Query lcl|NC_011811.1_cdsid_YP_002456076.1 [gene=Ea21-4_gp53] [protein=hypothetical protein] [protein_id=YP_002456076.1] [location=33407..33874] Match_columns 155 No_of_seqs 4 out of 7 Neff 1.9 Searched_HMMs 1612 Date Thu Nov 7 14:14:00 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_53 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_53_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:95259 Length: 149 100.0 2.2E-87 1.4E-90 495.7 12.6 147 1-153 2-149 (149) 2 protein:vir:94602 Length: 1012 2.5 5.1 0.0031 16.7 -1.7 148 1-155 500-676 (1012) 3 protein:vir:100851 Length: 514 1.3 46 0.028 11.5 1.3 69 72-155 1-71 (514) 4 protein:vir:102338 Length: 116 1.1 51 0.032 11.2 1.1 85 44-155 1-90 (116) 5 protein:vir:4999 Length: 116 # 1.1 55 0.034 11.0 1.2 40 107-155 1-40 (116) 6 protein:vir:102727 Length: 945 1.0 65 0.04 10.6 6.3 150 1-155 486-680 (945) 7 protein:vir:4832 Length: 116 # 0.9 68 0.042 10.5 1.4 40 107-155 1-40 (116) 8 protein:vir:80177 Length: 1027 0.9 22 0.013 13.3 -1.8 148 1-155 473-651 (1027) 9 protein:vir:1845 Length: 392 # 0.9 54 0.034 11.0 0.4 52 1-87 304-392 (392) 10 protein:vir:93858 Length: 400 0.8 59 0.037 10.8 0.3 57 1-75 339-400 (400) No 1 >protein:vir:95259 Length: 149 # NCBI annotation: Phage hypothetical protein # Family: family:all:31734 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944892;genbank:gi:38707832;genbank:GeneID:2744045 Probab=100.00 E-value=2.2e-87 Score=495.69 Aligned_cols=147 Identities=57% Similarity=1.017 Sum_probs=138.7 Q ss_pred CcCCCCCcChhhhhhhhhcccCCccccccccceeeEeeccCCchhHHHHHHHHHHHHHHHhhhhhcccceEEeccHHHHH Q lcl|NC_011811. 1 MYTGNPSTNPLDRIRILCTDTDNDDLMIDDSVLEFFYVSNDKNERRAAIQALRYILMQFAKMADEKVGGVYERNSDRFAN 80 (155) Q Consensus 1 ~YTGdPanNplDrlRil~~D~~nd~~mi~d~~~q~f~~~~~~nerrAai~~lr~iLfqlar~~~Er~G~i~v~~sd~f~~ 80 (155) -|||||||||||||||||||||||++||+||+|||||++|+|||||||||+|||||||||||+||||||||||||||||+ T Consensus 2 ~YTGdPanNplDrlRil~~D~~~d~~li~ds~~q~f~~~~~~nerrAal~~lr~iLfqlar~~~Er~G~i~~~~sd~fka 81 (149) T protein:vir:95 2 CYTGDPANNPLDRVRILCTDTNNDEILIEQSVLEWFYLESGKDEKKAAIKALKYLLFQVAKMGDEKVGGVYLRNSSRFKS 81 (149) T ss_pred CcCCCCCcChhhhhhhhhccCCCcchhccccceeeeeeccCCchhHHHHHHHHHHHHHHHhhhhhccCceEEeccHHHHH Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHhCCccccccccccchhhHHHhcCCccccceeeEechhhhh-cccccccccccCCCCeEEEEEeec Q lcl|NC_011811. 81 FKSALDDLVKNGIVGTPYAGGISKCDIELRKCNPDSVNKSVEYGDAFSY-GDNRCDDRFFNGSPNRMVIAFVDK 153 (155) Q Consensus 81 ~k~~l~divKd~vi~lPYaGGIsk~Dm~m~~~nPdnV~r~~~~G~A~ry-g~~~c~~~~~~~~~~~~~~~~~~~ 153 (155) ||++||||+|+.++|||||||||||||+||+||||||+|++|||||||| |+++||.- |-..|.--|. T Consensus 82 ~k~~l~Dl~k~~v~~~PYaGGIs~~Dm~m~~~nPdnV~r~~~~G~a~~~~~~~~cn~~------~~~~~~~~~~ 149 (149) T protein:vir:95 82 LKAVYDDLVKSSVSGLPYAGGINQCDIDMRRQNPCSVKKYTEYGDAARYEGRDYCNRV------NGVFIIERDE 149 (149) T ss_pred HHHHHHhhhhhhhhccccccccchhhHHHhcCCccccceeEEecccccchhhhhhccc------cceEEEeeCC Confidence 9999999999999999999999999999999999999999999999999 99999852 3333333333 No 2 >protein:vir:94602 Length: 1012 # NCBI annotation: PfWMP4_35 # Family: family:all:12083 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762665;genbank:gi:115304373;genbank:GeneID:5142302 Probab=2.54 E-value=5.1 Score=16.72 Aligned_cols=148 Identities=25% Similarity=0.276 Sum_probs=88.3 Q ss_pred CcCCCCCcChhhhhhhhhcccCCccccccccceeeEe----------------eccCCchhHHHHHHHHHHHHHHHhhhh Q lcl|NC_011811. 1 MYTGNPSTNPLDRIRILCTDTDNDDLMIDDSVLEFFY----------------VSNDKNERRAAIQALRYILMQFAKMAD 64 (155) Q Consensus 1 ~YTGdPanNplDrlRil~~D~~nd~~mi~d~~~q~f~----------------~~~~~nerrAai~~lr~iLfqlar~~~ 64 (155) +.-|+|+|.|-.-|=--.||+- .--+-||||- +.+++.||--|+---..-||-|++-.- T Consensus 500 LiL~~~s~~~~~~~~S~~GD~~-----~~G~~Y~F~QiTD~L~G~~tDPF~L~VtSe~~e~iT~~~~WQ~~LFV~T~~~T 574 (1012) T protein:vir:94 500 LILVNPSTATDQLLISEIGDAT-----VPGEFYQFMQITDMLQGVTTDPFTLNVTSEGRERITAVTGWQKRLFVFTGSNT 574 (1012) T ss_pred eEEeccCCCcceEEEeecCCcc-----cCceeeeeeeeehhhccCcCCceeEEEcccccceeeeeeeeceeEEEEeccce Confidence 5678888887432222345543 2345566653 467899999988888888898887654 Q ss_pred hcc-cceEEeccHHHHHHHHHHHHHHhCCcc----ccccccccchhhHHHhcCCccc---cceeeEech-----hhhhcc Q lcl|NC_011811. 65 EKV-GGVYERNSDRFANFKSALDDLVKNGIV----GTPYAGGISKCDIELRKCNPDS---VNKSVEYGD-----AFSYGD 131 (155) Q Consensus 65 Er~-G~i~v~~sd~f~~~k~~l~divKd~vi----~lPYaGGIsk~Dm~m~~~nPdn---V~r~~~~G~-----A~ryg~ 131 (155) =+. ||=..--++||-||-+.|-..-.+.|+ ++=|.--.---| +|++-|-|+ ..|++.|-- |-+-|+ T Consensus 575 ~~~~GGe~~~~s~~~VN~vSt~G~~N~~~VV~T~~~V~Ym~~~G~F~-L~~k~~~~~Y~A~ErSvKIR~~F~~~~~ss~~ 653 (1012) T protein:vir:94 575 YSIEGGEQFGESSYAVNLVSTYGAFNQNCVVVTNLTVLYMNKFGLFD-LMNKPNTDSYGAFERSVKIRGLFQNLAGSSGD 653 (1012) T ss_pred EeeccccccchhHHHHHhHHhhcccCcceEEEeeeEEEEeeccceee-ccCCccCCcchhhhhhhhhhhhhhhhcccccc Confidence 333 333466688999999999877666655 555542221122 466666665 334444422 222244 Q ss_pred cccccccccCCCCeEEEEEeecCC Q lcl|NC_011811. 132 NRCDDRFFNGSPNRMVIAFVDKES 155 (155) Q Consensus 132 ~~c~~~~~~~~~~~~~~~~~~~~~ 155 (155) +--=-| ||-|.|..-|+.--... T Consensus 654 ~~~Wl~-~~e~~~~LYi~L~~~~d 676 (1012) T protein:vir:94 654 NLHWLR-YNESSNKLYIGLAAEGD 676 (1012) T ss_pred ceeeee-eccCCceEEEEecCCCc Confidence 333222 67788888887653222 No 3 >protein:vir:100851 Length: 514 # NCBI annotation: hypothetical protein # Family: family:all:2450 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164744;genbank:gi:56693157;genbank:GeneID:3197484 Probab=1.31 E-value=46 Score=11.45 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=36.5 Q ss_pred EeccHHHHHHHHHHHHHHhCCcccccc--ccccchhhHHHhcCCccccceeeEechhhhhcccccccccccCCCCeEEEE Q lcl|NC_011811. 72 ERNSDRFANFKSALDDLVKNGIVGTPY--AGGISKCDIELRKCNPDSVNKSVEYGDAFSYGDNRCDDRFFNGSPNRMVIA 149 (155) Q Consensus 72 v~~sd~f~~~k~~l~divKd~vi~lPY--aGGIsk~Dm~m~~~nPdnV~r~~~~G~A~ryg~~~c~~~~~~~~~~~~~~~ 149 (155) .|-.| --.||.|.+..|--- |=-.+|.| .++.++|+||+|+. +-..||-+- +.-.+|.+.|+- T Consensus 1 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~a---~t~gy~~~~--~~~t~gaAlR~E-- 65 (514) T protein:vir:10 1 MYTQD-------KTKDIMKKSFFGGDRAVAFDTNKED-ILNENLPENVKKSA---FTAGHSITP--DTQTDGAANRIE-- 65 (514) T ss_pred CCccc-------hhhHHHhhhhcccceeeeecCcHHH-HHHHhcchhhhhhh---hccccccCC--ccccCccchhhh-- Confidence 22222 124666665432111 11235555 46889999999985 455676654 346788877752 Q ss_pred EeecCC Q lcl|NC_011811. 150 FVDKES 155 (155) Q Consensus 150 ~~~~~~ 155 (155) .+|++- T Consensus 66 sLd~~l 71 (514) T protein:vir:10 66 SLNRDL 71 (514) T ss_pred hhccce Confidence 122221 No 4 >protein:vir:102338 Length: 116 # NCBI annotation: hypothetical protein # Family: family:all:26573 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529563;genbank:gi:90592648;genbank:GeneID:3974470 Probab=1.12 E-value=51 Score=11.17 Aligned_cols=85 Identities=19% Similarity=0.088 Sum_probs=51.7 Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccc--ce---EEeccHHHHHHHHHHHHHHhCCccccccccccchhhHHHhcCCccccc Q lcl|NC_011811. 44 ERRAAIQALRYILMQFAKMADEKVG--GV---YERNSDRFANFKSALDDLVKNGIVGTPYAGGISKCDIELRKCNPDSVN 118 (155) Q Consensus 44 errAai~~lr~iLfqlar~~~Er~G--~i---~v~~sd~f~~~k~~l~divKd~vi~lPYaGGIsk~Dm~m~~~nPdnV~ 118 (155) -.++.=++++.+..++-+.+-+||= .. -+|.| | + +|=+.++.-. -.|+-+-+ T Consensus 1 l~~~~~~~~~~~a~~l~~~vk~rTPv~~~d~G~LR~s-W-~-------------------~g~v~k~~~~--v~N~~eYA 57 (116) T protein:vir:10 1 MSKNLRRAKNNIGNKLLRKVKPKTPVAKIDGGTARKS-W-K-------------------YKELNLFDGV--VSNNVEYI 57 (116) T ss_pred CchHHHHHHHHHHHHHHHHHHhhCCCCcCCCcccccC-c-e-------------------eeeeeccCce--eecCCccc Confidence 4555567788888888888888882 10 01111 1 0 1112222211 25888899 Q ss_pred eeeEechhhhhcccccccccccCCCCeEEEEEeecCC Q lcl|NC_011811. 119 KSVEYGDAFSYGDNRCDDRFFNGSPNRMVIAFVDKES 155 (155) Q Consensus 119 r~~~~G~A~ryg~~~c~~~~~~~~~~~~~~~~~~~~~ 155 (155) .++|||.--+=|+ -.+-.+.+.|.++.||.-.- T Consensus 58 ~~VE~GHRq~~g~----g~~~~~~gkrlk~~~V~G~f 90 (116) T protein:vir:10 58 HHLEYGHRTRQGT----GTSENYRPKPNGISFVPGVF 90 (116) T ss_pred ccccCCceeeCCc----ceecccccccccCCccCcee Confidence 9999998766553 23455577888888987654 No 5 >protein:vir:4999 Length: 116 # NCBI annotation: putative head-tail joining protein # Family: family:all:1030 # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049973;genbank:gi:9632945;genbank:GeneID:1262108 Probab=1.11 E-value=55 Score=11.02 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=23.3 Q ss_pred HHHhcCCccccceeeEechhhhhcccccccccccCCCCeEEEEEeecCC Q lcl|NC_011811. 107 IELRKCNPDSVNKSVEYGDAFSYGDNRCDDRFFNGSPNRMVIAFVDKES 155 (155) Q Consensus 107 m~m~~~nPdnV~r~~~~G~A~ryg~~~c~~~~~~~~~~~~~~~~~~~~~ 155 (155) |.|++.+|-..++.+++|-.-.=-.. ..|.+. =.|+..-+ T Consensus 1 M~~~k~~p~~ln~ri~Fg~~~~~~n~------~tG~~~---~~f~~~ft 40 (116) T protein:vir:49 1 MRKVKYLPSDFPYKADFGTYQSTPNK------FTGVSV---PKFVKQFT 40 (116) T ss_pred CcccccccccCcEeEEeeeeeeeecC------CCCccc---ceeeeeEE Confidence 99999999999999999974332110 112221 12222222 No 6 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=0.99 E-value=65 Score=10.61 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=73.2 Q ss_pred CcCCCCCcC--hhhhhh---------hhhcccCCccccccccceeeEeeccCCchhHHHHHHHHHHHHHHHhhhhhcc-c Q lcl|NC_011811. 1 MYTGNPSTN--PLDRIR---------ILCTDTDNDDLMIDDSVLEFFYVSNDKNERRAAIQALRYILMQFAKMADEKV-G 68 (155) Q Consensus 1 ~YTGdPanN--plDrlR---------il~~D~~nd~~mi~d~~~q~f~~~~~~nerrAai~~lr~iLfqlar~~~Er~-G 68 (155) .+. |.+| |.|..- ..--..-+.+..-.++.=+. +....+.|-++++.++.++=++..-+-|+. + T Consensus 486 lli--~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~dEn--s~~psE~kda~~e~~~~l~~~~~~~a~e~i~~ 561 (945) T protein:vir:10 486 PFS--GLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDEN--SSVPSEQKNAGLEVLRNLFKSLDANASENLKQ 561 (945) T ss_pred eee--ccccccccccccccccCCCCcccccCCCCCCCCCCCCCCCC--CCCCCcccchHHHHHHHHHHHHHHHHHHHHHH Confidence 111 0011 111100 00000011111121111110 122346788999999999999998885654 5 Q ss_pred ceEEeccHHHHHHHHHHHHHHhCC----cc-----ccccccccchhhHHHhcCCccccceeeEech----hhhh-ccccc Q lcl|NC_011811. 69 GVYERNSDRFANFKSALDDLVKNG----IV-----GTPYAGGISKCDIELRKCNPDSVNKSVEYGD----AFSY-GDNRC 134 (155) Q Consensus 69 ~i~v~~sd~f~~~k~~l~divKd~----vi-----~lPYaGGIsk~Dm~m~~~nPdnV~r~~~~G~----A~ry-g~~~c 134 (155) =||+.|-|..-.-+++|-++||.- || .------+|++||.--+.|.- |..++-|.- .-|. |.+.- T Consensus 562 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 640 (945) T protein:vir:10 562 VIELTNDDNYLKEKELLTRVLKSVGLDSVSEFIENNSQTDVEVSAKDILSFKYNSL-VEDETIYATEKDIVLRLLGKNSL 640 (945) T ss_pred HHhhcCCCchhHHHHHHHHHHHHhhhHHHHHHHhcCCccceeechhhhhhhhhhhh-ccccceeecchhhhhhhhccccc Confidence 679999999999999999999964 22 001112356667665555431 222222211 1122 44433 Q ss_pred cc-------------------ccccCCCCeEEEEEeecCC Q lcl|NC_011811. 135 DD-------------------RFFNGSPNRMVIAFVDKES 155 (155) Q Consensus 135 ~~-------------------~~~~~~~~~~~~~~~~~~~ 155 (155) +. .|+.....|.|.|-+.--| T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (945) T protein:vir:10 641 DHRETFGLIATHFDCHTVPKVEFYSDKDKRYVFANLSVCS 680 (945) T ss_pred chhhhhhhhhcccccccccceeeeccccceeEEecccccc Confidence 33 3555555566655443333 No 7 >protein:vir:4832 Length: 116 # NCBI annotation: ORF28 # Family: family:all:1030 # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038329;genbank:gi:9634655;genbank:GeneID:1262597 Probab=0.94 E-value=68 Score=10.48 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=23.0 Q ss_pred HHHhcCCccccceeeEechhhhhcccccccccccCCCCeEEEEEeecCC Q lcl|NC_011811. 107 IELRKCNPDSVNKSVEYGDAFSYGDNRCDDRFFNGSPNRMVIAFVDKES 155 (155) Q Consensus 107 m~m~~~nPdnV~r~~~~G~A~ryg~~~c~~~~~~~~~~~~~~~~~~~~~ 155 (155) |++++.+|-..++.+++|-.-.=-.. ..|.+.. .|+..-+ T Consensus 1 M~~~k~~p~~~n~ri~FG~~~~~~n~------~tG~~~~---~f~~~ft 40 (116) T protein:vir:48 1 MARVRYLPSDFRFKADFGTYQSSPNK------FTGVSVP---KFVKQFT 40 (116) T ss_pred CeeeeeehhhccEEEEeceeeeeeCC------CCCcccc---eeeeeEE Confidence 99999999999999999974432111 1122211 1222111 No 8 >protein:vir:80177 Length: 1027 # NCBI annotation: tail tubular protein B # Family: family:all:12083 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285795;genbank:gi:148747829;genbank:GeneID:5220453 Probab=0.89 E-value=22 Score=13.25 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=87.0 Q ss_pred CcCCCCCcChhhhhhhhhcccCCccccccccceeeE-----------------eeccCCchhHHHHHHHHHHHHHHHhhh Q lcl|NC_011811. 1 MYTGNPSTNPLDRIRILCTDTDNDDLMIDDSVLEFF-----------------YVSNDKNERRAAIQALRYILMQFAKMA 63 (155) Q Consensus 1 ~YTGdPanNplDrlRil~~D~~nd~~mi~d~~~q~f-----------------~~~~~~nerrAai~~lr~iLfqlar~~ 63 (155) +.-|+|+|.|-.-|=--.||+- .--+-|||| ..+++++||--++---..-||-|++-. T Consensus 473 LvL~~~t~~~~~~~~S~~GD~~-----~~G~~Y~F~QvTD~L~G~~sDPF~L~VsSsq~~d~vT~~~~WQ~~LFV~T~~~ 547 (1027) T protein:vir:80 473 LVLGGFTNDPTRVVFSATGDTV-----EGGVKYNFFQVTDDLDGLDSDPFDLVVSSSQADDYVTGLVEWQSSLFVLTRRA 547 (1027) T ss_pred eEEeccCCCcceEEEeecCCcc-----cCceeeeeeeeehhhccCcCCceeEEEecccccceeeeeeeeceeEEEEecce Confidence 5678888888433333345543 123445554 345689999999888888899888765 Q ss_pred hhc--ccceEEeccHHHHHHHHHHHHHHhCCcc----ccccccccchhhHHHhcCCccc---cceeeEech-----hhhh Q lcl|NC_011811. 64 DEK--VGGVYERNSDRFANFKSALDDLVKNGIV----GTPYAGGISKCDIELRKCNPDS---VNKSVEYGD-----AFSY 129 (155) Q Consensus 64 ~Er--~G~i~v~~sd~f~~~k~~l~divKd~vi----~lPYaGGIsk~Dm~m~~~nPdn---V~r~~~~G~-----A~ry 129 (155) -=+ -|+-..--+.||-||-+.|-..-...|+ ++=|.--.---| +|++-|-++ ..|++.|-- |-.- T Consensus 548 T~~~~GGd~t~~~a~~~VN~iSs~G~~N~~~VV~T~~~V~Yl~~~G~F~-L~~r~~~~~Y~A~EkSiKIR~~F~~~~~ta 626 (1027) T protein:vir:80 548 TFRANGGDATISPARRFVNYISSLGLVNPFSVVRTDTAVFYLSDSGVFN-LTPRVEDGEYQAIEKSIKIRKVFGKTTSTA 626 (1027) T ss_pred eEEeecCccccchhHHHHHHHHhhcccCcceEEEeeeEEEEeeccceee-ccCCccCCcchhhhhhhhhhhhhhhhcccc Confidence 433 3555567789999999999876655554 555542211112 356666554 334444422 2222 Q ss_pred cccccccccccCCCCeEEEEEeecCC Q lcl|NC_011811. 130 GDNRCDDRFFNGSPNRMVIAFVDKES 155 (155) Q Consensus 130 g~~~c~~~~~~~~~~~~~~~~~~~~~ 155 (155) |++--=-| ||-+.|.+-|+.--... T Consensus 627 ~~~~~Wm~-~~q~~~~LYv~L~~~~e 651 (1027) T protein:vir:80 627 VSSAAWMS-FDQNRKVLYVALPRGSE 651 (1027) T ss_pred ccceeeee-eccCCceEEEEecCCCc Confidence 33322222 57777888777643222 No 9 >protein:vir:1845 Length: 392 # NCBI annotation: tail sheath protein FI # Family: family:all:115 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052269;genbank:gi:9634076;genbank:GeneID:1262448 Probab=0.88 E-value=54 Score=11.05 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=17.7 Q ss_pred CcCC-----------------------------------CCCcChhhhhhh--hhcccCCccccccccceeeEeeccCCc Q lcl|NC_011811. 1 MYTG-----------------------------------NPSTNPLDRIRI--LCTDTDNDDLMIDDSVLEFFYVSNDKN 43 (155) Q Consensus 1 ~YTG-----------------------------------dPanNplDrlRi--l~~D~~nd~~mi~d~~~q~f~~~~~~n 43 (155) .|.| |+.+||.+.+.. |.-++. +-.-.-.||.... T Consensus 304 ~~v~e~n~~~~~~~i~~~i~~~L~~l~~~gal~g~~v~~d~~~nt~~~i~~G~~~~~v~----~~p~~p~e~I~~~---- 375 (392) T protein:vir:18 304 WAVDKPITASLIRDIVDGINAKFRELKSNGYIVDGECWFDEESNDKETLKAGKLYIDYD----YTPVPPLESLTLR---- 375 (392) T ss_pred HhccCCCCHHHHHHHHHHHHHHHHHHHhcCcccceEEEEecCCCCHHHhhCCeEEEEEE----EEecCCcceEEEE---- Confidence 3333 555555554421 211111 1111112222111 Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcccceEEeccHHHHHHHHHHHH Q lcl|NC_011811. 44 ERRAAIQALRYILMQFAKMADEKVGGVYERNSDRFANFKSALDD 87 (155) Q Consensus 44 errAai~~lr~iLfqlar~~~Er~G~i~v~~sd~f~~~k~~l~d 87 (155) -.+..+++.++.+.+.- T Consensus 376 ---------------------------~~~~~~~~~~~~~~~~~ 392 (392) T protein:vir:18 376 ---------------------------QRITDKYLVNLAESVNS 392 (392) T ss_pred ---------------------------EEEchHHHHHHHHHhcC Confidence 12444454444444433 No 10 >protein:vir:93858 Length: 400 # NCBI annotation: putative structural protein # Family: family:all:2417 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764266;genbank:gi:115315579;genbank:GeneID:5141552 Probab=0.79 E-value=59 Score=10.82 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=21.5 Q ss_pred CcCCCCCcChhhhhhhhhcccCCccccccccceee---EeeccCCchhHHHHHHHHHHHHH--HHhhhhhcccceEEecc Q lcl|NC_011811. 1 MYTGNPSTNPLDRIRILCTDTDNDDLMIDDSVLEF---FYVSNDKNERRAAIQALRYILMQ--FAKMADEKVGGVYERNS 75 (155) Q Consensus 1 ~YTGdPanNplDrlRil~~D~~nd~~mi~d~~~q~---f~~~~~~nerrAai~~lr~iLfq--lar~~~Er~G~i~v~~s 75 (155) .|||-|++||.=-+ |.--.|+++.|+= |--+.+-+ +||-. ++--++-+--++|+-=+ T Consensus 339 ~~Tr~~~~kp~V~V--------Dek~~i~~~~~~t~~sf~~~tNs~----------~ilvetlv~Gsi~~~N~~ay~~v~ 400 (400) T protein:vir:93 339 VYTGSKALKPTVLV--------DQKYHIDMQDLTKVDAFEWKTNSN----------MILVETLTSGHVETYNAGAVITVS 400 (400) T ss_pred eeccCCCCCceeee--------ehhhhccccCceeccceeeeeccc----------eEEeeeeeccceecccceeeEeeC Confidence 69999999996332 3444555554431 11111111 01100 00011111111222112 Done!