BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_018085.1_cdsid_YP_006488672.1 [gene=BTCS33_gp02] [protein=phage terminase large subunit] [protein_id=YP_006488672.1] [location=567..2261] (564 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 677 0.0 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 509 e-146 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 508 e-146 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 508 e-146 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 508 e-145 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 407 e-115 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 398 e-113 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 346 3e-97 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 295 1e-81 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 286 4e-79 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 285 1e-78 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 273 3e-75 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 270 4e-74 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 268 1e-73 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 266 4e-73 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 259 4e-71 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 259 5e-71 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 257 2e-70 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 246 6e-67 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 246 7e-67 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 245 1e-66 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 245 1e-66 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 244 2e-66 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 236 5e-64 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 236 5e-64 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 236 5e-64 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 236 7e-64 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 236 7e-64 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 233 5e-63 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 203 4e-54 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 194 2e-51 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 181 1e-47 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 169 7e-44 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 169 9e-44 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 169 1e-43 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 167 3e-43 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 165 2e-42 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 164 3e-42 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 164 4e-42 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 157 3e-40 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 153 4e-39 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 145 1e-36 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 134 4e-33 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 133 5e-33 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 130 5e-32 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 119 7e-29 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 119 9e-29 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 114 4e-27 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 108 2e-25 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 107 3e-25 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 102 9e-24 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 102 1e-23 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 102 1e-23 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 100 5e-23 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 97 4e-22 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 95 2e-21 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 95 2e-21 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 94 4e-21 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 88 2e-19 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 86 9e-19 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 64 4e-12 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 64 5e-12 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 64 6e-12 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 62 2e-11 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 60 7e-11 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 53 1e-08 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 45 2e-06 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 40 5e-05 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 40 8e-05 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 40 1e-04 gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp1... 39 1e-04 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 39 2e-04 gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp1... 34 0.004 gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp... 34 0.005 gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: put... 26 1.5 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/552 (59%), Positives = 408/552 (73%), Gaps = 8/552 (1%) Query: 6 MMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHT 65 ++ Y DV+ G +ACQKHK AC+RFL DIER +DFPY F E+ RF +W +FKH Sbjct: 9 IVHYAQDVVDGRTIACQKHKWACERFLNDIERITEDDFPYYFDGEELYRFYRWARMFKHN 68 Query: 66 KGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEA 125 KG LAGQ IE Q+F+ NI+GW + GLRRF+KAY Q+ RKNAKSQ LA + SYE Sbjct: 69 KGILAGQPIELTDFQLFIVGNIFGWKRKENGLRRFRKAYIQLARKNAKSQLLALIASYEC 128 Query: 126 MAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISAL 185 E SEVY+ EQS IV+NE+ AQ+ C+ LK K+ +YG+I H K+ S I L Sbjct: 129 FLSPEQ-SEVYIAGWGREQSSIVYNEVLAQVQACDLLKGKYTDSYGRIRHKKSGSIIQPL 187 Query: 186 SKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCY 245 SK+A K+GDG N +IDEYH H TSEIYDVLVSG AR NPL++IITTAGFNL+ PCY Sbjct: 188 SKEARKTGDGKNPSLAVIDEYHTHETSEIYDVLVSGMVARQNPLIVIITTAGFNLASPCY 247 Query: 246 RVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLKG 305 EYQYVSK++DP IENEEYFVM+ ELDKDD+I + W KANPI+ +YEEG +FL+ Sbjct: 248 -TEYQYVSKVIDPGSPIENEEYFVMICELDKDDDIKDERNWVKANPIVATYEEGMNFLRS 306 Query: 306 ELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNC--KETVELSELKGLECTVGV 363 ELQ+ALDVPEKMR+FLTKNMN WVD K+NGY+ + KW+ C KE ++L +C VG+ Sbjct: 307 ELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRACAIKEQIDLDVR---DCYVGI 363 Query: 364 DLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPG 422 DLS +IDLTS+S DD ++ V SHSF+PEDTLAEKR+TDKVPYDLWV+Q WIT TPG Sbjct: 364 DLSMRIDLTSVSGIVPMDDGRFYVWSHSFIPEDTLAEKRRTDKVPYDLWVKQGWITVTPG 423 Query: 423 AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGP 482 AVVDY+FI+ +I+ + +D + IKEIC DP+NAT F +MEAEGY M+EIRQG TLS P Sbjct: 424 AVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNATHFAHEMEAEGYVMVEIRQGFRTLSEP 483 Query: 483 TKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVINSHV 542 TK FRE V K++H++NPVLNWA NA+ KQD NENIMLDK K+T RIDPIAA+IN+ V Sbjct: 484 TKRFRELVLSGKILHDDNPVLNWAIGNAVVKQDHNENIMLDKDKSTGRIDPIAALINAMV 543 Query: 543 RCMLNSGEVDLN 554 R +L S EVD+N Sbjct: 544 RAILKSDEVDIN 555 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 509 bits (1310), Expect = e-146, Method: Compositional matrix adjust. Identities = 264/549 (48%), Positives = 358/549 (65%), Gaps = 11/549 (2%) Query: 5 WMMD----YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMS 60 W+M+ YC+D+L+G++ +C+KH+ A +RF+RD E SED P+ F E A F + Sbjct: 3 WIMERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAK 62 Query: 61 LFKHTKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACV 120 FKH +G LAG+ +E Q+F+ +NI+G+ + G RRF+K + Q+ RKNAKSQ LA V Sbjct: 63 EFKHVEGILAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIV 122 Query: 121 GSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDS 180 ++ G+ Y+ +QS V+ +K ++ E L+ K+ AY IE K S Sbjct: 123 AAF-CTFLGDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIFKNGS 181 Query: 181 FISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNL 240 + LSK+A K+GDG N GI+DEYHAH T EIYDVL SG AR PLM IITTAGF+L Sbjct: 182 VVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDL 241 Query: 241 SHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQ 300 S PCYR EY+YVS ILDP+ ++EN++YFVM+ EL+K+D+I + W KANPI+ +YEEG Sbjct: 242 SRPCYR-EYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGL 300 Query: 301 SFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECT 360 ++ +L+ ALD PEKMR FLTKNMN WVD K+NGYMDM KW+ C+ V+ + G Sbjct: 301 EGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCE--VDTXDFSGATLW 358 Query: 361 VGVDLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITT 419 +G DLS DLTS+ + D+ +IV HSFMPE L EK DKV YDLW +Q ++T Sbjct: 359 IGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTL 418 Query: 420 TPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATL 479 TPG +VDY +++ I N KD +I+E D WNA Q++E +G+ +EI Q +A L Sbjct: 419 TPGEMVDYTIVESWIENFSKDK--EIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANL 476 Query: 480 SGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVIN 539 S PTK+FRE+VY KKV HN +PVL WA +NA+ K D ENIM+ K + RIDP AAV+N Sbjct: 477 SIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAVLN 536 Query: 540 SHVRCMLNS 548 + R M + Sbjct: 537 AFXRAMYGA 545 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 508 bits (1309), Expect = e-146, Method: Compositional matrix adjust. Identities = 264/549 (48%), Positives = 358/549 (65%), Gaps = 11/549 (2%) Query: 5 WMMD----YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMS 60 W+M+ YC+D+L+G++ +C+KH+ A +RF+RD E SED P+ F E A F + Sbjct: 3 WIMERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAK 62 Query: 61 LFKHTKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACV 120 FKH +G LAG+ +E Q+F+ +NI+G+ + G RRF+K + Q+ RKNAKSQ LA V Sbjct: 63 EFKHVEGILAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIV 122 Query: 121 GSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDS 180 ++ G+ Y+ +QS V+ +K ++ E L+ K+ AY IE K S Sbjct: 123 AAF-CTFLGDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIFKNGS 181 Query: 181 FISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNL 240 + LSK+A K+GDG N GI+DEYHAH T EIYDVL SG AR PLM IITTAGF+L Sbjct: 182 VVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDL 241 Query: 241 SHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQ 300 S PCYR EY+YVS ILDP+ ++EN++YFVM+ EL+K+D+I + W KANPI+ +YEEG Sbjct: 242 SRPCYR-EYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGL 300 Query: 301 SFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECT 360 ++ +L+ ALD PEKMR FLTKNMN WVD K+NGYMDM KW+ C+ V+ + G Sbjct: 301 EGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCE--VDTLDFSGATLW 358 Query: 361 VGVDLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITT 419 +G DLS DLTS+ + D+ +IV HSFMPE L EK DKV YDLW +Q ++T Sbjct: 359 IGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTL 418 Query: 420 TPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATL 479 TPG +VDY +++ I N KD +I+E D WNA Q++E +G+ +EI Q +A L Sbjct: 419 TPGEMVDYTIVESWIENFSKDK--EIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANL 476 Query: 480 SGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVIN 539 S PTK+FRE+VY KKV HN +PVL WA +NA+ K D ENIM+ K + RIDP AAV+N Sbjct: 477 SIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAVLN 536 Query: 540 SHVRCMLNS 548 + R M + Sbjct: 537 AFARAMYGA 545 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 508 bits (1309), Expect = e-146, Method: Compositional matrix adjust. Identities = 264/549 (48%), Positives = 358/549 (65%), Gaps = 11/549 (2%) Query: 5 WMMD----YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMS 60 W+M+ YC+D+L+G++ +C+KH+ A +RF+RD E SED P+ F E A F + Sbjct: 3 WIMERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAK 62 Query: 61 LFKHTKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACV 120 FKH +G LAG+ +E Q+F+ +NI+G+ + G RRF+K + Q+ RKNAKSQ LA V Sbjct: 63 EFKHVEGILAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIV 122 Query: 121 GSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDS 180 ++ G+ Y+ +QS V+ +K ++ E L+ K+ AY IE K S Sbjct: 123 AAF-CTFLGDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIFKNGS 181 Query: 181 FISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNL 240 + LSK+A K+GDG N GI+DEYHAH T EIYDVL SG AR PLM IITTAGF+L Sbjct: 182 VVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDL 241 Query: 241 SHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQ 300 S PCYR EY+YVS ILDP+ ++EN++YFVM+ EL+K+D+I + W KANPI+ +YEEG Sbjct: 242 SRPCYR-EYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGL 300 Query: 301 SFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECT 360 ++ +L+ ALD PEKMR FLTKNMN WVD K+NGYMDM KW+ C+ V+ + G Sbjct: 301 EGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCE--VDTFDFSGATLW 358 Query: 361 VGVDLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITT 419 +G DLS DLTS+ + D+ +IV HSFMPE L EK DKV YDLW +Q ++T Sbjct: 359 IGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTL 418 Query: 420 TPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATL 479 TPG +VDY +++ I N KD +I+E D WNA Q++E +G+ +EI Q +A L Sbjct: 419 TPGEMVDYTIVESWIENFSKDK--EIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANL 476 Query: 480 SGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVIN 539 S PTK+FRE+VY KKV HN +PVL WA +NA+ K D ENIM+ K + RIDP AAV+N Sbjct: 477 SIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAVLN 536 Query: 540 SHVRCMLNS 548 + R M + Sbjct: 537 AFARAMYGA 545 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 508 bits (1307), Expect = e-145, Method: Compositional matrix adjust. Identities = 264/549 (48%), Positives = 358/549 (65%), Gaps = 11/549 (2%) Query: 5 WMMD----YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMS 60 W+M+ YC+D+L+G++ +C+KH+ A +RF+RD E SED P+ F E A F + Sbjct: 3 WIMERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAK 62 Query: 61 LFKHTKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACV 120 FKH +G LAG+ +E Q+F+ +NI+G+ + G RRF+K + Q+ RKNAKSQ LA V Sbjct: 63 EFKHVEGILAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFLAIV 122 Query: 121 GSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDS 180 ++ G+ Y+ +QS V+ +K ++ E L+ K+ AY IE K S Sbjct: 123 AAF-CTFLGDEKQRAYIAGWTRDQSSEVYEAVKTGISSSELLEGKWKEAYSTIEIFKNGS 181 Query: 181 FISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNL 240 + LSK+A K+GDG N GI+DEYHAH T EIYDVL SG AR PLM IITTAGF+L Sbjct: 182 VVVPLSKEARKTGDGKNPSLGIVDEYHAHETDEIYDVLSSGMVARKEPLMFIITTAGFDL 241 Query: 241 SHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQ 300 S PCYR EY+YVS ILDP+ ++EN++YFVM+ EL+K+D+I + W KANPI+ +YEEG Sbjct: 242 SRPCYR-EYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIVATYEEGL 300 Query: 301 SFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECT 360 ++ +L+ ALD PEKMR FLTKNMN WVD K+NGYMDM KW+ C+ V+ + G Sbjct: 301 EGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCE--VDTFDFSGATLW 358 Query: 361 VGVDLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITT 419 +G DLS DLTS+ + D+ +IV HSFMPE L EK DKV YDLW +Q ++T Sbjct: 359 IGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTL 418 Query: 420 TPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATL 479 TPG +VDY +++ I N KD +I+E D WNA Q++E +G+ +EI Q +A L Sbjct: 419 TPGEMVDYTIVESWIENFSKDK--EIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANL 476 Query: 480 SGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVIN 539 S PTK+FRE+VY KKV HN +PVL WA +NA+ K D ENIM+ K + RIDP AAV+N Sbjct: 477 SIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQENIMISKKISKNRIDPAAAVLN 536 Query: 540 SHVRCMLNS 548 + R M + Sbjct: 537 AFSRAMYGA 545 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 407 bits (1047), Expect = e-115, Method: Compositional matrix adjust. Identities = 223/551 (40%), Positives = 329/551 (59%), Gaps = 15/551 (2%) Query: 6 MMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHT 65 ++DY + +L G++ AC++HKQACKRFL D+ER S+DF Y + EE+A R +KW +H+ Sbjct: 9 LIDYSNSILDGKINACKRHKQACKRFLNDLERMESDDFEYYWDEEEAQRIVKWYGHCRHS 68 Query: 66 KGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEA 125 KG L G+ I +S FV NI W H++T RRF+ A+ QV RKN KSQ A + YE Sbjct: 69 KGVLEGKPIILNSWAKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKSQLEAGMAGYEI 128 Query: 126 MAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISAL 185 A G N +EVY + +Q+KIV+ E ++ + LK++F I+H K++SFI L Sbjct: 129 GAKGYNAAEVYTLGVERDQAKIVFEEW--ELMASKPLKKRFKFTQKVIKHKKSNSFIKHL 186 Query: 186 SKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCY 245 SK AGK+GDG N Q +IDEYHAHP S++YDV+ SG AR PL++IITTAG + Sbjct: 187 SKKAGKTGDGKNPQMAVIDEYHAHPNSKMYDVMKSGMMARTEPLLVIITTAGEDYEETAC 246 Query: 246 RVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLKG 305 EY ILD ENE+YFVM+ EL+ +D+ + + W KANP+LC+YEEG ++ Sbjct: 247 YYEYLDCCSILDGT--FENEKYFVMICELEDEDDPFDEKAWIKANPVLCTYEEGIESMRQ 304 Query: 306 ELQSALDVP--EKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGV 363 A + EK FLTKN N +V E Y+D++ WK CKE + L + +G +C +G+ Sbjct: 305 NANLAKNTSNEEKRIEFLTKNCNIYVAAGEKKYVDVEFWKACKENITLEKFRGHDCYIGM 364 Query: 364 DLSAKIDLTSISFEFKKDD----KYIVLSHSFMPEDTLAEKRQTDKVPYDLWV--QQKWI 417 DLS DLTSI+FEF D KY + SF+P + + EK +TD VPY++W ++ W+ Sbjct: 365 DLSKSGDLTSIAFEFPYLDEGIRKYALFGKSFIPAEVVKEKMKTDNVPYNIWSSKEKGWL 424 Query: 418 TTT---PGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQ 474 T G +VD I I ++ K+++ + E+ DP A + ++E Y +E Q Sbjct: 425 IKTEANEGQIVDLWAILNTIESIVKEYELNVIEVSYDPHGAAMLVSELERRDYNCVECGQ 484 Query: 475 GMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPI 534 A L+ T +FR+ + +K+++H+ N ++ W NA ++ I + K +RIDP+ Sbjct: 485 SCAKLNEATVNFRDLMKIKQIVHDENNLMTWCVQNAEKDTNSFGEIKISKKSRFKRIDPL 544 Query: 535 AAVINSHVRCM 545 A+ I +H R M Sbjct: 545 ASCIFAHNRAM 555 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 398 bits (1022), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/396 (50%), Positives = 262/396 (66%), Gaps = 4/396 (1%) Query: 27 ACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGKLAGQRIEPHSIQIFVFSN 86 A +RF +D++R +D PY F E + F +W F H +G LAGQ IE Q+F+ +N Sbjct: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEGILAGQPIELTDFQLFIAAN 78 Query: 87 IYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQSK 146 IYG+ + G RRF+KAY Q+ RKNAKSQ LA + SYE E V++ EQS Sbjct: 79 IYGFYKKENGARRFRKAYIQLARKNAKSQFLALIASYEIFPTQEK-HRVFIAGWSREQSD 137 Query: 147 IVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEY 206 V+ I Q++ LK K+ A G+++ KT+S I LS++A K GDG N GI+DEY Sbjct: 138 EVYQAILEQLHHAPILKGKYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEY 197 Query: 207 HAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEE 266 HAH TSEIYDVL SG AR +PLM +ITTAGFN+ PC++ EYQY SKILDP+ID EN++ Sbjct: 198 HAHETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFK-EYQYTSKILDPDIDTENDD 256 Query: 267 YFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMN 326 YFVM+ ELD +D+I + W KANPI+ +Y EG L+ L+ AL+VPEKMR+FLTKNMN Sbjct: 257 YFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMN 316 Query: 327 RWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIV 386 RWVD K+NGYM M KW+ C + E+ +L+GL +G+DLS DLTS+ + +D + V Sbjct: 317 RWVDQKDNGYMKMTKWRAC--SGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYV 374 Query: 387 LSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPG 422 HSFMP+ EK TDKVPYDLW + +IT T G Sbjct: 375 GQHSFMPDARANEKMATDKVPYDLWREMGFITYTSG 410 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 346 bits (888), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 207/568 (36%), Positives = 330/568 (58%), Gaps = 25/568 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y DVL G+ VA + K AC+R + D+ER + Y F EKAL + + + T G+ Sbjct: 8 YAIDVLEGKEVAGRYVKLACQRHIDDLERSKLAPYKYEFDLEKALESIDFFEDLRFTDGE 67 Query: 69 LAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMAF 128 +AGQ+++ Q F+ +I+GWV + TG RRFKK+Y Q+ RKNAKS + +G A Sbjct: 68 IAGQQVKLFGFQDFIVGSIFGWVCKGTGYRRFKKSYVQLARKNAKSLLNSGIGIKLAAFD 127 Query: 129 GENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIA--YGKIEHLKTDSFISALS 186 ++VY ATK +Q++IVW + + + DL+E F I IE L I AL Sbjct: 128 KYPNAQVYCTATKMKQARIVWKQARKFIEIEPDLREIFKIKDHDAIIESLINGGEIMALG 187 Query: 187 KDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYR 246 +D G + DG + GIIDEYH+H T+++ +L GS + L+ IITTAGFNL+ PCY+ Sbjct: 188 RDTG-TIDGFDPHGGIIDEYHSHKTNQMVKLLEDGSVNQAESLISIITTAGFNLNGPCYK 246 Query: 247 VEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLKG- 305 E++Y +L+ ++ N+EYF+ + ++D +D+I +P W KANP++ +G LK Sbjct: 247 -EWEYCKNVLEGIVN--NDEYFIYIAQMDVEDDIWDPNNWLKANPLVAKLPKGLENLKRF 303 Query: 306 ELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGVDL 365 +S + ++NFLTK++N W + + Y+ WK + L KG C G+DL Sbjct: 304 AEESKQKGGDDLKNFLTKSLNIWYEFSNDQYIGPSVWKVGASKLTLENFKGKTCYAGLDL 363 Query: 366 SAKIDLTSIS----FEFKKDD-----KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKW 416 S+ DLTS++ +EF+K++ KY + SHSF+P+ +AE Q+D VPYD+W++ Sbjct: 364 SSGGDLTSLALIFPYEFEKENGEKVRKYFIHSHSFIPKRRVAEHIQSDDVPYDVWIENGL 423 Query: 417 ITTTP---GAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIR 473 +T T G DY++I ++R++ ++ + KI ++ DP NA F+QD+E G+ +EI Sbjct: 424 LTVTETLGGIKTDYKYIIKYLRDLIEEFQLKIIQLGYDPHNADTFLQDLEELGFDCVEIF 483 Query: 474 QGMATLSGPTKDFREQVYLKKVIHN-NNPVLNWATSNAITKQDANENIMLDKSKATERID 532 Q L+ PT+DF+ + + +N N +L+W+ NA ++N I +DK+ +RID Sbjct: 484 QSCKWLNDPTEDFKLECEAGNIEYNEENELLSWSVVNAKLVSNSNGEIKIDKNLQEKRID 543 Query: 533 PIAAVINSHVRCM----LNSGEVDLNSY 556 P+ AVI+++ LN+ +VD+N Y Sbjct: 544 PVDAVIDAYKLAFKSEKLNT-KVDINKY 570 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 295 bits (755), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 186/552 (33%), Positives = 289/552 (52%), Gaps = 24/552 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y D++ G++VAC+ + AC+R D+++ +++PY F + A R K++ L H+ G+ Sbjct: 13 YARDIVDGKIVACRFIRLACQRHFDDLKKSLDKNYPYKFDRDLAERACKFVQLLPHSSGE 72 Query: 69 LAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMAF 128 LAGQ+++ Q F+F +I+GWV + RRF++AY +V RKN KS A VG Y A Sbjct: 73 LAGQKLKLEPWQSFIFCSIFGWVTKKDKKRRFREAYIRVARKNGKSFFAAGVGIYTFCAD 132 Query: 129 GENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSKD 188 GEN +EVY GAT Q+K V+ + + L+ +F+I+ + D S + Sbjct: 133 GENSAEVYCGATTMAQAKKVFTPARQMASRLPALRSRFDISVWTDSLTRPDG--SVFAPM 190 Query: 189 AGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVE 248 AGK GDG + C IIDEYH H T +Y+ + G GAR PL +IITTAG +L PCY + Sbjct: 191 AGKPGDGDSPHCAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTAGSSLESPCYDKD 250 Query: 249 YQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLKGELQ 308 + I NE F M+ ELD D+ T+P+ KANP L + S L L+ Sbjct: 251 KEVKEAIEGITC---NERLFGMIYELDVGDDWTDPKNLIKANPNL-NVSVKYSDLVELLE 306 Query: 309 SALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKE-TVELSELKGLECTVGVDLSA 367 A VP K+ F TK +N WV K + + +M++WK ++ ++L + C VG+DL+ Sbjct: 307 VAKQVPRKVNAFKTKRLNIWVSGK-SAFYNMEQWKAAEDKNLKLEDFANDTCNVGLDLAK 365 Query: 368 KIDLTS----ISFEFKKDDKYIVLSHSF-MPEDTLAEK-----RQTDKVPYDLWVQQKWI 417 K+D+ + + E + Y + F +PEDT+ + D+ Y + + + Sbjct: 366 KLDMNAGIRLFTREIEGKRHYYCIKPKFWVPEDTIHTTDPKLLKTADR--YQKFYEMGAL 423 Query: 418 TTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMA 477 T GA DY I I +M+ ++ +I EI DP AT +E G+T+++IRQ Sbjct: 424 EATDGAEADYREILASILDMQGEN--RIDEIDIDPAGATALRHQLEDYGFTVVDIRQDYT 481 Query: 478 TLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITK--QDANENIMLDKSKATERIDPIA 535 +S K+ + + H+ NP+L W SN I K +++ + K +ID Sbjct: 482 NMSPAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIPGSDDLVRPTKGDNQSKIDGAT 541 Query: 536 AVINSHVRCMLN 547 A+ N+ R MLN Sbjct: 542 ALFNAMTRAMLN 553 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 286 bits (732), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 187/560 (33%), Positives = 283/560 (50%), Gaps = 30/560 (5%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIERE-GSEDFPYVFKEEKALRFLKWMSLFKHTKG 67 Y D+L G+++A + K AC+R L D++ +++PY F + A R ++ L H+ G Sbjct: 13 YARDILSGKILAGKYIKLACQRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQLLPHSSG 72 Query: 68 KLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMA 127 L GQ+++ Q+F+FS+I+GWV + RRFK+ Y +VGRKN KS A +G Y A Sbjct: 73 DLKGQKLKAEPWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKSFFAAGIGMYMFCA 132 Query: 128 FGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSK 187 GEN +EVY GATK Q+K V+ DL+ +FN++ + + D S + Sbjct: 133 DGENAAEVYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWAEKLTREDG--SVFAP 190 Query: 188 DAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRV 247 G GDG + C IIDEYH HPT +Y + +G GAR PL +IITTAG ++ PCY Sbjct: 191 VVGNPGDGDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQPLTLIITTAGKDIESPCYDK 250 Query: 248 EYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPIL---CSYEEGQSFLK 304 + + V + LD + NE F M+ ELD D +P KANP L YE+ L Sbjct: 251 DNE-VKQCLDKM--LPNERLFGMIYELDALDNWQDPCNLIKANPNLGVSVFYED----LV 303 Query: 305 GELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKE-TVELSELKGLECTVGV 363 +L A VP + TK++N WV K + +M W ++ ++LS KG E +G+ Sbjct: 304 EKLHLAKTVPRMTNDIKTKHLNMWVSGK-TAFFNMDHWAKAEDKNLKLSNFKGEESHLGL 362 Query: 364 DLSAKIDLTSISFEFKKDDK-----YIVLSHSFMPEDTLAE---KRQTDKVPYDLWVQQK 415 DL+AK+DL + F ++ + Y V S ++PEDT+ K Y WV + Sbjct: 363 DLAAKLDLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPKIAKTAKRYQKWVNMQ 422 Query: 416 W-----ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMI 470 W + T GA DY I + +M + +I I DP AT ++ G+ I Sbjct: 423 WAGGSLLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPTGATALSHELADNGFEPI 482 Query: 471 EIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITK--QDANENIMLDKSKAT 528 IRQ +S P K+ + + H+ NP+L W SN + +++ + K Sbjct: 483 NIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLGTFVPGSDDRVRPTKGDKQ 542 Query: 529 ERIDPIAAVINSHVRCMLNS 548 +ID A++ + R ML+ Sbjct: 543 SKIDGATALLMAIGRAMLHG 562 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 285 bits (729), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 174/549 (31%), Positives = 277/549 (50%), Gaps = 25/549 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y DV+ G +VAC+ AC+RFL D++R+ +D+PYVF E KA R +K+M L HTKGK Sbjct: 10 YASDVVGGAIVACRYVALACQRFLNDLDRQSDDDWPYVFDEAKADRAVKFMQLMPHTKGK 69 Query: 69 LAGQR----IEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 + + EP Q+F+ +NI+GWV R+TG RRF++AY ++ RKN KS LA G Y Sbjct: 70 WSASKSKLVFEPW--QVFIEANIFGWVKRDTGKRRFREAYEEIPRKNGKSARLAARGIYL 127 Query: 125 AMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFI-- 182 A GE+ +EVY GAT +Q+ V+ + E+L+ +F I + F+ Sbjct: 128 FAADGESGAEVYSGATTEKQAFEVFRPAWMMAHKLENLRNRFGIELSGNQKNPGPMFVME 187 Query: 183 --SALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNL 240 S G GDG + ++DEYH H T + D + +G GAR PL+ IITTAG NL Sbjct: 188 DMSKFETVIGNPGDGASPHAALVDEYHEHDTDALVDTMQTGMGAREQPLLSIITTAGSNL 247 Query: 241 SHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQ 300 PC+ + + ID E F ++ +D+DD +P KANP Sbjct: 248 GGPCHEKRRDVIRILEGQTID---ETIFGIIYTIDEDDPWDDPASLIKANPNY-GVSVFP 303 Query: 301 SFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECT 360 FL +LQ A K F TK++N+WV + +M+M W+ K ++++ G C Sbjct: 304 DFLLAQLQQAKRSASKQNAFRTKHLNQWVGAR-TVWMNMLAWQRQKRDFTIADMAGCRCW 362 Query: 361 VGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTT 420 + +DL++K D+ ++ F+K ++ + P E + Y + + + T Sbjct: 363 MALDLASKKDVAALVMLFEKAGQFYCI-----PRFYAPEAAAEENEKYQNFALEGHLVLT 417 Query: 421 PGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLS 480 PG++ DY FI+ I ++ K + +++ D W A + + +++ Q + +S Sbjct: 418 PGSMTDYAFIEADILDLAK--QIDLQDAAFDDWQANYLITRLSNTSIPVVDFNQTVKNMS 475 Query: 481 GPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATE---RIDPIAAV 537 P K+ +V + + H+ NPV+ W N K DA ENI K + +ID + Sbjct: 476 DPMKEVEARVIARTLWHDGNPVMTWMMGNVAAKIDAKENIYPRKENDNDPNCKIDGPVTL 535 Query: 538 INSHVRCML 546 I + R ++ Sbjct: 536 IMAMGRALV 544 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 273 bits (698), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 178/565 (31%), Positives = 286/565 (50%), Gaps = 23/565 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y DV+ G++ C+ AC+R L D+E +++P+ F ++KA R K++ L HTKG+ Sbjct: 9 YARDVVRGKIQVCRYVVLACQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQLLPHTKGE 68 Query: 69 LAGQRIEPHSI---QIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEA 125 A +R+ P ++ Q+F ++GWV + +GLRRF++AY ++ RKN KS A VG Y Sbjct: 69 WAFKRM-PITLEPWQLFCICVVFGWVRKKSGLRRFREAYNEIPRKNGKSAMSAGVGLYMF 127 Query: 126 MAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISAL 185 E +EVY GAT +Q+ V+ + E L+E F I + + + Sbjct: 128 ACDDEFGAEVYSGATTEKQAWEVFRPARLMAQRTEPLREAFGIEV-HAQSMSRPEDGARF 186 Query: 186 SKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCY 245 G GDG + C +IDEYH H T +Y + +G GAR PL+ ITTAG+N+ PCY Sbjct: 187 EPLIGDPGDGASPSCALIDEYHEHQTDALYQTMQTGMGARRQPLIFGITTAGYNIEGPCY 246 Query: 246 RVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLKG 305 + + + + N+E F ++ +D D+ T+P V KANP + +L Sbjct: 247 DKRREVIEML---EGIVPNDELFGIIYTIDDGDDWTDPAVLRKANPNM-GISVYSDYLLS 302 Query: 306 ELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKE-TVELSELKGLECTVGVD 364 + ++A++ P K+ F TK++N WV K+ + ++ W+ C++ ++ L +G C + D Sbjct: 303 QQRAAINNPRKVGVFKTKHLNIWVAAKD-AFFNLVNWQKCEDRSLTLERFEGHTCILAFD 361 Query: 365 LSAKIDLTSISFEFKK--DDK---YIVLSHSFMPEDTLAEKRQTDKVP---YDLWVQQKW 416 L+ K+DL ++ F + D K Y V F+P DT+ TD Y WV+ + Sbjct: 362 LARKLDLNAMVRLFTREIDGKTHYYCVAPKFFVPYDTIYSADVTDSRTAERYQKWVEGGF 421 Query: 417 ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGM 476 IT T GA +DY I + E + ++E DP AT + E I I Q Sbjct: 422 ITVTDGAEIDYREILESAK--EANRLNAVEESPIDPHGATNLSHHLADENLNPITIIQNY 479 Query: 477 ATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQ-DANENIMLDKSKATE-RIDPI 534 +S P K+ + + H+ NPV+ W SN I K +++++ + E +ID Sbjct: 480 TNMSDPMKELEAAIEAGRFHHDGNPVMTWCISNVIGKHIPGDDDVVRPIKQGNENKIDGA 539 Query: 535 AAVINSHVRCMLNSGEVDLNSYILS 559 A+I + RCML E L+ +I S Sbjct: 540 VALIMAIGRCMLFEKEDTLSDHIES 564 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 270 bits (689), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 179/567 (31%), Positives = 286/567 (50%), Gaps = 26/567 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y +V+ G++ ACQ QAC+R + D+ E S+ F Y F ++ A + K++ L HTKG+ Sbjct: 15 YARNVVRGKITACQYVIQACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKFIQLLPHTKGE 74 Query: 69 LAGQR----IEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 A +R +EP Q+F+ +GWV + T LRRF++ Y ++ RKN KS A V Y Sbjct: 75 WAFKRMLITLEPW--QLFIVCCAFGWVQKGTKLRRFREVYTEIPRKNGKSAISAGVALYC 132 Query: 125 AMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISA 184 E +EVY GAT +Q+ V+ + L E F I +L + Sbjct: 133 FTCDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPLLVEAFGIEVNA-SNLNRPEDGAR 191 Query: 185 LSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPC 244 G GDG + C I+DEYH HPT +Y +++G GAR PLM ITTAG+N+ PC Sbjct: 192 FEPLIGNPGDGASPHCAIVDEYHEHPTDALYTTMLTGMGARRQPLMWAITTAGYNIEGPC 251 Query: 245 YRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLK 304 Y + + + N + N E F ++ +D+ D+ T+P+V EKANP + + FL Sbjct: 252 YDKRREVIEML---NGSVPNNELFGVIYTVDEGDDWTDPKVLEKANPNI-GVSVYRDFLL 307 Query: 305 GELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKE-TVELSELKGLECTVGV 363 + Q A++ F TK++N WV + + ++ W+NC++ T+ L +G C + Sbjct: 308 SQQQRAINNARHAGVFKTKHLNVWVAAR-TAFFNLVSWQNCEDKTLTLELFEGQPCVLAF 366 Query: 364 DLSAKIDLTSISFEFKK--DDK---YIVLSHSFMPEDTL--AEKRQTDKVP--YDLWVQQ 414 DL+ K+D+ S++ F + D K Y V ++P DT+ EK + + + WV+ Sbjct: 367 DLARKLDMNSMARLFTREIDGKTHFYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEM 426 Query: 415 KWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQ 474 ++T T GA VDY +I + K + + E DP+ AT D+ E + I Q Sbjct: 427 GFLTVTDGAEVDYRYILEEAKAANKLN--PVSESPIDPFGATGLSHDLADENLNPVTIIQ 484 Query: 475 GMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQ-DANENIMLD-KSKATERID 532 +S P K+ + + H+ NP++ W N + K N++++ K +A +ID Sbjct: 485 NYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPIKEQAENKID 544 Query: 533 PIAAVINSHVRCMLNSGEVDLNSYILS 559 A+I + R ML E L+ +I S Sbjct: 545 GAVALIMAVGRAMLYEKEDTLSDHIES 571 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 268 bits (685), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 174/553 (31%), Positives = 277/553 (50%), Gaps = 27/553 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 + DV+ G+V AC+ AC+R L D+ S F Y F KA + L+ + L HTKG+ Sbjct: 15 FARDVVRGKVPACRWVILACQRHLDDLAASKSAAFKYKFDPAKAEKKLRLIQLLPHTKGE 74 Query: 69 LAGQR----IEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 A +R +EP Q+F + +GWV + TG RRF+++YW+V RKN KS A VG Sbjct: 75 WAYKRQLVTLEPW--QLFGLACTFGWVRKKTGFRRFRESYWEVPRKNGKSVIAAGVGIAM 132 Query: 125 AMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISA 184 A E +EVY GAT Q+ V+ + + L E I + L S Sbjct: 133 FTADDEFGAEVYCGATTERQAWEVFRPARLMVKRSPLLIEHLGIEVNA-QALNRPEDGSR 191 Query: 185 LSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPC 244 G GDG + C I DEYH H T+ Y+ +++G GAR PLM +ITTAG N+ PC Sbjct: 192 FEPIIGNPGDGASPSCAIEDEYHEHDTNAQYETMLTGMGARRQPLMFVITTAGANIEGPC 251 Query: 245 YRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLK 304 Y Q + + + ++E F + +D+DD+ T+P V KANP + Q +L+ Sbjct: 252 YDKRRQVIEML---EGTVPDDELFGWIWTIDEDDDWTDPRVLAKANPNI-GISVYQEYLE 307 Query: 305 GELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKE-TVELSELKGLECTVGV 363 + Q A+ F TK++N W K GY +++ WK C++ ++ L + +G +C + + Sbjct: 308 SQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKACEDRSLSLEQFEGQDCVLAL 366 Query: 364 DLSAKIDLTSISFEFKKD-----DKYIVLSHSFMPEDTL---AEKRQTDKVPYDLWVQQK 415 D++ K+DL S++ F +D + V ++PEDT+ +R ++ Y WV Sbjct: 367 DMARKLDLNSMARLFWRDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAER--YQAWVNHG 424 Query: 416 WITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQG 475 ++ T GA +DY I + E + + ++ DP AT + EG T + I Q Sbjct: 425 FLIETDGAEIDYREILEEAK--EANRRCPVQCTPLDPHGATNLSHQLADEGLTPVTIVQN 482 Query: 476 MATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQ-DANENIMLDKSKATE-RIDP 533 +S P K+ + ++ H+ NP++ W SN I K N++++ + + +ID Sbjct: 483 YTNMSDPMKELEAAITSRRFHHDGNPIMTWCISNVIGKNLPGNDDVVRPVKQGNDNKIDG 542 Query: 534 IAAVINSHVRCML 546 A+I + R ML Sbjct: 543 AVALIMAVGRAML 555 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 266 bits (680), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 178/557 (31%), Positives = 284/557 (50%), Gaps = 32/557 (5%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y DV+ G++VACQ QAC+R L D+ E S+ F Y F ++ A R K++ L HTKG+ Sbjct: 15 YARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERVAKFIQLLPHTKGE 74 Query: 69 LAGQR----IEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 A +R +EP Q+FV +GWV++ + LRRF++ Y ++ RKN KS A V Y Sbjct: 75 WAFKRMPITLEPW--QLFVICCAFGWVNKGSRLRRFREVYTEIPRKNGKSAISAGVALYC 132 Query: 125 AMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISA 184 E +EVY GAT +Q+ V+ + L E F I ++ + Sbjct: 133 FACDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPMLTEAFGIEVNA-SNMNRPEDGAR 191 Query: 185 LSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPC 244 G GDG + C ++DEYH H T +Y +++G GAR PLM ITTAG+N+ PC Sbjct: 192 FEPLIGNPGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPC 251 Query: 245 YRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPIL--CSYEEGQSF 302 Y + + + N + N+E F ++ +D+ D+ T+P+V EKANP + Y E F Sbjct: 252 YDKRREVIEML---NGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYRE---F 305 Query: 303 LKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKE-TVELSELKGLECTV 361 L + Q A + F TK++N WV + + Y ++ W++C++ ++ L + +G C + Sbjct: 306 LLSQQQRAKNNARLANVFKTKHLNIWVSAR-SAYFNLVSWQSCEDKSLTLEQFEGQPCIL 364 Query: 362 GVDLSAKIDLTSISFEFKK--DDK---YIVLSHSFMPEDTL-----AEKRQTDKVPYDLW 411 DL+ K+D+ S++ + + D K Y V ++P DT+ E R+T + + W Sbjct: 365 AFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAER-FQKW 423 Query: 412 VQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIE 471 V+ +T T GA VDY +I + K + E DP+ AT D+ E + Sbjct: 424 VEMGVLTVTDGAEVDYRYILEEAKAANKIS--PVSESPIDPFGATGLSHDLADEDLNPVT 481 Query: 472 IRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQ-DANENIMLD-KSKATE 529 I Q A +S P K+ + + H+ NP++ W N + K N++++ K +A Sbjct: 482 IVQNFANMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKNMPGNDDLVKPVKEQAEN 541 Query: 530 RIDPIAAVINSHVRCML 546 +ID A+I + R ML Sbjct: 542 KIDGAVALIMTIGRAML 558 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 259 bits (663), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 167/553 (30%), Positives = 277/553 (50%), Gaps = 23/553 (4%) Query: 7 MDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTK 66 + + DV+ G+ AC+ + ACKR L D+ +DF + F E A R L + L HTK Sbjct: 12 LKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTK 71 Query: 67 GKLA--GQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 G+ A GQ + Q F +GW+++ TG RRF+++YW+V RKN KS + A VG Sbjct: 72 GEWAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVTAAGVGIGM 131 Query: 125 AMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISA 184 + E +EVY GAT +Q+ V+ + + L + I ++ + S Sbjct: 132 FVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEV-NASNMNKPADGSR 190 Query: 185 LSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPC 244 G GDG + C I+DEYH H ++ +Y+ +++G GAR PLM IITTAG N+ PC Sbjct: 191 FEPIIGNPGDGASPSCAIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEGPC 250 Query: 245 YRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLK 304 + Q + + + ++E F + +D+ D+ T+P V KANP + Q +L+ Sbjct: 251 FDKRRQVIEML---EGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNI-GISVYQDYLE 306 Query: 305 GELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKE-TVELSELKGLECTVGV 363 + Q A+ F TK++N W K GY +++ WK+C++ ++ L + +G +C + + Sbjct: 307 SQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQDCVLAL 365 Query: 364 DLSAKIDLTSISFEFKKD-----DKYIVLSHSFMPEDTL---AEKRQTDKVPYDLWVQQK 415 D++ K+DL S++ F D + V ++PEDT+ +R ++ Y WV Q Sbjct: 366 DMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEDTVRNTENRRMAER--YQAWVNQG 423 Query: 416 WITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQG 475 + T GA +DY I ++ + + + DP AT + EG T + I Q Sbjct: 424 CLLETDGAEIDYRDILEEAKDANRLCPVQCTPL--DPHGATNLSHQLADEGLTPVTIVQN 481 Query: 476 MATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQ-DANENIMLDKSKATE-RIDP 533 +S P K+ + + H+ NP++ W SN I K N++++ + + +ID Sbjct: 482 YTNMSDPMKELEAAITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDG 541 Query: 534 IAAVINSHVRCML 546 A+I + R ML Sbjct: 542 AVALIMAVGRAML 554 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 259 bits (663), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 175/554 (31%), Positives = 292/554 (52%), Gaps = 27/554 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y V+ ++ + +K +AC R L D++R EDF +V+ EKA + ++ + K Sbjct: 21 YAKMVVDEQIKSSKKVFKACLRHLNDLKRIDDEDFKFVYLPEKAADPINFIEILPDVK-- 78 Query: 69 LAGQRIEPHSIQIFVFSNIYGWVHR-NTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMA 127 G+ Q F+ N+YGW + + LRRF+KA V RKN K+ +A + YE + Sbjct: 79 -TGKPYPLAMFQKFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFL- 136 Query: 128 FGENMS---EVYVGATKTEQSKIVWNEIKAQMNGCE----DLKEKFNIAYGKIEHLKTDS 180 FG N S +++ A Q+KI W+ K Q++ D+++ I ++++L +S Sbjct: 137 FGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLHDES 196 Query: 181 FISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNL 240 +I ALS+D G + DG G++DE+ A T+E+ ++L SG G NP ++II+TAG +L Sbjct: 197 YIRALSRDTG-AVDGFEPYVGVLDEFAASKTNEMLELLESGQGQLDNPFILIISTAGMDL 255 Query: 241 SHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPIL---CSYE 297 + P + +EY Y++KILD +I +E YF V E D ++EI + W K+NPIL ++ Sbjct: 256 NVPMHTIEYPYITKILDG--EITDEGYFGYVAEQDNEEEIKDESNWIKSNPILEVEALHD 313 Query: 298 EGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGL 357 + +L+ + +L+ E + L KN N W E Y+D Q W+ + ++ + Sbjct: 314 KLMDYLRTRRRVSLETGE-INKVLIKNFNMWRQSSEESYIDKQSWELAQ--IDKPDTYKR 370 Query: 358 ECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPED-TLAEKRQTDKVPYDLWVQQKW 416 +GVD+ DL +IS DD + + S SF+ L K + D V Y +Q + Sbjct: 371 RVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGVSYSNLERQGY 430 Query: 417 --ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEG--YTMIEI 472 ITT V+D E + I M +++++ IC DP+ + +E + +IE+ Sbjct: 431 CEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEKRHPEWPLIEV 490 Query: 473 RQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERID 532 Q L+ PTK FR+ + K+ H+ NP+L A +NA K D N + +DK+K + +ID Sbjct: 491 SQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTD-NNGMRIDKNKNSNKID 549 Query: 533 PIAAVINSHVRCML 546 P+ A ++ + C L Sbjct: 550 PLDAALDGYAVCYL 563 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 257 bits (657), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 170/563 (30%), Positives = 284/563 (50%), Gaps = 29/563 (5%) Query: 7 MDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTK 66 + + DV+ G+ AC+ + ACKR L D+ +DF + F E A R L + L HTK Sbjct: 12 LKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIELLPHTK 71 Query: 67 GKLAGQR----IEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGS 122 G+ A ++ +EP Q F +GW+++ TG RRF+++YW+V RKN KS A VG Sbjct: 72 GEWAFRKQLVTLEPW--QKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVIAAGVGI 129 Query: 123 YEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFI 182 + E +EVY GAT +Q+ V+ + + +L +I K + Sbjct: 130 GMFVLDDEFGAEVYAGATTEKQAWEVFRPARLMVKRSPELIVAADIEVNASNMNKPEDG- 188 Query: 183 SALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSH 242 S G GDG + C I+DEYH H ++ +Y+ +++G GAR PLM IITTAG N+ Sbjct: 189 SRFEPLIGNPGDGASPSCSIVDEYHEHDSAALYETMLTGMGARRQPLMFIITTAGANIEG 248 Query: 243 PCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSF 302 PC+ Q + + + ++E F + +D+ D+ T+P V KANP + Q + Sbjct: 249 PCFDKRRQVIEML---EGTVPDDELFGWIWTIDEGDDWTDPRVLAKANPNI-GISVYQDY 304 Query: 303 LKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKE-TVELSELKGLECTV 361 L+ + Q A+ F TK++N W K GY +++ WK+C++ ++ L + +G +C + Sbjct: 305 LESQQQRAIKSARFTNTFKTKHLNVWTSAKA-GYFNLEDWKSCEDRSLTLEQFEGQDCVL 363 Query: 362 GVDLSAKIDLTSISFEFKKD-----DKYIVLSHSFMPEDTL---AEKRQTDKVPYDLWVQ 413 +D++ K+DL S++ F D + V ++PE+T+ +R ++ Y WV Sbjct: 364 ALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFWVPEETVRNTENRRMAER--YQAWVN 421 Query: 414 QKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIR 473 Q + T GA +DY I ++ + + + DP AT +E EG T + I Sbjct: 422 QGCLLETDGAEIDYRDILEEAKDANRLCPVQCTPL--DPHGATNLSHQLEDEGLTPVTIV 479 Query: 474 QGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQ-DANENIMLDKSKATE-RI 531 Q +S P K+ + + H+ NP++ W SN I K N++++ + + +I Sbjct: 480 QNYTNMSDPMKELEAAITAGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDNKI 539 Query: 532 DPIAAVINSHVRCML--NSGEVD 552 D A+I + R ML ++G +D Sbjct: 540 DGAVALIMAIGRAMLENHAGSID 562 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 246 bits (627), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 175/543 (32%), Positives = 279/543 (51%), Gaps = 25/543 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLF-KHTKG 67 Y + V G++ + K+ C+R LR +E G +VF EE A R ++++ F K +KG Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 68 KLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMA 127 ++P Q F+ +++GWVH+ T LRRFK+A +GRKN K+ +++ V +Y Sbjct: 74 SKRQLVLQPW--QHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQ 131 Query: 128 FGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSK 187 GEN +E+++ A +Q++I+++E KA + L+E F +I + T S I + Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRPLRDEIHYDATISKIMPQAS 191 Query: 188 DAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRV 247 D+ K DGLN GI DE H ++ V+ + AR PL++ ITTAG+ L P + Sbjct: 192 DSDKL-DGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDM 250 Query: 248 EYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSF----L 303 + LD IE+E F + LD DD+I + W KANP L G S + Sbjct: 251 -VEAGRDTLDQ--IIEDERTFYYLASLDDDDDINDSSNWIKANPNL-----GVSIDLDEM 302 Query: 304 KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGV 363 K E + A P + +F+TK N + + E ++D + E + L EL+G CT+G Sbjct: 303 KEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIISLDELEGRPCTIGY 362 Query: 364 DLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPG 422 DLS D T+ F D+ K VL+HS++P+ + + +K+PY W + +T Sbjct: 363 DLSETEDFTAACATFALDNGKVAVLTHSWIPKHKV--EYSNEKIPYREWEEDGLLTIQDK 420 Query: 423 AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGP 482 +DY+ + I M + + +++I D NA + Q+++ G+ E RQG TLS Sbjct: 421 PYIDYQDVLNWIIKM--NEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 483 TKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVINSHV 542 KD +E K+I NNNP++ W +N K D N N + K +ID AA +N++ Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 Query: 543 RCM 545 M Sbjct: 539 DIM 541 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 246 bits (627), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 174/543 (32%), Positives = 280/543 (51%), Gaps = 25/543 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLF-KHTKG 67 Y + V G++ + K+ C+R LR +E G +VF EE A R ++++ F K +KG Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 68 KLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMA 127 ++P Q F+ +++GWVH+ T LRRFK+A +GRKN K+ +++ V +Y Sbjct: 74 SKRQLVLQPW--QHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQ 131 Query: 128 FGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSK 187 GEN +E+++ A +Q++I+++E KA + L+E F +I + T S I + Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRPLRDEIHYDATISKIMPQAS 191 Query: 188 DAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRV 247 D+ K DGLN GI DE H ++ V+ + AR PL++ ITTAG+ L P + Sbjct: 192 DSDKL-DGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVNM 250 Query: 248 EYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSF----L 303 + LD IE+E F + LD DD+I + W KANP L G S + Sbjct: 251 -VEAGRDTLDR--IIEDERTFYYLASLDDDDDINDSSNWIKANPNL-----GVSIDLDEM 302 Query: 304 KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGV 363 K E + A P++ +F+TK N + + E ++D + + + L EL+G CT+G Sbjct: 303 KEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGY 362 Query: 364 DLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPG 422 DLS D T+ F D+ K VL+HS++P+ + + +K+PY W + +T Sbjct: 363 DLSETEDFTAACATFALDNGKVAVLTHSWIPKHKV--EYSNEKIPYIEWEEDGLLTIQDN 420 Query: 423 AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGP 482 +DY+ + I M + + +++I D NA + Q+++ G+ E RQG TLS Sbjct: 421 PYIDYQDVLNWIIKM--NEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 483 TKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVINSHV 542 KD +E K+I NNNP++ W +N K D N N + K +ID AA +N++ Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 Query: 543 RCM 545 M Sbjct: 539 DIM 541 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 245 bits (625), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 176/543 (32%), Positives = 278/543 (51%), Gaps = 25/543 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLF-KHTKG 67 Y + V G++ + K+ C+R LR +E G +VF EE A R ++++ F K +KG Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 68 KLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMA 127 ++P Q F+ +++GWVH+ T LRRFK+A +GRKN K+ +++ V +Y Sbjct: 74 SKRQLVLQPW--QHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQ 131 Query: 128 FGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSK 187 GEN +E+++ A +Q++I+++E KA + L + F +I + T S I + Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQAS 191 Query: 188 DAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRV 247 D+ K DGLN GI DE H ++ V+ + AR PL++ ITTAG+ L P + Sbjct: 192 DSDKL-DGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDM 250 Query: 248 EYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSF----L 303 + LD IE+E F + LD DD+I + W KANP L G S + Sbjct: 251 -VEAGRDTLDQ--IIEDERTFYYLASLDDDDDINDSSNWIKANPNL-----GVSINLDEM 302 Query: 304 KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGV 363 K E + A P + +F+TK N + + E ++D + E V L EL+G CT+G Sbjct: 303 KEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGY 362 Query: 364 DLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPG 422 DLS D T+ F D+ K VLSHS++P+ + + +K+PY W + +T Sbjct: 363 DLSETEDFTAACATFALDNGKVAVLSHSWIPKHKV--EYSNEKIPYREWEEDGLLTVQDK 420 Query: 423 AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGP 482 +DY+ + I M + + +++I D NA + Q+++ G+ E RQG TLS Sbjct: 421 PYIDYQDVLNWIIKM--NEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 483 TKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVINSHV 542 KD +E K+I NNNP++ W +N K D N N + K +ID AA +N++ Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 Query: 543 RCM 545 M Sbjct: 539 DIM 541 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 245 bits (625), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 176/543 (32%), Positives = 278/543 (51%), Gaps = 25/543 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLF-KHTKG 67 Y + V G++ + K+ C+R LR +E G +VF EE A R ++++ F K +KG Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 68 KLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMA 127 ++P Q F+ +++GWVH+ T LRRFK+A +GRKN K+ +++ V +Y Sbjct: 74 SKRQLVLQPW--QHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQ 131 Query: 128 FGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSK 187 GEN +E+++ A +Q++I+++E KA + L + F +I + T S I + Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQAS 191 Query: 188 DAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRV 247 D+ K DGLN GI DE H ++ V+ + AR PL++ ITTAG+ L P + Sbjct: 192 DSDKL-DGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDM 250 Query: 248 EYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSF----L 303 + LD IE+E F + LD DD+I + W KANP L G S + Sbjct: 251 -VEAGRDTLDQ--IIEDERTFYYLASLDDDDDINDSSNWIKANPNL-----GVSINLDEM 302 Query: 304 KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGV 363 K E + A P + +F+TK N + + E ++D + E V L EL+G CT+G Sbjct: 303 KEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGY 362 Query: 364 DLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPG 422 DLS D T+ F D+ K VLSHS++P+ + + +K+PY W + +T Sbjct: 363 DLSETEDFTAACATFALDNGKVAVLSHSWIPKHKV--EYSNEKIPYREWEEDGLLTVQDK 420 Query: 423 AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGP 482 +DY+ + I M + + +++I D NA + Q+++ G+ E RQG TLS Sbjct: 421 PYIDYQDVLNWIIKM--NEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 483 TKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVINSHV 542 KD +E K+I NNNP++ W +N K D N N + K +ID AA +N++ Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 Query: 543 RCM 545 M Sbjct: 539 DIM 541 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 244 bits (624), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 175/543 (32%), Positives = 278/543 (51%), Gaps = 25/543 (4%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLF-KHTKG 67 Y + V G++ + ++ C+R LR +E G +VF EE A R ++++ F K +KG Sbjct: 18 YAEQVTQGKIKTSKYVRKECERHLRYLENGGK----WVFDEELAHRPIRFIEKFCKPSKG 73 Query: 68 KLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMA 127 ++P Q F+ +++GWVH+ T LRRFK+A +GRKN K+ +++ V +Y Sbjct: 74 SKRQLVLQPW--QHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQ 131 Query: 128 FGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSK 187 GEN +E+++ A +Q++I+++E KA + L + F +I + T S I + Sbjct: 132 DGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYDATISKIMPQAS 191 Query: 188 DAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRV 247 D+ K DGLN GI DE H ++ V+ + AR PL++ ITTAG+ L P + Sbjct: 192 DSDKL-DGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDM 250 Query: 248 EYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSF----L 303 + LD IE+E F + LD DD+I + W KANP L G S + Sbjct: 251 -VEAGRDTLDQ--IIEDERTFYYLASLDDDDDINDSSNWIKANPNL-----GVSINLDEM 302 Query: 304 KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGV 363 K E + A P + +F+TK N + + E ++D + E V L EL+G CT+G Sbjct: 303 KEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGY 362 Query: 364 DLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPG 422 DLS D T+ F D+ K VLSHS++P+ + + +K+PY W + +T Sbjct: 363 DLSETEDFTAACATFALDNGKVAVLSHSWIPKHKV--EYSNEKIPYREWEEDGLLTVQDK 420 Query: 423 AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGP 482 +DY+ + I M + + +++I D NA + Q+++ G+ E RQG TLS Sbjct: 421 PYIDYQDVLNWIIKM--NEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA 478 Query: 483 TKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVINSHV 542 KD +E K+I NNNP++ W +N K D N N + K +ID AA +N++ Sbjct: 479 LKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYT 538 Query: 543 RCM 545 M Sbjct: 539 DIM 541 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 236 bits (603), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 164/576 (28%), Positives = 290/576 (50%), Gaps = 31/576 (5%) Query: 5 WMMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKH 64 ++ Y V+ GE++A K+ Q CKR L +E + KA++F++ + K Sbjct: 4 YVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPK- 62 Query: 65 TKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 Q + Q F+ ++YGW R R F KAY + RK KS ++ + S Sbjct: 63 -----TNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGM-SVN 114 Query: 125 AMAFGENMS---EVYVGATKTEQSKIVWNEIKAQMNGCED----LKEKFNIAYGKIEHLK 177 + FG+ ++YV ++ +Q++ ++ Q+N ++EK ++ IE + Sbjct: 115 ELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL 174 Query: 178 TDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAG 237 + S + LS + + DG + I+DE + P E+Y +G + NPL ++++TAG Sbjct: 175 SSSVFAPLSNNPD-AVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 Query: 238 FNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYE 297 NL+ Y+ EY+Y+ +IL+ + +N YFV E+D +E+ + W KA P+L S E Sbjct: 234 DNLNSQMYQ-EYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKE 290 Query: 298 EGQSFL---KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSEL 354 ++ L K ++Q L+ L KN N W +E+ +D+ W+ + + Sbjct: 291 HRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV--ITPMPNI 348 Query: 355 KGLECTVGVDLSAKIDLTSISFEFKKDDKYIVL-SHSFMPEDT-LAEKRQTDKVPYDLWV 412 G + +GVDLS DLTS+ F F DDK + L SHSF+ T L +K + DK+ Y+L + Sbjct: 349 NGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAI 408 Query: 413 QQKWITTTPG--AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDME--AEGYT 468 ++ TT ++DY+ + I H ++ +C DPWNA F+ +E A + Sbjct: 409 ERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP 468 Query: 469 MIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKAT 528 +IE+ Q LS K+FR V +++ HN+N +L + +NA+ +D +N+ ++K Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 529 ERIDPIAAVINSHVRCMLNSGEVDLNSYILSQDFSF 564 ++IDPI ++I + ++ + + S++F F Sbjct: 529 QKIDPIISIITAFTEARMHEFQENWTEKYESEEFGF 564 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 236 bits (603), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 164/576 (28%), Positives = 290/576 (50%), Gaps = 31/576 (5%) Query: 5 WMMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKH 64 ++ Y V+ GE++A K+ Q CKR L +E + KA++F++ + K Sbjct: 4 YVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPK- 62 Query: 65 TKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 Q + Q F+ ++YGW R R F KAY + RK KS ++ + S Sbjct: 63 -----TNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGM-SVN 114 Query: 125 AMAFGENMS---EVYVGATKTEQSKIVWNEIKAQMNGCED----LKEKFNIAYGKIEHLK 177 + FG+ ++YV ++ +Q++ ++ Q+N ++EK ++ IE + Sbjct: 115 ELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL 174 Query: 178 TDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAG 237 + S + LS + + DG + I+DE + P E+Y +G + NPL ++++TAG Sbjct: 175 SSSVFAPLSNNPD-AVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 Query: 238 FNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYE 297 NL+ Y+ EY+Y+ +IL+ + +N YFV E+D +E+ + W KA P+L S E Sbjct: 234 DNLNSQMYQ-EYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKE 290 Query: 298 EGQSFL---KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSEL 354 ++ L K ++Q L+ L KN N W +E+ +D+ W+ + + Sbjct: 291 HRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV--ITPMPNI 348 Query: 355 KGLECTVGVDLSAKIDLTSISFEFKKDDKYIVL-SHSFMPEDT-LAEKRQTDKVPYDLWV 412 G + +GVDLS DLTS+ F F DDK + L SHSF+ T L +K + DK+ Y+L + Sbjct: 349 NGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAI 408 Query: 413 QQKWITTTPG--AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDME--AEGYT 468 ++ TT ++DY+ + I H ++ +C DPWNA F+ +E A + Sbjct: 409 ERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP 468 Query: 469 MIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKAT 528 +IE+ Q LS K+FR V +++ HN+N +L + +NA+ +D +N+ ++K Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 529 ERIDPIAAVINSHVRCMLNSGEVDLNSYILSQDFSF 564 ++IDPI ++I + ++ + + S++F F Sbjct: 529 QKIDPIISIITAFTEARMHEFQENWTEKYESEEFGF 564 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 236 bits (603), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 164/576 (28%), Positives = 290/576 (50%), Gaps = 31/576 (5%) Query: 5 WMMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKH 64 ++ Y V+ GE++A K+ Q CKR L +E + KA++F++ + K Sbjct: 4 YVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPK- 62 Query: 65 TKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 Q + Q F+ ++YGW R R F KAY + RK KS ++ + S Sbjct: 63 -----TNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGM-SVN 114 Query: 125 AMAFGENMS---EVYVGATKTEQSKIVWNEIKAQMNGCED----LKEKFNIAYGKIEHLK 177 + FG+ ++YV ++ +Q++ ++ Q+N ++EK ++ IE + Sbjct: 115 ELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL 174 Query: 178 TDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAG 237 + S + LS + + DG + I+DE + P E+Y +G + NPL ++++TAG Sbjct: 175 SSSVFAPLSNNPD-AVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 Query: 238 FNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYE 297 NL+ Y+ EY+Y+ +IL+ + +N YFV E+D +E+ + W KA P+L S E Sbjct: 234 DNLNSQMYQ-EYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKE 290 Query: 298 EGQSFL---KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSEL 354 ++ L K ++Q L+ L KN N W +E+ +D+ W+ + + Sbjct: 291 HRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV--ITPMPNI 348 Query: 355 KGLECTVGVDLSAKIDLTSISFEFKKDDKYIVL-SHSFMPEDT-LAEKRQTDKVPYDLWV 412 G + +GVDLS DLTS+ F F DDK + L SHSF+ T L +K + DK+ Y+L + Sbjct: 349 NGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAI 408 Query: 413 QQKWITTTPG--AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDME--AEGYT 468 ++ TT ++DY+ + I H ++ +C DPWNA F+ +E A + Sbjct: 409 ERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP 468 Query: 469 MIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKAT 528 +IE+ Q LS K+FR V +++ HN+N +L + +NA+ +D +N+ ++K Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 529 ERIDPIAAVINSHVRCMLNSGEVDLNSYILSQDFSF 564 ++IDPI ++I + ++ + + S++F F Sbjct: 529 QKIDPIISIITAFTEARMHEFQENWTEKYESEEFGF 564 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 236 bits (601), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 164/576 (28%), Positives = 290/576 (50%), Gaps = 31/576 (5%) Query: 5 WMMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKH 64 ++ Y V+ GE++A K+ Q CKR L +E + KA++F++ + K Sbjct: 4 YVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPK- 62 Query: 65 TKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 Q + Q F+ ++YGW R R F KAY + RK KS ++ + S Sbjct: 63 -----TNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGM-SVN 114 Query: 125 AMAFGENMS---EVYVGATKTEQSKIVWNEIKAQMNGCED----LKEKFNIAYGKIEHLK 177 + FG+ ++YV ++ +Q++ ++ Q+N ++EK ++ IE + Sbjct: 115 ELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL 174 Query: 178 TDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAG 237 + S + LS + + DG + I+DE + P E+Y +G + NPL ++++TAG Sbjct: 175 SSSVFAPLSNNPD-AVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 Query: 238 FNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYE 297 NL+ Y+ EY+Y+ +IL+ + +N YFV E+D +E+ + W KA P+L S E Sbjct: 234 DNLNSQMYQ-EYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKE 290 Query: 298 EGQSFL---KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSEL 354 ++ L K ++Q L+ L KN N W +E+ +D+ W+ + + Sbjct: 291 HRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV--ITPMPNI 348 Query: 355 KGLECTVGVDLSAKIDLTSISFEFKKDDKYIVL-SHSFMPEDT-LAEKRQTDKVPYDLWV 412 G + +GVDLS DLTS+ F F DDK + L SHSF+ T L +K + DK+ Y+L + Sbjct: 349 NGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAI 408 Query: 413 QQKWITTTPG--AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDME--AEGYT 468 ++ TT ++DY+ + I H ++ +C DPWNA F+ +E A + Sbjct: 409 ERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP 468 Query: 469 MIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKAT 528 +IE+ Q LS K+FR V +++ HN+N +L + +NA+ +D +N+ ++K Sbjct: 469 LIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 529 ERIDPIAAVINSHVRCMLNSGEVDLNSYILSQDFSF 564 ++IDPI ++I + ++ + + S++F F Sbjct: 529 QKIDPIISIITAFTEARMHEFQENWTEKYESEEFGF 564 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 236 bits (601), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 164/576 (28%), Positives = 290/576 (50%), Gaps = 31/576 (5%) Query: 5 WMMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKH 64 ++ Y V+ GE++A K+ Q CKR L +E + KA++F++ + K Sbjct: 4 YVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPK- 62 Query: 65 TKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 Q + Q F+ ++YGW R R F KAY + RK KS ++ + S Sbjct: 63 -----TNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGM-SVN 114 Query: 125 AMAFGENMS---EVYVGATKTEQSKIVWNEIKAQMNGCED----LKEKFNIAYGKIEHLK 177 + FG+ ++YV ++ +Q++ ++ Q+N ++EK ++ IE + Sbjct: 115 ELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL 174 Query: 178 TDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAG 237 + S + LS + + DG + I+DE + P E+Y +G + NPL ++++TAG Sbjct: 175 SSSVFAPLSNNPD-AVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 Query: 238 FNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYE 297 NL+ Y+ EY+Y+ +IL+ + +N YFV E+D +E+ + W KA P+L S E Sbjct: 234 DNLNSQMYQ-EYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKE 290 Query: 298 EGQSFL---KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSEL 354 ++ L K ++Q L+ L KN N W +E+ +D+ W+ + + Sbjct: 291 HRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV--ITPMPNI 348 Query: 355 KGLECTVGVDLSAKIDLTSISFEFKKDDKYIVL-SHSFMPEDT-LAEKRQTDKVPYDLWV 412 G + +GVDLS DLTS+ F F DDK + L SHSF+ T L +K + DK+ Y+L + Sbjct: 349 NGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAI 408 Query: 413 QQKWITTTPG--AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDME--AEGYT 468 ++ TT ++DY+ + I H ++ +C DPWNA F+ +E A + Sbjct: 409 ERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP 468 Query: 469 MIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKAT 528 +IE+ Q LS K+FR V +++ HN+N +L + +NA+ +D +N+ ++K Sbjct: 469 LIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 529 ERIDPIAAVINSHVRCMLNSGEVDLNSYILSQDFSF 564 ++IDPI ++I + ++ + + S++F F Sbjct: 529 QKIDPIISIITAFTEARMHEFQENWTEKYESEEFGF 564 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 233 bits (594), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 163/576 (28%), Positives = 289/576 (50%), Gaps = 31/576 (5%) Query: 5 WMMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKH 64 ++ Y V+ GE++A K+ Q CKR L +E + KA++F++ + K Sbjct: 4 YVTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWDNHLSNKAIKFVEMLPDPK- 62 Query: 65 TKGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 Q + Q F+ ++YGW R R F KAY + RK KS ++ + S Sbjct: 63 -----TNQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGM-SVN 114 Query: 125 AMAFGENMS---EVYVGATKTEQSKIVWNEIKAQMNGCED----LKEKFNIAYGKIEHLK 177 + FG+ ++YV ++ +Q++ ++ Q+N ++EK ++ IE + Sbjct: 115 ELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIEDVL 174 Query: 178 TDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAG 237 + S + LS + + DG + I+DE + P E+Y +G + NPL ++++TAG Sbjct: 175 SSSVFAPLSNNPD-AVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG 233 Query: 238 FNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYE 297 NL+ Y+ EY+Y+ +IL+ + +N YFV E+D +E+ + W KA P+L S E Sbjct: 234 DNLNSQMYQ-EYKYIKRILNEEVRADN--YFVYCAEMDSQEEVQDETKWIKAMPLLESKE 290 Query: 298 EGQSFL---KGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSEL 354 ++ L K ++Q L+ L KN N W +E+ +D+ W+ + + Sbjct: 291 HRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQV--ITPMPNI 348 Query: 355 KGLECTVGVDLSAKIDLTSISFEFKKDDKYIVL-SHSFMPEDT-LAEKRQTDKVPYDLWV 412 G + +GVDLS DLTS+ F F DDK + L SHSF+ T L +K + DK+ Y+L + Sbjct: 349 NGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELAI 408 Query: 413 QQKWITTTPG--AVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDME--AEGYT 468 ++ TT ++D + + I H ++ +C DPWNA F+ +E A + Sbjct: 409 ERGEAETTQSDSGMIDSKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDWP 468 Query: 469 MIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKAT 528 +IE+ Q LS K+FR V +++ HN+N +L + +NA+ +D +N+ ++K Sbjct: 469 LIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINKKMNR 528 Query: 529 ERIDPIAAVINSHVRCMLNSGEVDLNSYILSQDFSF 564 ++IDPI ++I + ++ + + S++F F Sbjct: 529 QKIDPIISIITAFTEARMHEFQENWTEKYESEEFGF 564 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 203 bits (517), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 152/581 (26%), Positives = 286/581 (49%), Gaps = 40/581 (6%) Query: 6 MMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHT 65 M ++ VL G ++ + A KR D++R D+ + + A + +K+M + Sbjct: 1 MPNFIKRVLDGRLITSKAVNLAVKRHQEDLKRT---DWRWHYDPNLAGKAVKFMEILPEP 57 Query: 66 KGKLAGQRIEPHSIQIFVFSNIYGWVHRN-TGLRRFKKAYWQVGRKNAKSQSLACVGSYE 124 K +G+ Q F+ +IYGWV ++ + +RRF + + RKN KS ++ V YE Sbjct: 58 K---SGKPQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYE 114 Query: 125 AMAFGENMS---EVYVGATKTEQSKIVW----NEIKAQMNGCEDLKEKFNIAYGKIEHLK 177 + FG+N + ++Y A +Q+ IV+ + ++A M +K I ++ +L Sbjct: 115 FL-FGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLD 173 Query: 178 TDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAG 237 S I + S+D G DG ++DEY T+++ + L SG P+ L II+TAG Sbjct: 174 DGSTIRSFSRDTGLV-DGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAG 232 Query: 238 FNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPIL---C 294 F+++ P ++ Y Y K+L + + + E YF + E D E+ +P W K+NP+L Sbjct: 233 FDMNVPMFQQNYPYAKKVL--SGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDT 290 Query: 295 SYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSEL 354 + + +L +L A + L KN N W E+ Y+D WK E + ++ Sbjct: 291 LHSQISDYLTTKLAQAR-ADGSLNAKLVKNFNIWRQATEDSYLDFDAWK-AAELTDKPDI 348 Query: 355 KGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMP-EDTLAEKRQTDKVPYDLWVQ 413 +G +G+D+ DL +IS+ ++ + + ++F+ + + K +TD++ Y L + Sbjct: 349 RGQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDY-LAAE 407 Query: 414 QKW---ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEG--YT 468 Q I++ ++D + + + + + + ++ I DP+ + +E + Sbjct: 408 QHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEWP 467 Query: 469 MIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKAT 528 M+++RQG TLS PTK FR+ V ++ H++N ++ A NA+ D N + ++K+K Sbjct: 468 MVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSD-NNGVRINKNKYA 526 Query: 529 ERIDPIAAVINSHVRCMLNSGEVDLNSY-----ILSQDFSF 564 +ID I A ++++ + DL++Y + S DF F Sbjct: 527 NKIDMIDATLDAYAIAF----KEDLDNYLDDDRVFSDDFGF 563 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 194 bits (494), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 139/441 (31%), Positives = 226/441 (51%), Gaps = 12/441 (2%) Query: 107 VGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKF 166 +GRKN K+ +++ V +Y GEN +E+++ A +Q++I+++E KA + L+E F Sbjct: 1 MGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENF 60 Query: 167 NIAYGKIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARP 226 +I + T S I + D+ K DGLN GI DE H ++ V+ + AR Sbjct: 61 RPLRDEIHYDATISKIMPQASDSDKL-DGLNTHMGIFDEIHEFKDYKLISVIKNSRAARL 119 Query: 227 NPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVW 286 PL++ ITTAG+ L P + + LD IE+E F + LD DD+I + W Sbjct: 120 QPLLIYITTAGYQLDGPLVNM-VEAGRDTLDR--IIEDERTFYYLASLDDDDDINDSSNW 176 Query: 287 EKANPIL-CSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNC 345 KANP L S + + +K E + A P++ +F+TK N + + E ++D + Sbjct: 177 IKANPNLGVSIDLAE--MKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKN 234 Query: 346 KETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDD-KYIVLSHSFMPEDTLAEKRQTD 404 + + L EL+G CT+G DLS D T+ F D+ K VL+HS++P+ + + + Sbjct: 235 NDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKV--EYSNE 292 Query: 405 KVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEA 464 K+PY W + +T +DY+ + I M + + +++I D NA + Q+++ Sbjct: 293 KIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKM--NEHYVVEKITYDRANAFKLNQELKN 350 Query: 465 EGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDK 524 G+ E RQG TLS KD +E K+I NNNP++ W +N K D N N + K Sbjct: 351 YGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSK 410 Query: 525 SKATERIDPIAAVINSHVRCM 545 +ID AA +N++ M Sbjct: 411 QSRYRKIDGFAAFLNTYTDIM 431 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 181 bits (460), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 147/556 (26%), Positives = 270/556 (48%), Gaps = 31/556 (5%) Query: 7 MDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSED-FPYVFKEEKALRFLKWMSLFKHT 65 + Y VL G +++ +K KQACKR + D+ R +D F Y++ E+A + +++ +L K Sbjct: 17 LSYAIGVLDGTIISGEKIKQACKRHIDDLRRIDKDDAFIYIYDSEQAKKIVEFSTLLKDV 76 Query: 66 KGKLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEA 125 +G+ E Q F+ +++ GW + T RFK + + R N K+Q LA Y Sbjct: 77 T---SGEPFEASPYQKFILASVQGWRNPETKGMRFKTIFISMARTNGKTQVLATYALYNF 133 Query: 126 MAFGE-------NMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIA-YGKIEHLK 177 + FG +S + + T + + +N I+ + + L + +I ++ +K Sbjct: 134 L-FGSPKINRQLAVSSIDIAHTHNLFNYMRFNWIQLKDGVFKKLAKALDINDNSQVMEIK 192 Query: 178 TDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPL--MMIITT 235 S + G D + GI+DEYH + + SG NPL M I+T Sbjct: 193 KQSAVMKKLSAQGSPADSDHYTTGIVDEYHLFGQKQRDFISSMTSGMVNNPLAQMFFIST 252 Query: 236 AGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCS 295 AG + + P + +Y+ SK+L+ +E+ V++ E D +DE E W K+NP++ Sbjct: 253 AGVDPTVPMFE-DYKRYSKMLESGDWSSSEKDLVLIWEQDSEDEAYLIETWPKSNPLMEI 311 Query: 296 YEEGQSFLKGEL--QSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSE 353 ++ +G + + +L+ ++R+F KNMN W + K+N Y+ + ++ V+ + Sbjct: 312 ESMRKNLTEGMITERDSLNSQGRIRDFYVKNMNLWQNAKKNAYLPLDLVQDA--IVDEFD 369 Query: 354 LKGLECTVGVDLSAKIDLTSISFEFKKD-DKYIVLSHSFMP---EDTLAEKRQTDKVPYD 409 G + +G D S D TS++F F K+ + HS++P ++ K Q D + Y Sbjct: 370 YFGRDVFIGFDYSQTNDDTSLAFVFPHSGSKFHLYQHSWIPIAKAGSIEAKEQRDNIDYR 429 Query: 410 LWVQQKW---ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDME--A 464 VQ+K IT ++D + + + N + ++ ++K I D W F++ ++ Sbjct: 430 A-VQEKGFATITRDRFGLIDEDEVFNWMLNFIEKNELRVKAILYDQWGTGNFIRRLDEVK 488 Query: 465 EGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDK 524 E Y +I +RQG+ +L+ PTK + + ++ L NA+T D N I LDK Sbjct: 489 EEYLLIPVRQGIKSLNEPTKFLQSSFIKHNITMLDDQALIQGLVNAVTVSD-NNGIKLDK 547 Query: 525 SKATERIDPIAAVINS 540 + +++ID A++N+ Sbjct: 548 NVNSQKIDAADAIVNA 563 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 169 bits (429), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 145/562 (25%), Positives = 270/562 (48%), Gaps = 36/562 (6%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 YC D L G +V K AC R LRD++R+G++DFPY + +A + L++ + + Sbjct: 34 YCFDALEGRIVTGYMIKLACFRHLRDLQRQGNDDFPYTYDTAEADKLLRFARICPNVD-- 91 Query: 69 LAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAM-- 126 G+ + Q F+ ++GW + N G +RF +A VGR K+ +A + +Y Sbjct: 92 -TGEPTQLMPWQKFILCMLFGWRNANGG-KRFSRAIVSVGRGQGKTYLMAILTAYSYFIE 149 Query: 127 AFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIE-HLKTDSFI--- 182 +FG + + V + K +Q+ + IK+ M KE F + E L +D I Sbjct: 150 SFGLSNQDYLVTSIKFKQTNKLLGYIKSMMKQIIQ-KEPFKSLANETELGLHSDQVIMKA 208 Query: 183 -----SALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAG 237 A+S ++G+ D + I DE T +VSG PN + I+TA Sbjct: 209 NNNILRAISAESGQY-DSFHFTTAIFDEMGEIETRNAVSKIVSGQVKVPNRQFIQISTAY 267 Query: 238 FNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYE 297 N S P +R + + + ++ + + E + Y +V D +E+ PE W K+NP+L + Sbjct: 268 PNPSVP-FREDQMIMQQAMEDDDNREADTYLCLVWSQDNLEEVFQPETWMKSNPLLDLEQ 326 Query: 298 EGQSFLKGEL--QSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELK 355 E + +KG L + + + + +F KNMN W+ N ++D++ +N ++ ++K Sbjct: 327 ERDNLMKGLLDKRDSDLLSGNLSDFQVKNMNCWLLADSNSFLDLKDIENA--VIDDFDIK 384 Query: 356 GLECTVGVDLSAKIDLTSISFEFK-----KDDKYIVLSHSFMP---EDTLAEKRQTDKVP 407 G VG+D S D T++ F + K+ + HSF+P ++ K + D + Sbjct: 385 GKRVYVGLDASMFSDNTALGFVYPYLGEDGSQKWHIEQHSFIPWQQAGSIEAKIEQDGIN 444 Query: 408 YDLWVQQKW--ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAE 465 Y + + IT+ P +++ E + + +D+ + D + ++ +E+ Sbjct: 445 YRDLETKGFCTITSHPQGLINPEEVYRWFIDYVEDNSLDVVFFGYDAMMVNKIIKALESN 504 Query: 466 -GYTMIEIRQGMATLSGPTKDFREQVYLK-KVIHNNNPVLNWATSNAITKQDANENIMLD 523 + ++ IRQ + L PTK F + ++++ + ++ ++ A NA+ K+D N I +D Sbjct: 505 TSFPLMPIRQRTSELKDPTK-FLQTLFIEGNITRRDDEIMRKALINAVIKED-NIGIQVD 562 Query: 524 KSKATERIDPIAAVINSHVRCM 545 K K+T +ID + A+I++ M Sbjct: 563 KMKSTYKIDVVDALIDAFYDGM 584 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 169 bits (427), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 146/562 (25%), Positives = 273/562 (48%), Gaps = 35/562 (6%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 YC DVL G++VA + AC R LRD++R+G++DFPYV+ E RFLK++SL + Sbjct: 35 YCFDVLDGKIVAGYNIRLACFRHLRDLQRQGNKDFPYVYSIEAFNRFLKFLSLVPNVDD- 93 Query: 69 LAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLA-CVG-SYEAM 126 Q++EP Q+F+FS I+ W + + RF + R K+ C+ SY Sbjct: 94 -LSQKLEPMDWQLFIFSQIFAWFDLD-NVPRFSNIIISIARSQGKTMIAGICLNFSYLIE 151 Query: 127 AFGENMSEVYVGATKTEQSKIVWNEIKAQM------NGCEDLKE--KFNIAYGKIEHLKT 178 G++ + V + +Q+ ++ +K+ M + L E + + +I+ L Sbjct: 152 IIGQSNQDFLVSSLTFDQTMKLFTYVKSMMARIIENEPFKSLAEETQLQLYSREIKSLLD 211 Query: 179 DSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGF 238 + I+ +S ++GK D + + + DE T E + SG + I+T+ Sbjct: 212 ANTINTISFESGKF-DSKHFKLAVADEVGELRTDEGISKITSGQVNTEGSRFIEISTSYQ 270 Query: 239 NLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEE 298 P ++ E + + +I++ + D ++ ++ D +E+ PE W K+NP+L E Sbjct: 271 TPDVPFHQ-EQKKLIEIMERDFDRSGDDQLCLIWSQDNLEEVFKPETWAKSNPLLNHPEL 329 Query: 299 GQSFLKGELQSALD---VPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELK 355 + +KG L S D + K+ +F KNMN W+ N ++D+ +N + +++ Sbjct: 330 KEGLMKG-LLSERDKKLLMGKLADFQVKNMNCWLLADSNSFLDLTDIENA--VIPEFDIR 386 Query: 356 GLECTVGVDLSAKIDLTSISFEFK-----KDDKYIVLSHSFMP---EDTLAEKRQTDKVP 407 G VG+D S D T+I F + K+ V HSF+P +L K + D V Sbjct: 387 GKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGSLEAKMEQDGVN 446 Query: 408 YDLWVQQKW--ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAE 465 Y ++ + IT+ P +++ E + + +D+ + D ++ ++ +E+ Sbjct: 447 YRDLEEKGYCTITSHPQGLINPEEVYRWFCDYVEDNALDVVFFGYDAMGVSKIIKALESN 506 Query: 466 -GYTMIEIRQGMATLSGPTKDFREQVYLK-KVIHNNNPVLNWATSNAITKQDANENIMLD 523 + ++ IRQ + L PTK F + ++++ + ++ ++ A NA+ K+D N I +D Sbjct: 507 TSFPLMPIRQRTSELKDPTK-FLQTLFIEGNITRLDDEIMRKALINAVIKED-NIGIQVD 564 Query: 524 KSKATERIDPIAAVINSHVRCM 545 K K+T +ID + A+I++ M Sbjct: 565 KMKSTYKIDVVDALIDAFYDAM 586 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 169 bits (427), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 148/508 (29%), Positives = 236/508 (46%), Gaps = 46/508 (9%) Query: 48 KEEKALRFLKWMSLFKHTKGKLAGQRIEPHSIQ----IFVFSNIYGWVHRNTGLRRFKKA 103 + E+ + F++ + +GKL GQ + + Q + V+ N G A Sbjct: 3 RGERVIAFIERFCIVP--EGKLIGQPMRLDTFQKEFILAVYDNPAG----------TDMA 50 Query: 104 YWQVGRKNAKSQSLACVGSYEAMAFGENM---SEVYVGATKTEQSKIVWNEIKAQMNGCE 160 + RKN K+ +A G A G +++ GA EQ+ IV+N +N Sbjct: 51 ILSIARKNGKTGLIA--GILLAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNP 108 Query: 161 DLKEKFNIAYG--KIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHA--HPTSEIYD 216 L+E +I K+ L + ALS + GK+ GL+ I+DE P + D Sbjct: 109 KLQEIVHITPSGKKLIGLPCNVEYKALSAE-GKTTHGLSPILAILDETGQVRGPQDDFID 167 Query: 217 VLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDK 276 + + GA NPL+++I+T N + +S +D + ++ V E K Sbjct: 168 AITTAQGAHENPLLIVISTQAAN--------DADLLSIWIDDAVKSKDPHIVCHVYEAPK 219 Query: 277 DDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGY 336 D +I+ E W ANP L ++ + + + + A +P F N+N+ V + + Sbjct: 220 DADISKRESWLAANPALGTFRSEKDMAR-QAEKAGRMPSFENTFRNLNLNQRVS-TVSPF 277 Query: 337 MDMQKWKNCKETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDK-YIVLSHSFMPED 395 + W+ C E + K G+DLSA+ DLT++ + DD + V + P+ Sbjct: 278 ISRSVWELCGEMPINTPRK---WYAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQK 334 Query: 396 TLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNA 455 TL E+ +TD+ PYD+WV++ + TTPGA VDY F+ I + D F + I D W Sbjct: 335 TLEERTKTDRAPYDVWVREGLLRTTPGASVDYSFVVADIAEIIGD--FDLTSIAFDRWRI 392 Query: 456 TQFMQDMEAEGYT--MIEIRQGMATLSGPTKDFREQVYLK-KVIHNNNPVLNWATSNAIT 512 QF +D +A G + ++E QG + GP D E + L +V H +PVL NA+ Sbjct: 393 DQFRKDADAIGLSLPLVEFGQGFKDM-GPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVV 451 Query: 513 KQDANENIMLDKSKATERIDPIAAVINS 540 +DA N LDKSKAT RID + A+ S Sbjct: 452 VKDAAGNRKLDKSKATGRIDGMVAMTMS 479 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 167 bits (424), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 148/508 (29%), Positives = 237/508 (46%), Gaps = 46/508 (9%) Query: 48 KEEKALRFLKWMSLFKHTKGKLAGQ--RIEP--HSIQIFVFSNIYGWVHRNTGLRRFKKA 103 + E+ + F++ + +GKL GQ R++P + V+ N G A Sbjct: 3 RGERVIAFIERFCIVP--EGKLIGQPMRLDPFQKDFILAVYDNPAG----------TDMA 50 Query: 104 YWQVGRKNAKSQSLACVGSYEAMAFGENM---SEVYVGATKTEQSKIVWNEIKAQMNGCE 160 + RKN K+ +A G A G +++ GA EQ+ IV+N +N Sbjct: 51 ILSIARKNGKTGLIA--GILLAHLVGPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNP 108 Query: 161 DLKEKFNIAYG--KIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHA--HPTSEIYD 216 L+E +I K+ L + ALS + GK+ GL+ I+DE P + D Sbjct: 109 KLQEIVHITPSGKKLIGLPCNVEYKALSAE-GKTTHGLSPILAILDETGQVRGPQDDFID 167 Query: 217 VLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDK 276 + + GA NPL+++I+T N + +S +D + ++ V E K Sbjct: 168 AITTAQGAHENPLLIVISTQAAN--------DADLLSIWIDDAVKSKDPHIVCHVYEAPK 219 Query: 277 DDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGY 336 D +I+ E W ANP L ++ + + + + A +P F N+N+ V + + Sbjct: 220 DADISKRESWLAANPALGTFRSEKDMAR-QAEKAGRMPSFENTFRNLNLNQRVS-TVSPF 277 Query: 337 MDMQKWKNCKETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDK-YIVLSHSFMPED 395 + W+ C E + K G+DLSA+ DLT++ + DD + V + P+ Sbjct: 278 ISRSVWELCGEMPINTPRK---WYAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQK 334 Query: 396 TLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNA 455 TL E+ +TD+ PYD+WV++ + TTPGA VDY F+ I + D F + + D W Sbjct: 335 TLEERTKTDRAPYDVWVREGLLRTTPGASVDYSFVVADIAEIIGD--FDLTSMAFDRWRI 392 Query: 456 TQFMQDMEAEGYT--MIEIRQGMATLSGPTKDFREQVYLK-KVIHNNNPVLNWATSNAIT 512 QF +D +A G + ++E QG + GP D E + L +V H +PVL NA+ Sbjct: 393 DQFRKDADAIGLSLPLVEFGQGFKDM-GPAVDTLESLMLNGRVRHGMHPVLTMCAVNAVV 451 Query: 513 KQDANENIMLDKSKATERIDPIAAVINS 540 +DA N LDKSKAT RID + A+ S Sbjct: 452 VKDAAGNRKLDKSKATGRIDGMVAMTMS 479 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 165 bits (417), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 142/561 (25%), Positives = 270/561 (48%), Gaps = 34/561 (6%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 YC DVL G + A K AC R LRD++R+G++DFPY + ++A R L++ + + Sbjct: 34 YCFDVLEGRITAGYMIKLACFRHLRDLQRQGNDDFPYSYDTDEAARLLRFARICPNVD-- 91 Query: 69 LAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAM-- 126 G+ + + Q F+ ++GW + N G +RF +A VGR K+ +A + +Y Sbjct: 92 -TGEPTKLMAWQKFILCMLFGWRNANGG-KRFSRAIVSVGRGQGKTYLMAILTAYSYFIE 149 Query: 127 AFGENMSEVYVGATKTEQSKIVWNEIKAQMNGC---EDLKEKFN-----IAYGKIEHLKT 178 + G + + V + +Q+ + IK+ M E K N + ++ Sbjct: 150 SLGLSNQDYLVTSINFKQTNKLLGYIKSMMKQIIQNEPFKSLANETELGLHSDQVIMKAN 209 Query: 179 DSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGF 238 ++ + A+S ++G+ D + I DE T + +VSG PN + I+TA Sbjct: 210 NNVLRAISAESGQY-DSFHFTTAIFDEIGEIETRDAVSKIVSGQVKVPNRQFIQISTAYP 268 Query: 239 NLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEE 298 N S P +R + + + + ++ + + + Y +V D +E+ PE W K+NP+L +E Sbjct: 269 NPSVP-FREDQRIMQQAMEDDDSRDADTYLCLVWSQDNLEEVFKPETWAKSNPLLDLEQE 327 Query: 299 GQSFLKGEL--QSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKG 356 ++ +KG + + + + + +F KNMN W+ N ++D++ +N + + +G Sbjct: 328 RENLMKGLMDKRDSDLLSGNIADFQVKNMNCWLLADSNSFLDLKDIENA--VIPEFDRRG 385 Query: 357 LECTVGVDLSAKIDLTSISFEFK-----KDDKYIVLSHSFMP---EDTLAEKRQTDKVPY 408 VG+D S D T+I F + K+ V HSF+P +L K + D V Y Sbjct: 386 KRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGSLEAKMEQDGVNY 445 Query: 409 DLWVQQKW--ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAE- 465 + + IT+ P +++ E + + +D+ + D + ++ +E+ Sbjct: 446 RDLEAKGFCTITSHPQGLINPEEVYRWFVDYVEDNALDVVFFGYDAMMINKIIKALESNT 505 Query: 466 GYTMIEIRQGMATLSGPTKDFREQVYLK-KVIHNNNPVLNWATSNAITKQDANENIMLDK 524 ++ IRQ + L PTK F + ++++ + ++ ++ A NA+ K+D N I +DK Sbjct: 506 SLPLMPIRQRTSELKDPTK-FLQTLFIEGNITRLDDEIMRKALINAVIKED-NIGIQVDK 563 Query: 525 SKATERIDPIAAVINSHVRCM 545 K+T +ID + A+I++ M Sbjct: 564 MKSTYKIDVVDALIDAFYDGM 584 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 164 bits (414), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 152/565 (26%), Positives = 267/565 (47%), Gaps = 38/565 (6%) Query: 6 MMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWM-SLFKH 64 +M+Y ++ G VAC++ QA KRF +D+E Y F +A ++ + F H Sbjct: 10 VMEYAKSIVDGRKVACRELIQAAKRFFKDLENP-----KYDFNPREAEFVIQIIEKTFVH 64 Query: 65 TKG-KLAGQ--RIEPHSI---QIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLA 118 +G +L G R EP + Q F+ N+ G+ + T +RRFK+A+ + RKN K++ +A Sbjct: 65 DQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIA 124 Query: 119 CVGSYEAMAFGENMSEVYVGATKTEQSK-----IVWNEIKAQMNGCEDLKEKFNIAYGKI 173 + A+ ++ S++Y+ + +QS I++N QM ++ + N I Sbjct: 125 ALAWALALLERQSGSKIYITSAALQQSLQSFEFILFN--LRQMGEEQNFRILNNNQENSI 182 Query: 174 EHLKTDS--FISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMM 231 +D +I AL+ + K D LN GI DE HA+ T + Y+++ A N LM+ Sbjct: 183 SGEFSDGSIYIRALAANPDKQ-DSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMI 241 Query: 232 IITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDD----EITNPEVWE 287 ITTAG +++ CY+ QY KILD + +E YFV + + D+D+ + TNP E Sbjct: 242 GITTAGDDMTSFCYQ-RLQYCKKILDET--VTDEAYFVFICKADEDENGEVDYTNPIEHE 298 Query: 288 KANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVD-MKENGYMDMQKWKNCK 346 KANP + LQ+ D P++ ++FL K++N + MK Y ++ ++K Sbjct: 299 KANPNYGVTIRPDDIMNDALQAQND-PQQRKDFLAKSLNIYTSPMK--AYFNIDEFKKSD 355 Query: 347 E----TVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQ 402 T+E G++ G DLS DLT+ + + I ++H++ P K + Sbjct: 356 RKYDWTIEQLAKLGIDWFGGADLSKLHDLTAAALYGNYNGVDIAITHAWFPIVAATRKAE 415 Query: 403 TDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDM 462 D +P W W+T T V++ + M + FKIK++ D +F M Sbjct: 416 EDNIPLFGWRDDGWLTMTNTPTVNFSDVVKWFETM-RAKGFKIKQVGFDRKFGREFFMAM 474 Query: 463 EAEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIML 522 + + + +++ Q S + +QV K + ++ + N + ++ I Sbjct: 475 KQKRFNIVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYCVQNVHAIEKTDDMIQF 534 Query: 523 DKSKATERIDPIAAVINSHVRCMLN 547 +K + RID A + + +R + N Sbjct: 535 EKIEDKHRIDIFDATVFAAIRMLEN 559 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 164 bits (414), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 152/565 (26%), Positives = 267/565 (47%), Gaps = 38/565 (6%) Query: 6 MMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWM-SLFKH 64 +M+Y ++ G VAC++ QA KRF +D+E Y F +A ++ + F H Sbjct: 10 VMEYAKSIVDGRKVACRELIQAAKRFFKDLENP-----KYDFNPREAEFVIQIIEKTFVH 64 Query: 65 TKG-KLAGQ--RIEPHSI---QIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLA 118 +G +L G R EP + Q F+ N+ G+ + T +RRFK+A+ + RKN K++ +A Sbjct: 65 DQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKTRLIA 124 Query: 119 CVGSYEAMAFGENMSEVYVGATKTEQSK-----IVWNEIKAQMNGCEDLKEKFNIAYGKI 173 + A+ ++ S++Y+ + +QS I++N QM ++ + N I Sbjct: 125 ALAWALALLERQSGSKIYITSAALQQSLQSFEFILFN--LRQMGEEQNFRILNNNQENSI 182 Query: 174 EHLKTDS--FISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMM 231 +D +I AL+ + K D LN GI DE HA+ T + Y+++ A N LM+ Sbjct: 183 SGEFSDGSIYIRALAANPDKQ-DSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMI 241 Query: 232 IITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDD----EITNPEVWE 287 ITTAG +++ CY+ QY KILD + +E YFV + + D+D+ + TNP E Sbjct: 242 GITTAGDDMTSFCYQ-RLQYCKKILDET--VTDEAYFVFICKADEDENGEVDYTNPIEHE 298 Query: 288 KANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVD-MKENGYMDMQKWKNCK 346 KANP + LQ+ D P++ ++FL K++N + MK Y ++ ++K Sbjct: 299 KANPNYGVTIRPDDIMNDALQAQND-PQQRKDFLAKSLNIYTSPMK--AYFNIDEFKKSD 355 Query: 347 E----TVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQ 402 T+E G++ G DLS DLT+ + + I ++H++ P K + Sbjct: 356 RKYDWTIEQLAKLGIDWFGGADLSKLHDLTAAALYGNYNGVDIAITHAWFPIVAATRKAE 415 Query: 403 TDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDM 462 D +P W W+T T V++ + M + FKIK++ D +F M Sbjct: 416 EDNIPLFGWRDDGWLTMTNTPTVNFSDVVKWFETM-RAKGFKIKQVGFDRKFGREFFMAM 474 Query: 463 EAEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIML 522 + + + +++ Q S + +QV K + ++ + N + ++ I Sbjct: 475 KQKRFNIVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYCVQNVHAIEKTDDMIQF 534 Query: 523 DKSKATERIDPIAAVINSHVRCMLN 547 +K + RID A + + +R + N Sbjct: 535 EKIEDKHRIDIFDATVFAAIRMLEN 559 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 157 bits (397), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 146/570 (25%), Positives = 269/570 (47%), Gaps = 34/570 (5%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y VL+G +A K K A R L D+ R+G DFPY + ++A R L++ + + Sbjct: 34 YAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICPNVD-- 91 Query: 69 LAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAM-- 126 G+ + Q F F+ ++GW ++ +RF + V R K+ +A + Y + Sbjct: 92 -TGEPTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAILVCYSFLIE 149 Query: 127 AFGENMSEVYVGATKTEQSKIVWNEIKAQMNG---CEDLKEKFN-----IAYGKIEHLKT 178 + G + + V + +Q+ ++ + + M E K N I +I K Sbjct: 150 SVGLSNQDYLVASINFKQTMKLFGYVASMMRKIIQIEPFKSYANEVNLYIQSDQIIMKKN 209 Query: 179 DSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGF 238 ++ + A+S +AG+ D + + I DE + E ++SG N + I+T+ Sbjct: 210 NNVLRAISLEAGQY-DSYHFRTAIFDEIGEVKSRETVSKIISGQVKVSNHQFIQISTSYP 268 Query: 239 NLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEE 298 + + P + + + + + ++ + + + Y ++ D DE PE W K+NP+L ++ Sbjct: 269 DPTVPFHE-DQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPETWVKSNPLLDLPDQ 327 Query: 299 GQSFLKGELQSALD---VPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELS-EL 354 + LKG L D + + +F TKN+N W+ + Y+++ K+ ++ V + Sbjct: 328 RDNLLKG-LTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNL---KDVEDAVYNDFNI 383 Query: 355 KGLECTVGVDLSAKIDLTSISFEFKKDD-KYIVLSHSFMP---EDTLAEKRQTDKVPYDL 410 G E +G D S D T++SF + DD K+ + HSF+P ++ K + D + Y Sbjct: 384 DGHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIEQHSFIPFQQAGSIEAKEKQDGITYRN 443 Query: 411 WVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEA----EG 466 + + IT P +++ E I + N + H+ K+K D + + Q E+ Sbjct: 444 YPEYCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGSYQVKNITESLNVNTD 503 Query: 467 YTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSK 526 + +++I+Q + L+ PTK +E KV N+PV+ A NA+ K D I +DK K Sbjct: 504 WYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAVIKAD-KIGIHVDKDK 562 Query: 527 ATERIDPIAAVINSHVRCMLNSGE-VDLNS 555 AT +ID + A+I++ + M E DLN+ Sbjct: 563 ATLQIDVVDAIIDALYQAMYYFDENSDLNN 592 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 153 bits (387), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 139/524 (26%), Positives = 244/524 (46%), Gaps = 38/524 (7%) Query: 47 FKEEKALRFLKWM-SLFKHTKGKLAGQRIEPHSIQIFVFSNIYGWVHRN---TGLRRFKK 102 F ++A L ++ S +H KG LAGQ +E ++FVF+N+YGW H+N +R ++ Sbjct: 46 FDVDRANEMLDFVQSFIRHVKGPLAGQLMELELWEMFVFANMYGWYHKNEKGKTVRVIRE 105 Query: 103 AYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDL 162 +Y QV +KN K+ A Y E ++ Y A+ EQ++ I + E L Sbjct: 106 SYVQVPKKNGKTIIAAGALLYAMYGELELGADCYCAASDYEQAQNAAEPIAQAIENSEPL 165 Query: 163 KEKFNIAYG------------KIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHP 210 I G I + + L+K+ K +G N + DE HA Sbjct: 166 ARHTQIYKGVNGTVSGAMYRYSINGIAYQNKFKVLTKNT-KGLEGKNPYFVLNDELHAQE 224 Query: 211 TSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVM 270 ++YD L S +R P+M+ I+TAG S RV Y+Y +L+ + D + FV Sbjct: 225 NMDMYDNLKSAQISREQPMMLNISTAGKGASSVGMRV-YKYAKLVLENDDD---DSLFVA 280 Query: 271 VNELDKDDEITNPEVWEKANP---ILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNR 327 + E +K+ + + +VW+ NP + + E+ + K QSA E FL+K++N Sbjct: 281 IWEPNKNYDWEDRKVWKMVNPNIGVSVTMEQLEIEFKKAKQSAHSKAE----FLSKHLNV 336 Query: 328 WVDMKENGYMDMQKWKNCKETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDK---- 383 +V+ +N Y + + ++ +L +L G C +G+DLS DLT +S F D Sbjct: 337 FVNGADN-YFEHDQVQHVL-VKDLGDLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRS 394 Query: 384 -YIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHK 442 V F+P + + K + D VPY V++ + T G ++D + I +I +E Sbjct: 395 IIKVKQMYFLPNENIDFKEKEDNVPYTDMVERGFATFCDGKMIDQDQIMEYI--VECMDL 452 Query: 443 FKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPV 502 + +++I DP + + ++ +E G I + Q ++ D +Y K++I +NP+ Sbjct: 453 YDVQQINYDPAMSQKLIEKLENLGLECIAVNQYPNVMNAMLDDSEILIYEKRLI-TDNPL 511 Query: 503 LNWATSNAITKQDANENIMLDKSKATERIDPIAAVINSHVRCML 546 + N + + N K ++ ++ID A + +H M+ Sbjct: 512 FVYCALNVVVVTNINGMKAPSKRQSKKKIDGFVAFLCAHKETMM 555 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 145 bits (365), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 141/565 (24%), Positives = 263/565 (46%), Gaps = 42/565 (7%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y DVL + + AC R L+D++R G+EDFP+ ++ + R +K+ + + Sbjct: 44 YAFDVLDEKYTTGYLMQLACFRHLQDLKRIGNEDFPFNYEVKHVKRLMKFSKMAPNV--- 100 Query: 69 LAGQRIEPHSI---QIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEA 125 +EP + Q F+ S + GW ++ G +RF +A VGR K+ LA + +Y Sbjct: 101 ---DTMEPTKLMEWQKFMLSLLIGWRNKEGG-KRFSRAIISVGRGQGKTYMLAILMAYSF 156 Query: 126 MAFGENMS--EVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTD---- 179 +S + V + +Q+ ++ +K+ +N + NIA L+ D Sbjct: 157 FVESRGLSNQDFLVSSINAKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQADKIIM 216 Query: 180 ----SFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 235 + I +S +AG+ D + I DE + E +VSG PN + I+T Sbjct: 217 RNHNNVIRPISHEAGQY-DSYHFTTAIFDEIGEVKSREKISKIVSGQVKVPNRQFVQIST 275 Query: 236 AGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCS 295 A + + P + E + + + ++ + + + Y ++ D DE PE W K+NP+L Sbjct: 276 AYPDPTVPFHEDE-KMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPETWVKSNPLLDL 334 Query: 296 YEEGQSFLKGELQSALD--VPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSE 353 E + ++G L + + + +F KN+N W+ + Y+++ + K V Sbjct: 335 ASEHDNLMQGLLDKRDNDVLTGAVHDFQCKNLNMWLSSDIDSYLNLADVE--KAIVPEFN 392 Query: 354 LKGLECTVGVDLSAKIDLTSISFEF-----KKDDKYIVLSHSFMP---EDTLAEKRQTDK 405 + G C VGVD S D T+++F + + K+ V HSF+P ++ K + D Sbjct: 393 IYGQRCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHVEQHSFIPFQAAGSIEAKEKQDG 452 Query: 406 VPYDLWVQQKWITTTP---GAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQD- 461 + Y + + T T G + D EF + I N +++ + D T+ +Q Sbjct: 453 INYRELETKGFCTITSHQQGLINDDEFYE-WIVNYIEENSLDVLFFGYDAMGVTKVIQML 511 Query: 462 MEAEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHN-NNPVLNWATSNAITKQDANENI 520 + G+ + IRQ L+ PTK F ++++++ I ++ ++ A NA+ ++D+ I Sbjct: 512 LNNTGFNLQPIRQRTGELAKPTK-FLQKIFVEGTISRLDDKIMEKALLNAVLREDS-VGI 569 Query: 521 MLDKSKATERIDPIAAVINSHVRCM 545 +DK KAT +ID + A+I++ + M Sbjct: 570 QVDKRKATLKIDVVDAIIDALYQGM 594 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 134 bits (336), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 145/569 (25%), Positives = 261/569 (45%), Gaps = 47/569 (8%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y VL G + K A R LRD++R G EDFPY + +++ LK S+ + Sbjct: 52 YAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD-- 109 Query: 69 LAGQRIEPHSIQIFVFSNIYGWVHRNT-GLRRFKKAYWQVGRKNAKSQSLACVGSYEAM- 126 G+ E Q F+ + GW RN+ G +RF A V R K+ LA + Y + Sbjct: 110 -TGEPTELMPWQKFIMCMLIGW--RNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLF 166 Query: 127 -AFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAY-----------GKIE 174 + G + + V + +Q+ ++ +K + ++ IA ++ Sbjct: 167 ESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVV 226 Query: 175 HLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIIT 234 K ++ I A+S +AG+ D + I DE E +VSG N + I+ Sbjct: 227 MKKMNNKIRAISHEAGQY-DSFHFTTAIFDEIGEVTNREKISKIVSGQVLVKNHQFVQIS 285 Query: 235 TAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILC 294 T+ + S P +R + + + + ++ + D E + +V D E PE W K+NP+L Sbjct: 286 TSYPDPSVP-FRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLE 344 Query: 295 SYEEGQSFLKGEL--QSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELS 352 ++ LKG + +++ + + +F TKN+N W+ + Y+++ + K + Sbjct: 345 LEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVE--KAIIPEF 402 Query: 353 ELKGLECTVGVDLSAKIDLTSISFEFKKDD-----KYIVLSHSFMP---EDTLAEKRQTD 404 + G C +G+D S D T+I+F F D K+ V HSF+P ++ K + D Sbjct: 403 SIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQD 462 Query: 405 KVPYDLWVQQKWITTTP---GAVVD---YEFIKTHIRNMEKDHKFKIKEICADPWNATQF 458 + Y + + T T G + D YE+I +I +D+ + D T+ Sbjct: 463 GINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYI----EDNALDVIFFGYDAMGITKV 518 Query: 459 MQD-MEAEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHN-NNPVLNWATSNAITKQDA 516 +Q M GY + IRQ + L PTK F ++++++ I ++ ++ + NA+ ++D+ Sbjct: 519 IQMLMNNTGYNLQPIRQRTSELKDPTK-FLQKLFVEGSISRLDDKIMEKSLLNAVLREDS 577 Query: 517 NENIMLDKSKATERIDPIAAVINSHVRCM 545 I +DK KAT +ID + A+I++ + M Sbjct: 578 I-GIQVDKRKATLKIDVVDAIIDALFQGM 605 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 133 bits (335), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 145/569 (25%), Positives = 261/569 (45%), Gaps = 47/569 (8%) Query: 9 YCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGK 68 Y VL G + K A R LRD++R G EDFPY + +++ LK S+ + Sbjct: 55 YAFAVLDGITKSGYLTKLAAFRHLRDLQRIGREDFPYRYSKKEIKNLLKVASVVPNVD-- 112 Query: 69 LAGQRIEPHSIQIFVFSNIYGWVHRNT-GLRRFKKAYWQVGRKNAKSQSLACVGSYEAM- 126 G+ E Q F+ + GW RN+ G +RF A V R K+ LA + Y + Sbjct: 113 -TGEPTELMPWQKFIMCMLIGW--RNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLF 169 Query: 127 -AFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAY-----------GKIE 174 + G + + V + +Q+ ++ +K + ++ IA ++ Sbjct: 170 ESLGLSNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILNDEVV 229 Query: 175 HLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIIT 234 K ++ I A+S +AG+ D + I DE E +VSG N + I+ Sbjct: 230 MKKMNNKIRAISHEAGQY-DSFHFTTAIFDEIGEVTNREKISKIVSGQVMVENHQFVQIS 288 Query: 235 TAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILC 294 T+ + S P +R + + + + ++ + D E + +V D E PE W K+NP+L Sbjct: 289 TSYPDPSVP-FRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPLLE 347 Query: 295 SYEEGQSFLKGEL--QSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELS 352 ++ LKG + +++ + + +F TKN+N W+ + Y+++ + K + Sbjct: 348 LEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVE--KAIIPEF 405 Query: 353 ELKGLECTVGVDLSAKIDLTSISFEFKKDD-----KYIVLSHSFMP---EDTLAEKRQTD 404 + G C +G+D S D T+I+F F D K+ V HSF+P ++ K + D Sbjct: 406 SIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDAKEKQD 465 Query: 405 KVPYDLWVQQKWITTTP---GAVVD---YEFIKTHIRNMEKDHKFKIKEICADPWNATQF 458 + Y + + T T G + D YE+I +I +D+ + D T+ Sbjct: 466 GINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYI----EDNALDVIFFGYDAMGITKV 521 Query: 459 MQD-MEAEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHN-NNPVLNWATSNAITKQDA 516 +Q M GY + IRQ + L PTK F ++++++ I ++ ++ + NA+ ++D+ Sbjct: 522 IQMLMNNTGYNLQPIRQRTSELKDPTK-FLQKLFVEGSISRLDDKIMEKSLLNAVLREDS 580 Query: 517 NENIMLDKSKATERIDPIAAVINSHVRCM 545 I +DK KAT +ID + A+I++ + M Sbjct: 581 I-GIQVDKRKATLKIDVVDAIIDALFQGM 608 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 130 bits (326), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 121/461 (26%), Positives = 212/461 (45%), Gaps = 26/461 (5%) Query: 98 RRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMN 157 RR++ A+ ++ RKN K++ LA + Y +A GE E+Y A +Q+ + ++ + Sbjct: 77 RRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVK 136 Query: 158 GCEDLKEKFNIA-YGK-IEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIY 215 L ++ + Y K I KT+SF ++ DA KS G N DE A ++ Sbjct: 137 FSPILSKRLKVVDYKKRIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMW 195 Query: 216 DVLVS--GSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNE 273 D L + GSGAR PLM+ TTAG N + ++++ + ++++ + + + FV + Sbjct: 196 DSLRTGMGSGARVQPLMVASTTAG-NDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRN 254 Query: 274 LDKDDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKE 333 +++ N E W ANP L + ++ ++ + A + P F +N+W + Sbjct: 255 TPMEEDPWNEECWPHANPALGRFLSWEA-MRKQAAEARNNPIAEMAFRQFKLNQWQNSTI 313 Query: 334 NGYMDMQKWKNCKETVELSE------LKGLECTVGVDLSAKIDLTSISFEFKKDDKYI-V 386 +M M W CK TV S G C G+DL+A+ DL SI + F + D + + Sbjct: 314 R-WMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDL 372 Query: 387 LSHSFMPEDTLAE-KRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKI 445 L ++PE LA+ R D +V W+ T G V+D++ + I K +F I Sbjct: 373 LWRHWIPESALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADSK--RFTI 430 Query: 446 KEICADPWNATQFMQDMEAEGYTMIEI---RQGMATLSGPTKDFREQVYLKKVIHNNNPV 502 AD W++ +Q++E Y +I + A +S E K + H+ NP+ Sbjct: 431 LGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPL 490 Query: 503 LNWATSNAITKQDANENIML-----DKSKATERIDPIAAVI 538 + S + A + ++ D+ A +RID + + Sbjct: 491 ARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAV 531 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 119 bits (299), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 127/575 (22%), Positives = 248/575 (43%), Gaps = 56/575 (9%) Query: 9 YCDDVLHGEVVACQKHKQ-ACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKG 67 Y DV+ + + Q AC R L D+ R G++DFPY + + + L + Sbjct: 38 YAYDVMFTDKYMTGRDVQLACIRHLNDLLRIGNDDFPYQYSSDMVNAIEYFSRLLPNPDD 97 Query: 68 KLAGQRIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKS--QSLACVGSYEA 125 ++I+P Q F+ ++ GW + G R F + + R+ K+ S+ Y Sbjct: 98 --TSKKIQPFKWQSFILDSLIGWRTVDNGTR-FTTSNISIARQQGKTWLASILINFYYFV 154 Query: 126 MAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISAL 185 + + ++ V + +E + ++N++ Q L E + A + +T I+ Sbjct: 155 VCWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLPEFADDARERGVEAQTTQVIAKN 214 Query: 186 SKDAGKSGDGLNVQCGIIDEYH-----------AHPT-SEIYDVLVSGSGARPNPLMMII 233 +K+ + G Q G D +H P +E + SG N + + I Sbjct: 215 TKNTIRKGTS---QGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKI 271 Query: 234 TTAGFNLSHPCYRVEYQYVSKILDPNID----IENEEYFVMVNELDKDDEITNPEVWEKA 289 +TA +P +V+++ + I+ + + F ++ D +DE+ PE W K+ Sbjct: 272 STA-----YPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVFEPETWAKS 326 Query: 290 NPILCSYEEGQSFLKGELQSALDVPEK-------MRNFLTKNMNRWVDMKENGYMDMQKW 342 NP L + + + LQ+AL+ + F+ K++N W +N Y+ + Sbjct: 327 NPNLLELPKSK---RDNLQNALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDNI 383 Query: 343 KNCKETVELSELKGLECTVGVDLSAKIDLTSISF--EFKKDDKYI--VLSHSFMP---ED 395 + + ++ ++ G + +G D S D TS F + DK++ V HSF+P Sbjct: 384 Q--RSIIDRFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFAQAK 441 Query: 396 TLAEKRQTDKVPYDLWVQQKW---ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADP 452 T+ K + D + Y L +Q + IT V++ + + + + H+ K+K I ADP Sbjct: 442 TIEAKSKQDGLDY-LKLQDEGFVDITNLASGVINTDQVYQWLVDYVNQHRLKVKFIIADP 500 Query: 453 WNATQFMQDME--AEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNA 510 + + +E + + L+ PTKDF+ + N+P+L +NA Sbjct: 501 NHGEWLEKKLEHYQPQWQWFPLPPTSFKLNEPTKDFQNLFINGNISMLNDPLLIDGLNNA 560 Query: 511 ITKQDANENIMLDK-SKATERIDPIAAVINSHVRC 544 + +D ++ +D+ ++ ++ ID A+IN+H + Sbjct: 561 VLVEDRGGSVKIDRQNRTSDHIDTTDALINAHAQA 595 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 119 bits (298), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 123/556 (22%), Positives = 241/556 (43%), Gaps = 55/556 (9%) Query: 27 ACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGKLAGQRIEPHSIQIFVFSN 86 AC R L D+ R G++DFPY + + + L + ++I+P Q F+ + Sbjct: 56 ACIRHLNDLLRIGNDDFPYQYNSDMVNAIEYFSRLLPNPDD--TSKKIQPFKWQSFILDS 113 Query: 87 IYGWVHRNTGLRRFKKAYWQVGRKNAKS--QSLACVGSYEAMAFGENMSEVYVGATKTEQ 144 + GW + G R F + + R+ K+ S+ Y + + ++ V + +E Sbjct: 114 LIGWRTIDNGTR-FTTSNISIARQQGKTWLASILINFYYFVVCWNATSQDLLVASYDSEH 172 Query: 145 SKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSKDAGKSGDGLNVQCGIID 204 + ++N++ Q L + + A + +T I+ +K+ + G Q G D Sbjct: 173 ATKLFNDVSLQAKTILSLPDFADDARERGVEAQTTQVIAKNTKNTIRKGTS---QGGGFD 229 Query: 205 EYH-----------AHPT-SEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYV 252 +H P +E + SG N + + I+TA +P +V+++ Sbjct: 230 SFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVKISTA-----YPDIKVKFKND 284 Query: 253 SKILDPNID----IENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLKGELQ 308 + I+ + + F ++ D +DE+ PE W K+NP L ++ + + LQ Sbjct: 285 EDVTRAAIEHDAVRDADNVFQVIYAQDSEDEVFEPETWAKSNPNLLELQKSK---RDNLQ 341 Query: 309 SALDVPEK-------MRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTV 361 AL+ + F+ K++N W +N Y+ + + + ++ ++ G + + Sbjct: 342 KALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDNIQ--RSIIDHFDVNGRDVFI 399 Query: 362 GVDLSAKIDLTSISF--EFKKDDKYI--VLSHSFMP---EDTLAEKRQTDKVPYDLWVQQ 414 G D S D TS F + DK++ V HSF+P T+ K + D + Y L +Q Sbjct: 400 GFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSFIPFAQAKTIEAKSKQDGLDY-LKLQD 458 Query: 415 KW---ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDME--AEGYTM 469 + IT V++ E + + + H+ K+K I ADP + + +E + Sbjct: 459 EGFVDITNLASGVINTEQVYQWLVDYVNQHRLKVKFIIADPNHGEWLEKKLEHYQPQWQW 518 Query: 470 IEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDK-SKAT 528 + L+ PTKDF+ + N+P+L +NA+ +D ++ +D+ ++ + Sbjct: 519 FPLPPTSFKLNEPTKDFQNLFINGNITMLNDPLLIDGLNNAVLVEDRGGSVKIDRQNRTS 578 Query: 529 ERIDPIAAVINSHVRC 544 + ID A+IN+H + Sbjct: 579 DHIDTTDALINAHAQA 594 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 114 bits (284), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 115/445 (25%), Positives = 199/445 (44%), Gaps = 26/445 (5%) Query: 114 SQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIA-YGK 172 ++ LA + Y +A GE E+Y A +Q+ + ++ + L ++ + Y K Sbjct: 424 TELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKK 483 Query: 173 -IEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSG--SGARPNPL 229 I KT+SF ++ DA KS G N DE A ++D L +G SGAR PL Sbjct: 484 RIYDAKTNSFYDVIAADA-KSALGSNPSGCGADEILAWQDGGMWDSLRTGMGSGARVQPL 542 Query: 230 MMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKA 289 M+ TTAG N + ++++ + ++++ + + + FV + +++ N E W A Sbjct: 543 MVASTTAG-NDTEGFAGLKHREMERVMEDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHA 601 Query: 290 NPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETV 349 NP L + ++ K + A + P F +N+W + +M M W CK TV Sbjct: 602 NPALGRFLSWEAMRK-QAAEARNNPIAEMAFRQFKLNQWQNSTIR-WMRMPAWDECKGTV 659 Query: 350 ELSE------LKGLECTVGVDLSAKIDLTSISFEFKKDDKYI-VLSHSFMPEDTLAE-KR 401 S G C G+DL+A+ DL SI + F + D + +L ++PE LA+ R Sbjct: 660 FKSNKDLFDAFAGQSCWFGLDLAARRDLCSICYLFPQSDGSVDLLWRHWIPESALAKLDR 719 Query: 402 QTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQD 461 D +V W+ T G V+D++ + I K +F I AD W++ +Q+ Sbjct: 720 LNDGRFAKEFVPGGWLKVTEGDVLDFDVVYDDIEADAK--RFTILGGDADQWSSDPVIQE 777 Query: 462 MEAEGYTMIEI---RQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANE 518 +E Y +I + A +S E K + H+ NP+ + S + A + Sbjct: 778 IEKRTYLYEDIFAYKNDFAHMSDSMHRIFEWTLAKNLRHHGNPLARFCFSACEARVAAYD 837 Query: 519 NIML-----DKSKATERIDPIAAVI 538 ++ D+ A +RID + + Sbjct: 838 PNLIRPDKPDRDMAAKRIDAVPTAV 862 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 108 bits (270), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 111/462 (24%), Positives = 196/462 (42%), Gaps = 37/462 (8%) Query: 100 FKKAYWQVGRKNAKSQSLACVGSYEAMAF-GENMSEVYVGATKTEQSKIVWNEIKAQMNG 158 +++ + +GR K+ ++ + +Y G N +V V A +Q+K+ + E+ ++G Sbjct: 86 YEEFFITLGRGGGKNGFISTLSNYFISPLHGINNYDVSVVANSEDQAKVSFKEVFNTIDG 145 Query: 159 CEDLKEKFNIAYGKIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVL 218 L+ F+ +I T+S + +A K+ DG C I DE H + +I DV Sbjct: 146 NPKLEGSFDAWKAQIIGKATNSVFKFQTSNA-KTKDGGREGCVIYDETHEYEDRQIIDVF 204 Query: 219 VSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDD 278 G G NP I T GF + ++E + + + N+ N+ F + +LD Sbjct: 205 SGGLGKVANPREFFIGTNGFVRAGFYDKLEERSKAILSGENL---NDRMFPFICKLDDPA 261 Query: 279 EITNPEVWEKANPILCSYEEGQS-----FLKGELQSALDVPEKMRNFLTKNMNRWVDMKE 333 E+ N +WEKANP +S ++ + ++ + P F+TK MN + E Sbjct: 262 EVKNEAMWEKANPAFEKPLSPRSKRLLNKVRKQYEALTNNPSGREAFMTKRMN----LPE 317 Query: 334 NGYMDMQK----WKNCKET-VELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLS 388 +D++K W++ T E+ EL+ C D ++ D ++ F+ D YI + Sbjct: 318 ---VDLEKVVAPWEDILATNREMPELQNRACIGAFDYASVKDFAAVGLLFRVGDDYIWKT 374 Query: 389 HSFMPEDTLAEKRQTD----KVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFK 444 HSF A K D K P W +Q +T +D + M + H Sbjct: 375 HSF------ARKGYLDIANLKPPIKEWEKQGLLTIVDEPTIDPRHVVNWFVEMRETH--G 426 Query: 445 IKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLN 504 I+++ D + EAEG+ + IR A S +++ +NP++ Sbjct: 427 IQKVIGDNFRMDLMRPLFEAEGFELEIIRNPRAAHSLLAPRIETLFANHRIVFGDNPLMR 486 Query: 505 WATSNAIT--KQDANENIMLDKSKATERIDPIAAVINSHVRC 544 W T+N K D N+ L K + + D A +++ R Sbjct: 487 WYTNNVAVKIKPDGNKE-YLKKDEHRRKTDGFQAFVHALWRA 527 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 107 bits (268), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 141/584 (24%), Positives = 252/584 (43%), Gaps = 54/584 (9%) Query: 7 MDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALRFLKWMSLFKHTK 66 + + DV+ G +A + KQA +RFL D+E + + FK +F + L + T Sbjct: 11 IQWSKDVISGNTLANIEQKQAAQRFLDDLESD-----KWDFKHH---QFDFVIGLIEGTI 62 Query: 67 GKLAGQRIEPHSI----------QIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQS 116 + G+ E S Q FV N++G+ + T +RRF +A + RK K+ Sbjct: 63 VHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF 122 Query: 117 LACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEHL 176 A + + + + S+ Y+ A +Q++ + + + + +K I EH Sbjct: 123 AASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHS 182 Query: 177 KTDSF------ISALSKDAGKSGDGLNVQCGIIDEYHA--HPTSEIYDVLVSGSGARPNP 228 F I A++ K D LN I+DE H+ ++ Y ++ + A N Sbjct: 183 VHVDFGDGYCDIFAIANQDDKL-DSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNK 241 Query: 229 LMMIITTAGFNLSHPCYRVEYQYVSKILDPNI-DIENEEYFVMVNELDKDDE-------- 279 L+M I+TAG ++++ + K+L I D + YF+ + ++D++ Sbjct: 242 LLMGISTAG-DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVT 300 Query: 280 -----ITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKEN 334 I +PEV P L + E + AL P+ FL K++N + + + Sbjct: 301 REITTIDDPEVLASVTPSLDVTVTLDDLIT-EARQALLEPQLKAEFLNKSLNIFTNSMD- 358 Query: 335 GYMDMQKWK--NCKETVELSELKGLECT--VGVDLSAKIDLTSIS----FEFKKDDKYIV 386 Y D+ +++ N + + + EL L T G DLS DLT+ + +E+K IV Sbjct: 359 AYFDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIV 418 Query: 387 LSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIK 446 ++H+F P+ EK Q D +P W ++ W T + V Y+ I M +D FKIK Sbjct: 419 ITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEM-RDKGFKIK 477 Query: 447 EICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWA 506 + D +F M+ + + M++ Q S + + K++ + NN + Sbjct: 478 SVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYC 537 Query: 507 TSNAITKQDANENIMLDKSKATERIDPIAAVINSHVRCMLNSGE 550 +N + ++ I +K +RID A + + R ML E Sbjct: 538 VANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFAS-RGMLEEKE 580 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 102 bits (255), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 112/482 (23%), Positives = 211/482 (43%), Gaps = 32/482 (6%) Query: 80 QIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMAF-GENMSEVYVG 138 Q F+ +NI+ + +NT F + +GR K+ ++ + + + G + + Sbjct: 67 QRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISIV 125 Query: 139 ATKTEQSKIVWNEIKAQM------NGCEDLKEKFNIAYGKIEHLKTDSFISALSKDAGKS 192 A +Q+K ++EI+ + + K + ++ KI + T S I + + K+ Sbjct: 126 ANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTSNT-KT 184 Query: 193 GDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYV 252 DG C I DE H E+ +V G G + N I+T GF ++++ Sbjct: 185 KDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKIA 244 Query: 253 SKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCS--YEEGQSFLKGELQSA 310 S + + ++N F +LD E+ + + WEKANP+L E ++ L + Sbjct: 245 SVL---SGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEY 301 Query: 311 LDVPEKMRN---FLTKNMN-RWVDMKENGYMDMQKWKNCKET-VELSELKGLECTVGVDL 365 D+P N F+TK MN VD+++ + WK T E+ L C G+D Sbjct: 302 NDLPFNRSNKPEFMTKRMNLPEVDLEKV----IAPWKEILATNREIPNLDNQMCIGGLDF 357 Query: 366 SAKIDLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPGAVV 425 + D S+ F+K+D YI L HSF+ + L + + + P W + +T V+ Sbjct: 358 ANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKL--EPPIKEWEKMGLLTIVDDDVI 415 Query: 426 DYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPTKD 485 + E+I ++ K+ ++++ AD + + E G + E+ + + G Sbjct: 416 EIEYIVDWF--LKAREKYGLEKVIADNYRTDIVRRAFEDAGIKL-EVLRNPKAIHGLLAP 472 Query: 486 FREQVYLK-KVIHNNNPVLNWATSNAIT--KQDANENIMLDKSKATERIDPIAAVINSHV 542 + ++ K VI+ +NP++ W T+N K D N+ + K + + D A +++ Sbjct: 473 RIDTMFAKHNVIYGDNPLMRWFTNNVAVKIKPDGNKE-YIKKDEVRRKTDGFMAFVHALY 531 Query: 543 RC 544 R Sbjct: 532 RA 533 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 102 bits (254), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 111/482 (23%), Positives = 210/482 (43%), Gaps = 30/482 (6%) Query: 79 IQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMAF-GENMSEVYV 137 Q F+ +NI+ + +NT F + +GR K+ ++ + + + G + + Sbjct: 66 FQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 Query: 138 GATKTEQSKIVWNEIKAQM------NGCEDLKEKFNIAYGKIEHLKTDSFISALSKDAGK 191 A +Q+K ++EI+ + + K + ++ KI + T S I + + K Sbjct: 125 VANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTSNT-K 183 Query: 192 SGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQY 251 + DG C I DE H E+ +V G G + N I+T GF ++++ Sbjct: 184 TKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKI 243 Query: 252 VSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCS--YEEGQSFLKGELQS 309 S + + ++N F +LD E+ + + WEKANP+L E ++ L + Sbjct: 244 ASVL---SGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEE 300 Query: 310 ALDVPEKMRN---FLTKNMN-RWVDMKENGYMDMQKWKNCKET-VELSELKGLECTVGVD 364 D+P N F+TK MN VD+++ + WK T E+ L C G+D Sbjct: 301 YNDLPFNRSNKPEFMTKRMNLPEVDLEKV----IAPWKEILATNREIPNLDNQMCIGGLD 356 Query: 365 LSAKIDLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPGAV 424 + D S+ F+K+D YI L HSF+ + L + + + P W + +T V Sbjct: 357 FANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKL--EPPIKEWEKMGLLTIVDDDV 414 Query: 425 VDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPTK 484 ++ E+I ++ K+ ++++ AD + + E G + E+ + + G Sbjct: 415 IEIEYIVDWF--LKAREKYGLEKVIADNYRTDIVRRAFEDAGIKL-EVLRNPKAIHGLLA 471 Query: 485 DFREQVYLK-KVIHNNNPVLNWATSNAITKQDANENI-MLDKSKATERIDPIAAVINSHV 542 + ++ K VI+ +NP++ W T+N K + N + K + + D A +++ Sbjct: 472 PRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKKDENRRKTDGFMAFVHALY 531 Query: 543 RC 544 R Sbjct: 532 RA 533 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 102 bits (254), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 111/482 (23%), Positives = 210/482 (43%), Gaps = 30/482 (6%) Query: 79 IQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMAF-GENMSEVYV 137 Q F+ +NI+ + +NT F + +GR K+ ++ + + + G + + Sbjct: 66 FQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAISDFLSTPLHGVKEYHISI 124 Query: 138 GATKTEQSKIVWNEIKAQM------NGCEDLKEKFNIAYGKIEHLKTDSFISALSKDAGK 191 A +Q+K ++EI+ + + K + ++ KI + T S I + + K Sbjct: 125 VANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTSNT-K 183 Query: 192 SGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQY 251 + DG C I DE H E+ +V G G + N I+T GF ++++ Sbjct: 184 TKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDAMKHKI 243 Query: 252 VSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCS--YEEGQSFLKGELQS 309 S + + ++N F +LD E+ + + WEKANP+L E ++ L + Sbjct: 244 ASVL---SGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEE 300 Query: 310 ALDVPEKMRN---FLTKNMN-RWVDMKENGYMDMQKWKNCKET-VELSELKGLECTVGVD 364 D+P N F+TK MN VD+++ + WK T E+ L C G+D Sbjct: 301 YNDLPFNRSNKPEFMTKRMNLPEVDLEKV----IAPWKEILATNREIPNLDNQMCIGGLD 356 Query: 365 LSAKIDLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPGAV 424 + D S+ F+K+D YI L HSF+ + L + + + P W + +T V Sbjct: 357 FANIRDFASVGLLFRKNDDYIWLGHSFVRQGFLDDVKL--EPPIKEWEKMGLLTIVDDDV 414 Query: 425 VDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPTK 484 ++ E+I ++ K+ ++++ AD + + E G + E+ + + G Sbjct: 415 IEIEYIVDWF--LKAREKYGLEKVIADNYRTDIVRRAFEDAGIKL-EVLRNPKAIHGLLA 471 Query: 485 DFREQVYLK-KVIHNNNPVLNWATSNAITKQDANENI-MLDKSKATERIDPIAAVINSHV 542 + ++ K VI+ +NP++ W T+N K + N + K + + D A +++ Sbjct: 472 PRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKKDENRRKTDGFMAFVHALY 531 Query: 543 RC 544 R Sbjct: 532 RA 533 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 100 bits (249), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 121/514 (23%), Positives = 208/514 (40%), Gaps = 56/514 (10%) Query: 35 IEREGSEDFPYVFKEEKALRFLKWMSLFKHTKGKLAGQRIEPHSIQIFVFSNIYGWVHRN 94 I R D P+ + R KW+ F + G AGQ Q + + Y Sbjct: 14 IARHIPADAPF---PSEGYRVAKWIEEFCYLTGSFAGQPFRLLPWQRTLLIDAYELTQDT 70 Query: 95 TGL--RRFKKAYWQVGRKNAKSQSLACVGSYEAMA-FGENMSEVYVGATKTEQSKIVWNE 151 G R+ + V RKN KS A + Y +A G+ +V A Q+++V++ Sbjct: 71 FGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQVIAAANDRNQARMVFDS 130 Query: 152 IKAQMNGCEDLKEKFNIAYGKIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPT 211 K +N L N+ I + D+ +S DAG+ GLN +DEY + Sbjct: 131 AKQMVNASPKLAAVCNVQRDVIRY--KDNTYRVVSADAGRQ-QGLNPAAVSLDEYAFSKS 187 Query: 212 SEIYDVLVSGSGARPNPLMMIITTAGFNLSHP----CYRVEYQYVSKILDPNIDIENEEY 267 S+++D L GS AR P+ +II+TAG + P C + E + DP + Y Sbjct: 188 SDLFDALTLGSAARNQPMFLIISTAGPDPDGPFAALCEQGERVNSGEADDPTL-----FY 242 Query: 268 FVMVNELDKDDEITNPEVWEKANPILCSYE-EGQSFLKGELQSALDVPEKMRNFLTKNMN 326 +L + + +PEVW + NP SY+ K Q + + +F ++ Sbjct: 243 RSWGPKLGETVDHLDPEVWARCNP---SYDILNPDDFKAAAQRSTEA-----SFRIYRLS 294 Query: 327 RWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIV 386 ++V + ++ W + + G E G D S K D T++ +D + V Sbjct: 295 QFV-RGASTWLPHGLWDSLAADDDDPLEPGDEVVCGFDGSWKGDSTALVACRVRDLRVFV 353 Query: 387 LSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIK 446 L H P D + W P A V E + + + ++++ Sbjct: 354 LGHWEAPADDI-----------------HW--RVPMADV-REALHSAL------DTYRVR 387 Query: 447 EICADPWNATQFMQDMEAEGYTMIEI-RQGMATLSGPTKDFREQVYLKKVIHNNNPVLNW 505 + ADP+ + + ++EAEG+ + +A + T+ + ++ H+ NP L Sbjct: 388 NLVADPYRWEETLDNLEAEGFPVEAFPTNSLARMVPATQAVYDACRDGRLSHDGNPALAR 447 Query: 506 ATSNAITKQDANENIMLDKSKATER-IDPIAAVI 538 NA+ K+DA + + A+ R ID A++ Sbjct: 448 HIGNAVLKEDARGARITKEFGASRRKIDLAVAMV 481 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 97.4 bits (241), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/334 (25%), Positives = 168/334 (50%), Gaps = 19/334 (5%) Query: 226 PNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEV 285 PN + I+TA N S P +R + + + + ++ + + + + Y +V D DE+ PE Sbjct: 2 PNRQFIQISTAYPNPSVP-FREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 Query: 286 WEKANPILCSYEEGQSFLKGEL--QSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWK 343 W K+NP+L E ++ +KG + + + + + +F KNMN W+ N ++D++ + Sbjct: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 Query: 344 NCKETVELSELKGLECTVGVDLSAKIDLTSISFEFK-----KDDKYIVLSHSFMP---ED 395 N + +++G VG+D S D T+I F + K+ + HSF+P Sbjct: 121 NA--VIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAG 178 Query: 396 TLAEKRQTDKVPYDLWVQQKW--ITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPW 453 +L K + D V Y Q+ + IT+ P +++ E + + +D++ + D Sbjct: 179 SLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAM 238 Query: 454 NATQFMQDMEAE-GYTMIEIRQGMATLSGPTKDFREQVYLK-KVIHNNNPVLNWATSNAI 511 + ++ +E+ + ++ IRQ + L PTK F + ++++ + ++ ++ A NA+ Sbjct: 239 MTDKIIKSLESNTNFPLMPIRQRTSELKDPTK-FLQTLFIEGNITRLDDEIMRKALINAV 297 Query: 512 TKQDANENIMLDKSKATERIDPIAAVINSHVRCM 545 K+D N I +DK K+T +ID + A+I++ M Sbjct: 298 IKED-NIGIQVDKMKSTYKIDVVDAIIDAFYDGM 330 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 125/580 (21%), Positives = 234/580 (40%), Gaps = 93/580 (16%) Query: 4 QWMMDYCDDVLHGEVVACQKHKQACKRFLRDI--EREGSEDFPYVFKEEKALR----FL- 56 +++ +Y DD G V+ Q+ K R+I E E +F +EK ++ F+ Sbjct: 3 EYVQNYIDDFEKGRVIFNQERKDLVAYIYREIIPRIEKKE----IFFDEKNIKNCINFIE 58 Query: 57 KWMSLFKHTKGKLAGQRIEPHSIQIFVFSNI---YGWVHRNTGLRRFKKAYWQVGRKNAK 113 KW + + Q F+ S + Y +RN +KK +GR K Sbjct: 59 KWF--------------FKLENFQKFIISFVFLRYSETNRNV----YKKILIMMGRGGGK 100 Query: 114 SQSLACVGSYEAMAF-GENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGK 172 + ++ + +Y F G V + A +Q+K ++EI + LKE + + Sbjct: 101 NGLISGIIAYLISPFHGIKNYNVSLVANSEDQAKTSFDEIYNTVESNPKLKEIYYNTKSE 160 Query: 173 IEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMI 232 I+ + T+S + G + DGL + DE H + +++ V SG G N Sbjct: 161 IKSIHTNS-VMRFRTSNGNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFY 219 Query: 233 ITTAGFNLSHPCYRVEYQYVSKILDPNIDIEN-----EEYFVMVNELDKDDEITNPEVWE 287 I T G+ V ++ + D + + F + ++D++ E+ + E W+ Sbjct: 220 IGTDGY--------VREGFIDSMKDKAKKVLSGAARWNSMFPFICKIDEEHEVDDKEKWQ 271 Query: 288 KANPI----LCSY-EEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKW 342 KANP+ + Y +E + + + ++ P F+TK M+ V MD+++ Sbjct: 272 KANPMFHQPMSDYAQELFDMVCEQYEEMIEDPSNREEFMTKRMDFPV-------MDVERS 324 Query: 343 KNCKETV-----ELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFM----- 392 E + EL +++G C G+D +A D ++ FK D Y+ LSHSF+ Sbjct: 325 VASHEELVATKRELPDMRGEVCIGGLDYAAIRDFAAVGLLFKDRDDYVWLSHSFVRKEFV 384 Query: 393 --------PEDTLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFK 444 +D++ KRQ P W Q+ +T A ++ ++I M + + Sbjct: 385 DTYYGYSKRKDSINGKRQF--APIKKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYD 442 Query: 445 IKEICADPWNATQFMQDMEAEGYTMIE--------------IRQGMATLSGPTKDFREQV 490 ++ I +D + E EG+ ++ +R A S Sbjct: 443 LQRIVSDNFRMEILKPLFEREGFEVLSKNTFSAPPGYQIEIVRNPRAIDSLLAPRIETAF 502 Query: 491 YLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATER 530 +V+ +N ++ W T N + + ++ N+ K + T R Sbjct: 503 ANHRVVFGHNDMMRWYTHNVLRRLKSDGNVEYVKKEDTRR 542 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 94.7 bits (234), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 117/503 (23%), Positives = 207/503 (41%), Gaps = 55/503 (10%) Query: 54 RFLKWMSLFKHTKGKLAGQ--RIEPHSIQIFVFSNIYGWVHRNTGLRRFKKAYWQVGRKN 111 R KW+ F + G AGQ R+ P ++ + + + R+ + V RKN Sbjct: 27 RVAKWIEEFCYLTGSFAGQPFRLLPWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKN 86 Query: 112 AKSQSLACVGSYEAMA-FGENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAY 170 KS A + Y +A G+ ++ A Q+++V++ K +N L ++ Sbjct: 87 GKSTIAAAIMLYHLIADRGDAQRQIIAAANDRNQARMVFDSAKQMVNASPKLAAVCDVQR 146 Query: 171 GKIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLM 230 I + D+ +S DAG+ GLN +DEY S+++D L GS AR P+ Sbjct: 147 DVIRY--KDNTYRVVSADAGRQ-QGLNPAAVSLDEYAFSKHSDLFDALTLGSAARNQPMF 203 Query: 231 MIITTAGFNLSHP----CYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVW 286 +II+TAG + P C + E + DP + Y +L + + +P+VW Sbjct: 204 LIISTAGPDPDGPFAALCEQGERVNSGEADDPTL-----FYRSWGPKLGETVDHLDPDVW 258 Query: 287 EKANPILCSYE-EGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNC 345 NP SY+ K Q + + +F ++++V + ++ W + Sbjct: 259 RACNP---SYDILNPDDFKAAAQRSTEA-----SFRIYRLSQFV-RGASTWLPHGLWDSL 309 Query: 346 KETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQTDK 405 + E G E +G D S K D T++ +D K VL H P D Sbjct: 310 AADDDPLE-PGDEVVLGFDGSWKGDSTALVACRIRDLKVFVLGHWEAPAD---------- 358 Query: 406 VPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAE 465 W P A V E + T + ++++ + ADP+ + + ++EA+ Sbjct: 359 -------DAHW--RVPMADVREE-LHTAL------DVYRVRNLVADPYRWEETLDNLEAD 402 Query: 466 GYTMIEI-RQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDA-NENIMLD 523 G+ + +A + T+ + ++ H+ NP L NA+ K+DA I + Sbjct: 403 GFPVEAFPTNSLARMVPATQAVYDACRDGRLSHDGNPALGRHIGNAVLKEDARGARITKE 462 Query: 524 KSKATERID-PIAAVINSHVRCM 545 + + +ID +A V+ H M Sbjct: 463 HASSRRKIDLAVAMVLAVHGAVM 485 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 94.0 bits (232), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 128/575 (22%), Positives = 229/575 (39%), Gaps = 85/575 (14%) Query: 5 WMMDYCDDVLHGEVVACQKHKQACKRFLRDIEREGSEDFPYVFKEEKALR----FL-KWM 59 ++ DY DD G V+ Q+ + R+I D +F +EK ++ F+ KW Sbjct: 4 YVQDYIDDFEKGRVIFNQERQDLVAYIYREIV--PRIDKKEIFFDEKNIKNCINFIEKWF 61 Query: 60 SLFKHTKGKLAGQRIEPHSIQIFVFSNI---YGWVHRNTGLRRFKKAYWQVGRKNAKSQS 116 + + Q F+ S + Y +RN +KK +GR K+ Sbjct: 62 --------------FKLENFQKFIISFVFLRYSETNRNV----YKKILIMMGRGGGKNGL 103 Query: 117 LACVGSYEAMAF-GENMSEVYVGATKTEQSKIVWNEIKAQMNGCEDLKEKFNIAYGKIEH 175 ++ + +Y F G V + A +Q+K ++EI + LKE + +I+ Sbjct: 104 ISGIIAYLLSPFHGIKNYNVSLVANSEDQAKTSFDEIYNTVESNPKLKEIYYNTKSEIKS 163 Query: 176 LKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITT 235 + T+S + G + DGL + DE H + +++ V SG G N I T Sbjct: 164 IHTNS-VMRFRTSNGNTKDGLRDGMVVFDEIHQYESNKDVRVHKSGLGKVKNAREFYIGT 222 Query: 236 AGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCS 295 G+ + K+L N + F + ++D++ E+ + E W+KANP+ Sbjct: 223 DGY-VREGFIDSMKDKAKKVLSGNARWNS--MFPFICKIDEEHEVDDKEKWQKANPM--- 276 Query: 296 YEEGQSFLKGEL--------QSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKE 347 + E S EL + ++ P F+TK M+ V MD+++ E Sbjct: 277 FHEPMSDYAQELFDMVCEQYEEMVEDPSNREEFMTKRMDFPV-------MDVERSVASHE 329 Query: 348 TV-----ELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFM---------- 392 + EL +++G C G+D +A D ++ FK Y+ LSHSF+ Sbjct: 330 ELVATKRELPDMRGEVCIGGLDYAAIRDFAAVGLLFKNGADYVWLSHSFVRKEFVDTYYG 389 Query: 393 ---PEDTLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEIC 449 +D++ KRQ P W Q+ +T A ++ ++I M + + ++ I Sbjct: 390 YSKRKDSINGKRQF--APIKKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQRIV 447 Query: 450 ADPWNATQFMQDMEAEGYTMIE--------------IRQGMATLSGPTKDFREQVYLKKV 495 +D + E EG+ ++ +R A S KV Sbjct: 448 SDNFRMEILKPLFEREGFEVLSKNTFTAPPGYQIEIVRNPRAIDSLLAPRIETAFANHKV 507 Query: 496 IHNNNPVLNWATSNAITKQDANENIMLDKSKATER 530 I +N ++ W T N + + ++ N+ K + T R Sbjct: 508 IFGHNDMMRWYTHNILRRLKSDGNVEYVKKEDTRR 542 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 88.2 bits (217), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 101/445 (22%), Positives = 182/445 (40%), Gaps = 15/445 (3%) Query: 100 FKKAYWQVGRKNAKSQSLAC-VGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNG 158 F + GR K+ L+C + G + + + AT +Q+K + +I + Sbjct: 96 FNDYFIYAGRGFGKNGLLSCMIFECTTKNHGVDHYNIDIVATSEDQAKTSFEDIYNMLEE 155 Query: 159 CED-LKEKFNIAYGKIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDV 217 +D +K + I+H K S I + +A ++ DG DE HA+ Y V Sbjct: 156 NKDTMKNVYRWNLVAIQHRKNGSTIKYKTSNA-RTKDGSRPGAVAFDEEHAYEDYSNYAV 214 Query: 218 LVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKD 277 SG G + +TT G+ + ++L N + N + F + +LD Sbjct: 215 HTSGLGKKERSRRFHLTTDGY-VRGSVLDDRKVLAQQVL--NGEKPNSKMFPFICKLDSP 271 Query: 278 DEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYM 337 DE+ N W KANP++ Y+ + + A E M F+TK MN ++ Sbjct: 272 DEVQNKTKWAKANPMILYYKPLRIEIDQHWDDAQSSSEIMVEFMTKRMNCPT---QDPTT 328 Query: 338 DMQKWKNCKETVE-LSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPEDT 396 KW + K T + + LK G+D + D ++ FKK+ KYI H+F+ ++ Sbjct: 329 VAVKWDDIKATNQPMPSLKMAPAIGGIDFADVRDFCAVGLLFKKEGKYIFKHHTFICAES 388 Query: 397 LAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNAT 456 L K K P V++ T +D ++ K+H +I I D + Sbjct: 389 L--KITKFKFPIHEAVEKGLATIIHDNYIDEDYPLQWFLEQAKEH--RIINIATDSFRYK 444 Query: 457 QFMQDMEAEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDA 516 + + G +I++R G + + + + K+I ++ ++ W +N K DA Sbjct: 445 SLKEAFTSAGAPLIQVRSGPYSHNRLSSMVDKLFASHKIIFGDDMLMRWYCNNVAIKFDA 504 Query: 517 -NENIMLDKSKATERIDPIAAVINS 540 E + T + D A++++ Sbjct: 505 RGEKTYIKIEPKTRKTDGFFALLHT 529 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 86.3 bits (212), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 111/484 (22%), Positives = 205/484 (42%), Gaps = 58/484 (11%) Query: 100 FKKAYWQVGRKNAKSQSLACVGSYEAMAF-GENMSEVYVGATKTEQSKIVWNEIKAQMNG 158 F + + + R K+ ++ +G++ G + V A +Q+++ + EI M Sbjct: 86 FSEFFISMARGGGKNGYISTLGAFFLTPLHGIPKYNMSVVANSEKQAQVSFQEI-YDMIE 144 Query: 159 CEDL---KEK----FNIAYGKIEHLKTDS-FISALSKDAGKSGDGLNVQCGIIDEYHAHP 210 DL K+K FNI+ IE + + F+ S + K+ DG C DE HA+ Sbjct: 145 SNDLYVRKDKPNNPFNISKVLIEGISMKAQFVFDTSNE--KTKDGAREGCVFFDEIHAYE 202 Query: 211 TSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDI-----ENE 265 I +V SG G +P I T G V ++ K+ + ++ + Sbjct: 203 KDTIINVKRSGLGKVAHPRTFYIGTDG--------HVREGFLDKLKERAANVLIGESPED 254 Query: 266 EYFVMVNELDKDDEITNPEVWEKANPILCS--YEEGQSFLKGELQSALDV---PEKMRNF 320 F + ++D +E+ + ++W+KANP+ + + G+ + Q L + P F Sbjct: 255 RLFPFICKIDDKEELHDFDMWQKANPMFEAPMNDYGRQLFQEVKQQYLSLKFNPSGRTEF 314 Query: 321 LTKNMNRWVDMKENGYMDMQKWKNCKET-VELSELKGLECTVGVDLSAKIDLTSISFEFK 379 +TK MN + + + W + T ++ L EC G+D ++ D ++ FK Sbjct: 315 MTKRMNL---PETDSQSVVAPWDDILATNRDMPSLDNHECIGGLDYASLKDFAAVGLLFK 371 Query: 380 KDDKYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWI------TTTPGAVVDYEFIKTH 433 DD+YI +HSF + L E + K P W ++ + T +P ++D+ Sbjct: 372 VDDEYIWKTHSFARKAFLDEYQL--KPPIHEWAEKGLLTIVDEPTISPKHIIDW------ 423 Query: 434 IRNMEKDHKFKIKEICADPWNATQFMQDMEAE--GYTMIEIRQGMATLSGP-TKDFREQV 490 +E + +K++ AD + E Y +++ + + +L P +D Q Sbjct: 424 --FLEAQKHYGLKKVIADNFRMDLLRPLFEENDIDYEVVKNTRAIQSLLAPRVEDMFAQ- 480 Query: 491 YLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATER-IDPIAAVINSHVRC-MLNS 548 + +I +NP++ W T N K D N +K + R D A+I++ R LN Sbjct: 481 --QNIIFGDNPLMRWYTGNVAVKIDKYGNKTYEKKEPVRRKTDGFQALIHALYRADDLNG 538 Query: 549 GEVD 552 +D Sbjct: 539 ASLD 542 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 64.3 bits (155), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 109/512 (21%), Positives = 213/512 (41%), Gaps = 38/512 (7%) Query: 45 YVFKEEKALRFLKWM-SLFKHTKGKLAGQRIEPHSIQIFVFSNIYGWV---HRNTGLRRF 100 Y+++ ++ + ++W+ F T G L +IE Q + + + G+ + + Sbjct: 36 YIYRYDRVTQAIEWIEDNFYLTTGNLM--KIELLPTQRWWYELMLGYDMIDEKGVQVNLI 93 Query: 101 KKAYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCE 160 + + +GR + KS +A + G+ E V A Q++ V+++++ Q + Sbjct: 94 NEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASD 153 Query: 161 DLK--EKFNIAYGKIEHLKTDSFISALSKDAGKS--GDGLNVQCGIIDEYHAHPTSEIYD 216 L+ + I + L+ SF + K + G N I DE H + +I + Sbjct: 154 TLRVYNENKIFKSTKQGLEFASFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG-EDITE 212 Query: 217 VLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDK 276 + GS + + I T+G L Y + + + N+ F ++ L+ Sbjct: 213 SVNKGSRQKQDNWQSIYITSG-GLKRDGL---YDKLVERFKSEEEFYNDRSFGLLYMLEN 268 Query: 277 DDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGY 336 +++ + + W A P++ S + ++ E + A P FL NM + M++ Y Sbjct: 269 HEQVKDKKNWTMALPLIGSVPKWSGVIE-EYELAQGDPALQNKFLAFNMG--LPMQDTAY 325 Query: 337 MDMQKWKNCKET-VELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPED 395 + + K T LS VG+DLS DLT++SF + + K SH+ + Sbjct: 326 YFTPQ--DTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGK--TYSHT-LTFS 380 Query: 396 TLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKT-----HIRNMEKDHKFKIKEICA 450 ++ Q D +LW + ++ ++D E+I HI + ++++I Sbjct: 381 VRSQYEQLDTEQQELWTE--FVDRGELILLDTEYINVNDLIPHINDFRTKTGCRLRKIGY 438 Query: 451 DPWNATQFMQDME-----AEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNW 505 DP +E +G IRQG + ++ K + ++ K+IHN V+ W Sbjct: 439 DPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLVENKLIHNQ-KVMQW 496 Query: 506 ATSNAITKQDANENIMLDKSKATERIDPIAAV 537 A +N K + + M K ++IDP A+ Sbjct: 497 ALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 63.9 bits (154), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 105/511 (20%), Positives = 211/511 (41%), Gaps = 36/511 (7%) Query: 45 YVFKEEKALRFLKWM-SLFKHTKGKLAGQRIEPHSIQIFVFSNIYGWV---HRNTGLRRF 100 Y+++ ++ + ++W+ F T G L +I+ H Q + + + G+ + + Sbjct: 36 YIYRYDRVTQAIEWIEDNFYLTTGNLM--KIKLHPTQKYWYELMLGYDMVDEKGVQVNLI 93 Query: 101 KKAYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCE 160 + + +GR + KS +A + G+ E V A Q++ V+++++ Q + Sbjct: 94 NEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASD 153 Query: 161 DLK--EKFNIAYGKIEHLKTDSFISALSKDAGKS--GDGLNVQCGIIDEYHAHPTSEIYD 216 L+ + I + L+ +F + K + G N I DE H + +I + Sbjct: 154 TLRVYNENKIFKSTKQGLEFTAFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG-EDITE 212 Query: 217 VLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDK 276 + GS + + I T+G L Y + + + N+ F ++ L+ Sbjct: 213 SVNKGSRQKQDNWQSIYITSG-GLKRDGL---YDKLVERFKSEEEFYNDRSFGLLYMLEN 268 Query: 277 DDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGY 336 +++ + + W A P++ + ++ E + A P FL NM + M++ Y Sbjct: 269 HEQVKDKKNWTMALPLIGDVPKWSGVIE-EYELAQGDPALQNKFLAFNMG--LPMQDTAY 325 Query: 337 MDMQKWKNCKETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPEDT 396 + E LS VG+DLS DLT++SF + + K SH+ + Sbjct: 326 YFTPQDTKLTE-FNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGK--TYSHT-LTFSV 381 Query: 397 LAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKT-----HIRNMEKDHKFKIKEICAD 451 ++ Q D +LW + ++ ++D E+I +I + ++++I D Sbjct: 382 RSQYEQLDTEQQELWTE--FVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYD 439 Query: 452 PWNATQFMQDME-----AEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNWA 506 P +E +G IRQG + ++ K + ++ K+IHN V+ WA Sbjct: 440 PARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLVENKLIHNQ-KVMQWA 497 Query: 507 TSNAITKQDANENIMLDKSKATERIDPIAAV 537 +N K + + M K ++IDP A+ Sbjct: 498 LNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 63.5 bits (153), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 107/512 (20%), Positives = 214/512 (41%), Gaps = 38/512 (7%) Query: 45 YVFKEEKALRFLKWM-SLFKHTKGKLAGQRIEPHSIQIFVFSNIYGWV---HRNTGLRRF 100 Y+++ ++ + ++W+ F T G L +I+ H +Q + + + G+ + + Sbjct: 36 YIYRYDRVTQAIEWIEDNFYLTTGNLM--KIKLHPVQKWWYELMLGYDMVDEKGIQVNLV 93 Query: 101 KKAYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCE 160 + + +GR + KS +A + G+ E V A Q++ V+++++ Q + Sbjct: 94 NEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASD 153 Query: 161 DLK--EKFNIAYGKIEHLKTDSFISALSKDAGKS--GDGLNVQCGIIDEYHAHPTSEIYD 216 L+ + I + L+ SF + K + G N I DE H + +I + Sbjct: 154 TLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG-EDITE 212 Query: 217 VLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDK 276 + GS + + I T+G L Y + + + N+ F ++ L+ Sbjct: 213 SVNKGSRQKQDNWQSIYITSG-GLKRDGL---YDKLVERFKSEEEFYNDRSFGLLYMLEN 268 Query: 277 DDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGY 336 +++ + + W A P++ + ++ E + A P FL NM + M++ Y Sbjct: 269 HEQVKDKKNWTMALPLIGDVPKWSGVIE-EYELAQGDPALQNKFLAFNMG--LPMQDTAY 325 Query: 337 MDMQKWKNCKET-VELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPED 395 + + K T LS VG+DLS DLT++SF + + K SH+ + Sbjct: 326 YFTPQ--DTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGK--TYSHT-LTFS 380 Query: 396 TLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKT-----HIRNMEKDHKFKIKEICA 450 ++ Q D +LW + ++ ++D E+I +I + ++++I Sbjct: 381 VRSQYEQLDTEQQELWTE--FVDRGELILLDTEYINVNDLIPYINDFRTKTGCRLRKIGY 438 Query: 451 DPWNATQFMQDME-----AEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNW 505 DP +E +G IRQG + ++ K + ++ K+IHN V+ W Sbjct: 439 DPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLVENKLIHNQ-KVMQW 496 Query: 506 ATSNAITKQDANENIMLDKSKATERIDPIAAV 537 A +N K + + M K ++IDP A+ Sbjct: 497 ALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 62.0 bits (149), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 108/512 (21%), Positives = 213/512 (41%), Gaps = 38/512 (7%) Query: 45 YVFKEEKALRFLKWM-SLFKHTKGKLAGQRIEPHSIQIFVFSNIYGWV---HRNTGLRRF 100 Y+++ ++ + ++W+ F T G L +IE Q + + + G+ + + Sbjct: 36 YIYRYDRVTQAIEWIEDNFYLTTGNLM--KIELLPTQRWWYELMLGYDMIDEKGVQVNLI 93 Query: 101 KKAYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCE 160 + + +GR + KS +A + G+ E V A Q++ V+++++ Q + Sbjct: 94 NEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASD 153 Query: 161 DLK--EKFNIAYGKIEHLKTDSFISALSKDAGKS--GDGLNVQCGIIDEYHAHPTSEIYD 216 L+ + I + L+ SF + K + G N I DE H + +I + Sbjct: 154 TLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG-EDITE 212 Query: 217 VLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDK 276 + GS + + I T+G L Y + + + N+ F ++ L+ Sbjct: 213 SVNKGSRQKQDNWQSIYITSG-GLKRDGL---YDKLVERFKSEEEFYNDRSFGLLYMLEN 268 Query: 277 DDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGY 336 +++ + + W A P++ S + ++ E + A P FL NM + M++ Y Sbjct: 269 HEQVKDKKNWTMALPLIGSVPKWSGVIE-EYELAQGDPALQNKFLAFNMG--LPMQDTAY 325 Query: 337 MDMQKWKNCKET-VELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPED 395 + + K T LS VG+DLS DLT++SF + + K SH+ + Sbjct: 326 YFTPQ--DTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGK--TYSHT-LTFS 380 Query: 396 TLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKT-----HIRNMEKDHKFKIKEICA 450 ++ Q D +LW + ++ ++D E+I +I + ++++I Sbjct: 381 VRSQYEQLDTEQQELWTE--FVDRGELILLDTEYINVNDLIPYINDFRTKTGCRLRKIGY 438 Query: 451 DPWNATQFMQDME-----AEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNW 505 DP +E +G IRQG + ++ K + ++ K+IHN V+ W Sbjct: 439 DPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLAENKLIHNQ-KVMQW 496 Query: 506 ATSNAITKQDANENIMLDKSKATERIDPIAAV 537 A +N K + + M K ++IDP A+ Sbjct: 497 ALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 60.1 bits (144), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 106/512 (20%), Positives = 211/512 (41%), Gaps = 38/512 (7%) Query: 45 YVFKEEKALRFLKWMS-LFKHTKGKLAGQRIEPHSIQIFVFSNIYGWV---HRNTGLRRF 100 Y+++ ++ + ++W+ F T G L +IE Q + + + G+ + + Sbjct: 36 YIYRYDRVTQAIEWIQDNFYLTTGNLM--KIELLPTQRWWYELMLGYDMVDEKGIQVNLV 93 Query: 101 KKAYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGCE 160 + + +GR + KS +A + G+ E V A Q++ V+++++ Q + Sbjct: 94 NEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASD 153 Query: 161 DLK--EKFNIAYGKIEHLKTDSFISALSKDAGKS--GDGLNVQCGIIDEYHAHPTSEIYD 216 L+ + I + L+ SF + K + G N I DE H + +I + Sbjct: 154 TLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG-EDITE 212 Query: 217 VLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDK 276 + GS + + I T+G L Y + + + N+ F ++ L+ Sbjct: 213 SVNKGSRQKQDNWQSIYITSG-GLKRDGL---YDKLVERFKSEEEFYNDRSFGLLYMLEN 268 Query: 277 DDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGY 336 +++ + + W A P++ + ++ E + A P FL NM + M++ Y Sbjct: 269 HEQVKDKKNWTMALPLIGDVPKWSGVIE-EYELAQGDPALQNKFLAFNMG--LPMQDTAY 325 Query: 337 MDMQKWKNCKET-VELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPED 395 + + K T LS VG+DLS DLT++SF + + K + +F Sbjct: 326 YFTPQ--DTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSYTLTF---S 380 Query: 396 TLAEKRQTDKVPYDLWVQQKWITTTPGAVVDYEFIKT-----HIRNMEKDHKFKIKEICA 450 ++ Q D +LW + ++ ++D E+I +I + ++++I Sbjct: 381 VRSQYEQLDTEQQELWTE--FVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGY 438 Query: 451 DPWNATQFMQDME-----AEGYTMIEIRQGMATLSGPTKDFREQVYLKKVIHNNNPVLNW 505 DP +E +G IRQG + ++ K + ++ K+IHN V+ W Sbjct: 439 DPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLVENKLIHNQ-KVMQW 496 Query: 506 ATSNAITKQDANENIMLDKSKATERIDPIAAV 537 A +N K + + M K ++IDP A+ Sbjct: 497 ALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 52.8 bits (125), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 95/488 (19%), Positives = 198/488 (40%), Gaps = 34/488 (6%) Query: 83 VFSNIYGWVHRNTGLRRFKKAYWQVGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKT 142 + + ++G TG+R K+ + + +KN+KS A + + + + A Sbjct: 64 LVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTILAPTV 123 Query: 143 EQSKIVWNEIKAQMNGCEDLKEKFNIA--YGKIEHLKTDSFISALSKDAGKSGDGLNVQC 200 E + +N + + +DL + + I H TD+ + ++ D + G+ Sbjct: 124 EVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRVTDTTLKVVAADP-NTVSGIKSVG 182 Query: 201 GIIDEY----HAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKIL 256 +IDE + ++ + G +RP ++ TT +R + QY + Sbjct: 183 TLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVYTTTQSNEPPAGVFRQKLQYARDVR 242 Query: 257 DPNIDIENEEYFVMV-----NELDKDDEITNPEVWEKANPILCSYEEGQSFLKGELQSAL 311 D I ++ +F+ V E+ + E NP L Y ++FL E + A Sbjct: 243 DGKI---HDPHFLPVIFEHPPEMVESGAHLLMENLAMVNPNL-GYSVDEAFLYREYRKAR 298 Query: 312 DVPEK-MRNFLTKNMNRWVDM--KENGYMDMQKWKNCKETVELSEL--KGLECTVGVDLS 366 + E+ R F++K+ N + + + + + W+ V L ++ + TVG+D Sbjct: 299 EAGEEAFRGFMSKHANVEIGLALRSDRWTGADFWEQQGRRVSLDDILQRADVVTVGIDGG 358 Query: 367 AKIDLTSISFEFKKDDK---YIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPGA 423 DL + + +D + ++ H++ E T +R+++ + +V +T Sbjct: 359 GLDDLLGM-YVIGRDRETREWLGWGHAWAHE-TAVVRRKSEASRFQDFVACGDMTIVRRV 416 Query: 424 VVDYEFIKTHIRNMEKDHKFKIKE-ICADPWNATQFMQDMEAEGY---TMIEIRQGMATL 479 D + ++R + H+ ++ E I DP Q + + G ++ I QG L Sbjct: 417 GDDTAEVAEYVRRI---HEAELLEHIGIDPSGVGQILDSLAEAGIPDGIVVGISQGW-KL 472 Query: 480 SGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVIN 539 G K ++ ++H P++ W NA + N ++ ++ +IDP+ A+ N Sbjct: 473 GGAIKTTERKLAEGVLVHGGQPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFN 532 Query: 540 SHVRCMLN 547 + LN Sbjct: 533 AVSLMSLN 540 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 45.1 bits (105), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 121/299 (40%), Gaps = 23/299 (7%) Query: 107 VGRKNAKSQSLACVGSYEAMAFGENMSEVYVGATKTEQS-KIVWNEIKAQMNGCE----- 160 VGR NAKS + E F + S + + ATK +Q+ KI+ +A M C+ Sbjct: 83 VGRSNAKSILDVMIALIELFLFPKPNSVIALMATKKDQAEKILMKHFRA-MGNCQGTIIN 141 Query: 161 DLKEKFNIAYGKI-----EHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIY 215 K +F + +I LK+ ++ + DG Q IIDE+ A + + Sbjct: 142 KFKNQFKLNKEQILVKDNSILKSKGTEISIYASNEDTLDGGREQLVIIDEFGAFKKNPLI 201 Query: 216 DVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELD 275 + G R N + I+T + Y E + + + ++ ++V LD Sbjct: 202 TI---RQGLRKNKGTLFISTTNNVIRGGAYDDELESWKEWVKD----DDFSHWVFYYALD 254 Query: 276 KDDEITNPEVWEKANPILCSYEEGQSFLKGELQSALDVPEKMRNFLTKNMNRWVDMKENG 335 DE+ + + KANP L Y ++ + A+ P KM +TK N + M ++ Sbjct: 255 DYDEVKDSSKYIKANPAL-GYTLSLEDIQKDFIGAIGNPVKMAKIITKRFN--LSMTDST 311 Query: 336 YMDMQKWKNCKETVELSELKGLECTVGVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPE 394 + K K V + G +G D S + D+ ++++ Y + MPE Sbjct: 312 TI-FSKQLVDKCLVPPLDFSGRLVAIGSDFSVRGDVWGTVIGYRENGHYYFKAIPVMPE 369 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/272 (22%), Positives = 119/272 (43%), Gaps = 34/272 (12%) Query: 96 GLRRFKKAYWQVGRKNAKSQSLACVGSY----EAMAFGENMSE---VYVGAT-KTEQSKI 147 G RF+KA VGR+N K+ A + +Y +A + + + E + VGA K + + Sbjct: 59 GRLRFRKALVIVGRQNGKTLIAAVLAAYWLYVDAGRWPDQLPEQDFIVVGAAQKLDIAMK 118 Query: 148 VWNEIKAQMNGCEDLKEKFNIAYGKIEHL-------KTDSFISALSKDAG-----KSGDG 195 W +++ G D K IA ++ L +T + + L G ++ +G Sbjct: 119 PWRQVRRW--GAPD-DPKVGIARDRVPDLQAFTYPPRTTNGETELRTHGGAAYLPRTFEG 175 Query: 196 LNVQCG---IIDEYHAHPTSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYV 252 Q I+DE E + + + A + L++ + AG S RV + V Sbjct: 176 ARGQSAARLILDELREQYDYEGWSAIEKSANAMFDSLLVAFSNAGTKRS----RV-LRDV 230 Query: 253 SKILDPNIDIENEEYFVMVNELDKDDEITNPEVWEKANPILCSYEEGQSFLKGELQSALD 312 +I +D ++F+ + D + + + +ANP Y G + + G +++A + Sbjct: 231 RQIGHEGVDDRETQWFIAEWSAEPDASLDDERAFAQANPS-AGYLAGMT-IAGLMRAAAE 288 Query: 313 VPEKMRNFLTKNMNRWVDMKENGYMDMQKWKN 344 EK + + + +WV K + ++D ++WK+ Sbjct: 289 AKEKNVERI-EVLGQWVTAKVDNFIDSEEWKS 319 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 40.0 bits (92), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 112/267 (41%), Gaps = 47/267 (17%) Query: 252 VSKILDPNIDIENEEYFVMVNELDKDDEITNPE-VWEKANPILCSYEEGQSFLKGELQSA 310 VS+I P+ D E Y V +L K EI + +W + IL S L + Sbjct: 622 VSEIPFPSDDPEG--YEAGVAQLMKGLEIARGDSIWLPLDDILMSV----------LTAK 669 Query: 311 LDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSEL-KGLECTVGVDLSAKI 369 DV E R FL + V+ E ++ +W + + L L KG T+G D S Sbjct: 670 NDVIESRRKFLNQ-----VNATEESWIAPSEWDRNHD-INLPPLRKGERITLGFDGSLSN 723 Query: 370 DLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQTDKVP---YDLWVQ---QKWITTTPGA 423 D T+++ + +D + L ++PE K + KVP D +V+ +K+ G Sbjct: 724 DHTALT-ACRVEDGALFLVKVWVPE-----KYEGHKVPRQDVDAYVRSMFEKYDVV--GM 775 Query: 424 VVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPT 483 D + + + +D + K+K I A P N F ++R + Sbjct: 776 RADVKEFEQSVDAWGQDFRRKLK-INASPGNPVAF------------DMRGQQKRFALDC 822 Query: 484 KDFREQVYLKKVIHNNNPVLNWATSNA 510 + FR+ V +V H+NNPVL +NA Sbjct: 823 ERFRDAVLAGEVKHDNNPVLKAHITNA 849 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 39.7 bits (91), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/295 (21%), Positives = 114/295 (38%), Gaps = 51/295 (17%) Query: 77 HSIQIFVFSNIYGWVHRNTGL---RRFKKAYWQ---------------------VGRKNA 112 H + + I ++H+N L ++FK W VGR NA Sbjct: 8 HKFNLEKYVRIIAYLHKNFRLPNGKKFKVLNWHALVLSLYYCYDGLTVIEIAAIVGRGNA 67 Query: 113 KSQSLACVGSYEAMAFGENMSEVYVGATKTEQSKIVWNEIKAQMNGC--------EDLKE 164 K+ + E +A GE +E ++G + T I I+ +NG L + Sbjct: 68 KTMLAEFIAGLELIA-GEKGAE-FIGMSVTVDKGI--ESIQKPLNGLVTNPGTSFSKLFK 123 Query: 165 KFNIAY-------GKIEHLKTDSFISALSKDAGKSGDGLNVQCGIIDEYHAHPTSEIYDV 217 K +I+Y + L++ + A + +G + ++DE+ P + + + Sbjct: 124 KGDISYTIDSMSINPLSRLRSKGATFRIVSAADSALNGGREKLAVVDEFGTFPNNPLPTI 183 Query: 218 LVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVMVNELDKD 277 G N +++ T+ + Y E + N +++N + + ++ ELD Sbjct: 184 ---REGLEKNEGLLLTITSNNKVRGGAYDEE---LDTFRGYNDEMDNFKQWGLIFELDDY 237 Query: 278 DEITNPEVWEKANPILCSYEEGQS--FLKGELQSALDVPEKMRNFLTKNMNRWVD 330 +I +P W KANP L + S + EL +A K N +K N V+ Sbjct: 238 SQIEDPNEWYKANPALDEAKGTVSTETITRELNAARHSTIKANNLFSKRFNFSVN 292 >gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817601;genbank:gi:29566031;genbank:GeneID :1259225 Length = 566 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/220 (21%), Positives = 90/220 (40%), Gaps = 18/220 (8%) Query: 307 LQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTVGVDLS 366 L S LD+ + K +N+ ++ E+ ++ +W C+ + KG T+G D S Sbjct: 325 LMSILDIKNSITESRRKFLNQ-INAHEDSWISPNEWNRCQPSTIQPLTKGDRITLGFDGS 383 Query: 367 AKIDLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQTDKVPYDLWVQQKWITTTPGAV-V 425 D T++ + DD + L + PED E + + D V+ + + A Sbjct: 384 KSNDWTAL-VACRVDDGMLFLIKVWNPEDY--ESGEVPREDVDATVRSMFASYDVVAFRA 440 Query: 426 DYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPTKD 485 D + + ++ +D + KI ++ A P N F ++R + + Sbjct: 441 DVKEFEAYVDQWGRDFRKKI-QVNATPGNPIAF------------DMRGQTKRFAFDCER 487 Query: 486 FREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDKS 525 F + V ++V H+ NPVL NA + I + K+ Sbjct: 488 FLDAVIEQEVFHDGNPVLKQHVCNARRHPTTYDAIAIRKA 527 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 69/267 (25%), Positives = 112/267 (41%), Gaps = 47/267 (17%) Query: 252 VSKILDPNIDIENEEYFVMVNELDKDDEITNPE-VWEKANPILCSYEEGQSFLKGELQSA 310 VS+I P+ D E Y V +L K EI + +W + IL S L + Sbjct: 281 VSEIPFPSDDPEG--YEAGVAQLMKGLEIARGDSIWLPLDDILMSV----------LTAK 328 Query: 311 LDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSEL-KGLECTVGVDLSAKI 369 DV E R FL + V+ E ++ +W + + L L KG T+G D S Sbjct: 329 NDVIESRRKFLNQ-----VNATEESWIAPSEWDRNHD-INLPPLRKGERITLGFDGSLSN 382 Query: 370 DLTSISFEFKKDDKYIVLSHSFMPEDTLAEKRQTDKVP---YDLWVQ---QKWITTTPGA 423 D T+++ + +D + L ++PE K + KVP D +V+ +K+ G Sbjct: 383 DHTALT-ACRVEDGALFLVKVWVPE-----KYEGHKVPRQDVDAYVRSMFEKYDVV--GM 434 Query: 424 VVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMATLSGPT 483 D + + + +D + K++ I A P N F ++R + Sbjct: 435 RADVKEFEQSVDAWGQDFRRKLR-INASPGNPVAF------------DMRGQQKRFALDC 481 Query: 484 KDFREQVYLKKVIHNNNPVLNWATSNA 510 + FR+ V +V H+NNPVL +NA Sbjct: 482 ERFRDAVLAGEVKHDNNPVLKAHITNA 508 >gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp10 # Family: family:all:1551 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID :920069 Length = 562 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 27/233 (11%) Query: 302 FLKGELQSALDVPEKMRNFLTKNMNRWVDMKENGYMDMQKWKNCKETVELSELKGLECTV 361 L L + D+ E R FL + V+ E+ ++ W C T KG + T+ Sbjct: 320 ILMSVLSAKNDIIESRRKFLNQ-----VNASEDSWLAPADWDKCHSTSLRPLTKGDKITL 374 Query: 362 GVDLSAKIDLTSISFEFKKDDKYIVLSHSFMPEDTLA---EKRQTDKVPYDLWVQQKWIT 418 G D S D T++ + +D + L + PE+ + K D V + + K+ Sbjct: 375 GFDGSKSNDWTAL-VACRVEDGAVFLIDYWNPENYPSGEVPKEDVDAVVRSM--KDKYEV 431 Query: 419 TTPGAVVDYEFIKTHIRNMEKDHKFKIKEICADPWNATQFMQDMEAEGYTMIEIRQGMAT 478 A D + + ++ + + IK + A P N F ++R Sbjct: 432 VAFRA--DVKEFEAYVDQWGQLFRRTIK-VNASPGNPVAF------------DMRGQTKR 476 Query: 479 LSGPTKDFREQVYLKKVIHNNNPVLNWATSNAITKQDANENIMLDK-SKATER 530 + + F + V ++++H+NNPV+ +NA + I + K SKA++R Sbjct: 477 FALDCERFADAVLEQELVHDNNPVMKAHITNAHRHPTIYDAISIRKPSKASKR 529 >gi|8010|lcl|protein:vir:100250 Length: 570 # NCBI annotation: gp79 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355415;genbank:gi:77864705;genbank:GeneID :3725972 Length = 570 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 23/51 (45%) Query: 497 HNNNPVLNWATSNAITKQDANENIMLDKSKATERIDPIAAVINSHVRCMLN 547 H P+L WA NA N + + T +IDP+ A+ N+ LN Sbjct: 503 HGGQPLLTWAVGNARVVPVGNAVNITKQVSGTAKIDPLMALFNAVSLMALN 553 >gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: putative terminase gp4 # Family: family:all:523 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569740;genbank:gi:18496890;genbank:GeneID :932339 Length = 474 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 6/94 (6%) Query: 211 TSEIYDVLVSGSGARPNPLMMIITTAGFNLSHPCYRVEYQYVSKILDPNIDIENEEYFVM 270 T D +V + A PNPL+++ T P E V ++ D+++ Y + Sbjct: 173 TENAMDDMVPATNAAPNPLILLAGTP----PKPTDPGEVFTVMRLDALAGDVDDVGYVEI 228 Query: 271 VNELDKDDEITNPEVWEKANPILCSYEEGQSFLK 304 D+D + + W K NP ++ L+ Sbjct: 229 --SADEDADPDDRSQWRKMNPSYPHRTSARAILR 260 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.133 0.402 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 264,331 Number of Sequences: 514 Number of extensions: 12480 Number of successful extensions: 406 Number of sequences better than 100.0: 75 Number of HSP's better than 100.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 85 length of query: 564 length of database: 206,069 effective HSP length: 76 effective length of query: 488 effective length of database: 167,005 effective search space: 81498440 effective search space used: 81498440 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)