Query lcl|NC_011020.1_cdsid_YP_001994568.1 [gene=21] [protein=gp21] [protein_id=YP_001994568.1] [location=13964..14410] Match_columns 148 No_of_seqs 10 out of 13 Neff 1.8 Searched_HMMs 1612 Date Thu Nov 7 13:50:54 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_21 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_21_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:2348 Length: 148 # 100.0 2E-106 2E-109 599.6 9.6 148 1-148 1-148 (148) 2 protein:vir:78292 Length: 148 100.0 2E-105 2E-108 594.1 9.4 148 1-148 1-148 (148) 3 protein:vir:78481 Length: 148 100.0 2E-105 2E-108 594.1 9.4 148 1-148 1-148 (148) 4 protein:vir:2436 Length: 139 # 100.0 1E-97 7E-101 552.3 9.9 137 2-148 1-137 (139) 5 protein:vir:4231 Length: 139 # 100.0 3.3E-97 2E-100 549.5 9.8 137 2-148 1-137 (139) 6 protein:vir:104092 Length: 140 100.0 5E-97 3E-100 548.5 9.7 137 2-148 1-137 (140) 7 protein:vir:7777 Length: 135 # 100.0 2E-96 1.2E-99 545.2 9.0 135 2-148 1-135 (135) 8 protein:vir:99005 Length: 170 64.2 0.11 6.8E-05 25.8 4.9 131 1-148 1-157 (170) 9 protein:vir:9576 Length: 131 # 36.8 0.46 0.00028 22.5 3.6 73 76-148 1-122 (131) 10 protein:vir:9761 Length: 140 # 23.8 0.82 0.00051 21.0 2.7 66 76-148 1-122 (140) 11 protein:vir:107851 Length: 175 22.6 0.79 0.00049 21.2 2.3 97 1-105 78-175 (175) No 1 >protein:vir:2348 Length: 148 # NCBI annotation: gp18 # Family: family:all:2820 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075285;genbank:gi:12657872;genbank:GeneID:920060 Probab=100.00 E-value=2.4e-106 Score=599.59 Aligned_cols=148 Identities=99% Similarity=1.500 Sum_probs=148.0 Q ss_pred CccccchhhhhHhhhhcccccccccccccccCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeecc Q lcl|NC_011020. 1 MAGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGAHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYS 80 (148) Q Consensus 1 ma~klprvq~VvlpiLR~~~~l~~pi~~vp~~~~~~v~tWv~didyR~fP~vniRRigG~R~~~~P~~~~lPViEmtaY~ 80 (148) ||+||||||+||+||||+|||||||||+||+++||+|+|||||||||+|||||||||||+|||++|++|++||||||||+ T Consensus 1 ma~k~Prvq~VV~PiLR~~~~~~~~~~~vp~l~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~ 80 (148) T protein:vir:23 1 MAGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGVHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYS 80 (148) T ss_pred CCcccchhhhhhhhhhcccccccccccccccccCceecccccccccccccceeeeecCCCCCCccchhhhcccceeeecc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhccCCCccceehhhhhhccccCCccccchhhhhhhheecccCCCC Q lcl|NC_011020. 81 AADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) Q Consensus 81 ~egl~e~eelYe~~LevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 148 (148) +|||+||||||||||||||||||+||||||||||||+||||||||||||||||||||||+|||||||| T Consensus 81 ~~gL~etEqlYEdaLevLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 148 (148) T protein:vir:23 81 AADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) T ss_pred ccCccchHHHHHHHHHHHHHHHhhhccCcchhhhhhhHhhccccCCcchhhhhhhhhhhhhcccCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:78292 Length: 148 # NCBI annotation: gp19 # Family: family:all:2820 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491671;genbank:gi:157786495;genbank:GeneID:5625770 Probab=100.00 E-value=2.5e-105 Score=594.05 Aligned_cols=148 Identities=99% Similarity=1.494 Sum_probs=148.0 Q ss_pred CccccchhhhhHhhhhcccccccccccccccCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeecc Q lcl|NC_011020. 1 MAGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGAHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYS 80 (148) Q Consensus 1 ma~klprvq~VvlpiLR~~~~l~~pi~~vp~~~~~~v~tWv~didyR~fP~vniRRigG~R~~~~P~~~~lPViEmtaY~ 80 (148) ||+||||||+||+||||+|||||.|||+||+++||+|+|||+|||||+|||||||||||+|||++|++|++||||||||+ T Consensus 1 ma~k~Prvq~VV~PiLR~~~~~~~~~~~vp~l~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~ 80 (148) T protein:vir:78 1 MAGKLPIVGEVVLPILRGHEDLSEPISTVPSLAGVHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYS 80 (148) T ss_pred CCcccchhhhhhhhhhcccccccccccccccccCceecccccccccccccceeeeecCCCCCCccchhhhcchheeeecc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhccCCCccceehhhhhhccccCCccccchhhhhhhheecccCCCC Q lcl|NC_011020. 81 AADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) Q Consensus 81 ~egl~e~eelYe~~LevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 148 (148) ++||+||||||||||||||||||+||||||||||||+||||||||||||||||||||||+|||||||| T Consensus 81 ~~gL~etEqlYEdaLevLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 148 (148) T protein:vir:78 81 AADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) T ss_pred ccCCcchHHHHHHHHHHHHHHHhhhccCcchhhhhhhhhhccccCCcchhhhhhhhhhhhhcccCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:78481 Length: 148 # NCBI annotation: gp19 # Family: family:all:2820 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491590;genbank:gi:157786413;genbank:GeneID:5625633 Probab=100.00 E-value=2.5e-105 Score=594.05 Aligned_cols=148 Identities=99% Similarity=1.494 Sum_probs=148.0 Q ss_pred CccccchhhhhHhhhhcccccccccccccccCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeecc Q lcl|NC_011020. 1 MAGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGAHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYS 80 (148) Q Consensus 1 ma~klprvq~VvlpiLR~~~~l~~pi~~vp~~~~~~v~tWv~didyR~fP~vniRRigG~R~~~~P~~~~lPViEmtaY~ 80 (148) ||+||||||+||+||||+|||||.|||+||+++||+|+|||+|||||+|||||||||||+|||++|++|++||||||||+ T Consensus 1 ma~k~Prvq~VV~PiLR~~~~~~~~~~~vp~l~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~ 80 (148) T protein:vir:78 1 MAGKLPIVGEVVLPILRGHEDLSEPISTVPSLAGVHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYS 80 (148) T ss_pred CCcccchhhhhhhhhhcccccccccccccccccCceecccccccccccccceeeeecCCCCCCccchhhhcchheeeecc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccCchhhHHHHHHHHHHHHHHHhhccCCCccceehhhhhhccccCCccccchhhhhhhheecccCCCC Q lcl|NC_011020. 81 AADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) Q Consensus 81 ~egl~e~eelYe~~LevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 148 (148) ++||+||||||||||||||||||+||||||||||||+||||||||||||||||||||||+|||||||| T Consensus 81 ~~gL~etEqlYEdaLevLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 148 (148) T protein:vir:78 81 AADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) T ss_pred ccCCcchHHHHHHHHHHHHHHHhhhccCcchhhhhhhhhhccccCCcchhhhhhhhhhhhhcccCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:2436 Length: 139 # NCBI annotation: gp22 # Family: family:all:2820 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046838;genbank:gi:9630406;genbank:GeneID:1261583 Probab=100.00 E-value=1e-97 Score=552.26 Aligned_cols=137 Identities=53% Similarity=0.914 Sum_probs=134.6 Q ss_pred ccccchhhhhHhhhhcccccccccccccccCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_011020. 2 AGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGAHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) Q Consensus 2 a~klprvq~VvlpiLR~~~~l~~pi~~vp~~~~~~v~tWv~didyR~fP~vniRRigG~R~~~~P~~~~lPViEmtaY~~ 81 (148) .++|||||+||+||||+| |.++||+|+|||+|||||+|||||||||||+||||+|++|++||||||||++ T Consensus 1 m~~~Prvq~VV~PiLR~~----------P~la~v~v~tWv~diD~R~FPminvRRiGG~R~~~~P~~~~~PViEmtaY~~ 70 (139) T protein:vir:24 1 MGAMPRVQSVVAPILRED----------PRLAGVTIVTWVPDIDFREFPMINIRRIGGIRNANAPKLHSLPVVEMSAYST 70 (139) T ss_pred CCCCchhhhHHhhhhhcC----------cccCCceeeeecccCccccccceeeeecCCCCCcccchhhccceeeeeeccc Confidence 578999999999999996 6778999999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhccCCCccceehhhhhhccccCCccccchhhhhhhheecccCCCC Q lcl|NC_011020. 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) Q Consensus 82 egl~e~eelYe~~LevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 148 (148) +|||||||||||||||||||||+||||||||||||+|||||||||||||||||||||||||+||||| T Consensus 71 ~gLie~E~lYEdaLevLYdAvk~q~qTPaGYL~Si~ETmGAtqfsS~f~dsWRvqGLI~LGvR~Pr~ 137 (139) T protein:vir:24 71 DGLIECEELYETALEVLYDAVKNGTQTPAGYLSSIFETMGATQFSSLYQDSWRIQGLIRLGVRTPRS 137 (139) T ss_pred cCccchHHHHHHHHHHHHHHHhccccCcchhhhhHhHhhccccCCccchhhhhhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:4231 Length: 139 # NCBI annotation: predicted 15.7Kd protein # Family: family:all:2820 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039686;swissprot:sw:q05228;genbank:gi:9625452;uniprot:Q05228;genbank:GeneID:2942946 Probab=100.00 E-value=3.3e-97 Score=549.52 Aligned_cols=137 Identities=54% Similarity=0.926 Sum_probs=134.5 Q ss_pred ccccchhhhhHhhhhcccccccccccccccCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_011020. 2 AGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGAHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) Q Consensus 2 a~klprvq~VvlpiLR~~~~l~~pi~~vp~~~~~~v~tWv~didyR~fP~vniRRigG~R~~~~P~~~~lPViEmtaY~~ 81 (148) .+||||||+||+||||+| |+++|++|+|||+|||||+|||||||||||+||||+|++|++||||||||++ T Consensus 1 m~~~Prvq~Vv~PiLR~~----------P~l~~v~V~tWv~diD~R~FPminvRRiGG~R~p~~Pt~~~~PViEmTaY~~ 70 (139) T protein:vir:42 1 MARMPRVQAVAAPILRSD----------PRLEGVTVTTWVPDVDFREFPMINLRRIGGTRNPNAPTLHTLPVVEMTAYTR 70 (139) T ss_pred CCcCchhHHHHhhhhcCC----------ccccCceeecccccCccccccceeeeecCCCCCCCCcchhccceeeeeeccc Confidence 579999999999999997 6667999999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhccCCCccceehhhhhhccccCCccccchhhhhhhheecccCCCC Q lcl|NC_011020. 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) Q Consensus 82 egl~e~eelYe~~LevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 148 (148) +||||||||||||||||||||++||||||||||||+||||||||||||||||||||||+||+||||| T Consensus 71 ~gLietE~lYEdaLevLYdAv~~q~qTPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvR~Pr~ 137 (139) T protein:vir:42 71 DGLIETEELYETALEVLYDAVENGTQTPAGYLTSIFETMGATQFSSLYQDSWRIQGLIRLGVRRPRT 137 (139) T ss_pred cCccchHHHHHHHHHHHHHHHhccccCcchhhhhhhhhhccccCCccchhhhhhhhhhhhcccCCcc Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 6 >protein:vir:104092 Length: 140 # NCBI annotation: gp24 # Family: family:all:2820 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655603;genbank:gi:109392474;genbank:GeneID:4156960 Probab=100.00 E-value=5e-97 Score=548.52 Aligned_cols=137 Identities=52% Similarity=0.913 Sum_probs=133.6 Q ss_pred ccccchhhhhHhhhhcccccccccccccccCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_011020. 2 AGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGAHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) Q Consensus 2 a~klprvq~VvlpiLR~~~~l~~pi~~vp~~~~~~v~tWv~didyR~fP~vniRRigG~R~~~~P~~~~lPViEmtaY~~ 81 (148) .+||||||+||+||||+ .|.+.|++|+|||+|||||+|||||||||||+|||++|++|++||||||||++ T Consensus 1 m~~~Prvq~VV~PiLR~----------~~~l~~v~v~tWv~diD~R~FPminvRRiGG~R~p~~P~~~~~PViEmtaY~~ 70 (140) T protein:vir:10 1 MARMPRVQKVVAPILRN----------ALTLDGVAITTWVPDVDYREFPMINIRRIGGIRNPKAPLLHTNPVIEMSAYST 70 (140) T ss_pred CCCCchhHHHHHhHhhc----------CCCccceeeeccccccccccccceeeeecCCCCCCccchhhhcceeeeeeccc Confidence 57999999999999998 34556999999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhccCCCccceehhhhhhccccCCccccchhhhhhhheecccCCCC Q lcl|NC_011020. 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) Q Consensus 82 egl~e~eelYe~~LevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 148 (148) ||||||||||||||||||||||+||||||||||||+|||||||||||||||||||||||||+||||| T Consensus 71 ~gLie~E~lYEdaLevLY~Av~~Q~qTPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLIrLGvR~Pr~ 137 (140) T protein:vir:10 71 EGLIECEELYEDALEELYLAVQSQTQTPAGYLTSIFETMGATQFSSLYQDSWRVQGLIRLGVRRPRS 137 (140) T ss_pred cCccchHHHHHHHHHHHHHHHhhhccCcchhhhhhhhhhccccCCccchhhhhhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 7 >protein:vir:7777 Length: 135 # NCBI annotation: gp22 # Family: family:all:2820 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817611;genbank:gi:29566041;genbank:GeneID:1259235 Probab=100.00 E-value=2e-96 Score=545.24 Aligned_cols=135 Identities=56% Similarity=0.979 Sum_probs=133.6 Q ss_pred ccccchhhhhHhhhhcccccccccccccccCCCceeeeccCCCCcccCCeeeEEecCCCCCcccchhhcCceeeeeeccc Q lcl|NC_011020. 2 AGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGAHVGTWVEDIDSRTFPLITVRRVGGTRSPEHPTLFTQPVVEMTAYSA 81 (148) Q Consensus 2 a~klprvq~VvlpiLR~~~~l~~pi~~vp~~~~~~v~tWv~didyR~fP~vniRRigG~R~~~~P~~~~lPViEmtaY~~ 81 (148) .+||||||+||+||||+ +++|++|+|||||||||+|||||||||||+||||+|++|++||||||||++ T Consensus 1 ~~~~Prvq~VV~PiLR~------------~L~~v~VgtWvediD~R~FPlinvRRvGG~R~p~~P~~~~~PViEmTaY~~ 68 (135) T protein:vir:77 1 MAQMPRVQAVVLPILRA------------ALPDVKVGSWIEDIDYRTFPMVNVRRVGGPRHETRPDKLALPVIEMTAYGR 68 (135) T ss_pred CCCCchhHHHHHHHHhh------------hcCCceecccccccccccccceeeeecCCCCCCccchhhhcchheeeeccc Confidence 67999999999999999 789999999999999999999999999999999999999999999999999 Q ss_pred cCchhhHHHHHHHHHHHHHHHhhccCCCccceehhhhhhccccCCccccchhhhhhhheecccCCCC Q lcl|NC_011020. 82 ADLPTTEQMYEDALEVLYRAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWRVFGLIRLGIRPPKN 148 (148) Q Consensus 82 egl~e~eelYe~~LevLY~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWRvqGLI~lGiRppr~ 148 (148) |||+||||||||||||||||||+||||||||||||+||||||||||||||||||||||+||+||||| T Consensus 69 ~gL~etEqlYEdaL~vLYdAv~~Q~~TPaGYLhSi~ETmGAtqfsS~f~dsWRvqGLI~LGvRpPr~ 135 (135) T protein:vir:77 69 EGLVETEKLYEDALEALYDAVKHQTQTPAGYLHSIKETMGATQFSSLFQDSWRVQGLIQLGVRPPRS 135 (135) T ss_pred cCccchHHHHHHHHHHHHHHHhhhccCcchhhhhHHHhhccccCCcchhhhhHhhhhhhhcccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 8 >protein:vir:99005 Length: 170 # NCBI annotation: gp34 # Family: family:all:32655 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655899;genbank:gi:109521471;genbank:GeneID:4157970 Probab=64.21 E-value=0.11 Score=25.83 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=87.3 Q ss_pred Cccccchh---------hhhHhhhhcccccccccccccccCCCceeeeccCCC------------CcccCCeeeEEecCC Q lcl|NC_011020. 1 MAGKLPIV---------GEVVLPILRGHEDLSNPISTVPSLAGAHVGTWVEDI------------DSRTFPLITVRRVGG 59 (148) Q Consensus 1 ma~klprv---------q~VvlpiLR~~~~l~~pi~~vp~~~~~~v~tWv~di------------dyR~fP~vniRRigG 59 (148) ||--+|.- -....+++.. -+|...+++|++|= -|-+=|.+-+-|-+| T Consensus 1 Ma~~lPDW~egda~l~v~dl~~q~~qk------------l~Pn~~v~~WipdDw~~~~~~~da~pt~~~~Ptl~~~R~~G 68 (170) T protein:vir:99 1 MADFLPDWWEGPEYLDVEDLFAQHFQK------------LLPNVRVCHWIQPDWYIPTGFVDATPTYGTEPTLRLWRQPG 68 (170) T ss_pred CccccCCccCCcHHHHHHHHHHHHHHH------------hCCCceeEeecCcccccccccccccccccccceEEEEecCC Confidence 88887764 1122233322 34889999999981 177779999999999 Q ss_pred CCCcccchhhcCceeeeeeccccCchhhHHHHHHHHHHHH-----HHHhhccCCCccceehhhhhhccccCCccccchhh Q lcl|NC_011020. 60 TRSPEHPTLFTQPVVEMTAYSAADLPTTEQMYEDALEVLY-----RAARLQTKTPAGYLHSVTETLGASHGPSPFDRTWR 134 (148) Q Consensus 60 ~R~~~~P~~~~lPViEmtaY~~egl~e~eelYe~~LevLY-----~Avr~Qt~TpaGYl~si~ETmGaTqfsS~f~dsWR 134 (148) .++-+. .-+-|.+|+-+-+.. --+.-+|-+=|-++|- +.++.--|- -| ++|+.|-.|--+.+-.=.|.-- T Consensus 69 q~D~d~--~~Da~~lq~~vvt~S-r~DS~~l~~fvr~im~a~~~g~~~~~~~qv-v~-i~sv~e~~Gp~~iP~~~~D~r~ 143 (170) T protein:vir:99 69 QRDDES--TTDAPLLQFAAVTRS-HGDSIQLIEFVHTVMRALNNGHKIKYNGQL-VG-IKNVGLWLGPQTIPEGPIDEFF 143 (170) T ss_pred ccchhh--ccchhhhhhhhhccC-hHHHHHHHHHHHHHHHhhhcCCeeeeCCce-EE-EEEeccccccccCCCCCccceE Confidence 887665 345566776655431 1234455555555554 222211111 22 7888899999999888888888 Q ss_pred hhhhheecccCCCC Q lcl|NC_011020. 135 VFGLIRLGIRPPKN 148 (148) Q Consensus 135 vqGLI~lGiRppr~ 148 (148) |--+-..-+|-||- T Consensus 144 V~atyevtv~~~r~ 157 (170) T protein:vir:99 144 VPVTYKFTVAGKKL 157 (170) T ss_pred eeeEEEEEeecccC Confidence 88899999999998 No 9 >protein:vir:9576 Length: 131 # NCBI annotation: gp42 # Family: family:all:1271 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862881;genbank:gi:32469473;genbank:GeneID:1461318 Probab=36.84 E-value=0.46 Score=22.45 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=35.6 Q ss_pred eeeccccC--------chhhH-----HHHHH-----------------------------HHHHHHHHHhhccCCCccce Q lcl|NC_011020. 76 MTAYSAAD--------LPTTE-----QMYED-----------------------------ALEVLYRAARLQTKTPAGYL 113 (148) Q Consensus 76 mtaY~~eg--------l~e~e-----elYe~-----------------------------~LevLY~Avr~Qt~TpaGYl 113 (148) |++|-+-. |-.-| .|-++ +-.|--++|+.+..+|+++. T Consensus 1 m~~fAtv~D~~~rwr~Lt~~E~~ra~~LL~~As~~ir~~~p~~~~~l~~~~~~~~~~~~~~~~V~~~~V~Ral~~~~~~~ 80 (131) T protein:vir:95 1 MENFATVEDLKKLWRALKFDEEKRAEALLEVVSHSLRVEAKKVGKDLDGLVATDPSFTMVVKSVTVDVVARTLMTSTDQE 80 (131) T ss_pred CCccCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccCCccchHHHHHHHHHHHHHHhcCCCCCC Confidence 88876621 11111 22222 23356677888888885542 Q ss_pred --ehhhhhhccccCCccccchhhh-----hhhheecccCCCC Q lcl|NC_011020. 114 --HSVTETLGASHGPSPFDRTWRV-----FGLIRLGIRPPKN 148 (148) Q Consensus 114 --~si~ETmGaTqfsS~f~dsWRv-----qGLI~lGiRppr~ 148 (148) .|..||-|--++|--|...|.= .=+-+||++.+|- T Consensus 81 G~tq~S~TaG~ys~S~t~~~p~g~lylt~~e~~~LGl~~~r~ 122 (131) T protein:vir:95 81 PMTQVAESALGYSFSGSYLVPGGGLFIKDSELKRLGLKKQRY 122 (131) T ss_pred CceeeeeecccceeeeeeecCCCCceeChHHHHHhCCCCCce Confidence 2334444433333222222111 1135789988887 No 10 >protein:vir:9761 Length: 140 # NCBI annotation: hypothetical protein # Family: family:all:1271 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795523;genbank:gi:28876281;genbank:GeneID:1257822 Probab=23.76 E-value=0.82 Score=21.04 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=34.0 Q ss_pred eeeccccCc-------------hhhHHHHHHHHHHH-----------------------------HHHHhhccCCCccce Q lcl|NC_011020. 76 MTAYSAADL-------------PTTEQMYEDALEVL-----------------------------YRAARLQTKTPAGYL 113 (148) Q Consensus 76 mtaY~~egl-------------~e~eelYe~~LevL-----------------------------Y~Avr~Qt~TpaGYl 113 (148) |++|-+-.. --.+.|-++|-+.| -+.|+....+++ T Consensus 1 m~~fATv~Dv~~rwr~Lt~dE~~ra~~LL~dAS~~iR~~~p~~g~~~~~~~~~~~~~~~~~k~V~~~mV~Ral~~~~--- 77 (140) T protein:vir:97 1 MGNFATTDDVILLWRPLSVDELKRANALLKVVSDTLRMEADKVGKDLDKTMVDKPYFVNVIKSVTVDIVARTLMTST--- 77 (140) T ss_pred CCcCCCHHHHHHHhcCCCHhHHHHHHHHHHHHHHHHHHhhhhccCCcchhcccCccchhHHHHHHHHHHHHHhcCCC--- Confidence 888876211 12233445444444 334444443332 Q ss_pred ehhhhhhccccCCc---cccchhhhhh-----------hheecccCCCC Q lcl|NC_011020. 114 HSVTETLGASHGPS---PFDRTWRVFG-----------LIRLGIRPPKN 148 (148) Q Consensus 114 ~si~ETmGaTqfsS---~f~dsWRvqG-----------LI~lGiRppr~ 148 (148) +.+|+||+|+ +|++|+.-.+ +-+||++.+|- T Consensus 78 ----d~~G~tq~S~TaG~ys~S~T~~np~G~lylt~~e~~~LGl~~~r~ 122 (140) T protein:vir:97 78 ----QGEPMSQESQSALGYTWSGTYLVPGGGLFIKDNELKRLGLKKQRY 122 (140) T ss_pred ----CCCcceeeeeeccchhheeeeecCCCCceeChHHHHHhCCCCCce Confidence 4456666554 5655533322 45788888776 No 11 >protein:vir:107851 Length: 175 # NCBI annotation: gp31 # Family: family:all:274 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024704;genbank:gi:48696941;genbank:GeneID:2845939 Probab=22.58 E-value=0.79 Score=21.16 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=60.9 Q ss_pred CccccchhhhhHhhhhcccccccccccccccCCCceeeeccCCCCcccCCeeeEEecCCCCCccc-chhhcCceeeeeec Q lcl|NC_011020. 1 MAGKLPIVGEVVLPILRGHEDLSNPISTVPSLAGAHVGTWVEDIDSRTFPLITVRRVGGTRSPEH-PTLFTQPVVEMTAY 79 (148) Q Consensus 1 ma~klprvq~VvlpiLR~~~~l~~pi~~vp~~~~~~v~tWv~didyR~fP~vniRRigG~R~~~~-P~~~~lPViEmtaY 79 (148) ...+..+..+---.||.++-+|.+-|....+--.|.||| |..| -.|=-.||.--.+. -+.-+-|.+=+|.- T Consensus 78 ~~~~~~~~~~~~~~~L~~tG~L~~Si~~~~~~~~v~vGt---n~~Y-----AaiHqfGg~~~~~~~v~iPaRpfLG~s~~ 149 (175) T protein:vir:10 78 ELTAAASRRKAGLMILQDSGQMAASVSTDHDDNSAVIGS---NKEY-----AAIHQFGGQAGRGLKVTIPARPWLPVTAD 149 (175) T ss_pred hhhhhhhhhccCCCcceechhhhhhhheeecCCEEEEec---Chhh-----hhhhhcccccCCCCccccCCccccCCCcc Confidence 111122333445568888889999999887777777777 5444 33444577522221 14445566666655 Q ss_pred cccCchhhHHHHHHHHHHHHHHHhhc Q lcl|NC_011020. 80 SAADLPTTEQMYEDALEVLYRAARLQ 105 (148) Q Consensus 80 ~~egl~e~eelYe~~LevLY~Avr~Q 105 (148) .....-+.+++.+..++.|-+|++.- T Consensus 150 d~~~~e~~~~Il~~~~~~l~~~~~~~ 175 (175) T protein:vir:10 150 GELQPEAVEPVLNTILRHLMDAANRR 175 (175) T ss_pred cccchHHHHHHHHHHHHHHHHHhccC Confidence 33333456889999999999999877 Done!