Query lcl|NC_016763.1_cdsid_YP_005098143.1 [gene=SaPhSE2_gp47] [protein=hypothetical protein] [protein_id=YP_005098143.1] [location=28441..28860] Match_columns 139 No_of_seqs 1 out of 4 Neff 1.0 Searched_HMMs 1612 Date Thu Nov 7 13:14:35 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_47 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_47_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:78379 Length: 139 100.0 5.3E-99 3E-102 559.4 10.4 139 1-139 1-139 (139) 2 protein:vir:94997 Length: 139 100.0 1.7E-98 1E-101 556.6 10.4 139 1-139 1-139 (139) 3 protein:vir:103278 Length: 169 96.6 8.7E-06 5.4E-09 48.3 5.3 131 1-139 30-169 (169) 4 protein:vir:79637 Length: 130 94.9 0.00012 7.5E-08 42.1 4.8 127 3-139 1-129 (130) 5 protein:vir:107704 Length: 132 94.4 0.00024 1.5E-07 40.4 5.1 126 3-139 1-128 (132) 6 protein:vir:104348 Length: 129 92.9 0.00041 2.6E-07 39.1 3.7 126 1-139 2-129 (129) 7 protein:vir:80429 Length: 150 50.6 0.33 0.0002 23.2 5.1 130 1-139 12-150 (150) 8 protein:vir:94921 Length: 125 50.2 0.33 0.0002 23.2 5.1 122 2-135 1-125 (125) 9 protein:vir:100242 Length: 114 15.7 2.7 0.0017 18.2 3.6 103 1-131 1-114 (114) 10 protein:vir:95155 Length: 151 5.2 13 0.0081 14.4 4.9 130 1-139 1-151 (151) No 1 >protein:vir:78379 Length: 139 # NCBI annotation: hypothetical protein # Family: family:all:12033 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110845;genbank:gi:134288606;genbank:GeneID:5179642 Probab=100.00 E-value=5.3e-99 Score=559.35 Aligned_cols=139 Identities=96% Similarity=1.383 Sum_probs=138.9 Q ss_pred CchhHHHHHHhhhhheeeeccCCcceeeeecccCCcccCcchhhheeeeccCcccceeeecccCceEEEecccccccccc Q lcl|NC_016763. 1 MATYFEDLTKAFDTALVTFGMDNDTKVALENIDAPTSTDTPYLASYMLLSDTEQADLFWTEQRAGVYQVDINAGSALGSA 80 (139) Q Consensus 1 matyfedltkafdtalvtfgmdndtkvalenidaptstdtpylasymllsdteqadlfwteqragvyqvdinagsalgsa 80 (139) |||||||||||||||||.||-.|..||||||||+|||||||||||||||||||||||||||||+||||||||.||||||| T Consensus 1 matyfedltkafdtalvafgtnngikvalenidaptstdtpylasymllsdteqadlfwteqragvyqvdinvgsalgsa 80 (139) T protein:vir:78 1 MATYFEDLTKAFDTALVAFGTNNGIKVALENIDAPTSTDTPYLASYMLLSDTEQADLFWTEQRAGVYQVDINVGSALGSA 80 (139) T ss_pred CchhHHHHHHhhhheeeeeccCCceeEeeeccCCCccCCcchhhheeeeccCcccceeeecccCceEEEeeecccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Q lcl|NC_016763. 81 PINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) Q Consensus 81 pinrladklnaafaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) ||||||||||+|||+||||||||||+||||||||||||||||+|||||||||+||+||| T Consensus 81 pinrladklnaafaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) T protein:vir:78 81 PINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) T ss_pred hhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Confidence 99999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:94997 Length: 139 # NCBI annotation: hypothetical protein # Family: family:all:12033 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224021;genbank:gi:62327308;genbank:GeneID:5176825 Probab=100.00 E-value=1.7e-98 Score=556.63 Aligned_cols=139 Identities=96% Similarity=1.392 Sum_probs=139.0 Q ss_pred CchhHHHHHHhhhhheeeeccCCcceeeeecccCCcccCcchhhheeeeccCcccceeeecccCceEEEecccccccccc Q lcl|NC_016763. 1 MATYFEDLTKAFDTALVTFGMDNDTKVALENIDAPTSTDTPYLASYMLLSDTEQADLFWTEQRAGVYQVDINAGSALGSA 80 (139) Q Consensus 1 matyfedltkafdtalvtfgmdndtkvalenidaptstdtpylasymllsdteqadlfwteqragvyqvdinagsalgsa 80 (139) ||||||||||||||||||||-|||.||||||||+|||||.|||||||||||||||||||||||+||||||||.||||||| T Consensus 1 matyfedltkafdtalvtfgtdndikvalenidaptstdapylasymllsdteqadlfwteqragvyqvdinvgsalgsa 80 (139) T protein:vir:94 1 MATYFEDLTKAFDTALVTFGTDNDIKVALENIDAPTSTDAPYLASYMLLSDTEQADLFWTEQRAGVYQVDINVGSALGSA 80 (139) T ss_pred CchhHHHHHHhhhheeeeeccCCCceEEeeccCCCcccCcchhhheeecccCcccceeeecccCceEEEeeecccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Q lcl|NC_016763. 81 PINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) Q Consensus 81 pinrladklnaafaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) ||||||||||..||+||||||||||+||||||||||||||||+||||||||||||+||| T Consensus 81 pinrladklnttfaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) T protein:vir:94 81 PINRLADKLNTTFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) T ss_pred hhHHHHHhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Confidence 99999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:103278 Length: 169 # NCBI annotation: phage-related conserved hypothetical protein # Family: family:all:5121 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277458;genbank:gi:71834100;genbank:GeneID:3562389 Probab=96.62 E-value=8.7e-06 Score=48.32 Aligned_cols=131 Identities=24% Similarity=0.289 Sum_probs=87.4 Q ss_pred Cchh-----HHHHHHhhhhheeeeccC--CcceeeeecccCCc-ccCcchhhheeeeccCcccceeeec-ccCceEEEec Q lcl|NC_016763. 1 MATY-----FEDLTKAFDTALVTFGMD--NDTKVALENIDAPT-STDTPYLASYMLLSDTEQADLFWTE-QRAGVYQVDI 71 (139) Q Consensus 1 maty-----fedltkafdtalvtfgmd--ndtkvalenidapt-stdtpylasymllsdteqadlfwte-qragvyqvdi 71 (139) +..| --.++-++..+|.+..++ .-.+||.||.---. ....+||..+++=.||...||==.- +..|||||+| T Consensus 30 ~~~~~~~~~h~ei~~a~rk~l~~~a~a~~~~LpVA~ENVaFtPp~dG~~YLr~~~lPadT~~~~L~gd~R~y~GVfQIsV 109 (169) T protein:vir:10 30 LRRYRRLNVHYEMMVAARKLVSDAAVDIAGSLPVAYENCGFTPPKNGSSWLKFDYTEVDSVTWGLQRTCRYYVGMVQVSI 109 (169) T ss_pred hhhhhhcchHHHHHHHHHHHHHHHHhhcccCCcEeeCCCCcCCCCCCccEEEEEEecCCceeeeccCCCceEEEEEEEEE Confidence 1111 113455555566555555 35679999997633 4446899999999999888775432 3469999999 Q ss_pred ccccccccchhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Q lcl|NC_016763. 72 NAGSALGSAPINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) Q Consensus 72 nagsalgsapinrladklnaafaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) ..-..-|......+||.+-++|+.|--++.--|- |.-|| .-|+--|.||-- -|-|+-|.- T Consensus 110 V~PaGtG~~ka~qiAdeiadlF~~gt~L~~Gyi~-~~~~~-~p~i~~~s~~~i------Pvr~~~R~D 169 (169) T protein:vir:10 110 FFSPGEGTDRPRQLAGRLSEAFADGTMLDSGYIY-EGGSV-FPPVKSQSGWFI------PVRFYVRMD 169 (169) T ss_pred EecCCCCcchhHHHHHHHHHhhhCCceeeceeec-CCCeE-CCeeecCCceEE------eEEEEEEeC Confidence 9888889999999999999999999887765332 32222 223445667731 133444444 No 4 >protein:vir:79637 Length: 130 # NCBI annotation: gp41 # Family: family:all:5121 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285530;genbank:gi:148734513;genbank:GeneID:5219995 Probab=94.94 E-value=0.00012 Score=42.06 Aligned_cols=127 Identities=24% Similarity=0.222 Sum_probs=83.0 Q ss_pred hhHHHHHHhhhhheeeeccCCcceeeeecccCCc-ccCcchhhheeeeccCcccceeee-cccCceEEEecccccccccc Q lcl|NC_016763. 3 TYFEDLTKAFDTALVTFGMDNDTKVALENIDAPT-STDTPYLASYMLLSDTEQADLFWT-EQRAGVYQVDINAGSALGSA 80 (139) Q Consensus 3 tyfedltkafdtalvtfgmdndtkvalenidapt-stdtpylasymllsdteqadlfwt-eqragvyqvdinagsalgsa 80 (139) -.+| +..+-..++.+-.-|+ -+||.||.---. .....||..+++-.||...+|==. .+..|||||+|..-..-|.. T Consensus 1 ~~~e-~~~aaR~~~~~~~~~~-lpVA~ENv~FtPp~~G~~YLr~~~lpa~T~~~~L~~d~r~y~Gv~QI~VV~paG~G~~ 78 (130) T protein:vir:79 1 MHYE-LSVAARMALAQEYESE-YMIAYENVEFTPPKGGGIWLKYDYKEADTIIHDLKRKCISYIGMVQIGIEFPPGSGID 78 (130) T ss_pred Ccch-hhHHHHHHHHhhhhhh-CceeecCCCcCCCCCCceEEEEEecCCCceeeeccCCCceEEEEEEEEEEecCCCCcc Confidence 1122 2223333444444453 699999987633 334689999999999988776432 34569999999988888999 Q ss_pred hhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Q lcl|NC_016763. 81 PINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) Q Consensus 81 pinrladklnaafaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) ....+||.|-+.|+-|--+..--|- |.-|| .-|+--|.||-- -|-|+-|.- T Consensus 79 ~a~~iA~ei~dlF~~g~~L~~Gyi~-~~~~~-~p~i~~~~~~~i------Pvr~~~R~d 129 (130) T protein:vir:79 79 KARKLAKNIADFFEDGKMLSNGYIS-EGAKV-HQVQKSESGWFY------PVRFYVRYD 129 (130) T ss_pred hhhHHHHHHHHhccCCceeeceeec-CCCeE-CCeeecCCceEE------eEEEEEEec Confidence 9999999999999998777665332 22222 223445667731 133444444 No 5 >protein:vir:107704 Length: 132 # NCBI annotation: hypothetical protein # Family: family:all:5121 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003903;genbank:gi:45686319;genbank:GeneID:2773044 Probab=94.36 E-value=0.00024 Score=40.39 Aligned_cols=126 Identities=19% Similarity=0.214 Sum_probs=75.8 Q ss_pred hhHHHHHHhhhhheeeeccCCcceeeeecccCCc-ccCcchhhheeeeccCcccceeee-cccCceEEEecccccccccc Q lcl|NC_016763. 3 TYFEDLTKAFDTALVTFGMDNDTKVALENIDAPT-STDTPYLASYMLLSDTEQADLFWT-EQRAGVYQVDINAGSALGSA 80 (139) Q Consensus 3 tyfedltkafdtalvtfgmdndtkvalenidapt-stdtpylasymllsdteqadlfwt-eqragvyqvdinagsalgsa 80 (139) -.+| +.-|...++.. .-.+.+||.||..--. ....+||..+++-.||...+|==. .+..|||||+|..-..-|.. T Consensus 1 ~hyE-~~~a~r~~la~--~~~~lpVA~eNv~F~Pp~~G~~yLr~~~lpa~T~~~~L~~d~r~y~Gv~QI~Vv~paG~G~~ 77 (132) T protein:vir:10 1 MHYE-LSAAARAAFLS--KYRDFPHYMENRNFTPPKDGGMWLRFNYIEGDTLYLSIDRKCKSYIAIVQIGVVFPPGSGVD 77 (132) T ss_pred CchH-HHHHHHHHHHh--hhcCCcEeecCCCcCCCCCCceEEEEEEccCCceeeeccCcCcEEEEEEEEEEEecCCCCcc Confidence 1122 22233333322 2234799999987633 344699999999999998887322 23469999999988888999 Q ss_pred hhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Q lcl|NC_016763. 81 PINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) Q Consensus 81 pinrladklnaafaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) ....|||.|-+.|.-|--+..-- .-|.-||- -|+--|.||-- | +.|.-|.- T Consensus 78 ~a~~iAd~i~~~F~~g~~l~~Gy-i~~~~~~~-p~i~~~s~~~i-P-----vrf~yR~D 128 (132) T protein:vir:10 78 EARLKAKEIADFFKDGKMLNVGY-IFEGAIVH-QIVKHESGWMI-P-----VRFTVRVD 128 (132) T ss_pred hhHHHHHHHHHhccCcceeecce-ecCCCccC-CceeCCcceEE-E-----EEEEEEec Confidence 99999999999998765553331 11222221 12223444421 1 23333433 No 6 >protein:vir:104348 Length: 129 # NCBI annotation: hypothetical protein # Family: family:all:5121 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398976;genbank:gi:81343960;genbank:GeneID:3778880 Probab=92.85 E-value=0.00041 Score=39.14 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=79.4 Q ss_pred CchhHHHHHHhhhhheeeeccCCcceeeeecccCCc-ccCcchhhheeeeccCcccceeee-cccCceEEEecccccccc Q lcl|NC_016763. 1 MATYFEDLTKAFDTALVTFGMDNDTKVALENIDAPT-STDTPYLASYMLLSDTEQADLFWT-EQRAGVYQVDINAGSALG 78 (139) Q Consensus 1 matyfedltkafdtalvtfgmdndtkvalenidapt-stdtpylasymllsdteqadlfwt-eqragvyqvdinagsalg 78 (139) ++.--+-..+++- -++ -..-+||.||.---. .....||..|++-.||...+|==. .+..|||||+|..-..-| T Consensus 2 s~aar~~v~d~~~---~~~--~~~lpVA~eNv~FtPp~~G~~YLr~~~lpa~T~~~~L~~d~r~y~Gv~QI~Vv~p~G~G 76 (129) T protein:vir:10 2 SLAARKFVNDLLV---NEF--PVRYPVAWENAAFTPPADGSIWLKYDYTEVDTVTYGLSRKCKYYVGMVQISVFFSPGTG 76 (129) T ss_pred chHHHHHHHHHHH---Hhh--cCCCcEeecCCCcCCCCCCceEEEEEecCCCceeeeccCCCceEEEEEEEEEEecCCCC Confidence 2221111111211 111 124579999987633 334689999999999988776432 345699999999888889 Q ss_pred cchhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Q lcl|NC_016763. 79 SAPINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) Q Consensus 79 sapinrladklnaafaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) ......+||.|-+.|+-|--+..--|- |.-|| .-|+--|.||-- -|-|+-|.- T Consensus 77 ~~~a~~iA~ei~d~F~~g~~L~~Gyi~-~~~~~-~p~i~~~~~~~i------pvr~~~r~d 129 (129) T protein:vir:10 77 IDKPRQIANQLAESIVDGTMLDSGTIY-ESGVV-NPVIKSKSGWFI------PVRFYVRLD 129 (129) T ss_pred cchhhHHHHHHHHhccCCceeeceeec-CCCeE-CCeeecCCceEE------eEEEEEEeC Confidence 999999999999999998777665332 22222 223445667731 133444444 No 7 >protein:vir:80429 Length: 150 # NCBI annotation: BcepGomrgp11 # Family: family:all:5248 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210231;genbank:gi:146329923;genbank:GeneID:5123538 Probab=50.61 E-value=0.33 Score=23.24 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=80.2 Q ss_pred CchhHHHHHHhhhhheeeeccCCcceeeeecccC--CcccCcchhhheeeeccCccccee-----eecccCceEEEeccc Q lcl|NC_016763. 1 MATYFEDLTKAFDTALVTFGMDNDTKVALENIDA--PTSTDTPYLASYMLLSDTEQADLF-----WTEQRAGVYQVDINA 73 (139) Q Consensus 1 matyfedltkafdtalvtfgmdndtkvalenida--ptstdtpylasymllsdteqadlf-----wteqragvyqvdina 73 (139) +-|.|-+--.+-|++-+.=|.. .++-|+.+. |.+-+-+|..--.--.+..||-+= =.-.|.|+--|+|=. T Consensus 12 i~~~f~~~W~~~~~~~~~g~~~---~~~w~~~~~~~pP~g~~~WaRLti~h~~~~qA~~~~~~~gr~~~r~GlI~VQiF~ 88 (150) T protein:vir:80 12 INTMLFDQWSVADWSKVKGGKP---NIAWEGRESARPPDGSAPYVAIFIKHVDGQQASLTDPDMLRRWSRDGLITVQCFG 88 (150) T ss_pred HHHHHhhhhccCcchhhcCCcc---eeeecCcccCCcCCCCCceEEEEEecCCcccccccCCCCcceEeeCcEEEEEEee Confidence 3344444333334444444443 588999988 777777776544444456666642 112468998888832 Q ss_pred c--cccccchhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Q lcl|NC_016763. 74 G--SALGSAPINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) Q Consensus 74 g--salgsapinrladklnaafaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) - +.-|+--+.++||++-.+|..-.-- -+=-|-.++++.+|+ +.||-.--++|-|--= .+| T Consensus 89 p~~~G~G~~la~k~Ad~a~eaFe~~~t~-g~i~f~~as~~eiG~---d~gWYQ~NV~ipF~yd--e~r 150 (150) T protein:vir:80 89 MLSAGQGLEDATYQATIAMRAFEGKQSA-NGIWFRNARIKEIGS---DRGWYQVNMIVEFEYD--EVR 150 (150) T ss_pred eccCCchhhHHHHHHHHHHHHHhccCCC-CCcccccccccccCC---CCceEEEEeEeeeecc--ccC Confidence 2 2245577889999999999753211 122356677888887 6799888887777432 344 No 8 >protein:vir:94921 Length: 125 # NCBI annotation: possible peptidoglycan binding protein # Family: family:all:5248 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239283;genbank:gi:66392065;genbank:GeneID:5076566 Probab=50.19 E-value=0.33 Score=23.22 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=71.8 Q ss_pred chhHHHHHHhhhhheeeeccCCcceeeeecccCCcccCcchhhheeeeccCcccce---eeecccCceEEEecccccccc Q lcl|NC_016763. 2 ATYFEDLTKAFDTALVTFGMDNDTKVALENIDAPTSTDTPYLASYMLLSDTEQADL---FWTEQRAGVYQVDINAGSALG 78 (139) Q Consensus 2 atyfedltkafdtalvtfgmdndtkvalenidaptstdtpylasymllsdteqadl---fwteqragvyqvdinagsalg 78 (139) -||++ ...+.-+-+.. +. +++.+..+| +.|.+ +-+|..--..--+.+||.+ -| .|.|.--|.|=+-...| T Consensus 1 Mt~~q-~r~~I~~r~~a-~~-~~~~I~~~N-~pp~~-~~~W~Rlti~~g~~~~a~iG~~~~--~rtGli~iqiF~p~~~G 73 (125) T protein:vir:94 1 MSYFQ-EKLDIENYFKA-NW-PDTPIFYEN-RTANS-TGTWVRLTIQNGDAFQASNGEVSY--RHPGVVFVQIFTKKEVG 73 (125) T ss_pred CCHHH-HHHHHHHHHHh-CC-CccceeeCC-CCCCC-CCceEEEEeccCcccccccCCcee--eeeeEEEEEeeecCCcC Confidence 34433 22222222221 32 366788899 33433 4444332222233333332 22 35698889988888888 Q ss_pred cchhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeee Q lcl|NC_016763. 79 SAPINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFT 135 (139) Q Consensus 79 sapinrladklnaafaagncfsrneicaevqsvslgplivengwakrplsinfiaft 135 (139) +.-+.++||++.+.|... -.++ -.|-+++....|+ ++||-+--++|-|-+=. T Consensus 74 ~~~~~~~ad~~~~~f~~~-~~g~-i~f~~~~~~~~g~---~~gwyQ~Nv~I~f~~~~ 125 (125) T protein:vir:94 74 SGEALKLADKVDALFRSK-TLGN-IQFKVPQVQKVPS---TTEWYQVNVSTEFYRGS 125 (125) T ss_pred hHHHHHHHHHHHHHHccC-CCCc-eEEeeceecCCCC---CCCEEEEEEEEeeecCC Confidence 999999999999999543 2222 2456666666775 79998888877665444 No 9 >protein:vir:100242 Length: 114 # NCBI annotation: gp71 # Family: family:all:2712 # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355407;genbank:gi:77864697;genbank:GeneID:3725964 Probab=15.74 E-value=2.7 Score=18.23 Aligned_cols=103 Identities=22% Similarity=0.347 Sum_probs=51.9 Q ss_pred CchhHHHHHHhhhhheeeeccCCcceeeeeccc--------CCcccCcchhhheeeeccCccccee-eecccCceEEEec Q lcl|NC_016763. 1 MATYFEDLTKAFDTALVTFGMDNDTKVALENID--------APTSTDTPYLASYMLLSDTEQADLF-WTEQRAGVYQVDI 71 (139) Q Consensus 1 matyfedltkafdtalvtfgmdndtkvalenid--------aptstdtpylasymllsdteqadlf-wteqragvyqvdi 71 (139) |+ +|+ -.-||.-|+ +|.-+.-||+. |-.+|.....-|- =++-+.+.||||+ T Consensus 1 ~~------------~~~-------i~~~l~~~~g~~~~~~~aP~~~~~Py~v-y~rvsg~p~~tL~G~~g~~~~r~QiD~ 60 (114) T protein:vir:10 1 MS------------ALT-------IRDAIGIVGGAKGYVSVASSAAQSPYYV-VSRVSGTRDMALGGATGGKSGMFQIDV 60 (114) T ss_pred Cc------------eee-------eehhhcccccccccCCCCCCCCCCceEE-EEeccCcccccccCCCCcceEEEEEEe Confidence 11 111 122333333 78888899988 8888887654432 2345778999999 Q ss_pred ccccccccchhHHHHhhhhhhhhccccccchhhhhhhhhccccceeeccCc--ccCceeeee Q lcl|NC_016763. 72 NAGSALGSAPINRLADKLNAAFAAGNCFSRNEICAEVQSVSLGPLIVENGW--AKRPLSINF 131 (139) Q Consensus 72 nagsalgsapinrladklnaafaagncfsrneicaevqsvslgplivengw--akrplsinf 131 (139) =|-+-- --..||||.-.+.-.|.-|+-.++ .|.+.-+= .+-+- ..--+||+| T Consensus 61 yA~T~~---eA~~La~~~~~~l~~~~~f~~~~l-~~~~d~ye----~dT~l~Rvsld~si~f 114 (114) T protein:vir:10 61 YAKTYT---EADSLADQIIDRVESTGMFSVGGV-SDLPDDYS----SDTGVFRVSLEISVQF 114 (114) T ss_pred eeCCHH---HHHHHHHHHHhhcccccCeeeecc-ccCCCCCC----cccCceEEEEEEEEeC Confidence 876643 335677776655444443432221 11111000 00000 011356666 No 10 >protein:vir:95155 Length: 151 # NCBI annotation: hypothetical protein ORF015 # Family: family:all:5248 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293422;genbank:gi:148912843;genbank:GeneID:5228230 Probab=5.15 E-value=13 Score=14.45 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=63.3 Q ss_pred CchhHHHHHHhhhhheeeec--cCCcceeeeeccc--CCcccCcch-hhheeee----ccCccccee--------eeccc Q lcl|NC_016763. 1 MATYFEDLTKAFDTALVTFG--MDNDTKVALENID--APTSTDTPY-LASYMLL----SDTEQADLF--------WTEQR 63 (139) Q Consensus 1 matyfedltkafdtalvtfg--mdndtkvalenid--aptstdtpy-lasymll----sdteqadlf--------wteqr 63 (139) |-| |+......-+-++++= -+.-++..-.|++ .+.+-|+|- -.-|.-| .+.+||-|- =.-.| T Consensus 1 ~mt-f~q~R~~i~~~~~~~w~~~~~~~a~~~p~v~~~~~~~~d~P~g~~~WaRLti~h~~~~qA~ls~~~eigggp~~~r 79 (151) T protein:vir:95 1 MIE-FDQVNDEVNALFLATWNAGSAAIAGYVPEIRWQGVQYRDLPDGSKFWVRLSKQTVFEEQATLSTCEGVPGQRKYTA 79 (151) T ss_pred Ccc-HHHHHHHHHHHhhhhcccCchhhhccccccccCCCCCCCCCCCCCceEEEEeecCCCccccccccccCCCCceEee Confidence 666 4555555555554441 1233344444554 223334332 2223334 467777541 11136 Q ss_pred CceEEEecccccccccchhHHHHhhh----hhhhhccccccchhhhhhhhhccccceeeccCcccCceeeeeeeeeeecC Q lcl|NC_016763. 64 AGVYQVDINAGSALGSAPINRLADKL----NAAFAAGNCFSRNEICAEVQSVSLGPLIVENGWAKRPLSINFIAFTARIR 139 (139) Q Consensus 64 agvyqvdinagsalgsapinrladkl----naafaagncfsrneicaevqsvslgplivengwakrplsinfiaftarir 139 (139) .|+--|-|=.-..-|.+- ++|||| -.||-.-.--.+ =-|-.++.+.+|| ++||-.--++|-|-- + .|- T Consensus 80 tGli~VQiF~p~~~G~~L--e~Adkla~~a~eaFe~~~t~g~-i~f~~~s~~eiG~---~~gWyQ~Nv~i~f~y-~-e~~ 151 (151) T protein:vir:95 80 SGLVFVQIFCPKSNTQAF--ELGQKLAKLARNAFRGKSTPGK-VWFRNTRINELPP---EELYERFNVVTEFEY-D-EIG 151 (151) T ss_pred CcEEEEEEeeeccCchhh--HHHHHHHHHHHHHhhccCCCCC-ceeeeeeecccCC---CCCeEEEEeeeeecc-c-ccC Confidence 788777665433223222 777776 455543211111 1244566666776 679988777776621 1 111 Done!