Virfam_CNT_anal:NC_015937

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : TMA | Genbank acc : NC_015937

Category to which the Query Phage was assigned :

The queried phage was recognized as a Myoviridae
but could not be further assigned to any of the 4 canonical Types characterized in Lopes et al (2014)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 168

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	72	lcl\|NC_015937.1_cdsid_YP_004782279.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_015937.1_cdsid_YP_004782210.1	HHsearch (proba=100.00%)
TermL	61	lcl\|NC_015937.1_cdsid_YP_004782268.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	68	lcl\|NC_015937.1_cdsid_YP_004782275.1	HHsearch (proba=100.00%)
Ad1	143	lcl\|NC_015937.1_cdsid_YP_004782350.1	HHsearch (proba=78.76%)
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matched obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102823 protein:vir:80835 protein:vir:96666	YS40 phiEF24C Twort	98 % 20 % 20 %
Portal	protein:vir:102727 protein:vir:96579 protein:vir:80796	YS40 Twort phiEF24C	99 % 20 % 19 %
TermL	protein:vir:102747 protein:vir:98727 protein:vir:7745	YS40 Ma-LMM01 Bxz1	97 % 21 % 18 %
Sheath	protein:vir:102819 protein:vir:96586 protein:vir:99306	YS40 Twort K	92 % 21 % 20 %
Ad1	protein:vir:8104	Che9c	18 %