Query lcl|NC_012697.1_cdsid_YP_002899042.1 [gene=DSS3P2_gp32] [protein=hypothetical protein] [protein_id=YP_002899042.1] [location=15180..15512] Match_columns 110 No_of_seqs 5 out of 8 Neff 2.3 Searched_HMMs 1612 Date Thu Nov 7 13:37:44 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_32 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_32_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:96750 Length: 176 95.4 0.00035 2.1E-07 39.6 8.6 95 1-110 1-96 (176) 2 protein:vir:3133 Length: 911 # 30.0 0.44 0.00027 22.5 2.4 97 1-110 586-702 (911) 3 protein:vir:2506 Length: 116 # 2.0 33 0.021 12.2 3.0 46 1-50 51-116 (116) 4 protein:vir:2741 Length: 128 # 1.5 33 0.02 12.3 0.9 93 1-105 29-128 (128) 5 protein:vir:3972 Length: 129 # 1.1 42 0.026 11.7 0.5 91 1-103 30-129 (129) 6 protein:vir:4907 Length: 128 # 1.0 50 0.031 11.2 0.8 93 1-105 29-128 (128) 7 protein:vir:108052 Length: 660 1.0 64 0.04 10.6 2.4 38 64-110 1-39 (660) 8 protein:vir:7021 Length: 803 # 1.0 64 0.04 10.6 4.3 44 1-49 758-803 (803) 9 protein:vir:6894 Length: 660 # 1.0 66 0.041 10.5 2.1 38 64-110 1-39 (660) 10 protein:vir:6214 Length: 111 # 0.9 75 0.046 10.3 2.6 37 1-37 73-111 (111) No 1 >protein:vir:96750 Length: 176 # NCBI annotation: putative phage-related protein # Family: family:all:3872 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039816;genbank:gi:126010851;genbank:GeneID:5076260 Probab=95.39 E-value=0.00035 Score=39.56 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=70.8 Q ss_pred CCcceeeeeecCceeEEEEEecCcccCCceeeec-CcEEEeeeecccceeeeeEEEecCCCCceEEEEeCCCCccccccc Q lcl|NC_012697. 1 MADEVRYEFTRGDDFKIPMTLTDPANNGVPVDIT-GWTIASQVRYARKLISELDVTITNGSLGQFTISLPHAQTALWPVR 79 (110) Q Consensus 1 ~~~~~~~~~~rGd~F~~~~T~td~~~ng~pVDlT-g~~iAsQvR~~g~~i~~L~~~i~~~~~G~~tLs~~~~~Ta~Wp~g 79 (110) |. +-..++.||.+.+...+-+ -|. + ||+...=.|+... -+|.++.. .+.+.++.++++|+.|+|| T Consensus 1 ~~--~P~kl~aG~S~s~~~~~~~-----YPa--~~~w~l~~~lrG~~~--idl~a~~d---g~~~~~~~~a~~Ta~W~pG 66 (176) T protein:vir:96 1 MS--EPIKLQAGDSITWSREAPG-----YPA--EDGWSLHYALRGPAP--IDLSTTGD---GTVYKVSVSAADSAKWSAG 66 (176) T ss_pred CC--ccceeccccceEEeeccCC-----CCC--CccceeeeeeeCCee--EEEEEecc---CceeEEEecCccccccCcC Confidence 54 3456889999999888733 232 3 3777777776544 44777654 4568999999999999999 Q ss_pred eeEEEEEEecCccceeeeeeEEEEEcCCCcC Q lcl|NC_012697. 80 VLKCDIQFDRPVEGRVSSRTFLIDCMEDQTQ 110 (110) Q Consensus 80 ~~~cDiqf~rp~~gvvss~tF~i~V~edvTq 110 (110) .|.--+.++-+.+ |+....=-|++++|.-+ T Consensus 67 ~Y~y~~r~~~g~d-~~~~~~G~i~I~pDla~ 96 (176) T protein:vir:96 67 DYVFSCFVVKGED-RQTLGTGRLTILPDLAA 96 (176) T ss_pred ceEEEEEEeCCcc-eeeeccceEEEeechhh Confidence 9999999987744 66666667888888876 No 2 >protein:vir:3133 Length: 911 # NCBI annotation: hypothetical protein # Family: family:all:5234 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640315;genbank:gi:21234408;genbank:GeneID:956056 Probab=30.04 E-value=0.44 Score=22.53 Aligned_cols=97 Identities=23% Similarity=0.199 Sum_probs=55.8 Q ss_pred CCcceeeeeecCceeEEEEEecCcccCCceeeecCcEEEeeeecccceeeeeEEEecCCCCceEEEEe--CCCCcccccc Q lcl|NC_012697. 1 MADEVRYEFTRGDDFKIPMTLTDPANNGVPVDITGWTIASQVRYARKLISELDVTITNGSLGQFTISL--PHAQTALWPV 78 (110) Q Consensus 1 ~~~~~~~~~~rGd~F~~~~T~td~~~ng~pVDlTg~~iAsQvR~~g~~i~~L~~~i~~~~~G~~tLs~--~~~~Ta~Wp~ 78 (110) ...|+.-|.+|=+-.+|.-++-||-.+---||-+ |-+=..--....+|.+|++|.-+ .+-+-+||.. T Consensus 586 TreEvtvPi~~etgaiIve~gsdPV~~tl~vdtt-----------GvDg~ayLl~frdg~~g~~~f~a~~~~~~~~dw~~ 654 (911) T protein:vir:31 586 TRAEVSIPITETDGTVITDTLGDPVTVTRTVTTT-----------GVDGLAYFASFDDGVNGQFNFIAEHQPWGFADWAN 654 (911) T ss_pred ccccceeeEEeecceEEEecCCCCeEEEEeeecc-----------cccceeEEEeeccCCcceEEEEEeecCCeeecccc Confidence 6778888888888888777775533322222222 22212222347899999999944 4456789987 Q ss_pred ------ceeEE--EEEEecCcccee----e---eeeE---EEEEcCCCcC Q lcl|NC_012697. 79 ------RVLKC--DIQFDRPVEGRV----S---SRTF---LIDCMEDQTQ 110 (110) Q Consensus 79 ------g~~~c--Diqf~rp~~gvv----s---s~tF---~i~V~edvTq 110 (110) -+|+. |.-|+-| |++ | -.+| -|+|.+|+-- T Consensus 655 ~~~~~~~~y~s~~~~~y~~~--~~~~~~~~~pyi~sy~~~~~rv~~~~y~ 702 (911) T protein:vir:31 655 VPNMTRVNYSSYVDFAYEYP--EVMIGNISLPYIHSYYLTGIRVQTEQYT 702 (911) T ss_pred CccccccchhHHHHhhhhhh--hhhhhcccCceeeeeeeeeeEEecccee Confidence 56653 4444334 332 2 1222 2667666533 No 3 >protein:vir:2506 Length: 116 # NCBI annotation: hypothetical protein # Family: family:all:7208 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569747;genbank:gi:18496897;genbank:GeneID:932259 Probab=2.00 E-value=33 Score=12.21 Aligned_cols=46 Identities=28% Similarity=0.399 Sum_probs=27.3 Q ss_pred CCccee-----------------eeeecCceeEEEEEecCcccCCceeeec-CcEEEeeeec--ccceee Q lcl|NC_012697. 1 MADEVR-----------------YEFTRGDDFKIPMTLTDPANNGVPVDIT-GWTIASQVRY--ARKLIS 50 (110) Q Consensus 1 ~~~~~~-----------------~~~~rGd~F~~~~T~td~~~ng~pVDlT-g~~iAsQvR~--~g~~i~ 50 (110) +||.|- .+.-||-.|+.|+-.-| -|--|.|.+ ||-+- +|. .|+|-+ T Consensus 51 la~r~vtE~tM~T~~~DW~~~d~V~~w~GR~FkV~G~V~D--YNlGPF~F~PGY~V~--LRrVndga~~~ 116 (116) T protein:vir:25 51 LADRVITEYTMATPESDWTHGDQVTDARGRKFKVHGDVED--YNLGPFGFTPGYRVT--LRRVNDGAQTA 116 (116) T ss_pred hcCceeeeeeeecccCCCCcccceecccCcEEEecCCccc--cccCCCCCCCCeeee--eeeccccccCC Confidence 222222 24568999999999966 666677764 56443 233 255544 No 4 >protein:vir:2741 Length: 128 # NCBI annotation: hypothetical protein # Family: family:all:504 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695114;genbank:gi:23455883;genbank:GeneID:955650 Probab=1.47 E-value=33 Score=12.26 Aligned_cols=93 Identities=13% Similarity=0.177 Sum_probs=44.7 Q ss_pred CCcceeeeeec-CceeEEEEEecCcccCCcee--eecCcEEEeeeecccceeeeeEEEecCCCCceEEEEeCCCCcccc- Q lcl|NC_012697. 1 MADEVRYEFTR-GDDFKIPMTLTDPANNGVPV--DITGWTIASQVRYARKLISELDVTITNGSLGQFTISLPHAQTALW- 76 (110) Q Consensus 1 ~~~~~~~~~~r-Gd~F~~~~T~td~~~ng~pV--DlTg~~iAsQvR~~g~~i~~L~~~i~~~~~G~~tLs~~~~~Ta~W- 76 (110) | |++.|||+. |++...+---.+ .-|.-+ .|-=|.-+.| |++++++...+-....++. ++.--.| T Consensus 29 ~-~~~~YPfV~ig~~~~~~~~tkt--~~~g~~~l~i~vW~~~~~----R~~v~~i~~~i~~~~~~~~-----~t~~y~~~ 96 (128) T protein:vir:27 29 P-DDAAYPFVVMGETMVLPQSTKS--HLIGRLSSTVHVWGHVDD----RKTLSDMAGQLMSSFFAIK-----KIGGKQFS 96 (128) T ss_pred C-CCCCcCEEEeccceecCCcccc--ccccEEEEEEEEEECCcc----hhHHHHHHHHHHHHhcccc-----ccCCeeEE Confidence 5 789999975 766655443322 233333 3334443333 4555544444433332321 1222233 Q ss_pred -ccceeEEEEEEecCccceee--eeeEEEEEc Q lcl|NC_012697. 77 -PVRVLKCDIQFDRPVEGRVS--SRTFLIDCM 105 (110) Q Consensus 77 -p~g~~~cDiqf~rp~~gvvs--s~tF~i~V~ 105 (110) -....-|.+.=|+.+.+... .=+|.+..+ T Consensus 97 ~~~~~~~~qil~Dtst~~~l~Hgii~l~f~~~ 128 (128) T protein:vir:27 97 AEVNESSIDSNRDNSTDEVLYHFIIYTYFKFI 128 (128) T ss_pred EEeecceEEEeeecCCCceeeEEEEEEEEEeC Confidence 23445566666666666665 222444444 No 5 >protein:vir:3972 Length: 129 # NCBI annotation: structural protein # Family: family:all:504 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663680;genbank:gi:21716117;genbank:GeneID:951217 Probab=1.08 E-value=42 Score=11.68 Aligned_cols=91 Identities=19% Similarity=0.290 Sum_probs=42.6 Q ss_pred CCcceeeeeec-CceeEEEEEecCcccCCcee--eecCcEEEeeeecccceeeeeEEEecCCCCceEEEEeCCCCccccc Q lcl|NC_012697. 1 MADEVRYEFTR-GDDFKIPMTLTDPANNGVPV--DITGWTIASQVRYARKLISELDVTITNGSLGQFTISLPHAQTALWP 77 (110) Q Consensus 1 ~~~~~~~~~~r-Gd~F~~~~T~td~~~ng~pV--DlTg~~iAsQvR~~g~~i~~L~~~i~~~~~G~~tLs~~~~~Ta~Wp 77 (110) | |+|.||||- |++...+.--.+ .-|.-| .|-=|.-+. +|.+++++...+-....+. ..+.--.|. T Consensus 30 ~-~~v~YPfV~ig~~~~~~~~tKt--~~~g~v~ltihVW~~~~----~R~~v~~i~~~i~~~~~~~-----~~t~~y~~~ 97 (129) T protein:vir:39 30 M-NEVGYPFVEMENTQTIHEPNKT--DIKGTVSLSLSVWGLQK----KRKEVSDMASNIFNQALNI-----SATDGYSWA 97 (129) T ss_pred C-CCCCcCEEEeeeeeecCCcccc--ccccEEEEEEEEEeCCc----CchhHHHHHHHHHHHhccc-----ccCCCeeEE Confidence 6 789999974 666555443322 223333 333344322 3555555555553322222 123334454 Q ss_pred cc--eeEEEEEEecCccceeee----eeEEEE Q lcl|NC_012697. 78 VR--VLKCDIQFDRPVEGRVSS----RTFLID 103 (110) Q Consensus 78 ~g--~~~cDiqf~rp~~gvvss----~tF~i~ 103 (110) .. ..-|.+.=|....+...- =.|.|+ T Consensus 98 ~~~~~~~~q~~~Dts~~~~L~Hgvi~l~f~~r 129 (129) T protein:vir:39 98 LNLQASTIQMMDDTTTGTPLKRAFINLEFRLR 129 (129) T ss_pred EeecceeEEEecccCCCceeeeEEEEEEEEeC Confidence 22 444555554434555552 225555 No 6 >protein:vir:4907 Length: 128 # NCBI annotation: gp128 # Family: family:all:504 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056685;genbank:gi:9635020;genbank:GeneID:1262660 Probab=1.04 E-value=50 Score=11.23 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=42.8 Q ss_pred CCcceeeeeec-CceeEEEEEecCcccCCce--eeecCcEEEeeeecccceeeeeEEEecCCCCceEEEEeCCCCcc--c Q lcl|NC_012697. 1 MADEVRYEFTR-GDDFKIPMTLTDPANNGVP--VDITGWTIASQVRYARKLISELDVTITNGSLGQFTISLPHAQTA--L 75 (110) Q Consensus 1 ~~~~~~~~~~r-Gd~F~~~~T~td~~~ng~p--VDlTg~~iAsQvR~~g~~i~~L~~~i~~~~~G~~tLs~~~~~Ta--~ 75 (110) | +++-||||. |+.-..+---.+ .-|.- +.|-=|.-+. +|++++++.+.+-....+.. .+.-- . T Consensus 29 ~-~~v~YPfV~ig~~~~~~~~tKt--~~~g~v~ltihVW~~~~----~R~ev~~i~~~i~~~l~~~~-----~t~~y~f~ 96 (128) T protein:vir:49 29 P-DDAAYPFVVMGETMVLPQSTKS--HLIGRLSSTVHVWGRVD----DRKTLSDMAGQLMSSFFAIK-----NIGGKQFS 96 (128) T ss_pred C-CCCCCCEEEeeeeeecCCcccc--ccccEEEEEEEEEeCCC----CchhHHHHHHHHHHHhhccc-----ccCCeEEE Confidence 5 788999975 666555443322 23333 3333443322 35555555555544333321 11111 2 Q ss_pred cccceeEEEEEEecCccceee--eeeEEEEEc Q lcl|NC_012697. 76 WPVRVLKCDIQFDRPVEGRVS--SRTFLIDCM 105 (110) Q Consensus 76 Wp~g~~~cDiqf~rp~~gvvs--s~tF~i~V~ 105 (110) |....--+.+.=|..+.+... .=++.++.+ T Consensus 97 ~~i~~s~~~~~~D~st~~~L~Hgvl~l~f~~~ 128 (128) T protein:vir:49 97 AEINQSSIDSNRDNSTDEVLYHFVIYTYFKFV 128 (128) T ss_pred EEeccceEEEEeecCCCcceeeEEEEEEEEeC Confidence 334444555555555555444 222344444 No 7 >protein:vir:108052 Length: 660 # NCBI annotation: gp18 tail sheath protein # Family: family:all:661 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595294;genbank:gi:161622600;genbank:GeneID:5783771 Probab=1.00 E-value=64 Score=10.64 Aligned_cols=38 Identities=5% Similarity=-0.030 Sum_probs=23.4 Q ss_pred EEEEeCCCCccccccceeEEEEEEecCccceeeeee-EEEEEcCCCcC Q lcl|NC_012697. 64 FTISLPHAQTALWPVRVLKCDIQFDRPVEGRVSSRT-FLIDCMEDQTQ 110 (110) Q Consensus 64 ~tLs~~~~~Ta~Wp~g~~~cDiqf~rp~~gvvss~t-F~i~V~edvTq 110 (110) +|+.+ ||.|.=.+-+.+|++|+=.|.. |+=.-.-+=.+ T Consensus 1 ~~~~~---------Pgvyv~e~~~~~~i~~~~t~~~~~vg~~~~gp~~ 39 (660) T protein:vir:10 1 MALLS---------PGIELKETSVQSTVVRNATGRAALVGKFQWGPAF 39 (660) T ss_pred Cceec---------CceEEEeecCCccccCCCcccceEEeecCCCCCc Confidence 55555 5888888888999999866655 54322222111 No 8 >protein:vir:7021 Length: 803 # NCBI annotation: tail protein # Family: family:all:825 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853594;genbank:gi:31711676;genbank:GeneID:1481802 Probab=1.00 E-value=64 Score=10.62 Aligned_cols=44 Identities=5% Similarity=0.106 Sum_probs=20.0 Q ss_pred CCcceeeeeecCceeEEEEEecCcccCCceeeecCcEEEeeeec--cccee Q lcl|NC_012697. 1 MADEVRYEFTRGDDFKIPMTLTDPANNGVPVDITGWTIASQVRY--ARKLI 49 (110) Q Consensus 1 ~~~~~~~~~~rGd~F~~~~T~td~~~ng~pVDlTg~~iAsQvR~--~g~~i 49 (110) ..-+++.|. +|.-=....+| .+++..|..|.+.+. ..+| .++.+ T Consensus 758 ~tg~~~vP~-~~~~~~~~v~i--~~d~P~P~tvlsi~w--eg~y~~r~rrv 803 (803) T protein:vir:70 758 REGVFKFPL-RSLSTDTVYRV--MVESPHTFQLRDIEW--EGSYNPTKRRV 803 (803) T ss_pred ccceEEEEe-eccCcceEEEE--EECCCCCeEEEEEEE--EEEEecccccC Confidence 111234443 33222233455 556777777766543 3444 24444 No 9 >protein:vir:6894 Length: 660 # NCBI annotation: gp18 tail sheath protein # Family: family:all:661 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861870;genbank:gi:32453661;genbank:GeneID:1494296 Probab=0.96 E-value=66 Score=10.54 Aligned_cols=38 Identities=5% Similarity=-0.095 Sum_probs=22.9 Q ss_pred EEEEeCCCCccccccceeEEEEEEecCccceeeeee-EEEEEcCCCcC Q lcl|NC_012697. 64 FTISLPHAQTALWPVRVLKCDIQFDRPVEGRVSSRT-FLIDCMEDQTQ 110 (110) Q Consensus 64 ~tLs~~~~~Ta~Wp~g~~~cDiqf~rp~~gvvss~t-F~i~V~edvTq 110 (110) ++|.+ ||.|-=-|.|.+|++|+-.|.. |+=.-.-+=.+ T Consensus 1 ~~~~~---------PgVyv~e~~~~~~i~~v~ts~~~fvG~~~~Gp~~ 39 (660) T protein:vir:68 1 MALLS---------PGVELKETTVQSTVVNNSTGTAALAGKFQWGPAF 39 (660) T ss_pred Ccccc---------CceEEEEecCCcccccCCCcceeEEecccCCCCc Confidence 44444 5888888889999999865544 54322211111 No 10 >protein:vir:6214 Length: 111 # NCBI annotation: hypothetical protein # Family: family:all:10884 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852594;genbank:gi:31415854;genbank:GeneID:1489212 Probab=0.85 E-value=75 Score=10.26 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=20.2 Q ss_pred CCcceeeee--ecCceeEEEEEecCcccCCceeeecCcE Q lcl|NC_012697. 1 MADEVRYEF--TRGDDFKIPMTLTDPANNGVPVDITGWT 37 (110) Q Consensus 1 ~~~~~~~~~--~rGd~F~~~~T~td~~~ng~pVDlTg~~ 37 (110) |..+-.--. |+|-+++|+--|+++.+.-..+.|.=-- T Consensus 73 i~~tqk~~rvrI~~~~YkItRIY~~~d~r~MElsL~Yvd 111 (111) T protein:vir:62 73 IENNQKNYRVKVGGRIYNIERIYVKEEDRLMEVSLSYAN 111 (111) T ss_pred hhhccCcceEEecceEEEEEEEEECccceeEeeEeeecC Confidence 322221112 6788888888888877665555443111 Done!