Query lcl|NC_011292.1_cdsid_YP_002242079.1 [gene=22] [protein=gp22] [protein_id=YP_002242079.1] [location=13448..13825] Match_columns 125 No_of_seqs 4 out of 7 Neff 1.7 Searched_HMMs 1612 Date Thu Nov 7 14:02:23 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_22 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_22_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:7446 Length: 110 # 100.0 3.4E-62 2.1E-65 357.6 4.1 109 3-112 1-110 (110) 2 protein:vir:102188 Length: 110 97.1 7.4E-07 4.6E-10 54.2 3.1 101 3-115 1-110 (110) 3 protein:vir:101506 Length: 110 97.1 7.4E-07 4.6E-10 54.2 3.1 101 3-115 1-110 (110) 4 protein:vir:3970 Length: 110 # 37.4 0.44 0.00027 22.5 3.7 90 1-107 1-110 (110) 5 protein:vir:741 Length: 110 # 33.3 0.68 0.00042 21.5 4.0 91 6-107 1-110 (110) 6 protein:vir:3615 Length: 110 # 27.0 0.99 0.00062 20.6 3.7 90 6-107 1-110 (110) 7 protein:vir:96221 Length: 110 17.6 2.5 0.0016 18.4 4.0 94 3-107 1-110 (110) 8 protein:vir:78849 Length: 110 17.6 2.5 0.0016 18.4 4.0 94 3-107 1-110 (110) 9 protein:vir:103957 Length: 110 17.6 2.5 0.0016 18.4 4.0 94 3-107 1-110 (110) 10 protein:vir:96390 Length: 110 17.6 2.5 0.0016 18.4 4.0 94 3-107 1-110 (110) No 1 >protein:vir:7446 Length: 110 # NCBI annotation: gp23 # Family: family:all:6924 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818561;genbank:gi:29566998;genbank:GeneID:1260273 Probab=100.00 E-value=3.4e-62 Score=357.56 Aligned_cols=109 Identities=51% Similarity=0.747 Sum_probs=108.6 Q ss_pred cchhHHHHHHHHhcccchhhccccHHHHHHHHhcccchHHHHHHHHHHhhhhhhhhhhhhhcccchhHHHHHHHHHHHHH Q lcl|NC_011292. 3 VADDAAVAAVLNQLPDEADVFGVDADYVGILLDSGLTETKVILSAWRAIAAKSSTMTNVSESGSSRDLSSIFDNARQMID 82 (125) Q Consensus 3 mAD~aAi~AVk~QlpdEA~~~G~d~~~IG~lLDSGLtqtK~ILa~wRaiaAKs~~m~~vsesgSSr~~~~~fdnarqmId 82 (125) ||||+||+|||+||||||++||||++|||+||||||||||+||++||+|||||++|++||||||||++ +|||||||||| T Consensus 1 madqsaidavklql~dea~~~gi~~~~ig~~ldsgls~tk~il~~wraiaaks~~~~~vsesgssr~~-~~~~~a~~mi~ 79 (110) T protein:vir:74 1 MADQSAIDAVKLQLADEANDLGITDIAIGAWLDSGLSQTKTILAGWRAIAAKSAATEDVSESGSSRTV-RLHERAVEMIR 79 (110) T ss_pred CccccccceeeeecccccccccccHHHHHHHHhcccchhHHHHHHhhhhhhcchhhhhhhhcCCccee-hhhHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999 Q ss_pred HHHHhhhhhhhhhcccc-cccceeeeecccc Q lcl|NC_011292. 83 VWQARADAEDKELITDN-GKARARVHTARRA 112 (125) Q Consensus 83 vWq~r~d~ED~~~~~d~-gk~r~rihtA~R~ 112 (125) +||+|+|+|||+++||| ||+|||+|||+|- T Consensus 80 ~wqar~daedk~~vtd~lg~~r~~~h~a~rv 110 (110) T protein:vir:74 80 DWQARSDAEDKATVTDTLGRGRFASHRATRV 110 (110) T ss_pred HhhhccCcchhhhhhcccccchhhhhhcccC Confidence 99999999999999999 9999999999998 No 2 >protein:vir:102188 Length: 110 # NCBI annotation: gp19 # Family: family:all:6924 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655215;genbank:gi:109522795;genbank:GeneID:4157427 Probab=97.13 E-value=7.4e-07 Score=54.20 Aligned_cols=101 Identities=31% Similarity=0.512 Sum_probs=75.1 Q ss_pred cchhHHHHHHHHhcccchhhccccHHHHHHHHhcccch--------HHHHHHHHHHhhhhhhhhhhhhhcccchhHHHHH Q lcl|NC_011292. 3 VADDAAVAAVLNQLPDEADVFGVDADYVGILLDSGLTE--------TKVILSAWRAIAAKSSTMTNVSESGSSRDLSSIF 74 (125) Q Consensus 3 mAD~aAi~AVk~QlpdEA~~~G~d~~~IG~lLDSGLtq--------tK~ILa~wRaiaAKs~~m~~vsesgSSr~~~~~f 74 (125) ||..|-+.-.|..|. |+| |+|-||-++. +|++-+-|-|.---.--.++||||||||...-|| T Consensus 1 maseadvqlfkthls------gvd----giwedseisdtidalgsvskavraywsgvvnttylltdvsesgssrnatiiy 70 (110) T protein:vir:10 1 MASEADVQLFKTHLS------GVD----GIWEDSEISDTIDALGSVSKAVRAYWSGVVNTTYLLTDVSESGSSRNATIIY 70 (110) T ss_pred CCchhhHHHHHHhhh------hcc----cccccchhhhHHHhhhhHHHHHHHHHhhhhhhhhheeeccccCCcccceeee Confidence 888877777776653 565 6676766654 5888888999888888889999999999999999 Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccc-cccceeeeeccccccc Q lcl|NC_011292. 75 DNARQMIDVWQARADAEDKELITDN-GKARARVHTARRAEQR 115 (125) Q Consensus 75 dnarqmIdvWq~r~d~ED~~~~~d~-gk~r~rihtA~R~e~r 115 (125) .||-+-+..|......||......+ |. +|..+-.||=.. T Consensus 71 rnameqlqrwdeiikeedakqeaetvgt--vrfnrisrnfss 110 (110) T protein:vir:10 71 RNAMEQLQRWDEIIKEEDAKQEAETVGT--VRFNRISRNFSS 110 (110) T ss_pred HhHHHHHHHHHHHhhhhhhhhhhhhhhh--hhhhhhhccccC Confidence 9999999999999888885433333 44 444444454322 No 3 >protein:vir:101506 Length: 110 # NCBI annotation: gp19 # Family: family:all:6924 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655398;genbank:gi:109522586;genbank:GeneID:4157578 Probab=97.13 E-value=7.4e-07 Score=54.20 Aligned_cols=101 Identities=31% Similarity=0.512 Sum_probs=75.1 Q ss_pred cchhHHHHHHHHhcccchhhccccHHHHHHHHhcccch--------HHHHHHHHHHhhhhhhhhhhhhhcccchhHHHHH Q lcl|NC_011292. 3 VADDAAVAAVLNQLPDEADVFGVDADYVGILLDSGLTE--------TKVILSAWRAIAAKSSTMTNVSESGSSRDLSSIF 74 (125) Q Consensus 3 mAD~aAi~AVk~QlpdEA~~~G~d~~~IG~lLDSGLtq--------tK~ILa~wRaiaAKs~~m~~vsesgSSr~~~~~f 74 (125) ||..|-+.-.|..|. |+| |+|-||-++. +|++-+-|-|.---.--.++||||||||...-|| T Consensus 1 maseadvqlfkthls------gvd----giwedseisdtidalgsvskavraywsgvvnttylltdvsesgssrnatiiy 70 (110) T protein:vir:10 1 MASEADVQLFKTHLS------GVD----GIWEDSEISDTIDALGSVSKAVRAYWSGVVNTTYLLTDVSESGSSRNATIIY 70 (110) T ss_pred CCchhhHHHHHHhhh------hcc----cccccchhhhHHHhhhhHHHHHHHHHhhhhhhhhheeeccccCCcccceeee Confidence 888877777776653 565 6676766654 5888888999888888889999999999999999 Q ss_pred HHHHHHHHHHHHhhhhhhhhhcccc-cccceeeeeccccccc Q lcl|NC_011292. 75 DNARQMIDVWQARADAEDKELITDN-GKARARVHTARRAEQR 115 (125) Q Consensus 75 dnarqmIdvWq~r~d~ED~~~~~d~-gk~r~rihtA~R~e~r 115 (125) .||-+-+..|......||......+ |. +|..+-.||=.. T Consensus 71 rnameqlqrwdeiikeedakqeaetvgt--vrfnrisrnfss 110 (110) T protein:vir:10 71 RNAMEQLQRWDEIIKEEDAKQEAETVGT--VRFNRISRNFSS 110 (110) T ss_pred HhHHHHHHHHHHHhhhhhhhhhhhhhhh--hhhhhhhccccC Confidence 9999999999999888885433333 44 444444454322 No 4 >protein:vir:3970 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663678;genbank:gi:21716115;genbank:GeneID:951203 Probab=37.44 E-value=0.44 Score=22.53 Aligned_cols=90 Identities=19% Similarity=0.233 Sum_probs=56.2 Q ss_pred CccchhHHHHHHHHhcccchhhccccHHHHHHHHh---------cccchHHHHHHHHHH----hhh------hhhhhhhh Q lcl|NC_011292. 1 MAVADDAAVAAVLNQLPDEADVFGVDADYVGILLD---------SGLTETKVILSAWRA----IAA------KSSTMTNV 61 (125) Q Consensus 1 ~~mAD~aAi~AVk~QlpdEA~~~G~d~~~IG~lLD---------SGLtqtK~ILa~wRa----iaA------Ks~~m~~v 61 (125) |. .+..||..|+.. +|.-+-.+++ .|...++ |-..+-- ++- .+-+|.+- T Consensus 1 M~-----iL~~vK~~lgi~------~D~lL~~li~~a~~~i~~~l~~~~~~-iP~~l~~iv~evav~ryNR~g~EG~~S~ 68 (110) T protein:vir:39 1 MA-----ITDDLKKLLGGS------SDERLEVIEKRTRERLLLILSSNIKE-VPPELEYVVLDVSLKRFNRIGQEGMQSY 68 (110) T ss_pred Cc-----hHHHHHHhcCCC------hhHHHHHHHHHHHHHHHHHhCCChhh-hhhHHHHHHHHHHHHHhcccccccccee Confidence 32 367788877753 2333333333 1221111 2222222 222 35689999 Q ss_pred hhcccchhH-HHHHHHHHHHHHHHHHhhhhhhhhhcccccccceeee Q lcl|NC_011292. 62 SESGSSRDL-SSIFDNARQMIDVWQARADAEDKELITDNGKARARVH 107 (125) Q Consensus 62 sesgSSr~~-~~~fdnarqmIdvWq~r~d~ED~~~~~d~gk~r~rih 107 (125) |++|=|.+. .+.|+.-...|+.|.+. +...+.++.++||.+ T Consensus 69 SeeG~S~sf~~~d~~~y~~~l~~y~~~-----~~~~~~~~~g~~~f~ 110 (110) T protein:vir:39 69 SQEGLSMTFSESDFDEYADEIESWRKS-----KETEGDKKIGRFRLY 110 (110) T ss_pred ecCCeeeeecccCcchhHHHHHHHhhh-----ccccccCcceeeeeC Confidence 999988887 47899999999999743 444566788999999 No 5 >protein:vir:741 Length: 110 # NCBI annotation: unknown # Family: family:all:372 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108718;genbank:gi:13487840;genbank:GeneID:920873 Probab=33.29 E-value=0.68 Score=21.49 Aligned_cols=91 Identities=19% Similarity=0.141 Sum_probs=53.8 Q ss_pred hHHHHHHHHhcccchhhccccHHHHHHHHh---------cccchHH---HHHHHHHHhhh------hhhhhhhhhhcccc Q lcl|NC_011292. 6 DAAVAAVLNQLPDEADVFGVDADYVGILLD---------SGLTETK---VILSAWRAIAA------KSSTMTNVSESGSS 67 (125) Q Consensus 6 ~aAi~AVk~QlpdEA~~~G~d~~~IG~lLD---------SGLtqtK---~ILa~wRaiaA------Ks~~m~~vsesgSS 67 (125) -+.+..||..|... +|.-+-.+++ .|...++ ..-...+-+|- .+-+|++-|++|=| T Consensus 1 M~~L~~vK~~lgi~------~D~lL~~li~~a~~~i~~~l~~~~~~iP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S 74 (110) T protein:vir:74 1 MAITYEIKKLLGGS------SDERLEIIEKRTRERLLLILGSDLKEVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLS 74 (110) T ss_pred ChHHHHHHHHcCCC------hhHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHhcccCccccceeecCCee Confidence 13455666665542 2222333222 1211111 11111222332 36689999999998 Q ss_pred hhH-HHHHHHHHHHHHHHHHhhhhhhhhhcccccccceeee Q lcl|NC_011292. 68 RDL-SSIFDNARQMIDVWQARADAEDKELITDNGKARARVH 107 (125) Q Consensus 68 r~~-~~~fdnarqmIdvWq~r~d~ED~~~~~d~gk~r~rih 107 (125) .+. .+.|+.-...|+.|.+. +...+.+|.++||.| T Consensus 75 ~sf~~~d~~~y~~~l~~y~~~-----~~~~~~~~~~~~~f~ 110 (110) T protein:vir:74 75 MTFSESDFDEYADEIESRRKS-----KETEGDKKIGRFRLY 110 (110) T ss_pred eeecccchhhHHHHHHHHHhh-----ccccccCcceeeeeC Confidence 887 47999999999999863 444556788999999 No 6 >protein:vir:3615 Length: 110 # NCBI annotation: ORF38 # Family: family:all:372 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112701;genbank:gi:13786569;genbank:GeneID:921067 Probab=27.02 E-value=0.99 Score=20.60 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=54.1 Q ss_pred hHHHHHHHHhcccchhhccccHHHHHHHHh---------cccchHHHHHHHH----HHhhh------hhhhhhhhhhccc Q lcl|NC_011292. 6 DAAVAAVLNQLPDEADVFGVDADYVGILLD---------SGLTETKVILSAW----RAIAA------KSSTMTNVSESGS 66 (125) Q Consensus 6 ~aAi~AVk~QlpdEA~~~G~d~~~IG~lLD---------SGLtqtK~ILa~w----RaiaA------Ks~~m~~vsesgS 66 (125) -+-+..||..|+.. +|.-+-.+++ .|...++ |-..+ +-++- .+-+|++-|++|= T Consensus 1 M~~L~~vK~~lg~~------~D~lL~~li~~a~~~i~~~~~~~~~e-iP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~ 73 (110) T protein:vir:36 1 MAITDDLKMLLGGS------LDERLEVIEKRTRDRLLLILGSDIKE-VPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGL 73 (110) T ss_pred ChhHHHHHhhcCCC------hhHHHHHHHHHHHHHHHHHhCCChhh-hhhHHHHHHHHHHHHHhccccccccceeecCCc Confidence 23466778777653 2223332222 2322111 11222 22222 3678999999998 Q ss_pred chhH-HHHHHHHHHHHHHHHHhhhhhhhhhcccccccceeee Q lcl|NC_011292. 67 SRDL-SSIFDNARQMIDVWQARADAEDKELITDNGKARARVH 107 (125) Q Consensus 67 Sr~~-~~~fdnarqmIdvWq~r~d~ED~~~~~d~gk~r~rih 107 (125) |.+. .+.|+.-...|+.|.+. +...+.++.++||.+ T Consensus 74 S~sf~~~d~~~y~~~l~~y~~~-----~~~~~~~~~g~~~f~ 110 (110) T protein:vir:36 74 SMTFSESDFDEYADEIESWRKS-----RETEGDKKIGRFRLY 110 (110) T ss_pred eeeecccCcchHHHHHHHHHhh-----hccccCCcceeeeeC Confidence 8866 47899999999999763 222356788999999 No 7 >protein:vir:96221 Length: 110 # NCBI annotation: ORF044 # Family: family:all:372 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239573;genbank:gi:66395333;genbank:GeneID:5132767 Probab=17.58 E-value=2.5 Score=18.36 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=44.6 Q ss_pred cchhHHHHHHHHhc--ccchhhcccc---HHHHHH-HHhcccchHHH---HHHHHHHhh------hhhhhhhhhhhcccc Q lcl|NC_011292. 3 VADDAAVAAVLNQL--PDEADVFGVD---ADYVGI-LLDSGLTETKV---ILSAWRAIA------AKSSTMTNVSESGSS 67 (125) Q Consensus 3 mAD~aAi~AVk~Ql--pdEA~~~G~d---~~~IG~-lLDSGLtqtK~---ILa~wRaia------AKs~~m~~vsesgSS 67 (125) |+. +.-||..| +|+-.|-=+. ..+.-. ++=.|+..+++ .-...+-++ -.+-+|++-|++|=| T Consensus 1 M~~---L~~vK~~lgI~d~~~D~lL~~ii~~a~~~i~~~l~~~~~~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:96 1 MTT---LADVKKRIGLKDEKQDEQLEEIIKSCESQLLSMLPIEVEQIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred Cch---HHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 322 22233222 2221110000 000000 01112211110 001112222 246789999999988 Q ss_pred hhH-HHHHHHHHHHHHHHHHhhhhhhhhhcccccccceeee Q lcl|NC_011292. 68 RDL-SSIFDNARQMIDVWQARADAEDKELITDNGKARARVH 107 (125) Q Consensus 68 r~~-~~~fdnarqmIdvWq~r~d~ED~~~~~d~gk~r~rih 107 (125) -+. .|.|+.-...|+.|.+- -...+|+++|.. T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~--------~~~~~kG~v~Fl 110 (110) T protein:vir:96 78 NAYELNDFKEYEAIIDNYFNA--------RTRTKKGRAVFF 110 (110) T ss_pred eeecccccchHHHHHHHHHhh--------cCCCCCceeeeC Confidence 877 46899999999999752 133467888887 No 8 >protein:vir:78849 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285363;genbank:gi:148717891;genbank:GeneID:5246980 Probab=17.58 E-value=2.5 Score=18.36 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=44.6 Q ss_pred cchhHHHHHHHHhc--ccchhhcccc---HHHHHH-HHhcccchHHH---HHHHHHHhh------hhhhhhhhhhhcccc Q lcl|NC_011292. 3 VADDAAVAAVLNQL--PDEADVFGVD---ADYVGI-LLDSGLTETKV---ILSAWRAIA------AKSSTMTNVSESGSS 67 (125) Q Consensus 3 mAD~aAi~AVk~Ql--pdEA~~~G~d---~~~IG~-lLDSGLtqtK~---ILa~wRaia------AKs~~m~~vsesgSS 67 (125) |+. +.-||..| +|+-.|-=+. ..+.-. ++=.|+..+++ .-...+-++ -.+-+|++-|++|=| T Consensus 1 M~~---L~~vK~~lgI~d~~~D~lL~~ii~~a~~~i~~~l~~~~~~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:78 1 MTT---LADVKKRIGLKDEKQDEQLEEIIKSCESQLLSMLPIEVEQIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred Cch---HHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 322 22233222 2221110000 000000 01112211110 001112222 246789999999988 Q ss_pred hhH-HHHHHHHHHHHHHHHHhhhhhhhhhcccccccceeee Q lcl|NC_011292. 68 RDL-SSIFDNARQMIDVWQARADAEDKELITDNGKARARVH 107 (125) Q Consensus 68 r~~-~~~fdnarqmIdvWq~r~d~ED~~~~~d~gk~r~rih 107 (125) -+. .|.|+.-...|+.|.+- -...+|+++|.. T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~--------~~~~~kG~v~Fl 110 (110) T protein:vir:78 78 NAYELNDFKEYEAIIDNYFNA--------RTRTKKGRAVFF 110 (110) T ss_pred eeecccccchHHHHHHHHHhh--------cCCCCCceeeeC Confidence 877 46899999999999752 133467888887 No 9 >protein:vir:103957 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873994;genbank:gi:118430769;genbank:GeneID:4525451 Probab=17.58 E-value=2.5 Score=18.36 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=44.6 Q ss_pred cchhHHHHHHHHhc--ccchhhcccc---HHHHHH-HHhcccchHHH---HHHHHHHhh------hhhhhhhhhhhcccc Q lcl|NC_011292. 3 VADDAAVAAVLNQL--PDEADVFGVD---ADYVGI-LLDSGLTETKV---ILSAWRAIA------AKSSTMTNVSESGSS 67 (125) Q Consensus 3 mAD~aAi~AVk~Ql--pdEA~~~G~d---~~~IG~-lLDSGLtqtK~---ILa~wRaia------AKs~~m~~vsesgSS 67 (125) |+. +.-||..| +|+-.|-=+. ..+.-. ++=.|+..+++ .-...+-++ -.+-+|++-|++|=| T Consensus 1 M~~---L~~vK~~lgI~d~~~D~lL~~ii~~a~~~i~~~l~~~~~~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:10 1 MTT---LADVKKRIGLKDEKQDEQLEEIIKSCESQLLSMLPIEVEQIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred Cch---HHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 322 22233222 2221110000 000000 01112211110 001112222 246789999999988 Q ss_pred hhH-HHHHHHHHHHHHHHHHhhhhhhhhhcccccccceeee Q lcl|NC_011292. 68 RDL-SSIFDNARQMIDVWQARADAEDKELITDNGKARARVH 107 (125) Q Consensus 68 r~~-~~~fdnarqmIdvWq~r~d~ED~~~~~d~gk~r~rih 107 (125) -+. .|.|+.-...|+.|.+- -...+|+++|.. T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~--------~~~~~kG~v~Fl 110 (110) T protein:vir:10 78 NAYELNDFKEYEAIIDNYFNA--------RTRTKKGRAVFF 110 (110) T ss_pred eeecccccchHHHHHHHHHhh--------cCCCCCceeeeC Confidence 877 46899999999999752 133467888887 No 10 >protein:vir:96390 Length: 110 # NCBI annotation: ORF048 # Family: family:all:372 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239650;genbank:gi:66395410;genbank:GeneID:5132866 Probab=17.58 E-value=2.5 Score=18.36 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=44.6 Q ss_pred cchhHHHHHHHHhc--ccchhhcccc---HHHHHH-HHhcccchHHH---HHHHHHHhh------hhhhhhhhhhhcccc Q lcl|NC_011292. 3 VADDAAVAAVLNQL--PDEADVFGVD---ADYVGI-LLDSGLTETKV---ILSAWRAIA------AKSSTMTNVSESGSS 67 (125) Q Consensus 3 mAD~aAi~AVk~Ql--pdEA~~~G~d---~~~IG~-lLDSGLtqtK~---ILa~wRaia------AKs~~m~~vsesgSS 67 (125) |+. +.-||..| +|+-.|-=+. ..+.-. ++=.|+..+++ .-...+-++ -.+-+|++-|++|=| T Consensus 1 M~~---L~~vK~~lgI~d~~~D~lL~~ii~~a~~~i~~~l~~~~~~iP~~l~~iv~ev~vkryNR~g~EG~~S~S~eG~S 77 (110) T protein:vir:96 1 MTT---LADVKKRIGLKDEKQDEQLEEIIKSCESQLLSMLPIEVEQIPERFSYMIKEVAVKRYNRIGAEGMTSEAVDGRS 77 (110) T ss_pred Cch---HHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHhcccCccccceeecCcee Confidence 322 22233222 2221110000 000000 01112211110 001112222 246789999999988 Q ss_pred hhH-HHHHHHHHHHHHHHHHhhhhhhhhhcccccccceeee Q lcl|NC_011292. 68 RDL-SSIFDNARQMIDVWQARADAEDKELITDNGKARARVH 107 (125) Q Consensus 68 r~~-~~~fdnarqmIdvWq~r~d~ED~~~~~d~gk~r~rih 107 (125) -+. .|.|+.-...|+.|.+- -...+|+++|.. T Consensus 78 ~sf~d~d~~~y~~~l~~y~~~--------~~~~~kG~v~Fl 110 (110) T protein:vir:96 78 NAYELNDFKEYEAIIDNYFNA--------RTRTKKGRAVFF 110 (110) T ss_pred eeecccccchHHHHHHHHHhh--------cCCCCCceeeeC Confidence 877 46899999999999752 133467888887 Done!