BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_012662.1_cdsid_YP_002875662.1 [gene=VPP93_gp38] [protein=putative DNA maturase B] [protein_id=YP_002875662.1] [location=38536..40341] (601 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: put... 516 e-148 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 515 e-148 gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 511 e-146 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 381 e-107 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 352 7e-99 gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 332 8e-93 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 283 3e-78 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 276 4e-76 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 276 5e-76 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 276 6e-76 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 275 9e-76 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 275 9e-76 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 275 1e-75 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 272 1e-74 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 262 9e-72 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 261 2e-71 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 255 8e-70 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 50 6e-08 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 49 1e-07 gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hyp... 39 2e-04 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 31 0.040 gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 31 0.044 gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hyp... 31 0.044 gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfW... 31 0.047 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 31 0.052 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 30 0.11 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 30 0.12 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 29 0.17 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 28 0.30 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 27 0.64 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 26 1.0 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 26 1.0 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 24 4.1 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 24 4.1 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 24 4.3 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 24 4.6 >gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877482;genbank:gi:33300854;uniprot:Q7Y2C2 ;genbank:GeneID:1482617 Length = 601 Score = 516 bits (1328), Expect = e-148, Method: Compositional matrix adjust. Identities = 269/561 (47%), Positives = 360/561 (64%), Gaps = 14/561 (2%) Query: 6 FKNFEDFAYVGMRFLGFDLTDMQADIAQYMQHGPRKKMVCAQRGEAKSTLAALYSVWRLI 65 + F DF M FLGF +T MQ DIA +MQ P K MV AQRGEAKST+A +Y VW + Sbjct: 17 YPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRGEAKSTIACIYVVWCIT 76 Query: 66 QDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKP 125 Q+ +TR ++VSG +A E L+ +LI WDLL +LR + GDRTS +DV+ LK Sbjct: 77 QNPATRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKG 136 Query: 126 LEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGDT 185 +EK+ S+ C+GITA LQG RAD+LIPDDIETTKNGLT T+R L S++F +I THG Sbjct: 137 VEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICTHGKI 196 Query: 186 LYLGTPQTKDSIYKTLPSRGFEVRVWCGRIPSVEQEEKYGDTLAPY----IKMLIEQGAR 241 LYLGTPQ+++SIY LP+RGF +R+W GR P+++++ +YGD LAP I L E+G Sbjct: 197 LYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQARYGDWLAPSILARIARLEEKGHN 256 Query: 242 -RTGFGVDGTLGETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDM 300 RTG G+DGT G DPQRY+E L++KELD GPEGF LQYMLDT+L+D R ++KL D+ Sbjct: 257 PRTGKGLDGTRGWAADPQRYNEEDLLDKELDQGPEGFQLQYMLDTSLADEQRMQLKLRDL 316 Query: 301 IIHAGDSNSAPDMFSWTADKR-ALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDP 358 + S P+ +W AD+R L + H V+ LY P + P + M +DP Sbjct: 317 LFIDATHESVPEQVAWAADERFKLKFDAHRFPVIKPELYLPALMAGGWAPLQQMTMFVDP 376 Query: 359 AGCGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGH 418 AG GGDE+S+A+GG Y+H+ GG++GG +EEN+ + I LA + VK I +E N+G Sbjct: 377 AGDGGDELSYALGGTLGPYIHVVSIGGWKGGFAEENLEKCIALAARYGVKVIYVEKNLGA 436 Query: 419 GTVTMLFQNALAQRD-------IAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSA 471 G V LF+N + D IGV D + S QKERRIIDT+ P+ +RHRL+ H SA Sbjct: 437 GAVGQLFRNHMRSIDPDTGKLRYEGIGVEDRQKSGQKERRIIDTLRPIMQRHRLIFHVSA 496 Query: 472 LDMDIECCMSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDER 531 +D D C YP D+R + S F Q+ +IT D+G L KDDR DA+ LV+EL LV+D+ Sbjct: 497 MDSDHVSCQQYPADKRNERSVFHQIHNITTDRGSLPKDDRIDALEGLVRELAPTLVKDDE 556 Query: 532 SAAEKALQMRVAEFILNPMAY 552 +A + E++ NPM Y Sbjct: 557 AATRAREEAAKKEWLNNPMGY 577 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 515 bits (1327), Expect = e-148, Method: Compositional matrix adjust. Identities = 267/561 (47%), Positives = 360/561 (64%), Gaps = 14/561 (2%) Query: 6 FKNFEDFAYVGMRFLGFDLTDMQADIAQYMQHGPRKKMVCAQRGEAKSTLAALYSVWRLI 65 + F DF M FLGF +T MQ DIA +MQ P K MV AQRGEAKST+A +Y VW ++ Sbjct: 17 YPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRGEAKSTIACIYVVWCIV 76 Query: 66 QDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKP 125 +D TR ++VSG +A E L+ +LI WDLL +LR + GDRTS +DV+ LK Sbjct: 77 RDPRTRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKG 136 Query: 126 LEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGDT 185 +EK+ S+ C+GITA LQG RAD+LIPDDIETTKNGLT T+R L S++F +I THG Sbjct: 137 VEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICTHGKI 196 Query: 186 LYLGTPQTKDSIYKTLPSRGFEVRVWCGRIPSVEQEEKYGDTLAPY----IKMLIEQGAR 241 LYLGTPQ+++SIY LP+RGF +R+W GR P+++++E+YGD LAP I L E+G Sbjct: 197 LYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQERYGDWLAPSILERIARLEERGHN 256 Query: 242 -RTGFGVDGTLGETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDM 300 RTG G+DGT G DPQRY+E LI+KELD G EGF LQYMLDT+L+D R ++KL D+ Sbjct: 257 PRTGKGLDGTRGWAADPQRYNEEDLIDKELDQGAEGFQLQYMLDTSLADEQRMQLKLRDL 316 Query: 301 IIHAGDSNSAPDMFSWTADKR-ALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDP 358 + S P+ +W AD+R L + H ++ LY P + P + M +DP Sbjct: 317 LFIDATHESVPEQVAWAADERFKLKFDAHRFPIIKPELYLPALMAGGWAPLQQMTMFVDP 376 Query: 359 AGCGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGH 418 AG GGDE+S+A+GG Y+H+ GG++GG +EEN+ + I LA + VK I +E N+G Sbjct: 377 AGDGGDELSYAVGGTLGPYIHVVSIGGWKGGFAEENLEKCIALAARYGVKVIYVEKNLGA 436 Query: 419 GTVTMLFQNAL-------AQRDIAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSA 471 G V LF+N + + IG+ D + S QKERRIIDT+ P+ +RHRL+ H SA Sbjct: 437 GAVGQLFRNYMRSINPDTGKPRYEGIGIEDRQKSGQKERRIIDTLRPIMQRHRLIFHVSA 496 Query: 472 LDMDIECCMSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDER 531 +D D C YP D+R + S F Q+ +IT D+G L KDDR DA+ LV+EL LV+D+ Sbjct: 497 MDSDYVACQQYPADKRTERSVFHQIHNITTDRGSLPKDDRIDALEGLVRELTPSLVKDDE 556 Query: 532 SAAEKALQMRVAEFILNPMAY 552 +A + E++ NPM Y Sbjct: 557 AATRAREEAAKKEWLNNPMGY 577 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 511 bits (1315), Expect = e-146, Method: Compositional matrix adjust. Identities = 269/569 (47%), Positives = 362/569 (63%), Gaps = 11/569 (1%) Query: 6 FKNFEDFAYVGMRFLGFDLTDMQADIAQYMQHGPRKKMVCAQRGEAKSTLAALYSVWRLI 65 + F DF M +LG+ +T MQ DIA++MQ+GP++ MV AQRGEAKST+A L+ +W L+ Sbjct: 17 YPEFVDFCRDAMEYLGYSMTWMQEDIAEFMQYGPQRSMVAAQRGEAKSTIACLFGLWNLV 76 Query: 66 QDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKP 125 QD + RV++VSG + +A E L+ LI W LL +L D GDRTS +DVH LK Sbjct: 77 QDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAGDRTSVLEFDVHWSLKG 136 Query: 126 LEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAI--NTHG 183 ++K+ SV C+GIT+ LQG R DLLIPDDIETTKNGLT T+R L+T+SK+F +I + +G Sbjct: 137 VDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLSKEFTSIVADRNG 196 Query: 184 DTLYLGTPQTKDSIYKTLPSRGFEVRVWCGRIPSVEQEEKYGDTLAPYI--KMLIEQGAR 241 LYLGTPQT++SIY TLP RGF VRVW GR P + KYGD LAP I +M + Sbjct: 197 RILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPKYGDALAPSILERMALLGDRC 256 Query: 242 RTGFGVDGTLGETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMI 301 +TG G+DGT G +TDP+RY E L +KELD GPE F LQ+ML+T+LSDA R ++KL D+I Sbjct: 257 QTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQFMLNTSLSDAARQQLKLRDLI 316 Query: 302 IHAGDSNSAPDMFSWTADKRALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDPAG 360 + P+ W AD R + V ++ P S+ K + +DPAG Sbjct: 317 VADFSHEQVPESVFWAADPRFKIDLPQEFPVQSVEMFRPASVHEHFAQIKSMTLFLDPAG 376 Query: 361 CGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHGT 420 GGDE++FAIGGA Y+H+ GGF+GGVSE+N+++L+ L +DF VK +++E NMG GT Sbjct: 377 NGGDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCKDFGVKVVLVEKNMGAGT 436 Query: 421 VTMLFQNAL------AQRDIAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDM 474 VT L +N ++ +A +GV + + QKE RII+TI PV ++HRLV+H SA++M Sbjct: 437 VTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKELRIINTIRPVMQKHRLVLHRSAVEM 496 Query: 475 DIECCMSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDERSAA 534 D+E YP R S Q+ +IT D+G L+KDDR DA+ LV EL LV DE Sbjct: 497 DLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDRLDALEGLVAELMGFLVIDEVKEQ 556 Query: 535 EKALQMRVAEFILNPMAYQGVDTRPRNKG 563 ++ V EF+ NPM RP G Sbjct: 557 QRRDAAVVQEFLRNPMGTGPGVGRPLKSG 585 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 381 bits (978), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/538 (37%), Positives = 326/538 (60%), Gaps = 14/538 (2%) Query: 23 DLTDMQADIAQYMQHGPRKKMVCAQRGEAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQA 82 DL +QADI +++ G + +MV AQRG+AK+T+AA+Y+V+R+I + R++IVS K+A Sbjct: 49 DLNRVQADILKFLFGGNKYRMVEAQRGQAKTTIAAIYAVFRIIHEPHKRIMIVSQTAKRA 108 Query: 83 SEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQ 142 E+A VI++ D L ++ D GD+ S +G+++H L+ +K+PSVAC I A +Q Sbjct: 109 EEIAGWVIKIFRGLDFLEFMLPDIYAGDKASIKGFEIHYTLRGSDKSPSVACYSIEAGMQ 168 Query: 143 GKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGDTLYLGTPQTKDSIYKTLP 202 G RAD+++ DD+E+ +N T R L ++K+F +IN GD +YLGTPQ+ +SIY LP Sbjct: 169 GARADIILADDVESLQNSRTAAGRALLEDLTKEFESINQFGDIIYLGTPQSVNSIYNNLP 228 Query: 203 SRGFEVRVWCGRIPSVEQEEKYGDTLAPYIKM-LIEQGARRTGFGVDGTLGETTDPQRYD 261 +RG+++R+W GR P++EQE YGD LAP I+ +I+ + R+G+G+DGT G T P+ YD Sbjct: 229 ARGYQIRIWPGRYPTLEQEACYGDFLAPMIRQDMIDDPSLRSGYGIDGTQGAPTCPEMYD 288 Query: 262 EGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMIIHAGDSNSAPDMFSWTADKR 321 + LIEKE+ G F LQ+ML+T L DA R ++L+ +I+ + ++ P+M +W+ D Sbjct: 289 DEKLIEKEISQGTAKFQLQFMLNTRLMDADRYPLRLNQLILMSFGTDVVPEMPTWSNDSV 348 Query: 322 ALYPEVHDGVLGAR----LYTPLSIGTEIIPYKHKIMVIDPAGCG--GDEISFAIGGAAS 375 L + G + LY P+ E P + ++M IDPAG G GDE AI Sbjct: 349 NLISDAPR--FGNKPTDYLYRPVPRPYEWRPIQRRLMYIDPAGGGKNGDETGVAIVFLLG 406 Query: 376 AYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHGTVTMLFQNALAQRDIA 435 +++++ G GG SE ++R++ A+ EVK++ IE N GHG + + + A Sbjct: 407 TFIYVYKVFGVPGGYSESALSRIVREAKQAEVKEVFIEKNFGHGAFEAVIKPYFEREWPA 466 Query: 436 HIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECCMSYPRDRRWQYSAFLQ 495 + ++ + QKE RII+T+ P+ HR++ + + DI+ YP + R YS F Q Sbjct: 467 EL--KEDYATGQKEARIIETLEPLMSAHRIIFNAEMIKQDIDSVQHYPLEVRMSYSLFAQ 524 Query: 496 LQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDE--RSAAEKALQMR-VAEFILNPM 550 + +IT +KGCL DDR DA+ +++L + + DE R +A +MR E + +P+ Sbjct: 525 MSNITLEKGCLRHDDRLDALYGAIRQLTSQIDYDEANRINRLRAKEMREYLEMMTDPL 582 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 352 bits (903), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 191/525 (36%), Positives = 306/525 (58%), Gaps = 9/525 (1%) Query: 24 LTDMQADIAQYMQHGPRKKMVCAQRGEAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQAS 83 L MQADI +++ +G + +++ A RG AK+TL+A+Y+V+R+I + R+++VS K+A Sbjct: 50 LIRMQADILKFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAE 109 Query: 84 EVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQG 143 E+A V+++ D L ++ D GDR S + +++H L+ +K+PSV+C I A +QG Sbjct: 110 EIAGWVVKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQG 169 Query: 144 KRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGDTLYLGTPQTKDSIYKTLPS 203 RAD+++ DD+E+ +N T R L ++K+F +IN GD +YLGTPQ +SIY LP+ Sbjct: 170 ARADIILADDVESMQNARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPA 229 Query: 204 RGFEVRVWCGRIPSVEQEEKYGDTLAPYI-KMLIEQGARRTGFGVDGTLGETTDPQRYDE 262 RG+ VR+W R PSVEQE+ YGD LAP I + + + A R+G+G+DG G P+ YD+ Sbjct: 230 RGYSVRIWTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDD 289 Query: 263 GALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMIIHAGDSNSAPDMFSWTADKRA 322 LIEKE+ G F LQ+ML+T + DA R ++L+++I + + P M +W+ D Sbjct: 290 EVLIEKEISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSIN 349 Query: 323 LYPEV--HDGVLGARLYTPLSIGTEIIPYKHKIMVIDPAGCG--GDEISFAIGGAASAYV 378 + + + +Y P++ E KIM IDPAG G GDE AI ++ Sbjct: 350 IIGDAPKYGNKPTDFMYRPVARPYEWGAVSRKIMYIDPAGGGKNGDETGVAIVFLHGTFI 409 Query: 379 HLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHGTVTMLFQNALAQRDIAHIG 438 +++ G GG E ++NR++ A+ VK++ IE N GHG + + +R+ + Sbjct: 410 YVYQCFGVPGGYRESSLNRIVQAAKQAGVKEVFIEKNFGHGAFEAVIKPYF-EREWP-VT 467 Query: 439 VRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECCMSYPRDRRWQYSAFLQLQD 498 + + + QKE RII+T+ P+ HRL+ + + D E YP + R YS F Q+ + Sbjct: 468 LEEDYATGQKELRIIETLEPLMAAHRLIFNAEMVKSDFESVQHYPLELRMSYSLFNQMSN 527 Query: 499 ITYDKGCLSKDDRADAIAMLVQELNAHLVEDE--RSAAEKALQMR 541 IT +K L DDR DA+ +++L + + DE R +A +MR Sbjct: 528 ITIEKNSLRHDDRLDALYGAIRQLTSQIDYDEVTRINRLRAQEMR 572 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 332 bits (851), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 194/531 (36%), Positives = 296/531 (55%), Gaps = 13/531 (2%) Query: 24 LTDMQADIAQYMQHGPRKKMVCAQRGEAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQAS 83 L +QADI ++M G + +MV AQRG+AK+T+AA+Y+V+ +I R+LI S K+A Sbjct: 50 LNRIQADILRFMFTGKKYRMVEAQRGQAKTTIAAIYAVFCIIHRPHFRILISSQTSKRAE 109 Query: 84 EVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQG 143 E+A VI++ D+L ++ D GD+ S G+++H L+ +PSVAC I +QG Sbjct: 110 EIAGWVIKIFRGLDILEFMMPDIYSGDKASIRGFEIHYTLRGSGASPSVACYSIEGSMQG 169 Query: 144 KRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGDTLYLGTPQTKDSIYKTLPS 203 RADL+I DD+E+ +N T R L +K+F +IN GD LYLGTPQ+ +SIY LPS Sbjct: 170 ARADLIIADDVESLQNSATAAGRVKLEEATKEFESINQTGDILYLGTPQSINSIYNNLPS 229 Query: 204 RGFEVRVWCGRIPSVEQEEKYGDTLAPYIKMLIEQGAR-RTGFGVDGTLGETTDPQRYDE 262 RG+++R+W GR P+VEQ+ YGD LAP I +E R G G+ G+ T P+ Y++ Sbjct: 230 RGYQLRIWPGRYPTVEQQVSYGDFLAPLIIEDMEANPELRRGGGITRLQGQPTCPEMYND 289 Query: 263 GALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMIIHAGDSNSAPDMFSWTAD--- 319 ALIEKE+ G F LQ+ML+T LSD+ R +KLS ++ + P+M + D Sbjct: 290 EALIEKEISQGTAKFQLQFMLNTRLSDSERFPLKLSSIMFGNFGVDKVPEMPLHSTDSIN 349 Query: 320 --KRALYPEVHDGVLGARLYTPLSIGTEIIPYKHKIMVIDPAGCG--GDEISFAIGGAAS 375 K A P R Y E P +IM IDPAG G GDE AI Sbjct: 350 EIKEAQRP---GNKSTDRFYRMAPRPYEWKPATRRIMYIDPAGGGQNGDETGVAIVFLLG 406 Query: 376 AYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHGTVTMLFQNALAQRDIA 435 Y++++ G +GG + ++ +++ A++ K++ +E N GHG + + + + Sbjct: 407 TYIYVYKCFGVKGGYEDADLEQIVMAAKEANCKEVFVEKNFGHGAFQAIIKPFFER--LH 464 Query: 436 HIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECCMSYPRDRRWQYSAFLQ 495 +++ + QKE RIIDT+ P+ HRLV +T + D + Y +++ YS F Q Sbjct: 465 PCELQEDYATGQKEERIIDTLEPLLSAHRLVFNTEIIFEDNKAIQKYALEKQASYSLFHQ 524 Query: 496 LQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDERSAAEKALQMRVAEFI 546 + +IT DKG L DDR DA+ V++L + DE + + + ++I Sbjct: 525 IANITRDKGSLRHDDRIDALYGAVRQLTTDIDYDEMAKQSREQMEQARDYI 575 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 283 bits (725), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 181/550 (32%), Positives = 289/550 (52%), Gaps = 24/550 (4%) Query: 8 NFEDFAYVGMRFLGFDL-TDMQADIAQYMQHGPRKKMVC-AQRGEAKSTLAALYSVWRLI 65 +F F +V + L + T Q D+A+ + G ++ + A RG KS + + VW+L Sbjct: 8 DFVFFLFVLWKALSLPVPTRCQIDMAKKLSAGDNRRFILQAFRGIGKSFITCAFVVWKLW 67 Query: 66 QDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRA-DPARGDRTSYEGYDVHCDLK 124 + + +IVS +++A + + R+I DL+ L+ P +G R + +DV K Sbjct: 68 NNPDLKFMIVSASKERADANSIFIKRII---DLMPQLKELKPKQGQRDAVISFDV-GPAK 123 Query: 125 PLEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGD 184 P + +PSV VGIT QL G RAD+LI DD+E N TQ R+ L + K+F AI G Sbjct: 124 P-DHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDRLSELVKEFDAILKPGG 182 Query: 185 TL-YLGTPQTKDSIYKTLPSRGFEVRVWCGRIPSVEQE-EKYGDTLAPYIKMLIEQGARR 242 T+ YLGTPQ + ++Y+ L RG+ +W R P ++ + YGD LAP ++ +E+ Sbjct: 183 TIIYLGTPQNEMTLYRELEGRGYTTTIWPARYPRDRKDWQSYGDRLAPMLQAELEEDP-- 240 Query: 243 TGFGVDGTLGETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMII 302 + TD R+D+ L E+EL +G GFALQ+ML+ LSDA + +KL D+I+ Sbjct: 241 -----ESFYWRPTDEVRFDDTDLKERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDLIV 295 Query: 303 HAGDSNSAPDMFSWTAD---KRALYPEVHDGVLGARLYTPLSIGTEIIPYKHKIMVIDPA 359 D S+P ++ W + KR P V G++G +T ++G+ Y KI+VIDP+ Sbjct: 296 ADLDPASSPMVYQWLPNPQNKREDVPNV--GLMGDSYHTYQTVGSAFSSYTQKILVIDPS 353 Query: 360 GCGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHG 419 G G DE +A+ + Y+ GG +GG + + L + ++V + VIE N G G Sbjct: 354 GRGKDETGYAVLYQLNGYIFAMEVGGMRGGYEDSTLEALAKIGRKWKVNEYVIEGNFGDG 413 Query: 420 TVTMLFQNALAQRDIAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECC 479 LF+ A+ I V ++++ QKE RI D + P+ HRL+V+ +A+ D + Sbjct: 414 MYLELFKPVAAR--IHPAAVTEVKSKGQKELRICDVLEPIMGSHRLIVNAAAIVQDYQSA 471 Query: 480 MSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDERSAAEKALQ 539 R YS F Q+ I+ ++G L+ DDR DA+A+ VQ + +D + + Sbjct: 472 SDKDGVRNPIYSLFYQMTRISRERGALAHDDRLDALAIGVQFFVESMAKDANKGEREVTE 531 Query: 540 MRVAEFILNP 549 + E + NP Sbjct: 532 EWLEEQMENP 541 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 276 bits (707), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 182/555 (32%), Positives = 291/555 (52%), Gaps = 21/555 (3%) Query: 8 NFEDFAYVGMRFLGFDL-TDMQADIAQYMQHGPRKKMVC-AQRGEAKSTLAALYSVWRLI 65 +F F +V + L + T Q D+A+ + +G KK + A RG KS + + VW L Sbjct: 18 DFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWTLW 77 Query: 66 QDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKP 125 +D ++LIVS +++A + + +I+ L L+ P G R S +DV KP Sbjct: 78 RDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRP--GQRDSVISFDV-GPAKP 134 Query: 126 LEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGDT 185 + +PSV VGIT QL G RAD++I DD+E N TQ RE L T+ ++FAA+ T Sbjct: 135 -DHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLKPLPT 193 Query: 186 ---LYLGTPQTKDSIYKTLP-SRGFEVRVWCGRIP-SVEQEEKYGDTLAPYIKMLIEQGA 240 +YLGTPQT+ ++YK L +RG+ +W P S E++ YG+ LAP ++ G Sbjct: 194 SRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYGERLAPMLREEFNDG- 252 Query: 241 RRTGFGVDGTLGETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDM 300 + G+ TDP R+D L E+EL++G GF LQ+ML+ LSDA + ++L D Sbjct: 253 ------FEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDA 306 Query: 301 IIHAGDSNSAPDMFSWTADKRALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDPA 359 I+ D AP + W +++ E+ + G+ G +++ S Y+ +I+VIDP+ Sbjct: 307 IVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQYQQRILVIDPS 366 Query: 360 GCGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHG 419 G G DE +A+ + Y++L GGF+ G S++ + L A+ ++V+ +V ESN G G Sbjct: 367 GRGKDETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFESNFGDG 426 Query: 420 TVTMLFQNALAQRDIAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECC 479 +F L + A + ++R KE RI DT+ PV HRLV+ + D + Sbjct: 427 MFGKVFSPVLLKHHAA--ALEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIREDYQTA 484 Query: 480 MSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDERSAAEKALQ 539 +YS F QL + +KG ++ DDR DA+A+ V+ L + + D + L+ Sbjct: 485 RDADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDAVKVEAEVLE 544 Query: 540 MRVAEFILNPMAYQG 554 + E + +P+ G Sbjct: 545 AFLEEHMEHPIHSAG 559 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 276 bits (706), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 183/555 (32%), Positives = 290/555 (52%), Gaps = 21/555 (3%) Query: 8 NFEDFAYVGMRFLGFDL-TDMQADIAQYMQHGPRKKMVC-AQRGEAKSTLAALYSVWRLI 65 +F F +V + L T Q D+A+ + +G KK + A RG KS + + VW L Sbjct: 19 DFVAFLFVLWKALALPPPTKCQIDMARCLANGDNKKFILQAFRGIGKSFITCAFVVWTLW 78 Query: 66 QDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKP 125 +D ++LIVS +++A + + +I+ L L+ P G R S +DV KP Sbjct: 79 RDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRP--GQRDSVISFDV-GPAKP 135 Query: 126 LEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGDT 185 + +PSV VGIT QL G RAD++I DD+E N TQ RE L T+ ++FAA+ T Sbjct: 136 -DHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLKPLPT 194 Query: 186 ---LYLGTPQTKDSIYKTLP-SRGFEVRVWCGRIP-SVEQEEKYGDTLAPYIKMLIEQGA 240 +YLGTPQT+ ++YK L +RG+ +W P S E++ YGD LAP ++ G Sbjct: 195 SRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYGDRLAPMLREEFNDG- 253 Query: 241 RRTGFGVDGTLGETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDM 300 + G+ TDP R+D L E+EL++G GF LQ+ML+ LSDA + ++L D Sbjct: 254 ------FEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDA 307 Query: 301 IIHAGDSNSAPDMFSWTADKRALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDPA 359 I+ D AP + W +++ E+ + G+ G +++ S Y+ +I+VIDP+ Sbjct: 308 IVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQYQQRILVIDPS 367 Query: 360 GCGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHG 419 G G DE +A+ + Y++L GGF+ G S++ + L A+ ++V+ +V ESN G G Sbjct: 368 GRGKDETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFESNFGDG 427 Query: 420 TVTMLFQNALAQRDIAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECC 479 +F L + A + ++R KE RI DT+ PV HRLV+ + D + Sbjct: 428 MFGKVFSPVLLKHHAA--AMEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIREDYQTA 485 Query: 480 MSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDERSAAEKALQ 539 +YS F QL + +KG ++ DDR DA+A+ V+ L + + D + L+ Sbjct: 486 RDADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDAVKVEAEVLE 545 Query: 540 MRVAEFILNPMAYQG 554 + E + +P+ G Sbjct: 546 AFLEEHMEHPIHSAG 560 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 276 bits (705), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 177/537 (32%), Positives = 287/537 (53%), Gaps = 21/537 (3%) Query: 8 NFEDFAYVGMRFLGF-DLTDMQADIAQYMQHGPRKKMVC-AQRGEAKSTLAALYSVWRLI 65 +F F +V + L T Q D+A+ + G KK + A RG KS + + VW L Sbjct: 18 DFVAFLFVLWKALNLPKPTKCQIDMARTLADGDHKKFILQAFRGIGKSFITCAFVVWVLW 77 Query: 66 QDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKP 125 +D +VLIVS +++A + + +I+ L L+ P G R S +DV KP Sbjct: 78 RDPQLKVLIVSASKERADANSIFIKNIIDLLPFLAELKPRP--GQRDSVISFDVGL-AKP 134 Query: 126 LEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGDT 185 + +PSV VGIT QL G RAD++I DD+E N T + RE L T+ +FAA+ T Sbjct: 135 -DHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTSSAREKLWTLVTEFAALLKPLPT 193 Query: 186 ---LYLGTPQTKDSIYKTLP-SRGFEVRVWCGRIPSVEQEE-KYGDTLAPYIKMLIEQGA 240 +YLGTPQT+ ++YK L ++G+ +W + P + E YGD LAP +K ++G Sbjct: 194 SRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQYPRNDAEALYYGDRLAPMLKAEYDEG- 252 Query: 241 RRTGFGVDGTLGETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDM 300 + G+ TDP R+D L E+EL++G G+ LQ+ML+ LSDA + ++L D Sbjct: 253 ------FELLRGQPTDPVRFDTDDLRERELEYGKAGYTLQFMLNPNLSDAEKYPLRLRDA 306 Query: 301 IIHAGDSNSAPDMFSWTADKRALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDPA 359 I+ A D AP + W +++ E+ + G+ G +++ + + Y+ KI+VIDP+ Sbjct: 307 IVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHTCSSRTAEYQSKILVIDPS 366 Query: 360 GCGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHG 419 G G DE +A+ + + Y++L GGF+GG + + +L A+ ++V+ +V ESN G G Sbjct: 367 GRGKDETGYAVLYSLNGYIYLMEVGGFRGGYDDATLEKLAKKAKQWKVQTVVHESNFGDG 426 Query: 420 TVTMLFQNALAQRDIAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECC 479 +F L + A + ++R KE RI DTI P+ H+L++ + D + Sbjct: 427 MFGKIFSPVLLKHHKA--ALEEIRAKGMKEMRICDTIEPLMGSHKLIIRDEVIREDYQTS 484 Query: 480 MSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDERSAAEK 536 +YSAF Q+ +T ++G ++ DDR DAIA+ ++ L ++ D + E+ Sbjct: 485 RDLDGKHDVRYSAFYQMTRMTRERGAVAHDDRLDAIALGIEWLREGMLVDSKIGEEE 541 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 275 bits (704), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 179/550 (32%), Positives = 284/550 (51%), Gaps = 21/550 (3%) Query: 8 NFEDFAYVGMRFLGFDL-TDMQADIAQYMQHGPRKKMVC-AQRGEAKSTLAALYSVWRLI 65 +F F +V + L + T Q D+A+ + +G KK + A RG KS + + VW L Sbjct: 18 DFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLW 77 Query: 66 QDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKP 125 +D ++LIVS +++A + + +I+ L L+ P G R S +DV KP Sbjct: 78 RDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRP--GQRDSVISFDV-GPAKP 134 Query: 126 LEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAIN---TH 182 + +PSV VGIT QL G RAD++I DD+E N T RE L T+ ++FAA+ T Sbjct: 135 -DHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLKPLTS 193 Query: 183 GDTLYLGTPQTKDSIYKTLP-SRGFEVRVWCGRIPSVEQEE-KYGDTLAPYIKMLIEQGA 240 +YLGTPQT+ ++YK L +RG+ +W P +E Y LAP ++ ++ Sbjct: 194 SRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLRAEYDENP 253 Query: 241 RRTGFGVDGTLGETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDM 300 + G TDP R+D L E+EL++G GF LQ+ML+ LSDA + ++L D Sbjct: 254 -------EALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDA 306 Query: 301 IIHAGDSNSAPDMFSWTADKRALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDPA 359 I+ A D AP + W +++ + ++ + G+ G L+T Y+ KI+VIDP+ Sbjct: 307 IVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQKILVIDPS 366 Query: 360 GCGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHG 419 G G DE +A+ + Y++L GGF+ G S++ + L A+ + V+ +V ESN G G Sbjct: 367 GRGKDETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQTVVYESNFGDG 426 Query: 420 TVTMLFQNALAQRDIAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECC 479 +F L + + + ++R KE RI DT+ PV + HRLV+ + D + Sbjct: 427 MFGKVFSPILLKHH--NCAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDEVIRADYQSA 484 Query: 480 MSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDERSAAEKALQ 539 +YS F Q+ IT +KG L+ DDR DA+A+ ++ L + D + L Sbjct: 485 RDVDGKYDVKYSLFYQMTRITREKGALAHDDRLDALALGIEYLRESMQLDSVKVEGEVLA 544 Query: 540 MRVAEFILNP 549 + E ++ P Sbjct: 545 DFLEEHMMRP 554 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 275 bits (704), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 171/515 (33%), Positives = 271/515 (52%), Gaps = 17/515 (3%) Query: 25 TDMQADIAQYMQHGPRKKMVC-AQRGEAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQAS 83 T Q D+A+ + G ++ + A RG KS + + VW+L + + +IVS +++A Sbjct: 36 TRCQKDMARKLAAGDERRFILQAFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERAD 95 Query: 84 EVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQG 143 + + R+I+ L L+ P + R S +DV KP + +PSV VGIT QL G Sbjct: 96 ANSIFIKRIIDLLPFLHELKPRPEQ--RDSVISFDVGL-AKP-DHSPSVKSVGITGQLTG 151 Query: 144 KRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAI-NTHGDTLYLGTPQTKDSIYKTLP 202 RAD+LI DD+E N TQ R+ L + K+F AI +G +YLGTPQ + ++Y+ L Sbjct: 152 SRADILIADDVEVPNNSATQAARDRLGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELE 211 Query: 203 SRGFEVRVWCGRIPS-VEQEEKYGDTLAPYIKMLIEQGARRTGFGVDGTLGETTDPQRYD 261 +RG++ +W R P + E YG+ LAP +K + + + + TDP R+D Sbjct: 212 NRGYKTTIWPARYPKDMNDLETYGNRLAPMLKDELMENP-------EAYWWQPTDPVRFD 264 Query: 262 EGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMIIHAGDSNSAPDMFSWTADKR 321 + L E+EL +G GFALQ+ML+ LSDA + +KL D I+ A + + AP + W + + Sbjct: 265 DEDLRERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDFIVAALEVDKAPLTYGWLPNPQ 324 Query: 322 ALYPEVHDGVLGARLYTPLSIGTE-IIPYKHKIMVIDPAGCGGDEISFAIGGAASAYVHL 380 L V L Y + + Y KIM IDP+G G DE + + + Y++L Sbjct: 325 NLLQNVPQVGLKGDTYHRYDVADKRQASYTSKIMAIDPSGRGKDETGYCVLYFLNGYIYL 384 Query: 381 FGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHGTVTMLFQNALAQRDIAHIGVR 440 TGGF+GG + + L +A+ + V +++ E N G G +F L + + + Sbjct: 385 METGGFRGGYEDSTLEALAKVAKRWNVNEVLCEGNFGDGMFLKIFSPVLNR--VHRCALT 442 Query: 441 DLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECCMSYPRDRRWQYSAFLQLQDIT 500 + +++ QKE RI DT+ PV HR+VV SA+ D + + +YS F QL +T Sbjct: 443 ETKSTGQKEMRIADTLEPVMGAHRIVVMESAIQKDYQTARNVDGTHDIKYSMFYQLTRLT 502 Query: 501 YDKGCLSKDDRADAIAMLVQELNAHLVEDERSAAE 535 ++G L+ DDR DA A+ V L +D ++ A+ Sbjct: 503 RERGALAHDDRLDAFAIGVAYFVEMLEKDSQAGAD 537 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 275 bits (702), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 182/541 (33%), Positives = 277/541 (51%), Gaps = 25/541 (4%) Query: 7 KNFEDFAYVGMRFLGF-DLTDMQADIAQYMQHGPRKKMVC-AQRGEAKSTLAALYSVWRL 64 ++F F +V R L T Q D+A+ + G ++ + A RG KS + + VW+L Sbjct: 16 RSFVAFLFVLWRALNLPKPTKCQIDMAKKLSAGDERRFILQAFRGIGKSFITCAFVVWKL 75 Query: 65 IQDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLK 124 + + +IVS +++A + + R+I+ L L+ P G R S +DV K Sbjct: 76 WNNPDLKFMIVSASKERADANSVFIKRIIDLLPFLHELK--PGPGQRDSSLAFDV-GPAK 132 Query: 125 PLEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGD 184 P + +PSV VGIT QL G RAD+LI DD+E N TQT R+HL + K+F AI G Sbjct: 133 P-DHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQTARDHLGELVKEFDAILKPGG 191 Query: 185 TL-YLGTPQTKDSIYKTLPSRGFEVRVWCGRIPSVEQE-EKYGDTLAPYIKMLIEQGARR 242 T+ YLGTPQT+ ++Y+ L RG+ +W R P + + + YG LAP + ++ Sbjct: 192 TIIYLGTPQTEMTLYRELEGRGYVTTIWPARYPKDQADWDSYGPRLAPMLAAELQ----- 246 Query: 243 TGFGVDGTL-GETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMI 301 DG+L TD R+D+ L E+EL +G GFALQ+ML+ LSD + +KL D I Sbjct: 247 ----ADGSLFWAPTDEVRFDDKDLRERELSYGKGGFALQFMLNPNLSDMEKYPLKLRDFI 302 Query: 302 IHAGDSNSAPDMFSW---TADKRALYPEVHDGVLGARLYTPLSIGTEIIPYKHKIMVIDP 358 + + P W A++ P V G+ G R + S+G Y KI+VIDP Sbjct: 303 VGTFAQDKGPTTLIWMPNAANECKGVPVV--GLKGDRFHRYESVGQATASYAQKILVIDP 360 Query: 359 AGCGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGH 418 +G G DE +A+ + Y+ L GGF+GG + + L ++A+ +V +IV+E N G Sbjct: 361 SGRGKDETGYAVLYQLNGYIFLMDAGGFRGGYEDTVLQALANIAKIHKVNEIVVEGNFGD 420 Query: 419 GTVTMLFQNALAQRDIAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIEC 478 G L + + ++++ QKE RI D + PV H+LV+ S ++ D Sbjct: 421 GMYIKLLAPVVTA--TFPCAITEVKSKGQKELRICDVLEPVLGSHKLVIQESLIEKDYRT 478 Query: 479 CMSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDERSAAEKAL 538 ++ YS QL IT ++G L+ DDR DA+A+ VQ L D + + L Sbjct: 479 ALNADGTTDTSYSLLYQLTRITRERGSLAHDDRLDALAIGVQFFTEALERDSKVGESEML 538 Query: 539 Q 539 Q Sbjct: 539 Q 539 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 272 bits (695), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 177/550 (32%), Positives = 282/550 (51%), Gaps = 21/550 (3%) Query: 8 NFEDFAYVGMRFLGFDL-TDMQADIAQYMQHGPRKKMVC-AQRGEAKSTLAALYSVWRLI 65 +F F +V + L + T Q D+A+ + +G KK + A RG KS + + VW L Sbjct: 18 DFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLW 77 Query: 66 QDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKP 125 +D ++LIVS +++A + + +I+ L L+ P G R S +DV P Sbjct: 78 RDPQLKILIVSASKERADANSIFIKNIIDLLPFLSELKPRP--GQRDSVISFDV-GPANP 134 Query: 126 LEKAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINT---H 182 + +PSV VGIT QL G RAD++I DD+E N T RE L T+ ++FAA+ Sbjct: 135 -DHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLKPLPS 193 Query: 183 GDTLYLGTPQTKDSIYKTLP-SRGFEVRVWCGRIPSVEQEE-KYGDTLAPYIKMLIEQGA 240 +YLGTPQT+ ++YK L +RG+ +W P +E Y LAP ++ ++ Sbjct: 194 SRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLRAEYDENP 253 Query: 241 RRTGFGVDGTLGETTDPQRYDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDM 300 + G TDP R+D L E+EL++G GF LQ+ML+ LSDA + ++L D Sbjct: 254 -------EALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDA 306 Query: 301 IIHAGDSNSAPDMFSWTADKRALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDPA 359 I+ A D AP + W +++ + ++ + G+ G L+T Y+ KI+VIDP+ Sbjct: 307 IVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQKILVIDPS 366 Query: 360 GCGGDEISFAIGGAASAYVHLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHG 419 G G DE +A+ + Y++L GGF+ G S++ + L A+ + V+ +V ESN G G Sbjct: 367 GRGKDETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQTVVYESNFGDG 426 Query: 420 TVTMLFQNALAQRDIAHIGVRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECC 479 +F L + + + ++R KE RI DT+ PV + HRLV+ + D + Sbjct: 427 MFGKVFSPILLKHH--NCAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDEVIRADYQSA 484 Query: 480 MSYPRDRRWQYSAFLQLQDITYDKGCLSKDDRADAIAMLVQELNAHLVEDERSAAEKALQ 539 +YS F Q+ IT +KG L+ DDR DA+A+ ++ L + D + L Sbjct: 485 RDVDGKHDVKYSLFYQMTRITREKGALAHDDRLDALALGIEYLRESMQLDSVKVEGEVLA 544 Query: 540 MRVAEFILNP 549 + E ++ P Sbjct: 545 DFLEEHMMRP 554 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 262 bits (669), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 162/501 (32%), Positives = 262/501 (52%), Gaps = 22/501 (4%) Query: 25 TDMQADIAQYMQHGPRKKMVCAQRGEAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQASE 84 T Q IA Y+QHGP++ + A RG KS + A + +W L D +++++S +++A Sbjct: 31 TRAQLAIADYLQHGPKRLQISAFRGVGKSWITAAFVLWVLFVDPDRKIMVISASKERADN 90 Query: 85 VATLVIRLIETWDLLCWLRADPARGD-RTSYEGYDVHCDLKPLEKAPSVACVGITAQLQG 143 + +LI + L LR P D R S +DV KP +APSV VGIT Q+ G Sbjct: 91 FSIFCQKLILDIEWLSHLR--PRDSDQRWSRISFDV-GPAKP-HQAPSVKSVGITGQMTG 146 Query: 144 KRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGD---TLYLGTPQTKDSIYKT 200 RA L++ DD+E N T QRE LL + + +I D ++LGTPQ+ +IY+ Sbjct: 147 SRAHLMVFDDVEVPANSATDMQREKLLQLVSESESILVPDDDARIMFLGTPQSTFTIYRK 206 Query: 201 LPSRGFEVRVWCGRIPSVEQEEKYGDTLAPYIKMLIEQGARRTGFGVDGTLGETTDPQRY 260 L R + VW R P KY LAP + +E+ T D R+ Sbjct: 207 LAERSYRPFVWPARYP--RDLSKYEGLLAPQLVADLEKDPELTWKPTD---------TRF 255 Query: 261 DEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMIIHAGDSNSAPDMFSWTADK 320 +E L+E+E G F LQ+MLDT+LSDA + +K D+I+ + A + ++W+AD Sbjct: 256 NELNLMERESAMGRSNFMLQFMLDTSLSDAEKFPLKFQDLIVTPLGAECA-EAYAWSADP 314 Query: 321 RALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDPAGCGGDEISFAIGGAASAYVH 379 R + E++ G+ G R Y P+ I I+PY I+ +DP+G G DE + A+ Y+ Sbjct: 315 RYMRKELNPVGLPGDRFYGPMYIDEGIVPYSETIVSVDPSGRGTDETVAVVLSQANGYIF 374 Query: 380 LFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHGTVTMLFQNALAQRDIAHIGV 439 + F+ G S+E ++ ++ L + ++ +++ESN G G +T LF+ ++Q + Sbjct: 375 VRDMKAFRDGYSDETLSDIVRLGKRYKASKLLVESNFGDGMITELFKRHISQMG-GGMDT 433 Query: 440 RDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECCMSYPRDRRWQYSAFLQLQDI 499 ++R S +KE RII+T+ PV +H+L++ + D ++R +Y Q+ + Sbjct: 434 EEVRASARKEERIIETLEPVMNQHKLIIDPKVWEYDYSSNPDAAPEKRLEYMLGYQMSRM 493 Query: 500 TYDKGCLSKDDRADAIAMLVQ 520 +KG + DDR DA++ VQ Sbjct: 494 CREKGAVKHDDRVDALSQGVQ 514 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 261 bits (666), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 133/340 (39%), Positives = 210/340 (61%), Gaps = 3/340 (0%) Query: 24 LTDMQADIAQYMQHGPRKKMVCAQRGEAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQAS 83 L MQADI +++ +G + +++ A RG AK+TL+A+Y+V+R+I + R+++VS K+A Sbjct: 50 LIRMQADILKFLFYGHKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAE 109 Query: 84 EVATLVIRLIETWDLLCWLRADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQG 143 E+A V+++ D L ++ D GDR S + +++H L+ +K+PSV+C I A +QG Sbjct: 110 EIAGWVVKIFRGLDFLEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQG 169 Query: 144 KRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGDTLYLGTPQTKDSIYKTLPS 203 RAD+++ DD+E+ +N T R L ++K+F +IN GD +YLGTPQ +SIY LP+ Sbjct: 170 ARADIILADDVESMQNARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPA 229 Query: 204 RGFEVRVWCGRIPSVEQEEKYGDTLAPYI-KMLIEQGARRTGFGVDGTLGETTDPQRYDE 262 RG+ VR+W R PSVEQE+ YGD LAP I + + + A R+G+G+DG G P+ YD+ Sbjct: 230 RGYSVRIWTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDD 289 Query: 263 GALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMIIHAGDSNSAPDMFSWTADKRA 322 LIEKE+ G F LQ+ML+T + DA R ++L+++I + + P M +W+ D Sbjct: 290 DVLIEKEISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSIN 349 Query: 323 LYPEV--HDGVLGARLYTPLSIGTEIIPYKHKIMVIDPAG 360 + + + +Y P++ E KIM IDPAG Sbjct: 350 IIGDAPKYGNKPTDFMYRPVARPYEWGAVTRKIMYIDPAG 389 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 255 bits (652), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 168/508 (33%), Positives = 262/508 (51%), Gaps = 24/508 (4%) Query: 25 TDMQADIAQYMQHGPRKKMVCAQRGEAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQASE 84 T Q IA Y+Q GP++ + A RG KS + + +W L D +++I+S +++A Sbjct: 29 TRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGAFVLWTLFNDAEKKIMIISASKERADN 88 Query: 85 VATLVIRLIETWDLLCWLR--ADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQ 142 ++ + +LI L LR +D AR R S+ DV C +APSV VGIT QL Sbjct: 89 MSIFLQKLIIETPWLKHLRPKSDDARWSRISF---DVLCSP---HQAPSVKSVGITGQLT 142 Query: 143 GKRADLLIPDDIETTKNGLTQTQREHLLTISKDFAAINTHGD---TLYLGTPQTKDSIYK 199 G RADL+I DDIE N +T+ RE LL + + +I T D +YLGTPQT ++Y+ Sbjct: 143 GSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILTPKDDSRIMYLGTPQTTFTVYR 202 Query: 200 TLPSRGFEVRVWCGRIPSVEQEEKYGDTLAPYIKMLIEQGARRTGFGVDGTLGETTDPQR 259 L R + VW R P + Y +AP ++ I+ GA G TDP R Sbjct: 203 KLAERAYRPFVWPARYP--KDITPYEGLIAPQLQEDIDNGAES---------GTVTDPDR 251 Query: 260 YDEGALIEKELDFGPEGFALQYMLDTTLSDAMRTRIKLSDMIIHAGDSNSAPDMFSWTAD 319 +D+ L ++E G F LQ+MLDTTLSDA + +K++D++I + + APD W +D Sbjct: 252 FDDDDLQQRESAMGRSNFMLQFMLDTTLSDAEKFPLKMADLVITSVNPTEAPDNVIWCSD 311 Query: 320 KRALYPEVHD-GVLGARLYTPLSIGTEIIPYKHKIMVIDPAGCGGDEISFAIGGAASAYV 378 + + + G+ G Y+P+ + E PY+ I +DP+G G DE + + ++ Sbjct: 312 PQNIIKDAPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRGTDETAACYLSQKNGFL 371 Query: 379 HLFGTGGFQGGVSEENMNRLIDLAEDFEVKDIVIESNMGHGTVTMLFQNALAQRDIAHIG 438 +L ++ G S+ + ++ + + +V+E+N G G V+ LF+ L Q A I Sbjct: 372 YLHEMRAYRDGYSDATLLDILKGCKKYNATTLVVETNFGDGIVSELFKKHLQQTKQA-IF 430 Query: 439 VRDLRNSTQKERRIIDTISPVTRRHRLVVHTSALDMDIECCMSYPRDRRWQYSAFLQLQD 498 V ++R + +KE RIID++ PV +HRL+V +D D P + R Y F Q+ Sbjct: 431 VDEVRANVRKEDRIIDSLEPVLNQHRLIVDRGVIDWDYSSNKDCPPESRLLYMLFYQMSR 490 Query: 499 ITYDKGCLSKDDRADAIAMLVQELNAHL 526 + K + DDR D +A V+ L Sbjct: 491 MCRMKFAVKHDDRLDCLAQGVKYFTDSL 518 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 50.4 bits (119), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 36/194 (18%) Query: 22 FDLTDMQADIAQYMQHGPRKKMVCAQRGEAKSTL-AALYSVWRLIQDQSTRVLIVSGGEK 80 ++LTD Q+ R+++V A RG KST+ + LY +WR+ ++ RVL+ + ++ Sbjct: 39 YELTDFLTQTQQHEDKDNRRRLVLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLVGTNLKR 98 Query: 81 QASEVATLVIRLIE-TW--------------DLLCWLRADPARGDRTSYEGYDVHCDLKP 125 + + + E TW L+ L A R + D L Sbjct: 99 LSRAFIRELRQYFEDTWLQQNVWNVRPHIEGALVPALSASDRRKRNSQRNNVDYDEALAT 158 Query: 126 LE--------------------KAPSVACVGITAQLQGKRADLLIPDDIETTKNGLTQTQ 165 L K P+V V I + G DLLI DDI +N T+ + Sbjct: 159 LTDDTKLIWSMEALQVIRPTVMKEPTVQTVSIGTTVTGDHYDLLILDDIVDFENSKTEDK 218 Query: 166 REHLLTISKDFAAI 179 E++L ++D ++ Sbjct: 219 AENILEWTRDLESV 232 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 49.3 bits (116), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 11/176 (6%) Query: 42 KMVCAQRGEAKSTLAALYSVWRLIQDQSTRVLIVSG----GEKQASEVATLVIRLIETWD 97 K++ R KS + A + W + + +L +S E Q V ++ + Sbjct: 72 KLIMLPRAHLKSHMVATWCAWIITRHPEVTILYISATATLAETQLYAVKNILASSVYNRY 131 Query: 98 LLCWLRADPARGDRTSYEGYDVHCDLKPLEKA----PSVACVGITAQLQGKRADLLIPDD 153 ++ P G R + + D +K ++A G+T G AD+++ DD Sbjct: 132 FPEYIH--PQEGKREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGWHADIIVADD 189 Query: 154 IETTKNGLTQTQREHLLTISKDFAAI-NTHGDTLYLGTPQTKDSIYKTLPSRGFEV 208 + +N T+ RE + S F +I N G T+ GT IY T S+ +++ Sbjct: 190 LVVPENAYTEDGRESVQKKSSQFTSIRNAGGFTMACGTRYHPSDIYATWRSQKYDI 245 >gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640322;genbank:gi:21234401;genbank:GeneID :956064 Length = 535 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 11/163 (6%) Query: 48 RGEAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWLRAD-- 105 R KS A++ W++ ++ + + V E A + I+ I T D L D Sbjct: 71 RDHQKSHCIAVWVCWQIFKNPAVTIAYVCATESLAI-LQLYDIKQILTSDEFTRLSPDMI 129 Query: 106 -PARGDRTSYEGYDVHCDLKPLEKA-----PSVACVGITAQLQGKRADLLIPDDIETTKN 159 P R + + D P+ K P+V G+ + G ++++ DD+ KN Sbjct: 130 EPMEKKRQKWAETAIIVD-HPIRKKERPRDPTVLATGLDSNNIGAHCNIMVKDDVVIDKN 188 Query: 160 GLTQTQREHLLTISKDFAAI-NTHGDTLYLGTPQTKDSIYKTL 201 LT+T R+ + + ++I T G +GT Y+TL Sbjct: 189 SLTETARQKVEAKAGHLSSILTTDGMEFCVGTRYHPKDHYQTL 231 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 31.2 bits (69), Expect = 0.040, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 16/168 (9%) Query: 44 VCAQRGEAKSTLAA-LYSVWRLIQDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWL 102 + A RG AKSTL + ++ +W ++ + LI+ +QA+ + + +E L Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 103 RADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQG-----KRADLLIPDDIETT 157 A R G V + V G +++G R DL+I DD+E Sbjct: 149 FPQGAGKGRVWQVGTIVTAN------DAKVQVFGSGKRMRGLRHGPHRPDLVIGDDLEND 202 Query: 158 KNGLTQTQREHLLT-ISKDFAAINTHGDTL---YLGTPQTKDSIYKTL 201 +N + QR+ L + K ++ + DT+ +GT DS+ L Sbjct: 203 ENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 30.8 bits (68), Expect = 0.044, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 144 KRADLLIPDDIETTKNGLTQTQREHLL-----TISKDFAAINTHGDTLYLGTPQTKDSIY 198 KR DL++ DD++T + L++ Q LL T+ K ++ +YLG D I Sbjct: 204 KRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNRRIIYLGNMYPGDCIL 263 Query: 199 KTLPSRGFEVRVWCGRIPSVEQEEKYGDTLAPYIKMLIEQGARRTGFGV 247 + L + + G I +E E L P + +LI + G+ Sbjct: 264 QMLRKNPEWISLVTGAI--LEDGESLWPELKP-VSVLIREYVHDEALGL 309 >gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218809;genbank:gi:147917326;genbank:Ge neID:5142613 Length = 536 Score = 30.8 bits (68), Expect = 0.044, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 8/109 (7%) Query: 144 KRADLLIPDDIETTKNGLTQTQREHLL-----TISKDFAAINTHGDTLYLGTPQTKDSIY 198 KR DL++ DD++T + L++ Q LL T+ K ++ +YLG D I Sbjct: 204 KRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGSNRRIIYLGNMYPGDCIL 263 Query: 199 KTLPSRGFEVRVWCGRIPSVEQEEKYGDTLAPYIKMLIEQGARRTGFGV 247 + L + + G I +E E L P + +LI + G+ Sbjct: 264 QMLRKNPEWISLVTGAI--LEDGESLWPELKP-VSVLIREYVHDEALGL 309 >gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfWMP4_40 # Family: family:all:543 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762670;genbank:gi:115304378;genbank:GeneI D:5142298 Length = 581 Score = 30.8 bits (68), Expect = 0.047, Method: Compositional matrix adjust. Identities = 13/43 (30%), Positives = 24/43 (55%) Query: 35 MQHGPRKKMVCAQRGEAKSTLAALYSVWRLIQDQSTRVLIVSG 77 ++ P +++ RG KSTL Y +WR+ ++ + R+L S Sbjct: 82 VKQPPTNRLLQMPRGHLKSTLTVGYIMWRIYRNPNIRMLHASN 124 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 30.8 bits (68), Expect = 0.052, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 16/168 (9%) Query: 44 VCAQRGEAKSTLAA-LYSVWRLIQDQSTRVLIVSGGEKQASEVATLVIRLIETWDLLCWL 102 + A RG AKSTL + ++ +W ++ + LI+ +QA+ + + +E L Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 103 RADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQG-----KRADLLIPDDIETT 157 A R G V + V G +++G R DL++ DD+E Sbjct: 149 FPQGAGKGRVWQVGTIVTAN------DAKVQVFGSGKRMRGLRHGPHRPDLVVGDDLEND 202 Query: 158 KNGLTQTQREHLLT-ISKDFAAINTHGDTL---YLGTPQTKDSIYKTL 201 +N + QR+ L + K ++ + DT+ +GT DS+ L Sbjct: 203 ENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 21 GFDLTDMQADIAQYMQ---HGP----RKKMVCAQRGEAKSTLAALYSVWRLIQ-DQSTRV 72 GF++T IA+ ++ H P R ++ E KST+A++Y+V R +Q + + R+ Sbjct: 66 GFNITPALWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARI 125 Query: 73 LIVSGGEKQA 82 ++ G+ A Sbjct: 126 ILACYGQDLA 135 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 29.6 bits (65), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 21 GFDLTDMQADIAQYMQ---HGP----RKKMVCAQRGEAKSTLAALYSVWRLIQ-DQSTRV 72 GF++T IA+ ++ H P R ++ E KST+A++Y+V R +Q + + R+ Sbjct: 64 GFNITPALWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARI 123 Query: 73 LIVSGGEKQA 82 ++ G+ A Sbjct: 124 ILACYGQDLA 133 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 28.9 bits (63), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 141 LQGKRADLLIPDDIETTK-NGLTQTQREHLLTISKDFAAINTHGDTLYLGTPQTKDSIY 198 ++G RA LLI DDI K +G T+ + + + + HG T+ +GT + D IY Sbjct: 177 IEGDRAHLLILDDIIKEKGDGDTEDVLDWIEAVC--VPMVKDHGRTVVIGTRKRPDDIY 233 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 28.1 bits (61), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 15/90 (16%) Query: 7 KNFEDFAYVGMRFLG-------------FDLTDMQADIAQYMQHGPRKKMVCAQRGEAKS 53 K E+F Y+ F G D ++ D + R +VC R KS Sbjct: 33 KWIEEFCYLTGSFAGQPFRLLPWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKS 92 Query: 54 TLAALYSVWRLIQDQ--STRVLIVSGGEKQ 81 T+AA ++ LI D+ + R +I + ++ Sbjct: 93 TIAAAIMLYHLIADRGDAQRQVIAAANDRN 122 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 26.9 bits (58), Expect = 0.64, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 40 RKKMVCAQRGEAKSTLAALYSVWRLIQDQ--STRVLIVSGGEKQ 81 R +VC R KST+AA ++ LI D+ + R +I + ++ Sbjct: 76 RTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQIIAAANDRN 119 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 291 MRTRIKLSDMIIHAGDSNSAPDMFSWTADKRALYPEVHDGVLGARLYTP 339 M R L + I ++G + + PD S+ A ++PE + + RLY P Sbjct: 192 MGWRGGLKEGIPNSGINQTHPDFESFHAASWDVWPERREWYMERRLYIP 240 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 291 MRTRIKLSDMIIHAGDSNSAPDMFSWTADKRALYPEVHDGVLGARLYTP 339 M R L + I ++G + + PD S+ A ++PE + + RLY P Sbjct: 192 MGWRGGLKEGIPNSGVNQTHPDFESFHAASWDVWPERREWYMERRLYIP 240 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 50 EAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQASEVATLVIR-LIETW-----DLLCWLR 103 E KSTLAA+ + R +Q R +I++ +E + +R IET+ D L L Sbjct: 118 EGKSTLAAVATPLRALQHNPHRKIILATYALDLAETHSRTMREWIETYGTDVVDPLTGLP 177 Query: 104 ADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQGKRADLLIPDD 153 + G + + V + VA GI ++L G ADL+I DD Sbjct: 178 VEDKIGLKLARGANKVTAWSVAGGRGGLVAA-GIGSRLTGMPADLMIIDD 226 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 50 EAKSTLAALYSVWRLIQDQSTRVLIVSGGEKQASEVATLVIR-LIETW-----DLLCWLR 103 E KSTLAA+ + R +Q R +I++ +E + +R IET+ D L L Sbjct: 118 EGKSTLAAVATPLRALQHNPHRKIILATYALDLAETHSRTMREWIETYGTDVVDPLTGLP 177 Query: 104 ADPARGDRTSYEGYDVHCDLKPLEKAPSVACVGITAQLQGKRADLLIPDD 153 + G + + V + VA GI ++L G ADL+I DD Sbjct: 178 VEDKIGLKLARGANKVTAWSVAGGRGGLVAA-GIGSRLTGMPADLMIIDD 226 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 24.3 bits (51), Expect = 4.3, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 94 ETWDLLCWLRADPARGDRTSYEG 116 + W+ CW A+PA G S+E Sbjct: 591 DPWNEECWPHANPALGRFLSWEA 613 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 24.3 bits (51), Expect = 4.6, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 94 ETWDLLCWLRADPARGDRTSYEG 116 + W+ CW A+PA G S+E Sbjct: 260 DPWNEECWPHANPALGRFLSWEA 282 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.136 0.403 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 254,738 Number of Sequences: 514 Number of extensions: 11687 Number of successful extensions: 143 Number of sequences better than 100.0: 37 Number of HSP's better than 100.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 41 length of query: 601 length of database: 206,069 effective HSP length: 77 effective length of query: 524 effective length of database: 166,491 effective search space: 87241284 effective search space used: 87241284 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)