Query lcl|NC_011285.1_cdsid_YP_002241433.1 [gene=19] [protein=gp19] [protein_id=YP_002241433.1] [location=12790..13197] Match_columns 135 No_of_seqs 6 out of 9 Neff 2.5 Searched_HMMs 1612 Date Thu Nov 7 13:40:50 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_19 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_19_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:102189 Length: 135 100.0 7.7E-83 4.8E-86 470.8 14.8 135 1-135 1-135 (135) 2 protein:vir:101507 Length: 135 100.0 7.7E-83 4.8E-86 470.8 14.8 135 1-135 1-135 (135) 3 protein:vir:7447 Length: 131 # 100.0 1.3E-69 8E-73 398.3 13.4 127 1-135 1-131 (131) 4 protein:vir:104346 Length: 123 60.4 0.37 0.00023 22.9 9.4 114 1-130 1-123 (123) 5 protein:vir:107669 Length: 123 54.8 0.49 0.00031 22.3 7.8 113 1-130 1-123 (123) 6 protein:vir:79639 Length: 123 32.2 1.4 0.00089 19.7 7.7 115 1-130 1-123 (123) 7 protein:vir:103364 Length: 103 7.0 2.6 0.0016 18.3 0.3 48 1-56 979-1031(1031) 8 protein:vir:96439 Length: 1031 6.8 2.6 0.0016 18.3 0.2 48 1-56 979-1031(1031) 9 protein:vir:5258 Length: 123 # 4.2 16 0.01 14.0 6.6 113 11-135 1-118 (123) 10 protein:vir:80104 Length: 124 3.6 19 0.012 13.6 3.4 110 13-131 1-124 (124) No 1 >protein:vir:102189 Length: 135 # NCBI annotation: gp20 # Family: family:all:6925 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655216;genbank:gi:109522796;genbank:GeneID:4157428 Probab=100.00 E-value=7.7e-83 Score=470.76 Aligned_cols=135 Identities=100% Similarity=1.511 Sum_probs=134.9 Q ss_pred CcccchhhhhHHHHHHhhhhhhcCCCceEEEeCCcceEEeCCCCccccCCCCCCCcceEEEEeeCCCcceeeccccCccc Q lcl|NC_011285. 1 MTVSASAQRGLEFLRAGTRAFIDDDPTTIVLNRGQATRVEKPGGGYDFTPGAPRTAQIFKVINQTGDGSALTEAQDGIQT 80 (135) Q Consensus 1 ~~~~~~~~~~L~~~RkgT~~fi~~dpttIvL~p~~~t~vekpGG~~d~~~g~pRppQ~Fkvi~~~gd~~~~~~~adG~~T 80 (135) |||||||||||+++||||+||||+|||+|+|+|+++|+||||||+|+|+|+||||||+|||||||||++++++++||++| T Consensus 1 ~~~~~~~~~~l~~~Rk~T~~FI~~Dpt~ivL~p~~~t~~ekPgG~~~~~~gppR~pQ~Fkvi~~~gdg~~~t~~~dgg~T 80 (135) T protein:vir:10 1 MTVSASAQRGLEFLRAGTRAFIDDDPTTIVLNRGQATRVEKPGGGYDFTPGAPRTAQIFKVINQTGDGSALTEAQDGIQT 80 (135) T ss_pred CccccchhhhHHHHhhhhhhhhcCCCceEEEECCcceEEecCCCCcccCCCCCCCcceEEEEecCCCcceeeccccCccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeEEEEeccccceeeecceEeeCCcEEEEEEEecCCCceEEEEEEEecCCCCCC Q lcl|NC_011285. 81 PVREYILLGAHDSVAEVGDWWVDGNNRYTVTELLVANGYERKWRVRSVGLEPNYG 135 (135) Q Consensus 81 ~~fdy~lVGa~DAvveIGD~Wteg~~~Y~Vt~v~p~NgYEvKa~~vs~G~~P~hG 135 (135) |||||||||+|||+|||||||+||+++|+|++|+|+|||||||+++|||++|+|| T Consensus 81 rrfdfilvG~~DAvveiGD~W~egd~~YvVe~l~~~ngYEvK~~~vs~g~~p~hG 135 (135) T protein:vir:10 81 PVREYILLGAHDSVAEVGDWWVDGNNRYTVTELLVANGYERKWRVRSVGLEPNYG 135 (135) T ss_pred ceeEEEEeecccceeeecceeecCCCcEEEEEEecCCCeEEeeeEEEeccCCCCC Confidence 9999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:101507 Length: 135 # NCBI annotation: gp20 # Family: family:all:6925 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655399;genbank:gi:109522587;genbank:GeneID:4157579 Probab=100.00 E-value=7.7e-83 Score=470.76 Aligned_cols=135 Identities=100% Similarity=1.511 Sum_probs=134.9 Q ss_pred CcccchhhhhHHHHHHhhhhhhcCCCceEEEeCCcceEEeCCCCccccCCCCCCCcceEEEEeeCCCcceeeccccCccc Q lcl|NC_011285. 1 MTVSASAQRGLEFLRAGTRAFIDDDPTTIVLNRGQATRVEKPGGGYDFTPGAPRTAQIFKVINQTGDGSALTEAQDGIQT 80 (135) Q Consensus 1 ~~~~~~~~~~L~~~RkgT~~fi~~dpttIvL~p~~~t~vekpGG~~d~~~g~pRppQ~Fkvi~~~gd~~~~~~~adG~~T 80 (135) |||||||||||+++||||+||||+|||+|+|+|+++|+||||||+|+|+|+||||||+|||||||||++++++++||++| T Consensus 1 ~~~~~~~~~~l~~~Rk~T~~FI~~Dpt~ivL~p~~~t~~ekPgG~~~~~~gppR~pQ~Fkvi~~~gdg~~~t~~~dgg~T 80 (135) T protein:vir:10 1 MTVSASAQRGLEFLRAGTRAFIDDDPTTIVLNRGQATRVEKPGGGYDFTPGAPRTAQIFKVINQTGDGSALTEAQDGIQT 80 (135) T ss_pred CccccchhhhHHHHhhhhhhhhcCCCceEEEECCcceEEecCCCCcccCCCCCCCcceEEEEecCCCcceeeccccCccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeEEEEeccccceeeecceEeeCCcEEEEEEEecCCCceEEEEEEEecCCCCCC Q lcl|NC_011285. 81 PVREYILLGAHDSVAEVGDWWVDGNNRYTVTELLVANGYERKWRVRSVGLEPNYG 135 (135) Q Consensus 81 ~~fdy~lVGa~DAvveIGD~Wteg~~~Y~Vt~v~p~NgYEvKa~~vs~G~~P~hG 135 (135) |||||||||+|||+|||||||+||+++|+|++|+|+|||||||+++|||++|+|| T Consensus 81 rrfdfilvG~~DAvveiGD~W~egd~~YvVe~l~~~ngYEvK~~~vs~g~~p~hG 135 (135) T protein:vir:10 81 PVREYILLGAHDSVAEVGDWWVDGNNRYTVTELLVANGYERKWRVRSVGLEPNYG 135 (135) T ss_pred ceeEEEEeecccceeeecceeecCCCcEEEEEEecCCCeEEeeeEEEeccCCCCC Confidence 9999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:7447 Length: 131 # NCBI annotation: gp24 # Family: family:all:6925 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818562;genbank:gi:29566999;genbank:GeneID:1260239 Probab=100.00 E-value=1.3e-69 Score=398.27 Aligned_cols=127 Identities=36% Similarity=0.530 Sum_probs=120.6 Q ss_pred CcccchhhhhHHHHHHhhhhhhcCCCceEEEeCCcceEEeCCCCccccCCCCCCCcceEEEEeeCCCcceeeccccCccc Q lcl|NC_011285. 1 MTVSASAQRGLEFLRAGTRAFIDDDPTTIVLNRGQATRVEKPGGGYDFTPGAPRTAQIFKVINQTGDGSALTEAQDGIQT 80 (135) Q Consensus 1 ~~~~~~~~~~L~~~RkgT~~fi~~dpttIvL~p~~~t~vekpGG~~d~~~g~pRppQ~Fkvi~~~gd~~~~~~~adG~~T 80 (135) |. ..-|+++||||+|||++|||||||+| +..|||||+|+|+|+||||||+|||||||||++++++++||++| T Consensus 1 ~~-----~~el~~~Rk~T~~FI~~Dpt~ivL~~---~~~~rpgG~~~~~~gppR~pQ~Fkvi~~~gd~~~~~~tadg~~T 72 (131) T protein:vir:74 1 MN-----AAELALHRKGTRDFINRDKTSLVLYP---TNETWVAGTKVYNDVPPRPAQDFKVIWPGADQGGKVNTDEGTET 72 (131) T ss_pred Cc-----hhHhHHHhhhhhhhhcCCCceEEEec---cccccCCCccccCCCCCCCcceEEEEecCCCccceeeeccCccc Confidence 32 23589999999999999999999998 55667999999999999999999999999999999999999999 Q ss_pred ceeEEEEeccccceeeecceEeeCC----cEEEEEEEecCCCceEEEEEEEecCCCCCC Q lcl|NC_011285. 81 PVREYILLGAHDSVAEVGDWWVDGN----NRYTVTELLVANGYERKWRVRSVGLEPNYG 135 (135) Q Consensus 81 ~~fdy~lVGa~DAvveIGD~Wteg~----~~Y~Vt~v~p~NgYEvKa~~vs~G~~P~hG 135 (135) |||||||||+|||+|||||||+||+ |+|+|++|+|+|||||||+++|||++|+|| T Consensus 73 rrfdfilvG~~DAvveiGD~W~eGd~~~~q~YvV~~l~~~ngYevK~~~~s~g~~p~hG 131 (131) T protein:vir:74 73 SRYDFILVGNWDAVVEIGDHWTEGDDENRQTYVVEWVQPYNGYEVKAGGVSHGDSPSHG 131 (131) T ss_pred ceeEEEEeecccceeeecceeecCCCCccceEEEEEeecCCCeEEeeeEEEeccCCCCC Confidence 9999999999999999999999988 669999999999999999999999999999 No 4 >protein:vir:104346 Length: 123 # NCBI annotation: conserved phage-related protein # Family: family:all:704 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398974;genbank:gi:81343958;genbank:GeneID:3778878 Probab=60.39 E-value=0.37 Score=22.93 Aligned_cols=114 Identities=14% Similarity=-0.001 Sum_probs=67.2 Q ss_pred CcccchhhhhHHHHHHhhhhhhc--CCCceEEEeCCcceEEeCCCCcccc-CCCCCCCcceEEEEeeCCCcceeeccccC Q lcl|NC_011285. 1 MTVSASAQRGLEFLRAGTRAFID--DDPTTIVLNRGQATRVEKPGGGYDF-TPGAPRTAQIFKVINQTGDGSALTEAQDG 77 (135) Q Consensus 1 ~~~~~~~~~~L~~~RkgT~~fi~--~dpttIvL~p~~~t~vekpGG~~d~-~~g~pRppQ~Fkvi~~~gd~~~~~~~adG 77 (135) |. -+-+++-++.-|+ .|+....+.- . .||++++- ....+-|.|.|.++--... -..+.=|| T Consensus 1 mn--------Y~~l~~~a~~lI~~f~~~~gv~~~~-----t-~~~~v~~v~G~ev~~p~~~~~~~Gv~~~--y~~r~IDG 64 (123) T protein:vir:10 1 MN--------YNEIESITRDGINFFSDANGVYEMS-----T-GAGYVEIVNGVEVEVPAQTFQLKGLVRE--IKTRDIDG 64 (123) T ss_pred CC--------hHHHHHHHHHHHHHhCCCCCceEEe-----c-CCCeeeCCCCceeeccceeEeeEEEecc--CChhhccc Confidence 43 2223333333333 3332222111 1 34444532 2334456688887721111 11233577 Q ss_pred cccceeEEEEeccccceeeecceEeeCCcEEEEEEEecCCC------ceEEEEEEEecC Q lcl|NC_011285. 78 IQTPVREYILLGAHDSVAEVGDWWVDGNNRYTVTELLVANG------YERKWRVRSVGL 130 (135) Q Consensus 78 ~~T~~fdy~lVGa~DAvveIGD~Wteg~~~Y~Vt~v~p~Ng------YEvKa~~vs~G~ 130 (135) ...+.=|=-++=+-|..+..||.=+=++-.|+|..+.|-|+ |+.-.+.||++- T Consensus 65 ~lIq~gD~~~i~~a~~eik~Gd~i~vdGe~~rVV~~~pikPa~~~v~y~~qlRrv~~~~ 123 (123) T protein:vir:10 65 EFIQFGDKRGIFTAQVEIKQGYQIKVDGETFVVVDPRPVKPTGTTVGYRPILRRVATYG 123 (123) T ss_pred eeeeeccEEEEEecCceeccCCEEEECCeEEEEecCCccCccceeEEEeeeeeeeeecC Confidence 66665566666666778888999999999999999999885 899999999866 No 5 >protein:vir:107669 Length: 123 # NCBI annotation: hypothetical protein # Family: family:all:704 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003901;genbank:gi:45686317;genbank:GeneID:2773009 Probab=54.84 E-value=0.49 Score=22.26 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=77.0 Q ss_pred CcccchhhhhHHHHHHhhhhhhc---CCCceEEEeCCcceEEeCCCCcc-ccCCCCCCCcceEEEEeeCCCcceeecccc Q lcl|NC_011285. 1 MTVSASAQRGLEFLRAGTRAFID---DDPTTIVLNRGQATRVEKPGGGY-DFTPGAPRTAQIFKVINQTGDGSALTEAQD 76 (135) Q Consensus 1 ~~~~~~~~~~L~~~RkgT~~fi~---~dpttIvL~p~~~t~vekpGG~~-d~~~g~pRppQ~Fkvi~~~gd~~~~~~~ad 76 (135) |. -+.+++.++.-|+ +-.-.-.|.. +||+++ .++..-+-|.|.|++.-- -..-..+.=| T Consensus 1 mN--------Y~~i~~~a~~~I~~fsd~~g~~~l~t-------~~~~~~~v~G~Ev~~p~~~~~~~G~--~~~y~~reID 63 (123) T protein:vir:10 1 MN--------YSQIERMARKGVAFFTDPSRPMNLIK-------QGEYGYDENGFEIPPMEQVIPISGA--TRRPNAREID 63 (123) T ss_pred CC--------hHHHHHHHHHHHhhhcCCCCeEEeee-------CCcccccCCCeecccCCeeeeeEEE--Eeeccccccc Confidence 32 4567777777444 3344444444 445333 344556778899988633 2233456678 Q ss_pred CcccceeEEEEeccccceeeecceEeeCCcEEEEEEEecCCC------ceEEEEEEEecC Q lcl|NC_011285. 77 GIQTPVREYILLGAHDSVAEVGDWWVDGNNRYTVTELLVANG------YERKWRVRSVGL 130 (135) Q Consensus 77 G~~T~~fdy~lVGa~DAvveIGD~Wteg~~~Y~Vt~v~p~Ng------YEvKa~~vs~G~ 130 (135) |.....=|--++=+-|..|+.||.=.=++-.|+|...-|-++ |.--.+.||++- T Consensus 64 G~lI~~gDvk~if~a~veik~Gd~I~vDg~~~rVV~~~pvkPa~~~I~y~~qLRrv~~~~ 123 (123) T protein:vir:10 64 GETIRASDILGIFNNDHEINEGDYIEIDGIRHVVVDARPVQASLEPVAYRPVLRRVSVGG 123 (123) T ss_pred cceeeeccEEEeeccceeeccCCEEEECCeEEEEecCcccchhhhhhhhhhhhceeccCC Confidence 877777788888889999999999999999999998877664 666667777655 No 6 >protein:vir:79639 Length: 123 # NCBI annotation: gp39 # Family: family:all:704 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285528;genbank:gi:148734511;genbank:GeneID:5219997 Probab=32.25 E-value=1.4 Score=19.72 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=78.4 Q ss_pred CcccchhhhhHH-HHHHhhhhhhcCCCceEEEeCCcceEEeCCCCccc-cCCCCCCCcceEEEEeeCCCcceeeccccCc Q lcl|NC_011285. 1 MTVSASAQRGLE-FLRAGTRAFIDDDPTTIVLNRGQATRVEKPGGGYD-FTPGAPRTAQIFKVINQTGDGSALTEAQDGI 78 (135) Q Consensus 1 ~~~~~~~~~~L~-~~RkgT~~fi~~dpttIvL~p~~~t~vekpGG~~d-~~~g~pRppQ~Fkvi~~~gd~~~~~~~adG~ 78 (135) |.-+. |+ .-|++.+.|-|.+--+=.|. +||+.|| ++...+-|.|.|.+.--... -..+.=||. T Consensus 1 mNy~~-----l~~~~~~~I~~fsd~~G~~~~~t--------~~g~~~dv~G~ev~~p~~~~~~~Gv~~~--~~~reIDg~ 65 (123) T protein:vir:79 1 MNYEQ-----IRSMASAGINFFSDGTGEFDCIT--------QPGSVEIVGGIEVEKPEIKVKIKGLVRA--PRTREVDGE 65 (123) T ss_pred CchHH-----HHHHHHHHHHhhccCCCceeeee--------cCcceeecCCeeccccceEEeEEEEeec--CCccccCCe Confidence 44332 22 23557777766554443333 4566665 34456778899988654332 334456887 Q ss_pred ccceeEEEEeccccceeeecceEeeCCcEEEEEEEecCCC------ceEEEEEEEecC Q lcl|NC_011285. 79 QTPVREYILLGAHDSVAEVGDWWVDGNNRYTVTELLVANG------YERKWRVRSVGL 130 (135) Q Consensus 79 ~T~~fdy~lVGa~DAvveIGD~Wteg~~~Y~Vt~v~p~Ng------YEvKa~~vs~G~ 130 (135) ....=|--++=+-|..|+.||.=+=++-.|+|....|-++ |.--++.||++- T Consensus 66 lIq~gDvk~i~~a~veik~Gd~i~vDge~~rVV~~~pvkPa~~~I~y~~qLRrv~~~~ 123 (123) T protein:vir:79 66 VIRVTDKLGVFNADVELKNGYQIDIDGERYVMVETRPIRPTSITVAYRPIMRRVAVHG 123 (123) T ss_pred eEEeccEEEEEecceeeccCCEEEECCeEEEEecCccccchhhhhhhhhhhcccccCC Confidence 7777787888888999999999999999999999998775 777777787755 No 7 >protein:vir:103364 Length: 1031 # NCBI annotation: hypothetical protein # Family: family:all:11264 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024749;genbank:gi:48697091;genbank:GeneID:2846032 Probab=7.02 E-value=2.6 Score=18.35 Aligned_cols=48 Identities=33% Similarity=0.392 Sum_probs=32.0 Q ss_pred CcccchhhhhHHHHHHhhhhhhc-----CCCceEEEeCCcceEEeCCCCccccCCCCCCCc Q lcl|NC_011285. 1 MTVSASAQRGLEFLRAGTRAFID-----DDPTTIVLNRGQATRVEKPGGGYDFTPGAPRTA 56 (135) Q Consensus 1 ~~~~~~~~~~L~~~RkgT~~fi~-----~dpttIvL~p~~~t~vekpGG~~d~~~g~pRpp 56 (135) +.--.||..-+-|||.+ ||||- -|-.||||+- ||=|-+++-.-|=-|- T Consensus 979 lqgypsataeipflrta-rwfivelrgqfdissivlyg-------kpvgrlrfvsdpftpt 1031 (1031) T protein:vir:10 979 LQGYPSATAEIPFLRTA-RWFIVELRGQFDISSIVLYG-------KPVGRLRFVSDPFTPT 1031 (1031) T ss_pred eecccccccccceeecc-eEEEEEeecccceeeEEEec-------cccceeeeecCCCCCC Confidence 22234555567788864 89984 4778999986 7778888766554443 No 8 >protein:vir:96439 Length: 1031 # NCBI annotation: hypothetical protein # Family: family:all:11264 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218823;genbank:gi:147917340;genbank:GeneID:5142642 Probab=6.84 E-value=2.6 Score=18.32 Aligned_cols=48 Identities=33% Similarity=0.392 Sum_probs=32.0 Q ss_pred CcccchhhhhHHHHHHhhhhhhc-----CCCceEEEeCCcceEEeCCCCccccCCCCCCCc Q lcl|NC_011285. 1 MTVSASAQRGLEFLRAGTRAFID-----DDPTTIVLNRGQATRVEKPGGGYDFTPGAPRTA 56 (135) Q Consensus 1 ~~~~~~~~~~L~~~RkgT~~fi~-----~dpttIvL~p~~~t~vekpGG~~d~~~g~pRpp 56 (135) +.--.||..-+-|||.+ ||||- -|-.+|||+- ||=|-+++-.-|=-|- T Consensus 979 lqgypsataeipflrta-rwfivelrgqfdissivlyg-------kpvgrlrfvsdpftpt 1031 (1031) T protein:vir:96 979 LQGYPSATAEIPFLRTA-RWFIVELRGQFDISSIVLYG-------KPVGRLRFVSDPFTPT 1031 (1031) T ss_pred eecccccccccceeecc-eEEEEEeecccceeeEEEec-------cccceeeeecCCCCCC Confidence 22234555567788864 89984 4778999986 7778888766554443 No 9 >protein:vir:5258 Length: 123 # NCBI annotation: hypothetical protein # Family: family:all:4880 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852763;genbank:gi:31544038;uniprot:Q776V7;genbank:GeneID:2777139 Probab=4.20 E-value=16 Score=13.95 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=60.9 Q ss_pred HHHHHHhhhhhhcCC-CceEEEeCCcceEEeCCCCccccCCCCCCCcc-eEEEEeeCCCcceeeccccCcccceeEEEEe Q lcl|NC_011285. 11 LEFLRAGTRAFIDDD-PTTIVLNRGQATRVEKPGGGYDFTPGAPRTAQ-IFKVINQTGDGSALTEAQDGIQTPVREYILL 88 (135) Q Consensus 11 L~~~RkgT~~fi~~d-pttIvL~p~~~t~vekpGG~~d~~~g~pRppQ-~Fkvi~~~gd~~~~~~~adG~~T~~fdy~lV 88 (135) +.+| .-+-.|+|.| -++|...+.+.+++ +|| .... + .+| ...++.|....-. ..-+||-.. ..=|-+ T Consensus 1 m~~l-dvs~v~ldpdF~~titv~R~~g~~~--~~g-~~~~--t--~~~t~~avVqP~~~~dl-q~LpeG~ri--~~sIkI 69 (123) T protein:vir:52 1 MSLI-NQSGRFLNSRFRQQITVQKQSGSHS--ASG-FDVR--Y--EKQQITAIVIPTSPNDV-LLLPEGERY--LPSIKV 69 (123) T ss_pred CCcc-cccccccCcccCceEEEEccCccEe--CCc-cccc--c--ccceEEEEEeeCChhhc-ccccccccc--cceEEE Confidence 2222 1344555544 34577788888887 244 3322 2 244 4467777554333 334566321 111111 Q ss_pred ccccceeeecceEeeCCcEEEEEEEecCCCce-EEEEEEEec--CCCCCC Q lcl|NC_011285. 89 GAHDSVAEVGDWWVDGNNRYTVTELLVANGYE-RKWRVRSVG--LEPNYG 135 (135) Q Consensus 89 Ga~DAvveIGD~Wteg~~~Y~Vt~v~p~NgYE-vKa~~vs~G--~~P~hG 135 (135) --|+.+.+||-=.-.+.+|+|+.+.+.+-|- -|+-++-|- ..|.-| T Consensus 70 -~Tq~~L~vGD~vlw~G~~YrVi~~~d~s~YGYy~~i~~~~~~t~~~~~~ 118 (123) T protein:vir:52 70 -YTQQQLNIGDLVDYRGQTYKIKTAANWGDYGYYNNIGVRHSQTAKVDST 118 (123) T ss_pred -EeccccccccEEEeCCcEEEEEEcCCccccceecceeecccccCccccc Confidence 1356777899888889999999999986553 233333332 223344 No 10 >protein:vir:80104 Length: 124 # NCBI annotation: gp12 # Family: family:all:4890 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468716;genbank:gi:157325296;genbank:GeneID:5601795 Probab=3.57 E-value=19 Score=13.57 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=60.4 Q ss_pred HHHHhhhhhhcCCCceEEEeCCcceEEeCCCCccccCCCC-----CCCcce-EEEEeeCC--CcceeeccccCcccceeE Q lcl|NC_011285. 13 FLRAGTRAFIDDDPTTIVLNRGQATRVEKPGGGYDFTPGA-----PRTAQI-FKVINQTG--DGSALTEAQDGIQTPVRE 84 (135) Q Consensus 13 ~~RkgT~~fi~~dpttIvL~p~~~t~vekpGG~~d~~~g~-----pRppQ~-Fkvi~~~g--d~~~~~~~adG~~T~~fd 84 (135) .+|--=..+|+.=-=.|-+.|.. | .||-++.+.=- +.+|+. -.-|-|.. -++-+..+-+|++.-+|| T Consensus 1 m~~M~Fasmi~~fGVpi~V~~~~----~-~gg~~~~G~w~~~~~~~~~~~~~~EPviP~s~~t~~~q~~~~tgG~~~~~d 75 (124) T protein:vir:80 1 MEKMIFQSLLDSFGVPLTVFPKQ----E-KGGEFVNGEWVVSQLDETSKIEVNEPFIPSSLMTQMPQTSAYTAARYEKYE 75 (124) T ss_pred CcccchhhhHHhhCCCeEEeecC----C-CCCcccCCccccCCCCCCChhhccccccCCcccchhhhhhhccCccchhhh Confidence 11111114565555556666633 2 46666654321 223331 11233322 233344455677888899 Q ss_pred EEEeccccceeeecceEeeCCcEEEEEEEecCCCc------eEEEEEEEecCC Q lcl|NC_011285. 85 YILLGAHDSVAEVGDWWVDGNNRYTVTELLVANGY------ERKWRVRSVGLE 131 (135) Q Consensus 85 y~lVGa~DAvveIGD~Wteg~~~Y~Vt~v~p~NgY------EvKa~~vs~G~~ 131 (135) ++-+.-+= +.+|=-=.+-...|+|+...|+++| ..||+-.. .+ T Consensus 76 l~WySs~~--~p~gs~V~~~g~~y~V~~~~~Y~~Ysdv~~Y~LK~vs~~--~~ 124 (124) T protein:vir:80 76 MIWFSSQV--LPLKSKVIHKGITYSVEDAIPFTDYSDVTQYGCKAVSVS--AK 124 (124) T ss_pred hhhhhccc--cccccEecCCCeeEEEeeccCccccCCceEEeeeecccc--CC Confidence 88877654 4555555677888999999999996 45654332 22 Done!