BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_018857.1_cdsid_YP_006907565.1 [gene=BPS13_0006] [protein=terminase large subunit] [protein_id=YP_006907565.1] [location=1601..3400] (599 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: OR... 652 0.0 gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hyp... 652 0.0 gi|21538|lcl|protein:vir:63747 Length: 517 # NCBI annotation: gp... 610 e-176 gi|24920|lcl|protein:vir:80633 Length: 517 # NCBI annotation: gp... 610 e-176 gi|25110|lcl|protein:vir:80755 Length: 501 # NCBI annotation: pu... 544 e-156 gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: h... 419 e-119 gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: pre... 31 0.034 gi|19767|lcl|protein:vir:6384 Length: 677 # NCBI annotation: ter... 30 0.057 gi|19539|lcl|protein:vir:10320 Length: 627 # NCBI annotation: OR... 30 0.096 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 29 0.13 gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp... 29 0.18 gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp1... 28 0.27 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 26 1.6 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 26 1.6 gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 26 1.7 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 26 1.7 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 26 1.7 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 26 1.7 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 26 1.7 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 26 1.7 gi|12907|lcl|protein:vir:80398 Length: 431 # NCBI annotation: Bc... 25 2.1 gi|5606|lcl|protein:vir:107886 Length: 500 # NCBI annotation: gp... 25 2.8 gi|11818|lcl|protein:vir:79096 Length: 500 # NCBI annotation: gp... 25 3.4 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 24 5.2 gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hyp... 23 8.9 gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: OR... 23 8.9 >gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: ORF010 # Family: family:all:1430 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240892;genbank:gi:66394959;genbank:GeneID :5132488 Length = 605 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/574 (54%), Positives = 421/574 (73%), Gaps = 10/574 (1%) Query: 4 ITGELIQRIAKQTFGRTDLTKEELTYILTMVNCSSYLLKNHSVKSHPITFHVSGKDAARK 63 + G+ + +IA++TF +T+E++ +I+ M+N S+Y+LK H+++ HPITF + +D ++ Sbjct: 1 MDGKELIKIAQETFQTEKITREQIDHIINMLNPSTYMLKYHTLRGHPITFSIPNRDRSKA 60 Query: 64 QAHRPWQVDIINDTHPDKAVIKSRQLGLSEVGVGEMMHFADIHSYAGVKCLYTFPTNRQM 123 QAHRPWQ I+NDTHP+KAVIKSRQLGLSE+GV EM+HFAD+HSYA KCLYTFPTN QM Sbjct: 61 QAHRPWQTRIVNDTHPNKAVIKSRQLGLSEMGVMEMVHFADMHSYANAKCLYTFPTNEQM 120 Query: 124 KDFVSTRINPLLASGYYGSITDPYVDSLDKKKIRNSFLIFRSSSKAAAVEGIDIDYLSMD 183 K FV +R+NP+L Y+ I D DSL KKIRNS L FR+SSKA+ VEG+DIDYLS+D Sbjct: 121 KKFVQSRLNPVLEKEYFRDIVDWDKDSLGFKKIRNSSLFFRTSSKASTVEGVDIDYLSLD 180 Query: 184 EYDRVPASAEQSAIESMASSQFKIMRRWSTPTVPNYGIHKLFEESDQRIYMHKCDACNYT 243 EYDRV AE SA+ESM+SS FKI+RRWSTP+VP GIHKL+++SDQ Y H+C C+Y Sbjct: 181 EYDRVNLLAESSALESMSSSPFKIVRRWSTPSVPGMGIHKLYQQSDQWYYGHRCQHCDYL 240 Query: 244 QEIDYD----------LNVECLDPSGVDTLAKTVRDGTYRFICQKCKAPLDRWYNGLWVP 293 E+ Y+ N+ C++P GVD AKTV++G+Y+F+CQKC PLDRWYNG W Sbjct: 241 NEMSYNDYNPDNLEESGNMLCVNPEGVDEQAKTVQNGSYQFVCQKCGKPLDRWYNGEWHC 300 Query: 294 RFADRSLNNQGKRGYLISQLNAVWLSADDIKRKEINSESKQHFYNYVLGFPYQDVALAVQ 353 ++ +R+ N+G RGYLI+Q+NAVW+SAD++K KE+N+ESKQ FYNY+LG+P++DV L V Sbjct: 301 KYPERTKGNKGVRGYLITQMNAVWISADELKEKEMNTESKQAFYNYILGYPFEDVKLRVN 360 Query: 354 PDDVFKNKREYLPRALTNRADYRFISVGIDWGNRHWVTVRGFKDDGRIDLIRMFSIERAR 413 +DV+ NK L R Y I++GIDWGN HW+TV G +G++DLIR+FS+++ Sbjct: 361 EEDVYGNKSPIAETQLMKRDRYSHIAIGIDWGNTHWITVHGMLPNGKVDLIRLFSVKKMT 420 Query: 414 GVANIEADLWQVINEIAPYQPDIICADIGDSGNYVDKLIQHFGEGIAYGVKVNPNPRSTG 473 +EADL ++I EI+ Y PDII AD GDSGN V KLI HFG+ +G +P+STG Sbjct: 421 RPDLVEADLEKIIWEISKYDPDIIIADNGDSGNNVLKLINHFGKDKVFGCTYKSSPKSTG 480 Query: 474 QIVPVWSENRNMVTVDKLTQNKKHIADMKMGRLGFYQEEDQLLKLYLEHWQNVVIRDEQD 533 Q+ P ++EN N VTVDKL QNK+++ +K + Y D LK +L+HWQNVVI DE+D Sbjct: 481 QLRPEFNENNNRVTVDKLMQNKRYVQALKTKDISVYSTVDDDLKTFLKHWQNVVIMDEED 540 Query: 534 EKTKEMYQVIMDKGPDHFAQSSVYSMVGMEHVLE 567 EKT EMYQVI KG DH+AQ+SVY+ +G+ + E Sbjct: 541 EKTGEMYQVIKRKGDDHYAQASVYAYIGLTRIKE 574 >gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024465;genbank:gi:48696425;genbank:GeneID :2948061 Length = 605 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/574 (54%), Positives = 421/574 (73%), Gaps = 10/574 (1%) Query: 4 ITGELIQRIAKQTFGRTDLTKEELTYILTMVNCSSYLLKNHSVKSHPITFHVSGKDAARK 63 + G+ + +IA++TF +T+E++ +I+ M+N S+Y+LK H+++ HPITF + +D ++ Sbjct: 1 MDGKELIKIAQETFQTEKITREQIDHIINMLNPSTYMLKYHTLRGHPITFSIPNRDRSKA 60 Query: 64 QAHRPWQVDIINDTHPDKAVIKSRQLGLSEVGVGEMMHFADIHSYAGVKCLYTFPTNRQM 123 QAHRPWQ I+NDTHP+KAVIKSRQLGLSE+GV EM+HFAD+HSYA KCLYTFPTN QM Sbjct: 61 QAHRPWQTRIVNDTHPNKAVIKSRQLGLSEMGVMEMVHFADMHSYANAKCLYTFPTNEQM 120 Query: 124 KDFVSTRINPLLASGYYGSITDPYVDSLDKKKIRNSFLIFRSSSKAAAVEGIDIDYLSMD 183 K FV +R+NP+L Y+ I D DSL KKIRNS L FR+SSKA+ VEG+DIDYLS+D Sbjct: 121 KKFVQSRLNPVLEKEYFRDIVDWDKDSLGFKKIRNSSLFFRTSSKASTVEGVDIDYLSLD 180 Query: 184 EYDRVPASAEQSAIESMASSQFKIMRRWSTPTVPNYGIHKLFEESDQRIYMHKCDACNYT 243 EYDRV AE SA+ESM+SS FKI+RRWSTP+VP GIHKL+++SDQ Y H+C C+Y Sbjct: 181 EYDRVNLLAESSALESMSSSPFKIVRRWSTPSVPGMGIHKLYQQSDQWYYGHRCQHCDYL 240 Query: 244 QEIDYD----------LNVECLDPSGVDTLAKTVRDGTYRFICQKCKAPLDRWYNGLWVP 293 E+ Y+ N+ C++P GVD AKTV++G+Y+F+CQKC PLDRWYNG W Sbjct: 241 NEMSYNDYNPDNLEESGNMLCVNPEGVDEQAKTVQNGSYQFVCQKCGKPLDRWYNGEWHC 300 Query: 294 RFADRSLNNQGKRGYLISQLNAVWLSADDIKRKEINSESKQHFYNYVLGFPYQDVALAVQ 353 ++ +R+ N+G RGYLI+Q+NAVW+SAD++K KE+N+ESKQ FYNY+LG+P++DV L V Sbjct: 301 KYPERTKGNKGVRGYLITQMNAVWISADELKEKEMNTESKQAFYNYILGYPFEDVKLRVN 360 Query: 354 PDDVFKNKREYLPRALTNRADYRFISVGIDWGNRHWVTVRGFKDDGRIDLIRMFSIERAR 413 +DV+ NK L R Y I++GIDWGN HW+TV G +G++DLIR+FS+++ Sbjct: 361 EEDVYGNKSPIAETQLMKRDRYSHIAIGIDWGNTHWITVHGMLPNGKVDLIRLFSVKKMT 420 Query: 414 GVANIEADLWQVINEIAPYQPDIICADIGDSGNYVDKLIQHFGEGIAYGVKVNPNPRSTG 473 +EADL ++I EI+ Y PDII AD GDSGN V KLI HFG+ +G +P+STG Sbjct: 421 RPDLVEADLEKIIWEISKYDPDIIIADNGDSGNNVLKLINHFGKDKVFGCTYKSSPKSTG 480 Query: 474 QIVPVWSENRNMVTVDKLTQNKKHIADMKMGRLGFYQEEDQLLKLYLEHWQNVVIRDEQD 533 Q+ P ++EN N VTVDKL QNK+++ +K + Y D LK +L+HWQNVVI DE+D Sbjct: 481 QLRPEFNENNNRVTVDKLMQNKRYVQALKTKDISVYSTVDDDLKTFLKHWQNVVIMDEED 540 Query: 534 EKTKEMYQVIMDKGPDHFAQSSVYSMVGMEHVLE 567 EKT EMYQVI KG DH+AQ+SVY+ +G+ + E Sbjct: 541 EKTGEMYQVIKRKGDDHYAQASVYAYIGLTRIKE 574 >gi|21538|lcl|protein:vir:63747 Length: 517 # NCBI annotation: gp5 # Family: family:all:1430 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547610;genbank:GeneID:3783489 Length = 517 Score = 610 bits (1573), Expect = e-176, Method: Compositional matrix adjust. Identities = 288/518 (55%), Positives = 384/518 (74%), Gaps = 16/518 (3%) Query: 94 VGVGEMMHFADIHSYAGVKCLYTFPTNRQMKDFVSTRINPLLASGYYGSITDPYVDSLDK 153 +GVG M+HFAD HSYA VKCLYTFPT QM+ FV +R++P+L S YY SI D +SL+ Sbjct: 1 MGVGSMIHFADTHSYAAVKCLYTFPTGEQMRKFVQSRLDPVLESSYYSSILDKDNNSLNY 60 Query: 154 KKIRNSFLIFRSSSKAAAVEGIDIDYLSMDEYDRVPASAEQSAIESMASSQFKIMRRWST 213 K+IRNS L FR+SSK AVEG+DIDYLSMDEYDRVP +E SA+ESMASS FKI+RRWST Sbjct: 61 KRIRNSHLYFRTSSKPGAVEGVDIDYLSMDEYDRVPVFSEASALESMASSPFKIVRRWST 120 Query: 214 PTVPNYGIHKLFEESDQRIYMHKCDACNYTQEIDYD----------LNVECLDPSGVDTL 263 P+ P GIH+LFE SDQ Y+HKC+ CN+ ++DY+ N+ C++P GVDTL Sbjct: 121 PSAPGMGIHRLFENSDQHWYLHKCEKCNHWNQLDYEDYDSSSVEAGGNILCVNPQGVDTL 180 Query: 264 AKTVRDGTYRFICQKCKAPLDRWYNGLWVPRFADRSLNNQGKRGYLISQLNAVWLSADDI 323 AKTV +G+++F+C+KC APLDRWYNG WV + DR+ N G RGY+ISQ+NAVW+SADD+ Sbjct: 181 AKTVVEGSFQFVCKKCGAPLDRWYNGEWVAKHPDRTKNGDGIRGYMISQMNAVWISADDL 240 Query: 324 KRKEINSESKQHFYNYVLGFPYQDVALAVQPDDVFKNKREYLPRALTNRADYRFISVGID 383 KRKE+NS SKQ F+NY LG+P++D LAV +D+ +N + + +R DY++ISVGID Sbjct: 241 KRKELNSLSKQAFFNYTLGYPFEDAKLAVYSEDIIENPSPRVKVPMHSRGDYKYISVGID 300 Query: 384 WGNRHWVTVRGFKDDGRIDLIRMFSIERARGVANIEADLWQVINEIAPYQPDIICADIGD 443 WGN HWV+V G + G IDLIR+FS+E++RGV NIE+DL ++I E++ Y PD+I AD+GD Sbjct: 301 WGNTHWVSVHGMTERGEIDLIRLFSVEKSRGVGNIESDLDKIILEVSMYNPDMIVADVGD 360 Query: 444 SGNYVDKLIQHFGEGIAYGVKVNPNPRSTGQIVPVWSENRNMVTVDKLTQNKKHIADMKM 503 SGNYVDKL++HFGE +G +P+STGQ+ P W+E N+VTVDKL QNK++I +MK Sbjct: 361 SGNYVDKLVKHFGEDRVFGCIYKSSPKSTGQLKPQWNEAGNVVTVDKLMQNKRYIIEMKT 420 Query: 504 GRLGFYQEEDQLLKLYLEHWQNVVIRDEQDEKTKEMYQVIMDKGPDHFAQSSVYSMVGME 563 ++ FY D +LKL ++HW+NVVI+DE+DEK YQVI +G DH AQ+SVYS +G++ Sbjct: 421 KKVNFYSFIDPMLKLLVDHWRNVVIQDEEDEKDGTFYQVIGRRGDDHLAQASVYSFIGLD 480 Query: 564 HVLEPYIKKT---FENAFDYTAL-DVMGTSAKPDIFEK 597 + + Y++ + F + F + DV +S PDIF K Sbjct: 481 RLADMYLRGSKYEFNSTFVTSNYQDV--SSTPPDIFSK 516 >gi|24920|lcl|protein:vir:80633 Length: 517 # NCBI annotation: gp14 # Family: family:all:1430 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468454;genbank:gi:157325029;genbank:Ge neID:5601603 Length = 517 Score = 610 bits (1573), Expect = e-176, Method: Compositional matrix adjust. Identities = 288/518 (55%), Positives = 384/518 (74%), Gaps = 16/518 (3%) Query: 94 VGVGEMMHFADIHSYAGVKCLYTFPTNRQMKDFVSTRINPLLASGYYGSITDPYVDSLDK 153 +GVG M+HFAD HSYA VKCLYTFPT QM+ FV +R++P+L S YY SI D +SL+ Sbjct: 1 MGVGSMIHFADTHSYAAVKCLYTFPTGEQMRKFVQSRLDPVLESSYYSSILDKDNNSLNY 60 Query: 154 KKIRNSFLIFRSSSKAAAVEGIDIDYLSMDEYDRVPASAEQSAIESMASSQFKIMRRWST 213 K+IRNS L FR+SSK AVEG+DIDYLSMDEYDRVP +E SA+ESMASS FKI+RRWST Sbjct: 61 KRIRNSHLYFRTSSKPGAVEGVDIDYLSMDEYDRVPVFSEASALESMASSPFKIVRRWST 120 Query: 214 PTVPNYGIHKLFEESDQRIYMHKCDACNYTQEIDYD----------LNVECLDPSGVDTL 263 P+ P GIH+LFE SDQ Y+HKC+ CN+ ++DY+ N+ C++P GVDTL Sbjct: 121 PSAPGMGIHRLFENSDQHWYLHKCEKCNHWNQLDYEDYDSSSVEAGGNILCVNPQGVDTL 180 Query: 264 AKTVRDGTYRFICQKCKAPLDRWYNGLWVPRFADRSLNNQGKRGYLISQLNAVWLSADDI 323 AKTV +G+++F+C+KC APLDRWYNG WV + DR+ N G RGY+ISQ+NAVW+SADD+ Sbjct: 181 AKTVVEGSFQFVCKKCGAPLDRWYNGEWVAKHPDRTKNGDGIRGYMISQMNAVWISADDL 240 Query: 324 KRKEINSESKQHFYNYVLGFPYQDVALAVQPDDVFKNKREYLPRALTNRADYRFISVGID 383 KRKE+NS SKQ F+NY LG+P++D LAV +D+ +N + + +R DY++ISVGID Sbjct: 241 KRKELNSLSKQAFFNYTLGYPFEDAKLAVYSEDIIENPSPRVKVPMHSRGDYKYISVGID 300 Query: 384 WGNRHWVTVRGFKDDGRIDLIRMFSIERARGVANIEADLWQVINEIAPYQPDIICADIGD 443 WGN HWV+V G + G IDLIR+FS+E++RGV NIE+DL ++I E++ Y PD+I AD+GD Sbjct: 301 WGNTHWVSVHGMTERGEIDLIRLFSVEKSRGVGNIESDLDKIILEVSMYNPDMIVADVGD 360 Query: 444 SGNYVDKLIQHFGEGIAYGVKVNPNPRSTGQIVPVWSENRNMVTVDKLTQNKKHIADMKM 503 SGNYVDKL++HFGE +G +P+STGQ+ P W+E N+VTVDKL QNK++I +MK Sbjct: 361 SGNYVDKLVKHFGEDRVFGCIYKSSPKSTGQLKPQWNEAGNVVTVDKLMQNKRYIIEMKT 420 Query: 504 GRLGFYQEEDQLLKLYLEHWQNVVIRDEQDEKTKEMYQVIMDKGPDHFAQSSVYSMVGME 563 ++ FY D +LKL ++HW+NVVI+DE+DEK YQVI +G DH AQ+SVYS +G++ Sbjct: 421 KKVNFYSFIDPMLKLLVDHWRNVVIQDEEDEKDGTFYQVIGRRGDDHLAQASVYSFIGLD 480 Query: 564 HVLEPYIKKT---FENAFDYTAL-DVMGTSAKPDIFEK 597 + + Y++ + F + F + DV +S PDIF K Sbjct: 481 RLADMYLRGSKYEFNSTFVTSNYQDV--SSTPPDIFSK 516 >gi|25110|lcl|protein:vir:80755 Length: 501 # NCBI annotation: putative large terminase # Family: family:all:1430 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504114;genbank:gi:158079301;genbank:Ge neID:5666404 Length = 501 Score = 544 bits (1402), Expect = e-156, Method: Compositional matrix adjust. Identities = 261/491 (53%), Positives = 343/491 (69%), Gaps = 15/491 (3%) Query: 119 TNRQMKDFVSTRINPLLASGYYGSITDPYVDSLDKKKIRNSFLIFRSSSKAAAVEGIDID 178 TN QM FV TR++P+L +GYY +I D V+SL KKIRNSFL FRSSSK AVEG+DID Sbjct: 8 TNEQMTKFVQTRLDPVLQNGYYSTIVDQEVNSLKAKKIRNSFLYFRSSSKPGAVEGVDID 67 Query: 179 YLSMDEYDRVPASAEQSAIESMASSQFKIMRRWSTPTVPNYGIHKLFEESDQRIYMHKCD 238 YLSMDEYDRVPA AE SA+ESM+SS +KI+ RWSTP+ P+ GIH LF+ SDQ Y+HKC+ Sbjct: 68 YLSMDEYDRVPALAEASALESMSSSPYKIVNRWSTPSAPDMGIHGLFKGSDQHWYLHKCE 127 Query: 239 ACNYTQEIDYDL-----------NVECLDPSGVDTLAKTVRDGTYRFICQKCKAPLDRWY 287 CNY E+ YD N+ C++P GVD +AKTV DG+++F+CQKC PLDRWY Sbjct: 128 KCNYYNEMSYDAYTPEAPVESRGNILCVNPKGVDVVAKTVVDGSFQFVCQKCGEPLDRWY 187 Query: 288 NGLWVPRFADRSLNNQGKRGYLISQLNAVWLSADDIKRKEINSESKQHFYNYVLGFPYQD 347 NG+WVP++ DR+ N G RGY+ISQ+NAVW++AD +K KE+ S SKQ FYNY LG+PY D Sbjct: 188 NGVWVPKYPDRTKNGLGTRGYMISQMNAVWVTADQLKTKELQSLSKQAFYNYTLGYPYAD 247 Query: 348 VALAVQPDDVFKNKREYLPRALTNRADYRFISVGIDWGNRHWVTVRGFKDDGRIDLIRMF 407 + L V DV +KR YL +R DY+FISVGIDWGNRHWV++ G K +G +DLI++F Sbjct: 248 LKLTVNDSDVDSHKRNYLVEPAKDRGDYKFISVGIDWGNRHWVSIHGVKTNGTVDLIKLF 307 Query: 408 SIERARGV--ANIEADLWQVINEIAPYQPDIICADIGDSGNYVDKLIQHFGEGIAYGVKV 465 S+ ++ + I+ D+ + ++APY PDII AD+GDSG+ V KL+Q +G+ +G Sbjct: 308 SVGKSNPLDPNAIDVDIQSIKLQLAPYNPDIIVADVGDSGDKVAKLMQIYGKERVFGCVY 367 Query: 466 NPNPRSTGQIVPVWSENRNMVTVDKLTQNKKHIADMKMGRLGFYQEEDQLLKLYLEHWQN 525 P+STG +VP WS N V+ DKL QNK++I MK G +G+Y + D L LY EHW+N Sbjct: 368 PSTPKSTGNLVPTWSPQANKVSADKLMQNKRYINKMKEGEIGYYSKPDTELNLYKEHWKN 427 Query: 526 VVIRDEQDEKTKEMY-QVIMDKGPDHFAQSSVYSMVGMEHVLEPYIKKTFENAFDYTALD 584 VVIRD +DEKT + Q+I KG DH++Q+SVYSM+G E+++ + E FD + Sbjct: 428 VVIRDIEDEKTSTGFRQIIGRKGDDHYSQASVYSMLGYEYLMNVFT-GVKEYGFDSDWVS 486 Query: 585 VMGTSAKPDIF 595 KPDIF Sbjct: 487 TQLAPTKPDIF 497 >gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164748;genbank:gi:56693161;genbank:GeneID :3197442 Length = 488 Score = 419 bits (1077), Expect = e-119, Method: Compositional matrix adjust. Identities = 212/472 (44%), Positives = 318/472 (67%), Gaps = 11/472 (2%) Query: 123 MKDFVSTRINPLLASGYYGSITDPYVDSLDKKKIRNSFLIFRSSSKAAAVEGIDIDYLSM 182 M+DFV++RINP SGYY ++ DS+ K+IRNS ++FRSSS A+EG+D+D LS+ Sbjct: 1 MQDFVNSRINPQFESGYYSTLIKNN-DSVKMKQIRNSRMMFRSSSTGKALEGVDVDGLSL 59 Query: 183 DEYDRVPASAEQSAIESMASSQFKIMRRWSTPTVPNYGIHKLFEESDQRIYMHKCDACNY 242 DEYDR+ +AE SA ES++SS++ ++RRWSTPT PN GI + ESDQR ++++C C Sbjct: 60 DEYDRLNPTAEISAKESLSSSKYGLLRRWSTPTQPNMGIDLKYAESDQRKWVYRCQHCGL 119 Query: 243 TQEIDYDLNVECLDPSGVDTLAKTVRDGTYRFICQKCKAPLDRWYNGLWVPRFADRSLNN 302 Q++DY+ N++ ++ G+D + K + +GTY+++C+KC P+DRWY+G W D + Sbjct: 120 VQQLDYEKNIKLINKDGIDLIGKVIDEGTYQYVCRKCGKPIDRWYSGFW-----DITAPR 174 Query: 303 QGK-RGYLISQLNAVWLSADDIKRKEINSESKQHFYNYVLGFPYQDVALAVQPDDVFKNK 361 G+ GY ISQ++AVW+SA +K+KE+ + SKQ FYNY LG P+QD + + DV + Sbjct: 175 SGRAHGYEISQMDAVWVSASQMKQKELEAPSKQFFYNYSLGRPFQDTSNTLFEQDVTNHI 234 Query: 362 REYLPRALTNRADYRFISVGIDWG-NRHWVTVRGFKDDGRIDLIRMFSIERARGVANIEA 420 + R + R DYR ++VGIDWG ++H V V G K +GR+DLI + ++R+ GV NIE Sbjct: 235 NSSVSR-MEMREDYRLVTVGIDWGQHQHSVVVTGMKANGRVDLIGLKRVDRSEGVENIER 293 Query: 421 DLWQVINEIAPYQPDIICADIGDSGNYVDKLIQHFGEGIAYGVKVNPNPRSTGQIVPVWS 480 DL+Q++N + P++PD+I ADIG +GNY D+L Q FG+ + YGVKV + +S G ++ Sbjct: 294 DLYQIVNYLRPFEPDLILADIGYNGNYNDRLTQVFGKEVVYGVKVR-SAKSNGDYNAHFN 352 Query: 481 ENRNMVTVDKLTQNKKHIADMKMGRLGFYQEEDQLLKLYLEHWQNVVIRDEQDEKTKEMY 540 + + VT+DKLTQN I +K G + FY D L+LY +HW NVVIR E+ + K + Sbjct: 353 DGVSTVTIDKLTQNLIAINSIKAGDINFYNPYDTDLQLYAKHWGNVVIRQEESKDGKSVE 412 Query: 541 QVIMDKGPDHFAQSSVYSMVGMEHVLEPYIKKTFENAFDYTALDVMGTSAKP 592 VI KGPDH+AQS VYS+VGM +++ +++ +N+ TA + +S+ P Sbjct: 413 TVITRKGPDHYAQSFVYSLVGMRRLIDE-LRENQQNSPLMTAPLEIDSSSNP 463 >gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: predicted 66.2Kd protein # Family: family:all:1551 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039677;swissprot:sw:q05219;genbank:gi:962 5443;uniprot:Q05219;genbank:GeneID:2942932;interpro:IPR0 05021 Length = 593 Score = 31.2 bits (69), Expect = 0.034, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 47/241 (19%) Query: 305 KRGYLISQLNAVWLSADDIKRKEIN-----SESKQHFYNYVLGFPYQDVALAVQPDD--- 356 + G LI++ ++ WL DDI + ++ +ES++ F N V +D L+ Q + Sbjct: 324 REGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKFLNQVNA--AEDSWLSPQEWNRCQ 381 Query: 357 ------VFKNKREYLPRALTNRADYRFISVGIDWGNRH-WVTVRGFK-DDGRIDLIRMFS 408 + K+ RE+ P +R I++G D + W + G + DG + +I ++ Sbjct: 382 VDLAKYLDKHGREFAPLQRGDR-----ITLGFDGSKSNDWTALVGCRVSDGLLFVIDIWD 436 Query: 409 IERARGVANIEADLWQVINEIAPYQPDIICADIGDSGNYVDKLIQHFGEGIAYGVKVNPN 468 ++ G E +V + A Y AD+ + YVD+ +G +KVN + Sbjct: 437 PQKYGGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQ----WGRTYKKKLKVNAS 492 Query: 469 PRSTGQIVPVWSENRNMVTVDKLTQNKKHIADMKMGRLGFYQEEDQLLKLYLEHWQNVVI 528 P N V D Q K+ D + RL ED +L+ + H N V+ Sbjct: 493 P-------------NNPVAFDMRGQQKRFAFDCE--RL-----EDAVLEGEVWHDGNPVL 532 Query: 529 R 529 R Sbjct: 533 R 533 >gi|19767|lcl|protein:vir:6384 Length: 677 # NCBI annotation: terminase large subunit TerL # Family: family:all:140 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918997;genbank:gi:34610172;genbank:gi:912 14212;genbank:GeneID:2559603 Length = 677 Score = 30.4 bits (67), Expect = 0.057, Method: Compositional matrix adjust. Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 52/277 (18%) Query: 118 PTNRQMKDFVSTRINPL-LASGYYGSITDPYVDSLDK--KKIRNSFLIFRSSSKAAAVEG 174 PTN +DF RI+ + S G++ D+ +K K ++ ++ S G Sbjct: 95 PTNSAARDFSVRRIDRMHRHSPEIGAMMARSRDTDNKFDKHYKDGTILTLSWPSVTEFAG 154 Query: 175 IDIDYLSMDEYDRVP------------ASAEQSAIESMA-----SSQFKIM----RRW-- 211 I + + +YDR+P AS + S A SS + + R+W Sbjct: 155 RPIGRVCLTDYDRMPDDVDGDGEPFDLASKRTTTFGSFAMTLAESSPSREIEEDGRKWLA 214 Query: 212 STP--TVPNYGIHKLFEESDQRIYMHKCDACNYTQEIDYDLNV--ECLDP-SGVDTLAKT 266 S+P P GI L+ D+R KC C E + L +C D S DT+ Sbjct: 215 SSPHEAPPCKGILGLYNRGDRRRRYWKCPHCGDWFEPTFKLLKWDDCGDAVSCADTVRME 274 Query: 267 VRDGTYRFICQKCKAPLDRWYNGLWV----PRFADRSLNNQGKRGYLIS----------- 311 R + + LD W G+W+ AD +R + S Sbjct: 275 APCCGGRIEADQ-RNDLDLW--GVWLKDGESMTADDKRVGTPRRSRIASFWMNGVVAAFI 331 Query: 312 ---QLNAVWLSADDIKRKEINSESKQHFYNYVLGFPY 345 +L A +++A++ + + ES + FYN LG PY Sbjct: 332 SWRKLVANYITAEEDYERTGSQESLKKFYNTDLGEPY 368 >gi|19539|lcl|protein:vir:10320 Length: 627 # NCBI annotation: ORF22 # Family: family:all:140 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758915;genbank:gi:27311189;genbank:GeneID :956138 Length = 627 Score = 29.6 bits (65), Expect = 0.096, Method: Compositional matrix adjust. Identities = 52/232 (22%), Positives = 87/232 (37%), Gaps = 30/232 (12%) Query: 63 KQAHRPWQV---DIINDTHPDK-AVIKSRQLGLSEVGVGEMMHFADIHSYAGVKCLYTFP 118 K +P+Q+ D + D ++ V+KS ++G +++ + ++ D L P Sbjct: 45 KWKTKPFQIGIADAMCDPEEERVTVMKSMRVGYTKIVDLAIGYYMDADP---CSMLVVQP 101 Query: 119 TNRQMKDFVSTRINPLL--ASGYYGSITDPYVDSLDKKKIRNSFLIFRSSSKAAAVEGID 176 T + F I P+L G + D+L KK L ++ + Sbjct: 102 TIDDAEGFSKDEIAPMLRDVPCLQGKVQRD-DDTLLKKVYPGGSLTLVGANSPTGFRRLT 160 Query: 177 IDYLSMDEYDRVPASA-------EQSAIESMASSQFKIMRRWSTPTVPNYG-IHKLFEES 228 + + DE PA+ Q + ++ KI+ STPT+ I K F S Sbjct: 161 VRIVIFDEMSAYPANTGKDGDPVRQGEGRTFSAFNRKIIAG-STPTIAGVCRIEKEFIRS 219 Query: 229 DQRIYMHKCDACNYTQEIDYDLNVECLDPSGVDTLAKTVRDGTYRFICQKCK 280 DQR + C C + + + N P G LA F+C CK Sbjct: 220 DQRYFHVPCPHCGHKHILQWS-NFRW--PEGQPELA--------HFVCPSCK 260 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 29.3 bits (64), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 6/78 (7%) Query: 397 DDGRIDLIRMFSIERARGVANIEADLWQVINE-IAPYQPDIICADIGDSGNYVDKLIQHF 455 D GR + I + +E A ++N+E +LW + + +A I+ + GN+ ++ I+ Sbjct: 143 DSGRSESITLLIVEEAAFISNME-ELWASVQQTLATGGKCIVNSTYNGVGNWYERTIRAA 201 Query: 456 GEGIA----YGVKVNPNP 469 EG + +G+K + +P Sbjct: 202 KEGKSEFKYFGIKWSDHP 219 >gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655592;genbank:gi:109392463;genbank:GeneI D:4156949 Length = 594 Score = 28.9 bits (63), Expect = 0.18, Method: Compositional matrix adjust. Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 41/237 (17%) Query: 305 KRGYLISQLNAVWLSADDIKRKEIN-----SESKQHFYNYVLGFPYQDVALAVQP-DDVF 358 + G LI++ ++ WL DDI + ++ +ES++ F N V +D L+ Q + F Sbjct: 325 REGVLIARGDSTWLPIDDIIKSILSTKNSITESRRKFLNQVNA--AEDSWLSPQEWNRCF 382 Query: 359 KNKREYLPR-----ALTNRADYRFISVGIDWGNRH-WVTVRGFK-DDGRIDLIRMFSIER 411 + +YL R R D I++G D + W + G + DG + +I ++ ++ Sbjct: 383 ADPEKYLERRGHEFVPLQRGDR--ITLGFDGSKSNDWTALVGCRVSDGLLFVIDIWDPQK 440 Query: 412 ARGVANIEADLWQVINEIAPYQPDIICADIGDSGNYVDKLIQHFGEGIAYGVKVNPNPRS 471 G E +V + Y AD+ + YVD +G +KVN +P Sbjct: 441 YGGEVPREDVDAKVHSAFKHYDVVAFRADVKEFEAYVDS----WGRTYKKKLKVNASP-- 494 Query: 472 TGQIVPVWSENRNMVTVDKLTQNKKHIADMKMGRLGFYQEEDQLLKLYLEHWQNVVI 528 N V D Q K+ D + RL ED +L+ + H N V+ Sbjct: 495 -----------NNPVAFDMRGQQKRFAFDCE--RL-----EDAVLEGEVWHDGNAVL 533 >gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID: 1261617 Length = 595 Score = 28.1 bits (61), Expect = 0.27, Method: Compositional matrix adjust. Identities = 57/236 (24%), Positives = 99/236 (41%), Gaps = 37/236 (15%) Query: 305 KRGYLISQLNAVWLSADDIKRKEIN-----SESKQHFYNYVLGFPYQDVALAVQP-DDVF 358 + G LI++ ++ WL DDI + ++ +ES++ F N V +D L+ Q + F Sbjct: 326 REGLLIARGDSTWLPIDDIIKSILSTKNSITESRRKFLNQVNA--AEDSWLSPQEWNRCF 383 Query: 359 KNKREYLPRALTNRADY---RFISVGIDWGNRH-WVTVRGFK-DDGRIDLIRMFSIERAR 413 + +YL + A + I++G D + W + G + DG + +I ++ ++ Sbjct: 384 ADPDKYLDKMGFELAPLDRGQKITLGFDGSKSNDWTALVGCRVSDGLLFVIDIWDPQKYG 443 Query: 414 GVANIEADLWQVINEIAPYQPDIICADIGDSGNYVDKLIQHFGEGIAYGVKVNPNPRSTG 473 G E V + + Y AD+ + YVD +G +KVN +P Sbjct: 444 GEVPREFVDAAVHSAFSRYDVVAFRADVKEFEAYVDS----WGRTYKKKLKVNASP---- 495 Query: 474 QIVPVWSENRNMVTVDKLTQNKKHIADMKMGRLGFYQEEDQLLKLYLEHWQNVVIR 529 N V D Q K+ D + RL ED +L+ + H N V+R Sbjct: 496 ---------NNPVAFDMRGQQKRFAFDCE--RL-----EDAVLEGEVWHDGNPVLR 535 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 148 VDSLDKKKIRNSFLIFRSSSKAAAVEGIDIDYLSMDEYDRVPASAEQSAIESMASSQFKI 207 V++ K++ S +S+ + + G +D++ +DE +P S AIE S + Sbjct: 114 VNAPGAKRVATSEFRGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDGW 173 Query: 208 MRRWSTPTVPNY 219 STP N+ Sbjct: 174 ALIISTPKGLNW 185 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 148 VDSLDKKKIRNSFLIFRSSSKAAAVEGIDIDYLSMDEYDRVPASAEQSAIESMASSQFKI 207 V++ K++ S +S+ + + G +D++ +DE +P S AIE S + Sbjct: 114 VNAPGAKRVATSEFRGKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSVRDGW 173 Query: 208 MRRWSTPTVPNY 219 STP N+ Sbjct: 174 ALIISTPKGLNW 185 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID :1262208 Length = 568 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 67 RPWQVDIINDTHPDKAVIKSRQLGLS 92 RP Q + H ++K+RQLG S Sbjct: 55 RPAQRQLFRSMHNKNIILKARQLGFS 80 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneI D:2653342 Length = 568 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 67 RPWQVDIINDTHPDKAVIKSRQLGLS 92 RP Q + H ++K+RQLG S Sbjct: 55 RPAQRQLFRSMHNKNIILKARQLGFS 80 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID :1262002 Length = 568 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 67 RPWQVDIINDTHPDKAVIKSRQLGLS 92 RP Q + H ++K+RQLG S Sbjct: 55 RPAQRQLFRSMHNKNIILKARQLGFS 80 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneI D:935714 Length = 568 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 67 RPWQVDIINDTHPDKAVIKSRQLGLS 92 RP Q + H ++K+RQLG S Sbjct: 55 RPAQRQLFRSMHNKNIILKARQLGFS 80 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneI D:2653280 Length = 568 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 67 RPWQVDIINDTHPDKAVIKSRQLGLS 92 RP Q + H ++K+RQLG S Sbjct: 55 RPAQRQLFRSMHNKNIILKARQLGFS 80 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:Gene ID:4397501 Length = 568 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 67 RPWQVDIINDTHPDKAVIKSRQLGLS 92 RP Q + H ++K+RQLG S Sbjct: 55 RPAQRQLFRSMHNKNIILKARQLGFS 80 >gi|12907|lcl|protein:vir:80398 Length: 431 # NCBI annotation: BcepGomrgp12 # Family: family:all:7264 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210232;genbank:gi:146329924;genbank:Ge neID:5123507 Length = 431 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%) Query: 43 NHSVKSHPITFHVSGKDAARKQAHRPWQVD----IINDTHPDKAV----IKSRQLGLSEV 94 N S I V K ++ +A + D I N+ P+KA+ G EV Sbjct: 280 NTSSDVTRINLAVVDKTNSKPKALFAFATDLSIVINNNISPNKAIGVLGAMDTTAGNFEV 339 Query: 95 GVGEMMHFADIHSYAGVK 112 G +FAD+ S A VK Sbjct: 340 GGSVTAYFADVASVAAVK 357 >gi|5606|lcl|protein:vir:107886 Length: 500 # NCBI annotation: gp28 # Family: family:all:460 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024701;genbank:gi:48696938;genbank:GeneI D:2845974 Length = 500 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 68 PWQVDIINDTHPDKAVIKSRQLGLS 92 P+Q DT P K KSR++GLS Sbjct: 17 PYQQKWCADTSPVKVCEKSRRVGLS 41 >gi|11818|lcl|protein:vir:79096 Length: 500 # NCBI annotation: gp2 # Family: family:all:460 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111202;genbank:gi:134288795;genbank:G eneID:4960770 Length = 500 Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 68 PWQVDIINDTHPDKAVIKSRQLGLS 92 P+Q DT P K KSR++GLS Sbjct: 17 PYQQKWAADTSPVKVCEKSRRVGLS 41 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 340 VLGFPYQDVALAVQPDDVFKNKREYLPRALTNRADYRFISVGID-WGNRHWVTVRGFKDD 398 +L + + + A V+ D F+ E + ++ ++ I+V + W RHW+ F +D Sbjct: 129 LLSWLWLEEAYQVENQDKFETLVESIRGSIDAPDFFKQITVTFNPWSERHWLKSAFFDED 188 Query: 399 GR 400 R Sbjct: 189 TR 190 >gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hypothetical protein # Family: family:all:2792 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024480;genbank:gi:48696439;genbank:GeneID :2948028 Length = 142 Score = 23.1 bits (48), Expect = 8.9, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Query: 473 GQIVP---VWSENRNMVTVDKLTQNKKHIADMKMGRLG 507 G I+P V+ +TV++L K++ AD+ LG Sbjct: 45 GSIMPQEHVYLRYEGTITVERLRMKKENFADLGYASLG 82 >gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: ORF105 # Family: family:all:2792 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240911;genbank:gi:66395051;genbank:GeneID :5132680 Length = 142 Score = 23.1 bits (48), Expect = 8.9, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Query: 473 GQIVP---VWSENRNMVTVDKLTQNKKHIADMKMGRLG 507 G I+P V+ +TV++L K++ AD+ LG Sbjct: 45 GSIMPQEHVYLRYEGTITVERLRMKKENFADLGYASLG 82 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.136 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 276,803 Number of Sequences: 514 Number of extensions: 13207 Number of successful extensions: 88 Number of sequences better than 100.0: 36 Number of HSP's better than 100.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 53 Number of HSP's gapped (non-prelim): 38 length of query: 599 length of database: 206,069 effective HSP length: 77 effective length of query: 522 effective length of database: 166,491 effective search space: 86908302 effective search space used: 86908302 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)