Query lcl|NC_015465.1_cdsid_YP_004421730.1 [gene=S-CBS3_gp08] [protein=hypothetical protein] [protein_id=YP_004421730.1] [location=9390..9815] Match_columns 141 No_of_seqs 4 out of 7 Neff 1.6 Searched_HMMs 1612 Date Thu Nov 7 12:47:05 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_8 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_8_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:3426 Length: 117 # 97.2 1.6E-06 9.7E-10 52.4 5.3 102 1-104 1-117 (117) 2 protein:vir:395 Length: 117 # 97.0 2.7E-06 1.6E-09 51.2 4.8 102 1-104 1-117 (117) 3 protein:vir:79639 Length: 123 3.6 19 0.012 13.6 3.9 97 1-115 7-123 (123) 4 protein:vir:97237 Length: 122 2.9 23 0.014 13.1 5.6 94 1-94 1-122 (122) 5 protein:vir:107669 Length: 123 2.4 28 0.017 12.7 3.3 97 1-115 7-123 (123) 6 protein:vir:80382 Length: 122 1.4 47 0.029 11.4 4.9 89 1-94 1-122 (122) 7 protein:vir:104346 Length: 123 1.2 55 0.034 11.0 5.8 94 1-99 14-123 (123) 8 protein:vir:1582 Length: 117 # 1.0 67 0.042 10.5 2.3 83 1-93 1-117 (117) 9 protein:vir:100632 Length: 381 0.9 51 0.031 11.2 0.5 46 1-107 335-381 (381) 10 protein:vir:9509 Length: 381 # 0.8 59 0.037 10.8 0.5 43 1-75 335-381 (381) No 1 >protein:vir:3426 Length: 117 # NCBI annotation: head-tail joining protein # Family: family:all:1908 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040589;genbank:gi:9626253;genbank:GeneID:2703484 Probab=97.17 E-value=1.6e-06 Score=52.40 Aligned_cols=102 Identities=27% Similarity=0.303 Sum_probs=78.5 Q ss_pred Ccccccc-eeeecc------ccceeeEeecccc-----ceeeeeCch--hhhcC-CeeeecceeEEEeccchhhhhhcCc Q lcl|NC_015465. 1 MAFTEDL-DLFLDT------AEMAVPVTAGSVS-----GNGVLDMPS--ETIAG-GMVVSTDYSLICRADQFGDLMHGAG 65 (141) Q Consensus 1 MA~TeDl-~~FLdt------aefav~~taGS~s-----~~gILD~Ps--evIAg-gmvlStdY~L~~kas~fg~l~~gts 65 (141) |+=-+.| +.+|.. ..|+++|+.=|.. -+||+|-|- ..++| +-+=++.=.|.||++++-.|.+++. T Consensus 1 m~~~dNlfd~a~~~aD~~i~~~fg~~a~i~~~~g~~~~i~gVFDdP~~~~~~~gG~~i~~s~P~L~vk~aDv~~l~r~D~ 80 (117) T protein:vir:34 1 MADFDNLFDAAIARADETIRGYMGTSATITSGEQSGAVIRGVFDDPENISYAGQGVRVEGSSPSLFVRTDEVRQLRRGDT 80 (117) T ss_pred CCcccchhHHHHhhcchhhHhhcCeeEEEEeCCCcceEEEEEecCccchhhccCCEEeecCCcEEEeeechhhccCCCCE Confidence 6655555 234444 4799988764443 289999994 22344 5566788899999999999999999 Q ss_pred ceeccccccccCCCccccccceeeeeeeeccCcccCCcc Q lcl|NC_015465. 66 INVDGYPYTLIGPPMLLDDGAFCSLTLQRTVTPEQNTSD 104 (141) Q Consensus 66 ItVd~~~YT~Vr~~~lIDDG~f~eL~L~Kt~~~~~~~~~ 104 (141) ++|+|+.|-++| +.+ ||+=.|-|.|-+-..|.+|... T Consensus 81 v~I~G~~y~V~~-~~P-D~~G~~~l~L~rg~pp~~~~~~ 117 (117) T protein:vir:34 81 LTIGEENFWVDR-VSP-DDGGSCHLWLGRGVPPAVNRRR 117 (117) T ss_pred EEECCCeeEeee-ccc-CCCceEEEEeecCCCCccccCC Confidence 999999999665 444 7888899999999999888776 No 2 >protein:vir:395 Length: 117 # NCBI annotation: gp10 # Family: family:all:1908 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046905;genbank:gi:9630475;genbank:GeneID:1261649 Probab=96.96 E-value=2.7e-06 Score=51.15 Aligned_cols=102 Identities=21% Similarity=0.233 Sum_probs=74.9 Q ss_pred Ccccccce-eeecc------ccceeeEee--ccc---cceeeeeCc---hhhhcCCeeeecceeEEEeccchhhhhhcCc Q lcl|NC_015465. 1 MAFTEDLD-LFLDT------AEMAVPVTA--GSV---SGNGVLDMP---SETIAGGMVVSTDYSLICRADQFGDLMHGAG 65 (141) Q Consensus 1 MA~TeDl~-~FLdt------aefav~~ta--GS~---s~~gILD~P---sevIAggmvlStdY~L~~kas~fg~l~~gts 65 (141) |+=-+.|| ..+.. .+|+++++. |+. +-+||+|-| +-...||-+=.+-=.|.||++++--|.+++. T Consensus 1 m~~~dNlFd~ama~aD~aI~~~~g~~a~i~~g~~~~rti~gVFDdP~~~~~~aggg~ie~saP~LfvktaDv~gl~r~D~ 80 (117) T protein:vir:39 1 MADFDNLFDEAMSRADGAIRGVMGTEAKVMSGTLSGATLVGVFDDPENIGYAGAGIRVEGTSPTLFVKTSTVSQLQRMDT 80 (117) T ss_pred CCcccchHHHHHHhhhHHHHHhcCceEEEEeCCCCceEEEEEecCccccccccCceEEeccCcEEEEeeccccccCCCCE Confidence 66445542 23333 468887765 442 338999999 3344444444556789999999999999999 Q ss_pred ceeccccccccCCCccccccceeeeeeeeccCcccCCcc Q lcl|NC_015465. 66 INVDGYPYTLIGPPMLLDDGAFCSLTLQRTVTPEQNTSD 104 (141) Q Consensus 66 ItVd~~~YT~Vr~~~lIDDG~f~eL~L~Kt~~~~~~~~~ 104 (141) ++|+|+.|-++| +.+ ||+=.|-|.|-+-..|.+|.-. T Consensus 81 vtI~g~~y~V~~-~~p-Dg~G~~~l~L~rg~pp~~~~~~ 117 (117) T protein:vir:39 81 LTINGRQFWVDR-VGP-DDCGSCHIWLGNGTPPASSRRR 117 (117) T ss_pred EEECCCceEEee-ecc-CCCceEEEEeecCCCCCccCCC Confidence 999999999666 444 8888999999998888877666 No 3 >protein:vir:79639 Length: 123 # NCBI annotation: gp39 # Family: family:all:704 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285528;genbank:gi:148734511;genbank:GeneID:5219997 Probab=3.56 E-value=19 Score=13.56 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=56.1 Q ss_pred Ccccccceeeecc--ccceeeEeecccc---------------ceeeeeCchh-hhcCCeeeecceeEEEeccchhhhhh Q lcl|NC_015465. 1 MAFTEDLDLFLDT--AEMAVPVTAGSVS---------------GNGVLDMPSE-TIAGGMVVSTDYSLICRADQFGDLMH 62 (141) Q Consensus 1 MA~TeDl~~FLdt--aefav~~taGS~s---------------~~gILD~Pse-vIAggmvlStdY~L~~kas~fg~l~~ 62 (141) |-.+.++-.|+++ -.|.+.-+.|+.. +.|+.-.|+. -|-|..+.+.|-+++|.++- ++-. T Consensus 7 ~~~~~~~I~~fsd~~G~~~~~t~~g~~~dv~G~ev~~p~~~~~~~Gv~~~~~~reIDg~lIq~gDvk~i~~a~v--eik~ 84 (123) T protein:vir:79 7 RSMASAGINFFSDGTGEFDCITQPGSVEIVGGIEVEKPEIKVKIKGLVRAPRTREVDGEVIRVTDKLGVFNADV--ELKN 84 (123) T ss_pred HHHHHHHHHhhccCCCceeeeecCcceeecCCeeccccceEEeEEEEeecCCccccCCeeEEeccEEEEEecce--eecc Confidence 2223445555543 3455444454443 3445544432 46788999999999999975 7889 Q ss_pred cCcceeccccccccCCCccccccce--eeeeeeeccCcccCCccceeeccccccc Q lcl|NC_015465. 63 GAGINVDGYPYTLIGPPMLLDDGAF--CSLTLQRTVTPEQNTSDDTVLDGDSVGT 115 (141) Q Consensus 63 gtsItVd~~~YT~Vr~~~lIDDG~f--~eL~L~Kt~~~~~~~~~~~~~~~~~~~~ 115 (141) |+-|.|||++|. |=++|+|---.. |=-.-.|.| +++. T Consensus 85 Gd~i~vDge~~r-VV~~~pvkPa~~~I~y~~qLRrv---------------~~~~ 123 (123) T protein:vir:79 85 GYQIDIDGERYV-MVETRPIRPTSITVAYRPIMRRV---------------AVHG 123 (123) T ss_pred CCEEEECCeEEE-EecCccccchhhhhhhhhhhccc---------------ccCC Confidence 999999999999 666666543211 000011111 1111 No 4 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=2.93 E-value=23 Score=13.10 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=54.3 Q ss_pred Ccccccceeee--ccccceeeEee---c-------------------cccceeeeeCch-hhhcCCeeeecceeEEEecc Q lcl|NC_015465. 1 MAFTEDLDLFL--DTAEMAVPVTA---G-------------------SVSGNGVLDMPS-ETIAGGMVVSTDYSLICRAD 55 (141) Q Consensus 1 MA~TeDl~~FL--dtaefav~~ta---G-------------------S~s~~gILD~Ps-evIAggmvlStdY~L~~kas 55 (141) |||-..+..=- -=++|+-+||. + +.++.|++..=+ .-|-|..+.+-|=+|+|-+. T Consensus 1 M~~y~~~~~~a~~Li~kfG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~~~~idGtlI~~GD~~l~~~a~ 80 (122) T protein:vir:97 1 MARFDSAIALAKKLIKKNGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYEQRYIDGQTIRMGDQRVFMPAE 80 (122) T ss_pred CccchHHHHHHHHHHHHhCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccchhhccCcEEeecCEEEEEeeC Confidence 66532221100 00245555551 1 123455554433 34557799999999999875 Q ss_pred chh-hhhhcCcceeccccccccCCCcccccc--ceeeeeeee Q lcl|NC_015465. 56 QFG-DLMHGAGINVDGYPYTLIGPPMLLDDG--AFCSLTLQR 94 (141) Q Consensus 56 ~fg-~l~~gtsItVd~~~YT~Vr~~~lIDDG--~f~eL~L~K 94 (141) +.. ...-|+-|.++|+.|.+|....+==+| ..-+|-|.| T Consensus 81 ~~~~~P~~gD~v~~~g~~~~Vi~v~~i~pa~~~v~y~lqlRk 122 (122) T protein:vir:97 81 GLTAPPEVEGLVLRGLEVWKVIAVKPLNPNGQAIMYELQVRQ 122 (122) T ss_pred CCccccccCCEEEeCCEEEEEEeccccCCCCceEEEEEEeeC Confidence 432 123378999999999966553322233 467888888 No 5 >protein:vir:107669 Length: 123 # NCBI annotation: hypothetical protein # Family: family:all:704 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003901;genbank:gi:45686317;genbank:GeneID:2773009 Probab=2.44 E-value=28 Score=12.67 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=52.3 Q ss_pred CcccccceeeeccccceeeE--eecc---------------ccceeeeeCch-hhhcCCeeeecceeEEEeccchhhhhh Q lcl|NC_015465. 1 MAFTEDLDLFLDTAEMAVPV--TAGS---------------VSGNGVLDMPS-ETIAGGMVVSTDYSLICRADQFGDLMH 62 (141) Q Consensus 1 MA~TeDl~~FLdtaefav~~--taGS---------------~s~~gILD~Ps-evIAggmvlStdY~L~~kas~fg~l~~ 62 (141) -+-++.+-.|++++..-..+ ..|+ -.+.|+.-.|+ --|=|..+++.|-+++|.+.- .+-. T Consensus 7 ~~~a~~~I~~fsd~~g~~~l~t~~~~~~~v~G~Ev~~p~~~~~~~G~~~~y~~reIDG~lI~~gDvk~if~a~v--eik~ 84 (123) T protein:vir:10 7 ERMARKGVAFFTDPSRPMNLIKQGEYGYDENGFEIPPMEQVIPISGATRRPNAREIDGETIRASDILGIFNNDH--EINE 84 (123) T ss_pred HHHHHHHHhhhcCCCCeEEeeeCCcccccCCCeecccCCeeeeeEEEEeeccccccccceeeeccEEEeeccce--eecc Confidence 11223444455443333333 2221 12345554443 357889999999999999854 6788 Q ss_pred cCcceeccccccccCCCccccccce--eeeeeeeccCcccCCccceeeccccccc Q lcl|NC_015465. 63 GAGINVDGYPYTLIGPPMLLDDGAF--CSLTLQRTVTPEQNTSDDTVLDGDSVGT 115 (141) Q Consensus 63 gtsItVd~~~YT~Vr~~~lIDDG~f--~eL~L~Kt~~~~~~~~~~~~~~~~~~~~ 115 (141) |+-|.|||+.|. |-+++++---.. |=-.-.|.| +|+. T Consensus 85 Gd~I~vDg~~~r-VV~~~pvkPa~~~I~y~~qLRrv---------------~~~~ 123 (123) T protein:vir:10 85 GDYIEIDGIRHV-VVDARPVQASLEPVAYRPVLRRV---------------SVGG 123 (123) T ss_pred CCEEEECCeEEE-EecCcccchhhhhhhhhhhhcee---------------ccCC Confidence 999999999999 555555432110 111111112 1111 No 6 >protein:vir:80382 Length: 122 # NCBI annotation: BcepGomrgp10 # Family: family:all:704 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210230;genbank:gi:146329922;genbank:GeneID:5123491 Probab=1.40 E-value=47 Score=11.39 Aligned_cols=89 Identities=8% Similarity=0.038 Sum_probs=50.3 Q ss_pred Cccc---------ccceeeeccccceeeEee----c----------------cccceeeeeC-chhhhcCCeeeecceeE Q lcl|NC_015465. 1 MAFT---------EDLDLFLDTAEMAVPVTA----G----------------SVSGNGVLDM-PSETIAGGMVVSTDYSL 50 (141) Q Consensus 1 MA~T---------eDl~~FLdtaefav~~ta----G----------------S~s~~gILD~-PsevIAggmvlStdY~L 50 (141) ||=. ..|- ++|+-+||. + +....|++.. -..-|-|=.+.+-|-++ T Consensus 1 m~~f~Y~rl~~~A~~Li-----~kfG~~~tv~~~~~~~~~~~~~~P~t~~~~~~~v~gv~~~y~~r~idGtlIq~GD~~~ 75 (122) T protein:vir:80 1 MKSFNYPRLLKTVDRLI-----EKFGEECFIVEYIDAVDPTRPFDPPVRTEVRTPVKGVFVKATEKHADGTLIHIGDQLV 75 (122) T ss_pred CCCcchhHHHHHHHHHH-----HHhCCCeEEEEeeccCCCCCccccCCCceeeccceEEEecccccccCCcEEeeCCEEE Confidence 3310 0110 133333333 2 2223344332 22334455788999999 Q ss_pred EEeccchhhh-hhcCcceeccccccccCCCccccccc--eeeeeeee Q lcl|NC_015465. 51 ICRADQFGDL-MHGAGINVDGYPYTLIGPPMLLDDGA--FCSLTLQR 94 (141) Q Consensus 51 ~~kas~fg~l-~~gtsItVd~~~YT~Vr~~~lIDDG~--f~eL~L~K 94 (141) .|-++..--. .-|+-|.++|+.|.+|...-+==+|. .-|+-|.| T Consensus 76 ~~~a~~~~~~P~~~D~v~~~g~~~~Vi~v~p~~pag~~v~y~~q~Rk 122 (122) T protein:vir:80 76 LISGSLKREAANIKGDLFRGAEKWKMWNVVPLKPGPVNMLFKIKVSQ 122 (122) T ss_pred EEecccccccCCcCCEEEeCCeeEEEEeccccCCCCceEEEEEEEeC Confidence 9888665322 23678999999999777655444565 66788888 No 7 >protein:vir:104346 Length: 123 # NCBI annotation: conserved phage-related protein # Family: family:all:704 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398974;genbank:gi:81343958;genbank:GeneID:3778878 Probab=1.18 E-value=55 Score=11.01 Aligned_cols=94 Identities=21% Similarity=0.333 Sum_probs=49.0 Q ss_pred Ccc-cccceeee-----------ccccceeeEeeccccceeeeeCch-hhhcCCeeeecceeEEEeccchhhhhhcCcce Q lcl|NC_015465. 1 MAF-TEDLDLFL-----------DTAEMAVPVTAGSVSGNGVLDMPS-ETIAGGMVVSTDYSLICRADQFGDLMHGAGIN 67 (141) Q Consensus 1 MA~-TeDl~~FL-----------dtaefav~~taGS~s~~gILD~Ps-evIAggmvlStdY~L~~kas~fg~l~~gtsIt 67 (141) .++ +..-.++. +..|-..|.+ +-.+-|++=.+. .-|.|..+.+.|-++++.++- ++--|+-|. T Consensus 14 I~~f~~~~gv~~~~t~~~~v~~v~G~ev~~p~~--~~~~~Gv~~~y~~r~IDG~lIq~gD~~~i~~a~~--eik~Gd~i~ 89 (123) T protein:vir:10 14 INFFSDANGVYEMSTGAGYVEIVNGVEVEVPAQ--TFQLKGLVREIKTRDIDGEFIQFGDKRGIFTAQV--EIKQGYQIK 89 (123) T ss_pred HHHhCCCCCceEEecCCCeeeCCCCceeeccce--eEeeEEEeccCChhhccceeeeeccEEEEEecCc--eeccCCEEE Confidence 111 11112221 1112222222 222344444443 367999999999999999864 677899999 Q ss_pred eccccccccCCCcccc-ccce--eeeeeeeccCcc Q lcl|NC_015465. 68 VDGYPYTLIGPPMLLD-DGAF--CSLTLQRTVTPE 99 (141) Q Consensus 68 Vd~~~YT~Vr~~~lID-DG~f--~eL~L~Kt~~~~ 99 (141) +||+.|. |=.+++|- .|.- -.+-|.|--+-- T Consensus 90 vdGe~~r-VV~~~pikPa~~~v~y~~qlRrv~~~~ 123 (123) T protein:vir:10 90 VDGETFV-VVDPRPVKPTGTTVGYRPILRRVATYG 123 (123) T ss_pred ECCeEEE-EecCCccCccceeEEEeeeeeeeeecC Confidence 9999999 44444443 2321 112222211111 No 8 >protein:vir:1582 Length: 117 # NCBI annotation: minor capsid protein # Family: family:all:2747 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695164;swissprot:trembl:o03932;genbank:gi:23455805;uniprot:O03932;genbank:GeneID:955538 Probab=0.96 E-value=67 Score=10.52 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=36.4 Q ss_pred Ccccccceeee-----------cccccee-----e----------EeeccccceeeeeCchhhhcCCeeeecceeEEEec Q lcl|NC_015465. 1 MAFTEDLDLFL-----------DTAEMAV-----P----------VTAGSVSGNGVLDMPSETIAGGMVVSTDYSLICRA 54 (141) Q Consensus 1 MA~TeDl~~FL-----------dtaefav-----~----------~taGS~s~~gILD~PsevIAggmvlStdY~L~~ka 54 (141) |-..-|...+. +..+++= | -|+.|+++|. -++.|-+++. +.|+- T Consensus 1 ~m~~ipk~~l~~sitlk~~~~~~~d~yg~~~y~~pi~I~nvrvd~~t~ysgt~n~-----Rq~~~navif-----~y~~~ 70 (117) T protein:vir:15 1 MMMKPPKWMCQQTITLTLTDPTKTDEWGQLLTGEPVTIEHCVVQPQTIYSGSNND-----RTIVANAVVF-----VYAGI 70 (117) T ss_pred CCCccchhhccceEEEEEeccCCcCCCCCeeecCceeeeeeEecccceecccCCC-----CeEEeceEEE-----Eeccc Confidence 11111111111 1111111 1 1344444432 2444555553 33444 Q ss_pred c----chhhhhhcCcceeccccccccC--CC-cccccccee-eeeee Q lcl|NC_015465. 55 D----QFGDLMHGAGINVDGYPYTLIG--PP-MLLDDGAFC-SLTLQ 93 (141) Q Consensus 55 s----~fg~l~~gtsItVd~~~YT~Vr--~~-~lIDDG~f~-eL~L~ 93 (141) | .|-.---|..|..+|..||+.+ ++ .+..+-+|| ||-.. T Consensus 71 s~P~~~~~~~~~g~ki~f~G~eYtI~~i~~~~ep~sn~vy~yElEVi 117 (117) T protein:vir:15 71 SNPLLTVTKNNVGSKLVFEGEEYTVQKIIDNREPFSNELHSYELEVL 117 (117) T ss_pred CCcceEEecccccceeeeCCeeEEeeeeeecccCcCCcEEEEEEEeC Confidence 4 2333333889999999999422 22 256666776 44333 No 9 >protein:vir:100632 Length: 381 # NCBI annotation: 77ORF006 # Family: family:all:635 # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958606;genbank:gi:41189521;genbank:GeneID:2743778 Probab=0.95 E-value=51 Score=11.20 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=14.7 Q ss_pred CcccccceeeeccccceeeEeeccccceeeeeCchhhhcCCeeeecceeEEEeccchhhhhhcCcceeccccccccCCCc Q lcl|NC_015465. 1 MAFTEDLDLFLDTAEMAVPVTAGSVSGNGVLDMPSETIAGGMVVSTDYSLICRADQFGDLMHGAGINVDGYPYTLIGPPM 80 (141) Q Consensus 1 MA~TeDl~~FLdtaefav~~taGS~s~~gILD~PsevIAggmvlStdY~L~~kas~fg~l~~gtsItVd~~~YT~Vr~~~ 80 (141) ..|++|.-+|+-.. ..+|.++- T Consensus 335 ~~~~~d~~~f~a~~-----------------------r~dG~~~~----------------------------------- 356 (381) T protein:vir:10 335 TLALDDMDLYTAKQ-----------------------FAYGKAKD----------------------------------- 356 (381) T ss_pred hhhhcCceEEEEEE-----------------------EEcCEEec----------------------------------- Confidence 55556666665441 12222222 Q ss_pred cccccceeeeeeeec-cCcccCCcccee Q lcl|NC_015465. 81 LLDDGAFCSLTLQRT-VTPEQNTSDDTV 107 (141) Q Consensus 81 lIDDG~f~eL~L~Kt-~~~~~~~~~~~~ 107 (141) +-+|.=+.|..- -.|.-..+..|+ T Consensus 357 ---~~A~~v~~l~~~~~~~~~~~~~~~~ 381 (381) T protein:vir:10 357 ---NKVAAVWKLDLKGHKPALEDTEETL 381 (381) T ss_pred ---CCcEEEEEEeecCCccccccccccC Confidence 222222222111 111112222222 No 10 >protein:vir:9509 Length: 381 # NCBI annotation: hypothetical protein # Family: family:all:635 # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835556;genbank:gi:30043951;genbank:GeneID:1260537 Probab=0.84 E-value=59 Score=10.83 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=15.6 Q ss_pred CcccccceeeeccccceeeEeeccccceeeeeCchhhhcCCeeeecce----eEEEeccchhhhhhcCcceeccccccc Q lcl|NC_015465. 1 MAFTEDLDLFLDTAEMAVPVTAGSVSGNGVLDMPSETIAGGMVVSTDY----SLICRADQFGDLMHGAGINVDGYPYTL 75 (141) Q Consensus 1 MA~TeDl~~FLdtaefav~~taGS~s~~gILD~PsevIAggmvlStdY----~L~~kas~fg~l~~gtsItVd~~~YT~ 75 (141) ..|++|.-+|.-..- .+|.++-.+- +|..+ |..=+++...-|| T Consensus 335 ~~~~~d~~~f~a~~r-----------------------~dg~~~~~~A~~v~~l~~~---------~~~~~~~~~~~~~ 381 (381) T protein:vir:95 335 TLALDDMDLYTAKQF-----------------------AYGKAKDNKVAAVWKLDLK---------GHKPALEGTEETL 381 (381) T ss_pred hHhhcCCeEEEEEEE-----------------------EcCEEecCceEEEEEEEec---------CCCcCcccccccC Confidence 556677777765522 2333322211 11111 2222222222222 Done!