BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011046.1_cdsid_YP_002003999.1 [gene=bIBB29_gp11] [protein=putative major structural protein] [protein_id=YP_002003999.1] [location=6825..7730] (301 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|1857|lcl|protein:vir:93844 Length: 301 # NCBI annotation: put... 543 e-157 gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: puta... 533 e-153 gi|4347|lcl|protein:vir:94902 Length: 301 # NCBI annotation: put... 524 e-151 gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: maj... 523 e-151 gi|2319|lcl|protein:vir:93995 Length: 301 # NCBI annotation: maj... 522 e-150 gi|19603|lcl|protein:vir:4076 Length: 205 # NCBI annotation: maj... 30 0.030 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 24 2.1 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 23 3.6 gi|11077|lcl|protein:vir:78324 Length: 195 # NCBI annotation: Ts... 22 9.8 >gi|1857|lcl|protein:vir:93844 Length: 301 # NCBI annotation: putative structural protein # Family: family:all:3249 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764271;genbank:gi:115315584;genbank:GeneI D:5141538 Length = 301 Score = 543 bits (1400), Expect = e-157, Method: Compositional matrix adjust. Identities = 263/301 (87%), Positives = 283/301 (94%) Query: 1 MKLDYNSRKIFFGNEALIVADMAKGSSGKPVFSNHKIVAGLVSVGSMEDQAETNIYPADD 60 MKLDYNSR+IF+GN+ALIVADMAKGSSGKP F+N KIV GLVSVGSMEDQAETN YPADD Sbjct: 1 MKLDYNSREIFWGNQALIVADMAKGSSGKPEFTNVKIVTGLVSVGSMEDQAETNSYPADD 60 Query: 61 VPDHGVKKGATLIQGEMVFIQTDQALKEDILGQQRTANGLGWSTTGNWKTKCVQYLIKGR 120 VPDHGVKKGATL+QGEMVFIQTDQALKED+LGQQRT+NGLGWS TGNWKTKCVQYL+KGR Sbjct: 61 VPDHGVKKGATLLQGEMVFIQTDQALKEDMLGQQRTSNGLGWSPTGNWKTKCVQYLLKGR 120 Query: 121 KRDKVTGEFIDGYRVVVYPNLRPTAEATKESETESVDGVDPIQWTLAVQATDSDIYLNNG 180 KRDKVTGEF+DG+RVVVYPNL PTAEATKESET+SVDGVDPI+WTLAVQATDSDIYLN Sbjct: 121 KRDKVTGEFVDGWRVVVYPNLTPTAEATKESETDSVDGVDPIKWTLAVQATDSDIYLNGD 180 Query: 181 KKVSAIEYEIWGDQAKDFANKMEAGLFIMQPDTELAGEVTLVAPTLANVQTKTKGHNDGT 240 KKV AIEYEIWG+QAKDFA KME+GLFIMQ DTELAG VTLVAP +ANVQTKTKG+NDGT Sbjct: 181 KKVPAIEYEIWGEQAKDFAKKMESGLFIMQTDTELAGAVTLVAPVIANVQTKTKGNNDGT 240 Query: 241 IVLPATLKDSKGHDVKVTSVIKDVNGNVATNNELAPNVYIATFSAEGYKDVSTGFAVTDK 300 IVLPATLK+SKG D+KVT+VIKDV GNVATNNELAPNVYI TFSAEGY DVSTG AVTD+ Sbjct: 241 IVLPATLKNSKGQDIKVTAVIKDVKGNVATNNELAPNVYIITFSAEGYSDVSTGVAVTDR 300 Query: 301 P 301 P Sbjct: 301 P 301 >gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: putative major structural protein # Family: family:all:3249 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047126;genbank:gi:9630579;genbank:GeneID: 1261772 Length = 301 Score = 533 bits (1373), Expect = e-153, Method: Compositional matrix adjust. Identities = 259/299 (86%), Positives = 275/299 (91%) Query: 1 MKLDYNSRKIFFGNEALIVADMAKGSSGKPVFSNHKIVAGLVSVGSMEDQAETNIYPADD 60 MKLDYNSR+IFFGNEALIVADMAKGSSGKP F+NHKIV GLVSVGSMEDQAETN YPADD Sbjct: 1 MKLDYNSREIFFGNEALIVADMAKGSSGKPEFTNHKIVTGLVSVGSMEDQAETNSYPADD 60 Query: 61 VPDHGVKKGATLIQGEMVFIQTDQALKEDILGQQRTANGLGWSTTGNWKTKCVQYLIKGR 120 VPDHGVKKGATL+QGEMVFIQTDQALKEDILGQQRTANGLGWS TGNWKTKCVQYLIKGR Sbjct: 61 VPDHGVKKGATLLQGEMVFIQTDQALKEDILGQQRTANGLGWSPTGNWKTKCVQYLIKGR 120 Query: 121 KRDKVTGEFIDGYRVVVYPNLRPTAEATKESETESVDGVDPIQWTLAVQATDSDIYLNNG 180 KRDKVTGEFIDGYRVVVYPNLRPTAEATKESET+SVDGVDPIQWTLAVQATDSDIYLN Sbjct: 121 KRDKVTGEFIDGYRVVVYPNLRPTAEATKESETDSVDGVDPIQWTLAVQATDSDIYLNGN 180 Query: 181 KKVSAIEYEIWGDQAKDFANKMEAGLFIMQPDTELAGEVTLVAPTLANVQTKTKGHNDGT 240 KKV AIEYEIWG+QAKDFA KME+GLFIMQPDT LAG +TLVAP + NV T TKG+NDGT Sbjct: 181 KKVPAIEYEIWGEQAKDFAKKMESGLFIMQPDTVLAGAITLVAPVIPNVTTATKGNNDGT 240 Query: 241 IVLPATLKDSKGHDVKVTSVIKDVNGNVATNNELAPNVYIATFSAEGYKDVSTGFAVTD 299 IV+P TLKDSKG +KVTSVIKD G VATN +LAP VYIATFSA+GY+DV+ G +VTD Sbjct: 241 IVVPDTLKDSKGGTIKVTSVIKDAQGKVATNGQLAPGVYIATFSADGYEDVTAGVSVTD 299 >gi|4347|lcl|protein:vir:94902 Length: 301 # NCBI annotation: putative capsid # Family: family:all:3249 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762524;genbank:gi:115304223;genbank:GeneI D:5141215 Length = 301 Score = 524 bits (1349), Expect = e-151, Method: Compositional matrix adjust. Identities = 254/299 (84%), Positives = 272/299 (90%) Query: 1 MKLDYNSRKIFFGNEALIVADMAKGSSGKPVFSNHKIVAGLVSVGSMEDQAETNIYPADD 60 MKLDYNSR+IFFGNEALIVADMAKGSSGKP F+NHKIV GLVSVGSMEDQAETN YPADD Sbjct: 1 MKLDYNSREIFFGNEALIVADMAKGSSGKPEFTNHKIVTGLVSVGSMEDQAETNSYPADD 60 Query: 61 VPDHGVKKGATLIQGEMVFIQTDQALKEDILGQQRTANGLGWSTTGNWKTKCVQYLIKGR 120 VPDHGVKKGATL+QGEMVFIQTDQALKEDILGQQRTANGLGWS TGNWKTKCVQYLIKGR Sbjct: 61 VPDHGVKKGATLLQGEMVFIQTDQALKEDILGQQRTANGLGWSPTGNWKTKCVQYLIKGR 120 Query: 121 KRDKVTGEFIDGYRVVVYPNLRPTAEATKESETESVDGVDPIQWTLAVQATDSDIYLNNG 180 KRDKVTGEF+DGYRVVVYP+L PTAEATKESET+SVDGVDPIQWTLAVQATDSDIYLN G Sbjct: 121 KRDKVTGEFVDGYRVVVYPHLTPTAEATKESETDSVDGVDPIQWTLAVQATDSDIYLNGG 180 Query: 181 KKVSAIEYEIWGDQAKDFANKMEAGLFIMQPDTELAGEVTLVAPTLANVQTKTKGHNDGT 240 KKV AIEYEIWG+QAKDF KME+GLFIMQPDT LAG +TLVAP + NV T TKG+NDGT Sbjct: 181 KKVPAIEYEIWGEQAKDFVKKMESGLFIMQPDTVLAGAITLVAPVIPNVTTATKGNNDGT 240 Query: 241 IVLPATLKDSKGHDVKVTSVIKDVNGNVATNNELAPNVYIATFSAEGYKDVSTGFAVTD 299 IV+P TLKDSKG +KVTSVIKD +G VATN LAP VYI TFSA+ Y+DV+ G +VTD Sbjct: 241 IVVPDTLKDSKGGTIKVTSVIKDAHGKVATNGHLAPGVYIVTFSADSYEDVTAGVSVTD 299 >gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: major structural protein # Family: family:all:3249 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044957;genbank:gi:9629664;genbank:GeneID: 1261264 Length = 301 Score = 523 bits (1348), Expect = e-151, Method: Compositional matrix adjust. Identities = 253/299 (84%), Positives = 273/299 (91%) Query: 1 MKLDYNSRKIFFGNEALIVADMAKGSSGKPVFSNHKIVAGLVSVGSMEDQAETNIYPADD 60 MKLDYNSR+IFFGNEALIVADM KGS+GKP F+NHKIV GLVSVGSMEDQAETN YPADD Sbjct: 1 MKLDYNSREIFFGNEALIVADMTKGSNGKPEFTNHKIVTGLVSVGSMEDQAETNSYPADD 60 Query: 61 VPDHGVKKGATLIQGEMVFIQTDQALKEDILGQQRTANGLGWSTTGNWKTKCVQYLIKGR 120 VPDHGVKKGATL+QGEMVFIQTDQALKEDILGQQRT NGLGWS TGNWKTKCVQYLIKGR Sbjct: 61 VPDHGVKKGATLLQGEMVFIQTDQALKEDILGQQRTENGLGWSPTGNWKTKCVQYLIKGR 120 Query: 121 KRDKVTGEFIDGYRVVVYPNLRPTAEATKESETESVDGVDPIQWTLAVQATDSDIYLNNG 180 KRDKVTGEF+DGYRVVVYP+L PTAEATKESET+SVDGVDPIQWTLAVQATDSDIY N G Sbjct: 121 KRDKVTGEFVDGYRVVVYPHLTPTAEATKESETDSVDGVDPIQWTLAVQATDSDIYSNGG 180 Query: 181 KKVSAIEYEIWGDQAKDFANKMEAGLFIMQPDTELAGEVTLVAPTLANVQTKTKGHNDGT 240 KKV AIEYEIWG+QAKDFA KME+GLFIMQPDT LAG +TLVAP + NV T TKG+NDGT Sbjct: 181 KKVPAIEYEIWGEQAKDFAKKMESGLFIMQPDTVLAGAITLVAPVIPNVTTATKGNNDGT 240 Query: 241 IVLPATLKDSKGHDVKVTSVIKDVNGNVATNNELAPNVYIATFSAEGYKDVSTGFAVTD 299 IV+PATLKDSKG +KVTSVIKD +G VATN +LAP VYI TFSA+GY+DV+ G +VTD Sbjct: 241 IVVPATLKDSKGGTIKVTSVIKDAHGKVATNGQLAPGVYIVTFSADGYEDVTAGVSVTD 299 >gi|2319|lcl|protein:vir:93995 Length: 301 # NCBI annotation: major tail structural protein # Family: family:all:3249 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764325;genbank:gi:115315639;genbank:GeneI D:5176582 Length = 301 Score = 522 bits (1345), Expect = e-150, Method: Compositional matrix adjust. Identities = 253/299 (84%), Positives = 275/299 (91%) Query: 1 MKLDYNSRKIFFGNEALIVADMAKGSSGKPVFSNHKIVAGLVSVGSMEDQAETNIYPADD 60 MKLDYNSR+IF+GNEALIVADMAKGSSGKP F+N KIV GLVSVGSMEDQAETN YPADD Sbjct: 1 MKLDYNSREIFWGNEALIVADMAKGSSGKPEFTNVKIVTGLVSVGSMEDQAETNSYPADD 60 Query: 61 VPDHGVKKGATLIQGEMVFIQTDQALKEDILGQQRTANGLGWSTTGNWKTKCVQYLIKGR 120 VPDHGVKKG+TL+QGEMVFIQTDQALKED+LGQQRT+NGLGWS TGNWKTKCVQYL+KGR Sbjct: 61 VPDHGVKKGSTLLQGEMVFIQTDQALKEDMLGQQRTSNGLGWSPTGNWKTKCVQYLLKGR 120 Query: 121 KRDKVTGEFIDGYRVVVYPNLRPTAEATKESETESVDGVDPIQWTLAVQATDSDIYLNNG 180 KRDKVTGEF+DG+RVVVYP+L PTAEATKESET+SVDGVDPIQWTLAVQATDSDIYLN Sbjct: 121 KRDKVTGEFVDGWRVVVYPHLTPTAEATKESETDSVDGVDPIQWTLAVQATDSDIYLNGD 180 Query: 181 KKVSAIEYEIWGDQAKDFANKMEAGLFIMQPDTELAGEVTLVAPTLANVQTKTKGHNDGT 240 KKV AIEYEIWGDQAKDFANKMEAGLFIMQPDT LAG +TLVAP + NV T TKGHNDGT Sbjct: 181 KKVPAIEYEIWGDQAKDFANKMEAGLFIMQPDTVLAGAITLVAPVIPNVTTATKGHNDGT 240 Query: 241 IVLPATLKDSKGHDVKVTSVIKDVNGNVATNNELAPNVYIATFSAEGYKDVSTGFAVTD 299 IV+PATLKDSKG VKVTSVIKD +G VATN +LAP V+I TFSA+GY+DV+ G +VTD Sbjct: 241 IVVPATLKDSKGGTVKVTSVIKDAHGKVATNGQLAPGVHIVTFSADGYEDVTAGVSVTD 299 >gi|19603|lcl|protein:vir:4076 Length: 205 # NCBI annotation: major tail shaft protein # Family: family:all:11746 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043555;genbank:gi:9628689;genbank:GeneID: 1261181 Length = 205 Score = 30.4 bits (67), Expect = 0.030, Method: Compositional matrix adjust. Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 20/175 (11%) Query: 17 LIVADMAKGSSGKPVFSNHKIVAGLVSVGSMEDQAETNIYPADDVPDHGVKKGATLIQGE 76 ++ D A ++G P+ AGL + + DQ TN Y + P + GA + Sbjct: 17 VVFTDPAGSTTGIPI-------AGLRGIETKNDQKNTNFYAGFNAPYRTI-AGAKNTEIT 68 Query: 77 MVFIQTDQALKEDILGQQRTANGLGWSTTGNWKTKCVQYLIKGRKRDKVTGEFIDGYRVV 136 + A LG + G N+K Y + R D GY+ Sbjct: 69 VKSYDLPDAFATHALGFGNVS-GFLADDVANYKPYGFAYAERYRDDDGT------GYKAT 121 Query: 137 VYPNLRPTAEA-TKESETESVDGVDPIQWTLAVQATDSDIYLNNGKKVSAIEYEI 190 YP+++ T + T E++ ES G ++ T D L GKK +++++ Sbjct: 122 FYPSVQATTPSDTAEADEESPTGK---EYEHTATVTTGDFTL-GGKKRLFVKFKV 172 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 24.3 bits (51), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 12/68 (17%) Query: 36 KIVAGLVSVGSMEDQAETNIYPADDVPDHGVKKGATLIQGEMVFIQTDQALKEDILGQQR 95 KIV+G V V + + + YP VP H +K ++Q QA+++D L Sbjct: 257 KIVSGQVKVPNRQFVQISTAYPDPTVPFHEDEK---MLQ---------QAMEQDFLRDAD 304 Query: 96 TANGLGWS 103 T L WS Sbjct: 305 TYLCLIWS 312 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 23.5 bits (49), Expect = 3.6, Method: Compositional matrix adjust. Identities = 7/20 (35%), Positives = 14/20 (70%) Query: 187 EYEIWGDQAKDFANKMEAGL 206 EY ++G + +DF + M +G+ Sbjct: 220 EYHLFGQKQRDFISSMTSGM 239 >gi|11077|lcl|protein:vir:78324 Length: 195 # NCBI annotation: Tsh # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468650;genbank:gi:157325228;genbank:Ge neID:5601670 Length = 195 Score = 21.9 bits (45), Expect = 9.8, Method: Compositional matrix adjust. Identities = 11/43 (25%), Positives = 25/43 (58%) Query: 58 ADDVPDHGVKKGATLIQGEMVFIQTDQALKEDILGQQRTANGL 100 A + P + KKG+ ++ + ++ L + +LG+Q+ A+G+ Sbjct: 54 ASNGPYYISKKGSGDVKQTIGIMELPFELGQKLLGRQKNADGI 96 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.312 0.131 0.375 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 138,912 Number of Sequences: 514 Number of extensions: 6251 Number of successful extensions: 19 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 16 length of query: 301 length of database: 206,069 effective HSP length: 71 effective length of query: 230 effective length of database: 169,575 effective search space: 39002250 effective search space used: 39002250 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 37 (18.9 bits)