BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_018274.1_cdsid_YP_006560525.1 [gene=B614_gp28] [protein=phage uncharacterized protein] [protein_id=YP_006560525.1] [location=13700..15352] (550 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 1132 0.0 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 1092 0.0 gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hy... 357 e-100 gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hyp... 67 5e-13 gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 67 5e-13 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 50 7e-08 gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hyp... 41 4e-05 gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 40 6e-05 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 40 7e-05 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 40 8e-05 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 39 2e-04 gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 38 2e-04 gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: put... 37 5e-04 gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfW... 35 0.002 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 35 0.002 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 35 0.002 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 35 0.003 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 35 0.003 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 34 0.004 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 34 0.005 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 33 0.007 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 33 0.009 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 33 0.011 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 32 0.016 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 32 0.025 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 28 0.22 gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp6... 28 0.23 gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: h... 28 0.26 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 28 0.28 gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: pu... 27 0.49 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 27 0.59 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 26 1.3 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 26 1.3 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 26 1.3 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 26 1.3 gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: Te... 25 2.3 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 25 2.5 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 25 2.5 gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp... 25 2.9 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 25 3.0 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 1132 bits (2927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/550 (99%), Positives = 547/550 (99%) Query: 1 MKGSTRDFLADIAQLAGEFRRQIEAEVAGFDPDPKASAARRERASADYEYFARTYFPHYV 60 MKGSTRDFLADIAQLAGEFRRQIEAEVAGFDPDPKASA RRERASADYEYFARTYFPHYV Sbjct: 1 MKGSTRDFLADIAQLAGEFRRQIEAEVAGFDPDPKASAVRRERASADYEYFARTYFPHYV 60 Query: 61 KRGNALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLI 120 KRGNALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLI Sbjct: 61 KRGNALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLI 120 Query: 121 IMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR 180 IMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR Sbjct: 121 IMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR 180 Query: 181 MRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTI 240 MRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTI Sbjct: 181 MRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTI 240 Query: 241 LHYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWETWEELLLNSDDEGAAALAFYQERVA 300 LHYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWE WEELLLNSDDEGAAALAFYQER A Sbjct: 241 LHYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWEKWEELLLNSDDEGAAALAFYQERAA 300 Query: 301 AMEDGAIICWPDGQPLYKLMVKRARDGHSAFDSEQQNDPVQGENAPFAACITFWVNRLAQ 360 AMEDGAIICWPDGQPLYKLMVKRARDGHSAFDSEQQNDPVQGENAPFAACITFWVNRLAQ Sbjct: 301 AMEDGAIICWPDGQPLYKLMVKRARDGHSAFDSEQQNDPVQGENAPFAACITFWVNRLAQ 360 Query: 361 WMFYGACDPSLGKQGSSRDPSAILVGGFNRETGVLDVVEAAIRKRLPDKIIEDVIAMQRA 420 WMFYGACDPSLGKQGSSRDPSAILVGGFNRETGVLDVVEAAIRKRLPDKIIED+IAMQRA Sbjct: 361 WMFYGACDPSLGKQGSSRDPSAILVGGFNRETGVLDVVEAAIRKRLPDKIIEDIIAMQRA 420 Query: 421 YHCLVWGVEAVQFQEFLRTELVKRSAKAGCPVPARAITPHADKLLRIESLQPHMANGLIR 480 YHCLVWGVEAVQFQEFLRTELVKRSAKAGCPVPARAITPHADKLLRIESLQPHMANGLIR Sbjct: 421 YHCLVWGVEAVQFQEFLRTELVKRSAKAGCPVPARAITPHADKLLRIESLQPHMANGLIR 480 Query: 481 LHPSQTVLEQQLRHFPAADHDDGPDALHMLWMLATTGFAPIEATLVKRRHEYAPGLDDSF 540 LHPSQTVLEQQLRHFPAADHDDGPDALHMLWMLATTGFAPIEATLVKRRHEYAPGLDDSF Sbjct: 481 LHPSQTVLEQQLRHFPAADHDDGPDALHMLWMLATTGFAPIEATLVKRRHEYAPGLDDSF 540 Query: 541 DTGGRFGGAW 550 DTGGRFGGAW Sbjct: 541 DTGGRFGGAW 550 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 1092 bits (2825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/551 (96%), Positives = 534/551 (96%), Gaps = 1/551 (0%) Query: 1 MKGSTRDFLADIAQLAGEFRRQIEAEVAGFDPDPKASAARRERASADYEYFARTYFPHYV 60 MKGSTRDFLADIAQLAGEFRRQIEAEVAGFDPDPKASAARRERASADYEYFARTYFPHYV Sbjct: 1 MKGSTRDFLADIAQLAGEFRRQIEAEVAGFDPDPKASAARRERASADYEYFARTYFPHYV 60 Query: 61 KRGNALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLI 120 KRGNALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLI Sbjct: 61 KRGNALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLI 120 Query: 121 IMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR 180 IMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR Sbjct: 121 IMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR 180 Query: 181 MRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTI 240 MRGLRHGPHRPDLV+GDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTI Sbjct: 181 MRGLRHGPHRPDLVVGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTI 240 Query: 241 LHYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWETWEELLLNSDDEGAAALAFYQERVA 300 LHYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWE WEELLLNSDDEG AAL FYQER A Sbjct: 241 LHYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWEKWEELLLNSDDEGVAALEFYQERAA 300 Query: 301 AMEDGAIICWPDGQPLYKLMVKRARDGHSAFDSEQQNDPVQGENAPFAACITFWVNRLAQ 360 AMEDGAIICWPDGQPLYKLMVKRARDGHSAFDSEQQNDPVQGENAPFAACITFWVNRLAQ Sbjct: 301 AMEDGAIICWPDGQPLYKLMVKRARDGHSAFDSEQQNDPVQGENAPFAACITFWVNRLAQ 360 Query: 361 WMFYGACDPSLGKQGSSRDPSAILVGGFNRETGVLDVVEAAIRKRLPDKIIEDVIAMQRA 420 WMFYGACDPSLGKQGSSRDPSAILVGGFNRETGVLDVVEAAIRKRLPDKIIED+IAMQRA Sbjct: 361 WMFYGACDPSLGKQGSSRDPSAILVGGFNRETGVLDVVEAAIRKRLPDKIIEDIIAMQRA 420 Query: 421 YHCLVWGVEAVQFQEFLRTELVKRSAKAGCPVPARAITPHADKLLRIESLQPHMANGLIR 480 YHCLVWGVEAVQFQEFLRTELVKRSAKAGCPVPARAITPHADKLLRIESLQPHMANGLIR Sbjct: 421 YHCLVWGVEAVQFQEFLRTELVKRSAKAGCPVPARAITPHADKLLRIESLQPHMANGLIR 480 Query: 481 LHPSQTVLEQQLRHFPAADHDDGPDALHMLWMLATTGFAPIEATLVKRRHEYAP-GLDDS 539 LHPSQTVLEQQLRHFPAADHDDGPDALHMLWMLATTGFA +E LV R+ + G DDS Sbjct: 481 LHPSQTVLEQQLRHFPAADHDDGPDALHMLWMLATTGFASMEFALVGRQGTTSSGGFDDS 540 Query: 540 FDTGGRFGGAW 550 FD GGR GG W Sbjct: 541 FDVGGRMGGDW 551 >gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469154;genbank:gi:157834997;genbank:Ge neID:5648803 Length = 591 Score = 357 bits (916), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/594 (36%), Positives = 321/594 (54%), Gaps = 47/594 (7%) Query: 1 MKGSTRDFLADIAQLAGEFRRQIEAEVAGFDPDPKASAARRERASAD--YEYFARTYFPH 58 M ++FL +++ +A + RR IEA+ G D P+A A RR R D +E+FA TYFPH Sbjct: 1 MNAEEKEFLRELSAMAQQLRRDIEAQQIGLDSSPEARAERRRRVLVDRDFEFFAYTYFPH 60 Query: 59 YVKRGNALLHDYLYKRLPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYP 118 +++ +L H + +KR P+L+ G E APRG AKS+L++++ + V+ G P Sbjct: 61 HIRPPASLFHAHFFKRFPQLISSSSGLKEWWVAPRGEAKSSLLTKVGPCYVVVQGLLQRP 120 Query: 119 LI------------------IMDAFEQAAT-MLEAIKAELEFNPRLAMDFPQGAGKGRVW 159 I ++ A + T +LE +K EL N L++DFP+ GKG VW Sbjct: 121 EIRAELGMTGPAPYFVDYITLLGAETRLPTKLLEVVKTELLVNASLSLDFPEVCGKGSVW 180 Query: 160 QVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLK 219 ++G V+ + K++ FG+ + +RG HG RP L++GDDL D+ +SP +R+ +WL+ Sbjct: 181 KIGEFVSLSGVKLEAFGAEQAIRGTFHGASRPKLLLGDDLITDKEAKSPTERNNRWDWLE 240 Query: 220 KTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAIIEWPHRMDLWETWEE 279 K + LG D ++ + +GT+L+ D +SR + F+AI +P MDLW EE Sbjct: 241 KAIDYLGPPDGSVKYLGVGTVLNKDDPISRAKRTVGHLVHHFRAIETFPTHMDLWAHCEE 300 Query: 280 LLLNSD---------------DEGAAALAFYQERVAAMEDGAIICWPDGQPLYKLMVKRA 324 ++LN D D + FYQ+ ME GA+ WP + LY LM +RA Sbjct: 301 VMLNDDKPVMEQYAERGSVAPDSALPSFQFYQDNREQMELGAVTSWPGVRSLYWLMRQRA 360 Query: 325 RDGHSAFDSEQQNDPVQGENAPFAACITFWVNRLAQWMFYGACDPSLGKQGSSRDPSAIL 384 ++ +AF +E Q DP E+ F FWV R +W +GACDPS+G S DPSAI+ Sbjct: 361 KN-KAAFATELQGDPRSDEDKTFTNP-RFWVMRSGRWQMFGACDPSVGASAQS-DPSAII 417 Query: 385 VGGFNRETGVLDVVEAAIRKRLPDKIIEDVIAMQRAYHCLVWGVEAVQFQEFLRTELVKR 444 VGG++ E VL+V+EAAI++R+P K+ D+I QR Y G E E R + K Sbjct: 418 VGGWDTEKQVLNVIEAAIKRRVPSKLESDLIKAQREYQMRAIGFENNGAFEIQRQNIAKA 477 Query: 445 SAKAGCPVPARAITPHADKLLRIESLQPHMANGL---IRLHPSQTVLEQQLRHFP---AA 498 + +P +T AD+ +RI++++P + + I P L +L +P Sbjct: 478 ALMQRVALPLIGVTSMADQSVRIDAMEPFINDAFAPRILFSPGLVALLDELDSWPEPQTG 537 Query: 499 DHDDGPDALHMLWMLATTGFAPIEATLVKRRHEY--APGLDDSFDTGGRFGGAW 550 H DG AL +LWM+A+T E T V R A GLDDSFDTGGRFGGAW Sbjct: 538 HHYDGLCALSILWMIASTRAGSFEFTAVPNRRNALEAGGLDDSFDTGGRFGGAW 591 >gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218809;genbank:gi:147917326;genbank:Ge neID:5142613 Length = 536 Score = 67.4 bits (163), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 12/239 (5%) Query: 41 RERASADYEYFARTYFPHYVKRGNALLHDYLYKRLPELVDHP-DGQHEAIAAPRGNAKST 99 RER D ++A P ++ + L+ L +L P + A+ PRG K+ Sbjct: 54 RERCRVDLNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTG 113 Query: 100 LVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVW 159 + +I W + G + LI+ + +A + + L P + F + V Sbjct: 114 FL-KILTCWFIHFGYAEFILIVCASEPKAVAFITDVDNMLS-QPNIEEIFGLWSATKSVD 171 Query: 160 QVGTIVTANDAKVQVF---GSGKRMRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLEN 216 V + KV + G+G +RG RPDL++ DD++ E S Q L Sbjct: 172 NAKKKVGTINGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLE 231 Query: 217 WLKKTVL-SLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAIIE-----WPH 269 W T++ + + +I +G + D +L L KNP W AI+E WP Sbjct: 232 WFTATLVKCIDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPE 290 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 67.0 bits (162), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 12/239 (5%) Query: 41 RERASADYEYFARTYFPHYVKRGNALLHDYLYKRLPELVDHP-DGQHEAIAAPRGNAKST 99 RER D ++A P ++ + L+ L +L P + A+ PRG K+ Sbjct: 54 RERCRVDLNFYAGLIIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFALGLPRGFVKTG 113 Query: 100 LVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMDFPQGAGKGRVW 159 + +I W + G + LI+ + +A + + L P + F + V Sbjct: 114 FL-KILTCWFIHFGYAEFILIVCASEPKAVAFITDVDNMLS-QPNIEEIFGLWSATKSVD 171 Query: 160 QVGTIVTANDAKVQVF---GSGKRMRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLEN 216 V + KV + G+G +RG RPDL++ DD++ E S Q L Sbjct: 172 NAKKKVGTINGKVVILLPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLE 231 Query: 217 WLKKTVL-SLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAIIE-----WPH 269 W T++ + + +I +G + D +L L KNP W AI+E WP Sbjct: 232 WFTATLVKCIDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWISLVTGAILEDGESLWPE 290 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 50.1 bits (118), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 7/154 (4%) Query: 366 ACDPSLGKQGSSRDPSAILVGGFNRETGVLDVVEAAIRKRLPDKIIEDVIAMQRAYHCLV 425 DP++ ++ ++ D + + VGG++ + L + + K P + I+ + + Y Sbjct: 390 VVDPAVSQKKTA-DNTVLTVGGYDNDKN-LYIFDVKAGKFTPSETIKHIFTLADKYKLNA 447 Query: 426 WGVEAVQFQEFLRTELVKRSAKAGCPVPARAITPHADKLLRIES-LQPHMANGLIRLHPS 484 +E V L + VK + K P+ R P DK RI + L+PH N I + Sbjct: 448 VTLETVGGFALLSYQ-VKDAFKTHRPLAIREYRPKGDKQGRITAMLEPHWTNKSIYMQSY 506 Query: 485 QTV---LEQQLRHFPAADHDDGPDALHMLWMLAT 515 + L+ +L FP + HDD D ++ L+T Sbjct: 507 LAIMPELKDELDSFPLSKHDDVVDTFAIICELST 540 Score = 30.8 bits (68), Expect = 0.047, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 19/28 (67%) Query: 83 DGQHEAIAAPRGNAKSTLVSQIFVIWCV 110 D + + APRG+ KST+ S ++V+W + Sbjct: 55 DNRRRLVLAPRGHLKSTVCSVLYVLWRI 82 >gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640322;genbank:gi:21234401;genbank:GeneID :956064 Length = 535 Score = 40.8 bits (94), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 21/196 (10%) Query: 366 ACDPSLGKQGSSRDPSAILVGGFNRETGV--LDVVEAAIRKRLPDKIIEDVIAMQRAYHC 423 AC + D +A+ + G +++ + LD+V +K P +++ + Sbjct: 346 ACQDFAYSVQTGSDWTALFILGMDKDKRIYILDIVRYQTKK--PSVYWKNLETAYNKWKF 403 Query: 424 LVWGVEAVQFQEFLRTELVKRSAKAGCPVPARAITPHA---DKLLRI-ESLQPHMANGLI 479 EAV QE + L + + K CP+ +A P++ DK RI ++L+P NG I Sbjct: 404 KWVRAEAVAAQEVIIEALREYAEKEQCPIRIKAYKPNSQSGDKETRISQTLEPLYENGDI 463 Query: 480 RLHPS--QTVLEQQLRHFPAADHDDGPDALHMLWMLATTGF----APIEATLVKRRHEYA 533 + +LE++L HDD D LH+ GF P+E + Y Sbjct: 464 YHYRGGLCDMLEEELTQ-DRPPHDDLKDCLHI-----GVGFDKLKPPVEDDDEEDYDNYH 517 Query: 534 -PGLDDSFDTGGRFGG 548 P S+D RFGG Sbjct: 518 DPHASYSYDPNNRFGG 533 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 40.0 bits (92), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 30/179 (16%) Query: 85 QHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPR 144 ++ + A RG AK+T+ + I+ ++C++ R H+ ++I + A + ++ F Sbjct: 66 KYRMVEAQRGQAKTTIAA-IYAVFCIIH-RPHFRILISSQTSKRAEEIAGWVIKI-FRGL 122 Query: 145 LAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGLRHGPH-------------RP 191 ++F + I + + A ++ F +RG P R Sbjct: 123 DILEF----------MMPDIYSGDKASIRGFEIHYTLRGSGASPSVACYSIEGSMQGARA 172 Query: 192 DLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 DL+I DD+E+ +N + R KLE K+ S + T D++ +GT +S+ + L Sbjct: 173 DLIIADDVESLQNSATAAGRVKLEEATKE----FESINQTGDILYLGTPQSINSIYNNL 227 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 40.0 bits (92), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 30/179 (16%) Query: 85 QHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPR 144 ++ I APRG AK+TL S I+ ++ ++ H P + Q A E I + R Sbjct: 66 KYRLIEAPRGIAKTTL-SAIYTVFRII----HEPHKRIMVVSQNAKRAEEIAGWVVKIFR 120 Query: 145 LAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGLRHGPH-------------RP 191 +DF + + + I + A V+ F +RG P R Sbjct: 121 -GLDFLE-------FMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARA 172 Query: 192 DLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 D+++ DD+E+ +N R+ R LE K+ S + D+I +GT + +S+ + L Sbjct: 173 DIILADDVESMQNARTAAGRALLEELTKE----FESINQFGDIIYLGTPQNVNSIYNNL 227 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 39.7 bits (91), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 30/179 (16%) Query: 85 QHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPR 144 ++ I APRG AK+TL S I+ ++ ++ H P + Q A E I + R Sbjct: 66 KYRLIEAPRGIAKTTL-SAIYTVFRII----HEPHKRIMVVSQNAKRAEEIAGWVVKIFR 120 Query: 145 LAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGLRHGPH-------------RP 191 +DF + + + I + A V+ F +RG P R Sbjct: 121 -GLDFLE-------FMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARA 172 Query: 192 DLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 D+++ DD+E+ +N R+ R LE K+ S + D+I +GT + +S+ + L Sbjct: 173 DIILADDVESMQNARTAAGRALLEELTKE----FESINQFGDIIYLGTPQNVNSIYNNL 227 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 12/132 (9%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 +AA RG AKST ++ I+V+WC++ + +++ + ++A + I + LA Sbjct: 55 VAAQRGEAKST-IACIYVVWCIVRDPRTRAMLVSGSGDKAEENGQLITKLIMHWDLLAYL 113 Query: 149 FPQGAGKGRVWQVGTIVT------ANDAKVQVFGSGKRMRGLRHGPHRPDLVIGDDLEND 202 P+ R V A + G ++G +R D++I DD+E Sbjct: 114 RPEARMGDRTSATSFDVNWALKGVEKSASINCIGITAALQG-----YRADILIPDDIETT 168 Query: 203 ENVRSPEQRDKL 214 +N + +R KL Sbjct: 169 KNGLTATERAKL 180 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 18/174 (10%) Query: 85 QHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPR 144 Q +AA RG AKST ++ +F +W ++ H +++ A ++A + + + P Sbjct: 51 QRSMVAAQRGEAKST-IACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPL 109 Query: 145 LAMDFPQGAGKGRV--------WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVIG 196 L P R W + + A V G ++G +R DL+I Sbjct: 110 LQYLAPDKYAGDRTSVLEFDVHWSLKGV--DKSASVNCLGITSSLQG-----YRGDLLIP 162 Query: 197 DDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 DD+E +N + +R KL L K S+ AD ++ +GT +S+ + L Sbjct: 163 DDIETTKNGLTATERAKLIT-LSKEFTSI-VADRNGRILYLGTPQTRESIYNTL 214 >gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877482;genbank:gi:33300854;uniprot:Q7Y2C2 ;genbank:GeneID:1482617 Length = 601 Score = 37.4 bits (85), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 12/132 (9%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 +AA RG AKST ++ I+V+WC+ +++ + ++A + I + LA Sbjct: 55 VAAQRGEAKST-IACIYVVWCITQNPATRAMLVSGSGDKAEENGQLITKLIMHWDLLAYL 113 Query: 149 FPQGAGKGRVWQVGTIVT------ANDAKVQVFGSGKRMRGLRHGPHRPDLVIGDDLEND 202 P+ R V A + G ++G +R D++I DD+E Sbjct: 114 RPEARMGDRTSATSFDVNWALKGVEKSASINCIGITAALQG-----YRADILIPDDIETT 168 Query: 203 ENVRSPEQRDKL 214 +N + +R KL Sbjct: 169 KNGLTATERAKL 180 >gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfWMP4_40 # Family: family:all:543 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762670;genbank:gi:115304378;genbank:GeneI D:5142298 Length = 581 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 19/147 (12%) Query: 376 SSR-DPSAILVGG--FNRETGVLD--VVEAAIRKRLPDKIIEDVI--AMQRAYHCLVWGV 428 SSR D +AI VGG F R+ LD V ++ L D+I V+ ++R Y V Sbjct: 407 SSRADYTAIAVGGKTFQRKLCALDFSVGHYSVEHTL-DEIARLVVLWNVKRMY------V 459 Query: 429 EAVQFQEFLRTELVKRSAKAGCPVPARAITPHADKLLRIES-LQPHMANGLIRLHP---S 484 E + FQ R ++K A+ P +K RIES L + G + + + Sbjct: 460 ETIAFQSLYRDRIIKHLAEKKIQCAVLDYKPVGNKHKRIESHLSSYFNQGNVVFNSRLKN 519 Query: 485 QTVLEQQLRHFP-AADHDDGPDALHML 510 Q ++ F A+ DD PDAL ++ Sbjct: 520 QAIVMNTFNFFGRASAKDDPPDALAVV 546 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%) Query: 83 DGQHEA--IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELE 140 DG H+ + A RG KS ++ FV+W + + LI+ + E+A IK ++ Sbjct: 48 DGDHKKFILQAFRGIGKS-FITCAFVVWVLWRDPQLKVLIVSASKERADANSIFIKNIID 106 Query: 141 FNPRLAMDFPQGAGKGRV--WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVIGDD 198 P LA P+ + V + VG + V+ G ++ G R D++I DD Sbjct: 107 LLPFLAELKPRPGQRDSVISFDVGLAKPDHSPSVKSVGITGQLTG-----SRADIIIADD 161 Query: 199 LENDENVRSPEQRDKL 214 +E N + R+KL Sbjct: 162 VEVPGNSSTSSAREKL 177 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 17/161 (10%) Query: 83 DGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFN 142 D + + A RG KS ++ FV+W + +I+ + E+A IK ++ Sbjct: 40 DNRRFILQAFRGIGKS-FITCAFVVWKLWNNPDLKFMIVSASKERADANSIFIKRIIDLM 98 Query: 143 PRLAMDFPQGAGKGRV--WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVIGDDLE 200 P+L P+ + V + VG + V+ G ++ G R D++I DD+E Sbjct: 99 PQLKELKPKQGQRDAVISFDVGPAKPDHSPSVKSVGITGQLTG-----SRADILIADDVE 153 Query: 201 NDENVRSPEQRDKLENWLKK---------TVLSLGSADDTM 232 N + RD+L +K+ T++ LG+ + M Sbjct: 154 VPNNSATQAARDRLSELVKEFDAILKPGGTIIYLGTPQNEM 194 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 80/189 (42%), Gaps = 17/189 (8%) Query: 83 DGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFN 142 D + + A RG KS ++ FV+W + + LI+ + E+A IK ++ Sbjct: 51 DNKKFILQAFRGIGKS-FITCAFVVWTLWRDPQLKILIVSASKERADANSIFIKNIIDLL 109 Query: 143 PRLAMDFPQGAGKGRV--WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVIGDDLE 200 P LA P+ + V + VG + V+ G ++ G R D++I DD+E Sbjct: 110 PFLAELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTG-----SRADIIIADDVE 164 Query: 201 NDENVRSPEQRDKLENW-LKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRR 259 N + R+KL W L + +L T VI +GT ++ L N R Sbjct: 165 IPSNSATQGAREKL--WTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDN-----R 217 Query: 260 KFKAIIEWP 268 + II WP Sbjct: 218 GYTTII-WP 225 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 17/197 (8%) Query: 75 LPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEA 134 + +++ + D + + A RG KS ++ FV+W + + LI+ + E+A Sbjct: 42 MAKVLANGDNKKFILQAFRGIGKS-FITCAFVVWTLWRDPQLKILIVSASKERADANSIF 100 Query: 135 IKAELEFNPRLAMDFPQGAGKGRV--WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPD 192 IK ++ P LA P+ + V + VG + V+ G ++ G R D Sbjct: 101 IKNIIDLLPFLAELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTG-----SRAD 155 Query: 193 LVIGDDLENDENVRSPEQRDKLENW-LKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLL 251 ++I DD+E N + R+KL W L + +L T VI +GT ++ L Sbjct: 156 IIIADDVEIPSNSATQGAREKL--WTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKELE 213 Query: 252 KNPLWKRRKFKAIIEWP 268 N R + II WP Sbjct: 214 DN-----RGYTTII-WP 224 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 193 LVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLLK 252 L+I D ++N E S RDK+ + T + VI+I T H D ++ RLLK Sbjct: 164 LIIDDPIKNREEAESKTIRDKIYQEWESTFFT--RLHKGHSVIVIMTRWHEDDLIGRLLK 221 Query: 253 -NPL-WKRRKFKAIIE 266 N L W+R + AI E Sbjct: 222 ANTLPWERIRLPAIAE 237 Score = 23.9 bits (50), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 456 AITPHADKLLRIESLQPHMANGLIRL-HP-----SQTVLEQQLRHFPAADHDDGPDAL 507 + P K R ++ P +G + HP V+E+ L FP +HDD DA+ Sbjct: 408 GVEPEGGKETRAYAVTPLFESGNVYFPHPLYAPWISDVIEEMLA-FPNGEHDDDVDAM 464 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 76/204 (37%), Gaps = 37/204 (18%) Query: 34 PKASAARRERASADYEYFARTYFPHYV-----KRGNALLHDY-LYKRLPELVDHPDGQHE 87 P+ + RERA D +FA+ P YV + A + DY L+ R +L ++ Sbjct: 18 PEKAKEVRERALEDLYFFAKLVNPGYVYGEVHREIFAWMQDYTLFGRGSDLT-----SNK 72 Query: 88 AIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEA-------IKAELE 140 I PR + KS +V+ WC +H P + + AT+ E I A Sbjct: 73 LIMLPRAHLKSHMVA----TWCAWIITRH-PEVTILYISATATLAETQLYAVKNILASSV 127 Query: 141 FNPRLAMDFPQGAGKGRVWQVGTIVTAN---------DAKVQVFGSGKRMRGLRHGPHRP 191 +N GK W + + DA + G G Sbjct: 128 YNRYFPEYIHPQEGKREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGW-----HA 182 Query: 192 DLVIGDDLENDENVRSPEQRDKLE 215 D+++ DDL EN + + R+ ++ Sbjct: 183 DIIVADDLVVPENAYTEDGRESVQ 206 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 33.5 bits (75), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 30/180 (16%) Query: 84 GQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNP 143 ++ + A RG AK+T ++ I+ ++ ++ H P + Q A E I A Sbjct: 65 NKYRMVEAQRGQAKTT-IAAIYAVFRII----HEPHKRIMIVSQTAKRAEEI-AGWVIKI 118 Query: 144 RLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGKRMRGLRHGPH-------------R 190 +DF + + + I + A ++ F +RG P R Sbjct: 119 FRGLDFLE-------FMLPDIYAGDKASIKGFEIHYTLRGSDKSPSVACYSIEAGMQGAR 171 Query: 191 PDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 D+++ DD+E+ +N R+ R LE+ K+ S + D+I +GT +S+ + L Sbjct: 172 ADIILADDVESLQNSRTAAGRALLEDLTKE----FESINQFGDIIYLGTPQSVNSIYNNL 227 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 33.1 bits (74), Expect = 0.009, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 32/200 (16%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 + A RG KS ++ FV+W + + +I+ + E+A IK ++ P L Sbjct: 56 LQAFRGIGKS-FITCAFVVWKLWNNPQLKFMIVSASKERADANSIFIKRIIDLLPFLHEL 114 Query: 149 FPQGAGKGRV--WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVIGDDLENDENVR 206 P+ + V + VG + V+ G ++ G R D++I DD+E N Sbjct: 115 KPRPEQRDSVISFDVGLAKPDHSPSVKSVGITGQLTG-----SRADILIADDVEVPNNSA 169 Query: 207 SPEQRDKLENWLKK---------TVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWK 257 + RD+L +K+ T++ LG+ M + Y + +R K +W Sbjct: 170 TQAARDRLGELVKEFDAILKPNGTIIYLGTPQCEMTL--------YRELENRGYKTTIWP 221 Query: 258 RRKFKAIIEWPHRMDLWETW 277 R +P M+ ET+ Sbjct: 222 AR-------YPKDMNDLETY 234 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 32.7 bits (73), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 8/142 (5%) Query: 75 LPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEA 134 + +++ + D + + A RG KS ++ FV+W + + LI+ + E+A Sbjct: 42 MAKVLANGDNKKFILQAFRGIGKS-FITCAFVVWSLWRDPQLKILIVSASKERADANSIF 100 Query: 135 IKAELEFNPRLAMDFPQGAGKGRV--WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPD 192 IK ++ P LA P+ + V + VG + V+ G ++ G R D Sbjct: 101 IKNIIDLLPFLAELKPRPGQRDSVISFDVGPAKPDHSPSVKSVGITGQLTG-----SRAD 155 Query: 193 LVIGDDLENDENVRSPEQRDKL 214 ++I DD+E N + R+KL Sbjct: 156 IIIADDVEIPSNSATMGAREKL 177 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 32.3 bits (72), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 39/91 (42%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 I R NAKS ++ I T KH I + EQ+ + +AI +L P L Sbjct: 97 IQLARKNAKSQFLALIASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILKGK 156 Query: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGK 179 + G+ + ++ +I+ + + G GK Sbjct: 157 YTSANGRVKKYKTNSIIQPLSREARKLGDGK 187 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 31.6 bits (70), Expect = 0.025, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 8/142 (5%) Query: 75 LPELVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEA 134 + +++ + D + + A RG KS ++ FV+W + + LI+ + E+A Sbjct: 42 MAKVLANGDNKKFILQAFRGIGKS-FITCAFVVWSLWRDPQLKILIVSASKERADANSIF 100 Query: 135 IKAELEFNPRLAMDFPQGAGKGRV--WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPD 192 IK ++ P L+ P+ + V + VG + V+ G ++ G R D Sbjct: 101 IKNIIDLLPFLSELKPRPGQRDSVISFDVGPANPDHSPSVKSVGITGQLTG-----SRAD 155 Query: 193 LVIGDDLENDENVRSPEQRDKL 214 ++I DD+E N + R+KL Sbjct: 156 IIIADDVEIPSNSATMGAREKL 177 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 28.5 bits (62), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/91 (24%), Positives = 40/91 (43%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 I R NAKS L++ I C L+ + I EQ++ + + A+++ L Sbjct: 108 IQLARKNAKSQLLALIASYECFLSPEQSEVYIAGWGREQSSIVYNEVLAQVQACDLLKGK 167 Query: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGK 179 + G+ R + G+I+ + + G GK Sbjct: 168 YTDSYGRIRHKKSGSIIQPLSKEARKTGDGK 198 >gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp68 # Family: family:all:543 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950546;genbank:gi:119952237;genbank:GeneI D:5075700 Length = 530 Score = 28.5 bits (62), Expect = 0.23, Method: Compositional matrix adjust. Identities = 109/513 (21%), Positives = 195/513 (38%), Gaps = 96/513 (18%) Query: 77 ELVDHPDGQHEAIA--APRGNAKSTLVSQIFVIWCVLTGRKHYP--------LIIMDAFE 126 +++D +++ IA RG AK+TL + F ++ + G H P + + D+ + Sbjct: 58 KMLDKITSKNQYIANLCFRGAAKTTLFMEYFTLFLAVFG--HLPSLGKVEGMIYVSDSMD 115 Query: 127 QAATMLEAIKAELEF----NPRLAMDFPQGAGKGRVWQVGTIVTANDAK--VQVFGSGKR 180 +++ + +EF +P L P+ + V A + V++FG+ Sbjct: 116 NG---VKSARKNIEFRYNNSPFLQQWIPKATFTDNYLE---FVNAEGHRLGVKMFGAKTG 169 Query: 181 MRGLRHGPHRPDLVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDT-MDVIIIGT 239 +RG + RP L + DDL +D++ RS + +++ + K V + D T VI GT Sbjct: 170 LRGTKIFGKRPVLCVLDDLVSDDDARSRTSMEAIKDTVYKGVNH--ALDPTRRKVIFNGT 227 Query: 240 ILHYDSVLSRLLKNPLWKRRKFKAIIEWP-HRMDLWETWEELLLNS--DDEGAAAL---- 292 + + +L +++ W + ++P R + WE+ +D+ AL Sbjct: 228 PFNKEDILIEAVESGAWDVNVWPVCEKFPCTREEFQGAWEDRFSYDYINDQYQMALKTGK 287 Query: 293 --AFYQE---RVAAMEDGAIICWPDGQPLYKLMVKRARDGHSAFDSEQQNDPVQGENAPF 347 +FYQE R+++ ED +I + + + + R R ++ Sbjct: 288 LASFYQELMLRISS-EDERLIQDSEIKWYSRTQLLRLRSCYN------------------ 328 Query: 348 AACITFWVNRLAQWMFYGACDPSLGKQGSSRDPSAILVGGFNRETGVLDVVEAAIRKRLP 407 FY D + ++ S D S I V + V A R+ + Sbjct: 329 ---------------FYITTDFATSEKQVS-DYSVISVWAYGSNGDWFWVDGIACRQTM- 371 Query: 408 DKIIEDVIAMQRAYHCLVWGVEAV----QFQEFLRTELVKR-------SAKAGCPVPARA 456 DK +D+ + + Y GVE F L+ E++ R S++ G P Sbjct: 372 DKNFDDLFRLVQEYQPQQVGVETTGQQGGFISLLQKEMLNRNVFFNFASSRGGQP----G 427 Query: 457 ITPHADKLLRIESLQPHMANGLIRL------HPSQTVLEQQLRHFPAADHDDGPDALHML 510 I P KL R + P G + P T+ Q+R D + + Sbjct: 428 IHPVTSKLSRFNLVVPWFKAGKMYFPAEMKDSPIMTLFMGQIRLATINGLKGKDDCIDTI 487 Query: 511 WMLATTGFAPIEATLVKRRHEYAPGLDDSFDTG 543 ML +A +V P DD DTG Sbjct: 488 SMLGYLNPWKPQAGMVPVNTSGDPLWDDGDDTG 520 >gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:144 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552286;genbank:gi:160700611;genbank:Ge neID:5758815 Length = 556 Score = 28.1 bits (61), Expect = 0.26, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 49 EYFARTYFPHYVKRGNALLHDYLYK---RLPELVDHPDGQHEAIAAPRGNAKSTLVSQIF 105 E F R +F + +G L ++ ++ +L E V H + I G+ K+ + S + Sbjct: 27 EMFTRIFFQ--LLQGQKFLANWHHRFCMKLAEAVYHGKVRRGIINVAPGSTKTEIWSIHW 84 Query: 106 VIWCVLTGRKHY 117 + WC+L Y Sbjct: 85 ICWCILKSISKY 96 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 28.1 bits (61), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 23/188 (12%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQA---ATMLEAIKAELEFNPRL 145 I+A RG KS ++ FV+W + ++I + E+A + + + ++E+ L Sbjct: 50 ISAFRGVGKS-WITAAFVLWVLFVDPDRKIMVISASKERADNFSIFCQKLILDIEWLSHL 108 Query: 146 AMDFPQGAGK--GRV-WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVIGDDLEND 202 P+ + + R+ + VG V+ G +M G R L++ DD+E Sbjct: 109 R---PRDSDQRWSRISFDVGPAKPHQAPSVKSVGITGQMTG-----SRAHLMVFDDVEVP 160 Query: 203 ENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFK 262 N + QR+KL + ++ S+ DD ++ +GT ++ +L + R ++ Sbjct: 161 ANSATDMQREKLLQLVSESE-SILVPDDDARIMFLGTPQSTFTIYRKLAE------RSYR 213 Query: 263 AIIEWPHR 270 + WP R Sbjct: 214 PFV-WPAR 220 >gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398965;genbank:gi:81343949;genbank:GeneID :3778868 Length = 523 Score = 27.3 bits (59), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 452 VPARAITPHADKLLRIESLQPHMANGLIRL---HPSQTVLEQQLRHFPAAD---HDDGPD 505 P P DKL R+ S P + G + L P + L ++ F A D HDD D Sbjct: 437 TPIEPYVPDNDKLTRVMSALPQIKAGNVVLPESAPWLSGLLTEIAAFTADDSHKHDDQID 496 Query: 506 ALHM 509 L M Sbjct: 497 CLTM 500 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 26.9 bits (58), Expect = 0.59, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 18/185 (9%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 I A RG KS ++ FV+W + + +II + E+A M ++ + P L Sbjct: 48 IQAFRGVGKS-WITGAFVLWTLFNDAEKKIMIISASKERADNMSIFLQKLIIETPWLKHL 106 Query: 149 FPQG--AGKGRVWQVGTIVTANDA-KVQVFGSGKRMRGLRHGPHRPDLVIGDDLENDENV 205 P+ A R+ + + + A V+ G ++ G R DL+I DD+E N Sbjct: 107 RPKSDDARWSRI-SFDVLCSPHQAPSVKSVGITGQLTG-----SRADLMILDDIEVPGNS 160 Query: 206 RSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAII 265 + R+KL + L DD+ ++ +GT +V +L + R ++ + Sbjct: 161 MTELMREKLLQLCTEAESILTPKDDSR-IMYLGTPQTTFTVYRKLAE------RAYRPFV 213 Query: 266 EWPHR 270 WP R Sbjct: 214 -WPAR 217 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/92 (20%), Positives = 38/92 (41%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 I R NAKS ++ + L K I +Q++ + EA+K + + L Sbjct: 107 IQLARKNAKSQFLAIVAAFCTFLGDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGK 166 Query: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR 180 + + +++ G++V + + G GK Sbjct: 167 WKEAYSTIEIFKNGSVVVPLSKEARKTGDGKN 198 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/92 (20%), Positives = 38/92 (41%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 I R NAKS ++ + L K I +Q++ + EA+K + + L Sbjct: 107 IQLARKNAKSQFLAIVAAFCTFLGDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGK 166 Query: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR 180 + + +++ G++V + + G GK Sbjct: 167 WKEAYSTIEIFKNGSVVVPLSKEARKTGDGKN 198 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/92 (20%), Positives = 38/92 (41%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 I R NAKS ++ + L K I +Q++ + EA+K + + L Sbjct: 107 IQLARKNAKSQFLAIVAAFCTFLGDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGK 166 Query: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR 180 + + +++ G++V + + G GK Sbjct: 167 WKEAYSTIEIFKNGSVVVPLSKEARKTGDGKN 198 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/92 (20%), Positives = 38/92 (41%) Query: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 I R NAKS ++ + L K I +Q++ + EA+K + + L Sbjct: 107 IQLARKNAKSQFLAIVAAFCTFLGDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGK 166 Query: 149 FPQGAGKGRVWQVGTIVTANDAKVQVFGSGKR 180 + + +++ G++V + + G GK Sbjct: 167 WKEAYSTIEIFKNGSVVVPLSKEARKTGDGKN 198 >gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285519;genbank:gi:148734502;genbank:Ge neID:5220006 Length = 523 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 87/491 (17%), Positives = 184/491 (37%), Gaps = 44/491 (8%) Query: 39 ARRERASADYEYFARTYFPHYVKRGNALL----HDYLYKRLPELVDHPDGQHEAIAAPRG 94 A +E ++ D++ F + +FP +++G + H Y+ + + E+++ P G Sbjct: 14 AIKELSTHDFDTFVKIWFP--IQQGEKWIPNWHHLYIARAIDEIIEGVRKDTIFNVTP-G 70 Query: 95 NAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD-FPQGA 153 + K+ L+S F + L K L I +F + + N R + +P Sbjct: 71 SGKTELLSIHFPPYSYLKLNKVRNLNI--SFADTLVKRNSKRVRDLVNSREWQELYPAKT 128 Query: 154 GKGRVWQVGTIVTANDAKVQVFGS--GKRMRGLRHGPHRPDLVIG----DDLENDENVRS 207 G + + + A ++++ G ++ G R G P + G DD E +++ S Sbjct: 129 GTSKDDEFQILNDAGKVRLEMISKSMGGQITGSRGGYITPGVYSGCVTLDDPEKPDDMFS 188 Query: 208 PEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPL---WKRRKFKAI 264 +R++ + K T+ S + +T +I+I LH + L+ + + + A+ Sbjct: 189 KVKRERGQMIAKNTIRSRRAHSET-PIIVIQQRLHAQDMTWFLMNGGMGIEFDQISIPAM 247 Query: 265 I--EWPHRMDLW--ETWEELLLNSDDEGAAALAFYQERVAAMEDGAIICWPDGQPLYKLM 320 + E+ + W +E+ +L+S+ + +Y WP + ++ L Sbjct: 248 VTEEYGKSLPDWLQPHFEKDVLSSEYIVIDGVKYYS------------FWPSKESIHDLK 295 Query: 321 VKRARDGHSAFDSEQQNDPVQGENAPFAACITFWVNRLAQWM-------FYGACDPSLGK 373 R D ++ QQ G NA ++ M + + K Sbjct: 296 ALRDADLYTFLSQYQQEPIALGGNAINVGWFQYYGTGEKSTMPKPDRFDYTFITADTAQK 355 Query: 374 QGSSRDPSAILV-GGFNRETGVLDVVEAAIRKRLPDKIIEDVIAMQRAYHCLVWGVEAVQ 432 +G D S + G F +D V + + + + + + + Sbjct: 356 EGELNDYSVLCYWGMFKGRIYFIDGVRGKWEAPMLETQFKAFVKQCWNRNKECGNLRKIY 415 Query: 433 FQEFLRTELVKRSAKAGCPVPARAITPHADKLLRIESLQPHMANGLIRLHPSQTVLEQQL 492 ++ + ++ + P+ + DK+ R QP + NG + L S +L + L Sbjct: 416 VEDKASGTGLIQNCRKAFPIEITPVQRDKDKVTRCMDAQPVIKNGYVVLPESHHMLAEFL 475 Query: 493 RHFPAADHDDG 503 A +DD Sbjct: 476 AEAAAFTYDDS 486 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 15/148 (10%) Query: 35 KASAARRERASADYEYFARTYFP-HYVKRG--NALLHDYLYKRLPELVDHPDGQHEAIAA 91 K A R+R D YFA Y ++ G L DY L + + + A Sbjct: 95 KEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQLRDYQKDMLRIMAGN---RLMAANL 151 Query: 92 PRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMDFPQ 151 R K+T+V+ + K+ ++ A +A +L K LE P DF Q Sbjct: 152 SRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKA-SMSAEVLHRTKQALELLP----DFLQ 206 Query: 152 GAGKGRV-WQVGTIVTANDAKVQVFGSG 178 G V W G+I N + F S Sbjct: 207 ---PGIVEWNKGSITLGNGCAIGAFSSS 231 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 15/148 (10%) Query: 35 KASAARRERASADYEYFARTYFP-HYVKRG--NALLHDYLYKRLPELVDHPDGQHEAIAA 91 K A R+R D YFA Y ++ G L DY L + + + A Sbjct: 95 KEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQLRDYQKDMLRIMAGN---RLMAANL 151 Query: 92 PRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMDFPQ 151 R K+T+V+ + K+ ++ A +A +L K LE P DF Q Sbjct: 152 SRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKA-SMSAEVLHRTKQALELLP----DFLQ 206 Query: 152 GAGKGRV-WQVGTIVTANDAKVQVFGSG 178 G V W G+I N + F S Sbjct: 207 ---PGIVEWNKGSITLGNGCAIGAFSSS 231 >gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp4 # Family: family:all:144 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654901;genbank:gi:109392357;genbank:GeneI D:4157077 Length = 583 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 193 LVIGDDLENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLL 251 L+I D +N S R +E W L+ + D + +I+I T H + + ++L Sbjct: 219 LIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDAS--IILIQTRWHPEDLAGKVL 275 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 15/148 (10%) Query: 35 KASAARRERASADYEYFARTYFP-HYVKRG--NALLHDYLYKRLPELVDHPDGQHEAIAA 91 K A R+R D YFA Y ++ G L DY L + + + A Sbjct: 94 KEMLAERKRCKEDIVYFAENYCCIEHIDYGIIRVQLRDYQKDMLRIMAGN---RLMAANL 150 Query: 92 PRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMDFPQ 151 R K+T+V+ + K+ ++ A +A +L K LE P DF Q Sbjct: 151 SRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKA-SMSAEVLHRTKQALELLP----DFLQ 205 Query: 152 GAGKGRV-WQVGTIVTANDAKVQVFGSG 178 G V W G+I N + F S Sbjct: 206 ---PGIVEWNKGSITLGNGCAIGAFSSS 230 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.321 0.137 0.426 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 262,977 Number of Sequences: 514 Number of extensions: 12169 Number of successful extensions: 81 Number of sequences better than 100.0: 40 Number of HSP's better than 100.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 45 length of query: 550 length of database: 206,069 effective HSP length: 76 effective length of query: 474 effective length of database: 167,005 effective search space: 79160370 effective search space used: 79160370 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)