Query lcl|NC_014458.1_cdsid_YP_003856894.1 [gene=16] [protein=gp16] [protein_id=YP_003856894.1] [location=9672..9953] Match_columns 93 No_of_seqs 6 out of 9 Neff 2.1 Searched_HMMs 1612 Date Thu Nov 7 13:51:43 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_15 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_15_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:2507 Length: 83 # 100.0 2.1E-45 1.3E-48 265.5 6.5 81 8-93 1-82 (83) 2 protein:vir:99924 Length: 87 # 100.0 8.2E-42 5.1E-45 245.8 6.7 86 3-93 1-87 (87) 3 protein:vir:94763 Length: 78 # 97.9 1.6E-08 1E-11 63.3 3.1 77 1-88 1-78 (78) 4 protein:vir:1642 Length: 78 # 97.9 1.6E-08 1E-11 63.3 3.1 77 1-88 1-78 (78) 5 protein:vir:9763 Length: 89 # 97.7 4.3E-08 2.7E-11 61.0 2.4 77 1-88 12-89 (89) 6 protein:vir:9578 Length: 78 # 97.7 6.6E-08 4.1E-11 60.0 3.0 77 1-88 1-78 (78) 7 protein:vir:104091 Length: 111 66.2 0.082 5.1E-05 26.5 4.6 87 1-93 1-109 (111) 8 protein:vir:106570 Length: 182 43.7 0.55 0.00034 22.0 5.2 87 1-93 1-114 (182) 9 protein:vir:7776 Length: 119 # 25.8 1.7 0.001 19.4 4.7 85 1-93 1-95 (119) 10 protein:vir:98468 Length: 90 # 23.6 1.3 0.00083 19.9 3.8 87 1-93 1-89 (90) No 1 >protein:vir:2507 Length: 83 # NCBI annotation: hypothetical protein # Family: family:all:1171 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569748;genbank:gi:18496898;genbank:GeneID:932258 Probab=100.00 E-value=2.1e-45 Score=265.50 Aligned_cols=81 Identities=42% Similarity=0.631 Sum_probs=79.3 Q ss_pred CCCchhhhhccChhHHHHHHHHHHHhhhhhhhhhcccCCCCCCCcccceeecCceeEEEEeec-CceeeeecccCCcccc Q lcl|NC_014458. 8 LPFSEHRKIRNLPDLTKACEKLGDKLRDKAAAKANAHTPGAGDDYVTETVHGRDRVRVYVRAE-GAAIGVENDIAPLMQV 86 (93) Q Consensus 8 ~P~SEh~KIR~spev~~a~~~la~~~~~ka~a~a~~~~~GdpdgY~te~~vGsDR~Ra~V~ae-~kAiraE~k~aPlMqi 86 (93) |||||||||||||||||+||+||.+|+++|++++ |++|||+||++|||||+||||||+ +++|++|++++||||| T Consensus 1 ~P~SehrKIR~lpev~kacq~lga~ia~~Ag~iA-----~a~DgYgte~~vGrdR~Rv~V~a~~~aaikaE~~~aPlmq~ 75 (83) T protein:vir:25 1 MPNSEHRKIRKLPEVQAELQRLAAEVARRAGGIA-----DAPDGYGTDLEVGRTRARAHVWPKSSAAIKAEIKTAPLMTI 75 (83) T ss_pred CCCcccchhccchhHHHHHHHhhHHHhhhhcccc-----CCCCCcccceeecCceeeEEEeecCCceeeecccCCcchhh Confidence 9999999999999999999999999999998887 779999999999999999999999 9999999999999999 Q ss_pred cccccCC Q lcl|NC_014458. 87 SAESGPR 93 (93) Q Consensus 87 aAe~GP~ 93 (93) ||||||| T Consensus 76 aAe~gp~ 82 (83) T protein:vir:25 76 AAEQGPQ 82 (83) T ss_pred hhhcCCC Confidence 9999999 No 2 >protein:vir:99924 Length: 87 # NCBI annotation: gp11 # Family: family:all:1171 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655528;genbank:gi:109392298;genbank:GeneID:4157093 Probab=100.00 E-value=8.2e-42 Score=245.84 Aligned_cols=86 Identities=31% Similarity=0.494 Sum_probs=81.0 Q ss_pred CccccCCCchhhhhccChhHHHHHHHHHHHhhhhhhhhhcccCCCCCCCcccceeecCceeEEEEeec-CceeeeecccC Q lcl|NC_014458. 3 YRPLDLPFSEHRKIRNLPDLTKACEKLGDKLRDKAAAKANAHTPGAGDDYVTETVHGRDRVRVYVRAE-GAAIGVENDIA 81 (93) Q Consensus 3 y~pLd~P~SEh~KIR~spev~~a~~~la~~~~~ka~a~a~~~~~GdpdgY~te~~vGsDR~Ra~V~ae-~kAiraE~k~a 81 (93) .--||||||||||||||||||++||+||.+|+++|++++ |+||||+||++|||||+||||||+ +++|++|++++ T Consensus 1 ~~~l~~P~SehrKIR~lpev~kacq~lga~ia~~Ag~iA-----ga~DgYgte~~vGrdR~Rv~V~a~~~aaikaE~~~a 75 (87) T protein:vir:99 1 MGKLKIPISDDKKIRRSSEVRKACQTIGATIAVTAGRIA-----GDSDGYGVEETVGSDRTRVNVYAQHNKTMKAEAGAT 75 (87) T ss_pred CCcccCCcccchhhccchhHHHHHHHhhhHHhhhhcccc-----CCCCCceeeeeecCceeEEEEeecCCceeeeccCCC Confidence 678999999999999999999999999999999988887 999999999999999999999999 99999999999 Q ss_pred CcccccccccCC Q lcl|NC_014458. 82 PLMQVSAESGPR 93 (93) Q Consensus 82 PlMqiaAe~GP~ 93 (93) |||||||-.=-. T Consensus 76 Plmq~aA~~~~~ 87 (87) T protein:vir:99 76 PPLQQAAMRVRK 87 (87) T ss_pred chhhhhhhhhcC Confidence 999999864333 No 3 >protein:vir:94763 Length: 78 # NCBI annotation: unknown # Family: family:all:1171 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996710;genbank:gi:45597425;genbank:GeneID:2769032 Probab=97.89 E-value=1.6e-08 Score=63.25 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=64.5 Q ss_pred CCCccccCCCchhhhhccChhHHHHHHHHHHHhhhhhhhhhcccCCCCCCCcccceeecCceeEEEEeec-Cceeeeecc Q lcl|NC_014458. 1 MPYRPLDLPFSEHRKIRNLPDLTKACEKLGDKLRDKAAAKANAHTPGAGDDYVTETVHGRDRVRVYVRAE-GAAIGVEND 79 (93) Q Consensus 1 mpy~pLd~P~SEh~KIR~spev~~a~~~la~~~~~ka~a~a~~~~~GdpdgY~te~~vGsDR~Ra~V~ae-~kAiraE~k 79 (93) |----+++--.--+.|++||++|+.|.+.|+.|+.+| ++||..|+-+|.+|+++.|.|+ .+|++-+.| T Consensus 1 Ms~~kfklN~aGv~~llks~~iQa~l~~~a~~i~~ra-----------G~gy~~dv~vgk~Ra~a~V~~~t~~A~~~N~K 69 (78) T protein:vir:94 1 MAKNLFKLNRSGVASMMKSPEMQAILKEKASAVKQRC-----------GPGYGQDMHVGKNRANAMVFAETYQAKRDNMK 69 (78) T ss_pred CCcceeEeCHHHHHHHhcCchhHHHHHHHHHHHHHhh-----------cCcceeccccCCcccceEeccCChhhHHhhhh Confidence 5554555555667889999999999999999997555 5789999999999999999998 999999999 Q ss_pred cCCcccccc Q lcl|NC_014458. 80 IAPLMQVSA 88 (93) Q Consensus 80 ~aPlMqiaA 88 (93) .--|+-.-- T Consensus 70 hNTLLKAv~ 78 (78) T protein:vir:94 70 NNTILKAVR 78 (78) T ss_pred cchhhhhcC Confidence 888775443 No 4 >protein:vir:1642 Length: 78 # NCBI annotation: hypothetical protein # Family: family:all:1171 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695063;genbank:gi:23455754;genbank:GeneID:955475 Probab=97.89 E-value=1.6e-08 Score=63.25 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=64.5 Q ss_pred CCCccccCCCchhhhhccChhHHHHHHHHHHHhhhhhhhhhcccCCCCCCCcccceeecCceeEEEEeec-Cceeeeecc Q lcl|NC_014458. 1 MPYRPLDLPFSEHRKIRNLPDLTKACEKLGDKLRDKAAAKANAHTPGAGDDYVTETVHGRDRVRVYVRAE-GAAIGVEND 79 (93) Q Consensus 1 mpy~pLd~P~SEh~KIR~spev~~a~~~la~~~~~ka~a~a~~~~~GdpdgY~te~~vGsDR~Ra~V~ae-~kAiraE~k 79 (93) |----+++--.--+.|++||++|+.|.+.|+.|+.+| ++||..|+-+|.+|+++.|.|+ .+|++-+.| T Consensus 1 Ms~~kfklN~aGv~~llks~~iQa~l~~~a~~i~~ra-----------G~gy~~dv~vgk~Ra~a~V~~~t~~A~~~N~K 69 (78) T protein:vir:16 1 MAKNLFKLNRSGVASMMKSPEMQAILKEKASAVKQRC-----------GPGYGQDMHVGKNRANAMVFAETYQAKRDNMK 69 (78) T ss_pred CCcceeEeCHHHHHHHhcCchhHHHHHHHHHHHHHhh-----------cCcceeccccCCcccceEeccCChhhHHhhhh Confidence 5554555555667889999999999999999997555 5789999999999999999998 999999999 Q ss_pred cCCcccccc Q lcl|NC_014458. 80 IAPLMQVSA 88 (93) Q Consensus 80 ~aPlMqiaA 88 (93) .--|+-.-- T Consensus 70 hNTLLKAv~ 78 (78) T protein:vir:16 70 NNTILKAVR 78 (78) T ss_pred cchhhhhcC Confidence 888775443 No 5 >protein:vir:9763 Length: 89 # NCBI annotation: hypothetical protein # Family: family:all:1171 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795525;genbank:gi:28876279;genbank:GeneID:1257820 Probab=97.69 E-value=4.3e-08 Score=60.96 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=62.8 Q ss_pred CCCccccCCCchhhhhccChhHHHHHHHHHHHhhhhhhhhhcccCCCCCCCcccceeecCceeEEEEeec-Cceeeeecc Q lcl|NC_014458. 1 MPYRPLDLPFSEHRKIRNLPDLTKACEKLGDKLRDKAAAKANAHTPGAGDDYVTETVHGRDRVRVYVRAE-GAAIGVEND 79 (93) Q Consensus 1 mpy~pLd~P~SEh~KIR~spev~~a~~~la~~~~~ka~a~a~~~~~GdpdgY~te~~vGsDR~Ra~V~ae-~kAiraE~k 79 (93) |----+++--.--+.|++||++|++|...|+.|+.+| ++||+.++-+|.+|+++.|+|+ .+|++-+.| T Consensus 12 MskvkfklN~aGvr~llks~~iQa~l~~~A~~I~~rA-----------g~gY~adv~~Gk~Ra~a~V~t~t~~A~~~N~K 80 (89) T protein:vir:97 12 MSKFKFKLNKAGVAELMKSSEMQQVLTTKATAIRERC-----------GDGYAQDIHVGKNRANAMVSAKTIKAKKDNSK 80 (89) T ss_pred hhcceeeeCHHHHHHHhcChhHHHHHHHHHHHHHHhh-----------ccccccccccCCcccceEeccCChHHHHhhhh Confidence 4433344444556889999999999999999997555 5789999999999999999998 999999998 Q ss_pred cCCcccccc Q lcl|NC_014458. 80 IAPLMQVSA 88 (93) Q Consensus 80 ~aPlMqiaA 88 (93) .--|+-.-- T Consensus 81 HNTLLKAv~ 89 (89) T protein:vir:97 81 NNTLLKAVR 89 (89) T ss_pred hhhhhhhcC Confidence 887775433 No 6 >protein:vir:9578 Length: 78 # NCBI annotation: gp44 # Family: family:all:1171 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862883;genbank:gi:32469475;genbank:GeneID:1461320 Probab=97.66 E-value=6.6e-08 Score=59.97 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=63.2 Q ss_pred CCCccccCCCchhhhhccChhHHHHHHHHHHHhhhhhhhhhcccCCCCCCCcccceeecCceeEEEEeec-Cceeeeecc Q lcl|NC_014458. 1 MPYRPLDLPFSEHRKIRNLPDLTKACEKLGDKLRDKAAAKANAHTPGAGDDYVTETVHGRDRVRVYVRAE-GAAIGVEND 79 (93) Q Consensus 1 mpy~pLd~P~SEh~KIR~spev~~a~~~la~~~~~ka~a~a~~~~~GdpdgY~te~~vGsDR~Ra~V~ae-~kAiraE~k 79 (93) |----+++--.--+.|++||++|++|...|+.|+.+| ++||+.++-+|.+|+++.|+|+ .+|++-+.| T Consensus 1 ms~~k~klN~aGvr~ll~s~~~Qa~l~~~A~~i~~ra-----------g~gY~~d~~~gk~Ra~a~V~~~t~~A~~~N~k 69 (78) T protein:vir:95 1 MSNTKIKLIGAGVGALLKSKEIQDILNKEATVIKKRC-----------GPGYEQDSHVGKTRANAMIYPTTRKAKRDNLK 69 (78) T ss_pred CCcceeeeCHHHHHHHhcChhHHHHHHHHHHHHHHhh-----------ccccccccccCCcccceEeecCChHHHHhhhh Confidence 5444444444556889999999999999999997555 5789999999999999999998 999999998 Q ss_pred cCCcccccc Q lcl|NC_014458. 80 IAPLMQVSA 88 (93) Q Consensus 80 ~aPlMqiaA 88 (93) .--|+-.-- T Consensus 70 hNTLLKAv~ 78 (78) T protein:vir:95 70 NNTLLKAVH 78 (78) T ss_pred hhhhhhhcC Confidence 888775433 No 7 >protein:vir:104091 Length: 111 # NCBI annotation: gp23 # Family: family:all:2819 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655602;genbank:gi:109392473;genbank:GeneID:4156959 Probab=66.22 E-value=0.082 Score=26.54 Aligned_cols=87 Identities=18% Similarity=0.253 Sum_probs=63.7 Q ss_pred CCCccccC-CCchhhhhccChhHHHHHHHHHHHhhhhhhh---hhcccCCCCCCCcc-cceeecCceeEEEEeec-Ccee Q lcl|NC_014458. 1 MPYRPLDL-PFSEHRKIRNLPDLTKACEKLGDKLRDKAAA---KANAHTPGAGDDYV-TETVHGRDRVRVYVRAE-GAAI 74 (93) Q Consensus 1 mpy~pLd~-P~SEh~KIR~spev~~a~~~la~~~~~ka~a---~a~~~~~GdpdgY~-te~~vGsDR~Ra~V~ae-~kAi 74 (93) |- |+ -+.. +-+-++++|++++.+-+++|.+||-+ .+.+++.=.+-||. +++++-.+-+-++|.=+ +.+| T Consensus 1 ma----~vy~~~n-~vva~l~~vk~avr~e~~~v~~RAr~nLa~Arastr~~~~G~~pt~I~~a~gDVD~~v~l~apnam 75 (111) T protein:vir:10 1 MA----KVYANAN-EAAARHVDTKRAVRRVNRDVEGRARSNLAQANSTTRVTPTGYFPAEIDSSEHDVDCYTTLHAPNAM 75 (111) T ss_pred Cc----ccccccC-cEEeechhhHHHHHHHHhhhhhHHHHHHHHhhhcccccccCcccceeeeecCCcceEEEecCCCch Confidence 21 11 1222 25678999999999999999999864 56777777888998 88888888899999887 8899 Q ss_pred eeecccCCc----------------ccccccccCC Q lcl|NC_014458. 75 GVENDIAPL----------------MQVSAESGPR 93 (93) Q Consensus 75 raE~k~aPl----------------MqiaAe~GP~ 93 (93) --|.+-+|- ++.|| -|=| T Consensus 76 aiEfGh~psG~f~~~~tkap~glyILTrAA-~gg~ 109 (111) T protein:vir:10 76 ALEFGHEPSGVFAGTDTKSPDPQYILTRAA-YGGH 109 (111) T ss_pred hhhhccCccceecccccCCCCCceeeeecc-cccc Confidence 888887763 22233 3333 No 8 >protein:vir:106570 Length: 182 # NCBI annotation: putative protein # Family: family:all:6475 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958588;genbank:gi:41179258;genbank:GeneID:2717106 Probab=43.67 E-value=0.55 Score=22.02 Aligned_cols=87 Identities=18% Similarity=0.083 Sum_probs=46.0 Q ss_pred CCCccccCCCc--hhhhhccChh---------HHHHHHHHHHHhhhhhhhhhcccCCCCC----CCcccceeecCceeEE Q lcl|NC_014458. 1 MPYRPLDLPFS--EHRKIRNLPD---------LTKACEKLGDKLRDKAAAKANAHTPGAG----DDYVTETVHGRDRVRV 65 (93) Q Consensus 1 mpy~pLd~P~S--Eh~KIR~spe---------v~~a~~~la~~~~~ka~a~a~~~~~Gdp----dgY~te~~vGsDR~Ra 65 (93) |= -+++=-. =.+|+++.|+ +.++++++++.+.+.|-..+ |=|. +...+++++..+.+.. T Consensus 1 m~--~v~i~Gld~L~~kl~~~~~~~~~~v~~a~~~~~~~~a~~v~~~ak~~~----PvdtG~Lr~SI~~~~~~~~~~~~g 74 (182) T protein:vir:10 1 MI--EVELKGVNELRAKLKKLPDIMAKATANAQENAIEQAEAYAVDELQSSI----KYSTGELTRSFKHEVKVDGDEVIG 74 (182) T ss_pred Ce--EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCchhhhhceeeeeeecCCeEEE Confidence 21 0111111 1456666653 22222333344433333322 2222 2245678888889999 Q ss_pred EEeec-CceeeeecccCCcccccc-----------cccCC Q lcl|NC_014458. 66 YVRAE-GAAIGVENDIAPLMQVSA-----------ESGPR 93 (93) Q Consensus 66 ~V~ae-~kAiraE~k~aPlMqiaA-----------e~GP~ 93 (93) .||.. +-|+=.|.+|-|.++..- ++.|- T Consensus 75 ~V~~~~~ya~yvE~GTG~~~~~~~~~~~p~~~~~~~~~~w 114 (182) T protein:vir:10 75 RWWNSSMVAVFREFGTGLVGERSHKQLPKNVAIIYRQTPW 114 (182) T ss_pred EeecCCCccceeecCcccccccCccccCccceeeeecCCc Confidence 99997 999999999877664333 33332 No 9 >protein:vir:7776 Length: 119 # NCBI annotation: gp21 # Family: family:all:2819 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817610;genbank:gi:29566040;genbank:GeneID:1259234 Probab=25.78 E-value=1.7 Score=19.36 Aligned_cols=85 Identities=22% Similarity=0.196 Sum_probs=56.5 Q ss_pred CCCccccCCCch-hhhhccChhHHHHHHHHHHHhhhhhhhhhc---ccCC----CCCCCcccceeecCceeEEEEeec-C Q lcl|NC_014458. 1 MPYRPLDLPFSE-HRKIRNLPDLTKACEKLGDKLRDKAAAKAN---AHTP----GAGDDYVTETVHGRDRVRVYVRAE-G 71 (93) Q Consensus 1 mpy~pLd~P~SE-h~KIR~spev~~a~~~la~~~~~ka~a~a~---~~~~----GdpdgY~te~~vGsDR~Ra~V~ae-~ 71 (93) |+- -++.+- .+-|-.+++||+++.+=+.+|.+||-+--+ +++. =-|+|+ +++++-.+-+-.+|.=+ + T Consensus 1 Ma~---~y~~~~ln~vvA~l~~v~~~v~~E~~~v~~RA~~NLa~Arast~~~k~~gp~~~-~~Id~a~gdvD~~v~l~ap 76 (119) T protein:vir:77 1 MAR---LIGQKAMNHVISHLDGVKDAVYAEAKERGRKAEANLAQARASTRWHKIFGPDHL-TRVTVTRGDVDSFINLEAP 76 (119) T ss_pred Ccc---cccccchhhhhhhchhHHHHHHHHHHhhhHHHHHHHHHHhhcccccceecCCCc-ceeccccCCcceEEeecCC Confidence 542 224431 235778999999999999999999865321 1111 126777 78877777788888887 8 Q ss_pred ceeeeecccCCcccccccccC-C Q lcl|NC_014458. 72 AAIGVENDIAPLMQVSAESGP-R 93 (93) Q Consensus 72 kAiraE~k~aPlMqiaAe~GP-~ 93 (93) .++--|.+-+|-.-- || + T Consensus 77 na~aIEfGhapsgvf----~pG~ 95 (119) T protein:vir:77 77 NAMAIEFGHQPSGVF----GPGG 95 (119) T ss_pred Cchhhccccccccee----cccc Confidence 888888887774322 34 1 No 10 >protein:vir:98468 Length: 90 # NCBI annotation: ORF5 # Family: family:all:32435 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958283;genbank:gi:41057257;uniprot:Q38598;genbank:GeneID:2732852 Probab=23.57 E-value=1.3 Score=19.90 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=44.1 Q ss_pred CCCccccC-CCc-hhhhhccChhHHHHHHHHHHHhhhhhhhhhcccCCCCCCCcccceeecCceeEEEEeecCceeeeec Q lcl|NC_014458. 1 MPYRPLDL-PFS-EHRKIRNLPDLTKACEKLGDKLRDKAAAKANAHTPGAGDDYVTETVHGRDRVRVYVRAEGAAIGVEN 78 (93) Q Consensus 1 mpy~pLd~-P~S-Eh~KIR~spev~~a~~~la~~~~~ka~a~a~~~~~GdpdgY~te~~vGsDR~Ra~V~ae~kAiraE~ 78 (93) |--.-..| |+- .-...-+||+++..++.--+.+ ..|++.++- -|.+-|.||++-|+.|+|--|.-.-..---|. T Consensus 1 mar~~fr~~~nRRniA~FLrsp~tr~~iE~kTRa~-E~AA~aaa~---~D~GQFRTDv~~~~~RvRGAVIGDY~t~~pE~ 76 (90) T protein:vir:98 1 MAREGFQLSTTRRNVAAFLRSPGVRQAVEASTREI-EAAARQAAE---PDAGQFRTDITEESNRVRGAVIGDYATADPED 76 (90) T ss_pred CCCCCccccccchhhHHhhcChhHHHHHHHHHHHH-HHHHhhhcc---ccccceecccccccceecceeeccccCCChhh Confidence 32222111 111 1234568999999999876664 223222222 34567999999999999988865411111122 Q ss_pred ccCCcccccccccCC Q lcl|NC_014458. 79 DIAPLMQVSAESGPR 93 (93) Q Consensus 79 k~aPlMqiaAe~GP~ 93 (93) .-.-|+ .+-.|-+ T Consensus 77 sRraLL--RgLdg~R 89 (90) T protein:vir:98 77 SRRALL--RGLEGGR 89 (90) T ss_pred HHHHHH--Hhhhccc Confidence 211221 1112222 Done!