BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_012635.1_cdsid_YP_002854122.1 [gene=17] [protein=large terminase protein] [protein_id=YP_002854122.1] [location=96146..97978] (610 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 1268 0.0 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 1264 0.0 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 1155 0.0 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 1065 0.0 gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: ter... 879 0.0 gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp... 877 0.0 gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp... 843 0.0 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 824 0.0 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 823 0.0 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 793 0.0 gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: g... 745 0.0 gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: ter... 622 e-180 gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: t... 363 e-102 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 354 2e-99 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 342 1e-95 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 329 7e-92 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 154 2e-39 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 72 2e-14 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 71 3e-14 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 45 2e-06 gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 44 6e-06 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 44 6e-06 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 44 6e-06 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 44 6e-06 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 44 6e-06 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 44 6e-06 gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bce... 42 2e-05 gi|20547|lcl|protein:vir:105155 Length: 580 # NCBI annotation: c... 42 3e-05 gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: te... 35 0.003 gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: lar... 33 0.010 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 31 0.049 gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF... 30 0.060 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 29 0.13 gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 29 0.14 gi|8126|lcl|protein:vir:102661 Length: 568 # NCBI annotation: te... 27 0.52 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 27 0.57 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 27 0.75 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 27 0.75 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 27 0.76 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 27 0.76 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 27 0.76 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 27 0.76 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 27 0.78 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 26 1.1 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 25 1.8 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 25 1.8 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 25 2.9 gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp1... 25 3.5 gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6... 25 3.8 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 24 4.7 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 24 6.2 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 24 6.2 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 24 6.4 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 23 6.9 gi|8220|lcl|protein:vir:101493 Length: 588 # NCBI annotation: gp... 23 7.3 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 23 7.3 gi|9070|lcl|protein:vir:102238 Length: 588 # NCBI annotation: gp... 23 7.3 gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: te... 23 8.8 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 1268 bits (3281), Expect = 0.0, Method: Compositional matrix adjust. Identities = 605/610 (99%), Positives = 608/610 (99%) Query: 1 MEQPINALNDFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHK 60 MEQPINALNDFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHK Sbjct: 1 MEQPINALNDFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHK 60 Query: 61 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF 120 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF Sbjct: 61 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF 120 Query: 121 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 180 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF Sbjct: 121 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 180 Query: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS 240 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS Sbjct: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS 240 Query: 241 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA Sbjct: 241 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 Query: 301 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTS 360 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTS Sbjct: 301 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTS 360 Query: 361 GTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTD 420 GTLISGMKLA+MDFIEVTPDDHGFHRFK PEPDRKYIATLDCSEGRGQDYHALHIIDVTD Sbjct: 361 GTLISGMKLAIMDFIEVTPDDHGFHRFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTD 420 Query: 421 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI 480 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI Sbjct: 421 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI 480 Query: 481 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH 540 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH Sbjct: 481 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH 540 Query: 541 DDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSVHSAEY 600 DDLVMSLVIFGWLSTQSKFIDYADK+DMRLASEVFSKELQDM D+YAPVIFVDSVHSAEY Sbjct: 541 DDLVMSLVIFGWLSTQSKFIDYADKDDMRLASEVFSKELQDMSDDYAPVIFVDSVHSAEY 600 Query: 601 VPVSHGMSMV 610 VPVSHGMSMV Sbjct: 601 VPVSHGMSMV 610 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 1264 bits (3270), Expect = 0.0, Method: Compositional matrix adjust. Identities = 603/610 (98%), Positives = 607/610 (99%) Query: 1 MEQPINALNDFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHK 60 MEQPIN LNDFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHK Sbjct: 1 MEQPINVLNDFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHK 60 Query: 61 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF 120 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF Sbjct: 61 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF 120 Query: 121 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 180 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF Sbjct: 121 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 180 Query: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS 240 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS Sbjct: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS 240 Query: 241 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA Sbjct: 241 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 Query: 301 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTS 360 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGS+LAQFRQEHTAAFEGTS Sbjct: 301 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTS 360 Query: 361 GTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTD 420 GTLISGMKLAVMDFIEVTPDDHGFH+FK PEPDRKYIATLDCSEGRGQDYHALHIIDVTD Sbjct: 361 GTLISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTD 420 Query: 421 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI 480 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI Sbjct: 421 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI 480 Query: 481 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH 540 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH Sbjct: 481 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH 540 Query: 541 DDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSVHSAEY 600 DDLVMSLVIFGWLSTQSKFIDYADK+DMRLASEVFSKELQDM D+YAPVIFVDSVHSAEY Sbjct: 541 DDLVMSLVIFGWLSTQSKFIDYADKDDMRLASEVFSKELQDMSDDYAPVIFVDSVHSAEY 600 Query: 601 VPVSHGMSMV 610 VPVSHGMSMV Sbjct: 601 VPVSHGMSMV 610 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/611 (90%), Positives = 576/611 (94%), Gaps = 1/611 (0%) Query: 1 MEQPINALNDFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHK 60 MEQPINALND HPLNE K++I P LAERK+EDGIHWIKSQWDGKWYPEKFSDYLR++K Sbjct: 1 MEQPINALNDNHPLNEGDKVVILPPHLAERKEEDGIHWIKSQWDGKWYPEKFSDYLRINK 60 Query: 61 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF 120 IVKIPNNSDKPELFQTYKDKNNKR+RYMGLPNLKRANIKTQWT EMV EWKKCRDDIVYF Sbjct: 61 IVKIPNNSDKPELFQTYKDKNNKRTRYMGLPNLKRANIKTQWTYEMVAEWKKCRDDIVYF 120 Query: 121 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 180 AETYCAITHIDYG IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF Sbjct: 121 AETYCAITHIDYGTIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 180 Query: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS 240 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSI+LDNGSSIGAYASS Sbjct: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIQLDNGSSIGAYASS 240 Query: 241 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 PDAVRGNSFAMIYIDECAFIPNF DSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA Sbjct: 241 PDAVRGNSFAMIYIDECAFIPNFIDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 Query: 301 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTS 360 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWS QTI+ S+L QFRQEHTAAFEGTS Sbjct: 301 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSKQTISASSLTQFRQEHTAAFEGTS 360 Query: 361 GTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTD 420 GTLISGMKLA++D+IEVTPD HGFH+FK PE KYIATLDCSEGRGQDYHA+HIIDVT Sbjct: 361 GTLISGMKLAILDYIEVTPDSHGFHQFKKPEEGHKYIATLDCSEGRGQDYHAMHIIDVTT 420 Query: 421 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI 480 D WEQVGVLHSNTISHLILPDIV +YL+EYNECP+YIELNSTGVSVAKSLYMDLEYE VI Sbjct: 421 DKWEQVGVLHSNTISHLILPDIVFKYLMEYNECPIYIELNSTGVSVAKSLYMDLEYENVI 480 Query: 481 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH 540 CDS DLGMKQ++RTK VGCSTLKDLIEKDKL I+HRATIQEFRTFSEKGVSWAAEEGYH Sbjct: 481 CDSMNDLGMKQSRRTKPVGCSTLKDLIEKDKLKINHRATIQEFRTFSEKGVSWAAEEGYH 540 Query: 541 DDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSV-HSAE 599 DDLVM LVIFGWLSTQ KF DYADK+DMRLASEVFS+ELQDM D+YAPVIFVD +SAE Sbjct: 541 DDLVMGLVIFGWLSTQQKFADYADKDDMRLASEVFSRELQDMNDDYAPVIFVDCASNSAE 600 Query: 600 YVPVSHGMSMV 610 Y P +HG+SMV Sbjct: 601 YNPSAHGLSMV 611 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 1065 bits (2753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/611 (82%), Positives = 551/611 (90%), Gaps = 1/611 (0%) Query: 1 MEQPINALNDFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHK 60 MEQP+N L+D HPLNE I+IK P ERK E+GI+WIKSQWD KWYPEKFSDYLR+HK Sbjct: 1 MEQPVNVLSDDHPLNEGKTIVIKPPGSLERKTEEGINWIKSQWDDKWYPEKFSDYLRIHK 60 Query: 61 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF 120 IVKIPNN D+P+ FQT+KDK NKR+RYMGLPNLKRANIKTQWTREMV EWKKCRDDIVYF Sbjct: 61 IVKIPNNGDRPDEFQTFKDKMNKRTRYMGLPNLKRANIKTQWTREMVSEWKKCRDDIVYF 120 Query: 121 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 180 AETYCAITHIDYG IKVQLRDYQRDMLKIMS RMT CNLSRQLGKTTVVAIFLAHFVCF Sbjct: 121 AETYCAITHIDYGTIKVQLRDYQRDMLKIMSKNRMTTCNLSRQLGKTTVVAIFLAHFVCF 180 Query: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS 240 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS Sbjct: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS 240 Query: 241 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 PDAVRGNSFAMIYIDECAFIPNF DSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA Sbjct: 241 PDAVRGNSFAMIYIDECAFIPNFLDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 Query: 301 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTS 360 AVEGKSGF PYTAIWNSVKERLYND DIFDDGW+WS QTI+ S+LAQFRQEH A F+GTS Sbjct: 301 AVEGKSGFAPYTAIWNSVKERLYNDADIFDDGWEWSSQTISASSLAQFRQEHCAEFQGTS 360 Query: 361 GTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTD 420 GTLISGMKLA+MD+ EV P++ F+RF P+P KYIA+LDCSEGRGQDYHALHIIDVT Sbjct: 361 GTLISGMKLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHIIDVTT 420 Query: 421 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI 480 D WEQV VLHSN ISH+ILPDIV +YL+EYNE PVYIELNSTGVSVAKSLYMDLEYE VI Sbjct: 421 DEWEQVAVLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYMDLEYENVI 480 Query: 481 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH 540 CDS DLGMKQT+RTK VGCSTLKDLIEKDKL ++H+ TI EFRTFS+ +SWAAE+G+H Sbjct: 481 CDSMQDLGMKQTRRTKPVGCSTLKDLIEKDKLKLNHKQTIMEFRTFSQNKLSWAAEDGFH 540 Query: 541 DDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSV-HSAE 599 DDLVMSLVIF WL+TQ KF D+ D+++MRLASEVFS+EL+DM +EY PV+FVD+ +S E Sbjct: 541 DDLVMSLVIFAWLTTQQKFADFIDRDEMRLASEVFSRELEDMNEEYNPVVFVDAGDNSYE 600 Query: 600 YVPVSHGMSMV 610 Y P++HG+S + Sbjct: 601 YSPLNHGISFI 611 >gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891724;genbank:gi:33620526;genbank:GeneID :1725332 Length = 607 Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/610 (69%), Positives = 501/610 (82%), Gaps = 9/610 (1%) Query: 3 QPINAL-NDFHPLNEAGKILIKHPSLAERK-DEDGIHWIKSQWDGKWYPEKFSDYLRLHK 60 + INA+ D HPL+ A HPS E K D +GI WI S+ D KWYP+KFSDYL+L++ Sbjct: 5 EGINAMATDEHPLHLA------HPSTLETKIDSNGIEWILSKHDDKWYPKKFSDYLKLNR 58 Query: 61 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF 120 KI S P ++ +KD +N R+RYM L NL+RANIKTQ+T EM+ EWK+CR DIVYF Sbjct: 59 PQKIRMQSTDPTNYKFFKDSDNIRTRYMRLKNLRRANIKTQYTPEMIAEWKRCRKDIVYF 118 Query: 121 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 180 AETYCAITHIDYG IKVQLRDYQ+DMLKIM RM+ LSRQLGKTT VAIFLAH+VCF Sbjct: 119 AETYCAITHIDYGTIKVQLRDYQKDMLKIMHENRMSAHKLSRQLGKTTAVAIFLAHYVCF 178 Query: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS 240 NKDKAVGILAHKGSM+ EVL+RTKQAIELLPDFLQPGIVEWNK SI L+NGSSIGAYASS Sbjct: 179 NKDKAVGILAHKGSMAVEVLERTKQAIELLPDFLQPGIVEWNKKSIVLENGSSIGAYASS 238 Query: 241 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 PDAVRGNSF+ IYIDECAFI N+ D +LAIQPVISSGR SK+I+TTTPNGLNHFYDIW + Sbjct: 239 PDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPNGLNHFYDIWQS 298 Query: 301 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTS 360 A++GKSG+ PY A+W+SVKERLYN DIFDDG++WS Q I GS+L QF QEH A F G+S Sbjct: 299 AIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSS 358 Query: 361 GTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTD 420 GTLI L+ + FI+V +D+GF++F+ P+ RKY+ATLDCSEGRGQDYHAL IID+T+ Sbjct: 359 GTLIRATTLSRLSFIDVV-NDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITE 417 Query: 421 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI 480 ++QV V HSNT SH ILPDIV +YL+ YNECPVYIELNSTGVS+AKSL MDLEY+ +I Sbjct: 418 FPYKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNII 477 Query: 481 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH 540 CDS+ DLGMKQ+KR+KA+GCS LKDLIEKDKLII+H+ TIQE RTFSEKGVSWAAEEG+H Sbjct: 478 CDSFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFSEKGVSWAAEEGFH 537 Query: 541 DDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSVHSAEY 600 DDLVMSLVIFGWL+TQ KF +YA K++MR+ASE+F KEL ++G+EYAPV+ D + E Sbjct: 538 DDLVMSLVIFGWLTTQEKFAEYAGKDEMRIASEIFRKELDELGEEYAPVVIYDGANGIEE 597 Query: 601 VPVSHGMSMV 610 G++M+ Sbjct: 598 YRPREGLTMI 607 >gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469498;genbank:gi:157311455;genbank:Ge neID:5602125 Length = 607 Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/610 (69%), Positives = 500/610 (81%), Gaps = 9/610 (1%) Query: 3 QPINAL-NDFHPLNEAGKILIKHPSLAERK-DEDGIHWIKSQWDGKWYPEKFSDYLRLHK 60 + INA+ D HPL+ A HPS E K D +GI WI S+ D KWYP+KFSDYL+L++ Sbjct: 5 EGINAMATDEHPLHLA------HPSTLETKIDSNGIEWILSKHDDKWYPKKFSDYLKLNR 58 Query: 61 IVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYF 120 KI S P ++ +KD +N R+RYM L NL+RANIKTQ+T EM+ EWK+CR DIVYF Sbjct: 59 PQKIRMQSTDPTNYKVFKDSDNIRTRYMRLKNLRRANIKTQYTPEMIAEWKRCRKDIVYF 118 Query: 121 AETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF 180 AETYCAITHIDYG IKVQLRDYQ+DMLKIM RM+ LSRQLGKTT VAIFLAH+VCF Sbjct: 119 AETYCAITHIDYGTIKVQLRDYQKDMLKIMHENRMSAHKLSRQLGKTTAVAIFLAHYVCF 178 Query: 181 NKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASS 240 NKDKAVGILAHKGSM+ EVL+RTKQAIELLPDFLQPGIVEWNK SI L+NGSSIGAYASS Sbjct: 179 NKDKAVGILAHKGSMAVEVLERTKQAIELLPDFLQPGIVEWNKKSIVLENGSSIGAYASS 238 Query: 241 PDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTA 300 PDAVRGNSF+ IYIDECAFI N+ D +LAIQPVISSGR SK+I+TTTPNGLNHFYDIW + Sbjct: 239 PDAVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPNGLNHFYDIWQS 298 Query: 301 AVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTS 360 A++GKSG+ PY A+W+SVKERLYN DIFDDG++WS Q I GS+L QF QEH A F G+S Sbjct: 299 AIDGKSGYVPYEAVWHSVKERLYNKADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSS 358 Query: 361 GTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTD 420 GTLI L+ + FI+V +D+GF++F+ P+ RKY+ATLDCSEGRGQDYHAL IID+T+ Sbjct: 359 GTLIRATTLSRLSFIDVV-NDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITE 417 Query: 421 DVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI 480 ++ V V HSNT SH ILPDIV +YL+ YNECPVYIELNSTGVS+AKSL MDLEY+ +I Sbjct: 418 FPYKPVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNII 477 Query: 481 CDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYH 540 CDS+ DLGMKQ+KR+KA+GCS LKDLIEKDKLII+H+ TIQE RTFSEKGVSWAAEEG+H Sbjct: 478 CDSFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFSEKGVSWAAEEGFH 537 Query: 541 DDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSVHSAEY 600 DDLVMSLVIFGWL+TQ KF +YA K++MR+ASE+F KEL ++G+EYAPV+ D + E Sbjct: 538 DDLVMSLVIFGWLTTQEKFAEYAGKDEMRIASEIFRKELDELGEEYAPVVIYDGANGIEE 597 Query: 601 VPVSHGMSMV 610 G++M+ Sbjct: 598 YRPREGLTMI 607 >gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp17 terminase subunit, nuclease and ATPase # Family: family:all:147 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID :3416364 Length = 609 Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/596 (69%), Positives = 481/596 (80%), Gaps = 8/596 (1%) Query: 20 ILIKHPSLAERK-DEDGIHWIKSQWDGKWYPEKFSDYLRLHKIVKIPNNSDKPELFQTYK 78 I + HP +RK DE G+ W++S+ D KWYP FSDYL+++ I K+ P F TYK Sbjct: 17 IGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIHKVELQGKNPAEFATYK 76 Query: 79 DKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQ 138 +K+NK+SRY G PNLKRA ++T+WT+EM+ EW KCRDDIVYFAETYCAITHIDYG IKVQ Sbjct: 77 NKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQ 136 Query: 139 LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE 198 LRDYQ++ML M RM CNLSRQLGKTTVVAIFLAHFVCFN+DK VG+LAHK SMSAE Sbjct: 137 LRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAE 196 Query: 199 VLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECA 258 VLDRTKQAIELLPDFLQPGIVEWNKGSIELDN IGA+ASSPDAVRGNSFAMIYIDECA Sbjct: 197 VLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECA 256 Query: 259 FIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSV 318 FIPNF D+WLAIQPVISSGR+SKI+ITTTPNGLNHFYDIW AAVEGKSGF PYTAIW SV Sbjct: 257 FIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSV 316 Query: 319 KERLYNDED--IFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIE 376 KERLY D D +FDDG+ WS + I GS+ F QEH A F GT+GTLISG KL+ M +I+ Sbjct: 317 KERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWID 376 Query: 377 VTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISH 436 + + F+++K PE KY+A LD +EGRGQDYHA+HIID+T +EQV V HSN SH Sbjct: 377 IDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSH 436 Query: 437 LILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSYTDLGMKQTKRTK 496 LILPDI++RYL YNE +YIELNSTG SVAKSL+ +LEYE VICDSY DLGMKQTKR+K Sbjct: 437 LILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSYNDLGMKQTKRSK 496 Query: 497 AVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSLVIFGWLSTQ 556 A+GCSTLKDLIEKDKLII+++ TI EFRTFSEKGVSWAAEEG+HDDLVMSL FGWL+TQ Sbjct: 497 AIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVMSLACFGWLTTQ 556 Query: 557 SKFIDYADKNDMRLASEVFSKELQDM-GDEYAPVIFVDSVHSAEYVPV-SHGMSMV 610 KF ++ +K+D+RLA+EVF++E + + D PVI E + V SHG+S + Sbjct: 557 LKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTS---GDETISVGSHGISFI 609 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/616 (63%), Positives = 487/616 (79%), Gaps = 24/616 (3%) Query: 10 DFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHKIVKIPNNSD 69 D HPL + HPS +R+ + W+ S D KWYP F Y++L + ++ SD Sbjct: 7 DDHPLG------MPHPSTLKREMREDGEWVLSNQDDKWYPSTFDRYMKLQGVKRVKIQSD 60 Query: 70 KPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITH 129 P +F+T+KDK NKR+RY+GLPNLKRANIK +WT+EM+ E K+C++DIVYFAE YC I H Sbjct: 61 DPSMFRTFKDKTNKRTRYLGLPNLKRANIKIKWTKEMLAERKRCKEDIVYFAENYCCIEH 120 Query: 130 IDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGIL 189 IDYG+I+VQLRDYQ+DML+IM+ R+ NLSRQLGKTTVVAIFLAHFVCFN K VGIL Sbjct: 121 IDYGIIRVQLRDYQKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGIL 180 Query: 190 AHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSF 249 AHK SMSAEVL RTKQA+ELLPDFLQPGIVEWNKGSI L NG +IGA++SSPDAVRGNSF Sbjct: 181 AHKASMSAEVLHRTKQALELLPDFLQPGIVEWNKGSITLGNGCAIGAFSSSPDAVRGNSF 240 Query: 250 AMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVE------ 303 A+IY+DE AFIPNF D+W+AIQPVISSGRRSKI++TTTPNGLNH+YDIWTAA+ Sbjct: 241 ALIYVDEVAFIPNFTDAWMAIQPVISSGRRSKILMTTTPNGLNHWYDIWTAAITPNSSGD 300 Query: 304 -GKSGFEPYTAIWNSVKERLYND-------EDIFDDGWQWSIQTINGSTLAQFRQEHTAA 355 KSGF PYTA W+SVKERLY+D + FDDG+ WS +TI GS L F+QEH A Sbjct: 301 GSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIAGSALDAFQQEHNTA 360 Query: 356 FEGTSGTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHI 415 F+GTSGTLI+G KL+ +++I++ P D+ F F+ P+ RKYIATLD +EGRGQDYHA+HI Sbjct: 361 FQGTSGTLINGTKLSKLNWIDIPPQDN-FTMFEEPKEGRKYIATLDSAEGRGQDYHAMHI 419 Query: 416 IDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLE 475 D+T+ ++QV V HSNT SHLILPD++++YL Y + +YIELNSTGVS+AKSLY +L+ Sbjct: 420 FDITEFPYKQVAVYHSNTTSHLILPDVLLKYLNMYFQPYIYIELNSTGVSIAKSLYSELD 479 Query: 476 YEGVICDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAA 535 YE VICDSY DLG+KQTKR+KA+GCSTLKDLIEKDKLI++H+ +I E RTFSEKGVSWAA Sbjct: 480 YENVICDSYQDLGLKQTKRSKAIGCSTLKDLIEKDKLILNHKKSIMELRTFSEKGVSWAA 539 Query: 536 EEGYHDDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSV 595 EEG+HDDLVMSLVIF WL+TQ +F D+ + +DMRLA+EVF KE++++ D+Y P++ VD Sbjct: 540 EEGFHDDLVMSLVIFAWLTTQERFSDFTENDDMRLANEVFRKEMEELNDDYMPMVIVDD- 598 Query: 596 HSAEYVPVSH-GMSMV 610 + V+H GMS V Sbjct: 599 -GEDTFEVTHKGMSFV 613 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/616 (63%), Positives = 487/616 (79%), Gaps = 24/616 (3%) Query: 10 DFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHKIVKIPNNSD 69 D HPL + HPS +R+ + W+ S D KWYP F Y++L + ++ SD Sbjct: 7 DDHPLG------MPHPSTLKREMREDGEWVLSNHDDKWYPSTFDRYMKLQGVKRVKIQSD 60 Query: 70 KPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITH 129 P +F+T+KDK NKR+RY+GLPNLKRANIK +WT+EM+ E K+C++DIVYFAE YC I H Sbjct: 61 DPSMFRTFKDKTNKRTRYLGLPNLKRANIKIKWTKEMLAERKRCKEDIVYFAENYCCIEH 120 Query: 130 IDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGIL 189 IDYG+I+VQLRDYQ+DML+IM+ R+ NLSRQLGKTTVVAIFLAHFVCFN K VGIL Sbjct: 121 IDYGIIRVQLRDYQKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGIL 180 Query: 190 AHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSF 249 AHK SMSAEVL RTKQA+ELLPDFLQPGIVEWNKGSI L NG +IGA++SSPDAVRGNSF Sbjct: 181 AHKASMSAEVLHRTKQALELLPDFLQPGIVEWNKGSITLGNGCAIGAFSSSPDAVRGNSF 240 Query: 250 AMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVE------ 303 A+IY+DE AFIPNF D+W+AIQPVISSGRRSKI++TTTPNGLNH+YDIWTAA+ Sbjct: 241 ALIYVDEVAFIPNFTDAWMAIQPVISSGRRSKILMTTTPNGLNHWYDIWTAAITPNSSGD 300 Query: 304 -GKSGFEPYTAIWNSVKERLYND-------EDIFDDGWQWSIQTINGSTLAQFRQEHTAA 355 KSGF PYTA W+SVKERLY+D + FDDG+ WS +TI GS L F+QEH A Sbjct: 301 GSKSGFVPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIAGSALDAFQQEHNTA 360 Query: 356 FEGTSGTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHI 415 F+GTSGTLI+G KL+ +++I++ P D+ F F+ P+ RKYIATLD +EGRGQDYHA+HI Sbjct: 361 FQGTSGTLINGTKLSKLNWIDIPPQDN-FTMFEEPKEGRKYIATLDSAEGRGQDYHAMHI 419 Query: 416 IDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLE 475 D+T+ ++QV V HSNT SHLILPD++++YL Y + +YIELNSTGVS+AKSLY +L+ Sbjct: 420 FDITEFPYKQVAVYHSNTTSHLILPDVLLKYLNMYFQPYIYIELNSTGVSIAKSLYSELD 479 Query: 476 YEGVICDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAA 535 YE VICDSY DLG+KQTKR+KA+GCSTLKDLIEKDKLI++H+ +I E RTFSEKGVSWAA Sbjct: 480 YENVICDSYQDLGLKQTKRSKAIGCSTLKDLIEKDKLILNHKKSIMELRTFSEKGVSWAA 539 Query: 536 EEGYHDDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSV 595 EEG+HDDLVMSLVIF WL+TQ +F D+ + +DMRLA+EVF KE++++ D+Y P++ VD Sbjct: 540 EEGFHDDLVMSLVIFAWLTTQERFSDFTENDDMRLANEVFRKEMEELNDDYMPMVIVDD- 598 Query: 596 HSAEYVPVSH-GMSMV 610 + V+H GMS V Sbjct: 599 -GEDTFEVTHKGMSFV 613 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/620 (62%), Positives = 472/620 (76%), Gaps = 22/620 (3%) Query: 5 INALNDFHPLNEAGKILIKHPSLAERKDEDGIHWIKSQWDGKWYPEKFSDYLRLHKIVKI 64 +N HPL + HPS +R+ + WI S D KWYP F YL+ + ++ Sbjct: 1 MNIFESDHPLQ------MPHPSTLKREMREDGEWILSNHDDKWYPSTFDRYLKSQGVKRV 54 Query: 65 PNNSDKPELFQTYKDKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETY 124 +D P +F+T+KDK NKRSRY GLPNLKRANIK +WT+EM+ E K+C++DIVYFAE Y Sbjct: 55 KIQADDPSMFRTFKDKTNKRSRYNGLPNLKRANIKIKWTKEMLAERKRCKEDIVYFAENY 114 Query: 125 CAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDK 184 C I HIDYG+I+VQLRDYQ+DML+IM+ R+ NLSRQLGKTTVVAIFLAHFVCFN K Sbjct: 115 CCIEHIDYGIIRVQLRDYQKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAK 174 Query: 185 AVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAV 244 VGILAHK SMSAEVL RTKQA+ELLPDFLQPGIVEWNKGSI L NG +IGA++SSPDAV Sbjct: 175 NVGILAHKASMSAEVLHRTKQALELLPDFLQPGIVEWNKGSITLGNGCAIGAFSSSPDAV 234 Query: 245 RGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVE- 303 RGNSFA+IYIDE AFIPNF+D+WLAIQPVISSGR SKI++TTTPNGLNH+YDIWTAA+ Sbjct: 235 RGNSFALIYIDEVAFIPNFNDAWLAIQPVISSGRHSKILMTTTPNGLNHWYDIWTAAITP 294 Query: 304 ------GKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGS-------TLAQFRQ 350 KSGF PYTA W+SVKER+Y+D D I G L F+Q Sbjct: 295 NSDGSGSKSGFVPYTATWSSVKERMYSDGSKTDGAIHILTTDILGQPRQSPVLALRAFQQ 354 Query: 351 EHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDY 410 EH AF+GTSGTLI+G KL+ M + EV D+ F FK P KYIATLD +EGRGQDY Sbjct: 355 EHNTAFQGTSGTLINGFKLSKMTWKEVPASDN-FTMFKEPIEGHKYIATLDSAEGRGQDY 413 Query: 411 HALHIIDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSL 470 HA+HI D+T+ +EQV V HSNT SHLILPD++++YL Y + +YIELN+TGVS+AKSL Sbjct: 414 HAMHIYDITEFPYEQVAVYHSNTTSHLILPDVLLKYLNMYYQPYIYIELNATGVSIAKSL 473 Query: 471 YMDLEYEGVICDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKG 530 Y +LEYE +ICDSY DLGMKQTKR+KA+GCSTLKDLIEK+KL+++H+ TI E RTFSEKG Sbjct: 474 YSELEYENIICDSYNDLGMKQTKRSKAIGCSTLKDLIEKEKLVLYHKGTIMELRTFSEKG 533 Query: 531 VSWAAEEGYHDDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVI 590 VSWAAE+G+HDDLVMSLVIF WL+TQ +F D+ +++DMRLA+E+F +E++++ D+Y PV+ Sbjct: 534 VSWAAEDGFHDDLVMSLVIFAWLTTQPRFSDFTERDDMRLANEIFRQEMENLYDDYTPVV 593 Query: 591 FVDSVHSAEYVPVSHGMSMV 610 VDS V S+GMS V Sbjct: 594 IVDSGEETFEVG-SNGMSFV 612 >gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944105;genbank:gi:38640149;genbank:GeneID :2658038 Length = 633 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/556 (63%), Positives = 441/556 (79%), Gaps = 2/556 (0%) Query: 38 WIKSQWDGKWYPEKFSDYLRLHKIVKIPNNSDKPELFQTYKDKNNKRSRYMGLPNLKRAN 97 + KSQ DG+WYPE + Y L ++ K+ P F+++KD+ NKR+RY+GLPNLKRAN Sbjct: 62 YYKSQHDGRWYPETYDIYSELKRVQKMNLQGKDPSDFKSFKDRFNKRTRYLGLPNLKRAN 121 Query: 98 IKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTV 157 + T+WTREMVEEWK+CRDDIVYFAETYC+I HID+GVIKVQLRDYQ+DML+IM+S+RM++ Sbjct: 122 VPTKWTREMVEEWKRCRDDIVYFAETYCSIIHIDWGVIKVQLRDYQKDMLRIMASERMSM 181 Query: 158 CNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPG 217 NL RQLGKTT AIFL HFV FN+ KAVG+LAHKG MS EVL+RTKQ+IELLPDFLQPG Sbjct: 182 HNLPRQLGKTTATAIFLTHFVVFNEAKAVGVLAHKGDMSKEVLERTKQSIELLPDFLQPG 241 Query: 218 IVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSG 277 IVEWNKG+IEL+NG SIGAYASSPDAVRGNSFA+IY+DECAFI F D+W AI PVISSG Sbjct: 242 IVEWNKGNIELENGCSIGAYASSPDAVRGNSFALIYVDECAFIEGFEDTWKAILPVISSG 301 Query: 278 RRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSI 337 R+S+II+T+TPNG+NH+YD+W +++ GF+PYT W +VKERLY+ D +DDG++W+ Sbjct: 302 RQSRIILTSTPNGINHWYDLWEVSLKSDKGFKPYTTTWITVKERLYDGSDAYDDGFEWAS 361 Query: 338 QTINGSTLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYI 397 + IN S++ F+QEH F GTSGTLI+G KL+ M + EV DD+ F++ + P KYI Sbjct: 362 KQINSSSVEAFQQEHLCRFMGTSGTLINGFKLSKMTWKEVIADDN-FYQIEKPVEGNKYI 420 Query: 398 ATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYI 457 AT+D +EGRGQDY + IIDVT + QV V HSN IS L+LP ++MRY +EYN VYI Sbjct: 421 ATVDPAEGRGQDYSTIQIIDVTSYPYRQVAVYHSNKISPLLLPSVIMRYAMEYNNAWVYI 480 Query: 458 ELNSTGVSVAKSLYMDLEYEGVICDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHR 517 ELNS G VAKSL++DLEYE VI DS DLGMKQTK TKAVGCSTLKDLIEKDKLI+ H+ Sbjct: 481 ELNSIGNMVAKSLFIDLEYENVIVDSSKDLGMKQTKVTKAVGCSTLKDLIEKDKLIVSHK 540 Query: 518 ATIQEFRTFSEKGVSWAAEEGYHDDLVMSLVIFGWLSTQSKFIDYADKNDMRLASEVFSK 577 TIQEFRTF EKGVSWAA++G+HDDLVMSL IF +L+TQ +F D+ D + ++VF Sbjct: 541 GTIQEFRTFVEKGVSWAAQDGFHDDLVMSLCIFAYLTTQERFGDFIDAT-RNIGADVFQS 599 Query: 578 ELQDMGDEYAPVIFVD 593 E+++M +++ +D Sbjct: 600 EMEEMLEDFCVGAIID 615 >gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899601;genbank:gi:34419588;genbank:GeneID :2546011 Length = 600 Score = 622 bits (1604), Expect = e-180, Method: Compositional matrix adjust. Identities = 307/570 (53%), Positives = 396/570 (69%), Gaps = 13/570 (2%) Query: 34 DGIHWIKSQWDGKWYPEKFSDYL---RLHKIVKIPNNSDKPELFQTYKDKNNKRSRYMGL 90 +GI +++S D +WYP D+ R+ K K+ S P F+TYKDK N+RSRYM + Sbjct: 14 NGIKYVQSNEDMQWYPRYLDDWKVLNRMDKAHKLRIQSTDPSDFKTYKDKGNRRSRYMNI 73 Query: 91 PNLKRANIKTQWTREMVE---EWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDYQRDML 147 PNL+RAN ++ + E E++KCRDDIVYFAE YC+I HID G IK+ R YQ++ML Sbjct: 74 PNLRRANAPIRFGAPLSEIKAEFQKCRDDIVYFAENYCSIVHIDLGNIKMVPRPYQKEML 133 Query: 148 KIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 207 ++ R ++ L RQLGKTT++ IFLAH++ FN+DK GILAHKGSMS EVL+R K I Sbjct: 134 EVADRSRFSIFLLPRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEVLERVKNVI 193 Query: 208 ELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFHDSW 267 E LPDFLQPGI EWNKG+I DNG +GAYAS DAVRG SF+MIY+DECAF+P F D W Sbjct: 194 ENLPDFLQPGIEEWNKGNITFDNGCKLGAYASGSDAVRGKSFSMIYVDECAFVPGFDDFW 253 Query: 268 LAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLYNDED 327 A PVISSG SK+++T+TPNGLNH++D+W AAV+G S FEPYT W +V+ RLY D + Sbjct: 254 KATFPVISSGEESKVVLTSTPNGLNHYHDMWNAAVQGISTFEPYTTTWRAVQNRLYKDGE 313 Query: 328 IFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHGFHRF 387 FDDG + +TI ++ F QEH F GT+GTLI+G KL+ M I+V D G+ + Sbjct: 314 -FDDGEAFKRETIGNTSREAFSQEHLCNFLGTAGTLINGFKLSKMKGIDVVKDSDGWCVY 372 Query: 388 KSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVMRYL 447 K PE KYI T+D SEGRGQDYHALH+IDVT +EQV V H N SHL+LP I+M+ Sbjct: 373 KKPEEGHKYILTVDTSEGRGQDYHALHMIDVTSYPFEQVAVFHDNKTSHLLLPAIIMKQA 432 Query: 448 VEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSYTD-----LGMKQTKRTKAVGCST 502 YNE VY E+ STG V L+ DLEYE VI + LG+K K+TKA+GCST Sbjct: 433 YRYNEAYVYCEIASTGELVMNELFRDLEYENVIMEERASGGRRGLGLKPNKKTKAIGCST 492 Query: 503 LKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSLVIFGWLSTQSKFIDY 562 LKDLIEKD+L I+H T++EF TF EKG SW AEEG+HDDLVMSL + +LSTQ +F D+ Sbjct: 493 LKDLIEKDQLKINHIPTLKEFHTFVEKGKSWEAEEGFHDDLVMSLTLLAYLSTQDRFSDF 552 Query: 563 ADKNDMRLASEVFSKELQDMGDEYAPVIFV 592 +K + ++ ++F +E+ DM D+ P + + Sbjct: 553 VEK-EYNVSYDIFKQEVHDMMDDDVPFLMI 581 >gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: terminase large subunit gp17 # Family: family:all:147 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195134;genbank:gi:58532911;uniprot:Q5GQN8 ;genbank:GeneID:3260486 Length = 548 Score = 363 bits (931), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/538 (37%), Positives = 302/538 (56%), Gaps = 31/538 (5%) Query: 87 YMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDYQRDM 146 Y+G P LK+AN+K +T+E V+EW KC +D VYF + Y I +D G++ ++ D+Q ++ Sbjct: 7 YLGNPLLKKANVKIDFTKEQVKEWIKCANDPVYFTKNYVKIVSLDEGLVPFKMWDFQEEL 66 Query: 147 LKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 206 + R + L RQ GK+T V +L H++ FN + +GILA+K S + ++L R A Sbjct: 67 IMKFHKNRFNIAKLPRQTGKSTTVVSYLLHYLIFNDNVNIGILANKASTARDLLARLATA 126 Query: 207 IELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPN-FHD 265 E LP ++Q G+V WNKG+IEL+NGS I A ++S AVRG SF +I++DE AF+PN D Sbjct: 127 YENLPKWIQQGVVVWNKGNIELENGSKILAASTSASAVRGMSFNIIFLDEFAFVPNHIAD 186 Query: 266 SWLA-IQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLYN 324 S+ A + P I+SG+ +K+II +TP G+NHFY +W A G++G+ + W+ V R Sbjct: 187 SFFASVYPTITSGKSTKVIIISTPQGMNHFYKMWVDATNGRNGYTFHEVHWSQVPGR--- 243 Query: 325 DEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHGF 384 DE +W +TI ++ QF QE F G+ TLI+ KL + F + + G Sbjct: 244 DE-------KWKEETIKNTSERQFTQEFECEFLGSVDTLIAASKLKALVFNDPIKRNKGL 296 Query: 385 HRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVM 444 ++ P+ +Y+ T+D S G G DY A I D+T ++ VG +N I ++ P+I+ Sbjct: 297 DIYEEPKEKSEYLMTVDVSRGIGGDYSAFIIFDITTVPYKVVGKYRNNEIKPMLFPNIIN 356 Query: 445 RYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVI----------------CDSYTDLG 488 YN V E+N G VA L DLEY V+ S T LG Sbjct: 357 DLARSYNNAWVLCEVNDIGDQVASILNYDLEYPNVLMCAMRGRAGQLVGQGFSGSKTQLG 416 Query: 489 MKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSLV 548 +K + K VGC+ LK ++E+DKLI + I E TF +K S+ A+EG+HDDLVM +V Sbjct: 417 VKMSITVKKVGCANLKTIVEEDKLIFNDYDIINELTTFIQKKQSFEADEGFHDDLVMCMV 476 Query: 549 IFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSVHSAEYVPVSHG 606 IF WL Q F + D ND+R ++ ++ + + AP F+ + E VS G Sbjct: 477 IFAWLVQQDYFKEMTD-NDIR--QRIYDEQKNQIEQDMAPFGFITTGLEGEEGFVSDG 531 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 354 bits (909), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 201/528 (38%), Positives = 293/528 (55%), Gaps = 31/528 (5%) Query: 83 KRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDY 142 K+ Y+G PNLK+AN+ TQ+T++ V E+ KC D VYF Y I +D GVI + ++ Sbjct: 4 KQEIYLGNPNLKKANVSTQFTKKQVAEYMKCAQDPVYFIRKYIRIVSLDEGVIPFDMYNF 63 Query: 143 QRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDR 202 Q DM+ R + L RQ GK+T+V +L +V FN + V ILA+K + E+L R Sbjct: 64 QEDMVTKFHQHRFNIAKLPRQSGKSTIVTAYLLWYVLFNANVNVAILANKAPTAREMLGR 123 Query: 203 TKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPN 262 + + E LP ++Q GI+ WNKGS+EL+NGS I A ++S AVRG SF +I++DE AF+PN Sbjct: 124 LQLSYENLPKWMQQGILGWNKGSLELENGSKILASSTSASAVRGMSFNIIFLDEFAFVPN 183 Query: 263 F--HDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKE 320 + ++ P ISSG+ +K+II +TP+G+N FY +W A G + + W+ V Sbjct: 184 HIAEQFFASVYPTISSGKSTKVIIISTPHGMNQFYKLWHDAERGANNYVATEVHWSQVPG 243 Query: 321 RLYNDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPD 380 R DD +W QTI ++ AQFR E F G+ TLI+ KL +M + + + Sbjct: 244 R--------DD--KWKQQTIENTSEAQFRVEFECEFLGSVDTLITPSKLRIMPYKDPIQE 293 Query: 381 DHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILP 440 + G ++ + + YI T+D S G G DY A +ID T ++ V +N I L+ P Sbjct: 294 NRGLAVYEHVQENHNYIITVDVSRGVGNDYSAFCVIDTTTVPYKVVARYKNNQIKPLVFP 353 Query: 441 DIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY---------------- 484 ++++ YN V E+N G VA + DLEYE ++ S Sbjct: 354 NLIVDVATNYNGAYVLCEVNDIGGQVADIIQYDLEYENLLMVSMRGRAGQQLGQGFSGKK 413 Query: 485 TDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLV 544 T LG+K + K VGCS LK LIE DKLI+ TI E TF +KG S+ AE+G +DDL Sbjct: 414 TQLGIKMSTAVKQVGCSNLKALIEDDKLIVEDYDTIAELTTFIQKGQSFQAEDGCNDDLA 473 Query: 545 MSLVIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFV 592 M LVIF W++ Q F + D ND+R ++ + + + AP FV Sbjct: 474 MCLVIFSWMAMQPYFKEMHD-NDVR--QRIYEDQRDQIEQDMAPFGFV 518 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 342 bits (876), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 186/524 (35%), Positives = 290/524 (55%), Gaps = 31/524 (5%) Query: 87 YMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDYQRDM 146 Y+G PNLK+AN +++++ + E+ KC++D VYF Y I +D G++ + D+Q + Sbjct: 5 YLGNPNLKKANTPIEFSKDNIREFLKCKEDPVYFTRNYIKIVSLDEGLVPFNMYDFQEKL 64 Query: 147 LKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 206 + R +C + RQ GK+T +L H+ FN + V +LA+K S + ++L R + A Sbjct: 65 ITRFHENRFNICKMPRQTGKSTTCISYLLHYAVFNDNVNVAVLANKASTARDLLGRLQLA 124 Query: 207 IELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNF--H 264 E LP ++Q GI+ WNKGS+EL+NGS I A ++S AVRG S+ +I++DE AFIPN Sbjct: 125 YENLPRWMQQGIISWNKGSLELENGSKISANSTSSSAVRGGSYNVIFLDEFAFIPNHIAD 184 Query: 265 DSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLYN 324 D + ++ P I+SG+ +K+II +TP G+NHFY +W + +GKS + W+ V R Sbjct: 185 DFFASVYPTITSGQSTKVIIVSTPRGMNHFYRMWHDSEKGKSEYVATDVHWSEVPGR--- 241 Query: 325 DEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHGF 384 DE +W QTI ++ QF+ E F G+ TLI+ KL + + + G Sbjct: 242 DE-------EWKEQTIANTSEQQFKIEFECEFLGSVNTLINPAKLRNLVYEAPKTRNAGL 294 Query: 385 HRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIVM 444 +++P + YI T+D + G G DY A + D T+ ++ V +N I ++ P+I++ Sbjct: 295 DIYETPVKEHNYIITVDVARGLGNDYSAFIVFDTTEFPYKVVAKYRNNEIKPMLFPNIIL 354 Query: 445 RYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY----------------TDLG 488 YN + IE+N G VA L DLEYE V+ S T LG Sbjct: 355 DVAKGYNNAYLLIEVNDIGDQVASILQYDLEYENVLMASMRGRAGQIVGQGFSGKKTQLG 414 Query: 489 MKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSLV 548 ++ T K +GCS LK ++E DKL+ I E TF+++ S+ AEEG +DDL M LV Sbjct: 415 VRMTSAVKKLGCSNLKTMMEDDKLLTCDYEIISELTTFAQRHNSFEAEEGCNDDLAMCLV 474 Query: 549 IFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFV 592 IF WL Q F + +D ND+R ++ ++ + + AP F+ Sbjct: 475 IFSWLVAQDYFKEMSD-NDIR--KRIYEEQKNQIEQDMAPFGFI 515 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 329 bits (843), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 189/539 (35%), Positives = 294/539 (54%), Gaps = 31/539 (5%) Query: 86 RYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDYQRD 145 +Y+G PNLK+AN+ ++T + V E KC ++ VYF + Y I +D G+I + +Q + Sbjct: 6 QYLGNPNLKKANVSQEFTPDQVAEVIKCSENPVYFIKNYIKIVSLDKGLIPFDMYYFQEE 65 Query: 146 MLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 205 M++ R + L RQ GK+T+V +L +V FN + V ILA+K + + E+L R + Sbjct: 66 MVQKFHDNRFNIAKLPRQSGKSTIVTSYLLWYVLFNANVNVAILANKAATAREMLQRLQL 125 Query: 206 AIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPN-FH 264 + E LP +LQ GI++WN+GS+EL+NGS I A ++S AVRG SF +I++DE AF+PN Sbjct: 126 SYENLPKWLQQGILQWNRGSLELENGSKILAASTSASAVRGMSFNVIFLDEFAFVPNHVA 185 Query: 265 DSWL-AIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKERLY 323 D + ++ P ISSG+ +K+II +TP+G+N FY +W A + + P W+ V R Sbjct: 186 DQFFSSVYPTISSGKSTKVIIISTPHGMNMFYKLWHDAERKANEYIPTEVHWSEVPGR-- 243 Query: 324 NDEDIFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHG 383 D W+ QTI ++ QFR E F G+ TLIS KL M + + + +G Sbjct: 244 ------DAAWKE--QTIKNTSEQQFRVEFECEFLGSVDTLISPSKLRTMVYGDPIAEKNG 295 Query: 384 FHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISHLILPDIV 443 ++ Y+ T D S G DY A +ID T ++ V +N I ++ P+I+ Sbjct: 296 LSMYEKTIQGHTYVITADVSRGVSGDYSAFLVIDTTTIPYKLVAKYRNNDIKPILFPNII 355 Query: 444 MRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSY----------------TDL 487 + YN V +E+N G VA + DLEY+ ++ + T + Sbjct: 356 VDVARNYNHAFVLVEVNDVGGQVADIIQYDLEYDNLLMCAMRGRAGQQLGQGFSGKKTQM 415 Query: 488 GMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSL 547 G+K + TK VGCS LK L+E DK +++ I E TF +KG ++ AEEG +DDL M + Sbjct: 416 GIKMSSATKQVGCSNLKALLEDDKFLLNDYDCISELTTFIQKGQTFQAEEGCNDDLAMCM 475 Query: 548 VIFGWLSTQSKFIDYADKNDMRLASEVFSKELQDMGDEYAPVIFVDSVHSAEYVPVSHG 606 VIF W++ Q F + D ND+R ++ + + + + AP F+D EY + G Sbjct: 476 VIFAWMAMQPYFKELHD-NDVR--QRIYDDQREAIEQDMAPFGFMDDGLGEEYFADAQG 531 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 154 bits (390), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/447 (27%), Positives = 205/447 (45%), Gaps = 30/447 (6%) Query: 108 EEWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKT 167 +E +KC++D +YF Y I H VI L Q ++ + R + RQ+G T Sbjct: 9 QELEKCKNDPIYFIRKYVKIQHPIKRVIPFDLYPIQEKLINFYHTHRYVITEKPRQMGVT 68 Query: 168 TVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIE 227 + H + FN + V I A+K + + VL+R K A E LP FLQ WNK IE Sbjct: 69 WCAVAYALHQMIFNSNYKVLIAANKEATAKNVLERIKFAYEQLPRFLQIKKRTWNKTYIE 128 Query: 228 LDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTT 287 N SS A +S D+ R S ++ ++E AFI N + W ++Q +++G K I+ +T Sbjct: 129 FSNYSSARAVSSKSDSGRSESITLLIVEEAAFISNMEELWASVQQTLATG--GKCIVNST 186 Query: 288 PNGLNHFYD-IWTAAVEGKSGFEPYTAIWNSVKERLYNDEDIFDDGWQWSIQTINGSTLA 346 NG+ ++Y+ AA EGKS F+ + W+ ER DE F++ + + Sbjct: 187 YNGVGNWYERTIRAAKEGKSEFKYFGIKWSDHPER---DEKWFEEQKRLLPPRV------ 237 Query: 347 QFRQEHTAAFEGTSGTLISGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGR 406 F QE +G+ +I + +FI+ +G ++ Y ++D + GR Sbjct: 238 -FAQEILCIPQGSGENVIPFHLIREEEFIDPFVVKYGGDYWEWYRKPGYYFISVDPASGR 296 Query: 407 GQDYHALHI----IDVTDDVWEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNST 462 G+D A+ + +D EQV S+ S ++ ++ + E+ ++IE N Sbjct: 297 GEDRSAVGVQVLWVDPQTLTIEQVAEFASDKTSLPVMRQVIKQIYDEFKPQLIFIETNGI 356 Query: 463 GVSVAKSLYMDLE-YEGVICDSYTDLGMKQTKRTKAVGCSTLKDLIEKDKLIIHHRATIQ 521 G+ LY +E Y I YT T+R K G L L E +LI+ + ++ Sbjct: 357 GM----GLYQFMEAYTPSIVGYYT------TQRKKVHGSDLLAKLYEDGRLILRSKRLLE 406 Query: 522 EFRTFSEKGVSWAAEEGYHDDLVMSLV 548 + + + V E +DL M+L+ Sbjct: 407 QLQRTT--WVKNKVETAGRNDLYMALI 431 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 71.6 bits (174), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 108/433 (24%), Positives = 180/433 (41%), Gaps = 59/433 (13%) Query: 151 SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVG-ILAHKGSMSAEVLDRTKQAIEL 209 ++KR C L RQ GK+ ++ A F F + + G I+A + + R + +E Sbjct: 29 TAKRRVAC-LGRQSGKSEAASV-EAVFELFARPGSQGWIIAPTYDQAEIIFGRVVEKVER 86 Query: 210 LPDFLQPGIVEWNK-----------------GSIELDNGSSIGAYASSPDAVRGNSFAMI 252 L + V+ + G+ + G A PD +RG + + Sbjct: 87 LAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRVATSEFRGKSADRPDNLRGATLDFV 146 Query: 253 YIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYT 312 +DE A IP F AI+P +S R +I +TP GLN FY+ + G G + Sbjct: 147 ILDEAAMIP-FSVWSEAIEPTLSV-RDGWALIISTPKGLNWFYEFFLMGWRG--GLK--E 200 Query: 313 AIWNSVKERLYNDEDIFD----DGW----QWSIQTINGSTLAQFRQEHTAAFEGTSGTLI 364 I NS + + D + F D W +W ++ +FRQE+ A F S ++ Sbjct: 201 GIPNSGVNQTHPDFESFHAASWDVWPERREWYMERRLYIPDLEFRQEYGAEFVSHSNSVF 260 Query: 365 SGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWE 424 SG +D + + P + R + +I + G+ QDY ++D+ Sbjct: 261 SG-----LDMLILLPYERRGTRLVVEDYRPDHIYCIGADFGKNQDYSVFSVLDLDTGAIV 315 Query: 425 QVGVLHSNTISHLILPDIVMRYLVE-YNECPVYIELNSTGVSVAKSLYMDLEYEGVICDS 483 + ++ T S + ++ L E Y V + G ++A+ +L+ +G+ + Sbjct: 316 CLERMNGATWSDQV---ARLKALSEDYGHAYVVADTWGVGDAIAE----ELDAQGI---N 365 Query: 484 YTDLGMKQTKRTKAVGCSTLKDLIEK-------DKLIIHHRATIQEFRTFSEKGVSWAAE 536 YT L +K + K S L L+EK DK I+ + +RT S V A Sbjct: 366 YTPLPVKSSS-VKEQLISNLALLMEKGQVAVPNDKTILDELRNFRYYRTASGNQVMRAYG 424 Query: 537 EGYHDDLVMSLVI 549 G HDD+VMSL + Sbjct: 425 RG-HDDIVMSLAL 436 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 71.2 bits (173), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 108/433 (24%), Positives = 180/433 (41%), Gaps = 59/433 (13%) Query: 151 SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVG-ILAHKGSMSAEVLDRTKQAIEL 209 ++KR C L RQ GK+ ++ A F F + + G I+A + + R + +E Sbjct: 29 TAKRRVAC-LGRQSGKSEAASV-EAVFELFARPGSQGWIIAPTYDQAEIIFGRVVEKVER 86 Query: 210 LPDFLQPGIVEWNK-----------------GSIELDNGSSIGAYASSPDAVRGNSFAMI 252 L + V+ + G+ + G A PD +RG + + Sbjct: 87 LAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRVATSEFRGKSADRPDNLRGATLDFV 146 Query: 253 YIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYT 312 +DE A IP F AI+P +S R +I +TP GLN FY+ + G G + Sbjct: 147 ILDEAAMIP-FSVWSEAIEPTLSV-RDGWALIISTPKGLNWFYEFFLMGWRG--GLK--E 200 Query: 313 AIWNSVKERLYNDEDIFD----DGW----QWSIQTINGSTLAQFRQEHTAAFEGTSGTLI 364 I NS + + D + F D W +W ++ +FRQE+ A F S ++ Sbjct: 201 GIPNSGINQTHPDFESFHAASWDVWPERREWYMERRLYIPDLEFRQEYGAEFVSHSNSVF 260 Query: 365 SGMKLAVMDFIEVTPDDHGFHRFKSPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWE 424 SG +D + + P + R + +I + G+ QDY ++D+ Sbjct: 261 SG-----LDMLILLPYERRGTRLVVEDYRPDHIYCIGADFGKNQDYSVFSVLDLDTGAIV 315 Query: 425 QVGVLHSNTISHLILPDIVMRYLVE-YNECPVYIELNSTGVSVAKSLYMDLEYEGVICDS 483 + ++ T S + ++ L E Y V + G ++A+ +L+ +G+ + Sbjct: 316 CLERMNGATWSDQV---ARLKALSEDYGHAYVVADTWGVGDAIAE----ELDAQGI---N 365 Query: 484 YTDLGMKQTKRTKAVGCSTLKDLIEK-------DKLIIHHRATIQEFRTFSEKGVSWAAE 536 YT L +K + K S L L+EK DK I+ + +RT S V A Sbjct: 366 YTPLPVKSSS-VKEQLISNLALLMEKGQVAVPNDKTILDELRNFRYYRTASGNQVMRAYG 424 Query: 537 EGYHDDLVMSLVI 549 G HDD+VMSL + Sbjct: 425 RG-HDDIVMSLAL 436 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 74/171 (43%), Gaps = 16/171 (9%) Query: 140 RDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKA------VGILAHKG 193 RDYQ ML+ M+ + TV L R+LGKT + I + +K + I+A Sbjct: 69 RDYQEPMLQEMADSKRTVLRLGRRLGKTETMCIMILWHAFTQPNKGPNNQYDILIIAPYE 128 Query: 194 SMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSI-----GAYASSPDA-VRGN 247 + R Q I++ D ++ IEL NG+ I G+ + S A RG Sbjct: 129 EQVDLIFKRLSQLIDMSGDVNPSRDID---KHIELPNGTVIHGITAGSKSGSGAANTRGQ 185 Query: 248 SFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIW 298 +I +DE ++ + + + + R K+I+ +TP+G Y W Sbjct: 186 RADLIVLDEMDYMGESEITNI-MNIRNEAPERIKMIVASTPSGRRDSYYKW 235 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID: 1262208 Length = 568 Score = 43.9 bits (102), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 19/140 (13%) Query: 134 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 ++ ++R QR + + M +K + + +RQLG +T + I+L F GI+A Sbjct: 49 LVTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 Query: 194 SMSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IELDNGSSIGAYASSPDAVR 245 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FR 161 Query: 246 GNSFAMIYIDE----CAFIP 261 + ++I E CA P Sbjct: 162 SGTVQRLHISEHGKICAKYP 181 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 24/176 (13%) Query: 390 PEPDRKYIATLDCSEG-RGQDYHALHIIDVTDDVWEQV----GVLHSNTISHLILPDIVM 444 P+PD +Y+ D +EG D +L ++ ++ EQV G L + +HLI M Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGHLDAELFAHLISQVCRM 431 Query: 445 RYLVEYNECPVYIELNSTGVSV---------AKSLYMDLEYEGVICDSYTDLGMKQTKRT 495 YN V E N+ G +V + +Y + + D LG T+++ Sbjct: 432 -----YNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQS 486 Query: 496 KAVGCSTLKDLIEKDKLIIHHRATIQEFRT--FSEKGVSWAAEEGYHDDLVMSLVI 549 K V +K L+ I T+ E T + KG S A+EG DD +MS +I Sbjct: 487 KPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneID :2653342 Length = 568 Score = 43.9 bits (102), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 19/140 (13%) Query: 134 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 ++ ++R QR + + M +K + + +RQLG +T + I+L F GI+A Sbjct: 49 LVTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 Query: 194 SMSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IELDNGSSIGAYASSPDAVR 245 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FR 161 Query: 246 GNSFAMIYIDE----CAFIP 261 + ++I E CA P Sbjct: 162 SGTVQRLHISEHGKICAKYP 181 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 24/176 (13%) Query: 390 PEPDRKYIATLDCSEG-RGQDYHALHIIDVTDDVWEQV----GVLHSNTISHLILPDIVM 444 P+PD +Y+ D +EG D +L ++ ++ EQV G L + +HLI M Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGHLDAELFAHLISQVCRM 431 Query: 445 RYLVEYNECPVYIELNSTGVSV---------AKSLYMDLEYEGVICDSYTDLGMKQTKRT 495 YN V E N+ G +V + +Y + + D LG T+++ Sbjct: 432 -----YNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQS 486 Query: 496 KAVGCSTLKDLIEKDKLIIHHRATIQEFRT--FSEKGVSWAAEEGYHDDLVMSLVI 549 K V +K L+ I T+ E T + KG S A+EG DD +MS +I Sbjct: 487 KPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID: 1262002 Length = 568 Score = 43.9 bits (102), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 19/140 (13%) Query: 134 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 ++ ++R QR + + M +K + + +RQLG +T + I+L F GI+A Sbjct: 49 LVTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 Query: 194 SMSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IELDNGSSIGAYASSPDAVR 245 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FR 161 Query: 246 GNSFAMIYIDE----CAFIP 261 + ++I E CA P Sbjct: 162 SGTVQRLHISEHGKICAKYP 181 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 24/176 (13%) Query: 390 PEPDRKYIATLDCSEG-RGQDYHALHIIDVTDDVWEQV----GVLHSNTISHLILPDIVM 444 P+PD +Y+ D +EG D +L ++ ++ EQV G L + +HLI M Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGHLDAELFAHLISQVCRM 431 Query: 445 RYLVEYNECPVYIELNSTGVSV---------AKSLYMDLEYEGVICDSYTDLGMKQTKRT 495 YN V E N+ G +V + +Y + + D LG T+++ Sbjct: 432 -----YNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQS 486 Query: 496 KAVGCSTLKDLIEKDKLIIHHRATIQEFRT--FSEKGVSWAAEEGYHDDLVMSLVI 549 K V +K L+ I T+ E T + KG S A+EG DD +MS +I Sbjct: 487 KPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneID :935714 Length = 568 Score = 43.9 bits (102), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 19/140 (13%) Query: 134 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 ++ ++R QR + + M +K + + +RQLG +T + I+L F GI+A Sbjct: 49 LVTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 Query: 194 SMSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IELDNGSSIGAYASSPDAVR 245 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FR 161 Query: 246 GNSFAMIYIDE----CAFIP 261 + ++I E CA P Sbjct: 162 SGTVQRLHISEHGKICAKYP 181 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 24/176 (13%) Query: 390 PEPDRKYIATLDCSEG-RGQDYHALHIIDVTDDVWEQV----GVLHSNTISHLILPDIVM 444 P+PD +Y+ D +EG D +L ++ ++ EQV G L + +HLI M Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGHLDAELFAHLISQVCRM 431 Query: 445 RYLVEYNECPVYIELNSTGVSV---------AKSLYMDLEYEGVICDSYTDLGMKQTKRT 495 YN V E N+ G +V + +Y + + D LG T+++ Sbjct: 432 -----YNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQS 486 Query: 496 KAVGCSTLKDLIEKDKLIIHHRATIQEFRT--FSEKGVSWAAEEGYHDDLVMSLVI 549 K V +K L+ I T+ E T + KG S A+EG DD +MS +I Sbjct: 487 KPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneID :2653280 Length = 568 Score = 43.9 bits (102), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 19/140 (13%) Query: 134 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 ++ ++R QR + + M +K + + +RQLG +T + I+L F GI+A Sbjct: 49 LVTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 Query: 194 SMSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IELDNGSSIGAYASSPDAVR 245 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FR 161 Query: 246 GNSFAMIYIDE----CAFIP 261 + ++I E CA P Sbjct: 162 SGTVQRLHISEHGKICAKYP 181 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 24/176 (13%) Query: 390 PEPDRKYIATLDCSEG-RGQDYHALHIIDVTDDVWEQV----GVLHSNTISHLILPDIVM 444 P+PD +Y+ D +EG D +L ++ ++ EQV G L + +HLI M Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGHLDAELFAHLISQVCRM 431 Query: 445 RYLVEYNECPVYIELNSTGVSV---------AKSLYMDLEYEGVICDSYTDLGMKQTKRT 495 YN V E N+ G +V + +Y + + D LG T+++ Sbjct: 432 -----YNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQS 486 Query: 496 KAVGCSTLKDLIEKDKLIIHHRATIQEFRT--FSEKGVSWAAEEGYHDDLVMSLVI 549 K V +K L+ I T+ E T + KG S A+EG DD +MS +I Sbjct: 487 KPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:GeneI D:4397501 Length = 568 Score = 43.9 bits (102), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 19/140 (13%) Query: 134 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 ++ ++R QR + + M +K + + +RQLG +T + I+L F GI+A Sbjct: 49 LVTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 Query: 194 SMSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IELDNGSSIGAYASSPDAVR 245 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FR 161 Query: 246 GNSFAMIYIDE----CAFIP 261 + ++I E CA P Sbjct: 162 SGTVQRLHISEHGKICAKYP 181 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 24/176 (13%) Query: 390 PEPDRKYIATLDCSEG-RGQDYHALHIIDVTDDVWEQV----GVLHSNTISHLILPDIVM 444 P+PD +Y+ D +EG D +L ++ ++ EQV G L + +HLI M Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGHLDAELFAHLISQVCRM 431 Query: 445 RYLVEYNECPVYIELNSTGVSV---------AKSLYMDLEYEGVICDSYTDLGMKQTKRT 495 YN V E N+ G +V + +Y + + D LG T+++ Sbjct: 432 -----YNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQS 486 Query: 496 KAVGCSTLKDLIEKDKLIIHHRATIQEFRT--FSEKGVSWAAEEGYHDDLVMSLVI 549 K V +K L+ I T+ E T + KG S A+EG DD +MS +I Sbjct: 487 KPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 >gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bcep22gp49 # Family: family:all:147 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944278;genbank:gi:38640355;genbank:GeneID :2658275 Length = 530 Score = 42.4 bits (98), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 14/162 (8%) Query: 161 SRQLGKTTVVAIFLAHFVCFNKDKAVGILAH-KGSMSAEVLDRTKQAIELLPDFLQPGIV 219 +RQLG TT++ I FN + GI+A + + A D+ K A + LP+ L+ + Sbjct: 77 ARQLGFTTLICIIWLDHALFNANSRCGIIAQDRETAEALFRDKVKFAYDNLPEALREAMP 136 Query: 220 EWNKGSIEL---DNGSSIGAYASSPDAVRGNSFAMIYIDE----CAFIPNFHDSWLAIQP 272 N EL N SSI S VRG + ++I E CA P+ + + Sbjct: 137 LANCTKAELLFAHNNSSIRVATS----VRGGTIHRLHISEFGKICAKYPD-KAAEVVTGS 191 Query: 273 VISSGRRSKIIITTTPNGL-NHFYDIWTAAVEGKSGFEPYTA 313 + + + ++I +T G FY+I A +P TA Sbjct: 192 IPAVPKSGILVIESTAEGREGEFYNITMQAEAIAQAGKPLTA 233 >gi|20547|lcl|protein:vir:105155 Length: 580 # NCBI annotation: conserved phage-related protein # Family: family:all:4926 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398598;genbank:gi:80159854;genbank:GeneID :3772993 Length = 580 Score = 41.6 bits (96), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 14/162 (8%) Query: 107 VEEWKKCRDDIVYFAETYCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGK 166 EEW+K + + +C V+ ++L +QR +L+ M+ + + R LGK Sbjct: 40 TEEWEKYISYYRKYIDKFCI------EVLGLKLYLFQRLILRAMARNQYVMLICCRGLGK 93 Query: 167 TTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEV-LDRTKQAIELLPDFLQPGIVEWNKGS 225 + + A+F K GI + +G + V + + K + P + + G+ Sbjct: 94 SWLSAVFFVASCILYKGLKCGIASGQGQQARNVIIQKVKGELAKNPSIAREIVFPIKTGA 153 Query: 226 ----IELDNGSSIGAYA---SSPDAVRGNSFAMIYIDECAFI 260 + NGS I A + D R F + +DEC + Sbjct: 154 DDCVVNFRNGSEIRAIVLGRNQGDGARSWRFHYLLVDECRLV 195 >gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164303;genbank:gi:56692921;genbank:GeneID :3197204 Length = 543 Score = 35.0 bits (79), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%) Query: 161 SRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVL-DRTKQAIELLPDFLQPGIV 219 +RQLG TT++AI FN D+ GI+A + + D+ K A + LP+ ++ Sbjct: 86 ARQLGFTTLIAIMWLDHALFNGDQRCGIIAQDRDAAKVIFRDKVKFAYDNLPEEIRERFP 145 Query: 220 EWNKGSIEL---DNGSSIGAYASSPDAVRGNSFAMIYIDE----CAFIPN 262 + EL N SS+ S +R + +++ E CA P+ Sbjct: 146 TAAANADELLFAHNNSSVRVATS----MRSGTIHRLHVSEFGKICAKYPD 191 >gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: large terminase subunit # Family: family:all:460 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164067;genbank:gi:56692599;genbank:GeneID :3192575 Length = 486 Score = 33.1 bits (74), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 226 IELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIIT 285 +E NG I + +S+PDA G I +DE A P+ W P I+ G + II+ Sbjct: 111 LEFANGRRIHSMSSNPDAQAGKRGGRI-LDEFALHPDPRKLWSIAYPGITWGGAME-IIS 168 Query: 286 TTPNGLNHFYDIWTAAVEG 304 T N F + VEG Sbjct: 169 THRGSQNFFNQLVREIVEG 187 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 30.8 bits (68), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 218 IVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSG 277 ++E KG + D G SS D ++G + A I+ DE A +P +S++ S Sbjct: 107 LIEITKGDVSNDFYIFGGKDESSQDLIQGLTLAGIFFDEVALMP---ESFVNQGTGRCSV 163 Query: 278 RRSKIIITTTPNGLNHFYDI-WTAAVEGKS 306 SK P+G H++ + W E K+ Sbjct: 164 TGSKWWFNCNPDGPYHWFKVNWIDKAETKN 193 >gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF025 # Family: family:all:1546 # MgeID: mge:163 # MgeName: phiKZ # Cross-refs: genbank:acc:NP_803591;genbank:gi:29134961;genbank:GeneID :1258246 Length = 717 Score = 30.4 bits (67), Expect = 0.060, Method: Compositional matrix adjust. Identities = 13/26 (50%), Positives = 18/26 (69%) Query: 537 EGYHDDLVMSLVIFGWLSTQSKFIDY 562 +G HDDLV+SL++ WL Q K + Y Sbjct: 590 KGNHDDLVVSLLLAHWLLIQGKNLSY 615 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 29.3 bits (64), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 246 GNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRR----SKIIITTTPNGLNHFYDI 297 G + I+ DE P D + + +I+ R + + T+T NG N FYDI Sbjct: 135 GGEYCRIWCDEVGHYPPNTDLYDLHEMLITRQRTEIGPNTTLWTSTGNGFNQFYDI 190 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 29.3 bits (64), Expect = 0.14, Method: Compositional matrix adjust. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 226 IELDNGSSIGAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIIT 285 I L NG+ + +++ ++ + S +YIDE +IPNF + + K + Sbjct: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 Query: 286 TTPNGLNHFYDIWTA 300 T + ++ Y WT Sbjct: 297 TPSSKVHEAYRFWTG 311 >gi|8126|lcl|protein:vir:102661 Length: 568 # NCBI annotation: terminase # Family: family:all:147 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024418;genbank:gi:48696639;genbank:GeneID :2948128 Length = 568 Score = 27.3 bits (59), Expect = 0.52, Method: Compositional matrix adjust. Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 36/209 (17%) Query: 151 SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL 210 S ++ + L R+ GK I H + VG H + D I+ L Sbjct: 81 SWRKKAIQVLHRRAGKD----IGALHLIAIASQLRVGNYKHILPYKTQARDAIWDGIDAL 136 Query: 211 ---------PDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRG-NSFAMIYIDECAFI 260 PD + I E ++ + NGS+ D + G ++Y + Sbjct: 137 GNRFIRNAFPDEIVESINE-SRMLVRFTNGSTYQLQGGDSDKLVGAGPVGIVYSESALMS 195 Query: 261 PNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSVKE 320 PN ++P++ ++ ITT P G N FY + A + + + Y I Sbjct: 196 PNVR---TFLRPMLDETGGWELHITT-PRGKNWFYKLAMHAEKSEEWYYKYLTI------ 245 Query: 321 RLYNDEDIFDDGWQW--SIQTINGSTLAQ 347 +D W+W S + ++ TL Q Sbjct: 246 ---------NDTWRWAYSSEALDTDTLQQ 265 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 27.3 bits (59), Expect = 0.57, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 5/93 (5%) Query: 139 LRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSA 197 L Q D+LK + + + R KTT+ AI+ + K + I++ + Sbjct: 50 LNRVQADILKFLFGGNKYRMVEAQRGQAKTTIAAIYAVFRIIHEPHKRIMIVSQTAKRAE 109 Query: 198 EVLD---RTKQAIELLPDFLQPGIVEWNKGSIE 227 E+ + + ++ L +F+ P I +K SI+ Sbjct: 110 EIAGWVIKIFRGLDFL-EFMLPDIYAGDKASIK 141 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 26.9 bits (58), Expect = 0.75, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 159 NLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL-- 210 +++R+ GK+ +V+ + + FN+ V +K + + + Q + L+ Sbjct: 97 SMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMASQQVNLMRS 154 Query: 211 -PDFLQPGIVEWNKGSIELDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFIPN 262 F++ + K IE SS+ A +++PDAV G + +DE A +P+ Sbjct: 155 KSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 26.9 bits (58), Expect = 0.75, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 159 NLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL-- 210 +++R+ GK+ +V+ + + FN+ V +K + + + Q + L+ Sbjct: 97 SMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMASQQVNLMRS 154 Query: 211 -PDFLQPGIVEWNKGSIELDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFIPN 262 F++ + K IE SS+ A +++PDAV G + +DE A +P+ Sbjct: 155 KSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 26.9 bits (58), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 159 NLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL-- 210 +++R+ GK+ +V+ + + FN+ V +K + + + Q + L+ Sbjct: 97 SMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMASQQVNLMRS 154 Query: 211 -PDFLQPGIVEWNKGSIELDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFIPN 262 F++ + K IE SS+ A +++PDAV G + +DE A +P+ Sbjct: 155 KSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 26.9 bits (58), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 159 NLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL-- 210 +++R+ GK+ +V+ + + FN+ V +K + + + Q + L+ Sbjct: 97 SMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMASQQVNLMRS 154 Query: 211 -PDFLQPGIVEWNKGSIELDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFIPN 262 F++ + K IE SS+ A +++PDAV G + +DE A +P+ Sbjct: 155 KSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 26.9 bits (58), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 159 NLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL-- 210 +++R+ GK+ +V+ + + FN+ V +K + + + Q + L+ Sbjct: 97 SMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMASQQVNLMRS 154 Query: 211 -PDFLQPGIVEWNKGSIELDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFIPN 262 F++ + K IE SS+ A +++PDAV G + +DE A +P+ Sbjct: 155 KSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 26.9 bits (58), Expect = 0.76, Method: Compositional matrix adjust. Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 159 NLSRQLGKTTVVA------IFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL-- 210 +++R+ GK+ +V+ + + FN+ V +K + + + Q + L+ Sbjct: 97 SMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMASQQVNLMRS 154 Query: 211 -PDFLQPGIVEWNKGSIELDNGSSIGA-YASSPDAVRGNSFAMIYIDECAFIPN 262 F++ + K IE SS+ A +++PDAV G + +DE A +P+ Sbjct: 155 KSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASMPD 207 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 26.9 bits (58), Expect = 0.78, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 16/28 (57%) Query: 327 DIFDDGWQWSIQTINGSTLAQFRQEHTA 354 D F+ QWS I+G+TLA Q+ A Sbjct: 5 DNFETAIQWSKDVISGNTLANIEQKQAA 32 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 235 GAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHF 294 G +S D V+G + A + DE A +P S++ S SK+ P+G H+ Sbjct: 118 GKDEASQDLVQGITLAGFFFDEVALMP---QSFVNQATARCSVTGSKMWFNCNPSGPFHW 174 Query: 295 YDI 297 + + Sbjct: 175 FKL 177 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 34/176 (19%) Query: 124 YCAITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKD 183 YC ID V+ V R + +L +M + + L +V+A+ + KD Sbjct: 70 YCTPYQIDEFVVIVG-RSNAKSILDVM----IALIELFLFPKPNSVIAL-----MATKKD 119 Query: 184 KAVGILAHK----GSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYAS 239 +A IL G+ ++++ K +L + + +V+ N SI G+ I YAS Sbjct: 120 QAEKILMKHFRAMGNCQGTIINKFKNQFKLNKEQI---LVKDN--SILKSKGTEISIYAS 174 Query: 240 SPDAVRGNSFAMIYIDEC-AFIPNFHDSWLAIQPVIS---SGRRSK--IIITTTPN 289 + D + G ++ IDE AF N P+I+ R++K + I+TT N Sbjct: 175 NEDTLDGGREQLVIIDEFGAFKKN---------PLITIRQGLRKNKGTLFISTTNN 221 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 252 IYIDECAFIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNH-FYDIWTAAVEGK 305 +Y+DE +IPNF + ++S + + +TP+ L H Y W+ + K Sbjct: 250 LYVDEIFWIPNFQ-KLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNK 303 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 17/113 (15%) Query: 158 CNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI--ELLPDFLQ 215 +++R+ GK+ +++ + + F K+ A +K + DR + I ++ D L+ Sbjct: 95 ISMARKNGKSLLISGVILYEFLFGKNPA-----NKRQLYTAANDRKQAGIVFGMVKDRLR 149 Query: 216 ------PGIVEWNKGS----IELDNGSSIGAYASSPDAVRGNSFAMIYIDECA 258 PGI K + + LD+GS+I +++ V G + +DE A Sbjct: 150 ALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYA 202 >gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817601;genbank:gi:29566031;genbank:GeneID :1259225 Length = 566 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Query: 177 FVCFNKD-KAVGILAHKG--SMSAEVLDRTKQAIELLPDFLQPGIVE-----WNKGSIEL 228 F F+ D VG H +++A D+TK L P + + E N+ I Sbjct: 116 FSHFDADGNPVGKPRHAAWITIAAVSQDQTKNTFSLFPIMISKQLKEDYGLLVNRFIIYS 175 Query: 229 DNGSSIGAYASSPDAVRGNSFAMIYIDE 256 + G I A SSP +V GN + +E Sbjct: 176 EAGGRIEAATSSPASVEGNRPTFVIENE 203 >gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6 # Family: family:all:147 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818544;genbank:gi:29566981;genbank:GeneID :1260231 Length = 581 Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 13/110 (11%) Query: 213 FLQPGIVEWNKG---SIELDNGSSIGAYASS--PDAVRGNSFAMIYIDECAFIPNFHDSW 267 F +PG KG ++ L +G+ I + SS P+ + G ++++E A Sbjct: 120 FDKPGTYFDIKGGDMTVSLWDGAFIYSAKSSAVPERLVGEGLTGVHMEEAAKQKEVVWKQ 179 Query: 268 LAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNS 317 + + ++ G +K TTTP G N +YD+ A+ P T W++ Sbjct: 180 MIMPTLMDFGGWAKF--TTTPEGKNWYYDLHQKAL------RPSTLNWSA 221 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 24.3 bits (51), Expect = 4.7, Method: Compositional matrix adjust. Identities = 8/30 (26%), Positives = 20/30 (66%) Query: 500 CSTLKDLIEKDKLIIHHRATIQEFRTFSEK 529 C L+ ++ +LI++ A +Q++++ S+K Sbjct: 445 CDVLEPIMGSHRLIVNAAAIVQDYQSASDK 474 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 252 IYIDECAFIPNFHDSWLAIQPVISSGRRSKIIIT----TTPNGLNH-FYDIWTA 300 +Y+DE +IPNF + ++SG S+ + +TP+ L H Y W+ Sbjct: 250 LYVDEIFWIPNFQ-----VLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSG 298 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 252 IYIDECAFIPNFHDSWLAIQPVISSGRRSKIIIT----TTPNGLNH-FYDIWTA 300 +Y+DE +IPNF + ++SG S+ + +TP+ L H Y W+ Sbjct: 250 LYVDEIFWIPNFQ-----VLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSG 298 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 23.9 bits (50), Expect = 6.4, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 252 IYIDECAFIPNFHDSWLAIQPVISSGRRSKIIIT----TTPNGLNH-FYDIWTA 300 +Y+DE +IPNF + ++SG S+ + +TP+ L H Y W+ Sbjct: 250 LYVDEIFWIPNFQ-----VLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSG 298 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 219 VEWNKGSIELDNGSSI---GAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVIS 275 +E I L +G+++ G A + + GN Y DE ++P F + + ++ Sbjct: 230 IELTGDPIILPSGATLYFLGTNARTAQSYHGN----FYFDEYFWVPKFRE-LNKVASGMA 284 Query: 276 SGRRSKIIITTTPNGLNH-FYDIWTAA 301 +R + +TP+ + H Y W+ A Sbjct: 285 MHKRWRKTYFSTPSSVTHEAYAFWSGA 311 >gi|8220|lcl|protein:vir:101493 Length: 588 # NCBI annotation: gp8 # Family: family:all:147 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655387;genbank:gi:109522575;genbank:GeneI D:4157565 Length = 588 Score = 23.5 bits (49), Expect = 7.3, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%) Query: 285 TTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNS 317 T+TP G NHF+D + + G +P W S Sbjct: 197 TSTPEGKNHFHDKF------QMGQDPNNPEWES 223 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 23.5 bits (49), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 219 VEWNKGSIELDNGSSI---GAYASSPDAVRGNSFAMIYIDECAFIPNFHDSWLAIQPVIS 275 +E I L +G+++ G A + + GN Y DE ++P F + + ++ Sbjct: 230 IELTGDPIILPSGATLYFLGTNARTAQSYHGN----FYFDEYFWVPKFRE-LNKVASGMA 284 Query: 276 SGRRSKIIITTTPNGLNH-FYDIWTAA 301 +R + +TP+ + H Y W+ A Sbjct: 285 MHKRWRKTYFSTPSSVTHEAYAFWSGA 311 >gi|9070|lcl|protein:vir:102238 Length: 588 # NCBI annotation: gp8 # Family: family:all:147 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655204;genbank:gi:109522784;genbank:GeneI D:4157477 Length = 588 Score = 23.5 bits (49), Expect = 7.3, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%) Query: 285 TTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNS 317 T+TP G NHF+D + + G +P W S Sbjct: 197 TSTPEGKNHFHDKF------QMGQDPNNPEWES 223 >gi|8997|lcl|protein:vir:101640 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:144 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112491;genbank:gi:53793591;uniprot:Q5ZGG2 ;genbank:GeneID:3101748 Length = 432 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 11/81 (13%) Query: 215 QPGIVEWNKGSIELDNGSSIGAYASSP--DAVRGNSFAMIYIDECAFIPNFHDSWLAIQP 272 Q G++ WN GS L + AY S D++ + +IDEC I + +W ++ Sbjct: 88 QSGVIYWNNGSEIL--LKDLYAYPSDQNFDSLGSLEISGAFIDECNQIT--YKAWQIVKS 143 Query: 273 VI-----SSGRRSKIIITTTP 288 I G K++ T P Sbjct: 144 RIRYKLNQYGIEPKMLGTCNP 164 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.135 0.414 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 298,253 Number of Sequences: 514 Number of extensions: 14188 Number of successful extensions: 134 Number of sequences better than 100.0: 58 Number of HSP's better than 100.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 74 length of query: 610 length of database: 206,069 effective HSP length: 77 effective length of query: 533 effective length of database: 166,491 effective search space: 88739703 effective search space used: 88739703 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)