Query lcl|NC_011041.1_cdsid_YP_002003557.1 [gene=rv5_gp055] [protein=hypothetical protein] [protein_id=YP_002003557.1] [location=complement(50894..51319)] Match_columns 141 No_of_seqs 4 out of 7 Neff 1.9 Searched_HMMs 1612 Date Thu Nov 7 14:47:25 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_55 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_55_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:5258 Length: 123 # 97.0 7E-06 4.3E-09 48.8 7.7 111 5-141 1-113 (123) 2 protein:vir:95261 Length: 133 83.1 0.043 2.6E-05 28.1 7.8 119 11-141 1-127 (133) 3 protein:vir:44 Length: 120 # N 5.5 12 0.0076 14.6 4.7 112 1-134 7-120 (120) 4 protein:vir:80934 Length: 120 4.3 16 0.0098 14.0 4.8 112 1-134 7-120 (120) 5 protein:vir:96107 Length: 133 2.9 24 0.015 13.0 5.9 119 1-141 2-131 (133) 6 protein:vir:99571 Length: 131 2.8 24 0.015 13.0 5.0 116 1-128 2-131 (131) 7 protein:vir:98342 Length: 125 1.8 6.9 0.0043 16.0 -2.1 88 37-141 1-93 (125) 8 protein:vir:4704 Length: 125 # 1.8 6.9 0.0043 16.0 -2.1 88 37-141 1-93 (125) 9 protein:vir:9414 Length: 125 # 1.8 6.9 0.0043 16.0 -2.1 88 37-141 1-93 (125) 10 protein:vir:79988 Length: 125 1.8 6.9 0.0043 16.0 -2.1 88 37-141 1-93 (125) No 1 >protein:vir:5258 Length: 123 # NCBI annotation: hypothetical protein # Family: family:all:4880 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852763;genbank:gi:31544038;uniprot:Q776V7;genbank:GeneID:2777139 Probab=97.03 E-value=7e-06 Score=48.84 Aligned_cols=111 Identities=18% Similarity=0.408 Sum_probs=79.8 Q ss_pred ceecccccccccceecccceeeeeCCCCccccCCceeeeccceeeeeeecccccccccccchhcccCccccceeeeeeee Q lcl|NC_011041. 5 YKLIGKNRLIPRKTFKGRHRVYNKTVGGPFANEGLELEYEEFDVLECVVQPLTGRAAKDYSSQINPEGDRQYEAFTVYSS 84 (141) Q Consensus 5 y~Ll~knrLipr~t~qgR~R~y~k~~d~Pf~N~G~~v~Ye~F~v~ec~vQPltGra~rd~~~Q~~~eG~r~y~sytvys~ 84 (141) ..||+.+-++--+.| |+..=++.-+.-..|.|.+..+|+-+ +.|+|||.++.-+ |+||||.|-..+-++|+- T Consensus 1 m~~ldvs~v~ldpdF--~~titv~R~~g~~~~~g~~~~t~~~t-~~avVqP~~~~dl-----q~LpeG~ri~~sIkI~Tq 72 (123) T protein:vir:52 1 MSLINQSGRFLNSRF--RQQITVQKQSGSHSASGFDVRYEKQQ-ITAIVIPTSPNDV-----LLLPEGERYLPSIKVYTQ 72 (123) T ss_pred CCcccccccccCccc--CceEEEEccCccEeCCccccccccce-EEEEEeeCChhhc-----ccccccccccceEEEEec Confidence 457887777766777 55555666677788899999998888 5699999999999 999999999999999998 Q ss_pred eeeeccccchhhhhhheeccccCCCceEEEEEeecceecCCCceeEEEE-Eec-cCCCC Q lcl|NC_011041. 85 TKLYSPDEGTYAMADQIQLPDIRGDLKWFTVLKCDAYVTSGGGRYRFFV-VEE-PEGED 141 (141) Q Consensus 85 t~l~~~~eGs~~lsDQi~l~d~~g~~~WFtV~k~d~y~tsg~~ryr~yv-v~~-p~g~~ 141 (141) -.|-- +|-++- -+..|- |+-..-| .+|+||- |++ -+||. T Consensus 73 ~~L~v--------GD~vlw----~G~~Yr-Vi~~~d~-----s~YGYy~~i~~~~~~t~ 113 (123) T protein:vir:52 73 QQLNI--------GDLVDY----RGQTYK-IKTAANW-----GDYGYYNNIGVRHSQTA 113 (123) T ss_pred ccccc--------ccEEEe----CCcEEE-EEEcCCc-----cccceecceeecccccC Confidence 87765 254443 244554 4443334 6788773 332 23333 No 2 >protein:vir:95261 Length: 133 # NCBI annotation: Phage hypothetical protein # Family: family:all:31736 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944894;genbank:gi:38707834;genbank:GeneID:2744047 Probab=83.13 E-value=0.043 Score=28.10 Aligned_cols=119 Identities=20% Similarity=0.307 Sum_probs=73.9 Q ss_pred ccccccceecc-cce---eeeeCCCCccccCCceeeeccceeeeeeecccccccccccchh-cccCccccceeeeeeeee Q lcl|NC_011041. 11 NRLIPRKTFKG-RHR---VYNKTVGGPFANEGLELEYEEFDVLECVVQPLTGRAAKDYSSQ-INPEGDRQYEAFTVYSST 85 (141) Q Consensus 11 nrLipr~t~qg-R~R---~y~k~~d~Pf~N~G~~v~Ye~F~v~ec~vQPltGra~rd~~~Q-~~~eG~r~y~sytvys~t 85 (141) -+|.-|-++|- |+| .|+|+ ++-|-|++-.+++ ...++|||.+=-.++. ..| .+|||-|-=+.--+|+.. T Consensus 1 M~~~~rhs~~~~R~~seg~Y~~~-~GrWV~g~~~v~~----~i~asIQP~~~ss~~~-~q~~~lpeGrrit~avrIYTda 74 (133) T protein:vir:95 1 MRLLNRHSFVVKRKVSEDGYYND-DGDWVASQDIVEV----NCKGNIQPYIKGSVKN-GTQIALPEGIRLTDTRILYTTY 74 (133) T ss_pred CCccccceeEEEEeecCCceEcc-CCcccCCCCccce----eeeeeecccccccccc-cchhcccCCeeeeeEEEEEeee Confidence 44555555532 332 45553 2234444333332 3578999976555532 233 689999999999999999 Q ss_pred eeeccccchhhhhhheeccccCCCceEEEEEeecceecCCC---ceeEEEEEeccCCCC Q lcl|NC_011041. 86 KLYSPDEGTYAMADQIQLPDIRGDLKWFTVLKCDAYVTSGG---GRYRFFVVEEPEGED 141 (141) Q Consensus 86 ~l~~~~eGs~~lsDQi~l~d~~g~~~WFtV~k~d~y~tsg~---~ryr~yvv~~p~g~~ 141 (141) +|+-..|-.-..+|-.++ +..=..|+----|+ +|+ +-|||+.|---.=.. T Consensus 75 ~L~vage~~~~~gDvvl~-----dg~eYev~~r~~w~-~Gv~~isHyrY~aVR~~~~~~ 127 (133) T protein:vir:95 75 KLRTSDDVEWNESDIVMI-----DGHEYEVFMTMDWS-QQLSHTSHYEYIIIRRDKMNA 127 (133) T ss_pred eeeeecccccCCCcEEEE-----cCCceEEEEecchh-hccccCCceeEEEEeecchhh Confidence 999988877788898888 33333443333343 555 779999986432111 No 3 >protein:vir:44 Length: 120 # NCBI annotation: gp9 # Family: family:all:2747 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463470;swissprot:trembl:q9t1b4;genbank:gi:16798792;uniprot:Q9T1B4;genbank:GeneID:922373 Probab=5.50 E-value=12 Score=14.61 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=60.4 Q ss_pred CcccceecccccccccceecccceeeeeCCCCccccCCceeeecc-ceeeeeeecccccccccccchhcccCccccceee Q lcl|NC_011041. 1 MAAGYKLIGKNRLIPRKTFKGRHRVYNKTVGGPFANEGLELEYEE-FDVLECVVQPLTGRAAKDYSSQINPEGDRQYEAF 79 (141) Q Consensus 1 ma~~y~Ll~knrLipr~t~qgR~R~y~k~~d~Pf~N~G~~v~Ye~-F~v~ec~vQPltGra~rd~~~Q~~~eG~r~y~sy 79 (141) |.+.- .|.|--|+.-.|++ +|.. .|+ +.+..|.+ .+|.-|.+||=+-......+.|+.--|-= =-| T Consensus 7 ~~~m~-~iPk~~l~~sit~k----~~~~-~d~-----~g~~~y~~pv~I~nvRvd~~~~ysg~~n~rq~~~navi--Fi~ 73 (120) T protein:vir:44 7 ITNAP-PLPLDWLIHNISYE----AYKE-EDR-----HNQVVYEKGIEIEHVRVDFSKSNQIAGLSDSDRYDAVI--FID 73 (120) T ss_pred hhhcC-CcChhhccceEEEE----EecC-CCC-----CCCCcccCceeccCeEEecceeeecCCCCceeeeeeEE--EEe Confidence 22211 23455556666665 3433 343 44555554 88999999985544444444444322111 124 Q ss_pred eeeeeeeeeccccchhhhhhheeccccCCCceEEEEEeecceecCC-CceeEEEEE Q lcl|NC_011041. 80 TVYSSTKLYSPDEGTYAMADQIQLPDIRGDLKWFTVLKCDAYVTSG-GGRYRFFVV 134 (141) Q Consensus 80 tvys~t~l~~~~eGs~~lsDQi~l~d~~g~~~WFtV~k~d~y~tsg-~~ryr~yvv 134 (141) +++|....-...+|+ +|-..|.+.+=-.|. |.|+.|| +-.|..-|| T Consensus 74 a~~S~p~~~~~~~gs-------kI~f~G~eytI~~i~--~~~~~sn~vh~yEleVi 120 (120) T protein:vir:44 74 AVNSMNVPSDFVSRS-------RIFFSGKAYKIVKVI--PCYATSNSVHHWEIEVI 120 (120) T ss_pred cccCCccceecCcCC-------EEEeCCceEEEEeee--eccCCCCceEEEEEEeC Confidence 556665554445554 444444454444443 5677888 778888888 No 4 >protein:vir:80934 Length: 120 # NCBI annotation: gp9 # Family: family:all:2747 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468395;genbank:gi:157324969;genbank:GeneID:5601367 Probab=4.29 E-value=16 Score=14.01 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=61.9 Q ss_pred CcccceecccccccccceecccceeeeeCCCCccccCCceeeec-cceeeeeeecccccccccccchhcccCccccceee Q lcl|NC_011041. 1 MAAGYKLIGKNRLIPRKTFKGRHRVYNKTVGGPFANEGLELEYE-EFDVLECVVQPLTGRAAKDYSSQINPEGDRQYEAF 79 (141) Q Consensus 1 ma~~y~Ll~knrLipr~t~qgR~R~y~k~~d~Pf~N~G~~v~Ye-~F~v~ec~vQPltGra~rd~~~Q~~~eG~r~y~sy 79 (141) |.+.- .|.|--|+.-.|++ +|.. .|+ +.+..|. +++|.-|.+||=+-......+.|+.--|-= =-| T Consensus 7 ~~~m~-~iPk~~l~~sit~k----~~~~-~d~-----~g~~~y~~pv~I~nvRvd~~~~ysg~~n~rq~~~navi--Fi~ 73 (120) T protein:vir:80 7 VTNAP-PLPLDWLIHNISYE----AYKE-EGR-----HNQVVYEKGFEIEHVRVDFSKSNQIAGLSDSDRYDAVI--FID 73 (120) T ss_pred hhhcC-CcChhhccceEEEE----EecC-CCC-----CCCccccCceeccCeEEecceeeecCCCCceeeeeeEE--EEe Confidence 33221 24455666666765 3433 343 4455555 499999999985544444444444322111 124 Q ss_pred eeeeeeeeeccccchhhhhhheeccccCCCceEEEEEeecceecCC-CceeEEEEE Q lcl|NC_011041. 80 TVYSSTKLYSPDEGTYAMADQIQLPDIRGDLKWFTVLKCDAYVTSG-GGRYRFFVV 134 (141) Q Consensus 80 tvys~t~l~~~~eGs~~lsDQi~l~d~~g~~~WFtV~k~d~y~tsg-~~ryr~yvv 134 (141) +++|....-..-+|+ +|-..|.+.+=-.|. |.|+.|| +-.|..-|| T Consensus 74 a~~S~p~~~~~~~gs-------kI~f~G~eytI~~i~--~~~~~s~~vh~yEleVi 120 (120) T protein:vir:80 74 AVNSMNVPDDFISRS-------RIFFSGKAYKIVKVI--PCYATSENVHHWEIEVI 120 (120) T ss_pred cccCCccceecccCC-------EEEeCCceEEEEEee--eccCCCCceeEEEEEeC Confidence 566665554444544 444444554444443 5678888 778888888 No 5 >protein:vir:96107 Length: 133 # NCBI annotation: conserved hypothetical protein ORF026 # Family: family:all:7161 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294443;genbank:gi:149408340;genbank:GeneID:5237226 Probab=2.86 E-value=24 Score=13.04 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=65.4 Q ss_pred Ccccceecc-cccccccceecccceeeeeCCCCccccCCceeeeccceeeeeeecccccccccccchhcccCccccceee Q lcl|NC_011041. 1 MAAGYKLIG-KNRLIPRKTFKGRHRVYNKTVGGPFANEGLELEYEEFDVLECVVQPLTGRAAKDYSSQINPEGDRQYEAF 79 (141) Q Consensus 1 ma~~y~Ll~-knrLipr~t~qgR~R~y~k~~d~Pf~N~G~~v~Ye~F~v~ec~vQPltGra~rd~~~Q~~~eG~r~y~sy 79 (141) |--|-.||. -.++|+..+++=++ +-+---+|+.| =+..-|++++| +|++||..=...++ +- =+.|..-+ T Consensus 2 ~iPG~NLl~~A~~VI~~Q~V~y~r--f~~Rt~n~~gq-~i~~y~~p~~i-~gS~Q~V~~~~v~~----~G--Ld~~~~Yv 71 (133) T protein:vir:96 2 VIPGANLLRMAFSVIGTQLVQYRK--FEQRTKNSQAQ-YVSVFGEPFQL-AASIQRVRRDQYVQ----FN--LEFQRNYV 71 (133) T ss_pred cccchhHHHHHhhhhccccchhhc--ccccccccccc-eeeeecCCccc-eeeEEecChhheee----cC--cceeeeee Confidence 666666666 56667766654333 11112233322 24456788888 79999987555533 22 24566668 Q ss_pred eeeeeeeeeccccchhhhhhheecc----ccCCCceEE------EEEeecceecCCCceeEEEEEeccCCCC Q lcl|NC_011041. 80 TVYSSTKLYSPDEGTYAMADQIQLP----DIRGDLKWF------TVLKCDAYVTSGGGRYRFFVVEEPEGED 141 (141) Q Consensus 80 tvys~t~l~~~~eGs~~lsDQi~l~----d~~g~~~WF------tV~k~d~y~tsg~~ryr~yvv~~p~g~~ 141 (141) ..|.+-.+-+.+-|- --|+|..- |..|+..|+ +++-.|+=+-.|-.- ||- T Consensus 72 ~lf~s~~i~~iqRg~--agD~liwnGrr~~v~g~~dW~~QDGW~~~lcv~~G~~~ga~~----------~~~ 131 (133) T protein:vir:96 72 MIFANFEMVDLDRDL--AGDQFIWTGRVFQLESQGSWFYQDGWGVCLAVDIGTAKLAED----------GTL 131 (133) T ss_pred EeecCcceeecccCC--CCCEEEECCeEEEecccceeeeeccceEEEEEeecCCCCcCC----------cee Confidence 889998888888764 35777662 233444554 344444433332210 111 No 6 >protein:vir:99571 Length: 131 # NCBI annotation: hypothetical protein # Family: family:all:7161 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039798;genbank:gi:126011048;genbank:GeneID:4818266 Probab=2.81 E-value=24 Score=13.00 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=65.0 Q ss_pred Ccccceecc-cccccccceecccceeeeeCCCCccccCCceeeeccceeeeeeecccccccccccchhcccCccccceee Q lcl|NC_011041. 1 MAAGYKLIG-KNRLIPRKTFKGRHRVYNKTVGGPFANEGLELEYEEFDVLECVVQPLTGRAAKDYSSQINPEGDRQYEAF 79 (141) Q Consensus 1 ma~~y~Ll~-knrLipr~t~qgR~R~y~k~~d~Pf~N~G~~v~Ye~F~v~ec~vQPltGra~rd~~~Q~~~eG~r~y~sy 79 (141) |--|-.||. -.++|+..+++=++-+ +---+|+.| =+..-|++++| +|++||..=...++ +- =+.|..-+ T Consensus 2 ~iPG~NLl~~A~~VI~~Q~V~y~rf~--~Rt~n~~gq-~i~~y~~p~~i-~gS~Q~V~~~~v~~----~G--Ld~~~~Yv 71 (131) T protein:vir:99 2 IVPGSNLFMQAASVIALTPVPYLRFT--QRVLNPARQ-WITTYAAAVDV-PMSVQRVPRNKYVQ----FG--LEFQRNYV 71 (131) T ss_pred cccchHHHHHHhhhhccccchhhccc--ccccccccc-eeeeecCCccc-eeeEEecChhheee----cC--cceeeeEE Confidence 666777776 6677777765433322 111223222 24456788998 99999987655533 22 24566668 Q ss_pred eeeeeeeeeccccchhhhhhheecc----ccCCCceEEE------EEeecceec---CCCce Q lcl|NC_011041. 80 TVYSSTKLYSPDEGTYAMADQIQLP----DIRGDLKWFT------VLKCDAYVT---SGGGR 128 (141) Q Consensus 80 tvys~t~l~~~~eGs~~lsDQi~l~----d~~g~~~WFt------V~k~d~y~t---sg~~r 128 (141) ..|++-.+-+.+-|- --|+|..- |..|+..|+. ++-.|+=-- .|-|- T Consensus 72 ~lfts~~i~~iqRg~--agD~liwnGrr~~v~g~~dW~~QDGW~~~lcv~~Gi~~~~~~~~~ 131 (131) T protein:vir:99 72 RLFAPIEMVDLDRDC--GGDMIIWHGRQHKIESQNTWYLQDGWAMSLAVDLGIRSDQKGNPL 131 (131) T ss_pred EEeecCcceecccCC--CCCEEEECCeEEEecccceeeeeccceEEEEEEeecccCcCCCCC Confidence 899998888887764 35777662 2345555553 222221111 11111 No 7 >protein:vir:98342 Length: 125 # NCBI annotation: hypothetical protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918934;genbank:gi:119443696;genbank:GeneID:4594504 Probab=1.81 E-value=6.9 Score=15.98 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=41.1 Q ss_pred CCceeeeccceeeeeeecccccccccccchhcccCcccccee----eeeeeeeeeeccccchhhhhhheeccccCCCceE Q lcl|NC_011041. 37 EGLELEYEEFDVLECVVQPLTGRAAKDYSSQINPEGDRQYEA----FTVYSSTKLYSPDEGTYAMADQIQLPDIRGDLKW 112 (141) Q Consensus 37 ~G~~v~Ye~F~v~ec~vQPltGra~rd~~~Q~~~eG~r~y~s----ytvys~t~l~~~~eGs~~lsDQi~l~d~~g~~~W 112 (141) ||.+|+.++ ++..+|=|.-+. .--.++++-+|..-+.. =+-+ ..|+.||+|.|.+-+.+.+.. T Consensus 1 M~v~v~~~~---L~~~l~~l~~~~-~k~~~~Al~aga~~~~e~l~~~aP~--------~~~~~hl~d~I~vs~~k~~~~- 67 (125) T protein:vir:98 1 MGARIESNN---IEQGLKNAVLKM-NLNSNVIVKAGAMSLVPLLKSNTPF--------ANTKKHARDHIAVSNVKTDRH- 67 (125) T ss_pred CeeEeeHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCC--------CCCCchhhhheeecccccccc- Confidence 999998654 455666553332 11223455555443321 0111 235679999999954332100 Q ss_pred EEEEeecceecCCCceeE-EEEEeccCCCC Q lcl|NC_011041. 113 FTVLKCDAYVTSGGGRYR-FFVVEEPEGED 141 (141) Q Consensus 113 FtV~k~d~y~tsg~~ryr-~yvv~~p~g~~ 141 (141) ..+.|.+-|..... +|.--+=-||- T Consensus 68 ----~g~~~v~VG~~k~~~~~a~F~E~GT~ 93 (125) T protein:vir:98 68 ----TSEKIVTIGYAKGVSHRIHATEFGTM 93 (125) T ss_pred ----cceEEEEeccCCCCceEEEeccCCcc Confidence 01223333433321 22222334776 No 8 >protein:vir:4704 Length: 125 # NCBI annotation: phi PVL ORF 11 homologue # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061636;genbank:gi:9635723;genbank:GeneID:1262995 Probab=1.81 E-value=6.9 Score=15.98 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=41.1 Q ss_pred CCceeeeccceeeeeeecccccccccccchhcccCcccccee----eeeeeeeeeeccccchhhhhhheeccccCCCceE Q lcl|NC_011041. 37 EGLELEYEEFDVLECVVQPLTGRAAKDYSSQINPEGDRQYEA----FTVYSSTKLYSPDEGTYAMADQIQLPDIRGDLKW 112 (141) Q Consensus 37 ~G~~v~Ye~F~v~ec~vQPltGra~rd~~~Q~~~eG~r~y~s----ytvys~t~l~~~~eGs~~lsDQi~l~d~~g~~~W 112 (141) ||.+|+.++ ++..+|=|.-+. .--.++++-+|..-+.. =+-+ ..|+.||+|.|.+-+.+.+.. T Consensus 1 M~v~v~~~~---L~~~l~~l~~~~-~k~~~~Al~aga~~~~e~l~~~aP~--------~~~~~hl~d~I~vs~~k~~~~- 67 (125) T protein:vir:47 1 MGARIESNN---IEQGLKNAVLKM-NLNSNVIVKAGAMSLVPLLKSNTPF--------ANTKKHARDHIAVSNVKTDRH- 67 (125) T ss_pred CeeEeeHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCC--------CCCCchhhhheeecccccccc- Confidence 999998654 455666553332 11223455555443321 0111 235679999999954332100 Q ss_pred EEEEeecceecCCCceeE-EEEEeccCCCC Q lcl|NC_011041. 113 FTVLKCDAYVTSGGGRYR-FFVVEEPEGED 141 (141) Q Consensus 113 FtV~k~d~y~tsg~~ryr-~yvv~~p~g~~ 141 (141) ..+.|.+-|..... +|.--+=-||- T Consensus 68 ----~g~~~v~VG~~k~~~~~a~F~E~GT~ 93 (125) T protein:vir:47 68 ----TSEKIVTIGYAKGVSHRIHATEFGTM 93 (125) T ss_pred ----cceEEEEeccCCCCceEEEeccCCcc Confidence 01223333433321 22222334776 No 9 >protein:vir:9414 Length: 125 # NCBI annotation: phi PVL orf 11-like protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803392;genbank:gi:29028704;genbank:GeneID:1258141 Probab=1.81 E-value=6.9 Score=15.98 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=41.1 Q ss_pred CCceeeeccceeeeeeecccccccccccchhcccCcccccee----eeeeeeeeeeccccchhhhhhheeccccCCCceE Q lcl|NC_011041. 37 EGLELEYEEFDVLECVVQPLTGRAAKDYSSQINPEGDRQYEA----FTVYSSTKLYSPDEGTYAMADQIQLPDIRGDLKW 112 (141) Q Consensus 37 ~G~~v~Ye~F~v~ec~vQPltGra~rd~~~Q~~~eG~r~y~s----ytvys~t~l~~~~eGs~~lsDQi~l~d~~g~~~W 112 (141) ||.+|+.++ ++..+|=|.-+. .--.++++-+|..-+.. =+-+ ..|+.||+|.|.+-+.+.+.. T Consensus 1 M~v~v~~~~---L~~~l~~l~~~~-~k~~~~Al~aga~~~~e~l~~~aP~--------~~~~~hl~d~I~vs~~k~~~~- 67 (125) T protein:vir:94 1 MGARIESNN---IEQGLKNAVLKM-NLNSNVIVKAGAMSLVPLLKSNTPF--------ANTKKHARDHIAVSNVKTDRH- 67 (125) T ss_pred CeeEeeHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCC--------CCCCchhhhheeecccccccc- Confidence 999998654 455666553332 11223455555443321 0111 235679999999954332100 Q ss_pred EEEEeecceecCCCceeE-EEEEeccCCCC Q lcl|NC_011041. 113 FTVLKCDAYVTSGGGRYR-FFVVEEPEGED 141 (141) Q Consensus 113 FtV~k~d~y~tsg~~ryr-~yvv~~p~g~~ 141 (141) ..+.|.+-|..... +|.--+=-||- T Consensus 68 ----~g~~~v~VG~~k~~~~~a~F~E~GT~ 93 (125) T protein:vir:94 68 ----TSEKIVTIGYAKGVSHRIHATEFGTM 93 (125) T ss_pred ----cceEEEEeccCCCCceEEEeccCCcc Confidence 01223333433321 22222334776 No 10 >protein:vir:79988 Length: 125 # NCBI annotation: hypothetical protein # Family: family:all:135 # ACLAME annotation(s): phi:0000012 - phage head tail joining # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430006;genbank:gi:156604061;genbank:GeneID:5525448 Probab=1.81 E-value=6.9 Score=15.98 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=41.1 Q ss_pred CCceeeeccceeeeeeecccccccccccchhcccCcccccee----eeeeeeeeeeccccchhhhhhheeccccCCCceE Q lcl|NC_011041. 37 EGLELEYEEFDVLECVVQPLTGRAAKDYSSQINPEGDRQYEA----FTVYSSTKLYSPDEGTYAMADQIQLPDIRGDLKW 112 (141) Q Consensus 37 ~G~~v~Ye~F~v~ec~vQPltGra~rd~~~Q~~~eG~r~y~s----ytvys~t~l~~~~eGs~~lsDQi~l~d~~g~~~W 112 (141) ||.+|+.++ ++..+|=|.-+. .--.++++-+|..-+.. =+-+ ..|+.||+|.|.+-+.+.+.. T Consensus 1 M~v~v~~~~---L~~~l~~l~~~~-~k~~~~Al~aga~~~~e~l~~~aP~--------~~~~~hl~d~I~vs~~k~~~~- 67 (125) T protein:vir:79 1 MGARIESNN---IEQGLKNAVLKM-NLNSNVIVKAGAMSLVPLLKSNTPF--------ANTKKHARDHIAVSNVKTDRH- 67 (125) T ss_pred CeeEeeHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCC--------CCCCchhhhheeecccccccc- Confidence 999998654 455666553332 11223455555443321 0111 235679999999954332100 Q ss_pred EEEEeecceecCCCceeE-EEEEeccCCCC Q lcl|NC_011041. 113 FTVLKCDAYVTSGGGRYR-FFVVEEPEGED 141 (141) Q Consensus 113 FtV~k~d~y~tsg~~ryr-~yvv~~p~g~~ 141 (141) ..+.|.+-|..... +|.--+=-||- T Consensus 68 ----~g~~~v~VG~~k~~~~~a~F~E~GT~ 93 (125) T protein:vir:79 68 ----TSEKIVTIGYAKGVSHRIHATEFGTM 93 (125) T ss_pred ----cceEEEEeccCCCCceEEEeccCCcc Confidence 01223333433321 22222334776 Done!