Query lcl|NC_011551.1_cdsid_YP_002308533.1 [gene=P27] [protein=DNA stabilization gp4] [protein_id=YP_002308533.1] [location=17044..17526] Match_columns 160 No_of_seqs 17 out of 22 Neff 3.7 Searched_HMMs 1612 Date Thu Nov 7 12:38:36 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_20 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_20_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:3528 Length: 160 # 100.0 2E-84 1.2E-87 479.4 16.1 160 1-160 1-160 (160) 2 protein:vir:105380 Length: 160 100.0 2.6E-80 1.6E-83 456.9 15.6 157 1-160 1-157 (160) 3 protein:vir:176 Length: 160 # 100.0 2.8E-80 1.8E-83 456.7 15.6 157 1-160 1-157 (160) 4 protein:vir:105524 Length: 166 100.0 4.4E-78 2.7E-81 444.7 15.8 159 1-160 1-160 (166) 5 protein:vir:100918 Length: 166 100.0 1.7E-75 1.1E-78 430.4 15.5 155 2-160 1-159 (166) 6 protein:vir:9267 Length: 166 # 100.0 2.5E-75 1.5E-78 429.6 15.6 155 2-160 1-159 (166) 7 protein:vir:2108 Length: 166 # 100.0 2.3E-74 1.4E-77 424.3 15.4 155 2-160 1-159 (166) 8 protein:vir:108311 Length: 249 99.8 2.8E-21 1.7E-24 133.3 11.9 140 1-151 1-249 (249) 9 protein:vir:103760 Length: 207 63.8 0.31 0.00019 23.4 11.8 148 4-158 1-207 (207) 10 protein:vir:7020 Length: 246 # 63.0 0.32 0.0002 23.3 10.7 152 1-155 19-246 (246) 11 protein:vir:103305 Length: 245 25.7 2 0.0013 18.9 11.6 147 1-149 13-245 (245) 12 protein:vir:100027 Length: 204 24.7 2.1 0.0013 18.8 11.1 141 1-156 1-204 (204) 13 protein:vir:105646 Length: 245 20.2 2.8 0.0017 18.1 10.9 149 1-154 19-245 (245) No 1 >protein:vir:3528 Length: 160 # NCBI annotation: P27 # Family: family:all:1693 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050988;genbank:gi:9633574;genbank:GeneID:1262321 Probab=100.00 E-value=2e-84 Score=479.45 Aligned_cols=160 Identities=99% Similarity=1.408 Sum_probs=159.7 Q ss_pred CCccchHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhhccCceeeccccccCCCCCCcccccCCCHHHHH Q lcl|NC_011551. 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTADDASGLPRKYKQ 80 (160) Q Consensus 1 ~~~~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW~a~gi~~Gy~Fa~~~e~~~p~Dd~glp~~a~~ 80 (160) |+|||||||||++||||+||||||||||||||||||||||||+||+||++|||++||+||+++|+|+|+|+||||++|++ T Consensus 1 m~~~~Tkgdiv~~Alrk~gvas~at~~DvePq~~e~gindLe~MMaeW~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~~ 80 (160) T protein:vir:35 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTSDDASGLPRKYKQ 80 (160) T ss_pred CCccchHHHHHHHHHHHhhccccccccCCCHHHHHHHHHHHHHHHHhhccCCceeeeeecccCCCCCcccccCCchhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCccccccceeeeeCCCCccccCCCCC Q lcl|NC_011551. 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNADPVS 160 (160) Q Consensus 81 AV~~nLA~riApdygie~~~~vi~~A~~ak~~Ll~a~~~~p~~~~~~~mP~G~gnr~~~~~~~~yy~~r~~~~~~~~~~~ 160 (160) ||+|||||||||+||+|+|++++++|+++|++||++++++|+++||++||+||||++|+|+|+|||++|.||.|+-+|+| T Consensus 81 aV~~~LAvria~dyG~~~s~~~~a~A~~ay~~Ll~a~~~~p~~~r~~~mP~GsGN~~~a~~g~ryy~~r~~~~~~~~p~~ 160 (160) T protein:vir:35 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNTDPVS 160 (160) T ss_pred HHHHHHHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHhhccccccccCCCCcccccccccCCcceeccCceeccCCCCcCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:105380 Length: 160 # NCBI annotation: gene 7 protein # Family: family:all:1693 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958183;genbank:gi:41057285;genbank:GeneID:2716627 Probab=100.00 E-value=2.6e-80 Score=456.93 Aligned_cols=157 Identities=59% Similarity=0.931 Sum_probs=154.9 Q ss_pred CCccchHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhhccCceeeccccccCCCCCCcccccCCCHHHHH Q lcl|NC_011551. 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTADDASGLPRKYKQ 80 (160) Q Consensus 1 ~~~~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW~a~gi~~Gy~Fa~~~e~~~p~Dd~glp~~a~~ 80 (160) |+|||||||||++|||||||+||||||||||||||||||+||+||+||+++||+|||+||+++|+|+|+|+||||++|++ T Consensus 1 ~~~~~Tkgdiv~~Alrklgvas~at~~Dvepqs~~~gindLe~MMaeW~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~~ 80 (160) T protein:vir:10 1 MATVLTKGEIVLFALRKFAIASNASLTDVEPQSIEDGVNDLEDMMSEWMINPGDIGYAFATGDEQPLPDDESGLPRKYKH 80 (160) T ss_pred CCCchhHHHHHHHHHHHhcccccccccCCChHHHHHHHHHHHHHHHHhccCCcceeeeecccCCCCCccccccCChhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCccccccceeeeeCCCCccccCCCCC Q lcl|NC_011551. 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNADPVS 160 (160) Q Consensus 81 AV~~nLA~riApdygie~~~~vi~~A~~ak~~Ll~a~~~~p~~~~~~~mP~G~gnr~~~~~~~~yy~~r~~~~~~~~~~~ 160 (160) ||+|||||||||+||||||++++++|+++|++||++++++|+++|+++||+|+|||+++|+++||||+| ..+.|.++ T Consensus 81 aV~~~LAvria~dygie~s~~~~s~A~~ay~~Ll~a~~~~p~~~~~~~mP~gsGn~~~~~~~~~yy~~~---~~~~d~~~ 157 (160) T protein:vir:10 81 AVGYQLLLRMLSDYSLEPTPQVLSNAQRSYDALMTDTLVVPSMRRRGDFPVGQGNKYDVFTSDRYYPGD---LPLIDGDI 157 (160) T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHhhcchhhccCCCCCCCCCcccccccccccCCC---ccccCCCC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 57788888 No 3 >protein:vir:176 Length: 160 # NCBI annotation: DNA stabilization protein # Family: family:all:1693 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112081;genbank:gi:13559871;genbank:GeneID:920968 Probab=100.00 E-value=2.8e-80 Score=456.68 Aligned_cols=157 Identities=59% Similarity=0.934 Sum_probs=154.9 Q ss_pred CCccchHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhhccCceeeccccccCCCCCCcccccCCCHHHHH Q lcl|NC_011551. 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTADDASGLPRKYKQ 80 (160) Q Consensus 1 ~~~~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW~a~gi~~Gy~Fa~~~e~~~p~Dd~glp~~a~~ 80 (160) |+|||||||||++|||||||+||||||||||||||||||+||+||+||+++||+|||+||+++|+|+|+|+||||++|++ T Consensus 1 ~~~~~Tkgdiv~~Alrklgvas~at~~Dvepqs~~~gindLe~MMaeW~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~~ 80 (160) T protein:vir:17 1 MATVLTKGEIVLFALRKFAIASNASLTDVEPQSIEDGVNDLEDMMSEWMINPGDIGYAFATGDEQPLPDDESGLPRKYKH 80 (160) T ss_pred CCCchhHHHHHHHHHHHhcccccccccCCChHHHHHHHHHHHHHHHHhccCCcceeeeecccCCCCCccccccCChhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCccccccceeeeeCCCCccccCCCCC Q lcl|NC_011551. 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNADPVS 160 (160) Q Consensus 81 AV~~nLA~riApdygie~~~~vi~~A~~ak~~Ll~a~~~~p~~~~~~~mP~G~gnr~~~~~~~~yy~~r~~~~~~~~~~~ 160 (160) ||+|||||||||+||||||++++++|+++|++||++++++|+.+|+++||+|+|||+++|+++||||+| ..+.|.++ T Consensus 81 aV~~~LAvria~dygie~s~~~~s~A~~ay~~Ll~a~~~~p~~~~~~~mP~gsgn~~~~~~~~~yy~~~---~~~~d~~~ 157 (160) T protein:vir:17 81 AVGYQLLLRMLSDYSLEPTPQVLSNAQRSYDALMTDTLVVPSIRRRGDFPVGQGNKYDVFTSDRYYPGD---LPLIDGDI 157 (160) T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHhhcchhhccCCCCCCCCCcccccccccccCCC---ccccCCCC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 57788888 No 4 >protein:vir:105524 Length: 166 # NCBI annotation: phage DNA stabilization protein # Family: family:all:1693 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516193;genbank:gi:89885996;genbank:GeneID:3964384 Probab=100.00 E-value=4.4e-78 Score=444.69 Aligned_cols=159 Identities=53% Similarity=0.874 Sum_probs=153.1 Q ss_pred CCccchHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhhccCceeeccccccCCCCCCcccccCCCHHHHH Q lcl|NC_011551. 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTADDASGLPRKYKQ 80 (160) Q Consensus 1 ~~~~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW~a~gi~~Gy~Fa~~~e~~~p~Dd~glp~~a~~ 80 (160) |+|||||||||++|||||||+|||||+||||||||+|||+||+||+||+++||++||+||+++|+|+|+|+||||++|++ T Consensus 1 ~~~~~TkgeiV~~Alrklgv~s~at~~Dvepq~~~~gv~dLe~MMaeW~a~gi~lGy~Fa~~~e~p~pdD~~glp~~~~~ 80 (166) T protein:vir:10 1 MPKLLTKGDVVLFALRKCAVASNATLTDVEPQSVTDGLDDLEAMMAEWRARGIDIGYRFAQDEQTVSPDDPTGVLPLFTS 80 (166) T ss_pred CCCcchHHHHHHHHHHHhccCcchhhcCCCHHHHHHHHHHHHHHHHHhccCcceeeeeecccCCCCCccccccCchhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCccccccceeeeeCCCCccccCCCC- Q lcl|NC_011551. 81 VMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNADPV- 159 (160) Q Consensus 81 AV~~nLA~riApdygie~~~~vi~~A~~ak~~Ll~a~~~~p~~~~~~~mP~G~gnr~~~~~~~~yy~~r~~~~~~~~~~- 159 (160) ||+|||||||||+||||||++++++|+++|++||++++++|+++|+++||+|||||+++|+++|||++|+ |..+-|-. T Consensus 81 aV~~~LAvria~dygi~~s~~~~s~A~~ay~~Ll~a~~~~p~~~r~~dmP~GsGN~~~~~~~~~yy~~~~-~~~dg~~~~ 159 (166) T protein:vir:10 81 AVGYQLMLRVLADYGIAPTPRQEATAHTAYDALLTATLTVPSLKRRGDMPTGQGNQYDHFISGRYYPDKR-ENVNGDNAI 159 (166) T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccCcccccccccccccCCc-cccCccccc Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 44444432 Q ss_pred C Q lcl|NC_011551. 160 S 160 (160) Q Consensus 160 ~ 160 (160) | T Consensus 160 ~ 160 (166) T protein:vir:10 160 T 160 (166) T ss_pred C Confidence 2 No 5 >protein:vir:100918 Length: 166 # NCBI annotation: Gp4 # Family: family:all:1693 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006410;genbank:gi:46358702;genbank:GeneID:2777068 Probab=100.00 E-value=1.7e-75 Score=430.44 Aligned_cols=155 Identities=34% Similarity=0.478 Sum_probs=151.4 Q ss_pred CccchHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhh--ccCceeeccccccCCCCCCcccccCCCHHHH Q lcl|NC_011551. 2 TKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAEL--QITFGDLGYQFSAEEENPTADDASGLPRKYK 79 (160) Q Consensus 2 ~~~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW--~a~gi~~Gy~Fa~~~e~~~p~Dd~glp~~a~ 79 (160) -|||||||||++|||||||+||||||||||||+|||||+||+||+|| +++||++||+||+++|+|+|+|+||||++|+ T Consensus 1 ~~m~TkgdiVl~AlrklgVas~atltDvEpqs~~dgi~dLe~MMaeW~~~a~gI~lGY~fa~~~e~p~pdD~~glp~~a~ 80 (166) T protein:vir:10 1 MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIVTGYVFSDDDNPPSEGDDHGLRSSAI 80 (166) T ss_pred CccchHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHHHhhcCCCceecceecccCCCCCCccccCCCHhHH Confidence 79999999999999999999999999999999999999999999999 9999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhhccccc--cCCCCCCCCCccccccceeeeeCCCCccccCC Q lcl|NC_011551. 80 QVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIAR--RGDMPVGQGNNYTALGTASYYVERGFHAKNAD 157 (160) Q Consensus 80 ~AV~~nLA~riApdygie~~~~vi~~A~~ak~~Ll~a~~~~p~~~~--~~~mP~G~gnr~~~~~~~~yy~~r~~~~~~~~ 157 (160) +||+|||||||||+|||||+++++++|+|+|++||++++++|+.++ |||||+||||+++.|++||||++ ++++| T Consensus 81 ~av~~~LAvria~dygie~t~~v~s~A~~ay~aLl~~t~~a~~~~~~Y~~dmP~G~Gn~~~~~~~~~y~~~----~~~~~ 156 (166) T protein:vir:10 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPG----EQNAD 156 (166) T ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCcCCCccchhccccccccc----ccccC Confidence 9999999999999999999999999999999999999999999999 88999999999999999999999 45777 Q ss_pred CCC Q lcl|NC_011551. 158 PVS 160 (160) Q Consensus 158 ~~~ 160 (160) ++| T Consensus 157 ~~~ 159 (166) T protein:vir:10 157 STT 159 (166) T ss_pred CCC Confidence 777 No 6 >protein:vir:9267 Length: 166 # NCBI annotation: 4 # Family: family:all:1693 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720331;genbank:gi:24371589;genbank:GeneID:955812 Probab=100.00 E-value=2.5e-75 Score=429.62 Aligned_cols=155 Identities=33% Similarity=0.467 Sum_probs=150.8 Q ss_pred CccchHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhh--ccCceeeccccccCCCCCCcccccCCCHHHH Q lcl|NC_011551. 2 TKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAEL--QITFGDLGYQFSAEEENPTADDASGLPRKYK 79 (160) Q Consensus 2 ~~~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW--~a~gi~~Gy~Fa~~~e~~~p~Dd~glp~~a~ 79 (160) -|||||||||++|||||||+||||||||||||+|||||+||+||+|| +++||++||+||+++|+|+|+|+||||++|+ T Consensus 1 ~~m~Tkgdiv~~AlrklgVas~atltDvEpqs~~dgi~dLe~MMaeW~~~a~gI~lGY~fa~~~e~p~pdD~~glp~~a~ 80 (166) T protein:vir:92 1 MQIKTKGDLARAALRKLGVASDATLTDIEPQSMQDAVDDLEAMMAEWYQDGKGIITGYIFSDDDNPPAEGDDHGLRSSAV 80 (166) T ss_pred CccchHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHHHhhcCCCceeccccccccCCCCCccccCCCHhHH Confidence 79999999999999999999999999999999999999999999999 9999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhhccccc--cCCCCCCCCCccccccceeeeeCCCCccccCC Q lcl|NC_011551. 80 QVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIAR--RGDMPVGQGNNYTALGTASYYVERGFHAKNAD 157 (160) Q Consensus 80 ~AV~~nLA~riApdygie~~~~vi~~A~~ak~~Ll~a~~~~p~~~~--~~~mP~G~gnr~~~~~~~~yy~~r~~~~~~~~ 157 (160) +||+|||||||||+|||||+++++++|+|+|++||++++++|+.++ |||||+||||+++.|++||||++ ++++| T Consensus 81 ~av~~~LAvria~dygie~t~~v~s~A~~~y~aLl~~t~~a~~~r~~Y~~dmP~G~Gn~~~~~~~~~y~~~----~~~~~ 156 (166) T protein:vir:92 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPG----EQNAD 156 (166) T ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcCCCccchhccccccccc----cccCC Confidence 9999999999999999999999999999999999999999999999 88999999999999999999988 46677 Q ss_pred CCC Q lcl|NC_011551. 158 PVS 160 (160) Q Consensus 158 ~~~ 160 (160) ++| T Consensus 157 ~t~ 159 (166) T protein:vir:92 157 STT 159 (166) T ss_pred CCC Confidence 777 No 7 >protein:vir:2108 Length: 166 # NCBI annotation: head completion protein # Family: family:all:1693 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:NP_059632;genbank:gi:9635540;genbank:GeneID:1262828 Probab=100.00 E-value=2.3e-74 Score=424.26 Aligned_cols=155 Identities=35% Similarity=0.470 Sum_probs=149.6 Q ss_pred CccchHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhh--ccCceeeccccccCCCCCCcccccCCCHHHH Q lcl|NC_011551. 2 TKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAEL--QITFGDLGYQFSAEEENPTADDASGLPRKYK 79 (160) Q Consensus 2 ~~~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW--~a~gi~~Gy~Fa~~~e~~~p~Dd~glp~~a~ 79 (160) -|||||||||++|||||||+||||||||||||+|||||+||+||+|| +++||++||+||+++|+|+|+|+||||++|+ T Consensus 1 ~~m~TkgdiVl~AlrklgVas~atltDvEpqs~~dgi~dLe~MMaeW~~~a~gI~lGY~fa~~~e~p~pdD~~glp~~a~ 80 (166) T protein:vir:21 1 MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIITGYVFSDDENPPAEGDDHGLRSSAV 80 (166) T ss_pred CccchHHHHHHHHHHHhccccccccccCChHHHHHHHHHHHHHHHHHhhcCCCceecceecccCCCCCCccccCCCHhHH Confidence 79999999999999999999999999999999999999999999999 9999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhhccccc--cCCCCCCCCCccccccceeeeeCCCCccccCC Q lcl|NC_011551. 80 QVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIAR--RGDMPVGQGNNYTALGTASYYVERGFHAKNAD 157 (160) Q Consensus 80 ~AV~~nLA~riApdygie~~~~vi~~A~~ak~~Ll~a~~~~p~~~~--~~~mP~G~gnr~~~~~~~~yy~~r~~~~~~~~ 157 (160) +||+|||||||||+|||||+++|+++|+++|++|++++++++..++ |||||+||||+++.|++||||++|. ++| T Consensus 81 ~av~~~LAvria~dygie~t~~v~~~A~~aya~Lls~~~~a~~kR~~y~~dmP~G~Gn~~~~~~~~~y~~~~~----~~~ 156 (166) T protein:vir:21 81 SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAISRAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQ----NAD 156 (166) T ss_pred HHHHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCcCCCccchhccccccccccc----cCC Confidence 9999999999999999999999999999999999999998888877 7799999999999999999999974 566 Q ss_pred CCC Q lcl|NC_011551. 158 PVS 160 (160) Q Consensus 158 ~~~ 160 (160) ++| T Consensus 157 ~t~ 159 (166) T protein:vir:21 157 STT 159 (166) T ss_pred CCC Confidence 666 No 8 >protein:vir:108311 Length: 249 # NCBI annotation: hypothetical protein # Family: family:all:28027 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552279;genbank:gi:160700604;genbank:GeneID:5758827 Probab=99.76 E-value=2.8e-21 Score=133.29 Aligned_cols=140 Identities=19% Similarity=0.294 Sum_probs=107.8 Q ss_pred CCccchHHHHHHHHHHHhhc-ccccccCCCChHHHHHHHHHHHHHHHhhccCc--------------------------- Q lcl|NC_011551. 1 MTKPLTKGEIVLFALRKAGI-ASEATNIDVEPQSFEEGINDLEDLMAELQITF--------------------------- 52 (160) Q Consensus 1 ~~~~~Tkgdiv~~Alrk~gv-as~atl~Dvepqs~e~gi~dLe~MMaeW~a~g--------------------------- 52 (160) |.| |.||||..|||++|| ++--+ -..++++|++..|++||.+|+..+ T Consensus 1 ~sq--t~~~II~~ALk~aGvla~Get---p~aee~~DA~~~Ln~Ml~~W~~~rl~V~~~~~~t~vl~~G~~~YtVGi~~~ 75 (249) T protein:vir:10 1 MAR--TVGDIIRSSMRKIGVLAAGEP---LPANEGDDALEVFAQMVDAWTNETLLIPVVNVVTKVLVENQPEYTIGIYPE 75 (249) T ss_pred Ccc--CHHHHHHHHHHHccccccCCC---CCHhHHHHHHHHHHHHHHHHHhCceeEEeeeeeeeeccCCcceEEeeeccc Confidence 766 899999999999999 33333 458999999999999999996442 Q ss_pred ----------eeecc------------------------------------------------ccccCCCCCCc------ Q lcl|NC_011551. 53 ----------GDLGY------------------------------------------------QFSAEEENPTA------ 68 (160) Q Consensus 53 ----------i~~Gy------------------------------------------------~Fa~~~e~~~p------ 68 (160) |++|+ .......+|.| T Consensus 76 ~~~~~~p~~~i~~~RP~~i~sA~~r~~~d~~~~~~~i~~EdY~rI~~Kt~~~~ps~~f~d~g~p~g~i~vwP~P~~~~tl 155 (249) T protein:vir:10 76 PVPDPLPSNHIETGRPERILSAFIRDRYDTDYIQEIIDVETYSRISRKTNTSRPSRFYVSKGWPLNTILFESVPYQDETL 155 (249) T ss_pred cccccCCCCceEeecchheeeeeeecccccchhhhhhchhhhhhcCCCCCCCCceEEEEcCCCCcceEEEEecCCCCceE Confidence 22222 11111122333 Q ss_pred -----------------ccccCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhhccccccCCCCC Q lcl|NC_011551. 69 -----------------DDASGLPRKYKQVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLSVPSIARRGDMPV 131 (160) Q Consensus 69 -----------------~Dd~glp~~a~~AV~~nLA~riApdygie~~~~vi~~A~~ak~~Ll~a~~~~p~~~~~~~mP~ 131 (160) .|+..||++|..|+.||||++|+|+||+|.++.|+..|+.+|..|.+++++++.+..+.+++. T Consensus 156 ~~~v~~pL~~f~~~a~ltd~i~LPpey~~AL~~NLavel~peyG~ev~~~v~~~A~~a~~~ikraN~q~~~l~~~~~~~~ 235 (249) T protein:vir:10 156 HLEVVQPLSEILPTACLTDVINLPPGYERALIYNLCLELASEWGKEVTALVATQAVEGKKWLKRNNYRPLVLGADRAVAT 235 (249) T ss_pred EEEEEeehhhhccccccchhccCCHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHhccCcceeeeccccccc Confidence 367899999999999999999999999999999999999999999999999999976655554 Q ss_pred CCCCccccccceeeeeCCCC Q lcl|NC_011551. 132 GQGNNYTALGTASYYVERGF 151 (160) Q Consensus 132 G~gnr~~~~~~~~yy~~r~~ 151 (160) | +++-.-|-.+.|- T Consensus 236 ~------r~G~~~~~~~~~~ 249 (249) T protein:vir:10 236 Q------RKGIGTYIIEQGP 249 (249) T ss_pred c------cCcceEEEecCCC Confidence 4 3355666666652 No 9 >protein:vir:103760 Length: 207 # NCBI annotation: hypothetical protein # Family: family:all:1524 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024931;genbank:gi:48697201;genbank:GeneID:2846084 Probab=63.76 E-value=0.31 Score=23.36 Aligned_cols=148 Identities=12% Similarity=0.103 Sum_probs=79.2 Q ss_pred cchHHHHHHHHHHHhhcccccccCCCChHHH-----HHHHHHHHHHHHhhc-----------cCceeecccccc------ Q lcl|NC_011551. 4 PLTKGEIVLFALRKAGIASEATNIDVEPQSF-----EEGINDLEDLMAELQ-----------ITFGDLGYQFSA------ 61 (160) Q Consensus 4 ~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~-----e~gi~dLe~MMaeW~-----------a~gi~~Gy~Fa~------ 61 (160) |+|+=||.-.||.+||-.+=++++|=.++.. =+.+.+--.=++.|. +..-..||.++= T Consensus 1 M~S~v~IcN~AL~~lGa~~I~s~~e~s~~A~~c~~~Y~~~r~~~L~~~pW~FA~~r~~La~~~~~P~~~~~yaY~LP~Dc 80 (207) T protein:vir:10 1 MASQVGICNRALTKIGDKRITSLDEDSKAAATLNSMYDDVLDACLRAHVWSFTKARAQLAALAEAPLFGFSYQYRLPTDF 80 (207) T ss_pred CCCHHHHHHHHHHhhchhhhcccccCCHHHHHHHHhhHHHHHHHHhccChhhHhhhhhhcccccCCCCCCcccccCcccc Confidence 8899999999999999644444443222211 123333333445562 011112332110 Q ss_pred -----------------------CCC-------C-------CCcccccCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHH Q lcl|NC_011551. 62 -----------------------EEE-------N-------PTADDASGLPRKYKQVMGYQLMLRMLSDYGIEPTPRQEA 104 (160) Q Consensus 62 -----------------------~~e-------~-------~~p~Dd~glp~~a~~AV~~nLA~riApdygie~~~~vi~ 104 (160) ... . .+-.|..-.|+-+++|+.+.||-.||+..- =+..... T Consensus 81 lrv~~v~~~~~~~~~~~~~~~~v~g~~ll~~~~~~~~l~Y~~~v~d~~~fd~~F~~ala~~LAa~lA~pLt--~~~~~~~ 158 (207) T protein:vir:10 81 IRLLQVGQFDVYPRTDTRGLFSIENGNILTDMQAPLYIRYAKRVTDPNAMDALFREAFACRLAAEACESLT--QSATKRQ 158 (207) T ss_pred eEeeeecCCCCccccccccceEecCCeEEecCCCcEEEEEeecCCChhhhhHHHHHHHHHHHHHHhhHhhc--CChHHHH Confidence 000 0 000144457899999999999999988763 3455666 Q ss_pred HHHHHHHHHHHHhhhhccccccCCCCCCCCCccccccceeeeeCCCCccccCCC Q lcl|NC_011551. 105 SAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNADP 158 (160) Q Consensus 105 ~A~~ak~~Ll~a~~~~p~~~~~~~mP~G~gnr~~~~~~~~yy~~r~~~~~~~~~ 158 (160) .+...|+..+.....+-..+++ ..|.....-+..+. +.+|+++- .+--+ T Consensus 159 ~~~q~~~~~l~~A~~~da~e~~-~~~~~~~~~l~aR~-~~~~~~~~---~~~~~ 207 (207) T protein:vir:10 159 GAWAEHDQAIAAAIRVNAIERP-AQPLGDDTWLESRN-GVAFPGET---PIIRS 207 (207) T ss_pred HHHHHHHHHHHHHHhcccccCc-ccccCCcchhhhcc-cccccccC---CcccC Confidence 6777777776554444333333 34555555455544 56666652 22222 No 10 >protein:vir:7020 Length: 246 # NCBI annotation: tail protein # Family: family:all:824 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853593;genbank:gi:31711675;genbank:GeneID:1481801 Probab=63.03 E-value=0.32 Score=23.26 Aligned_cols=152 Identities=17% Similarity=0.162 Sum_probs=87.2 Q ss_pred CCccchHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhhccCceeeccccccCCC-CCCcc---------- Q lcl|NC_011551. 1 MTKPLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEE-NPTAD---------- 69 (160) Q Consensus 1 ~~~~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW~a~gi~~Gy~Fa~~~e-~~~p~---------- 69 (160) |.+++|+=|-|-.-||.||=++=.++.+ --.+++.+-+-|..++.+-+. -..-||-|.-++. +-.|| T Consensus 19 ~~~~~TeLdAVN~~L~aIGEsPV~sld~-~n~d~~~a~~iL~~v~~~vq~-~lseGW~FNte~~~~ltPD~~g~I~iP~n 96 (246) T protein:vir:70 19 FSIIDSKLEAVNLCMRAIGREGVDSLDS-GDLDAEDASKMLDIVSQRFQY-NKGGGWWFNREPNWRIVPDTNGEVNLPNN 96 (246) T ss_pred cccchhhHHHHHHHHHhhCccccccccC-CCccHHHHHHHHHHHHHHHHH-hccCCeeEeecCceeeccCCCCeEecCcc Confidence 8888999999999999999877666543 223455555555555544320 0112455543332 11111 Q ss_pred ----------------------------------------------------cccCCCHHHHHHHHHHHHHHHHHhhCCC Q lcl|NC_011551. 70 ----------------------------------------------------DASGLPRKYKQVMGYQLMLRMLSDYGIE 97 (160) Q Consensus 70 ----------------------------------------------------Dd~glp~~a~~AV~~nLA~riApdygie 97 (160) |=.-||.-+.+.|.+..|.+-+-+++-. T Consensus 97 ~L~v~~~~~~~~~~~~vv~RGgkLYD~~n~T~~F~~~~~~D~pv~v~IV~~~~FedLPe~~q~yI~~rAA~~f~~~~~gd 176 (246) T protein:vir:70 97 CLAVLQCYALGERKVPMTMRAGKLYSTWNHTFDMRSHVNKDGAIRLTLLTYLPFEHLPTSVMQAIAYQAAVEFIVSKDAD 176 (246) T ss_pred ceeeeeccCcccCceeeEEcCCeeEeecccceecccccccCcceEEEEEecCChhhhhHHHHHHHHHHHHHHHHhhccCc Confidence 1123799999999999999999998888 Q ss_pred CCHHHHHH--HHHHHHHHHHHhh---------hhccccccCCCCCCCCCccccccc--eeeeeCCCCcccc Q lcl|NC_011551. 98 PTPRQEAS--AAAAYDALLTDTL---------SVPSIARRGDMPVGQGNNYTALGT--ASYYVERGFHAKN 155 (160) Q Consensus 98 ~~~~vi~~--A~~ak~~Ll~a~~---------~~p~~~~~~~mP~G~gnr~~~~~~--~~yy~~r~~~~~~ 155 (160) ..-..+.+ +..++..+..... +.|.-+..+-| ||-.|...+|.+ |+=|+-||+..-. T Consensus 177 ~~~~~~~~~~e~~a~~~~~~~e~~q~~~Nml~~~~~~r~~r~m-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (246) T protein:vir:70 177 KTKLTTHQQIAAQLFVDVQSEQMSQKRLNMLVHNPTQRQFGIM-AGGSQNVPAYSHSPYDGHPLKPWESYR 246 (246) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCcceeeCchhhhhhhhh-hcccccccccccCCcCCccCCccccCC Confidence 77666655 3556666654433 23333334455 444444455433 2224444332221 No 11 >protein:vir:103305 Length: 245 # NCBI annotation: tail-like protein # Family: family:all:824 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039669;genbank:gi:125999998;genbank:GeneID:4818381 Probab=25.67 E-value=2 Score=18.90 Aligned_cols=147 Identities=19% Similarity=0.185 Sum_probs=77.9 Q ss_pred CCccch-----HHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhhccCceeeccccccCCC-CCCcc----- Q lcl|NC_011551. 1 MTKPLT-----KGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEE-NPTAD----- 69 (160) Q Consensus 1 ~~~~~T-----kgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW~a~gi~~Gy~Fa~~~e-~~~p~----- 69 (160) |+..|| +=|-|-.-||.||=++=.++ |.--.+++.+-+-|..|..+=|-. ..-||-|.-++. +-.|| T Consensus 13 ~~~~~~~~~dteLdAVN~~L~aIGEsPV~sl-d~~npdva~A~~IL~~v~~~vQ~l-lseGW~FNte~~~~ltPd~~g~i 90 (245) T protein:vir:10 13 LASVNLDTVDTRLEAINLCLRAVGYASIESE-DSGDLDAADASKILATVGQRVQYN-GGKGWWFNVEPNWQMTPDANGEI 90 (245) T ss_pred CcccccccccchHHHHHHHHHhhcccccccc-cCCchhHHHHHHHHHHHHHHHHhh-cCCCeeEeecCCceeccCCCCce Confidence 555443 33556666777776555443 344447888888898887775410 112455544332 11111 Q ss_pred ------------------------------------cc---------------------cCCCHHHHHHHHHHHHHHHHH Q lcl|NC_011551. 70 ------------------------------------DA---------------------SGLPRKYKQVMGYQLMLRMLS 92 (160) Q Consensus 70 ------------------------------------Dd---------------------~glp~~a~~AV~~nLA~riAp 92 (160) +. .-||.-+.++|.+.+|.+.+- T Consensus 91 ~iP~n~L~v~~~~~~~~~~~~~v~RGgkLYD~~n~T~~F~~pv~~~~~~~v~iV~~~pFedlPe~~q~yI~~rAA~~f~~ 170 (245) T protein:vir:10 91 LIPNNAIAAWQDVRYDDKKVLISIRGRKVYNMNTHSTDFSNSLNREGFFRMTFMLNLPFEHMPVSARQAIAYQAAVEFMV 170 (245) T ss_pred ecCccchhhhcccccCCCccceEEcCCeeEecccCceeccCccccccceeEEEEeeCChhhccHHHHHHHHHHHHHHHHh Confidence 11 137899999999999988764 Q ss_pred h-hCCCCCHHHH-HHHHHHHHHHHHHhhh---------hccccc-------cCCCCCCCCCccccccceeeeeCC Q lcl|NC_011551. 93 D-YGIEPTPRQE-ASAAAAYDALLTDTLS---------VPSIAR-------RGDMPVGQGNNYTALGTASYYVER 149 (160) Q Consensus 93 d-ygie~~~~vi-~~A~~ak~~Ll~a~~~---------~p~~~~-------~~~mP~G~gnr~~~~~~~~yy~~r 149 (160) . +|-.=..+.+ ..+..++..+...-.+ -|.-+. +++-|+=|-|-+++++||.-|-+. T Consensus 171 ~~~G~~~~~q~l~q~e~~a~~~~~~~~~~q~~~Nm~~~~p~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (245) T protein:vir:10 171 SKEFDAQKVQIWQQLAQQMQIDMGQESANQQSLNMFVNNPTQAHFGSMVGGPNANATFSRNPYNAYGGYSRYGRS 245 (245) T ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCchhhhcchhccccccccccccCCcccccccccccCC Confidence 4 3433223333 3344455555433322 222222 334444455555666666555443 No 12 >protein:vir:100027 Length: 204 # NCBI annotation: T7-like tail tubular protein A # Family: family:all:824 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214207;genbank:gi:61806430;genbank:GeneID:3294707 Probab=24.68 E-value=2.1 Score=18.76 Aligned_cols=141 Identities=16% Similarity=0.075 Sum_probs=81.0 Q ss_pred CCc----cchHHHHHHHHHHHhhcccccccCCCChHHHHHHHHHHHHHHHhhccCceeeccccccCCC---CCCcc---- Q lcl|NC_011551. 1 MTK----PLTKGEIVLFALRKAGIASEATNIDVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEE---NPTAD---- 69 (160) Q Consensus 1 ~~~----~~Tkgdiv~~Alrk~gvas~atl~Dvepqs~e~gi~dLe~MMaeW~a~gi~~Gy~Fa~~~e---~~~p~---- 69 (160) |+. .+|+=|-|---||.||=++=.++. .--.+++.+.+-|+....+-+. -||-|.-.+. +|+|+ T Consensus 1 ~~~~~~~~~teL~AVN~~L~aIGespV~sld-~~npdva~a~~iL~~v~~~vqs----~GW~FNte~~~~ltPd~~~g~I 75 (204) T protein:vir:10 1 MATTTIQPDTELSAVNSILGSIGQSPLTTLN-YNNPETAFVYNLLVEANKDVQG----EGWHFNTEDHVLVTPDATTKYI 75 (204) T ss_pred CceecccccchhHHHHHHHHhhCcccccccc-CCCccHHHHHHHHHHHHHHHhc----CCceeeccCCeeeeeeCCCCeE Confidence 543 257777777788888876666653 4445899999999999998874 4677765442 22221 Q ss_pred ---------------------------------------------------cccCCCHHHHHHHHHHHHHHHHHhhCCCC Q lcl|NC_011551. 70 ---------------------------------------------------DASGLPRKYKQVMGYQLMLRMLSDYGIEP 98 (160) Q Consensus 70 ---------------------------------------------------Dd~glp~~a~~AV~~nLA~riApdygie~ 98 (160) +-.-||.-+.+.|.+..|.+.+-.+-=.. T Consensus 76 ~~P~n~L~v~~~~~~~d~~~~~v~Rgg~LYD~~~~t~~f~~~i~v~iv~~~~FeelPe~~~~~I~~rAa~~f~~~~~g~~ 155 (204) T protein:vir:10 76 NVPSNYLRYDLHSGHVDKSMDLVKRNGRLYDKVGHTDQFDDDLYLDIVTLYPFEDVPPIFQRYIISKAAVRAATQLVANR 155 (204) T ss_pred EcCcceeeeeecCCcccccceeEEeCCeEEecccCceeecCcceEEEEeecChhhccHHHHHHHHHHHHHHHHhhcCCch Confidence 11238999999999999999876554333 Q ss_pred CH-HHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCccccccceeeeeCCCCccccC Q lcl|NC_011551. 99 TP-RQEASAAAAYDALLTDTLSVPSIARRGDMPVGQGNNYTALGTASYYVERGFHAKNA 156 (160) Q Consensus 99 ~~-~vi~~A~~ak~~Ll~a~~~~p~~~~~~~mP~G~gnr~~~~~~~~yy~~r~~~~~~~ 156 (160) +- +++.......... -..--..+++.+|=-+ .... +|++-|||..-.- T Consensus 156 ~~~q~l~~~e~~ar~~---~~~~e~~q~~~N~~~~--~~~~-----~~~~~~p~~~l~r 204 (204) T protein:vir:10 156 ELVALLQVQEQSARAN---VLEYECNQGDHSFMGW--PHES-----SYRPYQPYKALQR 204 (204) T ss_pred hHHHHHHHHHHHHHHH---HHHHhHhhcCcccccC--CCCC-----CccCcCchhhhcC Confidence 33 2332222222222 2233445566666322 1111 2444444433333 No 13 >protein:vir:105646 Length: 245 # NCBI annotation: putative tail tubular A protein # Family: family:all:824 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425010;genbank:gi:83571758;uniprot:Q2WC42;genbank:GeneID:3837287 Probab=20.19 E-value=2.8 Score=18.12 Aligned_cols=149 Identities=16% Similarity=0.182 Sum_probs=88.0 Q ss_pred CCccchHHHHHHHHHHHhhcccccccC--CCChHHHHHHHHHHHHHHHhhccCceeeccccccCCC-CCCcc-------- Q lcl|NC_011551. 1 MTKPLTKGEIVLFALRKAGIASEATNI--DVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEE-NPTAD-------- 69 (160) Q Consensus 1 ~~~~~Tkgdiv~~Alrk~gvas~atl~--Dvepqs~e~gi~dLe~MMaeW~a~gi~~Gy~Fa~~~e-~~~p~-------- 69 (160) .-.++|+=|-|-.-||.||=++=.+|- +++-+.+.-+..-|+....+-+.. ||-|.-++. +-.|| T Consensus 19 ~~~~~TeLdAVN~~L~aIGEsPV~sld~~~~~~~~va~al~~l~~~~r~vqse----GW~FNte~~~~ltPD~~g~I~iP 94 (245) T protein:vir:10 19 FQIIDSKLEAVNLCMRAIGREGVDSLDSGDLDAEDASKMIDIVSQRFQYNKGG----GWWFNREPNWQIAPDTNGEVNLP 94 (245) T ss_pred hhhhhhhHHHHHHHHHhhCccccceecCCCcchHHHHHHHHHHHHHHHHHccC----CeeEeecCCeeeccCCCCeEecC Confidence 334678888888889999987766653 566788888889999888775533 344433322 11111 Q ss_pred ------------------------------------------------------cccCCCHHHHHHHHHHHHHHHHHh-h Q lcl|NC_011551. 70 ------------------------------------------------------DASGLPRKYKQVMGYQLMLRMLSD-Y 94 (160) Q Consensus 70 ------------------------------------------------------Dd~glp~~a~~AV~~nLA~riApd-y 94 (160) |=.-||.-+.+.|.+..|.+.+-. + T Consensus 95 ~n~L~v~~~~~~~~~~~~~v~RggrLYD~~nhT~~F~~pi~~~~~~~v~Iv~~~pFEdLPe~~q~yI~~rAA~~f~~~~~ 174 (245) T protein:vir:10 95 NNCLAVLQCYALGEKKVPMTMRAGKLYSTWSHTFDMRKHVNANGMIRLTLLTLLPYEHLPTSVMQAIAYQAAVEFIVSKD 174 (245) T ss_pred ccceeeeccCccccccceeEeccceEEeccccceecccccccCcceEEEEEeeCChhhhhHHHHHHHHHHHHHHHHhhcc Confidence 112478999999999999887654 3 Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHhh---------hhccccccCCCCCCCCCccccccc--eeeeeCCCCccc Q lcl|NC_011551. 95 GIE-PTPRQEASAAAAYDALLTDTL---------SVPSIARRGDMPVGQGNNYTALGT--ASYYVERGFHAK 154 (160) Q Consensus 95 gie-~~~~vi~~A~~ak~~Ll~a~~---------~~p~~~~~~~mP~G~gnr~~~~~~--~~yy~~r~~~~~ 154 (160) |-. .-+.+...+..++..|...-. +.|.-++.+-| +|-.|...+|.+ |+=|.-||+.+. T Consensus 175 G~~~~~q~l~qee~~a~~~l~e~e~~q~~~Nml~~~~~~r~~r~m-~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (245) T protein:vir:10 175 ADQTKLATAQQIATQLLMDVQSEQMSQKRLNMLVHNPTQRQFGIM-AGGSQNVPAYSHSPYDSWALRPWEDR 245 (245) T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhCCcceeeCchhhhhhhhh-hcccccccccccCCccccCcCcccCC Confidence 322 223334445555555544322 33444445555 444555566544 344566665555 Done!