Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 16-3 | Genbank acc : NC_011103

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 3) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 110

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|NC_011103.1_cdsid_YP_002117563.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_011103.1_cdsid_YP_002117561.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_011103.1_cdsid_YP_002117560.1	Blast (e-value=1e-152)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	9	lcl\|NC_011103.1_cdsid_YP_002117567.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_011103.1_cdsid_YP_002117569.1	HHsearch (proba=99.96%)
Ne1	12	lcl\|NC_011103.1_cdsid_YP_002117570.1	HHsearch (proba=99.96%)
Tc1	13	lcl\|NC_011103.1_cdsid_YP_002117571.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4511 protein:vir:4456 protein:vir:1328	V ST64B phi-C31	33 % 25 % 25 %
Portal	protein:vir:1326 protein:vir:6240 protein:vir:100150	phi-C31 phi-BT1 phi1026b	26 % 25 % 25 %
TermL	protein:vir:1883 protein:vir:188 protein:vir:6239	HK022 HK97 phi-BT1	54 % 54 % 26 %
Ad1	protein:vir:81159 protein:vir:4512 protein:vir:80320	Geobacillus virus E2 V phi644-2	33 % 27 % 25 %
Hc1	protein:vir:100134 protein:vir:1436 protein:vir:1890	phi1026b phiE125 HK022	29 % 23 % 23 %
Ne1	protein:vir:9930 protein:vir:94654 protein:vir:96121	315.6 mu1/6 37	30 % 30 % 28 %
Tc1	protein:vir:96260 protein:vir:105892 protein:vir:94096	ROSA phiETA3 96	24 % 24 % 24 %