Query lcl|NC_016571.1_cdsid_YP_004958151.1 [gene=OBP_244] [protein=putative ATP-dependent Clp protease subunit] [protein_id=YP_004958151.1] [location=223920..224576] Match_columns 218 No_of_seqs 196 out of 2301 Neff 8.3 Searched_HMMs 1612 Date Thu Nov 7 15:56:30 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_244 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_244_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:79548 Length: 652 100.0 1.8E-46 1.1E-49 271.3 20.5 211 4-218 1-227 (652) 2 protein:vir:95512 Length: 693 100.0 1.3E-45 8.1E-49 266.6 19.2 210 1-218 30-252 (693) 3 protein:vir:79544 Length: 70 # 0.9 70 0.044 10.4 2.1 64 145-216 1-70 (70) 4 protein:vir:9931 Length: 119 # 0.9 50 0.031 11.2 0.1 62 1-68 44-119 (119) 5 protein:vir:4953 Length: 397 # 0.9 74 0.046 10.3 3.8 90 115-218 1-102 (397) 6 protein:vir:3870 Length: 400 # 0.7 91 0.056 9.8 2.7 94 116-218 1-102 (400) 7 protein:vir:81070 Length: 390 0.6 1.1E+02 0.068 9.3 2.4 84 118-218 1-86 (390) 8 protein:vir:94418 Length: 131 0.6 97 0.06 9.6 0.3 48 168-218 1-51 (131) 9 protein:vir:93902 Length: 131 0.5 1.1E+02 0.065 9.4 0.3 48 168-218 1-51 (131) 10 protein:vir:10364 Length: 390 0.5 1.2E+02 0.074 9.1 2.1 84 118-218 1-86 (390) No 1 >protein:vir:79548 Length: 652 # NCBI annotation: putative protease/scaffold protein # Family: family:all:62 # ACLAME annotation(s): go:0008236 - serine-type peptidase activity; phi:0000017 - phage prohead/capsid assembly # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272518;genbank:gi:148609387;genbank:GeneID:5204384 Probab=100.00 E-value=1.8e-46 Score=271.33 Aligned_cols=211 Identities=15% Similarity=0.187 Sum_probs=149.3 Q ss_pred hHhhHhhcCceEEEEeecccccchHHHHHHHHHHHhcCCCCcEEEEEecCCCcHHHHHHHHHHHHccCCceEEEEecchh Q lcl|NC_016571. 4 VKEVVEKKEPIIAEISINKSFNHDDIVTLTETIRKGVDSFDTLIFYMNSMGGQINTGLVFRDIVNSWDKKIVYISELLNA 83 (218) Q Consensus 4 v~~vv~~~~~i~~~i~i~g~i~~~~~~~~~~~~~~~~~~~~~I~l~InSpGG~v~a~~~I~~~i~~~~~~v~~~~~g~aa 83 (218) ++.--+....|+.+..|. .| .-+...++. -+++.+..+.|.|+||||||+|++|++|||+|+.++.+|+|+|.|+|| T Consensus 1 ~~a~~~~~aei~iy~~Ig-~w-~vta~~~~~-~L~~l~~~~~I~i~INSpGG~V~~G~aIyn~lk~~~~~v~~~i~G~AA 77 (652) T protein:vir:79 1 MQAGHQSDADIYIYDEIG-FW-GVTAKQFIS-DLNALGDITHINLHINSPGGDVFEGIAIFNALKTHGASITVYVDGVAA 77 (652) T ss_pred CCCCCCCCceEEEEeecc-cc-cCCHHHHHH-HHHhcCCCceEEEEEeCCCCChhHHHHHHHHHhhcCCCeEEEEeehhh Confidence 444344444555555553 11 122222333 345556678899999999999999999999999999999999999999 Q ss_pred hhHHHHhhcCCceEEecccceeeecccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCceeCHH Q lcl|NC_016571. 84 SLATALPQCGDVLRLAYPTSRFMLHDSTYTYKGTRADVANQMEYTSHADDVWDNAYMEGIGLTKKEYAKLVAFDNVMYAN 163 (218) Q Consensus 84 S~a~~I~~a~~~~~~a~~~s~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~e~i~~~~~~~~~~ta~ 163 (218) |+|++|+++|++ +.+++++++|+|+|+++..|++.|++.+++.++++.+.+.++|++++|++.++|.++|++++||||+ T Consensus 78 S~ASvIa~ag~~-~~m~~~a~lMIH~p~~~~~G~a~dl~~~a~~L~~~~~~i~~~Ya~ktG~~~e~i~~~m~~etwlta~ 156 (652) T protein:vir:79 78 SMASVIAMVGNP-VIMPENTFMMIHKPFGFTGGDAEDMRTYADLLDKVEAVLLPAYAQKTGKTTDEIAAMLADETWMSGA 156 (652) T ss_pred hHHHHHHhcCCe-EEcCCCceEEEEccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhhhcCCCHH Confidence 999999999996 5678999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHhcCCccccchhhHHHHHHH----HHHHHHhhcccc-c----cccccCcccCCC---CccccCC----C Q lcl|NC_016571. 164 KFMMLGTKGGIDGMILKRLNVA----QYVCNTRTGIKM-I----DVRYHTRNDVPN---LPLYKEG----E 218 (218) Q Consensus 164 eA~e~GLiD~I~~~~~~~~~~~----~~i~~~~~~~~~-~----~~~~~~~~~~~~---~~~~~~~----~ 218 (218) ||+++||+|+|.+-......+. +...+....++. + +..-..+++.|. .|.-... + T Consensus 157 EA~e~Gf~D~i~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~v~d~EPa~~~~pvqAaAP~~De 227 (652) T protein:vir:79 157 ECLAQGFADQVTPAVKAMACIQSKRTEEFKKMPDSIRNMITPPRNSAPRVQDDEPAASRTPVQAAAPVVDE 227 (652) T ss_pred HHHhcCCcccccchhhhhhhhhhhhhhhhhhhHHHHHHHhcccccccccccccccccccccccccCCcCch Confidence 9999999999954322111110 001111111111 0 000011111111 0000000 0 No 2 >protein:vir:95512 Length: 693 # NCBI annotation: Putative Clp protease # Family: family:all:62 # ACLAME annotation(s): go:0008236 - serine-type peptidase activity; phi:0000017 - phage prohead/capsid assembly # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293349;genbank:gi:148912770;genbank:GeneID:5228164 Probab=100.00 E-value=1.3e-45 Score=266.64 Aligned_cols=210 Identities=14% Similarity=0.162 Sum_probs=151.1 Q ss_pred CchhHhhHhhcCceEEEEeecccccch-HHHHHHHHHHHhcCCCCcEEEEEecCCCcHHHHHHHHHHHHccCCceEEEEe Q lcl|NC_016571. 1 MSEVKEVVEKKEPIIAEISINKSFNHD-DIVTLTETIRKGVDSFDTLIFYMNSMGGQINTGLVFRDIVNSWDKKIVYISE 79 (218) Q Consensus 1 ~s~v~~vv~~~~~i~~~i~i~g~i~~~-~~~~~~~~~~~~~~~~~~I~l~InSpGG~v~a~~~I~~~i~~~~~~v~~~~~ 79 (218) --+++..-+ -+..|.|+|.|+.. .....+.+.+++.+..+.|.|+||||||+|++|++|||+|+.++.+|+|++. T Consensus 30 w~~i~~~~~----~~~ei~iy~~Ig~wgita~~f~~~L~~~~d~~~I~v~INSpGGdV~~G~aIyn~Lk~~~~~Vtv~vd 105 (693) T protein:vir:95 30 WYSIKAAGR----GVAEVLLYDEIGVWGITALQFARDLKAMGDLTKINLHIHSPGGDVFEGTAIYNLLRNHPASVDVYID 105 (693) T ss_pred ceeeeecCC----CeeEEEEeecccccccCHHHHHHHHHhcCCCceeEEEEECCCCchhhHHHHHHHHhhcCCCeEEEEe Confidence 112333222 23455555555432 2222333334555567889999999999999999999999999999999999 Q ss_pred cchhhhHHHHhhcCCceEEecccceeeecccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCce Q lcl|NC_016571. 80 LLNASLATALPQCGDVLRLAYPTSRFMLHDSTYTYKGTRADVANQMEYTSHADDVWDNAYMEGIGLTKKEYAKLVAFDNV 159 (218) Q Consensus 80 g~aaS~a~~I~~a~~~~~~a~~~s~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~e~i~~~~~~~~~ 159 (218) |+|||+|++|+|+||+ +++++++++|+|+|++...|++.|+++.++.++++.+.+.++|++++|++.++|.++|++++| T Consensus 106 GlAASaASvIamagd~-i~m~~~a~~MIH~p~~~~~Gna~dl~~~a~~L~~~~~~i~~~Y~~ktG~~~e~i~~~m~~etw 184 (693) T protein:vir:95 106 GLAASMASVIAMAGDT-IYMPENAMMMVHKPWGIQGGDADDMRRYAELLDKVEDTLVMAYANKTGKSADDIKALLKEETW 184 (693) T ss_pred ehhhhHHHHHHhcCCe-EEecCCCeEEEEccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhhhcC Confidence 9999999999999996 567899999999999999999999999999999999999999999999999999999999999 Q ss_pred eCHHHHHhcCCccccchhhHHHHHHHHH----HHHHhhccccccccccCcccCCCCcc--------ccCCC Q lcl|NC_016571. 160 MYANKFMMLGTKGGIDGMILKRLNVAQY----VCNTRTGIKMIDVRYHTRNDVPNLPL--------YKEGE 218 (218) Q Consensus 160 ~ta~eA~e~GLiD~I~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 218 (218) |||+||+++||+|+|.+-......+... ..+....++..- ..+...|..|. -.+-+ T Consensus 185 lta~EAve~Gf~Dei~e~~~~~a~~~~~~~~~~~~~p~~l~~~~---~~~~~~p~~~~~~PaPTPaaaaPa 252 (693) T protein:vir:95 185 MNGREAVAAGFADQLTEPLQAAAHLSSKRMQEFAHMPEALKTLL---APRAQTPAAPANTPAPTPASAAPA 252 (693) T ss_pred CCHHHHHhccchhhhhhhhHHHHhhHHHHHHHhhchHHHHHHHH---hhhcccccccccCcccCccCCCCC Confidence 9999999999999996533322222111 111121111111 11111111111 00001 No 3 >protein:vir:79544 Length: 70 # NCBI annotation: hypothetical protein # Family: family:all:1547 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272516;genbank:gi:148609385;genbank:GeneID:5204380 Probab=0.91 E-value=70 Score=10.40 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=26.2 Q ss_pred CCHHHHHHHHhCCceeCHHHHHhcCCccccchhhHHHHHHHH------HHHHHhhccccccccccCcccCCCCccccC Q lcl|NC_016571. 145 LTKKEYAKLVAFDNVMYANKFMMLGTKGGIDGMILKRLNVAQ------YVCNTRTGIKMIDVRYHTRNDVPNLPLYKE 216 (218) Q Consensus 145 ~~~e~i~~~~~~~~~~ta~eA~e~GLiD~I~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (218) ++.+++.++++ .|+-|+.|+-.|=-=.|++-....+++.+ +..+.-..+. ..+.-.|.-++.+= T Consensus 1 mt~e~~~~ml~--~yleAE~avl~GkS~ti~gr~lTre~LseIRkgr~~We~rl~~~~------~~r~g~~~~kvarF 70 (70) T protein:vir:79 1 MNQNDIEAMIQ--RYTEAEMAVLDGKSVTFNGQQMTMENLSEIRQGRQEWERRLAALI------TRRRGHPGYRLARF 70 (70) T ss_pred CCHHHHHHHHH--HHHHHHHHHHcCCceeeCCeeecccCHHHHHHHHHHHHHHHHHHh------cccCCCCCcccccC Confidence 88888888776 58888888888743334332222222211 1111110000 00000110001000 No 4 >protein:vir:9931 Length: 119 # NCBI annotation: hypothetical protein # Family: family:all:2393 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795693;genbank:gi:28876455;genbank:GeneID:1258023 Probab=0.86 E-value=50 Score=11.24 Aligned_cols=62 Identities=11% Similarity=0.217 Sum_probs=12.9 Q ss_pred CchhHhhHhhcCc----eEEEEee----c-----ccccchHHHHHHHHHHHhcCCCCcEEEEEecCCCcHHH-HHHHHHH Q lcl|NC_016571. 1 MSEVKEVVEKKEP----IIAEISI----N-----KSFNHDDIVTLTETIRKGVDSFDTLIFYMNSMGGQINT-GLVFRDI 66 (218) Q Consensus 1 ~s~v~~vv~~~~~----i~~~i~i----~-----g~i~~~~~~~~~~~~~~~~~~~~~I~l~InSpGG~v~a-~~~I~~~ 66 (218) |+.-.. ..+.+. ..+.|+. + .+|-+.....+ ....+++.=+|-=||-|-.|+. .+.|-+. T Consensus 44 ~~Ddsk-tA~~Ga~ivdt~lqIDlFyp~~sR~d~eeiks~~~~~l-----~r~~~it~qil~DnSIGReVYhV~f~isd~ 117 (119) T protein:vir:99 44 ISDLSK-TAQTGAVIDDFSLNIDAFLPGDSRLDAEEIKSRMLRLL-----GRNNQIKAQILVDNSIGREVYRVAINITET 117 (119) T ss_pred cCcccc-ccccceEEEeeeEEEEEeecCcccccHHHHHHHHHHHh-----hhhhhhhhcccccccccceeeeeeeEeeee Confidence 222111 111111 1122221 0 12222211111 0001122222333454444422 0111111 Q ss_pred HH Q lcl|NC_016571. 67 VN 68 (218) Q Consensus 67 i~ 68 (218) |- T Consensus 118 i~ 119 (119) T protein:vir:99 118 LF 119 (119) T ss_pred cC Confidence 10 No 5 >protein:vir:4953 Length: 397 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049929;genbank:gi:9632900;genbank:GeneID:1262076 Probab=0.85 E-value=74 Score=10.27 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=12.8 Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCceeCHHHHHhcCCccccchhhHHHHHHHHHHHHHhhc Q lcl|NC_016571. 115 KGTRADVANQMEYTSHADDVWDNAYMEGIGLTKKEYAKLVAFDNVMYANKFMMLGTKGGIDGMILKRLNVAQYVCNTRTG 194 (218) Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~e~i~~~~~~~~~~ta~eA~e~GLiD~I~~~~~~~~~~~~~i~~~~~~ 194 (218) -....+++.... .+.+.+.+. .++++..... .-.+.+|..+ +.++|+......+...+.+...... T Consensus 1 Mk~~~el~~~~~---~~~~~~~~l--------~~~~~~~~~~-~~~~~ee~~~--~~~~i~~~~~~~e~~~~~~~~~~~~ 66 (397) T protein:vir:49 1 MKTSNELHDLWV---AQGDKVENL--------NEKLNVAMLD-DSVSAEELQA--IKNERDTAKMKRDMFKEQYTEARAN 66 (397) T ss_pred CchHHHHHHHHH---HHHHHHHHH--------HHHHHHHHhh-hhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH Confidence 001111111111 111111110 0112211111 1112222221 1222222211111111111110000 Q ss_pred -cccccccccCcccCCC-----------CccccCCC Q lcl|NC_016571. 195 -IKMIDVRYHTRNDVPN-----------LPLYKEGE 218 (218) Q Consensus 195 -~~~~~~~~~~~~~~~~-----------~~~~~~~~ 218 (218) ................ ...++.++ T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (397) T protein:vir:49 67 EVANMSEEEKKPLTKSEEEVKAGFVKDFKNLVRGRY 102 (397) T ss_pred hhhccccccccccccchhHHHHHHHHHHHHHHhcch Confidence 0000000000000000 00011111 No 6 >protein:vir:3870 Length: 400 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680487;swissprot:trembl:q8ltc0;genbank:gi:22296527;interpro:IPR006444;uniprot:Q8LTC0;genbank:GeneID:951713 Probab=0.69 E-value=91 Score=9.77 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=14.1 Q ss_pred cCHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCceeCHHHHHhcCCccccchhhHHHHHHHHHHHHHhhc Q lcl|NC_016571. 116 GTRA-DVANQMEYTSHADDVWDNAYMEGIGLTKKEYAKLVAFDNVMYANKFMMLGTKGGIDGMILKRLNVAQYVCNTRTG 194 (218) Q Consensus 116 ~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~e~i~~~~~~~~~~ta~eA~e~GLiD~I~~~~~~~~~~~~~i~~~~~~ 194 (218) .+.. .+......+..+.+.+.... +++++++....- ...++.-..+-.++..+.....++.+.+...... T Consensus 1 ~~l~e~i~e~~~~l~el~~~~~~~~--------~e~r~~~e~~~~-~~~~~~~~e~~~~~~~l~~ei~~l~e~~~~~~~~ 71 (400) T protein:vir:38 1 MTLDEKLAAVKKQLDEKRSALPAMK--------TELRSLLEGEDS-EENLKKAEGVRAKYDKAGKEIKDLEEKRDLYEAA 71 (400) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2221 12222222222222222222 233333221110 0000000001111111111111111111100000 Q ss_pred cccccccccCcccCCCCccccCC-------C Q lcl|NC_016571. 195 IKMIDVRYHTRNDVPNLPLYKEG-------E 218 (218) Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~-------~ 218 (218) .+.....-......+...-.++. + T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (400) T protein:vir:38 72 LKGNEQSSGKKPDHPEEHSYRDALNAYLHTR 102 (400) T ss_pred HHHHhhcccccccchhhhhHHHHHHHHHhhH Confidence 00000000000000000000000 0 No 7 >protein:vir:81070 Length: 390 # NCBI annotation: p09 # Family: family:all:585 # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285679;genbank:gi:148727187;genbank:GeneID:5247115 Probab=0.56 E-value=1.1e+02 Score=9.33 Aligned_cols=84 Identities=11% Similarity=-0.003 Sum_probs=10.9 Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCceeCHHHHHhc-CCccccchhhHHHHHHHHHHHHHhhcc Q lcl|NC_016571. 118 RADVAN-QMEYTSHADDVWDNAYMEGIGLTKKEYAKLVAFDNVMYANKFMML-GTKGGIDGMILKRLNVAQYVCNTRTGI 195 (218) Q Consensus 118 ~~~~~~-~~~~~~~~~~~~~~~~a~~~g~~~e~i~~~~~~~~~~ta~eA~e~-GLiD~I~~~~~~~~~~~~~i~~~~~~~ 195 (218) -+++.. ..+.+....+.+... ++.. ..+.-++.++-.++ .|-.++.++.....+..+......... T Consensus 1 m~~l~~~l~~~~~~~~~~~~~~-----------~e~~-~~~~~~~~e~~~~~~~l~~e~~~l~~~i~~~e~~~~~~~~~~ 68 (390) T protein:vir:81 1 MTDITSKLEATLANVTDSLRAF-----------GERA-VRDGELNASARSKVDELFATVGNLSAEVQAARQRVAELEGNG 68 (390) T ss_pred ChHHHHHHHHHHHHHHHHHHHH-----------HHHH-HhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 111111 111111111111111 1110 11111222221110 011111111111111111111100000 Q ss_pred ccccccccCcccCCCCccccCCC Q lcl|NC_016571. 196 KMIDVRYHTRNDVPNLPLYKEGE 218 (218) Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~ 218 (218) ......-.. +.. -..+.+ T Consensus 69 ~~~~~~~~~----~~~-~~~~~~ 86 (390) T protein:vir:81 69 AGGDVQHVS----VGD-MFVASE 86 (390) T ss_pred ccccccccc----chh-hhhhhH Confidence 000000000 000 000000 No 8 >protein:vir:94418 Length: 131 # NCBI annotation: ORF029 # Family: family:all:508 # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240011;genbank:gi:66395684;genbank:GeneID:5133078 Probab=0.56 E-value=97 Score=9.63 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=14.7 Q ss_pred cCCccccchhhHHHHHHHHHHHHHhhccccccccccCcccCCCCccccC---CC Q lcl|NC_016571. 168 LGTKGGIDGMILKRLNVAQYVCNTRTGIKMIDVRYHTRNDVPNLPLYKE---GE 218 (218) Q Consensus 168 ~GLiD~I~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 218 (218) .-+.-+|.+++...+.+.+.+.. .++.++.+.....+.|-+-+.+= .+ T Consensus 1 ~dil~~iy~~L~~d~~L~~lv~~---rI~~y~~Pe~~d~~~p~I~i~~i~~~p~ 51 (131) T protein:vir:94 1 MNILNTIKGILLSDAELKTHINS---RIYYYKVTENAETSKPFVVITPIYDLPS 51 (131) T ss_pred CchHHHHHHHhhcchHHHhhcCC---ceEEEecCCccccccceEEEeeCCCCcc Confidence 22222333334444444443331 23444333322222222211111 11 No 9 >protein:vir:93902 Length: 131 # NCBI annotation: ORF029 # Family: family:all:508 # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239943;genbank:gi:66395617;genbank:GeneID:5130968 Probab=0.53 E-value=1.1e+02 Score=9.41 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=14.6 Q ss_pred cCCccccchhhHHHHHHHHHHHHHhhccccccccccCcccCCCCccccC---CC Q lcl|NC_016571. 168 LGTKGGIDGMILKRLNVAQYVCNTRTGIKMIDVRYHTRNDVPNLPLYKE---GE 218 (218) Q Consensus 168 ~GLiD~I~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 218 (218) .-+.-+|..++...+.+.+.+.. .++.++.+.....+.|-+-+.+= .+ T Consensus 1 ~dil~~iy~~L~~d~~L~~lv~~---rI~~y~~Pe~~d~~~p~I~i~~i~~~p~ 51 (131) T protein:vir:93 1 MNILNTIKEILLSDAELQTYINS---RIYYYKVTENAETSKPFVVITPIYDLPS 51 (131) T ss_pred CchHHHHHHHhhcchHHHhhcCC---ceEEEecCCccccccceEEEeeCCCCcc Confidence 22222333334444444443331 23444333322222222211111 11 No 10 >protein:vir:10364 Length: 390 # NCBI annotation: head protein; major capsid subunit precursor # Family: family:all:585 # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858956;genbank:gi:32128421;genbank:GeneID:2648357 Probab=0.51 E-value=1.2e+02 Score=9.12 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=10.7 Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhCCceeCHHHHHhc-CCccccchhhHHHHHHHHHHHHHhhcc Q lcl|NC_016571. 118 RADVAN-QMEYTSHADDVWDNAYMEGIGLTKKEYAKLVAFDNVMYANKFMML-GTKGGIDGMILKRLNVAQYVCNTRTGI 195 (218) Q Consensus 118 ~~~~~~-~~~~~~~~~~~~~~~~a~~~g~~~e~i~~~~~~~~~~ta~eA~e~-GLiD~I~~~~~~~~~~~~~i~~~~~~~ 195 (218) -+++.. ..+.+....+.+.....+. .. +.-++.++-.++ .+-.++.++....++..+......... T Consensus 1 m~e~~~~l~~~~~~~~~~~~~~~e~~-----------~~-~~~~~~e~~~~~~~~~~e~~~l~~~i~~~~~~~~~~~~~~ 68 (390) T protein:vir:10 1 MTDITSKLEATLANVTDSLRAFGERA-----------VR-DGELNASARSKVDELFATVGNLSAEVQAARQRVAELEGNG 68 (390) T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH-----------Hh-hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 111111 1111222222221111110 00 111222221110 011111111111111111111100000 Q ss_pred ccccccccCcccCCCCccccCCC Q lcl|NC_016571. 196 KMIDVRYHTRNDVPNLPLYKEGE 218 (218) Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~ 218 (218) ...+... ...-....+.+ T Consensus 69 ~~~~~~~-----~~~~~~~~~~~ 86 (390) T protein:vir:10 69 AGGDVQH-----VSVGDLFVASE 86 (390) T ss_pred ccccccc-----cchhhhhhhhH Confidence 0000000 00000000111 Done!