Query lcl|NC_013693.1_cdsid_YP_003358658.1 [gene=orf00202] [protein=Gp13 neck protein] [protein_id=YP_003358658.1] [location=complement(114950..115702)] Match_columns 250 No_of_seqs 37 out of 42 Neff 4.7 Searched_HMMs 1612 Date Thu Nov 7 14:35:08 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_171 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_171_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:5657 Length: 307 # 100.0 6E-123 4E-126 690.6 23.8 249 1-250 1-307 (307) 2 protein:vir:106428 Length: 306 100.0 2E-121 1E-124 682.6 25.8 248 1-250 2-306 (306) 3 protein:vir:104694 Length: 281 100.0 7E-120 4E-123 674.0 23.8 244 3-250 1-281 (281) 4 protein:vir:81013 Length: 310 100.0 9E-119 5E-122 667.9 24.8 248 1-250 1-310 (310) 5 protein:vir:6589 Length: 310 # 100.0 9E-119 5E-122 667.9 24.8 248 1-250 1-310 (310) 6 protein:vir:103451 Length: 309 100.0 1E-118 7E-122 667.4 23.8 246 1-250 1-309 (309) 7 protein:vir:6889 Length: 308 # 100.0 1E-118 9E-122 666.6 23.7 246 1-250 1-308 (308) 8 protein:vir:7198 Length: 309 # 100.0 1E-118 9E-122 666.7 23.1 246 1-250 1-309 (309) 9 protein:vir:101153 Length: 307 100.0 5E-118 3E-121 663.6 23.9 247 1-250 1-307 (307) 10 protein:vir:101857 Length: 307 100.0 5E-118 3E-121 663.6 23.9 247 1-250 1-307 (307) 11 protein:vir:107900 Length: 311 100.0 9E-118 6E-121 662.2 22.8 245 1-250 1-311 (311) 12 protein:vir:100534 Length: 314 100.0 6E-117 4E-120 657.9 24.6 247 1-250 1-314 (314) 13 protein:vir:98189 Length: 307 100.0 3E-116 2E-119 654.1 23.5 245 3-249 1-307 (307) 14 protein:vir:103004 Length: 268 100.0 3E-116 2E-119 653.7 17.0 245 1-250 1-268 (268) 15 protein:vir:104585 Length: 268 100.0 4E-115 2E-118 647.8 15.2 245 1-250 1-268 (268) 16 protein:vir:106985 Length: 276 100.0 5E-113 3E-116 636.2 11.3 243 3-250 1-276 (276) 17 protein:vir:104585 Length: 268 98.0 2.4E-08 1.5E-11 62.4 5.1 200 22-250 1-236 (268) 18 protein:vir:6589 Length: 310 # 97.4 3.1E-07 1.9E-10 56.3 3.5 228 1-247 18-310 (310) 19 protein:vir:81013 Length: 310 97.4 3.1E-07 1.9E-10 56.3 3.5 228 1-247 18-310 (310) 20 protein:vir:106985 Length: 276 97.1 2.6E-05 1.6E-08 45.7 11.3 182 24-250 1-244 (276) 21 protein:vir:103004 Length: 268 94.8 3.9E-05 2.4E-08 44.8 1.7 198 22-250 1-236 (268) No 1 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=100.00 E-value=6.2e-123 Score=690.57 Aligned_cols=249 Identities=27% Similarity=0.483 Sum_probs=238.4 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccceEEcCCccee Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKGYIEFPKDIDD 80 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~gyi~lp~~V~~ 80 (250) ||.++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++||||+++|||++|++|++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~vte~~~~~G~~d~~~~v~a 80 (307) T protein:vir:56 1 MQAYNATSPREMKDLILRRLGAPIVNVEVSEDQVYDCISRALELYIEYHPDGVNKTYSIISLSEEQAQTGIIDLDIPATA 80 (307) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEechhhccCCeEecCcchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeeeec-Ccccccccceeeccc------------cccccccccccccccchhHHHHHHHHHHHHHHHhcCCceeeecCc Q lcl|NC_013693. 81 VTEVIPG-PPIESIGNWATPQWQ------------MAQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTFVYKKF 147 (250) Q Consensus 81 V~kI~r~-~s~~~~~g~~~~~~~------------~~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f~fN~~ 147 (250) ||+|+|+ +|..+|+|+|+++|+ .++++..+++++++.+|++|++++||+++++++|+|.|+||||++ T Consensus 81 vt~Iirt~~s~~t~dg~aty~w~tdfi~~~~gv~g~~~~~~~~~~~~~~~~l~y~~~~~sy~~~l~d~~~p~~d~~yn~~ 160 (307) T protein:vir:56 81 ITKILRAESSFFTMDGNATYSWFSDFLQGLAGGPGAGSCNSYHQGMLGQGSLSDYWNLMSYKNMLTDLLSPEYDYWYNGV 160 (307) T ss_pred hhhhhccCcccccCCCccccCccccceecccccccccceeeecccccchhhhhHHHHHHHHHHHHHhhcccccceeecCc Confidence 9999986 788999999999996 234566777888878999999999999999999999999999999 Q ss_pred cCcEEEEEeeccCcEEEEEEeec---------------------------------------------CCCCcCCccccc Q lcl|NC_013693. 148 QRKLYPQFALTKDEALAFKCFQN---------------------------------------------IDPEVEGNEEAW 182 (250) Q Consensus 148 t~rL~i~~~~~~~d~lvie~y~~---------------------------------------------~dP~~~~~~~~Y 182 (250) |+||++.++++.||++++|||++ .||+.+..+++| T Consensus 161 ~~qL~~~~n~~~g~~~ive~~~~s~~~~~~~~~~~~~~~~~~~r~y~~~~~~~~~~n~~~~~~~~~~~~dp~~~t~~~~Y 240 (307) T protein:vir:56 161 NKQLRINANLSAGELIVVEAFVPSALLVSESATGIIGNKAATIGSYEDTTAQERWDDPYSILRQNNTIGNPNQFAEQNAY 240 (307) T ss_pred ceeeeeeeeeccCCeEEEEeeccchhhhhhhhhhhcceeeecCcccccCCchhhccCcceeeeccccccCCccccccccc Confidence 99999999999999999999863 588888778899 Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 183 NDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 183 Nd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) ||||||||||||+|++|||||+|||||||||||||||++|++||++|+|||||||++ +++|++++|| T Consensus 241 Nn~WvKdYaTALvK~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~-~~~P~~~liG 307 (307) T protein:vir:56 241 SVRWVKDMATAMTKQMNGVILKKHQGLQLPGGITIDGKEIYDEATQEIERLREELMS-LTVPLGVFMG 307 (307) T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhh-ccCCchhhcC Confidence 999999999999999999999999999999999999999999999999999999999 7899999999 No 2 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=100.00 E-value=1.7e-121 Score=682.63 Aligned_cols=248 Identities=24% Similarity=0.419 Sum_probs=230.7 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccceEEc-CCcce Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKGYIEF-PKDID 79 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~gyi~l-p~~V~ 79 (250) ||.++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|||+.++|||++ |++|+ T Consensus 2 Ms~~~~~s~~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~ed~~~~g~~d~~~~~v~ 81 (306) T protein:vir:10 2 MSNNFVRNPRELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQEQAATGYIDISAYPVF 81 (306) T ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEechhcccCCeEecCCccce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55699 Q ss_pred eeeeeeec--Ccccccccceeeccccc----------cccccccccccccchhHHHHHHHHHHHHHHHhcCCceeeecCc Q lcl|NC_013693. 80 DVTEVIPG--PPIESIGNWATPQWQMA----------QAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTFVYKKF 147 (250) Q Consensus 80 ~V~kI~r~--~s~~~~~g~~~~~~~~~----------~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f~fN~~ 147 (250) +||||||. ++..+|+|+++++|+-. ...++++++||+ +|++|++++|||+++++||+|.|+||||+. T Consensus 82 aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~~l~~~~~~~~~~g~~~~g~-dL~yy~~~~sy~~~lq~ml~p~pDf~~n~~ 160 (306) T protein:vir:10 82 AITKIIRHKSMMWGGLGGGATLNFFTDFLTTLGGGPQGISYHGPFGALG-NIGFFAQFQSYQNMMMDQLDPLPDYWLDPV 160 (306) T ss_pred eeeeeeccCcceeeeccccccccchhhhhhhhcccccchhhccchhhhh-hhhHHHHHHHHHHHHHHHhccccceeEcCC Confidence 99999996 56677889999999721 123577889998 999999999999999999999999999999 Q ss_pred cCcEEEEEeeccCcEEEEEEeec-------------------------------C-------------CCCcCCcccccc Q lcl|NC_013693. 148 QRKLYPQFALTKDEALAFKCFQN-------------------------------I-------------DPEVEGNEEAWN 183 (250) Q Consensus 148 t~rL~i~~~~~~~d~lvie~y~~-------------------------------~-------------dP~~~~~~~~YN 183 (250) +++|+|.+|+|++|.|++||+.+ + +|+.+.+|++|| T Consensus 161 ~~ql~i~~nf~~~D~l~~e~~~ks~~~v~~~~~~~~g~g~~~~~~~~~~~~~~~~np~~~l~~~~~g~~~~~~~~~~~YN 240 (306) T protein:vir:10 161 NGVVQLTGNFRENDVIIMEVHIQNFVELEKSVRGVAGAGIVAGGPTSADNKDKWMNPYSRMPSNVAGRARSEFPDQGVYN 240 (306) T ss_pred cceEEEEEeecCCcEEEEEeecccccccchhhhcccccccccCCccccchhhhhccchhhhccccccccCCCcccccccc Confidence 99999999999999999998754 1 234456789999 Q ss_pred chHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 184 DMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 184 d~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) |||||||||||+|++|||||+|||||||||||||||++|++||++|+|+|||||+++| +|+|++|| T Consensus 241 nrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGVTvdG~~i~eeA~~E~e~LreEL~~~~-~~ppi~mg 306 (306) T protein:vir:10 241 VRWVKDYATTLTKEVWGEILAKHQGMSLPGGVTVDGTRLVEEARQEKEVLRQELLLLE-EPLPILMG 306 (306) T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHhhhcc-CCCccccC Confidence 9999999999999999999999999999999999999999999999999999999998 67799999 No 3 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=100.00 E-value=6.6e-120 Score=673.96 Aligned_cols=244 Identities=33% Similarity=0.546 Sum_probs=231.7 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccceEEcCCc-ceee Q lcl|NC_013693. 3 VNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKGYIEFPKD-IDDV 81 (250) Q Consensus 3 ~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~gyi~lp~~-V~~V 81 (250) ||+|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|+|++++|+|++|++ +++| T Consensus 1 ma~p~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~~g~~d~~~~~~~av 80 (281) T protein:vir:10 1 MAKPASRQQLIDYCLRKLGAPVLEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADLDRGRAKGTDGVGIVT 80 (281) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhhcceeeecCcceeEE Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 8999 Q ss_pred eeeeecCcccccccceeeccccc---------------------------------cccccccccccccchhHHHHHHHH Q lcl|NC_013693. 82 TEVIPGPPIESIGNWATPQWQMA---------------------------------QAMLVPKSALVSIRLIDYVSMQQR 128 (250) Q Consensus 82 ~kI~r~~s~~~~~g~~~~~~~~~---------------------------------~~~l~~~~~~g~~~L~~y~~~~qy 128 (250) |+|+|..+ +|+|+|+++|+-+ +.|+++.+.|++++|++|+|++|| T Consensus 81 t~i~~t~~--~~~G~at~~w~~~~ny~~~p~~v~G~~~~~g~~s~~~~~~~f~~~yq~~lndly~~~~~~L~~y~m~~qy 158 (281) T protein:vir:10 81 TTATSTNI--AGYGTTTSSWYETSNFLQVPDSVVGIEKIFKFDTSTISGGMFSIKYQLFLNDLYNFNSVELLQYSMVKSY 158 (281) T ss_pred Eeeecccc--ccccccccchhhcccceecCccceeeeeeccccccccCcceeecchhhhhhhhccCCchhhhhhhhhhhh Confidence 99997544 4899999999631 235677788899999999999999 Q ss_pred HHHHHHHhcCCceeeecCccCcEEEEE---eeccCcEEEEEEeecCCCCcCCccccccchHHHHHHHHHHHHHHHHHHHh Q lcl|NC_013693. 129 LSDITSVLNVKRTFVYKKFQRKLYPQF---ALTKDEALAFKCFQNIDPEVEGNEEAWNDMWLKAYATALVKRRWAEVLKK 205 (250) Q Consensus 129 ~~~l~~~l~~~~~f~fN~~t~rL~i~~---~~~~~d~lvie~y~~~dP~~~~~~~~YNd~WvKdyaTAL~K~~wGqnL~K 205 (250) +++++++||+.++|+||++++||+++. +...|+++++|||+++||+ ++|++|||||||||||||+|++|||||+| T Consensus 159 l~~~d~v~n~~~~~~~n~~~drL~~d~d~~~~~~d~~~~~~~y~~~dP~--~~~~~YNnrWvKdYaTAL~K~~wGq~L~K 236 (281) T protein:vir:10 159 LEDIDFLLTTDKQVRFNKRQDRLYLDIDWGAESLDNFLVLDCYRALDPT--SFTQVYNDPFLKLYLTALMKRQWGQNLIK 236 (281) T ss_pred hhhhHhhcCCCceEEEeeeCCeEEEEEecccccCCCceEEeeeeccCCc--ccccccchhHHHHHHHHHHHHHHHHHHHH Confidence 999999999999999999999999999 5778999999999999997 57899999999999999999999999999 Q ss_pred hcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 206 ARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 206 fqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) ||||||||||||||++|++||++|+|+|||||+++|++|+.+||| T Consensus 237 ~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~pP~dmiG 281 (281) T protein:vir:10 237 FRGVKLPGGIELNGREIFDDAERDIESLRSRMASEYELPPYDFVG 281 (281) T ss_pred hCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCcccccC Confidence 999999999999999999999999999999999999999999999 No 4 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=100.00 E-value=8.5e-119 Score=667.89 Aligned_cols=248 Identities=25% Similarity=0.443 Sum_probs=230.5 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccceEEcCCc-ce Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKGYIEFPKD-ID 79 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~gyi~lp~~-V~ 79 (250) ||.++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++||||+++|||++|+. |+ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~ 80 (310) T protein:vir:81 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVF 80 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCccee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 99 Q ss_pred eeeeeeec--Ccccccccceeecccc-------------ccc--cccccccccccchhHHHHHHHHHHHHHHHhcCCcee Q lcl|NC_013693. 80 DVTEVIPG--PPIESIGNWATPQWQM-------------AQA--MLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTF 142 (250) Q Consensus 80 ~V~kI~r~--~s~~~~~g~~~~~~~~-------------~~~--~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f 142 (250) +||+|+|+ ||..+++|+++|+|+. +++ ..++++++|+ +|++|++++||+.+++++|||.|+| T Consensus 81 avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~-~l~y~~~l~~y~~~~q~~ln~lpdy 159 (310) T protein:vir:81 81 AVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGG-DLGYFEQLMSYRATMQNMLNPLPDY 159 (310) T ss_pred eeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccch-hhhhhhHHHHHHHHHHHHhCccccc Confidence 99999994 7899999999999972 122 3467889996 9999999999999999999999999 Q ss_pred eecCccCcEEEEEeeccCcEEEEEEeec--------------------------------------------CCCCcCCc Q lcl|NC_013693. 143 VYKKFQRKLYPQFALTKDEALAFKCFQN--------------------------------------------IDPEVEGN 178 (250) Q Consensus 143 ~fN~~t~rL~i~~~~~~~d~lvie~y~~--------------------------------------------~dP~~~~~ 178 (250) |||+++++|+|.+||+.||+|++|||++ .+|+.... T Consensus 160 ~yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (310) T protein:vir:81 160 WYNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISENK 239 (310) T ss_pred ccCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCcc Confidence 9999999999999999999999999855 12233356 Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 179 EEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 179 ~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) |++|||||||||||||+|++|||||+|||||||||||||||++|++||++|+|||||||+.+ .+|++++|= T Consensus 240 ~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~-~pP~~i~~~ 310 (310) T protein:vir:81 240 QGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELL-DPPFGILMI 310 (310) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhh-CCCCCeeeC Confidence 89999999999999999999999999999999999999999999999999999999999766 578887777 No 5 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=100.00 E-value=8.5e-119 Score=667.89 Aligned_cols=248 Identities=25% Similarity=0.443 Sum_probs=230.5 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccceEEcCCc-ce Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKGYIEFPKD-ID 79 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~gyi~lp~~-V~ 79 (250) ||.++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++||||+++|||++|+. |+ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g~~d~~d~~v~ 80 (310) T protein:vir:65 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHGVFDLSDSGVF 80 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCeeeeCCccee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985 99 Q ss_pred eeeeeeec--Ccccccccceeecccc-------------ccc--cccccccccccchhHHHHHHHHHHHHHHHhcCCcee Q lcl|NC_013693. 80 DVTEVIPG--PPIESIGNWATPQWQM-------------AQA--MLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTF 142 (250) Q Consensus 80 ~V~kI~r~--~s~~~~~g~~~~~~~~-------------~~~--~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f 142 (250) +||+|+|+ ||..+++|+++|+|+. +++ ..++++++|+ +|++|++++||+.+++++|||.|+| T Consensus 81 avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~-~l~y~~~l~~y~~~~q~~ln~lpdy 159 (310) T protein:vir:65 81 AVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGG-DLGYFEQLMSYRATMQNMLNPLPDY 159 (310) T ss_pred eeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccch-hhhhhhHHHHHHHHHHHHhCccccc Confidence 99999994 7899999999999972 122 3467889996 9999999999999999999999999 Q ss_pred eecCccCcEEEEEeeccCcEEEEEEeec--------------------------------------------CCCCcCCc Q lcl|NC_013693. 143 VYKKFQRKLYPQFALTKDEALAFKCFQN--------------------------------------------IDPEVEGN 178 (250) Q Consensus 143 ~fN~~t~rL~i~~~~~~~d~lvie~y~~--------------------------------------------~dP~~~~~ 178 (250) |||+++++|+|.+||+.||+|++|||++ .+|+.... T Consensus 160 ~yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (310) T protein:vir:65 160 WYNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISENK 239 (310) T ss_pred ccCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCcc Confidence 9999999999999999999999999855 12233356 Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 179 EEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 179 ~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) |++|||||||||||||+|++|||||+|||||||||||||||++|++||++|+|||||||+.+ .+|++++|= T Consensus 240 ~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~-~pP~~i~~~ 310 (310) T protein:vir:65 240 QGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELL-DPPFGILMI 310 (310) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhh-CCCCCeeeC Confidence 89999999999999999999999999999999999999999999999999999999999766 578887777 No 6 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=100.00 E-value=1.1e-118 Score=667.37 Aligned_cols=246 Identities=28% Similarity=0.486 Sum_probs=229.4 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeecc--ccccceEEc-CCc Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDD--TITKGYIEF-PKD 77 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted--~~~~gyi~l-p~~ 77 (250) ||.++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|+++++ +.++|||++ |++ T Consensus 1 ms~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:10 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhccceeeccCcc Confidence 99999999999999999999999999999999999999999999999999999999999999965 678999999 668 Q ss_pred ceeeeeeeec--Ccccccccceeeccc---------c----ccc--cccccccccccchhHHHHHHHHHHHHHHHhcCCc Q lcl|NC_013693. 78 IDDVTEVIPG--PPIESIGNWATPQWQ---------M----AQA--MLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKR 140 (250) Q Consensus 78 V~~V~kI~r~--~s~~~~~g~~~~~~~---------~----~~~--~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~ 140 (250) |++||+|+|. +|..+++|+|+|+|+ + +++ ..++|++||. +|++|++++||+++++++|+|.| T Consensus 81 v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~~~s~~~~~~pn~~g~-dl~y~~~l~sy~~m~~d~l~~~p 159 (309) T protein:vir:10 81 VFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGA-DLGYFTQLTSYMGMMQDMLSPIP 159 (309) T ss_pred hhhhhhhhhcccccccccCcccccccccchhhhhhhhhcccccccccccCccccee-hhHHHHhHHHHHHHHHHHhcccC Confidence 9999999994 888899999999995 1 122 3668899986 99999999999999999999999 Q ss_pred eeeecCccCcEEEEEeeccCcEEEEEEe-------------------------------------------ecCCCCcCC Q lcl|NC_013693. 141 TFVYKKFQRKLYPQFALTKDEALAFKCF-------------------------------------------QNIDPEVEG 177 (250) Q Consensus 141 ~f~fN~~t~rL~i~~~~~~~d~lvie~y-------------------------------------------~~~dP~~~~ 177 (250) +||||++++||++.+|++++|++++|++ +..||+ . T Consensus 160 d~~yN~~~~~l~i~gn~~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~~~~~~~~l~~~~r~~dp~--~ 237 (309) T protein:vir:10 160 DFWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPD--V 237 (309) T ss_pred CceeccccceEEEEEeeecCceEEEEEecchhcccchhhccccccccccCcccccccccccccchhhhcceeccCCc--c Confidence 9999999999999999999999998874 346776 4 Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 178 NEEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 178 ~~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) +|++|||||||||||||+|++|||||+|||||||||||||||++|++||++|+|+|||||+++ .+|+++||| T Consensus 238 ~~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~l-~pP~~~i~G 309 (309) T protein:vir:10 238 KQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLL-DPPFGIFVG 309 (309) T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhc-cCCcccccC Confidence 589999999999999999999999999999999999999999999999999999999999986 789999999 No 7 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=100.00 E-value=1.4e-118 Score=666.64 Aligned_cols=246 Identities=27% Similarity=0.459 Sum_probs=231.6 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccc-cccceEEcCCc-c Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDT-ITKGYIEFPKD-I 78 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~-~~~gyi~lp~~-V 78 (250) ||.++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|+|+ .++|+|++|+. | T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~~k~g~f~~~d~~v 80 (308) T protein:vir:68 1 MSGYNAQNPKELKDVILRRLGAPIVNVELTTDQIYDCISRALELYGEYHFDGLNKGFHVFFVDDEEKYRHGVFDMRGSNV 80 (308) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeChhhhhccceeecCCccc Confidence 999999999999999999999999999999999999999999999999999999999999998655 68899999885 9 Q ss_pred eeeeeeeec--Ccccccccceeecccc-------------cccc--ccccccccccchhHHHHHHHHHHHHHHHhcCCce Q lcl|NC_013693. 79 DDVTEVIPG--PPIESIGNWATPQWQM-------------AQAM--LVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRT 141 (250) Q Consensus 79 ~~V~kI~r~--~s~~~~~g~~~~~~~~-------------~~~~--l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~ 141 (250) ++||+|+|. +|..+++|.|+|+|+. +++| ++++++||. +|++|++++||+++|++||+|.|+ T Consensus 81 ~avT~i~rt~~gs~~t~dg~a~Y~~~~dfv~g~~g~~g~~~~~~~~~~g~n~~g~-~lgy~~~~~~Y~~~l~dl~~p~~~ 159 (308) T protein:vir:68 81 FAVTRIIRTNVGSITSMDGNATYPWFTDFLLGMAGVSGGMGSNCGKFYGPNAFGA-DLGYYSQLVSYMGMLQDMIAPLPD 159 (308) T ss_pred hhhhhhhhccccccccccccccccccCceeeeecccCcccccccchhcccccccc-hhhhHHHHHHHHHHHHHhcccccc Confidence 999999994 7899999999999982 3444 578999997 999999999999999999999999 Q ss_pred eeecCccCcEEEEEeeccCcEEEEEEeec-------------------------------------------CCCCcCCc Q lcl|NC_013693. 142 FVYKKFQRKLYPQFALTKDEALAFKCFQN-------------------------------------------IDPEVEGN 178 (250) Q Consensus 142 f~fN~~t~rL~i~~~~~~~d~lvie~y~~-------------------------------------------~dP~~~~~ 178 (250) ||||+++++|+|.+|++.+|.+++|++.+ +||+ .. T Consensus 160 ~~~n~~~~ql~i~~n~~~~d~~i~e~~~ks~le~~~~v~n~~~y~~~~~rl~~~~~~~~~~~~~~l~~~~~~~~p~--~~ 237 (308) T protein:vir:68 160 FWFNSANEQLKVMGNFRQKDVIIVESYVRSYIETHKMVGNTVGYGQVGPRDSWSISERYDNPDHNLVGRRVGEDPA--TK 237 (308) T ss_pred cccCCcceeEEEeeeeccCceEEEEEeeecccccchhhccceeeeeecccccCccccccccchhhheeeeeccCCC--cc Confidence 99999999999999999999999987644 5676 56 Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 179 EEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 179 ~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) |++|||||||||||||+|++|||||+|||||||||||||||++|++||++|+|||||||+++| +|+++||| T Consensus 238 ~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~-pP~~~i~g 308 (308) T protein:vir:68 238 QGAYNNRWVKDYASALAKELNGQILAKHQGMMLPGGVTVDGVRLIEEARLEKEALREELYLLD-PPAGILVG 308 (308) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcc-CCCceeeC Confidence 899999999999999999999999999999999999999999999999999999999999997 99999999 No 8 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=100.00 E-value=1.4e-118 Score=666.73 Aligned_cols=246 Identities=28% Similarity=0.477 Sum_probs=229.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeecc--ccccceEEcCC-c Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDD--TITKGYIEFPK-D 77 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted--~~~~gyi~lp~-~ 77 (250) ||.++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|++ +.++|||++++ + T Consensus 1 m~~~~p~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~yl~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:71 1 MSGYNPQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEERYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhcccceecCCcc Confidence 99999999999999999999999999999999999999999999999999999999999999875 56799999965 6 Q ss_pred ceeeeeeeec--Ccccccccceeeccc---------c----ccc--cccccccccccchhHHHHHHHHHHHHHHHhcCCc Q lcl|NC_013693. 78 IDDVTEVIPG--PPIESIGNWATPQWQ---------M----AQA--MLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKR 140 (250) Q Consensus 78 V~~V~kI~r~--~s~~~~~g~~~~~~~---------~----~~~--~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~ 140 (250) |++||+|+|. ++..+++|+|+|+|+ + +++ ..++|++||. +|++|++++||+++++++|+|.| T Consensus 81 v~aVt~i~~t~~gs~~t~dg~aty~w~~dfi~g~~gi~g~~~~s~~~~~~pn~fg~-dl~Y~~~l~sy~~m~qd~l~~~p 159 (309) T protein:vir:71 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGA-DLGYFTQLTSYMGMMQDMLSPIP 159 (309) T ss_pred hhhhhhhhcCCcccccccCcccccccccchhhhhhhhhcccccccccccccchhhh-hhHHHHHHHHHHHHHHHHhcccC Confidence 9999999995 788899999999995 1 123 3578899996 99999999999999999999999 Q ss_pred eeeecCccCcEEEEEeeccCcEEEEEEeec-------------------------------------------CCCCcCC Q lcl|NC_013693. 141 TFVYKKFQRKLYPQFALTKDEALAFKCFQN-------------------------------------------IDPEVEG 177 (250) Q Consensus 141 ~f~fN~~t~rL~i~~~~~~~d~lvie~y~~-------------------------------------------~dP~~~~ 177 (250) +||||+++++|++.+|+++++++++|++++ .||+ . T Consensus 160 d~~~N~~~~~l~i~gnf~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~y~~~~~~l~~~~r~~dp~--~ 237 (309) T protein:vir:71 160 DFWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPN--V 237 (309) T ss_pred CcccccccceEEEEEeeeecceEEEEEeeccccccchhhhcchhhccccccccccceehhcccchhhhcceeccCCc--c Confidence 999999999999999999999999986544 5665 4 Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 178 NEEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 178 ~~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) +|++|||||||||||||+|++|||||+|||||||||||||||++|++||++|+|+|||||++++ +|+++||| T Consensus 238 ~~~~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~~~-pP~d~i~g 309 (309) T protein:vir:71 238 KQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLD-PPFGILVG 309 (309) T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcc-CCCcceeC Confidence 4899999999999999999999999999999999999999999999999999999999999987 99999999 No 9 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=100.00 E-value=5.3e-118 Score=663.55 Aligned_cols=247 Identities=25% Similarity=0.404 Sum_probs=232.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccceEEcCCc-ce Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKGYIEFPKD-ID 79 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~gyi~lp~~-V~ 79 (250) || ++|+||+|||||||||||||||+|||||+||+||||||||+|+||||||++|+|++|++||||+++|||++|++ |+ T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~ 79 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVF 79 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchh Confidence 99 77999999999999999999999999999999999999999999999999999999999999999999999995 99 Q ss_pred eeeeeeec--Ccccccccceeecccc------------ccccccccccccccchhHHHHHHHHHHHHHHHhcCCceeeec Q lcl|NC_013693. 80 DVTEVIPG--PPIESIGNWATPQWQM------------AQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTFVYK 145 (250) Q Consensus 80 ~V~kI~r~--~s~~~~~g~~~~~~~~------------~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f~fN 145 (250) +||+|+|. +|..+|+|.++|+|+. +.+-.+++++||. +|++|++++||+.+++++|+|.|+|||| T Consensus 80 avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~-~l~y~t~l~sy~~~m~d~~~pl~d~~yn 158 (307) T protein:vir:10 80 AVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGG-DLGYFTQLMSYRSMMGDLLSPLPDFYYN 158 (307) T ss_pred hhhhhhhhccccccccCcccccccccccceeecCCccceeeeeeccccccc-chhhhhHHHHHHHHHHhhcccccceeec Confidence 99999986 7889999999999983 1233577899995 9999999999999999999999999999 Q ss_pred CccCcEEEEEeeccCcEEEEEEeec---------------------------------------------CCCCcCCccc Q lcl|NC_013693. 146 KFQRKLYPQFALTKDEALAFKCFQN---------------------------------------------IDPEVEGNEE 180 (250) Q Consensus 146 ~~t~rL~i~~~~~~~d~lvie~y~~---------------------------------------------~dP~~~~~~~ 180 (250) +.|++|+|.+||+.||.|++|++++ .||+.+..++ T Consensus 159 ~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ 238 (307) T protein:vir:10 159 SSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGMLKDG 238 (307) T ss_pred CCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCchhhcccccccCcccccccc Confidence 9999999999999999999998632 5677666789 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 181 AWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 181 ~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) +|||||||||||||+|++|||||+|||||||||||||||++|++||++|+|+|||||+++|+ |+|++|| T Consensus 239 ~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~-~ppi~mg 307 (307) T protein:vir:10 239 AYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDA-PPPIIMG 307 (307) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCC-CCccccC Confidence 99999999999999999999999999999999999999999999999999999999999985 5599999 No 10 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=100.00 E-value=5.3e-118 Score=663.55 Aligned_cols=247 Identities=25% Similarity=0.404 Sum_probs=232.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccceEEcCCc-ce Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKGYIEFPKD-ID 79 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~gyi~lp~~-V~ 79 (250) || ++|+||+|||||||||||||||+|||||+||+||||||||+|+||||||++|+|++|++||||+++|||++|++ |+ T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~ite~~~~~g~~d~~d~~v~ 79 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLTEQQAKTGIIDMKGGNVF 79 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhccCCEEecCCcchh Confidence 99 77999999999999999999999999999999999999999999999999999999999999999999999995 99 Q ss_pred eeeeeeec--Ccccccccceeecccc------------ccccccccccccccchhHHHHHHHHHHHHHHHhcCCceeeec Q lcl|NC_013693. 80 DVTEVIPG--PPIESIGNWATPQWQM------------AQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTFVYK 145 (250) Q Consensus 80 ~V~kI~r~--~s~~~~~g~~~~~~~~------------~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f~fN 145 (250) +||+|+|. +|..+|+|.++|+|+. +.+-.+++++||. +|++|++++||+.+++++|+|.|+|||| T Consensus 80 avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~~~~~~~~~n~~g~-~l~y~t~l~sy~~~m~d~~~pl~d~~yn 158 (307) T protein:vir:10 80 AVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIGGQCKWYGPNAFGG-DLGYFTQLMSYRSMMGDLLSPLPDFYYN 158 (307) T ss_pred hhhhhhhhccccccccCcccccccccccceeecCCccceeeeeeccccccc-chhhhhHHHHHHHHHHhhcccccceeec Confidence 99999986 7889999999999983 1233577899995 9999999999999999999999999999 Q ss_pred CccCcEEEEEeeccCcEEEEEEeec---------------------------------------------CCCCcCCccc Q lcl|NC_013693. 146 KFQRKLYPQFALTKDEALAFKCFQN---------------------------------------------IDPEVEGNEE 180 (250) Q Consensus 146 ~~t~rL~i~~~~~~~d~lvie~y~~---------------------------------------------~dP~~~~~~~ 180 (250) +.|++|+|.+||+.||.|++|++++ .||+.+..++ T Consensus 159 ~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~t~~~ 238 (307) T protein:vir:10 159 SSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPNLAGGAIYAGGSNGMLKDG 238 (307) T ss_pred CCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCchhhcccccccCcccccccc Confidence 9999999999999999999998632 5677666789 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 181 AWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 181 ~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) +|||||||||||||+|++|||||+|||||||||||||||++|++||++|+|+|||||+++|+ |+|++|| T Consensus 239 ~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~-~ppi~mg 307 (307) T protein:vir:10 239 AYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDA-PPPIIMG 307 (307) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCC-CCccccC Confidence 99999999999999999999999999999999999999999999999999999999999985 5599999 No 11 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=100.00 E-value=9.3e-118 Score=662.18 Aligned_cols=245 Identities=27% Similarity=0.434 Sum_probs=227.7 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeecc---ccccceEEcCC- Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDD---TITKGYIEFPK- 76 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted---~~~~gyi~lp~- 76 (250) |+ ++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|+| +.++|||++++ T Consensus 1 MA-~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~ALely~EyHydG~~k~y~~~~it~dd~~~~~~g~~d~~~~ 79 (311) T protein:vir:10 1 MA-SESYNPKQLKDAILRRLGAPITNIEVTTDQVYDCIQRALELYGEYHYNGYNKGYQAFYIGHDDEEKFRNGVFDLKGR 79 (311) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEecchhhhhccCCceecCCc Confidence 44 48899999999999999999999999999999999999999999999999999999999995 45899999998 Q ss_pred cceeeeeeeec--Ccccccccceeecccc--------------ccccccccccccccchhHHHHHHHHHHHHHHHhcCCc Q lcl|NC_013693. 77 DIDDVTEVIPG--PPIESIGNWATPQWQM--------------AQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKR 140 (250) Q Consensus 77 ~V~~V~kI~r~--~s~~~~~g~~~~~~~~--------------~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~ 140 (250) +|++||+|+|+ +|..+++|+|+|+|+. +++..+++++||. +|++|++++||+++|+++|+|.| T Consensus 80 ~v~avt~i~~t~~gs~~s~dg~atY~w~~d~v~G~~~v~g~~~s~~~~~g~n~fg~-~lgyf~~l~~Y~~~l~dl~~p~~ 158 (311) T protein:vir:10 80 NIFAVTQILRTNVGSLTSMDGQATYPWFTDFVLGLAGINGGLGSSCNSFGPNAFGA-DLGYFTQLMQYRSMMQDLLVPLP 158 (311) T ss_pred chhHHHHhhccccccccCCCCcccccccCchhhhhhhhhccccccccccccccccc-hHHHHHHHHHHHHHHHHhhcccc Confidence 59999999995 7899999999999952 2344577899995 99999999999999999999999 Q ss_pred eeeecCccCcEEEEEeeccCcEEEEEEeec----------------------------------------------CCCC Q lcl|NC_013693. 141 TFVYKKFQRKLYPQFALTKDEALAFKCFQN----------------------------------------------IDPE 174 (250) Q Consensus 141 ~f~fN~~t~rL~i~~~~~~~d~lvie~y~~----------------------------------------------~dP~ 174 (250) +||||++|++|++.+||+.||+|++|||++ .||+ T Consensus 159 d~~yn~~t~~l~i~gnf~~g~~i~~e~~~k~~~~v~~~v~~~~~~~~~~~~~~~d~~~~~~~~~n~~~~l~~~rag~dp~ 238 (311) T protein:vir:10 159 DYWYNDATEQLKVMGNFVKGDFIVIEVYTRSFNGVDSMVGNTAGYGYASGGCDENEWSPGAIWDNPARRISGMRAGEDLG 238 (311) T ss_pred ccccccccceEEEeeccccccEEEEEEeccccccchhhhhhhhhhhcccccccccccccchhhcccccccccceeecCcc Confidence 999999999999999999999999999844 2565 Q ss_pred cCCccccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 175 VEGNEEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 175 ~~~~~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) + +|++|||||||||||||+|++|||||+|||||||||||||||++|++||++|+|||||||++ +++|++++|| T Consensus 239 ~--~~~~YNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~-~~~Pp~~liG 311 (311) T protein:vir:10 239 L--QDGAYNNRWVKDYATALVKEVNGNILAKHQGMQLAGGTTVDGIRLIEEARLEKERLREELDL-LDPPTPILIG 311 (311) T ss_pred h--hhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhh-cCCCchhccC Confidence 3 48999999999999999999999999999999999999999999999999999999999987 6899999999 No 12 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=100.00 E-value=5.7e-117 Score=657.88 Aligned_cols=247 Identities=26% Similarity=0.444 Sum_probs=230.0 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccceEEcCCc-ce Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKGYIEFPKD-ID 79 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~gyi~lp~~-V~ 79 (250) || ++|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|||++++|||++|++ |+ T Consensus 1 ma-~~~~s~~eLkdyiLRrLGAPvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~ite~~~k~g~~d~~~~~v~ 79 (314) T protein:vir:10 1 MS-YTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLTEEQAKTGVISFAGGNVF 79 (314) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCCEEeeCCccce Confidence 87 66999999999999999999999999999999999999999999999999999999999999999999999985 99 Q ss_pred eeeeeeec--Ccccccccceeecccc------------ccccccccccccccchhHHHHHHHHHHHHHHHhcCCceeeec Q lcl|NC_013693. 80 DVTEVIPG--PPIESIGNWATPQWQM------------AQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTFVYK 145 (250) Q Consensus 80 ~V~kI~r~--~s~~~~~g~~~~~~~~------------~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f~fN 145 (250) +||+|+|+ ++..+++|.++|+|+. +.+..+++++||. ++++|++++||+.+|+++|+|.|+|||| T Consensus 80 avt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~~~~~~~~pn~fg~-~~~yf~~~m~y~~ml~d~~~pl~d~~~n 158 (314) T protein:vir:10 80 AVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGGQCRWYGPNAFGA-DLGYFTQLMSYRDMMGDMLSPLPDFFFN 158 (314) T ss_pred ehhhhhhcccccccccCccccccccCceeeeecccccccccceeccccccc-hhHHHHHHHHHHHHHHhhhccccccccc Confidence 99999996 6688899999999983 1233567899995 9999999999999999999999999999 Q ss_pred CccCcEEEEEeeccCcEEEEEEee----------------------------------------cCCCC----------- Q lcl|NC_013693. 146 KFQRKLYPQFALTKDEALAFKCFQ----------------------------------------NIDPE----------- 174 (250) Q Consensus 146 ~~t~rL~i~~~~~~~d~lvie~y~----------------------------------------~~dP~----------- 174 (250) +.|++|+|.++++.+|.|++|+++ .+||+ T Consensus 159 ~~~~~l~i~~nf~~~Dll~~e~~~k~~~~~d~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~nP~~~~~~~~~g~~ 238 (314) T protein:vir:10 159 STTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGVDSTLSGTSAGYGFAMSDDDSVPSVAQKYANPNMSHGQIYAGQS 238 (314) T ss_pred CCcceEEEeecccCCcEEEEEEEeccccccchhccccccccceeeeeceecccccccchhhhhhhcCcccccceeeeccc Confidence 999999999999999999999864 35775 Q ss_pred -cCCccccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 175 -VEGNEEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 175 -~~~~~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) .+.+|++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|+|+|||||+++|+ |+|++|| T Consensus 239 ~~~~~~~~yNnrWvKdYaTALvK~~wGqnL~K~qG~qLPGGVTldG~~l~eea~~E~e~Lreel~~~~~-~pp~~mg 314 (314) T protein:vir:10 239 NGMSKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDG-PPPIIMG 314 (314) T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhCCcccCCceeecHHHHHHHHHHHHHHHHHHHhhccC-CCccccC Confidence 23568999999999999999999999999999999999999999999999999999999999999985 6699999 No 13 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=100.00 E-value=2.8e-116 Score=654.13 Aligned_cols=245 Identities=23% Similarity=0.380 Sum_probs=226.8 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccceEEcCCcceeee Q lcl|NC_013693. 3 VNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKGYIEFPKDIDDVT 82 (250) Q Consensus 3 ~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~gyi~lp~~V~~V~ 82 (250) |++ +||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++||||++++|+..|+.|++|| T Consensus 1 m~t-~s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~EyHydG~~k~y~~~~i~~d~~~~~~~~~~~~v~aVT 79 (307) T protein:vir:98 1 MIT-NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNPRNVFDLSKEHIFAVT 79 (307) T ss_pred CCc-CCHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhhhcccccceeEEEEecccccccceecCCchHhHHH Confidence 666 9999999999999999999999999999999999999999999999999999999999999999988888999999 Q ss_pred eeeec--Ccccccccceeeccccc--------------cccccccccccccchhHHHHHHHHHHHHHHHhcCCceeeecC Q lcl|NC_013693. 83 EVIPG--PPIESIGNWATPQWQMA--------------QAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTFVYKK 146 (250) Q Consensus 83 kI~r~--~s~~~~~g~~~~~~~~~--------------~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f~fN~ 146 (250) +|+|+ +|+.+|+|+|+|+|+.. .+..+++++||. +|++|++++||+++++++|+|.|+||||+ T Consensus 80 ~iirt~~g~~~s~dg~aty~w~~d~~~g~~~~~~g~~~~s~~~g~n~~g~-~l~yf~q~~~Y~~~l~dl~~p~~dy~yn~ 158 (307) T protein:vir:98 80 KVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLGGRCASSVYGMNAYGA-DLGYFTQMMSYQRSMQELLAPLPDYWYND 158 (307) T ss_pred HHhhcCccceecccccccccccCcceeecCCcccccccccceecCccccc-hHHHHHHHHHHHHHHHHhhccccceeecC Confidence 99997 88999999999999731 124567888996 99999999999999999999999999999 Q ss_pred ccCcEEEEEeeccCcEEEEEEeec---------------------------------------------CCC-CcCCccc Q lcl|NC_013693. 147 FQRKLYPQFALTKDEALAFKCFQN---------------------------------------------IDP-EVEGNEE 180 (250) Q Consensus 147 ~t~rL~i~~~~~~~d~lvie~y~~---------------------------------------------~dP-~~~~~~~ 180 (250) ++++|++.+|+++||.|++||+++ .+| +.++.++ T Consensus 159 ~~~~l~~~gn~~~~d~i~~e~~~ks~ld~~~~i~~~~~y~~~~~~~~~d~~~~d~~~n~y~~~~~~yra~~~~~~~~~t~ 238 (307) T protein:vir:98 159 DTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTVTGGTS 238 (307) T ss_pred cccceeeeeccccCceEEEEEeecccccchHHhcccccceeecccccccccchhhccchhhhhhcceeecCCCCcccccc Confidence 999999999999999999999844 112 2224477 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCcccc Q lcl|NC_013693. 181 AWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYM 249 (250) Q Consensus 181 ~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~ 249 (250) +|||||||||||||+|++|||||+|||||||||||||||++|++||++|+|+|||||+++|++|+.+|| T Consensus 239 aYNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~~ppi~mi 307 (307) T protein:vir:98 239 AYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 999999999999999999999999999999999999999999999999999999999999988877888 No 14 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=100.00 E-value=3.2e-116 Score=653.74 Aligned_cols=245 Identities=28% Similarity=0.482 Sum_probs=235.4 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeecccc------------- Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTI------------- 67 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~------------- 67 (250) ||.|+|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|++++ T Consensus 1 Ms~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~~~g~~~t~~g~~~ 80 (268) T protein:vir:10 1 MSATRPASKTELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIKTAAQSTTQQGSTN 80 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHhhhhhhcccCcccc Confidence 9999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ---ccceEEcCCcceeeeeeeec--CcccccccceeeccccccccccccccccccchhHHHHHHHHHHHHHHHhc--CCc Q lcl|NC_013693. 68 ---TKGYIEFPKDIDDVTEVIPG--PPIESIGNWATPQWQMAQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLN--VKR 140 (250) Q Consensus 68 ---~~gyi~lp~~V~~V~kI~r~--~s~~~~~g~~~~~~~~~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~--~~~ 140 (250) .++||.+||+|++|++||+. .+...++|++++.|++ +||+.++++++.++.|+++++|+++++++++ ..+ T Consensus 81 ~~~~~~fi~~pp~v~gv~~vf~~~~~~~~~~~n~~~~~~q~---~lnd~~~~~~g~il~y~~~~~~l~~~~~~~~s~~~~ 157 (268) T protein:vir:10 81 WYENNNYVSLPPGVLGVNHVYTNIGASSVVPGNIFNIKYQI---FLNDIYAMTHGQILHYFMTSQYLETLDWVTNSQANR 157 (268) T ss_pred ccccccceecCCceeehhhhhhcccccccccccccccchhh---hhcchhhhhHHhhhhhhhccceeehhhhhhcccCcc Confidence 46799999999999999984 5677788899999999 9999999999999999999999999999987 569 Q ss_pred eeeecCccCcEEEEEe---eccCcEEEEEEeecCCCCcCCccccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceee Q lcl|NC_013693. 141 TFVYKKFQRKLYPQFA---LTKDEALAFKCFQNIDPEVEGNEEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIEL 217 (250) Q Consensus 141 ~f~fN~~t~rL~i~~~---~~~~d~lvie~y~~~dP~~~~~~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtl 217 (250) +++||++++|||++++ ...|+++++||++++||+ +++++|||||||||||||+|++|||||+||||||||||||| T Consensus 158 ~~~~~~~~~rly~d~d~~~~~~~~~~~i~~~~~~dP~--~~~~~YNn~WvKdYatAL~K~~wGq~L~K~qG~qLPGGvTl 235 (268) T protein:vir:10 158 RVKFNEHQARLYLDFDWDTLQAGDFIMVDLTMRQDPD--EYTGMYNDAWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTL 235 (268) T ss_pred ceEEEeeeceeEEeeccCCcccchhhhhHhhcccCCc--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceee Confidence 9999999999999996 567899999999999998 56899999999999999999999999999999999999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 218 DGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 218 nG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) ||+||++||++|+|+|||||+++|+.|+++||| T Consensus 236 nG~~i~eeA~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 236 NGRQILEDASQFKKDLEENIRKEYELPPMDLIG 268 (268) T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCCCcceecC Confidence 999999999999999999999999999999999 No 15 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=100.00 E-value=3.9e-115 Score=647.81 Aligned_cols=245 Identities=27% Similarity=0.475 Sum_probs=237.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccccc---------- Q lcl|NC_013693. 1 MAVNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTITKG---------- 70 (250) Q Consensus 1 m~~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~~g---------- 70 (250) ||.|+|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|+++.+++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~~rt~~~~~t~~~t~~ 80 (268) T protein:vir:10 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIKTQAKGFTQEGSTP 80 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhcccccccccccc Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 Q ss_pred ------eEEcCCcceeeeeeee--cCcccccccceeeccccccccccccccccccchhHHHHHHHHHHHHHHHhcC--Cc Q lcl|NC_013693. 71 ------YIEFPKDIDDVTEVIP--GPPIESIGNWATPQWQMAQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNV--KR 140 (250) Q Consensus 71 ------yi~lp~~V~~V~kI~r--~~s~~~~~g~~~~~~~~~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~--~~ 140 (250) ||.+||+|++|++||+ +.+...++|+|++.|++ ++|+.++|++++|+.|++++||+++++.+++. .+ T Consensus 81 ~~~~~nyi~~p~~~~Gv~~vf~~~~~~~~~~~nm~~~~~q~---~lnd~~~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~ 157 (268) T protein:vir:10 81 WYGQDNYVSTPPGTLGINHVYTNIGASSIVPGNIFNIKYQI---FLNDIYSMTHGQILHYFLTSQYLETLDFVTNSQANR 157 (268) T ss_pred ccCCCcceecCccccchhhhhccccccccccchhhcccchh---hccccccccceeEEEEEEeeeeecchhhhhccCCCc Confidence 9999999999999998 46788889999999999 99999999999999999999999999999984 68 Q ss_pred eeeecCccCcEEEEEe---eccCcEEEEEEeecCCCCcCCccccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceee Q lcl|NC_013693. 141 TFVYKKFQRKLYPQFA---LTKDEALAFKCFQNIDPEVEGNEEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIEL 217 (250) Q Consensus 141 ~f~fN~~t~rL~i~~~---~~~~d~lvie~y~~~dP~~~~~~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtl 217 (250) +|+||++++||+++.+ ...|++++++||+..||+ .++++|||||||||||||+|++|||||+||||||||||||| T Consensus 158 ~~~~~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~dp~--~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTv 235 (268) T protein:vir:10 158 RVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDPT--TFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTL 235 (268) T ss_pred ceeeecccCceeeeeeccCcccchhhhhhhhhccCCc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceee Confidence 9999999999999997 778999999999999998 56899999999999999999999999999999999999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 218 DGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 218 nG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) ||++|++||++|+|+|||||+++|++|+++||| T Consensus 236 nG~~i~eea~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 236 NGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Confidence 999999999999999999999999999999999 No 16 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=100.00 E-value=5.1e-113 Score=636.22 Aligned_cols=243 Identities=28% Similarity=0.526 Sum_probs=227.0 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeecccc--------------- Q lcl|NC_013693. 3 VNSIRDRKGFMNYILKKLGAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTI--------------- 67 (250) Q Consensus 3 ~~~~~s~~~Lkd~ilr~LGaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~--------------- 67 (250) ||+|+||+|||||||||||||||||||||+||+||||||||+|+||||||++|+|++|++|+||+ T Consensus 1 ma~p~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~~~~~~~~~~~~s~ 80 (276) T protein:vir:10 1 MAKPSSKQELIDYCKRQLGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTRFTSSDQLTTAPNN 80 (276) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhhhhhhhhcccccce Confidence 99999999999999999999999999999999999999999999999999999999999999999 Q ss_pred -----ccceEEcCCcceeeeeeeecCcccccccceeecccccccccccccc--------ccccchhHHHHHHHHHHHHHH Q lcl|NC_013693. 68 -----TKGYIEFPKDIDDVTEVIPGPPIESIGNWATPQWQMAQAMLVPKSA--------LVSIRLIDYVSMQQRLSDITS 134 (250) Q Consensus 68 -----~~gyi~lp~~V~~V~kI~r~~s~~~~~g~~~~~~~~~~~~l~~~~~--------~g~~~L~~y~~~~qy~~~l~~ 134 (250) +++|+.+||.|.+|++|+.++|...++|.|.+++|+ ||++.+. +|++++++|.+++||+++++. T Consensus 81 ~~~~g~~~Y~~~pd~v~gi~~v~~g~s~~~g~n~f~~~~q~---fl~d~~~~~~~ql~~~g~~~~~dy~~ve~~~~~id~ 157 (276) T protein:vir:10 81 DDWENRNNYIQVPDAVIGISKVFGVSSNFLRNNLFGLSNQY---YLMDLFSFSTGSAFSFGNFDLTNYYMIKQHFETIDM 157 (276) T ss_pred eeeeccCcceecCcchhhhhhhcccCccccCCccccccHHH---HHHHHhcccccceeeccceeeeeEEEEEEEecccce Confidence 567999999999999999888877778877766665 4444433 589999999999999999999 Q ss_pred HhcCC--ceeeecCccCcEEEEE---eeccCcEEEEEEeecCCCCcCCccccccchHHHHHHHHHHHHHHHHHHHhhcCc Q lcl|NC_013693. 135 VLNVK--RTFVYKKFQRKLYPQF---ALTKDEALAFKCFQNIDPEVEGNEEAWNDMWLKAYATALVKRRWAEVLKKARGI 209 (250) Q Consensus 135 ~l~~~--~~f~fN~~t~rL~i~~---~~~~~d~lvie~y~~~dP~~~~~~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~ 209 (250) +++.. ..|.||+++++|+++. ++..|.+++++||+.+||+ ++|++|||||||||||||+|++|||||+||||| T Consensus 158 ~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~dP~--~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~ 235 (276) T protein:vir:10 158 IINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQYLLIDCYRYLNPD--DFTQVYDDSFVKRYATALLKRQWGQNLIKYNSV 235 (276) T ss_pred eecCCceeEEeeeccCCccccccccccccCCHHHHhhcccccCCc--ccccccchhHHHHHHHHHHHHHHHHHHHHhCCc Confidence 99876 5778899999999997 5778999999999999998 578999999999999999999999999999999 Q ss_pred cCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Q lcl|NC_013693. 210 RLPGGIELDGDTMFSEAEAEIERLEEELRTGQQYPIDFYMG 250 (250) Q Consensus 210 qLPGGvtlnG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~i~G 250 (250) ||||||||||++|++||++|+|+|||||+++|++|+++||| T Consensus 236 qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~miG 276 (276) T protein:vir:10 236 QLPGGITLNGRQIWEDGNNEVRELESRMMTDYSLPPMDMIG 276 (276) T ss_pred cCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCceeecC Confidence 99999999999999999999999999999999999999999 No 17 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=97.96 E-value=2.4e-08 Score=62.38 Aligned_cols=200 Identities=12% Similarity=0.038 Sum_probs=102.2 Q ss_pred CceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccc-------------------cceEEcCCcceeee Q lcl|NC_013693. 22 APVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTIT-------------------KGYIEFPKDIDDVT 82 (250) Q Consensus 22 aPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~-------------------~gyi~lp~~V~~V~ 82 (250) --+-+.. +..| ++|.+|.--+ .-=+.+.+|++|+. +.|+ +++|| T Consensus 1 m~~~~~~-s~~e---LkdyiLRrLG--------aPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~-----~f~vT 63 (268) T protein:vir:10 1 MSATRPA-SKTE---LKDYALRRLG--------FPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFM-----RIEVT 63 (268) T ss_pred CCCCCCC-CHHH---HHHHHHHhcC--------CceEEEecCHHHHHHHHHHHHHHhhhhcccccccceE-----EEEec Confidence 0000000 1122 2222222111 12467778888883 2455 78999 Q ss_pred eeeec-CcccccccceeeccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCceeeecCcc--CcEEEEEeecc Q lcl|NC_013693. 83 EVIPG-PPIESIGNWATPQWQMAQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTFVYKKFQ--RKLYPQFALTK 159 (250) Q Consensus 83 kI~r~-~s~~~~~g~~~~~~~~~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f~fN~~t--~rL~i~~~~~~ 159 (250) ++.|. +.+.+++++++++|+ ++...++++++|. +..|.+++||+.++++||+|.++||||+.+ ..+.|...+.. T Consensus 64 ~~~rt~~~~~t~~~t~~~~~~-~nyi~~p~~~~Gv--~~vf~~~~~~~~~~~nm~~~~~q~~lnd~~~~~~~~i~~~~~~ 140 (268) T protein:vir:10 64 EAIKTQAKGFTQEGSTPWYGQ-DNYVSTPPGTLGI--NHVYTNIGASSIVPGNIFNIKYQIFLNDIYSMTHGQILHYFLT 140 (268) T ss_pred hHHhhccccccccccccccCC-CcceecCccccch--hhhhccccccccccchhhcccchhhccccccccceeEEEEEEe Confidence 99985 333456555444443 3445678999996 688999999999999999999999999953 33333333333 Q ss_pred CcEEE-EEEeec--CCCCcCC--------ccccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCceeecHHHHHHHHHH Q lcl|NC_013693. 160 DEALA-FKCFQN--IDPEVEG--------NEEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGIELDGDTMFSEAEA 228 (250) Q Consensus 160 ~d~lv-ie~y~~--~dP~~~~--------~~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGvtlnG~~i~~eA~~ 228 (250) .+.++ +|+.-+ .|+.... -...|+++-.-+|- ++...-|.+-.-|+| --|-+=+-+=|.. T Consensus 141 ~~~l~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~--l~~~~~~~dp~~~~~-------~YNn~WvKdYaTA 211 (268) T protein:vir:10 141 SQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYI--MVDMTMRQDPTTFTD-------MFNDNWLKDYVEA 211 (268) T ss_pred eeeecchhhhhccCCCcceeeecccCceeeeeeccCcccchhh--hhhhhhccCCcccch-------hhhhhHHHHHHHH Confidence 33333 333222 1221000 01112221111111 222222222222222 2455666666777 Q ss_pred HHHHHHHHHHhhcC---CCCccccC Q lcl|NC_013693. 229 EIERLEEELRTGQQ---YPIDFYMG 250 (250) Q Consensus 229 Eie~L~eeL~~~~~---~Pl~~i~G 250 (250) -+++.--+-+.+++ .|=|+=+= T Consensus 212 L~K~~wGq~L~K~qG~qLPGGvTvn 236 (268) T protein:vir:10 212 LFQQQWGRNLSKYDGIQMLGGVTLN 236 (268) T ss_pred HHHHHHHHHHHHhcCccCCCceeec Confidence 77777766666663 24222221 No 18 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=97.38 E-value=3.1e-07 Score=56.26 Aligned_cols=228 Identities=14% Similarity=0.027 Sum_probs=127.1 Q ss_pred CCCCCC----C-CHHHHHHHHHHhc-----------CCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccc-eeEEEEe- Q lcl|NC_013693. 1 MAVNSI----R-DRKGFMNYILKKL-----------GAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQD-AFFVHVV- 62 (250) Q Consensus 1 m~~~~~----~-s~~~Lkd~ilr~L-----------GaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~-~~l~~~~- 62 (250) +.+--| + +-+++-|-|-|-| ----+.+.||++|+..= -+++..+ .+..-++ T Consensus 18 RrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g-----------~~d~~d~~v~avt~i~ 86 (310) T protein:vir:65 18 RRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHG-----------VFDLSDSGVFAVTKII 86 (310) T ss_pred HhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCC-----------eeeeCCcceeeeehhh Confidence 222222 1 3444444444433 23457788999986321 0222222 2222221 Q ss_pred -------eccccccceEEcCCcceeeeeeeec--Ccc-c-----ccccceeeccc------ccccccccc---------- Q lcl|NC_013693. 63 -------DDDTITKGYIEFPKDIDDVTEVIPG--PPI-E-----SIGNWATPQWQ------MAQAMLVPK---------- 111 (250) Q Consensus 63 -------ted~~~~gyi~lp~~V~~V~kI~r~--~s~-~-----~~~g~~~~~~~------~~~~~l~~~---------- 111 (250) .-.+.+.+|+.+||.|.+|++|..+ .|+ . .+|+...+-|+ +++.++++. T Consensus 87 ~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~yn~~~~ 166 (310) T protein:vir:65 87 RTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYWYNSANG 166 (310) T ss_pred hccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccccCCccc Confidence 1122356799999999999999964 111 2 22222333332 445566665 Q ss_pred -----ccccccchhHHHH-HHHHHHHHHHHhcCCceeeecCccCcEEEEEe---eccCcEEEEEEeecCCCCcCCc-cc- Q lcl|NC_013693. 112 -----SALVSIRLIDYVS-MQQRLSDITSVLNVKRTFVYKKFQRKLYPQFA---LTKDEALAFKCFQNIDPEVEGN-EE- 180 (250) Q Consensus 112 -----~~~g~~~L~~y~~-~~qy~~~l~~~l~~~~~f~fN~~t~rL~i~~~---~~~~d~lvie~y~~~dP~~~~~-~~- 180 (250) +.|-.++|+-+.. ++||+++.+++++....++|++++++++++.+ ...+.+.+++|++..+|..++- .. T Consensus 167 ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YNnr 246 (310) T protein:vir:65 167 QLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISENKQGAYNNR 246 (310) T ss_pred eeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCccccccchh Confidence 2344446665554 89999999999999999999999999999875 4567899999999988865543 22 Q ss_pred ---cccchHHHH-HHHHHHHHHHHHHHHhhcCccCCCceee-cHHHHHHHHHHHHHHHHHHHHhhcCCCCcc Q lcl|NC_013693. 181 ---AWNDMWLKA-YATALVKRRWAEVLKKARGIRLPGGIEL-DGDTMFSEAEAEIERLEEELRTGQQYPIDF 247 (250) Q Consensus 181 ---~YNd~WvKd-yaTAL~K~~wGqnL~Kfqg~qLPGGvtl-nG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~ 247 (250) -|--.-+|+ |.-.|+|-+ |.-| =-|+.+=|=--+ ++++=++.-++|++ -++--. +=+.+ T Consensus 247 WvKdYaTAL~K~~wGqnL~K~q-G~qL--PGGVTlnG~~i~eeA~~E~e~LreEl~---~~~pP~--~i~~~ 310 (310) T protein:vir:65 247 WVKDMATAFTKEVWGSIMAKHQ-GLQL--PGGVTVDGIRIIEEARADIEKLRQELE---LLDPPF--GILMI 310 (310) T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CccC--CCceeecHHHHHHHHHHHHHHHHHHHH---hhCCCC--CeeeC Confidence 244455554 455666654 2222 134444332211 33444455555552 222222 11222 No 19 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=97.38 E-value=3.1e-07 Score=56.26 Aligned_cols=228 Identities=14% Similarity=0.027 Sum_probs=127.1 Q ss_pred CCCCCC----C-CHHHHHHHHHHhc-----------CCceEEEEeCHHHHHHHHHHHHHHHHHhhhccccc-eeEEEEe- Q lcl|NC_013693. 1 MAVNSI----R-DRKGFMNYILKKL-----------GAPVIQINLDPSQVSDAVDDALQKFWEYHRDGSQD-AFFVHVV- 62 (250) Q Consensus 1 m~~~~~----~-s~~~Lkd~ilr~L-----------GaPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~-~~l~~~~- 62 (250) +.+--| + +-+++-|-|-|-| ----+.+.||++|+..= -+++..+ .+..-++ T Consensus 18 RrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~~~~g-----------~~d~~d~~v~avt~i~ 86 (310) T protein:vir:81 18 RRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQAQHG-----------VFDLSDSGVFAVTKII 86 (310) T ss_pred HhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhhcCC-----------eeeeCCcceeeeehhh Confidence 222222 1 3444444444433 23457788999986321 0222222 2222221 Q ss_pred -------eccccccceEEcCCcceeeeeeeec--Ccc-c-----ccccceeeccc------ccccccccc---------- Q lcl|NC_013693. 63 -------DDDTITKGYIEFPKDIDDVTEVIPG--PPI-E-----SIGNWATPQWQ------MAQAMLVPK---------- 111 (250) Q Consensus 63 -------ted~~~~gyi~lp~~V~~V~kI~r~--~s~-~-----~~~g~~~~~~~------~~~~~l~~~---------- 111 (250) .-.+.+.+|+.+||.|.+|++|..+ .|+ . .+|+...+-|+ +++.++++. T Consensus 87 ~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpdy~yn~~~~ 166 (310) T protein:vir:81 87 RTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPDYWYNSANG 166 (310) T ss_pred hccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccccccCCccc Confidence 1122356799999999999999964 111 2 22222333332 445566665 Q ss_pred -----ccccccchhHHHH-HHHHHHHHHHHhcCCceeeecCccCcEEEEEe---eccCcEEEEEEeecCCCCcCCc-cc- Q lcl|NC_013693. 112 -----SALVSIRLIDYVS-MQQRLSDITSVLNVKRTFVYKKFQRKLYPQFA---LTKDEALAFKCFQNIDPEVEGN-EE- 180 (250) Q Consensus 112 -----~~~g~~~L~~y~~-~~qy~~~l~~~l~~~~~f~fN~~t~rL~i~~~---~~~~d~lvie~y~~~dP~~~~~-~~- 180 (250) +.|-.++|+-+.. ++||+++.+++++....++|++++++++++.+ ...+.+.+++|++..+|..++- .. T Consensus 167 ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YNnr 246 (310) T protein:vir:81 167 QLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISENKQGAYNNR 246 (310) T ss_pred eeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCccccccchh Confidence 2344446665554 89999999999999999999999999999875 4567899999999988865543 22 Q ss_pred ---cccchHHHH-HHHHHHHHHHHHHHHhhcCccCCCceee-cHHHHHHHHHHHHHHHHHHHHhhcCCCCcc Q lcl|NC_013693. 181 ---AWNDMWLKA-YATALVKRRWAEVLKKARGIRLPGGIEL-DGDTMFSEAEAEIERLEEELRTGQQYPIDF 247 (250) Q Consensus 181 ---~YNd~WvKd-yaTAL~K~~wGqnL~Kfqg~qLPGGvtl-nG~~i~~eA~~Eie~L~eeL~~~~~~Pl~~ 247 (250) -|--.-+|+ |.-.|+|-+ |.-| =-|+.+=|=--+ ++++=++.-++|++ -++--. +=+.+ T Consensus 247 WvKdYaTAL~K~~wGqnL~K~q-G~qL--PGGVTlnG~~i~eeA~~E~e~LreEl~---~~~pP~--~i~~~ 310 (310) T protein:vir:81 247 WVKDMATAFTKEVWGSIMAKHQ-GLQL--PGGVTVDGIRIIEEARADIEKLRQELE---LLDPPF--GILMI 310 (310) T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CccC--CCceeecHHHHHHHHHHHHHHHHHHHH---hhCCCC--CeeeC Confidence 244455554 455666654 2222 134444332211 33444455555552 222222 11222 No 20 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=97.09 E-value=2.6e-05 Score=45.72 Aligned_cols=182 Identities=11% Similarity=0.022 Sum_probs=108.8 Q ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccc-------------------cceEEcC---Ccc-ee Q lcl|NC_013693. 24 VIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTIT-------------------KGYIEFP---KDI-DD 80 (250) Q Consensus 24 vi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~-------------------~gyi~lp---~~V-~~ 80 (250) --.++ +..|+-|.|=|=| + .-=+.+.+|++|+. +.|+.+- +++ -+ T Consensus 1 ma~p~-s~~eLkdyiLRrL---G--------aPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~~ 68 (276) T protein:vir:10 1 MAKPS-SKQELIDYCKRQL---G--------APVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTRF 68 (276) T ss_pred CCCCC-CHHHHHHHHHHhc---C--------CceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhhh Confidence 11112 4455544443322 1 12567888998883 3455542 233 45 Q ss_pred eeeeeec--Ccccccccceeecccc-----------ccccccccccccccchhHHHHHHHHHHHHHHHhcCCceeeecCc Q lcl|NC_013693. 81 VTEVIPG--PPIESIGNWATPQWQM-----------AQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTFVYKKF 147 (250) Q Consensus 81 V~kI~r~--~s~~~~~g~~~~~~~~-----------~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f~fN~~ 147 (250) ++.++++ +|..+|+|.++|+|+. +.+...++++|++ ++.+| ++++ ||.. T Consensus 69 ~~~~~~~~~~s~~~~~g~~~Y~~~pd~v~gi~~v~~g~s~~~g~n~f~~-~~q~f--l~d~---------------~~~~ 130 (276) T protein:vir:10 69 TSSDQLTTAPNNDDWENRNNYIQVPDAVIGISKVFGVSSNFLRNNLFGL-SNQYY--LMDL---------------FSFS 130 (276) T ss_pred hhhhhcccccceeeeeccCcceecCcchhhhhhhcccCccccCCccccc-cHHHH--HHHH---------------hccc Confidence 6677764 8889999999999973 2344566788887 77776 2222 8999 Q ss_pred cCcEEEEEeeccCcEEEEEEeec-CCCC--------------------cCCccccccchHHHHHHHHHHHHHHHHHHHhh Q lcl|NC_013693. 148 QRKLYPQFALTKDEALAFKCFQN-IDPE--------------------VEGNEEAWNDMWLKAYATALVKRRWAEVLKKA 206 (250) Q Consensus 148 t~rL~i~~~~~~~d~lvie~y~~-~dP~--------------------~~~~~~~YNd~WvKdyaTAL~K~~wGqnL~Kf 206 (250) +++|++.++++.+|++++|+|-. +|.. .++.+++|+|+|+- +..+ T Consensus 131 ~~ql~~~g~~~~~dy~~ve~~~~~id~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~ 196 (276) T protein:vir:10 131 TGSAFSFGNFDLTNYYMIKQHFETIDMIINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQYLL--------------IDCY 196 (276) T ss_pred ccceeeccceeeeeEEEEEEEecccceeecCCceeEEeeeccCCccccccccccccCCHHHH--------------hhcc Confidence 99999999999999999999853 1110 11335667777642 2333 Q ss_pred cCccCCCce--eecHHHHHHHHHHHHHHHHHHHHhhcC---CCCccccC Q lcl|NC_013693. 207 RGIRLPGGI--ELDGDTMFSEAEAEIERLEEELRTGQQ---YPIDFYMG 250 (250) Q Consensus 207 qg~qLPGGv--tlnG~~i~~eA~~Eie~L~eeL~~~~~---~Pl~~i~G 250 (250) ++. =|-+. --|-+=+-+=|..-+++.--+-+.+++ .|=|+=+= T Consensus 197 r~~-dP~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvn 244 (276) T protein:vir:10 197 RYL-NPDDFTQVYDDSFVKRYATALLKRQWGQNLIKYNSVQLPGGITLN 244 (276) T ss_pred ccc-CCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeeC Confidence 321 23332 245556666677777777666666653 23222221 No 21 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=94.81 E-value=3.9e-05 Score=44.77 Aligned_cols=198 Identities=10% Similarity=0.028 Sum_probs=112.6 Q ss_pred CceEEEEeCHHHHHHHHHHHHHHHHHhhhccccceeEEEEeeccccc-------------------cceEEcCCcceeee Q lcl|NC_013693. 22 APVIQINLDPSQVSDAVDDALQKFWEYHRDGSQDAFFVHVVDDDTIT-------------------KGYIEFPKDIDDVT 82 (250) Q Consensus 22 aPvi~ievtd~Qi~d~Id~Al~~f~eyh~dG~~~~~l~~~~ted~~~-------------------~gyi~lp~~V~~V~ 82 (250) --+-++ -+..|+ +|.+|.--+ .-=+.+.+|++|+. +.|+. +.|+ T Consensus 1 Ms~~~~-~s~~eL---kdyiLRrLG--------aPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~-----~~it 63 (268) T protein:vir:10 1 MSATRP-ASKTEL---KNYALRRLG--------YPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMK-----IEVT 63 (268) T ss_pred CCCCCC-CCHHHH---HHHHHHhcC--------CceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEE-----EEec Confidence 000000 112222 222222111 12467778888883 23442 2222 Q ss_pred eee-ecCcccccccceeeccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCceeeecCccCcE--EEEEeecc Q lcl|NC_013693. 83 EVI-PGPPIESIGNWATPQWQMAQAMLVPKSALVSIRLIDYVSMQQRLSDITSVLNVKRTFVYKKFQRKL--YPQFALTK 159 (250) Q Consensus 83 kI~-r~~s~~~~~g~~~~~~~~~~~~l~~~~~~g~~~L~~y~~~~qy~~~l~~~l~~~~~f~fN~~t~rL--~i~~~~~~ 159 (250) +-- ..+++.+++|+++++|+- +....+++++|. +..|++++|+..++..+|+|.+++|+|+.++.+ .|.+.+.. T Consensus 64 ~~~~~~g~~~t~~g~~~~~~~~-~fi~~pp~v~gv--~~vf~~~~~~~~~~~n~~~~~~q~~lnd~~~~~~g~il~y~~~ 140 (268) T protein:vir:10 64 DAIKTAAQSTTQQGSTNWYENN-NYVSLPPGVLGV--NHVYTNIGASSVVPGNIFNIKYQIFLNDIYAMTHGQILHYFMT 140 (268) T ss_pred hHHhhhhhhcccCccccccccc-cceecCCceeeh--hhhhhcccccccccccccccchhhhhcchhhhhHHhhhhhhhc Confidence 222 368999999999999973 224679999997 578889999999999999999999999999988 77778999 Q ss_pred CcEEEEEEee-c--CCCCc-CCc-------cccccchHHHHHHHHHHHHHHHHHHHhhcCccCCCce--eecHHHHHHHH Q lcl|NC_013693. 160 DEALAFKCFQ-N--IDPEV-EGN-------EEAWNDMWLKAYATALVKRRWAEVLKKARGIRLPGGI--ELDGDTMFSEA 226 (250) Q Consensus 160 ~d~lvie~y~-~--~dP~~-~~~-------~~~YNd~WvKdyaTAL~K~~wGqnL~Kfqg~qLPGGv--tlnG~~i~~eA 226 (250) +|+|..+.+. + .++.. +.. ..-|...+.-+|. +++..+..=|... --|-+=+-+=| T Consensus 141 ~~~l~~~~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~-----------~i~~~~~~dP~~~~~~YNn~WvKdYa 209 (268) T protein:vir:10 141 SQYLETLDWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDFI-----------MVDLTMRQDPDEYTGMYNDAWLKDYV 209 (268) T ss_pred cceeehhhhhhcccCccceEEEeeeceeEEeeccCCcccchhh-----------hhHhhcccCCchhhhhhhhhHHHHHH Confidence 9988888763 2 12200 000 0012222233333 1222222233322 23455555667 Q ss_pred HHHHHHHHHHHHhhcC---CCCccccC Q lcl|NC_013693. 227 EAEIERLEEELRTGQQ---YPIDFYMG 250 (250) Q Consensus 227 ~~Eie~L~eeL~~~~~---~Pl~~i~G 250 (250) ..-++++--+-+.+++ .|=|+=+= T Consensus 210 tAL~K~~wGq~L~K~qG~qLPGGvTln 236 (268) T protein:vir:10 210 EALFQQQWGRNLSKYDGIQMLGGVTLN 236 (268) T ss_pred HHHHHHHHHHHHHHhcCccCCCceeeC Confidence 7777777766666652 23222221 Done!