Query lcl|NC_015286.1_cdsid_YP_004323954.1 [gene=gp23] [protein=precursor of major head subunit] [protein_id=YP_004323954.1] [location=114083..115456] Match_columns 457 No_of_seqs 162 out of 418 Neff 5.0 Searched_HMMs 1612 Date Thu Nov 7 14:33:11 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_116 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_116_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:103181 Length: 457 100.0 1E-246 9E-250 1368.5 36.4 457 1-457 1-457 (457) 2 protein:vir:104549 Length: 462 100.0 3E-245 2E-248 1361.4 35.5 457 1-457 1-462 (462) 3 protein:vir:104915 Length: 470 100.0 2E-233 1E-236 1296.8 36.1 447 1-457 3-470 (470) 4 protein:vir:106998 Length: 468 100.0 4E-231 3E-234 1283.6 35.4 446 1-457 1-468 (468) 5 protein:vir:106286 Length: 534 100.0 3E-222 2E-225 1235.5 35.1 449 1-456 1-534 (534) 6 protein:vir:101039 Length: 529 100.0 2E-219 1E-222 1219.5 33.1 448 1-456 3-529 (529) 7 protein:vir:101811 Length: 529 100.0 4E-219 2E-222 1218.1 33.7 448 1-456 3-529 (529) 8 protein:vir:6901 Length: 522 # 100.0 2E-218 1E-221 1214.1 34.9 448 1-456 1-522 (522) 9 protein:vir:103463 Length: 521 100.0 9E-217 5E-220 1205.1 34.9 448 1-456 1-521 (521) 10 protein:vir:7214 Length: 521 # 100.0 2E-216 1E-219 1203.5 34.7 448 1-456 1-521 (521) 11 protein:vir:5670 Length: 514 # 100.0 3E-216 2E-219 1202.5 32.0 445 4-456 1-514 (514) 12 protein:vir:100603 Length: 529 100.0 9E-216 5E-219 1199.7 33.4 451 1-456 3-529 (529) 13 protein:vir:107947 Length: 519 100.0 1E-215 7E-219 1199.1 33.6 451 1-456 1-519 (519) 14 protein:vir:80986 Length: 528 100.0 1E-214 8E-218 1193.3 34.5 449 1-456 1-528 (528) 15 protein:vir:98143 Length: 524 100.0 2E-214 1E-217 1192.0 32.9 446 1-456 1-524 (524) 16 protein:vir:6601 Length: 528 # 100.0 5E-214 3E-217 1189.8 34.2 448 1-456 1-528 (528) 17 protein:vir:5942 Length: 523 # 100.0 5E-193 3E-196 1074.7 32.5 410 1-440 1-523 (523) 18 protein:vir:41 Length: 299 # N 96.9 0.00029 1.8E-07 40.0 16.9 272 56-445 1-299 (299) 19 protein:vir:81100 Length: 415 96.7 0.0004 2.5E-07 39.2 17.9 340 1-444 29-415 (415) 20 protein:vir:98339 Length: 415 96.7 0.0004 2.5E-07 39.2 17.9 340 1-444 29-415 (415) 21 protein:vir:79987 Length: 415 96.7 0.0004 2.5E-07 39.2 17.9 340 1-444 29-415 (415) 22 protein:vir:78523 Length: 338 96.2 0.00089 5.5E-07 37.3 16.9 309 39-448 1-338 (338) 23 protein:vir:1433 Length: 435 # 95.9 0.0012 7.7E-07 36.5 19.1 335 1-444 1-435 (435) 24 protein:vir:8420 Length: 477 # 95.9 0.0013 8E-07 36.4 19.6 346 1-448 67-477 (477) 25 protein:vir:3845 Length: 395 # 95.4 0.0021 1.3E-06 35.2 19.7 325 1-444 1-395 (395) 26 protein:vir:7409 Length: 408 # 95.0 0.0029 1.8E-06 34.5 18.7 329 1-447 5-408 (408) 27 protein:vir:4600 Length: 415 # 94.8 0.0034 2.1E-06 34.1 18.3 341 1-444 29-415 (415) 28 protein:vir:4700 Length: 415 # 94.8 0.0034 2.1E-06 34.1 18.3 341 1-444 29-415 (415) 29 protein:vir:9410 Length: 415 # 94.8 0.0034 2.1E-06 34.1 17.8 342 1-444 29-415 (415) 30 protein:vir:4511 Length: 409 # 94.8 0.0034 2.1E-06 34.1 16.8 328 1-444 29-409 (409) 31 protein:vir:9820 Length: 272 # 94.4 0.0044 2.7E-06 33.5 15.3 269 114-451 1-272 (272) 32 protein:vir:3033 Length: 272 # 94.4 0.0044 2.7E-06 33.5 15.3 269 114-451 1-272 (272) 33 protein:vir:95898 Length: 274 93.8 0.0019 1.2E-06 35.5 8.9 268 114-447 1-274 (274) 34 protein:vir:96262 Length: 274 93.8 0.0019 1.2E-06 35.5 8.9 268 114-447 1-274 (274) 35 protein:vir:6212 Length: 434 # 93.4 0.0032 2E-06 34.2 9.5 335 1-444 59-434 (434) 36 protein:vir:104256 Length: 458 93.2 0.0085 5.3E-06 31.9 17.4 332 1-439 73-458 (458) 37 protein:vir:96123 Length: 274 92.4 0.011 6.9E-06 31.3 11.0 269 111-447 1-274 (274) 38 protein:vir:93742 Length: 274 92.3 0.012 7.5E-06 31.1 13.2 270 107-447 1-274 (274) 39 protein:vir:81227 Length: 413 91.8 0.014 8.8E-06 30.7 18.6 333 1-457 32-411 (413) 40 protein:vir:3991 Length: 404 # 91.5 0.015 9.6E-06 30.5 21.7 330 1-444 5-404 (404) 41 protein:vir:10364 Length: 390 91.3 0.017 1E-05 30.3 19.3 323 1-454 1-390 (390) 42 protein:vir:105334 Length: 276 91.2 0.017 1.1E-05 30.3 12.2 265 114-438 1-276 (276) 43 protein:vir:4092 Length: 390 # 90.8 0.019 1.2E-05 30.0 18.6 332 1-444 1-390 (390) 44 protein:vir:80376 Length: 435 90.5 0.021 1.3E-05 29.8 18.7 335 1-444 41-435 (435) 45 protein:vir:1886 Length: 385 # 89.8 0.024 1.5E-05 29.5 17.9 325 1-439 18-385 (385) 46 protein:vir:191 Length: 385 # 89.8 0.024 1.5E-05 29.5 17.9 325 1-439 18-385 (385) 47 protein:vir:100172 Length: 394 89.7 0.025 1.6E-05 29.4 19.8 332 1-450 31-394 (394) 48 protein:vir:3613 Length: 272 # 89.4 0.026 1.6E-05 29.2 13.1 268 107-440 1-272 (272) 49 protein:vir:7771 Length: 330 # 89.1 0.028 1.8E-05 29.1 19.5 286 53-438 1-330 (330) 50 protein:vir:6242 Length: 390 # 89.0 0.029 1.8E-05 29.0 16.9 321 1-439 4-390 (390) 51 protein:vir:100247 Length: 425 89.0 0.029 1.8E-05 29.0 17.7 313 1-439 50-425 (425) 52 protein:vir:9309 Length: 324 # 88.8 0.03 1.9E-05 28.9 20.7 293 34-440 1-324 (324) 53 protein:vir:4830 Length: 397 # 88.5 0.032 2E-05 28.8 18.9 323 1-446 34-397 (397) 54 protein:vir:107593 Length: 392 87.8 0.036 2.2E-05 28.5 18.9 319 1-443 35-392 (392) 55 protein:vir:102082 Length: 392 87.8 0.036 2.2E-05 28.5 18.9 319 1-443 35-392 (392) 56 protein:vir:102873 Length: 392 87.8 0.036 2.2E-05 28.5 18.9 319 1-443 35-392 (392) 57 protein:vir:105004 Length: 392 87.8 0.036 2.2E-05 28.5 18.9 319 1-443 35-392 (392) 58 protein:vir:100884 Length: 389 87.7 0.037 2.3E-05 28.4 17.6 328 1-444 31-389 (389) 59 protein:vir:97053 Length: 390 87.6 0.038 2.3E-05 28.4 19.9 324 1-454 1-390 (390) 60 protein:vir:4856 Length: 293 # 87.5 0.038 2.4E-05 28.3 16.8 273 48-446 1-293 (293) 61 protein:vir:81160 Length: 371 87.5 0.039 2.4E-05 28.3 16.4 315 1-438 22-371 (371) 62 protein:vir:8102 Length: 543 # 87.4 0.039 2.4E-05 28.3 17.3 322 1-439 173-543 (543) 63 protein:vir:103955 Length: 324 87.2 0.04 2.5E-05 28.2 20.7 292 35-440 1-324 (324) 64 protein:vir:4226 Length: 326 # 86.6 0.044 2.7E-05 28.0 18.0 296 34-438 1-326 (326) 65 protein:vir:78223 Length: 333 86.5 0.045 2.8E-05 28.0 16.3 305 39-439 1-333 (333) 66 protein:vir:4953 Length: 397 # 86.5 0.045 2.8E-05 28.0 18.1 318 1-440 34-397 (397) 67 protein:vir:94142 Length: 304 86.5 0.045 2.8E-05 28.0 17.7 276 53-437 1-304 (304) 68 protein:vir:105905 Length: 304 86.5 0.045 2.8E-05 28.0 17.7 276 53-437 1-304 (304) 69 protein:vir:96223 Length: 324 86.1 0.048 3E-05 27.8 20.0 299 22-440 1-324 (324) 70 protein:vir:739 Length: 231 # 86.1 0.048 3E-05 27.8 12.1 217 160-456 1-231 (231) 71 protein:vir:99749 Length: 324 85.8 0.05 3.1E-05 27.7 20.0 298 31-440 1-324 (324) 72 protein:vir:4339 Length: 395 # 84.3 0.061 3.8E-05 27.2 21.2 325 1-438 25-395 (395) 73 protein:vir:80930 Length: 278 84.3 0.061 3.8E-05 27.2 13.3 274 114-444 1-278 (278) 74 protein:vir:100135 Length: 418 83.8 0.066 4.1E-05 27.1 18.8 324 1-443 55-418 (418) 75 protein:vir:2344 Length: 397 # 83.6 0.067 4.2E-05 27.0 17.2 295 56-457 1-347 (397) 76 protein:vir:104085 Length: 320 82.8 0.074 4.6E-05 26.8 17.0 289 34-438 1-320 (320) 77 protein:vir:3870 Length: 400 # 82.8 0.074 4.6E-05 26.8 16.6 316 1-439 58-400 (400) 78 protein:vir:1239 Length: 274 # 82.6 0.076 4.7E-05 26.7 11.4 270 114-446 1-274 (274) 79 protein:vir:94494 Length: 274 82.2 0.079 4.9E-05 26.6 12.1 271 107-446 1-274 (274) 80 protein:vir:97433 Length: 274 82.2 0.079 4.9E-05 26.6 12.1 271 107-446 1-274 (274) 81 protein:vir:81070 Length: 390 81.3 0.087 5.4E-05 26.4 20.1 319 1-454 32-390 (390) 82 protein:vir:80684 Length: 315 79.5 0.1 6.5E-05 26.0 18.3 286 58-445 1-315 (315) 83 protein:vir:3364 Length: 347 # 79.0 0.11 6.7E-05 25.9 11.8 311 97-442 1-347 (347) 84 protein:vir:96762 Length: 632 78.7 0.11 6.9E-05 25.8 19.4 318 1-438 269-632 (632) 85 protein:vir:8187 Length: 311 # 78.2 0.12 7.3E-05 25.7 15.5 286 60-439 1-311 (311) 86 protein:vir:485 Length: 407 # 77.1 0.13 7.9E-05 25.5 18.2 333 1-445 27-407 (407) 87 protein:vir:1025 Length: 408 # 77.1 0.13 8E-05 25.5 20.0 320 1-440 5-408 (408) 88 protein:vir:105038 Length: 428 76.7 0.13 8.3E-05 25.4 15.1 330 1-447 31-428 (428) 89 protein:vir:9574 Length: 300 # 76.3 0.14 8.5E-05 25.3 17.9 281 59-438 1-300 (300) 90 protein:vir:94711 Length: 347 75.3 0.15 9.2E-05 25.1 12.0 305 97-439 1-347 (347) 91 protein:vir:2504 Length: 305 # 71.4 0.2 0.00012 24.5 17.6 285 58-444 1-305 (305) 92 protein:vir:4997 Length: 397 # 71.2 0.2 0.00012 24.4 20.6 322 1-444 34-397 (397) 93 protein:vir:1638 Length: 298 # 70.6 0.21 0.00013 24.3 16.2 278 59-445 1-298 (298) 94 protein:vir:101607 Length: 379 69.1 0.23 0.00014 24.1 18.3 324 1-456 23-379 (379) 95 protein:vir:97148 Length: 324 67.6 0.25 0.00015 23.9 19.4 300 22-440 1-324 (324) 96 protein:vir:78830 Length: 324 66.0 0.27 0.00017 23.7 20.3 298 34-440 1-324 (324) 97 protein:vir:96392 Length: 324 66.0 0.27 0.00017 23.7 20.3 298 34-440 1-324 (324) 98 protein:vir:1084 Length: 437 # 64.6 0.3 0.00018 23.5 14.1 312 1-440 68-437 (437) 99 protein:vir:1268 Length: 397 # 64.4 0.3 0.00019 23.4 17.6 319 1-439 40-397 (397) 100 protein:vir:94673 Length: 419 63.5 0.32 0.0002 23.3 19.4 338 1-441 31-419 (419) 101 protein:vir:96833 Length: 275 60.9 0.36 0.00023 23.0 14.6 260 114-442 1-275 (275) 102 protein:vir:101650 Length: 497 58.7 0.41 0.00025 22.7 20.0 346 1-444 67-497 (497) 103 protein:vir:7855 Length: 497 # 58.7 0.41 0.00025 22.7 20.0 346 1-444 67-497 (497) 104 protein:vir:9704 Length: 394 # 57.5 0.43 0.00027 22.6 15.6 315 1-440 53-394 (394) 105 protein:vir:1383 Length: 421 # 57.3 0.44 0.00027 22.5 21.6 330 1-457 35-414 (421) 106 protein:vir:4456 Length: 401 # 56.6 0.45 0.00028 22.5 16.6 317 1-439 28-401 (401) 107 protein:vir:8885 Length: 347 # 56.1 0.46 0.00029 22.4 11.0 306 97-439 1-347 (347) 108 protein:vir:94622 Length: 341 53.8 0.52 0.00032 22.1 14.7 297 46-440 1-341 (341) 109 protein:vir:5739 Length: 366 # 53.7 0.52 0.00032 22.1 17.6 325 1-447 1-366 (366) 110 protein:vir:1781 Length: 221 # 52.6 0.55 0.00034 22.0 13.5 204 201-431 1-221 (221) 111 protein:vir:3158 Length: 321 # 51.7 0.57 0.00036 21.9 16.3 302 30-445 1-321 (321) 112 protein:vir:9759 Length: 303 # 49.0 0.65 0.0004 21.6 16.5 281 59-440 1-303 (303) 113 protein:vir:95763 Length: 297 47.6 0.7 0.00043 21.4 17.4 275 53-440 1-297 (297) 114 protein:vir:102119 Length: 404 47.3 0.7 0.00044 21.4 20.9 322 1-438 1-404 (404) 115 protein:vir:108211 Length: 318 43.6 0.84 0.00052 21.0 9.4 286 97-457 1-316 (318) 116 protein:vir:1541 Length: 347 # 36.5 1.2 0.00073 20.2 17.5 306 107-442 1-347 (347) 117 protein:vir:3136 Length: 322 # 34.2 1.3 0.00081 19.9 7.6 293 114-448 1-322 (322) 118 protein:vir:98635 Length: 377 31.2 1.5 0.00094 19.6 16.2 328 1-443 3-377 (377) 119 protein:vir:99675 Length: 324 27.7 1.8 0.0011 19.2 13.5 279 148-455 1-324 (324) 120 protein:vir:2430 Length: 318 # 27.0 1.9 0.0012 19.1 16.9 294 26-443 1-318 (318) 121 protein:vir:94424 Length: 387 27.0 1.9 0.0012 19.1 16.4 313 1-444 34-387 (387) 122 protein:vir:96978 Length: 387 27.0 1.9 0.0012 19.1 16.4 313 1-444 34-387 (387) 123 protein:vir:2685 Length: 387 # 27.0 1.9 0.0012 19.1 16.4 313 1-444 34-387 (387) 124 protein:vir:2201 Length: 345 # 26.8 1.9 0.0012 19.0 14.0 300 97-436 1-345 (345) 125 protein:vir:1328 Length: 392 # 26.1 2 0.0012 19.0 16.7 321 1-439 15-392 (392) 126 protein:vir:9361 Length: 402 # 23.8 2.3 0.0014 18.6 17.3 312 1-438 57-402 (402) No 1 >protein:vir:103181 Length: 457 # NCBI annotation: gp135 # Family: family:all:364 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717802;genbank:gi:113200639;genbank:GeneID:4239190 Probab=100.00 E-value=1.4e-246 Score=1368.47 Aligned_cols=457 Identities=91% Similarity=1.349 Sum_probs=448.8 Q ss_pred CchHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHHhhhhhhccccccccccccccccccceehhhhH Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTGYTGASTATGPVAGFDPVLISLIR 80 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~tg~i~~~~P~Lv~l~R 80 (457) ||+|+|+|||+||||||++|||++.|||+|+++|||||||||+|++++|+|+.++||++.+|++|++|+++||+||+||| T Consensus 1 m~~~~l~~~w~~~l~~~~~~~i~~~~~~~~~~~~lenq~~~~~~~~~~l~ea~~~~g~~~~s~~t~~v~~~~P~Li~l~R 80 (457) T protein:vir:10 1 MSFQNLQEKWAPVLEHDSLPEIGDSYKKGVVAQLLENQEKAIAEEGKILTETLQTTGYTGGDTVTGPVAGFDPVLISLIR 80 (457) T ss_pred CchHHHHHHhhHhhccCccchhhhhHHHHHHHHHhhhHHHHHHhccccccccccccCCCcccccccccccccchhhhhhH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccc Q lcl|NC_015286. 81 RSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALL 160 (457) Q Consensus 81 Ra~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~ 160 (457) |++|||||+|||||||||||||||||||+||+++.++...+.+|||||||++.|||..++.........+...+++++.. T Consensus 81 ra~p~LIa~DIwGVQPmTgPTGLIFAmRsrY~~q~~~~~a~~~EAl~nEadt~fSg~~~~~~~~~~~~~~~~~gt~~~~~ 160 (457) T protein:vir:10 81 RSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERNPAAAGYDEAFFNEPNAGFSGGPGAYDPGATGVTNDAEGTNPALL 160 (457) T ss_pred HHHhhhhhhhcceeecCCCcceeeeeeeeeecCccccccccccceeeeccCcccCccccccccccccccccccccccccc Confidence 99999999999999999999999999999999999887778899999999999999988877777777788899999999 Q ss_pred cccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHH Q lcl|NC_015286. 161 NDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANI 240 (457) Q Consensus 161 ~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanI 240 (457) ++...+++..++++.||+|+++|+||+++++.+|+||+|+||||+|||||||||||||||||||||||||||||+||+|| T Consensus 161 ~~~~~~~~~~~~~~~gmsTA~aE~lgd~~~n~~f~EMaFsIeK~tVtAKSRaLKAEYTiELAQDLKAiHGLDAEtELaNI 240 (457) T protein:vir:10 161 NDSPAGTYEQADDATGMSTATVEALDDSTANTAFREMGFSIEKVTVTARARALKAEYSIEMAQDLKAIHGLDAEQELANI 240 (457) T ss_pred CccccccccccccccchhhhhhhccCCCCCccchhhheeEEEEEEEeeeccceeccccHHHHHHHHHhcCCChhHHHHHH Confidence 99988888899999999999999999988888999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEch Q lcl|NC_015286. 241 LSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSA 320 (457) Q Consensus 241 LStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~ 320 (457) ||||||+||||||||+||++|+|||++|++++|||||+++++|||++|+||+|+|||+||||+|+|||+||+|||||||+ T Consensus 241 LStEImlEINReii~~l~~~a~~~~~~~~~~~gv~dl~~~~~g~~~~e~~k~L~~~i~~ean~i~~~T~rg~gn~~i~S~ 320 (457) T protein:vir:10 241 LSTEILAEINREVVRTIYTNAVAGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGHQTRRGKGNILICSA 320 (457) T ss_pred HHHHHHHHhhHHHHHhHhhhheeeeccccccceeeeeeccccchhhHHHHHHHHHHHHHHHHHHHHhhccccceEEEEch Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccc Q lcl|NC_015286. 321 DVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVP 400 (457) Q Consensus 321 ~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~ 400 (457) |||++|++||||+++|+++++++++++|+++.+|+|+|+|||+||||||+.+|+++|||+|||||++|+|+||||||||| T Consensus 321 ~Va~~L~~sg~l~~~p~~~~~~~~~~~d~~~~~~~G~l~~r~~vy~D~Ya~~ns~~dy~~vG~KG~~~~~~glfy~PYv~ 400 (457) T protein:vir:10 321 DVVSALGMAGVLDYTPALNGNNGLAGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHFYVAGYKGTSPYDAGLFYCPYVP 400 (457) T ss_pred hHHHHHhhcccccccchhhccccccccccccceeEEEecCCeEEEEecccccCCccceEEEEEeCCcceecceeeccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccCCccccceeeeeeeeeeeeccccccccCcccccccccchheeeeeeeecC Q lcl|NC_015286. 401 LQQVRAINPDTFQPKIGFKTRYGMVSNPFAQGLTQGSGALTANTNRYYRRVQVANLM 457 (457) Q Consensus 401 ~~~~~~~Dp~s~qP~~g~~tRY~l~~nP~~~~~~~~~~~~~~~~n~~~~r~~~~~l~ 457 (457) |+++|++||+||||++||||||||++|||+.+++|+++++++|.|.|||||+|++|| T Consensus 401 l~~~~~~dp~sfqP~~g~~tRY~l~~NP~~~~~~~~~~~~~~~~n~~~~rs~vs~ll 457 (457) T protein:vir:10 401 LQQVRAINPDTFQPKIGFKTRYGMVSNPFAGGLTQGSGALTVNANKYYRRVQVANLM 457 (457) T ss_pred ccccCccCCccccceeeeeeeeeeeecccccccccccccccccchhhcceeeeeecC Confidence 999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:104549 Length: 462 # NCBI annotation: gp23 # Family: family:all:364 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214669;genbank:gi:61806310;genbank:GeneID:3294604 Probab=100.00 E-value=2.7e-245 Score=1361.38 Aligned_cols=457 Identities=87% Similarity=1.271 Sum_probs=438.2 Q ss_pred CchHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHHhhhhhhccccccccccccccccccceehhhhH Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTGYTGASTATGPVAGFDPVLISLIR 80 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~tg~i~~~~P~Lv~l~R 80 (457) ||+|+|+|||+||||||++|+|++.+||+|+++|||||||||+|++.+|+|+.++||++.+|++|++++++||+||+||| T Consensus 1 ms~~~l~~~w~~~l~~~~~~~i~~~~~~~~~~~~~enq~~~~~~~~~~l~ea~~~~g~~~~~~~t~~~~~~~P~Li~l~R 80 (462) T protein:vir:10 1 MSIQQLQEKWAPVLNHESVPEIKDSYKKGVVAQLLENQENAIREEGQVLNETLQTTGYTTGDTATGPVAGFDPVLISLIR 80 (462) T ss_pred CchHHHHHHhhhhhcccccchhhhhhHHHHHHHHhhhHHHHHHhcccchhccccccCCCcCcccccccccccchhhhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccccccc-----cccccccccc Q lcl|NC_015286. 81 RSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGA-----SDATNDAEGT 155 (457) Q Consensus 81 Ra~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~-----~~~~~~~~gt 155 (457) ||+|||||+|||||||||||||||||||+||+++......+.+||||+|+|+.|||..+...... ........++ T Consensus 81 ra~p~LIa~DIwGVQPMTgPTGLIFAmRsrY~~~~~~~nq~gtEAlfnEadt~fSg~~~~~~~~~~~~~~~~~~~~~~g~ 160 (462) T protein:vir:10 81 RSMPQLIAYDVAGVQPMTGPTGLIFAMRSFYGSERRPANSDFREALFNEPNAGFSGGAGTGLSNYDPTASSSAVNDAEGA 160 (462) T ss_pred HHHhhhhhhcceeeecCCcchhhhheeeeeccCCccccccccchhhhccCCcCccccccccccccccccccccccccccc Confidence 99999999999999999999999999999999887766677889999999999999765443322 2233445667 Q ss_pred ccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhH Q lcl|NC_015286. 156 NPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQ 235 (457) Q Consensus 156 ~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ 235 (457) ++...++...+++..++.+.||+|+.+|+||+++++..|+||+|+||||+|||||||||||||||||||||||||||||+ T Consensus 161 ~~~~~~~~~~g~~~~~~~~~GM~Ta~aE~lg~~s~n~~f~EMaFsIeK~tVtAKSRaLKAEYTiELAQDLKAIHGLDAEt 240 (462) T protein:vir:10 161 NPGLLNDSPAGTYEVTGDATGMATATAEALDDSSASTAFREMGFSIEKVTVTAKSRALKAEYSIEMAQDLKAIHGLDAES 240 (462) T ss_pred cceeecCCCccceecccccccccchhccccCCccCCcchhhceeEEEEEEEeeeccceeccccHHHHHHHHHhcCCChhH Confidence 77777778888888888899999999999999888889999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccE Q lcl|NC_015286. 236 ELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNI 315 (457) Q Consensus 236 ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~ 315 (457) ||+||||||||+||||||||+||++|+|||++|++++|||||+++++|||++|+||+|+|||+||||+|+|||+||+||| T Consensus 241 ELaNILSTEImlEINReii~~l~~~a~~~k~~~~~~~Gv~dl~~~~~gr~~~e~~k~l~~qi~~ean~i~~~t~r~~~n~ 320 (462) T protein:vir:10 241 ELANILSTEILAEINREVVRTIYVNAVKGAIANTATDGIFDLDVDSNGRWSVEKFKGLLFQIERDSNAIGQETRRGKGNI 320 (462) T ss_pred HHHHHHHHHHHHHhhHHHHhhhhhhheeeecccccccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccceE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEE Q lcl|NC_015286. 316 LICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFY 395 (457) Q Consensus 316 ~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfy 395 (457) ||||+|||++|+|+|||+++|+.++.+.+.++||++.+|+|+|+|||+||||||+.||+++|||+|||||++++|+|||| T Consensus 321 ~i~S~~Va~~La~sG~l~~~p~~~~~~~~~~~d~~~~~~~G~l~~r~~vy~D~Y~~~ns~~dy~~vG~KG~~~~~~glfy 400 (462) T protein:vir:10 321 LICSADVASALGMAGVLDYAPGLQGNSALTGVDDTSSTLVGTLNGRIKVYVDPYSSNVADKHFYVAGYKGTSPYDAGLFY 400 (462) T ss_pred EEEchhHHHHhhhccchhccccccccccccccccccceeEEEecCceEEEEecccCCCcccceEEEEEeCCcccccceee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccCCccccceeeeeeeeeeeeccccccccCcccccccccchheeeeeeeecC Q lcl|NC_015286. 396 CPYVPLQQVRAINPDTFQPKIGFKTRYGMVSNPFAQGLTQGSGALTANTNRYYRRVQVANLM 457 (457) Q Consensus 396 aPYv~~~~~~~~Dp~s~qP~~g~~tRY~l~~nP~~~~~~~~~~~~~~~~n~~~~r~~~~~l~ 457 (457) |||||++++|++||+||||+|||||||||++|||+.+++|+++|+++|+|+||||++|+||| T Consensus 401 ~PYv~l~~~~~~dp~sfqP~~g~~tRY~l~~NP~t~~~~~~~~~~~~~~n~y~r~~~v~~l~ 462 (462) T protein:vir:10 401 CPYVPLQQVRAINPNTFQPKIGFKTRYGMVSNPFSGGLTQGSGALTANANKYYRRVQVANLM 462 (462) T ss_pred ccccccccccccCCccccceeeeeeeeeeeecCCCCCcCCccccccccCcceeeeEEeeccC Confidence 99999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:104915 Length: 470 # NCBI annotation: T4-like major capsid protein # Family: family:all:364 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214367;genbank:gi:61806007;genbank:GeneID:3294435 Probab=100.00 E-value=1.6e-233 Score=1296.83 Aligned_cols=447 Identities=66% Similarity=1.041 Sum_probs=412.7 Q ss_pred Cc-hHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHHhhhhh---hcccc----cccccccccccccc Q lcl|NC_015286. 1 MS-LQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETL---QTTGY----TGASTATGPVAGFD 72 (457) Q Consensus 1 ~~-~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~---~~~g~----~~~st~tg~i~~~~ 72 (457) |+ +|+|+|||+|||||||+|||++.+||+|+++||||||++|+|++++|.|++ ++||+ .+||++|++|++|| T Consensus 3 ~~~~e~l~~kw~p~l~~~~~~~i~~~~~~~v~a~l~enq~~~~~~~~~~l~e~~~~~~~~~~~~~~i~~st~t~~v~~~~ 82 (470) T protein:vir:10 3 MFNSEYLQEKWAPILDYDGLDPIKDSHRRSVTAVLLENQEKELREERNFLSEAPNVNTNSGATAGFSADATAAGPVAGFD 82 (470) T ss_pred cchhHHHHHhhhhhhcCCccchhcchhhhhhhhhhhhhhHHHHhhccchhhhhhhccccccccccccccccccccccccC Confidence 44 899999999999999999999999999999999999999999999999985 55655 68999999999999 Q ss_pred ceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccccccccc----- Q lcl|NC_015286. 73 PVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASD----- 147 (457) Q Consensus 73 P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~----- 147 (457) |+||+||||++|||||+|||||||||||||||||||+||+++.+ +|+||+|+++.|||..++....... T Consensus 83 P~Li~lvRra~p~LIa~DIwGVQPMTgPTGLIFAmRsrY~n~sG------~EaffnEA~T~fSG~~~~~~~~~~~~~~~a 156 (470) T protein:vir:10 83 PVLISLIRRSMPNLVAYDLAGVQPMNGPTGLIFAMRSRYKTQSG------TEALFNEADTAFSGQPDGLDDTSGFTATGA 156 (470) T ss_pred chhhhhHHHHHhhhhhhhhheeecCCccceeeeEEEEEecCCCc------cceeeecCCcccCccccccccccccccccc Confidence 99999999999999999999999999999999999999998764 5999999999999976654322211 Q ss_pred -----cccccccccccccccccc-ccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHH Q lcl|NC_015286. 148 -----ATNDAEGTNPALLNDSPA-GTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIEL 221 (457) Q Consensus 148 -----~~~~~~gt~~~~~~~~~~-gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~EL 221 (457) ......++++..++.... .....++++.||+|+.+|.||+ +++++|+||+|+||||+|||||||||||||||| T Consensus 157 ~~~g~~~~~~~gt~~~~~~~~~~~a~~~~y~~~~GMsTa~aE~lg~-s~~~~f~EMaFsIeK~tVtAKSRaLKAeYTiEL 235 (470) T protein:vir:10 157 NNVGLGTTAQQGSNPGLLNSTAAQTNATDYNVGQGMRTDSAEDLGD-GTGDQFNQMAFSIEKVTVTAKSRALKAEYSLEL 235 (470) T ss_pred ccccccccccccccccccccccccccccccccccccchHHhhhcCC-CCCcccceeeeEEEEEEEEeeccceeccccHHH Confidence 112234455544433322 2345678899999999999995 446789999999999999999999999999999 Q ss_pred HHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHHHHH Q lcl|NC_015286. 222 AQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDA 301 (457) Q Consensus 222 AQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ea 301 (457) |||||||||||||+||+||||||||+||||||||+||++|+|||+.|++++|||||+++++|||++|+||+|+|||+||| T Consensus 236 AQDLKAiHGLDAEtELaNILStEImlEINReii~~l~~~a~~~k~~~~~~~Gv~Dl~~~~~gr~~~e~~~~l~~~i~~ea 315 (470) T protein:vir:10 236 AQDLKAIHGLNAEAELANILSTEILAEINREVIRTIYNVAEPGAQANVAAAGTFDLDTDSNGRWSVEKFKGLIFQIERDA 315 (470) T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhcHHHHHHHhhhhhhceeccccccceEEeecccchhHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccc--cccccceE Q lcl|NC_015286. 302 NAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSA--NVADKHYY 379 (457) Q Consensus 302 n~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~--~~~~~dY~ 379 (457) |+|+|||+||+|||||||++||++|+|+|||++.|++++. .+.|+++++|+|+|+||||||||||+. ||+++||| T Consensus 316 n~i~~~t~r~~~n~~i~S~~Va~~La~sG~l~~~~~~~~~---~~~D~t~~~~~G~l~~~~~vy~d~y~~~~~~a~~dy~ 392 (470) T protein:vir:10 316 NAIAQRTRRGKGNMILCSADVASALTMAGVLDYTPALNAN---LNVDDTGNTFAGILQGKYRVYIDPFSASGGAAATQYY 392 (470) T ss_pred HHHHHhhccccceEEEEchhHHhHhhhccccccccccccc---cccCCCCceEEEEecCceEEEeeccccccCcccccEE Confidence 9999999999999999999999999999999999998763 678999999999999999999999988 68999999 Q ss_pred EEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeeeeeccccccccCcccccccccchheeeeeeeecC Q lcl|NC_015286. 380 VAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGMVSNPFAQGLTQGSGALTANTNRYYRRVQVANLM 457 (457) Q Consensus 380 ~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l~~nP~~~~~~~~~~~~~~~~n~~~~r~~~~~l~ 457 (457) +|||||++|+|+||||||||||+++|++||+||||++||||||||++|||+.+++|+++++++|+|+||||++|+||| T Consensus 393 ~vG~KG~~~~~~glfy~PYv~l~~~~~~dp~sfqP~~g~~tRY~l~~NP~~~~~~~~~~~i~~~~n~y~r~~~v~~l~ 470 (470) T protein:vir:10 393 VVGYKGSSPYDAGLFYCPYVPLQMVRAVGQDTFQPKIGFKTRYGLVENPFSQGTTQGLGTLTRNSNRYYRRVKVANLM 470 (470) T ss_pred EEEEecCcceecceeeccccccccCCCCCCccccceeeeeeeeceeecCcccCCCcccccccCCCCceeeEEEeeccC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:106998 Length: 468 # NCBI annotation: major capsid protein gp23 # Family: family:all:364 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195142;genbank:gi:58532919;uniprot:Q5GQN0;genbank:GeneID:3260495 Probab=100.00 E-value=4.1e-231 Score=1283.64 Aligned_cols=446 Identities=67% Similarity=1.038 Sum_probs=408.2 Q ss_pred Cc-hHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHHhhhhh----hccc-----ccccccccccccc Q lcl|NC_015286. 1 MS-LQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETL----QTTG-----YTGASTATGPVAG 70 (457) Q Consensus 1 ~~-~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~----~~~g-----~~~~st~tg~i~~ 70 (457) |. .|+|+|||+|||||||+|||++.+||+|+++|||||||||+|++.+|+|.+ ++++ .+.++++|++|++ T Consensus 1 ~~~~e~l~~kW~plLe~~~~~~i~~~~k~~i~a~llENQe~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~t~~v~~ 80 (468) T protein:vir:10 1 MFNAEHLQEKWSPVLNHGEAPAIGDRYKRAVTSVLLENQERFLREERGMLNEVAVNSLGAGTIAPAGSALGSANTGGLAG 80 (468) T ss_pred CcchHHHHHhhhHhhcCCccchhccchhhhhhhhhhhhHHHHHhccccccchhhHhhcCCcccchhhhhhhhcccccccc Confidence 76 899999999999999999999999999999999999999999999998854 4444 4578899999999 Q ss_pred ccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccccccc----- Q lcl|NC_015286. 71 FDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGA----- 145 (457) Q Consensus 71 ~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~----- 145 (457) +||+||+||||++|||||+|||||||||||||||||||+||.++.+ +||||+||+++|||......... T Consensus 81 ~~P~Li~l~RRa~p~LIa~DIwGVQPMTgPTGLIFAmRsrY~n~~g------~EAf~nEadt~fSg~~~~~~~~~~~~~~ 154 (468) T protein:vir:10 81 FDPVLISLVRRAMPNLMAYDVCGVQPMSGPTGLIFAMRSRYENQAG------EEALFNEPDTGFTGGYDASQGDYAVRTG 154 (468) T ss_pred cCchhhhhHHHHHhhhhhhhceeeecCCccceeeeEEEEEecCCCC------ccceeccccccccccccccccccccccc Confidence 9999999999999999999999999999999999999999998865 59999999999999765443322 Q ss_pred ccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhH Q lcl|NC_015286. 146 SDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDL 225 (457) Q Consensus 146 ~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDL 225 (457) ....+...+++++..+.... ..++++.||+|+.+|+||++ +++|+||+|+||||+|||||||||||||||||||| T Consensus 155 ~~~~~~~~g~~~~~~~~a~~---~~~~~g~gMsTa~aE~lG~~--~~~f~EMaFsIeK~tVtAKSRaLKAeYTiELAQDL 229 (468) T protein:vir:10 155 AGVGGDSEGNNPALLNDAAP---GTYEVGSKMPREDLERMGEA--NRLFREMSFSIEKTSVTAQSRALKAEYTLELAQDL 229 (468) T ss_pred cccccCCCCCcccccccccc---cccccccccchHHHhhcCCC--CcccceeeeEEEEEEEeeeccceeccccHHHHHHH Confidence 22233444555555444433 44678999999999999964 35799999999999999999999999999999999 Q ss_pred HHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|NC_015286. 226 KAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIG 305 (457) Q Consensus 226 kAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~ 305 (457) |||||||||+||+||||||||+||||||||+||+||+|||++|++++|||||+++++|||++|+||+|+|||+||||+|+ T Consensus 230 KAiHGLDAEtELaNILStEImlEINReii~~l~~va~~~k~~g~~~~Gv~d~~~~~~~rw~~e~~k~L~~~i~~ean~i~ 309 (468) T protein:vir:10 230 KAIHGLDAEQELANILSSEVLAEINREVVRRVYTVAKKGAQNNVANAGIFDLDVDSNGRWSVEKFKGLLFQVERDANAIA 309 (468) T ss_pred HHhcCCChhHHHHHHHHHHHHHHhcHHHHHhHhhhhhheecccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HhcccCCccEEEEchhHHHHHhhCCcceeccccccccccc--ccccCCceEEEEecCceEEEEecccccccccceEEEEE Q lcl|NC_015286. 306 QQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALT--GVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGY 383 (457) Q Consensus 306 ~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~--~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~ 383 (457) |||+||+|||||||+|||++|++||||+++|+++++..++ ++|+++.+|+|+|+|||+||||||+.+|+++|||+||| T Consensus 310 ~~T~rg~gn~ii~S~~Va~~L~~sG~l~~~~~~~~~~~~~~~~~D~tg~~~~G~l~~r~~vy~D~Ya~~~s~~dY~~vG~ 389 (468) T protein:vir:10 310 QETRRGKGNFLICSADVASALAMAGVLDYSSGLNGAGGPSIGEVDDTGNLAVGTINGRIKVFVDPYAANLSDKHYYVIGY 389 (468) T ss_pred HhhccccccEEEechhHHHHHhhcCcceecccccccccccccccccCcceEEEEecCceEEEEccccccCCccceEEEEE Confidence 9999999999999999999999999999999999999875 88999999999999999999999999999999999999 Q ss_pred ecCCCccceeEEccccccccccccCCccccceeeeeeeeeeeeccccccc--cCcc---cccccccchheeeeeeeecC Q lcl|NC_015286. 384 KGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGMVSNPFAQGL--TQGS---GALTANTNRYYRRVQVANLM 457 (457) Q Consensus 384 KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l~~nP~~~~~--~~~~---~~~~~~~n~~~~r~~~~~l~ 457 (457) ||++|+|+|||||||||+++++++||+||||++||||||||++|||+... +|+. ..+.+++|+||||++|+||| T Consensus 390 KG~~~~d~glfyaPYv~l~~~~~~dp~sfqP~~g~~tRY~l~~NP~~~~~~~~~g~~~~~~~~~~~N~y~r~~~v~~l~ 468 (468) T protein:vir:10 390 KGTSPYDAGLFYCPYVPLQMVRSIDPNTFQPKIGFKTRYGMVSNPFVTTNGLYNGTPDGEALTPNANMYYRRVQVTNLM 468 (468) T ss_pred ecCcceeceeeeccccccccccccCCCcccceeeeeeeeceeecccceeccccCCCcccccccccccceeeeEEEeccC Confidence 99999999999999999999999999999999999999999999998533 2332 34667899999999999999 No 5 >protein:vir:106286 Length: 534 # NCBI annotation: gp23 major head protein # Family: family:all:364 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944113;genbank:gi:38640157;genbank:GeneID:2658034 Probab=100.00 E-value=2.5e-222 Score=1235.48 Aligned_cols=449 Identities=41% Similarity=0.708 Sum_probs=398.1 Q ss_pred CchHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHH----------------------HHhhhh--hhcc Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEA----------------------SVLNET--LQTT 56 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~----------------------~~~~e~--~~~~ 56 (457) |++|+|+|||+|||||||+|||.+.+||+|+++|||||||||+|++ +.|.|+ .++| T Consensus 1 ~~~~~l~~kw~p~l~~~~~~~i~~~~~~~~~a~l~enq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ea~~~~~~ 80 (534) T protein:vir:10 1 MSKKSLLKKWQPLVESEGMPAIASMKRKDIVARIFENQDEDIAHNEGGVYTDQVVVNSMVDVKGRIEEARLAEANIGGDH 80 (534) T ss_pred CchhHHHHHhHHhhcCCccccccchhhhhhhhhhhhhHHHHHhhhcccccchhhhhhhhhccccchhhcccccccccccc Confidence 9999999999999999999999999999999999999999999985 224454 4899 Q ss_pred ccc----cccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc--c Q lcl|NC_015286. 57 GYT----GASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE--P 130 (457) Q Consensus 57 g~~----~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE--a 130 (457) ||+ +||++|++|+++||+||+||||++|||||+|||||||||||||||||||+||+++.+. .+..||||+| + T Consensus 81 g~~~~~ia~s~~s~~v~~~~P~Li~lvRra~p~LIa~DIwGVQPMTgPTGLIFAMRsrY~n~~~~--~s~~EAf~ne~~a 158 (534) T protein:vir:10 81 GYDATKIASGETSGSITNVGPAVMGLVRRAIPQLIAFDICGVQPMTSSTGQVFTLRAIYGGNSQD--ANAREAFHPTYGP 158 (534) T ss_pred ccccccccccccccccccccchhhhHHHHHHHhhhhhhhheeccCCchhhhheeeeeeecCCCCC--ccccccccccccc Confidence 999 6999999999999999999999999999999999999999999999999999987643 3567999999 9 Q ss_pred ccccccccccccccccc-----------------cccccccccccccc------c-------------cccccccccccc Q lcl|NC_015286. 131 NAGFSGGPGAYDPGASD-----------------ATNDAEGTNPALLN------D-------------SPAGTYEQTADA 174 (457) Q Consensus 131 ~t~fSG~~~~~~~~~~~-----------------~~~~~~gt~~~~~~------~-------------~~~gt~~~~~~~ 174 (457) |+.|||..+........ ..+...++.+.... . ........++++ T Consensus 159 dt~fSG~~~a~~~~~~~~~~a~~~g~~~~~~~~~~t~~~~Gt~~~~~~~~~~v~~~~~~~~~ag~~~~~~~~~~~~y~~~ 238 (534) T protein:vir:10 159 DADFSGRGAAQDIAVFVRGTAVASGAFAKLHIEAATGVQAGTKTVQFIKDYAVDALPADQTEAGLAYKWLLANGYAVETS 238 (534) T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCccccccccccccccccceecc Confidence 99999976543211100 00111122111100 0 001123456789 Q ss_pred cccchhhhhccCC--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHH Q lcl|NC_015286. 175 TGMTTATAEALDD--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINRE 252 (457) Q Consensus 175 ~Gm~Ta~aEaLg~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINRe 252 (457) .||+|+.+|+|+. ++++++|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+||||| T Consensus 239 ~gm~Ta~AE~lg~~ggs~~~~f~EMsFsIdKvtVtAKSRaLKAEYTiELAQDLKAIHGLDAEtELsNILSTEImlEINRe 318 (534) T protein:vir:10 239 SAMATAFAELQQGFNGSADNEWNEMSFRIDKQVVEAKSRQLKAQYSIEMAQDLRAVHGLDADSELSSILANEIMHEINRE 318 (534) T ss_pred cccchhhHhhhccCCCCcccchhhcceEEEEEEEeeeccceeccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHH Confidence 9999999999973 46678999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHhhhhheeeeeecccc----ccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHH Q lcl|NC_015286. 253 VVRTIYTNAVKGAQNNT----ATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASA 325 (457) Q Consensus 253 Ii~~l~tvA~rgk~~~v----~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~ 325 (457) |||+||++|+|||+.|+ +++|+|||+++.| +||++|+||+|++||++|+|+|+|+|+||+|||||||+|||++ T Consensus 319 ii~~l~~~a~~~k~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~L~~~i~~~an~i~~~T~rg~~n~~v~S~~Va~~ 398 (534) T protein:vir:10 319 MVLWINATAKVGKTGWTNMHGGKAGVFDFQDTKDIRGARWAGESYKALVVQIDKEANEIARQTGRGQGNFIICSRNVAAA 398 (534) T ss_pred HHHHHhhhhheeecccccccccccceeeeeccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccEEEEchhHHHH Confidence 99999999999999986 5689999999998 9999999999999999999999999999999999999999999 Q ss_pred HhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEcccccccccc Q lcl|NC_015286. 326 LGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVR 405 (457) Q Consensus 326 L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~ 405 (457) |+|+|||++.|++++... .++|+++.+|+|+|+|||+||||+|++ +|||+|||||++|+|+||||||||||++++ T Consensus 399 L~~~g~l~~~~~~~~~~~-~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfyaPYv~l~~~~ 473 (534) T protein:vir:10 399 LGHTDMLMTPAVMGANTT-MNTDTTSSLFAGVLAGKYRVYIDQYAV----EDYFTVGYKGASEMDAGLYYCPYVALTPLR 473 (534) T ss_pred Hhhccchhcccccccccc-ccccCCCceEEEEecCceEEEecCCCC----cceEEEEEeCCcccccceeecccccccccc Confidence 999999999998876554 788999999999999999999999976 799999999999999999999999999999 Q ss_pred ccCCccccceeeeeeeeeeeeccccccccCcc-ccccc---------ccchheeeeeeeec Q lcl|NC_015286. 406 AINPDTFQPKIGFKTRYGMVSNPFAQGLTQGS-GALTA---------NTNRYYRRVQVANL 456 (457) Q Consensus 406 ~~Dp~s~qP~~g~~tRY~l~~nP~~~~~~~~~-~~~~~---------~~n~~~~r~~~~~l 456 (457) ++||+||||+|||||||||++|||+++.++++ .++++ |+|.||||++|+|| T Consensus 474 ~~dp~sfqP~~g~~tRY~l~~NP~~~~~~~~~~~~i~~g~~~~~~~ag~n~~~~~~~Vk~l 534 (534) T protein:vir:10 474 GTDPKNFQPVLGFKTRYGVKLHPMADATQNKGFAKISNGMPQHTNMFGKNAFFRRVLVAGV 534 (534) T ss_pred ccCCccccceeeeeeeeceeecCcccccCCccccccccCCcchhhhcccccceeeeeeecC Confidence 99999999999999999999999999999988 45554 55679999999999 No 6 >protein:vir:101039 Length: 529 # NCBI annotation: major capsid protein # Family: family:all:364 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932516;genbank:gi:37651642;genbank:GeneID:2610532 Probab=100.00 E-value=2.1e-219 Score=1219.49 Aligned_cols=448 Identities=41% Similarity=0.694 Sum_probs=395.3 Q ss_pred CchHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHH------------hhhhh--hccccc----ccc Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASV------------LNETL--QTTGYT----GAS 62 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~------------~~e~~--~~~g~~----~~s 62 (457) |++|+|+|||+|||||||+|||++.+||+|+++|||||||+++|++.+ |.|+. ++|||+ +|| T Consensus 3 ~~~~~l~~kw~p~l~~~~~~~i~~~~~~~~~a~l~enq~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~i~es 82 (529) T protein:vir:10 3 LKNKEILNKWTPLLEGEGLPEIAGKNKQALVAQILEAQEKDSKSDPVYRDDKLIEAFGQSLMEAEVAGDHGYDPTNIAAG 82 (529) T ss_pred ccHHHHHHHhHHHhcCCccchhccchhhhhhhhhhhhhHHHHhhccccchhhhhhhhhcccchhhccccccccccccccc Confidence 889999999999999999999999999999999999999999999865 44443 888887 599 Q ss_pred ccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcc------------------------ Q lcl|NC_015286. 63 TATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPA------------------------ 118 (457) Q Consensus 63 t~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~------------------------ 118 (457) ++|++|++|||+||+||||++|||||+|||||||||||||||||||+||+++.... T Consensus 83 t~t~~v~~~~P~Li~lvRra~p~LIa~DIwGVQPMTgPTGLIFAMRsrY~~~~~~~~~~eaf~~~y~Pda~~sga~~~ga 162 (529) T protein:vir:10 83 QSSGAITNIGPAVIGMVRRAIPSLIAFDIAGVQPMTGPTGQVFALRSVYGKDPLAAGAKEAFHPMYAPDAWHSSLATKGA 162 (529) T ss_pred cccccccccCchhhhhHHHHHhhhhhheeeeeecCCchhhhhhhhheeecCCcccccccccccccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999998765321 Q ss_pred -------------------cCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccch Q lcl|NC_015286. 119 -------------------ASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTT 179 (457) Q Consensus 119 -------------------~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~T 179 (457) .....|+||+|+++.||+...+.....+....... ..............++.+.||+| T Consensus 163 ~~~~~~~~~~~~t~~~~~a~~~g~ea~f~ea~t~fs~~~~g~~~~~g~~~~~~~---~~~~~~~~~a~~~~~~~~~Gm~T 239 (529) T protein:vir:10 163 TTTTDGTPFAKLTAGQAIAEGDIVGHFFYESGTAFLQNVSGASVTVGTNETGEA---LDKLINAAIGEGKLAEIAEGMAT 239 (529) T ss_pred ccccCccccccccccccccccCcceeeeecccceecccccccccccCccccCcc---cccccccccccccccccccccch Confidence 01245889999999999865443322211111111 11112223334556788999999 Q ss_pred hhhhccCC--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhh Q lcl|NC_015286. 180 ATAEALDD--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTI 257 (457) Q Consensus 180 a~aEaLg~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l 257 (457) +.+|+|++ ++++++|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+||||||||+| T Consensus 240 a~aEaL~~~g~ss~~~f~EMaFsIeK~tVtAKSRaLKAEYTiELAQDLKAVHGLDAEtELsNILStEImlEINReii~~l 319 (529) T protein:vir:10 240 SIAELRQGFNGSNDNPWNEMSFRIDKQTVEAKSRQLKAQYSIELAQDLRAVHGMDADSELNGILANEVMLEINREVIDWI 319 (529) T ss_pred hhhhccccCCCcccccccceeeEEEEEEEeeeccceeccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHHHhH Confidence 99999974 4567899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hheeeeeecccc----ccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCC Q lcl|NC_015286. 258 YTNAVKGAQNNT----ATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAG 330 (457) Q Consensus 258 ~tvA~rgk~~~v----~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg 330 (457) |+||+|||+.|+ +.+|||||+++.+ +||++|+||+|++||++|+|+|+|+|+||+|||||||++||++|+|+| T Consensus 320 ~~~a~~~k~~g~~~~~~~~Gv~d~~~~~~~~~~~~~~e~~k~L~~~i~~~an~I~~~T~rg~~n~vi~S~~Va~~L~~~~ 399 (529) T protein:vir:10 320 NYTAQVGKSGWTKTDGSASGVFDFQDPIDVRGARWAGESYKALLIQIDKEANEIARQTGRGAGNFIIASRNVVSALALID 399 (529) T ss_pred hhhhhhhhcccccccccccceeecccCccccccchHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEchHHHHHHHhhh Confidence 999999999998 6689999998866 999999999999999999999999999999999999999999999999 Q ss_pred cceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCc Q lcl|NC_015286. 331 VLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPD 410 (457) Q Consensus 331 ~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~ 410 (457) ++++++. .+...+.++|+++..|+|+|+|||+||||+|++ +|||+|||||++++|+|||||||||+++++++||+ T Consensus 400 ~~~~~~~-~~~~sg~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfy~PYv~l~~~~~~dp~ 474 (529) T protein:vir:10 400 TNISPAA-QGMASGLNADTTKGVFAGILGGRYKVYIDQYAR----QDYFTMGYRGANNLDAGIYYCPYVALTPLRGSDPK 474 (529) T ss_pred hhccccc-cccccccccccCCceEEEEecCceEEEecCCCC----cceEEEEEeCCcccccceeeccccccccccccCCC Confidence 9876654 455555678999999999999999999999965 89999999999999999999999999999999999 Q ss_pred cccceeeeeeeeeeeeccccccccCc-cccccccc--------chheeeeeeeec Q lcl|NC_015286. 411 TFQPKIGFKTRYGMVSNPFAQGLTQG-SGALTANT--------NRYYRRVQVANL 456 (457) Q Consensus 411 s~qP~~g~~tRY~l~~nP~~~~~~~~-~~~~~~~~--------n~~~~r~~~~~l 456 (457) ||||+|||||||||++|||+++.+|. ++|+++|. |.||||+.|+|| T Consensus 475 sfqP~~g~~tRY~l~~NP~~~~~~~~~~~r~~~g~~~~~~ag~n~~~r~~~Vk~l 529 (529) T protein:vir:10 475 NFQPVMGFKTRYAIGVNPFAESRTQAPQGRITSGMPGVNSVGKNAYFRRVWVKGL 529 (529) T ss_pred cccceeeeeeeeceeecCccccccccccccccCCcchhhhcCccceeEEeeeccC Confidence 99999999999999999999999886 77888764 559999999999 No 7 >protein:vir:101811 Length: 529 # NCBI annotation: gp23 # Family: family:all:364 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238888;genbank:gi:66391963;genbank:GeneID:3416638 Probab=100.00 E-value=3.8e-219 Score=1218.07 Aligned_cols=448 Identities=42% Similarity=0.715 Sum_probs=393.8 Q ss_pred CchHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHH------------hhhhh--hccccc----ccc Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASV------------LNETL--QTTGYT----GAS 62 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~------------~~e~~--~~~g~~----~~s 62 (457) |.+|+|+|||+|||||||+|||++.+||+|+++|||||||+++|++.+ |.|+. ++|||+ ++| T Consensus 3 ~~~~~l~~kw~p~l~~~~~~~i~~~~~~~~~a~l~enq~~~~~~~~~~~~~~~~e~~~~~l~e~~~~~~~~~~~~~i~~s 82 (529) T protein:vir:10 3 LKNKEILNKWTPLLEGEGLPEIAGKNKQALVAQILEAQEKDSKSDPVYRDDKLIEAFGQSLMEAEVAGDHGYDPTNIAAG 82 (529) T ss_pred cchHHHHHHhhHhhcCCccchhccchhhhhhhhhhhhhHHHHhcccccchhhhhhhhhccchhhcccccccccccccccc Confidence 668899999999999999999999999999999999999999999866 55553 788877 589 Q ss_pred ccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCccc----------------------- Q lcl|NC_015286. 63 TATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAA----------------------- 119 (457) Q Consensus 63 t~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~----------------------- 119 (457) ++|++|++|||+||+||||++|||||+|||||||||||||||||||+||+++..... T Consensus 83 t~t~~v~~~~P~Li~lvRra~p~LIa~DIwGVQPMTgPTGLIFAMRsrY~~~~~~~~~~eaf~~~~~pda~~sga~~~ga 162 (529) T protein:vir:10 83 QSSGAITNIGPAVIGMVRRAIPSLIAFDIAGVQPMTGPTGQVFALRSVYGKDPLAAGAKEAFHPMYAPDAWHSSLATKGA 162 (529) T ss_pred cccccccccCchhhhhHHHHHHhhhhhhhheeccCCchhhhhheeeeeecCCcccccccccccccccccccccccccccc Confidence 999999999999999999999999999999999999999999999999987653210 Q ss_pred --------------------Ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch Q lcl|NC_015286. 120 --------------------SGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTT 179 (457) Q Consensus 120 --------------------~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~T 179 (457) ....|+||+|+++.||+...+.....+.... +................++.+.||+| T Consensus 163 ~t~~~~t~~~~~ta~~~~a~g~g~ea~f~ea~t~fs~~~~g~~~~~g~~~t---~~~~~~~~~~~~a~~~~~~~~~GmsT 239 (529) T protein:vir:10 163 TTTTDGTPFAKLTAGQAIAEGDIVGHFFYESGTAFLQNVSGASVTVGTNET---GEALDKLINAAIGEGKLAEIAEGMAT 239 (529) T ss_pred cccccccccccccccccccccccceeeecccCceeeccccccccccCcccc---Ccccccccccccccccccccccchhh Confidence 1134677777777777654332221111100 11111111222234456788999999 Q ss_pred hhhhccCC--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhh Q lcl|NC_015286. 180 ATAEALDD--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTI 257 (457) Q Consensus 180 a~aEaLg~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l 257 (457) +.+|+|++ ++++++|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+||||||||+| T Consensus 240 a~aEaL~~~ggss~~~f~EMaFsIeK~tVtAKSRaLKAEYTiELAQDLKAVHGLDAEtELsNILStEImlEINReii~~l 319 (529) T protein:vir:10 240 SIAELRQGFNGSNDNPWNEMSFRIDKQTVEAKSRQLKAQYSIELAQDLRAVHGMDADSELNGILANEVMLEINREVIDWI 319 (529) T ss_pred hhhhccccCCCcccccccceeeEEEEEEEeeeccceeccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHHHHH Confidence 99999974 4667899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hheeeeeecccccc----ceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCC Q lcl|NC_015286. 258 YTNAVKGAQNNTAT----AGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAG 330 (457) Q Consensus 258 ~tvA~rgk~~~v~~----~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg 330 (457) |++|+|||+.|+++ +|||||+++.+ +||++|+||+|++||++|+|+|+|+|+||+|||||||++||++|+|+| T Consensus 320 ~~~a~~~~~~~~~~~~~~~Gv~d~~~~~~~~~~~~~~e~~~~L~~~i~~~an~I~~~T~rg~~n~vi~S~~Va~~L~~~~ 399 (529) T protein:vir:10 320 NYTAQVGKSGWTKTDGSASGVFDFQDPIDVRGARWAGESYKALLIQIDKEANEIARQTGRGAGNFIIASRNVVSALALID 399 (529) T ss_pred hhhhhhhccccccccccccceeecccCccccccchHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEchHHHHHHHhhc Confidence 99999999999954 59999998866 999999999999999999999999999999999999999999999999 Q ss_pred cceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCc Q lcl|NC_015286. 331 VLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPD 410 (457) Q Consensus 331 ~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~ 410 (457) + .+.|+.++.+.+.++|+++..|+|+|+|||+||||+|++ +|||+|||||++++|+|||||||||++++|++||+ T Consensus 400 ~-~~~~~~~~~~sg~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfy~PYv~l~~~~~~dp~ 474 (529) T protein:vir:10 400 T-NISPAAQGMASGLNADTTKGVFAGILGGRYKVYIDQYAR----QDYFTMGYRGANNLDAGIYYCPYVALTPLRGFDPK 474 (529) T ss_pred c-cccccccccccccccccCCceEEEEecCceEEEecCCCC----cceEEEEEeCCcccccceeeccccccccccccCCC Confidence 6 688998888888889999999999999999999999965 89999999999999999999999999999999999 Q ss_pred cccceeeeeeeeeeeeccccccccCc-cccccccc--------chheeeeeeeec Q lcl|NC_015286. 411 TFQPKIGFKTRYGMVSNPFAQGLTQG-SGALTANT--------NRYYRRVQVANL 456 (457) Q Consensus 411 s~qP~~g~~tRY~l~~nP~~~~~~~~-~~~~~~~~--------n~~~~r~~~~~l 456 (457) ||||+|||||||||++|||+++.+|. ++|+++|. |.||||+.|+|| T Consensus 475 sfqP~~g~~tRY~l~~NP~~~~~~~~~~~r~~~g~~~~~~ag~n~~~r~~~Vk~l 529 (529) T protein:vir:10 475 NFQPVMGFKTRYAIGVNPFAESRTQAPQGRITSGMPGVNSVGKNAYFRRVWVKGL 529 (529) T ss_pred cccceeeeeeeeceeecCccccccccccccccCCcchhhhcCccceeEEeeeccC Confidence 99999999999999999999998886 77888754 559999999999 No 8 >protein:vir:6901 Length: 522 # NCBI annotation: gp23 major head protein # Family: family:all:364 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861877;genbank:gi:32453668;genbank:GeneID:1494303 Probab=100.00 E-value=2e-218 Score=1214.08 Aligned_cols=448 Identities=42% Similarity=0.692 Sum_probs=390.3 Q ss_pred Cc----hHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHHh------------hhhh--hccccc--- Q lcl|NC_015286. 1 MS----LQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVL------------NETL--QTTGYT--- 59 (457) Q Consensus 1 ~~----~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~------------~e~~--~~~g~~--- 59 (457) || +|+|+|||+|||||||+|+|.+. ||+|+++|||||||+|+|++.++ .|+. |+|||+ T Consensus 1 ~~~~~~~e~l~~kw~p~l~~~~~~~~~~~-~~~~~a~l~enq~~~~~~~~~~~~~~~~~~~~~~l~ea~~~~~~~~~~~~ 79 (522) T protein:vir:69 1 MTTIKTKAQLVDKWKELLEGEGLPEIANS-KQAIIAKIFENQEKDFEVSPEYKDEKIAQAFGSFLTEAEIGGDHGYNAQN 79 (522) T ss_pred CCccchHHHHHHhhHHHhcCCCCCccccc-hhhhhhhhhhhhhHHhhcccccchhHHHHhhhhhhhhhccccccCCCccc Confidence 55 78999999999999999999986 88999999999999999998554 4443 899987 Q ss_pred -cccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccc--cccccccccc Q lcl|NC_015286. 60 -GASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAF--FNEPNAGFSG 136 (457) Q Consensus 60 -~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAl--fnEa~t~fSG 136 (457) +||++|++|++|||+||+|+||++|||||+||||||||||||||||||||||+++.... +.+|+| |+|+|+.||| T Consensus 80 i~es~~t~~v~~~~P~li~lvrRa~p~LIa~DIwGVQPMTgPTGLIFAMRsrY~~q~~~~--~~~eaf~~~neadt~fSG 157 (522) T protein:vir:69 80 IAAGQTSGAVTQIGPAVMGMVRRAIPNLIAFDICGVQPMNSPTGQVFALRAVYGKDPIAA--GAKEAFHPMYAPDAMFSG 157 (522) T ss_pred ccccccccccccccchHHHHHHHHHhhhhhhhceeeccCCchhhhheeeeeeccCCcccC--cccccccccccccccccc Confidence 59999999999999999999999999999999999999999999999999999887543 344555 6999999999 Q ss_pred cccccccccccc----------------------------cccccccccccccc---cccccccccccccccchhhhhcc Q lcl|NC_015286. 137 GPGAYDPGASDA----------------------------TNDAEGTNPALLND---SPAGTYEQTADATGMTTATAEAL 185 (457) Q Consensus 137 ~~~~~~~~~~~~----------------------------~~~~~gt~~~~~~~---~~~gt~~~~~~~~Gm~Ta~aEaL 185 (457) ..+......... .....++++..++. +.......++++.||+|+.+|++ T Consensus 158 ~~~~t~~~~~~~~~~t~~G~~~~~~~~~~gt~~~~~~a~~t~~~t~~~~~~~~~ai~s~~~~~~~y~~g~GmsTa~aEal 237 (522) T protein:vir:69 158 QGAAKKFPALAASTQTKVGDIYTHFFQETGTVYLQASAQVTISSSADDAAKLDAEIIKQMEAGALVEIAEGMATSIAELQ 237 (522) T ss_pred ccccccccccccccccccccccccccccccceeeecccCCcCCCCCcccccccchhccccccccceeeccccchhhhhhc Confidence 765433211100 00001111111110 01122345778999999999997 Q ss_pred CC--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeee Q lcl|NC_015286. 186 DD--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVK 263 (457) Q Consensus 186 g~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~r 263 (457) ++ ++++.+|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+|||||||++|+..|+. T Consensus 238 ~~lggss~~~f~EMaFsIeKvTVtAKSRaLKAEYTiELAQDLKAIHGLDAEtELaNILSTEImlEINReii~~i~~sa~~ 317 (522) T protein:vir:69 238 EGFNGSTDNPWNEMGFRIDKQVIEAKSRQLKAAYSIELAQDLRAVHGMDADAELSGILATEIMLEINREVVDWINYSAQV 317 (522) T ss_pred ccCCCCcccchhhhcceEeeEEEeeecccccccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhee Confidence 53 4567899999999999999999999999999999999999999999999999999999999999999998888888 Q ss_pred eecccc----ccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecc Q lcl|NC_015286. 264 GAQNNT----ATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSP 336 (457) Q Consensus 264 gk~~~v----~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~ 336 (457) ++.+++ +.+|||||+++.| |||++|+||+|+|||+||||+|+|+|+||+|||||||+|||++|+|+|++++.+ T Consensus 318 ~~~g~t~~~~~~~Gv~Dl~~~~~~~~~rw~~e~~k~L~~~i~~~an~i~~~T~rg~~n~~i~S~~Va~~L~~~~~~~~~~ 397 (522) T protein:vir:69 318 GKSGMTNIVGSKAGVFDFQDPIDIRGARWAGESFKALLFQIDKEAVEIARQTGRGEGNFIIASRNVVNVLASVDTGISYA 397 (522) T ss_pred eccccccccccccceeecccccccccchhHHHHHHHHHHHHHHHHHHHHHhcccccccEEEEchhHHHHHhhcccccccc Confidence 877766 6799999999998 999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCcccccee Q lcl|NC_015286. 337 ALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKI 416 (457) Q Consensus 337 ~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~ 416 (457) +++...++ ++|+++++|+|+|+|||+||||+|++ +|||+|||||++|+|+||||||||||++++++||+||||+| T Consensus 398 ~~~~~~g~-~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfyaPYv~l~~~~~~dp~sfqP~~ 472 (522) T protein:vir:69 398 AQGLASGF-NTDTTKSVFAGVLGGKYRVYIDQYAK----QDYFTVGYKGANEMDAGIYYAPYVALTPLRGSDPKNFQPVM 472 (522) T ss_pred cccccccc-cccCCCceEEEEecCceEEEecCCCC----cceEEEEEeCCcccccceeeccccccccccccCCcccccee Confidence 88766664 78999999999999999999999965 89999999999999999999999999999999999999999 Q ss_pred eeeeeeeeeeccccccccC-ccccccc---------ccchheeeeeeeec Q lcl|NC_015286. 417 GFKTRYGMVSNPFAQGLTQ-GSGALTA---------NTNRYYRRVQVANL 456 (457) Q Consensus 417 g~~tRY~l~~nP~~~~~~~-~~~~~~~---------~~n~~~~r~~~~~l 456 (457) ||||||||++|||++..+| +++||++ |+|+|||||+|+|| T Consensus 473 g~~tRY~l~vNP~~~~~~~~~~~ri~~g~p~~~~~~~~n~y~r~v~v~~~ 522 (522) T protein:vir:69 473 GFKTRYGIGVNPFAESSLQAPGARIQSGMPSILNSLGKNAYFRRVYVKGI 522 (522) T ss_pred eeeeeeceeecCcccccCCcccceeecccchhhcccCCcceeeEEEeecC Confidence 9999999999999997754 4677665 56889999999999 No 9 >protein:vir:103463 Length: 521 # NCBI annotation: major head subunit precursor # Family: family:all:364 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803115;genbank:gi:116326395;genbank:GeneID:4405492 Probab=100.00 E-value=8.7e-217 Score=1205.11 Aligned_cols=448 Identities=42% Similarity=0.703 Sum_probs=391.1 Q ss_pred Cc---hHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHH------------HHhhhhh--hccccc---- Q lcl|NC_015286. 1 MS---LQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEA------------SVLNETL--QTTGYT---- 59 (457) Q Consensus 1 ~~---~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~------------~~~~e~~--~~~g~~---- 59 (457) |+ +|+|+|||+|||||||+|+|.+. ||+|+++|||||||+++|++ ++|.|+. ++||++ T Consensus 1 ~~~~~~~~l~~kw~p~l~~~~~~~i~~~-~~~~~a~~~enq~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~i 79 (521) T protein:vir:10 1 MTIKTKAELLNKWKPLLEGEGLPEIANS-KQAIIAKIFENQEKDFQTAPEYKDEKIAQAFGSFLTEAEIGGDHGYNATNI 79 (521) T ss_pred CCcchhHHHHHhhhhhhccCCCCccccc-hhhhhhhhhhhhhhhhhhccccchhHHHHHHhhhhhhhcccCccccccccc Confidence 43 78899999999999999999986 88999999999999999998 5555654 777765 Q ss_pred cccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccc--cccccccccc Q lcl|NC_015286. 60 GASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFF--NEPNAGFSGG 137 (457) Q Consensus 60 ~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlf--nEa~t~fSG~ 137 (457) +||++|++|+++||+||+||||++|||||+||||||||||||||||||||||+++.... +..|+|+ +++|+.|||. T Consensus 80 ~es~~t~~v~~~~P~Li~lvRra~p~LIa~DIwGVQPMTgPTGLIFAMRsrY~~q~~~~--~g~eaf~~~~~ada~fSG~ 157 (521) T protein:vir:10 80 AAGQTSGAVTQIGPAVMGMVRRAIPNLIAFDICGVQPMNSPTGQVFALRAVYGKDPIAA--GAKEAFHPMYGPDAMFSGQ 157 (521) T ss_pred cccccccccccCCchhhhHHHHHHhhhhhhhceeeccCCchhhhheeeeeeccCCcccc--ccccccchhcccccccccc Confidence 68999999999999999999999999999999999999999999999999999887543 3457775 4599999998 Q ss_pred cccccccccccc-----cc-----------------------ccccccccccc---cccccccccccccccchhhhhccC Q lcl|NC_015286. 138 PGAYDPGASDAT-----ND-----------------------AEGTNPALLND---SPAGTYEQTADATGMTTATAEALD 186 (457) Q Consensus 138 ~~~~~~~~~~~~-----~~-----------------------~~gt~~~~~~~---~~~gt~~~~~~~~Gm~Ta~aEaLg 186 (457) .+.......... ++ ..++++...+. ........++++.||+|+.+|+|+ T Consensus 158 ~~at~~s~~~~~~~~~~Gd~~~~~~~~~g~~~~~~~~~~t~~~t~~d~~~~~~~~~~~~~~~~~y~~~~GmsTa~aEal~ 237 (521) T protein:vir:10 158 GAAKKFAALAASTQTTVGDIYTHFFQDTGTVYLQASAQVTISSTADDAAKLDAEIKKQMEAGALVEIAEGMATSIAELQE 237 (521) T ss_pred ccccccccccccccccccccccccccccccceecccccccCCCcccccccccccccccccccceeecccccchhhHhhhc Confidence 765322111100 00 00000000000 011223457789999999999996 Q ss_pred C--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeee Q lcl|NC_015286. 187 D--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKG 264 (457) Q Consensus 187 ~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rg 264 (457) + ++++.+|+||+|+||||+|+|||||||||||||||||||||||||||+||+||||||||+|||||||++|+..|+.+ T Consensus 238 ~~g~ss~~~f~EMaFsIeKvtVtAKSRaLKAEYTiELAQDLKAVHGLDAEtELaNILSTEImlEINReii~~i~~sa~~~ 317 (521) T protein:vir:10 238 SFNGSTDNPWNEMGFRIDKQVIEAKSRQLKAAYSIELAQDLRAVHGMDADAELSGILATEIMLEINREVVDWINYSAQVG 317 (521) T ss_pred cCCCCccccccceeeEEEEEEEeeeccceeccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHhhhhhheeeee Confidence 3 46678999999999999999999999999999999999999999999999999999999999999999988888888 Q ss_pred ecccc----ccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccc Q lcl|NC_015286. 265 AQNNT----ATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPA 337 (457) Q Consensus 265 k~~~v----~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~ 337 (457) +.+++ +.+|+|||+++.| +||++|+||+|+|||+||||+|+|+|+||+|||||||+|||++|+|+|++++.++ T Consensus 318 ~~g~t~~~~~~~G~~d~~~~~d~~~~~~~~e~~k~L~~~i~~~an~i~~~T~r~~~n~~i~S~~Va~~L~~~~~~~~~~~ 397 (521) T protein:vir:10 318 KSGMTLTPGSKAGVFDFQDPIDIRGARWAGESFKALLFQIDKEAVEIARQTGRGEGNFIIASRNVVNVLASVDTGISYAA 397 (521) T ss_pred eeeeeeccCccccceecccccccccchHHHHHHHHHHHHHHHHHHHHHHhcccccceEEEEchHHHHHHhhccccccccc Confidence 77777 5699999999988 9999999999999999999999999999999999999999999999999999988 Q ss_pred ccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCccccceee Q lcl|NC_015286. 338 LNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIG 417 (457) Q Consensus 338 ~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g 417 (457) ++...+ .++|+++++|+|+|+|||+||||+|++ +|||+|||||++|+|+||||||||||++++++||+||||+|| T Consensus 398 ~~~~~g-~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfyaPYv~l~~~~~~dp~sfqP~~g 472 (521) T protein:vir:10 398 QGLATG-FNTDTTKSVFAGVLGGKYRVYIDQYAK----QDYFTVGYKGPNEMDAGIYYAPYVALTPLRGSDPKNFQPVMG 472 (521) T ss_pred cccccc-ccccCCCceEEEEecCceEEEecCCCC----cceEEEEEeCCcccccceeeccccccccccccCCccccceee Confidence 866555 478999999999999999999999965 899999999999999999999999999999999999999999 Q ss_pred eeeeeeeeeccccccccCccccccccc----------chheeeeeeeec Q lcl|NC_015286. 418 FKTRYGMVSNPFAQGLTQGSGALTANT----------NRYYRRVQVANL 456 (457) Q Consensus 418 ~~tRY~l~~nP~~~~~~~~~~~~~~~~----------n~~~~r~~~~~l 456 (457) |||||||++|||+++.+|+++|+|+++ |.|||||+|++| T Consensus 473 ~~tRY~l~~NP~~~~~~~~~~~~i~~~~~~~~a~~~~~sy~r~v~v~~l 521 (521) T protein:vir:10 473 FKTRYGIGINPFAESAAQAPASRIQSGMPSILNSLGKNAYFRRVYVKGI 521 (521) T ss_pred eeeeeceeecCcccccCCccceeecccchhhhccccccceeeeeeecCC Confidence 999999999999999999999998865 459999999999 No 10 >protein:vir:7214 Length: 521 # NCBI annotation: gp23 major head protein # Family: family:all:364 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049787;genbank:gi:9632597;genbank:GeneID:1258751 Probab=100.00 E-value=1.7e-216 Score=1203.47 Aligned_cols=448 Identities=42% Similarity=0.696 Sum_probs=389.7 Q ss_pred Cc---hHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHH------------HHhhhhh--hccccc---- Q lcl|NC_015286. 1 MS---LQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEA------------SVLNETL--QTTGYT---- 59 (457) Q Consensus 1 ~~---~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~------------~~~~e~~--~~~g~~---- 59 (457) |+ +|+|+|||+|||||||+|+|.+. ||+|+++|||||||+++|++ +.|.|+. ++||++ T Consensus 1 ~~~~~~~~l~~kw~p~l~~~~~~~i~~~-~~~~~a~~~enq~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~i 79 (521) T protein:vir:72 1 MTIKTKAELLNKWKPLLEGEGLPEIANS-KQAIIAKIFENQEKDFQTAPEYKDEKIAQAFGSFLTEAEIGGDHGYNATNI 79 (521) T ss_pred CCcchhHHHHHhhhhhhccCCCCccccc-hhhhhhhhhhhhhhhhhhcccccchHHHHHHhhhhhhhcccCccccCcccc Confidence 43 78899999999999999999986 88999999999999999998 4455552 667655 Q ss_pred cccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc--cccccccc Q lcl|NC_015286. 60 GASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE--PNAGFSGG 137 (457) Q Consensus 60 ~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE--a~t~fSG~ 137 (457) +||++|++|+++||+||+||||++|||||+||||||||||||||||||||||+++... ..+.|+||+| +++.|||. T Consensus 80 aes~~t~~v~~~~P~Li~lvRra~p~LIa~DIwGVQPMTgPTGLIFAMRsrY~~q~~~--~~g~ea~~~e~~~da~fSG~ 157 (521) T protein:vir:72 80 AAGQTSGAVTQIGPAVMGMVRRAIPNLIAFDICGVQPMNSPTGQVFALRAVYGKDPVA--AGAKEAFHPMYGPDAMFSGQ 157 (521) T ss_pred cccccccccccCCchhhhHHHHHHhhhhhhhceeeccCCchhhhheeeeeeecCCCCC--cccccccchhcccccccccc Confidence 6999999999999999999999999999999999999999999999999999987654 4567999877 68899998 Q ss_pred cccccccccccc-----ccc-------ccc-----------ccccccc--------cccccccccccccccchhhhhccC Q lcl|NC_015286. 138 PGAYDPGASDAT-----NDA-------EGT-----------NPALLND--------SPAGTYEQTADATGMTTATAEALD 186 (457) Q Consensus 138 ~~~~~~~~~~~~-----~~~-------~gt-----------~~~~~~~--------~~~gt~~~~~~~~Gm~Ta~aEaLg 186 (457) .+.......... ++. .++ .+...+. ........++++.||+|+.+|+++ T Consensus 158 ~~~~~~~~~~~~~~~a~Gd~~~~~~~~~gt~~~~~~~~~~~~~g~t~~~~t~~~v~~~~~a~~~y~~g~gm~Ta~aEal~ 237 (521) T protein:vir:72 158 GAAKKFPALAASTQTTVGDIYTHFFQETGTVYLQASVQVTIDAGATDAAKLDAEIKKQMEAGALVEIAEGMATSIAELQE 237 (521) T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCCCccccccccccccccCceeeeecccchhhhhhhc Confidence 664322111100 000 000 0000000 011123457789999999999975 Q ss_pred C--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeee Q lcl|NC_015286. 187 D--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKG 264 (457) Q Consensus 187 ~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rg 264 (457) . ++++..|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+|||||||++|+..|+.+ T Consensus 238 ~~g~ss~~~f~EMaFsIeK~tVtAKSRaLKAEYTiELAQDLKAVHGLDAEtELaNILSTEImlEINReii~~i~~sa~~g 317 (521) T protein:vir:72 238 GFNGSTDNPWNEMGFRIDKQVIEAKSRQLKAAYSIELAQDLRAVHGMDADAELSGILATEIMLEINREVVDWINYSAQVG 317 (521) T ss_pred ccCCcccccccceeeEEEEEEEeeeccceeccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHhhhhhheeeee Confidence 3 45677999999999999999999999999999999999999999999999999999999999999999888777887 Q ss_pred ecccc----ccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccc Q lcl|NC_015286. 265 AQNNT----ATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPA 337 (457) Q Consensus 265 k~~~v----~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~ 337 (457) +.+++ +.+|+|||+++.| +||++|+||+|+|||+||||+|+|+|+||+|||||||+|||++|+|+|.+++.++ T Consensus 318 ~~g~t~~~~~~~G~~d~~~~~d~~~~~~~~e~~k~L~~~i~~~an~i~~~T~r~~~n~~i~S~~Va~~L~~~~~~~~~~~ 397 (521) T protein:vir:72 318 KSGMTLTPGSKAGVFDFQDPIDIRGARWAGESFKALLFQIDKEAVEIARQTGRGEGNFIIASRNVVNVLASVDTGISYAA 397 (521) T ss_pred eeeeeeccCccccceecccccccccchHHHHHHHHHHHHHHHHHHHHHHhcccccceEEEEchHHHHHHhhccccccccc Confidence 77777 5699999999988 9999999999999999999999999999999999999999999999999988888 Q ss_pred ccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCccccceee Q lcl|NC_015286. 338 LNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIG 417 (457) Q Consensus 338 ~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g 417 (457) ++.+.+ .++|+++++|+|+|+|||+||||+|++ +|||+|||||++|+|+||||||||||++++++||+||||+|| T Consensus 398 ~~~~~g-~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfyaPYv~l~~~~~~dp~sfqP~~g 472 (521) T protein:vir:72 398 QGLATG-FSTDTTKSVFAGVLGGKYRVYIDQYAK----QDYFTVGYKGPNEMDAGIYYAPYVALTPLRGSDPKNFQPVMG 472 (521) T ss_pred cccccc-ccccCCCceEEEEccCceEEEecCCCC----cceEEEEEeCCcccccceeeccccccccccccCCccccceee Confidence 765555 567999999999999999999999965 899999999999999999999999999999999999999999 Q ss_pred eeeeeeeeeccccccccCcccccccccc----------hheeeeeeeec Q lcl|NC_015286. 418 FKTRYGMVSNPFAQGLTQGSGALTANTN----------RYYRRVQVANL 456 (457) Q Consensus 418 ~~tRY~l~~nP~~~~~~~~~~~~~~~~n----------~~~~r~~~~~l 456 (457) |||||||++|||+++++|+++|+|+++| .|||||+|++| T Consensus 473 ~~tRY~l~~NP~~~~~~~~~a~~i~~~~~~~~a~~~~~sy~r~v~v~~l 521 (521) T protein:vir:72 473 FKTRYGIGINPFAESAAQAPASRIQSGMPSILNSLGKNAYFRRVYVKGI 521 (521) T ss_pred eeeeeceeecCcccccCcccceeecCcChhhhcCccccceeeeeeecCC Confidence 9999999999999999999999998654 49999999999 No 11 >protein:vir:5670 Length: 514 # NCBI annotation: gp23 # Family: family:all:364 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899609;genbank:gi:34419596;genbank:GeneID:2546039 Probab=100.00 E-value=2.6e-216 Score=1202.48 Aligned_cols=445 Identities=41% Similarity=0.703 Sum_probs=385.2 Q ss_pred HHHHHHhhHhhcccc--ccccccchhhhhhhhhccchHHHHHHHHHH------------hhhhh--hcccccc----ccc Q lcl|NC_015286. 4 QQLQEKWAPVLNHES--LPEIEDTHKRGVVAQLLENQEKAITEEASV------------LNETL--QTTGYTG----AST 63 (457) Q Consensus 4 ~~l~~~w~~~l~~~~--~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~------------~~e~~--~~~g~~~----~st 63 (457) -+|+|||+||||||| +|||++.|||+|+++||||||||++|++.+ |.|+. ++||+++ ||+ T Consensus 1 ~~l~~kw~p~l~~~~~~~~~i~~~~~~~~~~~l~enq~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~ia~s~ 80 (514) T protein:vir:56 1 MNLTEKWKDLLEAEGADMPEIATATKQKIMSKIFENQDRDINNDPMYRDPQLVEAFNAGLNEAVVNGDHGYDPANIAQGV 80 (514) T ss_pred CchhhhhhHHhcccccccccccchhhhhhhhhhhhhHHHHHhcCCcccchhhhhhhhccccccccccccccccccccccc Confidence 579999999999998 899999999999999999999999999865 55553 8899885 999 Q ss_pred cccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccc--cccccccccccccc Q lcl|NC_015286. 64 ATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFF--NEPNAGFSGGPGAY 141 (457) Q Consensus 64 ~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlf--nEa~t~fSG~~~~~ 141 (457) +|++|+++||+||+||||++|||||+|||||||||||||||||||++|+++... ..|||| ||+|+.|||..++. T Consensus 81 ~t~~v~~~~P~ll~lvRRa~~~LIa~DIwGVQPMTgPTGLIFAMRsrY~~~~~t----g~EAf~~~nEadt~fSG~~~~~ 156 (514) T protein:vir:56 81 TTGAVTNIGPTVMGMVRRAIPQLIAFDIAGVQPMTGPTSQVFTLRSVYGKDPLT----GAEAFHPTRQADASFSGQAAAS 156 (514) T ss_pred ccccccccchhHHHHHHHHHHhhhhhhhheeccCCchhhhheeeeeeecCCCcc----cccccccccccCcCcccccccc Confidence 999999999999999999999999999999999999999999999999977432 359999 99999999976543 Q ss_pred cccccccccccccccc------------c------------ccc--------ccccccccccccccccchhhhhccCC-- Q lcl|NC_015286. 142 DPGASDATNDAEGTNP------------A------------LLN--------DSPAGTYEQTADATGMTTATAEALDD-- 187 (457) Q Consensus 142 ~~~~~~~~~~~~gt~~------------~------------~~~--------~~~~gt~~~~~~~~Gm~Ta~aEaLg~-- 187 (457) ........+...+..+ . ... .........++.+.||+|+.+|++++ T Consensus 157 ~~~~~~~~~~~~~G~~~~~~~t~~~gd~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~~~~y~~~~Gm~Ta~aEal~~lg 236 (514) T protein:vir:56 157 TIADFPTTGAATDGTPYKAEVTTSGGDVSMRYFLALGAVTLAVAGQMTATEYTDGVAGGLLVEIDAGMATSQAELQENFN 236 (514) T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhhcccCC Confidence 3221111100000000 0 000 00011123466788999999999753 Q ss_pred CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhh---heeeee Q lcl|NC_015286. 188 SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIY---TNAVKG 264 (457) Q Consensus 188 ~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~---tvA~rg 264 (457) ++++++|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+|||||||++|+ +|+++| T Consensus 237 gs~~~~f~EMaFsIdK~tVtAKSRaLKAEYTiELAQDLKAVHGLDAEtELsNILSTEImlEINReii~~l~~~atv~~~~ 316 (514) T protein:vir:56 237 GSSNNEWNEMSFRIDKQVVEAKSRQLKAQYSIELAQDLRAVHGLDADAELSGILANEVMVELNREIVNLVNSQAQIGKSG 316 (514) T ss_pred CCcccccceeeeEEEEEEEeeeccceeccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHHHHHHhheeehhcc Confidence 56678999999999999999999999999999999999999999999999999999999999999988886 666888 Q ss_pred eccccccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccc Q lcl|NC_015286. 265 AQNNTATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGN 341 (457) Q Consensus 265 k~~~v~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~ 341 (457) |+++++++|+|||+++.| +||++|+||.|+|||++|||+|+|+|+||+|||||||+|||++|+|+|||++.+++... T Consensus 317 ~~~~~~~~G~~d~~~~~d~~~~~~~~e~~~~l~~~i~~~an~i~~~T~rg~gn~~i~S~~Va~~L~~sg~l~~~~~~g~~ 396 (514) T protein:vir:56 317 WTQGAGAAGVFDFSDAVDVKGARWAGEAYKALLIQIEKEANEIGRQTGRGNGNFIIASRNVVSALSMTDTLVGPAAQGMQ 396 (514) T ss_pred cccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhhcccccccEEEEchhHHHHHHhhhhhccccccCcc Confidence 899999999999998776 79999999999999999999999999999999999999999999999999988777766 Q ss_pred ccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeee Q lcl|NC_015286. 342 NALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTR 421 (457) Q Consensus 342 ~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tR 421 (457) .+..+.|+++.+|+|+|+|||+||||+|++ +|||+|||||++|+|+|||||||||+++++++||+||||+|||||| T Consensus 397 ~~~~~~d~~~~~~aG~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfyaPYv~l~~~~~~dp~sfqP~~g~~tR 472 (514) T protein:vir:56 397 DGSMNTDTNQTVFAGVLGGRFKVYIDQYAV----NDYFTVGFKGSTEMDAGVFYSPYVPLTPLRGSDSKNFQPVIGFKTR 472 (514) T ss_pred ccccccccCcceEEEEecCceEEEecCCCC----cceEEEEEecCcceecceeeccccccccccccCCccccceeeeeee Confidence 667889999999999999999999999966 7999999999999999999999999999999999999999999999 Q ss_pred eeeeeccccccccCc-------ccccccccchheeeeeeeec Q lcl|NC_015286. 422 YGMVSNPFAQGLTQG-------SGALTANTNRYYRRVQVANL 456 (457) Q Consensus 422 Y~l~~nP~~~~~~~~-------~~~~~~~~n~~~~r~~~~~l 456 (457) |||++|||++...+. +-....++|.||||++|+|| T Consensus 473 Y~l~~NPy~~~~~~~~~~~~~~~~~a~~~~n~y~r~v~v~~l 514 (514) T protein:vir:56 473 YGVQVNPFADPTASATKVGNGAPVAASMGKNAYFRRVFVKGL 514 (514) T ss_pred eceeeCCCCCccccccccCCcchhhhcccccceeeeEEEecC Confidence 999999998644322 11233467889999999999 No 12 >protein:vir:100603 Length: 529 # NCBI annotation: gp23 precursor of major head subunit # Family: family:all:364 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656387;genbank:gi:109290138;genbank:GeneID:4156581 Probab=100.00 E-value=8.5e-216 Score=1199.66 Aligned_cols=451 Identities=41% Similarity=0.679 Sum_probs=390.1 Q ss_pred CchHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHH------------hhhhh--hcccccc----cc Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASV------------LNETL--QTTGYTG----AS 62 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~------------~~e~~--~~~g~~~----~s 62 (457) |.+|+|+|||+|||||||+|||++.+||+|+++|||||||+|+|++.+ |.|+. ++||+++ +| T Consensus 3 ~~~~~l~~kw~p~l~~~~~~~i~~~~~~~~~a~l~enq~~~~~~~~~~~~~~~~e~~~~~l~e~~~~~~~~~~~~~ia~s 82 (529) T protein:vir:10 3 LKTKEILNKWTPLLEGEGLPEIAGKNKQALVAQILEAQEKDSKTDPVYRDDKLIEAFGQSLMEAEVAGDHGYDPTNIAAG 82 (529) T ss_pred cchHHHHHHhhHhhcCCccchhcchhhhhhhhhhhhhHHHHhhcccccchhhhhhhhhhccchhhccccccccccccccc Confidence 558999999999999999999999999999999999999999999866 55554 8888875 99 Q ss_pred ccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccccccccccc Q lcl|NC_015286. 63 TATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYD 142 (457) Q Consensus 63 t~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~ 142 (457) ++|++|+++||+||+||||++|||||+||||||||||||||||||||||+++.........+++|+|+|+.|||...... T Consensus 83 ~~t~~v~~~~P~Li~lvRra~p~LIa~DIwGVQPMTgPTGLIFAMRsrY~~~~~~~~g~eaf~~~~e~dt~~SG~~~~~~ 162 (529) T protein:vir:10 83 QSSGAITNIGPAVIGMVRRAIPSLIAFDIAGVQPMTGPTGQVFALRSVYGKDPLAAGAKEAFHPMYAPDAWHSGLAAKGA 162 (529) T ss_pred ccccccccccchhhhhHHHHHHhHHhhhhheeccCCchhhhhhhheeeecCCcCCCcccccccccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999887654444455668999999999765432 Q ss_pred ccccccc-----------------------------cccccc-cccc----------ccccccccccccccccccchhhh Q lcl|NC_015286. 143 PGASDAT-----------------------------NDAEGT-NPAL----------LNDSPAGTYEQTADATGMTTATA 182 (457) Q Consensus 143 ~~~~~~~-----------------------------~~~~gt-~~~~----------~~~~~~gt~~~~~~~~Gm~Ta~a 182 (457) ....... ....+. .++. ...........++++.||+|+.+ T Consensus 163 ~~~~~~~~~~~~t~~~a~~~~~~~~~~~nea~t~~s~~~tg~~~~~g~~~tg~~~~~~~~~~~a~~~~~~~~~gmsTa~a 242 (529) T protein:vir:10 163 TTSSDGTPFAALTAGQAVATGDIVYHFFYESGSAYLQNVTGGNVTVGTNETGAALDALVSAKIAAGELAEIAEGMATSIA 242 (529) T ss_pred cccccccccccccccceeeccccceeeecccccccccccccccccccccccCCccccccccccccccccccccccchhhh Confidence 1111000 000000 0000 00111122334778899999999 Q ss_pred hccCC--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhhe Q lcl|NC_015286. 183 EALDD--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTN 260 (457) Q Consensus 183 EaLg~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tv 260 (457) |+|++ +++++.|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+||||||||+|+.. T Consensus 243 Eal~~~g~ss~~~f~EMaFsIeK~tVtAKSRaLKAEYTiELAQDLKAvHGLDAEtELsNILStEImlEINReii~~i~~~ 322 (529) T protein:vir:10 243 ELRQGFNGTTDNPWNEMSFRIDKQTVEAKSRQLKAQYSIELAQDLRAVHGMDADSELNGILANEVMLEINREVIDWINYT 322 (529) T ss_pred hccccCCCCccccccceeeEEEEEEEeeeccceeccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHHHHhhhh Confidence 99963 5667899999999999999999999999999999999999999999999999999999999999999987777 Q ss_pred eeeeecccc----ccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcce Q lcl|NC_015286. 261 AVKGAQNNT----ATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLD 333 (457) Q Consensus 261 A~rgk~~~v----~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~ 333 (457) |+.++..++ +.+|||||+++.| +||++|+||+|++||++|+|+|+|+|+||+|||||||++||++|+|.|.++ T Consensus 323 a~~~~~g~~~~~~~~~gv~d~~~~~d~~~~~~~~e~~~~L~~~i~~~an~I~~~T~rg~~n~vi~S~~Va~~L~~~~~~~ 402 (529) T protein:vir:10 323 AQVGKSGWTQTVGSAAGVFDFQDPIDVRGARWAGESYKALLIQIDKEANEIARQTGRGAGNFIIASRNVVSALALVDAGI 402 (529) T ss_pred ceeeeeeeeccccccccceeccccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccceEEEEchHHHHHHhhhcccc Confidence 766665544 5789999998876 899999999999999999999999999999999999999999999999987 Q ss_pred ecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCcccc Q lcl|NC_015286. 334 YSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQ 413 (457) Q Consensus 334 ~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~q 413 (457) +.++.....+ .++|+++++|+|+|+|||+||||+|++ +|||+|||||++++|+||||||||||++++++||+||| T Consensus 403 ~~~~~~~~sg-~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfy~PYv~l~~~~~~dp~sfq 477 (529) T protein:vir:10 403 TPAAQGMASG-LNADTTKGVFAGVLGGRYKVYIDQYAR----QDYFTMGYRGANNLDAGIYYCPYVALTPLRGSDPKNFQ 477 (529) T ss_pred cccccccccc-ceeecCCceEEEEecCceEEEecCCCC----cceEEEEEeCCcccccceeeccccccccccccCCCccc Confidence 7777655444 558999999999999999999999965 89999999999999999999999999999999999999 Q ss_pred ceeeeeeeeeeeeccccccccCc-cccccccc--------chheeeeeeeec Q lcl|NC_015286. 414 PKIGFKTRYGMVSNPFAQGLTQG-SGALTANT--------NRYYRRVQVANL 456 (457) Q Consensus 414 P~~g~~tRY~l~~nP~~~~~~~~-~~~~~~~~--------n~~~~r~~~~~l 456 (457) |+|||||||||++|||++++++. ++|++++. |.||||+.|+|| T Consensus 478 P~~g~~tRY~l~~NP~~~~~~~~~~~r~~~g~~~~~~ag~n~~~r~~~Vk~l 529 (529) T protein:vir:10 478 PVMGFKTRYAIGVNPFAESRTQAPTSRISNGMPGAHSVGKNAYFRRVWVKGL 529 (529) T ss_pred ceeeeeeeeceeecCccccccccccccccCCcchhhhcCccceeeEeeeccC Confidence 99999999999999999999996 78888754 569999999999 No 13 >protein:vir:107947 Length: 519 # NCBI annotation: gp23 major head protein # Family: family:all:364 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595301;genbank:gi:161622607;genbank:GeneID:5783666 Probab=100.00 E-value=1.1e-215 Score=1199.06 Aligned_cols=451 Identities=40% Similarity=0.656 Sum_probs=387.8 Q ss_pred CchHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHH------------hhhhh--hccccc----ccc Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASV------------LNETL--QTTGYT----GAS 62 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~------------~~e~~--~~~g~~----~~s 62 (457) ||+|+|+|||+||||||++|+|++.|||+|+++||||||++|+|++.+ |.|+. ++|||. +++ T Consensus 1 ~~~~~l~~kw~p~l~~~~~~~i~~~~~~~i~~~~~en~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~~~t~i~~~ 80 (519) T protein:vir:10 1 MKKNALVQKWSALLENEALPEIVGASKQAIIAKIFENQEQDILTAPEYRDEKISEAFGSFLTEAEIGGDHGYDATNIAAG 80 (519) T ss_pred CchhHHHHHhHHhhcccccchhhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHhhhcchhccCCccccCccccccc Confidence 999999999999999999999999999999999999999999998744 44553 788877 588 Q ss_pred ccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccccccccccc Q lcl|NC_015286. 63 TATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYD 142 (457) Q Consensus 63 t~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~ 142 (457) ++|+++++++|+|++|+||++|||||+|||||||||||||||||||+||+++.........+++|+|+++.|||+.+... T Consensus 81 ~~t~~v~~~~P~l~~l~rRa~p~LIa~DIwGVQPMTgPTGLIFAMRsrY~n~~~~~~g~ea~~~~nEadt~fSG~~~~~~ 160 (519) T protein:vir:10 81 QTSGAVTQIGPAVMGMVRRAIPHLIAFDICGVQPLNNPTGQVFALRAVYGKDPIAAGAKEAFHPMYAPNAMFSGQGAAET 160 (519) T ss_pred cccccccccchhHHHHHHHHHHhhhhhhhheeecCCchhhhhheeeeeecCCccccccccccccccccccccCccccccc Confidence 99999999999999999999999999999999999999999999999999886544344445557999999999876543 Q ss_pred ccccccc-----cc-----cc------------cccccccc---------ccccccccccccccccchhhhhccCC--CC Q lcl|NC_015286. 143 PGASDAT-----ND-----AE------------GTNPALLN---------DSPAGTYEQTADATGMTTATAEALDD--SS 189 (457) Q Consensus 143 ~~~~~~~-----~~-----~~------------gt~~~~~~---------~~~~gt~~~~~~~~Gm~Ta~aEaLg~--~s 189 (457) ....... ++ .. .+...... .........++.+.||+|+.+|+++. ++ T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~t~~ag~t~~~~~~~a~~~~~~~~~~~~~~~gmsTa~aEal~~lggs 240 (519) T protein:vir:10 161 FEALAASKVLEVGKIYSHFFEATGSAHFQAVEAVTVDAGATDAAKLDAAVTALVEAGQLAEIAEGMATSIAELQEGFNGS 240 (519) T ss_pred cccccccccccccccccccccccccceeccccccccCCCCcCccccccccccccccccccccccccccchhhccccCCCc Confidence 2211100 00 00 00000000 01111234577899999999999753 45 Q ss_pred CCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc Q lcl|NC_015286. 190 SNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT 269 (457) Q Consensus 190 ~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v 269 (457) ++.+|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+|||||||++|+..|+.++..++ T Consensus 241 s~~~f~EMaFsIeKvTVtAKSRaLKAEYTiELAQDLKAVHGLDAEtELaNILSTEImlEINReii~~i~~sa~~~~~g~t 320 (519) T protein:vir:10 241 TDNPWNEMGFRIDKQVIEAKSRQLKASYSIELAQDLRAVHGMDADAELSGILATEIMLEINREVIDWINYSAQVGKSGMT 320 (519) T ss_pred cccchhhhceeEEEEEEeeecccccccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHHhhhhhhhhcceeecc Confidence 67899999999999999999999999999999999999999999999999999999999999999887666666665544 Q ss_pred cc----ceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccc Q lcl|NC_015286. 270 AT----AGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNN 342 (457) Q Consensus 270 ~~----~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~ 342 (457) .+ +|||||+++.| +||++|+||+|+|||+||+|+|+|+|+||+|||||||+|||++|+++|++.+.+++.. + T Consensus 321 ~~~~~~aGv~d~~~~~d~~~~rw~~e~~k~L~~~i~~~an~I~~~T~r~~gn~ii~S~~Va~~L~~~g~~~~~~~~~~-~ 399 (519) T protein:vir:10 321 NTVGAKAGVFDFQDPIDIRGARWAGESFKALLFQIDKEAAEIARQTGRGAGNFIIASRNVVNVLAAVDTSVSYAAQGL-G 399 (519) T ss_pred cCcccccceeecccccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccEEEEchHHHHHHhhccchhccccccc-c Confidence 33 69999998866 9999999999999999999999999999999999999999999999999988876654 4 Q ss_pred cccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeee Q lcl|NC_015286. 343 ALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRY 422 (457) Q Consensus 343 ~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY 422 (457) ...++|+++.+|+|+|+|||+||||+|++ +|||+|||||++|+|+|||||||||+++++++||+||||+||||||| T Consensus 400 ~~~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfyaPYv~l~~~~~~dp~sfqP~~g~~tRY 475 (519) T protein:vir:10 400 QGFNVDTTKAVFAGVLGGKYRVYIDQYAR----SDYFTIGYKGSNEMDAGIYYAPYVALTPLRGSDPKNFQPVMGFKTRY 475 (519) T ss_pred ccccccCCCceEEEEecCceEEEecCCCC----cceEEEEEecCcccccceeeccccccccccccCCccccceeeeeeee Confidence 45689999999999999999999999966 79999999999999999999999999999999999999999999999 Q ss_pred eeeeccccccccCc-ccccccc---------cchheeeeeeeec Q lcl|NC_015286. 423 GMVSNPFAQGLTQG-SGALTAN---------TNRYYRRVQVANL 456 (457) Q Consensus 423 ~l~~nP~~~~~~~~-~~~~~~~---------~n~~~~r~~~~~l 456 (457) ||++|||+++++|+ +.++++| .|.|||||+|+|| T Consensus 476 ~l~~NP~~~~~~~~~~~~i~~g~~~~a~~~~~n~y~r~v~v~~~ 519 (519) T protein:vir:10 476 GIGINPFADPAAQAPTKRIQNGMPDIVNSLGLNGYFRRVYVKGI 519 (519) T ss_pred ceeecCcccccccCccceeccCchhhhccccCceeeeeeeeecC Confidence 99999999988765 4577775 3679999999999 No 14 >protein:vir:80986 Length: 528 # NCBI annotation: gp23 major head protein # Family: family:all:364 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469506;genbank:gi:157311463;genbank:GeneID:5602119 Probab=100.00 E-value=1.3e-214 Score=1193.25 Aligned_cols=449 Identities=40% Similarity=0.647 Sum_probs=385.3 Q ss_pred Cc-hHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHHhh------------hhh--hccccc----cc Q lcl|NC_015286. 1 MS-LQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLN------------ETL--QTTGYT----GA 61 (457) Q Consensus 1 ~~-~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~------------e~~--~~~g~~----~~ 61 (457) |. +|+|+|||+||||||++|||++.+||+|+++|||||||+|+|++.+++ |+. ++|||+ +| T Consensus 1 ~~~~~~l~~kw~p~l~~~~~~~i~~~~~~~~~a~llenq~~~~~~~~~~~~~~~~~~~~~~l~ea~~~~~~~~~~~~i~e 80 (528) T protein:vir:80 1 MKTTKELMEKWSPLLENEKLPEIATASKQKLVAKILESQEADFAVDPIYKDEKVVEAFGGFIAEAEVAGDHGYDASQIAA 80 (528) T ss_pred CcchHHHHHhhhHhhcCCccchhcchhhhhhhhhhhhhhhHHhhccccccchHHHHhhhhhccccccccccCCccccccc Confidence 65 999999999999999999999999999999999999999999985544 442 789977 58 Q ss_pred cccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccc--ccccccccccccc Q lcl|NC_015286. 62 STATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAF--FNEPNAGFSGGPG 139 (457) Q Consensus 62 st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAl--fnEa~t~fSG~~~ 139 (457) |++|++|++|||+||+||||++|||||+|||||||||||||||||||+||+++.... +.+||| |+++++.||+..+ T Consensus 81 s~~t~~v~~~~P~Li~lvRra~p~LIa~DIwGVQPMTgPTGLIFAMRsrY~~~~~~~--~~~ea~~~~~~~da~fS~~~t 158 (528) T protein:vir:80 81 GQTTGAITNVGPAVIGMVRRAIPNLIAFDICGVQPMSTPTSQIFAIRSVYGPNPLAS--QAKEAFHPMYAPDAFHSSLAA 158 (528) T ss_pred cccccccccCCchhhhHHHHHHhhhhhhhhheeccCCchhhhheeeeeeecCCcccc--ccccccccccccccccccccc Confidence 999999999999999999999999999999999999999999999999999876543 334444 5567777766443 Q ss_pred ccccccc------------------cc---ccccccc-------------cccccc------ccccccccccccccccch Q lcl|NC_015286. 140 AYDPGAS------------------DA---TNDAEGT-------------NPALLN------DSPAGTYEQTADATGMTT 179 (457) Q Consensus 140 ~~~~~~~------------------~~---~~~~~gt-------------~~~~~~------~~~~gt~~~~~~~~Gm~T 179 (457) ....... .. .....+. .++... .........++++.||+| T Consensus 159 ~~~a~~~ea~t~fs~~~~~~~~~~G~~~~~t~~~tg~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~~~~~~~~~~Gm~T 238 (528) T protein:vir:80 159 KGAAVGSPTGTPFAKLAIGTQIEAGDIVHHTFAETGIAYLQNVTAEQVTPTKAGSESEDEVVMKLMEEGKLAEIAFGMAT 238 (528) T ss_pred cccccccccccccccccccccccccceeccccccccccccccccccccCccccCCcccccccccccccccccccccccch Confidence 2211100 00 0000000 000000 001112234678899999 Q ss_pred hhhhccCC--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhh Q lcl|NC_015286. 180 ATAEALDD--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTI 257 (457) Q Consensus 180 a~aEaLg~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l 257 (457) +.+|.++. ++++++|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+|||||||++| T Consensus 239 a~AE~le~lg~ss~~~f~EMaFsIEKvTVtAKSRaLKAEYTiELAQDLKAIHGLDAEtELaNILStEImlEINReii~~i 318 (528) T protein:vir:80 239 SIAEIQEGFNGSSNNPWAEMSMRIDKQVVEAKSRQLKARYSIEVAQDLRAVHGMDADAELNAILANEVLLEINREIVDVI 318 (528) T ss_pred hhhhhhcccCCCccccccceeeEEEEEEEeeeccceeccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHHhhh Confidence 99997652 4567899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hheeeeeecccc----ccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCC Q lcl|NC_015286. 258 YTNAVKGAQNNT----ATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAG 330 (457) Q Consensus 258 ~tvA~rgk~~~v----~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg 330 (457) +..|+.||..++ +.+|+|||+++.| +||++|+||+|+|||+||+|+|+|+|+||+|||||||++||++|+|+| T Consensus 319 ~~~a~~~~~~~t~~~~~~~G~~dl~~~~d~~g~r~~~e~~k~L~~~i~~~an~I~~~T~~~~gn~vi~S~~Va~~L~~~g 398 (528) T protein:vir:80 319 NFTAQVGKTGMTQTVGSKAGVFDLQDPIDTRGARWAGESFKSLIYQIDKEAAEIARQTGRGAGNFVIASRNVVNILASAD 398 (528) T ss_pred hheeeeeeeeeeeccccccceeeccccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccccEEEEchHHHHHHhhcc Confidence 999999998776 4589999998776 899999999999999999999999999999999999999999999999 Q ss_pred cceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCc Q lcl|NC_015286. 331 VLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPD 410 (457) Q Consensus 331 ~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~ 410 (457) ++++.++..... ..++|+++.+|+|+|+|||+||||+|++ +|||+|||||++|+|+||||||||||++++++||+ T Consensus 399 ~~~~~~~~~~~~-~~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfy~PYv~l~~~~~~dp~ 473 (528) T protein:vir:80 399 QGISLAMQGAAK-GLNTDTTKAVFAGVLAGKYKVFIDQYAR----QDYFTVGYKGDNEMDAGIYYAPYVALTPLRATDPQ 473 (528) T ss_pred cccccccccccc-ccccCCCCceEEEEecCceEEEecCCCC----cceEEEEEeCCcccccceeecccccceeeEeeCCc Confidence 988887765544 4678999999999999999999999965 89999999999999999999999999999999999 Q ss_pred cccceeeeeeeeeeeeccccccccCc-ccccccc--------cchheeeeeeeec Q lcl|NC_015286. 411 TFQPKIGFKTRYGMVSNPFAQGLTQG-SGALTAN--------TNRYYRRVQVANL 456 (457) Q Consensus 411 s~qP~~g~~tRY~l~~nP~~~~~~~~-~~~~~~~--------~n~~~~r~~~~~l 456 (457) ||||+|||||||||++|||+++.+|. ++|+++| +|.||||++|+|| T Consensus 474 sfqP~~g~~tRY~l~~NP~~~~~~~~~~~r~~~g~~~~~~ag~n~~~r~~~Vk~~ 528 (528) T protein:vir:80 474 SFHPVLGFKTRYGIGINPFADSKSQAPSARITSGMLSKDSVGKNAYFRRVWVKGC 528 (528) T ss_pred cccceeeeeeeeceeecCcccccCCcccccccccchhhhhcCccceeEEeeeccC Confidence 99999999999999999999999886 6788764 4569999999999 No 15 >protein:vir:98143 Length: 524 # NCBI annotation: gp23 precursor of major head subunit # Family: family:all:364 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239203;genbank:gi:66391678;genbank:GeneID:3416245 Probab=100.00 E-value=2.2e-214 Score=1191.98 Aligned_cols=446 Identities=41% Similarity=0.693 Sum_probs=385.3 Q ss_pred Cc-hHHHHHHhhHhhcc-ccccccccchhhhhhhhhccchHHHHHHHHHH------------hhhh--hhccccc----c Q lcl|NC_015286. 1 MS-LQQLQEKWAPVLNH-ESLPEIEDTHKRGVVAQLLENQEKAITEEASV------------LNET--LQTTGYT----G 60 (457) Q Consensus 1 ~~-~~~l~~~w~~~l~~-~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~------------~~e~--~~~~g~~----~ 60 (457) || +|+|+|||+||||+ |++|||++.+||+|+++||||||||++|++.+ |.|+ .|+||++ + T Consensus 1 ~~~~~~l~~kw~p~l~~~~~~~~i~~~~~~~~~a~llenq~~~~~~~~~~~~~~~~~~~~~~l~ea~~~~~~~~~~~~i~ 80 (524) T protein:vir:98 1 MSKKNELMEKWNDLLESQEGLPDIATKSKKQLVAAILEAQEKDAETDPVYRDEKIVESFGGFLAEAEIAGDHNYDQTNIA 80 (524) T ss_pred CcchHHHHHHhHHHhcCCcCcchhcchhhHHHHHHHHhhHHHHHhcCccccchHHHHhhhcccccccccccccccccccc Confidence 99 56699999999986 89999999999999999999999999999854 4454 3888877 6 Q ss_pred ccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccc-------ccc Q lcl|NC_015286. 61 ASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEP-------NAG 133 (457) Q Consensus 61 ~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa-------~t~ 133 (457) ||++|++|+++||+||+||||++|||||+|||||||||||||||||||+||+++... .++||+|||| |+. T Consensus 81 ~s~~t~~v~~~~P~Li~lvRra~p~LIa~DIwGVQPMTgPTGLIFAmRsrY~n~~~~---~gteA~~nEAf~~~ye~dt~ 157 (524) T protein:vir:98 81 SGKSSGAITNIGPAVIGMVRRAIPNLIAFDICGVQPMTGPTGQVFALRAVYGKDPLA---GGTPADVREAFHPMFAPDTM 157 (524) T ss_pred ccccccccccccchhhhHHHHHHHhhhhhhhheeccCCchhhhhhhhheeecCCCCC---cccccccccccccccccccc Confidence 899999999999999999999999999999999999999999999999999987643 3357777665 899 Q ss_pred ccccccccccccccc----------------------------cccccccccccccccccc---cccccccccccchhhh Q lcl|NC_015286. 134 FSGGPGAYDPGASDA----------------------------TNDAEGTNPALLNDSPAG---TYEQTADATGMTTATA 182 (457) Q Consensus 134 fSG~~~~~~~~~~~~----------------------------~~~~~gt~~~~~~~~~~g---t~~~~~~~~Gm~Ta~a 182 (457) |||.++......... .....+++|..++..... ....++++.||+|+.+ T Consensus 158 fSG~g~~t~~s~~~~g~~~~~g~~~~~~~~~~g~~~~~~~~~g~~~~tgt~p~~~~~a~~~~~~~g~~~~~~~GmsTA~a 237 (524) T protein:vir:98 158 YSGEGAHTAFAKITTGTAIATGAIVYHIFQETGIAYFQNVTSGNVTVTGADPAALDAAVIAENEKGTLAEISVGMATSVA 237 (524) T ss_pred cCCccccccccccccccccccccccccccccccceeccccccCcccccccccccccccccccccccceeecccccchhhh Confidence 998765332111100 011223333333222211 2234678899999999 Q ss_pred hccCC--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhhe Q lcl|NC_015286. 183 EALDD--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTN 260 (457) Q Consensus 183 EaLg~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tv 260 (457) |+|++ ++++++|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+|||||||++|+.. T Consensus 238 EaL~~~g~ss~~~f~EMaFsIeKvtVtAKSRaLKAEYTiELAQDLKAVHGLDAEtELsNILSTEImlEINReii~~i~~~ 317 (524) T protein:vir:98 238 ELQENFNGSSANPWNEMAFRIDKQVIEARSRQLKAQYSVELAQDLRAVHGMDADAELSAILATEIMLEINREIVDLINYT 317 (524) T ss_pred hhhccCCCCccccccceeeEEEEEEEeeecccccccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHHHHHhhh Confidence 99963 4567899999999999999999999999999999999999999999999999999999999999999987666 Q ss_pred eeeeecccc----ccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhh--CCc Q lcl|NC_015286. 261 AVKGAQNNT----ATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGM--AGV 331 (457) Q Consensus 261 A~rgk~~~v----~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~--sg~ 331 (457) |+.++.+++ +.+|+|||+++.| +||++|+||+|++||++|+|+|+|+|+||+|||||||++||++|+| +|| T Consensus 318 a~~~~~g~t~~~~~~~G~~dl~~~~d~~~~r~~~e~~~~L~~~i~~~an~I~~~T~rg~~n~~i~S~~Va~~L~~~~~g~ 397 (524) T protein:vir:98 318 AQVGKSGFTQTVGSKAGSFDFQDPVDIRGARWAGESYKALLIQIDKEANEIARQTGRGAGNFIIASRNVVSALARIDSGI 397 (524) T ss_pred heeceeecccccccccceeeccccccccccchhHHHHHHHHHHHHHHHHHHHHhhccccccEEEEchHHHHHHhhhhccc Confidence 666665433 3469999988854 9999999999999999999999999999999999999999999999 899 Q ss_pred ceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCcc Q lcl|NC_015286. 332 LDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDT 411 (457) Q Consensus 332 l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s 411 (457) +.+++.++. ..+.|+++.+|+|+|+|||+||||+|++ +|||+|||||++|+|+||||||||||++++++||+| T Consensus 398 ~~~s~~~~~---~~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfyaPYv~l~~~~~~dp~s 470 (524) T protein:vir:98 398 TPASQGLQK---TLNVDTTKAVFAGVLGGTYKVYIDQYAR----QDYFTVGFKGDNEMDAGIYYAPYVALTPLRGSDPKN 470 (524) T ss_pred ccccchhhc---ccccCCccceEEEEecCceEEEecCCCC----cceEEEEeeCCcccccceeeccccccccccccCCcc Confidence 888777654 5788999999999999999999999965 899999999999999999999999999999999999 Q ss_pred ccceeeeeeeeeeeeccccccccCccc-cccccc--------chheeeeeeeec Q lcl|NC_015286. 412 FQPKIGFKTRYGMVSNPFAQGLTQGSG-ALTANT--------NRYYRRVQVANL 456 (457) Q Consensus 412 ~qP~~g~~tRY~l~~nP~~~~~~~~~~-~~~~~~--------n~~~~r~~~~~l 456 (457) |||+|||||||||++|||+++.++.++ |+|+|. |.||||++|+|| T Consensus 471 fqP~~g~~tRY~l~~NP~~~~~~~~~~~ri~~g~~~~~~ag~n~~~r~~~Vk~l 524 (524) T protein:vir:98 471 FQPVMGFKTRYGIGINPFANSRSQAPADRITSGMISKEMCGKNAYFRKVWVKGL 524 (524) T ss_pred ccceeeeeeeeceeecCcccccCCccccccccCcchHhhcCccceeeEeeeccC Confidence 999999999999999999999988655 888755 459999999999 No 16 >protein:vir:6601 Length: 528 # NCBI annotation: major capsid protein # Family: family:all:364 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891732;genbank:gi:33620668;genbank:GeneID:1725275 Probab=100.00 E-value=5.3e-214 Score=1189.83 Aligned_cols=448 Identities=38% Similarity=0.642 Sum_probs=384.2 Q ss_pred Cc-hHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHHhh------------hhh--hccccc----cc Q lcl|NC_015286. 1 MS-LQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLN------------ETL--QTTGYT----GA 61 (457) Q Consensus 1 ~~-~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~------------e~~--~~~g~~----~~ 61 (457) |. +|+|+|||+||||||++|||++.+||+|+++|||||||+|+|++.+++ |+. ++||++ ++ T Consensus 1 ~~~~~~l~~kw~p~l~~~~~~~i~~~~~~~~~a~l~enq~~~~~~~~~~~~~~~~~~~~~~l~ea~~~~~~~~~~~~i~e 80 (528) T protein:vir:66 1 MKTTKELMEKWSPLLENEKLPEIATASKQKLVAKILESQEADFAVDPIYKDEKVVEAFGGFIAEAEVAGDHGYDASQIAA 80 (528) T ss_pred CcchHHHHHHhHHhhcCCCcchhcchhhhhhhhhhhhhhHHHhhcccchhhHHHHHhhhhhhhhhcccccccccchhccc Confidence 65 999999999999999999999999999999999999999999985544 433 788877 59 Q ss_pred cccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccC--------------------- Q lcl|NC_015286. 62 STATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAAS--------------------- 120 (457) Q Consensus 62 st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~--------------------- 120 (457) |++|++|+++||+||+|||||+|||||+|||||||||||||||||||++|+++.....+ T Consensus 81 s~~t~~v~~~~P~Li~lvRRa~p~LIa~DIwGVQPMTgPTGlIFAmRs~Y~~~~~~~~~~eAfh~~~g~ea~fsea~t~~ 160 (528) T protein:vir:66 81 GQTTGAITNVGPAVIGMVRRAIPNLIAFDICGVQPMSTPTSQIFAIRSVYGGDPLKSGAREAFHPMYAPDAFHSSLAAKE 160 (528) T ss_pred cccccccccCchhHHHHHHHHHHhhhhhhhheeecCCchhhhheeeeeeecCCccccccccccccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999876532211 Q ss_pred ---------------------cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc Q lcl|NC_015286. 121 ---------------------GYDEAFFNEPNAGFSGGPGAYDPGAS-DATNDAEGTNPALLNDSPAGTYEQTADATGMT 178 (457) Q Consensus 121 ---------------------~~~EAlfnEa~t~fSG~~~~~~~~~~-~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~ 178 (457) .++|++|+|++++||+.......... ...+...++.+.. ........++++.||+ T Consensus 161 a~~gGpTGliFAm~s~y~s~~~g~ea~~nea~t~fs~~~~~~~~~~~~~~~g~~~g~~~~~---~~~a~~~~~~~~~Gm~ 237 (528) T protein:vir:66 161 ATVGSPTGTAFAKLTLSQAITAGDIVYHTFAETGIAYLQNVTGDSVTPQKVGSESEDEVVM---KLIEEGKLAEIAFGMA 237 (528) T ss_pred ccccCCccceeecccccccccccceeeecccccceeeeccccccccccCcccccccccccc---cccccccceecccccc Confidence 23444555555555543322211111 0111111111111 1222334577889999 Q ss_pred hhhhhccCC--CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhh Q lcl|NC_015286. 179 TATAEALDD--SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRT 256 (457) Q Consensus 179 Ta~aEaLg~--~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~ 256 (457) |+.+|++++ ++++..|+||+|+||||+|||||||||||||||||||||||||||||+||+||||||||+|||||||++ T Consensus 238 Ta~aEale~lg~~s~~~f~EMaFsIeK~tVtAKSRaLKAEYTiELAQDLKAIHGLDAEtELsNILStEImlEINREii~~ 317 (528) T protein:vir:66 238 TSIAEIQEGFNGSSNNPWAEMSMRIDKQVVEAKSRQLKARYSIEVAQDLRAVHGMDADAELNAILANEVLLEINREIVDV 317 (528) T ss_pred hhhhhhhcccCCCcccchhhcceEEEeEEEEeeccceeccccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhHHHHhh Confidence 999998753 455678999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhheeeeeecccc----ccceeEeeccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhC Q lcl|NC_015286. 257 IYTNAVKGAQNNT----ATAGVFDLDVDSN---GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMA 329 (457) Q Consensus 257 l~tvA~rgk~~~v----~~~Gv~Dl~~~~~---grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~s 329 (457) |+..|+.||..++ +.+|+|||+++.| +||++|+||+|+|||+||+|+|+|+|+||+|||||||++||++|+|+ T Consensus 318 i~~~a~~~~~~~t~~~~~~aG~~dl~~~~d~~g~rw~~e~~k~L~~~i~~~an~I~~~T~r~~gn~vi~S~~Va~~L~~~ 397 (528) T protein:vir:66 318 INFTAQVGKTGMTQTVGSKAGVFDLQDPIDTRGARWAGESFKSLIYQIDKEAAEIARQTGRGAGNFVIASRNVVNILASA 397 (528) T ss_pred hhheeeeeeeeeeeccccccceeecccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccccccEEEEchHHHHHHhhc Confidence 9999999998777 4579999997776 69999999999999999999999999999999999999999999999 Q ss_pred CcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCC Q lcl|NC_015286. 330 GVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINP 409 (457) Q Consensus 330 g~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp 409 (457) |++++.++..... ..++|+++.+|+|+|+|||+||||+|++ +|||+|||||++|+|+|||||||||+++++++|| T Consensus 398 g~~~~~~~~~~~~-~~~~d~~~~~~~G~l~~~~~vy~D~y~~----~dy~~vG~KG~~~~~~glfyaPYv~l~~~~~~dp 472 (528) T protein:vir:66 398 DQGISLAMQGAAK-GLNTDTTKAVFAGVLAGKYKVFIDQYAR----QDYFTVGYKGDNEMDAGIYYAPYVALTPLRATDP 472 (528) T ss_pred ccccccccccccc-ccccCCCCceeEEEecCceEEEecCCCC----cceEEEEEeCCcccccceeecccccceeeEeeCC Confidence 9998887776544 4678999999999999999999999965 8999999999999999999999999999999999 Q ss_pred ccccceeeeeeeeeeeeccccccccCc-cccccccc--------chheeeeeeeec Q lcl|NC_015286. 410 DTFQPKIGFKTRYGMVSNPFAQGLTQG-SGALTANT--------NRYYRRVQVANL 456 (457) Q Consensus 410 ~s~qP~~g~~tRY~l~~nP~~~~~~~~-~~~~~~~~--------n~~~~r~~~~~l 456 (457) +||||+|||||||||++|||+++.+|+ ++|+++|. |.||||++|+|| T Consensus 473 ~sfqP~~g~~tRY~l~vNP~~~~~~~~~~~ri~~g~~~~~~ag~n~~~r~~~Vk~~ 528 (528) T protein:vir:66 473 QSFHPVLGFKTRYGIGINPFADSKSQEPSARITSGMLSKDSVGKNAYFRRVWVKGC 528 (528) T ss_pred ccccceeeeeeeeceeecCcccccCccccccccccchhhhhcCccceeEEeeeccC Confidence 999999999999999999999999766 78888754 569999999999 No 17 >protein:vir:5942 Length: 523 # NCBI annotation: similar to major head protein # Family: family:all:364 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835728;genbank:gi:30044131 Probab=100.00 E-value=5.4e-193 Score=1074.66 Aligned_cols=410 Identities=26% Similarity=0.341 Sum_probs=335.3 Q ss_pred Cc----hHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHHhhhhhhccccccccccccccccccceeh Q lcl|NC_015286. 1 MS----LQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTGYTGASTATGPVAGFDPVLI 76 (457) Q Consensus 1 ~~----~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~tg~i~~~~P~Lv 76 (457) || +|+|+|||+||||.++.| |||+||++|||||+|+ ++++|. |+..|+.|++|.| || T Consensus 1 ~~~~~~~e~l~~kw~p~l~~~~~~-----~~~~~~a~llenq~~~---~~~~l~----------e~~~~~~~~~~~~-~~ 61 (523) T protein:vir:59 1 MSQPKINEQLIEKWQPLLEGCRND-----WERHTLATLLENQYRE---AKKHLM----------ETTQTTEVDGWNL-AL 61 (523) T ss_pred CCcchhhHHHHHhhhhhhcccCCh-----hHHHHHHHHhhhhhHH---HHHhhh----------hhhhccccccccc-hh Confidence 88 457999999999976654 7999999999999985 655554 4566889999996 99 Q ss_pred hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCccc--------Ccccccccccccccccccccccccccccc Q lcl|NC_015286. 77 SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAA--------SGYDEAFFNEPNAGFSGGPGAYDPGASDA 148 (457) Q Consensus 77 ~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~--------~~~~EAlfnEa~t~fSG~~~~~~~~~~~~ 148 (457) +|+||++|||||+||||||||||||||||||||||.++.+... +...+..++|+++.|++............ T Consensus 62 ~~v~r~~p~l~a~DIWGVQPMTGPTGLIFAMRSRY~~q~gteA~yg~~~~~~~~a~~~~~ean~~~s~~~~~~~~~~d~~ 141 (523) T protein:vir:59 62 PIVRRVFANLRATDLVSVQPLSLPTGLVFYLDFKSPELPGNGSVYGGTGLTTDTATGGLYDENARLSRREYETTITVDLA 141 (523) T ss_pred hhhhhHhhhhhhhhccccccCCCCcceeEEEEeeccCCCCcccccCccccCcccccccccccccccccccccCccCCCcc Confidence 9999999999999999999999999999999999998876411 11112234456666665332211100000 Q ss_pred c-------------------------------------cc-----------ccc-------------------------- Q lcl|NC_015286. 149 T-------------------------------------ND-----------AEG-------------------------- 154 (457) Q Consensus 149 ~-------------------------------------~~-----------~~g-------------------------- 154 (457) . +. ..+ T Consensus 142 ~sg~~~~~~~a~stg~A~a~~s~si~k~~vTa~s~agta~~~li~A~~~q~itg~tga~fa~s~~~an~astAss~Al~g 221 (523) T protein:vir:59 142 TAQQATMRDVGFDTGIASLVSSGAVYYVDVPVASLPGVADVNTVRFWQYDDASGDPENTVAYPLPRYNRIVGAVGSALYA 221 (523) T ss_pred cccccccccccccccchhhccccceeeeeccccccccccccccccccccccccccccccccchhhccccccccccccccc Confidence 0 00 000 Q ss_pred -------ccccccccc---ccccccccccccccchhhhhccCC----CCCCcccccceeEEEEEEEEeecccccceeeHH Q lcl|NC_015286. 155 -------TNPALLNDS---PAGTYEQTADATGMTTATAEALDD----SSSNTAFREMGFSIEKVTVTARARALKAEYSIE 220 (457) Q Consensus 155 -------t~~~~~~~~---~~gt~~~~~~~~Gm~Ta~aEaLg~----~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~E 220 (457) +++...... ..+....++.+.||+|+.+|.+++ ++++..|+||+|+||||+||||||||||||||| T Consensus 222 EA~t~~sTd~at~~~Gtt~t~~~~~lyt~~~g~~t~~~~~~~~~~~~~~~~~~~~eM~FsIeK~tVtAkSRaLKAeYT~E 301 (523) T protein:vir:59 222 RLFFVTGSDFATVAGGTPSTQDLDLVYYIDARNDFEDQSTDPDYPDPGFQSLDIPEINLELRSRPVATKTRKLRAAWTPE 301 (523) T ss_pred cccccccccccccCCCcccccccccccccccccchhhccccccccccccccccccceeeEEEeEEEeeecccccccccHH Confidence 000000000 001111245578999999999985 355779999999999999999999999999999 Q ss_pred HHHhHHHhh-CCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHH--------HHHHH Q lcl|NC_015286. 221 LAQDLKAIH-GLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWS--------VEKFK 291 (457) Q Consensus 221 LAQDLkAiH-GLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~--------~e~~k 291 (457) ||||||||| |||||+||+|||||||||||||||||+||++|+|||++|++++|||||+++.+++|. +|+|| T Consensus 302 LAQDLKAiH~GLDAE~ELanILStEImlEINR~ii~~~~~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~e~~~ 381 (523) T protein:vir:59 302 AMQDLAAYHKGVDLENEIVTLMSQYIAREIDLEILSTIMAHARRTDNYGFWSEVVGEYYDETSGNFVAGNFYGSKQEWLA 381 (523) T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHhhHHHHHhHhhhheeeeeccccccceeeecccccchhhhhhhhhhhHHHHH Confidence 999999999 999999999999999999999999999999999999999999999999999999997 89999 Q ss_pred HHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccc Q lcl|NC_015286. 292 GLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSA 371 (457) Q Consensus 292 ~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~ 371 (457) .|+|||++|+|+|+|+|+||+|||||||+|||++|++||||+..+.. ..|+++.+|+|+|+|||+||||+|++ T Consensus 382 ~l~~~~~~~~n~i~~~t~~~~~~~~~~s~~v~~~l~~~~~~~~~~~~-------~~~~~~~~~~g~l~~~~~vy~d~~~~ 454 (523) T protein:vir:59 382 TLMIELNKVSNRIQQKTAVAGANFLVTSPQVAALLESMPGFTPGNDN-------RDGGTGIFYVGMVQGRYRLYKNIYQN 454 (523) T ss_pred HHHHHHHHHHHHHHHhcccccccEEEEchhHHHHHHhccccccCCcc-------ccccccceeEEEecCceEEEecCCCC Confidence 99999999999999999999999999999999999999999665442 23678889999999999999999965 Q ss_pred cccccceEEEEEec-CCCccceeEEcccccccccccc-CCccccceeeeeeeeeeee-cccccccc-Cccccc Q lcl|NC_015286. 372 NVADKHYYVAGYKG-TSPYDAGLFYCPYVPLQQVRAI-NPDTFQPKIGFKTRYGMVS-NPFAQGLT-QGSGAL 440 (457) Q Consensus 372 ~~~~~dY~~vG~KG-~~~~d~glfyaPYv~~~~~~~~-Dp~s~qP~~g~~tRY~l~~-nP~~~~~~-~~~~~~ 440 (457) +|||+||||| .+++|+|||||||||+.+++++ ||+||||+|||||||||++ |||++++- .+--.. T Consensus 455 ----~dy~~~g~k~~~~~~~~~~~y~Py~~l~~~~~~~dp~s~qp~~~~~tRY~l~v~nP~~~~~~~~~~~~~ 523 (523) T protein:vir:59 455 ----QPVIIMGNQDLNTPWQTGAVYAPYVPLLFTPTIVDPVNFSYRRGLMTRYALEVVRPEFYGLLYVKLLQP 523 (523) T ss_pred ----cceEEEEecccCCcccccceecccchhhcccccccCCcccceeeeeeehhheecchhHhhhhhhhhcCC Confidence 8999999999 5699999999999999999986 9999999999999999975 99999773 111001 No 18 >protein:vir:41 Length: 299 # NCBI annotation: major capsid protein # Family: family:all:507 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463467;swissprot:trembl:q9t1b7;genbank:gi:16798789;uniprot:Q9T1B7;genbank:GeneID:922353 Probab=96.87 E-value=0.00029 Score=40.01 Aligned_cols=272 Identities=11% Similarity=0.030 Sum_probs=133.0 Q ss_pred ccccccccccccccc--cccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccc Q lcl|NC_015286. 56 TGYTGASTATGPVAG--FDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNA 132 (457) Q Consensus 56 ~g~~~~st~tg~i~~--~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t 132 (457) -|+++.++++.+-.+ .-|.+ -.+++++..+.+..+++-+-||++.+.-+- .. .++ ++ T Consensus 1 ~g~~a~~~~~~~~~~~~iP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~~-----~~--~~~------~a------- 60 (299) T protein:vir:41 1 MGFNPDTTTMQSAKTGSIPINISEQIITGVKNGSAAMKLAKAVPMTKPEEEFT-----FM--SGV------GA------- 60 (299) T ss_pred CCcCCCcccccCCCceecchhHHHHHHHHHHhcchhhhhceeeecCCCcEEEE-----EE--cCC------ce------- Confidence 676665554332221 12222 346777788889999999999988763221 11 010 00 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeeccc Q lcl|NC_015286. 133 GFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARA 212 (457) Q Consensus 133 ~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRa 212 (457) . -.+| +..++|...++++++...|..+ T Consensus 61 ~----------------------------------------------~v~E-------~~~~~~~~~~f~~v~l~~~k~~ 87 (299) T protein:vir:41 61 F----------------------------------------------WVDE-------AERIQTSKPTFTKAKMRSKKMG 87 (299) T ss_pred e----------------------------------------------eeec-------CccccccccceeEEEEeeEEEE Confidence 0 0011 0123444445578888888888 Q ss_pred ccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccc-----cchhHHH Q lcl|NC_015286. 213 LKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVD-----SNGRWSV 287 (457) Q Consensus 213 LKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~-----~~grw~~ 287 (457) -...+|-||.+|-. .|.++.|.+.|+..|...+|+.||.---+ ++. .|++-.... ..+--.. T Consensus 88 ~~~~is~ell~ds~----~~~~~~i~~~l~~a~~~~~d~a~l~G~g~----~~~-----~gil~~~~~~~~~~~~~~~~~ 154 (299) T protein:vir:41 88 VIIPTTKENLNYSV----TNFFSLMQAEIVEAFYKKFDQAVFTGVES----PYN-----WNILKSATDASNLVEETANKY 154 (299) T ss_pred EeehhhHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHhhcccC----ccc-----ccccccccccceeeccccccH Confidence 88889999999854 46788999999999999999988853111 011 111110000 0000011 Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEe Q lcl|NC_015286. 288 EKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVD 367 (457) Q Consensus 288 e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D 367 (457) +....++.++.. -.++++.+||+++....|.. +. ..+|.- ....+.+. -.++|. +++|++. T Consensus 155 ~~l~~~~~~l~~---------~~~~~~~~v~n~~~~~~L~~---lk---d~~G~~-l~~~~~~~--~~~~l~-G~PV~~~ 215 (299) T protein:vir:41 155 DDLNEAIGLIEA---------EDLEPNGIATIRKQRVKYRS---TK---DGNGMP-IFNTATSN--GVDDVL-GLPIAYT 215 (299) T ss_pred HHHHHHHHhhhc---------ccCCcCEEEEcHHHHHHHHH---hh---ccCCce-eecCCcCC--CCceec-ceeeEEe Confidence 223334444322 23456678999999988876 21 111110 01111111 124665 5788888 Q ss_pred ccccccccc--------ceEEEEEecCCCcc--ceeEEccccccccccccCCcc-----ccc-eeee--eeeeee-eecc Q lcl|NC_015286. 368 PYSANVADK--------HYYVAGYKGTSPYD--AGLFYCPYVPLQQVRAINPDT-----FQP-KIGF--KTRYGM-VSNP 428 (457) Q Consensus 368 ~y~~~~~~~--------dY~~vG~KG~~~~d--~glfyaPYv~~~~~~~~Dp~s-----~qP-~~g~--~tRY~l-~~nP 428 (457) ...|..... .++++|..++.+++ .-.++- ...||+. ||- .++| ..|++. +.|| T Consensus 216 ~~~~~~~~~~~~~~gdfs~~~i~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~r~~~~~d~~v~~~ 287 (299) T protein:vir:41 216 PKYTFGDKDISELVGDWNQAYYGILRGVEYEILTEATLT--------TVADETGKPLNLAERDMAAIKATFEVGFMVVKD 287 (299) T ss_pred cccCCCCCceEEEEEecccEEEEEecCcEEEEeeccccc--------ccccccccchhhhhcCcEEEEEEEEeccEEecc Confidence 776643321 12223333322211 000000 1112221 222 2333 357777 5666 Q ss_pred ccccccCcccccccccc Q lcl|NC_015286. 429 FAQGLTQGSGALTANTN 445 (457) Q Consensus 429 ~~~~~~~~~~~~~~~~n 445 (457) -+-..=...+. | T Consensus 288 ~A~~~l~~~aa-----~ 299 (299) T protein:vir:41 288 EAFSAVQPKAG-----N 299 (299) T ss_pred cceEEEEeccC-----C Confidence 53322211111 2 No 19 >protein:vir:81100 Length: 415 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429874;genbank:gi:156603927;genbank:GeneID:5525320 Probab=96.71 E-value=0.0004 Score=39.24 Aligned_cols=340 Identities=16% Similarity=0.132 Sum_probs=136.2 Q ss_pred Cc-------------hHHHHHHhhHhh------ccccccccccchhhhhhh-hhccch-----------HHH-HHHHHHH Q lcl|NC_015286. 1 MS-------------LQQLQEKWAPVL------NHESLPEIEDTHKRGVVA-QLLENQ-----------EKA-ITEEASV 48 (457) Q Consensus 1 ~~-------------~~~l~~~w~~~l------~~~~~~~i~~~~~~~v~~-~~~~n~-----------~~~-~~~~~~~ 48 (457) ++ .+.|.++...+- +.+...++....+..... +...+. ... ..++.+. T Consensus 29 l~~~~~~~~~~~~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (415) T protein:vir:81 29 LNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEKDGTSENNQQSVEVNEARTYRNQANINDLGISIQNTKVTSQEVRD 108 (415) T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHHhhhhhhhhhHHHHHHH Confidence 11 112222222110 000001111111111110 000000 000 0001111 Q ss_pred hhhhhhccc-cccccccccccccccceeh--hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccc Q lcl|NC_015286. 49 LNETLQTTG-YTGASTATGPVAGFDPVLI--SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEA 125 (457) Q Consensus 49 ~~e~~~~~g-~~~~st~tg~i~~~~P~Lv--~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EA 125 (457) ..+...... ....++++.+-...-|.-+ .+++++.......+++.|.||++..+-+--.|. .+.. ++ T Consensus 109 ~~~~~~~~~~~~~~~~~~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~ 178 (415) T protein:vir:81 109 FTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQ-----SEVA-----AL 178 (415) T ss_pred HHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHhhhhhhhheeeeeccCCceeEEEEee-----cCCc-----cc Confidence 111111110 1111112211111233322 255556677788999999999998875443331 1100 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEE Q lcl|NC_015286. 126 FFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVT 205 (457) Q Consensus 126 lfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~t 205 (457) .+ ..+.+...+ .+...|.+..|.+.|. T Consensus 179 -------~~--------------------------------------------v~E~~~~~~-~~~~~~~~v~~~~~k~- 205 (415) T protein:vir:81 179 -------EK--------------------------------------------VEELEENPE-LAVKPFFQLAYDINTH- 205 (415) T ss_pred -------ee--------------------------------------------eccccccCc-ccccceeeEEeeeeee- Confidence 00 000000000 1112355555555554 Q ss_pred EEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhH Q lcl|NC_015286. 206 VTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRW 285 (457) Q Consensus 206 VtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw 285 (457) +-...+|-||.+|- .+|.+++|.+-|+..|..-+|+.||.-.-+-...+-..+....++ ... .++-- T Consensus 206 ------~~~~~iS~ell~ds----~~~l~~~i~~~l~~~~~~~~~~~il~g~g~g~~~~~~~~~~~~~~-~~~--~~~~~ 272 (415) T protein:vir:81 206 ------RGYFRISREAIEDA----KVNVLQELKLWMARTIAATRNKAIIDVITKGSTGSTSSGFEKEGK-KLE--VKKAK 272 (415) T ss_pred ------EeeehhhHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccccccccccc-ccc--ccccc Confidence 44556999999984 357899999999999999999999986533211110000001111 000 01111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEE Q lcl|NC_015286. 286 SVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVY 365 (457) Q Consensus 286 ~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy 365 (457) ..+....++..+... -.+++.+||++.....|.. ++ ..+|.- ....+.+ ....++| .+++|+ T Consensus 273 ~~~~i~~~~~~~~~~---------~~~~~~~v~n~~~~~~l~~---lk---d~~G~~-l~~~~~~-~~~~~~l-~G~pV~ 334 (415) T protein:vir:81 273 SLDDIKDAINLNVKP---------NYEHNVAIVSQTMFAKLDK---MK---DKLGNY-LIQPDVK-EKTQQRL-LGAKIE 334 (415) T ss_pred chhHHHHHHHhhhhh---------ccCCCEEEEcHHHHHHHHH---hh---ccCCce-eeccCcC-CCCCcee-cceeeE Confidence 123333444444322 2345678899999888765 21 111110 0111111 1223466 356787 Q ss_pred Eecccccccccce-EEEEEecCCCccceeEEcccccc--c--cccccCCccccceeeeeeeeee-eeccccccc------ Q lcl|NC_015286. 366 VDPYSANVADKHY-YVAGYKGTSPYDAGLFYCPYVPL--Q--QVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL------ 433 (457) Q Consensus 366 ~D~y~~~~~~~dY-~~vG~KG~~~~d~glfyaPYv~~--~--~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~------ 433 (457) +.++.|.-...++ +++|- |-.-|+-. . .+...|-..++..+....|++. +.+|-+-.. T Consensus 335 ~~~~~~~~~~~~~~~~~Gd----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~r~d~~v~~~~a~~~~~~~~~ 404 (415) T protein:vir:81 335 ILPDEVLGQKGNNTLIIGN----------LKDAIVLFDRSQYQASWTDYMHFGECLMIAVRQDCRILDYKSAIVIEYDDS 404 (415) T ss_pred EecccccCCCCccEEEEEe----------hhccEEEEeecceEEEEeccccCceEEEEEEEeccEEeccccEEEEEEecc Confidence 7765542111111 22221 00011100 0 1112244567777888889988 677764311 Q ss_pred cCccccccccc Q lcl|NC_015286. 434 TQGSGALTANT 444 (457) Q Consensus 434 ~~~~~~~~~~~ 444 (457) ..+++.+---. T Consensus 405 ~~~~~~~~~~~ 415 (415) T protein:vir:81 405 ERGEGDLGLEA 415 (415) T ss_pred CCCCCccccCC Confidence 11111111111 No 20 >protein:vir:98339 Length: 415 # NCBI annotation: putative capsid protein # Family: family:all:21 # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918931;genbank:gi:119443693;genbank:GeneID:4594501 Probab=96.71 E-value=0.0004 Score=39.24 Aligned_cols=340 Identities=16% Similarity=0.132 Sum_probs=136.2 Q ss_pred Cc-------------hHHHHHHhhHhh------ccccccccccchhhhhhh-hhccch-----------HHH-HHHHHHH Q lcl|NC_015286. 1 MS-------------LQQLQEKWAPVL------NHESLPEIEDTHKRGVVA-QLLENQ-----------EKA-ITEEASV 48 (457) Q Consensus 1 ~~-------------~~~l~~~w~~~l------~~~~~~~i~~~~~~~v~~-~~~~n~-----------~~~-~~~~~~~ 48 (457) ++ .+.|.++...+- +.+...++....+..... +...+. ... ..++.+. T Consensus 29 l~~~~~~~~~~~~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (415) T protein:vir:98 29 LNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEKDGTSENNQQSVEVNEARTYRNQANINDLGISIQNTKVTSQEVRD 108 (415) T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHHhhhhhhhhhHHHHHHH Confidence 11 112222222110 000001111111111110 000000 000 0001111 Q ss_pred hhhhhhccc-cccccccccccccccceeh--hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccc Q lcl|NC_015286. 49 LNETLQTTG-YTGASTATGPVAGFDPVLI--SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEA 125 (457) Q Consensus 49 ~~e~~~~~g-~~~~st~tg~i~~~~P~Lv--~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EA 125 (457) ..+...... ....++++.+-...-|.-+ .+++++.......+++.|.||++..+-+--.|. .+.. ++ T Consensus 109 ~~~~~~~~~~~~~~~~~~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~ 178 (415) T protein:vir:98 109 FTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQ-----SEVA-----AL 178 (415) T ss_pred HHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHhhhhhhhheeeeeccCCceeEEEEee-----cCCc-----cc Confidence 111111110 1111112211111233322 255556677788999999999998875443331 1100 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEE Q lcl|NC_015286. 126 FFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVT 205 (457) Q Consensus 126 lfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~t 205 (457) .+ ..+.+...+ .+...|.+..|.+.|. T Consensus 179 -------~~--------------------------------------------v~E~~~~~~-~~~~~~~~v~~~~~k~- 205 (415) T protein:vir:98 179 -------EK--------------------------------------------VEELEENPE-LAVKPFFQLAYDINTH- 205 (415) T ss_pred -------ee--------------------------------------------eccccccCc-ccccceeeEEeeeeee- Confidence 00 000000000 1112355555555554 Q ss_pred EEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhH Q lcl|NC_015286. 206 VTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRW 285 (457) Q Consensus 206 VtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw 285 (457) +-...+|-||.+|- .+|.+++|.+-|+..|..-+|+.||.-.-+-...+-..+....++ ... .++-- T Consensus 206 ------~~~~~iS~ell~ds----~~~l~~~i~~~l~~~~~~~~~~~il~g~g~g~~~~~~~~~~~~~~-~~~--~~~~~ 272 (415) T protein:vir:98 206 ------RGYFRISREAIEDA----KVNVLQELKLWMARTIAATRNKAIIDVITKGSTGSTSSGFEKEGK-KLE--VKKAK 272 (415) T ss_pred ------EeeehhhHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccccccccccc-ccc--ccccc Confidence 44556999999984 357899999999999999999999986533211110000001111 000 01111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEE Q lcl|NC_015286. 286 SVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVY 365 (457) Q Consensus 286 ~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy 365 (457) ..+....++..+... -.+++.+||++.....|.. ++ ..+|.- ....+.+ ....++| .+++|+ T Consensus 273 ~~~~i~~~~~~~~~~---------~~~~~~~v~n~~~~~~l~~---lk---d~~G~~-l~~~~~~-~~~~~~l-~G~pV~ 334 (415) T protein:vir:98 273 SLDDIKDAINLNVKP---------NYEHNVAIVSQTMFAKLDK---MK---DKLGNY-LIQPDVK-EKTQQRL-LGAKIE 334 (415) T ss_pred chhHHHHHHHhhhhh---------ccCCCEEEEcHHHHHHHHH---hh---ccCCce-eeccCcC-CCCCcee-cceeeE Confidence 123333444444322 2345678899999888765 21 111110 0111111 1223466 356787 Q ss_pred Eecccccccccce-EEEEEecCCCccceeEEcccccc--c--cccccCCccccceeeeeeeeee-eeccccccc------ Q lcl|NC_015286. 366 VDPYSANVADKHY-YVAGYKGTSPYDAGLFYCPYVPL--Q--QVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL------ 433 (457) Q Consensus 366 ~D~y~~~~~~~dY-~~vG~KG~~~~d~glfyaPYv~~--~--~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~------ 433 (457) +.++.|.-...++ +++|- |-.-|+-. . .+...|-..++..+....|++. +.+|-+-.. T Consensus 335 ~~~~~~~~~~~~~~~~~Gd----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~r~d~~v~~~~a~~~~~~~~~ 404 (415) T protein:vir:98 335 ILPDEVLGQKGNNTLIIGN----------LKDAIVLFDRSQYQASWTDYMHFGECLMIAVRQDCRILDYKSAIVIEYDDS 404 (415) T ss_pred EecccccCCCCccEEEEEe----------hhccEEEEeecceEEEEeccccCceEEEEEEEeccEEeccccEEEEEEecc Confidence 7765542111111 22221 00011100 0 1112244567777888889988 677764311 Q ss_pred cCccccccccc Q lcl|NC_015286. 434 TQGSGALTANT 444 (457) Q Consensus 434 ~~~~~~~~~~~ 444 (457) ..+++.+---. T Consensus 405 ~~~~~~~~~~~ 415 (415) T protein:vir:98 405 ERGEGDLGLEA 415 (415) T ss_pred CCCCCccccCC Confidence 11111111111 No 21 >protein:vir:79987 Length: 415 # NCBI annotation: head protein # Family: family:all:21 # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430002;genbank:gi:156604057;genbank:GeneID:5525447 Probab=96.71 E-value=0.0004 Score=39.24 Aligned_cols=340 Identities=16% Similarity=0.132 Sum_probs=136.2 Q ss_pred Cc-------------hHHHHHHhhHhh------ccccccccccchhhhhhh-hhccch-----------HHH-HHHHHHH Q lcl|NC_015286. 1 MS-------------LQQLQEKWAPVL------NHESLPEIEDTHKRGVVA-QLLENQ-----------EKA-ITEEASV 48 (457) Q Consensus 1 ~~-------------~~~l~~~w~~~l------~~~~~~~i~~~~~~~v~~-~~~~n~-----------~~~-~~~~~~~ 48 (457) ++ .+.|.++...+- +.+...++....+..... +...+. ... ..++.+. T Consensus 29 l~~~~~~~~~~~~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (415) T protein:vir:79 29 LNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEKDGTSENNQQSVEVNEARTYRNQANINDLGISIQNTKVTSQEVRD 108 (415) T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhhHHHHHHHHHHhhhhhhhhhHHHHHHH Confidence 11 112222222110 000001111111111110 000000 000 0001111 Q ss_pred hhhhhhccc-cccccccccccccccceeh--hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccc Q lcl|NC_015286. 49 LNETLQTTG-YTGASTATGPVAGFDPVLI--SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEA 125 (457) Q Consensus 49 ~~e~~~~~g-~~~~st~tg~i~~~~P~Lv--~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EA 125 (457) ..+...... ....++++.+-...-|.-+ .+++++.......+++.|.||++..+-+--.|. .+.. ++ T Consensus 109 ~~~~~~~~~~~~~~~~~~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~ 178 (415) T protein:vir:79 109 FTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQ-----SEVA-----AL 178 (415) T ss_pred HHHHHhhhhhhhhccccccccccccchHHHHHHHHHHHhhhhhhhheeeeeccCCceeEEEEee-----cCCc-----cc Confidence 111111110 1111112211111233322 255556677788999999999998875443331 1100 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEE Q lcl|NC_015286. 126 FFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVT 205 (457) Q Consensus 126 lfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~t 205 (457) .+ ..+.+...+ .+...|.+..|.+.|. T Consensus 179 -------~~--------------------------------------------v~E~~~~~~-~~~~~~~~v~~~~~k~- 205 (415) T protein:vir:79 179 -------EK--------------------------------------------VEELEENPE-LAVKPFFQLAYDINTH- 205 (415) T ss_pred -------ee--------------------------------------------eccccccCc-ccccceeeEEeeeeee- Confidence 00 000000000 1112355555555554 Q ss_pred EEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhH Q lcl|NC_015286. 206 VTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRW 285 (457) Q Consensus 206 VtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw 285 (457) +-...+|-||.+|- .+|.+++|.+-|+..|..-+|+.||.-.-+-...+-..+....++ ... .++-- T Consensus 206 ------~~~~~iS~ell~ds----~~~l~~~i~~~l~~~~~~~~~~~il~g~g~g~~~~~~~~~~~~~~-~~~--~~~~~ 272 (415) T protein:vir:79 206 ------RGYFRISREAIEDA----KVNVLQELKLWMARTIAATRNKAIIDVITKGSTGSTSSGFEKEGK-KLE--VKKAK 272 (415) T ss_pred ------EeeehhhHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccccccccccc-ccc--ccccc Confidence 44556999999984 357899999999999999999999986533211110000001111 000 01111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEE Q lcl|NC_015286. 286 SVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVY 365 (457) Q Consensus 286 ~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy 365 (457) ..+....++..+... -.+++.+||++.....|.. ++ ..+|.- ....+.+ ....++| .+++|+ T Consensus 273 ~~~~i~~~~~~~~~~---------~~~~~~~v~n~~~~~~l~~---lk---d~~G~~-l~~~~~~-~~~~~~l-~G~pV~ 334 (415) T protein:vir:79 273 SLDDIKDAINLNVKP---------NYEHNVAIVSQTMFAKLDK---MK---DKLGNY-LIQPDVK-EKTQQRL-LGAKIE 334 (415) T ss_pred chhHHHHHHHhhhhh---------ccCCCEEEEcHHHHHHHHH---hh---ccCCce-eeccCcC-CCCCcee-cceeeE Confidence 123333444444322 2345678899999888765 21 111110 0111111 1223466 356787 Q ss_pred Eecccccccccce-EEEEEecCCCccceeEEcccccc--c--cccccCCccccceeeeeeeeee-eeccccccc------ Q lcl|NC_015286. 366 VDPYSANVADKHY-YVAGYKGTSPYDAGLFYCPYVPL--Q--QVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL------ 433 (457) Q Consensus 366 ~D~y~~~~~~~dY-~~vG~KG~~~~d~glfyaPYv~~--~--~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~------ 433 (457) +.++.|.-...++ +++|- |-.-|+-. . .+...|-..++..+....|++. +.+|-+-.. T Consensus 335 ~~~~~~~~~~~~~~~~~Gd----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~r~d~~v~~~~a~~~~~~~~~ 404 (415) T protein:vir:79 335 ILPDEVLGQKGNNTLIIGN----------LKDAIVLFDRSQYQASWTDYMHFGECLMIAVRQDCRILDYKSAIVIEYDDS 404 (415) T ss_pred EecccccCCCCccEEEEEe----------hhccEEEEeecceEEEEeccccCceEEEEEEEeccEEeccccEEEEEEecc Confidence 7765542111111 22221 00011100 0 1112244567777888889988 677764311 Q ss_pred cCccccccccc Q lcl|NC_015286. 434 TQGSGALTANT 444 (457) Q Consensus 434 ~~~~~~~~~~~ 444 (457) ..+++.+---. T Consensus 405 ~~~~~~~~~~~ 415 (415) T protein:vir:79 405 ERGEGDLGLEA 415 (415) T ss_pred CCCCCccccCC Confidence 11111111111 No 22 >protein:vir:78523 Length: 338 # NCBI annotation: Putative head structural protein # Family: family:all:507 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491585;genbank:gi:157786408;genbank:GeneID:5625675 Probab=96.19 E-value=0.00089 Score=37.31 Aligned_cols=309 Identities=14% Similarity=0.064 Sum_probs=128.3 Q ss_pred HHHHHHHHHHhhhhhhcccccc--cccccccccccccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccC Q lcl|NC_015286. 39 EKAITEEASVLNETLQTTGYTG--ASTATGPVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAER 115 (457) Q Consensus 39 ~~~~~~~~~~~~e~~~~~g~~~--~st~tg~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~ 115 (457) --.++|-+.. ..|-+. ..+++++ .-.-+.+ -.+++.+.+..+...+|.+.||+++..-|.-... .. T Consensus 1 ~~~~~e~~~~------~~~~~~~~~~~~~~~-~liP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~~~ip~~~~----~~ 69 (338) T protein:vir:78 1 MATLNELAPN------TAGSNHQGRLAHVPS-DLLPKEIVGPIFDKAQESSLVLRLGENIPISYGETIIPTTVK----RP 69 (338) T ss_pred CcchHHhhhh------hcccccccceecccc-cccchHHHHHHHHHHHhhchhhhhcceeeccCCceEEEEEec----Cc Confidence 1122222221 111111 1111111 1122222 2356667778888999999999987555443221 00 Q ss_pred CcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccc Q lcl|NC_015286. 116 DPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFR 195 (457) Q Consensus 116 g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~ 195 (457) ++ .+-+. +...-.+|. ...+ T Consensus 70 --------~a-------~~v~~--------------------------------------~~~~~~~Eg-------~~~~ 89 (338) T protein:vir:78 70 --------EV-------GQVGV--------------------------------------GTSNEQREG-------GTKP 89 (338) T ss_pred --------cc-------eeecc--------------------------------------ccccccccc-------cccc Confidence 00 00000 000001111 1122 Q ss_pred cceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccccc---- Q lcl|NC_015286. 196 EMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTAT---- 271 (457) Q Consensus 196 EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~---- 271 (457) +-.-+++.++...+..+-...+|-||.+|-. .|.+++|.+-|+..|...||..||.---+..-. ...++.+ T Consensus 90 ~~~~~f~~v~l~~~k~~~~~~is~ell~ds~----~~~~~~i~~~la~a~~~~~d~~~l~G~g~~~~~-~~~gi~~~~~~ 164 (338) T protein:vir:78 90 LSGTAWDTRSVAPIKLATIVTVSEEFARMNP----SGLYTKLQADLAYAIGRGIDLAVFHGKSPLTGS-ALQGIDTNNVI 164 (338) T ss_pred ccccceeEEEEEEEEEEEeehhhHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccc-ccccccccccc Confidence 2223334444555544555678889999833 578999999999999999999998632110000 0001100 Q ss_pred ceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCC Q lcl|NC_015286. 272 AGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTS 351 (457) Q Consensus 272 ~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~ 351 (457) .+....+....+ ....|....+|-.-......+..+-++++++....|...--+. ..+|. ....+... T Consensus 165 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~L~~~~~l~---d~~g~--~l~~~~~~ 232 (338) T protein:vir:78 165 VNTTNVDYLQTG-------TTPLLDRFLDGYDLVSANTDVDFNGWAADPRYRARLLRSQAYR---DANGN--VDPTRINL 232 (338) T ss_pred cccccccccccc-------chhhHHHHHHHHHHhhhhccccceEEEEchHHHHHHHHHhhhc---cCCCc--eeeccccc Confidence 000011100000 0111222233333333445567788999999887775421110 01111 00011111 Q ss_pred ceEEEEecCceEEEEecccccc-------------cccceEEEEEecCCCccceeEEccccccccccccCCcc-----c- Q lcl|NC_015286. 352 STLVGTLNGRIKVYVDPYSANV-------------ADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDT-----F- 412 (457) Q Consensus 352 ~~~~G~l~~~~~vy~D~y~~~~-------------~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s-----~- 412 (457) ....++|. +++|+++.+.|.+ .++.++++|..+..+.+ ..+|.-. ....||.. | T Consensus 233 ~~~~~~l~-G~PV~~~~~ip~~~~~~~~~~~~~~~gdfs~~~~~~~~~~~i~----~~~~~~~--~~~~~~~~~~~~~~~ 305 (338) T protein:vir:78 233 AASAGDLL-GLPVQFGKAVGGDLGAATDSKVRVVGGDFSQLKYGFADEIRVK----MSDTATL--TDNTSPTPQTVSMWQ 305 (338) T ss_pred CCCCceee-eeeEEEccccCccccccCCcccEEEEEecceEEEEeecccEEE----Eeecccc--cccccccccchhhhh Confidence 12235664 4599988776532 12222223333222111 1111000 01113321 1 Q ss_pred --cceeeeeeeeee-eeccccccccCcccccccccchhe Q lcl|NC_015286. 413 --QPKIGFKTRYGM-VSNPFAQGLTQGSGALTANTNRYY 448 (457) Q Consensus 413 --qP~~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~n~~~ 448 (457) |=.+=...|++. +.||-+-. ++.+++..++ T Consensus 306 ~~~~~~r~~~r~d~~v~~~~a~~------~l~~~~~~~~ 338 (338) T protein:vir:78 306 TNQIAILIEVTFGWLLGDKQAFV------KFVDDEDPDA 338 (338) T ss_pred cCcEEEEEEEEeccEeecccceE------EEecccCCCC Confidence 112233568886 67765321 1222222222 No 23 >protein:vir:1433 Length: 435 # NCBI annotation: putative major capsid protein # Family: family:all:21 # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536362;genbank:gi:17975167;genbank:GeneID:929171 Probab=95.93 E-value=0.0012 Score=36.51 Aligned_cols=335 Identities=15% Similarity=0.126 Sum_probs=119.1 Q ss_pred CchHHHHHHhhHhhcccc-cc-------ccccchhhhhhh---hh--ccchHHHHHHHHHHhhhh---hhcccccccccc Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHES-LP-------EIEDTHKRGVVA---QL--LENQEKAITEEASVLNET---LQTTGYTGASTA 64 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~-~~-------~i~~~~~~~v~~---~~--~~n~~~~~~~~~~~~~e~---~~~~g~~~~st~ 64 (457) |+.++|+|+|+.+++.-. +- ++....++++-. .+ |++|-+.+.+..+..... ..........-. T Consensus 1 M~i~eL~e~r~~~~~~~~~l~~~~~e~~~lt~ee~~~~~~l~~ei~~l~~~I~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 80 (435) T protein:vir:14 1 MNVNELRRERAAVNQRVQALAQIEVGGTALSVEQQAEFDQLSSKFSELTAQIERAEAAERMAAAAAVPVDPNPTAVAAPA 80 (435) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhcc Confidence 999999999998765221 10 111111111111 10 111111111111110000 000000000000 Q ss_pred cccc----------------------------------------------------ccccceehh------hhHHHhhhH Q lcl|NC_015286. 65 TGPV----------------------------------------------------AGFDPVLIS------LIRRSMPQL 86 (457) Q Consensus 65 tg~i----------------------------------------------------~~~~P~Lv~------l~RRa~~~L 86 (457) ...+ ......|++ ++.+..+.. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~gg~~vP~~~~~~ii~~l~~~~ 160 (435) T protein:vir:14 81 AAPVHAQPKALEVKGAKMARMVRALAAARGDAQLASKLAIERGFGEEVAMSLNTLSPGAGGVLVPENLSSEVIELLRPKS 160 (435) T ss_pred ccccccccchhhhhHHHHHHHHHHHHhhcchhhHHHHHHHhhhhhhhhhhhcccCCcCCCccccchhHHHHHHHHHhhhc Confidence 0000 000000110 111111222 Q ss_pred hhhhc-eeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccccccccccccccccccccccccccc Q lcl|NC_015286. 87 IAYDI-AGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPA 165 (457) Q Consensus 87 I~~DI-~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~ 165 (457) +..++ +=+.||+... +-| |... T Consensus 161 ~i~~~~~~~~~~~~~~-~~~---------------------------------------------------p~~~----- 183 (435) T protein:vir:14 161 VVRKLGARTLPLSNGN-ITI---------------------------------------------------PRLK----- 183 (435) T ss_pred hhhhhcceeeecCCCc-eEE---------------------------------------------------EEEe----- Confidence 22221 0011111000 000 0000 Q ss_pred ccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHH Q lcl|NC_015286. 166 GTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEI 245 (457) Q Consensus 166 gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEI 245 (457) +....+. .+| +..+++-.-++++++..++.-+-....|-||.+|-. .+.+.|+.|.+-|+..| T Consensus 184 ~~~~a~~--------v~E-------~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds~--~~~~l~~~i~~~l~~ai 246 (435) T protein:vir:14 184 GGAIVGY--------IGA-------DTDIPTTQQQFDDLKLTAKKMAALVPIANDLIKYAG--VNPNVDQIVVGDLTAAI 246 (435) T ss_pred CCcceee--------ecc-------CccccccccceeEEEeeeEEEEEeehhhHHHHHhhc--cCHHHHHHHHHHHHHHH Confidence 0000000 111 012333344456666666666667789999999932 12347788888888888 Q ss_pred HHHhhHHHHhhhhheeeeeeccccccceeEeecccc---------chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEE Q lcl|NC_015286. 246 LAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDS---------NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNIL 316 (457) Q Consensus 246 mlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~---------~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~ 316 (457) ...+|+-||.- .-.+-...|++...... ..-.....+..|+..+. .--.......+ T Consensus 247 ~~~~d~a~l~G--------~G~~~~p~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~ 311 (435) T protein:vir:14 247 GAREDKAFIRD--------DGTANTPKGLRFWALPSNVITASDASTLQKIETDLGKVILALE-------NADANLTQPGW 311 (435) T ss_pred HHHHHHHhhcc--------CCCCccccceeecccccceeccccccchhhHHHHHHHHHHHhh-------hccccccCCEE Confidence 88888888742 10111234443321111 01111111122222211 11112233456 Q ss_pred EEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEeccccccc------------ccceEEEEEe Q lcl|NC_015286. 317 ICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVA------------DKHYYVAGYK 384 (457) Q Consensus 317 i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~------------~~dY~~vG~K 384 (457) |+++.....|.. +. ..+|. ....+.+ .|+|. +++|+++.+.|.+. ++.++++|.. T Consensus 312 v~n~~~~~~L~~---lk---d~~G~--~l~~~~~----~g~l~-G~Pv~~~~~~p~~~~~~~~~~~i~~gd~s~~~i~~~ 378 (435) T protein:vir:14 312 IMAPRTFRFLEG---LR---DGNGN--KVYPELA----NGMLK-GYPVGKTTQVPINLGETGKESEIYFTDFGDVFIGEE 378 (435) T ss_pred EEcHHHHHHHHH---hh---ccCCc--eeccCCC----CCeee-cceeEeeccccccccCCCccceEEEeecccEEEEEe Confidence 889999988876 22 11221 1112222 35664 47888887765321 1122334444 Q ss_pred cCCCccceeEEccccccccccccCCccc---cceeeeeeeeee-eeccccccccCccccccccc Q lcl|NC_015286. 385 GTSPYDAGLFYCPYVPLQQVRAINPDTF---QPKIGFKTRYGM-VSNPFAQGLTQGSGALTANT 444 (457) Q Consensus 385 G~~~~d~glfyaPYv~~~~~~~~Dp~s~---qP~~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~ 444 (457) +..+ +-..||..........-..| |=.+=...|++. +.+|-+...-++ +--|. T Consensus 379 ~~~~----~~~~~~~~~~~~~~~~~~~f~~~~~~~r~~~r~d~~~~~~~a~~~l~~---~~~~~ 435 (435) T protein:vir:14 379 ETLE----IDYSKEATYKDADGHMVSAFQRDQTLIRVIAKNDFGPRHVESIAVLAG---VAWGA 435 (435) T ss_pred cccE----EEEeccccccccccchhhhhhcChhheeeeeeeCceeecccceEEEec---CCCCC Confidence 4333 33344432111100000000 112223445554 334432211000 00000 No 24 >protein:vir:8420 Length: 477 # NCBI annotation: gp15 # Family: family:all:21 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818316;genbank:gi:29566752;genbank:GeneID:1260033 Probab=95.90 E-value=0.0013 Score=36.42 Aligned_cols=346 Identities=14% Similarity=0.090 Sum_probs=134.1 Q ss_pred Cc-hHHHHH-----------HhhH-hhccccccccccchhhhhhhhhccc---hHH------HHHHHHHHh-hhh----- Q lcl|NC_015286. 1 MS-LQQLQE-----------KWAP-VLNHESLPEIEDTHKRGVVAQLLEN---QEK------AITEEASVL-NET----- 52 (457) Q Consensus 1 ~~-~~~l~~-----------~w~~-~l~~~~~~~i~~~~~~~v~~~~~~n---~~~------~~~~~~~~~-~e~----- 52 (457) -. .++|.+ .... -...+..+ ....++......+.+ +.+ ...+..+.. ... T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (477) T protein:vir:84 67 DEQIRELESEIERSGKLEAETKTVRKATVEVNE--ALTYEKGNGQSYFRDLAMQTVGMADEPAKERLRRHMVDVESDKEI 144 (477) T ss_pred HHHHHHHHHHHHHhhcchhhhhhhccccccccc--chhhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhhhhhhhH Confidence 00 000000 0000 00000000 000010000000000 000 000000000 000 Q ss_pred -h----hccccccccccccccccccceeh--hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccc Q lcl|NC_015286. 53 -L----QTTGYTGASTATGPVAGFDPVLI--SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEA 125 (457) Q Consensus 53 -~----~~~g~~~~st~tg~i~~~~P~Lv--~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EA 125 (457) . ...-....++++.+-...-|..+ .++...-+..+..+++++.||++.+|-+-=.|..- ++ ..+ T Consensus 145 ~~~~~~~~~~~~~~~~~~~gg~lv~~~~~~~~ii~~l~~~~~i~~~~~~~~~~~~~~~~~ip~~~~----~~-----~~a 215 (477) T protein:vir:84 145 RKIAKVGEEYRDLDRNGGTGGYAVPPLWMMNRFIELARAGRTYANLCPTEPLPGGTSSINIPKILT----GT-----STA 215 (477) T ss_pred HHHHHhhhhhccccccCCCcceeeccchhHHHHHHHhhhcchHHHhhceeeecCCcceeEEEEEec----Cc-----cee Confidence 0 00000111111111111223322 25555557778889999999999888542222111 10 000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEE Q lcl|NC_015286. 126 FFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVT 205 (457) Q Consensus 126 lfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~t 205 (457) . + ..++... .....++...+++.++ T Consensus 216 ~-------~--------------------------------------------~~Eg~~~----~~~~~~~s~~~f~~i~ 240 (477) T protein:vir:84 216 I-------Q--------------------------------------------AADNAAL----TAPSAHEVDLTDGFVQ 240 (477) T ss_pred e-------e--------------------------------------------eccCccc----ccccccccccceeeEE Confidence 0 0 0000000 0112344444557788 Q ss_pred EEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc--ccceeEeecc---- Q lcl|NC_015286. 206 VTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT--ATAGVFDLDV---- 279 (457) Q Consensus 206 VtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v--~~~Gv~Dl~~---- 279 (457) ..+|.-+-...+|-||.+|-. .|.++.|.+-|+..|..-|++.||.- .|+ ...|++.... T Consensus 241 ~~~~k~~~~~~iS~ell~ds~----~~l~~~i~~~l~~~~~~~~d~~~l~G----------~Gt~~~p~Gi~~~~~~~~~ 306 (477) T protein:vir:84 241 ANVKTIAGQQGIAIQLLDQAA----VSVDEFVFRDLAADYANKLNVQVISG----------TGSNNQVVGVRATAGITQV 306 (477) T ss_pred EeeeeEEeeeHHHHHHHhccc----hhHHHHHHHHHHHHHHHHHHHHHhcc----------CCCCCccceeeeccccccc Confidence 888888888889999999943 56899999999999999999998853 111 2355553321 Q ss_pred --cc-chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhh----CCcceecccccccccc-cccccCC Q lcl|NC_015286. 280 --DS-NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGM----AGVLDYSPALNGNNAL-TGVDDTS 351 (457) Q Consensus 280 --~~-~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~----sg~l~~~~~~~~~~~~-~~~d~~~ 351 (457) .. ..-|. ....+ +.-...+..-.....+-.+..+|+++.....|.. .|..-+.|...+.+.. ...+.-. T Consensus 307 ~~~~~~~t~~--~~~~~-~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~lkd~~G~~l~~~~~~~~~~~~~~~~~~~ 383 (477) T protein:vir:84 307 TATSAGSALE--KHQII-YQKIADAIQRVHTSRFLEPEVIVMHPRRWASFHAIFAGDDRPLIVPSGPGFNNLGVLTEVAS 383 (477) T ss_pred cccccccchh--hHHHH-HHHHHHHHhhccccccCCccEEEEcHHHHHHHHHhhccCCCeeeecCccccccccccccccc Confidence 11 01111 01111 1111222222222333345667778776655433 3333233332211111 1112223 Q ss_pred ceEEEEecCceEEEEeccccccc----ccceEEEEEecCCCc-cc--eeEEccccccccccccCCccccceeeeeeeeee Q lcl|NC_015286. 352 STLVGTLNGRIKVYVDPYSANVA----DKHYYVAGYKGTSPY-DA--GLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM 424 (457) Q Consensus 352 ~~~~G~l~~~~~vy~D~y~~~~~----~~dY~~vG~KG~~~~-d~--glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l 424 (457) ....|+|. +++|+++++.|.+. +..-+++|--.+.-. +. .+.-.||.- .-...+.|.+ ||+ T Consensus 384 ~~~~~~l~-G~pVv~s~~~p~~~~~~~d~~~i~~gd~~~~~i~~~~~~~~~~~~~~----------~~~~~~~~~v-~~~ 451 (477) T protein:vir:84 384 QRVVGQMH-GLPVVTDPTLPTTLGTGTDQDVIHVLRASDLALFESSVRMRALQETR----------AENLSVLLQV-YGY 451 (477) T ss_pred ccccchhc-ccceEecCcccccccccCCcceEEEEEeceEEEEeeceeEEeccccc----------cccceeeeee-hhh Confidence 34467774 67999999887431 222344444321100 00 122222211 1112222211 221 Q ss_pred -----eeccccccccCcccccccccch----he Q lcl|NC_015286. 425 -----VSNPFAQGLTQGSGALTANTNR----YY 448 (457) Q Consensus 425 -----~~nP~~~~~~~~~~~~~~~~n~----~~ 448 (457) +-+|-+-. ++.|+.. |+ T Consensus 452 ~~~~~~r~~~afv-------~~t~~~~~~~~~~ 477 (477) T protein:vir:84 452 LAFTAARFPQSVV-------EIGGTALTAPTFA 477 (477) T ss_pred hhhhhhccccceE-------EeecccccccccC Confidence 11332111 1111110 22 No 25 >protein:vir:3845 Length: 395 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050151;swissprot:trembl:q9t1f6;genbank:gi:9633043;uniprot:Q9T1F6;genbank:GeneID:1262163 Probab=95.40 E-value=0.0021 Score=35.22 Aligned_cols=325 Identities=13% Similarity=0.076 Sum_probs=136.9 Q ss_pred CchHHHHHHhhHhhccccccccccchhhhhhhhh-------ccch------HHHHHH----HHHHhhhh----------- Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRGVVAQL-------LENQ------EKAITE----EASVLNET----------- 52 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~-------~~n~------~~~~~~----~~~~~~e~----------- 52 (457) |+.++|+++|+-+.+ .+-++.+..++.....- +|.. -+.+.+ .+....+. T Consensus 1 M~~~eL~~~~~~~~~--~~~~l~e~~~~~~~~~~~~~~~~~~ee~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (395) T protein:vir:38 1 MNINQLKDAFDMAGQ--KVQDLEDKRAQFAIDLGNDASSHSVDDINKLNASLKNAKMAQELAKSAYEDARANLNAEPVNK 78 (395) T ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc Confidence 999999999988643 23333322222111100 0000 000000 00000000 Q ss_pred -------------------h-hccccccccc-cccccccccceeh--hhhHHHhhhHhhhhceeeecCCCcceeeeEeee Q lcl|NC_015286. 53 -------------------L-QTTGYTGAST-ATGPVAGFDPVLI--SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRT 109 (457) Q Consensus 53 -------------------~-~~~g~~~~st-~tg~i~~~~P~Lv--~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRs 109 (457) . ........++ ++++-...=|.-+ .+++......+..+++.++||++++|-+-=.+ T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~vP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 157 (395) T protein:vir:38 79 KPLPVKDGKPDAQAMKNQFVKDFKNLVTSGTTGTGNAGLTIPEDIQLQIRTLTRSFTSLESLANVENVTTSHGSRVYEK- 157 (395) T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHhhccCccCCCceecchhHhhHHHHHHHhhcchhhhcceeeccCCcceEEEEe- Confidence 0 0000111111 1211111123222 25555556778889999999999987641111 Q ss_pred eecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCC Q lcl|NC_015286. 110 NYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSS 189 (457) Q Consensus 110 rY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s 189 (457) -.+ .++. + . .....+...+ + T Consensus 158 -~~~-~~~~------a-------~--------------------------------------------~v~E~~~~~~-~ 177 (395) T protein:vir:38 158 -LAD-ITPL------K-------D--------------------------------------------LDDESALIGD-N 177 (395) T ss_pred -ecc-CCcc------c-------c--------------------------------------------cccccccccc-c Confidence 100 0000 0 0 0000011100 1 Q ss_pred CCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc Q lcl|NC_015286. 190 SNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT 269 (457) Q Consensus 190 ~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v 269 (457) ....|.+..|+..|..+ ...+|-||.+|- +.|-++.|.+-|+..|..-||+.||.-.=+ +. T Consensus 178 ~~~~f~~v~~~~~k~~~-------~~~iS~ell~ds----~~~l~~~i~~~la~~~~~~~~~~il~g~g~--------~~ 238 (395) T protein:vir:38 178 DDPELTVVKYLIHRYAG-------ITTVTNTLLKDT----VDNIIQWLVNWAAKKDVVTRNAKILEVMGK--------AP 238 (395) T ss_pred cccceeeEEeeeeeeEe-------ehhhHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------cc Confidence 12345555555555554 445999999983 356788899999999999999888863211 11 Q ss_pred ccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccccccccc Q lcl|NC_015286. 270 ATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDD 349 (457) Q Consensus 270 ~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~ 349 (457) ...|+.++ +....+++..... --+ ....+||++.....|.. +.-+ +|. .....+ T Consensus 239 ~~~~~~~~----------~~i~~~~~~~l~~-------~~~-~~a~~v~n~~~~~~L~~---lkd~---~G~--~l~~~~ 292 (395) T protein:vir:38 239 KKPTISQF----------DNIKDLENNTLDP-------AIE-STSSFITNQSGYNILSK---VKDA---DGR--YLMQPD 292 (395) T ss_pred cccccccH----------HHHHHHHHHhhhh-------hhc-CCCEEEEcHHHHHHHHH---hhcc---CCc--eeeccC Confidence 11222221 1112222221111 112 22357899999888865 2111 111 111111 Q ss_pred CCceEEEEecCceEEEEecc--ccccccc---------ceEEEEEecCCCccceeEEccccccccccccCCccccceeee Q lcl|NC_015286. 350 TSSTLVGTLNGRIKVYVDPY--SANVADK---------HYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGF 418 (457) Q Consensus 350 ~~~~~~G~l~~~~~vy~D~y--~~~~~~~---------dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~ 418 (457) ......++|. +++|++... .|...+. +|++++.+... .+=+.++. ..+-...+=.+-+ T Consensus 293 ~~~~~~~~l~-G~pV~~~~~~~~~~~~~~~~i~~gd~~~~~~i~~~~~~----~i~~~~~~------~~~~~~~~~~~r~ 361 (395) T protein:vir:38 293 VTSPDKYLID-GKPVIRIADKWLPDVSGSHPLYFGDLKQGITLFDRQQM----QIDTTNVG------AGSFEHDTTKLRF 361 (395) T ss_pred cCCCCcceec-cceeEEecccccCcCCCcceEEEEeccccEEEEEecce----EEEEeccc------cchhhcCceEEEE Confidence 1112234564 456666432 2211110 11112211110 11111110 0011233345556 Q ss_pred eeeeee-eecccc-------ccccCccccccccc Q lcl|NC_015286. 419 KTRYGM-VSNPFA-------QGLTQGSGALTANT 444 (457) Q Consensus 419 ~tRY~l-~~nP~~-------~~~~~~~~~~~~~~ 444 (457) ..||+. +.+|-+ ...++.++..-.|+ T Consensus 362 ~~r~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 395 (395) T protein:vir:38 362 IDRFDVQLIDDGAFAAASFKTVANQAQGTAGTGK 395 (395) T ss_pred EEeeccEEecccceEEEEeecccCCCCCccCCCC Confidence 667776 445542 23355566666666 No 26 >protein:vir:7409 Length: 408 # NCBI annotation: major structural protein # Family: family:all:21 # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839926;genbank:gi:30089896;genbank:GeneID:1260683 Probab=95.04 E-value=0.0029 Score=34.49 Aligned_cols=329 Identities=11% Similarity=0.101 Sum_probs=128.8 Q ss_pred CchHHHHHHhhHhhcccc-cc-c----cccch--h---hhhhhhh---ccc---hHHHHHHHHHHhhhh----------- Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHES-LP-E----IEDTH--K---RGVVAQL---LEN---QEKAITEEASVLNET----------- 52 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~-~~-~----i~~~~--~---~~v~~~~---~~n---~~~~~~~~~~~~~e~----------- 52 (457) |+.++|.++|..+.+.-. +- + ..+.. . +.+.+.+ .+. +++.+.+..+...+. T Consensus 5 m~i~el~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (408) T protein:vir:74 5 LTVNQLNEAWIASGDKVTDFNDQINMALNDDNFSAEAMSELKNKRDNEKVRRDALREQLVEAQAEQVVNMREEEKGPLNK 84 (408) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc Confidence 889999999988643211 00 0 00000 0 0000110 110 000011000000000 Q ss_pred -------------h----hcccc---------ccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeE Q lcl|NC_015286. 53 -------------L----QTTGY---------TGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFA 106 (457) Q Consensus 53 -------------~----~~~g~---------~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFA 106 (457) . ...+. ...++..|.+.--....-.+++.+.+.....+++.++||++.+|-+-- T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~gg~~vP~~~~~~Ii~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (408) T protein:vir:74 85 SENELKDKFVKDFVNMVRNPMAFLNTVSSKTETSGSDSAAGLTIPQDIRTMINTLVRQYDSLQQYVRVESVSTSSGSRVY 164 (408) T ss_pred hhhhhHHHHHHHHHHHHhcchhhhhhhhhhhhcccccCCCceeechhHhhHHHHHHhhhcchhhhcceeeccCCcceEEE Confidence 0 00000 001111111111111111344445566678899999999998875532 Q ss_pred eeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccC Q lcl|NC_015286. 107 MRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALD 186 (457) Q Consensus 107 MRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg 186 (457) .+- .+ .++ .+ + -.+|. T Consensus 165 ~~~--~~-~~~------~~---------------------------------------------~--------~v~E~-- 180 (408) T protein:vir:74 165 EKW--TD-VTP------LK---------------------------------------------A--------MDEED-- 180 (408) T ss_pred Eee--cC-Ccc------cc---------------------------------------------c--------ccccc-- Confidence 221 10 000 00 0 00010 Q ss_pred CCCCCcccccce-eEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeee Q lcl|NC_015286. 187 DSSSNTAFREMG-FSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGA 265 (457) Q Consensus 187 ~~s~~~~f~EMs-FsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk 265 (457) ...++.+ .+++++++..+.-+-...+|-||.+|- .+|.++.|.+-|+..|..-+|+.||.-. T Consensus 181 -----~~~~~~~~~~~~~i~~~~~k~~~~~~iS~ell~ds----~~~l~~~i~~~l~~~~~~~~d~~il~G~-------- 243 (408) T protein:vir:74 181 -----GKIPDLDNPRLTIIKYLIKRYAGIITATNTLLKDT----AENILAWLSSWIAKKVVVTRNQAIIAAM-------- 243 (408) T ss_pred -----cccccccccceeeEEeeeeeEEeeehhHHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHHHhhcc-------- Confidence 0112211 223444555555555566999999983 3578999999999999999999888631 Q ss_pred ccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccccc Q lcl|NC_015286. 266 QNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALT 345 (457) Q Consensus 266 ~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~ 345 (457) -.+....++.++++ ...+++..... .-+.. -.+||++.....|.. +. ..+|. .. T Consensus 244 G~~~~~~~~~~~~~----------i~~~~~~~l~~-------~~~~~-a~~v~n~~~~~~l~~---lk---d~~G~--~l 297 (408) T protein:vir:74 244 GTVPKKPTIANFDD----------VITMINTSVDP-------AIIAT-SSLLTNQSGLNKLAL---VK---TAEGK--YL 297 (408) T ss_pred cccccccccccHHH----------HHHHHHHhhhh-------hhcCC-CEEEEcHHHHHHHHH---hh---cCCCc--eE Confidence 11122223332211 11111111111 11222 346789999888875 21 11111 11 Q ss_pred ccccCCceEEEEecCceEEEE--ecccccccccce-EEEE---------EecCCCccceeEEccccccccccccCCcccc Q lcl|NC_015286. 346 GVDDTSSTLVGTLNGRIKVYV--DPYSANVADKHY-YVAG---------YKGTSPYDAGLFYCPYVPLQQVRAINPDTFQ 413 (457) Q Consensus 346 ~~d~~~~~~~G~l~~~~~vy~--D~y~~~~~~~dY-~~vG---------~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~q 413 (457) ...+......++| .+++||+ |...|.....++ +++| -++.. .+=..||.- -+-...+ T Consensus 298 ~~~~~~~~~~~~l-~G~pV~~~~~~~~~~~~~~~~~i~~gd~~~~~~~~~~~~~----~i~~~~~~~------~~f~~~~ 366 (408) T protein:vir:74 298 LEPDPTKPNSYLI-KGKQVIVVADRWLPNSGSTVYPLYYGDMSQAITLFDRENM----SLLPTNIGA------GAFETDT 366 (408) T ss_pred eccCcCCCCCcee-cceeeEEecCcccccccCCcceEEEEehhccEEEEEecce----EEEEecccc------chhhcce Confidence 1111111123466 3456665 323332111111 2222 11111 111222211 0113455 Q ss_pred ceeeeeeeeee-eecccccc------ccCcccccccccc-hh Q lcl|NC_015286. 414 PKIGFKTRYGM-VSNPFAQG------LTQGSGALTANTN-RY 447 (457) Q Consensus 414 P~~g~~tRY~l-~~nP~~~~------~~~~~~~~~~~~n-~~ 447 (457) -.+-+..||+. +.+|-+-. .....+..-..+- .- T Consensus 367 ~~~r~~~r~d~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 408 (408) T protein:vir:74 367 TKIRVIDRFDVKATDSEALVAGSFTAIADQVGNFKTTTSTAV 408 (408) T ss_pred eeEEEEEeeCcEEecccceEEEEeecccCCCCCCCCCccccC Confidence 56666677776 55664210 0000000000000 00 No 27 >protein:vir:4600 Length: 415 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058445;genbank:gi:9635171;genbank:GeneID:1262708 Probab=94.84 E-value=0.0034 Score=34.14 Aligned_cols=341 Identities=15% Similarity=0.108 Sum_probs=135.7 Q ss_pred Cch-------------HHHHHHhhHhhcc------ccccccccchhhhhh--------------hhhccchHHHHHHHHH Q lcl|NC_015286. 1 MSL-------------QQLQEKWAPVLNH------ESLPEIEDTHKRGVV--------------AQLLENQEKAITEEAS 47 (457) Q Consensus 1 ~~~-------------~~l~~~w~~~l~~------~~~~~i~~~~~~~v~--------------~~~~~n~~~~~~~~~~ 47 (457) ++. +.|.++..-+-.. +.............. ...+.+.... .++.+ T Consensus 29 ~~~~~~e~~~~~~~ev~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 107 (415) T protein:vir:46 29 LNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEKDRTSENNQQSVEVNEARTYRNQANINDLGISIQNTKVT-SQEVR 107 (415) T ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHhhhhhhhh-HHHHH Confidence 111 1122222111000 000000000000000 0000000000 01111 Q ss_pred Hhhhhhhc-ccccccccccccccccccee--hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccc Q lcl|NC_015286. 48 VLNETLQT-TGYTGASTATGPVAGFDPVL--ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDE 124 (457) Q Consensus 48 ~~~e~~~~-~g~~~~st~tg~i~~~~P~L--v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~E 124 (457) .+.+.... .......+++.+-...-|.. -.+++.+.+.....+++.+.||+++++-+.-.+. .+.. + T Consensus 108 ~~~~~~~~~~~~~~~~~~t~~g~~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~ 177 (415) T protein:vir:46 108 DFTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQ-----SEVA-----A 177 (415) T ss_pred HHHHHHhhhhhhhhccccccCCcccccHHHHHHHHHHHHhhhhhhhhcceeeccCCceeEEEEEe-----cCCc-----c Confidence 11111000 00111111121111122222 2356666777888999999999998875533321 1100 0 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccce-eEEEE Q lcl|NC_015286. 125 AFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMG-FSIEK 203 (457) Q Consensus 125 AlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMs-FsIeK 203 (457) + .+ .+| +...++.+ -++++ T Consensus 178 ~-------~~----------------------------------------------v~E-------g~~~~~~~~~~~~~ 197 (415) T protein:vir:46 178 L-------EK----------------------------------------------VEE-------LEENPELAVKPFFQ 197 (415) T ss_pred e-------ee----------------------------------------------ccc-------ccccccccccceee Confidence 0 00 001 01122222 23455 Q ss_pred EEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccccc-ceeEeeccccc Q lcl|NC_015286. 204 VTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTAT-AGVFDLDVDSN 282 (457) Q Consensus 204 ~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~-~Gv~Dl~~~~~ 282 (457) ++..++..+-...+|-||.+|-. .|.+++|.+-|+..|..-+|+.||.-.-+-...+....... ...... +. T Consensus 198 v~~~~~k~~~~~~iS~ell~ds~----~~l~~~i~~~l~~~i~~~~d~~il~g~g~g~~~~~~~~~~~~~~~~~~--~~- 270 (415) T protein:vir:46 198 LAYDINTHRGYFRISREAIEDAK----VNVLQELKLWMARTIAATRNKAIIDVITKGSTGSTSSGFEKEGKKLEV--KK- 270 (415) T ss_pred EEeeeeeeEeeehhhHHHHhhch----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccceecc--cc- Confidence 55555555556689999999843 57899999999999999999999986533221111100000 011100 00 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCce Q lcl|NC_015286. 283 GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRI 362 (457) Q Consensus 283 grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~ 362 (457) --..+....++.++.. -.++.+.+|+++.....|.. +. ..+|.- ....+.+. ...++|. ++ T Consensus 271 -~~~~~~i~~~~~~~~~---------~~~~~~~~v~n~~~~~~L~~---lk---d~~G~~-i~~~~~~~-~~~~~l~-G~ 331 (415) T protein:vir:46 271 -AKSLDDIKDAINLNVK---------PNYEHNVAIVSQTMFAKLDK---MK---DKLGNY-LIQPDVKE-KTQQRLL-GA 331 (415) T ss_pred -ccchHHHHHHHHhhhh---------hccCCCEEEEcHHHHHHHHH---hh---ccCCCe-eeccCcCC-CCCcccc-ce Confidence 0112223344444432 23456778899999888865 21 111110 01111111 1235664 45 Q ss_pred EEEEecccccccccc-eEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc------c Q lcl|NC_015286. 363 KVYVDPYSANVADKH-YYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL------T 434 (457) Q Consensus 363 ~vy~D~y~~~~~~~d-Y~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~------~ 434 (457) +|++..+.|.-...+ -+++|-- . .+ +....... ..+...|-.++|-.+-...|++. +.+|-+-.. . T Consensus 332 pV~~~~~~~~~~~~~~~~~~gd~---~-~~-~~~~~~~~-~~v~~~~~~~~~~~~~~~~r~d~~v~~~~a~~~~~~~~~~ 405 (415) T protein:vir:46 332 KIEILPDEVLGQKGNNTLIIGNL---K-DA-IVLFDRSQ-YQASWTDYMHFGECLMIAVRQDCRILDYKSAIVIEYDDSE 405 (415) T ss_pred eeEEeccccccCCCccEEEEEeh---h-cc-EEEEeecc-eEEEeeccccCceEEEEEEEeccEEeccccEEEEEeeccC Confidence 777665554211111 1222210 0 00 00000000 01112244556667777889988 777753211 1 Q ss_pred Cccccccccc Q lcl|NC_015286. 435 QGSGALTANT 444 (457) Q Consensus 435 ~~~~~~~~~~ 444 (457) .+++.+---. T Consensus 406 ~~~~~~~~~~ 415 (415) T protein:vir:46 406 RGEGDLGLEA 415 (415) T ss_pred CCCCCccCCC Confidence 1111111111 No 28 >protein:vir:4700 Length: 415 # NCBI annotation: phi PVL ORF 7 homologue # Family: family:all:21 # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061632;genbank:gi:9635719;genbank:GeneID:1262976 Probab=94.84 E-value=0.0034 Score=34.14 Aligned_cols=341 Identities=15% Similarity=0.108 Sum_probs=135.7 Q ss_pred Cch-------------HHHHHHhhHhhcc------ccccccccchhhhhh--------------hhhccchHHHHHHHHH Q lcl|NC_015286. 1 MSL-------------QQLQEKWAPVLNH------ESLPEIEDTHKRGVV--------------AQLLENQEKAITEEAS 47 (457) Q Consensus 1 ~~~-------------~~l~~~w~~~l~~------~~~~~i~~~~~~~v~--------------~~~~~n~~~~~~~~~~ 47 (457) ++. +.|.++..-+-.. +.............. ...+.+.... .++.+ T Consensus 29 ~~~~~~e~~~~~~~ev~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 107 (415) T protein:vir:47 29 LNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEKDRTSENNQQSVEVNEARTYRNQANINDLGISIQNTKVT-SQEVR 107 (415) T ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhHHHHHHHHHHHhhhhhhhh-HHHHH Confidence 111 1122222111000 000000000000000 0000000000 01111 Q ss_pred Hhhhhhhc-ccccccccccccccccccee--hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccc Q lcl|NC_015286. 48 VLNETLQT-TGYTGASTATGPVAGFDPVL--ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDE 124 (457) Q Consensus 48 ~~~e~~~~-~g~~~~st~tg~i~~~~P~L--v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~E 124 (457) .+.+.... .......+++.+-...-|.. -.+++.+.+.....+++.+.||+++++-+.-.+. .+.. + T Consensus 108 ~~~~~~~~~~~~~~~~~~t~~g~~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~ 177 (415) T protein:vir:47 108 DFTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQ-----SEVA-----A 177 (415) T ss_pred HHHHHHhhhhhhhhccccccCCcccccHHHHHHHHHHHHhhhhhhhhcceeeccCCceeEEEEEe-----cCCc-----c Confidence 11111000 00111111121111122222 2356666777888999999999998875533321 1100 0 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccce-eEEEE Q lcl|NC_015286. 125 AFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMG-FSIEK 203 (457) Q Consensus 125 AlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMs-FsIeK 203 (457) + .+ .+| +...++.+ -++++ T Consensus 178 ~-------~~----------------------------------------------v~E-------g~~~~~~~~~~~~~ 197 (415) T protein:vir:47 178 L-------EK----------------------------------------------VEE-------LEENPELAVKPFFQ 197 (415) T ss_pred e-------ee----------------------------------------------ccc-------ccccccccccceee Confidence 0 00 001 01122222 23455 Q ss_pred EEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccccc-ceeEeeccccc Q lcl|NC_015286. 204 VTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTAT-AGVFDLDVDSN 282 (457) Q Consensus 204 ~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~-~Gv~Dl~~~~~ 282 (457) ++..++..+-...+|-||.+|-. .|.+++|.+-|+..|..-+|+.||.-.-+-...+....... ...... +. T Consensus 198 v~~~~~k~~~~~~iS~ell~ds~----~~l~~~i~~~l~~~i~~~~d~~il~g~g~g~~~~~~~~~~~~~~~~~~--~~- 270 (415) T protein:vir:47 198 LAYDINTHRGYFRISREAIEDAK----VNVLQELKLWMARTIAATRNKAIIDVITKGSTGSTSSGFEKEGKKLEV--KK- 270 (415) T ss_pred EEeeeeeeEeeehhhHHHHhhch----HHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccceecc--cc- Confidence 55555555556689999999843 57899999999999999999999986533221111100000 011100 00 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCce Q lcl|NC_015286. 283 GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRI 362 (457) Q Consensus 283 grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~ 362 (457) --..+....++.++.. -.++.+.+|+++.....|.. +. ..+|.- ....+.+. ...++|. ++ T Consensus 271 -~~~~~~i~~~~~~~~~---------~~~~~~~~v~n~~~~~~L~~---lk---d~~G~~-i~~~~~~~-~~~~~l~-G~ 331 (415) T protein:vir:47 271 -AKSLDDIKDAINLNVK---------PNYEHNVAIVSQTMFAKLDK---MK---DKLGNY-LIQPDVKE-KTQQRLL-GA 331 (415) T ss_pred -ccchHHHHHHHHhhhh---------hccCCCEEEEcHHHHHHHHH---hh---ccCCCe-eeccCcCC-CCCcccc-ce Confidence 0112223344444432 23456778899999888865 21 111110 01111111 1235664 45 Q ss_pred EEEEecccccccccc-eEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc------c Q lcl|NC_015286. 363 KVYVDPYSANVADKH-YYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL------T 434 (457) Q Consensus 363 ~vy~D~y~~~~~~~d-Y~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~------~ 434 (457) +|++..+.|.-...+ -+++|-- . .+ +....... ..+...|-.++|-.+-...|++. +.+|-+-.. . T Consensus 332 pV~~~~~~~~~~~~~~~~~~gd~---~-~~-~~~~~~~~-~~v~~~~~~~~~~~~~~~~r~d~~v~~~~a~~~~~~~~~~ 405 (415) T protein:vir:47 332 KIEILPDEVLGQKGNNTLIIGNL---K-DA-IVLFDRSQ-YQASWTDYMHFGECLMIAVRQDCRILDYKSAIVIEYDDSE 405 (415) T ss_pred eeEEeccccccCCCccEEEEEeh---h-cc-EEEEeecc-eEEEeeccccCceEEEEEEEeccEEeccccEEEEEeeccC Confidence 777665554211111 1222210 0 00 00000000 01112244556667777889988 777753211 1 Q ss_pred Cccccccccc Q lcl|NC_015286. 435 QGSGALTANT 444 (457) Q Consensus 435 ~~~~~~~~~~ 444 (457) .+++.+---. T Consensus 406 ~~~~~~~~~~ 415 (415) T protein:vir:47 406 RGEGDLGLEA 415 (415) T ss_pred CCCCCccCCC Confidence 1111111111 No 29 >protein:vir:9410 Length: 415 # NCBI annotation: head protein # Family: family:all:21 # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803388;genbank:gi:29028700;genbank:GeneID:1258136 Probab=94.83 E-value=0.0034 Score=34.13 Aligned_cols=342 Identities=14% Similarity=0.095 Sum_probs=132.5 Q ss_pred Cch-------------HHHHHHhhHhh-------ccccccccccchhhhhhhh-h----------ccc---hHHHHHHHH Q lcl|NC_015286. 1 MSL-------------QQLQEKWAPVL-------NHESLPEIEDTHKRGVVAQ-L----------LEN---QEKAITEEA 46 (457) Q Consensus 1 ~~~-------------~~l~~~w~~~l-------~~~~~~~i~~~~~~~v~~~-~----------~~n---~~~~~~~~~ 46 (457) ++. +.|.++..-+- +.+.. ++.......+... . ..+ .+..-.|-+ T Consensus 29 ~~~~~~e~~~~~~~ei~~l~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 107 (415) T protein:vir:94 29 LNNDELEKAEKLEQEITDLRSQIQEKQEELDKLKEKDGT-SENNQQSVEVNEASTYRNQANINDLGISIQNTKVTSQEVR 107 (415) T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccccccccchhhHHHHHHHHHHHhhhhhhhhhHHHHH Confidence 111 11112221110 00000 0000000000000 0 000 000000111 Q ss_pred HHhhhhhhccccc--cccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccc Q lcl|NC_015286. 47 SVLNETLQTTGYT--GASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDE 124 (457) Q Consensus 47 ~~~~e~~~~~g~~--~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~E 124 (457) .+.+......... ...+.+|...--....-.+++.+.+..+..+++.++||++..+-+--.+. .+ ++ + T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~--~~------~ 177 (415) T protein:vir:94 108 DFTEYLETRNDIQGGSLKTDSGFVVIPEEIVTDILKLKEVEFNLDKYVTVKRVTNGSGKYPVVRQ--SE--VA------A 177 (415) T ss_pred HHHHHhhhhhhhhhhccccccccccCcHHHHHHHHHHHHhhhhhhhhcceeeccCCceeEEEEee--cC--Cc------c Confidence 1111100000000 11112222221111223355656677889999999999987755432221 10 00 0 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEE Q lcl|NC_015286. 125 AFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKV 204 (457) Q Consensus 125 AlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~ 204 (457) + .+ ..+++...+ .+...|.+..|.+.|. T Consensus 178 ~-------~~--------------------------------------------v~Eg~~~~~-~~~~~~~~i~~~~~k~ 205 (415) T protein:vir:94 178 L-------EK--------------------------------------------VEELEENPE-LAVKPFFQLAYDINTH 205 (415) T ss_pred c-------ee--------------------------------------------ccccccccc-cccccceeeEeeheee Confidence 0 00 000000000 1112355555555555 Q ss_pred EEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchh Q lcl|NC_015286. 205 TVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGR 284 (457) Q Consensus 205 tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~gr 284 (457) . -.-.+|-||.+|-- +|.+++|.+-|...|..-+|+.||.-.-+-.-.+-..+....++- .. .++- T Consensus 206 ~-------~~~~is~ell~ds~----~~~~~~i~~~l~~~~~~~~~~~il~g~g~g~~~~~~~~~~~~~~~-~~--~~~~ 271 (415) T protein:vir:94 206 R-------GYFRISREAIEDAK----VNVLQELKLWMARTIAATRNKAIIDVITKGSTGSTSSGFEKEGKK-LE--VKKA 271 (415) T ss_pred e-------eechhhHHHHhhch----HHHHHHHHHHHHHHHHHHHHHHHhhccccCccccccccccccccc-cc--cccc Confidence 4 34568999999864 478999999999999999999999864332211110000000000 00 0000 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEE Q lcl|NC_015286. 285 WSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKV 364 (457) Q Consensus 285 w~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~v 364 (457) -..+....++..+.. ..++.+.+|+++.....|.. +. ..+|.- ....+.+. ...++|. +++| T Consensus 272 ~~~~~i~~~~~~~~~---------~~~~~~~~vmn~~~~~~l~~---lk---d~~G~~-l~~~~~~~-~~~~~l~-G~pV 333 (415) T protein:vir:94 272 KSLDDIKDAINLNVK---------PNYEHNVAIVSQTMFAKLDK---MK---DKLGNY-LIQPDVKE-KTQQRLL-GAKI 333 (415) T ss_pred cchHHHHHHHHhhhh---------hccCCCEEEEcHHHHHHHHH---hh---ccCCCe-eeccCcCC-CCCceec-ceee Confidence 112223334333322 22356778899999888876 21 111110 01111111 1234563 4677 Q ss_pred EEecccccccccce-EEEEE-ecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc------cC Q lcl|NC_015286. 365 YVDPYSANVADKHY-YVAGY-KGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL------TQ 435 (457) Q Consensus 365 y~D~y~~~~~~~dY-~~vG~-KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~------~~ 435 (457) ++.+..|.-...+. +++|- +. . +..... ....+...|-.++|-.+-...|++. +.+|-+-.. .. T Consensus 334 ~~~~~~~~~~~~~~~i~~gd~~~-----~-~~~~~~-~~~~v~~~~~~~~~~~~r~~~r~d~~~~~~~a~~~~~~~~~~~ 406 (415) T protein:vir:94 334 EILPDEVLGQKGNNTLIIGNLKD-----A-IVLFDR-SQYQASWTDYMHFGECLMIAVRQDCRILDYKSAIVIEYDDSER 406 (415) T ss_pred EEecccccCCCCccEEEEEehhc-----c-EEEEee-cceEEEEeccccCceEEEEEEEeccEEeccccEEEEEEeccCC Confidence 77665442111111 22221 10 0 000000 0001112244556667777789988 677753311 11 Q ss_pred ccccccccc Q lcl|NC_015286. 436 GSGALTANT 444 (457) Q Consensus 436 ~~~~~~~~~ 444 (457) +++.+---. T Consensus 407 ~~~~~~~~~ 415 (415) T protein:vir:94 407 GEGDLGLEA 415 (415) T ss_pred CCCccccCC Confidence 111111111 No 30 >protein:vir:4511 Length: 409 # NCBI annotation: capsid # Family: family:all:21 # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599037;genbank:gi:19548995;genbank:GeneID:935211 Probab=94.82 E-value=0.0034 Score=34.11 Aligned_cols=328 Identities=15% Similarity=0.143 Sum_probs=123.4 Q ss_pred Cc-------------hHHHHHHhh---------------------HhhccccccccccchhhhhhhhhccchHH-HHHHH Q lcl|NC_015286. 1 MS-------------LQQLQEKWA---------------------PVLNHESLPEIEDTHKRGVVAQLLENQEK-AITEE 45 (457) Q Consensus 1 ~~-------------~~~l~~~w~---------------------~~l~~~~~~~i~~~~~~~v~~~~~~n~~~-~~~~~ 45 (457) ++ .+.|.++.+ +.+..+.- .-....+++.....+.+-.. ...++ T Consensus 29 ~t~e~~~~~~~~~~e~~~l~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~e 107 (409) T protein:vir:45 29 WTEEQRTEWNKAKSELEALDERIAREEELRRQDQAYIESNEEEQRQNLDPENN-SQQDEKRAQVFDKWMRHGASELTSEE 107 (409) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCCc-chhhHHHHHHHHHHHHhhhhhccHHH Confidence 11 111222221 11111111 01111122222222222111 11233 Q ss_pred HHHhhhhhhccccccccccc---ccc---ccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCccc Q lcl|NC_015286. 46 ASVLNETLQTTGYTGASTAT---GPV---AGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAA 119 (457) Q Consensus 46 ~~~~~e~~~~~g~~~~st~t---g~i---~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~ 119 (457) ++.+.|.- +.++++ |.. ..+.+.++.+.| +..+..+++-|-|+++.....+-.... .... T Consensus 108 ~~~~~~~~------a~~~~~~~~gg~liP~~~~~~ii~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~-- 173 (409) T protein:vir:45 108 RKALRELR------AQGVAQDEKGGYTVPETFLAKVVEKMK---SYGGIASVAQILTTSDGRTMEWATADG---TSEV-- 173 (409) T ss_pred HHHHHHHh------hccCccCcCCceeccHhHHHHHHHHHH---hhhhhhhhceeeecCCCceEEEEeecc---Cccc-- Confidence 33333321 111111 111 112233344433 445567788888887765544422210 0000 Q ss_pred CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCccccccee Q lcl|NC_015286. 120 SGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGF 199 (457) Q Consensus 120 ~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsF 199 (457) + -...+++... ..+..|.+..| T Consensus 174 -----~---------------------------------------------------~~v~E~~~~~--~~~~~f~~~~l 195 (409) T protein:vir:45 174 -----G---------------------------------------------------VLLGENEEAG--EEDTDFGMGSL 195 (409) T ss_pred -----c---------------------------------------------------cccccccccc--ccccccceeee Confidence 0 0000011111 11123433333 Q ss_pred EEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeecc Q lcl|NC_015286. 200 SIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDV 279 (457) Q Consensus 200 sIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~ 279 (457) .--|.. +-=..+|-||.+|- .+|.+++|.+-|+..|.+-+|+.||.-=-+ + ......|++.-.. T Consensus 196 ~~~k~~------~~~i~is~ell~ds----~~~l~~~i~~~la~a~~~~~~~a~l~G~G~----~--~~~~p~Gil~~~~ 259 (409) T protein:vir:45 196 GALKMT------SKIIRVSNELLQDS----AIDMEAYLARRIAERIGRGEARYLIQGTGA----G--TPKQPKGLAASVT 259 (409) T ss_pred eeeeee------eeehhhhHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHhhccCCC----C--Cccccceeeeccc Confidence 222211 11134799999994 257899999999999999999998852100 0 0001223322111 Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccE-EEEchhHHHHHhhCCcceecccccccccccccccCCce Q lcl|NC_015286. 280 DSN-----GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNI-LICSADVASALGMAGVLDYSPALNGNNALTGVDDTSST 353 (457) Q Consensus 280 ~~~-----grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~-~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~ 353 (457) ... +--..+....|++.+... -+..+.| +++++.....|.. |. ..+|.- ....+.+. . T Consensus 260 ~~~~~~~~~~~~~d~i~~l~~~l~~~--------~~~~a~~~~~~n~~~~~~l~~---lk---d~~G~~-i~~~~~~~-~ 323 (409) T protein:vir:45 260 GTTQTAAANAVKWQEILALKHSIDPA--------YRRGPKFRLAFNDNTLKLISE---ME---DGQGRP-LWLPDIVG-V 323 (409) T ss_pred cccccccccccchHHHHHHHHhhhhh--------hccCCeEEEEECHHHHHHHHH---hh---cCCCce-eeccCcCC-C Confidence 000 000112233343433222 3445666 5788888776654 21 111110 01111111 1 Q ss_pred EEEEecCceEEEEecccccccccce-EEEEEecCCCccceeEEcccccccccc-ccCCccccceeeee--eeeee-eecc Q lcl|NC_015286. 354 LVGTLNGRIKVYVDPYSANVADKHY-YVAGYKGTSPYDAGLFYCPYVPLQQVR-AINPDTFQPKIGFK--TRYGM-VSNP 428 (457) Q Consensus 354 ~~G~l~~~~~vy~D~y~~~~~~~dY-~~vG~KG~~~~d~glfyaPYv~~~~~~-~~Dp~s~qP~~g~~--tRY~l-~~nP 428 (457) -.++|.| ++|+++.+.|.....++ +++| +-. ..+... .-...+. ..||-.-...++|. .||+. +.|| T Consensus 324 ~~~~l~G-~PV~~~~~~p~~~~~~~~i~~G---d~~---~~~i~~-~~~~~~~~~~d~~~~~~~~~~~~~~r~d~~~~~~ 395 (409) T protein:vir:45 324 APASVLN-VPYVIDQEIDDIGAGKKFMFCG---DFD---RFIIRR-VRYMILKRLVERYAEYDQTGFLAFHRFDCILEDT 395 (409) T ss_pred CCceecc-eeeEEecCcCCccCCccEEEEe---ehh---hhheee-ccceEEEEeecccccCCcEEEEEEEEeccEeech Confidence 1246654 69999887764222222 2222 110 000000 0000111 12444323444443 47776 6777 Q ss_pred ccccc-cCccccccccc Q lcl|NC_015286. 429 FAQGL-TQGSGALTANT 444 (457) Q Consensus 429 ~~~~~-~~~~~~~~~~~ 444 (457) -+..+ +-+.+ .|. T Consensus 396 ~A~~~l~~k~s---~~~ 409 (409) T protein:vir:45 396 SAIKALVGKGS---VGG 409 (409) T ss_pred hheEEEEeccC---CCC Confidence 64322 11110 000 No 31 >protein:vir:9820 Length: 272 # NCBI annotation: putative major capsid/head protein # Family: family:all:522 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795582;genbank:gi:28876339;genbank:GeneID:1257858 Probab=94.44 E-value=0.0044 Score=33.49 Aligned_cols=269 Identities=11% Similarity=0.077 Sum_probs=123.4 Q ss_pred cCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcc Q lcl|NC_015286. 114 ERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTA 193 (457) Q Consensus 114 ~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~ 193 (457) ..... +.....+.+|--..+--..- ............+. .+.. ..|.. .....--....++..+++. ..+ T Consensus 1 MA~~~-T~~~~~~iPev~s~~v~~~~----~~~~~~~~~~~~~~-~~~g-~~G~t--v~iP~~~~~~~a~~v~eg~-~i~ 70 (272) T protein:vir:98 1 MAVGT-TKMAQMLDPEVLADMIDAEV----GKAIRFAPLAEVDT-TLEG-QPGTT--LTVPKWDYIGDAEDVAEGE-AIP 70 (272) T ss_pred CCCcc-ccchheechHHHHHHHHHHH----HHHhhhhccccccc-cccC-CCCCE--EEEEEecCCCCcccccCCC-ccc Confidence 11000 00111222221111100000 00000000000000 0000 00100 0000000112223233221 223 Q ss_pred cccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccce Q lcl|NC_015286. 194 FREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAG 273 (457) Q Consensus 194 f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~G 273 (457) ..++ +.+..+++.|.++-.-++|=|++.+ -+-|..+++.+-|+..|+.+|+++|+..+.+.... + .+ T Consensus 71 ~~~~--~~~~~~~~~~~~~~~~~itd~~~~~----s~~d~~~~~~~~~~~~~a~~~d~~i~~~~~~a~~~-----~--~~ 137 (272) T protein:vir:98 71 MTQL--GFKKTTMTIKKAGKGVEITDEAILS----GYGDPVGQAAKQIVEAIDHKVDADVLDALSKSTQT-----V--EA 137 (272) T ss_pred cccc--ccceEEEEeeeeeeeeeecHHHHhh----ccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----c--cc Confidence 3444 4578888888887767777666543 34799999999999999999999999887543321 1 11 Q ss_pred eEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCce Q lcl|NC_015286. 274 VFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSST 353 (457) Q Consensus 274 v~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~ 353 (457) -.++ +-+-.+..++..+ -...+++|++|.+++.|......++....+.. .+...+. T Consensus 138 ~~t~----------d~i~da~~~l~~~---------~~~~~~~vv~p~~~~~L~k~~~~~~~~~~~~~-----~~~~~~g 193 (272) T protein:vir:98 138 TATV----------DGVSKALDIFNDE---------DDAETVIVMNPADASTLRLDAAKEWLGATEVG-----ANRVVSG 193 (272) T ss_pred ccCH----------HHHHHHHHHHhcc---------CCCccEEEEcHHHHHHHHHhcccccccccccc-----ccccccc Confidence 1111 1122232333322 24567999999999998765555544332221 1122333 Q ss_pred EEEEecCceEEEEecccccccccceEEEEEe-cCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccc Q lcl|NC_015286. 354 LVGTLNGRIKVYVDPYSANVADKHYYVAGYK-GTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQ 431 (457) Q Consensus 354 ~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~K-G~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~ 431 (457) ..|++. |++|+++.+.|. |-.+.++ |.- +++-..-+.... --|+.+++-.+-..-|||+ +.||-.. T Consensus 194 ~ig~i~-G~~Vi~s~~~p~-----~t~~~~~~~a~----~~~~~~~~~ve~--~r~~~~~~~~i~~~~~~~~~v~~~~~v 261 (272) T protein:vir:98 194 VYGEVL-GVQIVRSRKCPK-----GTAYMVRKGAL----RIMLKRNTMVET--DRDITKAINQIVANKHYGVYLYKAEKA 261 (272) T ss_pred cchhhc-CeeEEEcCCCCc-----ceEEEEcCCeE----EEEecCCceeee--ccccccceeEEEEEEEEEEEEEcCCce Confidence 467885 579999988762 2222222 211 122122222111 1388888888888889998 7777521 Q ss_pred -cccCcccccccccchheeee Q lcl|NC_015286. 432 -GLTQGSGALTANTNRYYRRV 451 (457) Q Consensus 432 -~~~~~~~~~~~~~n~~~~r~ 451 (457) .++-+++. +- T Consensus 262 v~~t~~~a~----------~~ 272 (272) T protein:vir:98 262 VKITLKDAA----------KK 272 (272) T ss_pred EEEEecccc----------cC Confidence 22211111 11 No 32 >protein:vir:3033 Length: 272 # NCBI annotation: major capsid protein # Family: family:all:522 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438146;genbank:gi:16271809;genbank:GeneID:929235 Probab=94.44 E-value=0.0044 Score=33.49 Aligned_cols=269 Identities=11% Similarity=0.077 Sum_probs=123.4 Q ss_pred cCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcc Q lcl|NC_015286. 114 ERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTA 193 (457) Q Consensus 114 ~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~ 193 (457) ..... +.....+.+|--..+--..- ............+. .+.. ..|.. .....--....++..+++. ..+ T Consensus 1 MA~~~-T~~~~~~iPev~s~~v~~~~----~~~~~~~~~~~~~~-~~~g-~~G~t--v~iP~~~~~~~a~~v~eg~-~i~ 70 (272) T protein:vir:30 1 MAVGT-TKMAQMLDPEVLADMIDAEV----GKAIRFAPLAEVDT-TLEG-QPGTT--LTVPKWDYIGDAEDVAEGE-AIP 70 (272) T ss_pred CCCcc-ccchheechHHHHHHHHHHH----HHHhhhhccccccc-cccC-CCCCE--EEEEEecCCCCcccccCCC-ccc Confidence 11000 00111222221111100000 00000000000000 0000 00100 0000000112223233221 223 Q ss_pred cccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccce Q lcl|NC_015286. 194 FREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAG 273 (457) Q Consensus 194 f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~G 273 (457) ..++ +.+..+++.|.++-.-++|=|++.+ -+-|..+++.+-|+..|+.+|+++|+..+.+.... + .+ T Consensus 71 ~~~~--~~~~~~~~~~~~~~~~~itd~~~~~----s~~d~~~~~~~~~~~~~a~~~d~~i~~~~~~a~~~-----~--~~ 137 (272) T protein:vir:30 71 MTQL--GFKKTTMTIKKAGKGVEITDEAILS----GYGDPVGQAAKQIVEAIDHKVDADVLDALSKSTQT-----V--EA 137 (272) T ss_pred cccc--ccceEEEEeeeeeeeeeecHHHHhh----ccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----c--cc Confidence 3444 4578888888887767777666543 34799999999999999999999999887543321 1 11 Q ss_pred eEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCce Q lcl|NC_015286. 274 VFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSST 353 (457) Q Consensus 274 v~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~ 353 (457) -.++ +-+-.+..++..+ -...+++|++|.+++.|......++....+.. .+...+. T Consensus 138 ~~t~----------d~i~da~~~l~~~---------~~~~~~~vv~p~~~~~L~k~~~~~~~~~~~~~-----~~~~~~g 193 (272) T protein:vir:30 138 TATV----------DGVSKALDIFNDE---------DDAETVIVMNPADASTLRLDAAKEWLGATEVG-----ANRVVSG 193 (272) T ss_pred ccCH----------HHHHHHHHHHhcc---------CCCccEEEEcHHHHHHHHHhcccccccccccc-----ccccccc Confidence 1111 1122232333322 24567999999999998765555544332221 1122333 Q ss_pred EEEEecCceEEEEecccccccccceEEEEEe-cCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccc Q lcl|NC_015286. 354 LVGTLNGRIKVYVDPYSANVADKHYYVAGYK-GTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQ 431 (457) Q Consensus 354 ~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~K-G~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~ 431 (457) ..|++. |++|+++.+.|. |-.+.++ |.- +++-..-+.... --|+.+++-.+-..-|||+ +.||-.. T Consensus 194 ~ig~i~-G~~Vi~s~~~p~-----~t~~~~~~~a~----~~~~~~~~~ve~--~r~~~~~~~~i~~~~~~~~~v~~~~~v 261 (272) T protein:vir:30 194 VYGEVL-GVQIVRSRKCPK-----GTAYMVRKGAL----RIMLKRNTMVET--DRDITKAINQIVANKHYGVYLYKAEKA 261 (272) T ss_pred cchhhc-CeeEEEcCCCCc-----ceEEEEcCCeE----EEEecCCceeee--ccccccceeEEEEEEEEEEEEEcCCce Confidence 467885 579999988762 2222222 211 122122222111 1388888888888889998 7777521 Q ss_pred -cccCcccccccccchheeee Q lcl|NC_015286. 432 -GLTQGSGALTANTNRYYRRV 451 (457) Q Consensus 432 -~~~~~~~~~~~~~n~~~~r~ 451 (457) .++-+++. +- T Consensus 262 v~~t~~~a~----------~~ 272 (272) T protein:vir:30 262 VKITLKDAA----------KK 272 (272) T ss_pred EEEEecccc----------cC Confidence 22211111 11 No 33 >protein:vir:95898 Length: 274 # NCBI annotation: ORF014 # Family: family:all:522 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240385;genbank:gi:66396054;genbank:GeneID:5133409 Probab=93.82 E-value=0.0019 Score=35.48 Aligned_cols=268 Identities=12% Similarity=0.034 Sum_probs=119.5 Q ss_pred cCCcccCcccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccchhhhhccCCCCCCc Q lcl|NC_015286. 114 ERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTY-EQTADATGMTTATAEALDDSSSNT 192 (457) Q Consensus 114 ~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~-~~~~~~~Gm~Ta~aEaLg~~s~~~ 192 (457) ..++ .+.-..-+-+|-.+.+=-. .. ...... .+.+..+....|.. .+.+...--....+|.+.++. .. T Consensus 1 m~~~-~T~l~d~i~Pev~~~~v~~---~~-~~~l~~-----~~~~~~~~~l~g~~G~tv~iP~~~~ig~a~~~~~g~-~i 69 (274) T protein:vir:95 1 MAQG-MTKLTNQIVPEVLAPMMQA---EL-EKKLRF-----ASFAEIDNTLVGQPGDTLTFPAFIYSGDAKVVAEGE-KI 69 (274) T ss_pred CCcc-eeehhheechHHHHHHHHH---HH-Hhhhhc-----cccceecccccCCCCCEEEeeeecCCCccccccCCC-cc Confidence 1110 0000011111211110000 00 000000 00000000000000 000000000112334343322 23 Q ss_pred ccccceeEEEEEEEEeecccccceeeHHHHHhHHHhh-CCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccccc Q lcl|NC_015286. 193 AFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIH-GLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTAT 271 (457) Q Consensus 193 ~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiH-GLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~ 271 (457) ...+++. .+.+++.+-|+- + |.+. |+.+.. +-|.-.+..+-++..++.+++++++..+.+....- . T Consensus 70 ~~~~lt~--~~~~~~i~~~~~-a-~~i~---D~~~~~~~~d~~~~~~~~~~~~~a~~vd~~i~~~l~~a~~~~------~ 136 (274) T protein:vir:95 70 PTDILET--KKREAKIRKIAK-G-TSIS---DEALLSGYGDPQGEQVRQHGLAHANKVDDDVLEALKSAKLTV------E 136 (274) T ss_pred chhhccc--ceeEEEeeeeec-c-eeeh---HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------c Confidence 3445544 344444444432 2 2222 665544 35889999999999999999999998875533221 1 Q ss_pred ceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCC Q lcl|NC_015286. 272 AGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTS 351 (457) Q Consensus 272 ~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~ 351 (457) ...+ +.. -+-..+.++..| -..+++++++|.+++.|.......|.++.+..+ .... T Consensus 137 ~~~~------~~d----~i~~A~~~lgd~---------~~~~~~ivv~p~~~~~L~k~~~~~f~~~s~~g~-----~~~~ 192 (274) T protein:vir:95 137 ADIT------KLT----GLQTAIDKFNDE---------DLEPMVLFISPLDAGKLRGDATTNFTRATELGD-----DVIV 192 (274) T ss_pred cccc------CHH----HHHHHHHHhccc---------cccccEEEeCHHHHHHHHhhccccccccccccc-----ccee Confidence 1111 111 222333444332 136889999999999998866556665544321 1223 Q ss_pred ceEEEEecCceEEEEecccccccccceEEEEEe-cCCCccceeEEcccccccccccc-CCccccceeeeeeeeee-eecc Q lcl|NC_015286. 352 STLVGTLNGRIKVYVDPYSANVADKHYYVAGYK-GTSPYDAGLFYCPYVPLQQVRAI-NPDTFQPKIGFKTRYGM-VSNP 428 (457) Q Consensus 352 ~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~K-G~~~~d~glfyaPYv~~~~~~~~-Dp~s~qP~~g~~tRY~l-~~nP 428 (457) +..+|++. +++||+|...| +|-.+-++ |.-. ||.. ....+.+. ||.+++=.+-..-+||. +.|| T Consensus 193 ~G~ig~~~-G~~Vi~s~~~~-----~~t~~l~~~gA~~-----~~~~--~~~~vE~~Rd~~~~~d~i~~~~~y~~~~~~~ 259 (274) T protein:vir:95 193 KGAFGEAL-GAVIVRSNKLE-----AGTAILAKKGAVK-----LITK--RDFFLETDRDPSTKTTALYSDKHYVAYLYDE 259 (274) T ss_pred ccccceec-CeEEEEeCCCC-----CceEEEEecccee-----eeec--CCcccccccccccccCEEEEeEEEEEEEEcC Confidence 44578885 69999995544 22222222 2111 1111 11112222 99999999999999999 7787 Q ss_pred ccc-cccCcccccccccchh Q lcl|NC_015286. 429 FAQ-GLTQGSGALTANTNRY 447 (457) Q Consensus 429 ~~~-~~~~~~~~~~~~~n~~ 447 (457) --. .++-++..+- | T Consensus 260 ~~~v~~tk~~~~~~-----~ 274 (274) T protein:vir:95 260 SKAVKITKGSGSLE-----M 274 (274) T ss_pred CcEEEEEcCCcccc-----C Confidence 421 1121111111 1 No 34 >protein:vir:96262 Length: 274 # NCBI annotation: ORF013 # Family: family:all:522 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240311;genbank:gi:66395978;genbank:GeneID:5133339 Probab=93.82 E-value=0.0019 Score=35.48 Aligned_cols=268 Identities=12% Similarity=0.034 Sum_probs=119.5 Q ss_pred cCCcccCcccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccchhhhhccCCCCCCc Q lcl|NC_015286. 114 ERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTY-EQTADATGMTTATAEALDDSSSNT 192 (457) Q Consensus 114 ~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~-~~~~~~~Gm~Ta~aEaLg~~s~~~ 192 (457) ..++ .+.-..-+-+|-.+.+=-. .. ...... .+.+..+....|.. .+.+...--....+|.+.++. .. T Consensus 1 m~~~-~T~l~d~i~Pev~~~~v~~---~~-~~~l~~-----~~~~~~~~~l~g~~G~tv~iP~~~~ig~a~~~~~g~-~i 69 (274) T protein:vir:96 1 MAQG-MTKLTNQIVPEVLAPMMQA---EL-EKKLRF-----ASFAEIDNTLVGQPGDTLTFPAFIYSGDAKVVAEGE-KI 69 (274) T ss_pred CCcc-eeehhheechHHHHHHHHH---HH-Hhhhhc-----cccceecccccCCCCCEEEeeeecCCCccccccCCC-cc Confidence 1110 0000011111211110000 00 000000 00000000000000 000000000112334343322 23 Q ss_pred ccccceeEEEEEEEEeecccccceeeHHHHHhHHHhh-CCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccccc Q lcl|NC_015286. 193 AFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIH-GLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTAT 271 (457) Q Consensus 193 ~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiH-GLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~ 271 (457) ...+++. .+.+++.+-|+- + |.+. |+.+.. +-|.-.+..+-++..++.+++++++..+.+....- . T Consensus 70 ~~~~lt~--~~~~~~i~~~~~-a-~~i~---D~~~~~~~~d~~~~~~~~~~~~~a~~vd~~i~~~l~~a~~~~------~ 136 (274) T protein:vir:96 70 PTDILET--KKREAKIRKIAK-G-TSIS---DEALLSGYGDPQGEQVRQHGLAHANKVDDDVLEALKSAKLTV------E 136 (274) T ss_pred chhhccc--ceeEEEeeeeec-c-eeeh---HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------c Confidence 3445544 344444444432 2 2222 665544 35889999999999999999999998875533221 1 Q ss_pred ceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCC Q lcl|NC_015286. 272 AGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTS 351 (457) Q Consensus 272 ~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~ 351 (457) ...+ +.. -+-..+.++..| -..+++++++|.+++.|.......|.++.+..+ .... T Consensus 137 ~~~~------~~d----~i~~A~~~lgd~---------~~~~~~ivv~p~~~~~L~k~~~~~f~~~s~~g~-----~~~~ 192 (274) T protein:vir:96 137 ADIT------KLT----GLQTAIDKFNDE---------DLEPMVLFISPLDAGKLRGDATTNFTRATELGD-----DVIV 192 (274) T ss_pred cccc------CHH----HHHHHHHHhccc---------cccccEEEeCHHHHHHHHhhccccccccccccc-----ccee Confidence 1111 111 222333444332 136889999999999998866556665544321 1223 Q ss_pred ceEEEEecCceEEEEecccccccccceEEEEEe-cCCCccceeEEcccccccccccc-CCccccceeeeeeeeee-eecc Q lcl|NC_015286. 352 STLVGTLNGRIKVYVDPYSANVADKHYYVAGYK-GTSPYDAGLFYCPYVPLQQVRAI-NPDTFQPKIGFKTRYGM-VSNP 428 (457) Q Consensus 352 ~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~K-G~~~~d~glfyaPYv~~~~~~~~-Dp~s~qP~~g~~tRY~l-~~nP 428 (457) +..+|++. +++||+|...| +|-.+-++ |.-. ||.. ....+.+. ||.+++=.+-..-+||. +.|| T Consensus 193 ~G~ig~~~-G~~Vi~s~~~~-----~~t~~l~~~gA~~-----~~~~--~~~~vE~~Rd~~~~~d~i~~~~~y~~~~~~~ 259 (274) T protein:vir:96 193 KGAFGEAL-GAVIVRSNKLE-----AGTAILAKKGAVK-----LITK--RDFFLETDRDPSTKTTALYSDKHYVAYLYDE 259 (274) T ss_pred ccccceec-CeEEEEeCCCC-----CceEEEEecccee-----eeec--CCcccccccccccccCEEEEeEEEEEEEEcC Confidence 44578885 69999995544 22222222 2111 1111 11112222 99999999999999999 7787 Q ss_pred ccc-cccCcccccccccchh Q lcl|NC_015286. 429 FAQ-GLTQGSGALTANTNRY 447 (457) Q Consensus 429 ~~~-~~~~~~~~~~~~~n~~ 447 (457) --. .++-++..+- | T Consensus 260 ~~~v~~tk~~~~~~-----~ 274 (274) T protein:vir:96 260 SKAVKITKGSGSLE-----M 274 (274) T ss_pred CcEEEEEcCCcccc-----C Confidence 421 1121111111 1 No 35 >protein:vir:6212 Length: 434 # NCBI annotation: prohead protease # Family: family:all:21 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852592;genbank:gi:31415852;genbank:GeneID:1489210 Probab=93.44 E-value=0.0032 Score=34.23 Aligned_cols=335 Identities=11% Similarity=0.083 Sum_probs=126.0 Q ss_pred CchHHHHHHhhHhhc-----------cccccc--cccchhhhhhhhhc-------cchHHHHHHHHHHhhhhhhcc---- Q lcl|NC_015286. 1 MSLQQLQEKWAPVLN-----------HESLPE--IEDTHKRGVVAQLL-------ENQEKAITEEASVLNETLQTT---- 56 (457) Q Consensus 1 ~~~~~l~~~w~~~l~-----------~~~~~~--i~~~~~~~v~~~~~-------~n~~~~~~~~~~~~~e~~~~~---- 56 (457) +-.+.-.++.....+ ++...+ +....++......+ .++.....|.++...+.+... T Consensus 59 le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~r~a~~~~l~~~~~~~ 138 (434) T protein:vir:62 59 LEEKEKEEDPAKKKDDDPEKKEDPTAKENPNEKTELSEEQRSAISASIAAALSTKGHRTNKETEIRSVFANYIVGNIDEK 138 (434) T ss_pred HHHHHHHHHHHhhhcchhhhhcchhhhcchhhhHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccccchh Confidence 111111111111111 111000 00001111111111 111111122222222111100 Q ss_pred ccccccccccccccccceeh--hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccc Q lcl|NC_015286. 57 GYTGASTATGPVAGFDPVLI--SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGF 134 (457) Q Consensus 57 g~~~~st~tg~i~~~~P~Lv--~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~f 134 (457) ...+.+++|++-.-.=|.-+ .+++...+..+...++-|.|++|..- |- ++.. .+.+ . + T Consensus 139 e~~a~~~~t~~GG~lvP~~~~~~Ii~~l~~~~~i~~~~~~~~~~~~~~--~p---~~~~-~~~a-~-------------~ 198 (434) T protein:vir:62 139 EARALGLVTGNGSVTIPDFLSKEIITYAQEENFLRRLGTGVKTKENIK--YP---VLVK-KAEA-Q-------------G 198 (434) T ss_pred hhhhhcccccccceecchhhHHHHHHhhhhhhhhhhhcceeccCCceE--EE---EEec-CCcc-c-------------c Confidence 00111222221111113322 25565667777888888888775311 11 1110 0000 0 0 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeeccccc Q lcl|NC_015286. 135 SGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALK 214 (457) Q Consensus 135 SG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLK 214 (457) . ...+| +...++-..++++++..+|.-+-. T Consensus 199 ------------------------~-------------------~~~~e-------~~~~~~~~~~f~~v~~~~~k~~~~ 228 (434) T protein:vir:62 199 ------------------------H-------------------KNERT-------NNEMPETDIEFDEIELSPTEFDAL 228 (434) T ss_pred ------------------------e-------------------ecccc-------cccccccccceeeEEeeheeeEee Confidence 0 00000 011122222446666677777777 Q ss_pred ceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHH Q lcl|NC_015286. 215 AEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLL 294 (457) Q Consensus 215 AEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~ 294 (457) ..+|-||.+|- .+|.+++|.+-|+..|..-+++.||.-==+ -....++.......+...... ..+....|. T Consensus 229 ~~iS~ell~ds----~~~l~~~i~~~la~~~~~~~d~~~l~G~G~---~~~~~g~~~~~~~~~~~~~~~--~~d~l~~l~ 299 (434) T protein:vir:62 229 ATVTKKLLART----GLPIEQIVMDELKKAYVRKETQYMVNGDEA---NNINDGALAKKAVEFKTDEKN--LYDALVKMK 299 (434) T ss_pred hhhHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHhccCCC---Cccccceeecccccccccccc--hhhHHHHHH Confidence 88999999995 357899999999999999999999852100 000111111111112111111 112233343 Q ss_pred HHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEeccccccc Q lcl|NC_015286. 295 FQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVA 374 (457) Q Consensus 295 ~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~ 374 (457) +.+... -+..+ ..|+++.....|.. |. ..+|.--+..........-.+|. +++|+++.+.|... T Consensus 300 ~~l~~~--------~~~~a-~~v~n~~~~~~L~~---lk---d~~G~~l~~~~~~~~~g~~~tl~-G~pV~~~~~~~~~~ 363 (434) T protein:vir:62 300 NTPVKE--------VRKKA-RWVLNTAALTKIET---MK---TDDGFPLLRPFNQAEGGIGYTLL-GFPVEEEDAIDIPD 363 (434) T ss_pred hhcchh--------hhcCC-EEEEcHHHHHHHHH---hh---ccCCCEeeccCCCccCCCCceec-ceeeEEecCccCcc Confidence 444221 23334 34778888877765 21 11111100000000001112454 47888886654211 Q ss_pred c-----------cceEEEEEecCCCccceeEEccccccccccccCC--ccccceeeeeeeee-eee-ccccccccCcccc Q lcl|NC_015286. 375 D-----------KHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINP--DTFQPKIGFKTRYG-MVS-NPFAQGLTQGSGA 439 (457) Q Consensus 375 ~-----------~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp--~s~qP~~g~~tRY~-l~~-nP~~~~~~~~~~~ 439 (457) . .+|+++-.+|..+.+ +..++ ..-|=.+..+.|.+ ..+ .|++..+-..... T Consensus 364 ~~~~~~i~~Gdfs~~~i~~~~g~~~i~--------------~~~~~~~~~~~v~~~~~~r~Dgk~i~~~~~~~~~~~~~~ 429 (434) T protein:vir:62 364 SPDTPVFYFGDFSKFYIQDVIGSLEVQ--------------KLVELFSRTNRVGFRIWNLLDAQLIHSPFEVPVYKYVLK 429 (434) T ss_pred CCCceEEEEeeccceEEEEeeceeEEE--------------eehhhhcccCceEEEEEeeecceeecCcccceEEEEEec Confidence 0 011111122222111 11122 12233345556774 444 4886644322211 Q ss_pred ccccc Q lcl|NC_015286. 440 LTANT 444 (457) Q Consensus 440 ~~~~~ 444 (457) .-.+. T Consensus 430 ~~~~~ 434 (434) T protein:vir:62 430 APTGA 434 (434) T ss_pred cCCCC Confidence 11111 No 36 >protein:vir:104256 Length: 458 # NCBI annotation: major head protein precursor # Family: family:all:27070 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006977;genbank:gi:46401878;genbank:GeneID:2777673 Probab=93.17 E-value=0.0085 Score=31.93 Aligned_cols=332 Identities=14% Similarity=0.109 Sum_probs=124.1 Q ss_pred Cc---------hHHHHHHhhH------------hhccccccccccchhhhhhhhhccchHHHHHHHHHHhhhhh------ Q lcl|NC_015286. 1 MS---------LQQLQEKWAP------------VLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETL------ 53 (457) Q Consensus 1 ~~---------~~~l~~~w~~------------~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~------ 53 (457) +. .+...++... +-..+..+.+....++... .-.+|.+..+ +.+.+.+... T Consensus 73 l~ee~~~~~~~~a~~~e~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~-e~~~~~~~~~~~~~~~ 150 (458) T protein:vir:10 73 LDEKSKKSNELFAQTVEKQQETIVGLQDEIKSLLTAREGRSFVGDSVAKALY-GTQENFEDEV-EKLVLLSYVMEKGVFE 150 (458) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccch-hhhhhHHHHH-HHHHHHHHHHhhccch Confidence 00 0000111110 0001111111111111100 0011111111 0011111000 Q ss_pred hcccc-----ccccccccccc-cccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccc Q lcl|NC_015286. 54 QTTGY-----TGASTATGPVA-GFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAF 126 (457) Q Consensus 54 ~~~g~-----~~~st~tg~i~-~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAl 126 (457) ...+. ...+++..+.. .+-|.+. .++.++.+..+..+++-++||+++..-++ .. .++. T Consensus 151 ~~~~~~~~~a~~~~~~~~~g~~~ip~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~-~~------~~~~-------- 215 (458) T protein:vir:10 151 TEHGQRHLKAVNQSSSVEVSSESYETIFSQRIIRDLQKELVVGALFEELPMSSKILTML-VE------PDAG-------- 215 (458) T ss_pred hhhhhhhhhhhhhcccCccccceehhhHhHHHHHHHHhhhhHHhhcceeecCCcceEEE-Ee------cCCc-------- Confidence 00000 01111111111 1111111 24455556778899999999988653222 11 1100 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEE Q lcl|NC_015286. 127 FNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTV 206 (457) Q Consensus 127 fnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tV 206 (457) ...|-+ .+....+. .......+.| +++++ T Consensus 216 ----~a~~v~--------------------------------------------e~~~~~~~-~~~~~~~~~~--~~i~~ 244 (458) T protein:vir:10 216 ----KATWVA--------------------------------------------ASTYGTDT-TTGEEVKGAL--KEIHF 244 (458) T ss_pred ----ceeecc--------------------------------------------cccccccc-cccccccccc--eeeEe Confidence 000000 00000000 0001111222 55555 Q ss_pred EeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec-------- Q lcl|NC_015286. 207 TARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD-------- 278 (457) Q Consensus 207 tAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~-------- 278 (457) .++.-+-...+|-||.+|-- .|.+++|.+-|+..|..-||+.||.-= -.++ ..|++... T Consensus 245 ~~~k~~~~v~is~ell~ds~----~~~~~~i~~~l~~~i~~~~d~~~l~G~----G~~~-----p~Gi~~~~~~~~~~~~ 311 (458) T protein:vir:10 245 STYKLAAKSFITDETEEDAI----FSLLPLLRKRLIEAHAVSIEEAFMTGD----GSGK-----PKGLLTLASEDSAKVV 311 (458) T ss_pred eeeeEEeeehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHhhcCC----CCCc-----cceeeeccccccccee Confidence 55555556788999988843 468899999999999999999988520 0011 22222211 Q ss_pred ----cccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhC----CcceecccccccccccccccC Q lcl|NC_015286. 279 ----VDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMA----GVLDYSPALNGNNALTGVDDT 350 (457) Q Consensus 279 ----~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~s----g~l~~~~~~~~~~~~~~~d~~ 350 (457) .....-...+....|++.+.. .-.+...+|+++.....|... |-.-+.|.... .. T Consensus 312 ~~~~~~~~~~~~~~~i~~~~~~l~~---------~~~~~~~~v~~~~~~~~l~~lkd~~G~~i~~~~~~~--------~~ 374 (458) T protein:vir:10 312 TEAKADGSVLVTAKTISKLRRKLGR---------HGLKLSKLVLIVSMDAYYDLLEDEEWQDVAQVGNDS--------VK 374 (458) T ss_pred ecccccccccccHHHHHHHHHhhhh---------hhcCCCEEEEcHHHHHHHHhhcccCCceeecccccc--------cc Confidence 111111112222233333311 112345678899888777641 11111111100 00 Q ss_pred CceEEEEecCceEEEEecccccccc-cceEEEEEecCCCccceeEEccccccccccccCCccccceeeee--eeeee-ee Q lcl|NC_015286. 351 SSTLVGTLNGRIKVYVDPYSANVAD-KHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFK--TRYGM-VS 426 (457) Q Consensus 351 ~~~~~G~l~~~~~vy~D~y~~~~~~-~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~--tRY~l-~~ 426 (457) ...-.++|. +++|+++.+.|.... .+.++..++ + +.++.....+. --.||-+-...++|. .|.|+ +. T Consensus 375 ~~~~~~~l~-G~pv~~~~~~p~~~~~~~~~~~~f~-~-----~~~~~~~~~~~--v~~d~~~~~~~~~~~~~~r~~~~v~ 445 (458) T protein:vir:10 375 LQGQVGRIY-GLPVVVSEYFPAKANSAEFAVIVYK-D-----NFVMPRQRAVT--VERERQAGKQRDAYYVTQRVNLQRY 445 (458) T ss_pred ccCcCceec-ceeeEEccccccccCCcceEEEEec-c-----cEEEEEeeceE--EEeecccCCCceEEEEEEEecceEe Confidence 011123565 689999988774321 222222221 1 00010000000 012544444455655 46665 56 Q ss_pred ccccccccCcccc Q lcl|NC_015286. 427 NPFAQGLTQGSGA 439 (457) Q Consensus 427 nP~~~~~~~~~~~ 439 (457) +|-+--...-.+. T Consensus 446 ~~~a~v~~~~aa~ 458 (458) T protein:vir:10 446 FANGVVSGTYAAS 458 (458) T ss_pred cccceEEEeeccC Confidence 6643322111111 No 37 >protein:vir:96123 Length: 274 # NCBI annotation: ORF013 # Family: family:all:522 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240078;genbank:gi:66395742;genbank:GeneID:5133103 Probab=92.42 E-value=0.011 Score=31.31 Aligned_cols=269 Identities=9% Similarity=0.037 Sum_probs=121.4 Q ss_pred ecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCC Q lcl|NC_015286. 111 YGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSS 190 (457) Q Consensus 111 Y~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~ 190 (457) -++.. +....-+.+|..+.+--..- ............+. .+.. ..|.... ...--.+..+|...++. T Consensus 1 ma~~~----T~~~d~i~Pev~s~~v~~~~----~~~~~~~~~~~~~~-~l~g-~~G~tv~--ip~~~~~g~~~~~~~g~- 67 (274) T protein:vir:96 1 MAQGT----TKVSNLIVPEVLAPMMQAEL----DKKLRFAQFADIDS-TLVG-QPGDTLT--FPAFTYSGDAQVIAEGE- 67 (274) T ss_pred CCccc----cchhhhhhhHHHHHHHHHHH----Hhhhhhcccccccc-cccC-CCCCEEE--EEeeccCCCccccCCCC- Confidence 11100 11112222222111100000 00000000000000 0000 0011000 00000122333333222 Q ss_pred CcccccceeEEEEEEEEeecccccceeeHHHHHhHH-HhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc Q lcl|NC_015286. 191 NTAFREMGFSIEKVTVTARARALKAEYSIELAQDLK-AIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT 269 (457) Q Consensus 191 ~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLk-AiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v 269 (457) ...+.++.+ ...+++.|-|+-.-+++ |+. +..+-|.-.+..+-++..++.+++++++..|.+....+ T Consensus 68 ~i~~~~it~--~~~~~~i~~~~~~~~i~-----D~~~~~~~~d~~~~~~~~~~~~~a~~~d~~i~~~l~~a~~~~----- 135 (274) T protein:vir:96 68 KIPVDQIGT--SKREAKVRKIGKGTELT-----DEAVLSGFGDPQGEAVRQHGLAIANKVDNDVLEALKGATLTV----- 135 (274) T ss_pred cCchhhccc--ceeEEEEEeeeceeeec-----HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----- Confidence 234555555 44445555555333333 332 33467899999999999999999999998875432211 Q ss_pred ccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccccccccc Q lcl|NC_015286. 270 ATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDD 349 (457) Q Consensus 270 ~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~ 349 (457) ..+.-| .+.+-.++.++..+ -..+++++++|.+++.|..-....|.+..+..+ .. T Consensus 136 ----------~~~~~~-~d~i~dA~~~l~d~---------~~~~~~ivv~p~~~~~L~k~~~~~f~~~~~~g~-----~~ 190 (274) T protein:vir:96 136 ----------EADITK-LDGLQTAIDKFNDE---------DLEPMVLFVNPLDAGGLRTSASDNFTRPTQLGD-----NI 190 (274) T ss_pred ----------Cccccc-HHHHHHHHHHhccc---------CCCceEEEeCHHHHHHHHhcccccccccccccc-----cc Confidence 111111 22222333333322 236899999999999997765556665543211 12 Q ss_pred CCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccc-cCCccccceeeeeeeeee-eec Q lcl|NC_015286. 350 TSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRA-INPDTFQPKIGFKTRYGM-VSN 427 (457) Q Consensus 350 ~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~-~Dp~s~qP~~g~~tRY~l-~~n 427 (457) ......|++. |++|++|...|.. .=+++| +|.-. |+.. .+. .+.. -||.+++-.+-...+||. ..| T Consensus 191 ~~~g~ig~~~-G~~Vi~s~~~p~~---t~~l~~-~gA~~-----~~~~-~~~-~vE~~Rd~~~~~d~i~~~~~yg~~~~~ 258 (274) T protein:vir:96 191 IVKGAFGEAL-GAVIVRSNKLNKG---EALLAK-KGAVK-----LITK-RDF-FLEKDRDASRKSTALYSDKHYVAYLYD 258 (274) T ss_pred eeecccceec-CeeEEEcCCCCcc---eEEEEe-Cccee-----eeec-CCc-ccccccchhhcccEEEEeeEEEEEEEc Confidence 3344588885 6899999766531 112222 12211 1111 011 1222 399999999999999999 678 Q ss_pred cccc-cccCcc-cccccccchh Q lcl|NC_015286. 428 PFAQ-GLTQGS-GALTANTNRY 447 (457) Q Consensus 428 P~~~-~~~~~~-~~~~~~~n~~ 447 (457) |-.. .++-.. ..+ | T Consensus 259 ~~~vv~~t~~~~~~~------~ 274 (274) T protein:vir:96 259 ESKVVKITKGAGDEV------M 274 (274) T ss_pred CccEEEEEcCccccc------C Confidence 7422 111111 111 1 No 38 >protein:vir:93742 Length: 274 # NCBI annotation: ORF013 # Family: family:all:522 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240459;genbank:gi:66396126;genbank:GeneID:5133511 Probab=92.28 E-value=0.012 Score=31.11 Aligned_cols=270 Identities=12% Similarity=0.034 Sum_probs=121.2 Q ss_pred eeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccC Q lcl|NC_015286. 107 MRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALD 186 (457) Q Consensus 107 MRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg 186 (457) |=... +.....+..|-.+.+=-..- . .........-.+. .+.. ..|... +...--....+|.+. T Consensus 1 ma~~~--------T~~~~~iiPev~~~~v~~~~---~-~~~~~~~~~~~~~-~l~g-~~G~tv--~ip~~~~~g~~~~~~ 64 (274) T protein:vir:93 1 MPQGI--------TKTSNQIIPEVLAPMMQAQL---E-KKLRFASFAEVDS-TLQG-QPGDTL--TFPAFVYSGDAQVVA 64 (274) T ss_pred CCccc--------eehhheechHHHHHHHHHHH---H-hhhhhcccccccc-cccC-CCCCEE--EEEeeccCCCccccc Confidence 11100 00011122221111100000 0 0000000000000 0000 001100 000000112333333 Q ss_pred CCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeec Q lcl|NC_015286. 187 DSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQ 266 (457) Q Consensus 187 ~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~ 266 (457) ++. ..++.++.+ ...+++.|-|+-.-+++=|. .+. -+-|.-.+..+-++..+...++++++..+.+..... T Consensus 65 eg~-~i~~~~it~--~~~~~~i~~~~~~~~i~D~~--~~~--~~~d~~~~~~~~~~~~~a~~~d~~~~~~~~~a~~~~-- 135 (274) T protein:vir:93 65 EGE-KIPTDILET--KKREAKIRKIAKGTSITDEA--LLS--GYGDPQGEQVRQHGLAHANKVDNDVLEALMGAKLTV-- 135 (274) T ss_pred CCC-ccccccccc--ceeEEEeeeecccccccHHH--HHh--hccchHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-- Confidence 222 234455544 55566666666333333332 222 357889999999999999999999998875543211 Q ss_pred cccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccc Q lcl|NC_015286. 267 NNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTG 346 (457) Q Consensus 267 ~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~ 346 (457) +...+ ..+-+-.++.++..+ -..+++++++|.+++.|.......|.++... + T Consensus 136 ----~~~~~----------~~d~i~dA~~~l~d~---------~~~~~~ivv~p~~~~~L~k~~~~~f~~~s~~-----g 187 (274) T protein:vir:93 136 ----NADIT----------KLNGLQSAIDKFNDE---------DLEPMVLFINPLDAGKLRGDASTNFTRATEL-----G 187 (274) T ss_pred ----ccccc----------CHHHHHHHHHHhhhc---------cCCccEEEeCHHHHHHHHhhhhhcccccccc-----c Confidence 11111 112222333333322 2468899999999999887655555544332 1 Q ss_pred cccCCceEEEEecCceEEEEecccccccccceEEEEE-ecCCCccceeEEccccccccccc-cCCccccceeeeeeeeee Q lcl|NC_015286. 347 VDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGY-KGTSPYDAGLFYCPYVPLQQVRA-INPDTFQPKIGFKTRYGM 424 (457) Q Consensus 347 ~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~-KG~~~~d~glfyaPYv~~~~~~~-~Dp~s~qP~~g~~tRY~l 424 (457) .....+...|++. |++||+|...| +|-.+-+ +|.-. .+..+ + ..+.. -|+++++=.+-...+||. T Consensus 188 ~~~~~~G~ig~~~-G~~Vi~s~~~p-----~~t~~l~~~gai~----~~~~~--~-~~vE~~Rd~~~~~d~i~~~~~y~~ 254 (274) T protein:vir:93 188 DDIIVKGAFGEAL-GAIIVRTNKLE-----AGTAILAKKGAVK----LILKR--D-FFLEVARDASTKTTALYSDKHYVA 254 (274) T ss_pred ccceeecccceec-CeeEEEcCCCC-----cceEEEEeCCeEE----EEecC--C-cccccccchhhcccEEEEEEEEEE Confidence 1223345688885 68999997655 2222222 22111 11111 1 11222 399999999999999999 Q ss_pred -eeccccc-cccCcccccccccchh Q lcl|NC_015286. 425 -VSNPFAQ-GLTQGSGALTANTNRY 447 (457) Q Consensus 425 -~~nP~~~-~~~~~~~~~~~~~n~~ 447 (457) ..||-.. .++-..+.+ . | T Consensus 255 ~~~~~~~~v~~t~~~~s~----~-~ 274 (274) T protein:vir:93 255 YLYDESKAVKITKGSGSL----E-M 274 (274) T ss_pred EEEcCCceEEEeeCcccc----C-C Confidence 7777422 112111111 1 1 No 39 >protein:vir:81227 Length: 413 # NCBI annotation: gp6, major capsid protein # Family: family:all:585 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456736;genbank:gi:157168379;hssp:P49861;interpro:IPR006444;uniprot:Q9MBJ9;genbank:GeneID:5580350 Probab=91.79 E-value=0.014 Score=30.71 Aligned_cols=333 Identities=14% Similarity=0.041 Sum_probs=119.8 Q ss_pred CchHHHHHHhhHhhccccc-----cccccchhhhhhh-------hhccchHHHH----HHHHHH----------hh-h-- Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESL-----PEIEDTHKRGVVA-------QLLENQEKAI----TEEASV----------LN-E-- 51 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~-----~~i~~~~~~~v~~-------~~~~n~~~~~----~~~~~~----------~~-e-- 51 (457) ++.+++.++=.-+.+.... ....+..++.... .+-++..+.. .+.+.. .. + T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (413) T protein:vir:81 32 DAKRERAKSVKANQDFLRELQEATAGSVDSEKSGELTRKGEGYKSIGEFFAKRAGDQIKQQAGGAQLNYSVGEYVAPRVK 111 (413) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHhhhHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHH Confidence 2222222211111110000 0000000000000 0000000000 000000 00 0 Q ss_pred hhhccccccccccccccccccceeh--hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc Q lcl|NC_015286. 52 TLQTTGYTGASTATGPVAGFDPVLI--SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE 129 (457) Q Consensus 52 ~~~~~g~~~~st~tg~i~~~~P~Lv--~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE 129 (457) +..+.. ...+++ .+....-|..+ .+++..-+..+..+++.++||++++.-+.-.+. . .... T Consensus 112 ~~~~~~-~~~~~~-~~~~~~vp~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~--~~~~------------ 174 (413) T protein:vir:81 112 AASDPA-STATLT-DEFQGGYGTTWNRNIIYRRREKLVVADLMDNLTMTNTTIKYLMEKA-N--RVVE------------ 174 (413) T ss_pred hhhhhh-hhcccc-cccccccchhhHHHHHHHHhhhhhHHhhcceeeccCCceeEEEecc-c--cccc------------ Confidence 000000 011111 11111112211 244555567788899999999998754322111 0 0000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEee Q lcl|NC_015286. 130 PNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTAR 209 (457) Q Consensus 130 a~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAK 209 (457) .. .... .+++...+ +....|.+..|.+.|.. T Consensus 175 --~~------------------------------------a~~v------~Eg~~~~~-~~~~~f~~i~~~~~k~~---- 205 (413) T protein:vir:81 175 --GG------------------------------------FKTV------AEGGKKPY-MRFADFDIVTESLSKIA---- 205 (413) T ss_pred --cc------------------------------------ccee------cCcccccc-cCcccceeeEeeeeeEE---- Confidence 00 0000 00000000 11123555555555544 Q ss_pred cccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec------cccch Q lcl|NC_015286. 210 ARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD------VDSNG 283 (457) Q Consensus 210 SRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~------~~~~g 283 (457) -....|-||.+|-- +.++.|.+-|+..|..-+|+.||.-- |. +-...|++... .... T Consensus 206 ---~~~~iS~ell~ds~-----~l~~~i~~~la~~~~~~~d~~~l~G~------G~--~~~~~Gi~~~~~~~~~~~~~~- 268 (413) T protein:vir:81 206 ---GLTKITDEMIEDYD-----FLVSYINARLLEELAIEEERQLLLGD------GT--GNNLTGLLKRDGIQTLAVSNK- 268 (413) T ss_pred ---EeehhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccC------CC--CCccccccccccccccccccc- Confidence 44568899999862 26788888888888888888877520 10 11123443321 1111 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhh----CCcceecccccccccccccccCCceEEEEec Q lcl|NC_015286. 284 RWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGM----AGVLDYSPALNGNNALTGVDDTSSTLVGTLN 359 (457) Q Consensus 284 rw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~----sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~ 359 (457) .+. +.....+-..+..-..+..+-+|+++.....|.. .|-.-+.+...+..+. -.....++|. T Consensus 269 ~~~--------~~~i~~~~~~~~~~~~~~~~~~vmn~~~~~~l~~lkd~~G~~l~~~~~~~~~~~-----~~~~~~~~l~ 335 (413) T protein:vir:81 269 DEL--------ADSIYKAMTNISLATPFQADALVINPLDYQELRLAKDANGQYYGGGVFQGQYGS-----GGIMLDPAPW 335 (413) T ss_pred chh--------HHHHHHHHHHhhhhccCCCcEEEEcHHHHHHHHHhhccCCceeccccccccccc-----cccccCceec Confidence 111 2222222222222234455667889988877654 1111111111111110 0111234564 Q ss_pred CceEEEEecccccccccceEEEEE-ecC-CCc---cceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc Q lcl|NC_015286. 360 GRIKVYVDPYSANVADKHYYVAGY-KGT-SPY---DAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL 433 (457) Q Consensus 360 ~~~~vy~D~y~~~~~~~dY~~vG~-KG~-~~~---d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~ 433 (457) +++|+++...|.. -+++|- +-. .-. .-.+=..+|... +-.+.|=.+=...||+. +.+|-+-.. T Consensus 336 -G~pv~~s~~~~~~----~~~~gd~~~~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~r~~~r~d~~~~~~~a~~~ 404 (413) T protein:vir:81 336 -GLRTVQSQVVPVG----KPVVGAFRSAASVLRKGGVRIDSTNTNVD------DFENNLITVRAEERVGLMVTFPEAIVQ 404 (413) T ss_pred -ceeeEEcCCCCcc----cEEEEecccEEEEEEecceEEEEeccccc------hhhcCcEEEEEEEeeccEEecccceEE Confidence 5688888776632 133332 100 000 001111122110 11233444555566666 444432211 Q ss_pred cCcccccccccchheeeeeeeecC Q lcl|NC_015286. 434 TQGSGALTANTNRYYRRVQVANLM 457 (457) Q Consensus 434 ~~~~~~~~~~~n~~~~r~~~~~l~ 457 (457) +.++..- T Consensus 405 -----------------l~~~~~~ 411 (413) T protein:vir:81 405 -----------------LDVAEVV 411 (413) T ss_pred -----------------EEecCCC Confidence 0000000 No 40 >protein:vir:3991 Length: 404 # NCBI annotation: major structural protein # Family: family:all:21 # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116499;genbank:gi:14251132;genbank:GeneID:921252 Probab=91.52 E-value=0.015 Score=30.51 Aligned_cols=330 Identities=13% Similarity=0.132 Sum_probs=136.9 Q ss_pred CchHHHHHHhhHhhcccc-c-ccc------ccchhh---hhhhhh------ccchHHHHHHHHHHh-------------- Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHES-L-PEI------EDTHKR---GVVAQL------LENQEKAITEEASVL-------------- 49 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~-~-~~i------~~~~~~---~v~~~~------~~n~~~~~~~~~~~~-------------- 49 (457) |+.++|+++|..+.+.-. + -++ .....+ .+...+ ++.+++.+.+.+... T Consensus 5 m~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (404) T protein:vir:39 5 LTVNQLNEAWIASGDKVTDFNDQINMALNDDNFSAEAMSELKNKRDNEKVRRDALREQLVEAQAEQVVNMREEEKGPLNK 84 (404) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc Confidence 778899999988754311 0 000 000010 111111 000111111100000 Q ss_pred --------------hhhhhcccc---------cccccccccccccccee-hhhhHHHhhhHhhhhceeeecCCCcceeee Q lcl|NC_015286. 50 --------------NETLQTTGY---------TGASTATGPVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIF 105 (457) Q Consensus 50 --------------~e~~~~~g~---------~~~st~tg~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIF 105 (457) +..-+..+. ...++++|... .-+.+ -.+++...+.....+++.++||+++++-+- T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~t~~~gg~~-iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (404) T protein:vir:39 85 SEYELKDKFVKEFVNMVRNPMAFLNTVSSKTETSGSDSAAGLT-IPQDIRTMINTLVRQYDSLQQYVRVESVSTSNGSRV 163 (404) T ss_pred chhhhHHHHHHHHHHHHhcchhhhhhhhhhhhhcccccCCcee-ccHHHHHHHHHHHHhhhhHHhhcceeeccCCcceEE Confidence 000000000 00111111111 11111 123344456667888999999999877653 Q ss_pred EeeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcc Q lcl|NC_015286. 106 AMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEAL 185 (457) Q Consensus 106 AMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaL 185 (457) -.|- .+..+ . ..+ .++++.. T Consensus 164 ~~~~--~~~~~-------~-------a~~--------------------------------------------v~Eg~~~ 183 (404) T protein:vir:39 164 YEKW--TDVTP-------L-------TVM--------------------------------------------DAEDGKI 183 (404) T ss_pred EEee--cCCcc-------c-------eee--------------------------------------------ecCcccc Confidence 2221 10000 0 000 0000000 Q ss_pred CCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeee Q lcl|NC_015286. 186 DDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGA 265 (457) Q Consensus 186 g~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk 265 (457) .+ .....|.++.|++.|..+-. .+|-||.+|-. .|.+++|.+-|+..|..-+|+.||.-. T Consensus 184 ~~-~~~~~f~~i~~~~~k~~~~~-------~iS~ell~ds~----~~l~~~i~~~l~~~~~~~~d~~il~g~-------- 243 (404) T protein:vir:39 184 PD-LDNPRLTIIKYLIKRYAGII-------TATNTLLKDTA----ENILAWLSSWIAKKVVVTRNQAIIAAM-------- 243 (404) T ss_pred cc-ccccceeeEEeeeeeEEeee-------hhHHHHHhhch----HHHHHHHHHHHHHHHHHHHHHHHHhcc-------- Confidence 00 11245777777777776654 48999999842 578999999999999999999998642 Q ss_pred ccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccccc Q lcl|NC_015286. 266 QNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALT 345 (457) Q Consensus 266 ~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~ 345 (457) -.+....++.++++ ...+++..... .......+|||+.....|.. +. ..+|.--+. T Consensus 244 g~~~~~~~~~~~~~----------i~~~~~~~~~~--------~~~~~a~~v~n~~~~~~L~~---lk---d~~G~~l~~ 299 (404) T protein:vir:39 244 GTVPKKPTIAKFDD----------VITMINTSVDP--------AIIATSSLLTNQSGLNKLAL---VK---TAEGKYLLE 299 (404) T ss_pred cccccccccccHHH----------HHHHHHHhhhh--------hhccCCEEEEcHHHHHHHHH---hh---ccCCceeec Confidence 11222233333211 11222211111 11123357899999888875 21 111110000 Q ss_pred ccccCCceEEEEecCceEEEE--ecccccccccce-EEEE-Eec----CCCccceeEEccccccccccccCCccccceee Q lcl|NC_015286. 346 GVDDTSSTLVGTLNGRIKVYV--DPYSANVADKHY-YVAG-YKG----TSPYDAGLFYCPYVPLQQVRAINPDTFQPKIG 417 (457) Q Consensus 346 ~~d~~~~~~~G~l~~~~~vy~--D~y~~~~~~~dY-~~vG-~KG----~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g 417 (457) .+.+. ...++|.| ++|++ |...|.....++ +++| ++. ....+-.+=..+|+.. +-...|=.+- T Consensus 300 -~~~~~-~~~~~l~G-~pV~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~r 370 (404) T protein:vir:39 300 -PDPTK-PNSYLIKG-KKVIVVADRWLPNSGSTVYPLYYGDMSQAITLFDRENMSLLPTNIGAG------AFETDTTKIR 370 (404) T ss_pred -cCcCC-CCcceecc-eeEEEecccccCccCCCccEEEEEeccccEEEEeecceEEEEeccchh------hhhhceeeEE Confidence 01111 11245543 45554 322222111111 1121 110 0000011112222110 0123444566 Q ss_pred eeeeeee-eeccccc------cccCccccccccc Q lcl|NC_015286. 418 FKTRYGM-VSNPFAQ------GLTQGSGALTANT 444 (457) Q Consensus 418 ~~tRY~l-~~nP~~~------~~~~~~~~~~~~~ 444 (457) ...||+. +.+|-+- ......+..-.|+ T Consensus 371 ~~~r~d~~~~~~~a~~~~~~~~~a~~~~~~~~~~ 404 (404) T protein:vir:39 371 VIDRFDVKTTDSEALVAGSFTAIADQVGNFTAGK 404 (404) T ss_pred EEeeeccEEecccceEEEEeeccccCCCCCCCCC Confidence 7788887 6777522 2233344455555 No 41 >protein:vir:10364 Length: 390 # NCBI annotation: head protein; major capsid subunit precursor # Family: family:all:585 # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858956;genbank:gi:32128421;genbank:GeneID:2648357 Probab=91.28 E-value=0.017 Score=30.34 Aligned_cols=323 Identities=15% Similarity=0.080 Sum_probs=132.6 Q ss_pred Cc--hHHHHHHhhHhhcccc--------ccccccchhhhhhhh--hccchHHHHHHHHHHhhhh---------------- Q lcl|NC_015286. 1 MS--LQQLQEKWAPVLNHES--------LPEIEDTHKRGVVAQ--LLENQEKAITEEASVLNET---------------- 52 (457) Q Consensus 1 ~~--~~~l~~~w~~~l~~~~--------~~~i~~~~~~~v~~~--~~~n~~~~~~~~~~~~~e~---------------- 52 (457) || +++|++++.-+.+.-. .-++.+-.++++-.. =+++.++.+.+..+.+.+. T Consensus 1 m~e~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (390) T protein:vir:10 1 MTDITSKLEATLANVTDSLRAFGERAVRDGELNASARSKVDELFATVGNLSAEVQAARQRVAELEGNGAGGDVQHVSVGD 80 (390) T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhh Confidence 77 6667777766554211 001111111111110 0011111111111111000 Q ss_pred -------------hhccccc------------ccccccc-cccccccee-hhhhHHHhhhHhhhhceeeecCCCcceeee Q lcl|NC_015286. 53 -------------LQTTGYT------------GASTATG-PVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIF 105 (457) Q Consensus 53 -------------~~~~g~~------------~~st~tg-~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIF 105 (457) ....+.. +...+++ +-.-.-|.+ -.++.+........+++.+.||++++.-+. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~ 160 (390) T protein:vir:10 81 LFVASEQFQASAGRWNDRSARATMNIKAALNTASTDAAGSAGALTTPNRLPGFITQPDARLTVRDLIGSGRTDSALIEYV 160 (390) T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhHHHHHHHhhhcccccccccccchhHHHHHHHHHHhhchhhhhcceeeccCCceEEE Confidence 0000000 0001111 111112211 224444445556677889999887653322 Q ss_pred EeeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcc Q lcl|NC_015286. 106 AMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEAL 185 (457) Q Consensus 106 AMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaL 185 (457) - ..+..+. +- -.+| T Consensus 161 ~----~~~~~~~-------a~-----------------------------------------------------~v~E-- 174 (390) T protein:vir:10 161 Q----ETGFVNN-------AA-----------------------------------------------------IVAE-- 174 (390) T ss_pred E----EecCCcc-------ee-----------------------------------------------------eecC-- Confidence 1 1100000 00 0001 Q ss_pred CCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeee Q lcl|NC_015286. 186 DDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGA 265 (457) Q Consensus 186 g~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk 265 (457) +...++-..++++++..+|..+....+|-||.||-- |.++.|.+-|+..|...||+.||.- . T Consensus 175 -----g~~~~~~~~~~~~i~~~~~k~~~~~~is~ell~d~~-----~l~~~i~~~l~~~~~~~~~~~il~G--------~ 236 (390) T protein:vir:10 175 -----GALKPESSLKFAKKTDTTHVIAHTMKATRQILSDAP-----QLASYMNNRLIRGLKVKEDAEILRG--------T 236 (390) T ss_pred -----CccccccccceeEEEEeeEEEEEeehhhHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHhhc--------C Confidence 012333344556666777777777889999999852 4788999999999999999988853 1 Q ss_pred ccccccceeEeeccc------cchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccc Q lcl|NC_015286. 266 QNNTATAGVFDLDVD------SNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALN 339 (457) Q Consensus 266 ~~~v~~~Gv~Dl~~~------~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~ 339 (457) -.+-...|++..... ..+--..+....+++++ ......++-+|+++.....|.. +. ..+ T Consensus 237 G~~~~p~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~v~n~~~~~~L~~---lk---d~~ 301 (390) T protein:vir:10 237 GANDGLLGLIPQATTYAAPTTIAGATRVDQLRLAMLQA---------SLAEYPASGIVINPIDWAAIEL---AK---DAN 301 (390) T ss_pred CCCccccccccccccccccccccccchHHHHHHHHHhh---------ccccCCCCEEEEcHHHHHHHHH---hh---cCC Confidence 111123344332111 01111122222333332 1234456678899998877764 21 111 Q ss_pred ccccccccccCCceEEEEecCceEEEEecccccccccceEEEE-EecCCCccceeEEccccccccccccC----Cccccc Q lcl|NC_015286. 340 GNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAG-YKGTSPYDAGLFYCPYVPLQQVRAIN----PDTFQP 414 (457) Q Consensus 340 ~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG-~KG~~~~d~glfyaPYv~~~~~~~~D----p~s~qP 414 (457) |. ....++. ....++| .+++|+++...|.+ + +++| ++ .+++.+...-+ .+...+ -.+.+= T Consensus 302 g~--~l~~~~~-~~~~~~l-~G~pv~~~~~~p~~---~-~~~gdf~------~~~~~~~~~~~-~i~~~~~~~~~~~~~~ 366 (390) T protein:vir:10 302 NQ--YLIGNAR-GTLTPTL-WGLPVVATQAMAPG---E-FLVGAFD------LAAQIFDQWDA-RVEIGYVNDDFQRNMV 366 (390) T ss_pred Cc--eeecCCc-CcCCcee-cceeeEEcCCCCCC---c-EEEEecc------ceEEEEEecce-EEEEeecccccccCcE Confidence 11 1111111 1113455 46799999887732 2 3333 21 11111111110 001111 112222 Q ss_pred eeeeeeeeee-eeccccccccCcccccccccchheeeeeee Q lcl|NC_015286. 415 KIGFKTRYGM-VSNPFAQGLTQGSGALTANTNRYYRRVQVA 454 (457) Q Consensus 415 ~~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~n~~~~r~~~~ 454 (457) .+-...|++. +.+|-+- -.+.++ T Consensus 367 ~~r~~~r~d~~v~~~~a~-----------------~~~~~a 390 (390) T protein:vir:10 367 TVLAEERLALVVYRPEAL-----------------ISGSFA 390 (390) T ss_pred EEEEEEeeccEEeccccE-----------------EEEEeC Confidence 3333457776 5555321 111111 No 42 >protein:vir:105334 Length: 276 # NCBI annotation: putative phage major capsid protein # Family: family:all:522 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950669;genbank:gi:119967839;genbank:GeneID:4643213 Probab=91.19 E-value=0.017 Score=30.28 Aligned_cols=265 Identities=9% Similarity=0.012 Sum_probs=120.0 Q ss_pred cCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcc Q lcl|NC_015286. 114 ERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTA 193 (457) Q Consensus 114 ~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~ 193 (457) ..+. .+.-..-+.+|-.+.+=-..... ..........+. .+.. ..|.......- -....+|.+.++. ..+ T Consensus 1 Ma~~-~T~l~d~i~Pev~~~~v~~~~~~----~~~~~~~~~~~~-~l~g-~~G~ti~iP~~--~~igda~~~~eg~-~i~ 70 (276) T protein:vir:10 1 MAQG-TTTKSTQIVPEVLAPMMQAELDK----KLRFAQFADIDS-TLVG-QPGDTLTFPAF--VYSGDATVVPEGQ-KIP 70 (276) T ss_pred CCcc-eeehhhhhchHHHHHHHHHHHHh----hhhhcccceecc-cccC-CCCCEEEeeee--cCCCccccccCCC-ccC Confidence 1110 01111222333222211000000 000000000000 0000 01111100000 0112344444332 223 Q ss_pred cccceeEEEEEEEEeecccccceeeHHHHHhHHH-hhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccc Q lcl|NC_015286. 194 FREMGFSIEKVTVTARARALKAEYSIELAQDLKA-IHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATA 272 (457) Q Consensus 194 f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkA-iHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~ 272 (457) ..++.+ .+.+++.+-|.-.-++| |+-+ .-+.|.-.+..+-++..|+..++.+++..|.+.... .+. T Consensus 71 ~~~lt~--~~~~a~i~~~~k~~~~t-----D~a~~~~~~dp~~~~~~~~~~~~a~~~d~~~~~~l~~~~~~------~~~ 137 (276) T protein:vir:10 71 VDKIET--NRREAKIHKIGKGTDIT-----DEALLSGYGDPQGEAVRQHGLAIANKVDNDVLEALRGTKLT------VSA 137 (276) T ss_pred cccccc--ceeeEEeehcccccccc-----HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccccc------ccc Confidence 444444 55555556555333333 3333 236799999999999999999999999887553321 111 Q ss_pred eeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCc Q lcl|NC_015286. 273 GVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSS 352 (457) Q Consensus 273 Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~ 352 (457) +.+++ +-+-..+.++..| -...++++++|.+++.|......+|...++.. .....+ T Consensus 138 ~~~t~----------d~i~~A~~~lgd~---------~~~~~~ivv~p~~~~~L~k~~~~~f~~~s~~g-----~~~~~~ 193 (276) T protein:vir:10 138 DIGTL----------AGLEAAIDTFDDE---------DLEPMVLFINPKDAGKLRSSASDNFTRATELG-----DNIIVK 193 (276) T ss_pred cccCH----------HHHHHHHHHhccc---------cCcccEEEEcHHHHHHHHHhcccccccccccc-----ccceec Confidence 22211 1111222222221 24688999999999988654444555443321 122344 Q ss_pred eEEEEecCceEEEEecccccccccceEEEEEe-cCCCccceeEEcccccccccccc-CCccccceeeeeeeeee-eeccc Q lcl|NC_015286. 353 TLVGTLNGRIKVYVDPYSANVADKHYYVAGYK-GTSPYDAGLFYCPYVPLQQVRAI-NPDTFQPKIGFKTRYGM-VSNPF 429 (457) Q Consensus 353 ~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~K-G~~~~d~glfyaPYv~~~~~~~~-Dp~s~qP~~g~~tRY~l-~~nP~ 429 (457) ...|++. +++|++|...| +|-.+-++ |.-.+ +... + ..+..- |++.++-.+--.-+||. ..||- T Consensus 194 G~ig~~~-G~~Vi~s~~~p-----~~t~~l~~~gAi~~----~~~~--~-~~vE~dRd~~~~~d~i~~~~~y~~~~~~~~ 260 (276) T protein:vir:10 194 GAFGEAL-GAVIVRSKKLD-----EGEAILAKRGAVKL----ITKR--D-FFLETDRDPSTKTTALYSDKHYVAYLYDES 260 (276) T ss_pred cccceec-ceeEEEcCCCC-----cceEEEEeccceee----eecC--C-ceeecccchhhcccEEEEeeEEEEEEEcCc Confidence 5678884 58999997654 22222222 22221 1111 1 112222 88899988888889998 77874 Q ss_pred -------cccccCccc Q lcl|NC_015286. 430 -------AQGLTQGSG 438 (457) Q Consensus 430 -------~~~~~~~~~ 438 (457) ..+..+..+ T Consensus 261 ~vv~~t~~~~~~~~~~ 276 (276) T protein:vir:10 261 KAVKVTKGAGTTDSGA 276 (276) T ss_pred ceEEEecCCcCCcCCC Confidence 112222112 No 43 >protein:vir:4092 Length: 390 # NCBI annotation: major capsid protein a # Family: family:all:635 # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510986;swissprot:trembl:q8w604;genbank:gi:17488508;uniprot:Q8W604;genbank:GeneID:1260361 Probab=90.79 E-value=0.019 Score=30.02 Aligned_cols=332 Identities=12% Similarity=0.080 Sum_probs=120.2 Q ss_pred Cc-hHHHHHHhhHhhccccccccccchhhhhhhhhccchHHHH-------------------------------HHHHHH Q lcl|NC_015286. 1 MS-LQQLQEKWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAI-------------------------------TEEASV 48 (457) Q Consensus 1 ~~-~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~-------------------------------~~~~~~ 48 (457) |. .+++.++..-+-.. -+-.+....+..=..+.+++..+.+ .+++++ T Consensus 1 ik~L~e~~~e~~e~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~ 79 (390) T protein:vir:40 1 MNNLDKKDSETLNISTA-FLNAIKEGATEAEQVTAFTNMAEQIQNNIIAQARKEVNREMNDNNVLASRGANALTSDESKY 79 (390) T ss_pred CchHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccHHHHHH Confidence 33 22222222221110 0000111000000000011100000 112222 Q ss_pred hhhhhhccccccccccccccccccceehh-hhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccc Q lcl|NC_015286. 49 LNETLQTTGYTGASTATGPVAGFDPVLIS-LIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFF 127 (457) Q Consensus 49 ~~e~~~~~g~~~~st~tg~i~~~~P~Lv~-l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlf 127 (457) ++++...++ ++.+... .-+.+.. ++++.-...+..+++-+.||++....|.. ..+ .+ ++.+ T Consensus 80 ~~~~~~~~~-----~~~gg~l-vP~~~~~~I~~~~~~~s~i~~~~~~~~~~~~~~~i~~----~~~--~~------~a~~ 141 (390) T protein:vir:40 80 YNEVIAGNG-----FAGVTAL-LPPTVFERVFEDLTVEHPLLSKINFVNTTATTEWIIS----VGD--VA------TAWW 141 (390) T ss_pred HHHHHhccC-----cccCccc-ccHHHHHHHHHHHHhhhhhhhhceeeecCCceeEEEE----EcC--Cc------ceee Confidence 222211111 1111110 0111111 33333344466788999999886655431 110 00 0000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEE Q lcl|NC_015286. 128 NEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVT 207 (457) Q Consensus 128 nEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVt 207 (457) ..+.+.. ....+..|.+..|++.|..+- T Consensus 142 ---------------------------------------------------~~E~~~~-~~~~~~~f~~i~l~~~k~~~~ 169 (390) T protein:vir:40 142 ---------------------------------------------------GPLCAEI-KEVLDNGFDKIQTGMYKLSAY 169 (390) T ss_pred ---------------------------------------------------ecccccc-CccccccceeeEeeeeeEEEe Confidence 0000000 011234677788877777653 Q ss_pred eecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec--------- Q lcl|NC_015286. 208 ARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD--------- 278 (457) Q Consensus 208 AKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~--------- 278 (457) ...|-||.+|-- .|.|++|.+.|+..|..-+|+.||.-= |+ -.+.|++--. T Consensus 170 -------i~iS~ell~ds~----~~l~~~i~~~la~~i~~~~~~a~l~G~------G~---~~P~Gil~~~~~~~~~~~~ 229 (390) T protein:vir:40 170 -------IPVCNAMLDLGP----SWLDQYVRTILGEAMALGLEAGIVNGS------GK---DQPIGMMRDLNNVTAGEHP 229 (390) T ss_pred -------ehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHhhhhccc------CC---Cccceeeeccccccccccc Confidence 357889999864 478999999999999999999998620 00 0112222100 Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEe Q lcl|NC_015286. 279 VDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTL 358 (457) Q Consensus 279 ~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l 358 (457) ....+-..-+-...++..+..-......+ ..+++.|++-....+..|...-++. |.++....+.+ T Consensus 230 ~~~~~~~t~~~~~~~~~~l~~~~~~~~~~-~~~~a~~i~n~~t~~~~l~~~~~~~--------------d~~G~~v~~~~ 294 (390) T protein:vir:40 230 VKTATPLTDLTPATLATKVMLPLTDNGKK-SVSDAILVINPADYWSKIYAATSYM--------------TPQGVWVTGIL 294 (390) T ss_pred cccccccchhhHHHHHHHHHHHhhcchhh-hhcCceEEEcchhHHHHHHHHhhcc--------------CCCCccccccC Confidence 00000000001112333333222222222 1234555544445556665422221 12222223333 Q ss_pred cCceEEEEeccccccc----ccceEEEEEecCCCccceeEEcccccccc----------ccccCCccccceeeeeeeeee Q lcl|NC_015286. 359 NGRIKVYVDPYSANVA----DKHYYVAGYKGTSPYDAGLFYCPYVPLQQ----------VRAINPDTFQPKIGFKTRYGM 424 (457) Q Consensus 359 ~~~~~vy~D~y~~~~~----~~dY~~vG~KG~~~~d~glfyaPYv~~~~----------~~~~Dp~s~qP~~g~~tRY~l 424 (457) .-+++|+++.+.|.+. ++.++++|-.+....+.+- -.|-.-++ ....||++|. ++=++.==+= T Consensus 295 ~~g~pvv~~~~~p~~~i~~Gd~s~~~i~~~~~~~v~~~~--~~~f~~~~~~~r~~~r~dg~v~~~~A~~-~l~~~~~~~~ 371 (390) T protein:vir:40 295 PVPLEIVQSVAVPVGKAVAGRAKDYFMGIGSEQVIRTST--EYRLLDDETLYYAKQYANGRPKDNSSFL-VFDITGLEGS 371 (390) T ss_pred CCceeEEEcCCCCCCcEEEEeeceEEEEeecceEEEecc--hhhhhcCcEEEEEEEEeCCEEecccceE-EEEeeccCCC Confidence 3468888888877421 1222233333333222111 00101111 1123555554 1111111010 Q ss_pred -eeccccccc-cCccccccccc Q lcl|NC_015286. 425 -VSNPFAQGL-TQGSGALTANT 444 (457) Q Consensus 425 -~~nP~~~~~-~~~~~~~~~~~ 444 (457) .+.|+.... .+.+. .++ T Consensus 372 ~~~~~~~~~~~~~~~~---~~~ 390 (390) T protein:vir:40 372 PAIDVNVVNNATPSET---PAE 390 (390) T ss_pred CCCCcceeeCCCCCCC---CCC Confidence 223332211 11110 011 No 44 >protein:vir:80376 Length: 435 # NCBI annotation: gp6, major capsid head protein # Family: family:all:21 # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111085;genbank:gi:134288639;genbank:GeneID:4960624 Probab=90.48 E-value=0.021 Score=29.83 Aligned_cols=335 Identities=14% Similarity=0.116 Sum_probs=114.8 Q ss_pred Cc--hHHHHHHhhHhhccc---------ccc--c-cccchhhhh-----------------hhhhccchHHHHHHHHHHh Q lcl|NC_015286. 1 MS--LQQLQEKWAPVLNHE---------SLP--E-IEDTHKRGV-----------------VAQLLENQEKAITEEASVL 49 (457) Q Consensus 1 ~~--~~~l~~~w~~~l~~~---------~~~--~-i~~~~~~~v-----------------~~~~~~n~~~~~~~~~~~~ 49 (457) |. .+.|.++..-+-+-+ ..+ . ......+.+ ...+..++...-......+ T Consensus 41 l~~ei~~l~~~i~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (435) T protein:vir:80 41 LSSKFNELTAQIERAEAAERMAAAAAVPVDPNPAAVTASAAAPVYAQPKAPEVKGAKMARMVRALAAARGDAQLASKLAI 120 (435) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhccccccccccccchhhhhHHHHHHHHHHHHhccchhHHHHHHHH Confidence 21 233333333221100 000 0 000000000 0001111000000000001 Q ss_pred hhhhhccccccccccccccccccceehh------hhHHHhhhHhhhhce-eeecCCCcceeeeEeeeeecccCCcccCcc Q lcl|NC_015286. 50 NETLQTTGYTGASTATGPVAGFDPVLIS------LIRRSMPQLIAYDIA-GVQPMTGPTGLIFAMRTNYGAERDPAASGY 122 (457) Q Consensus 50 ~e~~~~~g~~~~st~tg~i~~~~P~Lv~------l~RRa~~~LI~~DI~-GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~ 122 (457) .......-..+.++.+. .....|++ ++.+..+..+...+. =+-||+.+. +-+. +.. ++ T Consensus 121 ~~~~~~~~~~~~~~~~~---~~gg~lvP~~~~~~ii~~l~~~~~i~~~~~~~v~~~~~~-~~~p---~~~---~~----- 185 (435) T protein:vir:80 121 ERGFGEEVAMSLNTLSP---GAGGVLVPENLSSEVIELLRPKSVVRKLGARTLPLSNGN-ITIP---RLK---GG----- 185 (435) T ss_pred hhhhhhhhhhhhcccCC---CCCccccchhHHHHHHHHHhhhchhhhccceeeecCCCc-eEEE---EEe---CC----- Confidence 00000000001111111 11112222 334333444555542 233443332 1111 110 00 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEE Q lcl|NC_015286. 123 DEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIE 202 (457) Q Consensus 123 ~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIe 202 (457) .++. . .+| +..+++...+++ T Consensus 186 ~~a~---------------------------------------------~--------v~E-------~~~~~~~~~~f~ 205 (435) T protein:vir:80 186 AIVG---------------------------------------------Y--------IGA-------DTDIPTTQQQFD 205 (435) T ss_pred ccee---------------------------------------------e--------ecc-------Ccccccccccee Confidence 0000 0 001 012333444456 Q ss_pred EEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeecc--- Q lcl|NC_015286. 203 KVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDV--- 279 (457) Q Consensus 203 K~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~--- 279 (457) +++...+.-+-....|-||.+|-.- +.|.|+.|.+-|+..|...+++-||.- . | .+-...|++.... T Consensus 206 ~i~~~~~k~~~~~~is~ell~ds~~--~~~l~~~i~~~l~~a~~~~~d~a~l~G----~--G--~~~~p~Gi~~~~~~~~ 275 (435) T protein:vir:80 206 DLKLTAKKMAALVPIANDLIKYAGV--NPNVDQIVVGDLTAAIGAREDKAFIRD----D--G--TANTPKGLRFWALPGN 275 (435) T ss_pred eEEEeeEEEEEeehhhHHHHHhhcc--cHHHHHHHHHHHHHHHHHHHHHHhhcc----C--C--CCCcccceeecccccc Confidence 6666666666667789999998432 356788888888888888888888753 0 0 0011234332211 Q ss_pred ---ccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEE Q lcl|NC_015286. 280 ---DSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVG 356 (457) Q Consensus 280 ---~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G 356 (457) ..++ ..+......+.+-...+...........+|+++.....|.. +. ..+|. ....+.++ | T Consensus 276 ~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~vmn~~~~~~L~~---lk---d~~G~--~l~~~~~~----~ 339 (435) T protein:vir:80 276 VITASDG----STLQKIETDLGKAILALENADANLTQPGWIMAPRTFRFLEG---LR---DGNGN--KVYPELAN----G 339 (435) T ss_pred eeecccc----cchhhHHHHHHHHHHHhhccccccccCEEEEcHHHHHHHHh---hh---ccCCc--eeccCCCC----C Confidence 1111 00111111122221111111122344567899999988876 22 11221 11122233 4 Q ss_pred EecCceEEEEeccccccc------------ccceEEEEEecCCCccceeEEccccccccccccCCccc---cceeeeeee Q lcl|NC_015286. 357 TLNGRIKVYVDPYSANVA------------DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTF---QPKIGFKTR 421 (457) Q Consensus 357 ~l~~~~~vy~D~y~~~~~------------~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~---qP~~g~~tR 421 (457) +|. +++||++.+.|.+. ++.++++|-.+....+ ..+|.-+.+....--..| +=.+=..-| T Consensus 340 ~l~-G~pv~~~~~~p~~~~~~~~~~~i~~gd~s~~~i~~~~~~~i~----~~~~~~~~~~~~~~~~~f~~n~~~~r~~~r 414 (435) T protein:vir:80 340 MLK-GYPVGKTTQVPINLGEAGKESEIYFTDFGDVFIGEEETLEID----YSKEATYKDADGHMVSAFQRDQTLIRVIAK 414 (435) T ss_pred eEe-eeeeEEeccccccccCCCCcceEEEEEcccEEEEeecceEEE----EeccccccccccchhhhhhcCcceeeeeee Confidence 553 47899988766421 1122334444433321 122211100000000001 112223344 Q ss_pred eee-eeccccccccCccccccccc Q lcl|NC_015286. 422 YGM-VSNPFAQGLTQGSGALTANT 444 (457) Q Consensus 422 Y~l-~~nP~~~~~~~~~~~~~~~~ 444 (457) ++. +.+|-+-..=++ +--|. T Consensus 415 ~d~~~~~~~a~~~l~~---~~~~~ 435 (435) T protein:vir:80 415 NDFGPRHVESIAVLSG---VAWGA 435 (435) T ss_pred eCcEeecccceEEEec---cCCCC Confidence 444 333432211000 00000 No 45 >protein:vir:1886 Length: 385 # NCBI annotation: major capsid subunit precursor # Family: family:all:585 # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037666;genbank:gi:9634124;genbank:GeneID:1262513 Probab=89.83 E-value=0.024 Score=29.45 Aligned_cols=325 Identities=12% Similarity=0.051 Sum_probs=124.0 Q ss_pred Cc--hHHHHHHhhHhhccccccccccchhhhhhh-----------------h-------hccchHHHHHHHHHHhhhhhh Q lcl|NC_015286. 1 MS--LQQLQEKWAPVLNHESLPEIEDTHKRGVVA-----------------Q-------LLENQEKAITEEASVLNETLQ 54 (457) Q Consensus 1 ~~--~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~-----------------~-------~~~n~~~~~~~~~~~~~e~~~ 54 (457) |. +++..++..-+- +...++... .+++.. . ...+.++..++..+.+..... T Consensus 18 ~~~l~~~~~~e~~~~~--~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385) T protein:vir:18 18 MTQLFDAQKAEIESTG--QVSKQLQSD-LMKVQEELTKSGTRLFDLEQKLASGAENPGEKKSFSERAAEELIKSWDGKQG 94 (385) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHHHhhc Confidence 10 000000000000 000000000 000000 0 000011111111111111100 Q ss_pred cc-------cccccccccccccccccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccc Q lcl|NC_015286. 55 TT-------GYTGASTATGPVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAF 126 (457) Q Consensus 55 ~~-------g~~~~st~tg~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAl 126 (457) .. .....++..|.. ..|.+ -.+++++.......+++-++||+++..-+. +..+.... +. T Consensus 95 ~~~~~~~~~~~~~~~~~~g~~--i~~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~-------a~ 161 (385) T protein:vir:18 95 TFGAKTFNKSLGSDADSAGSL--IQPMQIPGIIMPGLRRLTIRDLLAQGRTSSNALEYV----REEVFTNN-------AD 161 (385) T ss_pred cchhhHHHhhhccccccCCce--ecchhhhHHHHHhhhccchhhhcceecccCcceEEE----EEecCCcc-------ee Confidence 00 000111111111 12222 224455556677888999999988753221 11110000 00 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEE Q lcl|NC_015286. 127 FNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTV 206 (457) Q Consensus 127 fnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tV 206 (457) + .+| +..+++-..++++++. T Consensus 162 -------~----------------------------------------------v~E-------~~~~~~~~~~~~~~~~ 181 (385) T protein:vir:18 162 -------V----------------------------------------------VAE-------KALKPESDITFSKQTA 181 (385) T ss_pred -------e----------------------------------------------ecc-------CccccccccceeEEEE Confidence 0 001 0123334445566666 Q ss_pred EeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHH Q lcl|NC_015286. 207 TARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWS 286 (457) Q Consensus 207 tAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~ 286 (457) +.|.-+-...+|-||.||-- +.++.|.+-|+..|..-+|+.||.- .-.+....|++........-+. T Consensus 182 ~~~k~~~~~~is~ell~d~~-----~l~~~i~~~la~a~~~~~d~~~l~G--------~g~~~~~~Gi~~~~~~~~~~~~ 248 (385) T protein:vir:18 182 NVKTIAHWVQASRQVMDDAP-----MLQSYINNRLMYGLALKEEGQLLNG--------DGTGDNLEGLNKVATAYDTSLN 248 (385) T ss_pred eeeeEEEeehhhHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHhc--------cCCCCccccccccccccccccc Confidence 66666677789999999842 3567788888888888888887742 1111112233222111100000 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEE Q lcl|NC_015286. 287 VEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYV 366 (457) Q Consensus 287 ~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~ 366 (457) . .-...+.....+.... ....+..+-+|+|++....|.. +. ..+|. ....++. ....++|.| ++|++ T Consensus 249 ~--~~~~~~d~i~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~---lk---d~~G~--~l~~~~~-~~~~~~l~G-~pV~~ 315 (385) T protein:vir:18 249 A--TGDTRADIIAHAIYQV-TESEFSASGIVLNPRDWHNIAL---LK---DNEGR--YIFGGPQ-AFTSNIMWG-LPVVP 315 (385) T ss_pred c--cccchHHHHHHHHHhh-ccccCCCCEEEEcHHHHHHHHH---hh---cCCCc--eeccCcc-cCCCceecc-eeeEE Confidence 0 0001122112222111 2234566788999999988765 21 11121 1111111 122356654 89999 Q ss_pred ecccccccccceEEEE-EecCCCccceeEEcccccccc-cccc----CC-ccccceeeeeeeeee-eeccccc-cccCcc Q lcl|NC_015286. 367 DPYSANVADKHYYVAG-YKGTSPYDAGLFYCPYVPLQQ-VRAI----NP-DTFQPKIGFKTRYGM-VSNPFAQ-GLTQGS 437 (457) Q Consensus 367 D~y~~~~~~~dY~~vG-~KG~~~~d~glfyaPYv~~~~-~~~~----Dp-~s~qP~~g~~tRY~l-~~nP~~~-~~~~~~ 437 (457) +.+.|.+. +++| +|. +++. +..... +... |+ ..-+=.+-...||+. +.+|-+- .++-.. T Consensus 316 ~~~~p~~~----~~~gd~~~------~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~r~~~~v~~~~a~~~~~~~a 383 (385) T protein:vir:18 316 TKAQAAGT----FTVGGFDM------ASQV--WDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFSS 383 (385) T ss_pred cCcCCCCc----EEEeeccc------EEEE--EEecceEEEEeccccchhhcCcEEEEEEEeeccEEecccceEEEEecc Confidence 99887432 3333 110 0000 000000 0000 11 111223334458877 6666533 122222 Q ss_pred cc Q lcl|NC_015286. 438 GA 439 (457) Q Consensus 438 ~~ 439 (457) +. T Consensus 384 a~ 385 (385) T protein:vir:18 384 GS 385 (385) T ss_pred CC Confidence 22 No 46 >protein:vir:191 Length: 385 # NCBI annotation: major head subunit precursor # Family: family:all:585 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037701;genbank:gi:9634158;genbank:GeneID:1262530 Probab=89.83 E-value=0.024 Score=29.45 Aligned_cols=325 Identities=12% Similarity=0.051 Sum_probs=124.0 Q ss_pred Cc--hHHHHHHhhHhhccccccccccchhhhhhh-----------------h-------hccchHHHHHHHHHHhhhhhh Q lcl|NC_015286. 1 MS--LQQLQEKWAPVLNHESLPEIEDTHKRGVVA-----------------Q-------LLENQEKAITEEASVLNETLQ 54 (457) Q Consensus 1 ~~--~~~l~~~w~~~l~~~~~~~i~~~~~~~v~~-----------------~-------~~~n~~~~~~~~~~~~~e~~~ 54 (457) |. +++..++..-+- +...++... .+++.. . ...+.++..++..+.+..... T Consensus 18 ~~~l~~~~~~e~~~~~--~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385) T protein:vir:19 18 MTQLFDAQKAEIESTG--QVSKQLQSD-LMKVQEELTKSGTRLFDLEQKLASGAENPGEKKSFSERAAEELIKSWDGKQG 94 (385) T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHHHHHHHHHHHHhhc Confidence 10 000000000000 000000000 000000 0 000011111111111111100 Q ss_pred cc-------cccccccccccccccccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccc Q lcl|NC_015286. 55 TT-------GYTGASTATGPVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAF 126 (457) Q Consensus 55 ~~-------g~~~~st~tg~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAl 126 (457) .. .....++..|.. ..|.+ -.+++++.......+++-++||+++..-+. +..+.... +. T Consensus 95 ~~~~~~~~~~~~~~~~~~g~~--i~~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~-------a~ 161 (385) T protein:vir:19 95 TFGAKTFNKSLGSDADSAGSL--IQPMQIPGIIMPGLRRLTIRDLLAQGRTSSNALEYV----REEVFTNN-------AD 161 (385) T ss_pred cchhhHHHhhhccccccCCce--ecchhhhHHHHHhhhccchhhhcceecccCcceEEE----EEecCCcc-------ee Confidence 00 000111111111 12222 224455556677888999999988753221 11110000 00 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEE Q lcl|NC_015286. 127 FNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTV 206 (457) Q Consensus 127 fnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tV 206 (457) + .+| +..+++-..++++++. T Consensus 162 -------~----------------------------------------------v~E-------~~~~~~~~~~~~~~~~ 181 (385) T protein:vir:19 162 -------V----------------------------------------------VAE-------KALKPESDITFSKQTA 181 (385) T ss_pred -------e----------------------------------------------ecc-------CccccccccceeEEEE Confidence 0 001 0123334445566666 Q ss_pred EeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHH Q lcl|NC_015286. 207 TARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWS 286 (457) Q Consensus 207 tAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~ 286 (457) +.|.-+-...+|-||.||-- +.++.|.+-|+..|..-+|+.||.- .-.+....|++........-+. T Consensus 182 ~~~k~~~~~~is~ell~d~~-----~l~~~i~~~la~a~~~~~d~~~l~G--------~g~~~~~~Gi~~~~~~~~~~~~ 248 (385) T protein:vir:19 182 NVKTIAHWVQASRQVMDDAP-----MLQSYINNRLMYGLALKEEGQLLNG--------DGTGDNLEGLNKVATAYDTSLN 248 (385) T ss_pred eeeeEEEeehhhHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHhc--------cCCCCccccccccccccccccc Confidence 66666677789999999842 3567788888888888888887742 1111112233222111100000 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEE Q lcl|NC_015286. 287 VEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYV 366 (457) Q Consensus 287 ~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~ 366 (457) . .-...+.....+.... ....+..+-+|+|++....|.. +. ..+|. ....++. ....++|.| ++|++ T Consensus 249 ~--~~~~~~d~i~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~---lk---d~~G~--~l~~~~~-~~~~~~l~G-~pV~~ 315 (385) T protein:vir:19 249 A--TGDTRADIIAHAIYQV-TESEFSASGIVLNPRDWHNIAL---LK---DNEGR--YIFGGPQ-AFTSNIMWG-LPVVP 315 (385) T ss_pred c--cccchHHHHHHHHHhh-ccccCCCCEEEEcHHHHHHHHH---hh---cCCCc--eeccCcc-cCCCceecc-eeeEE Confidence 0 0001122112222111 2234566788999999988765 21 11121 1111111 122356654 89999 Q ss_pred ecccccccccceEEEE-EecCCCccceeEEcccccccc-cccc----CC-ccccceeeeeeeeee-eeccccc-cccCcc Q lcl|NC_015286. 367 DPYSANVADKHYYVAG-YKGTSPYDAGLFYCPYVPLQQ-VRAI----NP-DTFQPKIGFKTRYGM-VSNPFAQ-GLTQGS 437 (457) Q Consensus 367 D~y~~~~~~~dY~~vG-~KG~~~~d~glfyaPYv~~~~-~~~~----Dp-~s~qP~~g~~tRY~l-~~nP~~~-~~~~~~ 437 (457) +.+.|.+. +++| +|. +++. +..... +... |+ ..-+=.+-...||+. +.+|-+- .++-.. T Consensus 316 ~~~~p~~~----~~~gd~~~------~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~r~~~~v~~~~a~~~~~~~a 383 (385) T protein:vir:19 316 TKAQAAGT----FTVGGFDM------ASQV--WDRMDATVEVSREDRDNFVKNMLTILCEERLALAHYRPTAIIKGTFSS 383 (385) T ss_pred cCcCCCCc----EEEeeccc------EEEE--EEecceEEEEeccccchhhcCcEEEEEEEeeccEEecccceEEEEecc Confidence 99887432 3333 110 0000 000000 0000 11 111223334458877 6666533 122222 Q ss_pred cc Q lcl|NC_015286. 438 GA 439 (457) Q Consensus 438 ~~ 439 (457) +. T Consensus 384 a~ 385 (385) T protein:vir:19 384 GS 385 (385) T ss_pred CC Confidence 22 No 47 >protein:vir:100172 Length: 394 # NCBI annotation: putative major head protein # Family: family:all:21 # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025031;genbank:gi:48697264;genbank:GeneID:2948270 Probab=89.67 E-value=0.025 Score=29.36 Aligned_cols=332 Identities=15% Similarity=0.178 Sum_probs=126.6 Q ss_pred CchHHHH---HHhhHhhcccc-c-cccccc---------hhhhhhh---hhccchHHHHHHHHHHhhhhhhcccc----- Q lcl|NC_015286. 1 MSLQQLQ---EKWAPVLNHES-L-PEIEDT---------HKRGVVA---QLLENQEKAITEEASVLNETLQTTGY----- 58 (457) Q Consensus 1 ~~~~~l~---~~w~~~l~~~~-~-~~i~~~---------~~~~v~~---~~~~n~~~~~~~~~~~~~e~~~~~g~----- 58 (457) .+.+++. +++.-+..... + -+|.+. ..+.+.. ..-+.......+.++.+.+.+...+. T Consensus 31 ~~~ee~~~~~~~~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 110 (394) T protein:vir:10 31 ASVDDFQKIKDDLTAAKARRDAINDQIKDLEAENKANSDPDKPVDNAQPNGTDLKKKPIDAKKKAINDFIHSHGKVIDNA 110 (394) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhcccccchhhhHHHHHHHHHHHHHhccchhhhhh Confidence 1111111 11111100000 0 000000 0000000 00000011111111122221111111 Q ss_pred -ccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccc Q lcl|NC_015286. 59 -TGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGG 137 (457) Q Consensus 59 -~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~ 137 (457) ....++.|.+.--.+..-.++++..+..+..+++.+.||+++++-+--.+. ..+ + .. T Consensus 111 ~~~~t~~~gg~~vP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~------~-------~~---- 168 (394) T protein:vir:10 111 AGHVTSTEAGVLIPEEIIYDPTAEVNSVVDLSTLVTKTPVTTPKGTYPILKR-----ATD------R-------FS---- 168 (394) T ss_pred hcccccccCceeccHHHHHHHHHHHHhhhhhhhhceeeeccCCceEEEEEec-----CCC------c-------cc---- Confidence 111112222222122223466666677788899999999998765553331 000 0 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhccC-CCCCCcccccceeEEEEEEEEeecccccce Q lcl|NC_015286. 138 PGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALD-DSSSNTAFREMGFSIEKVTVTARARALKAE 216 (457) Q Consensus 138 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg-~~s~~~~f~EMsFsIeK~tVtAKSRaLKAE 216 (457) -.+|.-. ...++..|.+..|.+.|. +-... T Consensus 169 ------------------------------------------~~~E~~~~~~~~~~~~~~v~l~~~k~-------~~~~~ 199 (394) T protein:vir:10 169 ------------------------------------------SVAELAENPALAEPEFEQVDWSVSTY-------RGAIP 199 (394) T ss_pred ------------------------------------------cccccccccccccccceeEEeeeeee-------Eeeeh Confidence 0001000 001123455555555555 44567 Q ss_pred eeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHH Q lcl|NC_015286. 217 YSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQ 296 (457) Q Consensus 217 YT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~q 296 (457) +|-||.+|- ..|.++.|.+-|+..|..-+|+.|+.-.- .|+..++.+ . .. ......++.. T Consensus 200 iS~ell~ds----~~~l~~~i~~~la~~~~~~~~~~il~g~g----~~~~~~~~~-----~---~~----~d~l~~~~~~ 259 (394) T protein:vir:10 200 LSEEAIADS----AVDLTSLVGQSINEKSVNTYNAMIAPVLQ----SFTAKATTT-----D---TL----VDSLKHILNV 259 (394) T ss_pred hHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHhhccc----ccccccccc-----c---cc----HHHHHHHHHh Confidence 999999984 25788999999999999999999987542 121111111 0 00 1112222222 Q ss_pred HHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccc--cccccCCceEEEEecCceEEEE-e-ccccc Q lcl|NC_015286. 297 IERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNAL--TGVDDTSSTLVGTLNGRIKVYV-D-PYSAN 372 (457) Q Consensus 297 i~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~--~~~d~~~~~~~G~l~~~~~vy~-D-~y~~~ 372 (457) ....+ +.+ .+|+++.....|.. |. ..+|.--+ .-...+.....++|. +++|++ | .+.+. T Consensus 260 ~~~~~---------~~a-~~vmn~~~~~~l~~---lk---d~~G~~i~~~~~~~~~~~~~~~~L~-G~PV~~~~~~~~~~ 322 (394) T protein:vir:10 260 DLDPA---------YSR-ALVVTQSLFNTLDT---LK---DKNGRYLLHDASDSITDGTAKGTVL-GVPVYVVGDALLGS 322 (394) T ss_pred hhhhh---------ccC-EEEecHHHHHHHHH---hh---ccCCCeeeeccccccccCCcccccc-cceeEEecccccCC Confidence 21221 223 46788888877765 21 11111000 001122233345664 456654 3 23221 Q ss_pred ccccce-EEEEE-ecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc-cCcccccccccchhe Q lcl|NC_015286. 373 VADKHY-YVAGY-KGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGALTANTNRYY 448 (457) Q Consensus 373 ~~~~dY-~~vG~-KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~~~~~~n~~~ 448 (457) .. .+. +++|- +. ++....- ....+...|...|.-.+-...|++. +.||-+... +..+ ...+.-++= T Consensus 323 ~~-~~~~i~~gd~s~------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~r~d~~~~~~~ai~~~~~~~--~~~~~~~~~ 392 (394) T protein:vir:10 323 AA-GDQKAFVGDLKR------GVLFADR-QQVTLAWEDSKIYGRYLGAAFRFGVKQADSNAGYFVTNTD--AASGSTSGT 392 (394) T ss_pred CC-CceEEEEeeccc------cEEEEee-cceEEEEecccccceeEEEEEEeccEEeccccEEEEEeec--ccCCCCCCC Confidence 11 111 22220 00 0000000 0001112234445555666778887 667664321 1000 111222233 Q ss_pred ee Q lcl|NC_015286. 449 RR 450 (457) Q Consensus 449 ~r 450 (457) +| T Consensus 393 ~~ 394 (394) T protein:vir:10 393 GK 394 (394) T ss_pred CC Confidence 33 No 48 >protein:vir:3613 Length: 272 # NCBI annotation: MHP # Family: family:all:522 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112699;genbank:gi:13786567;genbank:GeneID:921035 Probab=89.42 E-value=0.026 Score=29.23 Aligned_cols=268 Identities=12% Similarity=0.043 Sum_probs=115.9 Q ss_pred eeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccC Q lcl|NC_015286. 107 MRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALD 186 (457) Q Consensus 107 MRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg 186 (457) |= ++ .+....-+.+|-.+.+--.. .. .........-.+.. +.. ..|.......-. ....+|.+. T Consensus 1 ma-------~~-~T~~~d~iiPev~~~~v~~~---~~-~~~~~~~~~~~~~~-l~g-~~G~ti~iP~~~--~~gda~~~~ 64 (272) T protein:vir:36 1 MS-------KQ-KTTLADLVNPEVLAPIVSYE---LN-KALRFAPLAQVDTT-LQG-QPGNTLKFPAFT--YIGDAADVA 64 (272) T ss_pred CC-------Cc-ceehhhhhchHHHHHHHHHH---HH-hhhhhccccccccc-ccc-CCCCEEEEeeec--cCccccccC Confidence 11 10 00001111222111110000 00 00000000000000 000 011111110000 123334444 Q ss_pred CCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeec Q lcl|NC_015286. 187 DSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQ 266 (457) Q Consensus 187 ~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~ 266 (457) ++. ..+..++. ..+.+++-|-|+-.-++|=|. ++.-+-|.-.+..+-++..++.+++++|+..|-+.... T Consensus 65 eg~-~i~~~~lt--~~~~~~~i~~~~k~~~vtD~~----~~~~~~d~~~~~~~~~a~~~a~~~d~~i~~~l~~~~~~--- 134 (272) T protein:vir:36 65 EGG-EISLDKIG--TTTKSVTIKKAAKGTEITDEA----ALSGYGDPIGESNKQLGLSLANKVDDDLLSAAKTTSQT--- 134 (272) T ss_pred CCC-ccChhhcC--CcceeEeeehhhccccccHHH----HhhccchHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--- Confidence 332 22344454 455666667665322333222 12336789999999999999999999999887543321 Q ss_pred cccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccc Q lcl|NC_015286. 267 NNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTG 346 (457) Q Consensus 267 ~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~ 346 (457) + .+.+++ +.+-.++.++. |+ -...++++++|.+++.|..-.-....+...+. T Consensus 135 --~--~~~~~~----------d~i~~A~~~lg-d~--------~~~~~~ivv~p~~~~~L~k~~~~~~~~~~~~~----- 186 (272) T protein:vir:36 135 --V--STKANV----------DGVQAALDIFN-DE--------DAQAYVLIVNPKDAAKIRKDANAKNIGSEVGA----- 186 (272) T ss_pred --c--cccccH----------HHHHHHHHHhh-hc--------CCCceEEEEcHHHHHHHhcccccccccccccc----- Confidence 1 111111 11122223332 22 13467999999999887543322222221111 Q ss_pred cccCCceEEEEecCceEEEEecccccccccceEEEEE-ecCCCccceeEEccccccccccc-cCCccccceeeeeeeeee Q lcl|NC_015286. 347 VDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGY-KGTSPYDAGLFYCPYVPLQQVRA-INPDTFQPKIGFKTRYGM 424 (457) Q Consensus 347 ~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~-KG~~~~d~glfyaPYv~~~~~~~-~Dp~s~qP~~g~~tRY~l 424 (457) ....+..+|++.| ++|++|-..|.... -|..+.+ +|.-- +|.. ....+.+ -|+..++-.+--..+||+ T Consensus 187 -~~~~~G~ig~~~G-~~Vv~s~~~p~~~~-~~~~~~~~~gA~~-----~~~~--~~~~vE~~R~~~~~~d~i~~~~~y~~ 256 (272) T protein:vir:36 187 -NALINGTYADVLG-AQIVRSKKLAEGSA-LMFKIVSNSPALK-----LVLK--RGVQVETDRDIVTKTTVITADEHYAA 256 (272) T ss_pred -cceeeeccceecC-eeEEEeCCCCCCce-eEEEEEeccccee-----eeec--CCcccccccchhhcCcEEEEEEEEEE Confidence 1122234677754 89999988774332 2222222 22211 1111 1111222 289999998888899998 Q ss_pred -eeccccc-cccCccccc Q lcl|NC_015286. 425 -VSNPFAQ-GLTQGSGAL 440 (457) Q Consensus 425 -~~nP~~~-~~~~~~~~~ 440 (457) +.||-.. .++-+. + T Consensus 257 ~v~~~~~vv~~t~~g--~ 272 (272) T protein:vir:36 257 YLYDLTKVVNITFTG--V 272 (272) T ss_pred EEEcCccEEEEeecC--C Confidence 7787631 111110 0 No 49 >protein:vir:7771 Length: 330 # NCBI annotation: gp17 # Family: family:all:507 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817605;genbank:gi:29566035;genbank:GeneID:1259229 Probab=89.07 E-value=0.028 Score=29.06 Aligned_cols=286 Identities=13% Similarity=0.054 Sum_probs=124.7 Q ss_pred hhcccccccccc-cccccc-ccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc Q lcl|NC_015286. 53 LQTTGYTGASTA-TGPVAG-FDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE 129 (457) Q Consensus 53 ~~~~g~~~~st~-tg~i~~-~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE 129 (457) .....+.+..++ |.+-.. .-|.+. .+++++.++.+..+++-+.||+++.--| - +... ++ ++- T Consensus 1 m~~~~~~a~~~~~t~~~g~~i~~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~-p---~~~~--~~------~a~--- 65 (330) T protein:vir:77 1 MAGSTVPSTQVALTGDFSAFLTPEQSQDYFAEIEKTSIVQRIARKVPMGPTGISI-P---HWTG--AV------SAS--- 65 (330) T ss_pred CcccccchhhccccCCCcceechhHHHHHHHHHHhccchhhhcceeeccCCceEE-E---EEcC--Cc------cee--- Confidence 111111111111 111111 123333 2667777888899999999998865221 1 1110 00 000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEee Q lcl|NC_015286. 130 PNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTAR 209 (457) Q Consensus 130 a~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAK 209 (457) | . +| +..+++-..++++++...| T Consensus 66 ----~--------------------------------------------v--~E-------g~~~~~~~~~f~~i~~~~~ 88 (330) T protein:vir:77 66 ----W--------------------------------------------T--GE-------AERKPITKGSFGKQELEPV 88 (330) T ss_pred ----E--------------------------------------------e--cC-------CCccccccceeeEEEEeEE Confidence 0 0 01 1123333445577777777 Q ss_pred cccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhh---------hhheeeeeeccccccceeEeeccc Q lcl|NC_015286. 210 ARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRT---------IYTNAVKGAQNNTATAGVFDLDVD 280 (457) Q Consensus 210 SRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~---------l~tvA~rgk~~~v~~~Gv~Dl~~~ 280 (457) ..+-+..+|-||.+|- ..|.++.|.+-|+..|...||+-+|.- |+..+... ..+......+.... T Consensus 89 k~~~~~~is~ell~ds----~~~~~~~i~~~l~~ai~~~~~~~~l~G~g~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~ 162 (330) T protein:vir:77 89 KITTIFAESAEVVRLN----PLNYLNTMRTKIAEAIALKFDAAAIHGIDKPSAFKGYLAETTKV--VSLADTNLTTASGP 162 (330) T ss_pred EEEEeehhhHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccccccccc--ceeecccccccccc Confidence 7777778999999984 468999999999999999999999842 11111100 00001111111111 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhh----CCcceecccccccccccccccCCceEEE Q lcl|NC_015286. 281 SNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGM----AGVLDYSPALNGNNALTGVDDTSSTLVG 356 (457) Q Consensus 281 ~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~----sg~l~~~~~~~~~~~~~~~d~~~~~~~G 356 (457) .. ...+.+..++. .+.. .....+.+|+++.....|.. .|-.-+.|...+. ......-+ T Consensus 163 ~~--~~~~~l~~~~~-------~~~~--~~~~~~~~vmn~~~~~~l~~lkd~~G~~l~~~~~~~~-------~~~~~~~~ 224 (330) T protein:vir:77 163 QG--NAYLAVNNALS-------LLVN--SGKKWTGTLLDNVTEPILNTAVDGNGRPLFVESTYTE-------QVGAIREG 224 (330) T ss_pred cc--hhHHHHHHHHH-------hhhh--cCCCccEEEEcHHHHHHHHHHhccCCceeecCccccc-------cccccCCc Confidence 10 01111112211 2211 23345568899999988765 1111111111100 00111234 Q ss_pred EecCceEEEEeccccccc----------ccceEEEEEecCCCc----cceeEEccccccccc-cccCC-ccc---cceee Q lcl|NC_015286. 357 TLNGRIKVYVDPYSANVA----------DKHYYVAGYKGTSPY----DAGLFYCPYVPLQQV-RAINP-DTF---QPKIG 417 (457) Q Consensus 357 ~l~~~~~vy~D~y~~~~~----------~~dY~~vG~KG~~~~----d~glfyaPYv~~~~~-~~~Dp-~s~---qP~~g 417 (457) +|. +++|++....|... ++.++++|-.+..+. ++.+.+.- .+.. ....+ +-| +=.+= T Consensus 225 ~l~-G~PV~~~~~~p~~~~~~~~~~~~gd~s~~~i~~~~~~~i~~~~e~~~~~~~---~~~~~~~~~~~~~f~~~~~~~r 300 (330) T protein:vir:77 225 RIL-GRPTYVADNVVNGTVGNRVVGVMGDFSQVIWGQIGGLSFDVTDQATLDFGE---EQGGVWVPKLISLWQHNMVAVR 300 (330) T ss_pred eec-ceeeEEeccccCCCCCCccEEEEEecceEEEEEecCcEEEEeecceeeecc---cccccccccccchhhcCcEEEE Confidence 554 48999998776422 223334444433221 11211110 0000 00000 111 11222 Q ss_pred eeeeeee-eecccc--------ccccCccc Q lcl|NC_015286. 418 FKTRYGM-VSNPFA--------QGLTQGSG 438 (457) Q Consensus 418 ~~tRY~l-~~nP~~--------~~~~~~~~ 438 (457) ...|++. +.+|-+ -+.+.++. T Consensus 301 ~~~r~d~~v~~~~a~~~i~~~~~~~~~~~~ 330 (330) T protein:vir:77 301 CEAEFAFMVNDKDAFVKLTDQVAGTDPEEE 330 (330) T ss_pred EEEEeccEEecccceEEEEeccCCcCCCCC Confidence 3346655 455532 23333333 No 50 >protein:vir:6242 Length: 390 # NCBI annotation: gp36 # Family: family:all:21 # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813696;swissprot:trembl:q859c1;genbank:gi:29366756;interpro:IPR006444;uniprot:Q859C1;genbank:GeneID:1258897 Probab=89.01 E-value=0.029 Score=29.03 Aligned_cols=321 Identities=17% Similarity=0.126 Sum_probs=116.8 Q ss_pred CchHHHHHHhhHhhcc-ccc----c--ccccchhhhhh---hh--hccchHHHHHHHHHHhhhhh----hccc--cccc- Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNH-ESL----P--EIEDTHKRGVV---AQ--LLENQEKAITEEASVLNETL----QTTG--YTGA- 61 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~-~~~----~--~i~~~~~~~v~---~~--~~~n~~~~~~~~~~~~~e~~----~~~g--~~~~- 61 (457) |+.+.|+|+=.-+++. +.+ . +..+.-++.+- +. -++.|-+...+..+.+++.- +..+ .... T Consensus 4 ~~l~~l~e~r~~~~~e~~~L~~~~~~~~lt~e~~~~~~~l~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (390) T protein:vir:62 4 TTLSANFEARERATAELRTLTDEFAGKEMTDEAREKEERLITAVSDYDARIKRGIEAIKAIDPVTSLLSGLQGSGSGAQR 83 (390) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchh Confidence 6666666643322210 111 0 00000111110 00 00111111111111111100 0000 0000 Q ss_pred -----------------------------ccccccccccccee-hhhhHHHh-hhHhhhhceeeecCCCcceeeeEeeee Q lcl|NC_015286. 62 -----------------------------STATGPVAGFDPVL-ISLIRRSM-PQLIAYDIAGVQPMTGPTGLIFAMRTN 110 (457) Q Consensus 62 -----------------------------st~tg~i~~~~P~L-v~l~RRa~-~~LI~~DI~GVQPmTGPTGLIFAMRsr 110 (457) .+++++-...-|.+ -.++.... ...+...++-|-||++...+-+-... T Consensus 84 ~~~~~~~~~~r~~~~~~~r~~~~~~~~~~~t~~~~g~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~- 162 (390) T protein:vir:62 84 SADVDDDATLRAGNLGEARSFEFAPEKRDGTKAGNPNVLSRTLYGQLIAQAVERSAIMRGGATTFTTSDANPLDFTVIT- 162 (390) T ss_pred hcchHHHHHHhhhhhhhhHHHHhhhhhhcccccCCCccccccchHHHHHHHHhhhhhhhhcceeeecCCCceeEEEEEc- Confidence 00000000000110 01111110 11122333333333332222211110 Q ss_pred ecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCC Q lcl|NC_015286. 111 YGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSS 190 (457) Q Consensus 111 Y~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~ 190 (457) +. ... .. .+| T Consensus 163 -----~~--------------------------------------------------~~a------~w--v~E------- 172 (390) T protein:vir:62 163 -----GR--------------------------------------------------SSA------SI--VGE------- 172 (390) T ss_pred -----CC--------------------------------------------------cce------ee--ecc------- Confidence 00 000 00 111 Q ss_pred CcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccc Q lcl|NC_015286. 191 NTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTA 270 (457) Q Consensus 191 ~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~ 270 (457) +..++|-.-++++++..+|.-+-...+|-||.+|- .+|.+++|.+-|+..|..-+|..||.- -|+ T Consensus 173 ~~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds----~~~l~~~i~~~l~~~i~~~~d~~~l~G------~G~----- 237 (390) T protein:vir:62 173 TAEIPESYPATAQRSMGGFKYGFASVVSYEFATDQ----VLDLVGFLVSDAGPAIGDAMGRHFITG------TGQ----- 237 (390) T ss_pred cccccccccceeeeEeeeeeEEeehHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHhhhhcc------CCc----- Confidence 11233333344666667777777778999999993 367899999999999999999998852 011 Q ss_pred cceeEeeccccc--------hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccc Q lcl|NC_015286. 271 TAGVFDLDVDSN--------GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNN 342 (457) Q Consensus 271 ~~Gv~Dl~~~~~--------grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~ 342 (457) ..|++....... ..-..+....|++.+.. --+..+. .|+++.....|.. |+ ..+|.- T Consensus 238 p~Gi~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--------~~~~~a~-~vmn~~~~~~L~~---lk---d~~g~~ 302 (390) T protein:vir:62 238 PRGILTDASPATATFLATDTDSKVSDALIDLFHEVPS--------AYRANAK-YVVNDLRAAQMRK---LK---DANGQY 302 (390) T ss_pred cccccccccccccceecccccccchHHHHHHHHhhhh--------hhhcCCE-EEEchHHHHHHHH---hh---ccCCCe Confidence 122222111000 00000111122222211 1123333 5678887777755 21 111110 Q ss_pred cccccccCCceEEEEecCceEEEEeccccccc----ccceEEEEEecCCCccceeEEccccccccccccCCc--ccccee Q lcl|NC_015286. 343 ALTGVDDTSSTLVGTLNGRIKVYVDPYSANVA----DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPD--TFQPKI 416 (457) Q Consensus 343 ~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~----~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~--s~qP~~ 416 (457) ....+.+. ..-++|.| ++|+++.+.|.+. ++.+++++..++...+.+ .|+- +-|=.+ T Consensus 303 -l~~~~~~~-g~~~~l~G-~Pv~~~~~~p~~~i~~gd~s~~~i~~~~~~~v~~~--------------~~~~~~~~~~~~ 365 (390) T protein:vir:62 303 -LWQSGLTV-GAPSLFNG-KVVETDDGMPADKILFADLSKYRVRFAGSLRVDRS--------------VDAKFSTDQIVY 365 (390) T ss_pred -eecCCcCC-Cccceecc-cceEEecCCCCccEEEeeccceeEEeecceEEEee--------------ccccccCCcEEE Confidence 01111111 11246654 6888888777421 122223333332222111 1121 122233 Q ss_pred eeeeeeee-eecccccc-ccCcccc Q lcl|NC_015286. 417 GFKTRYGM-VSNPFAQG-LTQGSGA 439 (457) Q Consensus 417 g~~tRY~l-~~nP~~~~-~~~~~~~ 439 (457) =+..|++. +.||-+.. ++-.+++ T Consensus 366 ~~~~r~d~~~~~~~A~~~l~~~~~a 390 (390) T protein:vir:62 366 RFLQRADGLLVDARGAKVLTVTPGA 390 (390) T ss_pred EEEEEeCcEeechhheEEEEeecCC Confidence 34566766 66766432 2333333 No 51 >protein:vir:100247 Length: 425 # NCBI annotation: gp76 # Family: family:all:21 # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355412;genbank:gi:77864702;genbank:GeneID:3725969 Probab=89.00 E-value=0.029 Score=29.02 Aligned_cols=313 Identities=13% Similarity=0.104 Sum_probs=122.1 Q ss_pred Cc---------------hHHHHHH-----------------hhHhhcccc------ccccccchhhhhhhhhccchHHHH Q lcl|NC_015286. 1 MS---------------LQQLQEK-----------------WAPVLNHES------LPEIEDTHKRGVVAQLLENQEKAI 42 (457) Q Consensus 1 ~~---------------~~~l~~~-----------------w~~~l~~~~------~~~i~~~~~~~v~~~~~~n~~~~~ 42 (457) ++ ..+..++ ...-+..+. .+.....+|+.+...|.. T Consensus 50 ~k~~~~~~~~~~~~~~~~~e~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~l~~------ 123 (425) T protein:vir:10 50 FKAEHTKQLDAVKAGLPTSDALAKVDKVSADLEALQAAVDEANIKIAAAQMGANGVKPLRDPEYTEAFKAHVKR------ 123 (425) T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhhh------ Confidence 10 0000110 000000000 000000001000000000 Q ss_pred HHHHHHhhhhhhccccccccccccccccccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCc Q lcl|NC_015286. 43 TEEASVLNETLQTTGYTGASTATGPVAGFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASG 121 (457) Q Consensus 43 ~~~~~~~~e~~~~~g~~~~st~tg~i~~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~ 121 (457) .+.++.+++. .++.|.+. .-+.+. .+++++....+..+++.+.||+++..-+.- . .++. T Consensus 124 ~e~~~al~~~---------t~~~gG~l-vP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~~~~~~--~-----~~~~--- 183 (425) T protein:vir:10 124 GDVQAALNKG---------EDSEGGYL-TPIEWDRTITNKLVLISPMRQLCRVQPVSKAGFSKLF--N-----MGGT--- 183 (425) T ss_pred hhhHHHhhcC---------cCCCCcee-ccHhHHHHHHHHHHhhhhhhhhceeeeccCCceEEEE--E-----cCCc--- Confidence 0111111111 11111111 112222 255555566788889999999877653331 0 1100 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEE Q lcl|NC_015286. 122 YDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSI 201 (457) Q Consensus 122 ~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsI 201 (457) .+ .+ ..+++.... +....|.++.|++ T Consensus 184 --~a-------~w--------------------------------------------v~E~~~~~~-~~~~~f~~v~~~~ 209 (425) T protein:vir:10 184 --TS-------GW--------------------------------------------VGEASQRPQ-TNAATFQPLSFAS 209 (425) T ss_pred --ce-------ee--------------------------------------------ecccccccc-ccccccceeeeeh Confidence 00 00 000111110 1112466777766 Q ss_pred EEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec--- Q lcl|NC_015286. 202 EKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD--- 278 (457) Q Consensus 202 eK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~--- 278 (457) -|..+ ...+|-||.+|-. +|.+++|.+-|+..|..-+|+-||.-= - .+ ...|++... T Consensus 210 ~k~~~-------~i~iS~ell~ds~----~~l~~~i~~~la~ai~~~~d~~~l~G~--G--~~-----~p~Gil~~~~~~ 269 (425) T protein:vir:10 210 GEIYA-------NPAATQQILDDAE----IDLESWLATEVQTEFAKQEGKAFLAGD--G--TN-----KPNGLLTYIAGG 269 (425) T ss_pred eeeEe-------ehHhHHHHHhcch----hHHHHHHHHHHHHHHHHHHHhhhhccc--C--CC-----Ccceeeeccccc Confidence 66655 4568999999853 568899999999999999999888620 0 00 112222110 Q ss_pred ---------------cccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccc Q lcl|NC_015286. 279 ---------------VDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNA 343 (457) Q Consensus 279 ---------------~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~ 343 (457) ....+--..+....|++.+... -+..+ .+|+++.....|.. +. ..+|. T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~d~l~~l~~~l~~~--------~~~~a-~~vmn~~~~~~L~~---lk---D~~G~-- 332 (425) T protein:vir:10 270 ANAAKHPFGAIEVVNSGAAADITSDGIIDLVYDLPSA--------FTGNA-RFAMNRNTQRQVRK---LK---DGQGN-- 332 (425) T ss_pred cccccccccccccccccccccccHHHHHHHHhhhhhh--------hccCC-EEEEchHHHHHHHH---hh---cCCCc-- Confidence 0001111112223343333211 12333 45789988887765 21 11111 Q ss_pred ccccccCCceEEEEecCceEEEEecccccccc-cceEEEEEecCCCccceeEEcccccccccc-ccCCcc--ccceeeee Q lcl|NC_015286. 344 LTGVDDTSSTLVGTLNGRIKVYVDPYSANVAD-KHYYVAGYKGTSPYDAGLFYCPYVPLQQVR-AINPDT--FQPKIGFK 419 (457) Q Consensus 344 ~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~-~dY~~vG~KG~~~~d~glfyaPYv~~~~~~-~~Dp~s--~qP~~g~~ 419 (457) ..-..+......++|. +++|+++.+.|.... .+-+++| +-. ...+...- ..+. ..||-. .+-.+-.. T Consensus 333 ~l~~~~~~~g~~~~l~-G~PV~~~~~~p~~~~~~~~i~~G---d~~--~~~~i~~~---~~~~v~~d~~~~~~~~~~~~~ 403 (425) T protein:vir:10 333 YLWQPSYVAGQPATLA-GYPVTEVPDMPDVAANSTPILFG---DFQ--QTYLIIDR---IGVRVLRDPYTAKPYVLFYTT 403 (425) T ss_pred eeeccCccCCCCceec-ceeeEEecCcCCccCCccEEEEE---ehh--ccEEEEEe---cceEEEecccccCCcEEEEEE Confidence 1111111111235675 468888877663221 2233333 110 00111100 0111 112222 22223344 Q ss_pred eeeee-eeccccccc-cCcccc Q lcl|NC_015286. 420 TRYGM-VSNPFAQGL-TQGSGA 439 (457) Q Consensus 420 tRY~l-~~nP~~~~~-~~~~~~ 439 (457) .||+. +.+|-+... .-..+. T Consensus 404 ~r~d~~v~~~~A~~~l~~~as~ 425 (425) T protein:vir:10 404 KRVGGGLLNPEPMRAMKVAASE 425 (425) T ss_pred EEeccEeecccceEEEEeeccC Confidence 57777 677765422 111111 No 52 >protein:vir:9309 Length: 324 # NCBI annotation: head protein # Family: family:all:507 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803287;genbank:gi:29028597;genbank:GeneID:1258044 Probab=88.80 E-value=0.03 Score=28.92 Aligned_cols=293 Identities=10% Similarity=0.076 Sum_probs=128.1 Q ss_pred hccchHHHHHHHHHHhhhhhhcccccccccc---ccccccccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeee Q lcl|NC_015286. 34 LLENQEKAITEEASVLNETLQTTGYTGASTA---TGPVAGFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRT 109 (457) Q Consensus 34 ~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~---tg~i~~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRs 109 (457) ..++|+...+ .+++-+......-+.+.+++ +++. ..-+.+. .+++.+..+.+..+++-+-||++++--|.- T Consensus 1 ~~~~~~~~~~-~~~f~~~~~~~~~~~a~~~~~~~~~~~-liP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~~~ip~--- 75 (324) T protein:vir:93 1 MEQTQKLKLN-LQHFASNNVKPQVFNPDNVMMHEKKDG-TLLNDFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTF--- 75 (324) T ss_pred CchhHHHHHH-HHHHHHhhhhhhhcccccccccCCCcc-eechhHHHHHHHHHHhhchhhhhcceeeccCCceEEEE--- Confidence 2222222211 22221111111111222221 1111 1222232 366667778889999999999987643321 Q ss_pred eecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCC Q lcl|NC_015286. 110 NYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSS 189 (457) Q Consensus 110 rY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s 189 (457) ... ++ ++ .+ .+| T Consensus 76 -~~~--~~------~a-------~~----------------------------------------------v~E------ 87 (324) T protein:vir:93 76 -WAD--KP------GA-------YW----------------------------------------------VGE------ 87 (324) T ss_pred -Eec--Cc------ce-------ee----------------------------------------------ecC------ Confidence 100 00 00 00 011 Q ss_pred CCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc Q lcl|NC_015286. 190 SNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT 269 (457) Q Consensus 190 ~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v 269 (457) +..+++..-++++++++.|..+-....|-||.+|-. .|.++.|.+.|+..|...+++.+|.---+. . T Consensus 88 -g~~~~~~~~~f~~i~~~~~k~~~~~~iS~ell~ds~----~~l~~~i~~~l~~aia~~~d~a~l~G~g~~--------~ 154 (324) T protein:vir:93 88 -GQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY----SQFFEEMKPMIAEAFYKKFDEAGILNQGNN--------P 154 (324) T ss_pred -CccccccccceeEEEEEeEEEEEeehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------C Confidence 012233333445666666666666778999999963 468899999999999999999998642111 1 Q ss_pred ccceeEeecccc----chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccccc Q lcl|NC_015286. 270 ATAGVFDLDVDS----NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALT 345 (457) Q Consensus 270 ~~~Gv~Dl~~~~----~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~ 345 (457) ...|+++..... .+.-..+....++.+++. ..+....++|++.....|.. +.- .+|.. . T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~---------~~~~~~~~v~n~~~~~~L~~---l~d---~~G~~--~ 217 (324) T protein:vir:93 155 FGKSIAQSIEKTNKVIKGDFTQDNIIDLEALLED---------DELEANAFISKTQNRSLLRK---IVD---PETKE--R 217 (324) T ss_pred cCccccccccccceeccccccHHHHHHHHHhhhh---------ccCCCCEEEEcHHHHHHHHH---hhC---CCCCe--e Confidence 112222211100 011112223333333321 23445578999999988875 211 11211 1 Q ss_pred ccccCCceEEEEecCceEEEEecccccccccc--------eEEEEEecCCCccceeEEccccccccccccCC------cc Q lcl|NC_015286. 346 GVDDTSSTLVGTLNGRIKVYVDPYSANVADKH--------YYVAGYKGTSPYDAGLFYCPYVPLQQVRAINP------DT 411 (457) Q Consensus 346 ~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~d--------Y~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp------~s 411 (457) ..+.. .++|. +++|++.+..+ .+.. ++++|..++.+.+- ..+..+......|. .. T Consensus 218 ~~~~~----~~~l~-G~PVv~~~~~~--~~~~~i~~gdfs~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~f~~ 286 (324) T protein:vir:93 218 IYDRN----SDSLD-GLPVVNLKSSN--LKRGELITGDFDKLIYGIPQLIEYKI----DETAQLSTVKNEDGTPVNLFEQ 286 (324) T ss_pred ecCCC----CCccc-ceeeEeecCCC--CCcceEEEEecceEEEEEecCcEEEE----eecccccccccccccchhhhhc Confidence 11122 23443 46777765432 1222 23334433322111 11110000000000 11 Q ss_pred ccceeeeeeeeee-eeccccc--------cccCccccc Q lcl|NC_015286. 412 FQPKIGFKTRYGM-VSNPFAQ--------GLTQGSGAL 440 (457) Q Consensus 412 ~qP~~g~~tRY~l-~~nP~~~--------~~~~~~~~~ 440 (457) -|=.+=...|||. +.+|-+- +.+..++.+ T Consensus 287 n~~~~r~~~r~d~~v~~~~a~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:93 287 DMVALRATMHVALHIADDKAFAKLVPADKRTDSVPGEV 324 (324) T ss_pred CcEEEEEEEEeccEEecccceEEEecccccCCCCCCCC Confidence 1234445567777 5666421 223334444 No 53 >protein:vir:4830 Length: 397 # NCBI annotation: MPL-7201 # Family: family:all:21 # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038327;genbank:gi:9634653;genbank:GeneID:1262632 Probab=88.53 E-value=0.032 Score=28.80 Aligned_cols=323 Identities=12% Similarity=0.083 Sum_probs=124.1 Q ss_pred CchHHHH----------HHhhHhhcc------ccccccccchhhhhhhhhccc-hHHHHHHHHHHhhhhhhccc------ Q lcl|NC_015286. 1 MSLQQLQ----------EKWAPVLNH------ESLPEIEDTHKRGVVAQLLEN-QEKAITEEASVLNETLQTTG------ 57 (457) Q Consensus 1 ~~~~~l~----------~~w~~~l~~------~~~~~i~~~~~~~v~~~~~~n-~~~~~~~~~~~~~e~~~~~g------ 57 (457) .+.|++. ++=.-+.+. ..........++ ..+. .++..++..+.+.+.+.... T Consensus 34 ~~~ee~~~l~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (397) T protein:vir:48 34 VTAEELQAIKNERDTAKMKRDMFKEQYTEARANEVVNMSEEEKK-----PLTKSEEEVKAGFVKDFKNLVRGRYQNLLDS 108 (397) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-----cccchhhHHHHHHHHHHHHHHhhhhhHHHHH Confidence 1111111 110000000 000000000000 0011 11111222222222211111 Q ss_pred cccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccc Q lcl|NC_015286. 58 YTGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGG 137 (457) Q Consensus 58 ~~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~ 137 (457) +...+++.|.+.--....-.+++...+.....+++.++||++++|-+--.+. .+..+. ..+ T Consensus 109 ~~~~t~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------a~~--- 169 (397) T protein:vir:48 109 KTDASGSDAGLTIPQDIQTAIHTLVRQYDSLQEYVNVENVTTLTGSRVYEKW--ADITGL--------------AKL--- 169 (397) T ss_pred hhccCCccccccccHHHHHHHHHHHHHHHHHHhhhceeeccCCcceEEEEee--cCCCcc--------------eee--- Confidence 1111112222111111112344444566678899999999999886543331 110000 000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeeccccccee Q lcl|NC_015286. 138 PGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEY 217 (457) Q Consensus 138 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEY 217 (457) ....+... .+....|.++.|++.|..+ ...+ T Consensus 170 -----------------------------------------v~E~~~~~-~~~~~~~~~v~~~~~k~~~-------~~~i 200 (397) T protein:vir:48 170 -----------------------------------------DDEAGSIG-TNDDPKLYPIRYAIKRYAG-------ISTV 200 (397) T ss_pred -----------------------------------------eccccccc-cccccceeeEEeeheeeee-------ehhh Confidence 00001010 1112345556666555544 4679 Q ss_pred eHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHH Q lcl|NC_015286. 218 SIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQI 297 (457) Q Consensus 218 T~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi 297 (457) |-||.+|-. +|.+++|.+-|+..|..-+|+.||.-.-+ +....++.++ +....++..+ T Consensus 201 S~ell~ds~----~~l~~~v~~~l~~~~~~~~d~~il~G~g~--------~~~~~~~~~~----------d~i~~~~~~l 258 (397) T protein:vir:48 201 TNSLLADSA----ENILAWLSGWIAKKVVVTRNKAILEAIAT--------LPTKPTLTKW----------DDIIDLQAKV 258 (397) T ss_pred HHHHHhhch----HHHHHHHHHHHHHHHHHHHHHHHhhcccc--------cccccccccH----------HHHHHHHHHh Confidence 999999853 57899999999999999999999864311 1112222222 1123343343 Q ss_pred HHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEE--ecccccccc Q lcl|NC_015286. 298 ERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYV--DPYSANVAD 375 (457) Q Consensus 298 ~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~--D~y~~~~~~ 375 (457) ... ...+..+||++...+.|.. +.-+ +|.- ....+.+ ....++|.| ++|++ |...++... T Consensus 259 ~~~---------~~~~a~~v~n~~~~~~L~~---lkd~---~G~~-i~~~~~~-~~~~~~l~G-~PV~~~~~~~~~~~~~ 320 (397) T protein:vir:48 259 DPA---------IKQTSFFLTNTSGFTALKK---VKNA---FGDY-LMERDVK-SPTGYSIDG-FAVKEVADRWLANASS 320 (397) T ss_pred hhh---------hcCCCEEEECHHHHHHHHH---hhcC---CCce-eeccCcC-CCCCceecc-ceeEEecccccCCcCC Confidence 221 2234677899999988875 2111 1110 0011111 112346644 45543 323322111 Q ss_pred ----------cceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eecccccc-cc----Ccccc Q lcl|NC_015286. 376 ----------KHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQG-LT----QGSGA 439 (457) Q Consensus 376 ----------~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~-~~----~~~~~ 439 (457) .+|++++..+..+..- .++.. -+-...+-.+-...|++. +.||-+-. ++ ..+.. T Consensus 321 ~~~~~~~gd~~~~~~~~~~~~~~i~~----~~~~~------~~~~~~~~~~r~~~r~d~~~~~~~a~~~~~~~~~~~~~~ 390 (397) T protein:vir:48 321 GAMPLYFGDLKQAVTLFDRQQMSLLS----TNIGG------GAFETDTTKIRVIDRFDVVATDTESFVPASFKAIADQKG 390 (397) T ss_pred CceEEEEEeccceEEEEeecceEEEE----eccch------hhhhcCceeEEEEeeeccEEecccceEEEEecccccCCC Confidence 1233333333222111 11110 111223334444555555 44443110 00 00000 Q ss_pred cccccch Q lcl|NC_015286. 440 LTANTNR 446 (457) Q Consensus 440 ~~~~~n~ 446 (457) -...... T Consensus 391 ~~~~~~~ 397 (397) T protein:vir:48 391 NLGSTAV 397 (397) T ss_pred CccccCC Confidence 0001111 No 54 >protein:vir:107593 Length: 392 # NCBI annotation: major capsid protein, HK97 family # Family: family:all:21 # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338188;genbank:gi:77020144;genbank:GeneID:3703724 Probab=87.84 E-value=0.036 Score=28.49 Aligned_cols=319 Identities=15% Similarity=0.101 Sum_probs=130.1 Q ss_pred Cc-hHHHHHHhhHhh-----cccc----------ccccccchhhhhhhhhccchHHHHHHHHHHhhhhhhcccccccccc Q lcl|NC_015286. 1 MS-LQQLQEKWAPVL-----NHES----------LPEIEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTGYTGASTA 64 (457) Q Consensus 1 ~~-~~~l~~~w~~~l-----~~~~----------~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~ 64 (457) +. .+.|.++....- +.+. ..+....+|+.. ...+.+++..- +.+.++.............++ T Consensus 35 ~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~t~~ 112 (392) T protein:vir:10 35 MEEVRSLQKKIDLQRSLDEAETEERNNGREVETRNVDGEMEYRDVF-MKALRNKPLNA-EEREFLEDDLEQRAMSGLTGE 112 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHH-HHHHhcccccH-HHHHHHhhhhhhhhccccccC Confidence 11 223333332110 0000 001111122222 12222221110 111111111111111111111 Q ss_pred ccccc---cccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccc Q lcl|NC_015286. 65 TGPVA---GFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAY 141 (457) Q Consensus 65 tg~i~---~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~ 141 (457) .|... .+.+. +++.........+++++.||++++|-+.= .+.. .++ ++ . T Consensus 113 ~gg~~vP~~~~~~---ii~~~~~~s~l~~~~~~~~~~~~~~~~~~--~~~~--~~~------~a-------~-------- 164 (392) T protein:vir:10 113 DGGLVIPQDIQTQ---INELARSFDALEQYVTVEPVRTRSGSRVL--EKNS--DMI------PF-------A-------- 164 (392) T ss_pred CCceecchhHHHH---HHHHHHhhhhhhhhceeeeccCCceeEEE--Eeec--CCc------cc-------e-------- Confidence 22211 12233 34444456667789999999998875321 1111 000 00 0 Q ss_pred ccccccccccccccccccccccccccccccccccccchhhhhccCC-CCCCcccccceeEEEEEEEEeecccccceeeHH Q lcl|NC_015286. 142 DPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDD-SSSNTAFREMGFSIEKVTVTARARALKAEYSIE 220 (457) Q Consensus 142 ~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~-~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~E 220 (457) -.+|.-.. .+....|.++.|...|.. -...+|-| T Consensus 165 --------------------------------------~v~E~~~~~~~~~~~~~~v~l~~~k~~-------~~~~iS~e 199 (392) T protein:vir:10 165 --------------------------------------EITEMGEIPETDNPKFSNVQYAVKDRA-------GILPLSRS 199 (392) T ss_pred --------------------------------------eecccccccccccccceeEEeeeeeEE-------EeehhhHH Confidence 00010000 011234555555555544 45568999 Q ss_pred HHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHH-HHHHH Q lcl|NC_015286. 221 LAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLL-FQIER 299 (457) Q Consensus 221 LAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~-~qi~~ 299 (457) |.+|- ..|.+++|.+-|+..|..-+|.-|+.-.-+.. ..++.+. +....++ +.+.. T Consensus 200 ll~ds----~~~l~~~i~~~l~~~i~~~~d~~~~~g~g~~~---------~~~~~~~----------d~i~~~~~~~l~~ 256 (392) T protein:vir:10 200 LLQDS----DQNILKYVTKWLGKKSKVTRNVLILGVIEKLT---------KQAIKSL----------DDIKDVLNVKLDP 256 (392) T ss_pred HHhhh----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------ccCccCH----------HHHHHHHHHhhhh Confidence 99984 25678999999999999999999886432211 2222221 1122222 22211 Q ss_pred HHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceE Q lcl|NC_015286. 300 DANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYY 379 (457) Q Consensus 300 ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~ 379 (457) . ....-.+|+|+.....|.. ++- .+|. ..-..+......++|.|...|+++.. . T Consensus 257 ~---------~~~~a~~vm~~~~~~~L~~---lkd---~~G~--~l~~~~~~~~~~~tllG~~~v~~~~~---------~ 310 (392) T protein:vir:10 257 A---------ISPNAILLTNQDGFNYLDK---LKD---KDGK--YILQSDPTQKNKKLFAGTNPVVVVSN---------R 310 (392) T ss_pred h---------hccCCEEEEcHHHHHHHHH---hhc---cCCC--eEeecCccCCccccccCcccEEEecc---------c Confidence 1 1122346789999888876 211 1111 11111112233567777777776532 1 Q ss_pred EEEEecCCCccceeEEccccccc------ccc-ccCC------ccccceeeeeeeeee-eeccccccc-cCcccccc--- Q lcl|NC_015286. 380 VAGYKGTSPYDAGLFYCPYVPLQ------QVR-AINP------DTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGALT--- 441 (457) Q Consensus 380 ~vG~KG~~~~d~glfyaPYv~~~------~~~-~~Dp------~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~~~--- 441 (457) .++.+|...-+..++|+.+-..- ... .++| .+.|=.+-...|+|. +.+|-+-.. +-..+... T Consensus 311 ~~~~~~~~~~~~~~~~gdfs~~~~i~~~~~~~~~~~~~~~~~f~~~~~~~r~~~r~d~~v~~~~a~~~l~~~~~a~~~~~ 390 (392) T protein:vir:10 311 FLKSKGTTAKKAPLIIGDLKEAIVLFKREDMELASTDVGGKAFTRNTLDLRAIQRDDVQMWDNEAAVYGEIDLSAPVEQP 390 (392) T ss_pred ccCCCcccCCceEEEEEehhceEEEEeecceEEEEeccccchhhcCceEEEEEEeeccEEecccceEEEEecccccccCC Confidence 22222222223334444322100 000 1122 234555667778887 556653211 11111111 Q ss_pred cc Q lcl|NC_015286. 442 AN 443 (457) Q Consensus 442 ~~ 443 (457) .| T Consensus 391 ~~ 392 (392) T protein:vir:10 391 QG 392 (392) T ss_pred CC Confidence 12 No 55 >protein:vir:102082 Length: 392 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512315;genbank:gi:89152484;genbank:GeneID:3953075 Probab=87.84 E-value=0.036 Score=28.49 Aligned_cols=319 Identities=15% Similarity=0.101 Sum_probs=130.1 Q ss_pred Cc-hHHHHHHhhHhh-----cccc----------ccccccchhhhhhhhhccchHHHHHHHHHHhhhhhhcccccccccc Q lcl|NC_015286. 1 MS-LQQLQEKWAPVL-----NHES----------LPEIEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTGYTGASTA 64 (457) Q Consensus 1 ~~-~~~l~~~w~~~l-----~~~~----------~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~ 64 (457) +. .+.|.++....- +.+. ..+....+|+.. ...+.+++..- +.+.++.............++ T Consensus 35 ~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~t~~ 112 (392) T protein:vir:10 35 MEEVRSLQKKIDLQRSLDEAETEERNNGREVETRNVDGEMEYRDVF-MKALRNKPLNA-EEREFLEDDLEQRAMSGLTGE 112 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHH-HHHHhcccccH-HHHHHHhhhhhhhhccccccC Confidence 11 223333332110 0000 001111122222 12222221110 111111111111111111111 Q ss_pred ccccc---cccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccc Q lcl|NC_015286. 65 TGPVA---GFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAY 141 (457) Q Consensus 65 tg~i~---~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~ 141 (457) .|... .+.+. +++.........+++++.||++++|-+.= .+.. .++ ++ . T Consensus 113 ~gg~~vP~~~~~~---ii~~~~~~s~l~~~~~~~~~~~~~~~~~~--~~~~--~~~------~a-------~-------- 164 (392) T protein:vir:10 113 DGGLVIPQDIQTQ---INELARSFDALEQYVTVEPVRTRSGSRVL--EKNS--DMI------PF-------A-------- 164 (392) T ss_pred CCceecchhHHHH---HHHHHHhhhhhhhhceeeeccCCceeEEE--Eeec--CCc------cc-------e-------- Confidence 22211 12233 34444456667789999999998875321 1111 000 00 0 Q ss_pred ccccccccccccccccccccccccccccccccccccchhhhhccCC-CCCCcccccceeEEEEEEEEeecccccceeeHH Q lcl|NC_015286. 142 DPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDD-SSSNTAFREMGFSIEKVTVTARARALKAEYSIE 220 (457) Q Consensus 142 ~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~-~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~E 220 (457) -.+|.-.. .+....|.++.|...|.. -...+|-| T Consensus 165 --------------------------------------~v~E~~~~~~~~~~~~~~v~l~~~k~~-------~~~~iS~e 199 (392) T protein:vir:10 165 --------------------------------------EITEMGEIPETDNPKFSNVQYAVKDRA-------GILPLSRS 199 (392) T ss_pred --------------------------------------eecccccccccccccceeEEeeeeeEE-------EeehhhHH Confidence 00010000 011234555555555544 45568999 Q ss_pred HHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHH-HHHHH Q lcl|NC_015286. 221 LAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLL-FQIER 299 (457) Q Consensus 221 LAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~-~qi~~ 299 (457) |.+|- ..|.+++|.+-|+..|..-+|.-|+.-.-+.. ..++.+. +....++ +.+.. T Consensus 200 ll~ds----~~~l~~~i~~~l~~~i~~~~d~~~~~g~g~~~---------~~~~~~~----------d~i~~~~~~~l~~ 256 (392) T protein:vir:10 200 LLQDS----DQNILKYVTKWLGKKSKVTRNVLILGVIEKLT---------KQAIKSL----------DDIKDVLNVKLDP 256 (392) T ss_pred HHhhh----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------ccCccCH----------HHHHHHHHHhhhh Confidence 99984 25678999999999999999999886432211 2222221 1122222 22211 Q ss_pred HHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceE Q lcl|NC_015286. 300 DANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYY 379 (457) Q Consensus 300 ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~ 379 (457) . ....-.+|+|+.....|.. ++- .+|. ..-..+......++|.|...|+++.. . T Consensus 257 ~---------~~~~a~~vm~~~~~~~L~~---lkd---~~G~--~l~~~~~~~~~~~tllG~~~v~~~~~---------~ 310 (392) T protein:vir:10 257 A---------ISPNAILLTNQDGFNYLDK---LKD---KDGK--YILQSDPTQKNKKLFAGTNPVVVVSN---------R 310 (392) T ss_pred h---------hccCCEEEEcHHHHHHHHH---hhc---cCCC--eEeecCccCCccccccCcccEEEecc---------c Confidence 1 1122346789999888876 211 1111 11111112233567777777776532 1 Q ss_pred EEEEecCCCccceeEEccccccc------ccc-ccCC------ccccceeeeeeeeee-eeccccccc-cCcccccc--- Q lcl|NC_015286. 380 VAGYKGTSPYDAGLFYCPYVPLQ------QVR-AINP------DTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGALT--- 441 (457) Q Consensus 380 ~vG~KG~~~~d~glfyaPYv~~~------~~~-~~Dp------~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~~~--- 441 (457) .++.+|...-+..++|+.+-..- ... .++| .+.|=.+-...|+|. +.+|-+-.. +-..+... T Consensus 311 ~~~~~~~~~~~~~~~~gdfs~~~~i~~~~~~~~~~~~~~~~~f~~~~~~~r~~~r~d~~v~~~~a~~~l~~~~~a~~~~~ 390 (392) T protein:vir:10 311 FLKSKGTTAKKAPLIIGDLKEAIVLFKREDMELASTDVGGKAFTRNTLDLRAIQRDDVQMWDNEAAVYGEIDLSAPVEQP 390 (392) T ss_pred ccCCCcccCCceEEEEEehhceEEEEeecceEEEEeccccchhhcCceEEEEEEeeccEEecccceEEEEecccccccCC Confidence 22222222223334444322100 000 1122 234555667778887 556653211 11111111 Q ss_pred cc Q lcl|NC_015286. 442 AN 443 (457) Q Consensus 442 ~~ 443 (457) .| T Consensus 391 ~~ 392 (392) T protein:vir:10 391 QG 392 (392) T ss_pred CC Confidence 12 No 56 >protein:vir:102873 Length: 392 # NCBI annotation: major capsid protein, HK97 family # Family: family:all:21 # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338137;genbank:gi:77020198;genbank:GeneID:3703782 Probab=87.84 E-value=0.036 Score=28.49 Aligned_cols=319 Identities=15% Similarity=0.101 Sum_probs=130.1 Q ss_pred Cc-hHHHHHHhhHhh-----cccc----------ccccccchhhhhhhhhccchHHHHHHHHHHhhhhhhcccccccccc Q lcl|NC_015286. 1 MS-LQQLQEKWAPVL-----NHES----------LPEIEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTGYTGASTA 64 (457) Q Consensus 1 ~~-~~~l~~~w~~~l-----~~~~----------~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~ 64 (457) +. .+.|.++....- +.+. ..+....+|+.. ...+.+++..- +.+.++.............++ T Consensus 35 ~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~t~~ 112 (392) T protein:vir:10 35 MEEVRSLQKKIDLQRSLDEAETEERNNGREVETRNVDGEMEYRDVF-MKALRNKPLNA-EEREFLEDDLEQRAMSGLTGE 112 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHH-HHHHhcccccH-HHHHHHhhhhhhhhccccccC Confidence 11 223333332110 0000 001111122222 12222221110 111111111111111111111 Q ss_pred ccccc---cccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccc Q lcl|NC_015286. 65 TGPVA---GFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAY 141 (457) Q Consensus 65 tg~i~---~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~ 141 (457) .|... .+.+. +++.........+++++.||++++|-+.= .+.. .++ ++ . T Consensus 113 ~gg~~vP~~~~~~---ii~~~~~~s~l~~~~~~~~~~~~~~~~~~--~~~~--~~~------~a-------~-------- 164 (392) T protein:vir:10 113 DGGLVIPQDIQTQ---INELARSFDALEQYVTVEPVRTRSGSRVL--EKNS--DMI------PF-------A-------- 164 (392) T ss_pred CCceecchhHHHH---HHHHHHhhhhhhhhceeeeccCCceeEEE--Eeec--CCc------cc-------e-------- Confidence 22211 12233 34444456667789999999998875321 1111 000 00 0 Q ss_pred ccccccccccccccccccccccccccccccccccccchhhhhccCC-CCCCcccccceeEEEEEEEEeecccccceeeHH Q lcl|NC_015286. 142 DPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDD-SSSNTAFREMGFSIEKVTVTARARALKAEYSIE 220 (457) Q Consensus 142 ~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~-~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~E 220 (457) -.+|.-.. .+....|.++.|...|.. -...+|-| T Consensus 165 --------------------------------------~v~E~~~~~~~~~~~~~~v~l~~~k~~-------~~~~iS~e 199 (392) T protein:vir:10 165 --------------------------------------EITEMGEIPETDNPKFSNVQYAVKDRA-------GILPLSRS 199 (392) T ss_pred --------------------------------------eecccccccccccccceeEEeeeeeEE-------EeehhhHH Confidence 00010000 011234555555555544 45568999 Q ss_pred HHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHH-HHHHH Q lcl|NC_015286. 221 LAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLL-FQIER 299 (457) Q Consensus 221 LAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~-~qi~~ 299 (457) |.+|- ..|.+++|.+-|+..|..-+|.-|+.-.-+.. ..++.+. +....++ +.+.. T Consensus 200 ll~ds----~~~l~~~i~~~l~~~i~~~~d~~~~~g~g~~~---------~~~~~~~----------d~i~~~~~~~l~~ 256 (392) T protein:vir:10 200 LLQDS----DQNILKYVTKWLGKKSKVTRNVLILGVIEKLT---------KQAIKSL----------DDIKDVLNVKLDP 256 (392) T ss_pred HHhhh----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------ccCccCH----------HHHHHHHHHhhhh Confidence 99984 25678999999999999999999886432211 2222221 1122222 22211 Q ss_pred HHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceE Q lcl|NC_015286. 300 DANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYY 379 (457) Q Consensus 300 ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~ 379 (457) . ....-.+|+|+.....|.. ++- .+|. ..-..+......++|.|...|+++.. . T Consensus 257 ~---------~~~~a~~vm~~~~~~~L~~---lkd---~~G~--~l~~~~~~~~~~~tllG~~~v~~~~~---------~ 310 (392) T protein:vir:10 257 A---------ISPNAILLTNQDGFNYLDK---LKD---KDGK--YILQSDPTQKNKKLFAGTNPVVVVSN---------R 310 (392) T ss_pred h---------hccCCEEEEcHHHHHHHHH---hhc---cCCC--eEeecCccCCccccccCcccEEEecc---------c Confidence 1 1122346789999888876 211 1111 11111112233567777777776532 1 Q ss_pred EEEEecCCCccceeEEccccccc------ccc-ccCC------ccccceeeeeeeeee-eeccccccc-cCcccccc--- Q lcl|NC_015286. 380 VAGYKGTSPYDAGLFYCPYVPLQ------QVR-AINP------DTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGALT--- 441 (457) Q Consensus 380 ~vG~KG~~~~d~glfyaPYv~~~------~~~-~~Dp------~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~~~--- 441 (457) .++.+|...-+..++|+.+-..- ... .++| .+.|=.+-...|+|. +.+|-+-.. +-..+... T Consensus 311 ~~~~~~~~~~~~~~~~gdfs~~~~i~~~~~~~~~~~~~~~~~f~~~~~~~r~~~r~d~~v~~~~a~~~l~~~~~a~~~~~ 390 (392) T protein:vir:10 311 FLKSKGTTAKKAPLIIGDLKEAIVLFKREDMELASTDVGGKAFTRNTLDLRAIQRDDVQMWDNEAAVYGEIDLSAPVEQP 390 (392) T ss_pred ccCCCcccCCceEEEEEehhceEEEEeecceEEEEeccccchhhcCceEEEEEEeeccEEecccceEEEEecccccccCC Confidence 22222222223334444322100 000 1122 234555667778887 556653211 11111111 Q ss_pred cc Q lcl|NC_015286. 442 AN 443 (457) Q Consensus 442 ~~ 443 (457) .| T Consensus 391 ~~ 392 (392) T protein:vir:10 391 QG 392 (392) T ss_pred CC Confidence 12 No 57 >protein:vir:105004 Length: 392 # NCBI annotation: putative major capsid protein # Family: family:all:21 # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459969;genbank:gi:85701384;genbank:GeneID:3882145 Probab=87.84 E-value=0.036 Score=28.49 Aligned_cols=319 Identities=15% Similarity=0.101 Sum_probs=130.1 Q ss_pred Cc-hHHHHHHhhHhh-----cccc----------ccccccchhhhhhhhhccchHHHHHHHHHHhhhhhhcccccccccc Q lcl|NC_015286. 1 MS-LQQLQEKWAPVL-----NHES----------LPEIEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTGYTGASTA 64 (457) Q Consensus 1 ~~-~~~l~~~w~~~l-----~~~~----------~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~ 64 (457) +. .+.|.++....- +.+. ..+....+|+.. ...+.+++..- +.+.++.............++ T Consensus 35 ~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~t~~ 112 (392) T protein:vir:10 35 MEEVRSLQKKIDLQRSLDEAETEERNNGREVETRNVDGEMEYRDVF-MKALRNKPLNA-EEREFLEDDLEQRAMSGLTGE 112 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHH-HHHHhcccccH-HHHHHHhhhhhhhhccccccC Confidence 11 223333332110 0000 001111122222 12222221110 111111111111111111111 Q ss_pred ccccc---cccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccc Q lcl|NC_015286. 65 TGPVA---GFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAY 141 (457) Q Consensus 65 tg~i~---~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~ 141 (457) .|... .+.+. +++.........+++++.||++++|-+.= .+.. .++ ++ . T Consensus 113 ~gg~~vP~~~~~~---ii~~~~~~s~l~~~~~~~~~~~~~~~~~~--~~~~--~~~------~a-------~-------- 164 (392) T protein:vir:10 113 DGGLVIPQDIQTQ---INELARSFDALEQYVTVEPVRTRSGSRVL--EKNS--DMI------PF-------A-------- 164 (392) T ss_pred CCceecchhHHHH---HHHHHHhhhhhhhhceeeeccCCceeEEE--Eeec--CCc------cc-------e-------- Confidence 22211 12233 34444456667789999999998875321 1111 000 00 0 Q ss_pred ccccccccccccccccccccccccccccccccccccchhhhhccCC-CCCCcccccceeEEEEEEEEeecccccceeeHH Q lcl|NC_015286. 142 DPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDD-SSSNTAFREMGFSIEKVTVTARARALKAEYSIE 220 (457) Q Consensus 142 ~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~-~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~E 220 (457) -.+|.-.. .+....|.++.|...|.. -...+|-| T Consensus 165 --------------------------------------~v~E~~~~~~~~~~~~~~v~l~~~k~~-------~~~~iS~e 199 (392) T protein:vir:10 165 --------------------------------------EITEMGEIPETDNPKFSNVQYAVKDRA-------GILPLSRS 199 (392) T ss_pred --------------------------------------eecccccccccccccceeEEeeeeeEE-------EeehhhHH Confidence 00010000 011234555555555544 45568999 Q ss_pred HHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHH-HHHHH Q lcl|NC_015286. 221 LAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLL-FQIER 299 (457) Q Consensus 221 LAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~-~qi~~ 299 (457) |.+|- ..|.+++|.+-|+..|..-+|.-|+.-.-+.. ..++.+. +....++ +.+.. T Consensus 200 ll~ds----~~~l~~~i~~~l~~~i~~~~d~~~~~g~g~~~---------~~~~~~~----------d~i~~~~~~~l~~ 256 (392) T protein:vir:10 200 LLQDS----DQNILKYVTKWLGKKSKVTRNVLILGVIEKLT---------KQAIKSL----------DDIKDVLNVKLDP 256 (392) T ss_pred HHhhh----HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------ccCccCH----------HHHHHHHHHhhhh Confidence 99984 25678999999999999999999886432211 2222221 1122222 22211 Q ss_pred HHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceE Q lcl|NC_015286. 300 DANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYY 379 (457) Q Consensus 300 ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~ 379 (457) . ....-.+|+|+.....|.. ++- .+|. ..-..+......++|.|...|+++.. . T Consensus 257 ~---------~~~~a~~vm~~~~~~~L~~---lkd---~~G~--~l~~~~~~~~~~~tllG~~~v~~~~~---------~ 310 (392) T protein:vir:10 257 A---------ISPNAILLTNQDGFNYLDK---LKD---KDGK--YILQSDPTQKNKKLFAGTNPVVVVSN---------R 310 (392) T ss_pred h---------hccCCEEEEcHHHHHHHHH---hhc---cCCC--eEeecCccCCccccccCcccEEEecc---------c Confidence 1 1122346789999888876 211 1111 11111112233567777777776532 1 Q ss_pred EEEEecCCCccceeEEccccccc------ccc-ccCC------ccccceeeeeeeeee-eeccccccc-cCcccccc--- Q lcl|NC_015286. 380 VAGYKGTSPYDAGLFYCPYVPLQ------QVR-AINP------DTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGALT--- 441 (457) Q Consensus 380 ~vG~KG~~~~d~glfyaPYv~~~------~~~-~~Dp------~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~~~--- 441 (457) .++.+|...-+..++|+.+-..- ... .++| .+.|=.+-...|+|. +.+|-+-.. +-..+... T Consensus 311 ~~~~~~~~~~~~~~~~gdfs~~~~i~~~~~~~~~~~~~~~~~f~~~~~~~r~~~r~d~~v~~~~a~~~l~~~~~a~~~~~ 390 (392) T protein:vir:10 311 FLKSKGTTAKKAPLIIGDLKEAIVLFKREDMELASTDVGGKAFTRNTLDLRAIQRDDVQMWDNEAAVYGEIDLSAPVEQP 390 (392) T ss_pred ccCCCcccCCceEEEEEehhceEEEEeecceEEEEeccccchhhcCceEEEEEEeeccEEecccceEEEEecccccccCC Confidence 22222222223334444322100 000 1122 234555667778887 556653211 11111111 Q ss_pred cc Q lcl|NC_015286. 442 AN 443 (457) Q Consensus 442 ~~ 443 (457) .| T Consensus 391 ~~ 392 (392) T protein:vir:10 391 QG 392 (392) T ss_pred CC Confidence 12 No 58 >protein:vir:100884 Length: 389 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358764;genbank:gi:78000028;genbank:GeneID:3726155 Probab=87.68 E-value=0.037 Score=28.42 Aligned_cols=328 Identities=14% Similarity=0.184 Sum_probs=123.6 Q ss_pred CchH---HHHHHhhHhhcccc-c-cccccc------------hhhhhhhhhccchHHHHHHHHHHhhhhhhccc-----c Q lcl|NC_015286. 1 MSLQ---QLQEKWAPVLNHES-L-PEIEDT------------HKRGVVAQLLENQEKAITEEASVLNETLQTTG-----Y 58 (457) Q Consensus 1 ~~~~---~l~~~w~~~l~~~~-~-~~i~~~------------~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g-----~ 58 (457) .+.+ +|.+++.-+...-. + -+|... .........-.++.. ..++++.+.+.+...+ . T Consensus 31 ~~~e~~~~l~~ei~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lr~~~~~~~~~ 109 (389) T protein:vir:10 31 ASVDDFQKIKDDLTAAKARRDAINDQIKALEAEKPAEPKTEPKDDGSKKGTDLSKKP-IDAKKKAINDFIHSHGKVIDAT 109 (389) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccchhH-HHHHHHHHHHHhhcchhhhhhh Confidence 1111 11111111100000 0 000000 000000000000000 0111112222211111 1 Q ss_pred ccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccccccc Q lcl|NC_015286. 59 TGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGP 138 (457) Q Consensus 59 ~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~ 138 (457) ...+++.|...--....-.++++..+..+..+++.+.||+++++-+--++. . .+.. +...| T Consensus 110 ~~~t~~~gg~~vP~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~--~~~~------~~~~E--------- 170 (389) T protein:vir:10 110 SKVTSTEAGVLIPEEIIYDPTAEVNSVVDLSTLVTKTPVTTPKGTYPILKR--A--TDRF------SSVAE--------- 170 (389) T ss_pred cccccCCcceeehHHHHHHHHHHHHhhhhHHhhcceeeccCCeeEEEEEec--C--CCcc------ccccc--------- Confidence 111222222221111222356666677788899999999988764333321 0 0000 00000 Q ss_pred cccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceee Q lcl|NC_015286. 139 GAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYS 218 (457) Q Consensus 139 ~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT 218 (457) .++. ...+...|.+..+++.|..+ -..+| T Consensus 171 ------------------------------------------~~~~--~~~~~~~~~~i~~~~~k~~~-------~~~iS 199 (389) T protein:vir:10 171 ------------------------------------------LAEN--PKLAEPEFNKVDWSVATYRG-------AIPLS 199 (389) T ss_pred ------------------------------------------cccc--cccccccceeeeeeheeeEe-------eehhh Confidence 0000 00112356666666666544 45689 Q ss_pred HHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHH Q lcl|NC_015286. 219 IELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIE 298 (457) Q Consensus 219 ~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~ 298 (457) -||.+|- ..|-+++|.+-|...+..-+|..|+.-+-+ ++..++ .+... ......+ +... T Consensus 200 ~ell~ds----~~~l~~~i~~~la~~~~~~~~~~i~~g~~~----~~~~~~--~~~~~----------~d~l~~~-~~~~ 258 (389) T protein:vir:10 200 EEAIADS----AVDLTALVGQSIKEKSVNTYNAMIAPVLQS----FTAKKT--TTDTL----------VDSLKHI-LNVD 258 (389) T ss_pred HHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----cccccc--ccccc----------HHHHHHH-HHhh Confidence 9999984 246788999999999999999999865421 111111 11111 0112222 1111 Q ss_pred HHHHHHHHhcccCCccEEEEchhHHHHHhh----CCcceecccccccccccccccCCceEEEEecCceEEEE-e-ccccc Q lcl|NC_015286. 299 RDANAIGQQTRRGKGNILICSADVASALGM----AGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYV-D-PYSAN 372 (457) Q Consensus 299 ~ean~i~~~T~rg~gn~~i~S~~va~~L~~----sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~-D-~y~~~ 372 (457) ... .+ ..-+|+++.....|.. -|-.-+.|... +.+.....++|.| ++||+ | ...+. T Consensus 259 ~~~--------~~-~a~~~~n~~~~~~L~~lkd~~G~~i~~~~~~--------~~~~~~~~~~l~G-~pV~~~~~~~~~~ 320 (389) T protein:vir:10 259 LDP--------AY-SRALVVTQSLFNTLDTLKDKNGRYLLHDASD--------SITDGTAKGTILG-VPVYVVGDTLLGS 320 (389) T ss_pred hhh--------hh-CcEEEecHHHHHHHHHhhccCCCeeeecCcc--------ccccccccccccc-ceeEEecccccCC Confidence 111 12 2356788888877765 12211211111 1122233456644 56554 3 22222 Q ss_pred ccccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc-c-Cccccccccc Q lcl|NC_015286. 373 VADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL-T-QGSGALTANT 444 (457) Q Consensus 373 ~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~-~-~~~~~~~~~~ 444 (457) ....--+++|=- ..+.++... ....+...|-..|.-.+...-|++. +.||-+-.. + .....-..++ T Consensus 321 ~~~~~~~~~gd~-----~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~r~d~~~~~~~a~~~~~~~~~~~~~~~~ 389 (389) T protein:vir:10 321 LAGDQKAFVGDL-----KRGVLFTDR-QQVTLAWEDSKIYGKYLGAAFRFGVQKADSKAGYFVTNTDVPGSALGK 389 (389) T ss_pred CCCceEEEEeec-----cccEEEEee-cceEEEeeccccccceEEEEEEeccEEecccceEEEEeeccCCCCCCC Confidence 111111222200 000000000 0011112233444556667779988 667643211 0 0011111222 No 59 >protein:vir:97053 Length: 390 # NCBI annotation: putative head protein # Family: family:all:585 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453565;genbank:gi:84662600;genbank:GeneID:5142468 Probab=87.61 E-value=0.038 Score=28.40 Aligned_cols=324 Identities=15% Similarity=0.084 Sum_probs=131.0 Q ss_pred Cc--hHHHHHHhhHhhccccc--------cccccchhhhhhhhh--ccchHHHHHHHHHHhhhh---------------- Q lcl|NC_015286. 1 MS--LQQLQEKWAPVLNHESL--------PEIEDTHKRGVVAQL--LENQEKAITEEASVLNET---------------- 52 (457) Q Consensus 1 ~~--~~~l~~~w~~~l~~~~~--------~~i~~~~~~~v~~~~--~~n~~~~~~~~~~~~~e~---------------- 52 (457) |+ +++|.+++.-+++.-.. -++....++++-+.. +++.++.+.+....+.+. T Consensus 1 m~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~e~~~l~~~i~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (390) T protein:vir:97 1 MTDITAKLEATLANVTDSLKAFGERAVRDGELNASARSKVDELFATVGNLSAEVQAARQRVAELEGNGAGGDVQHVSVGD 80 (390) T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchh Confidence 87 67788888887764221 001111111111100 001111111111000000 Q ss_pred -----------h--hccc-----------cc-ccccccc--ccccccceehhhhHHHhhhHhhhhceeeecCCCcceeee Q lcl|NC_015286. 53 -----------L--QTTG-----------YT-GASTATG--PVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIF 105 (457) Q Consensus 53 -----------~--~~~g-----------~~-~~st~tg--~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIF 105 (457) . ...+ .. ..+++++ ...-....+-.+++++.+.....+++.+-||++++.-+. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lip~~~~~~ii~~~~~~~~i~~~~~~~~~~~~~~~~~ 160 (390) T protein:vir:97 81 MFVASEQFQASTGRWNDRSARATMNIKAALNTASTDAAGSAGALTTPNRLPGFITPPDARLTVRDLIGSGRTDSALIEYV 160 (390) T ss_pred hhhhhHHHHHHHHHhhhhhhhhhhHHHHHHHhhhcccccccccccchhhhHHHHHHHhhhhhhHhhcceeeccCCceEEE Confidence 0 0000 00 0001111 111111122335555556667778888888887664321 Q ss_pred EeeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcc Q lcl|NC_015286. 106 AMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEAL 185 (457) Q Consensus 106 AMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaL 185 (457) -.. +..+. + .| .+|. T Consensus 161 ~~~----~~~~~-------a-------~~----------------------------------------------v~Eg- 175 (390) T protein:vir:97 161 QET----GFVNN-------A-------AI----------------------------------------------VAEG- 175 (390) T ss_pred EEe----cCCcc-------e-------ee----------------------------------------------ecCC- Confidence 111 00000 0 00 0010 Q ss_pred CCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeee Q lcl|NC_015286. 186 DDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGA 265 (457) Q Consensus 186 g~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk 265 (457) ..+++-..++++++...|.-+-...+|-||.+|-- +.++.|.+-|+..|...+|+.||.- . T Consensus 176 ------~~~~~~~~~~~~i~~~~~k~~~~~~is~ell~ds~-----~l~~~i~~~la~a~~~~~d~a~l~G--------~ 236 (390) T protein:vir:97 176 ------ALKPESSLKFAKKTDTTHVIAHTMKATRQILSDAP-----QLASYMNNRLIRGLKVKEDAEILRG--------T 236 (390) T ss_pred ------ccccccccceeEEEEeeeeEEEeehhhHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHhhc--------C Confidence 01222222234444444444446789999999852 4788999999999999999888752 1 Q ss_pred ccccccceeEeecc------ccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccc Q lcl|NC_015286. 266 QNNTATAGVFDLDV------DSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALN 339 (457) Q Consensus 266 ~~~v~~~Gv~Dl~~------~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~ 339 (457) -.+-...|++.... ...+--..+....++.++ .......+-+|+||.....|.. +. ..+ T Consensus 237 g~~~~p~Gi~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---------~~~~~~~~~~v~n~~~~~~L~~---lk---d~~ 301 (390) T protein:vir:97 237 GANDGLLGLIPQATTYAAPTTIAGATRVDQLRLAMLQA---------SLAEYPASGIVINPIDWAAIEL---AK---DAN 301 (390) T ss_pred CCCccccceeeccccccccccccccchHHHHHHHHHhh---------ccccCCCCEEEEcHHHHHHHHH---hh---cCC Confidence 11112334432210 001111112222222222 2334456678899999888774 22 111 Q ss_pred ccccccccccCCceEEEEecCceEEEEecccccccccceEEEE-EecCCCccceeEEccccccccccccCC---ccccce Q lcl|NC_015286. 340 GNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAG-YKGTSPYDAGLFYCPYVPLQQVRAINP---DTFQPK 415 (457) Q Consensus 340 ~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG-~KG~~~~d~glfyaPYv~~~~~~~~Dp---~s~qP~ 415 (457) |. ....++.. ...++|. +++|+++...|. .-+++| ++. ++++.....+.....-+. .+-+=. T Consensus 302 G~--~l~~~~~~-~~~~~l~-G~pV~~~~~~~~----~~~~~gd~~~------~~~~~~~~~~~i~~~~~~~~f~~~~~~ 367 (390) T protein:vir:97 302 NQ--YLIGNARG-TLTPTLW-GLPVVATQAMAP----GEFLVGAFDL------AAQIFDQWDARVEIGYVNDDFQRNMVT 367 (390) T ss_pred Cc--eeecCccC-CCCceec-ceeeEEcCCCCC----CcEEEEeccc------eEEEEEecceEEEEeecccccccCcEE Confidence 11 11111111 1134563 678888877663 223443 220 111111100000000011 122333 Q ss_pred eeeeeeeee-eeccccccccCcccccccccchheeeeeee Q lcl|NC_015286. 416 IGFKTRYGM-VSNPFAQGLTQGSGALTANTNRYYRRVQVA 454 (457) Q Consensus 416 ~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~n~~~~r~~~~ 454 (457) +-...||++ +.+|-+- -++.++ T Consensus 368 ~r~~~r~d~~v~~~~a~-----------------v~~~~a 390 (390) T protein:vir:97 368 VLAEERLALVVYRPEAL-----------------ITGSFA 390 (390) T ss_pred EEEEEeeccEEeccccE-----------------EEEEeC Confidence 445568877 4555422 111111 No 60 >protein:vir:4856 Length: 293 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049396;genbank:gi:9632424;genbank:GeneID:1258532 Probab=87.49 E-value=0.038 Score=28.35 Aligned_cols=273 Identities=11% Similarity=0.048 Sum_probs=120.3 Q ss_pred Hhhhhhhccccccccccccccccccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccc Q lcl|NC_015286. 48 VLNETLQTTGYTGASTATGPVAGFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAF 126 (457) Q Consensus 48 ~~~e~~~~~g~~~~st~tg~i~~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAl 126 (457) +|+.. ..++++..-.-.-+.+. .+++..-+..+..+++.+-||++.+|-+ .+....+.. T Consensus 1 ~l~~~-------~~~t~~~gg~liP~~~~~~Ii~~~~~~~~l~~~~~~~~~~~~~g~~-----~~~~~~~~~-------- 60 (293) T protein:vir:48 1 MLDSK-------TDHSGSDAGLTIPQDIRTAINTLVRQYDSLQEYVNVENVTTLTGSR-----VYEKWTDIT-------- 60 (293) T ss_pred Cceee-------cccccCcCceEechhHHHHHHHHHHhhhhhhhhceeeeccCCcceE-----EEEeecCCC-------- Confidence 33332 11221111111122222 3555556777788889998988876521 111000000 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccce-eEEEEEE Q lcl|NC_015286. 127 FNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMG-FSIEKVT 205 (457) Q Consensus 127 fnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMs-FsIeK~t 205 (457) + ... -.+| +..++|.+ .++++.+ T Consensus 61 ---------~--------------------------------~a~--------~v~E-------g~~~~~~~~~~~~~i~ 84 (293) T protein:vir:48 61 ---------G--------------------------------LAN--------IDDE-------AGKIADIDDPKLSLIK 84 (293) T ss_pred ---------c--------------------------------cee--------eecC-------CcccccccccceeEEE Confidence 0 000 0011 11233332 3456666 Q ss_pred EEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhH Q lcl|NC_015286. 206 VTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRW 285 (457) Q Consensus 206 VtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw 285 (457) ..+|.-+-...+|-||.+|.. +|.+++|.+-|+..|..-+|+.|+.-+-+.+.. .+.+++ T Consensus 85 l~~~k~~~~~~iS~ell~ds~----~~l~~~i~~~la~~~~~~~~~~i~~g~~~~~~~--------~~~~~~-------- 144 (293) T protein:vir:48 85 YTIKRYAGISTVTNSLLADSA----ENILAWLSGWIAKKVVVTRNKAILGVVDKLPTK--------PTLTKW-------- 144 (293) T ss_pred EeeeEEEEeehhhHHHHhhhh----HHHHHHHHHHHHHHHHHHHHhHHhhcccccccc--------ccccCH-------- Confidence 666666667789999999863 678999999999999999999998765332221 122221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEE Q lcl|NC_015286. 286 SVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVY 365 (457) Q Consensus 286 ~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy 365 (457) +....|+.++... -+. ....+|++.....|.. ++- .+|. ....++......++|.| ++|+ T Consensus 145 --d~i~~~~~~l~~~--------~~~-~a~~vmn~~~~~~L~~---lkd---~~g~--~l~~~~~~~~~~~~l~G-~Pv~ 204 (293) T protein:vir:48 145 --DDIIDLEAKVDPA--------IKQ-TSFFLTNTSGFTALKK---VKN---ALGD--YLMERDVKSPTGYSIAG-FAVK 204 (293) T ss_pred --HHHHHHHHhhhhh--------hcC-CCEEEEcHHHHHHHHH---hhc---cCCc--eEeecCcCCCCCceecc-eeeE Confidence 2233344444221 122 3356788888877765 211 1111 11111111122346644 4665 Q ss_pred E--ecccccccccc----------eEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eecccccc Q lcl|NC_015286. 366 V--DPYSANVADKH----------YYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQG 432 (457) Q Consensus 366 ~--D~y~~~~~~~d----------Y~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~ 432 (457) + |.+.|+....+ |+.++.++.... -..++.. -+-.+-|=.+-...||+. +.+|-+-. T Consensus 205 ~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~i----~~~~~~~------~~~~~~~~~~r~~~r~d~~~~~~~a~~ 274 (293) T protein:vir:48 205 EISDRWLPNASSGVMPLYFGDLKQAVTLFDRQQMSL----LSTNIGG------GAFETDTTKVRVIDRFDVVATDTEAFV 274 (293) T ss_pred EecccccCCccCCceEEEEEeccceEEEEEecceEE----EEecccc------hhhhcCeEEEEEEEeeCcEEecccceE Confidence 4 44444322222 222222222111 1111100 011233444555566666 55554221 Q ss_pred c-c----Ccccccccccch Q lcl|NC_015286. 433 L-T----QGSGALTANTNR 446 (457) Q Consensus 433 ~-~----~~~~~~~~~~n~ 446 (457) . + ..+..-...... T Consensus 275 ~l~~~~~~~~~~~~~~~~~ 293 (293) T protein:vir:48 275 PASFKAIADQKGNIGSTAV 293 (293) T ss_pred EEEeeccccCCccccccCC Confidence 0 0 000000000000 No 61 >protein:vir:81160 Length: 371 # NCBI annotation: major capsid protein # Family: family:all:21 # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285811;genbank:gi:148747732;genbank:GeneID:5247203 Probab=87.46 E-value=0.039 Score=28.33 Aligned_cols=315 Identities=14% Similarity=0.074 Sum_probs=129.7 Q ss_pred CchHHHHHHhhHhhccccccccccchhhh-hhhhhccc-------------hHHHHHHHHHHhhhhhh---ccccccccc Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRG-VVAQLLEN-------------QEKAITEEASVLNETLQ---TTGYTGAST 63 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~-v~~~~~~n-------------~~~~~~~~~~~~~e~~~---~~g~~~~st 63 (457) +..++=.|+|..+.. ||.+..++- ....+.+- +.+...++.+.+...+. .......++ T Consensus 22 ~~~~~~~e~~~~~~~-----ei~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~t~ 96 (371) T protein:vir:81 22 LLAENKIEEAKKLKE-----EIVALQEKFDVAKELYEEQKQTIEDKEPLKPTVQVKENEVEAFVNHIRTRFRNAMSEGSN 96 (371) T ss_pred HhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHhhccCCC Confidence 111222223433211 121111100 00000000 00000111111111000 001111122 Q ss_pred cccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccccc Q lcl|NC_015286. 64 ATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDP 143 (457) Q Consensus 64 ~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~ 143 (457) ++|.+.--....-.+++...+.....+++.+.||++.++-+.-.+. .+ ++ ++- + T Consensus 97 ~~gg~~vP~~~~~~ii~~~~~~s~i~~~~~~~~~~~~~~~~~~~~~--~~--~~------~a~-------~--------- 150 (371) T protein:vir:81 97 QDGGYTVPQDIQTRINELRESKDALQNLITVEPVTTLSGSRVFKKR--SQ--QT------GFV-------E--------- 150 (371) T ss_pred ccCceeecHhHHHHHHHHHHhhhhhhhhceeeeccCCceeEEEEee--cC--Cc------cee-------e--------- Confidence 2222211111122366666688889999999999988776543331 10 00 000 0 Q ss_pred ccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHH Q lcl|NC_015286. 144 GASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQ 223 (457) Q Consensus 144 ~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQ 223 (457) .++++...+ ..+..|.+..++..|..+ ...+|-||.+ T Consensus 151 -----------------------------------v~Eg~~~~~-~~~~~f~~i~~~~~k~~~-------~~~iS~ell~ 187 (371) T protein:vir:81 151 -----------------------------------VAEGAAIGE-KATPQFTLLQYQVKKYAG-------FFRVTNELLN 187 (371) T ss_pred -----------------------------------ecccccccc-ccccceeeEEeeeeEEEE-------eehhhHHHHh Confidence 000000000 112345666665555554 4479999999 Q ss_pred hHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHH Q lcl|NC_015286. 224 DLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANA 303 (457) Q Consensus 224 DLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~ 303 (457) |-. .|.++.|.+.|+..|..-+|+.|+.-.-+. ...|+.+.+ ..+.++... . T Consensus 188 ds~----~~l~~~i~~~l~~a~~~~~~~~i~~g~g~~---------~~~~~~~~~----------~i~~~~~~~-l---- 239 (371) T protein:vir:81 188 DST----EAIVNTLVRWIGDESRVTRNGLIINVLNTK---------AKTAIADLD----------GLKQIINVQ-L---- 239 (371) T ss_pred hhh----HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------cccccccHH----------HHHHHHHhh-c---- Confidence 853 467899999999999999999998854322 123332221 111221110 0 Q ss_pred HHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEE Q lcl|NC_015286. 304 IGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGY 383 (457) Q Consensus 304 i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~ 383 (457) ...-.....+|+++.....|.. +. ..+|.-- ...+. .....|+|. +++|++..++| .|. T Consensus 240 ---~~~~~~~a~~vmn~~~~~~L~~---lk---d~~g~~l-~~~~~-~~~~~~~l~-G~pV~~~~~~~---------~~~ 298 (371) T protein:vir:81 240 ---DPVFRSTSSVIVNQDAFNWLDT---LK---DQNGQYL-LQPSI-SSPTGRQLL-GLPVVIVSNKV---------LAN 298 (371) T ss_pred ---chhhhcCCEEEEcHHHHHHHHH---hh---ccCCCee-eeccc-CCCCCceec-ceeEEEecccc---------cCc Confidence 0111122367889988887765 21 1111100 00111 112346775 57777775543 222 Q ss_pred ec---CCCccceeEEcccccc----cccc---ccCCc------cccceeeeeeeeee-eecccccc-ccCccc Q lcl|NC_015286. 384 KG---TSPYDAGLFYCPYVPL----QQVR---AINPD------TFQPKIGFKTRYGM-VSNPFAQG-LTQGSG 438 (457) Q Consensus 384 KG---~~~~d~glfyaPYv~~----~~~~---~~Dp~------s~qP~~g~~tRY~l-~~nP~~~~-~~~~~~ 438 (457) .+ ...-...++|+.+... +.-+ .+++. .-|=.+-...|++. +.||-+-. ++...+ T Consensus 299 ~~~~~~~~~~~~i~~Gd~~~~~~~~~~~~~~i~~~~~~~~~f~~~~v~~~~~~r~d~~~~~~~a~~~~~~~~A 371 (371) T protein:vir:81 299 RVDGGTGAQFAPIIVGDLKEAVVMFDRQRTEIMSSNVAMDAFETDATLWRAIERMDVKMRDDEAFVFGEVQLA 371 (371) T ss_pred cccccccCCcceEEEEehhceEEEEeecceEEEEeccccchhhcCceEEEEEEeeccEEecccceEEEEEecC Confidence 21 1111222444433211 0000 11222 23445566677777 66665321 122222 No 62 >protein:vir:8102 Length: 543 # NCBI annotation: gp6 # Family: family:all:21 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817683;genbank:gi:29566114;genbank:GeneID:1259308 Probab=87.45 E-value=0.039 Score=28.33 Aligned_cols=322 Identities=13% Similarity=0.006 Sum_probs=116.9 Q ss_pred Cch------HHHHHHhhHhhc-----------------cccccccccchhhhhhhhhccchHHHHHHH-HHHhhhhhhcc Q lcl|NC_015286. 1 MSL------QQLQEKWAPVLN-----------------HESLPEIEDTHKRGVVAQLLENQEKAITEE-ASVLNETLQTT 56 (457) Q Consensus 1 ~~~------~~l~~~w~~~l~-----------------~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~-~~~~~e~~~~~ 56 (457) |.. +.|..++.-+-. ......-....++.....+.+.+...+... .+.+.+. T Consensus 173 ~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~e~~~~~~~---- 248 (543) T protein:vir:81 173 LRARALSAIEKMQGASDNVRAAATKIIERFDDEDSTLARQCLATSSPAYLRAWSKMARNPHAAILTEEEKRAINEV---- 248 (543) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhHHHHhhhhhhhhhhhh---- Confidence 110 111111111000 000000000011111111111111111110 1111111 Q ss_pred ccccccccccccccccceehhhhHHHh-hhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccc Q lcl|NC_015286. 57 GYTGASTATGPVAGFDPVLISLIRRSM-PQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFS 135 (457) Q Consensus 57 g~~~~st~tg~i~~~~P~Lv~l~RRa~-~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fS 135 (457) -..+..+++|.+.--....-.++.+.. +..+...++-|.|++|..- +- +.. .++ . T Consensus 249 ~~~~~t~~~gg~lip~~~~~~ii~~~~~~~~~l~~~~~~~~~~g~~~--~~---~~~--~~~-------------~---- 304 (543) T protein:vir:81 249 RAMGLTKADGGYLVPFQLDPTVIITSNGSLNDIRRFARQVVATGDVW--HG---VSS--AAV-------------Q---- 304 (543) T ss_pred hhcccccccCcccCchhhhhHHHHHHHhhhchhhhhcccccCCcceE--EE---Eec--CCc-------------c---- Confidence 001111122221111111112222222 1123445555555544321 00 000 000 0 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccc Q lcl|NC_015286. 136 GGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKA 215 (457) Q Consensus 136 G~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKA 215 (457) .. . .+|. ..+++-..+++.++++++.-+=.. T Consensus 305 ----------------------------------a~------~--v~Eg-------~~~~~~~~~~~~i~~~~~k~~~~~ 335 (543) T protein:vir:81 305 ----------------------------------WS------W--DAEF-------EEVSDDSPEFGQPEIPVKKAQGFV 335 (543) T ss_pred ----------------------------------ee------e--cccC-------ccccccccccceeeeeeeeeEeee Confidence 00 0 0110 012222233456666666666677 Q ss_pred eeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEe--------eccccchhHHH Q lcl|NC_015286. 216 EYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFD--------LDVDSNGRWSV 287 (457) Q Consensus 216 EYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~D--------l~~~~~grw~~ 287 (457) .+|-||.+|- + |.++.|.+-|...|...+|+-||.- .-+-+ ...|++. ......+-... T Consensus 336 ~is~ell~d~-~----~~~~~i~~~l~~~~~~~~d~ail~G---~Gt~~-----~p~Gi~~~~~~~~~~~~~~~~~~~~~ 402 (543) T protein:vir:81 336 PISIEALQDE-A----NVTETVALLFAEGKDELEAVTLTTG---TGQGN-----QPTGIVTALAGTAAEIAPVTAETFAL 402 (543) T ss_pred hhhHHHHhcc-H----HHHHHHHHHHHHHHHHHHHHHHhcc---CCCCc-----ccccchhhcccccccccccccccccH Confidence 8999999873 2 7899999999999999999998852 00000 1122211 11111111122 Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEe Q lcl|NC_015286. 288 EKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVD 367 (457) Q Consensus 288 e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D 367 (457) +-...+...+.-. -.....+|+++.+...|.. +.- .+|. ....+.. ...-++|. +++|++. T Consensus 403 ~~~~~~~~~l~~~---------~~~~~~~v~n~~~~~~l~~---lkd---~~G~--~l~~~~~-~g~~~~l~-G~pv~~~ 463 (543) T protein:vir:81 403 ADVYAVYEQLAAR---------HRRQGAWLANNLIYNKIRQ---FDT---QGGA--GLWTTIG-NGEPSQLL-GRPVGEA 463 (543) T ss_pred HHHHHHHHhhhcc---------ccCCcEEEEcHHHHHHHHH---hhc---CCCc--eeccCcC-CCCCcccc-ceeeEEe Confidence 3233343333211 1122246789988877765 211 1111 1111111 11134664 4788888 Q ss_pred ccccccc--------------ccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccc- Q lcl|NC_015286. 368 PYSANVA--------------DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQ- 431 (457) Q Consensus 368 ~y~~~~~--------------~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~- 431 (457) .+.|.+. ++.++++|..++.++ =..||+- ..+|-...+=.+=+..|+|. +.||-+- T Consensus 464 ~~~~~~~~~~~~~~~~~i~~gd~~~~~i~~~~~~~i----~~~~~~~----~~~~~~~~~~~~~~~~r~d~~v~~~~A~~ 535 (543) T protein:vir:81 464 EAMDANWNTSASADNFVLLYGNFQNYVIADRIGMTV----EFIPHLF----GTNRRPNGSRGWFAYYRMGADVVNPNAFR 535 (543) T ss_pred ccccccccccccCCcceEEEeeccceeEEeecccEE----EEecccc----ccchhhcCceEEEEEEeeccEeecccceE Confidence 7765321 112222232222211 1222211 11233333445555667887 6676543 Q ss_pred cccCcccc Q lcl|NC_015286. 432 GLTQGSGA 439 (457) Q Consensus 432 ~~~~~~~~ 439 (457) .++...++ T Consensus 536 ~l~~~~~a 543 (543) T protein:vir:81 536 LLNVETAS 543 (543) T ss_pred EEEecccC Confidence 22222222 No 63 >protein:vir:103955 Length: 324 # NCBI annotation: head protein # Family: family:all:507 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873992;genbank:gi:118430767;genbank:GeneID:4525449 Probab=87.20 E-value=0.04 Score=28.23 Aligned_cols=292 Identities=12% Similarity=0.079 Sum_probs=127.6 Q ss_pred ccchHHHHHHHHHHhhhhhhcccccccccccccccc-ccce-e-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeee Q lcl|NC_015286. 35 LENQEKAITEEASVLNETLQTTGYTGASTATGPVAG-FDPV-L-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNY 111 (457) Q Consensus 35 ~~n~~~~~~~~~~~~~e~~~~~g~~~~st~tg~i~~-~~P~-L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY 111 (457) ||.-++-=.+.+++-+.....+=..+..+.+.+-++ .=|. + -.+++.+....+..+++-+.||++.+.-|. +. T Consensus 1 ~~~~~~~~~~~~~f~~~~~~~~~~~a~~~~~~~~~~~liP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~p----~~ 76 (324) T protein:vir:10 1 MEQTQKLKLNLQHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMQLGKYEPMEGTEKKFT----FW 76 (324) T ss_pred CCCchHHHHHHHHHHHHhhccceecccceeccCCCcceechhHHHHHHHHHHhhchhhhhcceeeccCCceEEE----EE Confidence 332211111222222111111111122221111111 1121 2 224555666777888999999987653322 11 Q ss_pred cccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCC Q lcl|NC_015286. 112 GAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSN 191 (457) Q Consensus 112 ~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~ 191 (457) .. ++ ++ .+ .+| + T Consensus 77 ~~--~~------~a-------~~----------------------------------------------v~E-------g 88 (324) T protein:vir:10 77 AD--KP------GA-------YW----------------------------------------------VGE-------G 88 (324) T ss_pred eC--Cc------ce-------eE----------------------------------------------ecc-------C Confidence 10 00 00 00 011 1 Q ss_pred cccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccccc Q lcl|NC_015286. 192 TAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTAT 271 (457) Q Consensus 192 ~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~ 271 (457) ..+++...+++++++..|.-+-.-..|-||.+|-. .|.+++|.+.|+..|...+++.+|.---+. ... T Consensus 89 ~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~----~~l~~~i~~~l~~ai~~~~d~a~l~G~g~~--------~~~ 156 (324) T protein:vir:10 89 QKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY----SQFFEEMKPMIAEAFYKKFDEAGILNQGNN--------PFG 156 (324) T ss_pred ccccccccceeEEEEeeEEEEEeehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--------ccC Confidence 12344445557777777777777889999999864 468999999999999999999998642111 111 Q ss_pred ceeEeecccc----chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccccccc Q lcl|NC_015286. 272 AGVFDLDVDS----NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGV 347 (457) Q Consensus 272 ~Gv~Dl~~~~----~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~ 347 (457) .|++...... .+--..+....++..+. ...+..+.+|+|+.....|.. +.- .+|.. ... T Consensus 157 ~~i~~~~~~~~~~~~~~~t~~~i~~~~~~l~---------~~~~~~~~~v~n~~~~~~L~~---l~d---~~g~~--~~~ 219 (324) T protein:vir:10 157 KSIAQSIEKTNKVIKGDFTQDNIIDLEALLE---------DDELEANAFISKTQNRSLLRK---IVD---PETKE--RIY 219 (324) T ss_pred ccccccccccceeccccCCHHHHHHHHHhhh---------hccCCCCEEEEcHHHHHHHHH---hhc---cCCce--eec Confidence 2222111000 01111233333433332 123455568899999988775 211 11111 111 Q ss_pred ccCCceEEEEecCceEEEEecccccccccceEEEE--------EecCCCccceeEEccccccccccccCCc--------c Q lcl|NC_015286. 348 DDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAG--------YKGTSPYDAGLFYCPYVPLQQVRAINPD--------T 411 (457) Q Consensus 348 d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG--------~KG~~~~d~glfyaPYv~~~~~~~~Dp~--------s 411 (457) +... ++|. +++|++.+..+ .+..-+++| ..++.+.+ .....-+ ....|+. + T Consensus 220 ~~~~----~~l~-G~PV~~~~~~~--~~~~~~~~gd~~~~~~~~~~~~~i~----~~~~~~~--~~~~~~~~~~~~~~~~ 286 (324) T protein:vir:10 220 DRNS----DTLD-GLPVVNLKSSN--LKRGELITGDFDKLIYGIPQLIEYK----IDETAQL--STVKNEDGTPVNLFEQ 286 (324) T ss_pred CCCC----cccc-ceeEEeecCCC--CCcceEEEEecccEEEEEecCcEEE----Eeecccc--cccccccccchhhhhc Confidence 1222 3453 35788776533 222223333 22211110 0000000 0001111 1 Q ss_pred ccceeeeeeeeee-eeccccc--------cccCccccc Q lcl|NC_015286. 412 FQPKIGFKTRYGM-VSNPFAQ--------GLTQGSGAL 440 (457) Q Consensus 412 ~qP~~g~~tRY~l-~~nP~~~--------~~~~~~~~~ 440 (457) -+=.+=...|||. +.||-+- +.+..++.+ T Consensus 287 ~~~~~r~~~r~d~~v~~~~A~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:10 287 DMVALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV 324 (324) T ss_pred CcEEEEEEEEEccEEecccceEEEEeccCCCCCCCCCC Confidence 1233334467776 5666532 122234444 No 64 >protein:vir:4226 Length: 326 # NCBI annotation: observed 35.2Kd protein # Family: family:all:507 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039681;swissprot:sw:q05223;genbank:gi:9625447;uniprot:Q05223;genbank:GeneID:2942929 Probab=86.64 E-value=0.044 Score=28.01 Aligned_cols=296 Identities=12% Similarity=0.021 Sum_probs=127.1 Q ss_pred hccchHHHHH----HHHHHhhhhhhccccccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeee Q lcl|NC_015286. 34 LLENQEKAIT----EEASVLNETLQTTGYTGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRT 109 (457) Q Consensus 34 ~~~n~~~~~~----~~~~~~~e~~~~~g~~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRs 109 (457) |.=|.+|... ++.+.+.+. ++++.-.--.+.+-.+++.+.+..+...++-+.||++++.-+. T Consensus 1 ~~~~~~r~~~~~~~~e~~a~~~~----------~~~~g~~ip~~~~~~ii~~~~~~s~i~~~~~~~~~~~~~~~~p---- 66 (326) T protein:vir:42 1 MAVNPDRTTPFLGVNDPKVAQTG----------DSMFEGYLEPEQAQDYFAEAEKISIVQQFAQKIPMGTTGQKIP---- 66 (326) T ss_pred CCCCccchhhhcCcchhhheecc----------ccCCcceechhhHHHHHHHHHhcchhhhhcceeeccCCceEEE---- Confidence 3334333221 122212111 1111111122333345666666777788899999987653221 Q ss_pred eecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCC Q lcl|NC_015286. 110 NYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSS 189 (457) Q Consensus 110 rY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s 189 (457) +.. .++ ++ .| .+| T Consensus 67 ~~~--~~~------~a-------~~----------------------------------------------v~E------ 79 (326) T protein:vir:42 67 HWT--GDV------SA-------SW----------------------------------------------IGE------ 79 (326) T ss_pred EEe--CCc------ce-------EE----------------------------------------------ecC------ Confidence 110 000 00 00 011 Q ss_pred CCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc Q lcl|NC_015286. 190 SNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT 269 (457) Q Consensus 190 ~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v 269 (457) +..++|-..++++.++.+|..+-.-.+|-||.+|-. .|.++.|.+-|+..|+..+++.+|.-=-+-...|-.+.. T Consensus 80 -g~~~~~~~~~f~~i~~~~~k~~~~v~iS~ell~~s~----~~~~~~i~~~l~~a~~~~~d~a~l~G~gs~~p~gi~~~~ 154 (326) T protein:vir:42 80 -GDMKPITKGNMTSQTIAPHKIATIFVASAETVRANP----ANYLGTMRTKVATAFAMAFDNAAINGTDSPFPTFLAQTT 154 (326) T ss_pred -CccccccccceeEEEEeeEEEEEeehhhHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccc Confidence 113444445557777777777777889999999843 578999999999999999999998531000000000000 Q ss_pred ccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhC----Ccceeccccccccccc Q lcl|NC_015286. 270 ATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMA----GVLDYSPALNGNNALT 345 (457) Q Consensus 270 ~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~s----g~l~~~~~~~~~~~~~ 345 (457) ...+....... +-+.-...... .+..+. .........++.+|+++.....|..- |-.-+.+.... T Consensus 155 ~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~--~~~~~~~~~~a~~v~n~~~~~~L~~lkd~~G~~l~~~~~~~----- 223 (326) T protein:vir:42 155 KEVSLVDPDGT--GSNADLTVYDA--VAVNAL--SLLVNAGKKWTHTLLDDITEPILNGAKDKSGRPLFIESTYT----- 223 (326) T ss_pred cccceeecccc--cccccchhHHH--HHHHHH--hhhhhhccCccEEEEeHHHHHHHHHhhccCCceeecccccc----- Confidence 00001000000 00000000000 001111 11123345567788999999888751 11111111100 Q ss_pred ccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEcccccccccccc---------CCcc----- Q lcl|NC_015286. 346 GVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAI---------NPDT----- 411 (457) Q Consensus 346 ~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~---------Dp~s----- 411 (457) ........|+| .+++|+++.+.|... . +++-|+-. -+||...-.. .+... |+.. T Consensus 224 --~~~~~~~~~~l-~G~pv~~~~~~~~~~--~---~~~~Gd~s---~~~~~~~~~~-~v~~~~e~~~~~~~~~~~~~~~~ 291 (326) T protein:vir:42 224 --EENSPFRLGRI-VARPTILSDHVASGT--V---VGYQGDFR---QLVWGQVGGL-SFDVTDQATLNLGTPQAPNFVSL 291 (326) T ss_pred --CccccccCcee-eeeeEEEcCCCCCCc--e---EEEEeecc---eEEEEEecce-EEEEeecceeeecccccccchhh Confidence 01111223444 358999998876421 1 12222211 1122222111 11110 1111 Q ss_pred cc---ceeeeeeeeee-eeccccc-ccc---Cccc Q lcl|NC_015286. 412 FQ---PKIGFKTRYGM-VSNPFAQ-GLT---QGSG 438 (457) Q Consensus 412 ~q---P~~g~~tRY~l-~~nP~~~-~~~---~~~~ 438 (457) || =.+=...|++. +.+|-+- .++ -.++ T Consensus 292 ~~~d~~~~r~~~~~d~~v~~~~a~~~l~~~~~~~~ 326 (326) T protein:vir:42 292 WQHNLVAVRVEAEYAFHCNDKDAFVKLTNVDATEA 326 (326) T ss_pred hhcCcEEEEEEEEeccEEecccceEEEeeccccCC Confidence 22 33345667777 6666532 111 1112 No 65 >protein:vir:78223 Length: 333 # NCBI annotation: Putative major head protein # Family: family:all:966 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491666;genbank:gi:157786490;genbank:GeneID:5625701 Probab=86.52 E-value=0.045 Score=27.97 Aligned_cols=305 Identities=14% Similarity=0.064 Sum_probs=121.7 Q ss_pred HHHHHHHHHHhhhhhhcccccccc--cccccccccccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccC Q lcl|NC_015286. 39 EKAITEEASVLNETLQTTGYTGAS--TATGPVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAER 115 (457) Q Consensus 39 ~~~~~~~~~~~~e~~~~~g~~~~s--t~tg~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~ 115 (457) -..|+|-+. .+.|.+.+. ++.++. ..-+.+ -.+++.+.+..+..+++-+.||++..--|.-.. . T Consensus 1 ~a~l~el~~------~~~~~~~~g~~~~~~~~-liP~~~~~~ii~~l~~~s~l~~~~~~~~~~~~~~~~p~~~----~-- 67 (333) T protein:vir:78 1 MATLNELLP------NSAGSNHQGRLAHVPSD-LLPKEIVGPIFDKAQESSLVLRMGEQIPISYGETIIPTTV----K-- 67 (333) T ss_pred CchhHHhhh------hcccccccCceecCCcc-ccchhHHHHHHHHHHhhchhhhhcceeeccCCceEEEEEe----C-- Confidence 122222221 111111111 111111 111111 225666667788899999999986433222211 0 Q ss_pred CcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccc Q lcl|NC_015286. 116 DPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFR 195 (457) Q Consensus 116 g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~ 195 (457) ++ .| .|-+ .|-....+|.---......|. T Consensus 68 ~~------~a-------~~v~--------------------------------------eg~~~~~~e~~~~~~~~~~f~ 96 (333) T protein:vir:78 68 RP------EV-------GQVG--------------------------------------VGTSNEQREGGLKPLSGTAWD 96 (333) T ss_pred Cc------ee-------Eeec--------------------------------------Cccccccccccccccccccee Confidence 00 00 0000 000011111100011223455 Q ss_pred cceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeE Q lcl|NC_015286. 196 EMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVF 275 (457) Q Consensus 196 EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~ 275 (457) +..++..|..+ -...|-||.+|-. .|.+++|.+.|+..|...|+..+|.---. .......|+. T Consensus 97 ~i~l~~~kl~~-------~~~is~ell~~s~----~~~~~~i~~~la~ai~~~~d~~~l~G~g~------~~~~~~~g~~ 159 (333) T protein:vir:78 97 TRSVSPIKLAT-------IVTVSEEFARMNP----SGLYTKLQGDLAYAIGRGIDLAVFHGKSP------LTGSALQGID 159 (333) T ss_pred EEEEeeEEEEE-------eehhhHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHhcccCC------CCCccccccc Confidence 55555555554 3457778887754 47899999999999999999999853111 0111111111 Q ss_pred e------ecc-ccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccc Q lcl|NC_015286. 276 D------LDV-DSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVD 348 (457) Q Consensus 276 D------l~~-~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d 348 (457) . ... ...+... ...|.-...+-.....-....++.+|++|.-...|.....+. ..+|. ..... T Consensus 160 ~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~vmn~~~~~~L~~~~~~~---d~~G~--~i~~~ 229 (333) T protein:vir:78 160 TDNVIANTTNVDYLQETG-----DPLLDRLLDGYDLVSANTDVEFNGWAVDPRFRAHLLRAQAYR---DANGN--VDPSR 229 (333) T ss_pred cccccccccccccccccc-----chhHHHHHHHHHhhccccccCceEEEEcchHHHHHHHHhhhc---CCCCc--eeecC Confidence 1 100 0000000 011111122222222234666778888988776664422111 01111 00000 Q ss_pred cCCceEEEEecCceEEEEeccccccc-------------ccceEEEEEecCCCccceeEEccccccccccccCCcccc-- Q lcl|NC_015286. 349 DTSSTLVGTLNGRIKVYVDPYSANVA-------------DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQ-- 413 (457) Q Consensus 349 ~~~~~~~G~l~~~~~vy~D~y~~~~~-------------~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~q-- 413 (457) .....-.|+|. +++|+++.+.|.+. ++..+++|..++.+.+ ..+|.-....+..--.-|| T Consensus 230 ~~~~~~~~~l~-G~Pv~~~~~i~~~~~~~~~~~~~~~~gD~~~~~~g~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~ 304 (333) T protein:vir:78 230 INLAAQTGDVL-GLPAQFGRAVGGDLGAAVDSKTRIIGGDFSQLKFGFADEIRIK----MSDTATLTDSGSATVSMWQTN 304 (333) T ss_pred ccccCCCceee-ceeeEEccccCCCccccCCCccEEEEEecccEEEEEeeccEEE----EeccccccccccceeehhhcC Confidence 11111236675 46898887765321 1122334444333322 2233211111110001111 Q ss_pred -ceeeeeeeeee-eeccccc-cccCcccc Q lcl|NC_015286. 414 -PKIGFKTRYGM-VSNPFAQ-GLTQGSGA 439 (457) Q Consensus 414 -P~~g~~tRY~l-~~nP~~~-~~~~~~~~ 439 (457) =.+=...|++. +.+|-+- .++...+- T Consensus 305 ~v~~r~~~r~d~~v~~~~a~~~l~~~~a~ 333 (333) T protein:vir:78 305 QIAILIEVTFGWLLGDKQAFVKFVDDEQP 333 (333) T ss_pred cEEEEEEEEEccEEecccceEEEeccCCC Confidence 11223457775 5666322 11111111 No 66 >protein:vir:4953 Length: 397 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049929;genbank:gi:9632900;genbank:GeneID:1262076 Probab=86.51 E-value=0.045 Score=27.96 Aligned_cols=318 Identities=12% Similarity=0.069 Sum_probs=130.7 Q ss_pred CchHHHHHHhhHhhccccc----------------cccccchhhhhhhhhccchHHHHHHHHHHhhhhhhccc------c Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESL----------------PEIEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTG------Y 58 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~----------------~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g------~ 58 (457) ++.|++.+...-+-..+.. .......++.+.. +..+...+.++.+.+.+.... . T Consensus 34 ~~~ee~~~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (397) T protein:vir:49 34 VSAEELQAIKNERDTAKMKRDMFKEQYTEARANEVANMSEEEKKPLTK----SEEEVKAGFVKDFKNLVRGRYQNLLDSK 109 (397) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc----chhHHHHHHHHHHHHHHhcchhHHHHHh Confidence 3444444333332111100 0000000000000 000011111222221111000 1 Q ss_pred ccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccccccc Q lcl|NC_015286. 59 TGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGP 138 (457) Q Consensus 59 ~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~ 138 (457) ...+++.|.+.--....-.+++...+..+..+++.++||++++|-+.=++ ..+..+. ..+ T Consensus 110 ~~~t~~~gg~~vP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------------a~~---- 169 (397) T protein:vir:49 110 TDASGSDAGLTIPQDIQTAIHTLVSQYDSLQEYVNVENVTTLTGSRVYEK--WTDITGL--------------ANI---- 169 (397) T ss_pred hccccccCcccccHhHHHHHHHHHHhhhhHHhhhceeecccCccceEEEe--eccCCcc--------------eee---- Confidence 11111222221111112234455556778889999999999988543222 1110000 000 Q ss_pred cccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceee Q lcl|NC_015286. 139 GAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYS 218 (457) Q Consensus 139 ~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT 218 (457) .++++...+ .....|.++.|++.|.. -...+| T Consensus 170 ----------------------------------------v~E~~~~~~-~~~~~~~~i~~~~~k~~-------~~~~iS 201 (397) T protein:vir:49 170 ----------------------------------------DDEAGKIAD-VDDPKLSLIKYTIKRYA-------GISTVT 201 (397) T ss_pred ----------------------------------------ecCcccccc-ccccceeeEEeeeeeEE-------eeehhH Confidence 000010000 11234555555555544 445689 Q ss_pred HHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHH Q lcl|NC_015286. 219 IELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIE 298 (457) Q Consensus 219 ~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~ 298 (457) -||.+|-. .|.+++|.+-|+..|..-+|+.||.-.-+.. ...|+.++ +....+.+.+. T Consensus 202 ~ell~ds~----~~l~~~i~~~l~~~~~~~~d~ai~~G~g~~~--------~~~~~~~~----------d~i~~~~~~l~ 259 (397) T protein:vir:49 202 NSLLADSA----ENILAWLSGWIAKKVVVTRNKAILEAIAALP--------TKPTLTKW----------DDIIDLEAKVD 259 (397) T ss_pred HHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhccccc--------cccccccH----------HHHHHHHHhhh Confidence 99999853 5789999999999999999999987542221 22333322 22334555553 Q ss_pred HHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEE--eccccccccc Q lcl|NC_015286. 299 RDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYV--DPYSANVADK 376 (457) Q Consensus 299 ~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~--D~y~~~~~~~ 376 (457) .. -.....+|+++.....|.. |. ..+|.- ....+. .....++|. +++|++ |.+.|+.... T Consensus 260 ~~---------~~~~a~~vmn~~~~~~l~~---lk---d~~G~~-l~~~~~-~~~~~~~l~-G~PV~~~~~~~~~~~~~~ 321 (397) T protein:vir:49 260 PA---------IKQTSFFLTNTSGFTALKK---VK---NALGDY-LMERDV-KSPTGYSID-GFAVKEVADRWLANGTGG 321 (397) T ss_pred hh---------hcCCCEEEEcHHHHHHHHH---hh---cCCCce-eeccCc-CCCCCceec-ceeeEEecccccccccCC Confidence 32 1234567889999888865 21 111110 011111 112235664 456664 4444432221 Q ss_pred ----------ceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eecccccc-------cc---- Q lcl|NC_015286. 377 ----------HYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQG-------LT---- 434 (457) Q Consensus 377 ----------dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~-------~~---- 434 (457) +|++++.++..+. =+.||.. -+-...+-.+-...|++. +.||-+-. .+ T Consensus 322 ~~~i~~gd~~~~~~~~~~~~~~i----~~~~~~~------~~~~~~~~~~r~~~r~d~~~~~~~a~~~~~~~~~~~~~~~ 391 (397) T protein:vir:49 322 AMPLYFGDLKQAVTLFDRQHMSL----LSTNIGG------GAFETDTTKVRVIDRFDVVATDTEAFVPASFKAIADQKGN 391 (397) T ss_pred ceeEEEeeccceEEEEeecceEE----EEecccc------chhhcCceeEEEEeeeCcEEecccceEEEEeecccCCCCC Confidence 2333333333222 2233321 112233344445556655 45553110 00 Q ss_pred Cccccc Q lcl|NC_015286. 435 QGSGAL 440 (457) Q Consensus 435 ~~~~~~ 440 (457) .+.-++ T Consensus 392 ~~~~~~ 397 (397) T protein:vir:49 392 LGSTAV 397 (397) T ss_pred cccccC Confidence 001111 No 67 >protein:vir:94142 Length: 304 # NCBI annotation: ORF013 # Family: family:all:507 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240234;genbank:gi:66395898;genbank:GeneID:5133311 Probab=86.50 E-value=0.045 Score=27.96 Aligned_cols=276 Identities=12% Similarity=0.067 Sum_probs=126.0 Q ss_pred hhcccccccccccccccc--cccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc Q lcl|NC_015286. 53 LQTTGYTGASTATGPVAG--FDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE 129 (457) Q Consensus 53 ~~~~g~~~~st~tg~i~~--~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE 129 (457) ..-+.+.+.++++.+..+ .-+.+ -.+++++.++.+..+++-+-||++..--|. ++.+ ++ ++ T Consensus 1 ma~~~~~~~~~~~t~~gg~lip~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~ip----~~~~--~~------~a---- 64 (304) T protein:vir:94 1 MATPTYTPGNVILSDFKNGVIPAEQGTLIMKDIMANSAIMKLAKNEPMTAQKKKFT----YLAK--GV------GA---- 64 (304) T ss_pred CcccccccccccccCCCceecchhHHHHHHHHHHhccchhhhcceeeccCCceEEE----EEeC--Cc------ce---- Confidence 112222233332222211 22222 246666777778888898989887542221 1110 00 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEee Q lcl|NC_015286. 130 PNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTAR 209 (457) Q Consensus 130 a~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAK 209 (457) .+ .+| +..+++-.-+++++++..| T Consensus 65 ---~~----------------------------------------------v~E-------~~~~~~~~~~~~~i~~~~~ 88 (304) T protein:vir:94 65 ---YW----------------------------------------------VSE-------TERIQTSKPEYAQAEMEAK 88 (304) T ss_pred ---EE----------------------------------------------eec-------CcccccccceeeEEEEEEE Confidence 00 011 0123333344566666666 Q ss_pred cccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec-----cccchh Q lcl|NC_015286. 210 ARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD-----VDSNGR 284 (457) Q Consensus 210 SRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~-----~~~~gr 284 (457) ..+-...+|-||.+|- .+|.++.|.+-|...|...||+.+|.---+ ++..++...+++.-. ...++. T Consensus 89 k~~~~~~iS~ell~ds----~~~l~~~i~~~l~~~ia~~~d~~~l~G~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304) T protein:vir:94 89 KIGVIIPLSKEFLKWT----AKDFFNEVKPLIAEAFYKAFDQAVIFGTKS----PYNTSTSGKPLVEGAEEKGNVVTDTN 160 (304) T ss_pred EEEEeehhhHHHHhcc----hHHHHHHHHHHHHHHHHHHHHhhheeccCC----Cccccccccccccccccccccccccc Confidence 6667788999999875 367889999999999999999998863111 011111111111110 001111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEE Q lcl|NC_015286. 285 WSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKV 364 (457) Q Consensus 285 w~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~v 364 (457) ...+....++.++. .......-+||++.....|.. +.- .+|. .. ..+. .|+|. +++| T Consensus 161 ~~~~~i~~~~~~l~---------~~~~~~~~~v~~~~~~~~L~~---lkd---~~G~--~l-~~~~----~~~l~-G~PV 217 (304) T protein:vir:94 161 NLYVDLSALMATIE---------DEELDPNGVLTTRSFRSKMRN---ALD---ANDR--PL-FDAN----GNEIM-GLPL 217 (304) T ss_pred chHHHHHHHHHHhh---------hccCCcCEEEEcHHHHHHHHH---hhc---cCCc--Ee-ecCC----Ccccc-ceee Confidence 11222222322221 122334457899999988875 211 1111 10 0111 25664 5799 Q ss_pred EEecccccccc--------cceEEEEEecCCCccceeEEcccccc--ccccccCCcc-----cc---ceeeeeeeeee-e Q lcl|NC_015286. 365 YVDPYSANVAD--------KHYYVAGYKGTSPYDAGLFYCPYVPL--QQVRAINPDT-----FQ---PKIGFKTRYGM-V 425 (457) Q Consensus 365 y~D~y~~~~~~--------~dY~~vG~KG~~~~d~glfyaPYv~~--~~~~~~Dp~s-----~q---P~~g~~tRY~l-~ 425 (457) |++.+.|...+ +.++++|..++.+.+- ..+. ......|++. || =.+=...||++ + T Consensus 218 ~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~i~~------~~e~~~~~~~~~~~~g~~~~~f~~~~~~~r~~~r~~~~v 291 (304) T protein:vir:94 218 SYTGADVYDKKKSLALMGDWDYARYGILQGIEYAI------SEDATLTTLQASDASGQPVSLFERDMFALRATMHIAYMN 291 (304) T ss_pred EEecccccCCCCcEEEEEehhhEEEEEecceEEEE------eecceeeeecccccCccchhhhhcCcEEEEEEEEeccEe Confidence 98887764332 2223344433322110 0000 0011112221 22 33334568887 6 Q ss_pred ecccccc-ccCcc Q lcl|NC_015286. 426 SNPFAQG-LTQGS 437 (457) Q Consensus 426 ~nP~~~~-~~~~~ 437 (457) .||-+-. ++..+ T Consensus 292 ~~~~a~~~l~~a~ 304 (304) T protein:vir:94 292 VKPEAFATLKPTE 304 (304) T ss_pred ecccceEEEEecC Confidence 6665331 12111 No 68 >protein:vir:105905 Length: 304 # NCBI annotation: major capsid protein # Family: family:all:507 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004375;genbank:gi:122891830;genbank:GeneID:4712376 Probab=86.50 E-value=0.045 Score=27.96 Aligned_cols=276 Identities=12% Similarity=0.067 Sum_probs=126.0 Q ss_pred hhcccccccccccccccc--cccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc Q lcl|NC_015286. 53 LQTTGYTGASTATGPVAG--FDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE 129 (457) Q Consensus 53 ~~~~g~~~~st~tg~i~~--~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE 129 (457) ..-+.+.+.++++.+..+ .-+.+ -.+++++.++.+..+++-+-||++..--|. ++.+ ++ ++ T Consensus 1 ma~~~~~~~~~~~t~~gg~lip~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~ip----~~~~--~~------~a---- 64 (304) T protein:vir:10 1 MATPTYTPGNVILSDFKNGVIPAEQGTLIMKDIMANSAIMKLAKNEPMTAQKKKFT----YLAK--GV------GA---- 64 (304) T ss_pred CcccccccccccccCCCceecchhHHHHHHHHHHhccchhhhcceeeccCCceEEE----EEeC--Cc------ce---- Confidence 112222233332222211 22222 246666777778888898989887542221 1110 00 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEee Q lcl|NC_015286. 130 PNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTAR 209 (457) Q Consensus 130 a~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAK 209 (457) .+ .+| +..+++-.-+++++++..| T Consensus 65 ---~~----------------------------------------------v~E-------~~~~~~~~~~~~~i~~~~~ 88 (304) T protein:vir:10 65 ---YW----------------------------------------------VSE-------TERIQTSKPEYAQAEMEAK 88 (304) T ss_pred ---EE----------------------------------------------eec-------CcccccccceeeEEEEEEE Confidence 00 011 0123333344566666666 Q ss_pred cccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec-----cccchh Q lcl|NC_015286. 210 ARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD-----VDSNGR 284 (457) Q Consensus 210 SRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~-----~~~~gr 284 (457) ..+-...+|-||.+|- .+|.++.|.+-|...|...||+.+|.---+ ++..++...+++.-. ...++. T Consensus 89 k~~~~~~iS~ell~ds----~~~l~~~i~~~l~~~ia~~~d~~~l~G~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (304) T protein:vir:10 89 KIGVIIPLSKEFLKWT----AKDFFNEVKPLIAEAFYKAFDQAVIFGTKS----PYNTSTSGKPLVEGAEEKGNVVTDTN 160 (304) T ss_pred EEEEeehhhHHHHhcc----hHHHHHHHHHHHHHHHHHHHHhhheeccCC----Cccccccccccccccccccccccccc Confidence 6667788999999875 367889999999999999999998863111 011111111111110 001111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEE Q lcl|NC_015286. 285 WSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKV 364 (457) Q Consensus 285 w~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~v 364 (457) ...+....++.++. .......-+||++.....|.. +.- .+|. .. ..+. .|+|. +++| T Consensus 161 ~~~~~i~~~~~~l~---------~~~~~~~~~v~~~~~~~~L~~---lkd---~~G~--~l-~~~~----~~~l~-G~PV 217 (304) T protein:vir:10 161 NLYVDLSALMATIE---------DEELDPNGVLTTRSFRSKMRN---ALD---ANDR--PL-FDAN----GNEIM-GLPL 217 (304) T ss_pred chHHHHHHHHHHhh---------hccCCcCEEEEcHHHHHHHHH---hhc---cCCc--Ee-ecCC----Ccccc-ceee Confidence 11222222322221 122334457899999988875 211 1111 10 0111 25664 5799 Q ss_pred EEecccccccc--------cceEEEEEecCCCccceeEEcccccc--ccccccCCcc-----cc---ceeeeeeeeee-e Q lcl|NC_015286. 365 YVDPYSANVAD--------KHYYVAGYKGTSPYDAGLFYCPYVPL--QQVRAINPDT-----FQ---PKIGFKTRYGM-V 425 (457) Q Consensus 365 y~D~y~~~~~~--------~dY~~vG~KG~~~~d~glfyaPYv~~--~~~~~~Dp~s-----~q---P~~g~~tRY~l-~ 425 (457) |++.+.|...+ +.++++|..++.+.+- ..+. ......|++. || =.+=...||++ + T Consensus 218 ~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~i~~------~~e~~~~~~~~~~~~g~~~~~f~~~~~~~r~~~r~~~~v 291 (304) T protein:vir:10 218 SYTGADVYDKKKSLALMGDWDYARYGILQGIEYAI------SEDATLTTLQASDASGQPVSLFERDMFALRATMHIAYMN 291 (304) T ss_pred EEecccccCCCCcEEEEEehhhEEEEEecceEEEE------eecceeeeecccccCccchhhhhcCcEEEEEEEEeccEe Confidence 98887764332 2223344433322110 0000 0011112221 22 33334568887 6 Q ss_pred ecccccc-ccCcc Q lcl|NC_015286. 426 SNPFAQG-LTQGS 437 (457) Q Consensus 426 ~nP~~~~-~~~~~ 437 (457) .||-+-. ++..+ T Consensus 292 ~~~~a~~~l~~a~ 304 (304) T protein:vir:10 292 VKPEAFATLKPTE 304 (304) T ss_pred ecccceEEEEecC Confidence 6665331 12111 No 69 >protein:vir:96223 Length: 324 # NCBI annotation: ORF011 # Family: family:all:507 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239571;genbank:gi:66395304;genbank:GeneID:5132771 Probab=86.10 E-value=0.048 Score=27.82 Aligned_cols=299 Identities=11% Similarity=0.080 Sum_probs=121.9 Q ss_pred cccchhhhhhhhhccchHHHHHHHHHHhhhhhhccccccccc---cccccccccceeh-hhhHHHhhhHhhhhceeeecC Q lcl|NC_015286. 22 IEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTGYTGAST---ATGPVAGFDPVLI-SLIRRSMPQLIAYDIAGVQPM 97 (457) Q Consensus 22 i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st---~tg~i~~~~P~Lv-~l~RRa~~~LI~~DI~GVQPm 97 (457) |+..++.+ .. .+++.+-....+=..+..+ .+++. ..-|.+. .+++.+..+.+..+++.+-|| T Consensus 1 ~~~~~~~~----------~~---~~~f~~~~~~~~~~~a~~~~~~~~~~~-lip~~~~~~ii~~~~~~s~l~~l~~~~~~ 66 (324) T protein:vir:96 1 MEQTQKLK----------LN---LQHFASNNVKPQVFNPDNVMMHEKKDG-TLLNDFTTPILQEVMENSKIMQLGKYEPM 66 (324) T ss_pred CCcchhhh----------HH---HHHHHHhhhhhhhcccccccccCCCcc-eechhHHHHHHHHHHhhchhhhhcceeec Confidence 22222111 11 1111111110000111111 11111 1223232 255666777788999999999 Q ss_pred CCcceeeeEeeeeecccCCcccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc Q lcl|NC_015286. 98 TGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGM 177 (457) Q Consensus 98 TGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm 177 (457) ++++.-|.- +.. ++ ++ .+ T Consensus 67 ~~~~~~~p~----~~~--~~------~a-------~~------------------------------------------- 84 (324) T protein:vir:96 67 EGTEKKFTF----WAD--KP------GA-------YW------------------------------------------- 84 (324) T ss_pred cCCceEEEE----Eec--Cc------ce-------ee------------------------------------------- Confidence 987643321 110 00 00 00 Q ss_pred chhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhh Q lcl|NC_015286. 178 TTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTI 257 (457) Q Consensus 178 ~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l 257 (457) .++++... ..+..|.+..+.+.|..+- ...|-||.+|-. .|.+++|.+.|...|...+++.||.-- T Consensus 85 -v~Eg~~~~--~~~~~f~~v~~~~~k~~~~-------~~is~ell~ds~----~~l~~~i~~~l~~aia~~~d~~~l~G~ 150 (324) T protein:vir:96 85 -VGEGQKIE--TSKATWVNATMRAFKLGVI-------LPVTKEFLNYTY----SQFFEEMKPMIAEAFYKKFDEAGILNQ 150 (324) T ss_pred -ecCCcccc--ccccceeEEEEEeEEEEEe-------ehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHhhhcC Confidence 00111111 1123455555555555544 448999999853 468899999999999999999988631 Q ss_pred hheeeeeeccccccceeEeeccccc----hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcce Q lcl|NC_015286. 258 YTNAVKGAQNNTATAGVFDLDVDSN----GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLD 333 (457) Q Consensus 258 ~tvA~rgk~~~v~~~Gv~Dl~~~~~----grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~ 333 (457) - .+....|++....... +.-..+....++.++ ....+..+.++||+.....|... . T Consensus 151 g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i---------~~~~~~~~~~i~n~~~~~~L~~l---k 210 (324) T protein:vir:96 151 G--------NNPFGKSIAQSIKKTNKVIKGDFTQDNIIDLEALL---------EDDELEANAFISKTQNRSLLRKI---V 210 (324) T ss_pred C--------CCCcCccccccccccceecccccchHHHHHHHHhh---------hhccCCCCEEEEcHHHHHHHHHh---h Confidence 1 1111122221110000 000012122232222 12345566789999998887752 1 Q ss_pred ecccccccccccccccCCceEEEEecCceEEEEeccccccc------ccceEEEEEecCCCccce--eEEcccccccccc Q lcl|NC_015286. 334 YSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVA------DKHYYVAGYKGTSPYDAG--LFYCPYVPLQQVR 405 (457) Q Consensus 334 ~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~------~~dY~~vG~KG~~~~d~g--lfyaPYv~~~~~~ 405 (457) ..+|..-. .+... ++| .+++|++++..+... ++.++++|..++-+.+.+ ..+.++...+... T Consensus 211 ---d~~G~~~~--~~~~~----~~l-~G~PV~~~~~~~~~~~~~~~gd~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 280 (324) T protein:vir:96 211 ---DPETKERI--YDRNS----DSL-DGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTP 280 (324) T ss_pred ---CCCCCeee--cCCCC----Ccc-cceeeEeecCCCCCcceEEEEecceEEEEEecCcEEEEeecccccccccccccc Confidence 11121111 11222 344 357777765433111 111233333332221100 0000000000000 Q ss_pred ccCCccccceeeeeeeeee-eeccccc--------cccCccccc Q lcl|NC_015286. 406 AINPDTFQPKIGFKTRYGM-VSNPFAQ--------GLTQGSGAL 440 (457) Q Consensus 406 ~~Dp~s~qP~~g~~tRY~l-~~nP~~~--------~~~~~~~~~ 440 (457) .-.-..-|=.+=..-||+. +.+|-+- +.++.++.+ T Consensus 281 ~~~~~~n~v~~r~~~r~d~~v~~~~a~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:96 281 VNLFEQDMVALRATMHVALHIADDKAFAKLVPADKRTDSVPGEV 324 (324) T ss_pred hhhhhcCcEEEEEEEEeccEEecccceEEEecccccCCCCCCCC Confidence 0000111223334567777 5666421 223333333 No 70 >protein:vir:739 Length: 231 # NCBI annotation: major structural protein 4 # Family: family:all:522 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108716;genbank:gi:13487838;genbank:GeneID:920884 Probab=86.08 E-value=0.048 Score=27.81 Aligned_cols=217 Identities=11% Similarity=0.071 Sum_probs=102.3 Q ss_pred ccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHH Q lcl|NC_015286. 160 LNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELAN 239 (457) Q Consensus 160 ~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELan 239 (457) -|....|+....- .-...+|.+.++.. .+..+|++ ...+++.|-+.=.-++|=|- .|.+ + =|.-.|..+ T Consensus 1 ~~~~~~Gdtit~P----~~iGda~~v~eG~~-i~~~~l~~--t~~~atIk~~gk~~~itD~a--~l~~-~-gDp~~ea~~ 69 (231) T protein:vir:73 1 ENGINLANLCEYP----NDIGDAADVAEGGE-ISLDKIGT--TTKSVTIKKAAKGTEITDEA--ALSG-Y-GDPIGESNK 69 (231) T ss_pred CccccCCceEEec----ccccchhhhcCCCc-CChhhccc--cceeeeEeeeccceeeeHHH--Hhhc-c-CchHHHHHH Confidence 0000011100000 01234555554432 34666776 45555556554444444332 2444 3 388999999 Q ss_pred HHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEc Q lcl|NC_015286. 240 ILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICS 319 (457) Q Consensus 240 ILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S 319 (457) -|+..|+..+|.||+..+-+.+...+ ..+++ +.+-++..+ +.-| -....+++|+ T Consensus 70 Q~~~~iA~kvD~di~~~~~~a~l~~~-------~~~t~-------d~i~~A~~~---fgde---------~~~~~vivv~ 123 (231) T protein:vir:73 70 QLGLSLANKVDDDLLKAAKTTSQTVS-------TKANV-------DGVQAALDI---FNDE---------DAQAYVLIVN 123 (231) T ss_pred HHHHHHHHhhhHHHHHhhcccccccc-------ccccH-------HHHHHHHHH---hccc---------cccceEEEEc Confidence 99999999999999987765443211 11111 122222222 2211 2466799999 Q ss_pred hhHHHHHhhCCcceeccc-ccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccc Q lcl|NC_015286. 320 ADVASALGMAGVLDYSPA-LNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPY 398 (457) Q Consensus 320 ~~va~~L~~sg~l~~~~~-~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPY 398 (457) |++++-|...- ++... .++ +.+ --.+-..|.+. +++|+++...| +++.++++| T Consensus 124 p~~~~~Lrk~~--~~~~~~~~~---g~~--i~~~G~iG~i~-G~~Vi~S~~~~------------------~~~~~~~~~ 177 (231) T protein:vir:73 124 PKDAAKIRKDA--NAKNIGSEV---GAN--ALINGTYADVL-GAQIVRSKKLA------------------EGSALMFKI 177 (231) T ss_pred chHHHhhhhcc--chhhhhhhh---ccc--eeeecccceEc-ceEEEEcCCCC------------------CCceeeeeE Confidence 99998876521 11110 000 011 11233467774 48888885544 233345555 Q ss_pred cccccc------c------ccCCccccceeeeeeeeee-eeccccccccCcccccccccchheeeeeeeec Q lcl|NC_015286. 399 VPLQQV------R------AINPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGALTANTNRYYRRVQVANL 456 (457) Q Consensus 399 v~~~~~------~------~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~n~~~~r~~~~~l 456 (457) +..... + --|+..+.-.+----.|++ ..||=-. .. .-++++ T Consensus 178 i~~~gAl~~~~k~~~~vEtdRd~~~k~~~i~~~~~y~v~l~~~~~v---------v~--------~t~~g~ 231 (231) T protein:vir:73 178 VSNSPALKLVLKRGVQVETDRDIVTKTTVITADEHYAAYLYDLTKV---------VN--------ITFTGV 231 (231) T ss_pred EeeccceeeeecccceeeccccccccccEEEEeEEEEEEEEcCccE---------EE--------EEeecC Confidence 421100 0 0155555555555555555 3343210 00 000111 No 71 >protein:vir:99749 Length: 324 # NCBI annotation: head protein # Family: family:all:507 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004307;genbank:gi:122891761;genbank:GeneID:4712304 Probab=85.80 E-value=0.05 Score=27.71 Aligned_cols=298 Identities=10% Similarity=0.051 Sum_probs=126.1 Q ss_pred hhhhccchHHHHHHHHHHhhhhhhccccccccccccccc--ccccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEe Q lcl|NC_015286. 31 VAQLLENQEKAITEEASVLNETLQTTGYTGASTATGPVA--GFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAM 107 (457) Q Consensus 31 ~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~tg~i~--~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAM 107 (457) |-+- ||.+..+ +++.+.....+-+.+..+++.+.+ ..-+.+ -.+++.+..+.+..+++-+.||++.+.-|. T Consensus 1 ~~k~-~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~lip~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~p-- 74 (324) T protein:vir:99 1 MEQT-QKLKLNL---QHFASNNVKPQVFNPDNVMMHEKKDGTLLNDFTTPILQEVMENSKIMRLGKYEPMEGTEKKFT-- 74 (324) T ss_pred CCCc-hHhhHHH---HHHHHHhhhhhhccccceeccCCCcceechhHHHHHHHHHHhhchhhhhcceeeccCCceEEE-- Confidence 1111 1111111 111111111111112222111111 111112 224555556677888999999987653321 Q ss_pred eeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCC Q lcl|NC_015286. 108 RTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDD 187 (457) Q Consensus 108 RsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~ 187 (457) +... ++ ++ .+ .+| T Consensus 75 --~~~~--~~------~a-------~~----------------------------------------------v~E---- 87 (324) T protein:vir:99 75 --FWAD--KP------GA-------YW----------------------------------------------VGE---- 87 (324) T ss_pred --EEec--Cc------ce-------eE----------------------------------------------ecc---- Confidence 1110 00 00 00 011 Q ss_pred CCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecc Q lcl|NC_015286. 188 SSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQN 267 (457) Q Consensus 188 ~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~ 267 (457) +..+++...++++++.+.|.-+---..|-||.+|-. .|.+++|.+.|+..|...+++.||.---+ T Consensus 88 ---g~~~~~~~~~~~~v~~~~~k~~~~~~iS~ell~ds~----~~l~~~i~~~l~~ai~~~~d~~~l~G~g~-------- 152 (324) T protein:vir:99 88 ---GQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY----SQFFEEMKPMIAEAFYKKFDEAGILNQGN-------- 152 (324) T ss_pred ---CccccccccceeEEEEeeEEEEEeehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHhhhcCCC-------- Confidence 112344444556666666666666779999999974 46899999999999999999999853211 Q ss_pred ccccceeEeeccc----cchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccc Q lcl|NC_015286. 268 NTATAGVFDLDVD----SNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNA 343 (457) Q Consensus 268 ~v~~~Gv~Dl~~~----~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~ 343 (457) +....|++..... ..+.-..+....++..+ ....+....+|+|+.....|.. +. ..+|. T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l---------~~~~~~~~~~v~n~~~~~~L~~---l~---d~~g~-- 215 (324) T protein:vir:99 153 NPFGKSIAQSIEKTNKVIKGDFTQDNIIDLEALL---------EDDELEANAFISKTQNRSLLRK---IV---DPETK-- 215 (324) T ss_pred CccCccccccccccceeccccCCHHHHHHHHHhh---------hhccCCCCEEEEcHHHHHHHHH---hh---cCCCc-- Confidence 1111222111100 00111123333333333 2233455568899999988875 21 11111 Q ss_pred ccccccCCceEEEEecCceEEEEecccccccccceEEEEE--------ecCCCccc--eeEEccccccccccccCCcccc Q lcl|NC_015286. 344 LTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGY--------KGTSPYDA--GLFYCPYVPLQQVRAINPDTFQ 413 (457) Q Consensus 344 ~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~--------KG~~~~d~--glfyaPYv~~~~~~~~Dp~s~q 413 (457) ....+.. .++|.| ++|++.+..+ .+...+++|- .++...+- -.+...+........-.-.+-| T Consensus 216 ~~~~~~~----~~~l~G-~PVv~~~~~~--~~~~~~i~gd~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~f~~~~ 288 (324) T protein:vir:99 216 ERIYDRN----SDTLDG-LPVVNLKSSN--LKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTPVNLFEQDM 288 (324) T ss_pred eeecCCC----Cccccc-eeEEeecCCC--CCcceEEEEecccEEEEEecCcEEEEeecccccccccccccchhhhhcCc Confidence 1111112 245544 6777776543 2223334332 22111000 0000000000000000001112 Q ss_pred ceeeeeeeeee-eeccccc--------cccCccccc Q lcl|NC_015286. 414 PKIGFKTRYGM-VSNPFAQ--------GLTQGSGAL 440 (457) Q Consensus 414 P~~g~~tRY~l-~~nP~~~--------~~~~~~~~~ 440 (457) =.+=...|++. +.||-+- +.+..++.+ T Consensus 289 ~~~r~~~r~d~~v~~~~a~~~lt~a~~~~~~~~~~~ 324 (324) T protein:vir:99 289 VALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV 324 (324) T ss_pred EEEEEEEEEccEEecccceEEEEeccCCCCCCCCCC Confidence 23333467776 5666532 223334444 No 72 >protein:vir:4339 Length: 395 # NCBI annotation: major head protein # Family: family:all:585 # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061502;genbank:gi:9635591;genbank:GeneID:1262860 Probab=84.32 E-value=0.061 Score=27.23 Aligned_cols=325 Identities=11% Similarity=0.038 Sum_probs=121.3 Q ss_pred Cc-------------hHHHHHHhhHhhccccc--cccccchhhhhhhhhccc----------hHHHHHHHHHHhhhhhhc Q lcl|NC_015286. 1 MS-------------LQQLQEKWAPVLNHESL--PEIEDTHKRGVVAQLLEN----------QEKAITEEASVLNETLQT 55 (457) Q Consensus 1 ~~-------------~~~l~~~w~~~l~~~~~--~~i~~~~~~~v~~~~~~n----------~~~~~~~~~~~~~e~~~~ 55 (457) +. .+++.++=..+...... -++....++.....--.+ ........+.+.+...+. T Consensus 25 ~~e~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (395) T protein:vir:43 25 QAEQVNTQIANFGEMNKETRAKVDELLTAQGELQARLSAAEQAMLANEKRDGGEEAPKTAGQMVAESLKEQGVTSSLRGS 104 (395) T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHhhhh Confidence 00 11111111111000000 000000000000000000 000000000011111000 Q ss_pred ccc----cccccccccc-ccccce-ehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc Q lcl|NC_015286. 56 TGY----TGASTATGPV-AGFDPV-LISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE 129 (457) Q Consensus 56 ~g~----~~~st~tg~i-~~~~P~-Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE 129 (457) +.. .+..+++++- .-..|. .-.++.+..+..+..+++.++||.+++.-+.- ....... + T Consensus 105 ~~~~~~~~~~~~~~~~~g~~vp~~~~~~ii~~~~~~~~l~~l~~~~~~~~~~~~~~~----~~~~~~~-------a---- 169 (395) T protein:vir:43 105 HRVSMPRSAITSIDGSGGALVAPDRRPGVVAAPQRRLTIRDLVAPGTTESNSVEYVR----ETGFVNN-------A---- 169 (395) T ss_pred hhhhhhhhhhcccCCCCccccchhhHHHHHHHHHhhhhHHhhccceecCCCceEEEE----EecCCCc-------e---- Confidence 000 0111111111 111222 22355556677888999999999887532211 1100000 0 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEee Q lcl|NC_015286. 130 PNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTAR 209 (457) Q Consensus 130 a~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAK 209 (457) .+ .+|. ...++-..++++.+...+ T Consensus 170 ---~~----------------------------------------------v~E~-------~~~~~~~~~~~~i~~~~~ 193 (395) T protein:vir:43 170 ---AP----------------------------------------------VSEG-------TQKPYSDLTFELENAPVR 193 (395) T ss_pred ---ee----------------------------------------------ecCC-------ccccccccceeEEEEeee Confidence 00 0110 112223334455555555 Q ss_pred cccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec--------ccc Q lcl|NC_015286. 210 ARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD--------VDS 281 (457) Q Consensus 210 SRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~--------~~~ 281 (457) .-+-...+|-||.||.- +.++.|.+-|+..+...+|+.||.- + | .+-...|++... ... T Consensus 194 k~~~~~~is~ell~d~~-----~l~~~v~~~la~a~~~~~d~~~l~G----~--g--~~~~~~Gi~~~~~~~~~~~~~~~ 260 (395) T protein:vir:43 194 TIAHLFKASRQILDDAS-----ALQSYIDARARYGLMLVEECQLLYG----N--G--TGANLHGIIPQAQAYAPPSGVVV 260 (395) T ss_pred eEEEeehhhHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHhc----c--C--CCCcccccccccccccccccccc Confidence 55556779999999853 3688899999999999999988852 0 0 001112332211 000 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCc Q lcl|NC_015286. 282 NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGR 361 (457) Q Consensus 282 ~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~ 361 (457) .+--..+....+++.+ ...-+++..+|+|+.....|.. +. ..+|. ....+.. ..-.++|. + T Consensus 261 ~~~~~~~~i~~~~~~~---------~~~~~~~~~~vmn~~~~~~l~~---lk---d~~G~--~i~~~~~-~~~~~~l~-G 321 (395) T protein:vir:43 261 TAEQRIDRIRLAILQA---------QLAEFPASGIVLNPIDWALIEL---NK---DAENR--YIIGSPQ-NGTTPTLW-R 321 (395) T ss_pred ccchhHHHHHHHHHhh---------ccccCCCcEEEEcHHHHHHHHH---hh---ccCCc--eeccccc-cCCCceec-c Confidence 0000111112222222 2233456678999999877764 21 11111 1112221 12245675 4 Q ss_pred eEEEEecccccccccceEEEEEecCCCccceeEEcccccccccccc--CCcccc---ceeeeeeeeee-eecccccc-cc Q lcl|NC_015286. 362 IKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAI--NPDTFQ---PKIGFKTRYGM-VSNPFAQG-LT 434 (457) Q Consensus 362 ~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~--Dp~s~q---P~~g~~tRY~l-~~nP~~~~-~~ 434 (457) ++|+++.+.|.+. +++|--.. .-+++ .-....+... +-..|+ =.+=+..|++. +.+|-+-. ++ T Consensus 322 ~pVv~~~~~~~~~----~~~gd~~~----~~~~~--~~~~~~i~~~~~~~~~f~~~~~~~r~~~r~d~~v~~~~a~~~~~ 391 (395) T protein:vir:43 322 LPVVETQAITQDE----FLTGAFSL----GAQIF--DRMDIEVLVSTENDKDFENNMVTIRAEERLAFAVYRPEAFVTGS 391 (395) T ss_pred eeeEEcCCCCCCc----EEEEeccc----eEEEE--EecceEEEEeccccchhhcCcEEEEEEEeeccEEecccceEEEE Confidence 8999998877422 23332100 00000 0000000100 011232 23333457777 45554321 12 Q ss_pred Cccc Q lcl|NC_015286. 435 QGSG 438 (457) Q Consensus 435 ~~~~ 438 (457) -..+ T Consensus 392 ~taa 395 (395) T protein:vir:43 392 LTAS 395 (395) T ss_pred eccC Confidence 1111 No 73 >protein:vir:80930 Length: 278 # NCBI annotation: Cps # Family: family:all:522 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468392;genbank:gi:157324966;genbank:GeneID:5601363 Probab=84.31 E-value=0.061 Score=27.23 Aligned_cols=274 Identities=11% Similarity=0.053 Sum_probs=119.0 Q ss_pred cCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcc Q lcl|NC_015286. 114 ERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTA 193 (457) Q Consensus 114 ~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~ 193 (457) .... .+....-|..|-.+.+=-.. .. .........-.+.. +. ...|.......-. ....+|.+.++. ... T Consensus 1 Ma~~-~T~~~~~iiPev~s~~v~~~---~~-~~~v~~~~~~~~~~-l~-g~~G~tv~ip~~~--~~g~a~~~~~g~-~i~ 70 (278) T protein:vir:80 1 MADL-TTKLANLIDPEVMGPMISAK---LP-KAIKFGKIAPIDNS-LE-GQPGSEITVPKYK--YIGDAQDVAEGA-AID 70 (278) T ss_pred CCCc-ceehhheecHHHHHHHHHHH---HH-Hhhhhcccceeccc-cc-CCCCCEEEEeeec--cCCcceeecCCC-cCc Confidence 1110 00001112222111110000 00 00000000000000 00 0001100000000 112334343322 223 Q ss_pred cccceeEEEEEEEEeecccccceeeHHHHHhHHH-hhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccc Q lcl|NC_015286. 194 FREMGFSIEKVTVTARARALKAEYSIELAQDLKA-IHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATA 272 (457) Q Consensus 194 f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkA-iHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~ 272 (457) ..+ .+..+++++-|-|+- + | + .-|+.+ .-+-|.-.+..+-++..+..+++++++..|.+.... +..+ T Consensus 71 ~~~--lt~~~~~~~i~~~~~-a-~--~-v~D~~~~~~~~d~~~~~~~~~a~~~a~~~d~~l~~~l~~a~~~-----~~~~ 138 (278) T protein:vir:80 71 YSA--LETESVKHGIKKAGK-G-V--K-LTDESVLSGYGDPVEEAQKQIRMAIASKVDNDILEEALTTTLE-----VKGA 138 (278) T ss_pred ccc--cccceeeEeeehhhc-c-c--c-ccHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cccc Confidence 344 445677777776653 2 2 2 334444 346789999999999999999999999987543221 1111 Q ss_pred eeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCc Q lcl|NC_015286. 273 GVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSS 352 (457) Q Consensus 273 Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~ 352 (457) -..|..+. +.+.+-.++-++..+ .-....+++++|.+++.|.......+.+.....+ ....+ T Consensus 139 ~t~~~~~~-----~~~~~~da~~~l~~~--------~~~~~~~ivv~p~~~~~L~k~~~~~~~~~~~~g~-----~~~~~ 200 (278) T protein:vir:80 139 INIGLIDK-----IENTFTDAPDAIEDE--------SITTTGVLFLNYKDTAKLREEAAGSWTKASQLGD-----DLLVK 200 (278) T ss_pred cccchhhh-----HHHHHHHHHHhhccc--------CCCcccEEEECHHHHHHHHhhhhhhccccccccc-----cceee Confidence 11121100 111121121112111 1122348999999999997765555554333111 12234 Q ss_pred eEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccc-cCCccccceeeeeeeeee-eecccc Q lcl|NC_015286. 353 TLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRA-INPDTFQPKIGFKTRYGM-VSNPFA 430 (457) Q Consensus 353 ~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~-~Dp~s~qP~~g~~tRY~l-~~nP~~ 430 (457) ..+|++. |++||++...|+. .-|+ ++ +|.- + |+..= + ..+.. -||..++-.|-...+||+ ..||-. T Consensus 201 G~ig~~~-G~~Vi~s~~~p~~--t~~l-~~-~gAi----~-~~~~~-~-~~vE~~Rd~~~~~d~i~~~~~yg~~v~~~~~ 268 (278) T protein:vir:80 201 GAFGELL-GWEIVRTKKLADG--NALA-VK-AGAL----K-TFLKR-N-LLAESGRDMDHKLTKFNADQHYAVALVDETK 268 (278) T ss_pred ccceeec-ceeEEEcCCCCcc--eEEE-Ee-ccce----e-eeecC-C-cccccccchhhccceeeeeeEEEEEEEcCcc Confidence 5688884 6899999776631 1222 21 1211 1 22110 1 11222 299999999999999999 778863 Q ss_pred cc-ccCccccccccc Q lcl|NC_015286. 431 QG-LTQGSGALTANT 444 (457) Q Consensus 431 ~~-~~~~~~~~~~~~ 444 (457) .- ++-.. |+ T Consensus 269 ~v~it~~a-----~~ 278 (278) T protein:vir:80 269 AVKVVPVA-----GN 278 (278) T ss_pred eEEEeecc-----CC Confidence 21 11111 11 No 74 >protein:vir:100135 Length: 418 # NCBI annotation: gp5 # Family: family:all:585 # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945035;genbank:gi:38707895;genbank:GeneID:2744182 Probab=83.80 E-value=0.066 Score=27.07 Aligned_cols=324 Identities=9% Similarity=0.001 Sum_probs=126.5 Q ss_pred Cc------hHHHHHHhhHhhccc--------cccccccchhhhhhhhhccchHHHHHHHHHHhhh---------hhhccc Q lcl|NC_015286. 1 MS------LQQLQEKWAPVLNHE--------SLPEIEDTHKRGVVAQLLENQEKAITEEASVLNE---------TLQTTG 57 (457) Q Consensus 1 ~~------~~~l~~~w~~~l~~~--------~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e---------~~~~~g 57 (457) ++ .++|..+...+-+.. ..+........+.....+... .+++.-...+.+ ...+-. T Consensus 55 ~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (418) T protein:vir:10 55 LGVETKATVDELLIKQGELQARLLEAEQKLARGGGSAELETPKTLGQLVTES-EEMKGMDGSARKSVRVRVDRKSIMNVP 133 (418) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhhhHHhhhH-HHHHHHHHHHhhhhhhhhHHHHHHHhh Confidence 01 111222222221100 000000000100011110000 000000000000 000000 Q ss_pred cccccccccccccccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccccc Q lcl|NC_015286. 58 YTGASTATGPVAGFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSG 136 (457) Q Consensus 58 ~~~~st~tg~i~~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG 136 (457) ....+++++.-.-.-|.+. .+++...+..+..+++.+-||++++.-+. | ..+ .++ ...| T Consensus 134 ~~~~~~~~~~g~lvp~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~--~--~~~-~~~-------------~a~~-- 193 (418) T protein:vir:10 134 ATVGSGVSGSNSLVVADRQAGIIAPPQRKMTIRDLLMPGQTSSSSIEYT--V--ETG-FTN-------------NAAA-- 193 (418) T ss_pred hhccCCCCCCccccchhHHHHHHHHHhhhhhHHhhcceeeccCCceeEE--E--Eec-CCC-------------ceee-- Confidence 1111112211112222222 35566667778899999999988753211 1 100 000 0000 Q ss_pred cccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccce Q lcl|NC_015286. 137 GPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAE 216 (457) Q Consensus 137 ~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAE 216 (457) .+|. ...++-..++++++..+|.-+-... T Consensus 194 --------------------------------------------v~E~-------~~~~~~~~~f~~v~~~~~k~~~~~~ 222 (418) T protein:vir:10 194 --------------------------------------------VAEG-------AQKPTSDLKFNLKNQPVRTIAHLFK 222 (418) T ss_pred --------------------------------------------eccC-------ccccccccceeeEEEeeeeEEEeeh Confidence 0010 0112222334566666666666678 Q ss_pred eeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec------cccchhHHHHHH Q lcl|NC_015286. 217 YSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD------VDSNGRWSVEKF 290 (457) Q Consensus 217 YT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~------~~~~grw~~e~~ 290 (457) +|-||.||.- |.++.|.+-|+..|..-+|+-||.---+ +....|++... ....+--.++.. T Consensus 223 is~ell~ds~-----~l~~~i~~~l~~a~~~~~d~a~l~G~g~--------~~~p~Gi~~~~~~~~~~~~~~~~~~~~~i 289 (418) T protein:vir:10 223 ASRQILDDAP-----ALQSYIDGRARYGLQLTEEGQILKGDGT--------GANILGILPQASAFMPSITLANATPIDKI 289 (418) T ss_pred hhHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHhccCCC--------CccccccccccccccccccccccccHHHH Confidence 9999999852 4778888888888888888887742100 01122322111 111110112223 Q ss_pred HHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEeccc Q lcl|NC_015286. 291 KGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYS 370 (457) Q Consensus 291 k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~ 370 (457) ..+++++ ....+..+-+|||+.....|.. +. ..+|. ....+++. ...|+|. +++|+++.+. T Consensus 290 ~~~~~~~---------~~~~~~~~~~v~n~~~~~~L~~---lk---d~~G~--~i~~~~~~-~~~~~l~-G~pV~~~~~~ 350 (418) T protein:vir:10 290 RLALLQA---------VLAEFPATGIVLNPIDWASIEL---TK---DSQGR--YIVGNPVN-GTTPRLW-NLPVVETQAM 350 (418) T ss_pred HHHHHhh---------ccccCCCCEEEEcHHHHHHHHH---hh---cCCCc--eecccccc-CCCceec-ceeeEEcCCC Confidence 3333333 2234566678999999988765 21 11121 11112221 1246775 4799999887 Q ss_pred ccccccceEEEEE---------ecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccccCccccc Q lcl|NC_015286. 371 ANVADKHYYVAGY---------KGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGAL 440 (457) Q Consensus 371 ~~~~~~dY~~vG~---------KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~ 440 (457) |.+. +++|- +++.. +=..||... +-...+=.+=+..|++. ..+|-+-..-. -... T Consensus 351 p~~~----~~~gd~s~~~~~~~~~~~~----i~~~~~~~~------~f~~~~~~~r~~~~~d~~~~~~~a~~~~~-~~~~ 415 (418) T protein:vir:10 351 TANE----FLVGAFSMAAQIFDRMEIE----VLLSTENVD------DFEKNMVSIRAEERLALAVYRPESFVTGA-LVEQ 415 (418) T ss_pred CCCc----EEEeeccceEEEEEecceE----EEEecccch------hhhcCceEEEEEEeeccEEecccceEEEE-eccC Confidence 7422 23331 11111 111222110 01122223334557776 55564321100 0000 Q ss_pred ccc Q lcl|NC_015286. 441 TAN 443 (457) Q Consensus 441 ~~~ 443 (457) ..| T Consensus 416 ~~g 418 (418) T protein:vir:10 416 AGG 418 (418) T ss_pred CCC Confidence 111 No 75 >protein:vir:2344 Length: 397 # NCBI annotation: gp14 # Family: family:all:507 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075281;genbank:gi:12657868;genbank:GeneID:920118 Probab=83.60 E-value=0.067 Score=27.02 Aligned_cols=295 Identities=14% Similarity=0.045 Sum_probs=121.7 Q ss_pred cccccccc-----cccccc-cccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccc Q lcl|NC_015286. 56 TGYTGAST-----ATGPVA-GFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFN 128 (457) Q Consensus 56 ~g~~~~st-----~tg~i~-~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfn 128 (457) -|+++|+. ++.+.+ -.-|.++ .+++++....+..+++-+.||++++.-|. +... ++ ++ T Consensus 1 ~g~~~e~~~~~~~~t~~~~g~l~~~~~~~ii~~l~~~s~i~~l~~~~~~~~~~~~ip----~~~~--~~------~a--- 65 (397) T protein:vir:23 1 MGFSADHSQIAQTKDTMFTGYLDPVQAKDYFAEAEKTSIVQRVAQKIPMGATGIVIP----HWTG--DV------SA--- 65 (397) T ss_pred CCcCHHHHHHhhccCCCCccccchhHHHHHHHHHHhccchhhhcceeeccCCceEEE----EEcC--Cc------ce--- Confidence 33333222 111111 1222222 23444555667788889999987652221 1100 00 00 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEe Q lcl|NC_015286. 129 EPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTA 208 (457) Q Consensus 129 Ea~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtA 208 (457) .| .+| +..+++-..+++++++.. T Consensus 66 ----~w----------------------------------------------v~E-------g~~~~~s~~~f~~v~l~~ 88 (397) T protein:vir:23 66 ----QW----------------------------------------------IGE-------GDMKPITKGNMTKRDVHP 88 (397) T ss_pred ----EE----------------------------------------------ecC-------CccccccccceeEEEEee Confidence 00 011 012233333446666777 Q ss_pred ecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccc---cchhH Q lcl|NC_015286. 209 RARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVD---SNGRW 285 (457) Q Consensus 209 KSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~---~~grw 285 (457) |..+-.-.+|-||.+|-. .|.+++|.+-|...|...+|+.+|.---+- + ...++.+.... ..+-. T Consensus 89 ~k~~~~v~iS~ell~ds~----~~l~~~i~~~l~~aia~~~d~a~l~G~gt~----~----~~~~~~~~~~~~~~~~~~~ 156 (397) T protein:vir:23 89 AKIATIFVASAETVRANP----ANYLGTMRTKVATAIAMAFDNAALHGTNAP----S----AFQGYLDQSNKTQSISPNA 156 (397) T ss_pred EEEEEeehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHhhcccCC----c----ccccccccccceeeecccc Confidence 777777789999999863 678999999999999999999998632110 0 00111110000 00000 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhh----CCcceecccccccccccccccCCceEEEEecCc Q lcl|NC_015286. 286 SVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGM----AGVLDYSPALNGNNALTGVDDTSSTLVGTLNGR 361 (457) Q Consensus 286 ~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~----sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~ 361 (457) ..+....++..+. .--+..+-+|++++....|.. -|-.-+.|...+. .......|+| .+ T Consensus 157 ~~~~~~~~~~~l~---------~~~~~~a~~vmn~~~~~~L~~lkd~~G~~i~~~~~~~~-------~~~~~~~~tl-~G 219 (397) T protein:vir:23 157 YQGLGVSGLTKLV---------TDGKKWTHTLLDDTVEPVLNGSVDANGRPLFVESTYES-------LTTPFREGRI-LG 219 (397) T ss_pred hhHHHHHHHHhhh---------hcccCCCEEEEcHHHHHHHHHhhccCCceeeccccccc-------ccccccCcee-ee Confidence 0111111222222 223455678999999988775 1222222222111 0111223566 57 Q ss_pred eEEEEeccccccc------ccceEEEEEecCCCccceeEEccccccccccccCCc----c----ccceeeeeeeeee-ee Q lcl|NC_015286. 362 IKVYVDPYSANVA------DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPD----T----FQPKIGFKTRYGM-VS 426 (457) Q Consensus 362 ~~vy~D~y~~~~~------~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~----s----~qP~~g~~tRY~l-~~ 426 (457) ++|+++...|.+. ++..+++|..+....+-+= +.......|+. + -|=.+=...|++. +. T Consensus 220 ~Pv~~s~~~~~g~~~~~~gDfs~~~i~~~~~i~i~~~~------e~~~~~~~~~~~~~~~lf~~d~v~~ra~~r~d~~v~ 293 (397) T protein:vir:23 220 RPTILSDHVAEGDVVGYAGDFSQIIWGQVGGLSFDVTD------QATLNLGSQESPNFVSLWQHNLVAVRVEAEYGLLIN 293 (397) T ss_pred eeEEEeCCCCCCceEEEEeecceEEEEEEeceEEEEee------eeeeeeccccccceeeeeeccceeEEEEeeecccee Confidence 8999998877432 1122233333222111000 00000000111 0 1122233345555 33 Q ss_pred ccccccccC----cccc-cc-cccch------h-----------eeeeeeeecC Q lcl|NC_015286. 427 NPFAQGLTQ----GSGA-LT-ANTNR------Y-----------YRRVQVANLM 457 (457) Q Consensus 427 nP~~~~~~~----~~~~-~~-~~~n~------~-----------~~r~~~~~l~ 457 (457) +|-+-..-. .... .. .+... | +.-..|+.-| T Consensus 294 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 347 (397) T protein:vir:23 294 DVNAFVKLTFDPVLTTYALDLDGASAGNFTLSLDGKTSANIAYNASTATVKSAI 347 (397) T ss_pred cccceEEEeeccccceeeecccccCcceEEEEecCccccCcccccchhhhHHHh Confidence 333211100 0000 00 00000 0 0111111111 No 76 >protein:vir:104085 Length: 320 # NCBI annotation: gp17 # Family: family:all:507 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655596;genbank:gi:109392467;genbank:GeneID:4156953 Probab=82.79 E-value=0.074 Score=26.79 Aligned_cols=289 Identities=11% Similarity=0.050 Sum_probs=119.3 Q ss_pred hccchHHHHHHHHHHhhhhhhccccccccccccccc-cccceehh-hhHHHhhhHhhhhceeeecCCCcceeeeEeeeee Q lcl|NC_015286. 34 LLENQEKAITEEASVLNETLQTTGYTGASTATGPVA-GFDPVLIS-LIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNY 111 (457) Q Consensus 34 ~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~tg~i~-~~~P~Lv~-l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY 111 (457) +.+.+ ..=.|.+.+. +++++... ..-|.+.. +++.+....+..+++-+.||++.+.-|. +. T Consensus 1 ~~~~~-~~~~~~~~~~------------~t~~~~~~~~ip~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~p----~~ 63 (320) T protein:vir:10 1 MAAGT-AFQVDHAQIA------------QTGDTMFKGYLEPEQAKDYFAEAEKTSIVQQFAQKVPMGTTGQKIP----HW 63 (320) T ss_pred CCCCc-cCCHHHHHhh------------ccccccccccccHHHHHHHHHHHHhccchhhhcceeeccCCceEEE----EE Confidence 11111 0000111111 11111111 12222222 4444555667888999999987653322 11 Q ss_pred cccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCC Q lcl|NC_015286. 112 GAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSN 191 (457) Q Consensus 112 ~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~ 191 (457) .+ ++ ++ . -.+|. T Consensus 64 ~~--~~------~a-------~----------------------------------------------~v~E~------- 75 (320) T protein:vir:10 64 IG--DV------SA-------Q----------------------------------------------WIGEG------- 75 (320) T ss_pred eC--Cc------ce-------E----------------------------------------------EecCC------- Confidence 10 00 00 0 00110 Q ss_pred cccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhh-------hheeeee Q lcl|NC_015286. 192 TAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTI-------YTNAVKG 264 (457) Q Consensus 192 ~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l-------~tvA~rg 264 (457) ..+++-..++++++...|..+-...+|.||.+|-. .|.++.|.+.|...|...+|+-+|.-= ...... T Consensus 76 ~~~~~~~~~f~~v~~~~~k~~~~~~is~ell~ds~----~~l~~~i~~~l~~a~a~~~d~a~l~G~g~~~~~~~~~~~~- 150 (320) T protein:vir:10 76 DMKPITKGNMTSQNIAPHKIATIFVASAETVRANP----ANYLGTMRTKVATAFAMAFDSAALNGTDSPFPTYLAQTTK- 150 (320) T ss_pred ccccccccceeEEEEeeEEEEEeehhhHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccc- Confidence 11222333345666666666677789999999865 478899999999999999999987421 000000 Q ss_pred eccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccc Q lcl|NC_015286. 265 AQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNAL 344 (457) Q Consensus 265 k~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~ 344 (457) ...+...+.... +.-+..+ .++. .+... ..........+|+++.....|.. ++-+ +|.--+ T Consensus 151 -~~~~~~~~~~~~----~~~~~~~---~~~~----~~~~~-~~~~~~~~~~~v~n~~~~~~L~~---lkd~---~G~~l~ 211 (320) T protein:vir:10 151 -SVSLADPGGATA----SDLTAYD---AVAV----NGLSL-LVNAKKKWTHTLLDDIVEPILNG---AKDK---NGRPLF 211 (320) T ss_pred -cccceecccccc----cccccHH---HHHH----HHHhh-hhcccCCCcEEEEcHHHHHHHHH---hhcc---CCceee Confidence 000111111111 1111111 1111 11111 12233445688999999988865 2111 110000 Q ss_pred c---ccccCCceEEEEecCceEEEEeccccccc------ccceEEEEEecCCCccceeEEccccccccccccCCcc---- Q lcl|NC_015286. 345 T---GVDDTSSTLVGTLNGRIKVYVDPYSANVA------DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDT---- 411 (457) Q Consensus 345 ~---~~d~~~~~~~G~l~~~~~vy~D~y~~~~~------~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s---- 411 (457) . .........-++| .+++|+++...|... ++.++++|..++.+++-+= -.|.. ..-|+.. T Consensus 212 ~~~~~~~~~~~~~~~~i-~g~pv~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~i~~~~--~~~~~----~~~~~~~~~~~ 284 (320) T protein:vir:10 212 IESTYTDENSPFRAGRI-VSRPTILSDHVADGTTVGYMGDFRNVIWGQVGGLSFDVTD--QATLN----LGTPTEPNFVS 284 (320) T ss_pred ccccccCccccccCcee-eeeeeEecCCCCCCceEEEEeecceEEEEEecCeEEEEee--cceee----eccccccccch Confidence 0 0011111222344 467888887766421 2223444444433221000 00000 0001111 Q ss_pred -c---cceeeeeeeeee-eeccccc----cccCccc Q lcl|NC_015286. 412 -F---QPKIGFKTRYGM-VSNPFAQ----GLTQGSG 438 (457) Q Consensus 412 -~---qP~~g~~tRY~l-~~nP~~~----~~~~~~~ 438 (457) | |=.+=...|++. +.+|-+- +.....+ T Consensus 285 ~f~~~~~~~r~~~~~d~~v~~~~a~~~l~~~~ap~~ 320 (320) T protein:vir:10 285 LWQHNLVAVRVEAEYAFHNNDKDAFVKLTNVVTPDA 320 (320) T ss_pred hhhcCcEEEEEEEeeccEEecccceEEEEeccCCCC Confidence 1 112223356666 5565433 1122122 No 77 >protein:vir:3870 Length: 400 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680487;swissprot:trembl:q8ltc0;genbank:gi:22296527;interpro:IPR006444;uniprot:Q8LTC0;genbank:GeneID:951713 Probab=82.78 E-value=0.074 Score=26.78 Aligned_cols=316 Identities=13% Similarity=0.091 Sum_probs=125.9 Q ss_pred Cc-hHHHHHHhhHhhccccc-----ccccc-chhhhhhhhhccchHHHHHHHHHH---hhhhh--hccc-------cccc Q lcl|NC_015286. 1 MS-LQQLQEKWAPVLNHESL-----PEIED-THKRGVVAQLLENQEKAITEEASV---LNETL--QTTG-------YTGA 61 (457) Q Consensus 1 ~~-~~~l~~~w~~~l~~~~~-----~~i~~-~~~~~v~~~~~~n~~~~~~~~~~~---~~e~~--~~~g-------~~~~ 61 (457) +. .++-.+......+.+.. +.... ...+.....-.+...+........ ..... .... ..+. T Consensus 58 i~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (400) T protein:vir:38 58 IKDLEEKRDLYEAALKGNEQSSGKKPDHPEEHSYRDALNAYLHTRGRNTDGVNFEKTDVGTFAVLRAVPTDASDAVNAGV 137 (400) T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccchhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhcc Confidence 11 11111122221111111 00000 001111111111111111000000 00000 0000 0000 Q ss_pred cccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccc Q lcl|NC_015286. 62 STATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAY 141 (457) Q Consensus 62 st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~ 141 (457) .++.|.+.--.+..-.++++..+..+..+++.+.||++.++-+--++.. .+. -+. T Consensus 138 ~~~~gg~~vP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~--------------- 192 (400) T protein:vir:38 138 KAADAASTIPETISNTPQRELQTVVDLKPFTNVFQASTQKGTYPTVANA----TTK------MVT--------------- 192 (400) T ss_pred cccCCcccccHHHHHHHHHHHHhhhhhhhcceeEeccCcceEEEEEecC----CCc------ccc--------------- Confidence 1111221111111223444455667889999999999887754333311 000 000 Q ss_pred ccccccccccccccccccccccccccccccccccccchhhhhccCC-CCCCcccccceeEEEEEEEEeecccccceeeHH Q lcl|NC_015286. 142 DPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDD-SSSNTAFREMGFSIEKVTVTARARALKAEYSIE 220 (457) Q Consensus 142 ~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~-~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~E 220 (457) .+|.-.. ..++..|. .++..++.-+-...+|-| T Consensus 193 ---------------------------------------~~E~~~~~~~~~~~f~-------~i~~~~~k~~~~~~is~e 226 (400) T protein:vir:38 193 ---------------------------------------VAELEKNPAMAKPEFK-------PVNWSVETYRQALPVSQE 226 (400) T ss_pred ---------------------------------------ccccccccccccccce-------eeEeehhheeeehhhHHH Confidence 0000000 01122344 444455555556789999 Q ss_pred HHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHHHH Q lcl|NC_015286. 221 LAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERD 300 (457) Q Consensus 221 LAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~e 300 (457) |.+|- ..|.+++|.+-|+..|...+|+-|+...-+ ....|+..++ ....++. .... T Consensus 227 ll~ds----~~~~~~~i~~~l~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~----------~~~~~~~-~~~~ 282 (400) T protein:vir:38 227 SIDDS----AIDLVGLIAQNGQQIKVNTTNGAVATLLKG---------FTAKTISSVD----------DLKHINN-VDLD 282 (400) T ss_pred HHhhh----HHHHHHHHHHHHHHHHHHHHHHhhhhcccc---------ccccccccHH----------HHHHHHH-hhhh Confidence 99985 347888999999999999999988864322 1122222211 1111111 1111 Q ss_pred HHHHHHhcccCCccEEEEchhHHHHHhh----CCcceecccccccccccccccCCceEEEEecCceEEEEecccccc-cc Q lcl|NC_015286. 301 ANAIGQQTRRGKGNILICSADVASALGM----AGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANV-AD 375 (457) Q Consensus 301 an~i~~~T~rg~gn~~i~S~~va~~L~~----sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~-~~ 375 (457) . .+.+ .+|+|+.....|.. .|-.-+.|.. .....|+|. |++|++..+.|.. +. T Consensus 283 ~--------~~~a-~~v~~~~~~~~l~~lkd~~G~~i~~~~~------------~~~~~~~l~-G~pv~~~~~~~~~~~g 340 (400) T protein:vir:38 283 P--------AYSR-VIIASQSFYNFLDTVKDGNGRYLLQDSI------------LTPSGKSVL-GMPIAVVSDDTLGAAG 340 (400) T ss_pred h--------hhCc-EEEEcHHHHHHHHHhhccCCCeeeecCc------------CCCCccccc-cceeEEecccccCCCC Confidence 1 1233 45678888877765 1222122211 111234664 4666666554421 11 Q ss_pred cceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccc-cccCcccc Q lcl|NC_015286. 376 KHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQ-GLTQGSGA 439 (457) Q Consensus 376 ~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~-~~~~~~~~ 439 (457) ...+++|---. .+..... ....+...|-..|+..+-...|++. +.+|-+- .++-.+++ T Consensus 341 ~~~~~~gd~s~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~a~~~l~~~~~a 400 (400) T protein:vir:38 341 EAHAFLGDIKR-----AILFANR-ADFMVRWVDDQIYGQFLQAGMRFGVSVADEKAGYFLTYTPKA 400 (400) T ss_pred ceEEEEEeccc-----cEEEEee-cceEEEEecccccceeEEEEEEeccEEecccceEEEEeecCC Confidence 12233322100 0000000 0111223355666777778889988 6676532 22222222 No 78 >protein:vir:1239 Length: 274 # NCBI annotation: similar to phage B1 major head protein # Family: family:all:522 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510938;genbank:gi:17426272;genbank:GeneID:927376 Probab=82.59 E-value=0.076 Score=26.73 Aligned_cols=270 Identities=11% Similarity=0.026 Sum_probs=119.5 Q ss_pred cCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcc Q lcl|NC_015286. 114 ERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTA 193 (457) Q Consensus 114 ~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~ 193 (457) ..++ .+.-..-+.+|-.+.+=-..- ............+.. +... .|+......-. ....+|.+.++. ... T Consensus 1 ma~~-~T~l~d~iiPev~~~~v~~~~----~~~l~~~~~~~~d~~-l~g~-~G~tv~iP~~~--~ig~a~~~~~g~-~i~ 70 (274) T protein:vir:12 1 MAQG-LTKTSNQIIPEVLAPMMQAQL----EKKLRFASFAEVDST-LQGQ-PGDTLTFPAFV--YSGDAQVVAEGE-KIP 70 (274) T ss_pred CCcc-eeehhhhhchHHHHHHHHHHH----Hhhhhhcccceeccc-ccCC-CCCEEEEeeec--CCCccccccCCC-ccc Confidence 1110 011111222232111100000 000000000000000 0000 01100000000 112334343322 234 Q ss_pred cccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccce Q lcl|NC_015286. 194 FREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAG 273 (457) Q Consensus 194 f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~G 273 (457) ..++.. .+.+++.+-|+-.=+++=| ..+.+ +-|.-.+..+-++..|+.+++.+++..+.+...... .. T Consensus 71 ~~~lt~--~~~~~~i~~~~~~~~i~D~--~~~~~--~~d~~~~~~~q~~~~~a~~vd~~~l~~~~~a~~~~~------~~ 138 (274) T protein:vir:12 71 TDILET--KKREAKIRKIAKGTSITDE--ALLSG--YGDPQGEQVRQHGLAHANKVDNDVLEALMGAKLTVN------AD 138 (274) T ss_pred hhhccc--ceeeEEeeeecceeeecHH--HHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccc------cc Confidence 455554 3444444555433222221 12222 568889999999999999999999988865332211 11 Q ss_pred eEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCce Q lcl|NC_015286. 274 VFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSST 353 (457) Q Consensus 274 v~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~ 353 (457) .+ ..+-+-..+.++..+ -..+++++++|.|++.|.......|.+++++.+ ....+. T Consensus 139 a~----------~~d~i~dA~~~lgd~---------~~~~~~ivv~p~~~~~L~k~~~~~fv~~s~~g~-----~~~~~G 194 (274) T protein:vir:12 139 IT----------KLNGLQSAIDKFNDE---------DLEPMVLFINPLDAGKLRGDASTNFTRATELGD-----DIIVKG 194 (274) T ss_pred cc----------CHHHHHHHHHHhccc---------cccccEEEeCHHHHHHHHhhhhhhccccccccc-----cceecc Confidence 11 122222333444332 136789999999999988766556665544321 123344 Q ss_pred EEEEecCceEEEEecccccccccceEEEEEe-cCCCccceeEEcccccccccccc-CCccccceeeeeeeeee-eecccc Q lcl|NC_015286. 354 LVGTLNGRIKVYVDPYSANVADKHYYVAGYK-GTSPYDAGLFYCPYVPLQQVRAI-NPDTFQPKIGFKTRYGM-VSNPFA 430 (457) Q Consensus 354 ~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~K-G~~~~d~glfyaPYv~~~~~~~~-Dp~s~qP~~g~~tRY~l-~~nP~~ 430 (457) ..|++. +++||+|...|+ |-.+-++ |.-. |+. -.+ ..+.+. ||..++-.+-..-+||. ..||-- T Consensus 195 ~ig~~~-G~~Vi~s~~~p~-----~t~~l~~~gA~~-----~~~-~~~-~~vE~~Rd~~~~~d~i~~~~~y~~~~~~~~~ 261 (274) T protein:vir:12 195 AFGEAL-GAIIVRSNKLEA-----GTAILAKKGAVK-----LIL-KRD-FFLEVARDASTKTTALYSDKHYVAYLYDESK 261 (274) T ss_pred cceeec-CeeEEEeCCCCc-----ceEEEEecccee-----eee-cCC-ceeccccchhhcccEEEeeeEEEEEEEcCCc Confidence 688885 689999966552 2222222 2111 111 111 112222 99999999988899997 667642 Q ss_pred c-cccCcccccccccch Q lcl|NC_015286. 431 Q-GLTQGSGALTANTNR 446 (457) Q Consensus 431 ~-~~~~~~~~~~~~~n~ 446 (457) . .++-.++.+ .| T Consensus 262 vv~~t~~~~~~----~~ 274 (274) T protein:vir:12 262 AVKITKGSGSL----EM 274 (274) T ss_pred eEEEEcCCccc----cC Confidence 1 111111111 11 No 79 >protein:vir:94494 Length: 274 # NCBI annotation: ORF015 # Family: family:all:522 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240676;genbank:gi:66396348;genbank:GeneID:5133758 Probab=82.17 E-value=0.079 Score=26.62 Aligned_cols=271 Identities=11% Similarity=0.013 Sum_probs=119.7 Q ss_pred eeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccC Q lcl|NC_015286. 107 MRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALD 186 (457) Q Consensus 107 MRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg 186 (457) |= ++ .+....-+..|-.+.+=-... . ...........+.. +.. ..|.... ...--....+|.+. T Consensus 1 ma-------~~-~T~~~d~iiPev~~~~v~~~~---~-~~l~~~~~~~~d~~-l~g-~~G~tv~--iP~~~~~g~a~~~~ 64 (274) T protein:vir:94 1 MP-------QG-LTKTSDQIIPEVLAPMMQAQL---E-KKLRFASFAEVDST-LQG-QPGDTLT--FPAFVYSGDAQVVA 64 (274) T ss_pred CC-------cc-ceehhheechHHHHHHHHHhh---h-hhhhhcccceeccc-ccC-CCCCEEE--EeeecCCCcccccc Confidence 11 10 001111122222111100000 0 00000000000000 000 0011000 00000112334333 Q ss_pred CCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeec Q lcl|NC_015286. 187 DSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQ 266 (457) Q Consensus 187 ~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~ 266 (457) ++. .....++.+ .+.+++.+-|+-.=+++=| ..+.+ +-|.-.+..+-++..|+.+++.+++..|.+...... T Consensus 65 ~g~-~i~~~~lt~--~~~~~~i~~~~~~~~i~D~--~~~~~--~~dp~~~~~~~~a~a~a~~vd~~~~~~l~~a~~~~~- 136 (274) T protein:vir:94 65 EGE-KIPTDILET--KKREAKIRKIAKGTSITDE--ALLSG--YGDPQGEQVRQHGLAHANKVDNDVLEALMGAKLTVN- 136 (274) T ss_pred CCC-ccccccccc--ceeEEEeeeecceecccHH--HHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc- Confidence 222 234455544 4455555656532233322 22223 468888999999999999999999998865443211 Q ss_pred cccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccc Q lcl|NC_015286. 267 NNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTG 346 (457) Q Consensus 267 ~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~ 346 (457) ...++ .+-+-.++.++..+ -..+++++++|.+++.|.......|.++++.. T Consensus 137 -----~~~~~----------~d~i~dA~~~l~d~---------~~~~~~ivv~p~~~~~L~k~~~~~f~~~s~~g----- 187 (274) T protein:vir:94 137 -----ADITK----------LNGLQSAIDKFNDE---------DLEPMVLFVNPLDAGKLRGDASTNFTRATELG----- 187 (274) T ss_pred -----ccccC----------HHHHHHHHHHhhcc---------CCCceEEEeCHHHHHHHHhhhhhhccccCccc----- Confidence 11111 12233333444332 23678999999999998876545555443321 Q ss_pred cccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccc-cCCccccceeeeeeeeee- Q lcl|NC_015286. 347 VDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRA-INPDTFQPKIGFKTRYGM- 424 (457) Q Consensus 347 ~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~-~Dp~s~qP~~g~~tRY~l- 424 (457) .....+...|++. |++||+|...| +|-.+-++ -+.+-|.--.+ ..+.. -||..+.=.+-..-+||. T Consensus 188 ~~~~~~G~ig~~~-G~~Vi~s~~~p-----~~t~~l~~-----~gA~~~~~~~~-~~vE~~Rd~~~~~d~i~~~~~y~~~ 255 (274) T protein:vir:94 188 DDIIVKGAFGEAL-GAIIVRTNKLE-----AGTAILAK-----KGAVKLILKRD-FFLEVARDASTKTTALYSDKHYVAY 255 (274) T ss_pred ccceeccccceec-CeeEEEcCCCC-----cceEEEEe-----CcceEeeecCC-ceeccccchhhcccEEEEEEEEEEE Confidence 1123344578885 68999997655 23222222 11222211111 11222 289999999988999998 Q ss_pred eeccccc-cccCcccccccccch Q lcl|NC_015286. 425 VSNPFAQ-GLTQGSGALTANTNR 446 (457) Q Consensus 425 ~~nP~~~-~~~~~~~~~~~~~n~ 446 (457) ..||--. .++-..+.+ .| T Consensus 256 ~~~~~~vv~~t~~~~~~----~~ 274 (274) T protein:vir:94 256 LYDESKAVKITKGSGSL----EM 274 (274) T ss_pred EEcCCceEEEecCcccc----cC Confidence 6676311 111111111 11 No 80 >protein:vir:97433 Length: 274 # NCBI annotation: ORF014 # Family: family:all:522 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240749;genbank:gi:66396420;genbank:GeneID:5133789 Probab=82.17 E-value=0.079 Score=26.62 Aligned_cols=271 Identities=11% Similarity=0.013 Sum_probs=119.7 Q ss_pred eeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccC Q lcl|NC_015286. 107 MRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALD 186 (457) Q Consensus 107 MRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg 186 (457) |= ++ .+....-+..|-.+.+=-... . ...........+.. +.. ..|.... ...--....+|.+. T Consensus 1 ma-------~~-~T~~~d~iiPev~~~~v~~~~---~-~~l~~~~~~~~d~~-l~g-~~G~tv~--iP~~~~~g~a~~~~ 64 (274) T protein:vir:97 1 MP-------QG-LTKTSDQIIPEVLAPMMQAQL---E-KKLRFASFAEVDST-LQG-QPGDTLT--FPAFVYSGDAQVVA 64 (274) T ss_pred CC-------cc-ceehhheechHHHHHHHHHhh---h-hhhhhcccceeccc-ccC-CCCCEEE--EeeecCCCcccccc Confidence 11 10 001111122222111100000 0 00000000000000 000 0011000 00000112334333 Q ss_pred CCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeec Q lcl|NC_015286. 187 DSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQ 266 (457) Q Consensus 187 ~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~ 266 (457) ++. .....++.+ .+.+++.+-|+-.=+++=| ..+.+ +-|.-.+..+-++..|+.+++.+++..|.+...... T Consensus 65 ~g~-~i~~~~lt~--~~~~~~i~~~~~~~~i~D~--~~~~~--~~dp~~~~~~~~a~a~a~~vd~~~~~~l~~a~~~~~- 136 (274) T protein:vir:97 65 EGE-KIPTDILET--KKREAKIRKIAKGTSITDE--ALLSG--YGDPQGEQVRQHGLAHANKVDNDVLEALMGAKLTVN- 136 (274) T ss_pred CCC-ccccccccc--ceeEEEeeeecceecccHH--HHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc- Confidence 222 234455544 4455555656532233322 22223 468888999999999999999999998865443211 Q ss_pred cccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccc Q lcl|NC_015286. 267 NNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTG 346 (457) Q Consensus 267 ~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~ 346 (457) ...++ .+-+-.++.++..+ -..+++++++|.+++.|.......|.++++.. T Consensus 137 -----~~~~~----------~d~i~dA~~~l~d~---------~~~~~~ivv~p~~~~~L~k~~~~~f~~~s~~g----- 187 (274) T protein:vir:97 137 -----ADITK----------LNGLQSAIDKFNDE---------DLEPMVLFVNPLDAGKLRGDASTNFTRATELG----- 187 (274) T ss_pred -----ccccC----------HHHHHHHHHHhhcc---------CCCceEEEeCHHHHHHHHhhhhhhccccCccc----- Confidence 11111 12233333444332 23678999999999998876545555443321 Q ss_pred cccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEccccccccccc-cCCccccceeeeeeeeee- Q lcl|NC_015286. 347 VDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRA-INPDTFQPKIGFKTRYGM- 424 (457) Q Consensus 347 ~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~-~Dp~s~qP~~g~~tRY~l- 424 (457) .....+...|++. |++||+|...| +|-.+-++ -+.+-|.--.+ ..+.. -||..+.=.+-..-+||. T Consensus 188 ~~~~~~G~ig~~~-G~~Vi~s~~~p-----~~t~~l~~-----~gA~~~~~~~~-~~vE~~Rd~~~~~d~i~~~~~y~~~ 255 (274) T protein:vir:97 188 DDIIVKGAFGEAL-GAIIVRTNKLE-----AGTAILAK-----KGAVKLILKRD-FFLEVARDASTKTTALYSDKHYVAY 255 (274) T ss_pred ccceeccccceec-CeeEEEcCCCC-----cceEEEEe-----CcceEeeecCC-ceeccccchhhcccEEEEEEEEEEE Confidence 1123344578885 68999997655 23222222 11222211111 11222 289999999988999998 Q ss_pred eeccccc-cccCcccccccccch Q lcl|NC_015286. 425 VSNPFAQ-GLTQGSGALTANTNR 446 (457) Q Consensus 425 ~~nP~~~-~~~~~~~~~~~~~n~ 446 (457) ..||--. .++-..+.+ .| T Consensus 256 ~~~~~~vv~~t~~~~~~----~~ 274 (274) T protein:vir:97 256 LYDESKAVKITKGSGSL----EM 274 (274) T ss_pred EEcCCceEEEecCcccc----cC Confidence 6676311 111111111 11 No 81 >protein:vir:81070 Length: 390 # NCBI annotation: p09 # Family: family:all:585 # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285679;genbank:gi:148727187;genbank:GeneID:5247115 Probab=81.27 E-value=0.087 Score=26.39 Aligned_cols=319 Identities=13% Similarity=0.038 Sum_probs=119.0 Q ss_pred CchHHHHHHhhHh--------------------hccccccccccchhhhhhhhhccchHHHHHHHHHHhhhhh------- Q lcl|NC_015286. 1 MSLQQLQEKWAPV--------------------LNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETL------- 53 (457) Q Consensus 1 ~~~~~l~~~w~~~--------------------l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~------- 53 (457) ++.+ ..++-.-+ ++....+ ..... +......-+ .+......+...+.. T Consensus 32 ~~~e-~~~~~~~l~~e~~~l~~~i~~~e~~~~~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 106 (390) T protein:vir:81 32 LNAS-ARSKVDELFATVGNLSAEVQAARQRVAELEGNGAG-GDVQH-VSVGDMFVA--SEQFQASAGRWNDRSARATMNI 106 (390) T ss_pred cCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccc-ccchhhhhh--hHHHHHHHHHHhhhhhhhhhHH Confidence 1100 00111000 0000000 00000 000000000 000000000000000 Q ss_pred -hcccccccccccccccccccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccc Q lcl|NC_015286. 54 -QTTGYTGASTATGPVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPN 131 (457) Q Consensus 54 -~~~g~~~~st~tg~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~ 131 (457) ...-.....+++.+-....|.+ -.++++..+..+..+++.+.||++++.-+.-.. +.... + T Consensus 107 ~~~~~~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~-------a------ 169 (390) T protein:vir:81 107 KAALNTASTDAAGSAGALTTPNRLPGFITPPDARLTVRDLIGSGRTDSALIEYVQET----GFVNN-------A------ 169 (390) T ss_pred HHHHHhhccccccCCcceechhhhHHHHHHHhhhhhhhhhcceeeccCCceEEEEEe----cCCcc-------e------ Confidence 0000000111111111122222 225555556677889999999998774332111 00000 0 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecc Q lcl|NC_015286. 132 AGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARAR 211 (457) Q Consensus 132 t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSR 211 (457) . ..++++... ..+..|.++.+++.|.. T Consensus 170 -~--------------------------------------------~v~Eg~~~~--~~~~~~~~i~~~~~k~~------ 196 (390) T protein:vir:81 170 -A--------------------------------------------IVAEGALKP--ESSLKFAKKTDTTHVIA------ 196 (390) T ss_pred -e--------------------------------------------eecCCcccc--cccceeeEEEEeeeEEE------ Confidence 0 000000000 11223555555555444 Q ss_pred cccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeecc------ccchhH Q lcl|NC_015286. 212 ALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDV------DSNGRW 285 (457) Q Consensus 212 aLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~------~~~grw 285 (457) -...+|-||.+|- . +.++.|.+-|+..|...+|+-||.- .-.+-...|++.... ...+-. T Consensus 197 -~~~~is~ell~d~--~---~~~~~i~~~l~~~~~~~~d~a~l~G--------~g~~~~~~Gi~~~~~~~~~~~~~~~~~ 262 (390) T protein:vir:81 197 -HTMKATRQILSDA--P---QLASYMNNRLIRGLKVKEDAEILRG--------TGANDGLLGLIPQATTYAAPTTIAGAT 262 (390) T ss_pred -EeehhhHHHHHhH--H---HHHHHHHHHHHHHHHHHHHHHHHhc--------CCCCCcccceeecccccccccccccch Confidence 4556799999984 2 4788999999999999999988753 111112234432211 111222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEE Q lcl|NC_015286. 286 SVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVY 365 (457) Q Consensus 286 ~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy 365 (457) ..+....+++++. ...+..+.+|++|.....|.. +. ..+|. ....+.. ....++| .|++|+ T Consensus 263 ~~~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~l~~---lk---d~~G~--~l~~~~~-~~~~~~l-~G~pv~ 323 (390) T protein:vir:81 263 RVDQLRLAMLQAS---------LAEYNPSGIVINPIDWAAIEL---AK---DANNQ--YLIGNAR-GTLTPTL-WGLPVV 323 (390) T ss_pred hHHHHHHHHHhhc---------cccCCCCEEEEcHHHHHHHHH---hh---cCCCc--eeecCcc-cccCcee-cceeeE Confidence 3333444444332 233455678899999887765 21 11111 1111111 1112455 367899 Q ss_pred EecccccccccceEEEEEecCCCccceeEEccccccccccccC-C---ccccceeeeeeeeee-eeccccccccCccccc Q lcl|NC_015286. 366 VDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAIN-P---DTFQPKIGFKTRYGM-VSNPFAQGLTQGSGAL 440 (457) Q Consensus 366 ~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~D-p---~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~ 440 (457) +....|.+ -+++|---. .++...- ....+...+ + .+-+=.+=...|++. +.+|-+-.. T Consensus 324 ~~~~~p~~----~~~~gd~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~~v~~r~~~r~d~~v~~~~a~v~------- 386 (390) T protein:vir:81 324 ATQAMAPG----EFLVGAFDL-----AAQIFDQ-WDARVEIGYVGEDFQRNMITVLAEERLALVVYRPEALIS------- 386 (390) T ss_pred EcCCCCCC----cEEEEehhc-----eEEEEEe-cceEEEEecccchhhcCcEEEEEEEeeccEEecccceEE------- Confidence 88877632 233332100 0000000 000000000 0 111223334556666 445442211 Q ss_pred ccccchheeeeeee Q lcl|NC_015286. 441 TANTNRYYRRVQVA 454 (457) Q Consensus 441 ~~~~n~~~~r~~~~ 454 (457) +.++ T Consensus 387 ----------~t~a 390 (390) T protein:vir:81 387 ----------GSFA 390 (390) T ss_pred ----------EEeC Confidence 1111 No 82 >protein:vir:80684 Length: 315 # NCBI annotation: gp6 # Family: family:all:966 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285582;genbank:gi:148727088;genbank:GeneID:5247055 Probab=79.48 E-value=0.1 Score=25.97 Aligned_cols=286 Identities=12% Similarity=0.005 Sum_probs=117.4 Q ss_pred cccccccccccccccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccccc Q lcl|NC_015286. 58 YTGASTATGPVAGFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSG 136 (457) Q Consensus 58 ~~~~st~tg~i~~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG 136 (457) |.-.++++|... .-+.+. .+++++..+.+...++-|-||.+.. +-|-.. .++ .+|- T Consensus 1 Ma~~~~~~gg~~-vP~~~~~~ii~~l~~~s~i~~l~~~i~~~~~~-~~ip~~------~~~-----~~a~---------- 57 (315) T protein:vir:80 1 MADDFLSAGKLE-LPGSMIGAVRDRAIDSGVLAKLSPEQPTIFGP-VKGAVF------SGV-----PRAK---------- 57 (315) T ss_pred CCCCcCCcCceE-cchHHHHHHHHHHHhhchhhhhcceeecCCCc-eEEEEE------eCC-----cceE---------- Confidence 333333444332 222232 2666666788888899999987542 222211 110 0000 Q ss_pred cccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccce Q lcl|NC_015286. 137 GPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAE 216 (457) Q Consensus 137 ~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAE 216 (457) ..+++|... .++..|.++.+...|. +-... T Consensus 58 -----------------------------------------wv~Eg~~~~--~s~~~f~~v~l~~~kl-------~~~~~ 87 (315) T protein:vir:80 58 -----------------------------------------IVGEGEVKP--SASVDVSAFTAQPIKV-------VTQQR 87 (315) T ss_pred -----------------------------------------EeeCCcccc--ccccceeeeEeeeeeE-------Eeeeh Confidence 001111111 1123344444444444 34456 Q ss_pred eeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEee-------ccccchhHHHHH Q lcl|NC_015286. 217 YSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDL-------DVDSNGRWSVEK 289 (457) Q Consensus 217 YT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl-------~~~~~grw~~e~ 289 (457) .|-||.+|-. .|+..+|+++|..++...|.|.+=+.++.-...++ +....|+... ....+.-| .- T Consensus 88 iS~ell~~s~----~~~~~~l~~~i~~~la~ai~~~~d~a~~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~d 159 (315) T protein:vir:80 88 VSDEFMWADA----DYRLGVLQDLISPALGASIGRAVDLIAFHGIDPAT--GKAASAVHTSLNKTKNIVDATDSAT--AD 159 (315) T ss_pred hhHHHhhcCc----hhHHHHHHHHHHHHHHHHHHHHHhhheeeccCCCC--Cccccccccccccccceeeccccch--HH Confidence 8999988844 46777777777777777777766555542211111 1111111111 00011111 11 Q ss_pred HHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecc Q lcl|NC_015286. 290 FKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPY 369 (457) Q Consensus 290 ~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y 369 (457) +..++.++... .....+-.|++++....|... ...-..+........+ ....-.|+|. +++|+++.+ T Consensus 160 ~~~~~~~~~~~--------~~~~~~~~imn~~~~~~L~~l---~~~~g~~~~g~~~~~~-~~~g~~~tl~-G~PV~~~~~ 226 (315) T protein:vir:80 160 LVKAVGLIAGA--------GLQVPNGVALDPAFSFALSTE---VYPKGSPLAGQPMYPA-AGFAGLDNWR-GLNVGASST 226 (315) T ss_pred HHHHHHHHhhc--------cCccceEEEEcHHHHHHHHHH---hhccCCcccccccccc-cccCCCceec-ceeeEecCc Confidence 22232333211 122334578999998888652 1111111000000000 0111135775 488998888 Q ss_pred ccccc-------------ccceEEEEEecCCCccceeEEccccccccccccCCcc-ccc-eeee--eeeeee-eeccccc Q lcl|NC_015286. 370 SANVA-------------DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDT-FQP-KIGF--KTRYGM-VSNPFAQ 431 (457) Q Consensus 370 ~~~~~-------------~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s-~qP-~~g~--~tRY~l-~~nP~~~ 431 (457) .|... ++.++.+|+.+... +-..+|..-+.. +.+ ||. .++| ..|+|. +.+|-+- T Consensus 227 ~~~~~~~~~~~~~~~~~GDfs~~~~g~~~~~~----i~i~~~~~~~~~----~~~~~~~~~v~~r~~~r~~~~v~~~~a~ 298 (315) T protein:vir:80 227 VSGAPEMSPASGVKAIVGDFSRVHWGFQRNFP----IELIEYGDPDQT----GRDLKGHNEVMVRAEAVLYVAIESLDSF 298 (315) T ss_pred CCcccccccccccEEEEeecccEEEEEecCee----EEEeccccccCc----ccchhhcCcEEEEEEEEecceeecccce Confidence 76432 12223333333222 222233110000 011 221 1333 356666 6676422 Q ss_pred cc-cCc--ccccccccc Q lcl|NC_015286. 432 GL-TQG--SGALTANTN 445 (457) Q Consensus 432 ~~-~~~--~~~~~~~~n 445 (457) .. +.. +-.-..+.| T Consensus 299 ~~l~~~~a~~~~~~~~~ 315 (315) T protein:vir:80 299 AVVKEKAAPKPNPPAEN 315 (315) T ss_pred EEEeeccCCCCCCCCCC Confidence 11 100 111122333 No 83 >protein:vir:3364 Length: 347 # NCBI annotation: major capsid protein 10A # Family: family:all:975 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523335;genbank:gi:17570826;genbank:GeneID:927448 Probab=79.05 E-value=0.11 Score=25.88 Aligned_cols=311 Identities=15% Similarity=0.059 Sum_probs=133.6 Q ss_pred CC-CcceeeeEeeeeecccCCcccCccccccc-----ccccccccccccccccccccccccccccccccccccccccccc Q lcl|NC_015286. 97 MT-GPTGLIFAMRTNYGAERDPAASGYDEAFF-----NEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQ 170 (457) Q Consensus 97 mT-GPTGLIFAMRsrY~~~~g~~~~~~~EAlf-----nEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~ 170 (457) |- .|+|.--+-|..++.. ++..-|+| .|..+.|.-.+-..... ......+.+..-++.....+... T Consensus 1 ~~~~~~~~~~~t~~g~~~~-----~~~~~al~ie~~~g~V~~~f~~~s~~~~~v---~~r~~~~G~sv~i~~iG~~t~~~ 72 (347) T protein:vir:33 1 MANIQGGQQIGTNQGKGQS-----AADKLALFLKVFGGEVLTAFARTSVTMPRH---MLRSIASGKSAQFPVIGRTKAAY 72 (347) T ss_pred CCCCccCcccccccccCCc-----ccchHHHHHHHHHHHHHHHHHHHHhhhhhh---ccccccccceeEeeeccceeeee Confidence 32 3333333334333311 12223333 23333332211100000 00111111111111111111111 Q ss_pred cccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhh Q lcl|NC_015286. 171 TADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEIN 250 (457) Q Consensus 171 ~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEIN 250 (457) +. .++.+.....+....|+-++||++- -+...|+-.-+.++ | .|-..|+..=....++..++ T Consensus 73 ~~--------~g~~l~~~~~~~~~~e~~ltiD~~~--------y~~~~VddiD~~q~-~-~D~~~~~~~~~g~aLA~~~D 134 (347) T protein:vir:33 73 LK--------PGENLDDKRKDIKHTEKVIHIDGLL--------TADVLIYDIEDAMN-H-YDVRAEYTAQLGESLAMAAD 134 (347) T ss_pred ec--------CCCCCCCCCCCCccceEEEEechhh--------hhhHHHhhHHHHhc-C-CchhHHHHHHHHHHHHHHHH Confidence 11 1122211111235678888888753 34455666666666 4 78888999999999999999 Q ss_pred HHHHhhhhheeee-----eeccccccceeEeeccccch-hHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccEEEEchhHH Q lcl|NC_015286. 251 REVVRTIYTNAVK-----GAQNNTATAGVFDLDVDSNG-RWSVEKFKGLLFQIERDANAIGQQTR-RGKGNILICSADVA 323 (457) Q Consensus 251 ReIi~~l~tvA~r-----gk~~~v~~~Gv~Dl~~~~~g-rw~~e~~k~l~~qi~~ean~i~~~T~-rg~gn~~i~S~~va 323 (457) +-|+..|...... +....+...+.+.....+.| .|..+..-..+|.-..++.+.--+-- -=.|.|+|++|+.- T Consensus 135 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~d~~~~a~~i~~~i~~a~~~Lde~~VP~~gR~~vv~P~~y 214 (347) T protein:vir:33 135 GAVLAELAGLVNLPDGSNENIEGLGKPTVLTLVKPTTGSLTDPVELGKAIIAQLTIARASLTKNYVPAADRTFYTTPDNY 214 (347) T ss_pred HHHHHHHHHhhhhhcccccccccccccccccccccccccccchhhhHHHHHHHHHHHHHHHhhcCCCccCcEEEeCHHHH Confidence 9998776432211 11111111222222121211 12222222233444455444433322 23589999999999 Q ss_pred HHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEE---EEe------------cCCC Q lcl|NC_015286. 324 SALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVA---GYK------------GTSP 388 (457) Q Consensus 324 ~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~v---G~K------------G~~~ 388 (457) ++|-...-+ ..... .+.+......+|.+ .+++||.-+..|+++..+.-+- |-+ +.-- T Consensus 215 ~~Ll~~~~~--~~~d~-----~~~~~~~~G~V~~i-~G~~V~~Sn~lp~~~~~~~~~~~~ag~~~~~~~~~~~~~~~a~~ 286 (347) T protein:vir:33 215 SAILAALMP--NAANY-----QALLDPERGTIRNV-MGFEVVEVPHLTAGGAGDTREDAPADQKHAFPATSSTTVKVALD 286 (347) T ss_pred HHHhccccc--ccccc-----ccccccccceeEEE-eceeEEEecccccCccccccccccccccccccCCcccceecccc Confidence 887654322 21111 11234455678888 6799999887775443222111 111 0000 Q ss_pred ccceeEEccccc----cccc---cccCCccccceeeeeeeeee-eeccccccccCccccccc Q lcl|NC_015286. 389 YDAGLFYCPYVP----LQQV---RAINPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGALTA 442 (457) Q Consensus 389 ~d~glfyaPYv~----~~~~---~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~~~ 442 (457) -..||||.|=.. ++++ +..|+++|-=.|=-+..||- +.+|-.-..= +--++.. T Consensus 287 ~~~gl~~h~~A~g~v~~~~~~~e~~r~~~~~~d~i~~~~~~G~~vlrP~~av~i-~~~~~~~ 347 (347) T protein:vir:33 287 NVVGLFQHRSAVGTVKLKDLALERARRANYQADQIIAKYAMGHGGLRPEAAGAI-VLPKVSE 347 (347) T ss_pred ceeeeeecchhheeeeeeceeeeeccchhhhhHhhhhhhhcCCceecccceEEE-ecCCCCC Confidence 113455544221 2221 12366666655555556665 5566532110 0000000 No 84 >protein:vir:96762 Length: 632 # NCBI annotation: putative phage-related protein # Family: family:all:21 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039818;genbank:gi:126010917;genbank:GeneID:5076272 Probab=78.67 E-value=0.11 Score=25.80 Aligned_cols=318 Identities=13% Similarity=0.108 Sum_probs=125.8 Q ss_pred CchHH---HHHHhhHhhccccccccccchh-----hhhhhh-------hccchHHHH----HHHHHHhhhhhhc--cc-- Q lcl|NC_015286. 1 MSLQQ---LQEKWAPVLNHESLPEIEDTHK-----RGVVAQ-------LLENQEKAI----TEEASVLNETLQT--TG-- 57 (457) Q Consensus 1 ~~~~~---l~~~w~~~l~~~~~~~i~~~~~-----~~v~~~-------~~~n~~~~~----~~~~~~~~e~~~~--~g-- 57 (457) |..+. .....+. +....+++..... +..... -+.++.... .+...-+.+..+. .| T Consensus 269 l~~~~~a~~~~~~a~--~~~~~~~~~~~~~i~~~~re~~~~~l~rai~a~a~~~~~~a~~~~e~a~~~a~~~G~~arg~~ 346 (632) T protein:vir:96 269 MNPGQPGNFEKPGAG--DLPGKPAIHSARDLGIQHKELQQYSLMRAINAAATGDWSKAGFEREVSLAIADASGKEARGFY 346 (632) T ss_pred Hhhhhhhhhhhhhhh--hhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhccchhhhhhhhHHHHHHHHhhhhhhhhhh Confidence 21111 1111221 1111222222111 111000 011111000 0000001111000 01 Q ss_pred ----------cccccccccccccccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccc Q lcl|NC_015286. 58 ----------YTGASTATGPVAGFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAF 126 (457) Q Consensus 58 ----------~~~~st~tg~i~~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAl 126 (457) ....++++|...-....+- .++.+..|..|...+ |++.+++.+|-+ + +..+.++. ++ T Consensus 347 ~~~~~l~~ra~~~~t~~~gg~lvp~~~~~~~iie~lr~~s~i~~l-~~~~~~~~~g~~---~--ip~~~~~~-----~a- 414 (632) T protein:vir:96 347 MPHEVLVQRQLEKKTAGKGGELVATELLSEEFIDILRNKAIIGQM-GARMLPGLVGDV---D--IPKKTSGA-----NF- 414 (632) T ss_pred hhHHHHHHhhhhcccccccccccccccchHHHHHHHhhcchhhhh-cceEeecCCcce---E--EEEEeCCc-----ee- Confidence 0111111221111111111 234444466777776 666666655431 1 11111100 00 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEE Q lcl|NC_015286. 127 FNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTV 206 (457) Q Consensus 127 fnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tV 206 (457) +. .+| +..+++-..++++++. T Consensus 415 --------------------------------------------~w--------v~E-------~~~~~~s~~~f~~i~l 435 (632) T protein:vir:96 415 --------------------------------------------YW--------IGE-------DEDVQDSDFDFTTLSF 435 (632) T ss_pred --------------------------------------------Ee--------ecC-------CccccccccceeeEEe Confidence 00 001 0123333445577777 Q ss_pred EeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec------cc Q lcl|NC_015286. 207 TARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD------VD 280 (457) Q Consensus 207 tAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~------~~ 280 (457) .+|.=+-...+|-||..| -++|.|++|.+-|...|...+++.+|.--= + +-...|++... .+ T Consensus 436 ~~~k~~~~v~iS~ell~d----s~~~~~~~i~~~l~~a~~~~~d~a~l~G~G-~-------~~~p~Gi~~~~~~~~~~~~ 503 (632) T protein:vir:96 436 SPKTIAGAVPVTRKLRKQ----SSIHVENLIREDLIEGIGVALDLAMLTGTG-L-------ANDPVGLLNMTGVPALTYP 503 (632) T ss_pred eeeEEEEehhhHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHhhcccC-C-------CCccceeeecccccceecc Confidence 777666677788888776 257899999999999999999999986310 0 01123443221 11 Q ss_pred cch-hHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEec Q lcl|NC_015286. 281 SNG-RWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLN 359 (457) Q Consensus 281 ~~g-rw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~ 359 (457) ..+ -| +....|...| ............|+++.....|...-..+ .+| .... + -|+|+ T Consensus 504 ~~~~~~--~~i~~~~~~i-------~~~~~~~~~~~~~~~~~~~~~l~~~~l~d----~~G--~~i~---~----~~~l~ 561 (632) T protein:vir:96 504 AGGVDW--ASVVDMETKI-------STFNADAGRLAYLTSVTQRGAAKKAQVFD----NTG--ERIW---Q----NNEVN 561 (632) T ss_pred cccCCH--HHHHHHHHHH-------hhcccccCccEEEEchhHHHHHHHHhccC----CCC--ceee---c----CCeec Confidence 111 12 1222232222 11122233445678888776666522211 111 1111 0 14664 Q ss_pred CceEEEEeccccccc----ccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eecccccccc Q lcl|NC_015286. 360 GRIKVYVDPYSANVA----DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGLT 434 (457) Q Consensus 360 ~~~~vy~D~y~~~~~----~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~ 434 (457) +++|++..+.|.+. ++..+++|.-|...+ -..||. +..+.|=.+=...|+++ +.+|-.-..- T Consensus 562 -G~pv~~s~~ip~~~~~~gd~s~~~i~~~~~~~i----~~~~~~--------~~~~~~v~~~~~~~~d~~v~~~~af~~~ 628 (632) T protein:vir:96 562 -GYRAEASNQIPADTWIFGDWSQIVIAMWGVLDL----KVDPYT--------KAASDGLVLRVFQDVDAGVRRKEAFCIA 628 (632) T ss_pred -ccceEeccccccCcEEEeecceEEEEEecceEE----EEcccc--------ccccCceEEEEEeecCceeechhhhhhe Confidence 68888887766321 111222222222211 112321 22334444445677777 5566433333 Q ss_pred Cccc Q lcl|NC_015286. 435 QGSG 438 (457) Q Consensus 435 ~~~~ 438 (457) ...+ T Consensus 629 k~~A 632 (632) T protein:vir:96 629 KKGA 632 (632) T ss_pred eecC Confidence 2223 No 85 >protein:vir:8187 Length: 311 # NCBI annotation: gp7 # Family: family:all:966 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817980;genbank:gi:29566414;genbank:GeneID:2700968 Probab=78.16 E-value=0.12 Score=25.69 Aligned_cols=286 Identities=12% Similarity=0.108 Sum_probs=116.2 Q ss_pred cccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccc Q lcl|NC_015286. 60 GASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPG 139 (457) Q Consensus 60 ~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~ 139 (457) .-.+++|...--....-.+++++.+..+..+++-+-||++..-- + .++. ++ .+|- T Consensus 1 mat~~~gg~lvP~~~~~~ii~~~~~~s~i~~~~~~i~~~~~~~~-~---p~~~---~~-----~~a~------------- 55 (311) T protein:vir:81 1 MVALATGTFQLPKHLVPGVWQKAQGQSVLARLSMAEPQEFGEQQ-Y---MTLT---AP-----PRGE------------- 55 (311) T ss_pred CceecCCceEcchhHHHHHHHHHHhcchhhhhcceeecCCCceE-E---EEEe---CC-----ceeE------------- Confidence 22333343322222223366667788889999999998764311 1 1111 10 0000 Q ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeH Q lcl|NC_015286. 140 AYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSI 219 (457) Q Consensus 140 ~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ 219 (457) ..+++| .+++...++++++..+|.=+-....|- T Consensus 56 --------------------------------------wv~Eg~---------~~~~~~~~f~~v~l~~~kl~~~~~iS~ 88 (311) T protein:vir:81 56 --------------------------------------VVGEGA---------QKSESTATFAPVTAIPRKVQVTQRFSQ 88 (311) T ss_pred --------------------------------------EeecCc---------ccccccceeeEEEEeeEEEEEeehhhH Confidence 001111 122222333444444444444457899 Q ss_pred HHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeec-ccc-----ccceeEeeccccchhHHHHHHHHH Q lcl|NC_015286. 220 ELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQ-NNT-----ATAGVFDLDVDSNGRWSVEKFKGL 293 (457) Q Consensus 220 ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~-~~v-----~~~Gv~Dl~~~~~grw~~e~~k~l 293 (457) ||.|+--. ..++-+++|.+-|+..|+..|+.-++.-.- +.-++. .++ .+..+..+.... .+..+. T Consensus 89 ell~~~~d-~~~~l~~~i~~~la~ai~~~~d~a~l~G~~--~~~~~~~~gi~~~~~~~~~~~~~~~~~--~~~~~~---- 159 (311) T protein:vir:81 89 EVKWADES-RQLGVLQTMADLSGVALGRALDLIGIHGIN--PLTGAALSGSPAKILDTTNIVELTTGT--SATPDL---- 159 (311) T ss_pred HHhhcCcc-cHHHHHHHHHHHHHHHHHHHHHHhhhcccc--CCCCcccccccccccccceeeeecccc--cchHHH---- Confidence 99875332 234567778888888888888887775420 111110 011 111122221111 111110 Q ss_pred HHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccc Q lcl|NC_015286. 294 LFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANV 373 (457) Q Consensus 294 ~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~ 373 (457) -|.+....+ ...++..+-+|+++.....|.. |+ ..+|.--+ .+.......|+|.| ++|+++.+.|.+ T Consensus 160 --~i~~~~~~~--~~~~~~~~~~vmn~~~~~~l~~---lk---d~~G~~l~--~~~~~~~~~~tl~G-~Pv~~~~~i~~~ 226 (311) T protein:vir:81 160 --AVEAAVGLV--LGDNLSPDGVALDNTFSFMLAT---QR---DSQGRKLY--PELGFGTDVASFAG-LNAAVSDTVRGG 226 (311) T ss_pred --HHHHHHHHh--hhcCCCceEEEEcHHHHHHHHh---hh---ccCCCeee--cCccccCCCceecc-eeEEeccccccc Confidence 012222222 2345677778889988888764 21 11111111 01111122467754 788887665521 Q ss_pred ccc--ceEEEEEecCCCc-----c-ceeEEcccccccc--ccccCCcc----ccc-eeee--eeeeee-eeccccc-ccc Q lcl|NC_015286. 374 ADK--HYYVAGYKGTSPY-----D-AGLFYCPYVPLQQ--VRAINPDT----FQP-KIGF--KTRYGM-VSNPFAQ-GLT 434 (457) Q Consensus 374 ~~~--dY~~vG~KG~~~~-----d-~glfyaPYv~~~~--~~~~Dp~s----~qP-~~g~--~tRY~l-~~nP~~~-~~~ 434 (457) -.. +=+.+...+.... | +.+++...-+... .+-.|+.. ||- .++| ..|+|. +.+|-+- .++ T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~gDfs~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~r~d~~v~~~~a~~~l~ 306 (311) T protein:vir:81 227 PEAVTASTGVYRTTNPNVKAIAGDFSAFRWGVQVSIPLELIEFGDPDGLGDLKRQNQIAIRAEVVYGIGIMSTDAFAVVR 306 (311) T ss_pred ccccccccchhcccCCccEEEEEecccEEEEEeccceEEEeccCCCCcchhhhhcCcEEEEEEEEeccEeecccceEEEE Confidence 100 0000000000000 1 1122222211111 11112221 222 1334 367776 6777421 111 Q ss_pred Ccccc Q lcl|NC_015286. 435 QGSGA 439 (457) Q Consensus 435 ~~~~~ 439 (457) ....+ T Consensus 307 ~a~~~ 311 (311) T protein:vir:81 307 DADES 311 (311) T ss_pred eeccC Confidence 11111 No 86 >protein:vir:485 Length: 407 # NCBI annotation: putative major capsid protein # Family: family:all:21 # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543092;swissprot:trembl:q8w627;genbank:gi:18249904;uniprot:Q8W627;genbank:GeneID:929693 Probab=77.12 E-value=0.13 Score=25.48 Aligned_cols=333 Identities=12% Similarity=0.169 Sum_probs=123.4 Q ss_pred CchHHHHHHhhHhhc----------------------------ccc--ccccccchhhhhhhhhccchHHHHHH-HHHHh Q lcl|NC_015286. 1 MSLQQLQEKWAPVLN----------------------------HES--LPEIEDTHKRGVVAQLLENQEKAITE-EASVL 49 (457) Q Consensus 1 ~~~~~l~~~w~~~l~----------------------------~~~--~~~i~~~~~~~v~~~~~~n~~~~~~~-~~~~~ 49 (457) =..+++.+++.-+-. +.+ ..+....+|+.+...|...+...+++ +.+.+ T Consensus 27 ~~~~~~e~~~~~l~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~~l~~g~~~~~~~~e~~a~ 106 (407) T protein:vir:48 27 KRIDAIEQEKGKLAGEVETLNGKLAELENLKSDLEAELAEVKRPAGGTQNKVASEHKEAFIGFMRKGREDGLRELERKAL 106 (407) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHhccchhhhhHHHHHhh Confidence 000111111111100 000 00111112222222222211112211 11111 Q ss_pred hhhhhcccccccccccccc---ccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccc Q lcl|NC_015286. 50 NETLQTTGYTGASTATGPV---AGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAF 126 (457) Q Consensus 50 ~e~~~~~g~~~~st~tg~i---~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAl 126 (457) ++. +.++|.+ ..+.+.++.+.| ...+..+++.+-||+++..-++=.. .++. ..+ T Consensus 107 ~~~---------t~~~gG~~iP~~~~~~I~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~-----a~~ 163 (407) T protein:vir:48 107 QVG---------NDEDGGYAIPEELDRTILTLLK---DEVVMRQEATVITLGGSDYKKLVNL------GGTT-----SGW 163 (407) T ss_pred hcc---------cCCCCcccccHhHHHHHHHHHH---hhhhhhhhceeeecCCCceEEEEec------CCcc-----eee Confidence 111 1111111 123344555555 4556677888889888754443110 0000 000 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEE Q lcl|NC_015286. 127 FNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTV 206 (457) Q Consensus 127 fnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tV 206 (457) .++.+...+ +....|.+..|.+.|. T Consensus 164 ----------------------------------------------------v~E~~~~~~-~~~~~f~~i~~~~~k~-- 188 (407) T protein:vir:48 164 ----------------------------------------------------VGETDARPE-TATSKLGLIEPFMGEI-- 188 (407) T ss_pred ----------------------------------------------------ecccccccc-cccccceeEEeeeeee-- Confidence 000000000 1112355555544444 Q ss_pred EeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhh--------hhheeeeeeccccccceeEe-e Q lcl|NC_015286. 207 TARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRT--------IYTNAVKGAQNNTATAGVFD-L 277 (457) Q Consensus 207 tAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~--------l~tvA~rgk~~~v~~~Gv~D-l 277 (457) +-...+|-||.+|-. +|.+++|.+-|+..|...+++-||.- |++.+.......+...|... + T Consensus 189 -----~~~~~iS~ell~ds~----~~l~~~i~~~l~~~i~~~~~~a~l~G~G~~~p~Gil~~~~~~~~~~~~~~~~~~~~ 259 (407) T protein:vir:48 189 -----YGNPQATQKMLDDAF----FNVEDWINSELALEFAEQEEIAFTSGDGSKKPKGFLAYESTDEDDKTRAFGKLQHI 259 (407) T ss_pred -----EeehhhHHHHHhcch----HHHHHHHHHHHHHHHHHHHHhhhhccCCCCccceeeeccccccccccccccccccc Confidence 444579999999843 57899999999999999999988752 11111111111110000000 0 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEE Q lcl|NC_015286. 278 DVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGT 357 (457) Q Consensus 278 ~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~ 357 (457) ..-..+.-..+....|.+.+... -+..+ .+|+++.....|.. |. ..+|.-- ...+.+. ...++ T Consensus 260 ~~~~~~~~~~d~i~~l~~~l~~~--------~~~~a-~~v~n~~~~~~L~~---lk---D~~Gr~l-~~~~~~~-g~~~~ 322 (407) T protein:vir:48 260 ASGAASGVTADAIIKLIYTLRKA--------HRSGA-KFMMNNSSLFAIRL---LK---DNDGNYL-WRPGIEL-GQPSS 322 (407) T ss_pred ccccccccChHHHHHHHHhhchh--------hhcCC-EEEEcHHHHHHHHH---hh---ccCCcee-eccCcCC-CCCce Confidence 00000110111122333333211 22233 35789988877765 21 1111100 0111111 11256 Q ss_pred ecCceEEEEecccccccccce-EEEEEecCCCccceeEEccccccccccccCCccccceeeee--eeeee-eeccccccc Q lcl|NC_015286. 358 LNGRIKVYVDPYSANVADKHY-YVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFK--TRYGM-VSNPFAQGL 433 (457) Q Consensus 358 l~~~~~vy~D~y~~~~~~~dY-~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~--tRY~l-~~nP~~~~~ 433 (457) |. +++|+++.+.|....... +++| +-. ..++...-..... ..||-.-+..++|. .|++. +.+|-+-.. T Consensus 323 l~-G~PV~~~~~~p~~~~~~~~i~~G---d~~--~~~~i~~~~~~~i--~~d~~~~~~~~~~~~~~r~d~~v~~~~a~~~ 394 (407) T protein:vir:48 323 LA-GYGIVENEQMPDIAADAKAIAFG---NFK--RGYTIVDRIGTRI--LRDPYTNKPFVGFYTTKRTGGMLVDSQAIKL 394 (407) T ss_pred ec-ceeeEEecCcCCccCCccEEEEE---ecc--ccEEEEEeeceEE--EeeccccCCcEEEEEEEEeccEEecccceEE Confidence 65 578998887764332222 3323 110 0000000000000 12443334444544 48887 677763311 Q ss_pred -cCcccccccccc Q lcl|NC_015286. 434 -TQGSGALTANTN 445 (457) Q Consensus 434 -~~~~~~~~~~~n 445 (457) +...+..-.+.. T Consensus 395 l~~~aa~~~~~~~ 407 (407) T protein:vir:48 395 MKIGAATRQKAAA 407 (407) T ss_pred EEeeccCCCCCCC Confidence 111111111111 No 87 >protein:vir:1025 Length: 408 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076679;genbank:gi:13095788;genbank:GeneID:920362 Probab=77.09 E-value=0.13 Score=25.47 Aligned_cols=320 Identities=10% Similarity=0.083 Sum_probs=126.3 Q ss_pred CchHHHHHHhhHhhcc-----c---------c--ccccccchhhhhhhhhccc---hHHHHHHHHHHhhh---------- Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNH-----E---------S--LPEIEDTHKRGVVAQLLEN---QEKAITEEASVLNE---------- 51 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~-----~---------~--~~~i~~~~~~~v~~~~~~n---~~~~~~~~~~~~~e---------- 51 (457) |+.++|.++|.-+.+. + . +-++... ++.+. .+.+- +++.+.+..+-..+ T Consensus 5 m~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (408) T protein:vir:10 5 LTVNQLNEAWIASGDKVTDFNDQINMALNDDNFSAEAMSEL-KNKRD-NEKVRRDALREQLVEAQAEQVVNMREEEKGPL 82 (408) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccccccc Confidence 8899999888665431 0 0 0011000 00000 00000 00011100000000 Q ss_pred -------------hh-----hccccc--------cccc-ccccccccccee-hhhhHHHhhhHhhhhceeeecCCCccee Q lcl|NC_015286. 52 -------------TL-----QTTGYT--------GAST-ATGPVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGL 103 (457) Q Consensus 52 -------------~~-----~~~g~~--------~~st-~tg~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGL 103 (457) +. ...++. ...+ ..|... .-+.+ -.+++.+.......+++.+.||+++.|- T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~t~~~gg~~-vP~~~~~~Ii~~~~~~~~l~~~~~~~~~~~~~~~ 161 (408) T protein:vir:10 83 NKSENELKDKFVKDFVNMVRNPMAFMNTVSSKTETSGSDSAAGLT-IPQDIRTMINTLVRQYDSLQQYVRVESVSTSNGS 161 (408) T ss_pred ccchhhhHHHHHHHHHHHhhcchhhhhhhhhhhhhcccccCCcee-ccHhHHHHHHHHHHhhchhhhhcceeeccCCcce Confidence 00 000100 0011 111111 11111 1255555566678899999999998887 Q ss_pred eeEeeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhh Q lcl|NC_015286. 104 IFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAE 183 (457) Q Consensus 104 IFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aE 183 (457) +--.|-. +... ...+ .++.+ T Consensus 162 ~~~~~~~--~~~~--------------~a~~--------------------------------------------v~E~~ 181 (408) T protein:vir:10 162 RVYEKWT--DVTP--------------LTVM--------------------------------------------DAEDG 181 (408) T ss_pred EEEeecc--cccc--------------ceee--------------------------------------------ecCcc Confidence 6433310 0000 0000 00000 Q ss_pred ccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeee Q lcl|NC_015286. 184 ALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVK 263 (457) Q Consensus 184 aLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~r 263 (457) ... .+....|.++.|...|..+- ..+|-||.+|- .+|.+++|.+-|+..|..-+|+.||.-.-+.. T Consensus 182 ~~~-~~~~~~~~~i~~~~~k~~~~-------~~iS~ell~ds----~~~l~~~i~~~l~~~~~~~~~~~il~g~g~~~-- 247 (408) T protein:vir:10 182 KIP-DLDNPQLTIIKYLIKRYAGI-------ITATNTSLKDT----AENILAWLSSWIAKKVVVTRNQAIIEVMKAAP-- 247 (408) T ss_pred ccc-cccCcceeeEEeeeeeEEee-------ehhHHHHHhhc----hHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-- Confidence 000 01123466666666666544 45999999994 35788899999999999999998886532211 Q ss_pred eeccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccc Q lcl|NC_015286. 264 GAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNA 343 (457) Q Consensus 264 gk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~ 343 (457) ...++.++ +....+++..... --+..+ .+|||+.....|.. +.- .+|.-- T Consensus 248 ------~~~~~~~~----------~~l~~~~~~~~~~-------~~~~~a-~~v~n~~~~~~l~~---lkd---~~G~~i 297 (408) T protein:vir:10 248 ------KKPTIAKF----------DDVITMINTAVDP-------AIIATS-SLLTNQSGLNKLAL---VKT---AEGKYL 297 (408) T ss_pred ------cccccccH----------HHHHHHHHHhhhh-------hhccCC-EEEEcHHHHHHHHH---hhc---cCCceE Confidence 11222222 1112222111111 112222 46789988887765 211 111111 Q ss_pred ccccccCCceEEEEecCceEEEE--eccccccccc----------ceEEEEEecCCCccceeEEccccccccccccCCcc Q lcl|NC_015286. 344 LTGVDDTSSTLVGTLNGRIKVYV--DPYSANVADK----------HYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDT 411 (457) Q Consensus 344 ~~~~d~~~~~~~G~l~~~~~vy~--D~y~~~~~~~----------dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s 411 (457) +. .+.+ ....++|. +++|++ |...|..... +|++++.++... +=+.++.- .+-.+ T Consensus 298 ~~-~~~~-~~~~~~l~-G~PV~~~~~~~~~~~~~~~~~i~~gd~~~~~~~~~~~~~~----v~~~~~~~------~~f~~ 364 (408) T protein:vir:10 298 LE-PDPT-KPNSYLIK-GKQVIVVADRWLPNTGSTVYPLYYGDMSQAITLFDRENMS----LLPTNIGA------GAFET 364 (408) T ss_pred ec-cCcC-CCCCceec-ceeeEEecccccCccCCCceEEEEEehhccEEEEEecceE----EEEccccc------chhhc Confidence 10 0111 11123553 455555 3233321111 122222222111 11111100 00112 Q ss_pred ccceeeeeeeeee-eeccccc------------ccc--Cccccc Q lcl|NC_015286. 412 FQPKIGFKTRYGM-VSNPFAQ------------GLT--QGSGAL 440 (457) Q Consensus 412 ~qP~~g~~tRY~l-~~nP~~~------------~~~--~~~~~~ 440 (457) .+=.+-+..||+. +.+|-+- +.. ...+.+ T Consensus 365 ~~~~~r~~~r~d~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 408 (408) T protein:vir:10 365 DTTKIRVIDRFDVKATDSEALVAGSFSAIADQVGNFKTTTSTAV 408 (408) T ss_pred CceEEEEEEeeccEEeccccEEEEEeeccccCCCCCCCCCcccC Confidence 3344445566666 4555311 001 111112 No 88 >protein:vir:105038 Length: 428 # NCBI annotation: major capsid head protein precursor # Family: family:all:21 # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006586;genbank:gi:46402092;genbank:GeneID:2777903 Probab=76.66 E-value=0.13 Score=25.38 Aligned_cols=330 Identities=15% Similarity=0.125 Sum_probs=112.9 Q ss_pred CchH-------------HHHHHhhHhhcccccc-----cccc-chhhhhhhhhccchHHHH---------HHH------- Q lcl|NC_015286. 1 MSLQ-------------QLQEKWAPVLNHESLP-----EIED-THKRGVVAQLLENQEKAI---------TEE------- 45 (457) Q Consensus 1 ~~~~-------------~l~~~w~~~l~~~~~~-----~i~~-~~~~~v~~~~~~n~~~~~---------~~~------- 45 (457) ||-+ .|.++...+=..|.+- ++.. ..++.....--+.+.+.. .+. T Consensus 31 lt~ee~~~~~~l~~e~~~l~~~i~~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (428) T protein:vir:10 31 LTAEQLTEFAGLQQQFTDISAKMDRMEATERAAALVAKPVKATQHGPAVIVKAEPKQYTGAGMTRMVMSIAAAQGNLQDA 110 (428) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhccccccccccchhhhHHHHHHHHHHHHhhhhHHHH Confidence 3322 2333332211001000 0000 000011011111111110 000 Q ss_pred HHHhhhhhhccc--c-ccccccccccc---cccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCccc Q lcl|NC_015286. 46 ASVLNETLQTTG--Y-TGASTATGPVA---GFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAA 119 (457) Q Consensus 46 ~~~~~e~~~~~g--~-~~~st~tg~i~---~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~ 119 (457) ..+..+...... . ....+++|.+. ...+. ++.+..+..+..++ |+..+++++|-+-=.| ..+ ++ T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~gg~liP~~~~~~---ii~~l~~~~~l~~~-~~~~~~~~~g~~~~p~--~~~--~~-- 180 (428) T protein:vir:10 111 AKFASDELNDQSVSMAISTAAGSGGVLIPQNIHSE---VIELLRDRTIVRKL-GARSIPLPNGNMSLPR--LAG--GA-- 180 (428) T ss_pred HHHhhhhhhhhhHhhhhcccccCCccccchhHHHH---HHHHHhhhchhhhh-cceeeecCCcceEEEE--EeC--Cc-- Confidence 000000000000 0 01111122211 11122 23333344555555 3333333333321001 000 00 Q ss_pred CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCccccccee Q lcl|NC_015286. 120 SGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGF 199 (457) Q Consensus 120 ~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsF 199 (457) .+ + . .+| +...++... T Consensus 181 ----~a---------------------------------------------~------~--v~E-------g~~~~~~~~ 196 (428) T protein:vir:10 181 ----TA---------------------------------------------S------Y--TGE-------NQDAKVSEA 196 (428) T ss_pred ----ce---------------------------------------------e------e--ecc-------Ccccccccc Confidence 00 0 0 011 012333444 Q ss_pred EEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEee-- Q lcl|NC_015286. 200 SIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDL-- 277 (457) Q Consensus 200 sIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl-- 277 (457) ++++++...|.-+-...+|-||.+|- ..|.++.|.+-|...|...+|+.||.- .-.+....|++-- T Consensus 197 ~f~~i~~~~~k~~~~v~is~ell~ds----~~~l~~~i~~~l~~ai~~~~d~~~l~G--------~G~~~~p~Gi~~~~~ 264 (428) T protein:vir:10 197 RFDDVKLTAKTMIAMVPISNALIGRA----GFNVEQLVLQDILTAISVREDKAFMRD--------DGTGDTPIGMKARAT 264 (428) T ss_pred ceeeEEeeeEEEEEeehhhHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCccccccccccc Confidence 45566666666666788999999884 246789999999999999999988752 1111122333221 Q ss_pred --------ccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccccccccccc Q lcl|NC_015286. 278 --------DVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDD 349 (457) Q Consensus 278 --------~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~ 349 (457) ......- ......+ ......+...... .......|+++.....|.. +. ..+|. ..-.+. T Consensus 265 ~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~--~~~~~~~v~n~~~~~~L~~---lk---d~~G~--~i~~~~ 331 (428) T protein:vir:10 265 QWNRLLPWAADAAVN--LDTIDTY-LDSIILMSMDGNS--NMISSGWGMSNRTYMKLFG---LR---DGNGN--KVYPEM 331 (428) T ss_pred ccccccccccccccc--HHHHHHH-HHHHHHhhhcccc--ccccCEEEEcHHHHHHHHH---hh---ccCCc--eeccCC Confidence 1111110 0111111 1111111111111 1223345678888877765 21 11121 111122 Q ss_pred CCceEEEEecCceEEEEeccccccc------------ccceEEEEEecCCCccceeEEcccccccccccc---CCccccc Q lcl|NC_015286. 350 TSSTLVGTLNGRIKVYVDPYSANVA------------DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAI---NPDTFQP 414 (457) Q Consensus 350 ~~~~~~G~l~~~~~vy~D~y~~~~~------------~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~---Dp~s~qP 414 (457) . -|+| .+++||++.+.|.+. ++.++++|..+.-+.+ ..+|......... .=..-+= T Consensus 332 ~----~g~l-~G~pv~~~~~~p~~~~~~~~~~~i~~gd~s~~~i~~~~~i~i~----~~~~~~~~~~~~~~~~~f~~~~~ 402 (428) T protein:vir:10 332 A----QGML-KGYPIQRTSAIPANLGEGGKESEIYFADFNDVVIGEDGNMKVD----FSKEASYIDTDGKLVSAFSRNQS 402 (428) T ss_pred C----CCee-eceeeEEeccccccccCCCccceEEEEecceEEEEEecceEEE----eecccccccccccccchhhcchh Confidence 2 2455 467888887766321 1223445555444322 2222211111000 0000011 Q ss_pred eeeeeeeeee-eeccccccccCcccccccccch-h Q lcl|NC_015286. 415 KIGFKTRYGM-VSNPFAQGLTQGSGALTANTNR-Y 447 (457) Q Consensus 415 ~~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~n~-~ 447 (457) .+=...|+++ +.+|-+- .-.++. | T Consensus 403 ~~R~~~r~d~~v~~p~a~---------~~~t~~~~ 428 (428) T protein:vir:10 403 LIRVVTEHDIGFRHPEGL---------VLGTGVLF 428 (428) T ss_pred heeeeeeeCceeeccceE---------EEEeccCC Confidence 1123445554 2223211 111111 1 No 89 >protein:vir:9574 Length: 300 # NCBI annotation: gp40 # Family: family:all:966 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862879;genbank:gi:32469471;genbank:GeneID:1461316 Probab=76.26 E-value=0.14 Score=25.31 Aligned_cols=281 Identities=14% Similarity=0.101 Sum_probs=122.4 Q ss_pred cccccccccccccccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccc Q lcl|NC_015286. 59 TGASTATGPVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGG 137 (457) Q Consensus 59 ~~~st~tg~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~ 137 (457) -++.++++... .-|.+ -.++.++.+..+..+++.+.||++-..-+. ++.. ++ +|- + T Consensus 1 ma~~t~~~G~l-ip~~~~~~ii~~l~~~s~i~~l~~~~~~~~~~~~~p----~~~~--~~------~a~-------w--- 57 (300) T protein:vir:95 1 MSEAQLSKGNL-FNPELVTKVINKVKGHSSIAKLSPQKPIPFNGQREF----VFDF--DS------DID-------I--- 57 (300) T ss_pred CcccccCCcce-echhhHHHHHHHHHhhhhhhhhcceeeccCCceEEE----EEec--Cc------ceE-------E--- Confidence 23333333322 22322 234455556777889999999986432221 1110 00 000 0 Q ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeeccccccee Q lcl|NC_015286. 138 PGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEY 217 (457) Q Consensus 138 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEY 217 (457) .+| +...++...+++.++..+|.=+-...+ T Consensus 58 -------------------------------------------v~E-------g~~~~~s~~~f~~v~l~~~k~~~~~~i 87 (300) T protein:vir:95 58 -------------------------------------------VAE-------NGKKTHGGVSLDPVTIVPLKVEYGARV 87 (300) T ss_pred -------------------------------------------eeC-------CcccccccccceeeEeeeEEEEEeehh Confidence 011 012333334445555666555556678 Q ss_pred eHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc----ccceeEeeccccchhHHHHHHHHH Q lcl|NC_015286. 218 SIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT----ATAGVFDLDVDSNGRWSVEKFKGL 293 (457) Q Consensus 218 T~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v----~~~Gv~Dl~~~~~grw~~e~~k~l 293 (457) |-||.+.... ..+|-+++|.+-|...|...+++.+|.-.. +..|+..++ ...+.........+--.-+-...+ T Consensus 88 S~ell~~~~d-~~~~l~~~i~~~l~~aia~~~d~~~l~G~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 164 (300) T protein:vir:95 88 SDEFLHASEE-AKVDMLTDFVEGFSKKLARGLDIMSIHGIN--PRTKQASTIIGDNCFDKKVTQTVPFKDTNPDESMEDA 164 (300) T ss_pred hHHHhccCCC-CHHHHHHHHHHHHHHHHHHHHHHhhhhccc--CCCCCCcccccccccccccceeecccccchHHHHHHH Confidence 8898753222 235678888888899999999988885421 111111100 111111111111111000111122 Q ss_pred HHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccc Q lcl|NC_015286. 294 LFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANV 373 (457) Q Consensus 294 ~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~ 373 (457) +..+ ..-.++.+-+|+++.....|.. ++ ..+|.--+ ..+.+ ....|+|.| ++|+++.+.|.. T Consensus 165 ~~~~---------~~~~~~~~~~vmn~~~~~~L~~---lk---d~~G~~i~-~~~~~-~~~~~~l~G-~Pv~~s~~v~~~ 226 (300) T protein:vir:95 165 VGMI---------DGSERDITGAILDPIFTTALSK---MK---NAEGGKLY-PELAW-GGVPDAING-LAVDKNRTVSYS 226 (300) T ss_pred HHHh---------hhcCCCccEEEECHHHHHHHHH---hh---ccCCCeec-cCccc-cCCCceecc-eeeEEecCCCCC Confidence 1222 1134566668899999887765 21 11221111 11111 123577754 699988776532 Q ss_pred c--ccceEEEEEecCCCccceeEEccccc--cccccccCCcc-----c---cceeeeeeeeee-eecccccc-ccCccc Q lcl|NC_015286. 374 A--DKHYYVAGYKGTSPYDAGLFYCPYVP--LQQVRAINPDT-----F---QPKIGFKTRYGM-VSNPFAQG-LTQGSG 438 (457) Q Consensus 374 ~--~~dY~~vG~KG~~~~d~glfyaPYv~--~~~~~~~Dp~s-----~---qP~~g~~tRY~l-~~nP~~~~-~~~~~~ 438 (457) . +.+.+++|=- ..+++|..... +....--|+++ | |=.+=+..|+|. +.+|-+-. ++...+ T Consensus 227 ~~~~~~~~~~GDf-----~~~~~~~~~~~~~~~v~~~~~~d~~~~~~f~~~~v~~r~~~r~d~~v~~~~a~~~l~~~~g 300 (300) T protein:vir:95 227 QTDPKNTAIVGDF-----ETMFKWGYAKEVPMEIIKYGDPDNSGRDLKGYNQIYIRCEAYIGWGIMDAASFARIVKTGG 300 (300) T ss_pred CCCCccEEEEeec-----cceEEEEEecccEEEEeeccCCCCcchhhhhcCcEEEEEEEeecceeecccceEEEecCCC Confidence 1 1223333310 01111211111 11111112221 2 233344558886 56776432 232222 No 90 >protein:vir:94711 Length: 347 # NCBI annotation: capsid # Family: family:all:975 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338120;genbank:gi:77118198;genbank:GeneID:3707734 Probab=75.30 E-value=0.15 Score=25.13 Aligned_cols=305 Identities=19% Similarity=0.111 Sum_probs=129.2 Q ss_pred CCCcceeeeEeeeeecccCCcccCccc------ccccccccccccccccccccccccccccccccccccccccccccccc Q lcl|NC_015286. 97 MTGPTGLIFAMRTNYGAERDPAASGYD------EAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQ 170 (457) Q Consensus 97 mTGPTGLIFAMRsrY~~~~g~~~~~~~------EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~ 170 (457) |.--++. +.+++.|.+..+++ |.|-.|..+.|.-.+-.. .-.......+.+..-++.....+... T Consensus 1 m~~~~~~------~~~t~~g~~~~~~d~~al~ik~f~~eV~~~f~~~s~~~---~~~~~r~i~~G~sv~i~~iG~~tv~~ 71 (347) T protein:vir:94 1 MANVPGQ------KIGTDQGKGKSSSDALALFLKVFAGEVLTAFTRRSVTA---DKHIVRTIQNGKSAQFPVMGRTSGVY 71 (347) T ss_pred CCCCCcc------ccccccccCCccccHHHHHHHHHhHHHHHHHHHHHhhh---cccccccccccceEEEecccceeeee Confidence 5555553 33333333222222 233345555543211100 00111111111111111111111110 Q ss_pred cccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhh Q lcl|NC_015286. 171 TADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEIN 250 (457) Q Consensus 171 ~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEIN 250 (457) + ..++.+...-....-.|+-++||++.+ +.+-+.-.-|.++ | .|-..|++.-....++.+++ T Consensus 72 ~--------t~G~~l~~~~~~~~~~e~~itID~~~~--------~~~~VddiD~~q~-~-~D~~~~~~~~~g~aLa~~~D 133 (347) T protein:vir:94 72 L--------APGERLSDKRKGIKHTEKVITIDGLLT--------ADVMIFDIEDAMN-H-YDVAGEYSNQLGEALAIAAD 133 (347) T ss_pred e--------cCCCCcCCCCCCCCcceEEEEecchhh--------hhHHhhhHHHHhc-C-cchHHHHHHHHHHHHHHHHH Confidence 1 111222111112244677788887632 2333443444444 4 78889999999999999999 Q ss_pred HHHHhhhhheee-eee----ccccccceeEeeccccchhH---HHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhH Q lcl|NC_015286. 251 REVVRTIYTNAV-KGA----QNNTATAGVFDLDVDSNGRW---SVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADV 322 (457) Q Consensus 251 ReIi~~l~tvA~-rgk----~~~v~~~Gv~Dl~~~~~grw---~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~v 322 (457) +-|++.|..++- ... ..+....-+++.....+.-- ....+-..+++.....+ .+---=.|.|+|.+|+. T Consensus 134 ~~i~~~~~~~aa~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~Ld---e~~VP~~~R~~vv~P~~ 210 (347) T protein:vir:94 134 GAVLAEMAILCNLPAASNENIAGLGTASVLEVGKKADLDTPAKLGEAIIGQLTIARAKLT---SNYVPAGDRYFYTTPDN 210 (347) T ss_pred HHHHHHHHHHhccccccccccCCCcccceeeccccccccchhhhHHHHHHHHHHHHHHHh---hcCCCCCCcEEEeCHHH Confidence 999987754332 111 11222222333221221100 01111112222222222 22223348999999999 Q ss_pred HHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEeccccccc------ccceEEEE-------------E Q lcl|NC_015286. 323 ASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVA------DKHYYVAG-------------Y 383 (457) Q Consensus 323 a~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~------~~dY~~vG-------------~ 383 (457) .++|-.. ..+... ....+ .+.....+|.+ .+++||.-...|... ...|-++. | T Consensus 211 ~~~Ll~~--~~~~~~----~~~~~-~~~~~G~Vg~i-~G~~V~~Sn~lp~~~~t~~~~~~~~~~~aG~~~~~~~~~~~~~ 282 (347) T protein:vir:94 211 YSAILAA--LMPNAA----NYAAL-IDPETGNIRNV-MGFVVVEVPHLVQGGAGETRGDDGITIASGQKHAFPATASSDV 282 (347) T ss_pred HHHHhcc--chhhhh----hcccc-ccccccceEEE-eceEEEecCcccccccccccccCcceecCcccccccccchhhh Confidence 9877442 222221 11111 22333467888 679999986655211 11222221 2 Q ss_pred ecCCCccceeEEccc----ccccccc---ccCCccccceeeeeeeeee-eeccccccc-cCcccc Q lcl|NC_015286. 384 KGTSPYDAGLFYCPY----VPLQQVR---AINPDTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGA 439 (457) Q Consensus 384 KG~~~~d~glfyaPY----v~~~~~~---~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~ 439 (457) +++-.-..+|||-|= +.+.++. -.|+..|-=.|==+..||- +.+|-+-+. .-..+. T Consensus 283 ~~~~~~~~~l~~h~~A~~~v~~~~~~~e~~r~~~~~~d~i~~~~~~G~~~~rP~~a~~~~~~~A~ 347 (347) T protein:vir:94 283 KVTMDNVVGLFSHRSAVGTVKLRDLALERDRDVDAQGDLIVGKYAMGHGGLRPEAAGALVFSPAE 347 (347) T ss_pred cccccceeEEEeehhhhhhhhcccccccchhchhhHHHHhhhhhhhcCcccccceeEEEEecCCC Confidence 333233356777664 2222211 2355555544333444554 566653322 111111 No 91 >protein:vir:2504 Length: 305 # NCBI annotation: major capsid subunit gp9 # Family: family:all:507 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569745;genbank:gi:18496895;genbank:GeneID:932268 Probab=71.41 E-value=0.2 Score=24.46 Aligned_cols=285 Identities=11% Similarity=0.033 Sum_probs=122.0 Q ss_pred cccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccc Q lcl|NC_015286. 58 YTGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGG 137 (457) Q Consensus 58 ~~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~ 137 (457) +...+++.+...--....-.+++++....+..+++-+.||++++--|--.. . ++ +| .|- T Consensus 1 ma~~t~~~gg~liP~~~~~~Ii~~~~~~s~l~~l~~~~~~~~~~~~~p~~~----~--~~------~a-------~wv-- 59 (305) T protein:vir:25 1 MADISRAEVASLIQEAYSDTLLAAAKQGSTVLSAFQNVNMGTKTTHLPVLA----T--LP------EA-------DWV-- 59 (305) T ss_pred CCCccCCccceecCHHHHHHHHHHHHhhchhhhhcceeeccCCcEEEEEEe----C--Cc------ce-------EEe-- Confidence 333333333322222222346667777888889999999988763321111 0 00 00 000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeeccccccee Q lcl|NC_015286. 138 PGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEY 217 (457) Q Consensus 138 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEY 217 (457) .++|...+ ..++.-..++++++..++..+-...+ T Consensus 60 ------------------------------------------~E~~~~~~----~~~~~s~~~f~~i~~~~~k~~~~~~i 93 (305) T protein:vir:25 60 ------------------------------------------GESATDPK----GVKPTSKVTWANRTLVAEEIAVIIPV 93 (305) T ss_pred ------------------------------------------eccccccc----ccccccccceeeEEeeeEEEEEeehh Confidence 00000000 01111122235555555555666779 Q ss_pred eHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec-----cccchhHHHHHHHH Q lcl|NC_015286. 218 SIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD-----VDSNGRWSVEKFKG 292 (457) Q Consensus 218 T~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~-----~~~~grw~~e~~k~ 292 (457) |-||.+|-. .|.+++|.+-|+..|+..+++.+|.-- |+..+....++.... .....- .....-. T Consensus 94 s~ell~ds~----~~~~~~i~~~l~~~~a~~~d~a~~~G~------g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 162 (305) T protein:vir:25 94 HENVIDDAT----VAVLTEVAELGGQAIGKKLDQAVIFGT------DKPASWVSPALIPAAVTAGQAVEVVG-GVANESD 162 (305) T ss_pred hHHHHhcch----HHHHHHHHHHHHHHHHHHHhhhheecc------CCCCCccccccccccccccccccccc-cchhhhH Confidence 999999844 578999999999999999999998531 111111111111000 000000 0000001 Q ss_pred HHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEeccccc Q lcl|NC_015286. 293 LLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSAN 372 (457) Q Consensus 293 l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~ 372 (457) ++.-+ ..+..... .-.+..|=+++++.....|.. +.- .+|. .... -++| .+++|+|..+.|. T Consensus 163 ~~~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~---lkd---~~G~--~i~~-------~~~l-~G~Pv~~~~~~~~ 224 (305) T protein:vir:25 163 IVGAT-NRAAKAVA-SAGWAPDTLLSSLALRYEVAN---IRD---ANGN--PVFR-------DDSF-AGFRTFFNRNGAW 224 (305) T ss_pred HHHHH-HHHHHhhh-hcccccceeEecHHHHHHHHH---hhc---cCCc--eeec-------CCcc-cccceEEcCccCC Confidence 11111 11111111 122344447888888877754 211 1111 1111 1345 4578888766553 Q ss_pred cccc--------ceEEEEEecCCCccceeEEccccccccccccCCcc-cc-ceee--eeeeeee-eecccccc-ccCccc Q lcl|NC_015286. 373 VADK--------HYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDT-FQ-PKIG--FKTRYGM-VSNPFAQG-LTQGSG 438 (457) Q Consensus 373 ~~~~--------dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s-~q-P~~g--~~tRY~l-~~nP~~~~-~~~~~~ 438 (457) .... .++++|..+..+.+ ...+.-+.+- -.|.+ || ..++ ...|||+ +.||-+-. ++..+. T Consensus 225 ~~~~~~~~~gd~s~~~i~~~~~~~i~----~~~~~~~~~~--~~~~~~~~~~~~~~R~~~r~~~~v~~p~a~v~~~~~~~ 298 (305) T protein:vir:25 225 DADAAIEVIADSSRVKIGVRQDITVK----FLDQATLGTG--ENQINLAERDMVALRLKARFAYVLGVSATAQGANKTPV 298 (305) T ss_pred CCCccEEEEEecceEEEEEecCeEEE----EeeeeeeecC--CceeeeeecCcEEEEEEEeecceeeCcccEEEEccccc Confidence 2221 11222222222111 1111100000 01111 22 1233 4668997 77887542 233332 Q ss_pred -cccccc Q lcl|NC_015286. 439 -ALTANT 444 (457) Q Consensus 439 -~~~~~~ 444 (457) .+...+ T Consensus 299 ~~~~pa~ 305 (305) T protein:vir:25 299 AVVAPAA 305 (305) T ss_pred cccCCCC Confidence 233344 No 92 >protein:vir:4997 Length: 397 # NCBI annotation: major head protein # Family: family:all:21 # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049971;genbank:gi:9632943;genbank:GeneID:1262106 Probab=71.16 E-value=0.2 Score=24.42 Aligned_cols=322 Identities=12% Similarity=0.071 Sum_probs=122.7 Q ss_pred CchHH----------HHHHhhHh------hccccccccccchhhhhhhhhccchHHHHHHHHHHhhhhhhccc------c Q lcl|NC_015286. 1 MSLQQ----------LQEKWAPV------LNHESLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTG------Y 58 (457) Q Consensus 1 ~~~~~----------l~~~w~~~------l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g------~ 58 (457) -..|+ +.++=..+ ...+.........++.+.. +-.+...+..+.+...+...+ . T Consensus 34 ~~~ee~~~l~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (397) T protein:vir:49 34 VSAEELQAIKNERDTAKMKRDLFKEQYTEARANEVANMSEEEKKPLTK----NEEEVKANFVKDFKNLVRGRYQNLLDSK 109 (397) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc----hhhHHHHHHHHHHHHHhhcchhhHHHhh Confidence 00000 00000000 0000000000000000000 000000111111111111000 0 Q ss_pred ccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccccccc Q lcl|NC_015286. 59 TGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGP 138 (457) Q Consensus 59 ~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~ 138 (457) ...+++.|.+.--....-.+++..-+.....+++.|+||++.+|-+-=.+ ..+. .+ .+ .| T Consensus 110 ~~~t~~~gg~~iP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~------~a-------~~---- 169 (397) T protein:vir:49 110 TDGSGSDAGLTIPQDIRTAINTLVRQFDSLQEYVNVENVTTLTGSRVYEK--WADI-TG------LA-------KL---- 169 (397) T ss_pred hccCCccCcceecHHHHHHHHHHHHhhhhHhhhcceeeccCCcceEEEEe--eccC-Cc------ce-------ee---- Confidence 11111122111111111235555667778889999999999887532111 1110 00 00 00 Q ss_pred cccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceee Q lcl|NC_015286. 139 GAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYS 218 (457) Q Consensus 139 ~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT 218 (457) .++.+...+ +....|.++.|++.|. +-...+| T Consensus 170 ----------------------------------------v~E~~~~~~-~~~~~~~~v~~~~~k~-------~~~~~iS 201 (397) T protein:vir:49 170 ----------------------------------------DDEGGQIGQ-NDDPKLSLIRYAIKRY-------AGISTVT 201 (397) T ss_pred ----------------------------------------ecccccccc-ccccceeeeEeeeeee-------EeehhhH Confidence 000000000 1112345555544444 4456789 Q ss_pred HHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHH Q lcl|NC_015286. 219 IELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIE 298 (457) Q Consensus 219 ~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~ 298 (457) -||.+|-. +|.+++|.+-|+..|..-+|+.||.-.- .+....++++++ -...+...+. T Consensus 202 ~ell~ds~----~~l~~~i~~~l~~~~~~~~d~ail~G~g--------~~~~~~~~~~~d----------~i~~~~~~l~ 259 (397) T protein:vir:49 202 NSLLADSA----ENILAWLSGWIAKKVVVTRNKAILEAIG--------TLPNKPTLAKWD----------DIIDLQAKVD 259 (397) T ss_pred HHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHhccc--------cccccccccCHH----------HHHHHHHhhh Confidence 99999853 5789999999999999999999886421 112223333221 1223333332 Q ss_pred HHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEE--eccccccccc Q lcl|NC_015286. 299 RDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYV--DPYSANVADK 376 (457) Q Consensus 299 ~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~--D~y~~~~~~~ 376 (457) . .......+|+++.....|.. |. ..+|.- ....+.+ ....++|.|+ +|++ |...|..... T Consensus 260 ~---------~~~~~a~~v~n~~~~~~l~~---lk---d~~g~~-l~~~~~~-~g~~~~l~G~-pV~~~~~~~~~~~~~~ 321 (397) T protein:vir:49 260 P---------AIKQTSLFLTNTSGFTALKK---VK---NAMGDY-LMERDVK-SPTGYSIDGF-VVKEISDRFLPNGTGG 321 (397) T ss_pred h---------hhcCCCEEEEcHHHHHHHHH---hh---ccCCce-eeccccc-CCCCceecce-eeEEecccccccccCC Confidence 1 22345678899999888776 21 111110 0111111 1123566554 5543 3333321111 Q ss_pred ----------ceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccc-------cccCccc Q lcl|NC_015286. 377 ----------HYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQ-------GLTQGSG 438 (457) Q Consensus 377 ----------dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~-------~~~~~~~ 438 (457) +|++++..+..+ +-..||.. -+-...|-.+-...|++. +.+|-+- ..++.+. T Consensus 322 ~~~~~~gd~~~~~~~~~~~~~~----i~~~~~~~------~~~~~~~~~~~~~~r~d~~~~~~~a~~~~~~~~~~~~~~~ 391 (397) T protein:vir:49 322 AMPLYFGDLKQAVTLFDRQHLS----LLSTNIGG------GAFETDTTKVRVIDRFDVVSTDTEAFVPASFKAIADQKAK 391 (397) T ss_pred ceeEEEeeccceEEEEeecccE----EEEecccc------chhhcCeeeEEEEEeeccEEecccceEEEEecccccccCc Confidence 122222222222 22223211 112233444555667766 4555421 1122222 Q ss_pred cccccc Q lcl|NC_015286. 439 ALTANT 444 (457) Q Consensus 439 ~~~~~~ 444 (457) .-..|. T Consensus 392 ~~~~~~ 397 (397) T protein:vir:49 392 LSTAGA 397 (397) T ss_pred ccccCC Confidence 222222 No 93 >protein:vir:1638 Length: 298 # NCBI annotation: Structural protein # Family: family:all:966 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695059;genbank:gi:23455750;genbank:GeneID:955469 Probab=70.59 E-value=0.21 Score=24.33 Aligned_cols=278 Identities=15% Similarity=0.139 Sum_probs=118.3 Q ss_pred ccccccccccccccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccc Q lcl|NC_015286. 59 TGASTATGPVAGFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGG 137 (457) Q Consensus 59 ~~~st~tg~i~~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~ 137 (457) .+ +++|.. .-|.+. .+++.+.++.+..+++.+.||++...-|. .. .+. .+|- T Consensus 1 ma--~~gG~l--vp~~~~~~ii~~~~~~s~i~~l~~~~~~~~~~~~ip-~~------~~~-----~~a~----------- 53 (298) T protein:vir:16 1 MV--LNKGTL--FDPTLVTDLISKVAGKSSIARLSAQKPIPFNGEKVF-TF------TMD-----SEID----------- 53 (298) T ss_pred Cc--ccCcce--echhHHHHHHHHHHhhhhhhhhcceeeccCCceEEE-EE------ecC-----cceE----------- Confidence 11 111211 122222 24555557788999999999986432221 11 110 0000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeeccccccee Q lcl|NC_015286. 138 PGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEY 217 (457) Q Consensus 138 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEY 217 (457) -.+|. ..+++-..++++++..+|.-+-.... T Consensus 54 ------------------------------------------~v~E~-------~~~~~~~~~f~~v~l~~~k~a~~~~i 84 (298) T protein:vir:16 54 ------------------------------------------VVAES-------GKKTHGGVTLAPQTMVPIKVEYGARI 84 (298) T ss_pred ------------------------------------------EecCC-------ccccccccceeEEEEeeeeEEEeehh Confidence 00110 12333333445555555555556789 Q ss_pred eHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc-ccceeEe---eccccc-hhH-HHHHHH Q lcl|NC_015286. 218 SIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT-ATAGVFD---LDVDSN-GRW-SVEKFK 291 (457) Q Consensus 218 T~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v-~~~Gv~D---l~~~~~-grw-~~e~~k 291 (457) |-||.++--- -..|-+++|.+-|+..|...|+..++.-.-. --|+..++ ...++.. ...... ..+ ...... T Consensus 85 S~ell~~s~d-~~~~l~~~i~~~la~ai~~~~d~~~l~G~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 161 (298) T protein:vir:16 85 SDEFMYASDE-EKINILQEFNDGFAKKVARGIDLMAFHGVNP--RLGTASAVIGTNHFDSKVTQKVEAPRGIADPNGAIE 161 (298) T ss_pred hHHHhhcCcc-cHHHHHHHHHHHHHHHHHHHHHHHhhccccC--CCCcccccccccccccccccccccccccccHHHHHH Confidence 9999875432 1245677888888888888888888764110 01111111 0111111 011111 111 011122 Q ss_pred HHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccc Q lcl|NC_015286. 292 GLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSA 371 (457) Q Consensus 292 ~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~ 371 (457) .++.++.. ..++..-+|+++.....|.. ++ ..+|.--+ ..+.+ .--.|+|.| ++|+++...| T Consensus 162 ~~~~~~~~---------~~~~~~~~vmn~~~~~~l~~---lk---d~~G~~i~-~~~~~-~~~~~~l~G-~PV~~~~~v~ 223 (298) T protein:vir:16 162 NAVELLTG---------VDADVTGIAINPSFRSALAK---QK---DLQDNALF-PELKW-GATPDTING-LPVDVNKTVS 223 (298) T ss_pred HHHHHhhh---------cCCCccEEEEcHHHHHHHHH---hh---ccCCCeee-cCccc-CCCCceecc-eeeEEecccc Confidence 22222211 23445568889998887765 21 11111101 11111 112367754 6999887766 Q ss_pred cc--cccceEEEEEecCCCccceeEEcccc--ccccccccCCcc-----cc-ceeee--eeeeee-eeccccccccCccc Q lcl|NC_015286. 372 NV--ADKHYYVAGYKGTSPYDAGLFYCPYV--PLQQVRAINPDT-----FQ-PKIGF--KTRYGM-VSNPFAQGLTQGSG 438 (457) Q Consensus 372 ~~--~~~dY~~vG~KG~~~~d~glfyaPYv--~~~~~~~~Dp~s-----~q-P~~g~--~tRY~l-~~nP~~~~~~~~~~ 438 (457) .. .+.+.+++|-- ..++.|..-- ++...+-.||++ || =.++| ..|++. +.+|-+-. T Consensus 224 ~~~~~~~~~~~~GDf-----s~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~v~~ra~~r~d~~v~~~~a~~------ 292 (298) T protein:vir:16 224 DMSLTQRDRAIIGDF-----ANGFKWGYAKEVPLEVIQYGDPDNSGLDLKGYNQVYIRAELFLGWGILDATKFA------ 292 (298) T ss_pred cccCCCccEEEEeec-----cceEEEEEecCceEEEeeccCCcCcchhhhhcCcEEEEEEEEEccEeecccceE------ Confidence 32 22344554410 0111111110 111111123332 22 11333 557775 66664221 Q ss_pred ccccccc Q lcl|NC_015286. 439 ALTANTN 445 (457) Q Consensus 439 ~~~~~~n 445 (457) .+.+.+ T Consensus 293 -~l~~at 298 (298) T protein:vir:16 293 -RVTEAN 298 (298) T ss_pred -EEeecC Confidence 111111 No 94 >protein:vir:101607 Length: 379 # NCBI annotation: major capsid protein precursor # Family: family:all:585 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112497;genbank:gi:53793597;uniprot:Q5ZGF6;genbank:GeneID:3101715 Probab=69.13 E-value=0.23 Score=24.11 Aligned_cols=324 Identities=15% Similarity=0.102 Sum_probs=120.3 Q ss_pred CchHHHHHHhhHhhccccccccccchhhhhh---hhhccchH---HH-----------------HHHHHHHhhhhhh--c Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTHKRGVV---AQLLENQE---KA-----------------ITEEASVLNETLQ--T 55 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~~~~v~---~~~~~n~~---~~-----------------~~~~~~~~~e~~~--~ 55 (457) ...++..++...+.. .+.+..+...+.+- ..|-+..+ +. +........+.-. . T Consensus 23 ~~~~e~~~~~e~~~~--~~~~~~~~~~~e~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (379) T protein:vir:10 23 AQALEVKGLIEALEA--KMTSEKDLAVNELKSDMAALQAHADKLDVKLKEKAKSEDKSDSLVKSITENFNDIKEVRNGKS 100 (379) T ss_pred HHHHHHHHHHHHHHh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHhHHHHHhhhh Confidence 011111111111100 00000000000000 00000000 00 0000000000000 0 Q ss_pred cc--ccccccccccccccccee--hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccc Q lcl|NC_015286. 56 TG--YTGASTATGPVAGFDPVL--ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPN 131 (457) Q Consensus 56 ~g--~~~~st~tg~i~~~~P~L--v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~ 131 (457) .+ ..+..+++.+.+..=|.- -.+++..-..+...+++.|.||++++.-|.-.. + ..++ T Consensus 101 ~~~~~~~~~~~~~~~~~~ip~~~~~~ii~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~-~~~~-------------- 162 (379) T protein:vir:10 101 IQVKAVGDMTLPVNLTGAQPKDYNFDVVLNPSQMLNVSDIVGAVSISGGTYTFVREN---G-AGEG-------------- 162 (379) T ss_pred hhhhhhcccccCCCCccccchhhhhHHHHhHHhhhhHHhhceeeeccCCceEEEEee---c-CCCc-------------- Confidence 00 001111222222111211 123343444557779999999988754332100 0 0000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecc Q lcl|NC_015286. 132 AGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARAR 211 (457) Q Consensus 132 t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSR 211 (457) . + .-.+| +...+++..++++++..+|.= T Consensus 163 -------~------------------~--------------------~~v~E-------g~~~~~~~~~f~~i~~~~~k~ 190 (379) T protein:vir:10 163 -------A------------------I--------------------GAQVE-------GATKGQKDYDISMIDVNTDFI 190 (379) T ss_pred -------c------------------c--------------------ccccC-------CccccccccceeeeEeeeeeE Confidence 0 0 00011 012233333444444444444 Q ss_pred cccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHH Q lcl|NC_015286. 212 ALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFK 291 (457) Q Consensus 212 aLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k 291 (457) +--..+|-||.||-- +.++.|.+-|+..|+.-+|..++.-+.+.+.-+.... .+. ..++..+ T Consensus 191 ~~~~~iS~ell~D~~-----~l~~~i~~~la~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~-~~~d~i~ 252 (379) T protein:vir:10 191 AGFTRYSKKMANNLP-----FLTSFIPNALRRDYAKAENAAFNAVLAANATASTEII------------TNK-NKVEMLI 252 (379) T ss_pred EeeehhhHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc------------cCc-ccHHHHH Confidence 444679999999963 2788899999999999999988876543322111111 111 1223334 Q ss_pred HHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccc-cccccCCceEEEEecCceEEEEeccc Q lcl|NC_015286. 292 GLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNAL-TGVDDTSSTLVGTLNGRIKVYVDPYS 370 (457) Q Consensus 292 ~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~-~~~d~~~~~~~G~l~~~~~vy~D~y~ 370 (457) .+++++.. ..+..+-+|+++.....|.. +. ..+|.--+ .+...+. .-.-+|. +++|+++++. T Consensus 253 ~~~~~~~~---------~~~~~~~~vmn~~~~~~l~~---lk---d~~G~~l~~~~~~~~~-~~~~~l~-G~pvv~s~~~ 315 (379) T protein:vir:10 253 NEIAKQEN---------LDFPVTAIVLRPTDYYDILV---TQ---KSVGAGYGLPGVVTQD-NGVLRIN-GIPLFRATWL 315 (379) T ss_pred HHHHhhhh---------ccCCCCEEEEcHHHHHHHHH---hh---ccCCceeccCCccCCC-CCcceec-ceeeEecCCC Confidence 44444421 24456668899998877754 21 11111000 0000000 0011343 5799999887 Q ss_pred ccccccceEEEEEecCCCccceeEEcccccccccc--ccCCccccceeeeeeeeee-eeccccccccCcccccccccchh Q lcl|NC_015286. 371 ANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVR--AINPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGALTANTNRY 447 (457) Q Consensus 371 ~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~--~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~n~~ 447 (457) |. -+ +++|=- . ..-+++--=+..+..+ .-+-.+.+=.+=+..|+|+ +.+|-+-- T Consensus 316 ~a---g~-~~~gdf---~-~~~~~~~~~~~i~~~~~~~~~f~~~~~~~r~~~R~~~~v~~p~a~v--------------- 372 (379) T protein:vir:10 316 AA---NK-YYVGDW---T-RVTKVTTEGLSLEFSEVEGTNFVKNNITARIEAQVALAVEQPAALI--------------- 372 (379) T ss_pred CC---Cc-eEEeec---c-cEEEEEEeceEEEEeecccccccCCcEEEEEEEEeccEEecCccEE--------------- Confidence 63 12 333211 1 0111111000000000 0011222223334468877 66664321 Q ss_pred eeeeeeeec Q lcl|NC_015286. 448 YRRVQVANL 456 (457) Q Consensus 448 ~~r~~~~~l 456 (457) ++.+.-+ T Consensus 373 --~~~~~~~ 379 (379) T protein:vir:10 373 --FGDFTAV 379 (379) T ss_pred --EEEecCC Confidence 1111111 No 95 >protein:vir:97148 Length: 324 # NCBI annotation: ORF010 # Family: family:all:507 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239726;genbank:gi:66394880;genbank:GeneID:5130881 Probab=67.63 E-value=0.25 Score=23.89 Aligned_cols=300 Identities=11% Similarity=0.064 Sum_probs=118.9 Q ss_pred cccchhhhhhhhhccchHHHHHHHHHHhhhhhhccccc-cccccccccccccceehhhhHHHhhhHhhhhceeeecCCCc Q lcl|NC_015286. 22 IEDTHKRGVVAQLLENQEKAITEEASVLNETLQTTGYT-GASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGP 100 (457) Q Consensus 22 i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~-~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGP 100 (457) .+..++.+...+-+.+-.+.. ...... ..++++++..--....-.+++.+....+..+++-+.||++. T Consensus 1 ~~~~~~~~~~~~~f~~~~~~~-----------~~~~a~~~~~~~~~~~~iP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~ 69 (324) T protein:vir:97 1 MEQTQKLKLNLQHFASNNVKP-----------QVFNPDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGT 69 (324) T ss_pred CccchhHHHHHHHHHHhhhhh-----------hhhccccccccCCCcceechhHHHHHHHHHHhhcchhhhcceeeccCC Confidence 111111111111111111000 000111 11112222211111222356667778888999999999886 Q ss_pred ceeeeEeeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchh Q lcl|NC_015286. 101 TGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTA 180 (457) Q Consensus 101 TGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta 180 (457) +--|- +... ++ +| . ..+ T Consensus 70 ~~~ip----~~~~--~~------~a-------~--------------------------------------------~v~ 86 (324) T protein:vir:97 70 EKKFT----FWAD--KP------GA-------Y--------------------------------------------WVG 86 (324) T ss_pred ceEEE----EEec--Cc------ce-------e--------------------------------------------Eec Confidence 63321 1110 00 00 0 000 Q ss_pred hhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhhe Q lcl|NC_015286. 181 TAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTN 260 (457) Q Consensus 181 ~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tv 260 (457) ++|... .....|.++.|+..|..+ -..+|-||.+|-. .|.+++|.+-|+..|...+++.||.---+. T Consensus 87 Eg~~~~--~~~~~f~~v~~~~~k~~~-------~~~is~ell~ds~----~~l~~~i~~~l~~aia~~~d~a~l~G~g~~ 153 (324) T protein:vir:97 87 EGQKIE--TSKATWVNATMRAFKLGV-------ILPVTKEFLNYTY----SQFFEEMKPMIAEAFYKKFDEAGILNQGNN 153 (324) T ss_pred cCcccc--ccccceeEEEEeeEEEEE-------eehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHhhccCCCC Confidence 111111 112245555555555444 4459999999863 578999999999999999999998642111 Q ss_pred eeeeeccccccceeEeecccc----chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecc Q lcl|NC_015286. 261 AVKGAQNNTATAGVFDLDVDS----NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSP 336 (457) Q Consensus 261 A~rgk~~~v~~~Gv~Dl~~~~----~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~ 336 (457) ....|++...... .+....+....+...+.. -.+....+|+|+.....|.. +.- T Consensus 154 --------~~~~gi~~~~~~~~~~~~~~~~~~~i~~~~~~l~~---------~~~~~~~~v~n~~~~~~L~~---lkd-- 211 (324) T protein:vir:97 154 --------PFGKSIAQSIEKTNKVIKGDFTQDNIIDLEALLED---------DELEANAFISKTQNRSLLRK---IVD-- 211 (324) T ss_pred --------ccCccccccccccceeccccCCHHHHHHHHHhhhh---------ccCCCCEEEEcHHHHHHHHH---hhc-- Confidence 1112222111100 011111223333333321 22334457899999988775 211 Q ss_pred cccccccccccccCCceEEEEecCceEEEEecccccccccceEEEE--------EecCCCccc--eeEEccccccccccc Q lcl|NC_015286. 337 ALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAG--------YKGTSPYDA--GLFYCPYVPLQQVRA 406 (457) Q Consensus 337 ~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG--------~KG~~~~d~--glfyaPYv~~~~~~~ 406 (457) .+|..-. .+.. .|+|. +++|++.+-.+ .+...+++| ..++-..+- -.+...+...+.... T Consensus 212 -~~g~~~~--~~~~----~~tl~-G~PV~~~~~~~--~~~~~~~~gd~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~ 281 (324) T protein:vir:97 212 -PETKERI--YDRN----SDTLD-GLPVVNLKSSN--LKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTPV 281 (324) T ss_pred -CCCceee--cCCC----Ccccc-ceeeEeecCCC--CCcceEEEEecccEEEEEecCcEEEEeecccccccccccccch Confidence 1111111 1111 24554 45777654322 112223333 322211100 000000000000000 Q ss_pred cCCccccceeeeeeeeee-eeccccc--------cccCccccc Q lcl|NC_015286. 407 INPDTFQPKIGFKTRYGM-VSNPFAQ--------GLTQGSGAL 440 (457) Q Consensus 407 ~Dp~s~qP~~g~~tRY~l-~~nP~~~--------~~~~~~~~~ 440 (457) -.-..-|=.+=+..||+. ..||-+- +.+..++.+ T Consensus 282 ~~f~~d~~~~r~~~r~d~~v~~~~a~~~l~~~~~~~~~~~~~~ 324 (324) T protein:vir:97 282 NLFEQDMVALRATMHVALHIADDKAFAKLVPADKKTDSVPGEV 324 (324) T ss_pred hhhhcCcEEEEEEEEeccEEecccceEEEEeccCCCCCCCCCC Confidence 000001122223456765 5555432 223334444 No 96 >protein:vir:78830 Length: 324 # NCBI annotation: major head protein # Family: family:all:507 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285361;genbank:gi:148717889;genbank:GeneID:5246961 Probab=66.00 E-value=0.27 Score=23.66 Aligned_cols=298 Identities=10% Similarity=0.053 Sum_probs=120.9 Q ss_pred hccchHHHHHHHHHHhhhhhhccccccccc---cccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeee Q lcl|NC_015286. 34 LLENQEKAITEEASVLNETLQTTGYTGAST---ATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTN 110 (457) Q Consensus 34 ~~~n~~~~~~~~~~~~~e~~~~~g~~~~st---~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsr 110 (457) .-++|+...+ ...+.+.....+-+.+..+ .+++..--....-.+++.+.......+++-+-||++++--|.-.. T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~iP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~~~~p~~~-- 77 (324) T protein:vir:78 1 MEQTQKLKLN-LQHFASNNVKPQVFNPDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWA-- 77 (324) T ss_pred CCcchhhhHH-HHHHHHHhhhhhhhccccccccCcCccccchhHHHHHHHHHHhhchhhhhcceeeccCCceEEEEEe-- Confidence 1111111110 1111111111111111111 111111111222236666667778888999999988753322110 Q ss_pred ecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCC Q lcl|NC_015286. 111 YGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSS 190 (457) Q Consensus 111 Y~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~ 190 (457) .++ ++ .+ .+| T Consensus 78 ----~~~------~a-------~~----------------------------------------------v~E------- 87 (324) T protein:vir:78 78 ----DKP------GA-------YW----------------------------------------------VGE------- 87 (324) T ss_pred ----cCc------ce-------eE----------------------------------------------ecC------- Confidence 000 00 00 011 Q ss_pred CcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccc Q lcl|NC_015286. 191 NTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTA 270 (457) Q Consensus 191 ~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~ 270 (457) +..+++...+++++++..+.-+.-..+|-||.+|-. .|.+++|.+-|+..|...|++-+|.---+. -. T Consensus 88 g~~~~~~~~~~~~v~~~~~k~~~~~~is~ell~ds~----~~l~~~i~~~la~ai~~~~d~a~l~G~g~~--------~~ 155 (324) T protein:vir:78 88 GQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY----SQFFEEMKPMIAEAFYKKFDEAGILNQGNN--------PF 155 (324) T ss_pred CccccccccceeEEEEeeEEEEEeehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHhccCCCC--------Cc Confidence 012233333445555555555555669999999864 578999999999999999999998642111 11 Q ss_pred cceeEeeccc----cchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccc Q lcl|NC_015286. 271 TAGVFDLDVD----SNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTG 346 (457) Q Consensus 271 ~~Gv~Dl~~~----~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~ 346 (457) ..|+...... ..+....+....+..++. ......+.+|+|+.....|...- - .+|..-. T Consensus 156 ~~gi~~~~~~~~~~~~~~~t~~~i~~~~~~l~---------~~~~~~~~~vmn~~~~~~L~~l~---d---~~G~~~~-- 218 (324) T protein:vir:78 156 GKSIAQSIEKTNKVIKGDFTQDNIIDLEALLE---------DDELEANAFISKTQNRSLLRKIV---D---PETKERI-- 218 (324) T ss_pred CccccccccccceeccccccHHHHHHHHHhhh---------hccCCCCEEEEcHHHHHHHHHhh---c---cCCCeee-- Confidence 1222221110 011111222333433332 12344556899999998886521 1 1111111 Q ss_pred cccCCceEEEEecCceEEEEecccccccccceEEEE--------EecCCCccce--eEEccccccccccccCCcccccee Q lcl|NC_015286. 347 VDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAG--------YKGTSPYDAG--LFYCPYVPLQQVRAINPDTFQPKI 416 (457) Q Consensus 347 ~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG--------~KG~~~~d~g--lfyaPYv~~~~~~~~Dp~s~qP~~ 416 (457) .+... ++|. +++|++++..+ .+..-+++| ..++...+-+ .+...+...+....-.=.+-|=.+ T Consensus 219 ~~~~~----~~l~-G~PV~~~~~~~--~~~~~~~~gd~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~f~~d~~~~ 291 (324) T protein:vir:78 219 YDRNS----DSLD-GLPVVNLKSSN--LKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTPVNLFEQDMVAL 291 (324) T ss_pred cCCCC----Cccc-ceeeEeeCCCC--CCcceEEEEecceEEEEEecCcEEEEeecccccccccccccchhhhhcCcEEE Confidence 11222 3343 46777766433 222233333 3222111100 000000000000000000112222 Q ss_pred eeeeeeee-eeccccc--------cccCccccc Q lcl|NC_015286. 417 GFKTRYGM-VSNPFAQ--------GLTQGSGAL 440 (457) Q Consensus 417 g~~tRY~l-~~nP~~~--------~~~~~~~~~ 440 (457) =...||+. +.+|-+- +.+..++-+ T Consensus 292 r~~~r~d~~v~~~~A~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:78 292 RATMHVALHIADDKAFAKLVPADKRTDSVPGEV 324 (324) T ss_pred EEEEEEccEEecccceEEEecccccCCCCCCCC Confidence 23456666 4555421 112222333 No 97 >protein:vir:96392 Length: 324 # NCBI annotation: ORF011 # Family: family:all:507 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239648;genbank:gi:66395381;genbank:GeneID:5132868 Probab=66.00 E-value=0.27 Score=23.66 Aligned_cols=298 Identities=10% Similarity=0.053 Sum_probs=120.9 Q ss_pred hccchHHHHHHHHHHhhhhhhccccccccc---cccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeee Q lcl|NC_015286. 34 LLENQEKAITEEASVLNETLQTTGYTGAST---ATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTN 110 (457) Q Consensus 34 ~~~n~~~~~~~~~~~~~e~~~~~g~~~~st---~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsr 110 (457) .-++|+...+ ...+.+.....+-+.+..+ .+++..--....-.+++.+.......+++-+-||++++--|.-.. T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~iP~~~~~~ii~~~~~~s~l~~l~~~~~~~~~~~~~p~~~-- 77 (324) T protein:vir:96 1 MEQTQKLKLN-LQHFASNNVKPQVFNPDNVMMHEKKDGTLMNEFTTPILQEVMENSKIMQLGKYEPMEGTEKKFTFWA-- 77 (324) T ss_pred CCcchhhhHH-HHHHHHHhhhhhhhccccccccCcCccccchhHHHHHHHHHHhhchhhhhcceeeccCCceEEEEEe-- Confidence 1111111110 1111111111111111111 111111111222236666667778888999999988753322110 Q ss_pred ecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCC Q lcl|NC_015286. 111 YGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSS 190 (457) Q Consensus 111 Y~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~ 190 (457) .++ ++ .+ .+| T Consensus 78 ----~~~------~a-------~~----------------------------------------------v~E------- 87 (324) T protein:vir:96 78 ----DKP------GA-------YW----------------------------------------------VGE------- 87 (324) T ss_pred ----cCc------ce-------eE----------------------------------------------ecC------- Confidence 000 00 00 011 Q ss_pred CcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccc Q lcl|NC_015286. 191 NTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTA 270 (457) Q Consensus 191 ~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~ 270 (457) +..+++...+++++++..+.-+.-..+|-||.+|-. .|.+++|.+-|+..|...|++-+|.---+. -. T Consensus 88 g~~~~~~~~~~~~v~~~~~k~~~~~~is~ell~ds~----~~l~~~i~~~la~ai~~~~d~a~l~G~g~~--------~~ 155 (324) T protein:vir:96 88 GQKIETSKATWVNATMRAFKLGVILPVTKEFLNYTY----SQFFEEMKPMIAEAFYKKFDEAGILNQGNN--------PF 155 (324) T ss_pred CccccccccceeEEEEeeEEEEEeehhhHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHhccCCCC--------Cc Confidence 012233333445555555555555669999999864 578999999999999999999998642111 11 Q ss_pred cceeEeeccc----cchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccc Q lcl|NC_015286. 271 TAGVFDLDVD----SNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTG 346 (457) Q Consensus 271 ~~Gv~Dl~~~----~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~ 346 (457) ..|+...... ..+....+....+..++. ......+.+|+|+.....|...- - .+|..-. T Consensus 156 ~~gi~~~~~~~~~~~~~~~t~~~i~~~~~~l~---------~~~~~~~~~vmn~~~~~~L~~l~---d---~~G~~~~-- 218 (324) T protein:vir:96 156 GKSIAQSIEKTNKVIKGDFTQDNIIDLEALLE---------DDELEANAFISKTQNRSLLRKIV---D---PETKERI-- 218 (324) T ss_pred CccccccccccceeccccccHHHHHHHHHhhh---------hccCCCCEEEEcHHHHHHHHHhh---c---cCCCeee-- Confidence 1222221110 011111222333433332 12344556899999998886521 1 1111111 Q ss_pred cccCCceEEEEecCceEEEEecccccccccceEEEE--------EecCCCccce--eEEccccccccccccCCcccccee Q lcl|NC_015286. 347 VDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAG--------YKGTSPYDAG--LFYCPYVPLQQVRAINPDTFQPKI 416 (457) Q Consensus 347 ~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG--------~KG~~~~d~g--lfyaPYv~~~~~~~~Dp~s~qP~~ 416 (457) .+... ++|. +++|++++..+ .+..-+++| ..++...+-+ .+...+...+....-.=.+-|=.+ T Consensus 219 ~~~~~----~~l~-G~PV~~~~~~~--~~~~~~~~gd~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~f~~d~~~~ 291 (324) T protein:vir:96 219 YDRNS----DSLD-GLPVVNLKSSN--LKRGELITGDFDKLIYGIPQLIEYKIDETAQLSTVKNEDGTPVNLFEQDMVAL 291 (324) T ss_pred cCCCC----Cccc-ceeeEeeCCCC--CCcceEEEEecceEEEEEecCcEEEEeecccccccccccccchhhhhcCcEEE Confidence 11222 3343 46777766433 222233333 3222111100 000000000000000000112222 Q ss_pred eeeeeeee-eeccccc--------cccCccccc Q lcl|NC_015286. 417 GFKTRYGM-VSNPFAQ--------GLTQGSGAL 440 (457) Q Consensus 417 g~~tRY~l-~~nP~~~--------~~~~~~~~~ 440 (457) =...||+. +.+|-+- +.+..++-+ T Consensus 292 r~~~r~d~~v~~~~A~~~l~~a~~~~~~~~~~~ 324 (324) T protein:vir:96 292 RATMHVALHIADDKAFAKLVPADKRTDSVPGEV 324 (324) T ss_pred EEEEEEccEEecccceEEEecccccCCCCCCCC Confidence 23456666 4555421 112222333 No 98 >protein:vir:1084 Length: 437 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076738;genbank:gi:13095848;genbank:GeneID:920418 Probab=64.55 E-value=0.3 Score=23.47 Aligned_cols=312 Identities=13% Similarity=0.109 Sum_probs=112.9 Q ss_pred CchHHHHH----------HhhHhhccccccccccchhhhhhhhhccchHHHHHHHHHH---------------------- Q lcl|NC_015286. 1 MSLQQLQE----------KWAPVLNHESLPEIEDTHKRGVVAQLLENQEKAITEEASV---------------------- 48 (457) Q Consensus 1 ~~~~~l~~----------~w~~~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~---------------------- 48 (457) -..+++.+ +-....+.+...+. ..-.....+.+.+...+..+. T Consensus 68 ~~~e~~~~~~~~~~~e~~~~~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (437) T protein:vir:10 68 LKVEEKRDDSDLVAPELEENSADNEEDDPEKL-----KTETKSEAEKDKKTVKDEEKRDAGGLQDMKLKVGGEIADKKVT 142 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhhh Confidence 00000000 00000000000000 000011111111111111000 Q ss_pred -hhhhhhcccccc--ccc-cccccccccce-ehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccc Q lcl|NC_015286. 49 -LNETLQTTGYTG--AST-ATGPVAGFDPV-LISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYD 123 (457) Q Consensus 49 -~~e~~~~~g~~~--~st-~tg~i~~~~P~-Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~ 123 (457) +.+......... ..+ +.+.. .-|. +...++.........+++.+.||+.+.+-+--.+.. ++. T Consensus 143 ~~~~~~~~~e~~~~~~~~~~~~g~--lvp~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~----- 210 (437) T protein:vir:10 143 AFADYLKTGEVRDVTGIALKDGKV--IIPETILTPEKEVHQFPRLGSLVRTESVTTTTGKLPIFNNS-----TDL----- 210 (437) T ss_pred hhHHHHHhhhhhhhhhcccccccc--cchHHHHHHHHHhhhhhhhhhcceeEeeccCceeeEEeecc-----ccc----- Confidence 000000000000 001 11111 0111 111122111222345667888887776544333211 000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEE Q lcl|NC_015286. 124 EAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEK 203 (457) Q Consensus 124 EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK 203 (457) -++ . ...+... ...+..|.++.|.+.| T Consensus 211 ~~~----------------------------------------------~------~e~~~~~-e~~~~~~~~v~~~~~k 237 (437) T protein:vir:10 211 LTA----------------------------------------------H------TEYGQTT-KNATPVITPILWDLKT 237 (437) T ss_pred ccc----------------------------------------------c------ccccccc-ccccccceeeeeehhh Confidence 000 0 0000000 1122356666666666 Q ss_pred EEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccch Q lcl|NC_015286. 204 VTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNG 283 (457) Q Consensus 204 ~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~g 283 (457) ..+ -..+|-||.+|- .+|.+++|.+.|+..|..-+|..||.-+-+ ++...+++....|+. T Consensus 238 ~~~-------~~~is~ell~ds----~~~~~~~i~~~l~~~~~~~~~~~i~~g~g~----~~~~~~~~~~~~~~~----- 297 (437) T protein:vir:10 238 YTG-------GYVFSQELISDS----SYDWQAELQSRLIELRDNTDDSLIITALTD----GIKKTTSTYLLGDLK----- 297 (437) T ss_pred eee-------ehhhhHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----cccccccccchhhHH----- Confidence 543 457899999984 357888999999999999999999886532 122222222221110 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceE Q lcl|NC_015286. 284 RWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIK 363 (457) Q Consensus 284 rw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~ 363 (457) . .+-+.+... . +..+ .+||++.....|... . ..+|.--+ ..+.+. -..++|.| ++ T Consensus 298 ----~---~~~~~l~~~-----~---~~~~-~~~~~~~~~~~l~~l---k---d~~g~~~~-~~~~~~-~~~~~l~G-~p 352 (437) T protein:vir:10 298 ----K---VLNVTLKPQ-----D---SAAA-SIVMSQSAYNLFDMA---T---DAMGRPLL-QPNVTA-ATGYTLLG-KT 352 (437) T ss_pred ----H---HHHhhhhhh-----h---hcCC-EEEEcHHHHHHHHHh---h---ccCCCeee-ccCccC-CCCccccc-ce Confidence 0 010111111 1 1222 468899888777652 1 11111000 011111 11346655 56 Q ss_pred EEEecc--cccccccceEEEEEecCCCccceeEEcccccc------cccc--cc-CCccccceeeeeeeeee-eeccccc Q lcl|NC_015286. 364 VYVDPY--SANVADKHYYVAGYKGTSPYDAGLFYCPYVPL------QQVR--AI-NPDTFQPKIGFKTRYGM-VSNPFAQ 431 (457) Q Consensus 364 vy~D~y--~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~------~~~~--~~-Dp~s~qP~~g~~tRY~l-~~nP~~~ 431 (457) |++... .|+....++. +||+.+-.. .... .. +-+.++..+.+..||+. +++|-+- T Consensus 353 v~~~~~~~~~~~~~~~~~-------------~~~gd~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~a~ 419 (437) T protein:vir:10 353 VVIVDDKLFPSASAGDVN-------------IVVAPLKKAVINFKLTEITGQFQDTYDIWYKQLGIFLRQNVVQASKDLI 419 (437) T ss_pred eEEecccccCCcCCCceE-------------EEEeeccccEEEEeeeceEEEEecccccccceeeEEEEEccEEecccce Confidence 655322 1221111221 222222110 0010 00 23344556666679887 6666532 Q ss_pred cc---------cCccccc Q lcl|NC_015286. 432 GL---------TQGSGAL 440 (457) Q Consensus 432 ~~---------~~~~~~~ 440 (457) .. ...++.+ T Consensus 420 ~~l~~~~~~~~~~~~~~~ 437 (437) T protein:vir:10 420 VNLTGKLKAVTVVQSTAV 437 (437) T ss_pred EEEEeeccccccCCCCCC Confidence 11 1112222 No 99 >protein:vir:1268 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:21 # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690760;genbank:gi:22855000;genbank:GeneID:955203 Probab=64.36 E-value=0.3 Score=23.44 Aligned_cols=319 Identities=14% Similarity=0.037 Sum_probs=121.6 Q ss_pred CchHHHHHHhhHhhcc--------------ccccccccchhhhhhhhhccchHHHHHHHHHHhh-h-----------hhh Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNH--------------ESLPEIEDTHKRGVVAQLLENQEKAITEEASVLN-E-----------TLQ 54 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~--------------~~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~-e-----------~~~ 54 (457) =..+.|.++...+-+. ....+......+......-+.+.+..+...+.+. . ... T Consensus 40 ~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 119 (397) T protein:vir:12 40 DEVKQLKNQIELMTEGRSLDVPDLPGGVNFVPEQERNPEGQRSQGQGNEERQQQYSKAFLKGLRGKRLTDEERDLLDSPE 119 (397) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccchhhHHHHHHHHHHHHHHhccCCcHHHHHHHhhhh Confidence 0011222222211100 0000000000000000011111111111111110 0 000 Q ss_pred ccccccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccc Q lcl|NC_015286. 55 TTGYTGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGF 134 (457) Q Consensus 55 ~~g~~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~f 134 (457) .....+..+++|.+.--....-.+++...+..+..+++.+.||+++.|-+--.|. .+.. .+ .+ T Consensus 120 ~~a~~~~~~~~gg~lvP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~a-------~~ 182 (397) T protein:vir:12 120 FRAMSGINDEDGGILIPEDIGRQIHEFKRQFEPLEQYVTVEPVTTRSGTRLLEKN-----ADMV-----PF-------SP 182 (397) T ss_pred hhhccccccccCcccCchhHHHHHHHhhhhhhhHHhhcceeeccCCceeEEEEEe-----cCCc-----ce-------ee Confidence 0011111222232211111222355555577778899999999998875432221 1100 00 00 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeeccccc Q lcl|NC_015286. 135 SGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALK 214 (457) Q Consensus 135 SG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLK 214 (457) - .+++... ......|.++.|+..|..+- T Consensus 183 v--------------------------------------------~Eg~~~~-~~~~~~~~~v~~~~~k~~~~------- 210 (397) T protein:vir:12 183 V--------------------------------------------EELGNLP-EIDQPRFTKVSYSIIDYGGI------- 210 (397) T ss_pred e--------------------------------------------ccccccc-ccccccceeEEeeheeeEee------- Confidence 0 0000000 01123466666666666655 Q ss_pred ceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHH Q lcl|NC_015286. 215 AEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLL 294 (457) Q Consensus 215 AEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~ 294 (457) ..+|-||.+|-- +|.++.|.+.|+..|...+|+-||.-.-+ ....|+..++ ....++ T Consensus 211 ~~is~e~l~ds~----~~l~~~i~~~l~~~~~~~~d~~il~G~g~---------~~~~g~~~~~----------~i~~~~ 267 (397) T protein:vir:12 211 MTLSNSMLNDSD----QAIMTYVAKWFAKKSVVTRNNLILAAIAS---------LKKVDIDGLD----------GIKKAL 267 (397) T ss_pred ehhhHHHHhhch----HHHHHHHHHHHHHHHHHHHHHHHHhcccc---------ccccccccHH----------HHHHHH Confidence 458999998854 46788999999999999999988864321 1234444321 112222 Q ss_pred H-HHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEe-ccccc Q lcl|NC_015286. 295 F-QIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVD-PYSAN 372 (457) Q Consensus 295 ~-qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D-~y~~~ 372 (457) + .+. . -...+..++|++.....|.. +. ..+|.- ....+.+. ..-++|.| ++|++. ...+. T Consensus 268 ~~~l~-~--------~~~~~a~~~~n~~~~~~L~~---lk---d~~G~~-l~~~~~~~-g~~~~l~G-~pv~~~~~~~~~ 329 (397) T protein:vir:12 268 NVTLD-P--------MVAPGSIVLTNQDGYDWLDT---LK---DGTGRY-LLQPDPTN-PTKKLLDG-RPVVPFTNRVLK 329 (397) T ss_pred hhccc-h--------hhhCCCEEEEcHHHHHHHHH---hh---ccCCce-eecccccC-CCCccccc-eeeEEecccccc Confidence 1 221 1 11233457889988887765 21 111110 00111111 12245644 577653 22222 Q ss_pred cccc----------ceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccccCcccc Q lcl|NC_015286. 373 VADK----------HYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGA 439 (457) Q Consensus 373 ~~~~----------dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~ 439 (457) .... +|++++.+.....+ +.++ ...+-.+-+-.+-...|++. +.||-+-..-.-.+. T Consensus 330 ~~~~~~~~~~gd~~~~~~~~~~~~~~i~----~~~~------~~~~f~~~~~~~r~~~r~d~~~~~~~a~~~~~~t~~ 397 (397) T protein:vir:12 330 TQKGKAPLIIGNLKEAIVLFDREQQSIA----STDT------GAGAFETNSTKVRGIEREDVRKWDEDAVVFGQITVE 397 (397) T ss_pred cCCCccEEEEEehhceEEEEeecceEEE----Eecc------ccchhhcCceEEEEEEeeccEEecccceEEEEEeeC Confidence 1111 11222211111100 0000 00011133445556677776 556543211100000 No 100 >protein:vir:94673 Length: 419 # NCBI annotation: major capsid protein # Family: family:all:585 # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579208;genbank:gi:93007444;genbank:GeneID:5076792 Probab=63.47 E-value=0.32 Score=23.32 Aligned_cols=338 Identities=13% Similarity=0.030 Sum_probs=120.1 Q ss_pred Cc--hHHHHHHhhHhhccc-------------------ccc---ccccchhhhhhhhhccchHHHHHHHH---------- Q lcl|NC_015286. 1 MS--LQQLQEKWAPVLNHE-------------------SLP---EIEDTHKRGVVAQLLENQEKAITEEA---------- 46 (457) Q Consensus 1 ~~--~~~l~~~w~~~l~~~-------------------~~~---~i~~~~~~~v~~~~~~n~~~~~~~~~---------- 46 (457) +. .+.+.++...-++.- ... +......+.+ ...+.+- ..+.+.. T Consensus 31 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 108 (419) T protein:vir:94 31 IVAEARGLADALQAESDRAAARAALLRTAPPAPKGPADGGTPLTPAEAGTFRSL-AQRFADS-DGLREYRARDKRGQFQV 108 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccch-hhhhhhH-HHHHHHHHhhhhhhhhH Confidence 00 011111111100000 000 0000000000 0000000 0000000 Q ss_pred ---HHhhhhhhccccccccccccccccccceehhhh--HHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCc Q lcl|NC_015286. 47 ---SVLNETLQTTGYTGASTATGPVAGFDPVLISLI--RRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASG 121 (457) Q Consensus 47 ---~~~~e~~~~~g~~~~st~tg~i~~~~P~Lv~l~--RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~ 121 (457) .............+..+ +.+....-|.+++=. .+....+...+++.+.||++++.-+ +|.. ....+ T Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~--~~~~~---- 179 (419) T protein:vir:94 109 EMRDIDPNRLLSRDAPAGTI-TNPNVPHLPQLVPGIVPTTPDLPLLVADLLDQQNADYNVLEY--IRDT--SGTAG---- 179 (419) T ss_pred HHHHHHHHHhhccccccccc-cCCcccccchhhhHHHHHHHhhhhhhhhcceeeeccCCceee--eeec--ccccc---- Confidence 00000000011111111 111122233333311 1112234568899999998875322 2210 00000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEE Q lcl|NC_015286. 122 YDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSI 201 (457) Q Consensus 122 ~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsI 201 (457) ...+ .+ . ..-.+| +..+++...++ T Consensus 180 -----------~~~~------------------~~------------~--------a~~v~E-------g~~~~~~~~~~ 203 (419) T protein:vir:94 180 -----------AGST------------------WN------------K--------AAVVPE-------GTAKPQSTLSF 203 (419) T ss_pred -----------cccc------------------Cc------------c--------cceecC-------Cccccccccce Confidence 0000 00 0 000111 11334444445 Q ss_pred EEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc-ccceeEeeccc Q lcl|NC_015286. 202 EKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT-ATAGVFDLDVD 280 (457) Q Consensus 202 eK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v-~~~Gv~Dl~~~ 280 (457) ++++..+|.=+-...+|-||.||.- +.+++|.+-|+..|...+|+.||.- .-.++..|+ ...|+...... T Consensus 204 ~~i~~~~~k~~~~~~is~ell~d~~-----~l~~~i~~~la~a~~~~~d~aii~G----~G~~~p~Gi~~~~~~~~~~~~ 274 (419) T protein:vir:94 204 DTITTTLKTVAHWLPITRQAADDNS-----QLMGYIQGRLTYGLRFLRDRQLLNG----NGSTEMQGILTTPGIGTYQQP 274 (419) T ss_pred eeEEeeeeeEEEeehhhHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHhc----cCcccccceeccccccccccc Confidence 5555555555556689999999952 3689999999999999999999852 001111121 11111111000 Q ss_pred c-----chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEE Q lcl|NC_015286. 281 S-----NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLV 355 (457) Q Consensus 281 ~-----~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~ 355 (457) . .+--..+....+++.+. ...+..+.+||++.....|.. ..+ + . .+ ...... +-..... T Consensus 275 ~~~~~~t~~~~~~~l~~~~~~~~---------~~~~~~~~~v~n~~~~~~l~~--~k~-~-~-~~-~~~~~~-~~~~~~~ 338 (419) T protein:vir:94 275 KPTAPATDEPPLVDIRRAKTVAE---------IAGFPPDGVVVHPQDWESIEL--DQA-P-G-SG-VFRVIA-NVQGEAT 338 (419) T ss_pred ccccccccchhHHHHHHHHHhhh---------hccCCCCEEEEcHHHHHHHHH--Hhh-c-C-CC-ceeecC-CcccCCC Confidence 0 00000111222222221 223456789999998877754 111 0 0 00 000000 1111223 Q ss_pred EEecCceEEEEecccccccccceEEEE-EecC-C---CccceeEEccccccccccccCCccccceeeeeeeeee-eeccc Q lcl|NC_015286. 356 GTLNGRIKVYVDPYSANVADKHYYVAG-YKGT-S---PYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPF 429 (457) Q Consensus 356 G~l~~~~~vy~D~y~~~~~~~dY~~vG-~KG~-~---~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~ 429 (457) ++|. +++|+++...|.+ + +++| ++-. . ...-.+-..++.... =..-+=.+=+..|++. +.+|- T Consensus 339 ~~l~-G~pV~~~~~~~~~---~-~~~gd~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~~~~r~~~r~d~~v~~~~ 407 (419) T protein:vir:94 339 PRIW-GLNVVSTVAIAQG---T-ALVGGFRQGATLWSRQGITVLMTDSHADF------FTANTLVILAEFRANLAVYQPK 407 (419) T ss_pred cccc-ceeeEEcCCCCCc---c-EEEeeccceEEEEEecceEEEEeccccch------hhcCcEEEEEEEeeccEEeccc Confidence 4564 4789998876632 2 2333 1200 0 000111111111100 0122233445567776 55554 Q ss_pred cccccCcccccc Q lcl|NC_015286. 430 AQGLTQGSGALT 441 (457) Q Consensus 430 ~~~~~~~~~~~~ 441 (457) +-..-.-.+... T Consensus 408 a~~~~~~~aa~~ 419 (419) T protein:vir:94 408 AFVRVTFAAATT 419 (419) T ss_pred cEEEEEeccCCC Confidence 321111111111 No 101 >protein:vir:96833 Length: 275 # NCBI annotation: ORF015 # Family: family:all:522 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240157;genbank:gi:66395822;genbank:GeneID:5133174 Probab=60.89 E-value=0.36 Score=22.99 Aligned_cols=260 Identities=10% Similarity=0.016 Sum_probs=120.1 Q ss_pred cCCcccCcccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccchhhh Q lcl|NC_015286. 114 ERDPAASGYDEAFFNEPNA-----------GFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATA 182 (457) Q Consensus 114 ~~g~~~~~~~EAlfnEa~t-----------~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~a 182 (457) ......+.-..-+..|--+ .|++..... ....|. .|+.. +...--....+ T Consensus 1 ~~~~~~T~l~d~i~PEv~~~~v~~~~~~~~~~~~~~~~~--------~~l~g~---------~G~tv--~iP~~~~ig~a 61 (275) T protein:vir:96 1 MALENMTKLANMVNPEVLAPMMQAELDKKLKFAQFADID--------NTLVGQ---------PGNTI--TFPAFVYSGDA 61 (275) T ss_pred CCCcccchhhhhhchHHHHHHHHHHHHHhhhhcccceec--------ccccCC---------CCCEE--EeeeeccCCcc Confidence 1111111111111122111 111110000 000000 01000 00000011233 Q ss_pred hccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHH-hhCCChhHHHHHHHHHHHHHHhhHHHHhhhhhee Q lcl|NC_015286. 183 EALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKA-IHGLDAEQELANILSTEILAEINREVVRTIYTNA 261 (457) Q Consensus 183 EaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkA-iHGLDAE~ELanILStEImlEINReIi~~l~tvA 261 (457) |.+.++. .....++.+ ...+++.|-|.-.-+++ |+-+ .-+-|.-.|..+-++..|+.+++.+++..|.+.. T Consensus 62 ~~~~~g~-~i~~~~lt~--~~~~~~i~~~~~~~~i~-----D~~~~~~~~d~~~~~~~~~a~~~a~~~d~~ll~~l~~a~ 133 (275) T protein:vir:96 62 KVVPEGE-EIPIDLIET--KKRQATIRKIGKGTVLT-----DEALLSGYGDPKGEAVRQHGLAIANKVDNDVLEALQGAT 133 (275) T ss_pred ccccCCC-Ccchhhccc--ceeeEEeehhccccccc-----HHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 3333322 234455554 44555556654443443 3333 2356888999999999999999999998876533 Q ss_pred eeeeccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccc Q lcl|NC_015286. 262 VKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGN 341 (457) Q Consensus 262 ~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~ 341 (457) ... ....++ .+.+-..+.++..| -..+++++++|.+++.|.-..-..|.+..... T Consensus 134 ~~~------~~~~~~----------~d~i~dA~~~lgd~---------~~~~~~ivv~p~~~~~L~k~~~~~f~~~~~~g 188 (275) T protein:vir:96 134 LKV------EADITK----------LAGLQTAIDKFNDE---------DLEPMVLFVNPLDAGKLRASATDNFTRATLLG 188 (275) T ss_pred ccc------cccccC----------HHHHHHHHHHhccc---------cCCccEEEeCHHHHHHHHhccccccccccccc Confidence 221 111111 22222333444322 14688999999999888654333454433221 Q ss_pred ccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEcccccccccccc-CCccccceeeeee Q lcl|NC_015286. 342 NALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAI-NPDTFQPKIGFKT 420 (457) Q Consensus 342 ~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~-Dp~s~qP~~g~~t 420 (457) .....+...|++ .+++||+|-..|+.. = +++| +|.-. |+.. ....+.+. |+++++=.+--.. T Consensus 189 -----~~~~~~G~ig~~-~G~~Vi~s~~~p~~t--~-~i~~-~gA~~-----~~~~--~~~~vE~~Rd~~~~~d~i~~~~ 251 (275) T protein:vir:96 189 -----DNVIVKGAFGEA-LGAIIVRSNKIKEGE--A-ILAK-RGAVK-----LITK--RDFFLETERHASHKSTALFSDK 251 (275) T ss_pred -----ccceecccccee-cCeeEEEeCCCCcce--E-EEEe-cccee-----eeec--CCcccccccchhhcCcEEEEeE Confidence 112234457887 568999997655211 1 2222 12111 1111 11112222 9999999999999 Q ss_pred eeee-eeccccc-cccCccccccc Q lcl|NC_015286. 421 RYGM-VSNPFAQ-GLTQGSGALTA 442 (457) Q Consensus 421 RY~l-~~nP~~~-~~~~~~~~~~~ 442 (457) +||+ +.||-.. .++-.++.+-- T Consensus 252 ~y~~~~~~~~~vv~~t~~~~~~~~ 275 (275) T protein:vir:96 252 HYVAYLYDESKVVKITKSASGLGV 275 (275) T ss_pred EEEEEEEcCccEEEEEecccccCC Confidence 9997 7788522 22333333322 No 102 >protein:vir:101650 Length: 497 # NCBI annotation: gp13 # Family: family:all:585 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654768;genbank:gi:109302766;genbank:GeneID:4156084 Probab=58.69 E-value=0.41 Score=22.72 Aligned_cols=346 Identities=13% Similarity=0.032 Sum_probs=131.3 Q ss_pred Cc-hHHHHHHhhHhhccccccc-cccchhhhhh-------------hhh---ccc------hHHHHHHHHHHhh----hh Q lcl|NC_015286. 1 MS-LQQLQEKWAPVLNHESLPE-IEDTHKRGVV-------------AQL---LEN------QEKAITEEASVLN----ET 52 (457) Q Consensus 1 ~~-~~~l~~~w~~~l~~~~~~~-i~~~~~~~v~-------------~~~---~~n------~~~~~~~~~~~~~----e~ 52 (457) +. .+++.++=.. ++.....+ .....+.... .+. ..+ ......+...... .. T Consensus 67 ~a~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (497) T protein:vir:10 67 DAAKDGLDNDIPE-VEVRNLKQIRKHLARAVIMNPELKNATSFEKGTKFDVSFNVSAKAADPGTAAAELMGAFADGETAP 145 (497) T ss_pred HHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHhhhHHHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhhhhhhH Confidence 11 0111111000 00000000 0000000000 000 000 0000000000000 00 Q ss_pred hhcccccccccccccc---ccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc Q lcl|NC_015286. 53 LQTTGYTGASTATGPV---AGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE 129 (457) Q Consensus 53 ~~~~g~~~~st~tg~i---~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE 129 (457) .........+++++.. ..+.+.++.+ ..+.....+++.+.||+++..- |-.. .+.. . ++ T Consensus 146 ~~~~~~~~~~~~~gg~~vp~~~~~~ii~~---~~~~~~i~~l~~~~~~~~~~~~-~~~~--~~~~-~-------~a---- 207 (497) T protein:vir:10 146 AAIGQNPFGSTGTFAPGILPTFLPGIVEQ---LFYELSLADLISSRPVTSPNLS-YLTE--SAAH-N-------NA---- 207 (497) T ss_pred HHHHhhhcccCcccccccchhhhHHHHHH---HHhhhhHHhhccccccCCCceE-EEEE--cCCC-C-------cc---- Confidence 0000011112222221 1233334444 4456678899999999987532 2211 1000 0 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEee Q lcl|NC_015286. 130 PNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTAR 209 (457) Q Consensus 130 a~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAK 209 (457) . -.+| +..++|...+++++++.+| T Consensus 208 -----------------------------------------~--------wv~E-------~~~~~~s~~~f~~i~~~~~ 231 (497) T protein:vir:10 208 -----------------------------------------A--------AVAE-------AGTYPFSSEEFARVYEQVG 231 (497) T ss_pred -----------------------------------------e--------eecc-------CcccccccccceeeEeeee Confidence 0 0011 1123444455577777777 Q ss_pred cccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhh--------hhheeeeeecccccc--------ce Q lcl|NC_015286. 210 ARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRT--------IYTNAVKGAQNNTAT--------AG 273 (457) Q Consensus 210 SRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~--------l~tvA~rgk~~~v~~--------~G 273 (457) .-+-...+|-||++|-- +.++.|.+-|+..|..-+|+.||.- |.+.+..+.+..... .+ T Consensus 232 k~a~~~~iS~ell~d~~-----~l~~~i~~~l~~~i~~~~d~~~l~G~G~~~p~Gil~~~~~~~~~~~~~~~~~~~~~~~ 306 (497) T protein:vir:10 232 KVANALTITDEGLRDAP-----ELFNFVQGRLLEGIQRKEEVQLLAGGGYPGVNGLLQRSTGFTASSASSLFGATSATVS 306 (497) T ss_pred eeEeecHhHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccccccccchhhhhhhhh Confidence 77777889999999942 3789999999999999999999862 222211111100000 01 Q ss_pred eEeeccccchhHHHH-----HHHHH----------------------HHHHHHHHHHHHHhcccCCccEEEEchhHHHHH Q lcl|NC_015286. 274 VFDLDVDSNGRWSVE-----KFKGL----------------------LFQIERDANAIGQQTRRGKGNILICSADVASAL 326 (457) Q Consensus 274 v~Dl~~~~~grw~~e-----~~k~l----------------------~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L 326 (457) ..++..+..+.|.+. ..+.. ...-...+-...+++....++.+|.++.....| T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vmn~~~~~~l 386 (497) T protein:vir:10 307 NVKFPADGTNGAFVGQDTVASLKYGRVVTGAAGSGSGVAGSYPTAAEIAENVFDAFVDIQLTLFQTPNAVVMNPRDWELL 386 (497) T ss_pred hhhhhcccccchhhhhhHHHHHHHHHhhhhhhhhccchhccccchhhhhhHHHHHHhhhhhhcccCCCeEEEchHHHHHH Confidence 111111111111110 00000 000012222334456666777788888877666 Q ss_pred hh----CCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEE-ec-CC----CccceeEEc Q lcl|NC_015286. 327 GM----AGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGY-KG-TS----PYDAGLFYC 396 (457) Q Consensus 327 ~~----sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~-KG-~~----~~d~glfya 396 (457) .. .|-.-+.|...+.. .......++|. +++|++.+..|. -++ ++|- +- .. ..+-.+-.. T Consensus 387 ~~lkd~~G~~i~~~~~~~~~------~~~~~~~~~l~-G~pV~~t~~~~~---~~~-~~Gd~~~~~~~i~~r~~~~v~~~ 455 (497) T protein:vir:10 387 RLTKDANGQYMGGNFFGNAY------GNPVNGGKNIW-GVPVVTTPLIPL---GTI-LVGHFAPSVIQTARREGVTMQMT 455 (497) T ss_pred HHhhcCCCceeccCcccccc------cccccCCceee-ceeeEecCCCCC---Cce-EEeecccceEEEEEecccEEEee Confidence 54 22211111111100 01111223554 478888877663 122 2221 10 00 001112222 Q ss_pred cccccccccccCCccccceeeeeeeeee-eeccccccccCccccccccc Q lcl|NC_015286. 397 PYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGALTANT 444 (457) Q Consensus 397 PYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~ 444 (457) ||... +=.+.|=.+=+..|+++ +.+|-+-..=+- .....++ T Consensus 456 ~~~~~------~f~~n~v~~r~~~r~~~~v~~p~A~~~l~~-~~~~~~~ 497 (497) T protein:vir:10 456 NSNGT------DFVDGKVTVRAEERLGLLVYRPSAFQLIQL-KKGATGS 497 (497) T ss_pred cccch------hhhcCcEEEEEEEeecceeeccccEEEEEe-cCCccCC Confidence 22110 11122334445678877 788874422110 0111122 No 103 >protein:vir:7855 Length: 497 # NCBI annotation: gp12 # Family: family:all:585 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817462;genbank:gi:29565891;genbank:GeneID:1259081 Probab=58.69 E-value=0.41 Score=22.72 Aligned_cols=346 Identities=13% Similarity=0.032 Sum_probs=131.3 Q ss_pred Cc-hHHHHHHhhHhhccccccc-cccchhhhhh-------------hhh---ccc------hHHHHHHHHHHhh----hh Q lcl|NC_015286. 1 MS-LQQLQEKWAPVLNHESLPE-IEDTHKRGVV-------------AQL---LEN------QEKAITEEASVLN----ET 52 (457) Q Consensus 1 ~~-~~~l~~~w~~~l~~~~~~~-i~~~~~~~v~-------------~~~---~~n------~~~~~~~~~~~~~----e~ 52 (457) +. .+++.++=.. ++.....+ .....+.... .+. ..+ ......+...... .. T Consensus 67 ~a~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (497) T protein:vir:78 67 DAAKDGLDNDIPE-VEVRNLKQIRKHLARAVIMNPELKNATSFEKGTKFDVSFNVSAKAADPGTAAAELMGAFADGETAP 145 (497) T ss_pred HHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHhhhHHHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhhhhhhH Confidence 11 0111111000 00000000 0000000000 000 000 0000000000000 00 Q ss_pred hhcccccccccccccc---ccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc Q lcl|NC_015286. 53 LQTTGYTGASTATGPV---AGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE 129 (457) Q Consensus 53 ~~~~g~~~~st~tg~i---~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE 129 (457) .........+++++.. ..+.+.++.+ ..+.....+++.+.||+++..- |-.. .+.. . ++ T Consensus 146 ~~~~~~~~~~~~~gg~~vp~~~~~~ii~~---~~~~~~i~~l~~~~~~~~~~~~-~~~~--~~~~-~-------~a---- 207 (497) T protein:vir:78 146 AAIGQNPFGSTGTFAPGILPTFLPGIVEQ---LFYELSLADLISSRPVTSPNLS-YLTE--SAAH-N-------NA---- 207 (497) T ss_pred HHHHhhhcccCcccccccchhhhHHHHHH---HHhhhhHHhhccccccCCCceE-EEEE--cCCC-C-------cc---- Confidence 0000011112222221 1233334444 4456678899999999987532 2211 1000 0 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEee Q lcl|NC_015286. 130 PNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTAR 209 (457) Q Consensus 130 a~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAK 209 (457) . -.+| +..++|...+++++++.+| T Consensus 208 -----------------------------------------~--------wv~E-------~~~~~~s~~~f~~i~~~~~ 231 (497) T protein:vir:78 208 -----------------------------------------A--------AVAE-------AGTYPFSSEEFARVYEQVG 231 (497) T ss_pred -----------------------------------------e--------eecc-------CcccccccccceeeEeeee Confidence 0 0011 1123444455577777777 Q ss_pred cccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhh--------hhheeeeeecccccc--------ce Q lcl|NC_015286. 210 ARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRT--------IYTNAVKGAQNNTAT--------AG 273 (457) Q Consensus 210 SRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~--------l~tvA~rgk~~~v~~--------~G 273 (457) .-+-...+|-||++|-- +.++.|.+-|+..|..-+|+.||.- |.+.+..+.+..... .+ T Consensus 232 k~a~~~~iS~ell~d~~-----~l~~~i~~~l~~~i~~~~d~~~l~G~G~~~p~Gil~~~~~~~~~~~~~~~~~~~~~~~ 306 (497) T protein:vir:78 232 KVANALTITDEGLRDAP-----ELFNFVQGRLLEGIQRKEEVQLLAGGGYPGVNGLLQRSTGFTASSASSLFGATSATVS 306 (497) T ss_pred eeEeecHhHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccccccccchhhhhhhhh Confidence 77777889999999942 3789999999999999999999862 222211111100000 01 Q ss_pred eEeeccccchhHHHH-----HHHHH----------------------HHHHHHHHHHHHHhcccCCccEEEEchhHHHHH Q lcl|NC_015286. 274 VFDLDVDSNGRWSVE-----KFKGL----------------------LFQIERDANAIGQQTRRGKGNILICSADVASAL 326 (457) Q Consensus 274 v~Dl~~~~~grw~~e-----~~k~l----------------------~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L 326 (457) ..++..+..+.|.+. ..+.. ...-...+-...+++....++.+|.++.....| T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vmn~~~~~~l 386 (497) T protein:vir:78 307 NVKFPADGTNGAFVGQDTVASLKYGRVVTGAAGSGSGVAGSYPTAAEIAENVFDAFVDIQLTLFQTPNAVVMNPRDWELL 386 (497) T ss_pred hhhhhcccccchhhhhhHHHHHHHHHhhhhhhhhccchhccccchhhhhhHHHHHHhhhhhhcccCCCeEEEchHHHHHH Confidence 111111111111110 00000 000012222334456666777788888877666 Q ss_pred hh----CCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccceEEEEE-ec-CC----CccceeEEc Q lcl|NC_015286. 327 GM----AGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGY-KG-TS----PYDAGLFYC 396 (457) Q Consensus 327 ~~----sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~-KG-~~----~~d~glfya 396 (457) .. .|-.-+.|...+.. .......++|. +++|++.+..|. -++ ++|- +- .. ..+-.+-.. T Consensus 387 ~~lkd~~G~~i~~~~~~~~~------~~~~~~~~~l~-G~pV~~t~~~~~---~~~-~~Gd~~~~~~~i~~r~~~~v~~~ 455 (497) T protein:vir:78 387 RLTKDANGQYMGGNFFGNAY------GNPVNGGKNIW-GVPVVTTPLIPL---GTI-LVGHFAPSVIQTARREGVTMQMT 455 (497) T ss_pred HHhhcCCCceeccCcccccc------cccccCCceee-ceeeEecCCCCC---Cce-EEeecccceEEEEEecccEEEee Confidence 54 22211111111100 01111223554 478888877663 122 2221 10 00 001112222 Q ss_pred cccccccccccCCccccceeeeeeeeee-eeccccccccCccccccccc Q lcl|NC_015286. 397 PYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGALTANT 444 (457) Q Consensus 397 PYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~ 444 (457) ||... +=.+.|=.+=+..|+++ +.+|-+-..=+- .....++ T Consensus 456 ~~~~~------~f~~n~v~~r~~~r~~~~v~~p~A~~~l~~-~~~~~~~ 497 (497) T protein:vir:78 456 NSNGT------DFVDGKVTVRAEERLGLLVYRPSAFQLIQL-KKGATGS 497 (497) T ss_pred cccch------hhhcCcEEEEEEEeecceeeccccEEEEEe-cCCccCC Confidence 22110 11122334445678877 788874422110 0111122 No 104 >protein:vir:9704 Length: 394 # NCBI annotation: hypothetical protein # Family: family:all:21 # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795466;genbank:gi:28876225;genbank:GeneID:1257769 Probab=57.51 E-value=0.43 Score=22.58 Aligned_cols=315 Identities=16% Similarity=0.135 Sum_probs=122.3 Q ss_pred Cc--hHHHHHHhhHhhccccc------c--ccccchhhhhhhhhccchHHHHHHHHHHh--hhhh-------hccc-ccc Q lcl|NC_015286. 1 MS--LQQLQEKWAPVLNHESL------P--EIEDTHKRGVVAQLLENQEKAITEEASVL--NETL-------QTTG-YTG 60 (457) Q Consensus 1 ~~--~~~l~~~w~~~l~~~~~------~--~i~~~~~~~v~~~~~~n~~~~~~~~~~~~--~e~~-------~~~g-~~~ 60 (457) +. .+++.+ =....+.+.. + .-...+|+.+ ...+..+....+...... .+.. .... ..+ T Consensus 53 i~~l~~~~~~-~e~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (394) T protein:vir:97 53 LVEAENDLKL-YESSVEVGGAENIGGKEVTQEEKTYRESV-NDFIRSKGKIVNDSLRFEGKDEVLMPINETTPVEPQKDG 130 (394) T ss_pred HHHHHHHHHH-HHHHhhhhccccccccccchhhHHHHHHH-HHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhhhccc Confidence 11 011100 0001111111 0 1111112211 111211111111110000 0000 0000 001 Q ss_pred ccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccccccccc Q lcl|NC_015286. 61 ASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGA 140 (457) Q Consensus 61 ~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~ 140 (457) ....+|...--....-.+++...+......++.+.||+++++-+--++. .++. -+ T Consensus 131 ~t~~~gg~liP~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~--------------- 185 (394) T protein:vir:97 131 IKKENAKPVSSEEILYTPAREVKTVVDLKPFTTVYQAKKASGKYPVLQR-----ATTK-----MV--------------- 185 (394) T ss_pred cccccccccChHHHHHHHHHHhhhhhhhhhhceeeeccCcceEEEEEec-----CCCc-----cc--------------- Confidence 1111122211112222355555667778889999999888764422211 0000 00 Q ss_pred cccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccc-eeEEEEEEEEeecccccceeeH Q lcl|NC_015286. 141 YDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREM-GFSIEKVTVTARARALKAEYSI 219 (457) Q Consensus 141 ~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EM-sFsIeK~tVtAKSRaLKAEYT~ 219 (457) -.+|. ...++. ..++++++..++.-+-...+|- T Consensus 186 ---------------------------------------~v~E~-------~~~~~~~~~~~~~v~l~~~k~~~~i~is~ 219 (394) T protein:vir:97 186 ---------------------------------------TVAEL-------EKNPALAKPDFKDVAWNIDTYRGAIPLSQ 219 (394) T ss_pred ---------------------------------------eeccc-------ccccccccccceeEEeehhheeeehhhHH Confidence 00110 011211 1334666666666666778999 Q ss_pred HHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccchhHHHHHHHHHHHHHHH Q lcl|NC_015286. 220 ELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIER 299 (457) Q Consensus 220 ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ 299 (457) ||.+|- +.|.+++|.+-|+..|..-+|..||.-+-+.+ +.+...++ ....++ T Consensus 220 ell~ds----~~~~~~~i~~~la~~~~~~~~~~i~~g~~~~~---------~~~~~~~~----------~~~~~~----- 271 (394) T protein:vir:97 220 ESIDDA----DVDLVGIVSESISQIKVNTTNDAIAKVLKSFT---------TKTVKNLD----------EIKALL----- 271 (394) T ss_pred HHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------ccccccHH----------HHHHHH----- Confidence 999986 34678889999998888888988887542221 12221110 011111 Q ss_pred HHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEE--ecccccccccc Q lcl|NC_015286. 300 DANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYV--DPYSANVADKH 377 (457) Q Consensus 300 ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~--D~y~~~~~~~d 377 (457) +.. .. .++.+. +|+|+.+...|.. +. ..+|.-- ...+.+ ...-++|.| ++|++ |...+. . T Consensus 272 --~~~-~~-~~~~a~-~v~n~~~~~~l~~---lk---d~~G~~i-~~~~~~-~~~~~~l~G-~pv~~~~~~~~~~----~ 333 (394) T protein:vir:97 272 --NGG-FD-PAYNVS-LIVSQSFYQTLDT---LK---DGNGRYL-LQDDIT-AVSGKVLLG-KPVFVLSDEVLGA----N 333 (394) T ss_pred --Hhh-hh-hhhCCE-EEEcHHHHHHHHH---hh---ccCCCee-eecCcC-CCCCceecc-ceeEEecccccCC----c Confidence 110 11 122344 5689998887765 21 1111100 001111 112346655 56655 433321 2 Q ss_pred eEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eecccccc---ccCccccc Q lcl|NC_015286. 378 YYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQG---LTQGSGAL 440 (457) Q Consensus 378 Y~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~---~~~~~~~~ 440 (457) -+++|-- + .++++..-.. ..+...|...++..+-...|++. +.+|-+-. .+..+.-+ T Consensus 334 ~~~~gd~--~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~d~~v~~~~a~~~~~~~~~~~p~ 394 (394) T protein:vir:97 334 KAFIGDF--K---RGVLFADRKD-LGLRWADNEIYGQYLQAVLRFGVSKVDDKAGYYVTFTPEPLPL 394 (394) T ss_pred cEEEeec--c---ccEEEEEecc-eEEEEecccccceeEEEEEEEccEEecccceEEEEecccccCC Confidence 2333310 0 0111111111 11122344445555556678877 56664221 11111112 No 105 >protein:vir:1383 Length: 421 # NCBI annotation: major capsid protein # Family: family:all:21 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612835;genbank:gi:20065969;genbank:GeneID:935826 Probab=57.26 E-value=0.44 Score=22.55 Aligned_cols=330 Identities=10% Similarity=0.016 Sum_probs=123.5 Q ss_pred Cc----------hHHHHHHhhHhhcccc-ccccccchhhhh-h--hhhccc---hHHHHHHHHHHhhhhhhccc-----c Q lcl|NC_015286. 1 MS----------LQQLQEKWAPVLNHES-LPEIEDTHKRGV-V--AQLLEN---QEKAITEEASVLNETLQTTG-----Y 58 (457) Q Consensus 1 ~~----------~~~l~~~w~~~l~~~~-~~~i~~~~~~~v-~--~~~~~n---~~~~~~~~~~~~~e~~~~~g-----~ 58 (457) .+ .++|.++..-+-+... +-+-....++.. . .+...+ .+..-.+..+.+...+..+. + T Consensus 35 ~~~~e~~~~~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 114 (421) T protein:vir:13 35 KKEEEARSKALEREKIEARMEIIEEEIESVMTAIDEERKNTNFTGGRVIINGDSKEEKRSLQLSAMSKTIRGIQLSEEER 114 (421) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHhhhccchhHHHh Confidence 11 2222222222111100 000000000000 0 000000 00000011111111110000 1 Q ss_pred cccccccccc---ccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccc Q lcl|NC_015286. 59 TGASTATGPV---AGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFS 135 (457) Q Consensus 59 ~~~st~tg~i---~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fS 135 (457) .+.+++.|.. ..+.+. ++....+.....+++-+.||+++++-+--.+ .... ..+ T Consensus 115 a~~t~~~gg~liP~~~~~~---Ii~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-----~~~~--------------~~~- 171 (421) T protein:vir:13 115 DIMSSTNNGAVIPQEFVNE---FEKLKEGYPSLKEHCHVIPVNRNAGKMPVRA-----GASV--------------DKL- 171 (421) T ss_pred hccccCCcceecchhhHHH---HHHHHHhhhhhhhhceeeeccCCceEEEEee-----cCCc--------------cce- Confidence 1112222221 112233 3444445567788999999998876332111 0000 000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccc Q lcl|NC_015286. 136 GGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKA 215 (457) Q Consensus 136 G~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKA 215 (457) . ..+| +...++-..++++++..++.-+-.. T Consensus 172 -----------------------~--------------------~~~E-------~~~~~~s~~~f~~i~~~~~k~~~~v 201 (421) T protein:vir:13 172 -----------------------A--------------------NLAK-------DTELVKAMLKTQPMAYDIDDYGLLA 201 (421) T ss_pred -----------------------e--------------------eccc-------cccccccccceeEEEeeeeeeEeeh Confidence 0 0000 0011222223344444444444456 Q ss_pred eeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccc-ccceeEeeccccchhHHHHHHHHHH Q lcl|NC_015286. 216 EYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNT-ATAGVFDLDVDSNGRWSVEKFKGLL 294 (457) Q Consensus 216 EYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v-~~~Gv~Dl~~~~~grw~~e~~k~l~ 294 (457) .+|-||.+|-- .|.++.|.+-|+..+..-+|..|+..+ .|+ ..+++.++ +..+.++ T Consensus 202 ~iS~ell~ds~----~~l~~~i~~~la~~~~~~~~~~i~~~~---------~g~~~~~~~~~~----------d~i~~~~ 258 (421) T protein:vir:13 202 PIDNSLLEDSE----INFLEFVNEEFAEFAVNTENAEIVKQA---------KAVLAEETINDY----------AGLVKTI 258 (421) T ss_pred hhhHHHHhhhH----HHHHHHHHHHHHHHHHHHhhhhHhhhh---------hhccccccccch----------HHHHHHH Confidence 78999999853 467888888888888888999888643 122 22333322 2344455 Q ss_pred HHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEeccccccc Q lcl|NC_015286. 295 FQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVA 374 (457) Q Consensus 295 ~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~ 374 (457) .++... -+.+..+|+++.....|.. |. ..+|. ....+.. ..--++|. +++|++..++|... T Consensus 259 ~~l~~~---------~~~~a~~v~n~~~~~~l~~---lk---d~~G~--~i~~~~~-~~~~~tl~-G~pV~~~~~~~~~~ 319 (421) T protein:vir:13 259 NSLVPN---------ARKRAIIVTNSDGRAYLDG---LM---DKQGR--PLLKELS-DGGDLVFK-GRPVIELEESIFDV 319 (421) T ss_pred HHhhhh---------hcCCCEEEEcHHHHHHHHH---hh---cCCCc--eeecCcC-CCCCceec-ceeeEEeccccccC Confidence 554321 2344567888888877765 21 11111 1111111 11124553 46677665554211 Q ss_pred c----------cceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeeee-ecc-------------cc Q lcl|NC_015286. 375 D----------KHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGMV-SNP-------------FA 430 (457) Q Consensus 375 ~----------~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l~-~nP-------------~~ 430 (457) . .+|+.++.++....+.+-. + +-...+=.+-+..|++.. .+| |. T Consensus 320 ~~~~~~~~gd~~~~~~~~~~~~~~v~~~~~--~----------~f~~~~~~~r~~~r~d~~~~~~~a~~~~~~~~~~a~v 387 (421) T protein:vir:13 320 GDETKFIVSDFKTLIKFMDRKQYLIDQSKE--A----------GYTKNETIARIIERFDVNSPLDKSSDAEKIRKFGVIV 387 (421) T ss_pred CCceEEEEEeccccEEEEEecceEEEeecc--c----------ccccCeeEEEEEeeecceeecchhhheeeecccceee Confidence 1 1123333332222111100 0 111222234445555442 221 11 Q ss_pred ccccCcccccccccchheeeeeeeecC Q lcl|NC_015286. 431 QGLTQGSGALTANTNRYYRRVQVANLM 457 (457) Q Consensus 431 ~~~~~~~~~~~~~~n~~~~r~~~~~l~ 457 (457) ...+...+....+++-=.+|-+|+.-= T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (421) T protein:vir:13 388 KLQEVLKSSPRSGKNKNESKEEIKEEG 414 (421) T ss_pred ccccccCCCCcCCCCccccchheeecc Confidence 111112222233333334444443332 No 106 >protein:vir:4456 Length: 401 # NCBI annotation: Major capsid protein precursor # Family: family:all:21 # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700379;genbank:gi:23505451;genbank:GeneID:955658 Probab=56.61 E-value=0.45 Score=22.47 Aligned_cols=317 Identities=14% Similarity=0.175 Sum_probs=120.2 Q ss_pred CchHHHHHHhhH-------------------------hhccc-----cccccccchhhhhhhhhccchHHHHHHH-HHHh Q lcl|NC_015286. 1 MSLQQLQEKWAP-------------------------VLNHE-----SLPEIEDTHKRGVVAQLLENQEKAITEE-ASVL 49 (457) Q Consensus 1 ~~~~~l~~~w~~-------------------------~l~~~-----~~~~i~~~~~~~v~~~~~~n~~~~~~~~-~~~~ 49 (457) -..+++.+.... .++.+ ........+|+.+...|..-+...+++. .+.+ T Consensus 28 ~~~~~~e~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~~lr~~~~~~~~~~e~~a~ 107 (401) T protein:vir:44 28 KRVEAIEQEKGKLAGQVETLNGKLSELENLKSDLEKELLELKRPARGAQNKVAAEHKDAFVGFLRKGREDGLRDLERKAL 107 (401) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHhhhhhhhhHHHHHHHh Confidence 000000000000 00000 0011111122222222211111111111 1111 Q ss_pred hhhhhcccccccccccccc---ccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccc Q lcl|NC_015286. 50 NETLQTTGYTGASTATGPV---AGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAF 126 (457) Q Consensus 50 ~e~~~~~g~~~~st~tg~i---~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAl 126 (457) .+. ..+.|.+ ..+.+.++.+.| ...+..+++-+.||++++..+.-.. .+. .+ T Consensus 108 ~~~---------~~~~GG~~iP~~~~~~ii~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~------~~~------~a- 162 (401) T protein:vir:44 108 QVG---------TDEDGGYAVPEELDRSILSLLK---DEVVMRQEATVITVGGSDYKKLVNL------GGT------AS- 162 (401) T ss_pred hcC---------CCCCCceeccHhHHHHHHHHHH---hhhhhhhhceeeecCCCceEEEEec------CCc------cc- Confidence 111 1111111 234555666665 3445678899999998864332110 000 00 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEE Q lcl|NC_015286. 127 FNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTV 206 (457) Q Consensus 127 fnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tV 206 (457) .+ .++.+... .+....|.+..|.+.|.. T Consensus 163 ------~w--------------------------------------------v~E~~~~~-~~~~~~~~~v~~~~~k~~- 190 (401) T protein:vir:44 163 ------GW--------------------------------------------VGETDTRS-QTATSRLGLIEPFMGEIY- 190 (401) T ss_pred ------ee--------------------------------------------eccccccC-ccccccceeeeeehhhee- Confidence 00 00000000 011124555555555543 Q ss_pred EeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccc------ Q lcl|NC_015286. 207 TARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVD------ 280 (457) Q Consensus 207 tAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~------ 280 (457) --..+|-||.+|- .+|.+++|.+-|+..|...+++.+|.-= - .+ ...|++..... T Consensus 191 ------~~~~iS~ell~ds----~~~l~~~i~~~la~ai~~~~~~~~l~G~--G--~~-----~p~Gil~~~~~~~~~~~ 251 (401) T protein:vir:44 191 ------GNPQATQKMLDDA----FFNVEAWINSELATEFAEQEEIAFTTGD--G--TK-----KPKGFLAYESTEESDKA 251 (401) T ss_pred ------eehhhhHHHHhcc----hHHHHHHHHHHHHHHHHHHHHhhhhccC--C--CC-----ccceeeccccccccccc Confidence 3456899999984 3578999999999999999999888520 0 01 12222211100 Q ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccc Q lcl|NC_015286. 281 ------------SNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVD 348 (457) Q Consensus 281 ------------~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d 348 (457) ..+.-..+....|++.+..+ -+. +...|+++.....|.. |. ..+|. .....+ T Consensus 252 ~~~~~~~~~~t~~~~~~~~d~i~~~~~~l~~~--------~~~-~a~~v~n~~~~~~L~~---lk---d~~G~-~l~~~~ 315 (401) T protein:vir:44 252 RAFGKLQHIVSGEATAVTADAIIKLIYTLRKA--------HRT-GAKFMMNNNSLFAIRL---LK---DTEGN-YLWRPG 315 (401) T ss_pred cccccccccccccccccCHHHHHHHHHhcchh--------hhc-CCEEEEcHHHHHHHHH---hh---ccCCc-eeecCC Confidence 00111122233343333221 122 2346788888877764 21 11111 001111 Q ss_pred cCCceEEEEecCceEEEEeccccccccc-ceEEEEEecCCCccceeEEcccccccccc-ccCCccccceeeeee--eeee Q lcl|NC_015286. 349 DTSSTLVGTLNGRIKVYVDPYSANVADK-HYYVAGYKGTSPYDAGLFYCPYVPLQQVR-AINPDTFQPKIGFKT--RYGM 424 (457) Q Consensus 349 ~~~~~~~G~l~~~~~vy~D~y~~~~~~~-dY~~vG~KG~~~~d~glfyaPYv~~~~~~-~~Dp~s~qP~~g~~t--RY~l 424 (457) .+ ...-++|. +++|+++...|..... +.+++| +-. -+|-=+ .-..+. ..||-.-+-.++|.. |+|. T Consensus 316 ~~-~g~~~~l~-G~PVv~~~~~p~~~~~~~~i~~G---d~~----~~~~i~-~~~~~~~~~~~~~~~~~v~~~a~~r~d~ 385 (401) T protein:vir:44 316 LE-LGQPSSLA-GYGIAENEQMPDIAADAKAIAFG---NFK----RGYTIV-DRIGTRILRDPYTNKPFVGFYTTKRTGG 385 (401) T ss_pred cC-CCCCceec-ceeeEEecCcCCccCCccEEEEe---ehh----ccEEEE-EecceEEeeeccccCCcEEEEEEEEecc Confidence 11 11124563 5777777665532211 112222 110 000000 000011 123333234444443 6666 Q ss_pred -eeccccccccCcccc Q lcl|NC_015286. 425 -VSNPFAQGLTQGSGA 439 (457) Q Consensus 425 -~~nP~~~~~~~~~~~ 439 (457) +.+|-+...-.-.++ T Consensus 386 ~~~~~~a~~~l~~~aa 401 (401) T protein:vir:44 386 MLVDSQAIKLLKIAAA 401 (401) T ss_pred EEecccceEEEEeecC Confidence 556554322211111 No 107 >protein:vir:8885 Length: 347 # NCBI annotation: major capsid protein A # Family: family:all:975 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813774;genbank:gi:29366729;genbank:GeneID:1258837 Probab=56.14 E-value=0.46 Score=22.42 Aligned_cols=306 Identities=17% Similarity=0.077 Sum_probs=132.3 Q ss_pred CC-CcceeeeEeeeeecccCCcccCccccccc-----ccccccccccccccccccccccccccccccccccccccccccc Q lcl|NC_015286. 97 MT-GPTGLIFAMRTNYGAERDPAASGYDEAFF-----NEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQ 170 (457) Q Consensus 97 mT-GPTGLIFAMRsrY~~~~g~~~~~~~EAlf-----nEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~ 170 (457) |- .|+|.=-+.|..++.. ++..-+|| .|.++.|.-.+-.... .......+.+..-+.-....+.. T Consensus 1 ~a~~~~~~~~~~~~g~~~~-----~~d~~al~ie~~~geV~~~f~~~s~~~~~---~~~r~i~~G~sv~~~~iG~~~~~- 71 (347) T protein:vir:88 1 MANATGGQQIGANQGKGQS-----AADKLALFLKVFGGEVLTAFVRRSVTMDK---HMVRTIQNGKSASFPVMGRTKGY- 71 (347) T ss_pred CCCcccchhhhccCCCCcc-----ccchHHHHHHHHHHHHHHHHHHHhhhhhc---cccccccCcceEEEeeecceeee- Confidence 43 3444444444443321 11123554 3344444321110000 00011111111111111111000 Q ss_pred cccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhh Q lcl|NC_015286. 171 TADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEIN 250 (457) Q Consensus 171 ~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEIN 250 (457) -...++.+...-.+....|.-++||++.. +..-|+-.-+.++ | .|--.|++.=...+++.+++ T Consensus 72 -------~~~~g~~l~~~~~~~~~~~~~i~ID~~~y--------~~~~Vdd~D~~q~-~-~D~r~~~~~~~g~aLA~~~D 134 (347) T protein:vir:88 72 -------YLAPGENLDDKRKDIKHSEKVIQIDGLLT--------SDVLIYDIEDAMN-H-YDVRAEYSAQLGEALAIAAD 134 (347) T ss_pred -------eeccccCCCCCCCCCccceEEEEEechhh--------hhhhhhhHHHHhh-c-CCchHHHHHHHHHHHHHHHH Confidence 01122333322123467888999997532 2223333333333 4 78889999999999999999 Q ss_pred HHHHhhhhheeeeeeccccccceeEeec--------cccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhH Q lcl|NC_015286. 251 REVVRTIYTNAVKGAQNNTATAGVFDLD--------VDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADV 322 (457) Q Consensus 251 ReIi~~l~tvA~rgk~~~v~~~Gv~Dl~--------~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~v 322 (457) +-|+..|..-+..-....-..+|+.+-. +..+..-..+.....+++....++ .+-.-=.|.|+|++|+. T Consensus 135 ~~i~~~l~~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~Ld---e~~VP~~gR~~vv~P~~ 211 (347) T protein:vir:88 135 GAVLAEMAKLCNLPAASNENIAGLGQAVVLNIGAAADLVDVEARGKAILKGLTLARARLT---KNYVPAGDRRFYCAPED 211 (347) T ss_pred HHHHHHHHHhhccccccccccCCccccccccccccccccchhhhHHHHHHHHHHHHHHHh---hcCCCCCCCEEEeCHHH Confidence 9999888665543222111122211110 000100001111112233222222 12233358999999998 Q ss_pred HHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccc------cceEEEE------------Ee Q lcl|NC_015286. 323 ASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVAD------KHYYVAG------------YK 384 (457) Q Consensus 323 a~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~------~dY~~vG------------~K 384 (457) ...|-.. ..+..+ +.... .+.....+|.+ .+++||.=+..|-.+. ..|-..+ |. T Consensus 212 y~~Ll~~--~~~~~~----~~~~~-~~~~~G~vg~i-~G~~V~~s~nlp~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 283 (347) T protein:vir:88 212 YSAILSA--LMPNAA----NYAAL-IDPETGNIRNV-MGFEVIEVPHLTVGGAGDNNPADGVAPTNQKHIFPATATGDDR 283 (347) T ss_pred HHHHhcc--hhhhhh----hhccc-cchhcceeeee-ccceEEEeecccccccccccccccccccccccccccccccccc Confidence 8766431 222211 11111 12233467776 5788888765541000 0111111 22 Q ss_pred cCCCccceeEEccc----ccccccc---ccCCccccceeeeeeeeee-eeccccccc-cCcccc Q lcl|NC_015286. 385 GTSPYDAGLFYCPY----VPLQQVR---AINPDTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGA 439 (457) Q Consensus 385 G~~~~d~glfyaPY----v~~~~~~---~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~ 439 (457) ++..-..+|||.|= +.+.+.. ..||+.|-=.|==+..||. +.+|.+-+. .-..++ T Consensus 284 ~d~~~~~~l~~~~~a~g~v~~~d~~~e~~r~~~~~~d~i~~~~~~G~~~~rPe~a~~~~~~~a~ 347 (347) T protein:vir:88 284 VAQNNVVGLFNHRSAVGTVKLKDMALERARRPEFQADQIIGKYAMGHGGLRPEAAGALVFTPAA 347 (347) T ss_pred cccCcEEEEEechhhhhheecccceeeeeechhhHHHHhhhhhhhcCceeccceEEEEEeCCCC Confidence 23333456777664 3333321 3477777665555556666 777764322 111222 No 108 >protein:vir:94622 Length: 341 # NCBI annotation: PfWMP4_37 # Family: family:all:2203 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762667;genbank:gi:115304375;genbank:GeneID:5142322 Probab=53.77 E-value=0.52 Score=22.14 Aligned_cols=297 Identities=12% Similarity=0.085 Sum_probs=119.8 Q ss_pred HHHhhhhhhccccccccccccccccccceehh--hhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccc Q lcl|NC_015286. 46 ASVLNETLQTTGYTGASTATGPVAGFDPVLIS--LIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYD 123 (457) Q Consensus 46 ~~~~~e~~~~~g~~~~st~tg~i~~~~P~Lv~--l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~ 123 (457) -.+.|.. -+.|.+|..+++|-|.+.+ +..+..+++++-+++ | .|...-. T Consensus 1 ~~~~~~~------~~~~~~t~~v~~fipei~s~~i~~~l~~~~v~~~~~---------------~-d~~~~~~------- 51 (341) T protein:vir:94 1 MALGNTI------TGPSINTQRGQQFIPEQWLSEVQMFRKAKMLDTSVV---------------K-TWGAQVK------- 51 (341) T ss_pred Ccchhhh------ccccccchhHHHHHHHHHHHHHHHHHHhhcchhhcc---------------c-ccccccc------- Confidence 1111222 2445566677777777655 334344444433321 1 1110000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEE Q lcl|NC_015286. 124 EAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEK 203 (457) Q Consensus 124 EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK 203 (457) +|+.-.-. ..+. .+...++.+..+ ..+.+ .-.+..++||| T Consensus 52 -----------~Gdtv~ip---------~~g~----------~~~~d~~~~~~i---~~~~~-------~~~~~~itiD~ 91 (341) T protein:vir:94 52 -----------KGDTFHVP---------RISE----------LGVEDKATDVPV---GVQPV-------NDTDFVITVDT 91 (341) T ss_pred -----------CCceEEEe---------ccCc----------ceeeeecCCCcc---ccccc-------cCceEEEEEee Confidence 00000000 0000 000000000000 01111 12456788887 Q ss_pred EEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccch Q lcl|NC_015286. 204 VTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSNG 283 (457) Q Consensus 204 ~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~g 283 (457) +..-+-. + +-+|.. +. | .|--.++..-....++.+++++|+..+-..+.... .++........ ..++ T Consensus 92 ~~~~~~~--i---~d~d~~---~~-~-~d~~~~~~~~~~~aLA~~~D~~i~~~~a~~~~~~~-~~~~~~~~~~~--t~~~ 158 (341) T protein:vir:94 92 DRTTAVA--L---DDLLEI---QA-S-YDLRAPYLEAMGYALAKDMTGSILGLRAAVQNTAS-QNVFSSSNGAI--TGNG 158 (341) T ss_pred eeeccee--e---chHHHH---hh-c-cchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-CccccCccccc--cCch Confidence 6432210 0 122222 22 3 68888888888999999999999987643332111 11111111111 1111 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-ccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCce Q lcl|NC_015286. 284 RWSVEKFKGLLFQIERDANAIGQQT-RRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRI 362 (457) Q Consensus 284 rw~~e~~k~l~~qi~~ean~i~~~T-~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~ 362 (457) .+ +.|....++.+...+- ---.|.|+|++|++.+.|-...- +...... +........+|.+ -++ T Consensus 159 ~~-------~~~~~i~~a~~~Lde~~VP~~gR~lvv~P~~~~~Ll~~~~--~~~~~~~-----g~~~l~~G~ig~i-~G~ 223 (341) T protein:vir:94 159 QA-------FSFAVFLAARRLLLEADVPEEKIVLLISPGQESALFTIPQ--FISKDFI-----NNAPIAQGQIGSL-MGV 223 (341) T ss_pred hh-------hhHHHHHHHHHHHhhcCCCccCCEEEeCHHHHHHHhhchh--hhhhhcc-----ccchhheeeeeeE-ece Confidence 11 1122222222222222 23367999999999988765432 2222211 1122334456777 479 Q ss_pred EEEEecccccccccceEEEE--------------------EecCCCccceeEEccccccccccccCCcccccee------ Q lcl|NC_015286. 363 KVYVDPYSANVADKHYYVAG--------------------YKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKI------ 416 (457) Q Consensus 363 ~vy~D~y~~~~~~~dY~~vG--------------------~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~------ 416 (457) .||...+.|..+...|..-. ++|......||++.+. ..-..+.+||+.++... T Consensus 224 ~V~~Sn~lp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~gl~~~~~-av~~~k~~~~~~~~~~~~~~~~~ 302 (341) T protein:vir:94 224 RVIRTSLIGNNSATGWRNGAPTIAPAEATPGFTGSRYLPKQDSFTSLPATFTGNSR-PVHTAVMCHMDWAAAVVSKAPRV 302 (341) T ss_pred EEEEeccccccccccccccccceecccccccccccccccccccccccEEEEEEecc-cccceeeecchhhhccccccccc Confidence 99999877754432221110 1112223344544443 12222334555444321 Q ss_pred -----------eeeeeeee---eeccccc-cccCccccc Q lcl|NC_015286. 417 -----------GFKTRYGM---VSNPFAQ-GLTQGSGAL 440 (457) Q Consensus 417 -----------g~~tRY~l---~~nP~~~-~~~~~~~~~ 440 (457) .+..||.+ +.+|-.- .+....+.+ T Consensus 303 ~~~~~~~~~~~~i~~~~~~G~~~lrp~~~v~~~~~~~~~ 341 (341) T protein:vir:94 303 TQSFENREQVWLMVGRQAYGARLYRPLHAVNIHTTGDTV 341 (341) T ss_pred cccchhhhhhhhhhhhhhhcccccCcceeEEEecCcCCC Confidence 12233333 3333321 111111111 No 109 >protein:vir:5739 Length: 366 # NCBI annotation: capsid protein # Family: family:all:21 # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892050;genbank:gi:33770513;interpro:IPR006444;uniprot:Q7Y410;genbank:GeneID:1732928 Probab=53.75 E-value=0.52 Score=22.14 Aligned_cols=325 Identities=17% Similarity=0.121 Sum_probs=116.5 Q ss_pred CchHHHHHHhhHhhccccccccccch----------hhhhhhhhc--cchHHHHHHHHHHhhhhhhccccc-cccccc-- Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDTH----------KRGVVAQLL--ENQEKAITEEASVLNETLQTTGYT-GASTAT-- 65 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~~----------~~~v~~~~~--~n~~~~~~~~~~~~~e~~~~~g~~-~~st~t-- 65 (457) |.-... .|+=+|+..|.+.... .|.+.+... -|..+.+. +..+..++.... +.++++ T Consensus 1 ~a~~~a----~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~a~a~~~g~~~~a~~----~a~~~~~~~~~~~a~~~~~~~ 72 (366) T protein:vir:57 1 MAAAVA----VPVKAHSVAPGIIIKEELQQYKGAGMTRMVMSIAAGKGNLADAAK----FAATELGDTGLSMAISTAAGS 72 (366) T ss_pred Cccccc----ccccccccccccccccccccccchhHHHHHHHHHhcccchhHHHH----HHHHhhcchhhhhhccccccC Confidence 221111 1222222222221111 111221111 12222211 111111111111 112222 Q ss_pred cccccccceeh--hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccccccccc Q lcl|NC_015286. 66 GPVAGFDPVLI--SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDP 143 (457) Q Consensus 66 g~i~~~~P~Lv--~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~ 143 (457) |... =|.-+ .++.+..+..+...+ |++.+++++|-+-=. +. .++ .+ T Consensus 73 Gg~l--vP~~~~~~ii~~l~~~s~l~~l-g~~~v~~~~g~~~~p--~~---t~~-----~~------------------- 120 (366) T protein:vir:57 73 GGAL--IPQNMQNEVIELLRDRTVVRIL-GARSIPLPNGNLSMP--RL---SGG-----AT------------------- 120 (366) T ss_pred Cccc--cchhHHHHHHHHHhhhcchhhh-ceeeeecCCCceEEE--EE---eCC-----cc------------------- Confidence 2111 12211 123322233333332 333333333211100 00 000 00 Q ss_pred ccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHH Q lcl|NC_015286. 144 GASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQ 223 (457) Q Consensus 144 ~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQ 223 (457) .+ . .+|. ..+++...+++++++..|.-+-...+|-||.+ T Consensus 121 --------------------------a~------w--v~E~-------~~~~~s~~~f~~i~~~~~k~~~~~~iS~ell~ 159 (366) T protein:vir:57 121 --------------------------AG------Y--VGEG-------KDVVATGATFDDVKLSAKTMIALVPVSNQLIG 159 (366) T ss_pred --------------------------ee------e--eccC-------ccccccccceeEEEEeeEEEEEeehhhHHHHh Confidence 00 0 0111 12333334446666666666666778999998 Q ss_pred hHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccc---------cchhH-HHHHHHHH Q lcl|NC_015286. 224 DLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVD---------SNGRW-SVEKFKGL 293 (457) Q Consensus 224 DLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~---------~~grw-~~e~~k~l 293 (457) |-- .|.|+.|.+-|+..|...+++.+|.-=-+ +....|++..... ....| .+...-.+ T Consensus 160 ds~----~~~~~~i~~~l~~a~~~~~d~a~l~G~G~--------~~~p~Gi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 227 (366) T protein:vir:57 160 RAG----FNVEQLLLGDILSAIATREDKAFLRDDGT--------GDTPKGMKAVATAANRLVAWTGTAINLTTIDEYLDS 227 (366) T ss_pred hhh----HHHHHHHHHHHHHHHHHHHHHHhhccCCC--------CccccceeeccccccceeeccccccchhhHHHHHHH Confidence 753 46889999999999999999988863100 1112333211100 01111 11111112 Q ss_pred HHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccc Q lcl|NC_015286. 294 LFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANV 373 (457) Q Consensus 294 ~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~ 373 (457) +..... .......+...|+++.....|.. +. ..+|.--+ .+.+ -|+|. +++|+++.+.|.+ T Consensus 228 ~~~~~~------~~~~~~~~a~~vmn~~~~~~L~~---lk---d~~G~~l~--~~~~----~g~l~-G~Pvv~s~~ip~~ 288 (366) T protein:vir:57 228 LILKHM------DSNSNMIRCGWGLSNRTYMTLFG---LR---DGNGNKVY--PEMS----QGILK-GYPIQRTSAIPAN 288 (366) T ss_pred HHHhhh------ccccccccCEEEecHHHHHHHHh---hh---ccCCceec--cCCC----CCeec-ceeeEEccccccc Confidence 111111 11222234445788888877765 21 11222111 1222 25674 5899998877642 Q ss_pred ------------cccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccccCccccc Q lcl|NC_015286. 374 ------------ADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGAL 440 (457) Q Consensus 374 ------------~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~ 440 (457) .++.++++|-.+..+.+-+ -++-|...+..-...=.+-|=.+=...|+++ +.+|-+ + T Consensus 289 ~~~~~~~~~i~~gdfs~~~i~~~~~i~i~~~-~ea~~~~~~g~~~~~f~~~~~~iR~~~~~d~~v~~~~a---------~ 358 (366) T protein:vir:57 289 LGDDGNESEIYFCDFNDVVIGEDGMMKVDFS-TEATYKDADGQLVSAFARNQSLIRVVTEHDIGFRHPEG---------L 358 (366) T ss_pred cccCCCccEEEEEecceEEEEEecceEEEEe-eccccccccccchhhhhcCceeEEeeeeeCcEeecccc---------E Confidence 1333444555554443211 0001110000000000011122333445555 333321 1 Q ss_pred ccccch-h Q lcl|NC_015286. 441 TANTNR-Y 447 (457) Q Consensus 441 ~~~~n~-~ 447 (457) .-.++. | T Consensus 359 ~~lt~~~~ 366 (366) T protein:vir:57 359 VLGTGVIW 366 (366) T ss_pred EEEecccC Confidence 111111 1 No 110 >protein:vir:1781 Length: 221 # NCBI annotation: minor capsid protein # Family: family:all:975 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570347;genbank:gi:18640506;genbank:GeneID:932719 Probab=52.59 E-value=0.55 Score=22.01 Aligned_cols=204 Identities=15% Similarity=0.206 Sum_probs=102.6 Q ss_pred EEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeec-- Q lcl|NC_015286. 201 IEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLD-- 278 (457) Q Consensus 201 IeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~-- 278 (457) ||=. |=|..=++-.-+-++ | .|-..|...=...+++.++++-|++.+...|.. +.......|..|.. T Consensus 1 iD~l--------L~a~~~VdDiD~aqa-~-~dvr~e~t~e~G~ALA~~~D~~i~~~~~~aA~~-~~p~~~~~~g~~~~~~ 69 (221) T protein:vir:17 1 MDDL--------LVASQFVYDLDEILA-Q-WNTRSEISKQIGEALAIHYDERIARVLASASIA-AAPVTGQDGGFSVNIG 69 (221) T ss_pred CCcc--------hhHHHHHHhHHHHHh-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cCcccccccCcceecc Confidence 2211 122222232333333 4 788888888899999999999999888766542 21111122333322 Q ss_pred --cccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchh-HHHHHhhCCcceecccccccccccccccCCceEE Q lcl|NC_015286. 279 --VDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSAD-VASALGMAGVLDYSPALNGNNALTGVDDTSSTLV 355 (457) Q Consensus 279 --~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~-va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~ 355 (457) ...+|.-....+ +....++ -.+----.|.|+|++|+ ...+|+... -.. .+.....++.+-.+...+ T Consensus 70 a~~t~~~~~l~dai----~~a~~~L---dekdVP~~gR~~vv~P~~y~~LL~~~d-~~~---~n~d~~~s~g~~~~g~~i 138 (221) T protein:vir:17 70 AGNTNNAQAIVDGF----FEAAAVL---DERSAPMDGRVAVLSPRQYYSLISSVD-TNI---LNREIGNTQGDMNTGKGL 138 (221) T ss_pred ccccCCHHHHHHHH----HHHHHHH---hhcCCCCCCCEEEeCcHHHHHHHHhcC-cce---eeeeccccccccccccee Confidence 122332112212 2222222 23345558999999997 556665311 111 111111122122222357 Q ss_pred EEecCceEEEEecccccccccceEEE------------EEecCCCccceeEEccccccccccccCCccccceeeeeeeee Q lcl|NC_015286. 356 GTLNGRIKVYVDPYSANVADKHYYVA------------GYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYG 423 (457) Q Consensus 356 G~l~~~~~vy~D~y~~~~~~~dY~~v------------G~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~ 423 (457) |.++ +++||.=.+.|+.+..+|... .|.|+-.-..||||.|- .+--++.+.|-|--|.+.-|- . T Consensus 139 ~~v~-G~~V~~SnnlP~~~gt~~~~~ag~~~~~~~~~~~yr~~fs~~~glv~~~~-Avgtvkl~~~~~~~~~~~~~~--~ 214 (221) T protein:vir:17 139 YVNA-GIRIYKSNVLASLYGTNLVTDPGDATTSGENNGSYRPAITDRAGLVFHKE-AADTVEVLLPPSRPPLVISMF--S 214 (221) T ss_pred eeec-CcEEEEeccCCcccccccccCCccccccccccccccccccceEEEEEcch-heeeeeeecCCCCCceeeeee--e Confidence 7775 899999988876555554421 34455445578888886 333445567777766543221 1 Q ss_pred eeeccccc Q lcl|NC_015286. 424 MVSNPFAQ 431 (457) Q Consensus 424 l~~nP~~~ 431 (457) + -.|.-. T Consensus 215 ~-~~~~~~ 221 (221) T protein:vir:17 215 I-RRPDRR 221 (221) T ss_pred c-cCCCCC Confidence 0 112211 No 111 >protein:vir:3158 Length: 321 # NCBI annotation: capsid protein gpE # Family: family:all:1377 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665929;genbank:gi:22091115;genbank:GeneID:951342 Probab=51.68 E-value=0.57 Score=21.90 Aligned_cols=302 Identities=15% Similarity=0.131 Sum_probs=119.7 Q ss_pred hhhhhccchHHHHHHHHHHhhhhhhccccccccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeeeEeee Q lcl|NC_015286. 30 VVAQLLENQEKAITEEASVLNETLQTTGYTGASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRT 109 (457) Q Consensus 30 v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRs 109 (457) +-.+.|.|-...+.+ ++ +.. .+..++...--.|..-.|++++.-+-.....+-|.||+...|.|=.+- T Consensus 1 ~~~k~~~~~l~~~~~-~~---------~~~-~~~~~~g~~v~~~~~~~l~~~i~e~s~~l~~i~v~~v~~~~~~i~~~~- 68 (321) T protein:vir:31 1 MASRTINNDLSRITE-KN---------ALT-VDDLDAGGTLPDPLWDEFWTDMIEETPLLDAIRTETVGAKKTRIPTLN- 68 (321) T ss_pred CchHHHHHHHHHHHH-hc---------ccc-ccccCCcceeCHHHHHHHHHHHHHhhhhhhhceeeeccCcceeeeeec- Confidence 333344331111111 11 111 111122111112333447776766666777888999988887653221 Q ss_pred eecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCC Q lcl|NC_015286. 110 NYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSS 189 (457) Q Consensus 110 rY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s 189 (457) ++.... ..+ ..+. .+ ... T Consensus 69 -~~~~~~-----------------~~~---------------~e~~--------------------------~~---~~~ 86 (321) T protein:vir:31 69 -IGERHR-----------------RPQ---------------DEGE--------------------------WN---ENE 86 (321) T ss_pred -cCCccc-----------------ccc---------------cccc--------------------------cc---ccc Confidence 000000 000 0000 00 001 Q ss_pred CCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheee-eeeccc Q lcl|NC_015286. 190 SNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAV-KGAQNN 268 (457) Q Consensus 190 ~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~-rgk~~~ 268 (457) ....|.++.+...|+.+- ...|-||.+| ..||.|-|+.|.+.++..|.+.+++-++.-= .+++ .+. T Consensus 87 ~~~~~~~~~~~~~k~~~~-------~~it~e~L~d--~a~~~d~e~~i~~~ia~~~a~~~~~~~~nGd-~~~~~~~~--- 153 (321) T protein:vir:31 87 SDVSTGTIDISTEKATVA-------WDLPREVVQE--NPEGEALADRILNLMTDAWSADVEDLAANGD-EDAEDSFE--- 153 (321) T ss_pred ccceeeeeeeeeEEEEee-------hhccHHHHHh--hhcchhHHHHHHHHHHHHHHHHHHhheeecc-ccCCCccc--- Confidence 123455566655555543 3468888887 2367888888888888888877777666431 1111 110 Q ss_pred cccceeEeec-------cccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccE-EEEchhHHHHHhhCCcceecccccc Q lcl|NC_015286. 269 TATAGVFDLD-------VDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNI-LICSADVASALGMAGVLDYSPALNG 340 (457) Q Consensus 269 v~~~Gv~Dl~-------~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~-~i~S~~va~~L~~sg~l~~~~~~~~ 340 (457) -..+|++-.- +...+.+..+.+..|++.|... =|-.+++ ++++++....+.. .+.-....-+ T Consensus 154 ~~n~G~l~~a~~~~~~~~~~~~~~~~d~l~~l~~~l~~~--------yr~~~~~v~im~~~~~~~~~~--~l~~~~~~~~ 223 (321) T protein:vir:31 154 NQNDGFITVAEGDVETIDAADDILDNDLVIRTIAGLDSK--------YRARMNPALIVSEDQLLSYHY--TLTDRDTPLG 223 (321) T ss_pred ccchhhhhhhccccccccccccccCHHHHHHHHHhccHh--------HhcCCCeEEEechHHHHHHHH--HHhcCCCccc Confidence 0012222110 0011222334455565554322 1334565 4788887644322 1111000000 Q ss_pred cccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEEcccccccccccc--CCccccc-eee Q lcl|NC_015286. 341 NNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAI--NPDTFQP-KIG 417 (457) Q Consensus 341 ~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~--Dp~s~qP-~~g 417 (457) +....+ ....+| ++++|++.+++|. +.++++-.-. |.|.=+-....-+.. ++.+... ++= T Consensus 224 ~~~l~~------~~~~tl-~G~pvv~~~~mP~----~~il~t~~~n------l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (321) T protein:vir:31 224 DNVIMG------EADVNP-FSFPIIGSGLWPD----DKAMFTDPQN------LIYALYRDLEIDVLTESDKVSERDLHAR 286 (321) T ss_pred cchhhc------cccccc-cceeEEEcCCCCC----CcEEEecccc------EEEEEeeccEEEEeecCccccccceeeE Confidence 000110 011133 5789999999884 3344443211 111111111111122 3333321 121 Q ss_pred -e-eeeeeee-ecccc----ccccCcccccccccc Q lcl|NC_015286. 418 -F-KTRYGMV-SNPFA----QGLTQGSGALTANTN 445 (457) Q Consensus 418 -~-~tRY~l~-~nP~~----~~~~~~~~~~~~~~n 445 (457) + ..+++-+ .++-+ .++......+-..+- T Consensus 287 ~~~~~~~~~~ve~~~a~a~~~~i~~~~~~~~~~~~ 321 (321) T protein:vir:31 287 YFMRGDDDFAIENTEAVVLAEGLGDPLEHLEEETS 321 (321) T ss_pred eeeeeecceeEeccccEEEEecCCcchhcccCCCC Confidence 1 2234432 22211 122221111111111 No 112 >protein:vir:9759 Length: 303 # NCBI annotation: putative structural protein # Family: family:all:966 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795521;genbank:gi:28876283;genbank:GeneID:1257824 Probab=49.03 E-value=0.65 Score=21.60 Aligned_cols=281 Identities=15% Similarity=0.139 Sum_probs=121.3 Q ss_pred cccccccccccccccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccccc Q lcl|NC_015286. 59 TGASTATGPVAGFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGG 137 (457) Q Consensus 59 ~~~st~tg~i~~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~ 137 (457) -+.+++ ++. -..|.+ -.+++++.+..+..+++.+-||++.+.-|. ++.. ++ +|- T Consensus 1 m~t~t~-gg~-liP~~~~~~ii~~l~~~s~i~~l~~~~~~~~~~~~ip----~~~~--~~------~a~----------- 55 (303) T protein:vir:97 1 MGTETS-KAS-LFDKHLVSDLINKVKGHSSLAKLSSQKPIPFNGSKEF----TFTL--DS------DID----------- 55 (303) T ss_pred CcccCC-CCe-EcchhHHHHHHHHHHhhchhhhhcceeecCCCceEEE----EEec--Cc------ceE----------- Confidence 222332 222 223333 346777778889999999999987654442 1110 10 000 Q ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeeccccccee Q lcl|NC_015286. 138 PGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEY 217 (457) Q Consensus 138 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEY 217 (457) ..+++| .+++-..+++.++..+|.-+-...+ T Consensus 56 ----------------------------------------wv~E~~---------~~~~s~~~f~~v~l~~~kl~~~~~i 86 (303) T protein:vir:97 56 ----------------------------------------VVAENG---------KKTHGGLSLEPVTIVPIKVEYGARL 86 (303) T ss_pred ----------------------------------------EeecCc---------cccccccceeeEEeeeEEEEEeehh Confidence 001111 1222222334455555555555678 Q ss_pred eHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeE-eeccc----cchhHHHHHHHH Q lcl|NC_015286. 218 SIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVF-DLDVD----SNGRWSVEKFKG 292 (457) Q Consensus 218 T~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~-Dl~~~----~~grw~~e~~k~ 292 (457) |-||.|.... ..++-+++|.+-|+..|...|+..+|.-... .-|........+.. .+... ..+.-..+.... T Consensus 87 S~ell~~~~d-~~~~l~~~i~~~la~a~~~~ld~a~l~G~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 163 (303) T protein:vir:97 87 SDEFLYATEE-EKIDILKAFNEGFAKKLARGIDLMAMHGINP--RTKKASDVIGTNHFDSKVTQVVKFTESEDADANIEA 163 (303) T ss_pred hHHHhhcCcc-chHHHHHHHHHHHHHHHHHHHHhhhhccccc--CCccccccccccccccccccccccccccchHHHHHH Confidence 9999863322 2356788999999999999999988865311 11111101011110 11000 001001122222 Q ss_pred HHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEeccccc Q lcl|NC_015286. 293 LLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSAN 372 (457) Q Consensus 293 l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~ 372 (457) ++..+. ...+..+-+|+++.....|.. ++ ..+|..- ...+.....-.|+|.| ++|+++.+.|. T Consensus 164 ~~~~~~---------~~~~~~~~~vmn~~~~~~L~~---lk---d~~g~~~-~~~~~~~~~~~~~l~G-~Pv~~s~~v~~ 226 (303) T protein:vir:97 164 AVNLIQ---------GAEGVVTGLAMDTEFSTALAK---VT---NGEMGPK-MYPELAWGANPDSING-LKSSVNTTVGA 226 (303) T ss_pred HHHHHh---------hcCCCccEEEEcHHHHHHHHH---hh---ccCCCeE-EecCccCCCCCceecc-eeeEEecccCC Confidence 322221 123555668899988887754 21 0111000 0011111122356764 89999876552 Q ss_pred cc----ccceEEEEEecCCCccceeEEcccc--ccccccccCCcc-----ccc-eeee--eeeeee-eeccccc-cccCc Q lcl|NC_015286. 373 VA----DKHYYVAGYKGTSPYDAGLFYCPYV--PLQQVRAINPDT-----FQP-KIGF--KTRYGM-VSNPFAQ-GLTQG 436 (457) Q Consensus 373 ~~----~~dY~~vG~KG~~~~d~glfyaPYv--~~~~~~~~Dp~s-----~qP-~~g~--~tRY~l-~~nP~~~-~~~~~ 436 (457) .. +.+.+++| +- ...+.+...- ++......|++. ||- -++| ..||+. +.||-+- .+++. T Consensus 227 ~~~~~~~~~~~~~G---df--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~n~~~~r~~~r~~~~v~~p~af~~l~~~ 301 (303) T protein:vir:97 227 GADEAESKDLVIIG---DF--ESMFKWGYAKQIPMEIIKYGDPDNSGKDLKGYNQIYLRAEAYIGWGILDAKSFARVTKG 301 (303) T ss_pred ccccCCCccEEEEe---ec--cccEEEEEecCcEEEEeeccCCCCcchhhhhcCcEEEEEEEEeccEeecccceEEeeCC Confidence 11 11222222 10 0111111111 111111112221 221 2344 567877 6666432 22221 Q ss_pred cccc Q lcl|NC_015286. 437 SGAL 440 (457) Q Consensus 437 ~~~~ 440 (457) .+ T Consensus 302 --~~ 303 (303) T protein:vir:97 302 --EV 303 (303) T ss_pred --CC Confidence 11 No 113 >protein:vir:95763 Length: 297 # NCBI annotation: head protein # Family: family:all:507 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950590;genbank:gi:119953785;genbank:GeneID:5076833 Probab=47.57 E-value=0.7 Score=21.44 Aligned_cols=275 Identities=13% Similarity=0.052 Sum_probs=120.2 Q ss_pred hhccccccccccccccc--ccccee-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccc Q lcl|NC_015286. 53 LQTTGYTGASTATGPVA--GFDPVL-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNE 129 (457) Q Consensus 53 ~~~~g~~~~st~tg~i~--~~~P~L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnE 129 (457) ..-+++++.++++.+-. -.-+.+ -.+++.+.+..+...++-+.||++++...+-... + ++ ++ T Consensus 1 m~~~~~~~~~~~~t~~~~~lvP~~~~~~ii~~~~~~s~l~~~~~~~~~~~~~~~~~~~~~--~---~~------~a---- 65 (297) T protein:vir:95 1 MTVQTFNPENVLVSQKKDGTLHKEFTDIIMKEVAQNSLVMQLGQYQEMEGEQEKTVYVQT--D---GI------SA---- 65 (297) T ss_pred CCccccccccccccCCCcceechhHHHHHHHHHHhhchhhhhcceeecCCCccEEEEEEc--C---Cc------ee---- Confidence 22233344433322211 122222 2355656677788889999999988776653221 0 00 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEee Q lcl|NC_015286. 130 PNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTAR 209 (457) Q Consensus 130 a~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAK 209 (457) . -.+|. ..+++-..++++++...| T Consensus 66 ---~----------------------------------------------~v~Eg-------~~~~~~~~~f~~v~l~~~ 89 (297) T protein:vir:95 66 ---Y----------------------------------------------WVNET-------EKIKTDKPEVVPVTLKAH 89 (297) T ss_pred ---E----------------------------------------------EeecC-------ccccccccceeEEEEeeE Confidence 0 00110 122333334456666666 Q ss_pred cccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeeccccc----hhH Q lcl|NC_015286. 210 ARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDVDSN----GRW 285 (457) Q Consensus 210 SRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~~~~----grw 285 (457) ..+-...+|.||.+|-. .|.+..|.+-|+..|...+++.+|.---+. ...|++....... +.- T Consensus 90 k~~~~~~is~ell~ds~----~~l~~~i~~~la~ai~~~~d~a~l~G~g~~---------~~~gi~~~~~~~~~~~~~~~ 156 (297) T protein:vir:95 90 KLGIILVTSREALNYTW----KKFFEDMKPQIVEAFYKKIDEAGLLGHDTP---------FANSVAKAAKDANKVIGGPI 156 (297) T ss_pred EEEEeehhhHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHhcccCCc---------ccccccccccccceeccccc Confidence 66666779999999875 468999999999999999999998531110 1122222211110 000 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEE Q lcl|NC_015286. 286 SVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVY 365 (457) Q Consensus 286 ~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy 365 (457) ..+....++.++. . .-+..+-+|++++....|.. +.- .+|.- .. ... .|+|. +++|+ T Consensus 157 t~~~i~~~~~~l~-------~--~~~~~~~~v~~~~~~~~L~~---l~d---~~G~~-i~--~~~----~~~l~-G~Pv~ 213 (297) T protein:vir:95 157 NYDNILKLQDALY-------D--ADVEPNAFVSKIQNRSALRE---ARD---GNKVS-IY--DKA----ANTID-GITTV 213 (297) T ss_pred CHHHHHHHHHHhh-------h--ccCCcCEEEEcHHHHHHHHH---hhc---cCCce-ee--cCC----CCccc-ceeeE Confidence 1122222323332 1 12344568899999888775 211 11110 00 111 13443 34665 Q ss_pred Eeccccccc------ccceEEEEEecCCCccceeEEccccccccccccCCc-----ccc-ceeee--eeeeee-eecccc Q lcl|NC_015286. 366 VDPYSANVA------DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPD-----TFQ-PKIGF--KTRYGM-VSNPFA 430 (457) Q Consensus 366 ~D~y~~~~~------~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~-----s~q-P~~g~--~tRY~l-~~nP~~ 430 (457) .-+..+... ++.++++|..++.+.+-. .+. ......|+. -|| =.++| ..|++. +.||-+ T Consensus 214 ~~~~~~~~~~~~~~gd~s~~~~~~~~~~~i~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~v~~~~a 287 (297) T protein:vir:95 214 DLKSARFEKGDLLAGDFDNLIYGVPYNITYKIS----EEG--QISTITNADGTPINLFEQEMIAIRATMDIAVMITKTDA 287 (297) T ss_pred eecCCCCCCceEEEEecccEEEEEecCeEEEEe----ecc--ccccccccCccchhhhhcCcEEEEEEEEeccEeecccc Confidence 443322101 112233333332221100 000 000011221 122 11222 356666 556543 Q ss_pred ccccCccccc Q lcl|NC_015286. 431 QGLTQGSGAL 440 (457) Q Consensus 431 ~~~~~~~~~~ 440 (457) -..=....++ T Consensus 288 ~~~l~~at~~ 297 (297) T protein:vir:95 288 FAKLTPAERV 297 (297) T ss_pred eEEEeecCCC Confidence 2221112222 No 114 >protein:vir:102119 Length: 404 # NCBI annotation: phage major capsid protein, HK97 family # Family: family:all:21 # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699941;genbank:gi:110804052;genbank:GeneID:4206662 Probab=47.35 E-value=0.7 Score=21.42 Aligned_cols=322 Identities=14% Similarity=0.107 Sum_probs=124.8 Q ss_pred CchH--HHHHHhhHh-------hcccccc--ccccchhhhhhhhhccchHHHHH---HHHHHhhh--------------- Q lcl|NC_015286. 1 MSLQ--QLQEKWAPV-------LNHESLP--EIEDTHKRGVVAQLLENQEKAIT---EEASVLNE--------------- 51 (457) Q Consensus 1 ~~~~--~l~~~w~~~-------l~~~~~~--~i~~~~~~~v~~~~~~n~~~~~~---~~~~~~~e--------------- 51 (457) |+++ +|+++=+-+ +++.... |+.... +.| ..| +.|-+.+. +....+.+ T Consensus 1 M~k~l~el~~~~~~~~~e~~~~~~~~~~~~ee~~~~~-~e~-~~l-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (404) T protein:vir:10 1 MSKELRELLNQLDSKNKELNSLLNKDGVTAEELNKTS-NEI-DIL-QAKIEAQKRKENIENNFNEDNVKSLNTGKEENVI 77 (404) T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH-HHH-HHH-HHHHHHHHHHHHHHHHHhhhhccccccccchhhH Confidence 9975 666644433 2222211 111111 111 111 11111111 11111100 Q ss_pred ------------hh---h-ccccc----------cccccccccccccceehhhhHHHhhhHhhhhceeeecCCCcceeee Q lcl|NC_015286. 52 ------------TL---Q-TTGYT----------GASTATGPVAGFDPVLISLIRRSMPQLIAYDIAGVQPMTGPTGLIF 105 (457) Q Consensus 52 ------------~~---~-~~g~~----------~~st~tg~i~~~~P~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGLIF 105 (457) .. . ..+.. ..++++|.+.--....-.+++.+.......+++++.||+++.|-+- T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~gg~~vP~~~~~~ii~~~~~~~~l~~l~~~~~~~~~~g~~~ 157 (404) T protein:vir:10 78 YNGALFVRAIADNLLKQKNQRGLNLSEKEINAISENIDEDGGYAVPEDIQTKINTRLKDTTDLYNMVDYEPVFTRSGSRT 157 (404) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcchhhHHhhhccccCCCCceeechhHHHHHHHHHhhhhhHhhhhceeeccCCccceE Confidence 00 0 00100 0111222211101111234555556667889999999999988542 Q ss_pred EeeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcc Q lcl|NC_015286. 106 AMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEAL 185 (457) Q Consensus 106 AMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaL 185 (457) =.| . .+.. ...+- ..++.. T Consensus 158 ~~~--~---~~~~------------~~~~v--------------------------------------------~e~~~~ 176 (404) T protein:vir:10 158 YEK--R---SKQK------------PMKPL--------------------------------------------SENQQI 176 (404) T ss_pred EEE--e---cCCc------------ceeec--------------------------------------------cccccc Confidence 111 1 1100 00000 000000 Q ss_pred CCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeee Q lcl|NC_015286. 186 DDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGA 265 (457) Q Consensus 186 g~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk 265 (457) ..+.....|.+..|+..|. +-...+|-||.+|-. .+.++.|.+.|+..|...+|+.||.--- T Consensus 177 ~~~~~~~~f~~i~~~~~k~-------~~~~~iS~ell~ds~----~~l~~~i~~~la~~~~~~~~~~il~G~g------- 238 (404) T protein:vir:10 177 PTNGDNGKLERFNFKLKDL-------ADFMSIPNDLLKFAD----KSLEDWIINWFVDKVRITRNAEILYGAG------- 238 (404) T ss_pred cccccccceeeeEeeheee-------EeeehhhHHHHhhcH----HHHHHHHHHHHHHHHHHHHHHHHhhcCC------- Confidence 0011112344444444444 445678999998843 3578888888888888888888875321 Q ss_pred ccccccceeEeec------cccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCcc-EEEEchhHHHHHhhCCcceecccc Q lcl|NC_015286. 266 QNNTATAGVFDLD------VDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGN-ILICSADVASALGMAGVLDYSPAL 338 (457) Q Consensus 266 ~~~v~~~Gv~Dl~------~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn-~~i~S~~va~~L~~sg~l~~~~~~ 338 (457) .+....|+.... .....- ....+.+ ++.+ .. ..+.+| .+|||++..+.|.. +. .. T Consensus 239 -~~~~~~gi~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~-l~-~~~~~~~~~v~n~~~~~~L~~---lk---d~ 300 (404) T protein:vir:10 239 -GDEHATGIMTANKFKKITLPKSPA--LKDFKKC-------KNVE-LL-NVFKATSSWIVNQDGFNYLDS---LE---DK 300 (404) T ss_pred -CCCcccceeeccccceeecccccc--HHHHHHH-------HHhh-hh-ccccCCCEEEEcHHHHHHHHH---hh---cc Confidence 111122332221 111111 1111111 1111 11 223333 46899999888876 21 11 Q ss_pred cccccccccccCCceEEEEecCceEEEE-ecccccccccceEEEEEecCCCccceeEEcccccc---------ccc---- Q lcl|NC_015286. 339 NGNNALTGVDDTSSTLVGTLNGRIKVYV-DPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPL---------QQV---- 404 (457) Q Consensus 339 ~~~~~~~~~d~~~~~~~G~l~~~~~vy~-D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~---------~~~---- 404 (457) +|.-- ...+. .....++|.| ++|++ +...+..... +..++|+.+-.. ... T Consensus 301 ~G~~l-~~~~~-~~~~~~~l~G-~PV~~~~~~~~~~~~~-------------~~~~~~gd~s~~~~~~~~~~~~i~~~~~ 364 (404) T protein:vir:10 301 TGRPY-LQPDP-KDPTQYRFLG-LPVIELPNDLLLSTES-------------AIPVLLGDTKEAYKYVSDGAYELATTNI 364 (404) T ss_pred CCcee-eccCc-CCCCCccccc-eeeEEecccccCCCCC-------------ccEEEEEeccccEEEEEecceEEEEecc Confidence 11100 00111 1122345644 57664 3332211111 111222221110 000 Q ss_pred cccCCccccceeeeeeeeee-eeccccc-----cccCccc Q lcl|NC_015286. 405 RAINPDTFQPKIGFKTRYGM-VSNPFAQ-----GLTQGSG 438 (457) Q Consensus 405 ~~~Dp~s~qP~~g~~tRY~l-~~nP~~~-----~~~~~~~ 438 (457) ...+-...+=.+-...|++. +.+|-+- .....|+ T Consensus 365 ~~~~~~~~~~~~~~~~r~d~~v~~~~a~~~~~~~~aa~~~ 404 (404) T protein:vir:10 365 GAGAFETNTTKARIIMRIDGNVKDSEALLIAEIPVESVQA 404 (404) T ss_pred ccchhhcCceEEEEEEeeccEEecccceEEEEeecccCCC Confidence 00112234455667778887 5666532 1122233 No 115 >protein:vir:108211 Length: 318 # NCBI annotation: gp9 # Family: family:all:6420 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552338;genbank:gi:160700658;genbank:GeneID:5758931 Probab=43.58 E-value=0.84 Score=21.00 Aligned_cols=286 Identities=15% Similarity=0.112 Sum_probs=125.5 Q ss_pred CCCcceeeeEeeeeecccCCcccCccccccccccc-----------------cccccccccccccccccccccccccccc Q lcl|NC_015286. 97 MTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPN-----------------AGFSGGPGAYDPGASDATNDAEGTNPAL 159 (457) Q Consensus 97 mTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~-----------------t~fSG~~~~~~~~~~~~~~~~~gt~~~~ 159 (457) ||-|||++=+..-+ .- .-..|.+++. .-|...+. ..........+ T Consensus 1 ~~~~~~i~s~~~~~-------~i--tv~~ll~~P~~I~~~i~e~~~~~~iad~lf~~~~a----~~~~~v~f~~~----- 62 (318) T protein:vir:10 1 MTAPTGIVSVSDGP-------AI--TVRELVGNPLWIPTALKKMMVNQFISESLFRNGGA----NPNGVVAYNEG----- 62 (318) T ss_pred CCCCCcceeeecCC-------ce--ehHHhhCCchhHHHHHHHHHhccchhhhhhhcccc----cccceeEEEec----- Confidence 99999998664421 10 0122222221 00111000 00000000000 Q ss_pred ccccccccccccccccccchhhhhccCCCCCCcccccceeEE-EEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHH Q lcl|NC_015286. 160 LNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSI-EKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELA 238 (457) Q Consensus 160 ~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsI-eK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELa 238 (457) .....-..+|....+ ..|+..+-.. ++....+|.+.||-++|=|. +.-+++|+=.... T Consensus 63 --------------~p~~~~~d~e~VaEg---gEiP~~~~~~G~~~ia~~~K~G~~~~vS~Em----~~~n~~~~v~r~~ 121 (318) T protein:vir:10 63 --------------NPSFLEDDVADVAEF---GEIPVSAGARGLPRTAFAVKKALGVRVSKEM----IDENRVGAVNDQM 121 (318) T ss_pred --------------ccccccCcHhhccCc---ccccccCCCCCchhhhhhehhccceeccHHH----HhhcChhHHHHHH Confidence 000011122222111 1233333333 22222445788999999885 3447889999999 Q ss_pred HHHHHHHHHHhhHHHHhhhhheeeeeec-cccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEE Q lcl|NC_015286. 239 NILSTEILAEINREVVRTIYTNAVKGAQ-NNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILI 317 (457) Q Consensus 239 nILStEImlEINReIi~~l~tvA~rgk~-~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i 317 (457) .=|++-|...+|+.+++.|..-....-. -..++.+---..+..++-|.+..+..- .+..++-... +---|..|-|| T Consensus 122 ~~l~Nti~r~~d~~a~dal~sa~t~~~~~s~~w~~~~~~~~d~~~A~e~v~~a~~~--~~~a~~~~~~-~~~GY~pdtIV 198 (318) T protein:vir:10 122 LQLRNTFIRANDRSAKALLQSPIVPTLAVPTAWDNGGKVRTDIAIAIEQISTAAPT--AYPAGVGSSD-EYFGFIPDTIV 198 (318) T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCcCCCCcccccccchhhhhhhhhhhhh--hhhhhhhhhh-hccCccceeeE Confidence 9999999999999999987443221111 011111100001222333333222221 1111111111 24568899999 Q ss_pred EchhHHHHHhhCCcceeccccccccccc--ccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccceeEE Q lcl|NC_015286. 318 CSADVASALGMAGVLDYSPALNGNNALT--GVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFY 395 (457) Q Consensus 318 ~S~~va~~L~~sg~l~~~~~~~~~~~~~--~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfy 395 (457) .+|...+.|...- ++.+...+.+... ....+ ..|.|.+-| ++|..+++-| ...=|++ =+|. -| || T Consensus 199 lhP~~~~~l~~n~--~~~~~y~~~a~~~~~~~~~t-g~~~g~~lG-l~vi~s~~~p--~~~alvl--q~g~----vG-~~ 265 (318) T protein:vir:10 199 MHYALLPILMDNE--NFMKVYERNANYVSTAPDWT-GNFPGSVMG-LNVIRSRTFP--IDRVLIM--ERGT----VG-FY 265 (318) T ss_pred ECHHHHHHHhcch--hhhhhhhccchhhhhccccc-ccccceeec-eEEeecCccC--CCeeEEE--ecCC----cc-ee Confidence 9999998884432 1122221111111 12233 355676644 9999999877 2333333 1211 11 44 Q ss_pred cccccccccccc----CCccccceeeeeeee-----eeeeccccccccCcccccccccchheeeeeeeecC Q lcl|NC_015286. 396 CPYVPLQQVRAI----NPDTFQPKIGFKTRY-----GMVSNPFAQGLTQGSGALTANTNRYYRRVQVANLM 457 (457) Q Consensus 396 aPYv~~~~~~~~----Dp~s~qP~~g~~tRY-----~l~~nP~~~~~~~~~~~~~~~~n~~~~r~~~~~l~ 457 (457) +-=.|+.....+ || +.+|-..-..|+ --+..|++.- ++++|. T Consensus 266 ~d~~pl~~t~~~~egg~~-~g~~~~s~~~~~~~~~~~~V~~PkA~~-------------------~itgi~ 316 (318) T protein:vir:10 266 SDTRPLQFTALYPEGNGP-NGGPTESYRADASHKRALAVDQPKAAL-------------------WLTGIV 316 (318) T ss_pred eccccceeeecccCCCCC-CCCcchhhheehheeeeeeeeCcceeE-------------------EEeecc Confidence 433344443333 34 244444433332 2244555321 111111 No 116 >protein:vir:1541 Length: 347 # NCBI annotation: major capsid protein 10A # Family: family:all:975 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052109;swissprot:trembl:q9t107;genbank:gi:9634035;uniprot:Q9T107;genbank:GeneID:1262383 Probab=36.47 E-value=1.2 Score=20.21 Aligned_cols=306 Identities=18% Similarity=0.091 Sum_probs=122.9 Q ss_pred eeeeecccCCcccCccccc---cccccc----ccccccccccccccccccccccccccccccccccccccccccccccch Q lcl|NC_015286. 107 MRTNYGAERDPAASGYDEA---FFNEPN----AGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTT 179 (457) Q Consensus 107 MRsrY~~~~g~~~~~~~EA---lfnEa~----t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~T 179 (457) |= ++.++..-+..-. ...+++ -.|+|..-..... ..... +-........|.... ...-|-.+ T Consensus 1 ma----~~~~~~~~~t~~~~~~~~~~~~a~~ie~f~g~V~~~f~~-~s~~~-----~~~~~~~~~~G~sv~-i~~ig~~t 69 (347) T protein:vir:15 1 MA----NIQGGQQIGTNQGKGQSAADKLALFLKVFGGEVLTAFAR-TSVTM-----PRHMLRSIASGKSAQ-FPVIGRTK 69 (347) T ss_pred CC----ccccCCccccccccCCCcchHHHHHHHHHHHHHHHHHHH-hhhhh-----hccccccccccceeE-eeecccee Confidence 11 1111100000000 000000 0000000000000 00000 000000000000000 00011111 Q ss_pred hh----hhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHh Q lcl|NC_015286. 180 AT----AEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVR 255 (457) Q Consensus 180 a~----aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~ 255 (457) .. ++.+.....+....|+-++||.+.. +..-|+=.-+.++ | .|-..|+..=....++..+++-|++ T Consensus 70 ~~~~~~g~~l~~~~~~~~~~e~~ltID~~~~--------~~~~VddlD~~q~-~-~D~~~~~~~~~g~aLA~~~D~~i~~ 139 (347) T protein:vir:15 70 AAYLKPGENLDDKRKDIKHTEKVIHIDGLLT--------ADVLIYDIEDAMN-H-YDVRAEYTAQLGESLAMAADGAVLA 139 (347) T ss_pred eeeeccCCCCCCCCCCCccceEEEEechhhh--------hhHHhhhHHHHhc-C-CcchHHHHHHHHHHHHHHHHHHHHH Confidence 11 1111111112356788888887532 2233333333333 3 6888999999999999999999999 Q ss_pred hhhheee--eeecccc---ccceeEeeccccch-hHHHHHHHHHHHHHHHHHHHHHH-hcccCCccEEEEchhHHHHHhh Q lcl|NC_015286. 256 TIYTNAV--KGAQNNT---ATAGVFDLDVDSNG-RWSVEKFKGLLFQIERDANAIGQ-QTRRGKGNILICSADVASALGM 328 (457) Q Consensus 256 ~l~tvA~--rgk~~~v---~~~Gv~Dl~~~~~g-rw~~e~~k~l~~qi~~ean~i~~-~T~rg~gn~~i~S~~va~~L~~ 328 (457) .|...+. +....++ ...++......+.+ ....+.....+|....+|.+..- +---=.|.|+|++|+..+.|-. T Consensus 140 ~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~a~~~Lde~~VP~~gR~~vv~P~~y~~LL~ 219 (347) T protein:vir:15 140 ELAGLVNLPDASNENIEGLGKPTVLTLVKPTTGDLTDPVELGKAIIAQLTIARASLTKNYVPAADRTFYTTPDNYSAILA 219 (347) T ss_pred HHHHHhhccccccccccccCccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcCCCccCCEEEeCHHHHHHHhc Confidence 8864432 1112222 22233222222111 11122222223444444443322 2233468999999999977755 Q ss_pred CCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccce---EEEEEec-----CCC-------cccee Q lcl|NC_015286. 329 AGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHY---YVAGYKG-----TSP-------YDAGL 393 (457) Q Consensus 329 sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY---~~vG~KG-----~~~-------~d~gl 393 (457) .. ++..... .. ..+.....+|.+. +++||.-...|..+.-+. .+.|-+. .+. -..+| T Consensus 220 ~~--~~~~~d~----~~-~~~~~~G~Vg~i~-G~~V~~Sn~lp~~~~t~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~l 291 (347) T protein:vir:15 220 AL--MPNAANY----QA-LIDHERGTIRNVM-GFEVVEVPHLTAGGAGDTREDAPADQKHAFPATSSTTVKVALDNVVGL 291 (347) T ss_pred cc--ccccccc----cc-cccccceEEEEEe-ceEEEecccccccccccccccccccccccccccccceeeeccccceee Confidence 32 2222211 11 2234567889985 799999876663322111 1222221 111 12466 Q ss_pred EEccccc----cccc---cccCCccccceeeeeeeeee-eeccccccccCccccccc Q lcl|NC_015286. 394 FYCPYVP----LQQV---RAINPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGALTA 442 (457) Q Consensus 394 fyaPYv~----~~~~---~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~~~ 442 (457) ||.|... ++++ +..|+..|-=.|=.+..||- +.+|-.-..= .--++.. T Consensus 292 ~~h~~A~g~v~~~~~~~e~~~~~~~~~d~i~~~~~~G~~vlrP~~av~~-~~~~~~~ 347 (347) T protein:vir:15 292 FQHRSAVGTVKLKDLALERARRANYQADQIIAKYAMGHGGLRPEAAGAI-VLPKVSE 347 (347) T ss_pred eeccceeeeeEeeceeeeecccchhhhhhhehhhhcCCceeccccEEEE-ecCCCCC Confidence 6666532 2222 12366666666655666666 5566533110 0000000 No 117 >protein:vir:3136 Length: 322 # NCBI annotation: hypothetical protein # Family: family:all:11728 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640318;genbank:gi:21234405;genbank:GeneID:956058 Probab=34.16 E-value=1.3 Score=19.94 Aligned_cols=293 Identities=13% Similarity=0.068 Sum_probs=114.3 Q ss_pred cCCcccCccccccc-cccccccccccccccccccc--ccccccccccccccccccccccccccccccchhhhhccCCCCC Q lcl|NC_015286. 114 ERDPAASGYDEAFF-NEPNAGFSGGPGAYDPGASD--ATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSS 190 (457) Q Consensus 114 ~~g~~~~~~~EAlf-nEa~t~fSG~~~~~~~~~~~--~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~ 190 (457) .+.+..++...||| .|..+..--..-........ ...+....+..-++.....+...|.....+ ..+.+. T Consensus 1 ~~~~n~ts~~qafi~~EiWsa~il~~l~~~Lv~~~~~~~~d~g~GDtV~InsIg~~tV~dY~~~~~i---~~d~lt---- 73 (322) T protein:vir:31 1 MSTGNNTSNTQALIVSEIWADEIEDILHEKLLDVNIARVVDFPDGDKLTIPSVGTPVVRSRPEQGDF---TFDNLD---- 73 (322) T ss_pred CCCCCCcccceEEeehhhhHHHHHHHhhhhhhhhhhhcccccCCCCeEEeccccccccccccCCCCc---ccccCC---- Confidence 12222344456666 44432221100000000000 000000011111222222222222222221 112121 Q ss_pred CcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccc Q lcl|NC_015286. 191 NTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTA 270 (457) Q Consensus 191 ~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~ 270 (457) =.|..+.||+. |-=+++ --|-+++-..|-........+..++.++.+-|..-|.+-|......+. T Consensus 74 ---t~~~~l~IDq~----KYfaf~-------VdDD~~Qa~~dl~~~~~~~aa~ala~~~D~fva~lL~~gA~~~~~~~~- 138 (322) T protein:vir:31 74 ---TGEISIILRDE----VYAGNA-------ISKKLRQDSRWISNVGAMLPAEQARAIMERYQTDLLALGNAQFAGQND- 138 (322) T ss_pred ---CceEEEEEehh----hhhccc-------cchhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC- Confidence 13456666652 111111 112223333444555566667777777787777766665533222111 Q ss_pred cceeEee-----ccccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccc---- Q lcl|NC_015286. 271 TAGVFDL-----DVDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGN---- 341 (457) Q Consensus 271 ~~Gv~Dl-----~~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~---- 341 (457) ..-+.|. ..-+++--+...+..|..++++. .---.|.|+|.||.+.+.|...+.. +-.+... T Consensus 139 p~vin~~~~~iv~~gt~~~~ay~~lv~l~~kLdka-------nVP~~gR~vVV~P~~~~~L~~i~~~--~~l~~D~rf~~ 209 (322) T protein:vir:31 139 PNVINGVPHRFVGTGTDQTMDVTDFSRVNYVMTQS-------KMPMGGMIGIIDPSVAHHLETITNI--SNISNNPRWEG 209 (322) T ss_pred cceecCCccceeccCCCchhhHHHHHHHHHHhccc-------cCCCCCeEEEeCchhhhhhhhhhhh--hhhhccccccc Confidence 1111111 11122333444555554444332 3566789999999999888553322 1100000 Q ss_pred ccccccccCCceEEEEecCceEEEEecccccccccceEEEEEecCCCccc---eeEEc--c---------cccccccccc Q lcl|NC_015286. 342 NALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKHYYVAGYKGTSPYDA---GLFYC--P---------YVPLQQVRAI 407 (457) Q Consensus 342 ~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~---glfya--P---------Yv~~~~~~~~ 407 (457) ...++. ..+..|+|.+ .++.||+--..+. ...=++.|--|..- -+ .+|-| | .-.+.-..++ T Consensus 210 i~~sG~-a~g~~~Vg~~-~GF~V~~SN~l~~--~~~~i~aG~d~~~t-~ag~~n~f~~~~~~~~~~~~~~~~~l~~~e~~ 284 (322) T protein:vir:31 210 IVESGI-APDMQFVRSV-YGIDLFVSNLLAD--ANETINAGGDARST-TAGKCNMFMNVSDMGLLPFVVAWKEMPTTKSF 284 (322) T ss_pred cccccc-hhhHHHHHHH-hceeeeeeccccc--cccccccCcccccc-cceeecccccccchhhhhhhhHhhhhhhhhcc Confidence 000111 1133456665 3567777632210 01112222222111 01 12222 0 0011222333 Q ss_pred -CCccccceeeeeeeeee-eeccccccccCcccccccccch-he Q lcl|NC_015286. 408 -NPDTFQPKIGFKTRYGM-VSNPFAQGLTQGSGALTANTNR-YY 448 (457) Q Consensus 408 -Dp~s~qP~~g~~tRY~l-~~nP~~~~~~~~~~~~~~~~n~-~~ 448 (457) |+++|---+--..|||- .+.|..-.. +.+..+. -| T Consensus 285 r~~~~~~d~~~~~~~~g~g~~r~e~l~~------~~a~~~~~~~ 322 (322) T protein:vir:31 285 IDDYNDDLNTATTARWGNGLVRDENLVC------VLANADKVTF 322 (322) T ss_pred cCccccccceeeeeeecceeecccceEE------EEeccccccC Confidence 89999888888999997 455542211 2222221 11 No 118 >protein:vir:98635 Length: 377 # NCBI annotation: major coat protein # Family: family:all:635 # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039923;genbank:gi:126011098;genbank:GeneID:4818471 Probab=31.21 E-value=1.5 Score=19.59 Aligned_cols=328 Identities=11% Similarity=0.052 Sum_probs=111.7 Q ss_pred CchHHHHHHhhH---hhccccccccccchhhhhhhhhccchHHHH----------------------HHHHHHhhhhhhc Q lcl|NC_015286. 1 MSLQQLQEKWAP---VLNHESLPEIEDTHKRGVVAQLLENQEKAI----------------------TEEASVLNETLQT 55 (457) Q Consensus 1 ~~~~~l~~~w~~---~l~~~~~~~i~~~~~~~v~~~~~~n~~~~~----------------------~~~~~~~~e~~~~ 55 (457) |+.+++.+.|.- +.++... +..+..+.+....+++...+.+ .|++++++++... T Consensus 3 i~~k~~~~~~~~~~~l~~~~~~-~~~~ee~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~lt~ee~~~~~~~~~~ 81 (377) T protein:vir:98 3 INLKELPKYREAVAELSAKISA-GATSEEQEKLFEAAFTTMGDEILAKNEEEMERMFDLRDKNRELTAEEIKFFNDIDKN 81 (377) T ss_pred CcHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCcccCHHHHHHHHHHHhc Confidence 445555544433 2111110 0000111111112221111111 0222222222111 Q ss_pred cccccccccccccccccceeh-hhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcccccccccccccc Q lcl|NC_015286. 56 TGYTGASTATGPVAGFDPVLI-SLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGF 134 (457) Q Consensus 56 ~g~~~~st~tg~i~~~~P~Lv-~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~f 134 (457) ++ .++.-...-+.++ .++++....-....+|-|+|++|.+-++. . . ..+ .|. + T Consensus 82 ~~------~~~gg~~vP~~~~~~I~~~l~~~s~i~~~~~v~~~~~~~~~~~---~--~--~~~------~a~-------w 135 (377) T protein:vir:98 82 VG------GKDKFKLLPEETMVQVFDDLVAEHPLLKVINFKNTSLRLKALT---A--E--TSG------TAV-------W 135 (377) T ss_pred cC------CCCCccccCHHHHHHHHHHHHHhhhhhhheeeEecCcceEEEE---e--c--CCc------cee-------E Confidence 11 0000001111122 12222222334456788899887653321 0 0 000 000 0 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeeccccc Q lcl|NC_015286. 135 SGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALK 214 (457) Q Consensus 135 SG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLK 214 (457) . .+.+... .+.+..|.++.|..-|... . T Consensus 136 ------------------------~--------------------~e~~~~~-~~~~~~f~~i~l~~~kl~a-------~ 163 (377) T protein:vir:98 136 ------------------------G--------------------DIFGEIK-GQLKQAFKEQDFSQFKLTA-------F 163 (377) T ss_pred ------------------------e--------------------ecccccC-cccCccceeEeecceeEEe-------e Confidence 0 0000010 1223467777777777654 2 Q ss_pred ceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhh--------hhhe---eeeeeccccccceeEeeccc-cc Q lcl|NC_015286. 215 AEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRT--------IYTN---AVKGAQNNTATAGVFDLDVD-SN 282 (457) Q Consensus 215 AEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~--------l~tv---A~rgk~~~v~~~Gv~Dl~~~-~~ 282 (457) ...|-||.+|- .+|.|+.|.+-|+..|..-++..||.- |++. ....+..+....++.+..+. .+ T Consensus 164 ~~is~elL~ds----~~~ie~~i~~~la~~~a~~~~~a~i~G~G~~qP~Gil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (377) T protein:vir:98 164 VVIPKDALKFG----PKWIKQFITEQLKEAIAVALELAIVKGDGLLQPVGLLKDLSQPTVDQSTGRDITTYKTDKEAIAD 239 (377) T ss_pred ecccHHhhhcc----HhHHHHHHHHHHHHHHHHHHhhceEeccCCCcceeeeecccccccccccccccccccchhhhHhh Confidence 35677777663 467899999999999999999998862 1111 11111111111221111000 00 Q ss_pred hhHHH--HHHHHHHHHHHHHHHHHHHhcccCCccEEE-EchhHHHHHhhCCcceecccccccccccccccCCceEEEEec Q lcl|NC_015286. 283 GRWSV--EKFKGLLFQIERDANAIGQQTRRGKGNILI-CSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLN 359 (457) Q Consensus 283 grw~~--e~~k~l~~qi~~ean~i~~~T~rg~gn~~i-~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~ 359 (457) --++. ...+...+-+.+....-.++-..+.|+++. +.|.-.-.+. |...-.+ ....++..|. T Consensus 240 l~~~~~~~~~~~a~~~m~~~t~~~~~klkd~~G~~i~~~n~~~~~~~~--------p~~~~~~-------~~G~~~t~lg 304 (377) T protein:vir:98 240 LSDLTPDNAPKKLVPVMKHLSVNDKKRPLKIAGQVKLILNPEDRWALE--------AQFTSRN-------QFGEYVTVLP 304 (377) T ss_pred hhhhchhHHHHHHHHHHHHHHHHHHhhhhccCCceEEEecccchhhcc--------ccccccC-------CCCccccccC Confidence 00000 001112222333333334556778999876 4443221111 1110000 0001111121 Q ss_pred CceEEEEecccccccccceEEEEEecCCC--ccceeEEccccccccccccCCcccc-ceeeeeee--e-eeeeccccccc Q lcl|NC_015286. 360 GRIKVYVDPYSANVADKHYYVAGYKGTSP--YDAGLFYCPYVPLQQVRAINPDTFQ-PKIGFKTR--Y-GMVSNPFAQGL 433 (457) Q Consensus 360 ~~~~vy~D~y~~~~~~~dY~~vG~KG~~~--~d~glfyaPYv~~~~~~~~Dp~s~q-P~~g~~tR--Y-~l~~nP~~~~~ 433 (457) =.++|..+.+.|. .-++.|.....- ...++-+..| |..-|. -.++|..+ + |-.+||-+-.. T Consensus 305 ~p~~vv~s~~~p~----~~i~fgdf~~Y~i~~r~~~~i~~~---------~~~~~~~d~~~f~~~~r~dg~~~~~~a~~v 371 (377) T protein:vir:98 305 HGITILESLAVET----GKAIAFVANRYDAFMATASTIEEY---------DQTFAMEDLQLYLTKNYFYGKAKDNHTAAL 371 (377) T ss_pred CCceEEecCCCCc----ccEEEEEecceeEEeecceEEEee---------chhhhhcCceEEEEEEEEcCEEeccCcEEE Confidence 1223333434332 113333321100 0011111111 111111 11223322 2 22444432211 Q ss_pred cCcccccccc Q lcl|NC_015286. 434 TQGSGALTAN 443 (457) Q Consensus 434 ~~~~~~~~~~ 443 (457) -+ +.-| T Consensus 372 l~----i~~~ 377 (377) T protein:vir:98 372 LT----LAGG 377 (377) T ss_pred EE----EecC Confidence 11 1111 No 119 >protein:vir:99675 Length: 324 # NCBI annotation: Major capsid protein # Family: family:all:975 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249589;genbank:gi:68299740;genbank:GeneID:3799990 Probab=27.68 E-value=1.8 Score=19.16 Aligned_cols=279 Identities=14% Similarity=0.084 Sum_probs=120.0 Q ss_pred ccccccccccccccccccccccccccccccchhhhhc-cCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHH Q lcl|NC_015286. 148 ATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEA-LDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLK 226 (457) Q Consensus 148 ~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEa-Lg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLk 226 (457) -.-...+.+.+-+.-....+...+ -.++. .++ -.+..=.|.-++||+. |-+..-++-.-|.+ T Consensus 1 ~vr~i~~g~s~~~~~iG~~~~~~~--------~~G~~l~~~-~~~~~~~e~~itID~~--------l~~~~~VdDiD~~q 63 (324) T protein:vir:99 1 MTRTITSGKSAQFPVMGRTKARYL--------KQGQSLDDG-REDIKHTEKVITIDGL--------LTTDVLIYDIEDAM 63 (324) T ss_pred CeeeeecCceEEEeeeeeeEeccc--------cCCCCcCCC-cCCcCcccEEEEecch--------hhhhhhhhhHHHHh Confidence 011111111111111100000000 01111 121 1122346777888864 34455555555666 Q ss_pred HhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeee---ccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHH Q lcl|NC_015286. 227 AIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGA---QNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANA 303 (457) Q Consensus 227 AiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk---~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~ 303 (457) + | .|...|.+.=...+++.++++=|++.|..++..-+ ..++.-.|-........+.-..+..-..+|.-.+++++ T Consensus 64 a-~-~Dlr~e~s~~~G~aLA~~~Dq~i~~~~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~dai~~a~~ 141 (324) T protein:vir:99 64 N-H-YDVRSEYSTQMGEALAMAADVANYAEMAKLVNSRKETTNENIEGLGAASLVKITGKKEDPAKYGTQVIQALTYARA 141 (324) T ss_pred c-C-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcccCCccceecccccccccccCHHHHHHHHHHHHH Confidence 6 5 89999999999999999999999988765553222 11121111100000010000001000112222233322 Q ss_pred HH-HhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEecccccccccc----- Q lcl|NC_015286. 304 IG-QQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVADKH----- 377 (457) Q Consensus 304 i~-~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~~~d----- 377 (457) .. .+----.|.|+|+||++-.+|-....+... +.. ..++.....+|.+ .+++||.-...|+.+..+ T Consensus 142 ~Lde~~VP~~gR~~vv~P~~y~~Ll~~~~~~~~------~~~-~~~~~~~G~V~~i-~Gf~V~~Sn~lp~~~~t~~~~a~ 213 (324) T protein:vir:99 142 AFAKKYIPAGDRTFYTDPDTYSAILAALMPNAA------NYA-ALIDPETGNIRNV-MGFEVVETPHMTAQMVTNPTDAF 213 (324) T ss_pred HHhhcCCCCCCCEEEeChHHHHHHhhccccccc------ccc-cccceecceEEEE-eceEEEecCCccccccccccccc Confidence 22 223344689999999999888654433221 111 1234555678888 679999887766432221 Q ss_pred -----eE------EEE--EecCCCccceeEEccccc----ccc---ccccCCccccceeeeeeeeee---eecccccc-- Q lcl|NC_015286. 378 -----YY------VAG--YKGTSPYDAGLFYCPYVP----LQQ---VRAINPDTFQPKIGFKTRYGM---VSNPFAQG-- 432 (457) Q Consensus 378 -----Y~------~vG--~KG~~~~d~glfyaPYv~----~~~---~~~~Dp~s~qP~~g~~tRY~l---~~nP~~~~-- 432 (457) ++ ..+ |+++..-..||||.|=.- +.+ -...|++.|-=. ++.+|.+ +.+|.+-+ T Consensus 214 ~~~~~~~~~~~~~~~~~ky~~d~~~~~gl~~~~~a~~tv~~~~~~~e~~~~~~~~~d~--i~~~~a~G~~~lRPe~a~~v 291 (324) T protein:vir:99 214 DGTGHIFPATGDSTTTGKMTVGADNVVGLFVHRSAVATLKLKDMALERARRPEYQADQ--IIAKYAMGHGGLRPEAVGAI 291 (324) T ss_pred cccccccccccccccccccccccCceeEEEEehhheEEEeeecceecceechhhHHHh--hhhhhhhcCcccccceEEEE Confidence 00 111 345544556788776531 111 112245444322 2333333 45664221 Q ss_pred -----cc----Cc-ccccccccchheeeeeeee Q lcl|NC_015286. 433 -----LT----QG-SGALTANTNRYYRRVQVAN 455 (457) Q Consensus 433 -----~~----~~-~~~~~~~~n~~~~r~~~~~ 455 (457) .+ ++ ...+-...--=--|...+- T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (324) T protein:vir:99 292 IFEDGETPAVAPDVITGVASFAAPASTRAKSSA 324 (324) T ss_pred EEccCccccccchhhhhhccccCcccceeeecC Confidence 10 00 0000000000000111111 No 120 >protein:vir:2430 Length: 318 # NCBI annotation: major head subunit # Family: family:all:507 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046832;genbank:gi:9630400;genbank:GeneID:1261582 Probab=27.04 E-value=1.9 Score=19.08 Aligned_cols=294 Identities=11% Similarity=0.010 Sum_probs=118.5 Q ss_pred hhhhhhhhhccchHHHHHHHHHHhhhhhhcccccccccccccccc-ccc-eehhhhHHHhhhHhhhhceeeecCCCccee Q lcl|NC_015286. 26 HKRGVVAQLLENQEKAITEEASVLNETLQTTGYTGASTATGPVAG-FDP-VLISLIRRSMPQLIAYDIAGVQPMTGPTGL 103 (457) Q Consensus 26 ~~~~v~~~~~~n~~~~~~~~~~~~~e~~~~~g~~~~st~tg~i~~-~~P-~Lv~l~RRa~~~LI~~DI~GVQPmTGPTGL 103 (457) -|+. .+.-.|++.+.. +++.+-.. .-| ..-.+++...+..+..+++.+.||++++.- T Consensus 1 ~~~~---------~~~~~e~~~~~~------------~~~~~~~~~ip~~~~~~ii~~~~~~~~l~~~~~~~~~~~~~~~ 59 (318) T protein:vir:24 1 MAAG---------TAFAVDHAQIAQ------------TGDTMFKGYLEPEQAKDYFAEAEKTSIVQQFAQKVPMGTTGQK 59 (318) T ss_pred CCCC---------CCCCHHHHHhhc------------ccCcccceeechhHHHHHHHHHHhhchhhhhcceeeccCCceE Confidence 0000 000011222111 11111111 111 112244555567788899999999887533 Q ss_pred eeEeeeeecccCCcccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhh Q lcl|NC_015286. 104 IFAMRTNYGAERDPAASGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAE 183 (457) Q Consensus 104 IFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aE 183 (457) |. +... ++ ++ . .. +| T Consensus 60 ip----~~~~--~~------~a-------~--------------------------------------------~v--~E 74 (318) T protein:vir:24 60 IP----HWVG--DV------SA-------Q--------------------------------------------WI--GE 74 (318) T ss_pred EE----EEeC--Cc------ce-------E--------------------------------------------Ee--cC Confidence 21 1110 00 00 0 00 01 Q ss_pred ccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeee Q lcl|NC_015286. 184 ALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVK 263 (457) Q Consensus 184 aLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~r 263 (457) +..+++...++++++.+.|..+-...+|-||.+|-. .|.+++|.+.|+..|...|++.+|.---+ T Consensus 75 -------g~~~~~~~~~f~~i~~~~~k~~~~~~iS~e~l~ds~----~~~~~~i~~~l~~~~~~~~d~a~l~G~g~---- 139 (318) T protein:vir:24 75 -------GDMKPITKGNMTSQTIAPHKIATIFVASAETVRANP----ANYLGTMRTKVATAFAMAFDGAAMHGTDS---- 139 (318) T ss_pred -------CccccccccceeEEEEeeEEEEEeehhhHHHhhcCh----HHHHHHHHHHHHHHHHHHHHHhhhcccCC---- Confidence 012333334446666666666667789999999854 57999999999999999999999853211 Q ss_pred eecccccc-ceeEeec-cccchhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceeccccccc Q lcl|NC_015286. 264 GAQNNTAT-AGVFDLD-VDSNGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGN 341 (457) Q Consensus 264 gk~~~v~~-~Gv~Dl~-~~~~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~ 341 (457) ++..++.. ....... .....-|.-.....+++.+ .........+|+|+.....|.. ++-+ +|. T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~n~~~~~~L~~---lkd~---~G~ 204 (318) T protein:vir:24 140 PFPTYIGQTTKAISIADTTGATTVYDQVAVNGLSLL---------VNDGKKWTHTLLDDITEPILNG---AKDQ---NGR 204 (318) T ss_pred CCCcccccccccccccccccccchHHHHHHHHHHhh---------ccccCCCCEEEEcHHHHHHHHH---hhcc---CCc Confidence 11111100 0000000 0011111111111111111 2233445678999999988875 2110 110 Q ss_pred ccccccccCCce---E-EEEecCceEEEEeccccccc------ccceEEEEEecCCCccceeEEccccccccccccCCc- Q lcl|NC_015286. 342 NALTGVDDTSST---L-VGTLNGRIKVYVDPYSANVA------DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPD- 410 (457) Q Consensus 342 ~~~~~~d~~~~~---~-~G~l~~~~~vy~D~y~~~~~------~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~- 410 (457) .....+.+... + -+.+ .+++|++.+..+... ++.++++|..+..+.+-+= +.......|+. T Consensus 205 -~l~~~~~~~~~~~~~~~~~i-~g~pv~~~~~~~~~~~~~~~gdfs~~~~~~~~~l~i~~~~------~~~~~~~~~~~~ 276 (318) T protein:vir:24 205 -PLFIESTYGEAASPFRSGRI-VARPTILSDHVVEGTTVGFMGDFSQLIWGQIGGLSFDVTD------QATLNLGTVESP 276 (318) T ss_pred -eeecCccccCccccccCceE-EEEeeEEeCCCCCCccEEEEeecceEEEEEecCeEEEEee------ccceeccccccc Confidence 00000111111 1 1222 235677766554211 1112223333222211000 00000001111 Q ss_pred -------cccceeeeeeeeee-eeccccc-cccCcccccccc Q lcl|NC_015286. 411 -------TFQPKIGFKTRYGM-VSNPFAQ-GLTQGSGALTAN 443 (457) Q Consensus 411 -------s~qP~~g~~tRY~l-~~nP~~~-~~~~~~~~~~~~ 443 (457) +-|=.+=...|++. +.+|-+- .++...+.--.| T Consensus 277 ~~~~~f~~~~~~~r~~~r~d~~v~~~~a~~~i~~~~a~~~~~ 318 (318) T protein:vir:24 277 NFVSLWQHNLVAVRVEAEYAFHCNDAEAFVALTNVVSGGGEG 318 (318) T ss_pred cchhhhhcCcEEEEEEEEEccEEecccceEEEEeeccCCCCC Confidence 11233334567777 4565422 122211111112 No 121 >protein:vir:94424 Length: 387 # NCBI annotation: ORF010 # Family: family:all:658 # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240005;genbank:gi:66395666;genbank:GeneID:5133084 Probab=27.02 E-value=1.9 Score=19.07 Aligned_cols=313 Identities=12% Similarity=0.119 Sum_probs=113.4 Q ss_pred CchHH----------HHHHhhHhhcc-c--------cccccccchhhhhhhhhccchHHHHHHHHHHhhhhh-------- Q lcl|NC_015286. 1 MSLQQ----------LQEKWAPVLNH-E--------SLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETL-------- 53 (457) Q Consensus 1 ~~~~~----------l~~~w~~~l~~-~--------~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~-------- 53 (457) .+.|+ |.+++.-+-+. + ..+.+...... ..+.++..+...++++... T Consensus 34 ~~~eei~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~r~~~~~~~~~~~ 107 (387) T protein:vir:94 34 IDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDKGEAYQS------LSDNEKMVKAKAEFYRHAILPNEFEKP 107 (387) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC------CchhHHHHHHHHHHHHHHHhhhhHHHH Confidence 22222 33444332110 0 00000000000 0001111111111111000 Q ss_pred -----hccccccccccccccccccceehh------hhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcc Q lcl|NC_015286. 54 -----QTTGYTGASTATGPVAGFDPVLIS------LIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGY 122 (457) Q Consensus 54 -----~~~g~~~~st~tg~i~~~~P~Lv~------l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~ 122 (457) .......+.+.++ + ..||+ ++++........+++.|.|+++.+.- |-.+. ++. T Consensus 108 ~~~~~~~~~a~~~~~~~~----g-G~lIP~~~~~~Ii~~~~~~~~l~~~~~~~~~~~~~~p----~~~~~---~~~---- 171 (387) T protein:vir:94 108 SMEAQRLLHALPTGNDSG----G-DKLLPKTLSKEIVSEPFAKNQLREKARLTNIKGLEIP----RVSYT---LDD---- 171 (387) T ss_pred HHHHHHHHhhhccCCCCC----C-ceeechhHHHHHHHHHHhhchhhhhceeeecCCceee----eeecc---CCc---- Confidence 0000011111111 1 12222 33334444566889999988754321 11110 000 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEE Q lcl|NC_015286. 123 DEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIE 202 (457) Q Consensus 123 ~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIe 202 (457) + . ...+++.... ....|.+..|.+ T Consensus 172 --a-------~--------------------------------------------~v~Eg~~~~~--~~~~f~~v~l~~- 195 (387) T protein:vir:94 172 --D-------D--------------------------------------------FITDVETAKE--LKAKGDTVKFTT- 195 (387) T ss_pred --c-------c--------------------------------------------cccccccccc--cccccceeeech- Confidence 0 0 0011111111 123344444444 Q ss_pred EEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccc-cceeEeecccc Q lcl|NC_015286. 203 KVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTA-TAGVFDLDVDS 281 (457) Q Consensus 203 K~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~-~~Gv~Dl~~~~ 281 (457) |.-+-...+|-||.+|- ..|.++.|.+-|+..|..-.|..++-.- ...|+..++. ..++.-.. T Consensus 196 ------~k~~~~i~iS~ell~ds----~~~l~~~i~~~la~~~~~~e~~~~~~~g---~g~g~~~g~~~~~~~~~~~--- 259 (387) T protein:vir:94 196 ------NKFKVFAAISDTVIHGS----DVDLVNWVENALQSGLAAKERKDALAVS---PKSGLEHMSFYNGSVKEVE--- 259 (387) T ss_pred ------heeeeechhhHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHhHhhcC---CCccccceeeecccccccc--- Confidence 44444578999999985 3467888999998888776666665322 2222222221 12222111 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCc Q lcl|NC_015286. 282 NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGR 361 (457) Q Consensus 282 ~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~ 361 (457) +--..+....|++.+... -+..+.|++-+...+.++.. ++- .++ ... ... -++|. + T Consensus 260 -~~~~~d~i~~~~~~l~~~--------y~~na~~imn~~t~~~~~~~---~~~---~~~--~~~--~~~----~~~ll-G 315 (387) T protein:vir:94 260 -GADMYDAIINALADLHED--------YRDNATIYMRYADYVKIISV---LSN---GTT--NFF--DTP----AEKVF-G 315 (387) T ss_pred -ccchHHHHHHHHhccChh--------hhcCCEEEEechHHHHHHHH---Hhc---CCC--ccc--ccC----Ccccc-c Confidence 111122333444444322 24466776655554554433 211 011 011 111 13566 4 Q ss_pred eEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc-cCcccc Q lcl|NC_015286. 362 IKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGA 439 (457) Q Consensus 362 ~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~ 439 (457) ++||+..+++. +++| + -+-||.=|-.....+.-|..+.+-.+-...|++. +++|-+-.+ +-+.+. T Consensus 316 ~PV~~~~~~~~------~~~G---D----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~Dg~v~~~~A~~~l~~ka~~ 382 (387) T protein:vir:94 316 KPVVFTDAAVK------PIVG---D----FNYFGINYDGTTYDTDKDVKKGEYLFVLTAWYDQQRTLDSAFRIAKAKENT 382 (387) T ss_pred cceEEecCCCc------eeee---c----hhhhhhhhhhhhheecccccCCceEEEEEEEeCcEeechhheEEEEeecCC Confidence 68888766542 3444 1 1112221110000001123333333333447776 666653311 110000 Q ss_pred ccccc Q lcl|NC_015286. 440 LTANT 444 (457) Q Consensus 440 ~~~~~ 444 (457) .-.-+ T Consensus 383 ~~~~~ 387 (387) T protein:vir:94 383 GPLPS 387 (387) T ss_pred CCCCC Confidence 00000 No 122 >protein:vir:96978 Length: 387 # NCBI annotation: ORF009 # Family: family:all:658 # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239859;genbank:gi:66395517;genbank:GeneID:5133011 Probab=27.02 E-value=1.9 Score=19.07 Aligned_cols=313 Identities=12% Similarity=0.119 Sum_probs=113.4 Q ss_pred CchHH----------HHHHhhHhhcc-c--------cccccccchhhhhhhhhccchHHHHHHHHHHhhhhh-------- Q lcl|NC_015286. 1 MSLQQ----------LQEKWAPVLNH-E--------SLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETL-------- 53 (457) Q Consensus 1 ~~~~~----------l~~~w~~~l~~-~--------~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~-------- 53 (457) .+.|+ |.+++.-+-+. + ..+.+...... ..+.++..+...++++... T Consensus 34 ~~~eei~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~r~~~~~~~~~~~ 107 (387) T protein:vir:96 34 IDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDKGEAYQS------LSDNEKMVKAKAEFYRHAILPNEFEKP 107 (387) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC------CchhHHHHHHHHHHHHHHHhhhhHHHH Confidence 22222 33444332110 0 00000000000 0001111111111111000 Q ss_pred -----hccccccccccccccccccceehh------hhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcc Q lcl|NC_015286. 54 -----QTTGYTGASTATGPVAGFDPVLIS------LIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGY 122 (457) Q Consensus 54 -----~~~g~~~~st~tg~i~~~~P~Lv~------l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~ 122 (457) .......+.+.++ + ..||+ ++++........+++.|.|+++.+.- |-.+. ++. T Consensus 108 ~~~~~~~~~a~~~~~~~~----g-G~lIP~~~~~~Ii~~~~~~~~l~~~~~~~~~~~~~~p----~~~~~---~~~---- 171 (387) T protein:vir:96 108 SMEAQRLLHALPTGNDSG----G-DKLLPKTLSKEIVSEPFAKNQLREKARLTNIKGLEIP----RVSYT---LDD---- 171 (387) T ss_pred HHHHHHHHhhhccCCCCC----C-ceeechhHHHHHHHHHHhhchhhhhceeeecCCceee----eeecc---CCc---- Confidence 0000011111111 1 12222 33334444566889999988754321 11110 000 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEE Q lcl|NC_015286. 123 DEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIE 202 (457) Q Consensus 123 ~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIe 202 (457) + . ...+++.... ....|.+..|.+ T Consensus 172 --a-------~--------------------------------------------~v~Eg~~~~~--~~~~f~~v~l~~- 195 (387) T protein:vir:96 172 --D-------D--------------------------------------------FITDVETAKE--LKAKGDTVKFTT- 195 (387) T ss_pred --c-------c--------------------------------------------cccccccccc--cccccceeeech- Confidence 0 0 0011111111 123344444444 Q ss_pred EEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccc-cceeEeecccc Q lcl|NC_015286. 203 KVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTA-TAGVFDLDVDS 281 (457) Q Consensus 203 K~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~-~~Gv~Dl~~~~ 281 (457) |.-+-...+|-||.+|- ..|.++.|.+-|+..|..-.|..++-.- ...|+..++. ..++.-.. T Consensus 196 ------~k~~~~i~iS~ell~ds----~~~l~~~i~~~la~~~~~~e~~~~~~~g---~g~g~~~g~~~~~~~~~~~--- 259 (387) T protein:vir:96 196 ------NKFKVFAAISDTVIHGS----DVDLVNWVENALQSGLAAKERKDALAVS---PKSGLEHMSFYNGSVKEVE--- 259 (387) T ss_pred ------heeeeechhhHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHhHhhcC---CCccccceeeecccccccc--- Confidence 44444578999999985 3467888999998888776666665322 2222222221 12222111 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCc Q lcl|NC_015286. 282 NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGR 361 (457) Q Consensus 282 ~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~ 361 (457) +--..+....|++.+... -+..+.|++-+...+.++.. ++- .++ ... ... -++|. + T Consensus 260 -~~~~~d~i~~~~~~l~~~--------y~~na~~imn~~t~~~~~~~---~~~---~~~--~~~--~~~----~~~ll-G 315 (387) T protein:vir:96 260 -GADMYDAIINALADLHED--------YRDNATIYMRYADYVKIISV---LSN---GTT--NFF--DTP----AEKVF-G 315 (387) T ss_pred -ccchHHHHHHHHhccChh--------hhcCCEEEEechHHHHHHHH---Hhc---CCC--ccc--ccC----Ccccc-c Confidence 111122333444444322 24466776655554554433 211 011 011 111 13566 4 Q ss_pred eEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc-cCcccc Q lcl|NC_015286. 362 IKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGA 439 (457) Q Consensus 362 ~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~ 439 (457) ++||+..+++. +++| + -+-||.=|-.....+.-|..+.+-.+-...|++. +++|-+-.+ +-+.+. T Consensus 316 ~PV~~~~~~~~------~~~G---D----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~Dg~v~~~~A~~~l~~ka~~ 382 (387) T protein:vir:96 316 KPVVFTDAAVK------PIVG---D----FNYFGINYDGTTYDTDKDVKKGEYLFVLTAWYDQQRTLDSAFRIAKAKENT 382 (387) T ss_pred cceEEecCCCc------eeee---c----hhhhhhhhhhhhheecccccCCceEEEEEEEeCcEeechhheEEEEeecCC Confidence 68888766542 3444 1 1112221110000001123333333333447776 666653311 110000 Q ss_pred ccccc Q lcl|NC_015286. 440 LTANT 444 (457) Q Consensus 440 ~~~~~ 444 (457) .-.-+ T Consensus 383 ~~~~~ 387 (387) T protein:vir:96 383 GPLPS 387 (387) T ss_pred CCCCC Confidence 00000 No 123 >protein:vir:2685 Length: 387 # NCBI annotation: hypothetical protein # Family: family:all:658 # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075504;genbank:gi:12719433;genbank:GeneID:920169 Probab=27.02 E-value=1.9 Score=19.07 Aligned_cols=313 Identities=12% Similarity=0.119 Sum_probs=113.4 Q ss_pred CchHH----------HHHHhhHhhcc-c--------cccccccchhhhhhhhhccchHHHHHHHHHHhhhhh-------- Q lcl|NC_015286. 1 MSLQQ----------LQEKWAPVLNH-E--------SLPEIEDTHKRGVVAQLLENQEKAITEEASVLNETL-------- 53 (457) Q Consensus 1 ~~~~~----------l~~~w~~~l~~-~--------~~~~i~~~~~~~v~~~~~~n~~~~~~~~~~~~~e~~-------- 53 (457) .+.|+ |.+++.-+-+. + ..+.+...... ..+.++..+...++++... T Consensus 34 ~~~eei~~~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~r~~~~~~~~~~~ 107 (387) T protein:vir:26 34 IDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDKGEAYQS------LSDNEKMVKAKAEFYRHAILPNEFEKP 107 (387) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCC------CchhHHHHHHHHHHHHHHHhhhhHHHH Confidence 22222 33444332110 0 00000000000 0001111111111111000 Q ss_pred -----hccccccccccccccccccceehh------hhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCcc Q lcl|NC_015286. 54 -----QTTGYTGASTATGPVAGFDPVLIS------LIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGY 122 (457) Q Consensus 54 -----~~~g~~~~st~tg~i~~~~P~Lv~------l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~ 122 (457) .......+.+.++ + ..||+ ++++........+++.|.|+++.+.- |-.+. ++. T Consensus 108 ~~~~~~~~~a~~~~~~~~----g-G~lIP~~~~~~Ii~~~~~~~~l~~~~~~~~~~~~~~p----~~~~~---~~~---- 171 (387) T protein:vir:26 108 SMEAQRLLHALPTGNDSG----G-DKLLPKTLSKEIVSEPFAKNQLREKARLTNIKGLEIP----RVSYT---LDD---- 171 (387) T ss_pred HHHHHHHHhhhccCCCCC----C-ceeechhHHHHHHHHHHhhchhhhhceeeecCCceee----eeecc---CCc---- Confidence 0000011111111 1 12222 33334444566889999988754321 11110 000 Q ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEE Q lcl|NC_015286. 123 DEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIE 202 (457) Q Consensus 123 ~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIe 202 (457) + . ...+++.... ....|.+..|.+ T Consensus 172 --a-------~--------------------------------------------~v~Eg~~~~~--~~~~f~~v~l~~- 195 (387) T protein:vir:26 172 --D-------D--------------------------------------------FITDVETAKE--LKAKGDTVKFTT- 195 (387) T ss_pred --c-------c--------------------------------------------cccccccccc--cccccceeeech- Confidence 0 0 0011111111 123344444444 Q ss_pred EEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccc-cceeEeecccc Q lcl|NC_015286. 203 KVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTA-TAGVFDLDVDS 281 (457) Q Consensus 203 K~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~-~~Gv~Dl~~~~ 281 (457) |.-+-...+|-||.+|- ..|.++.|.+-|+..|..-.|..++-.- ...|+..++. ..++.-.. T Consensus 196 ------~k~~~~i~iS~ell~ds----~~~l~~~i~~~la~~~~~~e~~~~~~~g---~g~g~~~g~~~~~~~~~~~--- 259 (387) T protein:vir:26 196 ------NKFKVFAAISDTVIHGS----DVDLVNWVENALQSGLAAKERKDALAVS---PKSGLEHMSFYNGSVKEVE--- 259 (387) T ss_pred ------heeeeechhhHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHhHhhcC---CCccccceeeecccccccc--- Confidence 44444578999999985 3467888999998888776666665322 2222222221 12222111 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCc Q lcl|NC_015286. 282 NGRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGR 361 (457) Q Consensus 282 ~grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~ 361 (457) +--..+....|++.+... -+..+.|++-+...+.++.. ++- .++ ... ... -++|. + T Consensus 260 -~~~~~d~i~~~~~~l~~~--------y~~na~~imn~~t~~~~~~~---~~~---~~~--~~~--~~~----~~~ll-G 315 (387) T protein:vir:26 260 -GADMYDAIINALADLHED--------YRDNATIYMRYADYVKIISV---LSN---GTT--NFF--DTP----AEKVF-G 315 (387) T ss_pred -ccchHHHHHHHHhccChh--------hhcCCEEEEechHHHHHHHH---Hhc---CCC--ccc--ccC----Ccccc-c Confidence 111122333444444322 24466776655554554433 211 011 011 111 13566 4 Q ss_pred eEEEEecccccccccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc-cCcccc Q lcl|NC_015286. 362 IKVYVDPYSANVADKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL-TQGSGA 439 (457) Q Consensus 362 ~~vy~D~y~~~~~~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~-~~~~~~ 439 (457) ++||+..+++. +++| + -+-||.=|-.....+.-|..+.+-.+-...|++. +++|-+-.+ +-+.+. T Consensus 316 ~PV~~~~~~~~------~~~G---D----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~Dg~v~~~~A~~~l~~ka~~ 382 (387) T protein:vir:26 316 KPVVFTDAAVK------PIVG---D----FNYFGINYDGTTYDTDKDVKKGEYLFVLTAWYDQQRTLDSAFRIAKAKENT 382 (387) T ss_pred cceEEecCCCc------eeee---c----hhhhhhhhhhhhheecccccCCceEEEEEEEeCcEeechhheEEEEeecCC Confidence 68888766542 3444 1 1112221110000001123333333333447776 666653311 110000 Q ss_pred ccccc Q lcl|NC_015286. 440 LTANT 444 (457) Q Consensus 440 ~~~~~ 444 (457) .-.-+ T Consensus 383 ~~~~~ 387 (387) T protein:vir:26 383 GPLPS 387 (387) T ss_pred CCCCC Confidence 00000 No 124 >protein:vir:2201 Length: 345 # NCBI annotation: major capsid protein # Family: family:all:975 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041998;swissprot:sw:p19726;genbank:gi:9627469;goa:P19726;uniprot:P19726;genbank:GeneID:1261026 Probab=26.79 E-value=1.9 Score=19.04 Aligned_cols=300 Identities=17% Similarity=0.146 Sum_probs=125.7 Q ss_pred CCCcceeeeEeeeeecccCCccc--Cccccccc-----cccccccccccccccccccccccccccccccccccccccccc Q lcl|NC_015286. 97 MTGPTGLIFAMRTNYGAERDPAA--SGYDEAFF-----NEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYE 169 (457) Q Consensus 97 mTGPTGLIFAMRsrY~~~~g~~~--~~~~EAlf-----nEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~ 169 (457) |+.-+|. ++++...++.. .+.+-+|| .|.++.|.-.+-... -.......+.+.+-+.-... .. T Consensus 1 ~~~~~~~-----~~~~~~~~~~~~~~~~~~al~le~f~geV~~~f~~~s~~~~---~~~~r~i~~gks~~~~~iG~--~~ 70 (345) T protein:vir:22 1 MASMTGG-----QQMGTNQGKGVVAAGDKLALFLKVFGGEVLTAFARTSVTTS---RHMVRSISSGKSAQFPVLGR--TQ 70 (345) T ss_pred Ccccccc-----hhcccccccccccCCchhHHHHHHHhHHHHHHHHHHhhhcc---cceeeeccccceEEEeeecc--eE Confidence 3333221 23332222222 22333554 334444433211110 01111222222222211111 11 Q ss_pred ccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHh Q lcl|NC_015286. 170 QTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEI 249 (457) Q Consensus 170 ~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEI 249 (457) .. ....++.|.+...+....|.-++||+. |-+..-|.-.-|.++ | .|-..|++.=+..+++.++ T Consensus 71 ~~------~~~~G~~l~~~~~~~~~~e~~ltID~~--------~y~~~~VddiD~~q~-~-~D~r~~~s~~~G~aLA~~~ 134 (345) T protein:vir:22 71 AA------YLAPGENLDDKRKDIKHTEKVITIDGL--------LTADVLIYDIEDAMN-H-YDVRSEYTSQLGESLAMAA 134 (345) T ss_pred EE------eeecCCCCCCCCCCcccceEEEEecch--------hhhhhhHhhHHHHhc-C-chhHHHHHHHHHHHHHHHH Confidence 11 111223343322345678888888874 233444444444444 4 7999999999999999999 Q ss_pred hHHHHhhhhheeeeee-----ccccccceeEeeccccchhHHHHHHHHHHHHHHHHHHHH-HHhcccCCccEEEEchhHH Q lcl|NC_015286. 250 NREVVRTIYTNAVKGA-----QNNTATAGVFDLDVDSNGRWSVEKFKGLLFQIERDANAI-GQQTRRGKGNILICSADVA 323 (457) Q Consensus 250 NReIi~~l~tvA~rgk-----~~~v~~~Gv~Dl~~~~~grw~~e~~k~l~~qi~~ean~i-~~~T~rg~gn~~i~S~~va 323 (457) ++-|++.|..-|..-. ..+..+..+.+.....+.--....-...+|.-..+|++. -.+-.--.|.|+|++|+.- T Consensus 135 D~~i~~~l~k~a~~~~~~~~~~~~~~~~~~~~~~~~g~~~t~~~~~~~~~~~ai~~a~~~Lde~~VP~~~R~~vv~P~~y 214 (345) T protein:vir:22 135 DGAVLAEIAGLCNVESKYNENIEGLGTATVIETTQNKAALTDQVALGKEIIAALTKARAALTKNYVPAADRVFYCDPDSY 214 (345) T ss_pred HHHHHHHHHHhhcccccccccccccccccccccccccccccccccCHHHHHHHHHHHHHHhhhcCCCccCCEEEeChHHH Confidence 9999998876554211 111111111111111100000000001112222333221 2233444689999999999 Q ss_pred HHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEeccccccc-------------------ccceEEEEEe Q lcl|NC_015286. 324 SALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVA-------------------DKHYYVAGYK 384 (457) Q Consensus 324 ~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~-------------------~~dY~~vG~K 384 (457) ++|-...-+. .... .+.++.....+|.++ +++||.-+..|+.. ..-|+.++ T Consensus 215 ~~Ll~~~~~~--~~~~-----~~~~~~~~G~V~~i~-G~~V~~sn~lp~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-- 284 (345) T protein:vir:22 215 SAILAALMPN--AANY-----AALIDPEKGSIRNVM-GFEVVEVPHLTAGGAGTAREGTTGQKHVFPANKGEGNVKVA-- 284 (345) T ss_pred HHHhcccccc--cccc-----ccccccccceEEEEe-ceEEEecccccccccCccccCcccccccccccccceeeeec-- Confidence 9887654331 1111 122234456788884 79999886544211 00111111 Q ss_pred cCCCccceeEEccc----cccccc--cc-cCCccccceeeeeeeeee---eeccccccc---cCc Q lcl|NC_015286. 385 GTSPYDAGLFYCPY----VPLQQV--RA-INPDTFQPKIGFKTRYGM---VSNPFAQGL---TQG 436 (457) Q Consensus 385 G~~~~d~glfyaPY----v~~~~~--~~-~Dp~s~qP~~g~~tRY~l---~~nP~~~~~---~~~ 436 (457) .+. ..++||.|= +.+.++ .. .|+..|-= .+..+|.+ +.+|-+-.. +-+ T Consensus 285 -~~~-~~~l~~h~~A~~~v~~~~~~~e~~r~~~~~~d--~I~~~~a~G~~vlRPeaa~~i~~~~~ 345 (345) T protein:vir:22 285 -KDN-VIGLFMHRSAVGTVKLRDLALERARRANFQAD--QIIAKYAMGHGGLRPEAAGAVVFKVE 345 (345) T ss_pred -cCc-eEEEEEehhheeeeeeecceeeeeechhHHHH--HHHHHHhcCCcccccceeEEEEEeeC Confidence 111 246666664 111111 11 13333322 12222222 333332111 111 No 125 >protein:vir:1328 Length: 392 # NCBI annotation: gp36 # Family: family:all:21 # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047927;swissprot:trembl:q9zwv6;genbank:gi:9631145;uniprot:Q9ZWV6;genbank:GeneID:2715889 Probab=26.07 E-value=2 Score=18.95 Aligned_cols=321 Identities=15% Similarity=0.105 Sum_probs=110.3 Q ss_pred CchHHHHHHhhHhhccccccccccc------hhhhhhhhh---ccchHHHHH---------------------HHHHHhh Q lcl|NC_015286. 1 MSLQQLQEKWAPVLNHESLPEIEDT------HKRGVVAQL---LENQEKAIT---------------------EEASVLN 50 (457) Q Consensus 1 ~~~~~l~~~w~~~l~~~~~~~i~~~------~~~~v~~~~---~~n~~~~~~---------------------~~~~~~~ 50 (457) --.++|++...-+-+++-..|+... ..+.+-.+| +|.+++... +..+++. T Consensus 15 ~~~~e~~~l~~~~~~~~~~~e~~~~~~~l~~e~~~l~~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 94 (392) T protein:vir:13 15 RATAELRSLTDEFAGKEMTAEAREKEERLLTAVADFDGRIKRGIDAIKATDAVTSLLSGLQGSGSGAQRSADHDDDAVLR 94 (392) T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhhhhHHHHHHHh Confidence 0011222222111111111111100 011111111 111111000 0000000 Q ss_pred hhhhccc---------ccccccccccccccccee-hhhhHHHhhh-HhhhhceeeecCCCcceeeeEeeeeecccCCccc Q lcl|NC_015286. 51 ETLQTTG---------YTGASTATGPVAGFDPVL-ISLIRRSMPQ-LIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAA 119 (457) Q Consensus 51 e~~~~~g---------~~~~st~tg~i~~~~P~L-v~l~RRa~~~-LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~ 119 (457) . +..+ .....|++++-...-|.+ -.++.+.... .+...++-+-|+++...+-+- +. .+. T Consensus 95 ~--g~~~~~~~~~~~~~~~~~t~~~~g~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~-----~~~-- 164 (392) T protein:vir:13 95 A--GNLGEARSFEFAPEKRDGTKAGNPNVLSRTLYGQLIAQAVERSAIMRGGASTFTTSDANPMDFT-VI-----TGR-- 164 (392) T ss_pred c--cchhhhHHHHhhhhhhcccccCCCccccccchHHHHHHHHhhhhhhhhcceeeecCCCceeEEE-EE-----cCC-- Confidence 0 0000 000111111111111211 1122222222 234444444444332222111 00 000 Q ss_pred CcccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCccccccee Q lcl|NC_015286. 120 SGYDEAFFNEPNAGFSGGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGF 199 (457) Q Consensus 120 ~~~~EAlfnEa~t~fSG~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsF 199 (457) ...+ ..++.+ .++|-.. T Consensus 165 ------------------------------------------------~~a~------~v~E~~---------~~~~~~~ 181 (392) T protein:vir:13 165 ------------------------------------------------ATAG------IVGETA---------EIPESYP 181 (392) T ss_pred ------------------------------------------------ccee------eecccc---------ccccccc Confidence 0000 001111 2233333 Q ss_pred EEEEEEEEeecccccceeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeeccccccceeEeecc Q lcl|NC_015286. 200 SIEKVTVTARARALKAEYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTATAGVFDLDV 279 (457) Q Consensus 200 sIeK~tVtAKSRaLKAEYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~~Gv~Dl~~ 279 (457) ++++++...+.-+-...+|-||.+|= ..|.++.|.+-|+..|..-+|..||.-= - .+ ...|++.... T Consensus 182 ~f~~v~~~~~k~~~~~~iS~ell~ds----~~~l~~~i~~~l~~~i~~~~d~~~l~G~---G-t~-----~p~Gil~~~~ 248 (392) T protein:vir:13 182 ATTQRSMGGFKYGFASVVSYEFATDQ----VLDLVGFLVSDAGPAIGDAMGRHFLTGT---G-TG-----QPRGILTDAT 248 (392) T ss_pred ceeeEEeeeeeEEeeehhHHHHHhcc----hHHHHHHHHHHHHHHHHHHHHHHHhccc---C-Cc-----cccccccccc Confidence 33444444454555667899999983 3678899999999999999999888520 0 01 1223322211 Q ss_pred ccc--------hhHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCC Q lcl|NC_015286. 280 DSN--------GRWSVEKFKGLLFQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTS 351 (457) Q Consensus 280 ~~~--------grw~~e~~k~l~~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~ 351 (457) ..+ +.-..+....|.+.+... -+..+ ..|+++.....|.. +.- .+|.- ....+.+. T Consensus 249 ~~~~~~~~~~~~~~~~d~l~~~~~~l~~~--------~~~~a-~~v~n~~~~~~l~~---lkd---~~G~~-l~~~~~~~ 312 (392) T protein:vir:13 249 GANAAFGEADADSKVSDALIDLFHEVPSA--------YRKNA-KFVVNDLRAAQMRK---LKD---ANGQY-LWQSALTV 312 (392) T ss_pred cccccccccccccccHHHHHHHHHhhhhh--------hhcCC-EEEEcHHHHHHHHH---hhc---cCCce-eecCCcCC Confidence 000 000011222232332211 23333 35778888777765 211 11110 00111111 Q ss_pred ceEEEEecCceEEEEeccccccc----ccceEEEEEecCCCccceeEEccccccccccccCCcc--ccceeeeeeeeee- Q lcl|NC_015286. 352 STLVGTLNGRIKVYVDPYSANVA----DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDT--FQPKIGFKTRYGM- 424 (457) Q Consensus 352 ~~~~G~l~~~~~vy~D~y~~~~~----~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s--~qP~~g~~tRY~l- 424 (457) ..-++|. +++||++.+.|.+. ++..+++|..+....+. ..|+.. -|=.+-...|.+. T Consensus 313 -g~~~~l~-G~Pv~~~~~~~~~~i~~Gdf~~~~i~~~~~~~i~~--------------~~~~~~~~~~~~~r~~~r~d~~ 376 (392) T protein:vir:13 313 -GAPDTFN-GKVVETDDGMPADKVLFADLSKYRVRFAGSLRVDR--------------SVDAKFSTDQIVYRFLQRADGL 376 (392) T ss_pred -CCCceec-ceeeEEcCCCCCCcEEEeeccceeEEeecceEEEe--------------eccccccCCcEEEEEEEEeccE Confidence 1124564 58999998877321 11111222222111111 112211 1223334455554 Q ss_pred eeccccccc-cCcccc Q lcl|NC_015286. 425 VSNPFAQGL-TQGSGA 439 (457) Q Consensus 425 ~~nP~~~~~-~~~~~~ 439 (457) +.||-+-.. +-..++ T Consensus 377 ~~~~~A~~~~~~~~aa 392 (392) T protein:vir:13 377 LVDARGAKVLTVTPAA 392 (392) T ss_pred EecccceEEEEeeccC Confidence 566653322 222222 No 126 >protein:vir:9361 Length: 402 # NCBI annotation: SLT orf 37-like protein # Family: family:all:658 # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803339;genbank:gi:29028650;genbank:GeneID:1258088 Probab=23.78 E-value=2.3 Score=18.64 Aligned_cols=312 Identities=12% Similarity=0.081 Sum_probs=114.2 Q ss_pred Cc--hHHHHHHhhHh--------------hccccccccccchhhhhhhhhccchHHHHHHH------HHHhhhhhhcccc Q lcl|NC_015286. 1 MS--LQQLQEKWAPV--------------LNHESLPEIEDTHKRGVVAQLLENQEKAITEE------ASVLNETLQTTGY 58 (457) Q Consensus 1 ~~--~~~l~~~w~~~--------------l~~~~~~~i~~~~~~~v~~~~~~n~~~~~~~~------~~~~~e~~~~~g~ 58 (457) +. .+.|.++..-+ ......+.-.+..++ +...+..+.++.. ...+......... T Consensus 57 ~~~~~~~l~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a 132 (402) T protein:vir:93 57 LETEKAGLQQRFNIVERQVQDIEEKEKAKVKDKGEAYQSLSDNE----KMVKAKAEFYRHAILPNEFEKPSMEAQRLLHA 132 (402) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCchhH----HHHHHHHHHHHHHHhhhhHHHHHHhHHHHHhh Confidence 11 12222222211 001111101111111 1111111111110 0000000000000 Q ss_pred ccccccc-cccccccce-e-hhhhHHHhhhHhhhhceeeecCCCcceeeeEeeeeecccCCcccCccccccccccccccc Q lcl|NC_015286. 59 TGASTAT-GPVAGFDPV-L-ISLIRRSMPQLIAYDIAGVQPMTGPTGLIFAMRTNYGAERDPAASGYDEAFFNEPNAGFS 135 (457) Q Consensus 59 ~~~st~t-g~i~~~~P~-L-v~l~RRa~~~LI~~DI~GVQPmTGPTGLIFAMRsrY~~~~g~~~~~~~EAlfnEa~t~fS 135 (457) ..+.+.+ |... =|. + -.+++......+..+++.|-|+++.+.- |-.+. ++. .. T Consensus 133 ~~~~t~~~GG~l--IP~~~~~~Ii~~~~~~~~l~~~~~v~~~~~~~~p----~~~~~---~~~-------------a~-- 188 (402) T protein:vir:93 133 LPTGNDSGGDKL--LPKTLSKEIVSEPFAKNQLREKARLTNIKGLEIP----RVSYT---LDD-------------DD-- 188 (402) T ss_pred hccCCCcCCccc--cchhHHHHHHHhHHhhhhhhhhceeeecCCceee----eeecc---CCc-------------cc-- Confidence 0111111 1110 111 1 0133333344566788888887654321 11110 000 00 Q ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhccCCCCCCcccccceeEEEEEEEEeecccccc Q lcl|NC_015286. 136 GGPGAYDPGASDATNDAEGTNPALLNDSPAGTYEQTADATGMTTATAEALDDSSSNTAFREMGFSIEKVTVTARARALKA 215 (457) Q Consensus 136 G~~~~~~~~~~~~~~~~~gt~~~~~~~~~~gt~~~~~~~~Gm~Ta~aEaLg~~s~~~~f~EMsFsIeK~tVtAKSRaLKA 215 (457) ..++++...+ ....|.+..|.+.|. +-.. T Consensus 189 ------------------------------------------~v~Eg~~~~~--~~~~f~~i~~~~~k~-------~~~i 217 (402) T protein:vir:93 189 ------------------------------------------FITDVETAKE--LKAKGDTVKFTTNKF-------KVFA 217 (402) T ss_pred ------------------------------------------cccccccccc--cccccceeeecceee-------eeec Confidence 0011111111 123455555544444 3456 Q ss_pred eeeHHHHHhHHHhhCCChhHHHHHHHHHHHHHHhhHHHHhhhhheeeeeecccccc-ceeEeeccccchhHHHHHHHHHH Q lcl|NC_015286. 216 EYSIELAQDLKAIHGLDAEQELANILSTEILAEINREVVRTIYTNAVKGAQNNTAT-AGVFDLDVDSNGRWSVEKFKGLL 294 (457) Q Consensus 216 EYT~ELAQDLkAiHGLDAE~ELanILStEImlEINReIi~~l~tvA~rgk~~~v~~-~Gv~Dl~~~~~grw~~e~~k~l~ 294 (457) .+|-||.+|-- +|.+++|.+-|+..|+.-.|..++-.-. ..|+..++.. +++.....+. ..+..+.|+ T Consensus 218 ~iS~ell~Ds~----~~l~~~i~~~la~~~~~~e~~~~~~~g~---g~g~p~g~~~~~~~~~~~~~~----~~d~l~~~~ 286 (402) T protein:vir:93 218 AISDTVIHGSD----VDLVNWVENALQSGLAAKERKDALAVSP---KSGLEHMSFYNGSVKEVEGAD----MYDAIINAL 286 (402) T ss_pred hhhHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHhHhhcCC---Cccccceeeeccccccccccc----hHHHHHHHH Confidence 79999999853 5678899999999888866766653322 2222222211 2221111111 112233444 Q ss_pred HHHHHHHHHHHHhcccCCccEEEEchhHHHHHhhCCcceecccccccccccccccCCceEEEEecCceEEEEeccccccc Q lcl|NC_015286. 295 FQIERDANAIGQQTRRGKGNILICSADVASALGMAGVLDYSPALNGNNALTGVDDTSSTLVGTLNGRIKVYVDPYSANVA 374 (457) Q Consensus 295 ~qi~~ean~i~~~T~rg~gn~~i~S~~va~~L~~sg~l~~~~~~~~~~~~~~~d~~~~~~~G~l~~~~~vy~D~y~~~~~ 374 (457) +.+... -+..+.|++-+...+.++.. ++- .+. ... ...+ ++|. +++||+..+++. T Consensus 287 ~~l~~~--------y~~na~~imn~~t~~~~~~~---~~d----~~~-~~~--~~~~----~~ll-G~PV~~t~~~~~-- 341 (402) T protein:vir:93 287 ADLHED--------YRDNATIYMRYADYVKIISV---LSN----GTT-NFF--DTPA----EKVF-GKPVVFTDAAVK-- 341 (402) T ss_pred hccChh--------hhcCCEEEEechHHHHHHHH---Hhc----CCC-ccc--ccCC----cccc-ccceEEecCCCc-- Confidence 443221 24566776655555554443 211 011 011 1111 3565 469998866542 Q ss_pred ccceEEEEEecCCCccceeEEccccccccccccCCccccceeeeeeeeee-eeccccccc-------cCccc Q lcl|NC_015286. 375 DKHYYVAGYKGTSPYDAGLFYCPYVPLQQVRAINPDTFQPKIGFKTRYGM-VSNPFAQGL-------TQGSG 438 (457) Q Consensus 375 ~~dY~~vG~KG~~~~d~glfyaPYv~~~~~~~~Dp~s~qP~~g~~tRY~l-~~nP~~~~~-------~~~~~ 438 (457) +++|-- +-||.=|-....-+.-|+.+.+-.+-...|++. ++||-+..+ ...|+ T Consensus 342 ----i~~GDf-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~Dg~v~~~~A~~~l~ik~~~~~~~~ 402 (402) T protein:vir:93 342 ----PIVGDF-------NYFGINYDGTTYDTDKDVKKGEYLFVLTAWYDQQRTLDSAFRIAKAKENTGPLPS 402 (402) T ss_pred ----eeeech-------hhhhhhhhhhhhhhhhcccCCceEEEEEEEeCcEEechhheEEEEeecCCCCCCC Confidence 344421 112221111000011244444433334447776 677765421 11122 Done!