Query lcl|NC_014792.1_cdsid_YP_004063858.1 [gene=14] [protein=neck protein] [protein_id=YP_004063858.1] [location=90297..91082] Match_columns 261 No_of_seqs 32 out of 35 Neff 3.8 Searched_HMMs 1612 Date Thu Nov 7 15:36:02 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_177 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_177_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:6890 Length: 254 # 100.0 2E-139 1E-142 781.4 20.3 254 1-260 1-254 (254) 2 protein:vir:107937 Length: 257 100.0 2E-139 1E-142 781.3 19.4 257 1-261 1-257 (257) 3 protein:vir:7199 Length: 256 # 100.0 6E-138 4E-141 772.9 18.6 256 1-260 1-256 (256) 4 protein:vir:103452 Length: 256 100.0 2E-137 1E-140 770.4 18.6 256 1-260 1-256 (256) 5 protein:vir:80995 Length: 246 100.0 4E-133 2E-136 746.6 18.8 246 3-257 1-246 (246) 6 protein:vir:6590 Length: 246 # 100.0 8E-133 5E-136 744.9 18.5 246 3-257 1-246 (246) 7 protein:vir:98258 Length: 248 100.0 8E-133 5E-136 744.9 18.4 248 1-253 1-248 (248) 8 protein:vir:101800 Length: 252 100.0 5E-131 3E-134 735.1 18.8 252 3-259 1-252 (252) 9 protein:vir:101154 Length: 252 100.0 5E-131 3E-134 735.1 18.8 252 3-259 1-252 (252) 10 protein:vir:106285 Length: 262 100.0 1E-130 9E-134 732.4 17.3 255 1-258 1-262 (262) 11 protein:vir:100535 Length: 253 100.0 5E-129 3E-132 724.0 17.7 253 3-260 1-253 (253) 12 protein:vir:5658 Length: 278 # 100.0 5E-126 3E-129 707.5 16.8 257 1-258 1-278 (278) 13 protein:vir:104476 Length: 308 100.0 2E-111 2E-114 627.0 12.8 252 2-261 1-273 (308) 14 protein:vir:106986 Length: 292 100.0 1E-105 8E-109 595.5 13.4 236 25-261 1-252 (292) 15 protein:vir:103005 Length: 390 100.0 1.4E-93 8.8E-97 529.6 12.8 251 10-261 1-271 (390) 16 protein:vir:104739 Length: 470 100.0 4.7E-83 2.9E-86 471.9 13.4 225 25-261 1-254 (470) 17 protein:vir:1385 Length: 107 # 35.8 1.2 0.00075 20.1 8.4 106 53-175 1-107 (107) 18 protein:vir:97237 Length: 122 24.9 2.1 0.0013 18.8 10.0 121 27-173 1-122 (122) No 1 >protein:vir:6890 Length: 254 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861866;genbank:gi:32453657;genbank:GeneID:1494292 Probab=100.00 E-value=1.6e-139 Score=781.44 Aligned_cols=254 Identities=65% Similarity=1.148 Sum_probs=251.7 Q ss_pred CcccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccc Q lcl|NC_014792. 1 MATYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKF 80 (261) Q Consensus 1 m~~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF 80 (261) |+|||+|||||||+++||++|++++|||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (254) T protein:vir:68 1 MATYDKNLFAKLENRGGYSQTNETEILNPFVNFNNYENSQTLADVLVAESIQMRGIECFYVPREYVAVDLIFGEDLKNKF 80 (254) T ss_pred CcccccceeeeecCCcchhhhhhccccceeEEeeccCchhHHHHHHHHHHHHHcCceEEEechhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhh Q lcl|NC_014792. 81 DKAWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQ 160 (261) Q Consensus 81 ~~a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ 160 (261) ++||+||||++||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (254) T protein:vir:68 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPGLFKHQVNNQEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (254) T ss_pred ccceeEEEeeehhhccCCcccchhhcCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCceEEEeccCCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hCCceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCC Q lcl|NC_014792. 161 VGQNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNG 240 (261) Q Consensus 161 ~Gk~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~ 240 (261) +||+|||+|+|+||+||||+|+|++++||+|+++++.+|||+||++|||++||++++++|.+++++||++||+||.|||| T Consensus 161 ~GKn~~~~l~ce~F~Ys~E~idt~i~~id~I~~~e~~~ldl~~i~~ldG~~di~~~~~~E~~~~~~e~~~f~e~~~~vn~ 240 (254) T protein:vir:68 161 VGKNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSDLELNPVRNLDGIHDINIDEYSEVEQINSEASEYVEPYVVVNN 240 (254) T ss_pred hCCceEEEEEEEEEeeCCccccCCCcccCCccCcccCCcchhhHhhhcchhhccccchhhHHHHHhhhhhhcccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCCCCCccccc Q lcl|NC_014792. 241 RGLESPPKAKQDSFDDSFFD 260 (261) Q Consensus 241 ~g~~~~~~~~~~~f~~~~~~ 260 (261) +|++ ++||||+||+ T Consensus 241 ~g~~------~~pf~~~~~~ 254 (254) T protein:vir:68 241 RGRQ------NSPFDDGFMN 254 (254) T ss_pred CCCC------CCcccccccC Confidence 9943 6789999999 No 2 >protein:vir:107937 Length: 257 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595290;genbank:gi:161622596;genbank:GeneID:5783656 Probab=100.00 E-value=1.8e-139 Score=781.29 Aligned_cols=257 Identities=75% Similarity=1.302 Sum_probs=254.5 Q ss_pred CcccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccc Q lcl|NC_014792. 1 MATYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKF 80 (261) Q Consensus 1 m~~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF 80 (261) |+|||+|||||||+|+||++|++++|||||||++||.+||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~t~~~~~lnPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (257) T protein:vir:10 1 MATFDSSLFAKLENNTGYANTNETEIMNPFVNFYRHENTQTLADALVAESIQMRGIELYYIPREYVNPDQLFGEDLQNKF 80 (257) T ss_pred CcccccceeeeecCCcchhhhhhhccccceeecccCCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhh Q lcl|NC_014792. 81 DKAWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQ 160 (261) Q Consensus 81 ~~a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ 160 (261) ++||+||||++||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+|||+++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (257) T protein:vir:10 81 TKAWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQ 160 (257) T ss_pred ccceeEEEeeehhhccCCCcceeeecCceecceEEEEEccchhhhhccCCCCccccEEEEcCCCceEEEecccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hCCceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCC Q lcl|NC_014792. 161 VGQNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNG 240 (261) Q Consensus 161 ~Gk~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~ 240 (261) +||+|||+|+|+||+||||+|.|++++++++.++++.++||++|+|||||+||++++++|++++++||++||+|++|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~l~pel~~n~~~~V~e~~eldl~~~~~ldG~~di~~~~~~E~~~~~~e~~~fi~p~~~~n~ 240 (257) T protein:vir:10 161 VGTNVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVING 240 (257) T ss_pred hCCceEEEEEEEEeeeCCcccccccCCcccCCCCCccchhhhhhhhccchhhcCCchhhhHHHHHHhhhhhhccccccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCCCCCcccccC Q lcl|NC_014792. 241 RGLESPPKAKQDSFDDSFFDE 261 (261) Q Consensus 241 ~g~~~~~~~~~~~f~~~~~~~ 261 (261) +|+..+| +||||+||++ T Consensus 241 ~g~~~~~----~pf~~~~~~~ 257 (257) T protein:vir:10 241 RGEDAPP----TAFDDAFLDD 257 (257) T ss_pred CCCCCCC----CcccchhccC Confidence 9976665 5999999999 No 3 >protein:vir:7199 Length: 256 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049773;genbank:gi:9632588;genbank:GeneID:1258695 Probab=100.00 E-value=6.1e-138 Score=772.86 Aligned_cols=256 Identities=67% Similarity=1.161 Sum_probs=252.9 Q ss_pred CcccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccc Q lcl|NC_014792. 1 MATYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKF 80 (261) Q Consensus 1 m~~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF 80 (261) |+|||+|||||||+++||++|++++|||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:71 1 MATYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhh Q lcl|NC_014792. 81 DKAWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQ 160 (261) Q Consensus 81 ~~a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ 160 (261) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:71 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCcEEEEEcccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hCCceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCC Q lcl|NC_014792. 161 VGQNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNG 240 (261) Q Consensus 161 ~Gk~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~ 240 (261) +||+|||+|+|+||+||||+|+|+++++|+|+++++++|||++|+++||++||++++++|++++++||++||+|+.|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~e~~eldl~~i~~ldg~~di~~~~~~e~~~i~~e~~~~ve~~~~in~ 240 (256) T protein:vir:71 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNAVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEecCCceecccCCCCCcccCCcccccccccccccCcccccccccccchhhhhhccccccccceeecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCCCCCccccc Q lcl|NC_014792. 241 RGLESPPKAKQDSFDDSFFD 260 (261) Q Consensus 241 ~g~~~~~~~~~~~f~~~~~~ 260 (261) +|++ ..++||||+||| T Consensus 241 ~G~~----~~~~pfd~~~~~ 256 (256) T protein:vir:71 241 RGKS----FESSPFDNDFMD 256 (256) T ss_pred CCCC----CcCCCccccccC Confidence 9955 346699999999 No 4 >protein:vir:103452 Length: 256 # NCBI annotation: head completion # Family: family:all:1104 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803104;genbank:gi:116326384;genbank:GeneID:4405481 Probab=100.00 E-value=1.7e-137 Score=770.43 Aligned_cols=256 Identities=68% Similarity=1.170 Sum_probs=252.9 Q ss_pred CcccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccc Q lcl|NC_014792. 1 MATYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKF 80 (261) Q Consensus 1 m~~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF 80 (261) |+|||+|||||||+++||++|++++|||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (256) T protein:vir:10 1 MATYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKF 80 (256) T ss_pred CcccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhh Q lcl|NC_014792. 81 DKAWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQ 160 (261) Q Consensus 81 ~~a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ 160 (261) ++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ 160 (256) T protein:vir:10 81 TKAWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQ 160 (256) T ss_pred ccceeEEEEeehhhccCCccccceecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEEeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hCCceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCC Q lcl|NC_014792. 161 VGQNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNG 240 (261) Q Consensus 161 ~Gk~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~ 240 (261) +||+|||+|+|+||+||||+|+|+++++|+|+++++++||++||++|||++||++++++|.+++++||+.||+|+.|||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~eldl~pi~~ldG~~di~~~~~~e~~~~~~e~~~~v~~~~~in~ 240 (256) T protein:vir:10 161 LGQNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNN 240 (256) T ss_pred hCCCeEEEEEEEEEeeCCceecccCCCCccccCCccchhhhccccccccccccCccccccchhhhhccccccccceEecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCCCCCccccc Q lcl|NC_014792. 241 RGLESPPKAKQDSFDDSFFD 260 (261) Q Consensus 241 ~g~~~~~~~~~~~f~~~~~~ 260 (261) +|++ ..++||||+||| T Consensus 241 ~G~~----~~~~pfd~~~~~ 256 (256) T protein:vir:10 241 RGKS----FESSPFDNDFMD 256 (256) T ss_pred CCCC----CcCCCccccccC Confidence 9955 346699999999 No 5 >protein:vir:80995 Length: 246 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469495;genbank:gi:157311452;genbank:GeneID:5602161 Probab=100.00 E-value=3.8e-133 Score=746.56 Aligned_cols=246 Identities=61% Similarity=1.099 Sum_probs=243.2 Q ss_pred ccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccccc Q lcl|NC_014792. 3 TYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKFDK 82 (261) Q Consensus 3 ~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF~~ 82 (261) -||+|||||||+||||++||+++|||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:80 1 MFDSTLFARLESQKDYENTRQTEILNPYVNFNSHTNTQTLADIMVAESIQMRGVEMYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeeeCCCCchhhHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014792. 83 AWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQVG 162 (261) Q Consensus 83 a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~G 162 (261) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:80 81 AWKFAAYINSFDGYEGAGNFFQSFGYTANDELTITINPNLFKHQVDNKEPKSGDLFYIPMSNDLFEISYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchHhhhhCCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCCCC Q lcl|NC_014792. 163 QNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNGRG 242 (261) Q Consensus 163 k~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~~g 242 (261) |+|||+|+|+||+||||+|+|+++++|+|+++++++|||+||+||||++||++++|+|.+++++||++||+||+||||+| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~t~i~~~d~I~~de~~~ldl~~i~nldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:80 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCcccchhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCCCcc Q lcl|NC_014792. 243 LESPPKAKQDSFDDS 257 (261) Q Consensus 243 ~~~~~~~~~~~f~~~ 257 (261) +||+|- T Consensus 241 ---------spf~~~ 246 (246) T protein:vir:80 241 ---------SPFADF 246 (246) T ss_pred ---------CccccC Confidence 477765 No 6 >protein:vir:6590 Length: 246 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891721;genbank:gi:33620667;genbank:GeneID:1725307 Probab=100.00 E-value=7.7e-133 Score=744.88 Aligned_cols=246 Identities=60% Similarity=1.082 Sum_probs=243.2 Q ss_pred ccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccccc Q lcl|NC_014792. 3 TYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKFDK 82 (261) Q Consensus 3 ~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF~~ 82 (261) -||+|||||||+||||++||+++|||||||+|||.+||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:65 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFHKYTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeecCCCcchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014792. 83 AWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQVG 162 (261) Q Consensus 83 a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~G 162 (261) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:65 81 AWKFAAYINSFDGYEGAGNFFSSFGYQANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCcEEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCCCC Q lcl|NC_014792. 163 QNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNGRG 242 (261) Q Consensus 163 k~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~~g 242 (261) |+|||+|+|+||+||||+|+|+++++|+|+++++++|||+||+||||++||++++|+|.+++++||++||+||+||||+| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~~~i~~~d~I~~de~~~ldl~~i~~ldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:65 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCccchhhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCCCcc Q lcl|NC_014792. 243 LESPPKAKQDSFDDS 257 (261) Q Consensus 243 ~~~~~~~~~~~f~~~ 257 (261) +||+|- T Consensus 241 ---------spf~~~ 246 (246) T protein:vir:65 241 ---------SPFADF 246 (246) T ss_pred ---------CccccC Confidence 477765 No 7 >protein:vir:98258 Length: 248 # NCBI annotation: gp14 head completion # Family: family:all:1104 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239191;genbank:gi:66391666;genbank:GeneID:3416360 Probab=100.00 E-value=7.6e-133 Score=744.90 Aligned_cols=248 Identities=50% Similarity=0.907 Sum_probs=244.0 Q ss_pred CcccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccc Q lcl|NC_014792. 1 MATYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKF 80 (261) Q Consensus 1 m~~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF 80 (261) |+|||+|||||||+|+||++|+++++||||||+|+|++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~l~~~~gy~~t~~~~~lnPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF 80 (248) T protein:vir:98 1 MQNWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKF 80 (248) T ss_pred CcccccceeeEecCCcchhhhhhcccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhh Q lcl|NC_014792. 81 DKAWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQ 160 (261) Q Consensus 81 ~~a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ 160 (261) ++||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||| +|||| T Consensus 81 ~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~-dPFYQ 159 (248) T protein:vir:98 81 TKSWKIAAYIESYANYEGQRDFFSKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQ 159 (248) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCceEEEEecCC-Cchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 59999 Q ss_pred hCCceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCC Q lcl|NC_014792. 161 VGQNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNG 240 (261) Q Consensus 161 ~Gk~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~ 240 (261) +||+|||+|+|+||+||||+|+|+++++|+|+++.++++||+||++|||++||++++++|.+++++||++||+|++|||| T Consensus 160 ~Gkn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~~iDl~~i~~ldg~~Di~~~~~~e~~~~~~E~~~~~~~~~vin~ 239 (248) T protein:vir:98 160 FGDRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNG 239 (248) T ss_pred hCCCeEEEEEEEEeeeCCccccccCCCccccCCCCCcchhHHHhhcCccccccCcccccchhhhhhhhhhhhcccceecC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCCC Q lcl|NC_014792. 241 RGLESPPKAKQDS 253 (261) Q Consensus 241 ~g~~~~~~~~~~~ 253 (261) +|+|.+.. | T Consensus 240 ~g~~~~~~----~ 248 (248) T protein:vir:98 240 RGSPFATL----P 248 (248) T ss_pred cCCCccCC----C Confidence 99877533 2 No 8 >protein:vir:101800 Length: 252 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238877;genbank:gi:66391952;genbank:GeneID:3416627 Probab=100.00 E-value=4.7e-131 Score=735.07 Aligned_cols=252 Identities=51% Similarity=0.890 Sum_probs=242.5 Q ss_pred ccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccccc Q lcl|NC_014792. 3 TYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKFDK 82 (261) Q Consensus 3 ~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF~~ 82 (261) -+|+|||||||+++||++|++++|||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014792. 83 AWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQVG 162 (261) Q Consensus 83 a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~G 162 (261) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+|||+++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCCCC Q lcl|NC_014792. 163 QNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNGRG 242 (261) Q Consensus 163 k~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~~g 242 (261) |+|||+|+|+||+||||+|+|+++++|+|+ +++++|||++|++||||+||+++||+|.+++++||++||+||+||||+| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCCCcccc Q lcl|NC_014792. 243 LESPPKAKQDSFDDSFF 259 (261) Q Consensus 243 ~~~~~~~~~~~f~~~~~ 259 (261) .+++++ ||..-=- T Consensus 240 ~~~~~~----pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDS----PFGKHEA 252 (252) T ss_pred CCCcCC----cccccCC Confidence 665433 3321100 No 9 >protein:vir:101154 Length: 252 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932505;genbank:gi:37651631;genbank:GeneID:2610647 Probab=100.00 E-value=4.7e-131 Score=735.07 Aligned_cols=252 Identities=51% Similarity=0.890 Sum_probs=242.5 Q ss_pred ccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccccc Q lcl|NC_014792. 3 TYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKFDK 82 (261) Q Consensus 3 ~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF~~ 82 (261) -+|+|||||||+++||++|++++|||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014792. 83 AWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQVG 162 (261) Q Consensus 83 a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~G 162 (261) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+|||+++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCCCC Q lcl|NC_014792. 163 QNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNGRG 242 (261) Q Consensus 163 k~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~~g 242 (261) |+|||+|+|+||+||||+|+|+++++|+|+ +++++|||++|++||||+||+++||+|.+++++||++||+||+||||+| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCCCcccc Q lcl|NC_014792. 243 LESPPKAKQDSFDDSFF 259 (261) Q Consensus 243 ~~~~~~~~~~~f~~~~~ 259 (261) .+++++ ||..-=- T Consensus 240 ~~~~~~----pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDS----PFGKHEA 252 (252) T ss_pred CCCcCC----cccccCC Confidence 665433 3321100 No 10 >protein:vir:106285 Length: 262 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944101;genbank:gi:38640145;genbank:GeneID:2658033 Probab=100.00 E-value=1.5e-130 Score=732.37 Aligned_cols=255 Identities=49% Similarity=0.798 Sum_probs=244.6 Q ss_pred CcccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccc Q lcl|NC_014792. 1 MATYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKF 80 (261) Q Consensus 1 m~~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF 80 (261) |+|||+|||||||+|+||++|++++|||||||+++|++||+|+++||+|||||||+|||||||++|++|+||||+++||| T Consensus 1 m~~~d~~lfa~le~~~gy~~~~~~~vlNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~gEd~~SkF 80 (262) T protein:vir:10 1 MFARNQSMFAQLETGAGYNKTYQTNVLNPYVNKHEYEPTLSLHEMLVAESIQMTGVEMYYIRREFVNFDRIFGEDMQSKF 80 (262) T ss_pred CcccccceeeEecCCCcccCcchhccccceeccCCcCchhhHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhh Q lcl|NC_014792. 81 DKAWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQ 160 (261) Q Consensus 81 ~~a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ 160 (261) ++||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+++|||| T Consensus 81 ~ka~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPl~nsLFEI~~VE~~~PFYQ 160 (262) T protein:vir:10 81 KKTYKVAMYLESFDEYSGQRDFFSKFGMQVNDEITMSVSPKLFETQADGDRVKEGDLIYFPLNNSLFEVTWVEPSSPVVK 160 (262) T ss_pred ccceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCceEEEeeccCCCchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hCCceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCC Q lcl|NC_014792. 161 VGQNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNG 240 (261) Q Consensus 161 ~Gk~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~ 240 (261) +||+|||+|+|+||+||||+|+|++++||+|..... +|++|++|||++||+++|++|.+++++||++||+|+++||| T Consensus 161 ~Gkn~~~~l~ce~F~Ys~E~i~~~i~~id~i~~e~~---~l~~i~~lDg~~di~~~q~~e~~~~~~e~~~fv~~~d~v~~ 237 (262) T protein:vir:10 161 REQLAKYKVTAQKFIYSGEEIKPEFDPNRYVLGEDD---PLSQIKALDGRADISLDEFAEDDAFNEEAEDFVVEFDNIIG 237 (262) T ss_pred hCCceEEEEEEEEEeeCCccccccCccccccccccc---cccccccccceeecccccccchhHHhhhhhhhcchhcccCC Confidence 999999999999999999999999999999974332 59999999999999999999999999999999999999999 Q ss_pred CCCCC----CCCCC-CCCCCc--cc Q lcl|NC_014792. 241 RGLES----PPKAK-QDSFDD--SF 258 (261) Q Consensus 241 ~g~~~----~~~~~-~~~f~~--~~ 258 (261) +|||. ||.++ .+|||| +| T Consensus 238 ~gsp~~~~~~~~~~~~~~fdd~~~~ 262 (262) T protein:vir:10 238 NGTPIAEHKPTKPAPVSAFDDLESF 262 (262) T ss_pred CCCcccccCCCCCCCCChhhhhhcC Confidence 99995 43333 358887 34 No 11 >protein:vir:100535 Length: 253 # NCBI annotation: gp14 head completion protein # Family: family:all:1104 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656376;genbank:gi:109290127;genbank:GeneID:4156513 Probab=100.00 E-value=5e-129 Score=723.99 Aligned_cols=253 Identities=50% Similarity=0.882 Sum_probs=244.1 Q ss_pred ccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheeccccccccccccccccc Q lcl|NC_014792. 3 TYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKFDK 82 (261) Q Consensus 3 ~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF~~ 82 (261) -+|+|||||||+++||++|++++|||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (253) T protein:vir:10 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) T ss_pred CcCccceeEecCCcchhhhhhhccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhccccCcccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014792. 83 AWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQVG 162 (261) Q Consensus 83 a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~G 162 (261) ||+|||||+||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+++||||+| T Consensus 81 a~~ieaYl~~~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (253) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecCCCC Q lcl|NC_014792. 163 QNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQNGRG 242 (261) Q Consensus 163 k~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n~~g 242 (261) |+|||+|+|+||+||||+|+|++++||+|+ ++++.||+++|++|||++||++.+++|.+++++||++||+||.|++|+| T Consensus 161 kn~~~~l~ce~F~Ys~E~i~tgi~~id~Ie-~~~~~ldl~~i~~l~G~~Di~~~~~~e~~~~~~e~~~~v~~~~~~~~~~ 239 (253) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) T ss_pred CceEEEEEEEEEecCCccccccCccccccc-chhhhhhhhhhhcCCCccccccccccccchhhhccccccccceeccCCC Confidence 999999999999999999999999999999 7889999999999999999999999999999999999999999999877 Q ss_pred CCCCCCCCCCCCCccccc Q lcl|NC_014792. 243 LESPPKAKQDSFDDSFFD 260 (261) Q Consensus 243 ~~~~~~~~~~~f~~~~~~ 260 (261) ++++++||-..==. T Consensus 240 ----~~g~~spf~~~~~~ 253 (253) T protein:vir:10 240 ----VNSFNSPFGRHEGQ 253 (253) T ss_pred ----CccccCcccccCCC Confidence 56777777532111 No 12 >protein:vir:5658 Length: 278 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899597;genbank:gi:34419584;genbank:GeneID:2545699 Probab=100.00 E-value=5.1e-126 Score=707.48 Aligned_cols=257 Identities=42% Similarity=0.753 Sum_probs=242.7 Q ss_pred Cccccc---ceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheecccccccccccc Q lcl|NC_014792. 1 MATYDA---NLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQ 77 (261) Q Consensus 1 m~~~~~---~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~ 77 (261) |+|||+ |||||||+|+||++|+.++|||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++ T Consensus 1 m~~~d~~~~~lfa~l~~~~gy~~~~~~~~~NpYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~ 80 (278) T protein:vir:56 1 MGAYDTNTGGMFAKLESQKGYDQIYNNHLVNPYFNWVNHTNEQNLTDMLVAESIINRGVECVYLRREMEKVDLVFGEDPM 80 (278) T ss_pred CccccccCceEEEEecCCcccchhcccccccceeeccCCCchhHHHHHHHHHHHHHcCceEEEcchhhhccccccccccc Confidence 999999 69999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCCh Q lcl|NC_014792. 78 SKFDKAWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDP 157 (261) Q Consensus 78 skF~~a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~P 157 (261) |||++||+|||||+||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++| T Consensus 81 skF~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~P 160 (278) T protein:vir:56 81 SKFTQNFRMSLYVESFEGWDGDGDWYSKFGFQVNDEMNVCINPKLFAQQGDGKQPLMGDLIYFPLANSLFEISWIEREDP 160 (278) T ss_pred cccccceeEEEEeehhhccCCCceeeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCcEEEEEccCCCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhCCceEEEEEEEEEecCCCccCcc---ccccccccCCCccc-----ccHHHHHHhhhhhhcCcccccchhhhhhhhh Q lcl|NC_014792. 158 FYQVGQNAIRKITASKYIYSGEELKPE---LQRNEGINIPEFSE-----LDLQPIHNIDGLTDISDIPYAESDEINAEAA 229 (261) Q Consensus 158 FyQ~Gk~~v~~l~c~~F~YS~E~i~t~---~~~~d~i~~~~~~~-----ldld~i~~lDg~~di~~~~~~E~~~~~~e~~ 229 (261) |||+||+|||+|+|+||+||||+|++| +++.+.+.++++.+ ||+++|++|||++||++++++|.+++++||+ T Consensus 161 FYQ~Gk~~~~~l~ce~F~Ys~E~~dtg~pe~~~d~i~~i~ef~e~~~~~ld~~~~~~l~G~~di~~~~~~e~~~~~~e~~ 240 (278) T protein:vir:56 161 WYMNGVLPMRKMKMTKFVYSGEEINLEKPEAVIDSIDDILNFGEDTDEMIDIDKINALDGRWDIGIEQGAEITQIEDEVD 240 (278) T ss_pred hhhhCCceEEEEEEEEeeecCceecccCCccccccccchhhcccchhhcccccccccccchhcccchhhhhhhhhhhccc Confidence 999999999999999999999999866 44555556678888 9999999999999999999999999999999 Q ss_pred hhhhhheecCCCCCCCC--CCCCCC--------CCCccc Q lcl|NC_014792. 230 EYVKPYFVQNGRGLESP--PKAKQD--------SFDDSF 258 (261) Q Consensus 230 ~~v~~~~~~n~~g~~~~--~~~~~~--------~f~~~~ 258 (261) .|++|+.|+|++|++.| |+++++ |||+ | T Consensus 241 ~f~~~~~v~~~~~~~~~t~~~n~~~g~~v~~~~~~D~-f 278 (278) T protein:vir:56 241 KFYESEQVVPSGSDVQPTDPRNATIGFNVNNSNPFDS-F 278 (278) T ss_pred eeeecCceecCCCCccccCcccccCCCcCcccccccc-C Confidence 99999999999887776 333333 4544 3 No 13 >protein:vir:104476 Length: 308 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214650;genbank:gi:61806291;genbank:GeneID:3294531 Probab=100.00 E-value=2.4e-111 Score=627.01 Aligned_cols=252 Identities=24% Similarity=0.467 Sum_probs=219.3 Q ss_pred cccccceeeeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheecccccccccccccccc Q lcl|NC_014792. 2 ATYDANLFARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKFD 81 (261) Q Consensus 2 ~~~~~~lfa~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF~ 81 (261) -+|..+. -+.|=++ ...+|||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||+ T Consensus 1 ~~~~~~~------~~py~~~--~~~~~~~~n~~~~~~eQ~L~e~LV~EsIqm~G~dvyYlpRe~v~~D~i~~Ed~~skF~ 72 (308) T protein:vir:10 1 MAIQNSP------AQDYVQS--DYSNAGRLKANASSQEQKFIENLVVESIEIYGQDIYYVPRTIVNRDSVFEEDSDGKFE 72 (308) T ss_pred CccccCC------CCCcccc--cccccceEEEeccCchhHHHHHHHHHHHHhcCceEEEechhhcccccccccccccccc Confidence 1222221 0112110 0123666799999999999999999999999999999999999999999999999999 Q ss_pred cceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccC-------CCccccEEEEcCCCcEEEEeeecc Q lcl|NC_014792. 82 KAWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGT-------EPIAGDLIYFPLDNSLFEITWVQP 154 (261) Q Consensus 82 ~a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~-------~P~EGDLIYfPm~n~LFEI~~Ve~ 154 (261) +||+|||||+|||||+|+++||||||||++|||||+|||+||++++++. ||+|||||||||+|+||||||||| T Consensus 73 ~a~~ieaY~~~~egy~g~~~~~SKFG~~~~DE~t~~is~~rF~~~v~~~~~~~~~~rP~EGDLIYfPl~~~lFEI~~VE~ 152 (308) T protein:vir:10 73 SAKAIRAYVNNVEGWEGQGELLSKFGIRIEDKTTFIFSREKFKEHVDDSVTLNVEGRPNEGDLIWFPITKHLFEIKFVEV 152 (308) T ss_pred cceeEEEEeechhccCCCcceeeecCceecceEEEEEccchhhhhcCCccccccCCCCccccEEEecCCCceEEEEcccC Confidence 9999999999999999999999999999999999999999999999984 999999999999999999999999 Q ss_pred CChhhhhCCceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhh--- Q lcl|NC_014792. 155 YDPFYQVGQNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEY--- 231 (261) Q Consensus 155 ~~PFyQ~Gk~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~--- 231 (261) ++||||+||+|||+|+|+||+||||+|+|+++++|+|++++++.|+|++|++++|.+++++.++++++++++||+.| T Consensus 153 ~~PFyQ~Gk~~~~~l~ce~F~Ys~E~~~~~i~~iD~i~~~~~~~LdL~pIs~l~G~fdInE~v~gest~itAEv~~wds~ 232 (308) T protein:vir:10 153 ERPFYQLGRNYVWECQCELFEYSDEEINTGITELDAIETAFANAITVGLVAGGTGTFTVGETITGGTSNVTAEVKSFDAS 232 (308) T ss_pred CCchhhhCCceEEEEEEEEEeeCCcccccCCccccccccccccceeeeeeccCCccccccceecccccceEEEEEEecCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999866 Q ss_pred hhhheecCCCCCCCCCC---CCCC-------CCCc-ccccC Q lcl|NC_014792. 232 VKPYFVQNGRGLESPPK---AKQD-------SFDD-SFFDE 261 (261) Q Consensus 232 v~~~~~~n~~g~~~~~~---~~~~-------~f~~-~~~~~ 261 (261) ++|..|+|++|+...|. +.++ .++. +..+. T Consensus 233 v~~ItV~N~gGsftspptItGsts~a~~t~~s~~~~~nt~~ 273 (308) T protein:vir:10 233 TRTLIVINRSGTFTVPETVTGGTSSASWTTATYNTIDNQNL 273 (308) T ss_pred ceEEEEEeCCCceeeCcEEEeccCCceeEEEeeeecccCCC Confidence 89999999887665433 1111 1221 11111 No 14 >protein:vir:106986 Length: 292 # NCBI annotation: neck protein gp14 # Family: family:all:1104 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195128;genbank:gi:58532905;uniprot:Q5GQV9;genbank:GeneID:3260483 Probab=100.00 E-value=1.3e-105 Score=595.53 Aligned_cols=236 Identities=23% Similarity=0.442 Sum_probs=216.2 Q ss_pred ccccceee--ecccchhHHHHHHHHHHHHHhcCcceEeeeheecccccccccccccccccceeeeeccchhhccCccchh Q lcl|NC_014792. 25 EILNPYVN--FMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKFDKAWKFAGYLDTFDAYQGDGSI 102 (261) Q Consensus 25 ~~~npyfN--~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF~~a~~ieaY~~n~egf~g~gd~ 102 (261) --|||||| +|||.+||+|+|+||+|||||||+|||||||++|+ |+||+|+++|||++||+|||||+||+||+|+++| T Consensus 1 m~~npyfn~~~~~~~~eQ~L~~~LV~Esiq~~G~dvyYlpRe~~~-d~~~~E~~~skF~~a~~ieaY~~~~eg~~g~~~~ 79 (292) T protein:vir:10 1 MPTSPYFPSYYSGYSGEQNLVQDLVDEQIKLFGTDIYYLPRTILR-DNTLDDVIYNKFERQFQVEMLLQNVEGFGSPSEF 79 (292) T ss_pred CCcCccccccccCcCchhHHHHHHHHHHHHhcCceEEEechhhhc-ccccccccccccccceeEEEEeechhccCCCcce Confidence 56999999 68999999999999999999999999999999999 9999999999999999999999999999999999 Q ss_pred hhhcCceeeeeEEEEEcchhhhhhhcc------CCCccccEEEEcCCCcEEEEeeeccCChhhhhCCceEEEEEEEEEec Q lcl|NC_014792. 103 FSKFGMTVNDEITVSINPNLFKHQCNG------TEPIAGDLIYFPLDNSLFEITWVQPYDPFYQVGQNAIRKITASKYIY 176 (261) Q Consensus 103 ~SKFG~~~~DEit~~IS~~~F~~~~~~------~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~Gk~~v~~l~c~~F~Y 176 (261) |||||||++|||||+|||+||++++++ +||+|||||||||+|+||||+||||++||||+||+|||+|+|+||+| T Consensus 80 ~sKFG~~~~De~t~~is~~~f~~~~~~~~~~~~~~P~eGDLIYfPl~~~lFEI~~ve~~~PfyQ~gk~~~~~l~~~~F~Y 159 (292) T protein:vir:10 80 ISKFGLRITDEVRFIVSQRRWDEEAVNYDLNVNGRPNEGDLLYFPLTQDIYEIKFVEREDPFYQLGKNYFYIMTAEIYEY 159 (292) T ss_pred eeecCceecceEEEEEccchhhhhcCcccccccCCCccccEEEEcCCCcEEEEEcccCCCchhhhCCceEEEEEEEEEee Confidence 999999999999999999999999998 89999999999999999999999999999999999999999999999 Q ss_pred CCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhh---hhhheecCCCCCCCCC---CCC Q lcl|NC_014792. 177 SGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEY---VKPYFVQNGRGLESPP---KAK 250 (261) Q Consensus 177 S~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~---v~~~~~~n~~g~~~~~---~~~ 250 (261) |+|+|+|+++++|+|+++.+..|+++++++++|..+++..++++...+.+||..+ +.|..|+|++|+...+ ++. T Consensus 160 s~E~idtgl~eiD~i~~~~sseLdL~pi~~g~G~f~inE~vtge~sg~~AEv~sw~~~t~~L~V~n~~GsF~T~e~i~G~ 239 (292) T protein:vir:10 160 GSDNISTGVEEIDELETLFSSAIAIALSIGGTGDFDLGEIVTGGISGTEAEVKSWDSSSRILQVINRTGTFEEGESVTGN 239 (292) T ss_pred cCceecCCCCcccccccccccccceeecccCCccccCCceeeecccceEEEEEEccCCCceEEEEeCccccccCceeeEe Confidence 9999999999999999999999999999999999999999999999999999877 6688899998766422 221 Q ss_pred CC--CCCcccccC Q lcl|NC_014792. 251 QD--SFDDSFFDE 261 (261) Q Consensus 251 ~~--~f~~~~~~~ 261 (261) .+ ...-+.... T Consensus 240 ~Sga~~~v~si~~ 252 (292) T protein:vir:10 240 DSGSVWVVDSFDT 252 (292) T ss_pred ecCCeEEeeEEEE Confidence 11 011111111 No 15 >protein:vir:103005 Length: 390 # NCBI annotation: gp110 # Family: family:all:1104 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717777;genbank:gi:113200614;genbank:GeneID:4239009 Probab=100.00 E-value=1.4e-93 Score=529.62 Aligned_cols=251 Identities=22% Similarity=0.406 Sum_probs=195.7 Q ss_pred eeecCCcchhhhhccccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheecccccccccccccccccceeeeec Q lcl|NC_014792. 10 ARLEDGTGYDNTNATEILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKFDKAWKFAGY 89 (261) Q Consensus 10 a~le~~~~y~~~~~~~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF~~a~~ieaY 89 (261) -...+.+||++++..+++|||||+|||.+||+|+|+||+|||||||+||||||||+|++|+||+|+++|||++||+|||| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~~~lv~e~i~~~g~~~~y~~r~~~~~d~~~~e~~~~~f~~~~~~~~y 80 (390) T protein:vir:10 1 MTYSNDPPNNCIQSDYTSSCRLNLNGSAQEQTFMENLIVESIELYGQNVYYLPRIYVNRDTILNEVETSRFEQALSVRAY 80 (390) T ss_pred CeecCCCcccceecceeeccEEEEeccCchhHHHHHHHHHHhHhcCceEEEechheeccccccccccccccccceEEEEE Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhcc-------CCCccccEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014792. 90 LDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNG-------TEPIAGDLIYFPLDNSLFEITWVQPYDPFYQVG 162 (261) Q Consensus 90 ~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~-------~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~G 162 (261) |+|||||+|+++||||||||++|||||+|||+||++++++ +||+|||||||||+++||||+||||++||||+| T Consensus 81 ~~~~~~~~~~~~~~skfg~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~p~egdliy~p~~~~lfei~~ve~~~p~yq~G 160 (390) T protein:vir:10 81 VNNVEGWEGQGDLLSKFGVRIEDKTTFIFSRKKFTTAVDDNAVLNVEGRPNEGDLIWFPATRHLFEIKFVEAERPFYQLG 160 (390) T ss_pred eechhccCCccceeeecCceecceEEEEECCcchhhhhCCcccccccCCCCCCceEEecCCCCEEEEEecCCCCCceEcc Confidence 9999999999999999999999999999999999999998 599999999999999999999999999999999 Q ss_pred CceEEEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccc-cchhh-h-hhhhhhhhhhheecC Q lcl|NC_014792. 163 QNAIRKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPY-AESDE-I-NAEAAEYVKPYFVQN 239 (261) Q Consensus 163 k~~v~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~-~E~~~-~-~~e~~~~v~~~~~~n 239 (261) |+|+|+|+|++|+||+|.++++.++++.+.........+..+.+-.+-........ .-... . ..-...-|...-+.| T Consensus 161 ~nyt~~i~a~lf~ySge~iat~~seid~I~~~~~~~v~~~~~t~g~~~~t~~~~v~~~g~ga~~~a~v~~g~Vt~vtItn 240 (390) T protein:vir:10 161 KGYVWECQCELFEYSDEDLDTGVAEIDAIETAFANAIKLVMDAGGTGAFTVGEEIVGDLYLATATATISGDAVDAVTVTD 240 (390) T ss_pred CceeeeeEEeeeccCCccccccccccccccccccceeeeeeccCCcccccccceeeecCcceeEEEEecCCeEEEEEEee Confidence 99999999999999999999999999999877665555443333222111110000 00000 0 000122333333444 Q ss_pred -CCCCCCC--CC-------CCCCCCCcccccC Q lcl|NC_014792. 240 -GRGLESP--PK-------AKQDSFDDSFFDE 261 (261) Q Consensus 240 -~~g~~~~--~~-------~~~~~f~~~~~~~ 261 (261) |+|-... |+ +...... +-.+. T Consensus 241 ~GsGYt~~~~ptVtisgg~gtgAt~t-atv~~ 271 (390) T protein:vir:10 241 GGEHYKSALPPTVTITGGGGSGATAT-ATVSS 271 (390) T ss_pred CCCCcccCceeEEEecCCCCccceee-eeecc Confidence 2332221 11 0000000 00111 No 16 >protein:vir:104739 Length: 470 # NCBI annotation: T4-like neck protein # Family: family:all:1104 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214353;genbank:gi:61805993;genbank:GeneID:3294259 Probab=100.00 E-value=4.7e-83 Score=471.91 Aligned_cols=225 Identities=29% Similarity=0.600 Sum_probs=173.8 Q ss_pred ccccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheecccccccccccccccccceeeeeccchhhccCccchhhh Q lcl|NC_014792. 25 EILNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQSKFDKAWKFAGYLDTFDAYQGDGSIFS 104 (261) Q Consensus 25 ~~~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~skF~~a~~ieaY~~n~egf~g~gd~~S 104 (261) -.|||||| |||.+||+|+|+||+|||||||+||||||||+|++|+||+|+++|||++||+|||||+|||||+|+++||| T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (470) T protein:vir:10 1 MALNPFFL-QGTSSEQRLTQDLINEHLKIYGVEVTYIPRKYVNTKSIIEEVQSSKFDDNFAIEAYVNTYEGYGGQGDVLT 79 (470) T ss_pred CcccceeE-cCCCchhHHHHHHHHHHhHhccceEEEechhhcccccccccccccccccceeEEEEeecccCcCCcceeee Confidence 78999997 99999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCceeeeeEEEEEcchhhh------------------hhhccCCCccccEEEEcCCCcEEEEeeeccCChhhhhCCceE Q lcl|NC_014792. 105 KFGMTVNDEITVSINPNLFK------------------HQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQVGQNAI 166 (261) Q Consensus 105 KFG~~~~DEit~~IS~~~F~------------------~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~Gk~~v 166 (261) ||||+++|||+|+|||+||+ +|+.+.||+|||||||||+|+||||+|||+++||||+||+++ T Consensus 80 ~fg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~egdl~~~p~~~~~~~i~~ve~~~p~~~~G~~~~ 159 (470) T protein:vir:10 80 KFGMSIRDEVTLTISKERFEDFIAPFMAGLDDGPGGNEEVILATRPREGDLVFFPLGSRLFEVKFVEHEDPFYQLGKNYV 159 (470) T ss_pred ecCcccceEEEEEECCccccccccchhhcccCcccccccccccCCcccccEEEecCCCCEEEEEecCCCCcchhcCccee Confidence 99999999999999999995 566679999999999999999999999999999999999999 Q ss_pred EEEEEEEEecCCCccCccccccccccCCCcccccHHHHHHhhhhhhcCcccccchhhhhhhhhhhhhhheecC-CCCCCC Q lcl|NC_014792. 167 RKITASKYIYSGEELKPELQRNEGINIPEFSELDLQPIHNIDGLTDISDIPYAESDEINAEAAEYVKPYFVQN-GRGLES 245 (261) Q Consensus 167 ~~l~c~~F~YS~E~i~t~~~~~d~i~~~~~~~ldld~i~~lDg~~di~~~~~~E~~~~~~e~~~~v~~~~~~n-~~g~~~ 245 (261) |+|+|++|+|++|.+++.+..++.......+..... +++.-- ...... ..+...|....+.| |.|... T Consensus 160 ~~it~~~f~ysge~~s~~v~~~~~~~~~~g~~~t~t----~~~~g~----~~~~t~---~~~~g~vt~ititn~Gsgyt~ 228 (470) T protein:vir:10 160 YQLKCELFEYEDEVIDTSIDAIDTVVQDDGYISKLQ----LVGIGR----TAEVAA---SIGVGYVREIFLNNDGSGFTS 228 (470) T ss_pred EEeeeceeEecCCccccceecccccccccccceeee----ecCCCc----cceeee---eecceeeeEeEeeccccceec Confidence 999999999999999999988887775433211111 111000 000000 01122233333333 333333 Q ss_pred CCC---CCCCCCCcc-------cccC Q lcl|NC_014792. 246 PPK---AKQDSFDDS-------FFDE 261 (261) Q Consensus 246 ~~~---~~~~~f~~~-------~~~~ 261 (261) +|+ ........+ --.. T Consensus 229 ~ptVti~~~~~~~~~~a~~~~~t~~~ 254 (470) T protein:vir:10 229 PPTITFSASPAFTDARAVGILTTRAN 254 (470) T ss_pred cCEEEEccCCCCCCccceeeEeecce Confidence 332 001111000 0000 No 17 >protein:vir:1385 Length: 107 # NCBI annotation: Gp8 protein # Family: family:all:3858 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612837;genbank:gi:20065971;genbank:GeneID:935786 Probab=35.81 E-value=1.2 Score=20.13 Aligned_cols=106 Identities=8% Similarity=0.058 Sum_probs=74.3 Q ss_pred hcCcc-eEeeeheecccccccccccccccccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCC Q lcl|NC_014792. 53 MRGMS-LYYIPRQFVKPDLLFGEDLQSKFDKAWKFAGYLDTFDAYQGDGSIFSKFGMTVNDEITVSINPNLFKHQCNGTE 131 (261) Q Consensus 53 m~G~d-v~YipRe~v~~D~v~~E~~~skF~~a~~ieaY~~n~egf~g~gd~~SKFG~~~~DEit~~IS~~~F~~~~~~~~ 131 (261) |.+-. |....++ ..+|.. |... ..+...+++-|.+...-| .++++-=+++..-.+.|+| ||..-++... T Consensus 1 ~~~~hRI~i~~~~-~~~D~~-G~~~-~~w~~~~~~WA~v~~~~g----~E~~~a~~~~~~~~~~f~i---Ry~~~i~~~~ 70 (107) T protein:vir:13 1 MARYERISIKKLE-EKNIKG-RRQE-ECLIPFYDCWAEILDLYG----QELYGALQMKLENTIIFKI---RYCKKVEELR 70 (107) T ss_pred CCcceEEEEEeee-eeeCCC-CCee-cceEeEEEEEEEEecCCc----hheeecceeheeeeEEEEE---EecCCccccc Confidence 76654 4444444 346755 6554 468899999999998754 5666666777778888887 3444455566 Q ss_pred CccccEEEEcCCCcEEEEeeeccCChhhhhCCceEEEEEEEEEe Q lcl|NC_014792. 132 PIAGDLIYFPLDNSLFEITWVQPYDPFYQVGQNAIRKITASKYI 175 (261) Q Consensus 132 P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~Gk~~v~~l~c~~F~ 175 (261) +..++-|.+ ++.+|+|+.|.+.+ +++-..+|.|+.=. T Consensus 71 ~t~~~Ri~~--~g~~y~I~~v~~~~-----~~~~~l~i~c~eV~ 107 (107) T protein:vir:13 71 NKENFIVEW--QGRKYEIYYPDFLG-----YNKQFVKLKCKEVL 107 (107) T ss_pred cCcCcEEEE--CCeEEEEEecCCcc-----cCCeEEEEEEEEeC Confidence 677777776 78899999997543 25557899999877 No 18 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=24.85 E-value=2.1 Score=18.79 Aligned_cols=121 Identities=11% Similarity=0.140 Sum_probs=75.9 Q ss_pred ccceeeecccchhHHHHHHHHHHHHHhcCcceEeeeheecccccccccccc-cccccceeeeeccchhhccCccchhhhh Q lcl|NC_014792. 27 LNPYVNFMHHENTQTLADAIVAESIQMRGMSLYYIPRQFVKPDLLFGEDLQ-SKFDKAWKFAGYLDTFDAYQGDGSIFSK 105 (261) Q Consensus 27 ~npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YipRe~v~~D~v~~E~~~-skF~~a~~ieaY~~n~egf~g~gd~~SK 105 (261) .+.| ..-+. ...++|+-+|..|.+.+..-..-|+-.|+... +.-...|...+.+.++.--.=+|.+ T Consensus 1 M~~y------~~~~~----~a~~Li~kfG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~~~~idGtl--- 67 (122) T protein:vir:97 1 MARF------DSAIA----LAKKLIKKNGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYEQRYIDGQT--- 67 (122) T ss_pred Cccc------hHHHH----HHHHHHHHhCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccchhhccCcE--- Confidence 2222 22333 44555666999999888877666766665322 3335678999999888754433322 Q ss_pred cCceeeeeEEEEEcchhhhhhhccCCCccccEEEEcCCCcEEEEeeeccCChhhhhCCceEEEEEEEE Q lcl|NC_014792. 106 FGMTVNDEITVSINPNLFKHQCNGTEPIAGDLIYFPLDNSLFEITWVQPYDPFYQVGQNAIRKITASK 173 (261) Q Consensus 106 FG~~~~DEit~~IS~~~F~~~~~~~~P~EGDLIYfPm~n~LFEI~~Ve~~~PFyQ~Gk~~v~~l~c~~ 173 (261) |+..|..-+...... .-.|+-||+|-+ +..-|.|-.|++-+| .|--..|+|...+ T Consensus 68 --I~~GD~~l~~~a~~~------~~~P~~gD~v~~--~g~~~~Vi~v~~i~p---a~~~v~y~lqlRk 122 (122) T protein:vir:97 68 --IRMGDQRVFMPAEGL------TAPPEVEGLVLR--GLEVWKVIAVKPLNP---NGQAIMYELQVRQ 122 (122) T ss_pred --EeecCEEEEEeeCCC------ccccccCCEEEe--CCEEEEEEeccccCC---CCceEEEEEEeeC Confidence 455555444332221 236888999966 556789999987665 5556677777777 Done!