Query lcl|NC_012635.1_cdsid_YP_002854118.1 [gene=13] [protein=neck protein] [protein_id=YP_002854118.1] [location=93098..94027] Match_columns 309 No_of_seqs 35 out of 40 Neff 4.5 Searched_HMMs 1612 Date Thu Nov 7 15:27:12 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_163 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_163_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:7198 Length: 309 # 100.0 6E-170 4E-173 948.4 24.3 309 1-309 1-309 (309) 2 protein:vir:103451 Length: 309 100.0 1E-169 7E-173 946.8 24.6 309 1-309 1-309 (309) 3 protein:vir:6889 Length: 308 # 100.0 5E-161 3E-164 899.6 25.3 308 1-309 1-308 (308) 4 protein:vir:107900 Length: 311 100.0 5E-158 3E-161 882.8 22.9 307 1-309 1-311 (311) 5 protein:vir:81013 Length: 310 100.0 7E-155 5E-158 865.6 26.5 307 1-309 1-310 (310) 6 protein:vir:6589 Length: 310 # 100.0 7E-155 5E-158 865.6 26.5 307 1-309 1-310 (310) 7 protein:vir:106428 Length: 306 100.0 9E-151 6E-154 843.1 27.0 302 1-309 2-306 (306) 8 protein:vir:101153 Length: 307 100.0 8E-149 5E-152 832.5 25.0 302 1-309 1-307 (307) 9 protein:vir:101857 Length: 307 100.0 8E-149 5E-152 832.5 25.0 302 1-309 1-307 (307) 10 protein:vir:100534 Length: 314 100.0 1E-148 9E-152 831.2 26.3 303 1-309 1-314 (314) 11 protein:vir:98189 Length: 307 100.0 2E-148 1E-151 830.2 24.0 300 1-307 1-307 (307) 12 protein:vir:5657 Length: 307 # 100.0 4E-147 3E-150 823.0 24.7 303 1-309 1-307 (307) 13 protein:vir:106985 Length: 276 100.0 1E-126 7E-130 711.1 20.9 271 3-309 1-276 (276) 14 protein:vir:104585 Length: 268 100.0 1E-121 8E-125 683.3 18.9 262 1-309 1-268 (268) 15 protein:vir:104694 Length: 281 100.0 4E-117 2E-120 659.0 24.1 260 3-309 1-281 (281) 16 protein:vir:103004 Length: 268 100.0 2E-117 1E-120 660.2 15.0 261 1-309 1-268 (268) 17 protein:vir:103004 Length: 268 96.1 3.3E-05 2.1E-08 45.1 5.6 216 1-278 25-268 (268) 18 protein:vir:1780 Length: 67 # 27.4 0.89 0.00055 20.9 3.6 61 1-65 1-67 (67) No 1 >protein:vir:7198 Length: 309 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049772;genbank:gi:9632587;genbank:GeneID:1258809 Probab=100.00 E-value=5.8e-170 Score=948.39 Aligned_cols=309 Identities=99% Similarity=1.562 Sum_probs=308.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++|+++++||||+++++ T Consensus 1 m~~~~p~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~yl~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:71 1 MSGYNPQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEERYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhcccceecCCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |||||+|+||++|++++|+|+|||+||||||+||+++|||+|+||+++|+||+||+||+||++++|||+||||||+|+|+ T Consensus 81 v~aVt~i~~t~~gs~~t~dg~aty~w~~dfi~g~~gi~g~~~~s~~~~~~pn~fg~dl~Y~~~l~sy~~m~qd~l~~~pd 160 (309) T protein:vir:71 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhcCCcccccccCcccccccccchhhhhhhhhcccccccccccccchhhhhhHHHHHHHHHHHHHHHHhcccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhccccccccccCCcccchhhhhccccchhccceeccCCCcccc Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPDVKQG 240 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 240 (309) ||||++++||+++|||++||++++|+|+|+|+|+++|+++++|||+++++|+|++.++|+||+++|.+|+|++||+++|+ T Consensus 161 ~~~N~~~~~l~i~gnf~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~y~~~~~~l~~~~r~~dp~~~~~ 240 (309) T protein:vir:71 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPNVKQG 240 (309) T ss_pred cccccccceEEEEEeeeecceEEEEEeeccccccchhhhcchhhccccccccccceehhcccchhhhcceeccCCcchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 241 ~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.||+||||| T Consensus 241 ~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~~~pP~d~i~g 309 (309) T protein:vir:71 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGILVG 309 (309) T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCcceeC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:103451 Length: 309 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803103;genbank:gi:116326383;genbank:GeneID:4405480 Probab=100.00 E-value=1.1e-169 Score=946.78 Aligned_cols=309 Identities=100% Similarity=1.572 Sum_probs=308.2 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++++||+++++||||+++++ T Consensus 1 ms~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~i~~de~~~~~gv~d~~~~~ 80 (309) T protein:vir:10 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCchhhhhccceeeccCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |||||+|+||++|++++|+|+|||+||||||+||+++|||+|+||+++|+|||||+||+||++++|||+||++||+|+|+ T Consensus 81 v~avt~i~~t~~gs~~s~dg~aty~w~~dfi~g~~~v~g~~~~s~~~~~~pn~~g~dl~y~~~l~sy~~m~~d~l~~~pd 160 (309) T protein:vir:10 81 VFAVTRILRTNVGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) T ss_pred hhhhhhhhhcccccccccCcccccccccchhhhhhhhhcccccccccccCcccceehhHHHHhHHHHHHHHHHHhcccCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhccccccccccCCcccchhhhhccccchhccceeccCCCcccc Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPDVKQG 240 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 240 (309) ||||++++||+++|||++||++++|+|+|+|+|+++|+++++|||+++++|+|++.++|+||+++|++|||++||+++|+ T Consensus 161 ~~yN~~~~~l~i~gn~~~~~~i~~e~~~k~y~d~~~~v~~~~g~~~~~~~d~~~~~~~~~~~~~~l~~~~r~~dp~~~~~ 240 (309) T protein:vir:10 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPDVKQG 240 (309) T ss_pred ceeccccceEEEEEeeecCceEEEEEecchhcccchhhccccccccccCcccccccccccccchhhhcceeccCCcchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 241 ~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++++||+||||| T Consensus 241 ~YNn~WvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreeL~~l~pP~~~i~G 309 (309) T protein:vir:10 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCcccccC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:6889 Length: 308 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861865;genbank:gi:32453656;genbank:GeneID:1494291 Probab=100.00 E-value=4.5e-161 Score=899.64 Aligned_cols=308 Identities=85% Similarity=1.437 Sum_probs=304.6 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+ |+++++|+|++++.+ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~-d~~~k~g~f~~~d~~ 79 (308) T protein:vir:68 1 MSGYNAQNPKELKDVILRRLGAPIVNVELTTDQIYDCISRALELYGEYHFDGLNKGFHVFFVDD-EEKYRHGVFDMRGSN 79 (308) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEeCh-hhhhccceeecCCcc Confidence 9999999999999999999999999999999999999999999999999999999999999996 557889999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |+|||+|+||++|++++|+|+|||+||||||+||++++|++++||+++|+||+||+++|||+|+++||+||+|||+|.|+ T Consensus 80 v~avT~i~rt~~gs~~t~dg~a~Y~~~~dfv~g~~g~~g~~~~~~~~~~g~n~~g~~lgy~~~~~~Y~~~l~dl~~p~~~ 159 (308) T protein:vir:68 80 VFAVTRIIRTNVGSITSMDGNATYPWFTDFLLGMAGVSGGMGSNCGKFYGPNAFGADLGYYSQLVSYMGMLQDMIAPLPD 159 (308) T ss_pred chhhhhhhhccccccccccccccccccCceeeeecccCcccccccchhcccccccchhhhHHHHHHHHHHHHHhcccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhccccccccccCCcccchhhhhccccchhccceeccCCCcccc Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPDHNLVGRVVGQDPDVKQG 240 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 240 (309) ||||+++++|+|+|||++||++++|+|||+|+|+.+|+++++||+++++.+.|.++..|++|++++++|||+++|+++|+ T Consensus 160 ~~~n~~~~ql~i~~n~~~~d~~i~e~~~ks~le~~~~v~n~~~y~~~~~rl~~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 239 (308) T protein:vir:68 160 FWFNSANEQLKVMGNFRQKDVIIVESYVRSYIETHKMVGNTVGYGQVGPRDSWSISERYDNPDHNLVGRRVGEDPATKQG 239 (308) T ss_pred cccCCcceeEEEeeeeccCceEEEEEeeecccccchhhccceeeeeecccccCccccccccchhhheeeeeccCCCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 241 AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 241 ~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.||+||||| T Consensus 240 ~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~pP~~~i~g 308 (308) T protein:vir:68 240 AYNNRWVKDYASALAKELNGQILAKHQGMMLPGGVTVDGVRLIEEARLEKEALREELYLLDPPAGILVG 308 (308) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCceeeC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:107900 Length: 311 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595289;genbank:gi:161622595;genbank:GeneID:5783619 Probab=100.00 E-value=5.4e-158 Score=882.78 Aligned_cols=307 Identities=66% Similarity=1.178 Sum_probs=297.8 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchh-hhhccCeeeccCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDE-EKYKTGVFDLRGS 79 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d-~~~~~g~~~~~~~ 79 (309) |+ ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|++| +++++|+|++++. T Consensus 1 MA-~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~ALely~EyHydG~~k~y~~~~it~dd~~~~~~g~~d~~~~ 79 (311) T protein:vir:10 1 MA-SESYNPKQLKDAILRRLGAPITNIEVTTDQVYDCIQRALELYGEYHYNGYNKGYQAFYIGHDDEEKFRNGVFDLKGR 79 (311) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEecchhhhhccCCceecCCc Confidence 88 889999999999999999999999999999999999999999999999999999999999987 5888899999999 Q ss_pred CceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCccc Q lcl|NC_012635. 80 NVFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIP 159 (309) Q Consensus 80 ~v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p 159 (309) +|+|||+|+|+++|++++|+|+|||+||||||+||++++|++++||+ .|+||+||++|+||+||++|++||+|||+|+| T Consensus 80 ~v~avt~i~~t~~gs~~s~dg~atY~w~~d~v~G~~~v~g~~~s~~~-~~g~n~fg~~lgyf~~l~~Y~~~l~dl~~p~~ 158 (311) T protein:vir:10 80 NIFAVTQILRTNVGSLTSMDGQATYPWFTDFVLGLAGINGGLGSSCN-SFGPNAFGADLGYFTQLMQYRSMMQDLLVPLP 158 (311) T ss_pred chhHHHHhhccccccccCCCCcccccccCchhhhhhhhhcccccccc-ccccccccchHHHHHHHHHHHHHHHHhhcccc Confidence 99999999999999999999999999999999999999999999886 59999999999999999999999999999999 Q ss_pred ceeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhcccccccccc---CCcccchhhhhccccchhccceeccCCC Q lcl|NC_012635. 160 DFWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVG---PQDSWSLSERYNNPDHNLVGRVVGQDPD 236 (309) Q Consensus 160 ~~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~l~~~~~~~~p~ 236 (309) |||||++|++|+++|||++||+|++|+|+|+|+|+++|+++++||++++ .+|+|+++++|+||+++|..+++++||+ T Consensus 159 d~~yn~~t~~l~i~gnf~~g~~i~~e~~~k~~~~v~~~v~~~~~~~~~~~~~~~d~~~~~~~~~n~~~~l~~~rag~dp~ 238 (311) T protein:vir:10 159 DYWYNDATEQLKVMGNFVKGDFIVIEVYTRSFNGVDSMVGNTAGYGYASGGCDENEWSPGAIWDNPARRISGMRAGEDLG 238 (311) T ss_pred ccccccccceEEEeeccccccEEEEEEeccccccchhhhhhhhhhhcccccccccccccchhhcccccccccceeecCcc Confidence 9999999999999999999999999999999999999999999999875 4799999999999999888555668999 Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 237 VKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 237 ~~~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++++|++++|| T Consensus 239 ~~~~~YNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~LreEl~~~~~Pp~~liG 311 (311) T protein:vir:10 239 LQDGAYNNRWVKDYATALVKEVNGNILAKHQGMQLAGGTTVDGIRLIEEARLEKERLREELDLLDPPTPILIG 311 (311) T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCchhccC Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:81013 Length: 310 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469493;genbank:gi:157311450;genbank:GeneID:5602275 Probab=100.00 E-value=7.4e-155 Score=865.57 Aligned_cols=307 Identities=64% Similarity=1.125 Sum_probs=295.5 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++ .++|+|++++.+ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~--~~~g~~d~~d~~ 78 (310) T protein:vir:81 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQ--AQHGVFDLSDSG 78 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhh--hcCCeeeeCCcc Confidence 999999999999999999999999999999999999999999999999999999999999999655 678999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |+|||+|+||++|++.+++|+|||+||||||+||++++|++++||.++|+||+||++|+||++|+|||+|+|+||+|+|+ T Consensus 79 v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpd 158 (310) T protein:vir:81 79 VFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPD 158 (310) T ss_pred eeeeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhcccccccc-ccCCcccchhhhhccccchhccceeccCC--Cc Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGT-VGPQDSWSLSERYNNPDHNLVGRVVGQDP--DV 237 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~l~~~~~~~~p--~~ 237 (309) ||||++++||+|+|||++||++++|+|+|+|+|+.+++++++|++. ++++++|+++..|+||+..+..|+.+++| .. T Consensus 159 y~yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310) T protein:vir:81 159 YWYNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISEN 238 (310) T ss_pred cccCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCc Confidence 9999999999999999999999999999999999999999999666 59999999999999999887766666643 23 Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 238 KQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 238 ~~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++++||+||||= T Consensus 239 ~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:81 239 KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 599999999999999999999999999999999999999999999999999999999999999999999777 No 6 >protein:vir:6589 Length: 310 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891720;genbank:gi:33620666;genbank:GeneID:1725419 Probab=100.00 E-value=7.4e-155 Score=865.57 Aligned_cols=307 Identities=64% Similarity=1.125 Sum_probs=295.5 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++ .++|+|++++.+ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alely~EyHydG~~k~yl~~~ited~--~~~g~~d~~d~~ 78 (310) T protein:vir:65 1 MSGYVTNNPRELKDAILRRLGAPVINVEVTEDQIYDCIQRALELYGEYHFDGVNKGYKVFRVSAEQ--AQHGVFDLSDSG 78 (310) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhh--hcCCeeeeCCcc Confidence 999999999999999999999999999999999999999999999999999999999999999655 678999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |+|||+|+||++|++.+++|+|||+||||||+||++++|++++||.++|+||+||++|+||++|+|||+|+|+||+|+|+ T Consensus 79 v~avt~i~~t~~g~~~t~dg~a~Y~~~~d~v~Gi~~v~g~~~~~~~~~~~~~~~g~~l~y~~~l~~y~~~~q~~ln~lpd 158 (310) T protein:vir:65 79 VFAVTKIIRTNVGSAATMDGTAVYPWFTDFLLGLAGVNGGLGSGCSKFYGPNAMGGDLGYFEQLMSYRATMQNMLNPLPD 158 (310) T ss_pred eeeeehhhhccccccccccccccccccCceeeeeccccccccchhhhhccccccchhhhhhhHHHHHHHHHHHHhCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhcccccccc-ccCCcccchhhhhccccchhccceeccCC--Cc Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGT-VGPQDSWSLSERYNNPDHNLVGRVVGQDP--DV 237 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~l~~~~~~~~p--~~ 237 (309) ||||++++||+|+|||++||++++|+|+|+|+|+.+++++++|++. ++++++|+++..|+||+..+..|+.+++| .. T Consensus 159 y~yn~~~~ql~i~~nf~~gd~ii~e~~~ks~le~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310) T protein:vir:65 159 YWYNSANGQLKITGNFREGDLIVVELYVKSYVDVPDMIGAVAGYAHAGGCSTAGGISAVYDNPTAGLSGIVAGMGPISEN 238 (310) T ss_pred cccCCccceeeeeeecccCcEEEEEEEeecccCchhhhhcccceeEEcccCCccccccccccchhhhceeeeecccCCCc Confidence 9999999999999999999999999999999999999999999666 59999999999999999887766666643 23 Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 238 KQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 238 ~~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++++||+||||= T Consensus 239 ~~~~YNnrWvKdYaTAL~K~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~pP~~i~~~ 310 (310) T protein:vir:65 239 KQGAYNNRWVKDMATAFTKEVWGSIMAKHQGLQLPGGVTVDGIRIIEEARADIEKLRQELELLDPPFGILMI 310 (310) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeC Confidence 599999999999999999999999999999999999999999999999999999999999999999999777 No 7 >protein:vir:106428 Length: 306 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944100;genbank:gi:38640144;genbank:GeneID:2658189 Probab=100.00 E-value=9.2e-151 Score=843.13 Aligned_cols=302 Identities=46% Similarity=0.792 Sum_probs=293.4 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++ ++++|+||+++++ T Consensus 2 Ms~~~~~s~~eLkdyiLRrLGAPii~IeVtd~Qi~DcIdrAlely~EyHydG~~k~y~~~~i~ed--~~~~g~~d~~~~~ 79 (306) T protein:vir:10 2 MSNNFVRNPRELKDLILRRLGAPVIQVEVTEDHIYDSIGRALELYKEYHHDGLNKAYLSVKLNQE--QAATGYIDISAYP 79 (306) T ss_pred CCccCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHHhhhhccccccceEEEEechh--cccCCeEecCCcc Confidence 99999999999999999999999999999999999999999999999999999999999999854 5789999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |++||+|+|+++|++++|+|+|+|+|++||++||++++ +|+++||||+||+||+||++++|||+|+|+||+|+|| T Consensus 80 v~aVtkI~r~~~g~~~tm~Gna~~~~~q~FL~~l~~~~-----~~~~~~g~~~~g~dL~yy~~~~sy~~~lq~ml~p~pD 154 (306) T protein:vir:10 80 VFAITKIIRHKSMMWGGLGGGATLNFFTDFLTTLGGGP-----QGISYHGPFGALGNIGFFAQFQSYQNMMMDQLDPLPD 154 (306) T ss_pred ceeeeeeeccCcceeeeccccccccchhhhhhhhcccc-----cchhhccchhhhhhhhHHHHHHHHHHHHHHHhccccc Confidence 99999999999999999999999999999999999865 4778999999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhccccccccc-cCCcccchhhhhccccchhccceeccCCC--c Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTV-GPQDSWSLSERYNNPDHNLVGRVVGQDPD--V 237 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~l~~~~~~~~p~--~ 237 (309) ||||+++++++|.+||++||.+++|+++|+|+|+++++++++||+++ ++++.|....+|.||++.|.+.+++++|+ . T Consensus 155 f~~n~~~~ql~i~~nf~~~D~l~~e~~~ks~~~v~~~~~~~~g~g~~~~~~~~~~~~~~~~np~~~l~~~~~g~~~~~~~ 234 (306) T protein:vir:10 155 YWLDPVNGVVQLTGNFRENDVIIMEVHIQNFVELEKSVRGVAGAGIVAGGPTSADNKDKWMNPYSRMPSNVAGRARSEFP 234 (306) T ss_pred eeEcCCcceEEEEEeecCCcEEEEEeecccccccchhhhcccccccccCCccccchhhhhccchhhhccccccccCCCcc Confidence 99999999999999999999999999999999999999999999998 56678899999999999999999999887 4 Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 238 KQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 238 ~~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) +|++|||||||||||||+|++|||||+|||||||||||||||+|||+||++|||+|||||+++.||+||+|| T Consensus 235 ~~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGVTvdG~~i~eeA~~E~e~LreEL~~~~~~ppi~mg 306 (306) T protein:vir:10 235 DQGVYNVRWVKDYATTLTKEVWGEILAKHQGMSLPGGVTVDGTRLVEEARQEKEVLRQELLLLEEPLPILMG 306 (306) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHhhhccCCCccccC Confidence 699999999999999999999999999999999999999999999999999999999999999999999999 No 8 >protein:vir:101153 Length: 307 # NCBI annotation: neck protein # Family: family:all:1103 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932504;genbank:gi:37651630;genbank:GeneID:2610646 Probab=100.00 E-value=7.9e-149 Score=832.54 Aligned_cols=302 Identities=57% Similarity=1.013 Sum_probs=287.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) || ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++ |++.++|+|++++++ T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~it--e~~~~~g~~d~~d~~ 77 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLT--EQQAKTGIIDMKGGN 77 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEec--hhhccCCEEecCCcc Confidence 99 669999999999999999999999999999999999999999999999999999999998 557889999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |||||+|+||++|++++|+|+|||||||||++|+++++++ +|| ++|+||+||++++||++++|||.||++||+|+|| T Consensus 78 v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~--~~~-~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d 154 (307) T protein:vir:10 78 VFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIG--GQC-KWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPD 154 (307) T ss_pred hhhhhhhhhhccccccccCcccccccccccceeecCCccc--eee-eeecccccccchhhhhHHHHHHHHHHhhcccccc Confidence 9999999999999999999999999999999999997754 455 6899999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhh-ccccccccccCCcc--cchhhhhccccchhccceeccCCCc Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMV-GNTVGYGTVGPQDS--WSLSERYNNPDHNLVGRVVGQDPDV 237 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~-~~~~~~~~~~~~d~--~~~~~~~~~~~~~l~~~~~~~~p~~ 237 (309) ||||++|++|+|+|||++||+|++|+|+|+|+++.+|+ ++.+||||++++++ |...+.|+||+ ++++|+|+.+|++ T Consensus 155 ~~yn~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ 233 (307) T protein:vir:10 155 FYYNSSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPN-LAGGAIYAGGSNG 233 (307) T ss_pred eeecCCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCch-hhcccccccCccc Confidence 99999999999999999999999999999999999998 55689999988865 55667888876 7899999999998 Q ss_pred cc--ccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 238 KQ--GAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 238 ~~--~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++ ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.||+||+|| T Consensus 234 ~t~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 234 MLKDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 76 7999999999999999999999999999999999999999999999999999999999999999999999 No 9 >protein:vir:101857 Length: 307 # NCBI annotation: gp13 neck protein # Family: family:all:1103 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238876;genbank:gi:66391951;genbank:GeneID:3416684 Probab=100.00 E-value=7.9e-149 Score=832.54 Aligned_cols=302 Identities=57% Similarity=1.013 Sum_probs=287.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) || ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++ |++.++|+|++++++ T Consensus 1 m~-~~~~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~it--e~~~~~g~~d~~d~~ 77 (307) T protein:vir:10 1 MS-YTCNNPLELKDAILRRLGAPIVHVEVTEEQVFDCISRALELYGEYHYDGFHRTYATVVLT--EQQAKTGIIDMKGGN 77 (307) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEec--hhhccCCEEecCCcc Confidence 99 669999999999999999999999999999999999999999999999999999999998 557889999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |||||+|+||++|++++|+|+|||||||||++|+++++++ +|| ++|+||+||++++||++++|||.||++||+|+|| T Consensus 78 v~avt~iirt~~~~~~t~dG~a~y~w~~d~~~g~~g~~~~--~~~-~~~~~n~~g~~l~y~t~l~sy~~~m~d~~~pl~d 154 (307) T protein:vir:10 78 VFAVTQVLRTNVGSIITMDGTAVYPWFTDFVMGMTGASIG--GQC-KWYGPNAFGGDLGYFTQLMSYRSMMGDLLSPLPD 154 (307) T ss_pred hhhhhhhhhhccccccccCcccccccccccceeecCCccc--eee-eeecccccccchhhhhHHHHHHHHHHhhcccccc Confidence 9999999999999999999999999999999999997754 455 6899999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhh-ccccccccccCCcc--cchhhhhccccchhccceeccCCCc Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMV-GNTVGYGTVGPQDS--WSLSERYNNPDHNLVGRVVGQDPDV 237 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~-~~~~~~~~~~~~d~--~~~~~~~~~~~~~l~~~~~~~~p~~ 237 (309) ||||++|++|+|+|||++||+|++|+|+|+|+++.+|+ ++.+||||++++++ |...+.|+||+ ++++|+|+.+|++ T Consensus 155 ~~yn~~t~~l~i~~nf~~~d~i~~e~~~k~yle~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~ 233 (307) T protein:vir:10 155 FYYNSSSEMMKIAGQFKAGDLIVFEVYCKSYANVDTMLAGTSAGYGFAMSCDGDEPSQSQLYGNPN-LAGGAIYAGGSNG 233 (307) T ss_pred eeecCCceeEEEeeeccCCceEEEEEEeccccchhhhhhcccccceEeeccccCCccchhhcCCch-hhcccccccCccc Confidence 99999999999999999999999999999999999998 55689999988865 55667888876 7899999999998 Q ss_pred cc--ccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 238 KQ--GAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 238 ~~--~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++ ++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++.||+||+|| T Consensus 234 ~t~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTldG~~i~eeA~~E~e~LreeL~~~~~~ppi~mg 307 (307) T protein:vir:10 234 MLKDGAYNNRWVKDMSTAYVKELNGQVLAKHQGMQLPGGITIDGVRLIEEARIDIDKLRNELELLDAPPPIIMG 307 (307) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 76 7999999999999999999999999999999999999999999999999999999999999999999999 No 10 >protein:vir:100534 Length: 314 # NCBI annotation: gp13 head completion protein # Family: family:all:1103 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656375;genbank:gi:109290126;genbank:GeneID:4156512 Probab=100.00 E-value=1.4e-148 Score=831.19 Aligned_cols=303 Identities=59% Similarity=1.016 Sum_probs=287.7 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) || ++|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++| |++.++|+|+++..+ T Consensus 1 ma-~~~~s~~eLkdyiLRrLGAPvi~InVtddQI~DcId~ALqlf~EyHyDG~~k~yl~~~it--e~~~k~g~~d~~~~~ 77 (314) T protein:vir:10 1 MS-YTTNNPLELKDAILRRLGAPIVHVEVTEQQVFDCISRALELYGEYHYDGFHKTYATVVLT--EEQAKTGVISFAGGN 77 (314) T ss_pred CC-CCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEec--hhhhcCCEEeeCCcc Confidence 98 679999999999999999999999999999999999999999999999999999999998 457779999999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |+|||+|+||++|++++|+|+|||+|||||++||++++++. || ++|+||+||++++||+|+++||+||++||+|+|| T Consensus 78 v~avt~i~rt~~~~~~~~~g~a~Y~~~~d~~lG~~~~~~~~--~~-~~~~pn~fg~~~~yf~~~m~y~~ml~d~~~pl~d 154 (314) T protein:vir:10 78 VFAVTQVIRTNIGSIITMDGTAVYPWFTDFVMGMTGASIGG--QC-RWYGPNAFGADLGYFTQLMSYRDMMGDMLSPLPD 154 (314) T ss_pred ceehhhhhhcccccccccCccccccccCceeeeeccccccc--cc-ceeccccccchhHHHHHHHHHHHHHHhhhccccc Confidence 99999999999999999999999999999999999999763 44 3899999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhh--------ccccccccccCCcc--cchhhhhccccchhccce Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMV--------GNTVGYGTVGPQDS--WSLSERYNNPDHNLVGRV 230 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~--------~~~~~~~~~~~~d~--~~~~~~~~~~~~~l~~~~ 230 (309) ||||++|++|+|+|||+++|+|++|+++|+|+|+++++ ++.+||+|++++|+ |....+|.||+..+.+.+ T Consensus 155 ~~~n~~~~~l~i~~nf~~~Dll~~e~~~k~~~~~d~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~nP~~~~~~~~ 234 (314) T protein:vir:10 155 FFFNSTTEMMRVAGKLQKGDLLVFEVYCKSYANVDSMLSGVDSTLSGTSAGYGFAMSDDDSVPSVAQKYANPNMSHGQIY 234 (314) T ss_pred ccccCCcceEEEeecccCCcEEEEEEEeccccccchhccccccccceeeeeceecccccccchhhhhhhcCcccccceee Confidence 99999999999999999999999999999999999998 67788999999887 555568999999999998 Q ss_pred eccCCC-cccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 231 VGQDPD-VKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 231 ~~~~p~-~~~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++++.. .+|++|||||||||||||+||||||||+|||||||||||||||+|||+||++|||+|||||+++.||+|+.|| T Consensus 235 ~g~~~~~~~~~~yNnrWvKdYaTALvK~~wGqnL~K~qG~qLPGGVTldG~~l~eea~~E~e~Lreel~~~~~~pp~~mg 314 (314) T protein:vir:10 235 AGQSNGMSKDNSYNNRWVKDMATAFVKELNGQVLAKHQGMQLPGGVTIDGIRLIEEARIDIDKLRQELELLDGPPPIIMG 314 (314) T ss_pred eccccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCcccCCceeecHHHHHHHHHHHHHHHHHHHhhccCCCccccC Confidence 877544 4699999999999999999999999999999999999999999999999999999999999999999999999 No 11 >protein:vir:98189 Length: 307 # NCBI annotation: gp13 head completion # Family: family:all:1103 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239190;genbank:gi:66391665;genbank:GeneID:3416291 Probab=100.00 E-value=2.1e-148 Score=830.18 Aligned_cols=300 Identities=52% Similarity=0.929 Sum_probs=286.3 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) |.- +||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++|. +|++++++++ T Consensus 1 m~t---~s~~eLKdyiLRrLGAPvi~InVtd~Qi~DcId~ALqly~EyHydG~~k~y~~~~i~~d~~---~~~~~~~~~~ 74 (307) T protein:vir:98 1 MIT---NNPEQLKDEILRRLGAPIIKIEITQDQIYDCIQRALDLYAEYHYNGTNKSYIILTLGEDNP---RNVFDLSKEH 74 (307) T ss_pred CCc---CCHHHHHHHHHHhcCCceeEEecCHHHHHHHHHHHHHHHHhhhcccccceeEEEEeccccc---ccceecCCch Confidence 773 9999999999999999999999999999999999999999999999999999999998775 5899999999 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |||||+|+|+++|++++|+|+|||+|||||++||++.++| +++|+++||||+||++|+||+|+++|++|++++|+|+|+ T Consensus 75 v~aVT~iirt~~g~~~s~dg~aty~w~~d~~~g~~~~~~g-~~~~s~~~g~n~~g~~l~yf~q~~~Y~~~l~dl~~p~~d 153 (307) T protein:vir:98 75 IFAVTKVLRTNIGSLVSMDGTAVYPWFTDFLMGLTGGSLG-GRCASSVYGMNAYGADLGYFTQMMSYQRSMQELLAPLPD 153 (307) T ss_pred HhHHHHHhhcCccceecccccccccccCcceeecCCcccc-cccccceecCccccchHHHHHHHHHHHHHHHHhhccccc Confidence 9999999999999999999999999999999999998776 578999999999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhccccccccccCCc--ccchhhhhccccchhccceeccCCCcc Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQD--SWSLSERYNNPDHNLVGRVVGQDPDVK 238 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~l~~~~~~~~p~~~ 238 (309) ||||+++++|++.|||++||+|++|+|+|+|+|+++++++++||++++.+. .|.+++.|+||+.++++|||+.+|+++ T Consensus 154 y~yn~~~~~l~~~gn~~~~d~i~~e~~~ks~ld~~~~i~~~~~y~~~~~~~~~d~~~~d~~~n~y~~~~~~yra~~~~~~ 233 (307) T protein:vir:98 154 YWYNDDTGQFCVWGKVNNGDIIVIEVMVRSFVDVPSAVGSVAGYATAGSNAVEDQSIADIYDNPYNAVVGGVRAGQGTTV 233 (307) T ss_pred eeecCcccceeeeeccccCceEEEEEeecccccchHHhcccccceeecccccccccchhhccchhhhhhcceeecCCCCc Confidence 999999999999999999999999999999999999999999999997775 589999999999999999999999887 Q ss_pred ---cccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHH--hccCCCcee Q lcl|NC_012635. 239 ---QGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELY--LLDPPFGIF 307 (309) Q Consensus 239 ---~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~--~~~pPl~~i 307 (309) +++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+ +..||++|| T Consensus 234 ~~~t~aYNnrWvKdYaTALvK~~wGq~L~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~~ppi~mi 307 (307) T protein:vir:98 234 TGGTSAYNNRWVKDYSTALVKEINGQILAKFQGMQLPGGVAPDGTRLIQEAETKLQGLRDELISMSDAVPIIMV 307 (307) T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHhhcCCCCccccC Confidence 559999999999999999999999999999999999999999999999999999999996 455566666 No 12 >protein:vir:5657 Length: 307 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899596;genbank:gi:34419583;genbank:GeneID:2545698 Probab=100.00 E-value=4.3e-147 Score=823.03 Aligned_cols=303 Identities=45% Similarity=0.781 Sum_probs=289.9 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+++|+||+|||||||||||||||||||||+|||||||||||+||||||||++|+|++|++| |++.++|+|++ +++ T Consensus 1 m~~~~~~s~~eLkdyiLRrLGAPvi~InVtd~Qi~DcId~Alqly~EyHydG~~k~y~~~~vt--e~~~~~G~~d~-~~~ 77 (307) T protein:vir:56 1 MQAYNATSPREMKDLILRRLGAPIVNVEVSEDQVYDCISRALELYIEYHPDGVNKTYSIISLS--EEQAQTGIIDL-DIP 77 (307) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccccccceEEEEec--hhhccCCeEec-Ccc Confidence 999999999999999999999999999999999999999999999999999999999999998 45788999999 679 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) |+|||+|+|++ |+.++++|+|||+|||||++|+++++|+ ++|+++++|+++|++|+||++++||++|++++|+|+|+ T Consensus 78 v~avt~Iirt~-~s~~t~dg~aty~w~tdfi~~~~gv~g~--~~~~~~~~~~~~~~~l~y~~~~~sy~~~l~d~~~p~~d 154 (307) T protein:vir:56 78 ATAITKILRAE-SSFFTMDGNATYSWFSDFLQGLAGGPGA--GSCNSYHQGMLGQGSLSDYWNLMSYKNMLTDLLSPEYD 154 (307) T ss_pred hhhhhhhhccC-cccccCCCccccCccccceecccccccc--cceeeecccccchhhhhHHHHHHHHHHHHHhhcccccc Confidence 99999999999 9999999999999999999999999986 78999999999999999999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhccccccccc--cCCcccchhhhhccccchhccceeccCCCcc Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTV--GPQDSWSLSERYNNPDHNLVGRVVGQDPDVK 238 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~l~~~~~~~~p~~~ 238 (309) ||||++++||+++|||++||++++|+|+|+|+++..++++++||+++ +....|..++.|+||+.++...+.+.||+++ T Consensus 155 ~~yn~~~~qL~~~~n~~~g~~~ive~~~~s~~~~~~~~~~~~~~~~~~~r~y~~~~~~~~~~n~~~~~~~~~~~~dp~~~ 234 (307) T protein:vir:56 155 YWYNGVNKQLRINANLSAGELIVVEAFVPSALLVSESATGIIGNKAATIGSYEDTTAQERWDDPYSILRQNNTIGNPNQF 234 (307) T ss_pred eeecCcceeeeeeeeeccCCeEEEEeeccchhhhhhhhhhhcceeeecCcccccCCchhhccCcceeeeccccccCCccc Confidence 99999999999999999999999999999999999999999999997 4458999999999997755544446899999 Q ss_pred cc--cccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhccCCCceeeC Q lcl|NC_012635. 239 QG--AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLDPPFGIFVG 309 (309) Q Consensus 239 ~~--~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~pPl~~i~G 309 (309) ++ +|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++++|++++|| T Consensus 235 t~~~~YNn~WvKdYaTALvK~~wGqnL~K~qG~qLPGGVTlnG~~i~eeA~~E~e~LreEl~~~~~P~~~liG 307 (307) T protein:vir:56 235 AEQNAYSVRWVKDMATAMTKQMNGVILKKHQGLQLPGGITIDGKEIYDEATQEIERLREELMSLTVPLGVFMG 307 (307) T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCCchhhcC Confidence 75 999999999999999999999999999999999999999999999999999999999999999999999 No 13 >protein:vir:106985 Length: 276 # NCBI annotation: neck protein gp13 # Family: family:all:1103 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195127;genbank:gi:58532904;uniprot:Q5GQW0;genbank:GeneID:3260482 Probab=100.00 E-value=1.1e-126 Score=711.13 Aligned_cols=271 Identities=24% Similarity=0.366 Sum_probs=246.2 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCCce Q lcl|NC_012635. 3 GYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSNVF 82 (309) Q Consensus 3 ~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~v~ 82 (309) -|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++|+... T Consensus 1 ma~p~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~dd~~~~------------ 68 (276) T protein:vir:10 1 MAKPSSKQELIDYCKRQLGAPVLQINTDSAQDDDIIDQAIQYYHEYHFDGIERMYLKHQFTADDVTRF------------ 68 (276) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHhhhh------------ Confidence 46999999999999999999999999999999999999999999999999999999999998887642 Q ss_pred eEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCccccee Q lcl|NC_012635. 83 AVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPDFW 162 (309) Q Consensus 83 avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~~~ 162 (309) ++++.++++|++++|+|+|||+||||||+||++++|| |.++++||+||++++||. ++| T Consensus 69 -~~~~~~~~~~s~~~~~g~~~Y~~~pd~v~gi~~v~~g----~s~~~g~n~f~~~~q~fl--~d~--------------- 126 (276) T protein:vir:10 69 -TSSDQLTTAPNNDDWENRNNYIQVPDAVIGISKVFGV----SSNFLRNNLFGLSNQYYL--MDL--------------- 126 (276) T ss_pred -hhhhhcccccceeeeeccCcceecCcchhhhhhhccc----CccccCCccccccHHHHH--HHH--------------- Confidence 4457889999999999999999999999999999974 447899999999999993 344 Q ss_pred eccccCeEEEeeccccceeEEEeeehhhhcchhhhhccccccccccCCcccchhhhh----ccccchhccceeccCCCcc Q lcl|NC_012635. 163 FNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERY----NNPDHNLVGRVVGQDPDVK 238 (309) Q Consensus 163 fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~~~l~~~~~~~~p~~~ 238 (309) ||..+++|+++|||+.+|++++|.|.++ +|.-...+..+||+|++++++|+++..| +||+ ++++|+|+.||+++ T Consensus 127 ~~~~~~ql~~~g~~~~~dy~~ve~~~~~-id~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~r~~dP~~~ 204 (276) T protein:vir:10 127 FSFSTGSAFSFGNFDLTNYYMIKQHFET-IDMIINTGSLIEYRFNKRQDRLYIDIDTSRIVEDQY-LLIDCYRYLNPDDF 204 (276) T ss_pred hcccccceeeccceeeeeEEEEEEEecc-cceeecCCceeEEeeeccCCccccccccccccCCHH-HHhhcccccCCccc Confidence 6888999999999999999999999986 4444444667889999999999997555 4454 79999999999999 Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHh-ccCCCceeeC Q lcl|NC_012635. 239 QGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYL-LDPPFGIFVG 309 (309) Q Consensus 239 ~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~-~~pPl~~i~G 309 (309) |++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++ +++|..++|| T Consensus 205 ~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~miG 276 (276) T protein:vir:10 205 TQVYDDSFVKRYATALLKRQWGQNLIKYNSVQLPGGITLNGRQIWEDGNNEVRELESRMMTDYSLPPMDMIG 276 (276) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCceeecC Confidence 9999999999999999999999999999999999999999999999999999999999974 5778888899 No 14 >protein:vir:104585 Length: 268 # NCBI annotation: gp13 # Family: family:all:1103 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214649;genbank:gi:61806290;genbank:GeneID:3294640 Probab=100.00 E-value=1.3e-121 Score=683.32 Aligned_cols=262 Identities=22% Similarity=0.367 Sum_probs=242.0 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++. T Consensus 1 m~~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~f~vT~~~r------------- 67 (268) T protein:vir:10 1 MSATRPASKTELKDYALRRLGFPTIDINVATEQLDDLVEEAIDYYQEYHYNGSFQTFMRIEVTEAIK------------- 67 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhcccccccceEEEEechHHh------------- Confidence 9999999999999999999999999999999999999999999999999999999999998876553 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) ++.+++ +++|+++|+|+++|+ .++||+||+ +++|+++++|+.++++||+|+|+ T Consensus 68 ---------t~~~~~-t~~~t~~~~~~~nyi----------------~~p~~~~Gv-~~vf~~~~~~~~~~~nm~~~~~q 120 (268) T protein:vir:10 68 ---------TQAKGF-TQEGSTPWYGQDNYV----------------STPPGTLGI-NHVYTNIGASSIVPGNIFNIKYQ 120 (268) T ss_pred ---------hccccc-cccccccccCCCcce----------------ecCccccch-hhhhccccccccccchhhcccch Confidence 334444 567777777655544 589999998 89999999999999999999999 Q ss_pred eeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhccccc--cccccCCcccchhhhhccc---cchhccceeccCC Q lcl|NC_012635. 161 FWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVG--YGTVGPQDSWSLSERYNNP---DHNLVGRVVGQDP 235 (309) Q Consensus 161 ~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~~l~~~~~~~~p 235 (309) ||||+.+ ||.++|++..|+.+++++|++.++++.++ ++++.++++|+++..|++| ++++++|+|++|| T Consensus 121 ~~lnd~~-------~~~~~~i~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~l~~~~~~~dp 193 (268) T protein:vir:10 121 IFLNDIY-------SMTHGQILHYFLTSQYLETLDFVTNSQANRRVKWNEHSNRLYLDFDWDDLTVGDYIMVDMTMRQDP 193 (268) T ss_pred hhccccc-------cccceeEEEEEEeeeeecchhhhhccCCCcceeeecccCceeeeeeccCcccchhhhhhhhhccCC Confidence 9999964 68899999999999999999999998764 6667899999999999998 7899999999999 Q ss_pred CcccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHH-hccCCCceeeC Q lcl|NC_012635. 236 DVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELY-LLDPPFGIFVG 309 (309) Q Consensus 236 ~~~~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~-~~~pPl~~i~G 309 (309) +++|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+ .+++|.+++|| T Consensus 194 ~~~~~~YNn~WvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eea~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 194 TTFTDMFNDNWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASKFKEDLEKDIRDRYEIPPLDLIG 268 (268) T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeecHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC Confidence 999999999999999999999999999999999999999999999999999999999999996 58889999999 No 15 >protein:vir:104694 Length: 281 # NCBI annotation: T4-like neck protein # Family: family:all:1103 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214352;genbank:gi:61805992;genbank:GeneID:3294213 Probab=100.00 E-value=3.5e-117 Score=659.01 Aligned_cols=260 Identities=26% Similarity=0.434 Sum_probs=229.2 Q ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCCce Q lcl|NC_012635. 3 GYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSNVF 82 (309) Q Consensus 3 ~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~v~ 82 (309) -|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|+++++|. ++|+|+++..+++ T Consensus 1 ma~p~s~~eLkdyiLRrLGAPii~InVtd~Qi~DcId~Alely~EyHydG~~k~y~~~~i~~d~~--~~g~~d~~~~~~~ 78 (281) T protein:vir:10 1 MAKPASRQQLIDYCLRKLGAPVLEINLDDDQIDDSVDDAIQLFNERHFDGVERMFLKYKITQADL--DRGRAKGTDGVGI 78 (281) T ss_pred CCCCCCHHHHHHHHHHhcCCceEEEEcCHHHHHHHHHHHHHHhhhhcccccccceEEEEechhhh--hcceeeecCccee Confidence 46999999999999999999999999999999999999999999999999999999999998776 5799999999999 Q ss_pred eEEEEEeeccceeeecCCcccccccC--------Ccceeeeeeccccce--------eeeeeeccchhh---hhHHHHHH Q lcl|NC_012635. 83 AVTRILRTNIGSITSMDGNATYPWFT--------DFLLGMAGINGGMGT--------SCNRFYGPNAFG---ADLGYFTQ 143 (309) Q Consensus 83 avt~i~r~~~g~~~~~~g~aty~~~~--------d~vlg~s~~~g~~~~--------s~~~~~~~n~fg---~~l~y~~~ 143 (309) +||+|.||+++ |+|+|||+|++ |+++|+++++|+.++ ..++.|.+.+|. ++|.+|.+ T Consensus 79 avt~i~~t~~~----~~G~at~~w~~~~ny~~~p~~v~G~~~~~g~~s~~~~~~~f~~~yq~~lndly~~~~~~L~~y~m 154 (281) T protein:vir:10 79 VTTTATSTNIA----GYGTTTSSWYETSNFLQVPDSVVGIEKIFKFDTSTISGGMFSIKYQLFLNDLYNFNSVELLQYSM 154 (281) T ss_pred EEEeeeccccc----cccccccchhhcccceecCccceeeeeeccccccccCcceeecchhhhhhhhccCCchhhhhhhh Confidence 99999998876 79999999965 999999998875443 344556666663 67888889 Q ss_pred HHHHHHHHHHHhCcccceeeccccCeEEEeeccccceeEEEeeehhhhcchhhhhccccccccccCCcccchhhhhcccc Q lcl|NC_012635. 144 LTSYMGMMQDMLSPIPDFWFNSANEQLKVMGNFQKYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSWSLSERYNNPD 223 (309) Q Consensus 144 l~~y~~~~~~~l~~~p~~~fN~~~~~L~i~gn~~~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 223 (309) ++||+++++.+|++.++|+||.++++|.+. +++ ... .... T Consensus 155 ~~qyl~~~d~v~n~~~~~~~n~~~drL~~d--------------------~d~-------------------~~~-~~d~ 194 (281) T protein:vir:10 155 VKSYLEDIDFLLTTDKQVRFNKRQDRLYLD--------------------IDW-------------------GAE-SLDN 194 (281) T ss_pred hhhhhhhhHhhcCCCceEEEeeeCCeEEEE--------------------Eec-------------------ccc-cCCC Confidence 999999999999999999999999988652 211 001 1235 Q ss_pred chhccceeccCCCcccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHhcc-- Q lcl|NC_012635. 224 HNLVGRVVGQDPDVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYLLD-- 301 (309) Q Consensus 224 ~~l~~~~~~~~p~~~~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~~~-- 301 (309) +++++||++.||+++|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||+++. T Consensus 195 ~~~~~~y~~~dP~~~~~~YNnrWvKdYaTAL~K~~wGq~L~K~qG~qLPGGvTvnG~~i~eeA~~E~e~L~eel~~~~~~ 274 (281) T protein:vir:10 195 FLVLDCYRALDPTSFTQVYNDPFLKLYLTALMKRQWGQNLIKFRGVKLPGGIELNGREIFDDAERDIESLRSRMASEYEL 274 (281) T ss_pred ceEEeeeeccCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCccCCCceeecHHHHHHHHHHHHHHHHHHHhhccCC Confidence 678999999999999999999999999999999999999999999999999999999999999999999999998655 Q ss_pred CCCceeeC Q lcl|NC_012635. 302 PPFGIFVG 309 (309) Q Consensus 302 pPl~~i~G 309 (309) ||++ +|| T Consensus 275 pP~d-miG 281 (281) T protein:vir:10 275 PPYD-FVG 281 (281) T ss_pred Cccc-ccC Confidence 4444 567 No 16 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=100.00 E-value=2.1e-117 Score=660.23 Aligned_cols=261 Identities=24% Similarity=0.415 Sum_probs=240.1 Q ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhccCeeeccCCC Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLGAPIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKTGVFDLRGSN 80 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLGAPVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~g~~~~~~~~ 80 (309) ||+|+|+||+|||||||||||||||||||||+|||||||||||+|+||||||++|+|++|++|+++.+ T Consensus 1 Ms~~~~~s~~eLkdyiLRrLGaPii~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~~------------ 68 (268) T protein:vir:10 1 MSATRPASKTELKNYALRRLGYPAIDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIKT------------ 68 (268) T ss_pred CCCCCCCCHHHHHHHHHHhcCCceEEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHhh------------ Confidence 99999999999999999999999999999999999999999999999999999999999999977642 Q ss_pred ceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHHHHHhCcccc Q lcl|NC_012635. 81 VFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMMQDMLSPIPD 160 (309) Q Consensus 81 v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~~~~l~~~p~ 160 (309) .|+.++++|+++|+|++|||. ++|+++|+ +++|++++||+++++++|+|.|+ T Consensus 69 -----------~g~~~t~~g~~~~~~~~~fi~----------------~pp~v~gv-~~vf~~~~~~~~~~~n~~~~~~q 120 (268) T protein:vir:10 69 -----------AAQSTTQQGSTNWYENNNYVS----------------LPPGVLGV-NHVYTNIGASSVVPGNIFNIKYQ 120 (268) T ss_pred -----------hhhhcccCcccccccccccee----------------cCCceeeh-hhhhhcccccccccccccccchh Confidence 467788999999999999993 68999999 59999999999999999999999 Q ss_pred eeeccccCeE--EEeeccccceeEEEeeeh-hhhcchhhhhccccccccccCCcccchhhhhc---cccchhccceeccC Q lcl|NC_012635. 161 FWFNSANEQL--KVMGNFQKYDLIIVESWT-KSYIDTNKMVGNTVGYGTVGPQDSWSLSERYN---NPDHNLVGRVVGQD 234 (309) Q Consensus 161 ~~fN~~~~~L--~i~gn~~~~d~i~~E~~~-k~~~d~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~l~~~~~~~~ 234 (309) +|+|+.++++ ++.++|+.+|.|..++|+ +++.++. ++++.++++++++..|. ..+.++++|+++.| T Consensus 121 ~~lnd~~~~~~g~il~y~~~~~~l~~~~~~~~s~~~~~--------~~~~~~~~rly~d~d~~~~~~~~~~~i~~~~~~d 192 (268) T protein:vir:10 121 IFLNDIYAMTHGQILHYFMTSQYLETLDWVTNSQANRR--------VKFNEHQARLYLDFDWDTLQAGDFIMVDLTMRQD 192 (268) T ss_pred hhhcchhhhhHHhhhhhhhccceeehhhhhhcccCccc--------eEEEeeeceeEEeeccCCcccchhhhhHhhcccC Confidence 9999999999 999999999999988774 6565554 56666777777776554 35778999999999 Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeecHHHHHHHHHHHHHHHHHHHHh-ccCCCceeeC Q lcl|NC_012635. 235 PDVKQGAYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTIDGQRLIEEARLEKEALREELYL-LDPPFGIFVG 309 (309) Q Consensus 235 p~~~~~~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTlnG~~i~~eA~~Eie~L~eeL~~-~~pPl~~i~G 309 (309) |+++|++|||||||||||||+|+||||||+|||||||||||||||+|||+||++|||+|||||++ +++|..++|| T Consensus 193 P~~~~~~YNn~WvKdYatAL~K~~wGq~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~L~eel~~~~~~Pp~~liG 268 (268) T protein:vir:10 193 PDEYTGMYNDAWLKDYVEALFQQQWGRNLSKYDGIQMLGGVTLNGRQILEDASQFKKDLEENIRKEYELPPMDLIG 268 (268) T ss_pred CchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcCCCcceecC Confidence 99999999999999999999999999999999999999999999999999999999999999976 8888899999 No 17 >protein:vir:103004 Length: 268 # NCBI annotation: gp109 # Family: family:all:1103 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717776;genbank:gi:113200738;genbank:GeneID:4239008 Probab=96.08 E-value=3.3e-05 Score=45.14 Aligned_cols=216 Identities=19% Similarity=0.273 Sum_probs=102.9 Q ss_pred CCCC-CCCCHHHHHHHHHHhcC--------CceEEEEecHHHHHHHHHHHHHHHHHhhcccccceEEEEEecchhhhhcc Q lcl|NC_012635. 1 MSGY-NSQNPKELKDVILRRLG--------APIINVELTPDQIYDCIQRALELYGEYHFDGLNKGFHVFYVGDDEEKYKT 71 (309) Q Consensus 1 Ms~~-~~~sr~eLKdyilrrLG--------APVl~IeVtd~QI~d~Id~Alqlf~EyHydG~~k~yl~~~~~~~d~~~~~ 71 (309) --.+ ...--.+++|-+|..-| .--+.+.||++++..- +. -..+|. ..-..++ T Consensus 25 i~InVtd~Qi~DcId~Alelf~EyHydG~~k~y~~~~it~~~~~~g-----~~---~t~~g~-----------~~~~~~~ 85 (268) T protein:vir:10 25 IDINVCDEQLDDLVEEAIDYFQEYHYNGSYQSMMKIEVTDAIKTAA-----QS---TTQQGS-----------TNWYENN 85 (268) T ss_pred EEEecCHHHHHHHHHHHHHHhhhhhccchhcceEEEEechHHhhhh-----hh---cccCcc-----------ccccccc Confidence 1111 11111233333333222 3456889999997311 00 001111 1111122 Q ss_pred CeeeccCCCceeEEEEEeeccceeeecCCcccccccCCcceeeeeeccccceeeeeeeccchhhhhHHHHHHHHHHHHHH Q lcl|NC_012635. 72 GVFDLRGSNVFAVTRILRTNIGSITSMDGNATYPWFTDFLLGMAGINGGMGTSCNRFYGPNAFGADLGYFTQLTSYMGMM 151 (309) Q Consensus 72 g~~~~~~~~v~avt~i~r~~~g~~~~~~g~aty~~~~d~vlg~s~~~g~~~~s~~~~~~~n~fg~~l~y~~~l~~y~~~~ 151 (309) .++.+ |++|+.|+++. +++++..++.|+.-.+|...|+..+++++ +|.-|+|| +..+|.+.+ T Consensus 86 ~fi~~-pp~v~gv~~vf-~~~~~~~~~~~n~~~~~~q~~lnd~~~~~---------------~g~il~y~-~~~~~l~~~ 147 (268) T protein:vir:10 86 NYVSL-PPGVLGVNHVY-TNIGASSVVPGNIFNIKYQIFLNDIYAMT---------------HGQILHYF-MTSQYLETL 147 (268) T ss_pred cceec-CCceeehhhhh-hcccccccccccccccchhhhhcchhhhh---------------HHhhhhhh-hccceeehh Confidence 23322 66666666665 44555555566666666555655555432 23445565 666777777 Q ss_pred HHHhC--cccceeeccccCeEEEeeccc---cceeEEEeeehhhhcchhhhhccccccccccCCccc-------chhhhh Q lcl|NC_012635. 152 QDMLS--PIPDFWFNSANEQLKVMGNFQ---KYDLIIVESWTKSYIDTNKMVGNTVGYGTVGPQDSW-------SLSERY 219 (309) Q Consensus 152 ~~~l~--~~p~~~fN~~~~~L~i~gn~~---~~d~i~~E~~~k~~~d~~~~~~~~~~~~~~~~~d~~-------~~~~~~ 219 (309) ..+++ +...+.||.+.++|.+.++.+ .+|.+++|+... +|-+.. +.-|. |+| .+++.| T Consensus 148 ~~~~~s~~~~~~~~~~~~~rly~d~d~~~~~~~~~~~i~~~~~--~dP~~~---~~~YN-----n~WvKdYatAL~K~~w 217 (268) T protein:vir:10 148 DWVTNSQANRRVKFNEHQARLYLDFDWDTLQAGDFIMVDLTMR--QDPDEY---TGMYN-----DAWLKDYVEALFQQQW 217 (268) T ss_pred hhhhcccCccceEEEeeeceeEEeeccCCcccchhhhhHhhcc--cCCchh---hhhhh-----hhHHHHHHHHHHHHHH Confidence 65555 446788888888888877543 334444443222 111110 00011 333 112222 Q ss_pred ccccchhccceeccCCCcccc-------cccchHHHHHHHHHHHHHHHHHHHHhcCCcCCCceeec Q lcl|NC_012635. 220 NNPDHNLVGRVVGQDPDVKQG-------AYNNRWVKDYATALAKELNGQILARHQGMMLPGGVTID 278 (309) Q Consensus 220 ~~~~~~l~~~~~~~~p~~~~~-------~YN~~WvKdyAtAL~K~~wGqnL~K~qg~qLPGGvTln 278 (309) . +....+|+ .=|.+=+-+=|.+.+++.-=+-+.++. +|-|+-+- T Consensus 218 G------------q~L~K~qG~qLPGGvTlnG~~i~eeA~~E~e~L~eel~~~~~---~Pp~~liG 268 (268) T protein:vir:10 218 G------------RNLSKYDGIQMLGGVTLNGRQILEDASQFKKDLEENIRKEYE---LPPMDLIG 268 (268) T ss_pred H------------HHHHHhcCccCCCceeeCHHHHHHHHHHHHHHHHHHHHhhcC---CCcceecC Confidence 1 11112222 245566667777777777666666665 45554444 No 18 >protein:vir:1780 Length: 67 # NCBI annotation: tail protein B # Family: family:all:824 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570346;genbank:gi:18640505;genbank:GeneID:932718 Probab=27.41 E-value=0.89 Score=20.87 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=43.6 Q ss_pred CCCCCCCCHHHHHHHHHHhcC-CceEEEEecHHHHH---HHHHHHHHHH--HHhhcccccceEEEEEecch Q lcl|NC_012635. 1 MSGYNSQNPKELKDVILRRLG-APIINVELTPDQIY---DCIQRALELY--GEYHFDGLNKGFHVFYVGDD 65 (309) Q Consensus 1 Ms~~~~~sr~eLKdyilrrLG-APVl~IeVtd~QI~---d~Id~Alqlf--~EyHydG~~k~yl~~~~~~~ 65 (309) |.--...+.-+-.+.|||..| +||..++.+.-.+. ...+++-... .-|||| +++ .+++++| T Consensus 1 ~~~~~~~teLdAVN~~L~aIGesPV~sld~~npdva~a~~iL~~v~~~vqseGW~FN-te~---~~~ltPd 67 (67) T protein:vir:17 1 MAPIKRTSELDALNVKMTNIGQQPIVNINNTNPQVALAKTVLNQVTSDVLTEGWIFN-REL---DYPLTPQ 67 (67) T ss_pred CCCccccchhhHHHHHHHhhCccccccccCCCccHHHHHHHHHHHHHHHhhCCceee-ccC---ceeecCC Confidence 887889999999999999999 68999987755443 3333333333 347888 444 6777765 Done!