BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_017968.1_cdsid_YP_006382289.1 [gene=A320_gp33] [protein=phage terminase large subunit] [protein_id=YP_006382289.1] [location=complement(35201..36478)] (425 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 876 0.0 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 876 0.0 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 875 0.0 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 875 0.0 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 875 0.0 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 871 0.0 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 725 0.0 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 556 e-160 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 513 e-147 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 205 1e-54 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 200 2e-53 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 191 1e-50 gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: pu... 153 4e-39 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 151 1e-38 gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF... 138 1e-34 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 137 2e-34 gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: p... 135 1e-33 gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: OR... 134 2e-33 gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF... 134 2e-33 gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF... 134 2e-33 gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF... 133 3e-33 gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: put... 131 1e-32 gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF... 131 2e-32 gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hyp... 129 6e-32 gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: put... 112 6e-27 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 84 3e-18 gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp... 84 4e-18 gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: term... 75 2e-15 gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: ge... 75 2e-15 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 68 2e-13 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 67 3e-13 gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF... 63 6e-12 gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: la... 63 6e-12 gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: put... 58 2e-10 gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: con... 57 5e-10 gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: Te... 55 2e-09 gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putat... 54 5e-09 gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: Ter... 52 1e-08 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 52 1e-08 gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: pu... 48 2e-07 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 47 5e-07 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 47 5e-07 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 46 8e-07 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 44 4e-06 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 44 4e-06 gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp4... 44 4e-06 gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hyp... 44 5e-06 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 36 7e-04 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 36 0.001 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 35 0.001 gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Ter... 33 0.005 gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putat... 33 0.006 gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: ter... 32 0.013 gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: termin... 32 0.016 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 29 0.10 gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6... 27 0.42 gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: te... 26 0.68 gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hy... 25 1.2 gi|16210|lcl|protein:vir:7319 Length: 491 # NCBI annotation: ter... 25 1.7 gi|5525|lcl|protein:vir:95311 Length: 491 # NCBI annotation: put... 25 1.7 gi|5978|lcl|protein:vir:95489 Length: 659 # NCBI annotation: Put... 25 2.3 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 23 5.1 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 23 5.8 gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: put... 23 5.9 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/425 (99%), Positives = 425/425 (100%) Query: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP Sbjct: 23 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 82 Query: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 120 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE Sbjct: 83 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 142 Query: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 180 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKH+NKQIFLMFNPVSKLNWVYKYFFE Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 181 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF+TLDKLVFPKYE Sbjct: 203 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFSTLDKLVFPKYE 262 Query: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV Sbjct: 263 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 322 Query: 301 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 360 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC Sbjct: 323 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 382 Query: 361 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 420 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI Sbjct: 383 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 442 Query: 421 KSLGL 425 KSLGL Sbjct: 443 KSLGL 447 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/425 (99%), Positives = 425/425 (100%) Query: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP Sbjct: 23 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 82 Query: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 120 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE Sbjct: 83 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 142 Query: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 180 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKH+NKQIFLMFNPVSKLNWVYKYFFE Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 181 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF+TLDKLVFPKYE Sbjct: 203 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFSTLDKLVFPKYE 262 Query: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV Sbjct: 263 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 322 Query: 301 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 360 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC Sbjct: 323 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 382 Query: 361 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 420 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI Sbjct: 383 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 442 Query: 421 KSLGL 425 KSLGL Sbjct: 443 KSLGL 447 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/425 (99%), Positives = 425/425 (100%) Query: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP Sbjct: 23 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 82 Query: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 120 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE Sbjct: 83 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 142 Query: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 180 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKH+NKQIFLMFNPVSKLNWVYKYFFE Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 181 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE Sbjct: 203 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 262 Query: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV Sbjct: 263 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 322 Query: 301 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 360 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC Sbjct: 323 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 382 Query: 361 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 420 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTN+SSKVDTI Sbjct: 383 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNLSSKVDTI 442 Query: 421 KSLGL 425 KSLGL Sbjct: 443 KSLGL 447 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/425 (99%), Positives = 425/425 (100%) Query: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP Sbjct: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 Query: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 120 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE Sbjct: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 120 Query: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 180 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKH+NKQIFLMFNPVSKLNWVYKYFFE Sbjct: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 180 Query: 181 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE Sbjct: 181 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 Query: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV Sbjct: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 Query: 301 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 360 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC Sbjct: 301 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 360 Query: 361 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 420 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI Sbjct: 361 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 420 Query: 421 KSLGL 425 KSLGL Sbjct: 421 KSLGL 425 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/425 (99%), Positives = 425/425 (100%) Query: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP Sbjct: 23 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 82 Query: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 120 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE Sbjct: 83 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 142 Query: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 180 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKH+NKQIFLMFNPVSKLNWVYKYFFE Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 181 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE Sbjct: 203 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 262 Query: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV Sbjct: 263 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 322 Query: 301 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 360 IKQLGYA+EEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC Sbjct: 323 IKQLGYAREEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 382 Query: 361 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 420 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTN+SSKVDTI Sbjct: 383 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNLSSKVDTI 442 Query: 421 KSLGL 425 KSLGL Sbjct: 443 KSLGL 447 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/425 (99%), Positives = 424/425 (99%) Query: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP Sbjct: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 Query: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 120 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKV LPNGAVFLFKGLDNPE Sbjct: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVGLPNGAVFLFKGLDNPE 120 Query: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 180 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKH+NKQIFL+FNPVSKLNWVYKYFFE Sbjct: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHVNKQIFLIFNPVSKLNWVYKYFFE 180 Query: 181 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE Sbjct: 181 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 Query: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV Sbjct: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 Query: 301 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 360 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC Sbjct: 301 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 360 Query: 361 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 420 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI Sbjct: 361 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKRTNVSSKVDTI 420 Query: 421 KSLGL 425 KSLGL Sbjct: 421 KSLGL 425 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/401 (88%), Positives = 379/401 (94%) Query: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP Sbjct: 23 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 82 Query: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 120 RRILWLRKVQSTIKDSLFEDVK CLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE Sbjct: 83 RRILWLRKVQSTIKDSLFEDVKGCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 142 Query: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 180 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE Sbjct: 143 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 202 Query: 181 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE Sbjct: 203 HGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 262 Query: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 KR+I+ E+ HLPSYFGLDFGYVNDPSAFIH KID KKLY+I EYVK+GMLN+EIA V Sbjct: 263 KRIISDKEVGHLPSYFGLDFGYVNDPSAFIHVKIDNDNKKLYVISEYVKKGMLNNEIAQV 322 Query: 301 IKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERC 360 I LGY+KE+ITADSAEQKSI E++ G+ RI+P KGK SV+ G+QF+ QF+I++DERC Sbjct: 323 INDLGYSKEKITADSAEQKSIMEIKTNGIDRIVPAMKGKDSVMAGIQFVSQFDIVIDERC 382 Query: 361 FKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVE 401 +KTIEEFDNYTW+KDK+TGEY NEPVDTYNHCID+LRY+VE Sbjct: 383 YKTIEEFDNYTWKKDKNTGEYYNEPVDTYNHCIDALRYAVE 423 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 556 bits (1432), Expect = e-160, Method: Compositional matrix adjust. Identities = 261/405 (64%), Positives = 337/405 (83%), Gaps = 4/405 (0%) Query: 3 KVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQ-DWKYPR 61 K+ + PS VFN++I++ L NY NFTEVHYGG SSGKSHGV QK++LKAL +K+PR Sbjct: 8 KINIVIKHPSKVFNKHIYDKLYNYSNFTEVHYGGASSGKSHGVFQKIILKALNPKFKHPR 67 Query: 62 RILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPEK 121 +IL LRKV +T++DS+F D+ L FGI D C N + ++ LPNGA F+FKG+DNPEK Sbjct: 68 KILVLRKVGATVRDSVFADIMSNLSYFGILDKCKINMSAFRITLPNGAEFIFKGMDNPEK 127 Query: 122 IKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFEH 181 IKSIKGISD+VMEEASEFTL+DYTQLTLRLR++KH+ KQI+LMFNPVSK+NWVYK FF Sbjct: 128 IKSIKGISDVVMEEASEFTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKVNWVYKAFFV- 186 Query: 182 GEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEK 241 + +N ++ Q++Y+DN+FLD++TR+N+E LANRN AYYKIYALG+FATLDKL+FPKY+K Sbjct: 187 -KTPKNTVVYQTTYKDNRFLDDVTRENIEELANRNEAYYKIYALGQFATLDKLIFPKYDK 245 Query: 242 RLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVI 301 +++NKD+L HLPS+FGLD+G++NDPSA +H KID KKLYI+EEYV++ + ND+IAN I Sbjct: 246 QILNKDKLSHLPSFFGLDYGFINDPSALLHVKIDDANKKLYILEEYVRKNLTNDKIANAI 305 Query: 302 KQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERCF 361 K LGYAKEEI DSAE+KS ELRNLG+ R++ KG G+V+QG+Q+L+Q++ IVDERC Sbjct: 306 KDLGYAKEEIRGDSAEKKSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQYDWIVDERCV 365 Query: 362 KTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVE-RFYR 405 KTIEE +NYTW+KDK T EYTNEPVD+YNHCID++RY+V+ R Y+ Sbjct: 366 KTIEELENYTWKKDKKTNEYTNEPVDSYNHCIDAIRYAVQDRIYQ 410 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 513 bits (1322), Expect = e-147, Method: Compositional matrix adjust. Identities = 246/405 (60%), Positives = 315/405 (77%), Gaps = 4/405 (0%) Query: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYP 60 M ++LNF PS VFN+ IF L +Y + TEV YGG SSGKSHGV+QKVVLK+LQ W P Sbjct: 1 MVNIQLNFPHPSKVFNKQIFNNLFDYSHLTEVWYGGASSGKSHGVVQKVVLKSLQHWNVP 60 Query: 61 RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGLDNPE 120 R++LWLRKV T+K+S+F DV +CL + I C N++D + LPNGA+FLF+G+D+PE Sbjct: 61 RKVLWLRKVDRTVKNSIFTDVTECLSGWNILQYCHVNRSDKTIVLPNGAIFLFQGMDDPE 120 Query: 121 KIKSIKGISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFE 180 KIKSIKG+SD+VMEEASEF NDYTQLTLRLRE KH +QIF MFNPVSKLNW Y+ +F+ Sbjct: 121 KIKSIKGLSDVVMEEASEFNHNDYTQLTLRLREPKHKQRQIFCMFNPVSKLNWTYQTWFD 180 Query: 181 HGEPME--NVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPK 238 + V I QS+Y+DN+FLDE + +E L N NPAYYKIY LGEFATLDKLVFP Sbjct: 181 PSADYDRSRVAIHQSTYKDNRFLDEDNIRTIEELKNTNPAYYKIYTLGEFATLDKLVFPY 240 Query: 239 YE-KRLINKD-ELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDE 296 +E KRL +D +L L YFGLD+G++NDPSAF+H K+D++ K LY+++E+VK+G+LN++ Sbjct: 241 FETKRLNPRDPKLLALNDYFGLDYGFINDPSAFMHIKLDMRNKTLYVMDEFVKKGLLNNQ 300 Query: 297 IANVIKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIV 356 +A VIK +GY+KE ITADSAE+KSIAE++ G+ RI P KG S++QG+QFL QF+ +V Sbjct: 301 LAQVIKDMGYSKEVITADSAEKKSIAEMKRDGIYRIRPALKGPDSIIQGIQFLQQFKWVV 360 Query: 357 DERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVE 401 D+RC KTIEE NYT+ KDK T EYTN P+D YNHCID++RY+VE Sbjct: 361 DDRCVKTIEELQNYTYVKDKKTDEYTNRPIDAYNHCIDAIRYAVE 405 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 205 bits (521), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 215/389 (55%), Gaps = 16/389 (4%) Query: 28 NFTEVHYGGGSSGKSHGVIQKVVLKALQ-DWKYPRRILWLRKVQSTIKDSLFEDVKDCLI 86 NF V GG S KS ++ L+ +W +L +R+ +T K S + D+K Sbjct: 27 NFYRVVKGGRGSKKSKTTALYYIVAILKYNWA---NLLVVRRFSNTNKQSTYTDLKWAAN 83 Query: 87 NFGIWDMCLWNKTDNKVEL-PNGAVFLFKGLDNPEKIKSIKG----ISDIVMEEASEFTL 141 + + +N++ ++ + G LF+GLD+P KI SI +S + +EEA + Sbjct: 84 RLNVSHLFKFNESLPEITVKATGQKILFRGLDDPLKITSITVDTGLLSWLWLEEAYQVEN 143 Query: 142 ND-YTQLTLRLR---ERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRD 197 D + L +R + KQI + FNP S+ +W+ FF+ ++V ++YR Sbjct: 144 QDKFETLVESIRGSIDAPDFFKQITVTFNPWSERHWLKSAFFDEDTRKKDVFADTTTYRV 203 Query: 198 NKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEKRL--INKDELRHLPSY 255 N++LD+ E L NP + A G++ + LVF YE + I R + Sbjct: 204 NEWLDQQDIDRYEDLWRTNPRRAAVVANGDWGVAEGLVFENYEVKDFDIVSTIKRIGETT 263 Query: 256 FGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADS 315 GLDFG+ +DP+ F +D++KK+L+I E+ + M D+I +I ITADS Sbjct: 264 AGLDFGFTHDPTTFPRLAVDLEKKELWIYAEHYEHAMTTDDIFKMIVDADMQNAVITADS 323 Query: 316 AEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKD 375 AEQ+ IAEL+ G++R++P+ KGKGS+ G+ F+ QF+I + C KTIEEFD Y +++D Sbjct: 324 AEQRLIAELQAKGIRRLVPSIKGKGSINAGIDFMKQFKIYIHPSCIKTIEEFDTYIYKQD 383 Query: 376 KDTGEYTNEPVDTYNHCIDSLRYSVERFY 404 KD G++ NEP+D+ NH ID++RY++ER++ Sbjct: 384 KD-GKWLNEPIDSNNHIIDAIRYALERYH 411 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 200 bits (509), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/418 (31%), Positives = 225/418 (53%), Gaps = 29/418 (6%) Query: 28 NFTEVHYGGGSSGKSHGVIQKVVLKALQ-DWKYPRRILWLRKVQSTIKDSLFEDVKDCLI 86 NF V G S KS ++ + ++ DW IL +R+ +T K S + D+K Sbjct: 23 NFYRVVKGSRGSKKSKTTAINLIYRIMKYDWA---NILVVRRFSNTNKQSTYTDLKWATN 79 Query: 87 NFGIWDMCLWNKTDNKVEL-PNGAVFLFKGLDNPEKIKSIKGISDIV----MEEASEF-T 140 G+ + +N++ ++ P G LF+GLD+P KI SI + I+ EEA + T Sbjct: 80 QLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSITVDTGILCWAWFEEAYQIET 139 Query: 141 LNDYTQLTLRLR---ERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRD 197 ++ + +R + KQI + FNP S+ +W+ FF+ + N ++YR Sbjct: 140 FAKFSTVVESIRGSYDSPEFFKQITVTFNPWSERHWLKPTFFDEETKLNNTFSDTTTYRV 199 Query: 198 NKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE-------KRLINKDELR 250 N++LD++ + E L +NP +I G++ + LVF ++ + E+ Sbjct: 200 NEWLDKVDIERYEDLYIKNPRRARIVCDGDWGVAEGLVFDNFKVEDFDWFEEFKRTQEIT 259 Query: 251 HLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEE 310 H G+DFG+ DP+ + + +D+K KKL+I +E+ K+ ML D+I ++ + G + Sbjct: 260 H-----GMDFGFSQDPTTVVSTVVDLKNKKLFIYDEHYKKAMLTDDIKQMLIKKGLGDVD 314 Query: 311 ITAD--SAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFD 368 I AD + + I+EL++ G+K I KG +++ G+QF+ FE+I+ C IEEF+ Sbjct: 315 IAADYGAGGDRVISELKSKGIKGIRKALKGANTILPGIQFIQGFEVIIHPSCEHAIEEFN 374 Query: 369 NYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRPVRKR-TNVSSKVDTIKSLGL 425 YT+ +D D G++ N+P+D NH ID+LRYS+E+++ +KR N+ SK IKSLGL Sbjct: 375 TYTFDQDND-GKWLNKPIDANNHIIDALRYSLEKYHIVRKKRKKNIESKTKVIKSLGL 431 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 191 bits (486), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/407 (31%), Positives = 218/407 (53%), Gaps = 18/407 (4%) Query: 32 VHYGGGSSGKSHGVIQKVVLKALQDWKYPRRILWL--RKVQSTIKDSLFEDVKDCLINFG 89 V+ G SGKS+ KV++ + YP + WL R+ +T KDS F ++ + G Sbjct: 39 VYKGSRGSGKSYATAAKVIIDIMM---YPY-VNWLVTRQYATTQKDSTFATIRKVAHSMG 94 Query: 90 IWDMCLWNKTDNKVEL-PNGAVFLFKGLDNPEKIKSIKGISDIVM----EEASEF-TLN- 142 + D+ + K+ ++ G F+G+D+P KI SI+ ++ + EEA E +L+ Sbjct: 95 VLDLFKFTKSPLEITYKQTGQKVFFRGMDDPLKITSIQPVTGFICRRWCEEAYELKSLDA 154 Query: 143 -DYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFL 201 D + ++R Q + FNP S +W+ FF+ + ++Y+DN L Sbjct: 155 FDTVEESMRGELPPGGFYQTVITFNPWSDRHWLKHEFFDDKTKRNHSRAITTTYKDNDHL 214 Query: 202 DEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPK-YEKRLINKDELRHLPSYFGLDF 260 + +L+ + RNP ++ LGE+ + LVF +E+R + DE+ +LP GLDF Sbjct: 215 NADYVDSLKEMLVRNPNRARVAVLGEWGIAEGLVFDGLFEQRDFSYDEIANLPKSVGLDF 274 Query: 261 GYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKS 320 G+ +DP+A +D + +YI +E+ KQ +L ++IA + + ITADSAEQ+ Sbjct: 275 GFKHDPTAGEFIAVDQDNRIVYIYDEFYKQHLLTNQIAQELAKHKAFGLPITADSAEQRM 334 Query: 321 IAEL-RNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKDKDTG 379 I EL + + I P+ KGK SV+QG+Q++ + +V R +EEF+ Y + DK+ G Sbjct: 335 IVELSQQHRVPNIKPSGKGKDSVIQGIQYMQSYRFVVHPRVKGLMEEFNTYVYDMDKE-G 393 Query: 380 EYTNEPVDTYNHCIDSLRYSVERF-YRPVRKRTNVSSKVDTIKSLGL 425 + N+P D NH ID+LRY++E++ + N +V T+K+LGL Sbjct: 394 NWLNKPKDANNHAIDALRYALEKYMFVRAGHYMNYQERVSTLKNLGL 440 >gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950600;genbank:gi:119953680;genbank:GeneI D:4643107 Length = 421 Score = 153 bits (386), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 123/391 (31%), Positives = 187/391 (47%), Gaps = 25/391 (6%) Query: 32 VHYGGGSSGKSHGV---IQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINF 88 V GG SGKS + I +++++ YP + +RK +T+ S+FE +K + Sbjct: 31 VAKGGRGSGKSSDISIIITQLIMR------YPMNAVVVRKTDNTLATSVFEQIKWAIEEQ 84 Query: 89 GIWDMCLWNKTDNKVE-LPNGAVFLFKGLDNPEKIKSIKG----ISDIVMEEASEFTLND 143 + + + ++ +P G +F+G NPE++KS+K S + +EE +EF D Sbjct: 85 KVSHLFKVKVSPMEITYVPRGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEELAEFKTED 144 Query: 144 YTQLTLRLRERKHMNKQIFLMF-----NPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDN 198 R ++ +F F P K +WV K + +P +N + S+Y DN Sbjct: 145 EVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQP-DNTFVHHSTYLDN 203 Query: 199 KFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEKRLINKDELRHLPSYF-G 257 F+ + Q E RN Y+ +GE + F + I D + + Sbjct: 204 PFISKQFIQEAESAKERNEQRYRWEYMGEAIGSGVVPFNNLQIEKIPDDLYKTFDNIRNA 263 Query: 258 LDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAE 317 +DFGY DP AF+ D KK+ +Y ++E+ + N E AN +K+ GY +EI ADSAE Sbjct: 264 VDFGYATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKRRGYQSDEIYADSAE 323 Query: 318 QKSIAELRN-LGLKRILPTKKGKGSVVQGLQFLMQFEIIV--DERCFKTIEEFDNYTWQK 374 KSIAEL+ G+KRI KKG SV G Q+L IV R EF+N ++ Sbjct: 324 PKSIAELKQEHGIKRIKGVKKGPDSVEHGEQWLDDLTAIVIDPNRTPNIAREFENIDYET 383 Query: 375 DKDTGEYTNEPVDTYNHCIDSLRYSVERFYR 405 DKD G D NH ID+ RY++ER R Sbjct: 384 DKD-GNVKPRLEDKDNHTIDATRYALERDMR 413 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneID :5133130 Length = 419 Score = 151 bits (382), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 123/388 (31%), Positives = 187/388 (48%), Gaps = 19/388 (4%) Query: 32 VHYGGGSSGKSHGVIQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIW 91 V GG SGKS + +VL + +YP L LRK+ +T+ S+FE +K + G+ Sbjct: 29 VAKGGRGSGKSSDIAIIIVLLIM---RYPVNALILRKIDNTLALSVFEQIKWAINVMGVS 85 Query: 92 DMCLWNKTDNKVE-LPNGAVFLFKGLDNPEKIKSIKGI----SDIVMEEASEFTLNDYTQ 146 + + ++ +P G +F+G NPE+IKS+K + +EE +EF D Sbjct: 86 HLFKIKVSPMEITYVPRGNKMVFRGAQNPERIKSLKDAQFPYAIAWIEELAEFKTEDEVT 145 Query: 147 LTLRLRERKHMNKQIFLMF-----NPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFL 201 R ++ +F F P K +WV K + +P +N + S+Y +N F+ Sbjct: 146 TITNSLLRGELDNGLFYKFFYTYNPPKRKQSWVNKKYESSFQP-DNTFVHHSTYLNNPFI 204 Query: 202 DEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEKRLINKDELRHLPSYF-GLDF 260 + + + N Y+ LGE + F I K++ + +DF Sbjct: 205 AKEFIEEAKAAKAINELRYRWEYLGEAIGSGVVPFNNLRIETIPKEQFDTFDNIRNAVDF 264 Query: 261 GYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKS 320 GY DP AF+ D KK+ +Y ++E+ + N E AN +K+ GY +EI ADSAE KS Sbjct: 265 GYATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKKKGYQSDEIYADSAEPKS 324 Query: 321 IAELRN-LGLKRILPTKKGKGSVVQGLQFLMQFEIIVDE--RCFKTIEEFDNYTWQKDKD 377 IAEL+ ++RI KKG SV G Q+L + IV + R EF+N +Q DKD Sbjct: 325 IAELKQEHSIRRIKGVKKGPDSVEHGEQWLNDLDAIVIDPTRTPNIAREFENIDYQTDKD 384 Query: 378 TGEYTNEPVDTYNHCIDSLRYSVERFYR 405 G D NH ID+ RY++ER R Sbjct: 385 -GNVKPRLEDKDNHTIDATRYALERDMR 411 >gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240151;genbank:gi:66395816;genbank:GeneID :5133181 Length = 421 Score = 138 bits (348), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 111/362 (30%), Positives = 171/362 (47%), Gaps = 16/362 (4%) Query: 58 KYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVE-LPNGAVFLFKGL 116 +YP + +RK +T+ S+FE +K + + + + ++ +P G +F+G Sbjct: 54 RYPMNAVVVRKTDNTLATSVFEQIKWAIEQQKVSHLFKVKVSPMEITYMPRGNRIIFRGA 113 Query: 117 DNPEKIKSIKG----ISDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMF-----NP 167 NPE++KS+K S + +EE +EF D R +++ +F F P Sbjct: 114 QNPERLKSLKDSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDEGLFYKFFFSYNPP 173 Query: 168 VSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGE 227 K +WV K + +P +N + S+Y DN F+ + E RN Y+ LGE Sbjct: 174 KRKQSWVNKKYESSFQP-DNTFVHHSTYLDNPFIAKQFIDEAEAAKERNELRYRWEYLGE 232 Query: 228 FATLDKLVFPKYEKRLINKDELRHLPSYF-GLDFGYVNDPSAFIHSKIDVKKKKLYIIEE 286 + F + I + R + +DFGY DP AF+ D KK+ +Y ++E Sbjct: 233 AIGSGVVPFNNLQIEKIPDELFRSFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAVDE 292 Query: 287 YVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELR-NLGLKRILPTKKGKGSVVQG 345 Y + N + + GY ++I ADSAE KSI ELR G+KRI KKG SV G Sbjct: 293 YYGVQISNRQFGKWLWSKGYQSDDIYADSAEPKSIDELRKEHGIKRIKGVKKGPDSVEYG 352 Query: 346 LQFLMQFEIIV--DERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERF 403 Q+L + IV R EF+N ++ DKD G + D NH ID+ RY++ER Sbjct: 353 EQWLNDLDAIVIDPNRTPNIAREFENIDFETDKD-GNVKPKLEDKDNHTIDATRYALERD 411 Query: 404 YR 405 R Sbjct: 412 MR 413 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:Ge neID:4955190 Length = 417 Score = 137 bits (346), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 121/399 (30%), Positives = 196/399 (49%), Gaps = 37/399 (9%) Query: 28 NFTEVHY----GGGSSGKSHGVIQKVVLKALQDWKYP-RRILWLRKVQSTIKDSLFEDVK 82 NFT+ Y G SGKS V Q +LK L D KY +L +RK ++T K S + ++ Sbjct: 19 NFTKKRYRAMKGSAGSGKSVNVAQDYILK-LGDKKYQGANLLVVRKSEATHKYSTYAELT 77 Query: 83 DCLIN-FGIWDMCLWNKTDNKVELPN---GAVFLFKGLDNP---EKIKSI---KG-ISDI 131 + +G W T N +E+ + G +F+G+++ EK+KSI KG ++ + Sbjct: 78 GAINRIYGKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQREKLKSINFSKGKLTWV 137 Query: 132 VMEEASEFTLNDYTQLTLRLR---ERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENV 188 EEA+E +D L RLR ++ Q+ FNPVS +W+ + +F++ +++ Sbjct: 138 WCEEATELMESDIDILDDRLRGILTNPNLYYQMTFTFNPVSATHWIKRKYFDYKN--DDI 195 Query: 189 MIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEKRLINKDE 248 S+Y N+F+DE + +++ ++P YK+Y LGE+ + Y +I+ E Sbjct: 196 FTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYKVYGLGEWGETGGAILKNY---VIH--E 250 Query: 249 LRHLPSYF-----GLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQ 303 YF DFG+ + A + +I K +LYI E M EI + Sbjct: 251 FPTESEYFDNMRLSQDFGFNH---ANVVLRIGFKDGELYICNEIYAHEMDTSEIIKIANS 307 Query: 304 LGYAKEE-ITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFK 362 +G K + DSAE I ++ G K KKG GSV + +L Q I V C Sbjct: 308 IGLEKTLFMYCDSAEPDRIKMWKSAGYK-AKGVKKGPGSVKAQIDYLKQLRIHVHPSCTN 366 Query: 363 TIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVE 401 TI+E + W++D+ TG Y +EPV+ + + +LRYS++ Sbjct: 367 TIKEIQQWKWKQDERTGLYLDEPVEFMDDAMAALRYSID 405 >gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950664;genbank:gi:119967835;genbank:GeneI D:4643176 Length = 446 Score = 135 bits (340), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 124/422 (29%), Positives = 187/422 (44%), Gaps = 61/422 (14%) Query: 32 VHYGGGSSGKSHGV---IQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINF 88 V GG SGKS + I +++++ YP + +RK +T+ S+FE +K + Sbjct: 30 VAKGGRGSGKSSDISIIITQLIMR------YPMNAVVVRKADNTLATSVFEQIKWAIEEQ 83 Query: 89 GIWDMCLWNKTDNKVE-LPNGAVFLFKGLDNPEKIKSIKG----ISDIVMEEASEFTLND 143 + + + ++ +P G +F+G NPE++KS+K S + +EE +EF D Sbjct: 84 KVSHLFKVKVSPMEITYVPRGNRIIFRGAQNPERLKSLKDSRFPFSIMWIEELAEFKTED 143 Query: 144 YTQLTLRLRERKHMNKQIFLMF-----NPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDN 198 R ++ +F F P K +WV K + +P +N + S+Y DN Sbjct: 144 EVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQP-DNTFVHHSTYLDN 202 Query: 199 KFLDEMTRQNLELLANRNPAYYKIYALGE-----FATLDKLVFPKYEKRLINK-DELRHL 252 F+ + Q E RN Y+ +GE + L K L D +R+ Sbjct: 203 PFISKQFIQEAESAKERNEQRYRWEYMGEAIGSGVVPFNNLQIEKIPDELYKSFDNIRN- 261 Query: 253 PSYFGLDFGY--------------------------VNDPSAFIHSKIDVKKKKLYIIEE 286 +DFG DP AF+ D KK+ +Y ++E Sbjct: 262 ----AVDFGLTKTAPLHSDVYSKLGEHISGVRKKACATDPLAFVRWHYDKKKRIIYAVDE 317 Query: 287 YVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRN-LGLKRILPTKKGKGSVVQG 345 + + N E AN +K+ GY +EI ADSAE KSIAEL+ G+KRI KKG SV G Sbjct: 318 HYGVQISNREFANWLKRRGYQSDEIYADSAEPKSIAELKQEHGIKRIKGVKKGPDSVEHG 377 Query: 346 LQFLMQFEIIV--DERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERF 403 Q+L IV R EF+N ++ DKD G D NH ID+ RY++ER Sbjct: 378 EQWLDDLTAIVIDPNRTPNIAREFENIDYETDKD-GNVKPRLEDKDNHTIDATRYALERD 436 Query: 404 YR 405 R Sbjct: 437 MR 438 >gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240743;genbank:gi:66396415;genbank:GeneID :5133804 Length = 421 Score = 134 bits (337), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 118/396 (29%), Positives = 189/396 (47%), Gaps = 35/396 (8%) Query: 32 VHYGGGSSGKSHGV---IQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINF 88 V GG SGKS + I +++++ YP + +RK +T+ S+FE +K + Sbjct: 31 VAKGGRGSGKSSDISIIITQLIMR------YPMNAVVIRKTDNTLATSVFEQIKWAIEEQ 84 Query: 89 GIWDMCLWNKTDNKVE-LPNGAVFLFKGLDNPEKIKSIKG----ISDIVMEEASEFTLND 143 + + + ++ +P G +F+G NPE++KS+K S +EE +EF D Sbjct: 85 KVSHLFKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSIAWIEELAEFKTED 144 Query: 144 YTQLTLRLRERKHMNKQIFLMF-----NPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDN 198 R +++ +F F P K +WV K + E +N + S+Y +N Sbjct: 145 EVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKY-ESSFQADNTYVHHSTYLNN 203 Query: 199 KFLDEMTRQNLELLANRNPAYYKIYALGE-----FATLDKLVFPKYEKRLINK-DELRHL 252 F+ + Q E RN Y+ +GE + L + +R + D +R+ Sbjct: 204 PFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQRQYDTFDNIRN- 262 Query: 253 PSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEIT 312 +DFGY DP AF+ D KK+ +Y ++EY + N E AN +K+ GY +EI Sbjct: 263 ----AVDFGYATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKKKGYQSDEIF 318 Query: 313 ADSAEQKSIAELRNLGLKRILPTKKGKGSVVQ-GLQFLMQFE-IIVDERCFKTI-EEFDN 369 ADSAE KSIAEL+ + + K V+ G Q+L + I++D R I EF+N Sbjct: 319 ADSAEPKSIAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRTPNIAREFEN 378 Query: 370 YTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYR 405 ++ DKD G + D NH ID+ RY++ER R Sbjct: 379 IDYETDKD-GNVKPKLEDKDNHTIDATRYALERDMR 413 >gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240671;genbank:gi:66396341;genbank:GeneID :5133763 Length = 421 Score = 134 bits (337), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 118/396 (29%), Positives = 189/396 (47%), Gaps = 35/396 (8%) Query: 32 VHYGGGSSGKSHGV---IQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINF 88 V GG SGKS + I +++++ YP + +RK +T+ S+FE +K + Sbjct: 31 VAKGGRGSGKSSDISIIITQLIMR------YPMNAVVIRKTDNTLATSVFEQIKWAIEEQ 84 Query: 89 GIWDMCLWNKTDNKVE-LPNGAVFLFKGLDNPEKIKSIKG----ISDIVMEEASEFTLND 143 + + + ++ +P G +F+G NPE++KS+K S +EE +EF D Sbjct: 85 KVSHLFKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSIAWIEELAEFKTED 144 Query: 144 YTQLTLRLRERKHMNKQIFLMF-----NPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDN 198 R +++ +F F P K +WV K + E +N + S+Y +N Sbjct: 145 EVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKY-ESSFQADNTYVHHSTYLNN 203 Query: 199 KFLDEMTRQNLELLANRNPAYYKIYALGE-----FATLDKLVFPKYEKRLINK-DELRHL 252 F+ + Q E RN Y+ +GE + L + +R + D +R+ Sbjct: 204 PFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQRQYDTFDNIRN- 262 Query: 253 PSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEIT 312 +DFGY DP AF+ D KK+ +Y ++EY + N E AN +K+ GY +EI Sbjct: 263 ----AVDFGYATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKKKGYQSDEIF 318 Query: 313 ADSAEQKSIAELRNLGLKRILPTKKGKGSVVQ-GLQFLMQFE-IIVDERCFKTI-EEFDN 369 ADSAE KSIAEL+ + + K V+ G Q+L + I++D R I EF+N Sbjct: 319 ADSAEPKSIAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRTPNIAREFEN 378 Query: 370 YTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYR 405 ++ DKD G + D NH ID+ RY++ER R Sbjct: 379 IDYETDKD-GNVKPKLEDKDNHTIDATRYALERDMR 413 >gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240307;genbank:gi:66395973;genbank:GeneID :5133377 Length = 421 Score = 134 bits (336), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 123/393 (31%), Positives = 191/393 (48%), Gaps = 35/393 (8%) Query: 35 GGGSSGKSHGV---IQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIW 91 GG SGKS + I +++++ YP + +RK +T+ S+FE +K + + Sbjct: 34 GGRGSGKSSDISIIITQLIMR------YPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVT 87 Query: 92 DMCLWNKTDNKVE-LPNGAVFLFKGLDNPEKIKSIKG----ISDIVMEEASEFTLNDYTQ 146 + + ++ +P G +F+G NPE++KS+K S +EE +EF D Sbjct: 88 HLFKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSIAWIEELAEFKTEDEVT 147 Query: 147 LTLRLRERKHMNKQIFLMF-----NPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFL 201 R +++ +F F P K +WV K + E +N + S+Y +N F+ Sbjct: 148 TITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKY-ESSFQADNTFVHHSTYLNNPFI 206 Query: 202 DEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEKRLINK------DELRHLPSY 255 + Q E RN Y+ +GE + F I + D +R+ Sbjct: 207 SKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQGQYDTFDNIRN---- 262 Query: 256 FGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADS 315 +DFGY DP AF+ D KK+ +Y ++E+ + N E AN +K+ GY +EI ADS Sbjct: 263 -AVDFGYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGYQSDEIFADS 321 Query: 316 AEQKSIAELRN-LGLKRILPTKKGKGSVVQGLQFLMQFE-IIVDERCFKTI-EEFDNYTW 372 AE KSIAEL+ G+K++ KKG SV G Q+L E I++D R I EF+N + Sbjct: 322 AEPKSIAELKQEHGIKKVKAVKKGADSVEYGEQWLDDLEAIVIDPRRTPNIAREFENIDY 381 Query: 373 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYR 405 Q DKD G + D NH ID+ RY++ER R Sbjct: 382 QTDKD-GNVKPKLEDKDNHAIDATRYALERDMR 413 >gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240381;genbank:gi:66396048;genbank:GeneID :5133401 Length = 421 Score = 133 bits (335), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 123/393 (31%), Positives = 191/393 (48%), Gaps = 35/393 (8%) Query: 35 GGGSSGKSHGV---IQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIW 91 GG SGKS + I +++++ YP + +RK +T+ S+FE +K + + Sbjct: 34 GGRGSGKSSDISIIITQLIMR------YPMNAVVIRKTDNTLATSVFEQIKWAIEEQKVS 87 Query: 92 DMCLWNKTDNKVE-LPNGAVFLFKGLDNPEKIKSIKG----ISDIVMEEASEFTLNDYTQ 146 + + ++ +P G +F+G NPE++KS+K S +EE +EF D Sbjct: 88 HLFKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSVAWIEELAEFKTEDEVT 147 Query: 147 LTLRLRERKHMNKQIFLMF-----NPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFL 201 R +++ +F F P K +WV K + E +N + S+Y +N F+ Sbjct: 148 TITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKY-ESSFQADNTFVHHSTYLNNPFI 206 Query: 202 DEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEKRLINK------DELRHLPSY 255 + Q E RN Y+ +GE + F I + D +R+ Sbjct: 207 SKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQGQYDTFDNIRN---- 262 Query: 256 FGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADS 315 +DFGY DP AF+ D KK+ +Y ++E+ + N E AN +K+ GY +EI ADS Sbjct: 263 -AVDFGYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGYQSDEIFADS 321 Query: 316 AEQKSIAELRN-LGLKRILPTKKGKGSVVQGLQFLMQFE-IIVDERCFKTI-EEFDNYTW 372 AE KSIAEL+ G+K++ KKG SV G Q+L E I++D R I EF+N + Sbjct: 322 AEPKSIAELKQEHGIKKVKAVKKGADSVEYGEQWLDDLEAIVIDPRRTPNIAREFENIDY 381 Query: 373 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYR 405 Q DKD G + D NH ID+ RY++ER R Sbjct: 382 QTDKD-GNVKPKLEDKDNHAIDATRYALERDMR 413 >gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224236;genbank:gi:62362371;genbank:GeneID :3345721 Length = 408 Score = 131 bits (330), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 120/397 (30%), Positives = 204/397 (51%), Gaps = 37/397 (9%) Query: 34 YGGGSSGKSHGVIQ-KVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLIN----F 88 YG SGKS + + A++ RIL R++Q +IK+S ++K+ + + Sbjct: 29 YGSRGSGKSFNFAKMAAIWGAIEK----MRILCTRELQVSIKESFHAELKNAIKSDEWLS 84 Query: 89 GIWDMCLWNKTDNKVELPNGAVFLFKGLDNP-EKIKSIKGISDIVMEEASEFTLNDYTQL 147 I+D+ + +N NG FLFKGL + +KS I ++EEA + N + +L Sbjct: 85 SIYDVGIDYIRNNN----NGTEFLFKGLRHGMGSVKSTAQIDLTIVEEAEDVPENAWVEL 140 Query: 148 TLRL-RERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKF----LD 202 + R K + ++++NP K + V K F + +P + V++ + +Y DN F L+ Sbjct: 141 LPTIFRTDK---AECWVIWNPRKKGSPVDKRFRQF-KPDDAVVV-EMNYYDNPFFPKGLE 195 Query: 203 EMTRQNLELLANRNPAYYKIYALGEF-ATLDKLVFPKYEKRLINKDELRHLPSYFGLDFG 261 ++ R + + + P Y LG + + VF ++ +N + Y+GLDFG Sbjct: 196 DLRRHDEDTMP---PELYAHVWLGAYYEHTEAQVFKNWKVEQVNTNGWEG--PYYGLDFG 250 Query: 262 YVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIAN-VIKQL-GYAKEEITADSAEQK 319 + DP+A + K + +YI +E K G+ D A+ +IK++ G ++ ADSA + Sbjct: 251 FSQDPTAGV--KCWLNGNDVYIEKEAGKVGLEIDHTADYLIKRIDGIDDAKVYADSARPE 308 Query: 320 SIAELRNLGLKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKDKDTG 379 SI+ L+ G+ RI K KGSV G+++L I +D C +TI+EF Y+++ D+ TG Sbjct: 309 SISLLKRTGIPRIEGVPKWKGSVEDGVEWLRSKRIFIDPECTETIKEFTYYSYKTDRYTG 368 Query: 380 EYTNEPVDTYNHCIDSLRYSVE---RFYRPVRKRTNV 413 E N+ VD YNH ID++RY + P + TN+ Sbjct: 369 EIKNQLVDAYNHYIDAIRYCFNDMITYSPPPKTDTNI 405 >gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240816;genbank:gi:66394679;genbank:GeneID :5133852 Length = 421 Score = 131 bits (329), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 116/396 (29%), Positives = 189/396 (47%), Gaps = 35/396 (8%) Query: 32 VHYGGGSSGKSHGV---IQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINF 88 V GG SGKS + I +++++ YP + +RK +T+ S+FE +K + Sbjct: 31 VAKGGRGSGKSSDISIIITQLIMR------YPMNAVVIRKTDNTLATSVFEQIKWAIEEQ 84 Query: 89 GIWDMCLWNKTDNKVE-LPNGAVFLFKGLDNPEKIKSIKG----ISDIVMEEASEFTLND 143 + + + ++ +P G +F+G NPE++KS+K S +EE +EF D Sbjct: 85 KVSHLFKVKVSPMEITYIPRGNRIIFRGAQNPERLKSLKDSRFPFSISWIEELAEFKTED 144 Query: 144 YTQLTLRLRERKHMNKQIFLMF-----NPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDN 198 R +++ +F F P K +WV K + E +N + S+Y +N Sbjct: 145 EVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQSWVNKKY-ESSFQADNTYVHHSTYLNN 203 Query: 199 KFLDEMTRQNLELLANRNPAYYKIYALGE-----FATLDKLVFPKYEKRLINK-DELRHL 252 F+ + Q E RN Y+ +GE + L + +R + D +R+ Sbjct: 204 PFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVVPFNNLRIEEIPQRQYDTFDNIRN- 262 Query: 253 PSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEIT 312 +DFGY DP AF+ D KK+ +Y ++E+ + N E AN +K+ GY +E+ Sbjct: 263 ----AVDFGYATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKGYQSDEVF 318 Query: 313 ADSAEQKSIAELRNLGLKRILPTKKGKGSVVQ-GLQFLMQFE-IIVDERCFKTI-EEFDN 369 ADSAE KSIAEL+ + + K V+ G Q+L + I++D R I EF+N Sbjct: 319 ADSAEPKSIAELKQEHGIKKIKGVKKGADSVEFGEQWLDDLDAIVIDPRRTPNIAREFEN 378 Query: 370 YTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYR 405 ++ DKD G + D NH ID+ RY++ER R Sbjct: 379 IDYETDKD-GNVKPKLEDKDNHTIDATRYALERDMR 413 >gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690654;genbank:geneid:6329138;genbank:gi: 22855048;goa:P54308;interpro:IPR006437;interpro:IPR00670 1;interpro:IPR011441;uniprot:P54308;genbank:GeneID:95525 4 Length = 422 Score = 129 bits (325), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 128/429 (29%), Positives = 197/429 (45%), Gaps = 45/429 (10%) Query: 1 MTKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHY---GGGSSGKSHGVIQKVVLKALQDW 57 M KV+L S F + E+ + Y GG S KS + ++L + Sbjct: 1 MKKVRL-----SEKFTPHFLEVWRTVKAAQHLKYVLKGGRGSAKSTHIAMWIILLMMM-- 53 Query: 58 KYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMC----LWNKTDNKVEL---PNGAV 110 P L +R+V +T++ S+FE +K+ + DM LW + + + L P G Sbjct: 54 -MPITFLVIRRVYNTVEQSVFEQLKEAI------DMLEVGHLWKVSKSPLRLTYIPRGNS 106 Query: 111 FLFKGLDNPEKIKSIKG----ISDIVMEEASEFTLNDYTQL----TLRLRERKHMNKQIF 162 +F+G D+ +KIKSIK ++ + +EE +EF + + LR F Sbjct: 107 IIFRGGDDVQKIKSIKASKFPVAGMWIEELAEFKTEEEVSVIEKSVLRAELPPGCRYIFF 166 Query: 163 LMFNPVS-KLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYK 221 +NP K +WV K F P N + S+Y N FL + + E + RN Y+ Sbjct: 167 YSYNPPKRKQSWVNKVFNSSFLPA-NTFVDHSTYLQNPFLSKAFIEEAEEVKRRNELKYR 225 Query: 222 IYALGEFATLDKLVFP----KYEKRLINKDELRHLPSYF-GLDFGYVNDPSAFIHSKIDV 276 LGE L V P + E+ +I E+ + GLDFGY DP AF+ D Sbjct: 226 HEYLGE--ALGSGVVPFENLQIEEGIITDAEVARFDNIRQGLDFGYGPDPLAFVRWHYDK 283 Query: 277 KKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELR-NLGLKRILPT 335 +K ++Y I+E V + A+ +++ Y I ADS+E +SI L+ G+ RI Sbjct: 284 RKNRIYAIDELVDHKVSLKRTADFVRKNKYESARIIADSSEPRSIDALKLEHGINRIEGA 343 Query: 336 KKGKGSVVQGLQFLMQFEIIVDE--RCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCI 393 KKG SV G ++L + + IV + R EF+N +Q DK+ G+ D NH I Sbjct: 344 KKGPDSVEHGERWLDELDAIVIDPLRTPNIAREFENIDYQTDKN-GDPIPRLEDKDNHTI 402 Query: 394 DSLRYSVER 402 D+ RY+ ER Sbjct: 403 DATRYAFER 411 >gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795632;genbank:gi:28876409;genbank:GeneID :1257943 Length = 273 Score = 112 bits (281), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 17/251 (6%) Query: 160 QIFLMFNPVS-KLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPA 218 + F +NP K +WV K + +P N + S+Y+DN F+ + E R+ Sbjct: 12 KFFYTYNPPKRKQSWVNKKYESQFQP-SNTFVHASTYKDNPFIAKEFIAEAEATRERSER 70 Query: 219 YYKIYALGE-----FATLDKLVFPK-YEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHS 272 Y+ LGE D L F + ++++ + D +R+ G+D+GY DP AF+ Sbjct: 71 RYRWEYLGEAIGSGVVPFDNLRFERITDEQVADFDNIRN-----GIDYGYATDPLAFVRW 125 Query: 273 KIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRN-LGLKR 331 D KK +Y I+EY Q + N ++A + GY +E+ A+SAE KS AEL+N G+KR Sbjct: 126 HYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAELKNEFGIKR 185 Query: 332 ILPTKKGKGSVVQGLQFL--MQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTY 389 I KKG SV G ++L + F I +R EF+N +Q D+D G D Sbjct: 186 IKGVKKGPDSVEFGERWLDDLDFICIDPKRTPNIAREFENIDYQVDRD-GNPKPRLEDKV 244 Query: 390 NHCIDSLRYSV 400 NH ID+ RY++ Sbjct: 245 NHAIDATRYAM 255 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 84.3 bits (207), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 105/421 (24%), Positives = 180/421 (42%), Gaps = 48/421 (11%) Query: 18 NIFEILTN---------YDNFTEVHY---GGGSSGKSHGVIQKVVLKALQDWKYPRRILW 65 NIF++++ DN H GG SGKS V VV + ++D + I Sbjct: 21 NIFDLMSPAFHNIYQRVLDNTAPSHVWMKGGRGSGKSSFVALMVVDEIMKDPQANAVIF- 79 Query: 66 LRKVQSTIKDSLFEDVKDCLINFGI---WD------MCLWNKTDNKVELPNGAVFLFKGL 116 RKV ++ +L + + G+ W M L+ + +E FKG+ Sbjct: 80 -RKVDEGMRTTLLPQYQWAIDQLGVSGAWRTSLQPMMLLYKNPETGLE----QQIRFKGV 134 Query: 117 DNPEKIKSIK---GISDIVMEEASEFTLNDYTQLTLR---LRERKHMNKQIFLMFNPVSK 170 +P+++K+ K G + ++ E ++ ++ + +R + + F ++NP Sbjct: 135 KDPKRVKASKFRVGYAKYLIYEEADEYESEEDFSIVNSSYMRGEGTGDSRAFYLYNPPKY 194 Query: 171 L-----NWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYAL 225 NWV E + + + + ++L ++ L+ ++NP Y+ L Sbjct: 195 KGHWLNNWVDVIRDEPSQYVHHSTFIPIALHHPEWLGSTWLESARLVRDKNPNRYEWEFL 254 Query: 226 GEFATLDKLVFPKYEKRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIE 285 G VFP + I D + L Y G D GY DPS ++ D ++ +YI + Sbjct: 255 GRNVNTGNEVFPNAVQEHITFDMIDGLRPYEGFDEGYTADPSVWLRVFYDEQRDTVYITD 314 Query: 286 EYV----KQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGS 341 E V K L +I NV Q G + + DSA + + E+R+LG+ L K S Sbjct: 315 ELVMKRYKTKALAKDILNV--QEG-SYNIVRGDSANPRVLDEMRDLGVN-ALAVSKSPNS 370 Query: 342 VVQGLQFLM-QFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSV 400 V G +L + +I++D +C T EF +Y D G + D NH ID+ RY++ Sbjct: 371 VPHGTNWLANRIKIVIDFKCPNTWREFSSYALLPDG-VGNRKHGFPDKDNHTIDTTRYAL 429 Query: 401 E 401 E Sbjct: 430 E 430 >gi|2819|lcl|protein:vir:105705 Length: 439 # NCBI annotation: gp2 # Family: family:all:54 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224140;genbank:gi:62362215;genbank:GeneID :3342458 Length = 439 Score = 83.6 bits (205), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 107/408 (26%), Positives = 181/408 (44%), Gaps = 49/408 (12%) Query: 34 YGGGSSGKSHGVIQKVVLKALQ--DWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIW 91 +GG S K+ +KA Q + IL R+ +++++S E+VK + + W Sbjct: 28 HGGRGSAKTRTFALMTAVKAYQAAEANISGVILCAREYMNSLEESSMEEVKQAIRSVA-W 86 Query: 92 DMCLWNKTDNKVELPNGAV-FLFKGL-DNPEKIKSIKGISDIVMEEASEFTLNDYTQLTL 149 ++ + + N V ++F GL N + IKS I ++EA + + +L Sbjct: 87 LDDYFDIGEKYIRTKNRKVSYVFCGLRHNLDSIKSKARILVAWVDEAESVSSTAWKKLRP 146 Query: 150 RLRERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDE-MTRQN 208 +RE +I++ +NP + K F ++ P ++ MI + +Y DN + + + Sbjct: 147 TVREE---GSEIWVTWNPEKDGSATDKLFRKN--PPKSSMIVEMNYVDNPWFPAVLEEER 201 Query: 209 LELLANRNPAYYKIYALGEF-------ATLDKLVFPKYEKRLINKDELRHLPSYFGLDFG 261 E LAN + A Y G + +K V +E L K E R L FG DFG Sbjct: 202 QEDLANLDYADYAWIWEGAYLENSDKQVLANKYVVQSFEDNLWRKSE-RLL---FGADFG 257 Query: 262 YVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIAN--------VIKQLG-------- 305 + DPS I ++ + LYI E G+ D++ KQL Sbjct: 258 FAKDPSTLI--RMFILDNNLYIEYEAYGNGVELDDMWKFYAGKTDATPKQLKDWKVTDDT 315 Query: 306 -------YAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQF-EIIVD 357 K I AD++ ++I+ ++ G I +K +GSV G+ FL F +II+ Sbjct: 316 KFPGIPEARKWPIKADNSRPETISHIKGQGFN-ISAAQKWQGSVEDGITFLRGFKKIIIH 374 Query: 358 ERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYR 405 RC +T +E Y+++ D+ TGE D NHC D +RY ++ + + Sbjct: 375 PRCKETAKEARLYSYKTDRITGEVLPIIEDKNNHCWDGIRYGLDGYIK 422 >gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112076;genbank:gi:13559866;genbank:GeneID :921009 Length = 470 Score = 74.7 bits (182), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 15/221 (6%) Query: 26 YDNFTEVHY-----GGGSSGKSHGVIQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFED 80 ++ F E H GG SGKS + + +V A + P RIL R++Q++I DS+ Sbjct: 8 FEPFIEAHRYKVAKGGRGSGKSWAIARLLVEAAR---RQPVRILCARELQNSISDSVIRL 64 Query: 81 VKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGL-DNPEKIKSIKGISDIVMEEASEF 139 ++D + G + + L A F+F G+ +NP KIKS++GI +EEA Sbjct: 65 LEDTIEREG-YSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGIDICWVEEAEAV 123 Query: 140 TLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNK 199 T + L +R+ +I++ FNP + L+ Y+ F + P +++ + +Y DN Sbjct: 124 TKESWDILIPTIRKP---FSEIWVSFNPKNILDDTYQRFVVN--PPDDICLLTVNYTDNP 178 Query: 200 FLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 E+ R +E RNP Y+ LGE + + K E Sbjct: 179 HFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKRE 219 >gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: gene 2 protein # Family: family:all:54 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958178;genbank:gi:41057280;genbank:GeneID :2716664 Length = 470 Score = 74.7 bits (182), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 15/221 (6%) Query: 26 YDNFTEVHY-----GGGSSGKSHGVIQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFED 80 ++ F E H GG SGKS + + +V A + P RIL R++Q++I DS+ Sbjct: 8 FEPFIEAHRYKVAKGGRGSGKSWAIARLLVEAAR---RQPVRILCARELQNSISDSVIRL 64 Query: 81 VKDCLINFGIWDMCLWNKTDNKVELPNGAVFLFKGL-DNPEKIKSIKGISDIVMEEASEF 139 ++D + G + + L A F+F G+ +NP KIKS++GI +EEA Sbjct: 65 LEDTIEREG-YSAEFEIQRSMIRHLGTNAEFMFYGIKNNPTKIKSLEGIDICWVEEAEAV 123 Query: 140 TLNDYTQLTLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNK 199 T + L +R+ +I++ FNP + L+ Y+ F + P +++ + +Y DN Sbjct: 124 TKESWDILIPTIRKP---FSEIWVSFNPKNILDDTYQRFVVN--PPDDICLLTVNYTDNP 178 Query: 200 FLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYE 240 E+ R +E RNP Y+ LGE + + K E Sbjct: 179 HFPEVLRLEMEECKRRNPTLYRHIWLGEPVSASDMAIIKRE 219 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 68.2 bits (165), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 83/329 (25%), Positives = 141/329 (42%), Gaps = 40/329 (12%) Query: 97 NKTDNKVELPNGAVFLFKGLDNPEKIKSIKGISD--IVMEEASEFTLNDYTQLTLRLRER 154 N D ++EL NG++F L + + S G S I+ +EA+ ++D R++ R Sbjct: 118 NAKDKEIELANGSLF---KLASAAQADSAVGRSYDFIIFDEAA---ISDVGGDAFRVQLR 171 Query: 155 KHMNK---QIFLMFNPVSKLNWVYKYFFEHG--EPMENVMIRQSSYRDNKFLDEMTRQNL 209 ++K + + P NW +K F+ +G + + N + +YRDN D + Sbjct: 172 PTLDKPNSKALFISTPRGG-NW-FKEFYAYGFDDTLPNWVSIHGTYRDNPRADLNDIEEA 229 Query: 210 ELLANRNPAYYKIYALGEFATLDKLVFPKYEKRLINKD--ELRHL-------PSYFGLDF 260 ++N Y++ +F+ + +F + KD +RH + G+D Sbjct: 230 RRTVSKN--YFRQEYEADFSVFEGQIFDTFNAIDHVKDLKGMRHFFKDDEAFETLLGIDV 287 Query: 261 GYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQL--GYAKEEITADSAEQ 318 GY DP+A + K Y++EEY + + A I+ Y + I DSA Sbjct: 288 GY-RDPTAVLTIKYHYDTDTYYVLEEYQQAEKTTAQHAAYIQHCIDRYKVDRIFVDSAA- 345 Query: 319 KSIAELR-NLGLKRILPTKKGKGSVVQGLQFLM----QFEIIVDERCFKTIEEFDNYTWQ 373 A+ R +L + + + K SV+ GL L Q +IIVD C I NY W Sbjct: 346 ---AQFRQDLAYEHEIASAPAKKSVLDGLACLQALFQQGKIIVDASCSSLIHALQNYKWD 402 Query: 374 KDKDTGEYTNEPV--DTYNHCIDSLRYSV 400 + + + E D +H D+LRY + Sbjct: 403 FQEGEEKLSREKPRHDANSHLCDALRYGI 431 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 67.4 bits (163), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 148/326 (45%), Gaps = 37/326 (11%) Query: 95 LWNKTDNKVELPNGAV----FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLT 148 ++++TDN +E+ G V ++F G D + I+G+ + I +E + + Q T Sbjct: 100 VYHRTDNLIEITKGDVSNDFYIFGGKDESSQ-DLIQGLTLAGIFFDEVALMPESFVNQGT 158 Query: 149 LRLRERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQN 208 R + + NP +W + + E +N++ DN L E ++ Sbjct: 159 GRCSV---TGSKWWFNCNPDGPYHWFKVNWIDKAET-KNMLYLHFDMDDNLSLSENIKKR 214 Query: 209 LELLANRNPAYYKIYALGEFATLDKLVFPKY--EKRLINK-DELRHLPSYFGLDFGYVND 265 + +Y+ Y G + + +V+ + +K +++ E+ L Y +D+G N Sbjct: 215 YR--SQYQGVFYQRYIQGLWTVAEGIVYDMFSKDKHVVSTLPEMSKLGKYVSVDYGTQN- 271 Query: 266 PSAFIHSKIDVKKKKLYIIEEYVKQGM------LNDEIAN-VIKQLGYAK-EEITADSAE 317 + F+ + D+ K Y+ EY G N E A+ + LG + I D + Sbjct: 272 ATVFLLWEKDIIGK-YYLTREYYYSGRDENVQKTNAEYADDLTAWLGDTNIDRIIIDPSA 330 Query: 318 QKSIAELRNLGLKRILPTKKGKGSVVQGLQF----LMQFEIIVDERCFKTIEEFDNYTW- 372 IAEL+ G K KK + +V++G++F L Q +I V E C T++EF Y W Sbjct: 331 ASFIAELKKRGYK----IKKARNNVLEGIRFVGSMLGQEKIAVHESCVNTLKEFHAYVWD 386 Query: 373 QKDKDTGEYTNEPVDTYNHCIDSLRY 398 +K GE ++P+ ++H +D+LRY Sbjct: 387 EKASANGE--DKPIKQFDHAMDALRY 410 >gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240228;genbank:gi:66395894;genbank:GeneID :5133253 Length = 407 Score = 63.2 bits (152), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 25/263 (9%) Query: 160 QIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAY 219 +I + NP +W+ K + E+ +P ++ Q DN FL++ +++++ + + + Sbjct: 155 RILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIK-ASTPSGMF 213 Query: 220 YKIYALGEFATLDKLVFPKYE--KRLINKDELRHLP--SYF-GLDFGYVNDPS-AFIHSK 273 Y+ G + + D +V+ ++ + I DEL +P YF G+D+GY + S I Sbjct: 214 YERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRG 273 Query: 274 IDVKKKKLYIIEEYVKQGMLNDEIANVIKQL--GYAKEEITADSAEQKSIAELRNLGLKR 331 ID Y IEE+ Q D+ + K + Y D+A + I E R L+ Sbjct: 274 ID---GNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHRLRA 330 Query: 332 ILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDN----YTWQKDKDTGEYTNEPVD 387 I K V + + Q +++V + ++ F Y W EP+ Sbjct: 331 INADKSKLSGVEEVAKLFKQNKLLV---LYDNMDRFKQEVFKYVWHPT------NGEPIK 381 Query: 388 TYNHCIDSLRYSVERFYRPVRKR 410 ++ +DSLRY++ +P R R Sbjct: 382 EFDDVLDSLRYAIYTHTKPERLR 404 >gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004370;genbank:gi:122891825;genbank:Ge neID:4712368 Length = 407 Score = 63.2 bits (152), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 25/263 (9%) Query: 160 QIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAY 219 +I + NP +W+ K + E+ +P ++ Q DN FL++ +++++ + + + Sbjct: 155 RILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIK-ASTPSGMF 213 Query: 220 YKIYALGEFATLDKLVFPKYE--KRLINKDELRHLP--SYF-GLDFGYVNDPS-AFIHSK 273 Y+ G + + D +V+ ++ + I DEL +P YF G+D+GY + S I Sbjct: 214 YERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRG 273 Query: 274 IDVKKKKLYIIEEYVKQGMLNDEIANVIKQL--GYAKEEITADSAEQKSIAELRNLGLKR 331 ID Y IEE+ Q D+ + K + Y D+A + I E R L+ Sbjct: 274 ID---GNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHRLRA 330 Query: 332 ILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDN----YTWQKDKDTGEYTNEPVD 387 I K V + + Q +++V + ++ F Y W EP+ Sbjct: 331 INADKSKLSGVEEVAKLFKQNKLLV---LYDNMDRFKQEVFKYVWHPT------NGEPIK 381 Query: 388 TYNHCIDSLRYSVERFYRPVRKR 410 ++ +DSLRY++ +P R R Sbjct: 382 EFDDVLDSLRYAIYTHTKPERLR 404 >gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150161;swissprot:trembl:q94m50;genbank:gi :15088772;goa:Q94M50;uniprot:Q94M50;genbank:GeneID:95597 6 Length = 436 Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 112/407 (27%), Positives = 178/407 (43%), Gaps = 53/407 (13%) Query: 35 GGGSSGKSHGVIQKVVLKALQDWKY-----PRRILWLRKVQSTIKDSLFEDVKDCLINFG 89 GG +S KS ++ K+ + +Y I+ +RKV +TI+DS+F V L FG Sbjct: 28 GGRNSFKSSVIVLKLAYMMI---RYIIAGEAANIVVIRKVANTIRDSVFNKVWWALNLFG 84 Query: 90 IWDMCLWNKTDNK-VELPNGAVFLFKGLDNPEKIKS--IKGISDIVMEEASEFT-LNDYT 145 I + + K V G+ F F G D+ +K+KS I I + EEA+EF D+ Sbjct: 85 IAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDIGNIIPVWYEEAAEFNDQEDFD 144 Query: 146 QLTLRLRERKHMNK---QIFLMFNPV-SKLNWVYKYFFEHGEPMENVMIRQSSYRDNK-- 199 Q + +KH Q F +NP + +W+ ++ FE + +N + S+Y D++ Sbjct: 145 QSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEW-FESIKTNKNYLAHSSTYLDDELG 203 Query: 200 FLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEKRLINK----DELRHLPSY 255 F+ E +++E + + YY+ LGE L V+ I+ D+L + Sbjct: 204 FVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSMFHAIDACPSDDKLIGIS-- 261 Query: 256 FGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEY-------VKQG--MLNDEI----ANVIK 302 F LD G+ +A I K K + + Y VK+ L+ EI +VI+ Sbjct: 262 FALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMRSVIE 321 Query: 303 QLGYAKEEITADSAEQKSIAELRN-----LGLKRILPTKKGKGSVVQGLQFLM---QFEI 354 + + T DSAE LRN GLK K K +++ Q L+ +F Sbjct: 322 KYRVQALQYTIDSAE----GALRNQMFLDFGLKWHPVAKLRKVTMIDSFQSLLAQGRFYY 377 Query: 355 IVDERCFKTIEEFDNYTWQKDKDTGEYTNEPV-DTYNHCIDSLRYSV 400 + E IEE Y W D+ T + N V +H D+ +Y V Sbjct: 378 LNTENNKIFIEEHKMYRW--DEKTIKSDNPSVIKEDDHTCDTTQYFV 422 >gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: conserved hypothetical protein ORF004 # Family: family:all:54 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294421;genbank:gi:149408318;genbank:Ge neID:5237186 Length = 460 Score = 56.6 bits (135), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 10/174 (5%) Query: 31 EVHYGGGSSGKSHGVIQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGI 90 +V YGG +S KSH V A Y + L R+ Q+ I +S++ +KD + N Sbjct: 19 KVIYGGRASSKSHDAGGIAVYLAAN---YRLKFLCARQFQNRISESVYTLIKDKIENSEY 75 Query: 91 WDMCLWNKTDNKVELPNGAVFLFKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQLTL 149 ++ K K + G+ FLF G+ N +IKS +GI + +EEA T + + Sbjct: 76 NGEFIFTKNSIKHKR-TGSEFLFYGIARNLSEIKSTEGIDILWLEEAHYLTQEQWEVIEP 134 Query: 150 RLRERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDE 203 +R+ N +I+++FNP ++VY+ F +P ++ ++ ++ +N FL E Sbjct: 135 TIRKE---NSEIWIIFNPNEVTDFVYQNFVV--KPPKDAFVKMINWNENPFLSE 183 >gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468388;genbank:gi:157324962;genbank:Ge neID:5601395 Length = 443 Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 19/216 (8%) Query: 35 GGGSSGKSHGVIQKVVLKALQDWKYP-RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDM 93 GG SS KS + K+V K + + P ++ LRKV +T+ S+++ +K L G+ D Sbjct: 40 GGRSSMKSSVISLKLVEKKMAN---PMSNMVCLRKVANTLYKSVYQQIKWALYEMGVADQ 96 Query: 94 CLWNKTDNKVELPN-GAVFLFKGLDNPEKIKSIK----GISDIVMEEASEF---TLNDYT 145 + K+ ++ G F F G D+P K+KS+K +SD+ EE +EF T D Sbjct: 97 FNFGKSPMEIIHKEWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWFEELAEFSGVTDIDVV 156 Query: 146 QLTLRLRERKHMNKQ--IFLMFNPV-SKLNWVYKYFFEHGEPMENVMIRQSSYRDNK--F 200 + T +RE ++ I++ FNP + WV +Y + ++ +I ++Y D++ F Sbjct: 157 EDTF-IREDLPQGQEVTIYMSFNPPRNPYEWVNEY-VDSKRSDDDYLIHHTTYLDDEKGF 214 Query: 201 LDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVF 236 L + + +E + YY+ LGE L V+ Sbjct: 215 LSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY 250 >gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463463;swissprot:trembl:q9t1c1;genbank:gi :16798785;goa:Q9T1C1;uniprot:Q9T1C1;genbank:GeneID:92238 4 Length = 443 Score = 53.5 bits (127), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 19/216 (8%) Query: 35 GGGSSGKSHGVIQKVVLKALQDWKYP-RRILWLRKVQSTIKDSLFEDVKDCLINFGIWDM 93 GG SS KS + K+V K + + P ++ LRKV +T+ S+++ +K L G+ D Sbjct: 40 GGRSSMKSSVISLKLVEKKMAN---PMSNMVCLRKVANTLYKSVYQQIKWALYEMGVADQ 96 Query: 94 CLWNKTDNK-VELPNGAVFLFKGLDNPEKIKSIK----GISDIVMEEASEF---TLNDYT 145 + K+ + V G F F G D+P K+KS+K +S + EE +EF T D Sbjct: 97 FKFGKSPMEIVHKTWGTGFYFSGCDDPAKLKSMKIPVGYVSGLWFEELAEFSGVTDIDVV 156 Query: 146 QLTLRLRERKHMNKQ--IFLMFNPV-SKLNWVYKYFFEHGEPMENVMIRQSSYRDNK--F 200 + T +RE ++ I++ FNP + WV +Y + ++ +I ++Y D++ F Sbjct: 157 EDTF-IREDLPQGQEVTIYMSFNPPRNPYEWVNEY-VDSKRSDDDYLIHHTTYLDDEKGF 214 Query: 201 LDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVF 236 L + + +E + YY+ LGE L V+ Sbjct: 215 LSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY 250 >gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: TerL-like protein # Family: family:all:54 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039811;genbank:gi:126011061;genbank:Ge neID:4818267 Length = 459 Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 20/190 (10%) Query: 34 YGGGSSGKSHGVIQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDM 93 YGG +S KSH V A Y + L R+ Q+ I +S++ +K G D Sbjct: 22 YGGRASSKSHDAAGFAVYLARN---YTVKFLCARQFQNKISESVYTLIK------GKIDA 72 Query: 94 CLWNK-----TDNKVELPNGAVFLFKGLD-NPEKIKSIKGISDIVMEEASEFTLNDYTQL 147 W K + GA FLF G+ N +IKS +G+ + +EEA T + + Sbjct: 73 AGWTKEFDVTISSIRHKKTGAEFLFYGIARNLNEIKSTEGVDILWLEEAQYLTEEQWNVI 132 Query: 148 TLRLRERKHMNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQ 207 +R QI+L++NP +++Y+ F + P + + +Q ++ +N FL + + Sbjct: 133 NPTIRRE---GSQIWLIWNPDQYTDFIYQNFVVN--PPADCLSKQINWTENPFLSDTMLK 187 Query: 208 NLELLANRNP 217 + R+P Sbjct: 188 VIYDEYQRDP 197 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 52.4 bits (124), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 31/323 (9%) Query: 111 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPV 168 F+F G D + ++GI + +E + + Q T R +++ NP Sbjct: 114 FIFGGKDEASQ-DLVQGITLAGFFFDEVALMPQSFVNQATARCSV---TGSKMWFNCNPS 169 Query: 169 SKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGEF 228 +W + + + + I + DN LD +T E + + +Y+ Y G + Sbjct: 170 GPFHWFKLNWIDQMKDKRALRI-HFTMHDNPSLDSVTINRYERMYS--GVFYQRYIQGLW 226 Query: 229 ATLDKLVFPKYEKRLINKDEL-RHLPSYF-GLDFGYVNDPSAFIHSKIDVKKKKLYIIEE 286 + +++ ++K + +EL H Y+ D+G +N P+AF+ Y+++E Sbjct: 227 VMSEGVIYDNFDKDTMVVNELPNHFEKYYVSCDYGTLN-PTAFL--LWGRNHGVWYLVKE 283 Query: 287 YVKQGML------NDEIANVIKQ-LGYAKEEITADSAEQKSIAELRNLGLKRILPTKKGK 339 Y G ++E + +K+ LG + E+ D + LR G K +K K Sbjct: 284 YYYSGRTTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFK----VRKAK 339 Query: 340 GSVVQGLQF----LMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDS 395 V+ G++ + + +I C +E +Y W DK ++PV ++H D+ Sbjct: 340 NDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWD-DKAAEHGEDKPVKQHDHACDA 398 Query: 396 LRYSVER-FYRPVRKRTNVSSKV 417 +RY V Y+ V + V +V Sbjct: 399 MRYFVYTIIYKKVTAKVTVRPRV 421 >gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: putative phage terminase large subunit B # Family: family:all:54 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529870;genbank:gi:90592610;genbank:GeneID :3974524 Length = 409 Score = 48.1 bits (113), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 74/314 (23%), Positives = 139/314 (44%), Gaps = 33/314 (10%) Query: 107 NGAVFLFKGLD-NPEKIKSIKGISDI--------VMEEASEFTLNDYTQLTLRLRERKHM 157 +G LF G+D P SI+G+ I + EAS T + + ++ R Sbjct: 96 HGHYHLF-GIDIVPSYTGSIRGVGFIRGMTSYGAYVNEASLATHDVFQEILQRCSIE--- 151 Query: 158 NKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNP 217 +I NP +W+ + ++ +P + + DN FL + ++++ R Sbjct: 152 GARIICDTNPDIPTHWLKTDYIDNHDPKARIKSFTFTIDDNTFLSKDYVESIKAATPRG- 210 Query: 218 AYYKIYALGEFATLDKLVFPKYEK--RLINKDELRH-LPSYFGLDFGYVNDPSAFIHSKI 274 +Y LG++ T D +V+ + K +I K+ + L Y G+D+GY + P+ I Sbjct: 211 MFYDRGILGQWVTGDGIVYQDFNKDTMVIPKNRVPDGLDYYVGVDWGYEH-PNPIILLG- 268 Query: 275 DVKKKKLYIIEEYVKQGMLNDEIANVIKQLG--YAKEEI-TADSAEQKSIAELRNLGLKR 331 D K Y++E+Y ++ + V + L + + I ADSA ++ E ++ GL Sbjct: 269 DDKDGNTYVLEDYTQKHKFINYWVKVAQNLQTRFGRNLIFYADSARPDNVNEFQSNGLNC 328 Query: 332 ILPTKKGKGSVVQGLQFLMQFE-----IIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPV 386 I K +V+ G++ + + +VD ++E Y W D+ TG E Sbjct: 329 INANK----NVLPGIECVARKMREGKFYVVDTASSGLLDEIYQYAW--DESTGLPLKEND 382 Query: 387 DTYNHCIDSLRYSV 400 +N +D++RY++ Sbjct: 383 VRHNDRLDAIRYAI 396 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 47.0 bits (110), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 82/334 (24%), Positives = 155/334 (46%), Gaps = 54/334 (16%) Query: 101 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 155 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 89 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 141 Query: 156 HMNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 210 H +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 142 HKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 198 Query: 211 LLANRNPAYY----KIYALGEFATLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 261 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 199 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYITEEEFKTKQIKRKYAGVDWG 256 Query: 262 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAKEEITADSAE 317 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 257 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHG--DILFYCDTAR 312 Query: 318 QKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQ-FEI----IVDERCFKTIEEFDNYTW 372 + I R +K K +V+ G++ + + F++ I+ E+ EE NY W Sbjct: 313 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKISIIKEKVSLFKEEIYNYVW 368 Query: 373 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 406 + + D EPV + +D+LRY+V +P Sbjct: 369 KDNAD------EPVKLNDDTLDALRYAVYTANKP 396 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 47.0 bits (110), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 82/334 (24%), Positives = 152/334 (45%), Gaps = 54/334 (16%) Query: 101 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 155 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 89 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 141 Query: 156 HMNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 210 H +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 142 HKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 198 Query: 211 LLANRNPAYY----KIYALGEFATLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 261 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 199 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYITEEEFKTKQIKRKYAGVDWG 256 Query: 262 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAKEEITADSAE 317 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 257 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHG--DILFYCDTAR 312 Query: 318 QKSIAELRNLGLKRILPTKKGKGSVVQGLQ-----FLMQFEIIVDERCFKTIEEFDNYTW 372 + I R +K K +V+ G++ F + I+ E+ EE NY W Sbjct: 313 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVW 368 Query: 373 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 406 + + D EPV + +D+LRY+V +P Sbjct: 369 KDNAD------EPVKLNDDTLDALRYAVYTANKP 396 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneID :3197313 Length = 453 Score = 46.2 bits (108), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 39/292 (13%) Query: 2 TKVKLNFNKPSNVFNRNIFEILTNYDNFTEVHYGGGSSGKSHGVIQKVV----LKALQDW 57 TK K+ FN N+ N + E+ T+ + + GG +S KS + K+V L L+ Sbjct: 5 TKKKVMFNVQENI-NPHFKEVWTSSKPYN-ILKGGRNSFKSSVIALKLVFMMLLYILKGE 62 Query: 58 KYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELP-NGAVFLFKGL 116 K ++ +RKV +TI+DS+F ++ + FG+ + K+ G+ F F G Sbjct: 63 K--ANVVVIRKVGNTIRDSVFNKIQWAIKLFGLTRRFKPTVSPFKITHKRTGSTFYFYGQ 120 Query: 117 DNPEKIKSIKGISDIVM------EEASEFTLNDYTQLTLRLRERKHMNK--QIFLMFNPV 168 D+ +K+KS I DI+ E + D + +T +R++ + + Q F +NP Sbjct: 121 DDFQKLKS-NDIEDIIAVWYEEAAEFASEEEFDQSNVTF-MRQKHPLAEFVQFFWSYNPP 178 Query: 169 SKLNWVYKYFFEHGEPM---ENVMIRQSSYRDNK--FLDEMTRQNLELLANRNPAYYKIY 223 Y + E + M E+ ++ +SSY D++ F+ +++E + N + YY+ Sbjct: 179 RN---PYHWINEWADKMVGEEDYLVHESSYLDDQLGFVTGQMLKDIERIKNNDHDYYRYI 235 Query: 224 ALGEFATLDKLVFPKYEKRLINKDELRHLPS-------YFGLDFGYVNDPSA 268 LGE L V Y L L LPS ++ +D G+ + +A Sbjct: 236 YLGEPVGLGTNV---YNMNLFK--PLDQLPSDDRVIALFYSVDGGHAHSATA 282 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 43.9 bits (102), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 155/334 (46%), Gaps = 54/334 (16%) Query: 101 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 155 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 90 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 142 Query: 156 HMNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 210 + +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 143 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 199 Query: 211 LLANRNPAYY----KIYALGEFATLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 261 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 200 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWG 257 Query: 262 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAKEEITADSAE 317 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 258 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHG--DILFYCDTAR 313 Query: 318 QKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQ-FEI----IVDERCFKTIEEFDNYTW 372 + I R +K K +V+ G++ + + F++ I+ E+ EE NY W Sbjct: 314 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVW 369 Query: 373 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 406 + + D EPV + +D+LRY+V +P Sbjct: 370 KDNAD------EPVKLNDDTLDALRYAVYTANKP 397 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 43.9 bits (102), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 81/334 (24%), Positives = 155/334 (46%), Gaps = 54/334 (16%) Query: 101 NKVELPNGAVFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQL-TLRLRER----K 155 N V++ V++F G N + K +G + A F LN+ T L + ++E Sbjct: 92 NAVKIFGNKVYVFDG-QNSDAWKKARGFT-----SAGAF-LNEGTALHNMFIKEVFSRCS 144 Query: 156 HMNKQIFLMFNPVSKLNWVYK-YFFEHGEPMENVMIRQSSYR----DNKFLDEMTRQNLE 210 + +I + NP + ++ V K Y + G+ + N + +++ DN FLDE + +E Sbjct: 145 YKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGRLNIKAFQFTLFDNTFLDE---EYIE 201 Query: 211 LLANRNPAYY----KIYALGEFATLDKLVFPKYEKRL--INKDELRHLP---SYFGLDFG 261 + P IY G++ + + +V+ +++++ I ++E + Y G+D+G Sbjct: 202 SIIASTPTGMFTDRDIY--GKWVSAEGVVYKDFKEKVHYIKEEEFKTKQIKRKYAGVDWG 259 Query: 262 YVNDPSAFIHSKIDVKKKKLYIIEEYV-KQGMLNDEIA---NVIKQLGYAKEEITADSAE 317 Y + S + ++ D K Y+IEE+ + ++D +A VIK+ G D+A Sbjct: 260 YEHYGSIMVVAE-DFDGNK-YVIEEHAHRHKEIDDWVAIAKGVIKRHG--DILFYCDTAR 315 Query: 318 QKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQ-FEI----IVDERCFKTIEEFDNYTW 372 + I R +K K +V+ G++ + + F++ I+ E+ EE NY W Sbjct: 316 PEHIERFRREKIKARYADK----AVIAGIEVISRLFKLNKIFIIKEKVSLFKEEIYNYVW 371 Query: 373 QKDKDTGEYTNEPVDTYNHCIDSLRYSVERFYRP 406 + + D EPV + +D+LRY+V +P Sbjct: 372 KDNAD------EPVKLNDDTLDALRYAVYTANKP 399 >gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp411 # Family: family:all:54 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056675;genbank:gi:9635008;genbank:GeneID: 1262679 Length = 411 Score = 43.5 bits (101), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/218 (21%), Positives = 94/218 (43%), Gaps = 31/218 (14%) Query: 197 DNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEKRLINKDELRHLPSYF 256 DN FL + +++ + + +Y LG + + ++ Y+ ++ DEL + YF Sbjct: 189 DNTFLSKRYIDSIKAVTPKGK-FYDRDILGHWTVAEGAIYADYDSKIHVVDELPEMKRYF 247 Query: 257 -GLDFGYVNDPSAFIHSK--------IDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYA 307 G+D+GY + S I + +D + + I+ +V+Q I Y Sbjct: 248 GGIDWGYTHYGSIVIVGEGVDNNFYLVDGVRAQFKEIDWWVEQARKLTGI--------YG 299 Query: 308 KEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQF---EIIVDERCF--K 362 ADSA + +A N G SV+ G++ + + + + +R F + Sbjct: 300 NIPFYADSARPEHVARFENEGFD----ISNANKSVIAGIELIAKLFKEQKLYVKRGFVPR 355 Query: 363 TIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSV 400 +E Y W+++ +EP+ ++ +DS+RY++ Sbjct: 356 FFDEIYQYRWKENST----KDEPLKEFDDVLDSVRYAI 389 >gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695104;genbank:gi:23455873;genbank:GeneID :955606 Length = 411 Score = 43.5 bits (101), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 21/213 (9%) Query: 197 DNKFLDEMTRQNLELLANRNPAYYKIYALGEFATLDKLVFPKYEKRLINKDELRHLPSYF 256 DN FL + +++ A +Y LG + + ++ Y+ ++ DEL + YF Sbjct: 189 DNTFLSKRYIDSIKA-ATPKGKFYDRDILGLWTVAEGAIYADYDSKIHVVDELPEMKRYF 247 Query: 257 -GLDFGYVNDPSAFIHSK-IDVKKKKLYIIEEYVKQGMLNDEIANVIKQLG--YAKEEIT 312 G+D+GY + S I + +D Y+++ Q D ++L Y Sbjct: 248 GGIDWGYTHYGSIVIVGEGVD---NNFYLVDGVAAQFKEIDWWVEQARKLTGIYGNIPFY 304 Query: 313 ADSAEQKSIAELRNLGLKRILPTKKGKGSVVQGLQFLMQF---EIIVDERCF--KTIEEF 367 ADSA + +A N G + K SV+ G++ + + + + +R F + +E Sbjct: 305 ADSARPEHVARFENEGFDIMNANK----SVIAGIELIAKLFKEKKLYVKRGFVPRFFDEI 360 Query: 368 DNYTWQKDKDTGEYTNEPVDTYNHCIDSLRYSV 400 Y W+++ +EP+ ++ +DS+RY++ Sbjct: 361 YQYRWKENST----KDEPLKEFDDVLDSVRYAI 389 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 36.2 bits (82), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 8/71 (11%) Query: 343 VQGLQF-LMQFEIIVDERCFKTIEE----FDNYTWQKDKDT---GEYTNEPVDTYNHCID 394 QG++ + + + ++ ER + +E+ +D+Y+W ++ E + +PVD NH +D Sbjct: 364 AQGIEVGIERMQSLLSERRYLLVEQPNDQYDHYSWLQEIGMYVRDENSGKPVDKNNHAMD 423 Query: 395 SLRYSVERFYR 405 + RY+ FYR Sbjct: 424 TSRYATNYFYR 434 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/336 (22%), Positives = 130/336 (38%), Gaps = 64/336 (19%) Query: 113 FKGLDNPEKIKSIKGIS--DIVMEEASEFTLNDYTQLTLR----LRERKHMNKQIFLMFN 166 +KG + +I G+S +V E + + D+ Q R + R H+ N Sbjct: 53 YKGGGKVNSVGAITGMSLGSVVFCEINLLHM-DFIQECFRRTWAAKLRYHLAD-----LN 106 Query: 167 PVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALG 226 P + + V K F+ ++N + DN L +QN+ +NP YK LG Sbjct: 107 PPAPQHPVIKDVFD----VQNTRWTHWTMDDNPILTAERKQNIINSLKKNPYLYKRDVLG 162 Query: 227 EFATLDKLVFPKY--EKRLINKDELRHLPSYFGLDFGY---------------------- 262 + +++ + EK +++ + YF D G Sbjct: 163 QRVMPQGVIYGLFDTEKNVLDALIGEPVEMYFCADGGQSDATSMSCNIVTRVRDNGRISF 222 Query: 263 -VNDPSAFIHSKID---VKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQ 318 +N + + HS D VK Y +E L I +K+ E+ D A + Sbjct: 223 RLNRVAHYYHSGADTGQVKAMSTYALE-------LKVFIDWCVKKYQMRYTEVFVDPACK 275 Query: 319 KSIAELRNLGLKRILPTKKGK--GSVVQGLQF-LMQFEIIVDERCFKTI----EEFDNYT 371 EL LG+ + K S +G++ + + + I+ + F + EE+D+Y Sbjct: 276 SLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLVNHSEEEYDHYH 335 Query: 372 WQKDKDTGEYTNE----PVDTYNHCIDSLRYSVERF 403 + K+ G Y+ + P+D NH +D RYSV F Sbjct: 336 FLKE--IGLYSRDDNGKPIDKDNHAMDEFRYSVNVF 369 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 35.4 bits (80), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/336 (22%), Positives = 130/336 (38%), Gaps = 64/336 (19%) Query: 113 FKGLDNPEKIKSIKGIS--DIVMEEASEFTLNDYTQLTLR----LRERKHMNKQIFLMFN 166 +KG + +I G+S +V E + + D+ Q R + R H+ N Sbjct: 81 YKGGGKVNSVGAITGMSLGSVVFCEINLLHM-DFIQECFRRTWAAKLRYHLAD-----LN 134 Query: 167 PVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALG 226 P + + V K F+ ++N + DN L +QN+ +NP YK LG Sbjct: 135 PPAPQHPVIKDVFD----VQNTRWTHWTMDDNPILTAERKQNIINSLKKNPYLYKRDVLG 190 Query: 227 EFATLDKLVFPKY--EKRLINKDELRHLPSYFGLDFGY---------------------- 262 + +++ + EK +++ + YF D G Sbjct: 191 QRVMPQGVIYGLFDTEKNVLDALIGEPVEMYFCADGGQSDATSMSCNIVTRVRDNGRISF 250 Query: 263 -VNDPSAFIHSKID---VKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQ 318 +N + + HS D VK Y +E L I +K+ E+ D A + Sbjct: 251 RLNRVAHYYHSGADTGQVKAMSTYALE-------LKVFIDWCVKKYQMRYTEVFVDPACK 303 Query: 319 KSIAELRNLGLKRILPTKKGK--GSVVQGLQF-LMQFEIIVDERCFKTI----EEFDNYT 371 EL LG+ + K S +G++ + + + I+ + F + EE+D+Y Sbjct: 304 SLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLVNHSEEEYDHYH 363 Query: 372 WQKDKDTGEYTNE----PVDTYNHCIDSLRYSVERF 403 + K+ G Y+ + P+D NH +D RYSV F Sbjct: 364 FLKE--IGLYSRDDNGKPIDKDNHAMDEFRYSVNVF 397 >gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Terminase, large subunit # Family: family:all:144 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944884;genbank:gi:38707825;genbank:GeneID :2744038 Length = 533 Score = 33.5 bits (75), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 17/205 (8%) Query: 51 LKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNKVELPNGAV 110 L+ ++D Y ++ R+ + ++ L+ K FG + ++ + P+GA Sbjct: 108 LRFIEDPNY--NAVYFRRNTTQLQGGLWPAAKKLFGKFG----GIPHEQKMTITFPSGAT 161 Query: 111 FLFKGLDNPEKIKSIKGI--SDIVMEEASEFTLNDYTQLTLRLRERKHMNKQIFLMFNPV 168 F L+ + + +GI S I +E + F+ + + L RLR + + + NP Sbjct: 162 IKFTYLELEKHAEGHQGIEYSAIYFDEGTHFSASQISYLQTRLRSGAEGDSYMKISMNPD 221 Query: 169 SK---LNWVYKYFFEHG--EPMENVMIRQSSYRDNKFLDEMTRQN-LELLANRNPAYYKI 222 +WV + E G +P + IR D + + R LE+ P Y Sbjct: 222 RDHFIYDWVEPFLDEEGYPDPEKCGRIRWYVMNDGVMVSDWERDKILEMFPLEIPQTYTF 281 Query: 223 YA--LGEFATLDKLVFPKYEKRLIN 245 + + + LD L PKY +L N Sbjct: 282 ISGTIDDNPILDFLE-PKYRGKLEN 305 >gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695170;swissprot:trembl:o03927;genbank:gi :23455799;goa:O03927;interpro:IPR006437;interpro:IPR0067 01;interpro:IPR011441;uniprot:O03927;genbank:GeneID:9555 65 Length = 447 Score = 33.1 bits (74), Expect = 0.006, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 16/167 (9%) Query: 108 GAVFLFKGLDNPEKIKS--IKGISDIVMEEASEFTLND-YTQLTLR-LRERKHMNKQ--I 161 G+ F F G DNP K+KS + + + EEA+ +D + Q +R++ Q + Sbjct: 116 GSSFYFYGADNPYKLKSNIVGDVVAVWYEEAANMKSSDVFDQANPTFIRQKPEWLDQVKV 175 Query: 162 FLMFNPV-SKLNWVYKYFFEHGEPMENVMIRQSSYRDN--KFLDEMTRQNLELLANRNPA 218 F +NP + +W+ ++ + +N +I S YR + F + T +E + Sbjct: 176 FYSYNPPKNPYDWINEW-IDKVSKDDNYLIDTSDYRCDVRGFTSKQTLDLIEQYKKNDYE 234 Query: 219 YYKIYALGEFATLDKLVF-PKYEKRL---INKDELRHLPSYFGLDFG 261 YY+ LGE L ++ P K L + D ++ L YF D G Sbjct: 235 YYRWLYLGEVIGLGTSIYNPSLLKPLEVFPDDDYIKSL--YFSQDSG 279 >gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238487;genbank:gi:66391763;genbank:GeneID :5176917 Length = 195 Score = 32.0 bits (71), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/182 (20%), Positives = 78/182 (42%), Gaps = 20/182 (10%) Query: 228 FATLDKLVFPKYEKRLINKDELRHLPSYFG-LDFGYVNDPS-AFIHSKIDVKKKKLYIIE 285 + + ++ Y+ ++ DEL + FG +D+GY + S + +D Y+++ Sbjct: 3 WTVAEGAIYADYDSKIHVVDELPEMKRCFGGIDWGYTHYGSIVVVGEGVD---GNFYLLD 59 Query: 286 EYVKQGMLNDEIANVIKQLG--YAKEEITADSAEQKSIAELRNLGLKRILPTKKGKGSVV 343 Q D ++L Y ADSA + +A + G SV+ Sbjct: 60 GVAAQFKEIDWWVEQARKLTGIYRNIPFYADSARPEHVARFESEGFD----ISNANKSVI 115 Query: 344 QGLQFLMQF---EIIVDERCF--KTIEEFDNYTWQKDKDTGEYTNEPVDTYNHCIDSLRY 398 G++ + + E + +R F + +E Y W+++ +EP+ ++ +DS+RY Sbjct: 116 AGIELIAKLFKEEKLYVKRGFVPRFFDEIYQYRWKENSTK----DEPLKEFDDVLDSVRY 171 Query: 399 SV 400 ++ Sbjct: 172 AI 173 >gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: terminase # Family: family:all:147 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203458;genbank:gi:15320614;genbank:GeneID :921717 Length = 482 Score = 31.6 bits (70), Expect = 0.016, Method: Compositional matrix adjust. Identities = 90/435 (20%), Positives = 157/435 (36%), Gaps = 81/435 (18%) Query: 27 DNFTEVHYGGGSSGKSHGVIQKVVLKALQDWKYPRRILWLRKVQSTIKDSLFEDVKDCLI 86 + F G SGKS G + ++ +A + P + R+ + + + + ++KD Sbjct: 19 NAFVRCIVGPVGSGKSSGCVVEIPRRAAEQAPGPDGV---RRTRFAVIRNTYRELKDTTR 75 Query: 87 -NFGIWDMCL---WNKTDNKV----ELPNGAVF----LFKGLDNPEKIKSIKG--ISDIV 132 F W L W++ D L +G LF+ LD PE +K + ++ Sbjct: 76 KTFEQWVPALSGRWHEQDFTFTVDKPLSDGTHMHCEVLFRALDRPEHVKKLLSLELTGAY 135 Query: 133 MEEASEFT---LNDYTQLTLRLRERKHMNKQIFLMF---NPVSKLNWVYKYFFEHGEPME 186 + EA + L+ R + F ++ NP +W YK F P Sbjct: 136 VNEARQVPKAILDVLCSRVGRYPSKAQGGATWFGVWMDTNPWHTGHWGYK-LFTKALPEG 194 Query: 187 NVMIRQSSYRDNKFLDEMTRQNLELLANRNPAYYKIYALGE----FATLDKLVFPKYEKR 242 + Q S R + E L N YY+ G+ A +P ++K Sbjct: 195 YELFEQPSGRA---------PDAENLENLPVGYYERQVAGKDAEWVAEYIDSKYPSHDKG 245 Query: 243 LINKDELRHLPSYFGL--------------DFGYVNDPSAFIHSKIDVKKKKLYIIEEYV 288 I D L L + G+ D G + S + + ++ + I++ Y Sbjct: 246 SIYGDLLAALEARGGICTFEHETGSIFTIWDLGRADSTSIWF---MRLRTGGVDIVDHYR 302 Query: 289 KQGMLNDEIANVIKQLGYAK-----EEITADSAEQKSIAELRNLGLKRILPTKKGKGSVV 343 G ++ AK + + A K++ R+ L++ L K G +VV Sbjct: 303 NNGEPLSHYFGLLDGWASAKGYRYLKHVLPHDARAKTLV-TRSSVLEQFL-AKYGPAAVV 360 Query: 344 QGLQF-----------LMQFEIIVDERC--------FKTIEEFDNYTWQKDKDTGEYTNE 384 G Q L++ +I RC +E +Y +Q ++ Y+ E Sbjct: 361 VGPQLSLEDGIAAARALLERDIRFHARCDVPQVAGLESGLEALRSYRYQYNEKLQTYSRE 420 Query: 385 PV-DTYNHCIDSLRY 398 PV D +H D+ RY Sbjct: 421 PVHDWASHDADAFRY 435 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 29.3 bits (64), Expect = 0.10, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 37/198 (18%) Query: 226 GEFATLDKLVFPKYEKR--LINKDELRHLPS----YFGLDFGYVNDPSAFI-----HSKI 274 G FA + LV+ + ++ + + D++R + +G D G+ NDP + H+ Sbjct: 245 GGFAAAEGLVYDAFTRQTHVRDADDVRDRLADDWAMYGYDAGW-NDPRVLLDIRKTHAGQ 303 Query: 275 DVKKKKLYIIEEYVKQGMLNDEI--ANVIKQL-GYAKEEITADSAEQKSIAELRNLGLKR 331 V + Y E ++ + + D+ A+V L G + + A+ E I + R K Sbjct: 304 FVVWDQFYKSESHLAELVDPDDALPADVDPWLAGRPRGRVYAEH-EPAHIEQFR----KA 358 Query: 332 ILPTKKGKGSVVQGL-----QFLMQFE----IIVDERCFKTIEEFDNYTWQKDKDTGEYT 382 P K + S+ G+ + M E ++V +RC + I+EF +Y K+ G Sbjct: 359 NWPAVKAEKSLDGGIDHVRSRLAMDDEGRPGVLVTDRCGELIQEFLSY---KEDHVGTSK 415 Query: 383 NEPVDTYNHCIDSLRYSV 400 + +H +D+LRY++ Sbjct: 416 AQ-----DHALDALRYAL 428 >gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6 # Family: family:all:147 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818544;genbank:gi:29566981;genbank:GeneID :1260231 Length = 581 Score = 26.9 bits (58), Expect = 0.42, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 354 IIVDERCFKTIEEFDNYTWQKDKDTGEYTN-----EPVDTYNHCIDSLRYSVERFYRPVR 408 +++ RC KTI EF Y + K KD T+ P+ +H +++ + Y V Sbjct: 473 MMISTRCPKTIFEFGEYRYPKTKDEQTETSTKRYETPMKLNDHTPEAIGRFLGGMYHAVA 532 Query: 409 KRTNVSSKV 417 + ++V Sbjct: 533 AQMGGGTRV 541 >gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164303;genbank:gi:56692921;genbank:GeneID :3197204 Length = 543 Score = 26.2 bits (56), Expect = 0.68, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 343 VQGLQFLMQFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPVDTYNHC 392 VQ + M+ + + RC K I+ + Y + ++ +TNEP D N C Sbjct: 457 VQQTRKHMKTAYLDETRCAKGIQRLEGYRKKFNRAENRFTNEP-DKSNGC 505 >gi|11995|lcl|protein:vir:79222 Length: 591 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469154;genbank:gi:157834997;genbank:Ge neID:5648803 Length = 591 Score = 25.4 bits (54), Expect = 1.2, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 24/39 (61%) Query: 264 NDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANVIK 302 +DPSA I D +K+ L +IE +K+ + + +++IK Sbjct: 411 SDPSAIIVGGWDTEKQVLNVIEAAIKRRVPSKLESDLIK 449 >gi|16210|lcl|protein:vir:7319 Length: 491 # NCBI annotation: terminase large subunit # Family: family:all:144 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848210;genbank:gi:30387381;genbank:GeneID :2641874 Length = 491 Score = 25.0 bits (53), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 KR++ ++ H P G+D Y A I+ + + K L+ + ++ IA+ Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350 Query: 301 IKQ 303 Q Sbjct: 351 EDQ 353 >gi|5525|lcl|protein:vir:95311 Length: 491 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512256;genbank:gi:89152423;genbank:GeneID :3952979 Length = 491 Score = 25.0 bits (53), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 241 KRLINKDELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEYVKQGMLNDEIANV 300 KR++ ++ H P G+D Y A I+ + + K L+ + ++ IA+ Sbjct: 291 KRVVTAAQVAHAPVIIGVDPAYSGVDDAVIYLRQGLHSKVLWTGNKTTDDLIMAKRIADF 350 Query: 301 IKQ 303 Q Sbjct: 351 EDQ 353 >gi|5978|lcl|protein:vir:95489 Length: 659 # NCBI annotation: Putative large subunit (GpA homolog) of DNA packaging dimer # Family: family:all:140 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293346;genbank:gi:148912767;genbank:Ge neID:5228141 Length = 659 Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 17/27 (62%) Query: 377 DTGEYTNEPVDTYNHCIDSLRYSVERF 403 D+G NE +D + + + +LR S +RF Sbjct: 588 DSGGRRNEALDCFVYALAALRISQQRF 614 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 23.5 bits (49), Expect = 5.1, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 92 DMCLWNKTDNKVELPNGAVFLFKGLDNPEKI----KSIKGISDIVMEEASEFTLNDY 144 D+ WN ++ KVEL A++ K K+ IS I + A T++D+ Sbjct: 501 DIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGTVDDF 557 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 23.1 bits (48), Expect = 5.8, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 92 DMCLWNKTDNKVELPNGAVFLFKGLDNPEKI----KSIKGISDIVMEEASEFTLNDY 144 D+ WN ++ KVEL A++ K K+ IS I + A T++D+ Sbjct: 509 DIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISLISLNPAGRGTVDDF 565 >gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453562;genbank:gi:84662597;genbank:GeneID :5142486 Length = 561 Score = 23.1 bits (48), Expect = 5.9, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 273 KIDVKKKKLYIIEEYVKQGMLNDEIANVIKQLGYAKEEITADSAEQKSIAELRNLGLK 330 + D + KL + + + + N V+K L A++ +T A I EL +GLK Sbjct: 139 RADPELSKLLQVSAHTRT-ITNRVTGAVLKVLAAAEDTVTGSKASVLLIDELHLMGLK 195 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.138 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 198,324 Number of Sequences: 514 Number of extensions: 9633 Number of successful extensions: 190 Number of sequences better than 100.0: 64 Number of HSP's better than 100.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 67 length of query: 425 length of database: 206,069 effective HSP length: 74 effective length of query: 351 effective length of database: 168,033 effective search space: 58979583 effective search space used: 58979583 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)