BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011085.2_cdsid_YP_002048670.1 [gene=MmP1_gp49] [protein=DNA maturase B] [protein_id=YP_002048670.1] [location=35555..37315] (586 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 940 0.0 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 939 0.0 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 938 0.0 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 937 0.0 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 920 0.0 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 746 0.0 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 746 0.0 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 688 0.0 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 445 e-127 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 423 e-120 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 293 3e-81 gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 292 6e-81 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 289 7e-80 gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 271 2e-74 gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: put... 268 9e-74 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 266 6e-73 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 176 8e-46 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 63 8e-12 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 59 1e-10 gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hyp... 48 4e-07 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 39 2e-04 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 38 3e-04 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 38 4e-04 gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfW... 36 0.001 gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 34 0.004 gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hyp... 34 0.005 gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp... 33 0.010 gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 ... 33 0.010 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 32 0.015 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 32 0.016 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 31 0.038 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 28 0.28 gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unkn... 27 0.48 gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: put... 27 0.52 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 27 0.54 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 27 0.55 gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: put... 27 0.93 gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 26 1.1 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 25 1.9 gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp6... 25 3.5 gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: ge... 24 5.6 gi|17806|lcl|protein:vir:2437 Length: 198 # NCBI annotation: maj... 24 6.3 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/586 (75%), Positives = 504/586 (86%) Query: 1 MSNVRKQNQSNLKTLKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFR 60 MS +N + LK DF+AFLFVLWKALNLP PT+CQIDMA+ +AN NKKFILQAFR Sbjct: 1 MSTQSNRNALVVAQLKGDFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFR 60 Query: 61 GIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQ 120 GIGKSFI CA+VVW LW +PQLK+LIVSASKERADANSIFIKNII+LLPFLSE+KPR GQ Sbjct: 61 GIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLSELKPRPGQ 120 Query: 121 RDSVISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQ 180 RDSVISFDVG A PDHSPSVKSVGITGQLTGSRADII+ADDVEIPSNSAT G REKLWT Sbjct: 121 RDSVISFDVGPANPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTL 180 Query: 181 VQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDR 240 VQEFAALLKPL +SRVIYLGTPQTEMTLYKELEDNRGY+TIIWPA YPR +EE ++Y R Sbjct: 181 VQEFAALLKPLPSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQR 240 Query: 241 LAPMLKAEYDETPELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYP 300 LAPML+AEYDE PE LAGTPTDPVRFD++DL ERELEYGKA FTLQFMLNPNLSDA KYP Sbjct: 241 LAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEKYP 300 Query: 301 LRIRDAIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERI 360 LR+RDAIV D E AP+ YQWLPN QN+ DLPNVGLKGDD+H +H SNN+ +Y ++I Sbjct: 301 LRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQKI 360 Query: 361 LIIDPSGRGKDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFE 420 L+IDPSGRGKDETGYAVL+ LNGYIYLMEAGG RDGYSDKTLE LAK AK+W V TVV+E Sbjct: 361 LVIDPSGRGKDETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQTVVYE 420 Query: 421 SNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDD 480 SNFGDGMFGKVFSP+LLKHH CA+EEIRA+G KE+RICDTLEPV+QTHRLVI+D V D Sbjct: 421 SNFGDGMFGKVFSPILLKHHNCAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDEVIRAD 480 Query: 481 YQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQK 540 YQSARD +GKH V+YSLFYQMTR+ RE+GA+AHDDRLDALALGIEYL+ M+LDS K + Sbjct: 481 YQSARDVDGKHDVKYSLFYQMTRITREKGALAHDDRLDALALGIEYLRESMQLDSVKVEG 540 Query: 541 ELVAAFIEEHMNKETISMANIHTMQTNGMNIYYEDDDMVGSKFIQF 586 E++A F+EEHM + T++ +I M G+++Y EDD+ G+ FI++ Sbjct: 541 EVLADFLEEHMMRPTVAATHIIEMSVGGVDVYSEDDEGYGTSFIEW 586 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/586 (75%), Positives = 505/586 (86%) Query: 1 MSNVRKQNQSNLKTLKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFR 60 MS +N + LK DF+AFLFVLWKALNLP PT+CQIDMA+ +AN NKKFILQAFR Sbjct: 1 MSTQSNRNALVVAQLKGDFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFR 60 Query: 61 GIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQ 120 GIGKSFI CA+VVW LW +PQLK+LIVSASKERADANSIFIKNII+LLPFL+E+KPR GQ Sbjct: 61 GIGKSFITCAFVVWTLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQ 120 Query: 121 RDSVISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQ 180 RDSVISFDVG A PDHSPSVKSVGITGQLTGSRADII+ADDVEIPSNSATQG REKLWT Sbjct: 121 RDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTL 180 Query: 181 VQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDR 240 VQEFAALLKPL TSRVIYLGTPQTEMTLYKELEDNRGY+TIIWPA YPR++EE ++YG+R Sbjct: 181 VQEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYGER 240 Query: 241 LAPMLKAEYDETPELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYP 300 LAPML+ E+++ E+L G PTDPVRFD EDL ERELEYGKA FTLQFMLNPNLSDA KYP Sbjct: 241 LAPMLREEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYP 300 Query: 301 LRIRDAIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERI 360 LR+RDAIVC D E AP+ YQWLPN QN +LPNVGLKGDDIH +H+ S NT +Y +RI Sbjct: 301 LRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQYQQRI 360 Query: 361 LIIDPSGRGKDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFE 420 L+IDPSGRGKDETGYAVLF LNGYIYLMEAGG RDGYSDKTLE+LAK AK+WKV TVVFE Sbjct: 361 LVIDPSGRGKDETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFE 420 Query: 421 SNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDD 480 SNFGDGMFGKVFSPVLLKHH ALEEIRA+G KE+RICDTLEPVL THRLVI+D V +D Sbjct: 421 SNFGDGMFGKVFSPVLLKHHAAALEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIRED 480 Query: 481 YQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQK 540 YQ+ARD +GKH V+YSLFYQ+TRMARE+GAVAHDDRLDALALG+E+L++ MELD+ K + Sbjct: 481 YQTARDADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDAVKVEA 540 Query: 541 ELVAAFIEEHMNKETISMANIHTMQTNGMNIYYEDDDMVGSKFIQF 586 E++ AF+EEHM S ++ T +GM +Y+EDDD+ G +FI + Sbjct: 541 EVLEAFLEEHMEHPIHSAGHVVTAMVDGMELYWEDDDVNGDRFINW 586 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/586 (75%), Positives = 504/586 (86%) Query: 1 MSNVRKQNQSNLKTLKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFR 60 MS +N + LK DF+AFLFVLWKALNLP PT+CQIDMA+ +AN NKKFILQAFR Sbjct: 1 MSTQSNRNALVVAQLKGDFVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFR 60 Query: 61 GIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQ 120 GIGKSFI CA+VVW LW +PQLK+LIVSASKERADANSIFIKNII+LLPFL+E+KPR GQ Sbjct: 61 GIGKSFITCAFVVWSLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQ 120 Query: 121 RDSVISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQ 180 RDSVISFDVG A PDHSPSVKSVGITGQLTGSRADII+ADDVEIPSNSAT G REKLWT Sbjct: 121 RDSVISFDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTL 180 Query: 181 VQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDR 240 VQEFAALLKPL +SRVIYLGTPQTEMTLYKELEDNRGY+TIIWPA YPR +EE ++Y R Sbjct: 181 VQEFAALLKPLTSSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQR 240 Query: 241 LAPMLKAEYDETPELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYP 300 LAPML+AEYDE PE LAGTPTDPVRFD++DL ERELEYGKA FTLQFMLNPNLSDA KYP Sbjct: 241 LAPMLRAEYDENPEALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEKYP 300 Query: 301 LRIRDAIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERI 360 LR+RDAIV D E AP+ YQWLPN QN+ DLPNVGLKGDD+H +H SNN+ +Y ++I Sbjct: 301 LRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQKI 360 Query: 361 LIIDPSGRGKDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFE 420 L+IDPSGRGKDETGYAVL+ LNGYIYLMEAGG RDGYSDKTLE LAK AK+W V TVV+E Sbjct: 361 LVIDPSGRGKDETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQTVVYE 420 Query: 421 SNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDD 480 SNFGDGMFGKVFSP+LLKHH CA+EEIRA+G KE+RICDTLEPV+QTHRLVI+D V D Sbjct: 421 SNFGDGMFGKVFSPILLKHHNCAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDEVIRAD 480 Query: 481 YQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQK 540 YQSARD +GK+ V+YSLFYQMTR+ RE+GA+AHDDRLDALALGIEYL+ M+LDS K + Sbjct: 481 YQSARDVDGKYDVKYSLFYQMTRITREKGALAHDDRLDALALGIEYLRESMQLDSVKVEG 540 Query: 541 ELVAAFIEEHMNKETISMANIHTMQTNGMNIYYEDDDMVGSKFIQF 586 E++A F+EEHM + T+S +I M G+++Y EDD+ G+ FI++ Sbjct: 541 EVLADFLEEHMMRPTVSATHIIEMSVGGVDVYSEDDEGYGTSFIEW 586 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/580 (76%), Positives = 503/580 (86%) Query: 7 QNQSNLKTLKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFRGIGKSF 66 +N + LK DF+AFLFVLWKAL LPPPT+CQIDMAR +AN NKKFILQAFRGIGKSF Sbjct: 8 RNALIIAQLKGDFVAFLFVLWKALALPPPTKCQIDMARCLANGDNKKFILQAFRGIGKSF 67 Query: 67 ILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQRDSVIS 126 I CA+VVW LW +PQLK+LIVSASKERADANSIFIKNII+LLPFL+E+KPR GQRDSVIS Sbjct: 68 ITCAFVVWTLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQRDSVIS 127 Query: 127 FDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFAA 186 FDVG A PDHSPSVKSVGITGQLTGSRADII+ADDVEIPSNSATQG REKLWT VQEFAA Sbjct: 128 FDVGPAKPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTLVQEFAA 187 Query: 187 LLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDRLAPMLK 246 LLKPL TSRVIYLGTPQTEMTLYKELEDNRGY+TIIWPA YPR++EE ++YGDRLAPML+ Sbjct: 188 LLKPLPTSRVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYGDRLAPMLR 247 Query: 247 AEYDETPELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYPLRIRDA 306 E+++ E+L G PTDPVRFD EDL ERELEYGKA FTLQFMLNPNLSDA KYPLR+RDA Sbjct: 248 EEFNDGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLRDA 307 Query: 307 IVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERILIIDPS 366 IVC D E AP+ YQWLPN QN +LPNVGLKGDDIH +H+ S NT +Y +RIL+IDPS Sbjct: 308 IVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQYQQRILVIDPS 367 Query: 367 GRGKDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFESNFGDG 426 GRGKDETGYAVLF LNGYIYLMEAGG RDGYSDKTLE+LAK AK+WKV TVVFESNFGDG Sbjct: 368 GRGKDETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFESNFGDG 427 Query: 427 MFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDDYQSARD 486 MFGKVFSPVLLKHH A+EEIRA+G KE+RICDTLEPVL THRLVI+D V +DYQ+ARD Sbjct: 428 MFGKVFSPVLLKHHAAAMEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIREDYQTARD 487 Query: 487 HEGKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQKELVAAF 546 +GKH V+YSLFYQ+TRMARE+GAVAHDDRLDALALG+E+L++ MELD+ K + E++ AF Sbjct: 488 ADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDAVKVEAEVLEAF 547 Query: 547 IEEHMNKETISMANIHTMQTNGMNIYYEDDDMVGSKFIQF 586 +EEHM S ++ T +GM +Y+EDDD+ ++FI + Sbjct: 548 LEEHMEHPIHSAGHVVTSMVDGMELYWEDDDVNSNRFIDW 587 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/586 (74%), Positives = 498/586 (84%), Gaps = 1/586 (0%) Query: 1 MSNVRKQNQSNLKTLKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFR 60 MSN +N + LK DF+AFLFVLWKALNLP PT+CQIDMART+A+ +KKFILQAFR Sbjct: 1 MSNQANKNALIVAQLKGDFVAFLFVLWKALNLPKPTKCQIDMARTLADGDHKKFILQAFR 60 Query: 61 GIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQ 120 GIGKSFI CA+VVW+LW +PQLKVLIVSASKERADANSIFIKNII+LLPFL+E+KPR GQ Sbjct: 61 GIGKSFITCAFVVWVLWRDPQLKVLIVSASKERADANSIFIKNIIDLLPFLAELKPRPGQ 120 Query: 121 RDSVISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQ 180 RDSVISFDVGLA PDHSPSVKSVGITGQLTGSRADII+ADDVE+P NS+T REKLWT Sbjct: 121 RDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTSSAREKLWTL 180 Query: 181 VQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDR 240 V EFAALLKPL TSRVIYLGTPQTEMTLYKELEDN+GYST+IWPA YPRN EA++YGDR Sbjct: 181 VTEFAALLKPLPTSRVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQYPRNDAEALYYGDR 240 Query: 241 LAPMLKAEYDETPELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYP 300 LAPMLKAEYDE ELL G PTDPVRFD +DL ERELEYGKA +TLQFMLNPNLSDA KYP Sbjct: 241 LAPMLKAEYDEGFELLRGQPTDPVRFDTDDLRERELEYGKAGYTLQFMLNPNLSDAEKYP 300 Query: 301 LRIRDAIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERI 360 LR+RDAIVC D E APLSYQWLPN QN +LPNVGLKGDDIH FHT S+ TA+Y +I Sbjct: 301 LRLRDAIVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHTCSSRTAEYQSKI 360 Query: 361 LIIDPSGRGKDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFE 420 L+IDPSGRGKDETGYAVL++LNGYIYLME GG R GY D TLE LAK AK+WKV TVV E Sbjct: 361 LVIDPSGRGKDETGYAVLYSLNGYIYLMEVGGFRGGYDDATLEKLAKKAKQWKVQTVVHE 420 Query: 421 SNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDD 480 SNFGDGMFGK+FSPVLLKHH+ ALEEIRAKG KE+RICDT+EP++ +H+L+I+D V +D Sbjct: 421 SNFGDGMFGKIFSPVLLKHHKAALEEIRAKGMKEMRICDTIEPLMGSHKLIIRDEVIRED 480 Query: 481 YQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQK 540 YQ++RD +GKH V+YS FYQMTRM RERGAVAHDDRLDA+ALGIE+L+ M +DS ++ Sbjct: 481 YQTSRDLDGKHDVRYSAFYQMTRMTRERGAVAHDDRLDAIALGIEWLREGMLVDSKIGEE 540 Query: 541 ELVAAFIEEHMNKETISMANIHTMQTNGMNIYYEDDDMVGSKFIQF 586 E+ F+E HM K+TI IH++ G++IYYED++ GS FI + Sbjct: 541 EMTLEFLEAHMEKQTIGGDQIHSLDVGGVDIYYEDEEG-GSSFIDW 585 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/573 (61%), Positives = 440/573 (76%), Gaps = 4/573 (0%) Query: 15 LKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFRGIGKSFILCAYVVW 74 +KADF+ FLFVLWKAL+LP PTRCQIDMA+ ++ N++FILQAFRGIGKSFI CA+VVW Sbjct: 5 MKADFVFFLFVLWKALSLPVPTRCQIDMAKKLSAGDNRRFILQAFRGIGKSFITCAFVVW 64 Query: 75 LLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQRDSVISFDVGLATP 134 LWNNP LK +IVSASKERADANSIFIK II+L+P L E+KP+QGQRD+VISFDVG A P Sbjct: 65 KLWNNPDLKFMIVSASKERADANSIFIKRIIDLMPQLKELKPKQGQRDAVISFDVGPAKP 124 Query: 135 DHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFAALLKPLDTS 194 DHSPSVKSVGITGQLTGSRADI++ADDVE+P+NSATQ R++L V+EF A+LKP T Sbjct: 125 DHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDRLSELVKEFDAILKPGGT- 183 Query: 195 RVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDRLAPMLKAEYDETPE 254 +IYLGTPQ EMTLY+ELE RGY+T IWPA YPR++++ YGDRLAPML+AE +E PE Sbjct: 184 -IIYLGTPQNEMTLYRELE-GRGYTTTIWPARYPRDRKDWQSYGDRLAPMLQAELEEDPE 241 Query: 255 LLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYPLRIRDAIVCPCDTE 314 PTD VRFD DL EREL YGKA F LQFMLNPNLSDA KYPL++RD IV D Sbjct: 242 SFYWRPTDEVRFDDTDLKERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDLIVADLDPA 301 Query: 315 FAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERILIIDPSGRGKDETG 374 +P+ YQWLPN QN R D+PNVGL GD H + T + + YT++IL+IDPSGRGKDETG Sbjct: 302 SSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVGSAFSSYTQKILVIDPSGRGKDETG 361 Query: 375 YAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFESNFGDGMFGKVFSP 434 YAVL+ LNGYI+ ME GGMR GY D TLEALAK+ +KWKVN V E NFGDGM+ ++F P Sbjct: 362 YAVLYQLNGYIFAMEVGGMRGGYEDSTLEALAKIGRKWKVNEYVIEGNFGDGMYLELFKP 421 Query: 435 VLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDDYQSARDHEGKHSVQ 494 V + H A+ E+++KGQKE+RICD LEP++ +HRL++ V DYQSA D +G + Sbjct: 422 VAARIHPAAVTEVKSKGQKELRICDVLEPIMGSHRLIVNAAAIVQDYQSASDKDGVRNPI 481 Query: 495 YSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQKELVAAFIEEHMNKE 554 YSLFYQMTR++RERGA+AHDDRLDALA+G+++ M D++K ++E+ ++EE M Sbjct: 482 YSLFYQMTRISRERGALAHDDRLDALAIGVQFFVESMAKDANKGEREVTEEWLEEQMENP 541 Query: 555 TISMANIHT-MQTNGMNIYYEDDDMVGSKFIQF 586 +IHT NG+ + ++ D++ ++ F Sbjct: 542 RKGFESIHTEFWDNGVRVTHDTDELGLGSYVTF 574 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/589 (61%), Positives = 438/589 (74%), Gaps = 6/589 (1%) Query: 1 MSNVRKQNQSNLKTLKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFR 60 MS ++Q L +K DF+ FL VLW+ALNLP PTRCQ DMAR +A ++FILQAFR Sbjct: 1 MSKYLTKDQRRLLAMKNDFVLFLMVLWRALNLPEPTRCQKDMARKLAAGDERRFILQAFR 60 Query: 61 GIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQ 120 GIGKSFI CA+VVW LWNNPQLK +IVSASKERADANSIFIK II+LLPFL E+KPR Q Sbjct: 61 GIGKSFITCAFVVWKLWNNPQLKFMIVSASKERADANSIFIKRIIDLLPFLHELKPRPEQ 120 Query: 121 RDSVISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQ 180 RDSVISFDVGLA PDHSPSVKSVGITGQLTGSRADI++ADDVE+P+NSATQ R++L Sbjct: 121 RDSVISFDVGLAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDRLGEL 180 Query: 181 VQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDR 240 V+EF A+LKP T +IYLGTPQ EMTLY+ELE NRGY T IWPA YP++ + YG+R Sbjct: 181 VKEFDAILKPNGT--IIYLGTPQCEMTLYRELE-NRGYKTTIWPARYPKDMNDLETYGNR 237 Query: 241 LAPMLKAEYDETPELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYP 300 LAPMLK E E PE PTDPVRFD EDL EREL YGKA F LQFMLNPNLSDA KYP Sbjct: 238 LAPMLKDELMENPEAYWWQPTDPVRFDDEDLRERELSYGKAGFALQFMLNPNLSDAEKYP 297 Query: 301 LRIRDAIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERI 360 L++RD IV + + APL+Y WLPN QN+ +++P VGLKGD H + A A YT +I Sbjct: 298 LKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVGLKGDTYHRYDVADKRQASYTSKI 357 Query: 361 LIIDPSGRGKDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFE 420 + IDPSGRGKDETGY VL+ LNGYIYLME GG R GY D TLEALAK+AK+W VN V+ E Sbjct: 358 MAIDPSGRGKDETGYCVLYFLNGYIYLMETGGFRGGYEDSTLEALAKVAKRWNVNEVLCE 417 Query: 421 SNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDD 480 NFGDGMF K+FSPVL + H+CAL E ++ GQKE+RI DTLEPV+ HR+V+ ++ D Sbjct: 418 GNFGDGMFLKIFSPVLNRVHRCALTETKSTGQKEMRIADTLEPVMGAHRIVVMESAIQKD 477 Query: 481 YQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQK 540 YQ+AR+ +G H ++YS+FYQ+TR+ RERGA+AHDDRLDA A+G+ Y +E DS Sbjct: 478 YQTARNVDGTHDIKYSMFYQLTRLTRERGALAHDDRLDAFAIGVAYFVEMLEKDSQAGAD 537 Query: 541 ELVAAFIEEHMNKETISMANIHTMQTNG-MNIYYEDD--DMVGSKFIQF 586 + A ++EE + K+ + H G + +Y+EDD D G F Sbjct: 538 DTTAEWLEEMLGKDALQADQSHVHILKGDVEVYFEDDPNDFSGLNLCGF 586 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/572 (58%), Positives = 421/572 (73%), Gaps = 5/572 (0%) Query: 6 KQNQSNLKTLKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFRGIGKS 65 + +L+ +K F+AFLFVLW+ALNLP PT+CQIDMA+ ++ ++FILQAFRGIGKS Sbjct: 5 RNGADDLELIKRSFVAFLFVLWRALNLPKPTKCQIDMAKKLSAGDERRFILQAFRGIGKS 64 Query: 66 FILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQRDSVI 125 FI CA+VVW LWNNP LK +IVSASKERADANS+FIK II+LLPFL E+KP GQRDS + Sbjct: 65 FITCAFVVWKLWNNPDLKFMIVSASKERADANSVFIKRIIDLLPFLHELKPGPGQRDSSL 124 Query: 126 SFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFA 185 +FDVG A PDHSPSVKSVGITGQLTGSRADI++ADDVE+P+NSATQ R+ L V+EF Sbjct: 125 AFDVGPAKPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQTARDHLGELVKEFD 184 Query: 186 ALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDRLAPML 245 A+LKP T +IYLGTPQTEMTLY+ELE RGY T IWPA YP+++ + YG RLAPML Sbjct: 185 AILKPGGT--IIYLGTPQTEMTLYRELE-GRGYVTTIWPARYPKDQADWDSYGPRLAPML 241 Query: 246 KAEYDETPELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYPLRIRD 305 AE L PTD VRFD +DL EREL YGK F LQFMLNPNLSD KYPL++RD Sbjct: 242 AAELQADGSLFW-APTDEVRFDDKDLRERELSYGKGGFALQFMLNPNLSDMEKYPLKLRD 300 Query: 306 AIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERILIIDP 365 IV + P + W+PNA N + +P VGLKGD H + + TA Y ++IL+IDP Sbjct: 301 FIVGTFAQDKGPTTLIWMPNAANECKGVPVVGLKGDRFHRYESVGQATASYAQKILVIDP 360 Query: 366 SGRGKDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFESNFGD 425 SGRGKDETGYAVL+ LNGYI+LM+AGG R GY D L+ALA +AK KVN +V E NFGD Sbjct: 361 SGRGKDETGYAVLYQLNGYIFLMDAGGFRGGYEDTVLQALANIAKIHKVNEIVVEGNFGD 420 Query: 426 GMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDDYQSAR 485 GM+ K+ +PV+ CA+ E+++KGQKE+RICD LEPVL +H+LVI++++ DY++A Sbjct: 421 GMYIKLLAPVVTATFPCAITEVKSKGQKELRICDVLEPVLGSHKLVIQESLIEKDYRTAL 480 Query: 486 DHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQKELVAA 545 + +G YSL YQ+TR+ RERG++AHDDRLDALA+G+++ +E DS + E++ Sbjct: 481 NADGTTDTSYSLLYQLTRITRERGSLAHDDRLDALAIGVQFFTEALERDSKVGESEMLQE 540 Query: 546 FIEEHMNKETISMANIHTMQ-TNGMNIYYEDD 576 F+E HM + + M + G++I YEDD Sbjct: 541 FLESHMEDALMGHDRLLEMSISEGVSIQYEDD 572 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 445 bits (1144), Expect = e-127, Method: Compositional matrix adjust. Identities = 236/519 (45%), Positives = 341/519 (65%), Gaps = 20/519 (3%) Query: 15 LKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFRGIGKSFILCAYVVW 74 ++ DF FL ++W+ L+LP PTR Q+ +A + + K+ + AFRG+GKS+I A+V+W Sbjct: 10 MRGDFKFFLSLVWRELDLPKPTRAQLAIADYLQH-GPKRLQISAFRGVGKSWITAAFVLW 68 Query: 75 LLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQG-QRDSVISFDVGLAT 133 +L+ +P K++++SASKERAD SIF + +I + +LS ++PR QR S ISFDVG A Sbjct: 69 VLFVDPDRKIMVISASKERADNFSIFCQKLILDIEWLSHLRPRDSDQRWSRISFDVGPAK 128 Query: 134 PDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFAALLKPLDT 193 P +PSVKSVGITGQ+TGSRA +++ DDVE+P+NSAT REKL V E ++L P D Sbjct: 129 PHQAPSVKSVGITGQMTGSRAHLMVFDDVEVPANSATDMQREKLLQLVSESESILVPDDD 188 Query: 194 SRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDRLAPMLKAEYDETP 253 +R+++LGTPQ+ T+Y++L + R Y +WPA YPR+ + Y LAP L A+ ++ P Sbjct: 189 ARIMFLGTPQSTFTIYRKLAE-RSYRPFVWPARYPRDLSK---YEGLLAPQLVADLEKDP 244 Query: 254 ELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYPLRIRDAIVCPCDT 313 E L PTD RF++ +L+ERE G+++F LQFML+ +LSDA K+PL+ +D IV P Sbjct: 245 E-LTWKPTD-TRFNELNLMERESAMGRSNFMLQFMLDTSLSDAEKFPLKFQDLIVTPLGA 302 Query: 314 EFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERILIIDPSGRGKDET 373 E A +Y W + + +R++L VGL GD +G Y+E I+ +DPSGRG DET Sbjct: 303 ECAE-AYAWSADPRYMRKELNPVGLPGDRFYGPMYIDEGIVPYSETIVSVDPSGRGTDET 361 Query: 374 GYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFESNFGDGMFGKVFS 433 VL NGYI++ + RDGYSD+TL + +L K++K + ++ ESNFGDGM ++F Sbjct: 362 VAVVLSQANGYIFVRDMKAFRDGYSDETLSDIVRLGKRYKASKLLVESNFGDGMITELF- 420 Query: 434 PVLLKHHQCAL------EEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDDYQSARDH 487 K H + EE+RA +KE RI +TLEPV+ H+L+I V+ DY S D Sbjct: 421 ----KRHISQMGGGMDTEEVRASARKEERIIETLEPVMNQHKLIIDPKVWEYDYSSNPDA 476 Query: 488 EGKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEY 526 + ++Y L YQM+RM RE+GAV HDDR+DAL+ G++Y Sbjct: 477 APEKRLEYMLGYQMSRMCREKGAVKHDDRVDALSQGVQY 515 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 423 bits (1088), Expect = e-120, Method: Compositional matrix adjust. Identities = 237/527 (44%), Positives = 330/527 (62%), Gaps = 10/527 (1%) Query: 11 NLKTLKADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFRGIGKSFILCA 70 LK L+ DF FL LW L+LP PTR Q +A + + K+ +QAFRG+GKS+I A Sbjct: 4 TLKALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQS-GPKRLQIQAFRGVGKSWITGA 62 Query: 71 YVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQ-RDSVISFDV 129 +V+W L+N+ + K++I+SASKERAD SIF++ +I P+L ++P+ R S ISFDV Sbjct: 63 FVLWTLFNDAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRISFDV 122 Query: 130 GLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFAALLK 189 L +P +PSVKSVGITGQLTGSRAD+++ DD+E+P NS T+ REKL E ++L Sbjct: 123 -LCSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAESILT 181 Query: 190 PLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDRLAPMLKAEY 249 P D SR++YLGTPQT T+Y++L + R Y +WPA YP++ Y +AP L+ + Sbjct: 182 PKDDSRIMYLGTPQTTFTVYRKLAE-RAYRPFVWPARYPKD---ITPYEGLIAPQLQEDI 237 Query: 250 DETPELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYPLRIRDAIVC 309 D E +GT TDP RFD +DL +RE G+++F LQFML+ LSDA K+PL++ D ++ Sbjct: 238 DNGAE--SGTVTDPDRFDDDDLQQRESAMGRSNFMLQFMLDTTLSDAEKFPLKMADLVIT 295 Query: 310 PCDTEFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKYTERILIIDPSGRG 369 + AP + W + QN+ +D P VGL GD + Y E I +DPSGRG Sbjct: 296 SVNPTEAPDNVIWCSDPQNIIKDAPTVGLPGDYFYSPMQLQGEWTPYQETICSVDPSGRG 355 Query: 370 KDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFESNFGDGMFG 429 DET L NG++YL E RDGYSD TL + K KK+ T+V E+NFGDG+ Sbjct: 356 TDETAACYLSQKNGFLYLHEMRAYRDGYSDATLLDILKGCKKYNATTLVVETNFGDGIVS 415 Query: 430 KVFSPVLLKHHQCA-LEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDDYQSARDHE 488 ++F L + Q ++E+RA +KE RI D+LEPVL HRL++ V DY S +D Sbjct: 416 ELFKKHLQQTKQAIFVDEVRANVRKEDRIIDSLEPVLNQHRLIVDRGVIDWDYSSNKDCP 475 Query: 489 GKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDS 535 + + Y LFYQM+RM R + AV HDDRLD LA G++Y + + + + Sbjct: 476 PESRLLYMLFYQMSRMCRMKFAVKHDDRLDCLAQGVKYFTDSLSISA 522 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 293 bits (750), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 191/538 (35%), Positives = 280/538 (52%), Gaps = 21/538 (3%) Query: 33 PPPTRCQIDMARTVANPKNKKFILQAFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKE 92 P R Q D+ + + NK +++A RG K+ I Y V+ + + P +++IVS + + Sbjct: 48 PDLNRVQADILKFLFG-GNKYRMVEAQRGQAKTTIAAIYAVFRIIHEPHKRIMIVSQTAK 106 Query: 93 RADANSIFIKNIIELLPFLSEMKP--RQGQRDSVISFDV--GLATPDHSPSVKSVGITGQ 148 RA+ + ++ I L FL M P G + S+ F++ L D SPSV I Sbjct: 107 RAEEIAGWVIKIFRGLDFLEFMLPDIYAGDKASIKGFEIHYTLRGSDKSPSVACYSIEAG 166 Query: 149 LTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFAALLKPLDTSRVIYLGTPQTEMTL 208 + G+RADIILADDVE NS T R L +EF ++ + D +IYLGTPQ+ ++ Sbjct: 167 MQGARADIILADDVESLQNSRTAAGRALLEDLTKEFESINQFGD---IIYLGTPQSVNSI 223 Query: 209 YKELEDNRGYSTIIWPAYYPRNKEEAMHYGDRLAPMLKAEYDETPELLAG--------TP 260 Y L RGY IWP YP ++EA YGD LAPM++ + + P L +G P Sbjct: 224 YNNLP-ARGYQIRIWPGRYPTLEQEAC-YGDFLAPMIRQDMIDDPSLRSGYGIDGTQGAP 281 Query: 261 TDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYPLRIRDAIVCPCDTEFAPLSY 320 T P +D E L+E+E+ G A F LQFMLN L DA +YPLR+ I+ T+ P Sbjct: 282 TCPEMYDDEKLIEKEISQGTAKFQLQFMLNTRLMDADRYPLRLNQLILMSFGTDVVPEMP 341 Query: 321 QWLPNAQNVRRDLPNVGLKGDD-IHGFHTASNNTAKYTERILIIDPSGRGK--DETGYAV 377 W ++ N+ D P G K D ++ R++ IDP+G GK DETG A+ Sbjct: 342 TWSNDSVNLISDAPRFGNKPTDYLYRPVPRPYEWRPIQRRLMYIDPAGGGKNGDETGVAI 401 Query: 378 LFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFESNFGDGMFGKVFSPVLL 437 +F L +IY+ + G+ GYS+ L + + AK+ +V V E NFG G F V P Sbjct: 402 VFLLGTFIYVYKVFGVPGGYSESALSRIVREAKQAEVKEVFIEKNFGHGAFEAVIKPYFE 461 Query: 438 KHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDDYQSARDHEGKHSVQYSL 497 + L+E A GQKE RI +TLEP++ HR++ + D S + + + + YSL Sbjct: 462 REWPAELKEDYATGQKEARIIETLEPLMSAHRIIFNAEMIKQDIDSVQHYPLEVRMSYSL 521 Query: 498 FYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQKELVAAFIEEHMNKET 555 F QM+ + E+G + HDDRLDAL I L + ++ D L A + E++ T Sbjct: 522 FAQMSNITLEKGCLRHDDRLDALYGAIRQLTSQIDYDEANRINRLRAKEMREYLEMMT 579 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 292 bits (748), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 182/524 (34%), Positives = 276/524 (52%), Gaps = 25/524 (4%) Query: 33 PPPTRCQIDMARTVANPKNKKFILQAFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKE 92 P R Q D+ R + K + + +A RG K+ I Y V+ + + P ++LI S + + Sbjct: 48 PHLNRIQADILRFMFTGKKYRMV-EAQRGQAKTTIAAIYAVFCIIHRPHFRILISSQTSK 106 Query: 93 RADANSIFIKNIIELLPFLSEMKP--RQGQRDSVISFDV--GLATPDHSPSVKSVGITGQ 148 RA+ + ++ I L L M P G + S+ F++ L SPSV I G Sbjct: 107 RAEEIAGWVIKIFRGLDILEFMMPDIYSGDKASIRGFEIHYTLRGSGASPSVACYSIEGS 166 Query: 149 LTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFAALLKPLDTSRVIYLGTPQTEMTL 208 + G+RAD+I+ADDVE NSAT R KL +EF ++ + T ++YLGTPQ+ ++ Sbjct: 167 MQGARADLIIADDVESLQNSATAAGRVKLEEATKEFESINQ---TGDILYLGTPQSINSI 223 Query: 209 YKELEDNRGYSTIIWPAYYPRNKEEAMHYGDRLAPMLKAEYDETPEL--------LAGTP 260 Y L +RGY IWP YP E+ + YGD LAP++ + + PEL L G P Sbjct: 224 YNNL-PSRGYQLRIWPGRYP-TVEQQVSYGDFLAPLIIEDMEANPELRRGGGITRLQGQP 281 Query: 261 TDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYPLRIRDAIVCPCDTEFAPLSY 320 T P ++ E L+E+E+ G A F LQFMLN LSD+ ++PL++ + + P Sbjct: 282 TCPEMYNDEALIEKEISQGTAKFQLQFMLNTRLSDSERFPLKLSSIMFGNFGVDKVPEMP 341 Query: 321 QWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAKY---TERILIIDPSGRGK--DETGY 375 ++ N ++ G K D F+ + ++ T RI+ IDP+G G+ DETG Sbjct: 342 LHSTDSINEIKEAQRPGNKSTD--RFYRMAPRPYEWKPATRRIMYIDPAGGGQNGDETGV 399 Query: 376 AVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFESNFGDGMFGKVFSPV 435 A++F L YIY+ + G++ GY D LE + AK+ V E NFG G F + P Sbjct: 400 AIVFLLGTYIYVYKCFGVKGGYEDADLEQIVMAAKEANCKEVFVEKNFGHGAFQAIIKPF 459 Query: 436 LLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKDNVFVDDYQSARDHEGKHSVQY 495 + H C L+E A GQKE RI DTLEP+L HRLV + +D ++ + + + Y Sbjct: 460 FERLHPCELQEDYATGQKEERIIDTLEPLLSAHRLVFNTEIIFEDNKAIQKYALEKQASY 519 Query: 496 SLFYQMTRMARERGAVAHDDRLDALALGIEYLKNWMELDSDKNQ 539 SLF+Q+ + R++G++ HDDR+DAL + L ++ D Q Sbjct: 520 SLFHQIANITRDKGSLRHDDRIDALYGAVRQLTTDIDYDEMAKQ 563 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 289 bits (739), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 181/499 (36%), Positives = 267/499 (53%), Gaps = 20/499 (4%) Query: 51 NKKFILQAFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPF 110 +K +++A RGI K+ + Y V+ + + P ++++VS + +RA+ + ++ I L F Sbjct: 65 HKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFRGLDF 124 Query: 111 LSEMKP--RQGQRDSVISFDV--GLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPS 166 L M P G R SV +F++ L D SPSV I + G+RADIILADDVE Sbjct: 125 LEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADIILADDVESMQ 184 Query: 167 NSATQGTREKLWTQVQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAY 226 N+ T R L +EF ++ + D +IYLGTPQ ++Y L RGYS IW A Sbjct: 185 NARTAAGRALLEELTKEFESINQFGD---IIYLGTPQNVNSIYNNLP-ARGYSVRIWTAR 240 Query: 227 YPRNKEEAMHYGDRLAPMLKAEYDETPELLAG--------TPTDPVRFDKEDLLERELEY 278 YP ++E YGD LAPM+ + + P L +G P P +D E L+E+E+ Sbjct: 241 YPSVEQEQC-YGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDEVLIEKEISQ 299 Query: 279 GKADFTLQFMLNPNLSDAAKYPLRIRDAIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGL 338 G A F LQFMLN + DA +YPLR+ + I TE P+ W ++ N+ D P G Sbjct: 300 GAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSINIIGDAPKYGN 359 Query: 339 KGDDIHGFHTAS-NNTAKYTERILIIDPSGRGK--DETGYAVLFALNGYIYLMEAGGMRD 395 K D A + +I+ IDP+G GK DETG A++F +IY+ + G+ Sbjct: 360 KPTDFMYRPVARPYEWGAVSRKIMYIDPAGGGKNGDETGVAIVFLHGTFIYVYQCFGVPG 419 Query: 396 GYSDKTLEALAKLAKKWKVNTVVFESNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEV 455 GY + +L + + AK+ V V E NFG G F V P + LEE A GQKE+ Sbjct: 420 GYRESSLNRIVQAAKQAGVKEVFIEKNFGHGAFEAVIKPYFEREWPVTLEEDYATGQKEL 479 Query: 456 RICDTLEPVLQTHRLVIKDNVFVDDYQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDD 515 RI +TLEP++ HRL+ + D++S + + + + YSLF QM+ + E+ ++ HDD Sbjct: 480 RIIETLEPLMAAHRLIFNAEMVKSDFESVQHYPLELRMSYSLFNQMSNITIEKNSLRHDD 539 Query: 516 RLDALALGIEYLKNWMELD 534 RLDAL I L + ++ D Sbjct: 540 RLDALYGAIRQLTSQIDYD 558 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 271 bits (693), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 176/523 (33%), Positives = 274/523 (52%), Gaps = 28/523 (5%) Query: 52 KKFILQAFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFL 111 ++ ++ A RG KS I C + +W L +P +V++VS ++++A+ N + +I P L Sbjct: 51 QRSMVAAQRGEAKSTIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLL 110 Query: 112 SEMKPRQ--GQRDSVISFDV--GLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSN 167 + P + G R SV+ FDV L D S SV +GIT L G R D+++ DD+E N Sbjct: 111 QYLAPDKYAGDRTSVLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKN 170 Query: 168 SATQGTREKLWTQVQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAYY 227 T R KL T +EF +++ + R++YLGTPQT ++Y L RG++ +WP + Sbjct: 171 GLTATERAKLITLSKEFTSIVADRN-GRILYLGTPQTRESIYNTLP-GRGFTVRVWPGRF 228 Query: 228 PRNKEEAMHYGDRLAP------MLKAEYDETPELLAGT---PTDPVRFDKEDLLERELEY 278 P+ E YGD LAP L + +T L GT TDP R+ +E+L ++EL+ Sbjct: 229 PK-ASELPKYGDALAPSILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQ 287 Query: 279 GKADFTLQFMLNPNLSDAAKYPLRIRDAIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGL 338 G F LQFMLN +LSDAA+ L++RD IV E P S W + + + DLP Sbjct: 288 GPETFELQFMLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPR-FKIDLPQE-F 345 Query: 339 KGDDIHGFHTAS--NNTAKYTERILIIDPSGRGKDETGYAVLFALNGYIYLMEAGGMRDG 396 + F AS + A+ L +DP+G G DE +A+ A+ YI+++ GG + G Sbjct: 346 PVQSVEMFRPASVHEHFAQIKSMTLFLDPAGNGGDELAFAIGGAVGPYIHVVAWGGFKGG 405 Query: 397 YSDKTLEALAKLAKKWKVNTVVFESNFGDGMFGKVFSPVLL--------KHHQCALEEIR 448 S+ L+ L +L K + V V+ E N G G ++ L + ++E Sbjct: 406 VSEDNLDKLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERH 465 Query: 449 AKGQKEVRICDTLEPVLQTHRLVIKDNVFVDDYQSARDHEGKHSVQYSLFYQMTRMARER 508 GQKE+RI +T+ PV+Q HRLV+ + D + + + +H S YQM + +R Sbjct: 466 KTGQKELRIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDR 525 Query: 509 GAVAHDDRLDALALGIEYLKNWMELDSDKNQKELVAAFIEEHM 551 G++ DDRLDAL + L ++ +D K Q+ AA ++E + Sbjct: 526 GSLTKDDRLDALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFL 568 >gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877482;genbank:gi:33300854;uniprot:Q7Y2C2 ;genbank:GeneID:1482617 Length = 601 Score = 268 bits (686), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 170/526 (32%), Positives = 270/526 (51%), Gaps = 38/526 (7%) Query: 21 AFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFRGIGKSFILCAYVVWLLWNNP 80 A LF+ +K T Q+D+A + + NK + A RG KS I C YVVW + NP Sbjct: 27 AMLFLGFKM------TWMQLDIADFMQDSPNKAMV-AAQRGEAKSTIACIYVVWCITQNP 79 Query: 81 QLKVLIVSASKERADANSIFIKNIIELLPFLSEMKP--RQGQRDSVISFDV--GLATPDH 136 + ++VS S ++A+ N I +I L+ ++P R G R S SFDV L + Sbjct: 80 ATRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEK 139 Query: 137 SPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFAALLKPLDTSRV 196 S S+ +GIT L G RADI++ DD+E N T R KL Q QEF ++ ++ Sbjct: 140 SASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT---HGKI 196 Query: 197 IYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDRLAPML---------KA 247 +YLGTPQ+ ++Y L RG+ IWP +P E+A YGD LAP + K Sbjct: 197 LYLGTPQSRESIYNGLP-ARGFLMRIWPGRFPTLDEQA-RYGDWLAPSILARIARLEEKG 254 Query: 248 EYDETPELLAGT---PTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYPLRIR 304 T + L GT DP R+++EDLL++EL+ G F LQ+ML+ +L+D + L++R Sbjct: 255 HNPRTGKGLDGTRGWAADPQRYNEEDLLDKELDQGPEGFQLQYMLDTSLADEQRMQLKLR 314 Query: 305 DAIVCPCDTEFAPLSYQWLPNAQ-NVRRDLPNVGLKGDDIHGFHTASNNTAKYTERILII 363 D + E P W + + ++ D + +++ + A + + + Sbjct: 315 DLLFIDATHESVPEQVAWAADERFKLKFDAHRFPVIKPELYLPALMAGGWAPLQQMTMFV 374 Query: 364 DPSGRGKDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFESNF 423 DP+G G DE YA+ L YI+++ GG + G++++ LE LA ++ V + E N Sbjct: 375 DPAGDGGDELSYALGGTLGPYIHVVSIGGWKGGFAEENLEKCIALAARYGVKVIYVEKNL 434 Query: 424 GDGMFGKVFSPVL---------LKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKD 474 G G G++F + L++ +E+ + GQKE RI DTL P++Q HRL+ Sbjct: 435 GAGAVGQLFRNHMRSIDPDTGKLRYEGIGVEDRQKSGQKERRIIDTLRPIMQRHRLIFHV 494 Query: 475 NVFVDDYQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDAL 520 + D+ S + + + S+F+Q+ + +RG++ DDR+DAL Sbjct: 495 SAMDSDHVSCQQYPADKRNERSVFHQIHNITTDRGSLPKDDRIDAL 540 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 266 bits (679), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 166/526 (31%), Positives = 269/526 (51%), Gaps = 38/526 (7%) Query: 21 AFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFRGIGKSFILCAYVVWLLWNNP 80 A LF+ +K T Q+D+A + + NK + A RG KS I C YVVW + +P Sbjct: 27 AMLFLGFKM------TWMQLDIADFMQDSPNKAMV-AAQRGEAKSTIACIYVVWCIVRDP 79 Query: 81 QLKVLIVSASKERADANSIFIKNIIELLPFLSEMKP--RQGQRDSVISFDV--GLATPDH 136 + + ++VS S ++A+ N I +I L+ ++P R G R S SFDV L + Sbjct: 80 RTRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKGVEK 139 Query: 137 SPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFAALLKPLDTSRV 196 S S+ +GIT L G RADI++ DD+E N T R KL Q QEF ++ ++ Sbjct: 140 SASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT---HGKI 196 Query: 197 IYLGTPQTEMTLYKELEDNRGYSTIIWPAYYPRNKEEAMHYGDRLAPML---------KA 247 +YLGTPQ+ ++Y L RG+ IWP +P +E YGD LAP + + Sbjct: 197 LYLGTPQSRESIYNGLP-ARGFLMRIWPGRFP-TLDEQERYGDWLAPSILERIARLEERG 254 Query: 248 EYDETPELLAGT---PTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSDAAKYPLRIR 304 T + L GT DP R+++EDL+++EL+ G F LQ+ML+ +L+D + L++R Sbjct: 255 HNPRTGKGLDGTRGWAADPQRYNEEDLIDKELDQGAEGFQLQYMLDTSLADEQRMQLKLR 314 Query: 305 DAIVCPCDTEFAPLSYQWLPNAQ-NVRRDLPNVGLKGDDIHGFHTASNNTAKYTERILII 363 D + E P W + + ++ D + +++ + A + + + Sbjct: 315 DLLFIDATHESVPEQVAWAADERFKLKFDAHRFPIIKPELYLPALMAGGWAPLQQMTMFV 374 Query: 364 DPSGRGKDETGYAVLFALNGYIYLMEAGGMRDGYSDKTLEALAKLAKKWKVNTVVFESNF 423 DP+G G DE YAV L YI+++ GG + G++++ LE LA ++ V + E N Sbjct: 375 DPAGDGGDELSYAVGGTLGPYIHVVSIGGWKGGFAEENLEKCIALAARYGVKVIYVEKNL 434 Query: 424 GDGMFGKVFSPVLL---------KHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVIKD 474 G G G++F + ++ +E+ + GQKE RI DTL P++Q HRL+ Sbjct: 435 GAGAVGQLFRNYMRSINPDTGKPRYEGIGIEDRQKSGQKERRIIDTLRPIMQRHRLIFHV 494 Query: 475 NVFVDDYQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDAL 520 + DY + + + + S+F+Q+ + +RG++ DDR+DAL Sbjct: 495 SAMDSDYVACQQYPADKRTERSVFHQIHNITTDRGSLPKDDRIDAL 540 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 176 bits (445), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 173/331 (52%), Gaps = 18/331 (5%) Query: 51 NKKFILQAFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPF 110 +K +++A RGI K+ + Y V+ + + P ++++VS + +RA+ + ++ I L F Sbjct: 65 HKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFRGLDF 124 Query: 111 LSEMKP--RQGQRDSVISFDV--GLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPS 166 L M P G R SV +F++ L D SPSV I + G+RADIILADDVE Sbjct: 125 LEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADIILADDVESMQ 184 Query: 167 NSATQGTREKLWTQVQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDNRGYSTIIWPAY 226 N+ T R L +EF ++ + D +IYLGTPQ ++Y L RGYS IW A Sbjct: 185 NARTAAGRALLEELTKEFESINQFGD---IIYLGTPQNVNSIYNNLP-ARGYSVRIWTAR 240 Query: 227 YPRNKEEAMHYGDRLAPMLKAEYDETPELLAG--------TPTDPVRFDKEDLLERELEY 278 YP ++E YGD LAPM+ + + P L +G P P +D + L+E+E+ Sbjct: 241 YPSVEQEQC-YGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDDVLIEKEISQ 299 Query: 279 GKADFTLQFMLNPNLSDAAKYPLRIRDAIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGL 338 G A F LQFMLN + DA +YPLR+ + I TE P+ W ++ N+ D P G Sbjct: 300 GAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSINIIGDAPKYGN 359 Query: 339 KGDDIHGFHTAS-NNTAKYTERILIIDPSGR 368 K D A T +I+ IDP+G+ Sbjct: 360 KPTDFMYRPVARPYEWGAVTRKIMYIDPAGK 390 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 63.2 bits (152), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 112/477 (23%), Positives = 187/477 (39%), Gaps = 102/477 (21%) Query: 51 NKKFILQAFRGIGKSFILCA-YVVWLLWNNPQLKVLIVSASKERADA----------NSI 99 N++ ++ A RG KS + YV+W ++ NP ++VL+ + K + A ++ Sbjct: 56 NRRRLVLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLVGTNLKRLSRAFIRELRQYFEDTW 115 Query: 100 FIKNIIELLPFL----------SEMKPRQGQRDSVISFDVGLATPD-------------- 135 +N+ + P + S+ + R QR++V +D LAT Sbjct: 116 LQQNVWNVRPHIEGALVPALSASDRRKRNSQRNNV-DYDEALATLTDDTKLIWSMEALQV 174 Query: 136 ------HSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEFAALLK 189 P+V++V I +TG D+++ DD+ NS T+ E + ++ ++L Sbjct: 175 IRPTVMKEPTVQTVSIGTTVTGDHYDLLILDDIVDFENSKTEDKAENILEWTRDLESVLD 234 Query: 190 P-----------LDTSRVIYLGTPQTEMTLYKELEDN-RGYSTIIWPAYYPRNKEEAMHY 237 P + + + +G + E T + E G W YY +EA + Sbjct: 235 PRQEHVYHYNPVANKAGALVVGKTKCEFTDFVGDEAVILGTRYFQWD-YYGYLLDEAEYL 293 Query: 238 GDR--LAPMLKAEYDETPELLAGTPTDPVRFDKEDLLERELEYGKADFTLQFMLNPNLSD 295 G R + + K D+ L RFD E ++E ++ LN Sbjct: 294 GIRSFMCNIYKNGEDDKDGYLWEE-----RFDAE-VVE----------NIKRRLNSFRRF 337 Query: 296 AAKYPLRIRDAIVCPCDTEFAPLSYQWLPNAQNVRRDLPNVGLKGDDIHGFHTASNNTAK 355 A++Y RI D + P +NV+ P DD GF S N Sbjct: 338 ASQYLNRI-----VTADEQLLP--------QENVQYFHPASVDVSDD--GF--VSINRDG 380 Query: 356 YTERI---LIIDPSGRGKDETGYAVLFA------LNGYIYLMEAGGMRDGYSDKTLEALA 406 Y R+ L++DP+ K VL N YI+ ++AG +T++ + Sbjct: 381 YKVRVKPMLVVDPAVSQKKTADNTVLTVGGYDNDKNLYIFDVKAGKFT---PSETIKHIF 437 Query: 407 KLAKKWKVNTVVFESNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEP 463 LA K+K+N V E+ G + H A+ E R KG K+ RI LEP Sbjct: 438 TLADKYKLNAVTLETVGGFALLSYQVKDAFKTHRPLAIREYRPKGDKQGRITAMLEP 494 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 59.3 bits (142), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 16/137 (11%) Query: 64 KSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLP----FLSEMKPRQG 119 KS ++ + W++ +P++ +L +SA+ A+ +KNI+ F + P++G Sbjct: 82 KSHMVATWCAWIITRHPEVTILYISATATLAETQLYAVKNILASSVYNRYFPEYIHPQEG 141 Query: 120 QRDSVISFDVGLATPDH---------SPSVKSVGITGQLTGSRADIILADDVEIPSNSAT 170 +R+ S + + DH ++ + G+T TG ADII+ADD+ +P N+ T Sbjct: 142 KREKWSSNAMSI---DHVQRKKEGIRDATIATAGLTTNTTGWHADIIVADDLVVPENAYT 198 Query: 171 QGTREKLWTQVQEFAAL 187 + RE + + +F ++ Sbjct: 199 EDGRESVQKKSSQFTSI 215 >gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640322;genbank:gi:21234401;genbank:GeneID :956064 Length = 535 Score = 47.8 bits (112), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 10/139 (7%) Query: 60 RGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNII------ELLPFLSE 113 R KS + +V W ++ NP + + V A++ A IK I+ L P + E Sbjct: 71 RDHQKSHCIAVWVCWQIFKNPAVTIAYVCATESLAILQLYDIKQILTSDEFTRLSPDMIE 130 Query: 114 --MKPRQGQRDSVISFDVGLATPDH--SPSVKSVGITGQLTGSRADIILADDVEIPSNSA 169 K RQ ++ I D + + P+V + G+ G+ +I++ DDV I NS Sbjct: 131 PMEKKRQKWAETAIIVDHPIRKKERPRDPTVLATGLDSNNIGAHCNIMVKDDVVIDKNSL 190 Query: 170 TQGTREKLWTQVQEFAALL 188 T+ R+K+ + +++L Sbjct: 191 TETARQKVEAKAGHLSSIL 209 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 51 NKKFILQAFRGIGKSFILCAYVVWLLWNNP------QLKVLIVSASKERADANSIFIKNI 104 +K+ +L+ R +GK+ +C ++W + P Q +LI++ +E+ D + K + Sbjct: 82 SKRTVLRLGRRLGKTETMCIMILWHAFTQPNKGPNNQYDILIIAPYEEQVD---LIFKRL 138 Query: 105 IELLPFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVE 163 +L+ ++ P + D I G + KS G RAD+I+ D+++ Sbjct: 139 SQLIDMSGDVNPSR-DIDKHIELPNGTVIHGITAGSKSGSGAANTRGQRADLIVLDEMD 196 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 17/193 (8%) Query: 46 VANPKNKKFILQAFRGIGKSFILCA-YVVWLLWNNPQLKVLIVSASKERADANSIFIKNI 104 V +P + + A RG KS ++ +V+W + + LI+ + E+A IK Sbjct: 79 VDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAE 138 Query: 105 IELLPFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITGQLTG-----SRADIILA 159 +E P L+ P+ + V + VG + V+ G ++ G R D+++ Sbjct: 139 LEFNPRLAMDFPQGAGKGRV--WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVIG 196 Query: 160 DDVEIPSNSATQGTREKL--WTQVQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDN-- 215 DD+E N + R+KL W + + +L DT VI +GT ++ L N Sbjct: 197 DDLENDENVRSPEQRDKLENWLK-KTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPL 255 Query: 216 ---RGYSTII-WP 224 R + II WP Sbjct: 256 WKRRKFKAIIEWP 268 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 17/193 (8%) Query: 46 VANPKNKKFILQAFRGIGKSFILCA-YVVWLLWNNPQLKVLIVSASKERADANSIFIKNI 104 V +P + + A RG KS ++ +V+W + + LI+ + E+A IK Sbjct: 79 VDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAE 138 Query: 105 IELLPFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITGQLTG-----SRADIILA 159 +E P L+ P+ + V + VG + V+ G ++ G R D+++ Sbjct: 139 LEFNPRLAMDFPQGAGKGRV--WQVGTIVTANDAKVQVFGSGKRMRGLRHGPHRPDLVVG 196 Query: 160 DDVEIPSNSATQGTREKL--WTQVQEFAALLKPLDTSRVIYLGTPQTEMTLYKELEDN-- 215 DD+E N + R+KL W + + +L DT VI +GT ++ L N Sbjct: 197 DDLENDENVRSPEQRDKLENWLK-KTVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPL 255 Query: 216 ---RGYSTII-WP 224 R + II WP Sbjct: 256 WKRRKFKAIIEWP 268 >gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfWMP4_40 # Family: family:all:543 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762670;genbank:gi:115304378;genbank:GeneI D:5142298 Length = 581 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 29 ALNLPPPTRCQIDMARTVANPKNKKFILQAFRGIGKSFILCAYVVWLLWNNPQLKVLIVS 88 AL L P +D V P + +LQ RG KS + Y++W ++ NP +++L S Sbjct: 65 ALILELPEDYYLDGKGGVKQPPTNR-LLQMPRGHLKSTLTVGYIMWRIYRNPNIRMLHAS 123 Query: 89 ASKERADANSIFIKNIIE 106 +E ++A ++N E Sbjct: 124 NIRELSEAFIRELRNYFE 141 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 40/267 (14%) Query: 1 MSNVRKQNQSNLKTLKADFIAFLFVLWKALNLP-PPTRCQIDMARTVANP---KNKKFIL 56 + NV ++ + +F A L ++ + + +P P CQ+ T NP + +F L Sbjct: 45 LENVSHESIRERCRVDLNFYAGL-IIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFAL 103 Query: 57 QAFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADA------NSIFIKNIIELLPF 110 RG K+ L W + +LIV AS+ +A A N + NI E+ Sbjct: 104 GLPRGFVKTGFLKILTCWFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGL 163 Query: 111 LSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSAT 170 S K + V + + + + + +V T + R D+I+ DDV+ Sbjct: 164 WSATKSVDNAKKKVGTINGKVVILLPAGAGTAVRGTNE-DHKRPDLIVCDDVQ------- 215 Query: 171 QGTREKLWTQVQE-------FAALLKPLD----TSRVIYLGTPQTEMTLYKELEDNRGYS 219 TRE ++VQ A L+K +D R+IYLG + + L N + Sbjct: 216 --TRECALSEVQNAALLEWFTATLVKCIDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWI 273 Query: 220 TIIWPAYYPRNKEEAMHYGDRLAPMLK 246 +++ A + G+ L P LK Sbjct: 274 SLVTGA--------ILEDGESLWPELK 292 >gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218809;genbank:gi:147917326;genbank:Ge neID:5142613 Length = 536 Score = 34.3 bits (77), Expect = 0.005, Method: Compositional matrix adjust. Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 40/267 (14%) Query: 1 MSNVRKQNQSNLKTLKADFIAFLFVLWKALNLP-PPTRCQIDMARTVANP---KNKKFIL 56 + NV ++ + +F A L ++ + + +P P CQ+ T NP + +F L Sbjct: 45 LENVSHESIRERCRVDLNFYAGL-IIPRVMRVPFPAFYCQLFTLLTQLNPDPYELMRFAL 103 Query: 57 QAFRGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADA------NSIFIKNIIELLPF 110 RG K+ L W + +LIV AS+ +A A N + NI E+ Sbjct: 104 GLPRGFVKTGFLKILTCWFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGL 163 Query: 111 LSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSAT 170 S K + V + + + + + +V T + R D+I+ DDV+ Sbjct: 164 WSATKSVDNAKKKVGTINGKVVILLPAGAGTAVRGTNE-DHKRPDLIVCDDVQ------- 215 Query: 171 QGTREKLWTQVQE-------FAALLKPLD----TSRVIYLGTPQTEMTLYKELEDNRGYS 219 TRE ++VQ A L+K +D R+IYLG + + L N + Sbjct: 216 --TRECALSEVQNAALLEWFTATLVKCIDNYGSNRRIIYLGNMYPGDCILQMLRKNPEWI 273 Query: 220 TIIWPAYYPRNKEEAMHYGDRLAPMLK 246 +++ A + G+ L P LK Sbjct: 274 SLVTGA--------ILEDGESLWPELK 292 >gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958123;genbank:gi:41057669;genbank:GeneID :2716813 Length = 507 Score = 33.1 bits (74), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 25/149 (16%) Query: 89 ASKERADANSIFIKNIIE-LLPFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITG 147 A + DA SI + + + P +S + +G +D+ FDV P+ + VG+ G Sbjct: 127 ARRNSTDAKSIMKEPVYRAVFPHVSLIG-FKGNKDTSNEFDV----PEGG-EFRGVGVGG 180 Query: 148 QLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEF------AALLKPLDT-SRVIYLG 200 LTG D+ + DD AT+ E L VQ+ + LL L S VI +G Sbjct: 181 PLTGFSIDVGIIDD-------ATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIG 233 Query: 201 TPQTEMTLY----KELEDNRGYSTIIWPA 225 TP + L +++E ++ + +PA Sbjct: 234 TPWSANDLLARVRRKMEGQPNFTLLSFPA 262 >gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705644;genbank:gi:23752329;genbank:GeneID :955741 Length = 507 Score = 33.1 bits (74), Expect = 0.010, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 25/149 (16%) Query: 89 ASKERADANSIFIKNIIE-LLPFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITG 147 A + DA SI + + + P +S + +G +D+ FDV P+ + VG+ G Sbjct: 127 ARRNSTDAKSIMKEPVYRAVFPHVSLIG-FKGNKDTSNEFDV----PEGG-EFRGVGVGG 180 Query: 148 QLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEF------AALLKPLDT-SRVIYLG 200 LTG D+ + DD AT+ E L VQ+ + LL L S VI +G Sbjct: 181 PLTGFSIDVGIIDD-------ATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIG 233 Query: 201 TPQTEMTLY----KELEDNRGYSTIIWPA 225 TP + L +++E ++ + +PA Sbjct: 234 TPWSANDLLARVRRKMEGQPNFTLLSFPA 262 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 32.3 bits (72), Expect = 0.015, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 25/149 (16%) Query: 89 ASKERADANSIFIKNIIE-LLPFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITG 147 A + DA SI + + + P +S + +G +D+ FDV + VG+ G Sbjct: 127 ARRNATDAKSIMKEPVYRAVFPHVSLIG-FKGGKDTSNEFDVPAGG-----EFRGVGVGG 180 Query: 148 QLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEF------AALLKPLDT-SRVIYLG 200 LTG D+ + DD AT+ E L VQ+ + LL L S VI +G Sbjct: 181 PLTGFSIDVGIIDD-------ATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIG 233 Query: 201 TPQTEMTLY----KELEDNRGYSTIIWPA 225 TP + L +++E ++ + +PA Sbjct: 234 TPWSANDLLARVRRKMEGQPNFTLLSFPA 262 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 32.3 bits (72), Expect = 0.016, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 25/149 (16%) Query: 89 ASKERADANSIFIKNIIE-LLPFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITG 147 A + DA SI + + + P +S + +G +D+ FDV + VG+ G Sbjct: 127 ARRNATDAKSIMKEPVYRAVFPHVSLIG-FKGGKDTSNEFDVPAGG-----EFRGVGVGG 180 Query: 148 QLTGSRADIILADDVEIPSNSATQGTREKLWTQVQEF------AALLKPLDT-SRVIYLG 200 LTG D+ + DD AT+ E L VQ+ + LL L S VI +G Sbjct: 181 PLTGFSIDVGIIDD-------ATKNAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIG 233 Query: 201 TPQTEMTLY----KELEDNRGYSTIIWPA 225 TP + L +++E ++ + +PA Sbjct: 234 TPWSANDLLARVRRKMEGQPNFTLLSFPA 262 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 31.2 bits (69), Expect = 0.038, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 71/170 (41%), Gaps = 20/170 (11%) Query: 35 PTRCQIDMARTVANPKNKKFILQAFRGIGKSFILCAYVV-WLLWNNPQLKVLIVSASKER 93 P QI + + +P+++ R +GKSFI AY + +L P +KVL+V+ + Sbjct: 38 PNGPQIAIINALEDPRHRFVTACVSRRVGKSFI--AYTLGFLKLLEPNVKVLVVAPNYSL 95 Query: 94 ADANSIFIKNIIELLPFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGITGQLTGSR 153 A+ I+ +I+ +E R+ +D I G + S G Sbjct: 96 ANIGWSQIRGLIKKYGLQTE---RENAKDKEIELANGSLF-----KLASAAQADSAVGRS 147 Query: 154 ADIILADDVEIPSNSATQGTREKLWTQVQEFAALLKPLDTSRVIYLGTPQ 203 D I+ D+ I S+ R VQ L KP S+ +++ TP+ Sbjct: 148 YDFIIFDEAAI-SDVGGDAFR------VQLRPTLDKP--NSKALFISTPR 188 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 28.1 bits (61), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 22/159 (13%) Query: 60 RGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQG 119 R GKS I+ AY++W + N + V I++ A + ++ L E P+ Sbjct: 83 RQSGKSTIVTAYLLWYVLFNANVNVAILANKAPTA-------REMLGRLQLSYENLPKWM 135 Query: 120 QRDSVISFDVG-LATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREKLW 178 Q+ ++ ++ G L + S + S + G +II D+ N + Sbjct: 136 QQ-GILGWNKGSLELENGSKILASSTSASAVRGMSFNIIFLDEFAFVPNHIAE------- 187 Query: 179 TQVQEFAALLKPLD---TSRVIYLGTPQTEMTLYKELED 214 Q FA++ + +++VI + TP YK D Sbjct: 188 ---QFFASVYPTISSGKSTKVIIISTPHGMNQFYKLWHD 223 >gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unknown # Family: family:all:144 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108709;genbank:gi:13487831;genbank:GeneID :920905 Length = 402 Score = 27.3 bits (59), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 17/107 (15%) Query: 413 KVNTVVFESNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVI 472 +VN E N G F + + CA+E+ KE RI + Q R Sbjct: 291 RVNASRIERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVR--- 347 Query: 473 KDNVFVDDYQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDA 519 F +D+++ ++ +YQ + G HDD DA Sbjct: 348 ----FPNDWRT----------RFPEYYQAMTTYQREGKNKHDDAPDA 380 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 63 GKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELL 108 GKS L +V W+L N+ K++ S ++ + ++F KN+ L Sbjct: 4 GKSLTLGKFVEWVLGNDHTKKIMTGSYNETLS---TVFSKNVRNTL 46 >gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453630;genbank:gi:84662666;genbank:GeneID :5142566 Length = 483 Score = 27.3 bits (59), Expect = 0.52, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%) Query: 81 QLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQGQRDSVISFDVGLATPDHSPS- 139 +V + S + RA AN ++I+ P E+ P S+++F G T D+ Sbjct: 89 HCRVALSSYALPRAKANLRDARSIM-CEPIYREIFPHA----SMLTFKGGRNTYDYFDHP 143 Query: 140 ---VKSVGITGQLTGSRADIILADDVEIPSNSATQGT 173 +K+ G+ G LTG D+ L DD+ + A T Sbjct: 144 YGFIKAQGVGGSLTGFSIDVGLNDDLTADAQDALSQT 180 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 27.3 bits (59), Expect = 0.54, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 17/107 (15%) Query: 413 KVNTVVFESNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVI 472 +VN E N G F + + CA+E+ KE RI + Q R Sbjct: 351 RVNASRIERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVR--- 407 Query: 473 KDNVFVDDYQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDA 519 F +D+++ ++ +YQ + G HDD DA Sbjct: 408 ----FPNDWRT----------RFPEYYQAMTTYQREGKNKHDDAPDA 440 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 63 GKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELL 108 GKS L +V W+L N+ K++ S ++ + ++F KN+ L Sbjct: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNETLS---TVFSKNVRNTL 106 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 27.3 bits (59), Expect = 0.55, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 19/130 (14%) Query: 60 RGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSI-FIKNIIELLPFLSEMKPRQ 118 R +G ++ AY + + N KVLI +A+KE N + IK E LP ++K R Sbjct: 63 RQMGVTWCAVAYALHQMIFNSNYKVLI-AANKEATAKNVLERIKFAYEQLPRFLQIKKRT 121 Query: 119 GQRDSV--ISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADDVEIPSNSATQGTREK 176 + + ++ A S S +S IT +++ ++ SN E+ Sbjct: 122 WNKTYIEFSNYSSARAVSSKSDSGRSESIT---------LLIVEEAAFISNM------EE 166 Query: 177 LWTQVQEFAA 186 LW VQ+ A Sbjct: 167 LWASVQQTLA 176 >gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: putative terminase large subunit TerL # Family: family:all:144 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852753;genbank:gi:31544028;interpro:IPR00 4921;interpro:IPR006517;uniprot:Q7Y5U7;genbank:GeneID:27 53564 Length = 487 Score = 26.6 bits (57), Expect = 0.93, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 28/178 (15%) Query: 16 KADFIAFLFVLWKALNLPPPTRCQIDMARTVANPKNKKFILQAFRGIGKSFILC-AYVVW 74 K DFI F + A L + V + K + ++ A GKS + + W Sbjct: 35 KPDFITGFFNILIAQELQ-------KFYQDVVDGKQPRLMIYAPPRSGKSELFSRRFPAW 87 Query: 75 LLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQG-------------QR 121 + NP+L+++ S S + A ++ ++ II+ P + P R Sbjct: 88 VFGQNPELQIIACSYSADLASRMNLDVQRIID-DPIYHSIFPNTALNIKNIATISGKPLR 146 Query: 122 DSVISFDVGLATPDHSPSVKSVGITGQLTGSRADIILADD-VEIPSNSATQGTREKLW 178 +S I VG H + +S G+ G +TG ADI + DD V+ + +Q R+ +W Sbjct: 147 NSEIFEIVG-----HLGAYRSAGVGGGITGMGADIAIIDDPVKDAKEANSQTVRDSIW 199 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 17/107 (15%) Query: 413 KVNTVVFESNFGDGMFGKVFSPVLLKHHQCALEEIRAKGQKEVRICDTLEPVLQTHRLVI 472 +VN E N G F + + CA+E+ KE RI + Q RL Sbjct: 351 RVNASRIERNNGGRSFARSVRDKIQGKVACAVEDFFQGNNKEARIYSNSYWIEQHVRL-- 408 Query: 473 KDNVFVDDYQSARDHEGKHSVQYSLFYQMTRMARERGAVAHDDRLDA 519 +D+++ ++ +YQ + G HDD DA Sbjct: 409 -----PNDWRT----------RFPEYYQAMTTYQREGKNKHDDAPDA 440 Score = 24.6 bits (52), Expect = 3.1, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 24/44 (54%) Query: 63 GKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIE 106 GKS L +V W+L N+ K++ S ++ + S ++N I+ Sbjct: 64 GKSLTLGKFVEWVLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQ 107 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 26/161 (16%) Query: 60 RGIGKSFILCAYVVWLLWNNPQLKVLIVSASKERADANSIFIKNIIELLPFLSEMKPRQG 119 R GKS I+ +Y++W + N + V I++ A + +++ L E P+ Sbjct: 82 RQSGKSTIVTSYLLWYVLFNANVNVAILANKAATA-------REMLQRLQLSYENLPKWL 134 Query: 120 QRDSVISFDVG-LATPDHSPSVKSVGITGQLTGSRADIILADDVE-IPSNSATQGTREKL 177 Q+ ++ ++ G L + S + + + G ++I D+ +P++ A Q Sbjct: 135 QQ-GILQWNRGSLELENGSKILAASTSASAVRGMSFNVIFLDEFAFVPNHVADQ------ 187 Query: 178 WTQVQEFAALLKPLDTS----RVIYLGTPQTEMTLYKELED 214 F + + P +S +VI + TP YK D Sbjct: 188 ------FFSSVYPTISSGKSTKVIIISTPHGMNMFYKLWHD 222 >gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp68 # Family: family:all:543 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950546;genbank:gi:119952237;genbank:GeneI D:5075700 Length = 530 Score = 24.6 bits (52), Expect = 3.5, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 14/134 (10%) Query: 109 PFLSEMKPRQGQRDSVISFDVGLATPDHSPSVKSVGI-TG----QLTGSRADIILADDVE 163 PFL + P+ D+ + F + H VK G TG ++ G R + + DD+ Sbjct: 133 PFLQQWIPKATFTDNYLEF---VNAEGHRLGVKMFGAKTGLRGTKIFGKRPVLCVLDDLV 189 Query: 164 IPSNSATQGTREKLWTQVQEFAALLKPLDTSR--VIYLGTPQTEMTLYKELEDNRGYSTI 221 ++ ++ + E + V + + LD +R VI+ GTP + + E ++ + Sbjct: 190 SDDDARSRTSMEAIKDTV--YKGVNHALDPTRRKVIFNGTPFNKEDILIEAVESGAWDVN 247 Query: 222 IWPAY--YPRNKEE 233 +WP +P +EE Sbjct: 248 VWPVCEKFPCTREE 261 Score = 24.3 bits (51), Expect = 4.8, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 488 EGKHSVQYSLFYQMTRMARERGAVAHDDRLDALALGIEYLKNW 530 E K S +LF R+A G DD +D +++ + YL W Sbjct: 455 EMKDSPIMTLFMGQIRLATINGLKGKDDCIDTISM-LGYLNPW 496 >gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: gene 2 protein # Family: family:all:54 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958178;genbank:gi:41057280;genbank:GeneID :2716664 Length = 470 Score = 23.9 bits (50), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 229 RNKEEAMHYGDRLAPMLKAEYDETPELLAGTPTDPVRFDKEDLLERELEYGKADFT-LQF 287 RNK +Y LA L Y P D + FDKE + E+ LE A+ T +Q Sbjct: 358 RNKRAQFYYA--LADRLYLTYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQR 415 Query: 288 MLNPN 292 N N Sbjct: 416 KFNNN 420 >gi|17806|lcl|protein:vir:2437 Length: 198 # NCBI annotation: major tail subunit # Family: family:all:2431 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046839;genbank:gi:9630407;genbank:GeneID: 1261604 Length = 198 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 10/16 (62%), Positives = 12/16 (75%) Query: 376 AVLFALNGYIYLMEAG 391 AVL A GY+Y+ EAG Sbjct: 7 AVLTAAVGYVYVAEAG 22 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.135 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 271,667 Number of Sequences: 514 Number of extensions: 12423 Number of successful extensions: 174 Number of sequences better than 100.0: 52 Number of HSP's better than 100.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 56 Number of HSP's gapped (non-prelim): 64 length of query: 586 length of database: 206,069 effective HSP length: 77 effective length of query: 509 effective length of database: 166,491 effective search space: 84743919 effective search space used: 84743919 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)