BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011054.1_cdsid_YP_002014219.1 [gene=BOOMER_3] [protein=gp3] [protein_id=YP_002014219.1] [location=797..2158] (453 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|14004|lcl|protein:vir:8183 Length: 506 # NCBI annotation: gp3... 739 0.0 gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: put... 223 5e-60 gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2... 197 2e-52 gi|14207|lcl|protein:vir:8315 Length: 503 # NCBI annotation: gp3... 187 2e-49 gi|12972|lcl|protein:vir:80678 Length: 503 # NCBI annotation: gp... 96 6e-22 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 76 1e-15 gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp3... 73 8e-15 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 72 1e-14 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 69 1e-13 gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: g... 58 2e-10 gi|14590|lcl|protein:vir:8098 Length: 515 # NCBI annotation: gp2... 50 4e-08 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 32 0.015 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 31 0.026 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 31 0.036 gi|27798|lcl|protein:vir:8408 Length: 214 # NCBI annotation: gp3... 30 0.072 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 29 0.11 gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Ter... 27 0.61 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 24 2.8 gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: h... 24 3.2 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 24 3.7 gi|25110|lcl|protein:vir:80755 Length: 501 # NCBI annotation: pu... 23 5.6 gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: h... 23 6.4 gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 23 6.4 gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hyp... 23 6.4 >gi|14004|lcl|protein:vir:8183 Length: 506 # NCBI annotation: gp3 # Family: family:all:523 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817976;genbank:gi:29566410;genbank:GeneID :2700964 Length = 506 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/451 (78%), Positives = 403/451 (89%), Gaps = 3/451 (0%) Query: 1 MGVAFDRWQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGIMVGLIAICLSRPGT 60 MG+ DRWQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWG+MVGL+AICLSRPGT Sbjct: 43 MGIVLDRWQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGVMVGLVAICLSRPGT 102 Query: 61 LVVWSSHHDRTSSETLTKIAGIVEKPAIRPKMRPMHPVVQSDDNRGVHFANGSRILFGAR 120 L VWSSHHDRTSS+TL KIAGIVE+P IRPKMR HPVV +DDNRGVHFANGS+ILFGAR Sbjct: 103 LAVWSSHHDRTSSQTLDKIAGIVERPEIRPKMRAQHPVVATDDNRGVHFANGSKILFGAR 162 Query: 121 AQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVALGVHD 180 + GFGRGFSEVDIQVYDECQNLK+SALTDMLAAMNVSEIGLAFFMGTPPRPQEVALGVH+ Sbjct: 163 SSGFGRGFSEVDIQVYDECQNLKDSALTDMLAAMNVSEIGLAFFMGTPPRPQEVALGVHE 222 Query: 181 AFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLAEANPSFGHRVGKS 240 AFKRRRD+AL K+RPFKG+YVEFAPESP+ VVADIDAP FW++LAE NPSFG RVGKS Sbjct: 223 AFKRRRDKALAPVKKRPFKGIYVEFAPESPETVVADIDAPRFWEKLAEVNPSFGFRVGKS 282 Query: 241 AIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVD-DLGDVSAFGVSATR 299 AIERLVENMSPEDVRREVFGIWDKTNE +VVP DQW +L DVD D DV+A+G++ATR Sbjct: 283 AIERLVENMSPEDVRREVFGIWDKTNETLAVVPRDQWNNLAADVDVDPEDVAAYGINATR 342 Query: 300 SGWFWIVACWSGVDDGVHVEIALGTQSEVEAVDFLRAYASRKTPIKHDSVGAAKALGEKL 359 SGW+WI ACW + HVEIALGTQSEVEA++F+ +A+++TPIKHDS GAAKALGEKL Sbjct: 343 SGWYWITACWRE-GESAHVEIALGTQSEVEAMNFMSRHATKRTPIKHDSTGAAKALGEKL 401 Query: 360 KQLKFKSSVYSSNESVAGNALWVSLVDQGRLTHGGQAELDVAVRGATRKDRPSGGWMMMP 419 K+L F +S Y+ NE+ AGNALW+SLV+QGRL+H GQ +L++AVRG+ R+DR SGGWM++P Sbjct: 402 KKLYFNASAYTQNEAGAGNALWLSLVEQGRLSHDGQQDLELAVRGSRRQDRTSGGWMLVP 461 Query: 420 RAESFDIGPAIAMSAAVYAAVTSKPRSSGGA 450 R+ESFDIGPAI+MS AVYAA+T++ R SG + Sbjct: 462 RSESFDIGPAISMSGAVYAAMTAR-RPSGNS 491 >gi|14676|lcl|protein:vir:2499 Length: 474 # NCBI annotation: putative terminase gp4 # Family: family:all:523 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569740;genbank:gi:18496890;genbank:GeneID :932339 Length = 474 Score = 223 bits (567), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 151/443 (34%), Positives = 222/443 (50%), Gaps = 29/443 (6%) Query: 1 MGVAFDRWQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGIMVGLIAICLSRPGT 60 MG+ FD WQ+D+ R+DG A D+ +SI RQ GKT+ + + A+C+ P T Sbjct: 36 MGLGFDLWQDDLGKLICAKRDDGLYAADMFA--MSIPRQTGKTYLLGALVFALCIKTPNT 93 Query: 61 LVVWSSHHDRTSSETLTKIAGIVEKPAIRPKMRPMHPVVQSDDNRGVHFANGSRILFGAR 120 V+W++H RT++ET + G+ ++ I P + +H + V F NGSRILFGAR Sbjct: 94 TVIWTAHRTRTAAETFRSMQGLAKRDKIAPHILNVH---TGNGKEAVLFKNGSRILFGAR 150 Query: 121 AQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVALGVHD 180 +GFGRGF+ VD+ ++DE Q L E+A+ DM+ A N + L GTPP+P + + Sbjct: 151 ERGFGRGFAGVDVLIFDEAQILTENAMDDMVPATNAAPNPLILLAGTPPKPTDPG----E 206 Query: 181 AFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLAEANPSFGHRVGKS 240 F R AL YVE + D AD D W ++ NPS+ HR Sbjct: 207 VFTVMRLDALAGDVD---DVGYVEISA----DEDADPDDRSQWRKM---NPSYPHRTSAR 256 Query: 241 AIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDLGD-----VSAFGV 295 AI R+ + + E +RE GIW K + VV +W D+ DLG +A V Sbjct: 257 AILRMRKALGDESFKREAMGIWPKVSVHQPVVKSGRWH----DLFDLGPEDGEAPNALAV 312 Query: 296 SATRSGWFWIVACWSGVDDGVHVEIALGTQSEVEAVDFLRAYASRKTPIKHDSVGAAKAL 355 + + ACW DDG HVE AVD++ A R+ P+ DS+ A AL Sbjct: 313 DMSHGLAISVGACWLMDDDGRHVEEVWAGTDTAAAVDWIAERAGRRIPVLIDSMSPAAAL 372 Query: 356 GEKLKQLKFKSSVYSSNESVAGNALWVSLVDQGRLTHGGQAELDVAVRGATRKD-RPSGG 414 +LK K K + + + G L+ + V+ LTHG Q L+ A+ GA ++ R +GG Sbjct: 373 APELKARKVKVKLTGAADMAKGCGLFENGVNADTLTHGDQPALNDALAGARKRPIRDAGG 432 Query: 415 WMMMPRAESFDIGPAIAMSAAVY 437 W R + I P +A++ A+ Sbjct: 433 WGWDRRDPTCVIHPLVAVTLALL 455 >gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI D:4157084 Length = 478 Score = 197 bits (502), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 150/451 (33%), Positives = 210/451 (46%), Gaps = 31/451 (6%) Query: 1 MGVAFDRWQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGIMVGLIAICLSRPGT 60 +G FDRWQ+ + L L G A D +SI RQ GKT+ I + A+ L PG Sbjct: 34 IGWTFDRWQDGLGRLILALDGTGLYAADTS--VISIPRQVGKTYLIGCIVFALALLTPGL 91 Query: 61 LVVWSSHHDRTSSETLTKIAGIVEKPAIRPKMRPMHPVVQSDDNRGVHFANGSRILFGAR 120 V+W++H +T+ ET + + P + +R V + + G++ NGSRILFGAR Sbjct: 92 TVIWTAHRTKTAKETFGSMKAMCATPLVNAHVRN---VSDARGDEGIYLHNGSRILFGAR 148 Query: 121 AQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVALGVHD 180 GFG GF+ V I V DE Q L + A+ D++ MN E L GTPPRP + + Sbjct: 149 ENGFGLGFAGVGILVLDEAQRLTDKAMDDLIPTMNTVENPLILLTGTPPRPTDSG----E 204 Query: 181 AFKRRRDRALEQKKRRPFKGVYVEFAPES---PDDVVADIDAPGFWDRLAEANPSFGHRV 237 F R AL+ + +YVEF+ + PDD +L +ANPS+ HR Sbjct: 205 VFTMLRQDALDGESE---GTLYVEFSADEGAHPDDRA----------QLRKANPSYPHRT 251 Query: 238 GKSAIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDLG-DVSAFGVS 296 + AI R+ +N++ E RE FGIWDK VV +WR L G + FGV Sbjct: 252 SERAIRRMRKNLTEESFLREAFGIWDKVVH-RPVVTAARWRRLESTGPAAGVKPNGFGVD 310 Query: 297 ATRSGWFWIVACWSGVDDGVHVEIALGTQSEVEAVDFLRAY--ASRKTPIKHDSVGAAKA 354 + S + A W D E+ G ++ A+ A R+T + DS A + Sbjct: 311 MSHSRMVSVNAVWLDGDQAHTEEVWAGDDTDAAVAWIADAWKRAGRRTVVVIDSESPAAS 370 Query: 355 LGEKLKQLKFKSSVYSSNESVAGNALWVSLVDQGRLTHGGQAELDVAV--RGATRKDRPS 412 L L+ V S+ A + + G LTHGGQ + AV G R R + Sbjct: 371 LVVDLENAGVNVYVTSAANMAAACGAVENRLKAGTLTHGGQMSVTDAVVKNGKRRPIRGA 430 Query: 413 GGWMMMPRAESFDIGPAIAMSAAVYAAVTSK 443 GGW R S I A+AM+ A+Y A K Sbjct: 431 GGWGWDRRNPSSQIHQAVAMTLALYGATKHK 461 >gi|14207|lcl|protein:vir:8315 Length: 503 # NCBI annotation: gp32 # Family: family:all:523 # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817883;genbank:gi:29566316;genbank:GeneID :1259511 Length = 503 Score = 187 bits (475), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 144/451 (31%), Positives = 214/451 (47%), Gaps = 43/451 (9%) Query: 1 MGVAFDRWQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGIMVGLIAICLSRPGT 60 +G++ DRWQ+ I L R DG LA V G +SI RQ GKT + L +C+ PG Sbjct: 69 LGLSLDRWQDGIAGLLLAYRPDGVLAHTVGGFGVSIPRQCGKTHTLTAVLFGLCVEYPGV 128 Query: 61 LVVWSSHHDRTSSETLTKIAGIVEKPAIRPKMRPMHPVVQSDDNRGVHFANGSRILFGAR 120 L +W+SHH +T++ET + ++ + P +R V + V FANGSRILFGAR Sbjct: 129 LAIWTSHHVKTNTETFQAVQAYAKRERVAPFIRK---VTLGSGDEAVEFANGSRILFGAR 185 Query: 121 AQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVALGVHD 180 +GFGRG VD+ + DE Q L + A+ DMLA +N S +GL ++GTPP+P + + + Sbjct: 186 ERGFGRGIPGVDVLMSDEAQILTQRAMQDMLATLNTSRLGLHIYVGTPPKPTDNS----E 241 Query: 181 AFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLAEANPSFGHRVGKS 240 F R E + V++E E D+D W ANPS HR Sbjct: 242 MFSVMRR---EAETGEATDIVWIECGAED----TGDLDDIEQW---MNANPSCPHRTPVV 291 Query: 241 AIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDLGDVSAFGVSA-TR 299 +I+RL + + RRE GIWD + SS W DLGD GV A TR Sbjct: 292 SIQRLRRRLDDDGFRREALGIWDASE--SSSFDLAAW-------SDLGD---RGVDAPTR 339 Query: 300 SGWFWIVA-----CWSGV------DDGVHVEIALGTQSEVEAVDFLRAYASRKTPIK-HD 347 + ++ CW GV DDG V + + AV+ +R + + + Sbjct: 340 AALVLDMSPDRRHCWIGVAGDVDTDDGEKVLLMAMETTAATAVEKVRQLVNERDIVDVAI 399 Query: 348 SVGAAKALGEKLKQLKFKSSVYSSNESVAGNALWVSLVDQGRLTHGGQAELDVAVRGATR 407 + GAA+AL L + + S + A + + + H QAEL+ A+ Sbjct: 400 TNGAARALEPALVEAAIEYQRLSQADVAAAYSTLQEGIKNKSVCHLDQAELNNAMMMTRT 459 Query: 408 KDRPSGGWMMMPRAE-SFDIGPAIAMSAAVY 437 + SG + R S ++ PA+A ++A++ Sbjct: 460 RFMTSGESEVFDRRNYSVNLSPAVACASALF 490 >gi|12972|lcl|protein:vir:80678 Length: 503 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285578;genbank:gi:148727084;genbank:Ge neID:5247049 Length = 503 Score = 96.3 bits (238), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 100/347 (28%), Positives = 147/347 (42%), Gaps = 37/347 (10%) Query: 2 GVAFDRWQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGIMVGLIAICLSRPGTL 61 G+ D WQ+ + L + +G LA V GV + RQ GK I+ + + G Sbjct: 34 GLTPDPWQQQVLDDWLAVGSNGRLASGVCGVF--VPRQNGKN-AILEIVELFKATIQGRR 90 Query: 62 VVWSSHHDRTSSETLTKIAGIVEKPAIRPKMRPM----------------HPVVQSDDNR 105 ++ ++H +++ + ++ E P + M HP + + + Sbjct: 91 ILHTAHELKSARKAFMRLRSFFENERQFPDLYRMVKSIRATNGQEAIVLHHPDCATFEKK 150 Query: 106 GVHFANGSRILFGARAQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIG--LAF 163 GS + F AR++G RGF+ VD V DE Q L + L +L ++ + G Sbjct: 151 CGCSGWGS-VEFVARSRGSARGFT-VDDLVCDEAQELSDEQLEALLPTVSAAPSGDPQQI 208 Query: 164 FMGTPPRPQEVALGVHDAFKRRRDRALEQKKRRPFKGVYVEFAPES-PDDVVADIDAPGF 222 F+GTPP P L R R +AL KR F ES PDDV Sbjct: 209 FLGTPPGP----LADGSVVLRLRGQALGGGKR--FAWTEFSIPDESDPDDVSRQ------ 256 Query: 223 WDRLA-EANPSFGHRVGKSAIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLC 281 W +LA + NP+ G R+ + E+MS RE G WD+ +SVVP D+W Sbjct: 257 WRKLAGDTNPALGRRLNFGTVSDEHESMSAAGFARERLGWWDRGQSAASVVPADKWAQSA 316 Query: 282 CDVDDLGDVSAFGVSATRSGWFWIVACWSGVDDGVHVEIALGTQSEV 328 D L FGVS +RSG +A D GVHVE+ G + Sbjct: 317 VDEASLVGGKVFGVSFSRSGDRVALAGAGKTDAGVHVEVIDGLSGTI 363 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 75.9 bits (185), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 109/470 (23%), Positives = 185/470 (39%), Gaps = 81/470 (17%) Query: 8 WQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGIMVGLIAICLSRPGTLVVWSSH 67 WQ+++ + + EDG G SI R+ GKT +V ++ + G ++ ++H Sbjct: 42 WQKNLLKEVMAIDEDGLWTHQKFG--YSIPRRNGKT--EIVYILELWSLVQGLSILHTAH 97 Query: 68 HDRTSSETLTKIAGIVEK---------PAIRPKMRPMHPVVQSDDNRGVHFANGSRILFG 118 TS + K+ +E +I+ K + +++S G I F Sbjct: 98 RISTSHSSYEKLKKYLEDSGYVEGEDFKSIKAKGQERLELIES----------GGVIQFR 147 Query: 119 ARAQ--GFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVAL 176 R G G GF DI V DE Q + + + S+ + GTPP P V+ Sbjct: 148 TRTSSGGLGEGF---DILVIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTP--VSS 202 Query: 177 GVHDAFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLAEANPSFGHR 236 G F RD + K + Y +A S +DV D +++ +NPS G+ Sbjct: 203 GT--VFTNYRDNTIAGKAK------YSGWAEWSVEDVKDIHDVEAWYN----SNPSMGYH 250 Query: 237 VGKSAIE-RLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDLGDVSAFGV 295 + + IE L E+ +V+R G W K N+ SV+ +W +L V+ L + Sbjct: 251 LNERKIEAELGEDKLDHNVQR--LGYWPKYNQ-KSVISEQEWNAL--KVNRLPVIKGKLF 305 Query: 296 SATRSGWFWIVACWSGVDDGVHVEIALGTQSE-----VEAVD-------------FLRAY 337 + G +DG +V +++ ++ VE +D FL+ Sbjct: 306 VGIKYG-----------NDGANVAMSIAVKTLSGKVFVETIDCQSIRNGNQWIINFLKKA 354 Query: 338 ASRKTPIKHDSVGAAKALGEKLKQLKFKSSVYSS-NESVAGNALWVSLVDQGRLTHGGQA 396 K I D L ++K K K + + E + N+LW + Q H GQ Sbjct: 355 DVEKVVI--DGQSGQSILTSEMKDFKLKEPILPTVKEIINANSLWEQGIFQKNFCHSGQP 412 Query: 397 ELDVAVRGATRKD-RPSGGWMMMPRAESFDIGPAIAMSAAVYAAVTSKPR 445 L V +++ SGG+ + + DI + A +A +KP+ Sbjct: 413 SLSTVVTNCDKRNIGTSGGFGYKSQFDDMDISLMDSALLAHWACSNNKPK 462 >gi|19181|lcl|protein:vir:9572 Length: 459 # NCBI annotation: gp38 # Family: family:all:523 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862877;genbank:gi:32469469;genbank:GeneID :1461314 Length = 459 Score = 72.8 bits (177), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 99/423 (23%), Positives = 173/423 (40%), Gaps = 38/423 (8%) Query: 2 GVAFDRWQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGIMVGLIAICLSRPGTL 61 G++ WQ+++ + + ++G G SI R+ GK+ + +G I G Sbjct: 37 GLSCYAWQKNLLLPMMAVDKNGLWVHQKFG--YSIPRRNGKSELLYIG--EIWGLHEGLN 92 Query: 62 VVWSSHHDRTSSETLTKIAGIVEKPAIRPKMRPMHPVVQSDDNRGVHFANGSRILFGARA 121 ++ ++H TS + K+ +EK + + R ++ G I F R Sbjct: 93 ILHTAHRISTSHASFEKVKRYLEKMGYVDG-EDFNSIRAKGQERIELYSTGGVIQFRTRT 151 Query: 122 Q--GFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVALGVH 179 G G GF D+ + DE Q + + + SE + GTPP P V+ G Sbjct: 152 SNGGLGEGF---DMLIIDEAQEYTTEQESALKYTVTDSENPITIMCGTPPTP--VSSGT- 205 Query: 180 DAFKRRRDRALEQKKRRPF-KGVYVEFAPESPDDVVADIDAPGFWDRLAEANPSFGHRVG 238 F + R+ L F KG Y +A S D +ID W +NPS G+ + Sbjct: 206 -VFTKYRETCL-------FGKGKYSGWAEWSVSDE-KEIDDVEAW---YNSNPSMGYHLN 253 Query: 239 KSAIE-RLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDLGDVS---AFG 294 + IE L E+ +++R G W N+ S + +W L +DD+ ++S + G Sbjct: 254 ERKIEAELGEDKLDHNIQR--LGFWPTYNQ-KSAISETEWNEL--KMDDIPELSGKLSVG 308 Query: 295 VSATRSGWFWIVACWSGVDDGVHVEIALGTQSEVEAVDFLRAYASRK--TPIKHDSVGAA 352 + + G ++ + +DG + QS +++ A+ + I D Sbjct: 309 IKYGQDGTNVAMSIAARTNDGRFFVETVDCQSVRNGNEWMVAFLRQADVAQIVIDGASGQ 368 Query: 353 KALGEKLKQLKFKSSVYSS-NESVAGNALWVSLVDQGRLTHGGQAELDVAVRGATRKDRP 411 K L E+LK + K+ + + E + NALW + Q + H GQ L +++ Sbjct: 369 KILDEELKDYRIKNVILPTVKEIIVANALWEQGIYQKTICHAGQPSLSKVATNCDKRNIG 428 Query: 412 SGG 414 S G Sbjct: 429 SNG 431 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 72.0 bits (175), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 108/470 (22%), Positives = 183/470 (38%), Gaps = 81/470 (17%) Query: 8 WQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGIMVGLIAICLSRPGTLVVWSSH 67 WQ+++ + + EDG G SI R+ GKT +V ++ + G ++ ++H Sbjct: 42 WQKNLLKEIMAIDEDGLWTHQKFG--YSIPRRNGKT--EIVYILELWALEQGLSILHTAH 97 Query: 68 HDRTSSETLTKIAGIVEK---------PAIRPKMRPMHPVVQSDDNRGVHFANGSRILFG 118 TS + K+ +E +I+ K + +++S G I F Sbjct: 98 RISTSHSSYEKLKKYLEDSGYVEGEDFKSIKAKGQERLELIES----------GGVIQFR 147 Query: 119 ARAQ--GFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVAL 176 R G G GF DI DE Q + + + S+ + GTPP P V+ Sbjct: 148 TRTSSGGLGEGF---DILFIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTP--VSS 202 Query: 177 GVHDAFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLAEANPSFGHR 236 G F RD L K + Y +A S +DV D +++ +NPS G+ Sbjct: 203 GT--VFTNYRDNTLAGKAK------YSGWAEWSVEDVKDIHDVEAWYN----SNPSMGYH 250 Query: 237 VGKSAIE-RLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVDDLGDVSAFGV 295 + + IE L E+ +V+R G W K N+ SV+ +W +L V+ L + Sbjct: 251 LNERKIEAELGEDKLDHNVQR--LGYWPKYNQ-KSVISEQEWNAL--KVNRLPVIKGKLF 305 Query: 296 SATRSGWFWIVACWSGVDDGVHVEIALGTQSE-----VEAVD-------------FLRAY 337 + G +DG +V +++ ++ VE +D FL+ Sbjct: 306 VGIKYG-----------NDGANVAMSIAVKTLSGKVFVETIDCQSIRNGNQWIINFLKKA 354 Query: 338 ASRKTPIKHDSVGAAKALGEKLKQLKFKSSVYSS-NESVAGNALWVSLVDQGRLTHGGQA 396 K I D L ++K K K + + E + N+LW + Q H GQ Sbjct: 355 DVEKVVI--DGQSGQSILTSEMKDFKLKEPILPTVKEIINANSLWEQGIFQKNFCHSGQP 412 Query: 397 ELDVAVRGATRKD-RPSGGWMMMPRAESFDIGPAIAMSAAVYAAVTSKPR 445 L V +++ SGG+ + + DI + A +A +K + Sbjct: 413 SLSTVVTNCDKRNIGTSGGFGYKSQFDDMDISLMDSALLAHWACSNNKLK 462 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 68.9 bits (167), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 104/448 (23%), Positives = 171/448 (38%), Gaps = 74/448 (16%) Query: 1 MGVAFDRWQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGI----MVGLIAICLS 56 +G D WQE + L L G A L + RQ GKT I +VGL +C Sbjct: 57 VGFELDPWQEFVLRNMLNLDAQGHWAAS--EALLLVPRQNGKTAIIEARELVGLYVVC-- 112 Query: 57 RPGTLVVWSSHHDRTSSETLTKIAGIVEKPAIRPKMRPMHPVVQSDDNRGV--------- 107 L + ++ + E+ ++ +E K+ +DN + Sbjct: 113 --DKLCIHTAVLFNAARESFYRLKARIENNETLNKITRFR---SGNDNMSIEVKPKKESR 167 Query: 108 HFANGSRILFGARAQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGT 167 H G R+++ AR RGFS D+ V DE L E+++ + A + + + Sbjct: 168 HPNAGGRVIYMARGTAVARGFS-ADVIVLDEAFALDEASIAAIDYATSARANPFIIYASS 226 Query: 168 PPRPQEVALGVHDA--FKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDR 225 G+ D+ ++ DR + Q +++E+ + D+D + R Sbjct: 227 --------TGLEDSTELEKLHDRGMRQDP----DMLFMEWCATT-----RDLDDEENYYR 269 Query: 226 LAEANPSFGHRVGKSAIERLVENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDVD 285 +NP+ G+R+ I + S + RE G+W+ N ++V+P DQW+SLC Sbjct: 270 ---SNPALGYRISIERIRKERNRHSDKTFGRERLGLWND-NAFNAVIPADQWKSLCLCHG 325 Query: 286 DLGDVSAFGVSATRSGWFWIVA-----------------CWSG--VDDGVHVEI---ALG 323 + D V +GW IV W+G D V +EI A G Sbjct: 326 TVHD--EHRVEGAEAGWSRIVTPTVVAIDSAPDSSLTTISWAGKNQDGQVQIEILQEASG 383 Query: 324 TQSEVEAVDFLRAYASRKTP----IKHDSVGAAKALGEKLKQLKFKSSVYSSNESVAGNA 379 VE V L +TP + + A L +L+ L + + ++ Sbjct: 384 VGWAVEFVAMLYDPQRVETPPPLAVVVQAGATAGQLIPELEALGIEVIPFGLRDACDACK 443 Query: 380 LWVSLVDQGRLTHGGQAELDVAVRGATR 407 + + RL H G L A+ GATR Sbjct: 444 YFYDRANDRRLAHLGDVSLASALGGATR 471 >gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: gp5 # Family: family:all:523 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552334;genbank:gi:160700654;genbank:Ge neID:5758934 Length = 544 Score = 58.2 bits (139), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 105/464 (22%), Positives = 179/464 (38%), Gaps = 43/464 (9%) Query: 8 WQEDIWYAALGLREDGTLACDVMGVTLSIARQAGKTWGIMVGLIAICLSRPGTLVVWSSH 67 WQ D + R DG A V L I RQ GKT I + +I L G +V+++ Sbjct: 78 WQWDAARKIMATRPDGLWAHP--DVCLIIPRQNGKTQLIALRII-YGLFFLGEKIVYTAQ 134 Query: 68 HDRTSSETLTKIAGIVEK-PAIRPKMRPMHPVVQSDDNRGVH----FANGSRILFGARAQ 122 +T + +I I+++ P++ +++PM V G H NG + G R + Sbjct: 135 RWQTVKDVYDRIVEIIKRRPSLLRRLKPMPGVPDGYSEAGQHGEIYTTNGGSLDMGPRTK 194 Query: 123 GFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVA-LGVHDA 181 GRG +++D+ ++DE ++K+ + + A + ++ T E GV Sbjct: 195 AVGRGQTKIDLAIFDEAYDIKDVLVGGLTGAQKAATNPQTIYISTAAVASEHPDCGVLAG 254 Query: 182 FKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGFWDRLAEANPSFGHRVGKSA 241 +R R K+ + + + DD P W RL A PSFG V + Sbjct: 255 MRRNGQR----KEPDLYAAEWCAPPGMARDD-------PEAW-RL--ACPSFGITVRERD 300 Query: 242 IERLVEN-------MSPEDVRREVFGIWDKTNE-VSSVVPGDQWRSLCCDVDDL-GDVSA 292 + R ++ D +G W E ++ D W +L L GD+ Sbjct: 301 LAREYRMARANARLLAIYDADYLGWGEWPPDPENTEPIIDPDWWEALTVLQPALVGDI-C 359 Query: 293 FGVSATRSGWFWIVACWSGVDDG-VHVEIALGTQSEV----EAVDFLRAYASRKTPIKHD 347 + T +W +A DG VHVE+ + + A+ L + I D Sbjct: 360 IAIERTLDTRYWCIAAGQRTIDGRVHVEVGYWRAANIGVVAAALLELVELWNPAAIIVDD 419 Query: 348 SVGAAKALGEKLKQLKFKSSVYSSNESVAGNALWVSLVDQGRLTHGGQAELDVAVRGATR 407 A +G Q + S+ + ++ V+ +TH GQ + + GA Sbjct: 420 RSKAKPIVGVMFNQ-GIEIETASTPKLAMYTQGFIDAVNAADVTHIGQKIITDGIAGAAM 478 Query: 408 KDRPSGGWMMMPRAESFDIGP----AIAMSAAVYAAVTSKPRSS 447 ++ P G + + + P A+A A + A KP +S Sbjct: 479 RELPRGDLVFDEKESGAPVAPLKAIALAHGAVLEYAAEPKPAAS 522 >gi|14590|lcl|protein:vir:8098 Length: 515 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817679;genbank:gi:29566110;genbank:GeneID :1259304 Length = 515 Score = 50.4 bits (119), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 77/351 (21%), Positives = 137/351 (39%), Gaps = 42/351 (11%) Query: 61 LVVWSSHHDRTSSETLTKIAGIVEK-PAIRPKMR--PMHPVVQSDDNRGVHF------AN 111 L+ WS+H + E + ++E P++ ++ P + V + + + Sbjct: 88 LISWSAHEMTPTREAFNDLVNLIESTPSLAKRLEDGPTNGVFRGAGTEAIALKPSKACPD 147 Query: 112 GSRILFGARAQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMN-VSEIGLAFFMGTPPR 170 G R++F AR GRG + + + DE L+ + + ++ ++ V + L Sbjct: 148 GQRVIFKARTNSGGRGLTGNKV-ILDEGFALRHAHMGSLMPTLSAVPDPQLLIGSSACHA 206 Query: 171 PQEVALGVHDAFKRRRDRALEQKKRRPFKGVYVEFAPESPDDVVADIDAPGF-------- 222 EV +H KR R L +KR Y+EF +P++ D + P + Sbjct: 207 DSEV---LHKLVKRGRSEELAPRKRL----GYLEFC--APENACEDDECPHYVGYPGCAM 257 Query: 223 --WDRLAEANPSFGHRVGKSAIERLVENMSPEDVRREVFGIWDKTN-EVSSVVPGDQWRS 279 + + ANP G R+ +E +++ P + RE G DK E + ++ D W + Sbjct: 258 DKREYIIMANPQAGRRITWEYLEGERDSLDPAEFGRERLGWHDKPAIEDAPLISKDGWAT 317 Query: 280 LCCDVDDLGDVSAFGVSATRSGWFWIVACWSGVDDG-VHVEIALGTQ-SEVEAVDFLRAY 337 G AFGV + + +DG +HV I + V + + Sbjct: 318 KMDPKSQPGPRLAFGVYVNKLQTAAAIGVAGYREDGKIHVGIVPAARGGNVATLPGINWI 377 Query: 338 ASRKTPIKH---------DSVGAAKALGEKLKQLKFKSSVYSSNESVAGNA 379 +R +K D AA AL LK+L F+ +N + NA Sbjct: 378 PARMKELKDSWRPCGWGLDDRSAAGALLPDLKKLGFEVGDEVTNGAGINNA 428 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 32.0 bits (71), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Query: 37 ARQAGKTWGIMVGLIAICLSRPGTLVVWSSHHDRTSSETLTKIAGI-VEKPAIRPKMRPM 95 +R GKTW V + PGT +V +S + E + KI + E P +R R + Sbjct: 85 SRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQAREVIEKIDDLRKESPNLR---REI 141 Query: 96 HPVVQSDDNRGVHFANGSRILFGARAQG 123 + S ++ V F NGS I A G Sbjct: 142 EDLKTSTNDAKVEFHNGSWIKIVASNDG 169 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 31.2 bits (69), Expect = 0.026, Method: Compositional matrix adjust. Identities = 58/241 (24%), Positives = 95/241 (39%), Gaps = 30/241 (12%) Query: 7 RWQEDIWYAALGLR--EDGTLACDVMGVTLSIARQAGKTW--GIMVGL--IAICLSRPGT 60 +WQ I + +G R ++GT +SIARQ GKTW I++ +C + Sbjct: 105 KWQSFILDSLIGWRTIDNGTR---FTTSNISIARQQGKTWLASILINFYYFVVCWNATSQ 161 Query: 61 LVVWSSHHDRTSSETLTKIA----GIVEKPAIRPKMRPMHPVVQSDDNRGVHFANGSRIL 116 ++ +S+ +++ ++ I+ P R Q+ V N + Sbjct: 162 DLLVASYDSEHATKLFNDVSLQAKTILSLPDFADDARERGVEAQT---TQVIAKNTKNTI 218 Query: 117 FGARAQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVAL 176 +QG G I VYDE NL+ AL + L + + G+ M + Sbjct: 219 RKGTSQGGGFDSFHNAIAVYDEIGNLR-PALNETLKQITSGQNGIKNRMFVKISTAYPDI 277 Query: 177 GVHDAFKRRRD---RALEQKKRRPFKGVY-VEFAPESPDDVVADIDAPGFWDRLAEANPS 232 V FK D A+E R V+ V +A +S D+V P W A++NP+ Sbjct: 278 KV--KFKNDEDVTRAAIEHDAVRDADNVFQVIYAQDSEDEVF----EPETW---AKSNPN 328 Query: 233 F 233 Sbjct: 329 L 329 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 30.8 bits (68), Expect = 0.036, Method: Compositional matrix adjust. Identities = 57/241 (23%), Positives = 95/241 (39%), Gaps = 30/241 (12%) Query: 7 RWQEDIWYAALGLR--EDGTLACDVMGVTLSIARQAGKTW--GIMVGL--IAICLSRPGT 60 +WQ I + +G R ++GT +SIARQ GKTW I++ +C + Sbjct: 106 KWQSFILDSLIGWRTVDNGTR---FTTSNISIARQQGKTWLASILINFYYFVVCWNATSQ 162 Query: 61 LVVWSSHHDRTSSETLTKIA----GIVEKPAIRPKMRPMHPVVQSDDNRGVHFANGSRIL 116 ++ +S+ +++ ++ I+ P R Q+ V N + Sbjct: 163 DLLVASYDSEHATKLFNDVSLQAKTILSLPEFADDARERGVEAQT---TQVIAKNTKNTI 219 Query: 117 FGARAQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVSEIGLAFFMGTPPRPQEVAL 176 +QG G I VYDE NL+ AL + L + + G+ M + Sbjct: 220 RKGTSQGGGFDSFHNAIAVYDEIGNLR-PALNETLKQITSGQNGIKNRMFVKISTAYPDI 278 Query: 177 GVHDAFKRRRD---RALEQKKRRPFKGVY-VEFAPESPDDVVADIDAPGFWDRLAEANPS 232 V FK D A+E R V+ V ++ +S D+V P W A++NP+ Sbjct: 279 KV--KFKNDEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVF----EPETW---AKSNPN 329 Query: 233 F 233 Sbjct: 330 L 330 >gi|27798|lcl|protein:vir:8408 Length: 214 # NCBI annotation: gp3 # Family: family:all:30874 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818304;genbank:gi:29566740;genbank:GeneID :1260058 Length = 214 Score = 29.6 bits (65), Expect = 0.072, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 20/39 (51%) Query: 226 LAEANPSFGHRVGKSAIERLVENMSPEDVRREVFGIWDK 264 +A ANP+ GH +ER E + E RRE G+ K Sbjct: 170 IASANPALGHLFTLEQVEREREILPGEIFRRERLGLNSK 208 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 28.9 bits (63), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 38/146 (26%) Query: 226 LAEANPSFGHRVGKS--AIERLVENMSPEDVRR-EVFGIWDKTNEVSSVVPGDQWRSLCC 282 A+ANPS G+ G + + R ++V R EV G W T +V + + ++W+S Sbjct: 264 FAQANPSAGYLAGMTIAGLMRAAAEAKEKNVERIEVLGQW-VTAKVDNFIDSEEWKSRHR 322 Query: 283 DVDDL-------------------------------GDVSAF-GVSATRSGWFWIVACWS 310 DV + D + F V R+GW W+V Sbjct: 323 DVASIFARIPNGARTVWAIDMSHDRRTTWLAAAVLTEDGNPFVTVRVKRTGWAWVVPTLI 382 Query: 311 GV-DDGVHVEIALGTQSEVEAVDFLR 335 + H E+AL + V A+DFL+ Sbjct: 383 ELAQQSGHREVALQAKG-VPAMDFLK 407 >gi|5427|lcl|protein:vir:95253 Length: 533 # NCBI annotation: Terminase, large subunit # Family: family:all:144 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944884;genbank:gi:38707825;genbank:GeneID :2744038 Length = 533 Score = 26.6 bits (57), Expect = 0.61, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%) Query: 246 VENMSPEDVRREVFGIWDKTNEVSSVVPGDQWRSLCCDV-----DDLGDVSAFGVSAT 298 +EN +P +V R FG W E S+ W+ C++ +D+ DV A+ ++AT Sbjct: 303 LENNTPVNVARLRFGNWKARAEGSNY-----WQRQWCEIVDSLPEDVFDVRAWDLAAT 355 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 24.3 bits (51), Expect = 2.8, Method: Compositional matrix adjust. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 266 NEVSSVVPGDQWRSLCCDVDDLGDVSAFGVSATRSGWFWIVACWSGVDDGVHVEIALGTQ 325 N ++SV P ++C +D V G S T + ++A G+ +++ +A G Q Sbjct: 387 NTITSVTPVPTVETVCIQIDHPSHVFLAGKSLTPTHNTELLA---GI--MLYLLVADGEQ 441 Query: 326 S-EVEAVDFLRAYASRKTPIKHDSVGAAKALGEKLKQLKFKSSVYSSNES 374 S E+ V + A+ + V + L ++LK + +K +Y + + Sbjct: 442 SGEIYGVARDKKQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTN 491 >gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164748;genbank:gi:56693161;genbank:GeneID :3197442 Length = 488 Score = 24.3 bits (51), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/75 (22%), Positives = 35/75 (46%) Query: 98 VVQSDDNRGVHFANGSRILFGARAQGFGRGFSEVDIQVYDECQNLKESALTDMLAAMNVS 157 +++++D+ + SR++F + + G +VD DE L +A +++ S Sbjct: 21 LIKNNDSVKMKQIRNSRMMFRSSSTGKALEGVDVDGLSLDEYDRLNPTAEISAKESLSSS 80 Query: 158 EIGLAFFMGTPPRPQ 172 + GL TP +P Sbjct: 81 KYGLLRRWSTPTQPN 95 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 8/109 (7%) Query: 32 VTLSIARQAGKTWGIMVGLIA-ICLSRPGTLVVWSSHHDRTSSETLTKIAGIVEKPAIRP 90 T +++RQ GKT + + L +C ++ + + +H S+E L + +E + P Sbjct: 156 TTCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGIL-AHKGSMSAEVLDRTKQAIE---LLP 211 Query: 91 KMRPMHPVVQSDDNRGVHFANGSRILFGARAQGFGRGFSEVDIQVYDEC 139 + P + + + NGS I A + RG S I + DEC Sbjct: 212 DF--LQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYI-DEC 257 >gi|25110|lcl|protein:vir:80755 Length: 501 # NCBI annotation: putative large terminase # Family: family:all:1430 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504114;genbank:gi:158079301;genbank:Ge neID:5666404 Length = 501 Score = 23.5 bits (49), Expect = 5.6, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Query: 198 FKGVYVEFAPESPDDVVADIDAPGFWDRLAEANPSFG 234 + + ++ AP +PD +VAD+ G D++A+ +G Sbjct: 324 IQSIKLQLAPYNPDIIVADVGDSG--DKVAKLMQIYG 358 >gi|20113|lcl|protein:vir:108299 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:144 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552286;genbank:gi:160700611;genbank:Ge neID:5758815 Length = 556 Score = 23.1 bits (48), Expect = 6.4, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%) Query: 254 VRREVFGIWDKTNEVSSVVPGDQWRSLCCD 283 +RRE WD NEV G +W + CD Sbjct: 499 LRRE----WDHNNEVFKDETGPKWATNFCD 524 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 23.1 bits (48), Expect = 6.4, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 14/25 (56%) Query: 246 VENMSPEDVRREVFGIWDKTNEVSS 270 V+NM + E+FG+W T V + Sbjct: 148 VDNMLSQPNIEEIFGLWSATKSVDN 172 >gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218809;genbank:gi:147917326;genbank:Ge neID:5142613 Length = 536 Score = 23.1 bits (48), Expect = 6.4, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 14/25 (56%) Query: 246 VENMSPEDVRREVFGIWDKTNEVSS 270 V+NM + E+FG+W T V + Sbjct: 148 VDNMLSQPNIEEIFGLWSATKSVDN 172 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.134 0.410 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 201,283 Number of Sequences: 514 Number of extensions: 9030 Number of successful extensions: 54 Number of sequences better than 100.0: 24 Number of HSP's better than 100.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 10 Number of HSP's gapped (non-prelim): 28 length of query: 453 length of database: 206,069 effective HSP length: 75 effective length of query: 378 effective length of database: 167,519 effective search space: 63322182 effective search space used: 63322182 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)