BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011285.1_cdsid_YP_002241438.1 [gene=24] [protein=gp24] [protein_id=YP_002241438.1] [location=14563..15405] (280 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|8237|lcl|protein:vir:101512 Length: 280 # NCBI annotation: gp... 568 e-164 gi|9086|lcl|protein:vir:102193 Length: 280 # NCBI annotation: gp... 568 e-164 gi|18805|lcl|protein:vir:7453 Length: 281 # NCBI annotation: gp3... 283 1e-78 gi|4167|lcl|protein:vir:94649 Length: 189 # NCBI annotation: hyp... 47 4e-07 gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp3... 44 2e-06 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 25 0.89 gi|11899|lcl|protein:vir:79133 Length: 169 # NCBI annotation: pu... 23 3.8 gi|7224|lcl|protein:vir:103277 Length: 216 # NCBI annotation: hy... 23 5.5 gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF... 22 6.8 >gi|8237|lcl|protein:vir:101512 Length: 280 # NCBI annotation: gp25 # Family: family:all:5054 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655404;genbank:gi:109522592;genbank:GeneI D:4157584 Length = 280 Score = 568 bits (1465), Expect = e-164, Method: Compositional matrix adjust. Identities = 280/280 (100%), Positives = 280/280 (100%) Query: 1 MAIDTALPYGLRDVKITPYADEGGTVLGDTSYDLPNAQTFSFNETEEFTELRGDDRLVAT 60 MAIDTALPYGLRDVKITPYADEGGTVLGDTSYDLPNAQTFSFNETEEFTELRGDDRLVAT Sbjct: 1 MAIDTALPYGLRDVKITPYADEGGTVLGDTSYDLPNAQTFSFNETEEFTELRGDDRLVAT 60 Query: 61 HGNGAQVDWSLEAGGISLVIWSILTGGQLIQSGLTPNRKEIMRKRGTDVRPYFRVDGQVM 120 HGNGAQVDWSLEAGGISLVIWSILTGGQLIQSGLTPNRKEIMRKRGTDVRPYFRVDGQVM Sbjct: 61 HGNGAQVDWSLEAGGISLVIWSILTGGQLIQSGLTPNRKEIMRKRGTDVRPYFRVDGQVM 120 Query: 121 SESGGDIVARVYRCRCNDNIGGDFGDGTFHITSCSGVGLPLLDEANDLLYDIIRNESKTS 180 SESGGDIVARVYRCRCNDNIGGDFGDGTFHITSCSGVGLPLLDEANDLLYDIIRNESKTS Sbjct: 121 SESGGDIVARVYRCRCNDNIGGDFGDGTFHITSCSGVGLPLLDEANDLLYDIIRNESKTS 180 Query: 181 LTLTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADEYRVQKSSDAGVTWSLVDDVDTA 240 LTLTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADEYRVQKSSDAGVTWSLVDDVDTA Sbjct: 181 LTLTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADEYRVQKSSDAGVTWSLVDDVDTA 240 Query: 241 TITISDLTASTAYQFRVATKVGSALSVYSAPLPVTTPAST 280 TITISDLTASTAYQFRVATKVGSALSVYSAPLPVTTPAST Sbjct: 241 TITISDLTASTAYQFRVATKVGSALSVYSAPLPVTTPAST 280 >gi|9086|lcl|protein:vir:102193 Length: 280 # NCBI annotation: gp24 # Family: family:all:5054 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655220;genbank:gi:109522800;genbank:GeneI D:4157432 Length = 280 Score = 568 bits (1465), Expect = e-164, Method: Compositional matrix adjust. Identities = 280/280 (100%), Positives = 280/280 (100%) Query: 1 MAIDTALPYGLRDVKITPYADEGGTVLGDTSYDLPNAQTFSFNETEEFTELRGDDRLVAT 60 MAIDTALPYGLRDVKITPYADEGGTVLGDTSYDLPNAQTFSFNETEEFTELRGDDRLVAT Sbjct: 1 MAIDTALPYGLRDVKITPYADEGGTVLGDTSYDLPNAQTFSFNETEEFTELRGDDRLVAT 60 Query: 61 HGNGAQVDWSLEAGGISLVIWSILTGGQLIQSGLTPNRKEIMRKRGTDVRPYFRVDGQVM 120 HGNGAQVDWSLEAGGISLVIWSILTGGQLIQSGLTPNRKEIMRKRGTDVRPYFRVDGQVM Sbjct: 61 HGNGAQVDWSLEAGGISLVIWSILTGGQLIQSGLTPNRKEIMRKRGTDVRPYFRVDGQVM 120 Query: 121 SESGGDIVARVYRCRCNDNIGGDFGDGTFHITSCSGVGLPLLDEANDLLYDIIRNESKTS 180 SESGGDIVARVYRCRCNDNIGGDFGDGTFHITSCSGVGLPLLDEANDLLYDIIRNESKTS Sbjct: 121 SESGGDIVARVYRCRCNDNIGGDFGDGTFHITSCSGVGLPLLDEANDLLYDIIRNESKTS 180 Query: 181 LTLTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADEYRVQKSSDAGVTWSLVDDVDTA 240 LTLTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADEYRVQKSSDAGVTWSLVDDVDTA Sbjct: 181 LTLTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADEYRVQKSSDAGVTWSLVDDVDTA 240 Query: 241 TITISDLTASTAYQFRVATKVGSALSVYSAPLPVTTPAST 280 TITISDLTASTAYQFRVATKVGSALSVYSAPLPVTTPAST Sbjct: 241 TITISDLTASTAYQFRVATKVGSALSVYSAPLPVTTPAST 280 >gi|18805|lcl|protein:vir:7453 Length: 281 # NCBI annotation: gp30 # Family: family:all:5054 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818568;genbank:gi:29567005;genbank:GeneID :1260207 Length = 281 Score = 283 bits (725), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 145/282 (51%), Positives = 188/282 (66%), Gaps = 11/282 (3%) Query: 3 IDTALPYGLRDVKITPYADEGGTVLGDTSYDLPNAQTFSFNETEEFTELRGDDRLVATHG 62 + TALPYG DVK+T Y D G VLG TS DLP QT +F E EEF ELRGDD+L+ T G Sbjct: 5 VSTALPYGCNDVKLTEYIDASGQVLGPTSVDLPYIQTLNFAEAEEFQELRGDDKLITTRG 64 Query: 63 NGAQVDWSLEAGGISLVIWSILTGGQLIQSGLTPNRKEIMRKRGTDVRPYFRVDGQVMSE 122 GA V+W LE+GG++ +W+ILTGG +I+ GL P R+ +RKRGT RP+FR+DG+++S+ Sbjct: 65 RGASVNWDLESGGMATEVWAILTGGDVIERGLPPYREVEVRKRGTQTRPWFRIDGKIISD 124 Query: 123 SGGDIVARVYRCRCNDNIGGDFGDGTFHITSCSGVGLPLLDEANDLLYDIIRNESKTSLT 182 SGGD++ R+YRCR NDNI +F DG F TS SGVG PLLD+ NDLLY I R E+ ++++ Sbjct: 125 SGGDVLVRIYRCRANDNIQANFADGEFTTTSVSGVGYPLLDDTNDLLYSIFRRETSSAIS 184 Query: 183 LTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADEYRVQKSSD------AGVTWSLVDD 236 LTPEPNP+QSP NL+ GT T S L WT VVGA EY + + D G + V Sbjct: 185 LTPEPNPVQSPLNLTVGTVTNNSAQLLWTPVVGATEYGIYSADDEDGPFEEGTPATSV-- 242 Query: 237 VDTATITISDLTASTAYQFRVATKVGSALSVYSAPLPVTTPA 278 +A +T + LTA + F+V VG S P+ VT P+ Sbjct: 243 --SANVTQTGLTAGPVW-FQVTATVGGVESDPCPPILVTVPS 281 >gi|4167|lcl|protein:vir:94649 Length: 189 # NCBI annotation: hypothetical protein # Family: family:all:5054 # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579214;genbank:gi:93007450;genbank:GeneID :5076768 Length = 189 Score = 46.6 bits (109), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 9/180 (5%) Query: 9 YGLRDVKITPYADE--GGT-VLGDTSYDLPNAQTFSFNETEEFTELRGDDRLVATHGNGA 65 + + D KIT + GGT V +S D+P ++ + + + LRGD+ L+ T Sbjct: 11 FSIVDCKITALTADPVGGTPVYASSSVDVPGIKSLAISGNMQSKTLRGDNTLLDTSAYID 70 Query: 66 QVDWSLEAGGISLVIWSILTGGQLIQSGLTPNRKEIMRKRGTDVRPYFRVDGQV----MS 121 V + E +SL +++ GG + SG TP +K + YF+++G S Sbjct: 71 GVTGAAEHALLSLDALAVMLGGTVTDSGTTPAQKSVWDLTNLSAPSYFKIEGVTPPNGSS 130 Query: 122 ESGGDIVARVYRCRCNDNIGGDFGDGTFHITSCSGVGLPLLDEANDLLYDIIRNESKTSL 181 GGD+ +++ + + F + I +PL +N I NE+ ++ Sbjct: 131 LIGGDVHVVLHKVQLSKFPELGFAGDDYRIPKFEVSAVPL--ASNGKWLSITFNETAVAI 188 >gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp31 # Family: family:all:1912 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818332;genbank:gi:29566768;genbank:GeneID :1260104 Length = 334 Score = 43.9 bits (102), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 5/59 (8%) Query: 218 EYRVQKSSDAGVTW--SLVDDVD---TATITISDLTASTAYQFRVATKVGSALSVYSAP 271 EY V+KS+D G TW ++++DV T TI +S +T+S +++FRV +AL+ SAP Sbjct: 267 EYEVEKSNDDGATWTDAVIEDVSGTATVTIRVSGVTSSASWKFRVKATGTNALTTTSAP 325 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 25.4 bits (54), Expect = 0.89, Method: Compositional matrix adjust. Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 160 PLLDEANDLLYDIIRNESKTSLTLTPEPNPLQSPQNLSAG 199 PL +E ND+ Y++++N L P + + QN+ G Sbjct: 448 PLFEE-NDIDYEVVKNTRAIQSLLAPRVEDMFAQQNIIFG 486 >gi|11899|lcl|protein:vir:79133 Length: 169 # NCBI annotation: putative tail tube protein gpFII # Family: family:all:129 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165277;genbank:gi:145708102;genbank:Ge neID:5247144 Length = 169 Score = 23.1 bits (48), Expect = 3.8, Method: Compositional matrix adjust. Identities = 8/19 (42%), Positives = 9/19 (47%) Query: 144 FGDGTFHITSCSGVGLPLL 162 F DG H C + LP L Sbjct: 13 FADGVVHTGECEEINLPKL 31 >gi|7224|lcl|protein:vir:103277 Length: 216 # NCBI annotation: hypothetical protein # Family: family:all:47 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277457;genbank:gi:71834099;genbank:GeneID :3562388 Length = 216 Score = 22.7 bits (47), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 31/83 (37%) Query: 173 IRNESKTSLTLTPEPNPLQSPQNLSAGTTTATSVVLTWTEVVGADEYRVQKSSDAGVTWS 232 +R + T+ T+T E P AG T + VLTW E+ + VT+ Sbjct: 62 LRVVTSTATTITVEGIDTTDPLQFPAGGTASIYKVLTWYEMPCVQDVSTDGGEQQFVTYQ 121 Query: 233 LVDDVDTATITISDLTASTAYQF 255 + D I +T Y F Sbjct: 122 CLADDREQQIPTYKSAVNTTYTF 144 >gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF025 # Family: family:all:1546 # MgeID: mge:163 # MgeName: phiKZ # Cross-refs: genbank:acc:NP_803591;genbank:gi:29134961;genbank:GeneID :1258246 Length = 717 Score = 22.3 bits (46), Expect = 6.8, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Query: 142 GDFGD----GTFHITSCSGVGLPLLDEANDLLYDIIRNESKTSLT 182 G FG+ F+I + G G PL + D L + +R S T +T Sbjct: 342 GSFGEIADRDFFNIWTVGGEGSPLSSDEKDKLKNNMREPSWTEIT 386 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.314 0.132 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 130,516 Number of Sequences: 514 Number of extensions: 5978 Number of successful extensions: 14 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1 Number of HSP's gapped (non-prelim): 12 length of query: 280 length of database: 206,069 effective HSP length: 70 effective length of query: 210 effective length of database: 170,089 effective search space: 35718690 effective search space used: 35718690 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 36 (18.5 bits)