Query lcl|NC_018840.1_cdsid_YP_006906501.1 [gene=8] [protein=hypothetical protein] [protein_id=YP_006906501.1] [location=6089..6436] Match_columns 115 No_of_seqs 2 out of 4 Neff 1.1 Searched_HMMs 1612 Date Thu Nov 7 12:50:43 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_8 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_8_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:80661 Length: 115 100.0 6.3E-90 3.9E-93 509.6 9.5 115 1-115 1-115 (115) 2 protein:vir:81216 Length: 118 96.8 1.7E-06 1E-09 52.3 2.8 111 1-115 1-118 (118) 3 protein:vir:1641 Length: 115 # 91.8 0.00033 2E-07 39.7 1.8 108 1-114 3-115 (115) 4 protein:vir:9577 Length: 112 # 81.2 0.0055 3.4E-06 33.0 2.1 107 2-114 1-112 (112) 5 protein:vir:9762 Length: 112 # 56.6 0.051 3.2E-05 27.7 1.7 107 2-114 1-112 (112) 6 protein:vir:78106 Length: 236 45.8 0.06 3.7E-05 27.3 0.3 103 1-115 106-236 (236) 7 protein:vir:94767 Length: 104 33.4 0.18 0.00011 24.7 0.8 99 10-114 1-104 (104) 8 protein:vir:103971 Length: 376 14.1 4.1 0.0025 17.2 4.1 100 1-115 53-171 (376) 9 protein:vir:98567 Length: 340 9.7 6.7 0.0042 16.0 5.1 100 1-115 20-138 (340) 10 protein:vir:7449 Length: 123 # 4.5 5.1 0.0032 16.7 0.4 38 1-73 77-123 (123) No 1 >protein:vir:80661 Length: 115 # NCBI annotation: gp8 # Family: family:all:30537 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285584;genbank:gi:148727090;genbank:GeneID:5247032 Probab=100.00 E-value=6.3e-90 Score=509.62 Aligned_cols=115 Identities=97% Similarity=1.609 Sum_probs=115.0 Q ss_pred CCcCCccceEEEeecceeecchhhhhhhhcchhhhhhhhhheeecccccchhcCCCCchhHHHHHHHHhhhcCCceeEEE Q lcl|NC_018840. 1 MTSFPYGETVVMLQPTVRVDDLGDKVEDWSKPVETVFHNVAIYASVSQEDEAAGRDSDYEHWSMLFKQPVKGAGYRCRWR 80 (115) Q Consensus 1 m~~fp~getvvmlqptvrvddlgd~vedw~~pvetv~hnvaiy~svsqedeaagrdsd~ehw~~lfkq~vk~agyrcrwr 80 (115) |+||||||||||||||||||||||+||||++||||||||||||+||||||||||||||||||+|||||||-+|||||||| T Consensus 1 mtgfpygetvvmlqptvrvddlgdkvedwskpvetvyhnvaiyasvsqedeaagrdsdyehwsmlfkqpvvgagyrcrwr 80 (115) T protein:vir:80 1 MTGFPYGETVVMLQPTVRVDDLGDKVEDWSKPVETVYHNVAIYASVSQEDEAAGRDSDYEHWSMLFKQPVVGAGYRCRWR 80 (115) T ss_pred CCCCCccceEEEeecceeeccccchhhhhhhhhhhhhhceeeEeecccccccccCCCchhhHhhhhhcccccCCeeeEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EeeEEEecCCCceeeecCcccccCcceeeeeecCC Q lcl|NC_018840. 81 IRGVVWEADGSPIVWHHPMSGWDAGTQVNVKRKKG 115 (115) Q Consensus 81 irgvvweadgsp~~whhpm~gwdagtqvnvkrkkg 115 (115) |||||||||||||+||||||||||||||||||||| T Consensus 81 irgvvweadgspivwhhpmsgwdagtqvnvkrkkg 115 (115) T protein:vir:80 81 IRGVVWEADGSPIVWHHPMSGWDAGTQVNVKRKKG 115 (115) T ss_pred EeeEEEecCCCceEEecCcccccCcceeeeeecCC Confidence 99999999999999999999999999999999999 No 2 >protein:vir:81216 Length: 118 # NCBI annotation: gp9 # Family: family:all:10295 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456739;genbank:gi:157168382;uniprot:Q9MBJ6;genbank:GeneID:5580339 Probab=96.84 E-value=1.7e-06 Score=52.27 Aligned_cols=111 Identities=21% Similarity=0.384 Sum_probs=79.7 Q ss_pred CCcCCccceEEEeecceeecch--hhhhhhhcchhhhhh-hhhheeecccccchhcCCCCchhHHHHHHHHhhhcCCcee Q lcl|NC_018840. 1 MTSFPYGETVVMLQPTVRVDDL--GDKVEDWSKPVETVF-HNVAIYASVSQEDEAAGRDSDYEHWSMLFKQPVKGAGYRC 77 (115) Q Consensus 1 m~~fp~getvvmlqptvrvddl--gd~vedw~~pvetv~-hnvaiy~svsqedeaagrdsd~ehw~~lfkq~vk~agyrc 77 (115) |+ .-|-+.|..|.|- .++|- +|+.+||+.|+|.-+ --++|-- |+.+.....|+.--..|. ||.-|=-+-+.|- T Consensus 1 m~-~~F~~~v~ilRa~-~~~~~yg~d~~~dw~~pv~ipV~~~vSvQP-v~StE~~~~r~~vVt~w~-l~~Ppg~d~~Lra 76 (118) T protein:vir:81 1 MT-VIFVNAVTVLRAR-EVGSVYSSEKTLTWDDPVRIDVPFLVSVQP-RGSTEGGTDRPTVVSAWW-MCTPPGTDLDLRP 76 (118) T ss_pred Ce-eeeeeeEEEecCC-ccccccCCCcccccCCceeeeccCcceeee-cCccccCCCCceeeeeeE-eecCCCCCcCCCc Confidence 43 4577888888888 44443 679999999999755 2234433 333334456776666777 5666644555555 Q ss_pred EEEEe---eEEEecCCCceeeecCc-ccccCcceeeeeecCC Q lcl|NC_018840. 78 RWRIR---GVVWEADGSPIVWHHPM-SGWDAGTQVNVKRKKG 115 (115) Q Consensus 78 rwrir---gvvweadgsp~~whhpm-~gwdagtqvnvkrkkg 115 (115) -=|+| |++.|.+|.|.-|-||. ++--.-|.-++|.-.| T Consensus 77 ~DRVr~a~G~~~eV~G~P~~wp~P~~t~~v~Hvea~LevvtG 118 (118) T protein:vir:81 77 EDRVELATGLQLEVVGQPLRWPDPVNQDQVHHVEANLEVVDG 118 (118) T ss_pred cceeeeccccEEEEecCcccccCccccccccceeEEEEEecC Confidence 44444 99999999999999999 8888889999999999 No 3 >protein:vir:1641 Length: 115 # NCBI annotation: hypothetical protein # Family: family:all:1270 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695062;genbank:gi:23455753;genbank:GeneID:955487 Probab=91.76 E-value=0.00033 Score=39.67 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=71.9 Q ss_pred CCcCCccceEEEeeccee-ecchhhhhhhhcchhhhhhhhhheeecccccchhcCC--CCchhHHHHHHHHhhhcCCcee Q lcl|NC_018840. 1 MTSFPYGETVVMLQPTVR-VDDLGDKVEDWSKPVETVFHNVAIYASVSQEDEAAGR--DSDYEHWSMLFKQPVKGAGYRC 77 (115) Q Consensus 1 m~~fp~getvvmlqptvr-vddlgd~vedw~~pvetv~hnvaiy~svsqedeaagr--dsd~ehw~~lfkq~vk~agyrc 77 (115) |-|-=-||||..+.|+.- .|++|.-+.+| +|..++||-+ +..|.+|-.... +-.--.|++.|-.--..-==.| T Consensus 3 ~m~~ikGetVtvi~~~~tG~D~~g~pi~~~---~~e~V~nVLV-~P~s~~d~~~~~~p~G~~v~~tla~PK~~~~~lrg~ 78 (115) T protein:vir:16 3 FMGMIKGIAVTLIDKVETGKDPFGNPIYED---KEIVVNNVLV-SPTSSDDIVNQLTLTGKKAIYTLAIPKKDTHDWENK 78 (115) T ss_pred eecccCceeEEEecceecccCCCCCCcccc---cceEcCceee-CCCChhhcccccCcceeEEEEEEecCCCCCCcccCc Confidence 566678999999999955 89999999888 4577888854 556666654442 2233346666643211111248 Q ss_pred EEEEeeEEEecCCCceeeecCc--ccccCcceeeeeecC Q lcl|NC_018840. 78 RWRIRGVVWEADGSPIVWHHPM--SGWDAGTQVNVKRKK 114 (115) Q Consensus 78 rwrirgvvweadgsp~~whhpm--~gwdagtqvnvkrkk 114 (115) +=|+||+.|+..|-|.=----+ +-|+ -+|.|-|-- T Consensus 79 ~V~~~G~~~~vvGdP~~~~~~~~P~~WN--~~V~ver~~ 115 (115) T protein:vir:16 79 KVRFFGKTWRTFGEPLEGIEGLIPLDWN--KKVTVEHYG 115 (115) T ss_pred eEEEeCceeEEecCCCCcccccCCCccC--CeEEEEEeC Confidence 8999999999999886433222 3344 467777765 No 4 >protein:vir:9577 Length: 112 # NCBI annotation: gp43 # Family: family:all:1270 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862882;genbank:gi:32469474;genbank:GeneID:1461319 Probab=81.20 E-value=0.0055 Score=32.99 Aligned_cols=107 Identities=20% Similarity=0.242 Sum_probs=68.8 Q ss_pred CcCCccceEEEeecc-eeecchhhhhhhhcchhhhhhhhhheeecccccchhcCC--CCchhHHHHHHHHhhhcCCceeE Q lcl|NC_018840. 2 TSFPYGETVVMLQPT-VRVDDLGDKVEDWSKPVETVFHNVAIYASVSQEDEAAGR--DSDYEHWSMLFKQPVKGAGYRCR 78 (115) Q Consensus 2 ~~fp~getvvmlqpt-vrvddlgd~vedw~~pvetv~hnvaiy~svsqedeaagr--dsd~ehw~~lfkq~vk~agyrcr 78 (115) .|.=-||||..+.++ +-.|++|.-+.+|. |..++||-+ +..|.+|-.... +-.--.|++.|-.--..-==.|+ T Consensus 1 m~~i~GetVtvi~~~~tG~D~~G~p~~e~~---~e~V~nVLV-~P~s~~d~~~~~~p~G~~v~~tla~PK~~~~~l~g~~ 76 (112) T protein:vir:95 1 MGRIKGITVTLIGKTKTGKDDFGHPIYENT---EIQVDNVLV-VPASTEDVTNQLNLTGKKASYTLGIPKGDQNEWKDRE 76 (112) T ss_pred CccccceeEEEecceeccccCCCCCeeecc---ceecCceEe-CCCChhhcccccCcceeEEEEEEecCCCCCCcccCcE Confidence 344569999999984 45788888777664 456678754 556666654442 22233466666432222112589 Q ss_pred EEEeeEEEecCCCce--eeecCcccccCcceeeeeecC Q lcl|NC_018840. 79 WRIRGVVWEADGSPI--VWHHPMSGWDAGTQVNVKRKK 114 (115) Q Consensus 79 wrirgvvweadgsp~--~whhpm~gwdagtqvnvkrkk 114 (115) =|+||..|+.-|.|. .=++--+-|+ -+|.|-|-. T Consensus 77 V~~~G~~~~vvG~P~~~~~~~~P~~WN--~~V~ver~e 112 (112) T protein:vir:95 77 VRFFGRKWRTIGIPLEGIEAMMPLDWN--KKVMVEAYE 112 (112) T ss_pred EEEeCcEEEEecCCccccCCCCCCccC--CeEEEEEcC Confidence 999999999999997 3333334565 467777777 No 5 >protein:vir:9762 Length: 112 # NCBI annotation: hypothetical protein # Family: family:all:1270 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795524;genbank:gi:28876280;genbank:GeneID:1257821 Probab=56.61 E-value=0.051 Score=27.68 Aligned_cols=107 Identities=17% Similarity=0.210 Sum_probs=66.9 Q ss_pred CcCCccceEEEeec-ceeecchhhhhhhhcchhhhhhhhhheeecccccch-hcCCCC-chhHHHHHHHHhhhcCCceeE Q lcl|NC_018840. 2 TSFPYGETVVMLQP-TVRVDDLGDKVEDWSKPVETVFHNVAIYASVSQEDE-AAGRDS-DYEHWSMLFKQPVKGAGYRCR 78 (115) Q Consensus 2 ~~fp~getvvmlqp-tvrvddlgd~vedw~~pvetv~hnvaiy~svsqede-aagrds-d~ehw~~lfkq~vk~agyrcr 78 (115) .|.=-||||..++| .+-.|.+|.-+..| .|..++||-+ +..|.+|- .+.|-+ .--.+++.|-.--..-==.|+ T Consensus 1 m~~ikGetVtvi~~~~tG~D~~g~p~~~~---~~e~V~nVLV-~P~s~~d~~~~~~p~G~~v~~tl~fPK~~~~~lrg~~ 76 (112) T protein:vir:97 1 MGKLRGITITLIDKVTIDIDPFGNPIKKD---KEISVDNVLV-SPATSDDITSQLSLSGKKAVYTLAIPKGDNHDWGDKE 76 (112) T ss_pred CccccceeEEEeccccccccCCCCceecc---cceecCcEEe-CCCChhhcccccCcCceEEEEEEecCCCCCCcccCcE Confidence 34456999999998 45668999988888 4577888855 55555554 232322 122345554321111112488 Q ss_pred EEEeeEEEecCCCceee--ecCcccccCcceeeeeecC Q lcl|NC_018840. 79 WRIRGVVWEADGSPIVW--HHPMSGWDAGTQVNVKRKK 114 (115) Q Consensus 79 wrirgvvweadgsp~~w--hhpm~gwdagtqvnvkrkk 114 (115) =|+||..|..=|.|+=- ++--+-|+ -+|.|-|-. T Consensus 77 V~~~G~~~~vvG~P~~~~~~~~P~~WN--~~V~Ver~e 112 (112) T protein:vir:97 77 VRFFGEKWRTVGLALEGIEELIPLEWN--KKVMVERYE 112 (112) T ss_pred EEEeCCeeEEecCCccccCCCCCCccC--CeEEEEEcC Confidence 89999999999998433 33334454 467777777 No 6 >protein:vir:78106 Length: 236 # NCBI annotation: hypothetical protein # Family: family:all:29846 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294804;genbank:gi:149882825;genbank:GeneID:5309134 Probab=45.83 E-value=0.06 Score=27.30 Aligned_cols=103 Identities=25% Similarity=0.363 Sum_probs=57.2 Q ss_pred CCcCCc----c-----ceEEEeecceeec--------chhhhhhhhcchhhhhhhhhheeecccccchhcCCCCchhHHH Q lcl|NC_018840. 1 MTSFPY----G-----ETVVMLQPTVRVD--------DLGDKVEDWSKPVETVFHNVAIYASVSQEDEAAGRDSDYEHWS 63 (115) Q Consensus 1 m~~fp~----g-----etvvmlqptvrvd--------dlgd~vedw~~pvetv~hnvaiy~svsqedeaagrdsd~ehw~ 63 (115) -.-||- | +.+.-|..-||.. .-...+|||++|+|.-+-.. +-+|-|-+.- . T Consensus 106 qgpfpkerpvgprvdgdvlmhldsFVRlRA~RkpdPYNpaqt~eDWt~P~EL~i~Ga-lassSStrtp-----------D 173 (236) T protein:vir:78 106 QGPFPKERPVGPRVDGDVLMHLDSFVRQRAARAPDPYNPDSTVEDWTAPEELPLDGF-FDPASSTEEY-----------D 173 (236) T ss_pred cCCCccccCCCCccchhhhhhhHHHHHHhhhcCCCCCCcccCCccccCccceeeccc-cccccccccc-----------c Confidence 223432 2 1111222333321 12346899999988765432 2222222221 1 Q ss_pred HHHHHhhhc---------CCceeEE--EEeeEEEecCCCceeeecCcccccCcceeeeeecCC Q lcl|NC_018840. 64 MLFKQPVKG---------AGYRCRW--RIRGVVWEADGSPIVWHHPMSGWDAGTQVNVKRKKG 115 (115) Q Consensus 64 ~lfkq~vk~---------agyrcrw--rirgvvweadgsp~~whhpm~gwdagtqvnvkrkkg 115 (115) .|=+|-+.. |--+.-= ---|-+||.+|-|--=-.|.+||..--.|.+-..+| T Consensus 174 ~ld~qt~Sta~Lti~DpnADV~~GDRIp~dgR~WeV~GFPS~daNaFTGwrptlevrltE~~G 236 (236) T protein:vir:78 174 AVRKKAVSRELLVLWDPNADVERGDRIVQGSRVWTVEGFPSAPMNPFTGRRRHRFVRVMEAVG 236 (236) T ss_pred hhheeecceeEEEeeCCCCCeeecccccCCceeEEeccCCCCCCcccccccceeEEEEeeccC Confidence 222333221 1112111 235789999999988888999999999999999999 No 7 >protein:vir:94767 Length: 104 # NCBI annotation: unknown # Family: family:all:1270 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996709;genbank:gi:45597424;genbank:GeneID:2769039 Probab=33.42 E-value=0.18 Score=24.70 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=60.1 Q ss_pred EEEeecce-eecchhhhhhhhcchhhhhhhhhheeecccccchhcC-CCC-chhHHHHHHHHhhhcCCceeEEEEeeEEE Q lcl|NC_018840. 10 VVMLQPTV-RVDDLGDKVEDWSKPVETVFHNVAIYASVSQEDEAAG-RDS-DYEHWSMLFKQPVKGAGYRCRWRIRGVVW 86 (115) Q Consensus 10 vvmlqptv-rvddlgd~vedw~~pvetv~hnvaiy~svsqedeaag-rds-d~ehw~~lfkq~vk~agyrcrwrirgvvw 86 (115) |+.++++. -.|++|.-+-.| +|..++||-+ +..|.+|-... |.+ .---|++.|-.--..-==.|+=|+||..| T Consensus 1 Vtl~~~~~~G~D~~g~pi~~~---~~e~V~nVLV-~P~s~~d~~~~~~p~G~~v~~tla~PK~~~~~l~g~~V~~~G~~~ 76 (104) T protein:vir:94 1 MTLIDKVETGKDPFGNPIYED---KEIVVNNVLV-SPTSSDDIVNQLTLTGKKAIYTLAIPKKDTHDWENKKVRFFGKTW 76 (104) T ss_pred CEeccceecCcCCCCCCcccc---cceEcCceee-CCCChhhcccccCcCceEEEEEEecCCCCCCcccCceEEEeCcEE Confidence 66666543 358899888887 5677888855 55566555332 222 22236666643211111258999999999 Q ss_pred ecCCCceee--ecCcccccCcceeeeeecC Q lcl|NC_018840. 87 EADGSPIVW--HHPMSGWDAGTQVNVKRKK 114 (115) Q Consensus 87 eadgsp~~w--hhpm~gwdagtqvnvkrkk 114 (115) +.-|.|.=- ++--+-|+ -+|.|-|-- T Consensus 77 ~vvGdP~~~~~~~~P~~WN--~~V~ver~~ 104 (104) T protein:vir:94 77 RTFGEPLEGIEELIPLDWN--KKVTVEHYG 104 (104) T ss_pred EEecCCccccCCcCCcccC--CeEEEEEeC Confidence 999999433 33334454 467777765 No 8 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=14.08 E-value=4.1 Score=17.24 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=52.9 Q ss_pred CCcCCccceEEEeecceeecchhhhhhh------hcchhh----------hhhhhhheeecccc---cchhcCCCCchhH Q lcl|NC_018840. 1 MTSFPYGETVVMLQPTVRVDDLGDKVED------WSKPVE----------TVFHNVAIYASVSQ---EDEAAGRDSDYEH 61 (115) Q Consensus 1 m~~fp~getvvmlqptvrvddlgd~ved------w~~pve----------tv~hnvaiy~svsq---edeaagrdsd~eh 61 (115) +..|-||+-+-+|-+. |+.|-.|- |.-||. .++|.-+||.-..- .-..-..-+-++- T Consensus 53 ~~~f~fg~p~~v~~~~----~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s~l~~k~n~l~~~~~Pnp~lT~~~f 128 (376) T protein:vir:10 53 AEVFTFDDPTPVMNRA----EILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSALFFKANVLASTFRPHRWLSRHAF 128 (376) T ss_pred eEEEEcCCceeccCcc----hhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhhhHHHHhHHHHhccCCCCCCCHHHH Confidence 6789999876544321 23333332 333664 47888888863221 1111223345677 Q ss_pred HHHHHHHhhhcCCceeEEEEeeEEEecCCCceeeecCcccccCcceeeeeecCC Q lcl|NC_018840. 62 WSMLFKQPVKGAGYRCRWRIRGVVWEADGSPIVWHHPMSGWDAGTQVNVKRKKG 115 (115) Q Consensus 62 w~~lfkq~vk~agyrcrwrirgvvweadgsp~~whhpm~gwdagtqvnvkrkkg 115 (115) |.+++..++-|.|| -+.+| ..+|.|+-.+|--+ .+|.+.+..+ T Consensus 129 ~~~v~d~ll~Gnay--~~~~r----n~~G~~~~L~pl~~-----~~vr~~~d~~ 171 (376) T protein:vir:10 129 ERWALDFLTFGNGY--LERRR----NMVGGTLRLEPALA-----KYVRRKADFN 171 (376) T ss_pred HHHHHHHHhcCCeE--EEEEE----CCCCCEEEEEEeCC-----cceEEEeeCC Confidence 88888777777777 34444 46888875443222 1233322222 No 9 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=9.69 E-value=6.7 Score=16.04 Aligned_cols=100 Identities=22% Similarity=0.207 Sum_probs=53.8 Q ss_pred CCcCCccceEEEeecceeecchhhhhhhhc------chhh----------hhhhhhheeecccc---cchhcCCCCchhH Q lcl|NC_018840. 1 MTSFPYGETVVMLQPTVRVDDLGDKVEDWS------KPVE----------TVFHNVAIYASVSQ---EDEAAGRDSDYEH 61 (115) Q Consensus 1 m~~fp~getvvmlqptvrvddlgd~vedw~------~pve----------tv~hnvaiy~svsq---edeaagrdsd~eh 61 (115) |..|-||+-+.+|-.. |+-|.+|-|. -|+. .++|+.+||....- --+....-+..+- T Consensus 20 ~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k~n~l~~~~~Pn~~lt~~~f 95 (340) T protein:vir:98 20 MEAFTFGEPVPVLDKR----DILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDF 95 (340) T ss_pred eeEEEcCCceeecCcc----hhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhhhhhhhHHhhccCCCCCCCHHHH Confidence 6678999876655211 2234444433 2552 56788889864321 1122233445667 Q ss_pred HHHHHHHhhhcCCceeEEEEeeEEEecCCCceeeecCcccccCcceeeeeecCC Q lcl|NC_018840. 62 WSMLFKQPVKGAGYRCRWRIRGVVWEADGSPIVWHHPMSGWDAGTQVNVKRKKG 115 (115) Q Consensus 62 w~~lfkq~vk~agyrcrwrirgvvweadgsp~~whhpm~gwdagtqvnvkrkkg 115 (115) +.+++.-++-|.||-.. + .+.+|.|+-.+|..+. +|.+.+..+ T Consensus 96 ~~~~~d~ll~Gnay~~~--~----rn~~G~~~~L~pl~~~-----~vr~~~~~~ 138 (340) T protein:vir:98 96 SRFALDYLVFGNAFLEQ--R----HSVTGQLIKLLTSPAK-----YTRRGVDDS 138 (340) T ss_pred HHHHHHHHhcCCeEEEE--E----ECCCCcEEEEEEeCCc-----eEEEcccCc Confidence 77777777778887543 2 3567888755544321 222222222 No 10 >protein:vir:7449 Length: 123 # NCBI annotation: gp26 # Family: family:all:2713 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818564;genbank:gi:29567001;genbank:GeneID:1260238 Probab=4.53 E-value=5.1 Score=16.68 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=20.5 Q ss_pred CCcCCccceEE--------Eeecceeecchh-hhhhhhcchhhhhhhhhheeecccccchhcCCCCchhHHHHHHHHhhh Q lcl|NC_018840. 1 MTSFPYGETVV--------MLQPTVRVDDLG-DKVEDWSKPVETVFHNVAIYASVSQEDEAAGRDSDYEHWSMLFKQPVK 71 (115) Q Consensus 1 m~~fp~getvv--------mlqptvrvddlg-d~vedw~~pvetv~hnvaiy~svsqedeaagrdsd~ehw~~lfkq~vk 71 (115) --+-.||.-.- .|+|||++ ++ +-+++|++-++-+- | T Consensus 77 sh~veYG~~LEla~~~kyaIi~Ptv~~--~~~~im~g~~~ll~~l~---------------------------------~ 121 (123) T protein:vir:74 77 SYSVHYGIWLEIANSGQYAVIGPFLPV--MGRKLMHDLEHLIDRLE---------------------------------R 121 (123) T ss_pred ecCeeecceeeecCCCCceeecchHHH--HhHHHHHHHHHHHHHhh---------------------------------c Confidence 33456666555 78999865 44 34566665444332 2 Q ss_pred cC Q lcl|NC_018840. 72 GA 73 (115) Q Consensus 72 ~a 73 (115) .. T Consensus 122 ~~ 123 (123) T protein:vir:74 122 AQ 123 (123) T ss_pred cC Confidence 11 Done!