Query lcl|NC_018837.1_cdsid_YP_006906390.1 [gene=My1_138] [protein=hypothetical protein] [protein_id=YP_006906390.1] [location=complement(99982..100482)] Match_columns 166 No_of_seqs 4 out of 8 Neff 1.8 Searched_HMMs 1612 Date Thu Nov 7 14:20:36 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_138 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_138_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:104224 Length: 161 100.0 1E-101 8E-105 573.8 14.7 161 6-166 1-161 (161) 2 protein:vir:79571 Length: 137 97.7 1E-06 6.4E-10 53.4 10.3 132 1-159 1-137 (137) 3 protein:vir:3428 Length: 131 # 96.7 4.9E-05 3E-08 44.2 9.9 126 6-159 1-131 (131) 4 protein:vir:397 Length: 132 # 95.1 0.00083 5.1E-07 37.5 9.8 127 6-159 1-132 (132) 5 protein:vir:102955 Length: 138 12.3 5.1 0.0032 16.7 7.5 116 5-166 1-128 (138) 6 protein:vir:1244 Length: 145 # 11.2 5.7 0.0035 16.4 11.7 139 6-166 1-142 (145) 7 protein:vir:4907 Length: 128 # 10.5 6.1 0.0038 16.3 11.0 122 1-158 1-128 (128) 8 protein:vir:2741 Length: 128 # 9.7 6.7 0.0041 16.1 10.8 122 1-158 1-128 (128) 9 protein:vir:96125 Length: 140 7.3 9.2 0.0057 15.3 10.8 138 1-164 1-140 (140) 10 protein:vir:98883 Length: 517 5.2 6.8 0.0042 16.0 1.6 151 10-166 1-195 (517) No 1 >protein:vir:104224 Length: 161 # NCBI annotation: Hypothetical protein # Family: family:all:27047 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006974;genbank:gi:46401875;genbank:GeneID:2777635 Probab=100.00 E-value=1.3e-101 Score=573.76 Aligned_cols=161 Identities=55% Similarity=0.966 Sum_probs=160.9 Q ss_pred cchhhHHHHHHHHHHHHhcCCCchhhhhhhccccccceeeehhhhcccceeEEEecCCCccccCCcceeeeeeeEEeeEe Q lcl|NC_018837. 6 MNHRASIAVALKDRIISELDGSKPELYFTNLYGNASTRIYKFEEINEFPYVGIALGSETFSYLPSAQQEVWLELLVYAFV 85 (166) Q Consensus 6 M~HRaSIa~a~vdri~~eldgs~pd~YftnlygNvs~~~ykfeei~eFPyv~v~lG~Et~~YlPsgqqwmfLeL~i~ay~ 85 (166) |+||+|||+||||||+++||||+||+||||||||||+++||||||+|||||+||+|+||++|||||||||||||||++|+ T Consensus 1 mdhrtsiaqamvdriskqmdgsqpdeyfnnlygnvsrqtykfeeirefpyvavhigtetgqylpsgqqwmflelpilvyd 80 (161) T protein:vir:10 1 MDHRTSIAQAMVDRISKQMDGSQPDEYFNNLYGNVSRQTYKFEEIREFPYVAVHIGTETGQYLPSGQQWMFLELPILVYD 80 (161) T ss_pred CcchhHHHHHHHHHHHhhcCCCCchhhhhhhhcccccceechhhhhhCceeEEEecccccccccCCceeEEeecceeEec Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccHHHHHHHHHHHHHHhhhCCCceEEEEeCCCCCccceeeeeEEEEEecccccccccccceeeEEEeeccCcccccc Q lcl|NC_018837. 86 REQVNVQAELENIISDIKTVVDTGGNLSYTVNTPDGSSYPWSIIEWRIASVDTDEGLLAPHGLGQISISVKYAPPRLALR 165 (166) Q Consensus 86 ke~~~~qeeLE~li~DIKTviDTggnleyTv~tP~Gs~~p~eat~m~i~Sv~TDEGlL~P~g~~evsi~v~y~~~~~~~r 165 (166) |||+++|||||||++||||||||||||||||++||||+||||||||+|+||+||||||+|+|++||+++|||+|||++|| T Consensus 81 kektdiqeqleklvadiktvidtggnleytvskpngstfpceatdmiitsvstdegllapyglaeinvtvryqpprrslr 160 (161) T protein:vir:10 81 KEKTDIQEQLEKLVADIKTVIDTGGNLEYTVSKPNGSTFPCEATDMIITSVSTDEGLLAPYGLAEINVTVRYQPPRRSLR 160 (161) T ss_pred cccccHHHHHHHHHHHHHHHhhCCCceeEEEeCCCCccccccccceeeeeecccccccccccceeeeEEEEecCchhhhc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred C Q lcl|NC_018837. 166 R 166 (166) Q Consensus 166 R 166 (166) | T Consensus 161 r 161 (161) T protein:vir:10 161 R 161 (161) T ss_pred C Confidence 9 No 2 >protein:vir:79571 Length: 137 # NCBI annotation: putative tail component # Family: family:all:911 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272522;genbank:gi:148609391;genbank:GeneID:5204407 Probab=97.72 E-value=1e-06 Score=53.42 Aligned_cols=132 Identities=19% Similarity=0.222 Sum_probs=95.5 Q ss_pred CCCcccchhhHHHHHHHHHHHHhcCCCchhhhhhhccccccceeeehhhhcccceeEEEe--cCCCccccCCcceeeeee Q lcl|NC_018837. 1 MTTPVMNHRASIAVALKDRIISELDGSKPELYFTNLYGNASTRIYKFEEINEFPYVGIAL--GSETFSYLPSAQQEVWLE 78 (166) Q Consensus 1 ~~~~~M~HRaSIa~a~vdri~~eldgs~pd~YftnlygNvs~~~ykfeei~eFPyv~v~l--G~Et~~YlPsgqqwmfLe 78 (166) |..|.--|. -||++++|++++.+.+. ..||+- +.-.+| ++|+|+|+|.| +.-++.|+=.++ | =-+ T Consensus 1 ~~~~M~iht-~IR~~Vid~L~~~l~~~--~~ffdG-------rP~fiD-e~ElPAVAV~l~da~~~~~~ld~~~-W-~A~ 67 (137) T protein:vir:79 1 MADPMNRHT-QIRQVVLARLREQCGDS--ATFFDG-------LPAFVD-AQELPAVSVWLSDAQYTGKMTDEDD-W-QAV 67 (137) T ss_pred CCchhHHHH-HHHHHHHHHHHhhcCCc--EEEeCC-------ccceec-hhhCcEEEEEeecCCCCcceecCCe-e-EEE Confidence 888866665 69999999999999773 335532 233344 59999999999 566778887776 4 368 Q ss_pred eEEeeEecccccHHHHHHHHHHH-HHHhhhCCCceEEEEe--CCCCCccceeeeeEEEEEecccccccccccceeeEEEe Q lcl|NC_018837. 79 LLVYAFVREQVNVQAELENIISD-IKTVVDTGGNLSYTVN--TPDGSSYPWSIIEWRIASVDTDEGLLAPHGLGQISISV 155 (166) Q Consensus 79 L~i~ay~ke~~~~qeeLE~li~D-IKTviDTggnleyTv~--tP~Gs~~p~eat~m~i~Sv~TDEGlL~P~g~~evsi~v 155 (166) |-|.+|-|. ..-+.+|.++.+. |+-|+.....|+=.++ .+.|=.|.....+.+= |-+.+.-.| T Consensus 68 LhI~iyLka-~~~ds~LD~~~E~~I~~v~~~~~~l~~l~~~~~~~gY~Y~rD~e~~tW-------------~sadL~y~I 133 (137) T protein:vir:79 68 LHIAVFIRA-QAPDSELDMWMESTIFPALNDVPALSGLIDTLIPLGFNYQRDNEMATW-------------AMAEITYQI 133 (137) T ss_pred EEEEEEeec-CCCHHHHHHHHHHHHHHhhcchhhhhhHhhhhhcccCCccccccccee-------------EEEEEEEEE Confidence 999999999 8889999999987 8877777766652233 4567777665554433 334566777 Q ss_pred eccC Q lcl|NC_018837. 156 KYAP 159 (166) Q Consensus 156 ~y~~ 159 (166) .|-. T Consensus 134 tYe~ 137 (137) T protein:vir:79 134 TYTN 137 (137) T ss_pred EEcC Confidence 7776 No 3 >protein:vir:3428 Length: 131 # NCBI annotation: tail component # Family: family:all:911 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040591;genbank:gi:9626255;genbank:GeneID:2703486 Probab=96.71 E-value=4.9e-05 Score=44.22 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=89.4 Q ss_pred cchhhHHHHHHHHHHHHhcCCCchhhhhhhccccccceeeehhhhcccceeEEEe--cCCCccccCCcceeeeeeeEEee Q lcl|NC_018837. 6 MNHRASIAVALKDRIISELDGSKPELYFTNLYGNASTRIYKFEEINEFPYVGIAL--GSETFSYLPSAQQEVWLELLVYA 83 (166) Q Consensus 6 M~HRaSIa~a~vdri~~eldgs~pd~YftnlygNvs~~~ykfeei~eFPyv~v~l--G~Et~~YlPsgqqwmfLeL~i~a 83 (166) |.|.. ||++++|++++.+.+- .||++ +.-.+| =+|+|+|+|.| +.-++.|+= +-+|- -+|-|.+ T Consensus 1 ~~ht~-IR~~Vid~L~~~l~~v---~~fdG-------~P~fid-e~ElPAVAV~l~d~~~~~~~ld-~~~w~-A~LhI~i 66 (131) T protein:vir:34 1 MKHTE-LRAAVLDALEKHDTGA---TFFDG-------RPAVFD-EADFPAVAVYLTGAEYTGEELD-SDTWQ-AELHIEV 66 (131) T ss_pred CchHH-HHHHHHHHHhccCCce---EEecC-------Cceeec-cccCcEEEEEeecCCCCcceec-CCeeE-EEEEEEE Confidence 99964 9999999999998764 37754 444556 56999999999 455677776 34453 5899999 Q ss_pred EecccccHHHHHHHHHHH-HHHhhhCCCceEEEEe--CCCCCccceeeeeEEEEEecccccccccccceeeEEEeeccC Q lcl|NC_018837. 84 FVREQVNVQAELENIISD-IKTVVDTGGNLSYTVN--TPDGSSYPWSIIEWRIASVDTDEGLLAPHGLGQISISVKYAP 159 (166) Q Consensus 84 y~ke~~~~qeeLE~li~D-IKTviDTggnleyTv~--tP~Gs~~p~eat~m~i~Sv~TDEGlL~P~g~~evsi~v~y~~ 159 (166) |-|. ..-+.+|.++.+. |+.|+.....|+=.++ .+.|=.|.....+.+=. -+.+.-.|.|.= T Consensus 67 yLka-~~~ds~LD~~~E~~i~~v~~~~~~l~~l~~~~~~~gy~Y~rD~e~~tW~-------------sadL~y~ItY~~ 131 (131) T protein:vir:34 67 FLPA-QVPDSELDAWMESRIYPVMSDIPALSDLITSMVASGYDYRRDDDAGLWS-------------SADLTYVITYEM 131 (131) T ss_pred Eeec-CCCHHHHHHHHHHHhHHHhhcchhhhhHhhhhhhccCCcccccccceEE-------------EEEEEEEEEEeC Confidence 9999 5789999999887 8889887777663343 45666666554443322 234555555554 No 4 >protein:vir:397 Length: 132 # NCBI annotation: gp12 # Family: family:all:911 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046907;genbank:gi:9630477;genbank:GeneID:1261651 Probab=95.10 E-value=0.00083 Score=37.48 Aligned_cols=127 Identities=24% Similarity=0.278 Sum_probs=81.8 Q ss_pred cchhhHHHHHHHHHHHHhcCCCchhhhhhhccccccceeeehhhhcccceeEEEe--cCCCccccCCcceeeeeeeEEee Q lcl|NC_018837. 6 MNHRASIAVALKDRIISELDGSKPELYFTNLYGNASTRIYKFEEINEFPYVGIAL--GSETFSYLPSAQQEVWLELLVYA 83 (166) Q Consensus 6 M~HRaSIa~a~vdri~~eldgs~pd~YftnlygNvs~~~ykfeei~eFPyv~v~l--G~Et~~YlPsgqqwmfLeL~i~a 83 (166) |.|. -||++++|++++.+++. ..||+. +.-.+| =+|+|+|+|.| +.-++.|+= +-+|- -+|-|.+ T Consensus 1 ~~ht-~IR~~Vid~L~~~l~~~--~~ffdG-------rP~fiD-e~elPAVAV~l~d~~~~~~~ld-~~~w~-A~LhI~i 67 (132) T protein:vir:39 1 MKHR-DIRKVIIDALESAIGTD--AIYFDG-------RPAVLE-EGDFPAVAVYLTDAEYTGEELD-ADTWQ-AILHIEV 67 (132) T ss_pred CchH-HHHHHHHHHHHhhCCCc--eEEecC-------cceeec-cccCcEEEEEeecCCCCcceec-CCeeE-EEEEEEE Confidence 9996 49999999999999773 446643 444556 67999999999 455677776 44553 5899999 Q ss_pred EecccccHHHHHHHHHHHH-HHhhhCCCceEEEEe--CCCCCccceeeeeEEEEEecccccccccccceeeEEEeeccC Q lcl|NC_018837. 84 FVREQVNVQAELENIISDI-KTVVDTGGNLSYTVN--TPDGSSYPWSIIEWRIASVDTDEGLLAPHGLGQISISVKYAP 159 (166) Q Consensus 84 y~ke~~~~qeeLE~li~DI-KTviDTggnleyTv~--tP~Gs~~p~eat~m~i~Sv~TDEGlL~P~g~~evsi~v~y~~ 159 (166) |-|... -+.+|.++.+.| .-+|.....|+=.++ .++|=.|.....+.+=.| +.+.-.|.|.= T Consensus 68 yLka~~-~ds~LD~~aE~~i~p~i~~~~~l~~l~~~~~~~gy~Y~rD~~~atW~s-------------adL~y~ItY~~ 132 (132) T protein:vir:39 68 FLEAQV-PDSELDDWMETRVYPVLAEVPGLESLITTMVQQGYDYQRDDDMALWSS-------------ADLKYSITYDM 132 (132) T ss_pred EeecCC-CHHHHHHHHHHHhHhhhcccchhhhHhhhhhhcCCCcccccccceEEE-------------EEEEEEEEEeC Confidence 999965 588888887755 223332222222222 356666666554433222 33455555554 No 5 >protein:vir:102955 Length: 138 # NCBI annotation: hypothetical protein # Family: family:all:1535 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945290;genbank:gi:39653725;uniprot:Q708M2;genbank:GeneID:2672869 Probab=12.33 E-value=5.1 Score=16.69 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=61.3 Q ss_pred ccchhhHHHHHHHHHHHHhcCCCchhhhhhhccccccceeeehhhhc---ccceeEEEecCCCccccCCcceeeeeeeEE Q lcl|NC_018837. 5 VMNHRASIAVALKDRIISELDGSKPELYFTNLYGNASTRIYKFEEIN---EFPYVGIALGSETFSYLPSAQQEVWLELLV 81 (166) Q Consensus 5 ~M~HRaSIa~a~vdri~~eldgs~pd~YftnlygNvs~~~ykfeei~---eFPyv~v~lG~Et~~YlPsgqqwmfLeL~i 81 (166) .-+.--+|++||-..++.+..+. + .|.|+|. ++|..-|.+=+-+..=.+++.++--+..-| T Consensus 1 ~~~~~~~I~~aI~~~Lk~~fpd~-------~---------Iy~e~i~Qgf~~PcFFI~ll~~~~~~~~~~r~~r~~~~dI 64 (138) T protein:vir:10 1 MANKGFRLVEELVSHIKGLYPDI-------R---------IYLDEVEQGFKEPCFFIHVVDTKYTPEANKYVKVRSKVDL 64 (138) T ss_pred CCcchhhhHHHHHHHHHHhcCCc-------e---------eeecccccCCcCCeEEEEEecccCccccCceEEEEEEEEE Confidence 22344567777766666665221 2 2335563 789999999888888888999888888888 Q ss_pred eeEeccc-----ccHHHHHHHHHHHHHHhhhCCCceEEEEeCCCCCccceeeeeEEEEEecccccccccccceeeEEEee Q lcl|NC_018837. 82 YAFVREQ-----VNVQAELENIISDIKTVVDTGGNLSYTVNTPDGSSYPWSIIEWRIASVDTDEGLLAPHGLGQISISVK 156 (166) Q Consensus 82 ~ay~ke~-----~~~qeeLE~li~DIKTviDTggnleyTv~tP~Gs~~p~eat~m~i~Sv~TDEGlL~P~g~~evsi~v~ 156 (166) .-|-++. -+++++|+....+|-++ .|-|.+++| +| |.|| ..+.++ T Consensus 65 ~Yfp~~~~~~e~~~v~e~L~~~f~~~~~i--~~~~~~~~I------------~D----------gVLh------f~f~~~ 114 (138) T protein:vir:10 65 SYFPPKKKRSECLAMQEELSYKLLHLPTI--HLFDRQYEV------------VD----------NVLH------CIFNAS 114 (138) T ss_pred EEecCcchhHHHHHHHHHHHHHHhhcCee--eeecceeeE------------Ec----------CeEE------EEEEEE Confidence 8664332 13566676666665322 122222222 21 2222 122222 Q ss_pred ccCc----cccccC Q lcl|NC_018837. 157 YAPP----RLALRR 166 (166) Q Consensus 157 y~~~----~~~~rR 166 (166) |..- ....+. T Consensus 115 ~~~~k~~~~~~M~~ 128 (138) T protein:vir:10 115 TRLKLEEEDIKQRE 128 (138) T ss_pred EEEeeecCccchhh Confidence 2111 111111 No 6 >protein:vir:1244 Length: 145 # NCBI annotation: similar to phage Spp1 gp17 # Family: family:all:296 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510943;genbank:gi:17426277;genbank:GeneID:927402 Probab=11.21 E-value=5.7 Score=16.43 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=69.5 Q ss_pred cchhhHHHHHHHHHHHHhcCCCch-hhhh-hhccccccceeeehhhhcccceeEEEecCCCccccCCcceeeeeeeEEee Q lcl|NC_018837. 6 MNHRASIAVALKDRIISELDGSKP-ELYF-TNLYGNASTRIYKFEEINEFPYVGIALGSETFSYLPSAQQEVWLELLVYA 83 (166) Q Consensus 6 M~HRaSIa~a~vdri~~eldgs~p-d~Yf-tnlygNvs~~~ykfeei~eFPyv~v~lG~Et~~YlPsgqqwmfLeL~i~a 83 (166) |.- |...+|.+.|.+.|.+... ..-. -++|-++-. . ..||||.+|=...++..--++..+ =..+.|-| T Consensus 1 M~~--s~~~aLq~ai~~~L~ad~~l~~lvg~~vyD~~P~------~-~~~PyV~lG~~~~~~~~t~~~~~~-~~~lti~V 70 (145) T protein:vir:12 1 MWV--SVERYLFNKVYNKLKSNPIIQKQLGGRVFDCVQK------D-AVYPYIVVGETNVTNKETTTSMVE-DVGITLHV 70 (145) T ss_pred Ccc--cHHHHHHHHHHHHhhcChhHHHhcCcccccCCcc------C-CCCCEEEeccceeeecCCCcccce-EEEEEEEE Confidence 433 4555555555555543211 0000 034444442 2 369998877666666665544433 34456677 Q ss_pred EecccccHHHHHHHHHHHHHHhhhCCCceEEEEeCCCCCccceeeeeEEEEEeccc-ccccccccceeeEEEeeccCccc Q lcl|NC_018837. 84 FVREQVNVQAELENIISDIKTVVDTGGNLSYTVNTPDGSSYPWSIIEWRIASVDTD-EGLLAPHGLGQISISVKYAPPRL 162 (166) Q Consensus 84 y~ke~~~~qeeLE~li~DIKTviDTggnleyTv~tP~Gs~~p~eat~m~i~Sv~TD-EGlL~P~g~~evsi~v~y~~~~~ 162 (166) |.++.. .+|...+.+.|+...+- . ++.++++---+.... +.+-.| +|.+ =||+=.+-+.|+..--.. T Consensus 71 ws~~~g--r~ea~~ia~ai~~aL~~--~----l~l~~~~lv~l~~~~---~~~~rd~d~~~-~hgvl~~ra~i~~~~~~~ 138 (145) T protein:vir:12 71 YSQARN--RDEASQIIQFLGFVLNN--E----IEIDYYSFIKSRIDT---QEVITDIDQYT-KHGIIRLVFKYRHNTLQR 138 (145) T ss_pred EEcCcc--HHHHHHHHHHHHHHhcc--c----cCCCCceEEEEEEee---EEEEecCCCce-EEEEEEEEEEEEeCCccc Confidence 777665 46678899999988862 2 344443322222222 223233 3332 366655555555443332 Q ss_pred cccC Q lcl|NC_018837. 163 ALRR 166 (166) Q Consensus 163 ~~rR 166 (166) +.-. T Consensus 139 ~~~~ 142 (145) T protein:vir:12 139 SVTN 142 (145) T ss_pred cccc Confidence 2222 No 7 >protein:vir:4907 Length: 128 # NCBI annotation: gp128 # Family: family:all:504 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056685;genbank:gi:9635020;genbank:GeneID:1262660 Probab=10.53 E-value=6.1 Score=16.26 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=65.8 Q ss_pred CCCcccchhhHHHHHHHHHHHHhcCCCchhhhhhhccccccceeeeh---hhhcccceeEEEecCCCccccCCcceeeee Q lcl|NC_018837. 1 MTTPVMNHRASIAVALKDRIISELDGSKPELYFTNLYGNASTRIYKF---EEINEFPYVGIALGSETFSYLPSAQQEVWL 77 (166) Q Consensus 1 ~~~~~M~HRaSIa~a~vdri~~eldgs~pd~YftnlygNvs~~~ykf---eei~eFPyv~v~lG~Et~~YlPsgqqwmfL 77 (166) |.+| .++|-|.+-+.+.+.-. + .|.+ |++ .||||.||==..++..-=++..|- + T Consensus 1 m~sp--------~q~L~~~~f~~l~~~g~---------~----vyD~lP~~~v-~YPfV~ig~~~~~~~~tKt~~~g~-v 57 (128) T protein:vir:49 1 MKQP--------DQLLHDEMYRISCELGY---------N----TYTYLPPDDA-AYPFVVMGETMVLPQSTKSHLIGR-L 57 (128) T ss_pred CCch--------HHHHHHHHHHHHHhcCC---------c----eecccCCCCC-CCCEEEeeeeeecCCccccccccE-E Confidence 5555 45555555554433211 1 2222 444 899999987666666554444432 5 Q ss_pred eeEEeeEecccccHHHHHHHHHHHHHHhhhCCCceEEEEeCCCCCccceeeeeEEEEE---ecccccccccccceeeEEE Q lcl|NC_018837. 78 ELLVYAFVREQVNVQAELENIISDIKTVVDTGGNLSYTVNTPDGSSYPWSIIEWRIAS---VDTDEGLLAPHGLGQISIS 154 (166) Q Consensus 78 eL~i~ay~ke~~~~qeeLE~li~DIKTviDTggnleyTv~tP~Gs~~p~eat~m~i~S---v~TDEGlL~P~g~~evsi~ 154 (166) .|.|-||.+.+. ..|...++++|.-+.-.. ..-+|-.|-+...++-+.. -+||.=|+ ||+ |.++ T Consensus 58 ~ltihVW~~~~~--R~ev~~i~~~i~~~l~~~-------~~t~~y~f~~~i~~s~~~~~~D~st~~~L~--Hgv--l~l~ 124 (128) T protein:vir:49 58 SSTVHVWGRVDD--RKTLSDMAGQLMSSFFAI-------KNIGGKQFSAEINQSSIDSNRDNSTDEVLY--HFV--IYTY 124 (128) T ss_pred EEEEEEEeCCCC--chhHHHHHHHHHHHhhcc-------cccCCeEEEEEeccceEEEEeecCCCccee--eEE--EEEE Confidence 688888887766 456777888877665322 1223434433444433322 23443344 554 5555 Q ss_pred eecc Q lcl|NC_018837. 155 VKYA 158 (166) Q Consensus 155 v~y~ 158 (166) .++= T Consensus 125 f~~~ 128 (128) T protein:vir:49 125 FKFV 128 (128) T ss_pred EEeC Confidence 5554 No 8 >protein:vir:2741 Length: 128 # NCBI annotation: hypothetical protein # Family: family:all:504 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695114;genbank:gi:23455883;genbank:GeneID:955650 Probab=9.73 E-value=6.7 Score=16.06 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=63.7 Q ss_pred CCCcccchhhHHHHHHHHHHHHhcCCCchhhhhhhccccccceeeeh---hhhcccceeEEEecCCCccccCCcceeeee Q lcl|NC_018837. 1 MTTPVMNHRASIAVALKDRIISELDGSKPELYFTNLYGNASTRIYKF---EEINEFPYVGIALGSETFSYLPSAQQEVWL 77 (166) Q Consensus 1 ~~~~~M~HRaSIa~a~vdri~~eldgs~pd~YftnlygNvs~~~ykf---eei~eFPyv~v~lG~Et~~YlPsgqqwmfL 77 (166) |.+| .++|-+.+-+.|... -.+ .|.+ |++ .||||.+|==..++..-=++.-| =+ T Consensus 1 M~sp--------~qeL~~~lf~~l~~~---------g~~----vyD~lP~~~~-~YPfV~ig~~~~~~~~tkt~~~g-~~ 57 (128) T protein:vir:27 1 MKQP--------DQLLHDEMYRISCEL---------GYN----TYTYLPPDDA-AYPFVVMGETMVLPQSTKSHLIG-RL 57 (128) T ss_pred CCCH--------HHHHHHHHHHHHHhc---------CCc----eeccCCCCCC-CcCEEEeccceecCCcccccccc-EE Confidence 5555 455555555544321 122 2322 444 89999987655555544333222 25 Q ss_pred eeEEeeEecccccHHHHHHHHHHHHHHhhhCCCceEEEEeCCCCCccceeeeeEEEE---EecccccccccccceeeEEE Q lcl|NC_018837. 78 ELLVYAFVREQVNVQAELENIISDIKTVVDTGGNLSYTVNTPDGSSYPWSIIEWRIA---SVDTDEGLLAPHGLGQISIS 154 (166) Q Consensus 78 eL~i~ay~ke~~~~qeeLE~li~DIKTviDTggnleyTv~tP~Gs~~p~eat~m~i~---Sv~TDEGlL~P~g~~evsi~ 154 (166) +|.|-||.+.+. ..|+..++++|.-..... +. -+|-.|=....++-+. .-+|| +.|. ||+ |.++ T Consensus 58 ~l~i~vW~~~~~--R~~v~~i~~~i~~~~~~~------~~-t~~y~~~~~~~~~~~qil~Dtst~-~~l~-Hgi--i~l~ 124 (128) T protein:vir:27 58 SSTVHVWGHVDD--RKTLSDMAGQLMSSFFAI------KK-IGGKQFSAEVNESSIDSNRDNSTD-EVLY-HFI--IYTY 124 (128) T ss_pred EEEEEEEECCcc--hhHHHHHHHHHHHHhccc------cc-cCCeeEEEEeecceEEEeeecCCC-ceee-EEE--EEEE Confidence 688888887766 567788888887665332 11 1332222222333222 23444 4444 655 5555 Q ss_pred eecc Q lcl|NC_018837. 155 VKYA 158 (166) Q Consensus 155 v~y~ 158 (166) .++= T Consensus 125 f~~~ 128 (128) T protein:vir:27 125 FKFI 128 (128) T ss_pred EEeC Confidence 5554 No 9 >protein:vir:96125 Length: 140 # NCBI annotation: ORF038 # Family: family:all:296 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240084;genbank:gi:66395765;genbank:GeneID:5133106 Probab=7.27 E-value=9.2 Score=15.30 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=74.5 Q ss_pred CCCcccchhhHHHHHHHHHHHHhcCCCchhhhhh-hccccccceeeehhhhcccceeEEEecCCCccccCCcceeeeeee Q lcl|NC_018837. 1 MTTPVMNHRASIAVALKDRIISELDGSKPELYFT-NLYGNASTRIYKFEEINEFPYVGIALGSETFSYLPSAQQEVWLEL 79 (166) Q Consensus 1 ~~~~~M~HRaSIa~a~vdri~~eldgs~pd~Yft-nlygNvs~~~ykfeei~eFPyv~v~lG~Et~~YlPsgqqwmfLeL 79 (166) |. |.==+.+..||.++++.- ..+-.... ++|-++-. . -.||||.+|=...++.=-.++..| -..+ T Consensus 1 ~~---msa~~aLq~Ai~~~L~ad---~~l~alvggrVyD~~P~------~-~~~PYV~lG~~~~~~~~~~~~~g~-~~~~ 66 (140) T protein:vir:96 1 MW---VTAEPLLYNKIMNNLIEN---PITDKLVGGRVFDCVQK------D-VVYPYIVVGESNVTESERSPGMRE-IIAI 66 (140) T ss_pred Cc---cchhHHHHHHHHHHhccC---hhHHhhcCcccccCCcc------C-CCCCEEEeCCceeeecCCCcccce-EEEE Confidence 21 333334666777776632 11111111 24444332 1 369999887666666654444433 3445 Q ss_pred EEeeEecccccHHHHHHHHHHHHHHhhhCCCceEEEEeCCCCCccceeeeeEEEEEeccc-ccccccccceeeEEEeecc Q lcl|NC_018837. 80 LVYAFVREQVNVQAELENIISDIKTVVDTGGNLSYTVNTPDGSSYPWSIIEWRIASVDTD-EGLLAPHGLGQISISVKYA 158 (166) Q Consensus 80 ~i~ay~ke~~~~qeeLE~li~DIKTviDTggnleyTv~tP~Gs~~p~eat~m~i~Sv~TD-EGlL~P~g~~evsi~v~y~ 158 (166) .|-|+.+... .+|...+.+-|....| ..| +.+. |.+-...+.-+.+-.| +|.. =||+=.+.+.|++. T Consensus 67 tl~Vws~~~g--~~ea~~ia~ai~~aL~--~~l----~l~~---~~lv~l~~~~~~~~rd~dg~t-~hgvl~~ra~ve~~ 134 (140) T protein:vir:96 67 TFHVYSQYEN--GAEARELLKYLNYACR--LNI----NFKD---YELEWIKKDNSQVFTDIDQYT-KHGVLRLLYKVRHK 134 (140) T ss_pred EEEEEEcCCC--HHHHHHHHHHHHHHhc--CCc----cCCC---ceEEEEEEeeeEEeecCCCce-EEEEEEEEEEEeec Confidence 5667766555 4556888899999996 333 2222 3344444444555555 3333 47776666777666 Q ss_pred Cccccc Q lcl|NC_018837. 159 PPRLAL 164 (166) Q Consensus 159 ~~~~~~ 164 (166) .-+.+. T Consensus 135 ~~~~~~ 140 (140) T protein:vir:96 135 TLQERV 140 (140) T ss_pred ccccCC Confidence 555444 No 10 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=5.23 E-value=6.8 Score=16.01 Aligned_cols=151 Identities=11% Similarity=0.034 Sum_probs=50.1 Q ss_pred hHHHHHHHHHHHHh---cCCCc------------hhhhhhhccccccceeeehhhhcccce------------eEEEecC Q lcl|NC_018837. 10 ASIAVALKDRIISE---LDGSK------------PELYFTNLYGNASTRIYKFEEINEFPY------------VGIALGS 62 (166) Q Consensus 10 aSIa~a~vdri~~e---ldgs~------------pd~YftnlygNvs~~~ykfeei~eFPy------------v~v~lG~ 62 (166) -+|-++|++.+++- |-.++ |+.++++|..| +.||=.......+ ..+++.. T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w---~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~ 77 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERN---LRQYEGDYPQVEYINSQGKIQERDYMTLNLRK 77 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHH---HHHhcCCCcccccccccccccccceeecCcHH Confidence 23444444444331 11122 33333333322 2222111111111 1111111 Q ss_pred CCccccCCcceeeeeeeEEeeEeccc---------ccHHHHHHHHHHHHHHhhhCCCceEEEEeCCCCCccceee-eeEE Q lcl|NC_018837. 63 ETFSYLPSAQQEVWLELLVYAFVREQ---------VNVQAELENIISDIKTVVDTGGNLSYTVNTPDGSSYPWSI-IEWR 132 (166) Q Consensus 63 Et~~YlPsgqqwmfLeL~i~ay~ke~---------~~~qeeLE~li~DIKTviDTggnleyTv~tP~Gs~~p~ea-t~m~ 132 (166) ---+-++ .-+|.|.+-.....++ ...|+.|+++++|-+-.-.-...+|+..-.-+|.-+||=- -... T Consensus 78 ~i~~~~A---~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~ 154 (517) T protein:vir:98 78 LSADVLS---GLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEIE 154 (517) T ss_pred HHHHHhh---hhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeCCeeE Confidence 1111111 2356676655554333 2367889988887432222222333333333333333211 1233 Q ss_pred EEEeccccccc-cc--ccceeeEEE-eecc---CccccccC Q lcl|NC_018837. 133 IASVDTDEGLL-AP--HGLGQISIS-VKYA---PPRLALRR 166 (166) Q Consensus 133 i~Sv~TDEGlL-~P--~g~~evsi~-v~y~---~~~~~~rR 166 (166) |..|+-|.-+- +- .|+-+..|. +-+. ....-.+| T Consensus 155 I~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~ 195 (517) T protein:vir:98 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTL 195 (517) T ss_pred EEEEcCCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEE Confidence 55555554321 11 122222211 0010 01101111 Done!