Query lcl|NC_016770.1_cdsid_YP_005102501.1 [gene=B124-14_036] [protein=hypothetical protein] [protein_id=YP_005102501.1] [location=complement(25158..25610)] Match_columns 150 No_of_seqs 4 out of 7 Neff 1.9 Searched_HMMs 1612 Date Thu Nov 7 13:24:34 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_36 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_36_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:79091 Length: 175 93.1 0.0011 7.1E-07 36.7 6.5 131 1-150 4-175 (175) 2 protein:vir:99833 Length: 190 92.8 0.0011 6.9E-07 36.8 6.0 130 1-150 9-189 (190) 3 protein:vir:103841 Length: 155 91.8 0.0015 9.1E-07 36.1 5.5 122 1-150 10-155 (155) 4 protein:vir:99196 Length: 155 91.1 0.003 1.9E-06 34.4 6.4 123 1-150 4-154 (155) 5 protein:vir:79225 Length: 155 90.8 0.0026 1.6E-06 34.8 5.7 120 1-150 4-155 (155) 6 protein:vir:107851 Length: 175 89.7 0.0065 4.1E-06 32.6 7.0 131 1-150 4-175 (175) 7 protein:vir:1988 Length: 156 # 89.2 0.0057 3.5E-06 32.9 6.3 128 1-149 10-156 (156) 8 protein:vir:97088 Length: 157 33.4 0.71 0.00044 21.4 4.1 106 1-150 9-156 (157) 9 protein:vir:3163 Length: 145 # 22.7 0.85 0.00053 21.0 2.5 128 1-149 1-145 (145) 10 protein:vir:3617 Length: 112 # 16.3 2.3 0.0015 18.6 3.4 98 1-148 6-112 (112) No 1 >protein:vir:79091 Length: 175 # NCBI annotation: gp5, phage virion morphogenesis protein # Family: family:all:274 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111205;genbank:gi:134288802;genbank:GeneID:4960765 Probab=93.08 E-value=0.0011 Score=36.71 Aligned_cols=131 Identities=21% Similarity=0.325 Sum_probs=82.9 Q ss_pred Ch------hhHHHHHHHHhhhc-chh----hHHHHHHhcCCCeEEeecccchhhhhhhhhcCcccccccCCcchhhhhhh Q lcl|NC_016770. 1 MI------SGLIDKFKKVGEEL-DTG----EIAKKIVRDNDNILIDMNAQDQLYAKGVNRLGVRIDEYQPYRPLTIQVKI 69 (150) Q Consensus 1 m~------~gl~~k~k~~~~~~-d~~----~~a~~~~~~ndni~~dmn~~~qly~~gvnrl~v~i~~yqPyrP~te~~k~ 69 (150) || +.+...|+++.+.+ |.- +|+......- +-+|..| . =| +++|+.|.|+.-+. T Consensus 4 ~i~i~~d~~~~~~~L~~l~~~~~d~~~lm~~Ig~~l~~~t-----~~rF~~~-----~----~P--dW~pls~~t~~~r~ 67 (175) T protein:vir:79 4 FVNFQIDDSALRTRLLQLEQAGHQKADAMRKITQALVLVT-----EDNFAAQ-----G----RP--RWQALSEATIHMRV 67 (175) T ss_pred EEEEEechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----HHHHHhc-----C----CC--CCCCCChHHHHhhc Confidence 22 34556666665533 433 3444333321 1233332 1 12 69999999987665 Q ss_pred hcCCCc---------------ccceeeeccccccceeEEEecceEEEeeccchhhHHHHHhhHH-------------HhC Q lcl|NC_016770. 70 EKRQPY---------------DRVTLKDTGEFYDSFYVETAEDRFYIKASDEKTNWLIKKYGAE-------------IFG 121 (150) Q Consensus 70 ~kgqPY---------------drVtL~DTG~F~D~~YvE~~~dtfei~SsD~KTe~LieKYG~E-------------IfG 121 (150) -.|-.+ ..-+|.+||.+.++.--...++.+.|-|.-.-+. +--||.. .|| T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~tG~L~~Si~~~~~~~~v~vGtn~~YAa--iHqfGg~~~~~~~v~IPARPfLG 145 (175) T protein:vir:79 68 GGKKAYKKNGELTAAASRRKAGLMILQDSGQMAASTATDSGEDYSVIGSNKEYAA--IQHFGGQAGRGLKVTIPGRAWLP 145 (175) T ss_pred cccccccccccchhhHhhhccCCCcceechhhhhhhhheecCCEEEEecCcchhh--HhhcccccCCCcccccCcccccC Confidence 433322 3456999999999999888888899977655443 5667764 489 Q ss_pred CCchh-hH-hHHHhhccHHHHHHHHHHhccC Q lcl|NC_016770. 122 LTNDS-LA-EFINDYVKDEAYNRVKEILNER 150 (150) Q Consensus 122 LTpen-la-E~~e~yIKPaf~~kvr~~L~~~ 150 (150) ++.+. ++ |+.+ -|.....+.+...|..| T Consensus 146 ~s~~de~~~~~~~-~I~~~i~~~l~~a~~~~ 175 (175) T protein:vir:79 146 VTADGELQPEAVE-PVLNTILRHLMDAANRR 175 (175) T ss_pred CCcccchhHHHHH-HHHHHHHHHHHHHhccC Confidence 98765 33 3334 37777788888888888 No 2 >protein:vir:99833 Length: 190 # NCBI annotation: hypothetical protein # Family: family:all:274 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164071;genbank:gi:56692603;genbank:GeneID:3192561 Probab=92.79 E-value=0.0011 Score=36.77 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=74.1 Q ss_pred ChhhHHHHHHHHhhhc-chhhHHHHHHhcCCCeEEeecccchhhhhhhhhcCcccccccCCcchhhhhhhhcCCCcccce Q lcl|NC_016770. 1 MISGLIDKFKKVGEEL-DTGEIAKKIVRDNDNILIDMNAQDQLYAKGVNRLGVRIDEYQPYRPLTIQVKIEKRQPYDRVT 79 (150) Q Consensus 1 m~~gl~~k~k~~~~~~-d~~~~a~~~~~~ndni~~dmn~~~qly~~gvnrl~v~i~~yqPyrP~te~~k~~kgqPYdrVt 79 (150) =++.|.+.|.++-..+ |.-+|+.+|-..= .+...+=+..+.+=-| .-|+|-.|.|...|.-.| .-+ T Consensus 9 d~~~~~~~L~~l~~~~~~~~~l~~~ig~~l------~~~~~~rf~~~~~PdG---~~W~p~~~~t~~rk~~~~----~~~ 75 (190) T protein:vir:99 9 DGRRALDVLNAGSAALGDPSGLLQDIGELL------LNIHRRRFQAQVSPDG---TPWQPLSPAYLRRKRKNR----DKI 75 (190) T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------HHHHHHHHHhcCCCCC---CCCccccHHHHHHhhcCC----Ccc Confidence 1234445555554433 3333333322110 0111222222323223 235555566654444333 246 Q ss_pred eeeccccccceeEEEecceEEEeeccchhhHHHHHhhH------------------------------------------ Q lcl|NC_016770. 80 LKDTGEFYDSFYVETAEDRFYIKASDEKTNWLIKKYGA------------------------------------------ 117 (150) Q Consensus 80 L~DTG~F~D~~YvE~~~dtfei~SsD~KTe~LieKYG~------------------------------------------ 117 (150) |.+||.+.+++-.++.+|.+++-|.-..+.. --||. T Consensus 76 L~~tg~L~~Si~~~~~~~~v~vGtn~~yA~i--Hq~Gg~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 153 (190) T protein:vir:99 76 LTLDGHLRNLLRYQLDGSELLFGSDRPYAAI--HHFGGTIQRQARSSTVYFRQNERTGEVGREFVPRRRSNFAQDVQIGP 153 (190) T ss_pred ceecHHHHHHHhheecCcEEEEecCcchhhh--hhcCCcccccccchhhhhhhhhhhhhhhcccccccccccchhccccc Confidence 9999999999999999999999776655432 33442 Q ss_pred --------HHhCCCchhhHhHHHhhccHHHHHHHHHHhccC Q lcl|NC_016770. 118 --------EIFGLTNDSLAEFINDYVKDEAYNRVKEILNER 150 (150) Q Consensus 118 --------EIfGLTpenlaE~~e~yIKPaf~~kvr~~L~~~ 150 (150) ..||++++..+++.+. ..+-+.++|+++ T Consensus 154 ~~v~IPaRpfLG~s~~d~~~I~~~-----i~~~l~~~~~~~ 189 (190) T protein:vir:99 154 YTIQMPARPWLGTSSQDDDTILQR-----VERYLQRALRER 189 (190) T ss_pred ceeeecCcccCCCCHHHHHHHHHH-----HHHHHHHHHhhc Confidence 2478998887776655 677888888888 No 3 >protein:vir:103841 Length: 155 # NCBI annotation: virion morphogenesis protein # Family: family:all:274 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938236;genbank:gi:38229141;genbank:GeneID:2648156 Probab=91.83 E-value=0.0015 Score=36.12 Aligned_cols=122 Identities=12% Similarity=0.146 Sum_probs=71.1 Q ss_pred ChhhHHHHHHHHhhhc--------chhhHHHHHHhcCCCeEEeecccchhhhhhhhhcCcccccccCCcchhhhhhhhcC Q lcl|NC_016770. 1 MISGLIDKFKKVGEEL--------DTGEIAKKIVRDNDNILIDMNAQDQLYAKGVNRLGVRIDEYQPYRPLTIQVKIEKR 72 (150) Q Consensus 1 m~~gl~~k~k~~~~~~--------d~~~~a~~~~~~ndni~~dmn~~~qly~~gvnrl~v~i~~yqPyrP~te~~k~~kg 72 (150) =.+.+...|.+|...+ +.++..+...++| |.. + |- -|+|-.|.|..-+..+| T Consensus 10 ~~~~~~~~L~~l~~~~~~~~~l~~~ig~~l~~~~~~r--------F~p----~-----G~---~W~plsp~t~~~r~k~g 69 (155) T protein:vir:10 10 VDREVQERLAALYAAVTDTLPLMRGIAAELLAETEFA--------FMD----E-----GP---GWPQLSPVTVAARAAKG 69 (155) T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------Hhh----c-----CC---CCCCCCccchHHHHhcc Confidence 1223444444443322 2334444444443 211 1 22 37788888877777777 Q ss_pred CCcccceeeeccccccceeEEEecceEEEeeccchhhHHHHHhhHHH-------------hCCCchh-h-HhHHHhhccH Q lcl|NC_016770. 73 QPYDRVTLKDTGEFYDSFYVETAEDRFYIKASDEKTNWLIKKYGAEI-------------FGLTNDS-L-AEFINDYVKD 137 (150) Q Consensus 73 qPYdrVtL~DTG~F~D~~YvE~~~dtfei~SsD~KTe~LieKYG~EI-------------fGLTpen-l-aE~~e~yIKP 137 (150) ....+ +|.+||.+.++.-....++.+.|-|...-+. +--||..| ||++.+. + .|+.+ T Consensus 70 ~~~~~-~L~~tG~L~~Si~~~~~~~~v~vGtn~~YA~--iHqfGg~~~~~~~~~iPARPfLG~s~~~e~~~ei~~----- 141 (155) T protein:vir:10 70 RGAHP-ILQVTNALARSITTRADRDQAQIGSNLSYAA--IQQLGGQAGRGRKVTIPARPYLPVLRNGQLKPSARD----- 141 (155) T ss_pred CCCCC-ccccchhhhhhhhceecCCEEEEecCcchhh--hhhcccccCCCCccccCCccccCCCccccchHHHHH----- Confidence 66543 4999999999999888899999987766544 67789876 8887433 2 22222 Q ss_pred HHHHHHHHHhc-cC Q lcl|NC_016770. 138 EAYNRVKEILN-ER 150 (150) Q Consensus 138 af~~kvr~~L~-~~ 150 (150) ...+.+.+.|. +| T Consensus 142 ~I~~~i~~~l~~~r 155 (155) T protein:vir:10 142 AVLDVLLAALSQGR 155 (155) T ss_pred HHHHHHHHHHhhcC Confidence 23334444442 23 No 4 >protein:vir:99196 Length: 155 # NCBI annotation: putative virion morphogenesis protein # Family: family:all:274 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950453;genbank:gi:119953654;genbank:GeneID:4643056 Probab=91.08 E-value=0.003 Score=34.40 Aligned_cols=123 Identities=12% Similarity=0.107 Sum_probs=73.0 Q ss_pred Ch------hhHHHHHHHHhhhc--------chhhHHHHHHhcCCCeEEeecccchhhhhhhhhcCcccccccCCcchhhh Q lcl|NC_016770. 1 MI------SGLIDKFKKVGEEL--------DTGEIAKKIVRDNDNILIDMNAQDQLYAKGVNRLGVRIDEYQPYRPLTIQ 66 (150) Q Consensus 1 m~------~gl~~k~k~~~~~~--------d~~~~a~~~~~~ndni~~dmn~~~qly~~gvnrl~v~i~~yqPyrP~te~ 66 (150) || +.+...|++|...+ +.++..+...++| |. -. |. -|+|..|.|.. T Consensus 4 ~i~i~~d~~~~~~~L~~l~~~~~d~~~l~~~ig~~l~~~~~~r--------F~----pd-----G~---~W~pls~~t~~ 63 (155) T protein:vir:99 4 RIDVELDDQEVRQRLALLMRSVTDTLPVMRGIAAELLAETEFA--------FM----DE-----GP---GWPQLSPVTVA 63 (155) T ss_pred EEEEEechHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------hh----cc-----CC---CCCCCChHHHH Confidence 22 34555666655433 2233333444443 32 12 32 47888888888 Q ss_pred hhhhcCCCcccceeeeccccccceeEEEecceEEEeeccchhhHHHHHhhHHH-------------hCCCchh-hHhHHH Q lcl|NC_016770. 67 VKIEKRQPYDRVTLKDTGEFYDSFYVETAEDRFYIKASDEKTNWLIKKYGAEI-------------FGLTNDS-LAEFIN 132 (150) Q Consensus 67 ~k~~kgqPYdrVtL~DTG~F~D~~YvE~~~dtfei~SsD~KTe~LieKYG~EI-------------fGLTpen-laE~~e 132 (150) .|..+|.+... +|.+||.+.++.-.+..++.+.|-|...-+. +--||..+ ||++.+. ++.-. T Consensus 64 ~r~~~g~~~~~-iL~~tg~L~~Si~~~~~~~~v~vGtn~~YA~--iHqfGg~~~~~~~v~iPaRpfLG~s~~~~l~~e~- 139 (155) T protein:vir:99 64 AREAKGRGPHP-ILQVTNALARSVTTWADRNEAGIGSNLVYAA--IHQFGGDAGRGHQVEIPARRYLPFDENGQLAAGA- 139 (155) T ss_pred HHhccCCCCCC-cchhchhhhhhhhceecCCEEEEecCccchh--hhhcccccCCCCccccCCccccCCCCccccchHH- Confidence 88887777653 5999999999999999999999977665543 56677653 6776542 21111 Q ss_pred hhccHHHHHHHHHHhccC Q lcl|NC_016770. 133 DYVKDEAYNRVKEILNER 150 (150) Q Consensus 133 ~yIKPaf~~kvr~~L~~~ 150 (150) ..+..+-|.+.|..+ T Consensus 140 ---~~~I~~~i~~~l~~~ 154 (155) T protein:vir:99 140 ---RQSILEIVLTALSRN 154 (155) T ss_pred ---HHHHHHHHHHHHhcc Confidence 112334455555555 No 5 >protein:vir:79225 Length: 155 # NCBI annotation: virion morphogenesis protein # Family: family:all:274 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469157;genbank:gi:157835000;genbank:GeneID:5648806 Probab=90.76 E-value=0.0026 Score=34.77 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=70.4 Q ss_pred Ch------hhHHHHHHHHhhhc-c-------hhhHHHHHHhcCCCeEEeecccchhhhhhhhhcCcccccccCCcchhhh Q lcl|NC_016770. 1 MI------SGLIDKFKKVGEEL-D-------TGEIAKKIVRDNDNILIDMNAQDQLYAKGVNRLGVRIDEYQPYRPLTIQ 66 (150) Q Consensus 1 m~------~gl~~k~k~~~~~~-d-------~~~~a~~~~~~ndni~~dmn~~~qly~~gvnrl~v~i~~yqPyrP~te~ 66 (150) || +.+...|++|...+ | .++......++| |.. + |. -|+|..|.|.. T Consensus 4 ~i~i~~d~~~~~~~L~~l~~~~~d~~~l~~~ig~~l~~~~~~r--------F~~----e-----G~---~W~pls~~t~~ 63 (155) T protein:vir:79 4 RIDVELDDQEVRQRLAVLMRSVTDTLPVMRGIAAELLAETEFA--------FMD----E-----GP---GWPQLSPATVA 63 (155) T ss_pred EEEEEechHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------hhc----c-----CC---CCCCCCHHHHH Confidence 22 34445555554422 2 233333333332 321 1 32 48888888888 Q ss_pred hhhhcCCCcccceeeeccccccceeEEEecceEEEeeccchhhHHHHHhhHHH-------------hCCCchhhHhHHHh Q lcl|NC_016770. 67 VKIEKRQPYDRVTLKDTGEFYDSFYVETAEDRFYIKASDEKTNWLIKKYGAEI-------------FGLTNDSLAEFIND 133 (150) Q Consensus 67 ~k~~kgqPYdrVtL~DTG~F~D~~YvE~~~dtfei~SsD~KTe~LieKYG~EI-------------fGLTpenlaE~~e~ 133 (150) -|..+|.+..+ +|.+||.+.+|.-.+..++.+.|-|....+. +--||..| ||++.++- T Consensus 64 ~r~~~g~~~~~-iL~~tG~L~~Si~~~~~~~~v~vGt~~~YA~--iHqfGg~~~~~~~v~iPaRpfLG~s~~~~------ 134 (155) T protein:vir:79 64 AREAKGRGPHP-ILQVTNALARSVTTWADRNEAGIGSNLVYAA--IHQFGGDAGRGHQVEIPARRYLPFDENGQ------ 134 (155) T ss_pred HHhccCCCCCC-ccccchhhhhhhhceecCCEEEEecCchhhh--hhhcccccCCCCccccCCccccCCCCccc------ Confidence 88888877764 6999999999999999999999977665543 45677653 67765431 Q ss_pred hccHHHHHH----HHHHh-ccC Q lcl|NC_016770. 134 YVKDEAYNR----VKEIL-NER 150 (150) Q Consensus 134 yIKPaf~~k----vr~~L-~~~ 150 (150) ++|+.-+. |.+-| .+| T Consensus 135 -l~~~~~~~I~~~i~~~l~r~r 155 (155) T protein:vir:79 135 -LAAGARQSILEVVLTALSRNR 155 (155) T ss_pred -cchHHHHHHHHHHHHHHHhcC Confidence 22222223 33333 233 No 6 >protein:vir:107851 Length: 175 # NCBI annotation: gp31 # Family: family:all:274 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024704;genbank:gi:48696941;genbank:GeneID:2845939 Probab=89.71 E-value=0.0065 Score=32.56 Aligned_cols=131 Identities=18% Similarity=0.293 Sum_probs=83.8 Q ss_pred Ch------hhHHHHHHHHhhhc-chh----hHHHHHHhcCCCeEEeecccchhhhhhhhhcCcccccccCCcchhhhhhh Q lcl|NC_016770. 1 MI------SGLIDKFKKVGEEL-DTG----EIAKKIVRDNDNILIDMNAQDQLYAKGVNRLGVRIDEYQPYRPLTIQVKI 69 (150) Q Consensus 1 m~------~gl~~k~k~~~~~~-d~~----~~a~~~~~~ndni~~dmn~~~qly~~gvnrl~v~i~~yqPyrP~te~~k~ 69 (150) || +.|...|.+|...+ |.- +|+....... +.+|..| .+ | +++|+.|.|...+. T Consensus 4 ~i~i~~~~~~l~~~L~~l~~~~~d~~~l~~~Ig~~l~~~t-----~~rF~~e-----~~----P--dw~p~~p~t~~~r~ 67 (175) T protein:vir:10 4 FVNFQIDDSALRTRLLQLEQAGHQKAGAMRKIAQALVLVT-----EDNFAAQ-----GR----P--RWQALSEATIHMRV 67 (175) T ss_pred eEEEEecHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-----HHHHHhc-----cC----C--CCCCCchhhhhhhh Confidence 22 35667777776533 433 3444433322 2244333 22 3 69999999987665 Q ss_pred hcCCC---------------cccceeeeccccccceeEEEecceEEEeeccchhhHHHHHhhHH-------------HhC Q lcl|NC_016770. 70 EKRQP---------------YDRVTLKDTGEFYDSFYVETAEDRFYIKASDEKTNWLIKKYGAE-------------IFG 121 (150) Q Consensus 70 ~kgqP---------------YdrVtL~DTG~F~D~~YvE~~~dtfei~SsD~KTe~LieKYG~E-------------IfG 121 (150) -+|-. ...-+|.+||.+.++.--...++.++|-|.-.-+. +--||.. .|| T Consensus 68 ~~g~~~~k~~~~~~~~~~~~~~~~~L~~tG~L~~Si~~~~~~~~v~vGtn~~YAa--iHqfGg~~~~~~~v~iPaRpfLG 145 (175) T protein:vir:10 68 GGKKAYKKNGELTAAASRRKAGLMILQDSGQMAASVSTDHDDNSAVIGSNKEYAA--IHQFGGQAGRGLKVTIPARPWLP 145 (175) T ss_pred cccccchhhhhhhhhhhhhccCCCcceechhhhhhhheeecCCEEEEecChhhhh--hhhcccccCCCCccccCCccccC Confidence 44432 23457999999999999998888899977655443 5567764 489 Q ss_pred CCchhhH--hHHHhhccHHHHHHHHHHhccC Q lcl|NC_016770. 122 LTNDSLA--EFINDYVKDEAYNRVKEILNER 150 (150) Q Consensus 122 LTpenla--E~~e~yIKPaf~~kvr~~L~~~ 150 (150) ++.++-. |.++. |-....+.+.+.|+.| T Consensus 146 ~s~~d~~~~e~~~~-Il~~~~~~l~~~~~~~ 175 (175) T protein:vir:10 146 VTADGELQPEAVEP-VLNTILRHLMDAANRR 175 (175) T ss_pred CCcccccchHHHHH-HHHHHHHHHHHHhccC Confidence 9876532 33343 6666788888888888 No 7 >protein:vir:1988 Length: 156 # NCBI annotation: putative virion morphogenesis protein # Family: family:all:274 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050635;genbank:gi:9633522;genbank:GeneID:2636282 Probab=89.16 E-value=0.0057 Score=32.90 Aligned_cols=128 Identities=13% Similarity=0.216 Sum_probs=79.2 Q ss_pred ChhhHHHHHHHHhhhcchhhHHHHH----HhcCCCeEEeecccchhhhhhhhhc-CcccccccCCcchhhhhhhhcCCCc Q lcl|NC_016770. 1 MISGLIDKFKKVGEELDTGEIAKKI----VRDNDNILIDMNAQDQLYAKGVNRL-GVRIDEYQPYRPLTIQVKIEKRQPY 75 (150) Q Consensus 1 m~~gl~~k~k~~~~~~d~~~~a~~~----~~~ndni~~dmn~~~qly~~gvnrl-~v~i~~yqPyrP~te~~k~~kgqPY 75 (150) =.+.|.+.|.+|....+.-.+..+| ... .++=+..+.+-- |. -|.|..|.|..-|.-+|... T Consensus 10 d~~~l~~~L~~l~~~~~~~~l~~~Ig~~l~~~----------~~~rf~~~~~Pd~G~---~W~pls~~t~~~r~~~~~~~ 76 (156) T protein:vir:19 10 DVRRIQLALDELGTVTRDRAIPRVMAAALLSS----------TEQAFERQADPDTGK---GWEAWSDSWLAWRQDHGFVP 76 (156) T ss_pred cHHHHHHHHHHHHhhhccHHHHHHHHHHHHHH----------HHHHHHhcCCCCCCC---CCcccChHHHHHhhccCCCC Confidence 2345556666665544433343333 222 122233333221 32 47888888887776666554 Q ss_pred ccceeeeccccccceeEEEecceEEEeeccchhhHHHHHhhHH--------------HhCCCchhhHhHHHhhccHHHHH Q lcl|NC_016770. 76 DRVTLKDTGEFYDSFYVETAEDRFYIKASDEKTNWLIKKYGAE--------------IFGLTNDSLAEFINDYVKDEAYN 141 (150) Q Consensus 76 drVtL~DTG~F~D~~YvE~~~dtfei~SsD~KTe~LieKYG~E--------------IfGLTpenlaE~~e~yIKPaf~~ 141 (150) . =+|.|||.+.+++-....+|.+++-|.-..+ -+--||.. .||++++..+++.+. ..+ T Consensus 77 ~-~~L~~tg~L~~Si~~~~~~~~v~vGt~~~yA--~vHqfG~~~~~~~~~~~iPaRpfLG~s~~d~~~I~~~-----i~~ 148 (156) T protein:vir:19 77 G-SILTLHGDLARSITTDYGQDYALIGSPKIYA--AIHQWGGTPDMAPRPAGVPARPYMGLDKTGEQEIFDA-----IRK 148 (156) T ss_pred C-cchhhhHHHHHHhhheecCCEEEEecchhhh--HHhhcCcccccCCCccccCCccccCCCHHHHHHHHHH-----HHH Confidence 3 3699999999999988889999996654333 34667754 389999998777666 445 Q ss_pred HHHHHhcc Q lcl|NC_016770. 142 RVKEILNE 149 (150) Q Consensus 142 kvr~~L~~ 149 (150) -++.+|+. T Consensus 149 ~l~~~~~~ 156 (156) T protein:vir:19 149 RVSAALRQ 156 (156) T ss_pred HHHHHhhC Confidence 55555555 No 8 >protein:vir:97088 Length: 157 # NCBI annotation: hypothetical protein # Family: family:all:2714 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453568;genbank:gi:84662603;genbank:GeneID:5142503 Probab=33.38 E-value=0.71 Score=21.39 Aligned_cols=106 Identities=16% Similarity=0.238 Sum_probs=47.7 Q ss_pred ChhhHHHHHHHHhhhcchhhHHHHHHhcCCCeEEeecccchhhhhhhhhcCcccccccCCcchhhhhhhhcCCCccccee Q lcl|NC_016770. 1 MISGLIDKFKKVGEELDTGEIAKKIVRDNDNILIDMNAQDQLYAKGVNRLGVRIDEYQPYRPLTIQVKIEKRQPYDRVTL 80 (150) Q Consensus 1 m~~gl~~k~k~~~~~~d~~~~a~~~~~~ndni~~dmn~~~qly~~gvnrl~v~i~~yqPyrP~te~~k~~kgqPYdrVtL 80 (150) =|+||.+.|..+++. .++++.++++..-++|.| +=-+ .||- T Consensus 9 d~s~l~~~l~~l~~~--~~~v~R~A~~~ga~vv~d---------ear~--~aP~-------------------------- 49 (157) T protein:vir:97 9 DITGILAGLETVVEH--SSDVVRTMTYESAVAVRE---------SAKA--FVND-------------------------- 49 (157) T ss_pred cHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHH---------HHHH--hCCC-------------------------- Confidence 288999999999863 668889998887666543 2112 2221 Q ss_pred eeccccccceeEEEec-----------------------------ceEEEeeccchhhHHHHHhhHHHhCCCch------ Q lcl|NC_016770. 81 KDTGEFYDSFYVETAE-----------------------------DRFYIKASDEKTNWLIKKYGAEIFGLTND------ 125 (150) Q Consensus 81 ~DTG~F~D~~YvE~~~-----------------------------dtfei~SsD~KTe~LieKYG~EIfGLTpe------ 125 (150) +||.+-++.|+.... -...+..++.+..|...+ . =+| |+- T Consensus 50 -~tG~LkksI~~~~~~~~s~~g~~~~~Vg~~~~~a~~g~~vEfG~~~~~~~~~~~~~~~~~~~-~--~~~-t~~~~Pa~P 124 (157) T protein:vir:97 50 -ETGKLRNNLYVAYSPEESVEGIQTYAVSWRKKAAPHGHLLEFGHWQTHAAYRDKDGQWYSSK-V--KLV-NPKWIPAKP 124 (157) T ss_pred -CcchhhhheeeeeccccCCCceEEEEEeecCCccceeeeeecCcccccccccCCcccccccc-c--ccC-CCCcCCCCc Confidence 244444444443221 112222333333221111 1 022 111 Q ss_pred -------hhHhHHHhhccHHHHHHHHHHhccC Q lcl|NC_016770. 126 -------SLAEFINDYVKDEAYNRVKEILNER 150 (150) Q Consensus 126 -------nlaE~~e~yIKPaf~~kvr~~L~~~ 150 (150) ...+....-++.++..+|.+.|+-- T Consensus 125 FlRPA~d~~k~~a~~~~~~~l~k~I~e~l~g~ 156 (157) T protein:vir:97 125 FLRPGYDSVAMQIPDIARAAGAKKYAELQRGD 156 (157) T ss_pred ccchHHHHhHHHHHHHHHHHHHHHHHHHhcCC Confidence 1111111224444444455555444 No 9 >protein:vir:3163 Length: 145 # NCBI annotation: unknown # Family: family:all:28417 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665934;genbank:gi:22091120;genbank:GeneID:951270 Probab=22.69 E-value=0.85 Score=20.97 Aligned_cols=128 Identities=18% Similarity=0.270 Sum_probs=58.7 Q ss_pred ChhhHH---HHHHHHhhhc-ch-hhHHHHHHhcCCCeEEeecccchhhhhhhhhcCcccccccCCcchhhhhhhhcCCCc Q lcl|NC_016770. 1 MISGLI---DKFKKVGEEL-DT-GEIAKKIVRDNDNILIDMNAQDQLYAKGVNRLGVRIDEYQPYRPLTIQVKIEKRQPY 75 (150) Q Consensus 1 m~~gl~---~k~k~~~~~~-d~-~~~a~~~~~~ndni~~dmn~~~qly~~gvnrl~v~i~~yqPyrP~te~~k~~kgqPY 75 (150) ||.-.. +.+.++...+ +. .+++..++.+ +.-+|. ++..--| +|++|+...++..|+-. T Consensus 1 ~i~~~~~i~~~l~~l~~~~~~~l~~i~~~~~~~-----~~~rf~-----~~~~p~G------~~W~pLs~st~a~k~~~- 63 (145) T protein:vir:31 1 MVEDENNIPEAREAIQDGLTDGLERLHTITLRE-----LITNMS-----DGQDALG------NPWEPLKESTIRAKGSD- 63 (145) T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-----hcCCCCC------CCCcccChHHHHHhcCC- Confidence 665543 3333333211 11 2233322221 011222 2222222 34555444433333322 Q ss_pred ccceeeeccccccceeEE----EecceEEEeeccchhhHHHHHhhHHH--------hCCCchhhHhHHHhhccHHHHHHH Q lcl|NC_016770. 76 DRVTLKDTGEFYDSFYVE----TAEDRFYIKASDEKTNWLIKKYGAEI--------FGLTNDSLAEFINDYVKDEAYNRV 143 (150) Q Consensus 76 drVtL~DTG~F~D~~YvE----~~~dtfei~SsD~KTe~LieKYG~EI--------fGLTpenlaE~~e~yIKPaf~~kv 143 (150) -+|.|||.+.+++--. ..++.+.|-|+...+. +--||..- ||+..++-.+.++.-|.....+-+ T Consensus 64 --~~L~~tG~L~~Si~~~~~~~~~~~~a~vGtn~~YA~--~hqfG~~~~~IPaRPfLG~~~~~~~~~~~~ii~~~i~~~L 139 (145) T protein:vir:31 64 --TPLIDNSRLLTDINAASMMDRANRMAVIGTNLDYAE--HHEFGAPEAGIPARPIFGPAGAYASQQAPDVIGDEIDTNL 139 (145) T ss_pred --CCCccCHHHHHHHHHHhhhcccCceeEecCCchhhh--hhccCCcccccCCCCccCCCccchHHHHHHHHHHHHHHHh Confidence 3599999988876533 2455688888887776 45677643 787765433333332333333333 Q ss_pred HHHhcc Q lcl|NC_016770. 144 KEILNE 149 (150) Q Consensus 144 r~~L~~ 149 (150) .-.+-. T Consensus 140 ~~~~~~ 145 (145) T protein:vir:31 140 EGAVID 145 (145) T ss_pred hhhccC Confidence 222222 No 10 >protein:vir:3617 Length: 112 # NCBI annotation: ORF40 # Family: family:all:180 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112703;genbank:gi:13786571;genbank:GeneID:921069 Probab=16.30 E-value=2.3 Score=18.56 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=48.8 Q ss_pred ChhhHHHHHHHHhhhcchhhHHHHHHhcCCCeEEeecccchhhhhhhhhcCcccccccCCcchhhhhhhhcCCCccccee Q lcl|NC_016770. 1 MISGLIDKFKKVGEELDTGEIAKKIVRDNDNILIDMNAQDQLYAKGVNRLGVRIDEYQPYRPLTIQVKIEKRQPYDRVTL 80 (150) Q Consensus 1 m~~gl~~k~k~~~~~~d~~~~a~~~~~~ndni~~dmn~~~qly~~gvnrl~v~i~~yqPyrP~te~~k~~kgqPYdrVtL 80 (150) =++||-+-.++|... .....+.++|+++-..+ .++.|. .-|. T Consensus 6 ~i~Gld~l~~~L~~~-~~~~~~~~al~~~~~~i------------------------------~~~ak~--~aPv----- 47 (112) T protein:vir:36 6 SFKGIDQLVKHLDKA-ASLKGVQQVVKSNTSNM------------------------------TANMQK--LVPV----- 47 (112) T ss_pred eehhHHHHHHHHHhh-hhHHHHHHHHHHHHHHH------------------------------HHHHHH--hCCC----- Confidence 356776655666542 22344566665543221 112221 2243 Q ss_pred eeccccccceeEEEecce--EEEeeccchhhHHHHHhhHHHhCCCchhhHhHHHhhccHH-------HHHHHHHHhc Q lcl|NC_016770. 81 KDTGEFYDSFYVETAEDR--FYIKASDEKTNWLIKKYGAEIFGLTNDSLAEFINDYVKDE-------AYNRVKEILN 148 (150) Q Consensus 81 ~DTG~F~D~~YvE~~~dt--fei~SsD~KTe~LieKYG~EIfGLTpenlaE~~e~yIKPa-------f~~kvr~~L~ 148 (150) |||.+.++..++..++. .++.++..-+.++ -|| |- .+ -.+-+++|+ +.++|++.|. T Consensus 48 -dTG~Lr~si~~~~~~~~~~~~V~~~~~Ya~~v--E~G------T~-k~--~a~Pfl~pa~~~~~~~~~~~i~~~lr 112 (112) T protein:vir:36 48 -DTGYMKRSIKMELTEGGFSGQAGPHTDYSAYV--EYG------TR-FQ--SAQPFVKPAYNEQKGVFIKDLERLLK 112 (112) T ss_pred -CchhhhhceeeeecCCceEEEeecCCCcccee--ecc------cc-cc--CCCcchhhhHHHHHHHHHHHHHHHcC Confidence 69999999998877664 5666554332222 133 11 00 013345554 4555555555 Done!