BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_016656.1_cdsid_YP_005087347.1 [gene=CYLG_00010] [protein=DNA maturase beta subunit] [protein_id=YP_005087347.1] [location=3699..5432] (577 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 1103 0.0 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 717 0.0 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 456 e-130 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 455 e-130 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 454 e-129 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 454 e-129 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 453 e-129 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 447 e-127 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 443 e-126 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 417 e-118 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 270 3e-74 gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 268 9e-74 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 265 1e-72 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 264 2e-72 gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: put... 262 9e-72 gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 253 6e-69 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 175 1e-45 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 45 2e-06 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 43 1e-05 gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hyp... 42 2e-05 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 36 0.001 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 33 0.006 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 32 0.029 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 29 0.13 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 29 0.17 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 28 0.20 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 28 0.23 gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: te... 28 0.25 gi|20547|lcl|protein:vir:105155 Length: 580 # NCBI annotation: c... 28 0.31 gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 28 0.35 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 28 0.36 gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unkn... 28 0.39 gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 27 0.59 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 27 0.61 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 27 0.61 gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hyp... 27 0.61 gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: pu... 27 0.93 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 27 0.96 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 27 0.96 gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfW... 26 1.0 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 25 1.9 gi|15217|lcl|protein:vir:2600 Length: 353 # NCBI annotation: gp4... 25 2.2 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 24 4.0 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 24 4.0 gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp... 24 4.0 gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 ... 24 4.1 gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: put... 24 4.3 gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: pu... 24 6.0 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 24 6.2 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/576 (92%), Positives = 558/576 (96%) Query: 1 MNDTLTALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWIT 60 MNDTL ALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWIT Sbjct: 1 MNDTLKALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWIT 60 Query: 61 GAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISF 120 GAFVLWTLFN+AEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISF Sbjct: 61 GAFVLWTLFNDAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISF 120 Query: 121 DVLCSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESIL 180 DVLCSPHQAPSVKSVGITGQ+TGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESIL Sbjct: 121 DVLCSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESIL 180 Query: 181 TPKDDSRIMYLGTPQTTFTVYRKLAERNYRPFVWPARFPKNITPYEGLIAPQLQEDIDNG 240 TPKDDSRIMYLGTPQTTFTVYRKLAER YRPFVWPAR+PK+ITPYEGLIAPQLQEDIDNG Sbjct: 181 TPKDDSRIMYLGTPQTTFTVYRKLAERAYRPFVWPARYPKDITPYEGLIAPQLQEDIDNG 240 Query: 241 AQPGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTSVNPT 300 A+ G TDPDRFDD+DL QRES+MGRSNFMLQFMLDT+LSDAEKFPLKMADLV+TSVNPT Sbjct: 241 AESGTVTDPDRFDDDDLQQRESAMGRSNFMLQFMLDTTLSDAEKFPLKMADLVITSVNPT 300 Query: 301 EAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGSDETA 360 EAPDNVIWCSDP+N+IKD PTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRG+DETA Sbjct: 301 EAPDNVIWCSDPQNIIKDAPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGTDETA 360 Query: 361 ACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSELFKK 420 ACYLSQKNGFLYLHE+RAYRDGYSD TLLDILKGCKKYN +TLVVETNFGDGIVSELFKK Sbjct: 361 ACYLSQKNGFLYLHEMRAYRDGYSDATLLDILKGCKKYNATTLVVETNFGDGIVSELFKK 420 Query: 421 HLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSPESRL 480 HLQQTKQ IFVDEVRANVRKEDRIID+LEPVLNQHRL+VDRGVIDWDYSSNKD PESRL Sbjct: 421 HLQQTKQAIFVDEVRANVRKEDRIIDSLEPVLNQHRLIVDRGVIDWDYSSNKDCPPESRL 480 Query: 481 LYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWNDILEG 540 LYMLFYQMSRMCRMK+AVKHDDRLDCLAQGVKYFTDSLSISAQ QI+L+K+EEW DIL+G Sbjct: 481 LYMLFYQMSRMCRMKFAVKHDDRLDCLAQGVKYFTDSLSISAQEQINLRKREEWEDILQG 540 Query: 541 FLDDPQSSANHLVLGMDLEQRQQARLKTSNKDAPNW 576 FLDDPQSSANHLVLGMD+ QRQQAR KT+ K+ PNW Sbjct: 541 FLDDPQSSANHLVLGMDVNQRQQARGKTTGKEVPNW 576 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/570 (60%), Positives = 433/570 (75%), Gaps = 8/570 (1%) Query: 8 LQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWT 67 ++GDFK FL +W +LDLP PTRAQ AIADYLQ GPKRLQI AFRGVGKSWIT AFVLW Sbjct: 10 MRGDFKFFLSLVWRELDLPKPTRAQLAIADYLQHGPKRLQISAFRGVGKSWITAAFVLWV 69 Query: 68 LFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFDV-LCSP 126 LF + ++KIM+ISASKERADN SIF QKLI++ WL HLRP+ D RWSRISFDV P Sbjct: 70 LFVDPDRKIMVISASKERADNFSIFCQKLILDIEWLSHLRPRDSDQRWSRISFDVGPAKP 129 Query: 127 HQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDS 186 HQAPSVKSVGITGQMTGSRA LM+ DD+EVP NS T++ REKLLQL +E+ESIL P DD+ Sbjct: 130 HQAPSVKSVGITGQMTGSRAHLMVFDDVEVPANSATDMQREKLLQLVSESESILVPDDDA 189 Query: 187 RIMYLGTPQTTFTVYRKLAERNYRPFVWPARFPKNITPYEGLIAPQLQEDIDNGAQPGES 246 RIM+LGTPQ+TFT+YRKLAER+YRPFVWPAR+P++++ YEGL+APQL D++ + Sbjct: 190 RIMFLGTPQSTFTIYRKLAERSYRPFVWPARYPRDLSKYEGLLAPQLVADLEKDPELTWK 249 Query: 247 TDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTSVNPTEAPDNV 306 RF++ +L++RES+MGRSNFMLQFMLDTSLSDAEKFPLK DL+VT + E + Sbjct: 250 PTDTRFNELNLMERESAMGRSNFMLQFMLDTSLSDAEKFPLKFQDLIVTPLG-AECAEAY 308 Query: 307 IWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGSDETAACYLSQ 366 W +DPR + K+L VGLPGD FY PM + PY ETI SVDPSGRG+DET A LSQ Sbjct: 309 AWSADPRYMRKELNPVGLPGDRFYGPMYIDEGIVPYSETIVSVDPSGRGTDETVAVVLSQ 368 Query: 367 KNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSELFKKHLQQTK 426 NG++++ +++A+RDGYSD TL DI++ K+Y S L+VE+NFGDG+++ELFK+H+ Q Sbjct: 369 ANGYIFVRDMKAFRDGYSDETLSDIVRLGKRYKASKLLVESNFGDGMITELFKRHISQMG 428 Query: 427 QNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSPESRLLYMLFY 486 + +EVRA+ RKE+RII+ LEPV+NQH+L++D V ++DYSSN D++PE RL YML Y Sbjct: 429 GGMDTEEVRASARKEERIIETLEPVMNQHKLIIDPKVWEYDYSSNPDAAPEKRLEYMLGY 488 Query: 487 QMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWNDILEGFLDDPQ 546 QMSRMCR K AVKHDDR+D L+QGV+Y+ D+++ SA Q L+K EEW ++ F P Sbjct: 489 QMSRMCREKGAVKHDDRVDALSQGVQYYVDAVAQSAFKQQALRKHEEWKAMMTAFDQTPH 548 Query: 547 SSANHLVLGMDLEQRQQARLKTSNKDAPNW 576 + + LVLG Q + TS D W Sbjct: 549 LATDALVLG------QSFKSLTSRVDTGVW 572 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 456 bits (1174), Expect = e-130, Method: Compositional matrix adjust. Identities = 254/565 (44%), Positives = 357/565 (63%), Gaps = 22/565 (3%) Query: 4 TLTALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGP-KRLQIQAFRGVGKSWITGA 62 + L+GDF FL LW L+LP PT+ Q +A L +G K+ +QAFRG+GKS+IT A Sbjct: 11 VVAQLKGDFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCA 70 Query: 63 FVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFDV 122 FV+WTL+ + + KI+I+SASKERAD SIF++ +I P+L L+P+ R S ISFDV Sbjct: 71 FVVWTLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQ-RDSVISFDV 129 Query: 123 L-CSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILT 181 P +PSVKSVGITGQ+TGSRAD++I DD+E+P NS T+ REKL L E ++L Sbjct: 130 GPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLK 189 Query: 182 PKDDSRIMYLGTPQTTFTVYRKLAE-RNYRPFVWPARFPKNITP---YEGLIAPQLQEDI 237 P SR++YLGTPQT T+Y++L + R Y +WPA +P++ Y +AP L+E+ Sbjct: 190 PLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYGERLAPMLREEF 249 Query: 238 DNGAQ--PGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVT 295 ++G + G+ TDP RFD EDL +RE G++ F LQFML+ +LSDAEK+PL++ D +V Sbjct: 250 NDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDAIVC 309 Query: 296 SVNPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRG 355 ++ +AP + W + +N ++LP VGL GD +S YQ+ I +DPSGRG Sbjct: 310 GLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQYQQRILVIDPSGRG 369 Query: 356 SDETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVS 415 DET L NG++YL E +RDGYSD TL + K K++ V T+V E+NFGDG+ Sbjct: 370 KDETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFESNFGDGMFG 429 Query: 416 ELFKKHLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSS 475 ++F L + ++E+RA KE RI D LEPVL+ HRLV+ VI DY + +D+ Sbjct: 430 KVFSPVLLK-HHAAALEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIREDYQTARDAD 488 Query: 476 PESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWN 535 + + Y LFYQ++RM R K AV HDDRLD LA GV++ ++ + A +K + E Sbjct: 489 GKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDA-----VKVEAE-- 541 Query: 536 DILEGFLDD----PQSSANHLVLGM 556 +LE FL++ P SA H+V M Sbjct: 542 -VLEAFLEEHMEHPIHSAGHVVTAM 565 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 455 bits (1171), Expect = e-130, Method: Compositional matrix adjust. Identities = 247/563 (43%), Positives = 356/563 (63%), Gaps = 14/563 (2%) Query: 5 LTALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSG-PKRLQIQAFRGVGKSWITGAF 63 L A++ DF LFL LW L+LP PTR Q +A L +G +R +QAFRG+GKS+IT AF Sbjct: 12 LLAMKNDFVLFLMVLWRALNLPEPTRCQKDMARKLAAGDERRFILQAFRGIGKSFITCAF 71 Query: 64 VLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFDV- 122 V+W L+NN + K MI+SASKERAD SIF++++I P+L L+P+ + R S ISFDV Sbjct: 72 VVWKLWNNPQLKFMIVSASKERADANSIFIKRIIDLLPFLHELKPRPEQ-RDSVISFDVG 130 Query: 123 LCSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTP 182 L P +PSVKSVGITGQ+TGSRAD++I DD+EVP NS T+ R++L +L E ++IL P Sbjct: 131 LAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDRLGELVKEFDAILKP 190 Query: 183 KDDSRIMYLGTPQTTFTVYRKLAERNYRPFVWPARFPKNIT---PYEGLIAPQLQEDIDN 239 + I+YLGTPQ T+YR+L R Y+ +WPAR+PK++ Y +AP L++++ Sbjct: 191 --NGTIIYLGTPQCEMTLYRELENRGYKTTIWPARYPKDMNDLETYGNRLAPMLKDELME 248 Query: 240 GAQPG--ESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTSV 297 + + TDP RFDDEDL +RE S G++ F LQFML+ +LSDAEK+PLK+ D +V ++ Sbjct: 249 NPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDFIVAAL 308 Query: 298 NPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGSD 357 +AP W +P+N+++++P VGL GD ++ Y I ++DPSGRG D Sbjct: 309 EVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQASYTSKIMAIDPSGRGKD 368 Query: 358 ETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSEL 417 ET C L NG++YL E +R GY D+TL + K K++NV+ ++ E NFGDG+ ++ Sbjct: 369 ETGYCVLYFLNGYIYLMETGGFRGGYEDSTLEALAKVAKRWNVNEVLCEGNFGDGMFLKI 428 Query: 418 FKKHLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSPE 477 F L + + E ++ +KE RI D LEPV+ HR+VV I DY + ++ Sbjct: 429 FSPVLNRVHRCALT-ETKSTGQKEMRIADTLEPVMGAHRIVVMESAIQKDYQTARNVDGT 487 Query: 478 SRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWNDI 537 + Y +FYQ++R+ R + A+ HDDRLD A GV YF + L +QA D EW + Sbjct: 488 HDIKYSMFYQLTRLTRERGALAHDDRLDAFAIGVAYFVEMLEKDSQAGAD-DTTAEWLEE 546 Query: 538 LEGFLDDPQSSANHL-VLGMDLE 559 + G D Q+ +H+ +L D+E Sbjct: 547 MLG-KDALQADQSHVHILKGDVE 568 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 454 bits (1168), Expect = e-129, Method: Compositional matrix adjust. Identities = 252/562 (44%), Positives = 352/562 (62%), Gaps = 22/562 (3%) Query: 4 TLTALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGP-KRLQIQAFRGVGKSWITGA 62 + L+GDF FL LW L+LP PT+ Q +A L +G K+ +QAFRG+GKS+IT A Sbjct: 11 VVAQLKGDFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCA 70 Query: 63 FVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFDV 122 FV+W+L+ + + KI+I+SASKERAD SIF++ +I P+L L+P+ R S ISFDV Sbjct: 71 FVVWSLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQ-RDSVISFDV 129 Query: 123 L-CSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILT 181 P +PSVKSVGITGQ+TGSRAD++I DD+E+P NS T REKL L E ++L Sbjct: 130 GPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLK 189 Query: 182 PKDDSRIMYLGTPQTTFTVYRKLAE-RNYRPFVWPARFPKNITP---YEGLIAPQLQEDI 237 P SR++YLGTPQT T+Y++L + R Y +WPA +P+ Y +AP L+ + Sbjct: 190 PLTSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLRAEY 249 Query: 238 DNG--AQPGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVT 295 D A G TDP RFD +DL +RE G++ F LQFML+ +LSDAEK+PL++ D +V Sbjct: 250 DENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDAIVA 309 Query: 296 SVNPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRG 355 +++ +AP + W + +N+I+DLP VGL GD ++ YQ+ I +DPSGRG Sbjct: 310 ALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQKILVIDPSGRG 369 Query: 356 SDETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVS 415 DET L NG++YL E +RDGYSD TL + K K++ V T+V E+NFGDG+ Sbjct: 370 KDETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQTVVYESNFGDGMFG 429 Query: 416 ELFKKHLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSS 475 ++F L + N ++E+RA KE RI D LEPV+ HRLV+ VI DY S +D Sbjct: 430 KVFSPILLK-HHNCAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDEVIRADYQSARDVD 488 Query: 476 PESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWN 535 + + Y LFYQM+R+ R K A+ HDDRLD LA G++Y +S+ Q+D K E Sbjct: 489 GKYDVKYSLFYQMTRITREKGALAHDDRLDALALGIEYLRESM------QLDSVKVE--G 540 Query: 536 DILEGFLDD----PQSSANHLV 553 ++L FL++ P SA H++ Sbjct: 541 EVLADFLEEHMMRPTVSATHII 562 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 454 bits (1168), Expect = e-129, Method: Compositional matrix adjust. Identities = 251/562 (44%), Positives = 353/562 (62%), Gaps = 22/562 (3%) Query: 4 TLTALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGP-KRLQIQAFRGVGKSWITGA 62 + L+GDF FL LW L+LP PT+ Q +A L +G K+ +QAFRG+GKS+IT A Sbjct: 11 VVAQLKGDFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCA 70 Query: 63 FVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFDV 122 FV+W+L+ + + KI+I+SASKERAD SIF++ +I P+L L+P+ R S ISFDV Sbjct: 71 FVVWSLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLSELKPRPGQ-RDSVISFDV 129 Query: 123 L-CSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILT 181 +P +PSVKSVGITGQ+TGSRAD++I DD+E+P NS T REKL L E ++L Sbjct: 130 GPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLK 189 Query: 182 PKDDSRIMYLGTPQTTFTVYRKLAE-RNYRPFVWPARFPKNITP---YEGLIAPQLQEDI 237 P SR++YLGTPQT T+Y++L + R Y +WPA +P+ Y +AP L+ + Sbjct: 190 PLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLRAEY 249 Query: 238 DNG--AQPGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVT 295 D A G TDP RFD +DL +RE G++ F LQFML+ +LSDAEK+PL++ D +V Sbjct: 250 DENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDAIVA 309 Query: 296 SVNPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRG 355 +++ +AP + W + +N+I+DLP VGL GD ++ YQ+ I +DPSGRG Sbjct: 310 ALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQKILVIDPSGRG 369 Query: 356 SDETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVS 415 DET L NG++YL E +RDGYSD TL + K K++ V T+V E+NFGDG+ Sbjct: 370 KDETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQTVVYESNFGDGMFG 429 Query: 416 ELFKKHLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSS 475 ++F L + N ++E+RA KE RI D LEPV+ HRLV+ VI DY S +D Sbjct: 430 KVFSPILLK-HHNCAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDEVIRADYQSARDVD 488 Query: 476 PESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWN 535 + + Y LFYQM+R+ R K A+ HDDRLD LA G++Y +S+ Q+D K E Sbjct: 489 GKHDVKYSLFYQMTRITREKGALAHDDRLDALALGIEYLRESM------QLDSVKVE--G 540 Query: 536 DILEGFLDD----PQSSANHLV 553 ++L FL++ P +A H++ Sbjct: 541 EVLADFLEEHMMRPTVAATHII 562 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 453 bits (1166), Expect = e-129, Method: Compositional matrix adjust. Identities = 254/564 (45%), Positives = 356/564 (63%), Gaps = 22/564 (3%) Query: 5 LTALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGP-KRLQIQAFRGVGKSWITGAF 63 + L+GDF FL LW L LP PT+ Q +A L +G K+ +QAFRG+GKS+IT AF Sbjct: 13 IAQLKGDFVAFLFVLWKALALPPPTKCQIDMARCLANGDNKKFILQAFRGIGKSFITCAF 72 Query: 64 VLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFDVL 123 V+WTL+ + + KI+I+SASKERAD SIF++ +I P+L L+P+ R S ISFDV Sbjct: 73 VVWTLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQ-RDSVISFDVG 131 Query: 124 -CSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTP 182 P +PSVKSVGITGQ+TGSRAD++I DD+E+P NS T+ REKL L E ++L P Sbjct: 132 PAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLKP 191 Query: 183 KDDSRIMYLGTPQTTFTVYRKLAE-RNYRPFVWPARFPKNITP---YEGLIAPQLQEDID 238 SR++YLGTPQT T+Y++L + R Y +WPA +P++ Y +AP L+E+ + Sbjct: 192 LPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYGDRLAPMLREEFN 251 Query: 239 NGAQ--PGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTS 296 +G + G+ TDP RFD EDL +RE G++ F LQFML+ +LSDAEK+PL++ D +V Sbjct: 252 DGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDAIVCG 311 Query: 297 VNPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGS 356 ++ +AP + W + +N ++LP VGL GD +S YQ+ I +DPSGRG Sbjct: 312 LDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQYQQRILVIDPSGRGK 371 Query: 357 DETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSE 416 DET L NG++YL E +RDGYSD TL + K K++ V T+V E+NFGDG+ + Sbjct: 372 DETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFESNFGDGMFGK 431 Query: 417 LFKKHLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSP 476 +F L + ++E+RA KE RI D LEPVL+ HRLV+ VI DY + +D+ Sbjct: 432 VFSPVLLK-HHAAAMEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIREDYQTARDADG 490 Query: 477 ESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWND 536 + + Y LFYQ++RM R K AV HDDRLD LA GV++ ++ + A +K + E Sbjct: 491 KHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDA-----VKVEAE--- 542 Query: 537 ILEGFLDD----PQSSANHLVLGM 556 +LE FL++ P SA H+V M Sbjct: 543 VLEAFLEEHMEHPIHSAGHVVTSM 566 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 447 bits (1150), Expect = e-127, Method: Compositional matrix adjust. Identities = 246/548 (44%), Positives = 344/548 (62%), Gaps = 15/548 (2%) Query: 8 LQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGP-KRLQIQAFRGVGKSWITGAFVLW 66 ++ DF FL LW L LP PTR Q +A L +G +R +QAFRG+GKS+IT AFV+W Sbjct: 5 MKADFVFFLFVLWKALSLPVPTRCQIDMAKKLSAGDNRRFILQAFRGIGKSFITCAFVVW 64 Query: 67 TLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFDVL-CS 125 L+NN + K MI+SASKERAD SIF++++I P LK L+PK R + ISFDV Sbjct: 65 KLWNNPDLKFMIVSASKERADANSIFIKRIIDLMPQLKELKPKQGQ-RDAVISFDVGPAK 123 Query: 126 PHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDD 185 P +PSVKSVGITGQ+TGSRAD++I DD+EVP NS T+ R++L +L E ++IL P Sbjct: 124 PDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDRLSELVKEFDAILKP--G 181 Query: 186 SRIMYLGTPQTTFTVYRKLAERNYRPFVWPARFP---KNITPYEGLIAPQLQEDIDNGAQ 242 I+YLGTPQ T+YR+L R Y +WPAR+P K+ Y +AP LQ +++ + Sbjct: 182 GTIIYLGTPQNEMTLYRELEGRGYTTTIWPARYPRDRKDWQSYGDRLAPMLQAELEEDPE 241 Query: 243 P--GESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTSVNPT 300 TD RFDD DL +RE S G++ F LQFML+ +LSDAEK+PLK+ DL+V ++P Sbjct: 242 SFYWRPTDEVRFDDTDLKERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDLIVADLDPA 301 Query: 301 EAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGSDETA 360 +P W +P+N +D+P VGL GD +++ + ++ Y + I +DPSGRG DET Sbjct: 302 SSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVGSAFSSYTQKILVIDPSGRGKDETG 361 Query: 361 ACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSELFKK 420 L Q NG+++ EV R GY D+TL + K +K+ V+ V+E NFGDG+ ELFK Sbjct: 362 YAVLYQLNGYIFAMEVGGMRGGYEDSTLEALAKIGRKWKVNEYVIEGNFGDGMYLELFKP 421 Query: 421 HLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSPESRL 480 + V EV++ +KE RI D LEP++ HRL+V+ I DY S D Sbjct: 422 VAARIHPAA-VTEVKSKGQKELRICDVLEPIMGSHRLIVNAAAIVQDYQSASDKDGVRNP 480 Query: 481 LYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWNDILEG 540 +Y LFYQM+R+ R + A+ HDDRLD LA GV++F +S++ A + + + EEW LE Sbjct: 481 IYSLFYQMTRISRERGALAHDDRLDALAIGVQFFVESMAKDAN-KGEREVTEEW---LEE 536 Query: 541 FLDDPQSS 548 +++P+ Sbjct: 537 QMENPRKG 544 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 443 bits (1139), Expect = e-126, Method: Compositional matrix adjust. Identities = 234/527 (44%), Positives = 336/527 (63%), Gaps = 10/527 (1%) Query: 5 LTALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSG-PKRLQIQAFRGVGKSWITGAF 63 + L+GDF FL LW L+LP PT+ Q +A L G K+ +QAFRG+GKS+IT AF Sbjct: 12 VAQLKGDFVAFLFVLWKALNLPKPTKCQIDMARTLADGDHKKFILQAFRGIGKSFITCAF 71 Query: 64 VLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFDV- 122 V+W L+ + + K++I+SASKERAD SIF++ +I P+L L+P+ R S ISFDV Sbjct: 72 VVWVLWRDPQLKVLIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQ-RDSVISFDVG 130 Query: 123 LCSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTP 182 L P +PSVKSVGITGQ+TGSRAD++I DD+EVPGNS T REKL L TE ++L P Sbjct: 131 LAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTSSAREKLWTLVTEFAALLKP 190 Query: 183 KDDSRIMYLGTPQTTFTVYRKLAE-RNYRPFVWPARFPKNITP---YEGLIAPQLQEDID 238 SR++YLGTPQT T+Y++L + + Y +WPA++P+N Y +AP L+ + D Sbjct: 191 LPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQYPRNDAEALYYGDRLAPMLKAEYD 250 Query: 239 NGAQ--PGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTS 296 G + G+ TDP RFD +DL +RE G++ + LQFML+ +LSDAEK+PL++ D +V + Sbjct: 251 EGFELLRGQPTDPVRFDTDDLRERELEYGKAGYTLQFMLNPNLSDAEKYPLRLRDAIVCA 310 Query: 297 VNPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGS 356 V+P AP + W + +N ++LP VGL GD +S YQ I +DPSGRG Sbjct: 311 VDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHTCSSRTAEYQSKILVIDPSGRGK 370 Query: 357 DETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSE 416 DET L NG++YL EV +R GY D TL + K K++ V T+V E+NFGDG+ + Sbjct: 371 DETGYAVLYSLNGYIYLMEVGGFRGGYDDATLEKLAKKAKQWKVQTVVHESNFGDGMFGK 430 Query: 417 LFKKHLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSP 476 +F L + ++E+RA KE RI D +EP++ H+L++ VI DY +++D Sbjct: 431 IFSPVLLK-HHKAALEEIRAKGMKEMRICDTIEPLMGSHKLIIRDEVIREDYQTSRDLDG 489 Query: 477 ESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQ 523 + + Y FYQM+RM R + AV HDDRLD +A G+++ + + + ++ Sbjct: 490 KHDVRYSAFYQMTRMTRERGAVAHDDRLDAIALGIEWLREGMLVDSK 536 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 417 bits (1071), Expect = e-118, Method: Compositional matrix adjust. Identities = 231/557 (41%), Positives = 335/557 (60%), Gaps = 14/557 (2%) Query: 3 DTLTALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSG-PKRLQIQAFRGVGKSWITG 61 D L ++ F FL LW L+LP PT+ Q +A L +G +R +QAFRG+GKS+IT Sbjct: 9 DDLELIKRSFVAFLFVLWRALNLPKPTKCQIDMAKKLSAGDERRFILQAFRGIGKSFITC 68 Query: 62 AFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFD 121 AFV+W L+NN + K MI+SASKERAD S+F++++I P+L L+P R S ++FD Sbjct: 69 AFVVWKLWNNPDLKFMIVSASKERADANSVFIKRIIDLLPFLHELKPGPGQ-RDSSLAFD 127 Query: 122 VL-CSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESIL 180 V P +PSVKSVGITGQ+TGSRAD++I DD+EVP NS T+ R+ L +L E ++IL Sbjct: 128 VGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQTARDHLGELVKEFDAIL 187 Query: 181 TPKDDSRIMYLGTPQTTFTVYRKLAERNYRPFVWPARFPKNIT---PYEGLIAPQLQEDI 237 P I+YLGTPQT T+YR+L R Y +WPAR+PK+ Y +AP L ++ Sbjct: 188 KP--GGTIIYLGTPQTEMTLYRELEGRGYVTTIWPARYPKDQADWDSYGPRLAPMLAAEL 245 Query: 238 D-NGAQPGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTS 296 +G+ TD RFDD+DL +RE S G+ F LQFML+ +LSD EK+PLK+ D +V + Sbjct: 246 QADGSLFWAPTDEVRFDDKDLRERELSYGKGGFALQFMLNPNLSDMEKYPLKLRDFIVGT 305 Query: 297 VNPTEAPDNVIWCSDPRNVIKDLPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGS 356 + P +IW + N K +P VGL GD F+ + Y + I +DPSGRG Sbjct: 306 FAQDKGPTTLIWMPNAANECKGVPVVGLKGDRFHRYESVGQATASYAQKILVIDPSGRGK 365 Query: 357 DETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSE 416 DET L Q NG+++L + +R GY D L + K + V+ +VVE NFGDG+ + Sbjct: 366 DETGYAVLYQLNGYIFLMDAGGFRGGYEDTVLQALANIAKIHKVNEIVVEGNFGDGMYIK 425 Query: 417 LFKKHLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSP 476 L + T + EV++ +KE RI D LEPVL H+LV+ +I+ DY + ++ Sbjct: 426 LLAPVVTATFP-CAITEVKSKGQKELRICDVLEPVLGSHKLVIQESLIEKDYRTALNADG 484 Query: 477 ESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWND 536 + Y L YQ++R+ R + ++ HDDRLD LA GV++FT++L ++ + + E + Sbjct: 485 TTDTSYSLLYQLTRITRERGSLAHDDRLDALAIGVQFFTEALERDSK----VGESEMLQE 540 Query: 537 ILEGFLDDPQSSANHLV 553 LE ++D + L+ Sbjct: 541 FLESHMEDALMGHDRLL 557 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 270 bits (691), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 178/555 (32%), Positives = 287/555 (51%), Gaps = 32/555 (5%) Query: 15 FLQALWDQLDLPSP--TRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTLFNNA 72 F Q + + L +P R Q I +L G K ++A RG K+ I + ++ + + Sbjct: 35 FAQVVINNLITGNPDLNRVQADILKFLFGGNKYRMVEAQRGQAKTTIAAIYAVFRIIHEP 94 Query: 73 EKKIMIISASKERADNMSIFLQKLIIETPWLKHLRP---KSDDARWSRISFDV---LCSP 126 K+IMI+S + +RA+ ++ ++ K+ +L+ + P D A S F++ L Sbjct: 95 HKRIMIVSQTAKRAEEIAGWVIKIFRGLDFLEFMLPDIYAGDKA--SIKGFEIHYTLRGS 152 Query: 127 HQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDS 186 ++PSV I M G+RAD+++ DD+E NS T R L L E ESI D Sbjct: 153 DKSPSVACYSIEAGMQGARADIILADDVESLQNSRTAAGRALLEDLTKEFESINQFGD-- 210 Query: 187 RIMYLGTPQTTFTVYRKLAERNYRPFVWPARFP--KNITPYEGLIAPQLQED-IDN---- 239 I+YLGTPQ+ ++Y L R Y+ +WP R+P + Y +AP +++D ID+ Sbjct: 211 -IIYLGTPQSVNSIYNNLPARGYQIRIWPGRYPTLEQEACYGDFLAPMIRQDMIDDPSLR 269 Query: 240 ------GAQPGESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLV 293 G Q G T P+ +DDE L+++E S G + F LQFML+T L DA+++PL++ L+ Sbjct: 270 SGYGIDGTQ-GAPTCPEMYDDEKLIEKEISQGTAKFQLQFMLNTRLMDADRYPLRLNQLI 328 Query: 294 VTSVNPTEAPDNVIWCSDPRNVIKDLPTVG-LPGDYFYSPMQLQGEWTPYQETICSVDPS 352 + S P+ W +D N+I D P G P DY Y P+ EW P Q + +DP+ Sbjct: 329 LMSFGTDVVPEMPTWSNDSVNLISDAPRFGNKPTDYLYRPVPRPYEWRPIQRRLMYIDPA 388 Query: 353 GRG--SDETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFG 410 G G DET + F+Y+++V GYS++ L I++ K+ V + +E NFG Sbjct: 389 GGGKNGDETGVAIVFLLGTFIYVYKVFGVPGGYSESALSRIVREAKQAEVKEVFIEKNFG 448 Query: 411 DGIVSELFKKHLQQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSS 470 G + K + ++ + + E A +KE RII+ LEP+++ HR++ + +I D S Sbjct: 449 HGAFEAVIKPYFER-EWPAELKEDYATGQKEARIIETLEPLMSAHRIIFNAEMIKQDIDS 507 Query: 471 NKDSSPESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKK 530 + E R+ Y LF QMS + K ++HDDRLD L ++ T + +I+ + Sbjct: 508 VQHYPLEVRMSYSLFAQMSNITLEKGCLRHDDRLDALYGAIRQLTSQIDYDEANRINRLR 567 Query: 531 QEEWNDILEGFLDDP 545 +E + LE + DP Sbjct: 568 AKEMREYLE-MMTDP 581 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 268 bits (686), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 177/550 (32%), Positives = 278/550 (50%), Gaps = 35/550 (6%) Query: 27 SPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTLFNNAEKKIMIISASKERA 86 S T Q IA+++Q GP+R + A RG KS I F LW L + +++++S ++++A Sbjct: 34 SMTWMQEDIAEFMQYGPQRSMVAAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKA 93 Query: 87 DNMSIFLQKLIIETPWLKHLRP-KSDDARWSRISFDV---LCSPHQAPSVKSVGITGQMT 142 + + LI P L++L P K R S + FDV L ++ SV +GIT + Sbjct: 94 EENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQ 153 Query: 143 GSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTVYR 202 G R DL+I DDIE N +T R KL+ L E SI+ ++ RI+YLGTPQT ++Y Sbjct: 154 GYRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRN-GRILYLGTPQTRESIYN 212 Query: 203 KLAERNYRPFVWPARFPK--NITPYEGLIAPQLQED---IDNGAQPGE--------STDP 249 L R + VWP RFPK + Y +AP + E + + Q G STDP Sbjct: 213 TLPGRGFTVRVWPGRFPKASELPKYGDALAPSILERMALLGDRCQTGRGLDGTRGWSTDP 272 Query: 250 DRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTSVNPTEAPDNVIWC 309 +R+ +E+L +E G F LQFML+TSLSDA + LK+ DL+V + + P++V W Sbjct: 273 ERYSEEELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWA 332 Query: 310 SDPRNVIKDLP-TVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGSDETAACYLSQKN 368 +DPR I DLP + + P + + + +DP+G G DE A Sbjct: 333 ADPRFKI-DLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVG 391 Query: 369 GFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSELFKKHL------ 422 ++++ ++ G S++ L +++ CK + V ++VE N G G V++L + H Sbjct: 392 PYIHVVAWGGFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPD 451 Query: 423 -QQTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSPESRLL 481 +Q + VDE +KE RII+ + PV+ +HRLV+ R ++ D K + R + Sbjct: 452 GKQRLAGVGVDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDV 511 Query: 482 YMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWND--ILE 539 YQM + + ++ DDRLD L V L ID K+++ D +++ Sbjct: 512 RSGLYQMHNITSDRGSLTKDDRLDALEGLVAELMGFLV------IDEVKEQQRRDAAVVQ 565 Query: 540 GFLDDPQSSA 549 FL +P + Sbjct: 566 EFLRNPMGTG 575 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 265 bits (676), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 164/534 (30%), Positives = 276/534 (51%), Gaps = 23/534 (4%) Query: 26 PSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTLFNNAEKKIMIISASKER 85 P R Q I +L G K I+A RG+ K+ ++ + ++ + + K+IM++S + +R Sbjct: 48 PHLIRMQADILKFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKR 107 Query: 86 ADNMSIFLQKLIIETPWLKHLRPKSDDA-RWSRISFDV---LCSPHQAPSVKSVGITGQM 141 A+ ++ ++ K+ +L+ + P R S +F++ L ++PSV I M Sbjct: 108 AEEIAGWVVKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGM 167 Query: 142 TGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTVY 201 G+RAD+++ DD+E N+ T R L +L E ESI D I+YLGTPQ ++Y Sbjct: 168 QGARADIILADDVESMQNARTAAGRALLEELTKEFESINQFGD---IIYLGTPQNVNSIY 224 Query: 202 RKLAERNYRPFVWPARFP--KNITPYEGLIAPQLQEDI-DNGA---------QPGESTDP 249 L R Y +W AR+P + Y +AP + +D+ DN A G P Sbjct: 225 NNLPARGYSVRIWTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAP 284 Query: 250 DRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTSVNPTEAPDNVIWC 309 + +DDE L+++E S G + F LQFML+T + DA+++PL++ +L+ TS E P W Sbjct: 285 EMYDDEVLIEKEISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWS 344 Query: 310 SDPRNVIKDLPTVG-LPGDYFYSPMQLQGEWTPYQETICSVDPSGRG--SDETAACYLSQ 366 +D N+I D P G P D+ Y P+ EW I +DP+G G DET + Sbjct: 345 NDSINIIGDAPKYGNKPTDFMYRPVARPYEWGAVSRKIMYIDPAGGGKNGDETGVAIVFL 404 Query: 367 KNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSELFKKHLQQTK 426 F+Y+++ GY +++L I++ K+ V + +E NFG G + K + ++ + Sbjct: 405 HGTFIYVYQCFGVPGGYRESSLNRIVQAAKQAGVKEVFIEKNFGHGAFEAVIKPYFER-E 463 Query: 427 QNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSPESRLLYMLFY 486 + ++E A +KE RII+ LEP++ HRL+ + ++ D+ S + E R+ Y LF Sbjct: 464 WPVTLEEDYATGQKELRIIETLEPLMAAHRLIFNAEMVKSDFESVQHYPLELRMSYSLFN 523 Query: 487 QMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWNDILEG 540 QMS + K +++HDDRLD L ++ T + +I+ + +E D + Sbjct: 524 QMSNITIEKNSLRHDDRLDALYGAIRQLTSQIDYDEVTRINRLRAQEMRDYIHA 577 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 264 bits (674), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 165/539 (30%), Positives = 266/539 (49%), Gaps = 44/539 (8%) Query: 11 DFKLFL--QALWDQLDLPSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTL 68 D LFL + W QLD IAD++Q P + + A RG KS I +V+W + Sbjct: 26 DAMLFLGFKMTWMQLD----------IADFMQDSPNKAMVAAQRGEAKSTIACIYVVWCI 75 Query: 69 FNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDA-RWSRISFDV---LC 124 + + M++S S ++A+ + KLI+ L +LRP++ R S SFDV L Sbjct: 76 VRDPRTRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALK 135 Query: 125 SPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKD 184 ++ S+ +GIT + G RAD++I DDIE N +T R KL + E SI T Sbjct: 136 GVEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT--- 192 Query: 185 DSRIMYLGTPQTTFTVYRKLAERNYRPFVWPARFPK--NITPYEGLIAPQLQEDI----D 238 +I+YLGTPQ+ ++Y L R + +WP RFP Y +AP + E I + Sbjct: 193 HGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQERYGDWLAPSILERIARLEE 252 Query: 239 NGAQP----------GESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLK 288 G P G + DP R+++EDL+ +E G F LQ+MLDTSL+D ++ LK Sbjct: 253 RGHNPRTGKGLDGTRGWAADPQRYNEEDLIDKELDQGAEGFQLQYMLDTSLADEQRMQLK 312 Query: 289 MADLVVTSVNPTEAPDNVIWCSDPRNVIK-DLPTVGLPGDYFYSPMQLQGEWTPYQETIC 347 + DL+ P+ V W +D R +K D + Y P + G W P Q+ Sbjct: 313 LRDLLFIDATHESVPEQVAWAADERFKLKFDAHRFPIIKPELYLPALMAGGWAPLQQMTM 372 Query: 348 SVDPSGRGSDETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVET 407 VDP+G G DE + ++++ + ++ G+++ L + +Y V + VE Sbjct: 373 FVDPAGDGGDELSYAVGGTLGPYIHVVSIGGWKGGFAEENLEKCIALAARYGVKVIYVEK 432 Query: 408 NFGDGIVSELFKKHLQQTK--------QNIFVDEVRANVRKEDRIIDALEPVLNQHRLVV 459 N G G V +LF+ +++ + I +++ + + +KE RIID L P++ +HRL+ Sbjct: 433 NLGAGAVGQLFRNYMRSINPDTGKPRYEGIGIEDRQKSGQKERRIIDTLRPIMQRHRLIF 492 Query: 460 DRGVIDWDYSSNKDSSPESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSL 518 +D DY + + + R +F+Q+ + + ++ DDR+D L V+ T SL Sbjct: 493 HVSAMDSDYVACQQYPADKRTERSVFHQIHNITTDRGSLPKDDRIDALEGLVRELTPSL 551 >gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877482;genbank:gi:33300854;uniprot:Q7Y2C2 ;genbank:GeneID:1482617 Length = 601 Score = 262 bits (669), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 166/539 (30%), Positives = 264/539 (48%), Gaps = 44/539 (8%) Query: 11 DFKLFL--QALWDQLDLPSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTL 68 D LFL + W QLD IAD++Q P + + A RG KS I +V+W + Sbjct: 26 DAMLFLGFKMTWMQLD----------IADFMQDSPNKAMVAAQRGEAKSTIACIYVVWCI 75 Query: 69 FNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDA-RWSRISFDV---LC 124 N + M++S S ++A+ + KLI+ L +LRP++ R S SFDV L Sbjct: 76 TQNPATRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALK 135 Query: 125 SPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKD 184 ++ S+ +GIT + G RAD++I DDIE N +T R KL + E SI T Sbjct: 136 GVEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT--- 192 Query: 185 DSRIMYLGTPQTTFTVYRKLAERNYRPFVWPARFPK--NITPYEGLIAPQLQEDI----D 238 +I+YLGTPQ+ ++Y L R + +WP RFP Y +AP + I + Sbjct: 193 HGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQARYGDWLAPSILARIARLEE 252 Query: 239 NGAQP----------GESTDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLK 288 G P G + DP R+++EDLL +E G F LQ+MLDTSL+D ++ LK Sbjct: 253 KGHNPRTGKGLDGTRGWAADPQRYNEEDLLDKELDQGPEGFQLQYMLDTSLADEQRMQLK 312 Query: 289 MADLVVTSVNPTEAPDNVIWCSDPRNVIK-DLPTVGLPGDYFYSPMQLQGEWTPYQETIC 347 + DL+ P+ V W +D R +K D + Y P + G W P Q+ Sbjct: 313 LRDLLFIDATHESVPEQVAWAADERFKLKFDAHRFPVIKPELYLPALMAGGWAPLQQMTM 372 Query: 348 SVDPSGRGSDETAACYLSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVET 407 VDP+G G DE + ++++ + ++ G+++ L + +Y V + VE Sbjct: 373 FVDPAGDGGDELSYALGGTLGPYIHVVSIGGWKGGFAEENLEKCIALAARYGVKVIYVEK 432 Query: 408 NFGDGIVSELFKKHLQQTK--------QNIFVDEVRANVRKEDRIIDALEPVLNQHRLVV 459 N G G V +LF+ H++ + I V++ + + +KE RIID L P++ +HRL+ Sbjct: 433 NLGAGAVGQLFRNHMRSIDPDTGKLRYEGIGVEDRQKSGQKERRIIDTLRPIMQRHRLIF 492 Query: 460 DRGVIDWDYSSNKDSSPESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSL 518 +D D+ S + + R +F+Q+ + + ++ DDR+D L V+ +L Sbjct: 493 HVSAMDSDHVSCQQYPADKRNERSVFHQIHNITTDRGSLPKDDRIDALEGLVRELAPTL 551 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 253 bits (645), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 169/542 (31%), Positives = 274/542 (50%), Gaps = 30/542 (5%) Query: 26 PSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTLFNNAEKKIMIISASKER 85 P R Q I ++ +G K ++A RG K+ I + ++ + + +I+I S + +R Sbjct: 48 PHLNRIQADILRFMFTGKKYRMVEAQRGQAKTTIAAIYAVFCIIHRPHFRILISSQTSKR 107 Query: 86 ADNMSIFLQKLIIETPWLKHLRP---KSDDA--RWSRISFDVLCSPHQAPSVKSVGITGQ 140 A+ ++ ++ K+ L+ + P D A R I + L +PSV I G Sbjct: 108 AEEIAGWVIKIFRGLDILEFMMPDIYSGDKASIRGFEIHY-TLRGSGASPSVACYSIEGS 166 Query: 141 MTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTV 200 M G+RADL+I DD+E NS T R KL + E ESI D I+YLGTPQ+ ++ Sbjct: 167 MQGARADLIIADDVESLQNSATAAGRVKLEEATKEFESINQTGD---ILYLGTPQSINSI 223 Query: 201 YRKLAERNYRPFVWPARFP--KNITPYEGLIAPQLQEDIDNGAQP------------GES 246 Y L R Y+ +WP R+P + Y +AP + ED++ A P G+ Sbjct: 224 YNNLPSRGYQLRIWPGRYPTVEQQVSYGDFLAPLIIEDME--ANPELRRGGGITRLQGQP 281 Query: 247 TDPDRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTSVNPTEAPDNV 306 T P+ ++DE L+++E S G + F LQFML+T LSD+E+FPLK++ ++ + + P+ Sbjct: 282 TCPEMYNDEALIEKEISQGTAKFQLQFMLNTRLSDSERFPLKLSSIMFGNFGVDKVPEMP 341 Query: 307 IWCSDPRNVIKDLPTVGLPG-DYFYSPMQLQGEWTPYQETICSVDPSGRG--SDETAACY 363 + +D N IK+ G D FY EW P I +DP+G G DET Sbjct: 342 LHSTDSINEIKEAQRPGNKSTDRFYRMAPRPYEWKPATRRIMYIDPAGGGQNGDETGVAI 401 Query: 364 LSQKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYNVSTLVVETNFGDGIVSELFKKHLQ 423 + ++Y+++ + GY D L I+ K+ N + VE NFG G + K + Sbjct: 402 VFLLGTYIYVYKCFGVKGGYEDADLEQIVMAAKEANCKEVFVEKNFGHGAFQAIIKPFFE 461 Query: 424 QTKQNIFVDEVRANVRKEDRIIDALEPVLNQHRLVVDRGVIDWDYSSNKDSSPESRLLYM 483 + + E A +KE+RIID LEP+L+ HRLV + +I D + + + E + Y Sbjct: 462 RL-HPCELQEDYATGQKEERIIDTLEPLLSAHRLVFNTEIIFEDNKAIQKYALEKQASYS 520 Query: 484 LFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTDSLSISAQAQIDLKKQEEWNDILEGFLD 543 LF+Q++ + R K +++HDDR+D L V+ T + A+ ++ E+ D + ++ Sbjct: 521 LFHQIANITRDKGSLRHDDRIDALYGAVRQLTTDIDYDEMAKQSREQMEQARDYI-AMMN 579 Query: 544 DP 545 DP Sbjct: 580 DP 581 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 175 bits (443), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 180/346 (52%), Gaps = 20/346 (5%) Query: 26 PSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTLFNNAEKKIMIISASKER 85 P R Q I +L G K I+A RG+ K+ ++ + ++ + + K+IM++S + +R Sbjct: 48 PHLIRMQADILKFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKR 107 Query: 86 ADNMSIFLQKLIIETPWLKHLRPKSDDA-RWSRISFDV---LCSPHQAPSVKSVGITGQM 141 A+ ++ ++ K+ +L+ + P R S +F++ L ++PSV I M Sbjct: 108 AEEIAGWVVKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGM 167 Query: 142 TGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTVY 201 G+RAD+++ DD+E N+ T R L +L E ESI D I+YLGTPQ ++Y Sbjct: 168 QGARADIILADDVESMQNARTAAGRALLEELTKEFESINQFGD---IIYLGTPQNVNSIY 224 Query: 202 RKLAERNYRPFVWPARFP--KNITPYEGLIAPQLQEDI-DNGA---------QPGESTDP 249 L R Y +W AR+P + Y +AP + +D+ DN A G P Sbjct: 225 NNLPARGYSVRIWTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAP 284 Query: 250 DRFDDEDLLQRESSMGRSNFMLQFMLDTSLSDAEKFPLKMADLVVTSVNPTEAPDNVIWC 309 + +DD+ L+++E S G + F LQFML+T + DA+++PL++ +L+ TS E P W Sbjct: 285 EMYDDDVLIEKEISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWS 344 Query: 310 SDPRNVIKDLPTVG-LPGDYFYSPMQLQGEWTPYQETICSVDPSGR 354 +D N+I D P G P D+ Y P+ EW I +DP+G+ Sbjct: 345 NDSINIIGDAPKYGNKPTDFMYRPVARPYEWGAVTRKIMYIDPAGK 390 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 42/188 (22%) Query: 44 KRLQIQAFRGVGKSWITGA-FVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPW 102 +R + A RG KS + +VLW ++ N + ++++ + +R I + E W Sbjct: 57 RRRLVLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLV-GTNLKRLSRAFIRELRQYFEDTW 115 Query: 103 LK----HLRPK---------------------------------SDDAR--WSRISFDVL 123 L+ ++RP +DD + WS + V+ Sbjct: 116 LQQNVWNVRPHIEGALVPALSASDRRKRNSQRNNVDYDEALATLTDDTKLIWSMEALQVI 175 Query: 124 C-SPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTP 182 + + P+V++V I +TG DL+ILDDI NS TE E +L+ + ES+L P Sbjct: 176 RPTVMKEPTVQTVSIGTTVTGDHYDLLILDDIVDFENSKTEDKAENILEWTRDLESVLDP 235 Query: 183 KDDSRIMY 190 + + Y Sbjct: 236 RQEHVYHY 243 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 65/134 (48%), Gaps = 10/134 (7%) Query: 56 KSWITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKH----LRPKSD 111 KS + + W + + E I+ ISA+ A+ ++ ++ + + ++ + P+ Sbjct: 82 KSHMVATWCAWIITRHPEVTILYISATATLAETQLYAVKNILASSVYNRYFPEYIHPQEG 141 Query: 112 D-ARWSR--ISFDVLCSPHQA---PSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELM 165 +WS +S D + + ++ + G+T TG AD+++ DD+ VP N+ TE Sbjct: 142 KREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGWHADIIVADDLVVPENAYTEDG 201 Query: 166 REKLLQLCTEAESI 179 RE + + ++ SI Sbjct: 202 RESVQKKSSQFTSI 215 >gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640322;genbank:gi:21234401;genbank:GeneID :956064 Length = 535 Score = 41.6 bits (96), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 14/142 (9%) Query: 52 RGVGKSWITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRP--- 108 R KS +V W +F N I + A++ A + ++ K I+ + L P Sbjct: 71 RDHQKSHCIAVWVCWQIFKNPAVTIAYVCATESLA-ILQLYDIKQILTSDEFTRLSPDMI 129 Query: 109 ---KSDDARWSRISFDVLCSPHQA------PSVKSVGITGQMTGSRADLMILDDIEVPGN 159 + +W+ + ++ P + P+V + G+ G+ ++M+ DD+ + N Sbjct: 130 EPMEKKRQKWAETAI-IVDHPIRKKERPRDPTVLATGLDSNNIGAHCNIMVKDDVVIDKN 188 Query: 160 SMTELMREKLLQLCTEAESILT 181 S+TE R+K+ SILT Sbjct: 189 SLTETARQKVEAKAGHLSSILT 210 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 50 AFRGVGKSWITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPK 109 A RG GK+W+T + KI+I S +K +A + + L E+P +LR + Sbjct: 84 ASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVIEKIDDLRKESP---NLRRE 140 Query: 110 SDDARWSRISFDVLCSPHQAPSVKSVGITGQMTGSRADLMILDDIEV 156 +D + S + D H +K V RA+L+I+D+ + Sbjct: 141 IEDLKTS--TNDAKVEFHNGSWIKIVASNDGARSKRANLLIVDEFRM 185 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 33.5 bits (75), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 20/156 (12%) Query: 56 KSWITGAFVLWTL-FNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLR-PKSDDA 113 K+ IT A+++ L + + + I ++ + K++ PWL +L P +A Sbjct: 97 KTTITLAYLIAGLEYKSGFRGIWAMNNQIQVGKKADTEFWKMVDRNPWLINLNAPPEKEA 156 Query: 114 RWSRISFDVLCSPHQAPSVKSVG-ITGQMTGSRADLMILDD-IEVPGNSMTELMREKLLQ 171 V S+ + G + G + G RA L+ILDD I+ G+ TE + + + Sbjct: 157 --------VKAKVFANGSILNAGWLGGGIEGDRAHLLILDDIIKEKGDGDTEDVLDWIEA 208 Query: 172 LCTEAESILTPKDDSRIMYLGT---PQTTFTVYRKL 204 +C + KD R + +GT P +T +R L Sbjct: 209 VC-----VPMVKDHGRTVVIGTRKRPDDIYTHFRTL 239 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 31.6 bits (70), Expect = 0.029, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 11/129 (8%) Query: 44 KRLQIQAFRGVGKSWITGAFVLWTLFN------NAEKKIMIISASKERADNMSIFLQKLI 97 KR ++ R +GK+ +LW F N + I+II+ +E+ D + L +LI Sbjct: 83 KRTVLRLGRRLGKTETMCIMILWHAFTQPNKGPNNQYDILIIAPYEEQVDLIFKRLSQLI 142 Query: 98 IETPWLKHLRPKSDDARWSRISFDVLCSPHQAPSVKSVGITGQMTGSRADLMILDDIEVP 157 + + P D + + + A S KS G RADL++LD+++ Sbjct: 143 DMSG---DVNPSRDIDKHIELPNGTVIHGITAGS-KSGSGAANTRGQRADLIVLDEMDYM 198 Query: 158 GNS-MTELM 165 G S +T +M Sbjct: 199 GESEITNIM 207 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 29.3 bits (64), Expect = 0.13, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 18/186 (9%) Query: 48 IQAFRGVGKS-WITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHL 106 I A RG KS ++ FV+W + + +II + E+A M ++ + P L Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 107 RPKSDDARWSRI-SFDVLCSPHQAPSVKSVGITGQMTG-----SRADLMILDDIEVPGNS 160 P+ A R+ + + + A V+ G +M G R DL+I DD+E N Sbjct: 149 FPQG--AGKGRVWQVGTIVTANDA-KVQVFGSGKRMRGLRHGPHRPDLVIGDDLENDENV 205 Query: 161 MTELMREKLLQLCTEAESILTPKDDSR-IMYLGTPQTTFTVYRKLAE------RNYRPFV 213 + R+KL + L DD+ ++ +GT +V +L + R ++ + Sbjct: 206 RSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAII 265 Query: 214 -WPARF 218 WP R Sbjct: 266 EWPHRM 271 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 28.9 bits (63), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 30/171 (17%) Query: 52 RGVGKSWITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETP-WLKHLRPKS 110 R GKS I A++LW + NA + I++ A M LQ P W++ Sbjct: 83 RQSGKSTIVTAYLLWYVLFNANVNVAILANKAPTAREMLGRLQLSYENLPKWMQQ----- 137 Query: 111 DDARWSRISFD------VLCSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTEL 164 W++ S + +L S A +V+ G +++ LD+ N + E Sbjct: 138 GILGWNKGSLELENGSKILASSTSASAVR---------GMSFNIIFLDEFAFVPNHIAE- 187 Query: 165 MREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTVYR--KLAERNYRPFV 213 Q ++ ++++ + TP Y+ AER +V Sbjct: 188 ------QFFASVYPTISSGKSTKVIIISTPHGMNQFYKLWHDAERGANNYV 232 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 28.5 bits (62), Expect = 0.20, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 18/186 (9%) Query: 48 IQAFRGVGKS-WITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETPWLKHL 106 I A RG KS ++ FV+W + + +II + E+A M ++ + P L Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 107 RPKSDDARWSRI-SFDVLCSPHQAPSVKSVGITGQMTG-----SRADLMILDDIEVPGNS 160 P+ A R+ + + + A V+ G +M G R DL++ DD+E N Sbjct: 149 FPQG--AGKGRVWQVGTIVTANDA-KVQVFGSGKRMRGLRHGPHRPDLVVGDDLENDENV 205 Query: 161 MTELMREKLLQLCTEAESILTPKDDSR-IMYLGTPQTTFTVYRKLAE------RNYRPFV 213 + R+KL + L DD+ ++ +GT +V +L + R ++ + Sbjct: 206 RSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRKFKAII 265 Query: 214 -WPARF 218 WP R Sbjct: 266 EWPHRM 271 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 28.5 bits (62), Expect = 0.23, Method: Compositional matrix adjust. Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 30/171 (17%) Query: 52 RGVGKSWITGAFVLWTLFNNAEKKIMIISASKERADNMSIFLQKLIIETP-WLKHLRPKS 110 R GKS I +++LW + NA + I++ A M LQ P WL+ Sbjct: 82 RQSGKSTIVTSYLLWYVLFNANVNVAILANKAATAREMLQRLQLSYENLPKWLQQ----- 136 Query: 111 DDARWSRISFD------VLCSPHQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTEL 164 +W+R S + +L + A +V+ G +++ LD+ N + + Sbjct: 137 GILQWNRGSLELENGSKILAASTSASAVR---------GMSFNVIFLDEFAFVPNHVAD- 186 Query: 165 MREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTVYRKL--AERNYRPFV 213 Q + ++ ++++ + TP Y+ AER ++ Sbjct: 187 ------QFFSSVYPTISSGKSTKVIIISTPHGMNMFYKLWHDAERKANEYI 231 >gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655470;genbank:gi:109289938;genbank:GeneI D:4157372 Length = 605 Score = 28.5 bits (62), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 343 QETICSVDPSGRGSDETAACYLS---QKNGFLYLHEVRAYRDGYSDNTLLDILKGCKKYN 399 +E DPS G D +A ++ G L E R ++ +I+ C KYN Sbjct: 423 KEVWVGYDPSYTG-DRSALVVIAPPKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYN 481 Query: 400 VSTLVVETNFGDGI-VSELFKK 420 V+ L ++T G G+ V E+ KK Sbjct: 482 VTRLAIDTT-GLGVGVYEIVKK 502 >gi|20547|lcl|protein:vir:105155 Length: 580 # NCBI annotation: conserved phage-related protein # Family: family:all:4926 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398598;genbank:gi:80159854;genbank:GeneID :3772993 Length = 580 Score = 28.1 bits (61), Expect = 0.31, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 12/73 (16%) Query: 19 LWDQLDLPSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTLFNNAEKKIMI 78 L+ +L L + R QY + + RG+GKSW++ F + + K I Sbjct: 68 LFQRLILRAMARNQYVM------------LICCRGLGKSWLSAVFFVASCILYKGLKCGI 115 Query: 79 ISASKERADNMSI 91 S ++A N+ I Sbjct: 116 ASGQGQQARNVII 128 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneI D:951204 Length = 462 Score = 27.7 bits (60), Expect = 0.35, Method: Compositional matrix adjust. Identities = 14/26 (53%), Positives = 15/26 (57%) Query: 55 GKSWITGAFVLWTLFNNAEKKIMIIS 80 GKS G FV W L N+ KKIM S Sbjct: 64 GKSLTLGKFVEWVLGNDHTKKIMTGS 89 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneI D:921033 Length = 462 Score = 27.7 bits (60), Expect = 0.36, Method: Compositional matrix adjust. Identities = 14/26 (53%), Positives = 15/26 (57%) Query: 55 GKSWITGAFVLWTLFNNAEKKIMIIS 80 GKS G FV W L N+ KKIM S Sbjct: 64 GKSLTLGKFVEWVLGNDHTKKIMTGS 89 >gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unknown # Family: family:all:144 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108709;genbank:gi:13487831;genbank:GeneI D:920905 Length = 402 Score = 27.7 bits (60), Expect = 0.39, Method: Compositional matrix adjust. Identities = 14/26 (53%), Positives = 15/26 (57%) Query: 55 GKSWITGAFVLWTLFNNAEKKIMIIS 80 GKS G FV W L N+ KKIM S Sbjct: 4 GKSLTLGKFVEWVLGNDHTKKIMTGS 29 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 26.9 bits (58), Expect = 0.59, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 145 RADLMILDDIEVPGNSMTELMREKLLQ--LCTEAESILTPKDDSRIMYLG 192 R DL++ DD++ +++E+ LL+ T + I + RI+YLG Sbjct: 205 RPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNRRIIYLG 254 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 26.9 bits (58), Expect = 0.61, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 134 SVGITGQMTGSRADLMILDD 153 + GI ++TG ADLMI+DD Sbjct: 207 AAGIGSRLTGMPADLMIIDD 226 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 26.9 bits (58), Expect = 0.61, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 134 SVGITGQMTGSRADLMILDD 153 + GI ++TG ADLMI+DD Sbjct: 207 AAGIGSRLTGMPADLMIIDD 226 >gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218809;genbank:gi:147917326;genbank:Ge neID:5142613 Length = 536 Score = 26.9 bits (58), Expect = 0.61, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Query: 145 RADLMILDDIEVPGNSMTELMREKLLQ--LCTEAESILTPKDDSRIMYLG 192 R DL++ DD++ +++E+ LL+ T + I + RI+YLG Sbjct: 205 RPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNRRIIYLG 254 >gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003892;genbank:gi:45686309;genbank:GeneID :2773034 Length = 527 Score = 26.6 bits (57), Expect = 0.93, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%) Query: 134 SVGITGQMTGSRADLM--------ILDDIEVPGNSMTELMREKLLQL 172 S G++TGSR M +LDDI+ P + +++ RE+ L Sbjct: 156 SAAAGGRITGSRGGYMTPGFSGMVMLDDIDKPDDMFSKVKRERTHML 202 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 26.6 bits (57), Expect = 0.96, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Query: 134 SVGITGQMTGSRADLMILDDIEVPGNSMTEL----MREKL-LQLCTEAESILTP 182 + G+ G +TG ADL I+DD P M+E R K+ L + T A + L P Sbjct: 191 ATGLGGTITGKPADLFIIDD---PYKHMSEADSATYRAKVDLWMATVATTRLAP 241 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 26.6 bits (57), Expect = 0.96, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Query: 134 SVGITGQMTGSRADLMILDDIEVPGNSMTEL----MREKL-LQLCTEAESILTP 182 + G+ G +TG ADL I+DD P M+E R K+ L + T A + L P Sbjct: 189 ATGLGGTITGKPADLFIIDD---PYKHMSEADSATYRAKVDLWMATVATTRLAP 239 >gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfWMP4_40 # Family: family:all:543 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762670;genbank:gi:115304378;genbank:GeneI D:5142298 Length = 581 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 33/76 (43%) Query: 385 DNTLLDILKGCKKYNVSTLVVETNFGDGIVSELFKKHLQQTKQNIFVDEVRANVRKEDRI 444 ++TL +I + +NV + VET + + KHL + K V + + K RI Sbjct: 439 EHTLDEIARLVVLWNVKRMYVETIAFQSLYRDRIIKHLAEKKIQCAVLDYKPVGNKHKRI 498 Query: 445 IDALEPVLNQHRLVVD 460 L NQ +V + Sbjct: 499 ESHLSSYFNQGNVVFN 514 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 134 SVGITGQMTGSRADLMILDD-IEVPGNSMTELMREKLLQ 171 S + G TG ADL+I+DD I+ + ++ +R+K+ Q Sbjct: 149 STSMLGGATGRGADLLIIDDPIKNREEAESKTIRDKIYQ 187 >gi|15217|lcl|protein:vir:2600 Length: 353 # NCBI annotation: gp4 # Family: family:all:543 # MgeID: mge:55 # MgeName: SIO1 # Cross-refs: genbank:acc:NP_064742;genbank:gi:9964611;genbank:GeneID: 1263055 Length = 353 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 27/108 (25%) Query: 412 GIVSELFKKHLQQTKQNIFVDEVRANVR---KEDRIIDALEPVLNQHRLVVDRGVIDWDY 468 IVSEL +++ + +DE R N KE+RI LEP + ++ + Y Sbjct: 247 AIVSELKDNYIKPNGLALKIDEHRPNRHQGSKEERIAAILEPRYDNLQM--------YHY 298 Query: 469 SSNKDSSPESRLLYMLFYQMSRMCRMKYAVKHDDRLDCLAQGVKYFTD 516 E L+ Y HDD DCLA FTD Sbjct: 299 RGGNCQVLEEELV-------------SYNPAHDDCKDCLAH---LFTD 330 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 133 KSVGITGQMTGSRADLMILDD 153 + VG+ G +TG D+ I+DD Sbjct: 174 RGVGVGGPLTGFSIDVGIIDD 194 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 133 KSVGITGQMTGSRADLMILDD 153 + VG+ G +TG D+ I+DD Sbjct: 174 RGVGVGGPLTGFSIDVGIIDD 194 >gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958123;genbank:gi:41057669;genbank:GeneID :2716813 Length = 507 Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 133 KSVGITGQMTGSRADLMILDD 153 + VG+ G +TG D+ I+DD Sbjct: 174 RGVGVGGPLTGFSIDVGIIDD 194 >gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705644;genbank:gi:23752329;genbank:GeneID :955741 Length = 507 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 133 KSVGITGQMTGSRADLMILDD 153 + VG+ G +TG D+ I+DD Sbjct: 174 RGVGVGGPLTGFSIDVGIIDD 194 >gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453630;genbank:gi:84662666;genbank:GeneID :5142566 Length = 483 Score = 24.3 bits (51), Expect = 4.3, Method: Compositional matrix adjust. Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 24/127 (18%) Query: 127 HQAPSVKSVGITGQMTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAE-----SILT 181 H +K+ G+ G +TG D+ + DD +T ++ L Q + ++ T Sbjct: 142 HPYGFIKAQGVGGSLTGFSIDVGLNDD-------LTADAQDALSQTVQDGHQDWYATVFT 194 Query: 182 PKDDSRI--MYLGTPQTTFTVYRKL-----AERNYRPFVWPA-RFPKNITP----YEGLI 229 + R + +GTP + + ++ + NYR +PA +P I EG + Sbjct: 195 TRLQQRSGQINMGTPWSANDIMARIKKVHEGKPNYRRLSYPALNYPGEIGYDPDLREGAL 254 Query: 230 APQLQED 236 P+L + Sbjct: 255 VPELHSE 261 >gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398965;genbank:gi:81343949;genbank:GeneID :3778868 Length = 523 Score = 23.9 bits (50), Expect = 6.0, Method: Compositional matrix adjust. Identities = 7/13 (53%), Positives = 10/13 (76%) Query: 499 KHDDRLDCLAQGV 511 KHDD++DCL + Sbjct: 490 KHDDQIDCLTMAI 502 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%) Query: 134 SVGITGQMTGSRADLMILDDIEVPGNSMTEL----MREKLLQ-LCTEAESILTPK 183 + G+ +TG ADL I+DD P +M E REK+ + + A + L+P+ Sbjct: 177 AAGLGSAITGKSADLFIIDD---PFKNMIEADSTRHREKVNEWFASVASTRLSPE 228 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.135 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,961 Number of Sequences: 514 Number of extensions: 12222 Number of successful extensions: 158 Number of sequences better than 100.0: 51 Number of HSP's better than 100.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 59 length of query: 577 length of database: 206,069 effective HSP length: 77 effective length of query: 500 effective length of database: 166,491 effective search space: 83245500 effective search space used: 83245500 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)