Query lcl|NC_018839.1_cdsid_YP_006906456.1 [gene=10] [protein=hypothetical protein] [protein_id=YP_006906456.1] [location=6773..7105] Match_columns 110 No_of_seqs 1 out of 5 Neff 1.0 Searched_HMMs 1612 Date Thu Nov 7 12:49:23 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_10 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_10_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:80662 Length: 115 100.0 6.1E-79 3.8E-82 449.4 10.0 110 1-110 6-115 (115) 2 protein:vir:1643 Length: 111 # 73.7 0.087 5.4E-05 26.4 6.5 104 1-105 1-111 (111) 3 protein:vir:98426 Length: 131 59.9 0.38 0.00024 22.9 7.2 103 1-109 20-131 (131) 4 protein:vir:94768 Length: 111 39.5 0.62 0.00038 21.7 4.8 103 1-105 1-111 (111) 5 protein:vir:9579 Length: 111 # 38.0 0.81 0.0005 21.1 5.2 98 1-99 1-111 (111) 6 protein:vir:10368 Length: 118 7.9 8.4 0.0052 15.5 4.4 94 1-103 14-118 (118) 7 protein:vir:97070 Length: 118 4.8 14 0.0087 14.3 3.9 92 1-103 14-118 (118) 8 protein:vir:78523 Length: 338 4.0 13 0.0079 14.5 2.1 71 1-87 232-338 (338) 9 protein:vir:4348 Length: 121 # 3.6 19 0.012 13.6 4.9 96 1-105 18-121 (121) 10 protein:vir:94771 Length: 298 3.2 21 0.013 13.3 5.7 83 1-83 204-298 (298) No 1 >protein:vir:80662 Length: 115 # NCBI annotation: gp10 # Family: family:all:30538 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285586;genbank:gi:148727092;genbank:GeneID:5247033 Probab=100.00 E-value=6.1e-79 Score=449.39 Aligned_cols=110 Identities=95% Similarity=1.561 Sum_probs=109.6 Q ss_pred CccCCccccCcceeecCCCccCccEEEEEecCCcceeeeeeEEEEEeecccCchhHHHHHHHHHHHhhcCCCCCceEEEe Q lcl|NC_018839. 1 MLGDDGWLSGIPCVGTVPDDFSGDLIWLALDGGPQLHVREQVFLRVNVFSDMPDRAMSLARRVEAVLADGVDGDPVVYCK 80 (110) Q Consensus 1 mlgddgwlsgipcvgtvpddfsgdliwlaldggpqlhvreqvflrvnvfsdmpdramslarrveavladgvdgdpvvyck 80 (110) .|.||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||+|+ T Consensus 6 vlkddgwlsdipcvgtvpddfsgdliwlaldggpqlhvreqvflrvnvfsdmpdramslarrveavlvdgvdgdpvvfcr 85 (115) T protein:vir:80 6 VLKDDGWLSDIPCVGTVPDDFSGDLIWLALDGGPQLHVREQVFLRVNVFSDMPDRAMSLARRVEAVLVDGVDGDPVVFCR 85 (115) T ss_pred hhccCCcccccceeccCCCccCCcEEEEEecCCcceeeeeeEEEEEeecccCchhhHHHHhhhheeeeecCCCCeeEEEe Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCCCceeeecccccHHhHHHHhcccccCC Q lcl|NC_018839. 81 RSTGPDLLVDGARFDVYSLFELICRPVESE 110 (110) Q Consensus 81 rstgpdllvdgarfdvyslfelicrpvese 110 (110) |||||||||||||||||||||||||||||| T Consensus 86 rstgpdllvdgarfdvyslfelicrpvese 115 (115) T protein:vir:80 86 RSTGPDLLVDGARFDVYSLFELICRPVESE 115 (115) T ss_pred cCCCCceeeecccccHHHHHHHhhccccCC Confidence 999999999999999999999999999999 No 2 >protein:vir:1643 Length: 111 # NCBI annotation: hypothetical protein # Family: family:all:1269 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695064;genbank:gi:23455755;genbank:GeneID:955492 Probab=73.66 E-value=0.087 Score=26.39 Aligned_cols=104 Identities=9% Similarity=0.138 Sum_probs=76.5 Q ss_pred CccC--Ccccc---CcceeecCCCccCccEEEEEecCCcceeeeeeEEEEEeecccCchhHHHHHHHHHHHhhcCCCCCc Q lcl|NC_018839. 1 MLGD--DGWLS---GIPCVGTVPDDFSGDLIWLALDGGPQLHVREQVFLRVNVFSDMPDRAMSLARRVEAVLADGVDGDP 75 (110) Q Consensus 1 mlgd--dgwls---gipcvgtvpddfsgdliwlaldggpqlhvreqvflrvnvfsdmpdramslarrveavladgvdgdp 75 (110) |+-- -.||. |+||...+|.+=.+..+-+---||+..-...+-.|-|-++..---.|-.||.+|.+++.+....+. T Consensus 1 miE~~i~~~L~~~l~Vpv~~e~p~~~P~~FV~vErtGG~~~~~~~~~~lAVq~w~~S~~eAa~La~~v~~~l~~l~~~~~ 80 (111) T protein:vir:16 1 MIEIIIKNFLDTHLSVSSFLEKKGEMPLSYILFEKTGSSKSNHLLSSTFAFQSYAPSMYEAAKLNEQLKEVVERLIELNE 80 (111) T ss_pred ChHHhHHHHHhhcCCceeEeecCCCCCCceEEEEecCCccccccccceEEEEecchhHHHHHHHHHHHHHHHhhcccccc Confidence 2210 11221 699999999999999999999999988777999999999998888999999999999988877777 Q ss_pred eEEEecCCCCceeeeccc--ccHHhHHHHhcc Q lcl|NC_018839. 76 VVYCKRSTGPDLLVDGAR--FDVYSLFELICR 105 (110) Q Consensus 76 vvyckrstgpdllvdgar--fdvyslfelicr 105 (110) +.=|+-.+..++ -|+.. +-....|++.-- T Consensus 81 I~av~~~s~ynf-~d~~tk~~RYQav~~i~~~ 111 (111) T protein:vir:16 81 ISNVSLNSDYNF-TDTETKEYRYQAVFDINHY 111 (111) T ss_pred ceeeecCCCCcC-CCCCCCCceEEEEEEEeeC Confidence 888887777777 66652 111111111111 No 3 >protein:vir:98426 Length: 131 # NCBI annotation: ORF6 # Family: family:all:12105 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958284;genbank:gi:41057258;uniprot:Q38599;genbank:GeneID:2732810 Probab=59.92 E-value=0.38 Score=22.87 Aligned_cols=103 Identities=25% Similarity=0.393 Sum_probs=71.4 Q ss_pred CccCCccccCcceeecCCCccCccEEEEEecCCcceee-eeeEEEEEeecccCchhHHHHHHHHHHHhh--cCCCCCceE Q lcl|NC_018839. 1 MLGDDGWLSGIPCVGTVPDDFSGDLIWLALDGGPQLHV-REQVFLRVNVFSDMPDRAMSLARRVEAVLA--DGVDGDPVV 77 (110) Q Consensus 1 mlgddgwlsgipcvgtvpddfsgdliwlaldggpqlhv-reqvflrvnvfsdmpdramslarrveavla--dgvdgdpvv 77 (110) .|-..| -|+|.--.||.|=.+-.|=+---||+..+. ..+.+|.|-++.+--+.|-.||..+++.+- +|+.|.+++ T Consensus 20 ~l~a~~--~~V~V~t~vP~~RP~rfV~VertgG~~~~~~~Dr~~L~Vq~W~~t~~~A~~La~~vr~~ll~~~~~~g~~~~ 97 (131) T protein:vir:98 20 VLVARG--VTVPVGSRVPSPRPARFVRIERIGGPANTVVTDRPRLDVHCWGSSEEDAHDLMQLCRALLGAARGSHGDTVL 97 (131) T ss_pred HHHhcC--CceEecccCCCCCCceEEEEEecCCCcCCccccceEEEEEecCCCHHHHHHHHHHHHHHHhhcccccchhee Confidence 222332 578888889999999999998778866555 799999999999999999999999999766 889998888 Q ss_pred EEecCCCCceeeecc----c--ccHHhHHHHhcccccC Q lcl|NC_018839. 78 YCKRSTGPDLLVDGA----R--FDVYSLFELICRPVES 109 (110) Q Consensus 78 yckrstgpdllvdga----r--fdvyslfelicrpves 109 (110) -=....||--+=|.. | |.+. +..|--.- T Consensus 98 ~~~e~~gpy~~PD~es~~~Ryq~tv~----l~~r~~~~ 131 (131) T protein:vir:98 98 ARPATGGPQFLPDAETGAARWAFTLD----ITMRGHAL 131 (131) T ss_pred ccccCCCCCcCCCCCCCCceeEEEEE----EEeeeccC Confidence 777777753333311 1 1110 00000000 No 4 >protein:vir:94768 Length: 111 # NCBI annotation: unknown # Family: family:all:1269 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996711;genbank:gi:45597426;genbank:GeneID:2769040 Probab=39.51 E-value=0.62 Score=21.74 Aligned_cols=103 Identities=8% Similarity=0.114 Sum_probs=68.0 Q ss_pred CccC--Ccccc---CcceeecCCCccCccEEEEEecCCcceeeeeeEEEEEeecccCchhHHHHHHHHHHHhhcCCCCCc Q lcl|NC_018839. 1 MLGD--DGWLS---GIPCVGTVPDDFSGDLIWLALDGGPQLHVREQVFLRVNVFSDMPDRAMSLARRVEAVLADGVDGDP 75 (110) Q Consensus 1 mlgd--dgwls---gipcvgtvpddfsgdliwlaldggpqlhvreqvflrvnvfsdmpdramslarrveavladgvdgdp 75 (110) |+-- --||. |+||...+|.+=.|..+-+---||...--..+..+-|-++..---.|-.||.+|..++- ..++.| T Consensus 1 miE~~v~~~L~~~l~vpv~~e~p~~~p~~FV~vErtGG~~~~~~~~~~lAVQ~~~~S~~eAa~La~~v~~~~~-~l~~~~ 79 (111) T protein:vir:94 1 MIEIIIKNFLDTHLSVSSFLEKKGEMPLSYVLFEKTGSSKSNHLLSSTFAFQSYAPSMYEAAKLNEQLKEVVE-RLIELN 79 (111) T ss_pred ChHHhHHHHHhhcCCcceEeecCCCCCCceEEEEecCCccccccccceEEEEecchhHHHHHHHHHHHHHHHh-hccccc Confidence 2110 01111 69999999999999999999999988777789999999999888899999999999984 445554 Q ss_pred -eEEEecCCCCceeeeccc--ccHHhHHHHhcc Q lcl|NC_018839. 76 -VVYCKRSTGPDLLVDGAR--FDVYSLFELICR 105 (110) Q Consensus 76 -vvyckrstgpdllvdgar--fdvyslfelicr 105 (110) +.=|+-.+..++ -|++. +-....|++.-- T Consensus 80 ~i~~v~~~s~Ynf-~d~~tk~~RYQav~~i~~~ 111 (111) T protein:vir:94 80 EISNVSLNSDYNF-TDTETKEYRYQAVFDINHY 111 (111) T ss_pred ccceeecCCCccc-CCCcCCCceEEEEEEEeeC Confidence 444544444444 45441 111111221111 No 5 >protein:vir:9579 Length: 111 # NCBI annotation: gp45 # Family: family:all:1269 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862884;genbank:gi:32469476;genbank:GeneID:1461321 Probab=37.96 E-value=0.81 Score=21.08 Aligned_cols=98 Identities=12% Similarity=0.194 Sum_probs=72.0 Q ss_pred CccC--Cccc---cCcceeecCCCccCccEEEEEecCCcceeeeeeEEEEEeecccCchhHHHHHHHHHHHhhcCCCCCc Q lcl|NC_018839. 1 MLGD--DGWL---SGIPCVGTVPDDFSGDLIWLALDGGPQLHVREQVFLRVNVFSDMPDRAMSLARRVEAVLADGVDGDP 75 (110) Q Consensus 1 mlgd--dgwl---sgipcvgtvpddfsgdliwlaldggpqlhvreqvflrvnvfsdmpdramslarrveavladgvdgdp 75 (110) |+-- --|| -|+||...+|.+..|-.+-+---||+..-...+-.|-|-++..--..|-.||..|.+++ .+.++.| T Consensus 1 miE~~v~~~L~~~l~vpv~~~vp~~~P~~FV~vErtGG~~~~~~~~p~laVq~wg~S~~~Aa~La~~v~~a~-~~l~~~~ 79 (111) T protein:vir:95 1 MIEIIINKYLDGHLDVPSFFEHEAEAPDSFVIIQKTGGKERNHSGSATFAFQSYAPTMQKAAELNVKVKSAV-KGLIELD 79 (111) T ss_pred ChHHhHHHHhhhhcCeeEEeecCCCCCCceEEEEeeCCccccccccceEEEEeccccHHHHHHHHHHHHHHH-hhhhccc Confidence 2210 0122 35999999999999999999999999887779999999999999999999999999988 6667777 Q ss_pred eEEEecCCCCceeeeccc--------ccHHhH Q lcl|NC_018839. 76 VVYCKRSTGPDLLVDGAR--------FDVYSL 99 (110) Q Consensus 76 vvyckrstgpdllvdgar--------fdvysl 99 (110) -+---.-.++=-+-|+.. ||++-. T Consensus 80 ~i~~v~~~s~ynf~d~~tk~~RYQ~~~~i~~~ 111 (111) T protein:vir:95 80 SICGVHLNSDYNFTDTETKQYRYQAVFDINYF 111 (111) T ss_pred cccccccCCccccCCCCCCCceEEEEEEEEeC Confidence 664444455545566542 333222 No 6 >protein:vir:10368 Length: 118 # NCBI annotation: conserved phage protein # Family: family:all:3244 # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858960;genbank:gi:32128425;genbank:GeneID:2648389 Probab=7.90 E-value=8.4 Score=15.52 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=43.0 Q ss_pred CccCCccccCcceeecCCCccCccEEEEEecCCcceeee------eeEEEEEeecccCchhHHHHHHHHHHHhhcCCCCC Q lcl|NC_018839. 1 MLGDDGWLSGIPCVGTVPDDFSGDLIWLALDGGPQLHVR------EQVFLRVNVFSDMPDRAMSLARRVEAVLADGVDGD 74 (110) Q Consensus 1 mlgddgwlsgipcvgtvpddfsgdliwlaldggpqlhvr------eqvflrvnvfsdmpdramslarrveavladgvdgd 74 (110) ..++.=|-...|= |+. +.-=.+|--+.|-|.-... .++-+.|||+++-++.|.+|++.|+..|...... T Consensus 14 ~~~~RVyp~~aP~-~~~---~~Pyiv~q~vsg~p~~~l~G~~~~~~~~rvQIdvyA~t~~~A~~l~~av~~al~~~~~~- 88 (118) T protein:vir:10 14 VFSGRVYADIPPD-SPP---LDAYAIYQRVGGVPVYWQEGGMPEKVNARVQIQIWSRSKQEAYLATVQVLRLVSEANDM- 88 (118) T ss_pred hcCCccccccCCC-CCC---cCCEEEEEecCCcccccccCCCCccceeEEEEEEeeCCHHHHHHHHHHHHHHhhhcccc- Confidence 3333333333331 110 1123445444443322221 1245778999999999999999999888654222 Q ss_pred ceEEEecCCC-----CceeeecccccHHhHHHHh Q lcl|NC_018839. 75 PVVYCKRSTG-----PDLLVDGARFDVYSLFELI 103 (110) Q Consensus 75 pvvyckrstg-----pdllvdgarfdvyslfeli 103 (110) |..... ||.-.=++.+|+.=.|..- T Consensus 89 ----~~~~~~~d~ye~dt~l~r~~~Df~vw~~~~ 118 (118) T protein:vir:10 89 ----QVLSQPIDDYVREIKLYGSRVDISMWYNLT 118 (118) T ss_pred ----eeccCCCccccccCCceEEEEEEEEeeecC Confidence 111111 1111222333322122211 No 7 >protein:vir:97070 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:3244 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453569;genbank:gi:84662604;genbank:GeneID:5142485 Probab=4.84 E-value=14 Score=14.30 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=41.1 Q ss_pred CccCCccccCcceeecCCCccC--ccEEEEEecCCcceee------eeeEEEEEeecccCchhHHHHHHHHHHHhhcCCC Q lcl|NC_018839. 1 MLGDDGWLSGIPCVGTVPDDFS--GDLIWLALDGGPQLHV------REQVFLRVNVFSDMPDRAMSLARRVEAVLADGVD 72 (110) Q Consensus 1 mlgddgwlsgipcvgtvpddfs--gdliwlaldggpqlhv------reqvflrvnvfsdmpdramslarrveavladgvd 72 (110) ..++.-+- +..|++.. -=.+|--+.|-|.-.. ...+-+.|||+++-++.|.+|++.|+..|.-.-. T Consensus 14 ~~~~Rvyp------~~aP~~~~~~Pyiv~q~vsg~p~~~ldG~~~~~~~~rvQIdvyA~t~~~A~~l~~av~~al~~~~~ 87 (118) T protein:vir:97 14 VFSGRVYA------DIPPDSPPLDAYAIYQRVGGVPVYWKEGGMPDKVNARVQVQIWSRSKQEAYLATVQVLRIVSEAND 87 (118) T ss_pred hcCCcccc------ccCCCCCCcCCEEEEEecCCcccccccCCCCCccceeEEEEEeeCCHHHHHHHHHHHHHHhhcccc Confidence 22222222 22333321 2344544444332222 0124467899999999999999999988754311 Q ss_pred CCceEEEecCCC-----CceeeecccccHHhHHHHh Q lcl|NC_018839. 73 GDPVVYCKRSTG-----PDLLVDGARFDVYSLFELI 103 (110) Q Consensus 73 gdpvvyckrstg-----pdllvdgarfdvyslfeli 103 (110) .+.+... ||.-.=++++|..=-|.+- T Consensus 88 -----~~~~~~~~~~ye~dt~lyr~~~Df~iw~~~~ 118 (118) T protein:vir:97 88 -----MQVLSQPIDDYVRELKLYGSRVDISMWYNLT 118 (118) T ss_pred -----cccccCCcccccccCCceEEEEEEEEEeecC Confidence 1222222 2222222222221111111 No 8 >protein:vir:78523 Length: 338 # NCBI annotation: Putative head structural protein # Family: family:all:507 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491585;genbank:gi:157786408;genbank:GeneID:5625675 Probab=4.01 E-value=13 Score=14.51 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=34.5 Q ss_pred CccCCccccCcceeec--CCCcc-----------CccE--EEEEecCCcceeeeee---------------------EEE Q lcl|NC_018839. 1 MLGDDGWLSGIPCVGT--VPDDF-----------SGDL--IWLALDGGPQLHVREQ---------------------VFL 44 (110) Q Consensus 1 mlgddgwlsgipcvgt--vpddf-----------sgdl--iwlaldggpqlhvreq---------------------vfl 44 (110) +-|..+-+.|+|.+-+ +|++. -||. +|+...++..+-+-+| +.+ T Consensus 232 ~~~~~~~l~G~PV~~~~~ip~~~~~~~~~~~~~~~gdfs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (338) T protein:vir:78 232 LAASAGDLLGLPVQFGKAVGGDLGAATDSKVRVVGGDFSQLKYGFADEIRVKMSDTATLTDNTSPTPQTVSMWQTNQIAI 311 (338) T ss_pred cCCCCceeeeeeEEEccccCccccccCCcccEEEEEecceEEEEeecccEEEEeecccccccccccccchhhhhcCcEEE Confidence 3344567889999743 66421 1211 3445555554443333 333 Q ss_pred EEeecccCchhHHHHHHHHHHHhhcCCCCCceEEEecCCCCce Q lcl|NC_018839. 45 RVNVFSDMPDRAMSLARRVEAVLADGVDGDPVVYCKRSTGPDL 87 (110) Q Consensus 45 rvnvfsdmpdramslarrveavladgvdgdpvvyckrstgpdl 87 (110) |+-.+-|. .=++.+-++.-|--+-||- T Consensus 312 r~~~r~d~----------------~v~~~~a~~~l~~~~~~~~ 338 (338) T protein:vir:78 312 LIEVTFGW----------------LLGDKQAFVKFVDDEDPDA 338 (338) T ss_pred EEEEEecc----------------EeecccceEEEecccCCCC Confidence 33332221 1123445666666677766 No 9 >protein:vir:4348 Length: 121 # NCBI annotation: Orf15 # Family: family:all:896 # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061511;genbank:gi:9635607;genbank:GeneID:1262874 Probab=3.65 E-value=19 Score=13.62 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=48.3 Q ss_pred CccCCc-cc--cCcceeecCCCccCccEEEEEecCCcceee-----eeeEEEEEeecccCchhHHHHHHHHHHHhhcCCC Q lcl|NC_018839. 1 MLGDDG-WL--SGIPCVGTVPDDFSGDLIWLALDGGPQLHV-----REQVFLRVNVFSDMPDRAMSLARRVEAVLADGVD 72 (110) Q Consensus 1 mlgddg-wl--sgipcvgtvpddfsgdliwlaldggpqlhv-----reqvflrvnvfsdmpdramslarrveavladgvd 72 (110) .||.+. =+ -|++=-|+.+ -=++|--+.|-|.-+. -+++-+.|+|+++-++.|-+|++.|+..|. +.. T Consensus 18 llg~~~~Rvyp~~~aP~~~~~----Pyiv~q~vsg~p~~~l~g~~~~~~~~vQIDvyA~t~~~A~~l~~av~~Al~-~~~ 92 (121) T protein:vir:43 18 ILGASPLRMYQFGLAPQLVVK----PYATWQTISGSPENYLWGRPDADGFTIQVDIFSATAAEARDAAKAIRDAIE-LSA 92 (121) T ss_pred hhcCCCceeeccCCCCCCCcC----CeEEEEEecCcccceecCCCCcceeEEEEEeeeCCHHHHHHHHHHHHHHhh-hcC Confidence 444321 11 1332112211 1234444444333222 245667899999999999999999998885 322 Q ss_pred CCceEEEecCCCCceeeecccccHHhHHHHhcc Q lcl|NC_018839. 73 GDPVVYCKRSTGPDLLVDGARFDVYSLFELICR 105 (110) Q Consensus 73 gdpvvyckrstgpdllvdgarfdvyslfelicr 105 (110) + .+.+=....-+|.-.=+..||+ +.| +-| T Consensus 93 ~-~~~~~~~~ye~dT~lyR~s~Dv-~w~--~~r 121 (121) T protein:vir:43 93 Y-VVRWGGESVDPDTKTYRVSFDV-DWI--VQR 121 (121) T ss_pred C-cccCCCCCCcccccceeeeeEE-EEe--ecC Confidence 2 2222222233455455566663 222 223 No 10 >protein:vir:94771 Length: 298 # NCBI annotation: major head protein # Family: family:all:966 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996706;genbank:gi:45597421;genbank:GeneID:2769044 Probab=3.21 E-value=21 Score=13.31 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=31.3 Q ss_pred CccCCccccCccee--ecCCCccCc--cEEEE-EecCCcceeeeeeEEEEEeecccCchhHHHHHHH------HHHHhh- Q lcl|NC_018839. 1 MLGDDGWLSGIPCV--GTVPDDFSG--DLIWL-ALDGGPQLHVREQVFLRVNVFSDMPDRAMSLARR------VEAVLA- 68 (110) Q Consensus 1 mlgddgwlsgipcv--gtvpddfsg--dliwl-aldggpqlhvreqvflrvnvfsdmpdramslarr------veavla- 68 (110) +-|-.+-|-|+|++ -.+|+...+ +.+++ -+..+-.+-+|+++-+++.=..|--...+++.++ ++.-+. T Consensus 204 ~~~~~~tl~G~PV~~~~~v~~~~~~~~~~~~~Gdfs~~~~~~~~~~~~~~~~~~~~~d~~~~~~f~~~~v~~r~~~r~~~ 283 (298) T protein:vir:94 204 WGATPDTINGLPVDVNKTVSDMSLTQRDRAIIGDFANGFKWGYAKEVPLEVIQYGDPDNSGLDLKGYNQVYIRAELFLGW 283 (298) T ss_pred cCCCCceecceeeEEecccccccCCCccEEEEeeccceEEEEEecCceEEEeecCCCcCcchhhhhcCcEEEEEEEEecc Confidence 33444568899987 445643211 11111 0001111223333333333233211111222221 111111 Q ss_pred cCCCCCceEEEecCC Q lcl|NC_018839. 69 DGVDGDPVVYCKRST 83 (110) Q Consensus 69 dgvdgdpvvyckrst 83 (110) .=.+-..+++.|.-| T Consensus 284 ~~~~~~a~~~l~~~t 298 (298) T protein:vir:94 284 GILDATKFARVTEAN 298 (298) T ss_pred EeecccceEEEEecC Confidence 112345677777777 Done!