BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011020.1_cdsid_YP_001994559.1 [gene=12] [protein=gp12] [protein_id=YP_001994559.1] [location=6843..8531] (562 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 1117 0.0 gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp1... 957 0.0 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 859 0.0 gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp1... 820 0.0 gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: pre... 780 0.0 gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp... 772 0.0 gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp1... 763 0.0 gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hyp... 225 1e-60 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 87 7e-19 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 86 2e-18 gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp... 52 2e-08 gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp... 52 2e-08 gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2... 52 2e-08 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 38 3e-04 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 38 4e-04 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 37 8e-04 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 36 0.001 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 34 0.005 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 33 0.009 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 33 0.011 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 33 0.012 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 32 0.016 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 32 0.019 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 31 0.033 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 31 0.040 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 31 0.045 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 31 0.048 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 31 0.050 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 30 0.065 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 30 0.070 gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: put... 28 0.22 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 28 0.27 gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hyp... 28 0.38 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 28 0.42 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 27 0.50 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 27 0.70 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 27 0.86 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 27 0.87 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 26 1.3 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 26 1.3 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 26 1.3 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 26 1.3 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 26 1.4 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 26 1.4 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 25 1.7 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 25 1.9 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 25 2.0 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 25 2.0 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 25 2.7 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 25 3.2 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 25 3.4 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 1117 bits (2890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/562 (94%), Positives = 549/562 (97%) Query: 1 MAVHYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNAPDGSGPFIPT 60 MAVHYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVN+P G GPF+PT Sbjct: 1 MAVHYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNSPAGDGPFVPT 60 Query: 61 MEQARFLAWWYAVDENGKYVYREGTFRRMKGHGKDPLVAAMSLAELCGPVAFSHFDEAGN 120 +EQARF+AWWYAVD+ GKY YREGT RRMKG GKDP++ A++LAELCGPVAFSHFD+ GN Sbjct: 61 LEQARFIAWWYAVDDQGKYAYREGTLRRMKGWGKDPMIGALALAELCGPVAFSHFDDNGN 120 Query: 121 PVGRVRHAAWVTIAAVSQDQTKNTFSLFPIMVSKKLKAEHGLSVNRFIIYSEIGGRLEAA 180 PVG+ RHAAWVT+AAVSQ QT NTF LFPIMVSKKLK E+GLSVNRFIIYSEIGGRLEAA Sbjct: 121 PVGKPRHAAWVTVAAVSQQQTVNTFGLFPIMVSKKLKTEYGLSVNRFIIYSEIGGRLEAA 180 Query: 181 TASPASMEGNRPTFVIQNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVPGARTLSICNAH 240 TASPASMEGNRPTFV+QNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVPGARTLSICNAH Sbjct: 181 TASPASMEGNRPTFVVQNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVPGARTLSICNAH 240 Query: 241 RPGDDTVAEMAYLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQ 300 RPGDDTVAEM+YLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQ Sbjct: 241 RPGDDTVAEMSYLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQ 300 Query: 301 LMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHD 360 LMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHD Sbjct: 301 LMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHD 360 Query: 361 INLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVWVPEKYEGHKVPRQDVDA 420 INLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVWVPEKYEGHKVPRQDVDA Sbjct: 361 INLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVWVPEKYEGHKVPRQDVDA 420 Query: 421 YVRSMFEKYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALD 480 YVRSMFEKYDVVGMRADVKEFEQSVDAWGQDFRRKL+INASPGNPVAFDMRGQQKRFALD Sbjct: 421 YVRSMFEKYDVVGMRADVKEFEQSVDAWGQDFRRKLRINASPGNPVAFDMRGQQKRFALD 480 Query: 481 CERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLA 540 CERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLA Sbjct: 481 CERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLA 540 Query: 541 WGSRQDFLLSKSNTGKGAGLLR 562 WGSRQDFLLSKSNTGKGAGLLR Sbjct: 541 WGSRQDFLLSKSNTGKGAGLLR 562 >gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp10 # Family: family:all:1551 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID :920069 Length = 562 Score = 957 bits (2475), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/553 (81%), Positives = 502/553 (90%) Query: 1 MAVHYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNAPDGSGPFIPT 60 MAVHYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVN+P G GPF+PT Sbjct: 1 MAVHYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNSPAGDGPFVPT 60 Query: 61 MEQARFLAWWYAVDENGKYVYREGTFRRMKGHGKDPLVAAMSLAELCGPVAFSHFDEAGN 120 +EQARF+AWWYAVD+ GKY YREGT RRMKG GKDP++ A++LAELCGPVAFSHFD+ GN Sbjct: 61 LEQARFIAWWYAVDDQGKYAYREGTLRRMKGWGKDPMIGALALAELCGPVAFSHFDDNGN 120 Query: 121 PVGRVRHAAWVTIAAVSQDQTKNTFSLFPIMVSKKLKAEHGLSVNRFIIYSEIGGRLEAA 180 PVG+ RHAAW+TIAAVSQDQTKNTFSLFPIMVSK+L++E+GLSVNRFIIYSEIGGRLEAA Sbjct: 121 PVGKARHAAWITIAAVSQDQTKNTFSLFPIMVSKRLRSEYGLSVNRFIIYSEIGGRLEAA 180 Query: 181 TASPASMEGNRPTFVIQNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVPGARTLSICNAH 240 TASPASMEGNRPTFV+QNETQWWGVGPGGEVN GHQMAEVIEGNMTKVPGARTLSICNAH Sbjct: 181 TASPASMEGNRPTFVVQNETQWWGVGPGGEVNGGHQMAEVIEGNMTKVPGARTLSICNAH 240 Query: 241 RPGDDTVAEMAYLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQ 300 RPGDDTVAE +Y NWLDILAG+ IDTG+LYDALEAPADTPVSEIP PS+D GY AGVA+ Sbjct: 241 RPGDDTVAERSYQNWLDILAGEVIDTGILYDALEAPADTPVSEIPPPSEDEPGYTAGVAK 300 Query: 301 LMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHD 360 L++GL +ARGDSIWLPLDDILMSVL+AKND+IESRRKFLNQVNA+E+SW+AP++WD+ H Sbjct: 301 LLEGLGVARGDSIWLPLDDILMSVLSAKNDIIESRRKFLNQVNASEDSWLAPADWDKCHS 360 Query: 361 INLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVWVPEKYEGHKVPRQDVDA 420 +L PL KG++ITLGFDGS SND TAL ACRVEDGA+FL+ W PE Y +VP++DVDA Sbjct: 361 TSLRPLTKGDKITLGFDGSKSNDWTALVACRVEDGAVFLIDYWNPENYPSGEVPKEDVDA 420 Query: 421 YVRSMFEKYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALD 480 VRSM +KY+VV RADVKEFE VD WGQ FRR +K+NASPGNPVAFDMRGQ KRFALD Sbjct: 421 VVRSMKDKYEVVAFRADVKEFEAYVDQWGQLFRRTIKVNASPGNPVAFDMRGQTKRFALD 480 Query: 481 CERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLA 540 CERF DAVL E+ HDNNPV+KAHITNAH+HPTIYDAISIRKP K SKRKIDAAV +VLA Sbjct: 481 CERFADAVLEQELVHDNNPVMKAHITNAHRHPTIYDAISIRKPSKASKRKIDAAVCSVLA 540 Query: 541 WGSRQDFLLSKSN 553 +G+RQD+L+SK N Sbjct: 541 FGARQDYLMSKKN 553 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/436 (96%), Positives = 425/436 (97%) Query: 127 HAAWVTIAAVSQDQTKNTFSLFPIMVSKKLKAEHGLSVNRFIIYSEIGGRLEAATASPAS 186 H V+ + + TKNTFSLFPIMVSKKLK E+GLSVNRFIIYSEIGGRLEAATASPAS Sbjct: 468 HLFQVSRSRILTHNTKNTFSLFPIMVSKKLKTEYGLSVNRFIIYSEIGGRLEAATASPAS 527 Query: 187 MEGNRPTFVIQNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVPGARTLSICNAHRPGDDT 246 MEGNRPTFV+QNETQWWGVGPGGEVNDGHQMAEVIEGNMTKV GARTLSICNAHRPGDDT Sbjct: 528 MEGNRPTFVVQNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVDGARTLSICNAHRPGDDT 587 Query: 247 VAEMAYLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQLMKGLE 306 VAEM+YLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQLMKGLE Sbjct: 588 VAEMSYLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQLMKGLE 647 Query: 307 IARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHDINLPPL 366 IARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHDINLPPL Sbjct: 648 IARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHDINLPPL 707 Query: 367 RKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVWVPEKYEGHKVPRQDVDAYVRSMF 426 RKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVWVPEKYEGHKVPRQDVDAYVRSMF Sbjct: 708 RKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVWVPEKYEGHKVPRQDVDAYVRSMF 767 Query: 427 EKYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALDCERFRD 486 EKYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALDCERFRD Sbjct: 768 EKYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALDCERFRD 827 Query: 487 AVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQD 546 AVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQD Sbjct: 828 AVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQD 887 Query: 547 FLLSKSNTGKGAGLLR 562 FLLSKSNTGKGAGLLR Sbjct: 888 FLLSKSNTGKGAGLLR 903 Score = 273 bits (699), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 120/140 (85%), Positives = 131/140 (93%) Query: 1 MAVHYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNAPDGSGPFIPT 60 MAVHYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVN+P G GPF+PT Sbjct: 1 MAVHYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNSPAGDGPFVPT 60 Query: 61 MEQARFLAWWYAVDENGKYVYREGTFRRMKGHGKDPLVAAMSLAELCGPVAFSHFDEAGN 120 +EQARF+AWWYAVD+ GKY YREGT RRMKG GKDP++ A++LAELCGPVAFSHFD+ GN Sbjct: 61 LEQARFIAWWYAVDDQGKYAYREGTLRRMKGWGKDPMIGALALAELCGPVAFSHFDDNGN 120 Query: 121 PVGRVRHAAWVTIAAVSQDQ 140 PVG+ RHAAWVTIAAVSQDQ Sbjct: 121 PVGKTRHAAWVTIAAVSQDQ 140 >gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817601;genbank:gi:29566031;genbank:GeneID :1259225 Length = 566 Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/562 (68%), Positives = 460/562 (81%), Gaps = 4/562 (0%) Query: 4 HYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNAPDGS---GPFIPT 60 H+PE L P+P H+ GPTW + DG W+LPEKTLGW +++W YV P G PF+PT Sbjct: 6 HHPE-LAPSPPHVIGPTWARTVDGGWYLPEKTLGWGVLNWWAAYVKTPGGEHAGSPFMPT 64 Query: 61 MEQARFLAWWYAVDENGKYVYREGTFRRMKGHGKDPLVAAMSLAELCGPVAFSHFDEAGN 120 +EQARF WWYAVD+NG YVYREG RR+KG GKDP AA+SLAELCGPVAFSHFD GN Sbjct: 65 LEQARFTLWWYAVDDNGNYVYREGILRRLKGWGKDPFAAALSLAELCGPVAFSHFDADGN 124 Query: 121 PVGRVRHAAWVTIAAVSQDQTKNTFSLFPIMVSKKLKAEHGLSVNRFIIYSEIGGRLEAA 180 PVG+ RHAAW+TIAAVSQDQTKNTFSLFPIM+SK+LK ++GL VNRFIIYSE GGR+EAA Sbjct: 125 PVGKPRHAAWITIAAVSQDQTKNTFSLFPIMISKQLKEDYGLLVNRFIIYSEAGGRIEAA 184 Query: 181 TASPASMEGNRPTFVIQNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVPGARTLSICNAH 240 T+SPAS+EGNRPTFVI+NETQWWG GPGGE+NDGH M IEGN+TK+PGAR L+ICNAH Sbjct: 185 TSSPASVEGNRPTFVIENETQWWGAGPGGEINDGHAMHGAIEGNLTKIPGARRLAICNAH 244 Query: 241 RPGDDTVAEMAYLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQ 300 PG+DTVAE + + DIL+G A+DTG+LYDALEAPADTPVSEIP +DPEGY+ G+ + Sbjct: 245 IPGNDTVAEKDWDAYQDILSGKAVDTGMLYDALEAPADTPVSEIPSQREDPEGYQLGIKK 304 Query: 301 LMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHD 360 L +G+EIARGDS WLP+D+ILMS+L KN + ESRRKFLNQ+NA E+SWI+P+EW+R Sbjct: 305 LREGIEIARGDSYWLPVDEILMSILDIKNSITESRRKFLNQINAHEDSWISPNEWNRCQP 364 Query: 361 INLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVWVPEKYEGHKVPRQDVDA 420 + PL KG+RITLGFDGS SND TAL ACRV+DG LFL+KVW PE YE +VPR+DVDA Sbjct: 365 STIQPLTKGDRITLGFDGSKSNDWTALVACRVDDGMLFLIKVWNPEDYESGEVPREDVDA 424 Query: 421 YVRSMFEKYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALD 480 VRSMF YDVV RADVKEFE VD WG+DFR+K+++NA+PGNP+AFDMRGQ KRFA D Sbjct: 425 TVRSMFASYDVVAFRADVKEFEAYVDQWGRDFRKKIQVNATPGNPIAFDMRGQTKRFAFD 484 Query: 481 CERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLA 540 CERF DAV+ EV HD NPVLK H+ NA +HPT YDAI+IRK K+S +KIDAAV AVLA Sbjct: 485 CERFLDAVIEQEVFHDGNPVLKQHVCNARRHPTTYDAIAIRKASKDSGKKIDAAVCAVLA 544 Query: 541 WGSRQDFLLSKSNTGKGAGLLR 562 +G+RQDFL+SK N + A +++ Sbjct: 545 FGARQDFLMSKRNRTRRAVMIK 566 >gi|16679|lcl|protein:vir:4222 Length: 593 # NCBI annotation: predicted 66.2Kd protein # Family: family:all:1551 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039677;swissprot:sw:q05219;genbank:gi:962 5443;uniprot:Q05219;genbank:GeneID:2942932;interpro:IPR0 05021 Length = 593 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/579 (64%), Positives = 447/579 (77%), Gaps = 33/579 (5%) Query: 4 HYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNAP------------ 51 H+PE L P+P HI GP+W++ DG W+LPEKTLGW ++ WL EYVN P Sbjct: 6 HHPE-LAPSPPHIIGPSWQKTVDGEWYLPEKTLGWGVLKWLSEYVNTPGGHDDPNRLATL 64 Query: 52 ---------DGSGPFIPTMEQARFLAWWYAVDENGKYVYREGTFRRMKGHGKDPLVAAMS 102 D FIPT EQ R + WWYAVD+ G+Y+YREG RR+KG GKDP AA+ Sbjct: 65 IALSEAGLLDNENMFIPTDEQVRLVLWWYAVDDQGQYIYREGVIRRLKGWGKDPFTAALC 124 Query: 103 LAELCGPVAFSHFDEAGNPVGRVRHAAWVTIAAVSQDQTKNTFSLFPIMVSKKLKAEHGL 162 LAELCGPVAFSHFD GNPVG+ R AAW+T+AAVSQDQTKNTFSLFP+M+SKKLKAE+GL Sbjct: 125 LAELCGPVAFSHFDADGNPVGKPRSAAWITVAAVSQDQTKNTFSLFPVMISKKLKAEYGL 184 Query: 163 SVNRFIIYSEIGGRLEAATASPASMEGNRPTFVIQNETQWWGVGPGGEVNDGHQMAEVIE 222 VNRFIIYS GGR+EAAT+SPASMEGNRPTFV+QNETQWWG GP G+VN+GH MAEVIE Sbjct: 185 DVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMAEVIE 244 Query: 223 GNMTKVPGARTLSICNAHRPGDDTVAEMAYLNWLDILAGDAIDTGVLYDALEAPADTPVS 282 GNMTKV G+RTLSICNAH PG +TVAE A+ + + AGD++DTG++YDALEAPADTPVS Sbjct: 245 GNMTKVEGSRTLSICNAHIPGTETVAEKAWDEYQKVQAGDSVDTGMMYDALEAPADTPVS 304 Query: 283 EIPFPSDDPEGYEAGVAQLMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQV 342 EIP +DPEG+E G+ +L +GL IARGDS WLP+DDI+ S+L+ KN + ESRRKFLNQV Sbjct: 305 EIPPQKEDPEGFEKGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNPITESRRKFLNQV 364 Query: 343 NATEESWIAPSEWDR----------NHDINLPPLRKGERITLGFDGSLSNDHTALTACRV 392 NA E+SW++P EW+R H PL++G+RITLGFDGS SND TAL CRV Sbjct: 365 NAAEDSWLSPQEWNRCQVDLAKYLDKHGREFAPLQRGDRITLGFDGSKSNDWTALVGCRV 424 Query: 393 EDGALFLVKVWVPEKYEGHKVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWGQDF 452 DG LF++ +W P+KY G +VPR+DVDA V S F YDVV RADVKEFE VD WG+ + Sbjct: 425 SDGLLFVIDIWDPQKY-GGEVPREDVDAKVHSAFAHYDVVAFRADVKEFEAYVDQWGRTY 483 Query: 453 RRKLKINASPGNPVAFDMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHP 512 ++KLK+NASP NPVAFDMRGQQKRFA DCER DAVL GEV HD NPVL+ H+ NA +HP Sbjct: 484 KKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKRHP 543 Query: 513 TIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQDFLLSK 551 T YDAI+IRK K+S +KIDAAV AVLA+G+RQD+L+SK Sbjct: 544 TNYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSK 582 >gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655592;genbank:gi:109392463;genbank:GeneI D:4156949 Length = 594 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/580 (64%), Positives = 446/580 (76%), Gaps = 34/580 (5%) Query: 4 HYPESLLPAPSHIQGPTWRQYEDGSWFLPEKTLGWQIISWLFEYVNAPDG---------- 53 HYPE L P+P HI GPTW++ DG+W LPEKTLGW +++WL EYVN P G Sbjct: 6 HYPE-LAPSPPHIIGPTWQKTTDGAWHLPEKTLGWGVLAWLSEYVNTPGGHDDPNRLRFL 64 Query: 54 -----------SGPFIPTMEQARFLAWWYAVDENGKYVYREGTFRRMKGHGKDPLVAAMS 102 FIPT EQ R + WWYAVD+ G+Y+YREG RR+KG GKDP AA+ Sbjct: 65 IELSEAGIPFNENMFIPTDEQVRLVLWWYAVDDKGQYIYREGVIRRLKGWGKDPFTAALC 124 Query: 103 LAELCGPVAFSHFDEAGNPVGRVRHAAWVTIAAVSQDQTKNTFSLFPIMVSKKLKAEHGL 162 LAELCGPVAFSHFD GNPVG+ R+A W+T+AAVSQDQTKNTFSLFP+M+SKKLKAE+ L Sbjct: 125 LAELCGPVAFSHFDADGNPVGKRRNAPWITVAAVSQDQTKNTFSLFPVMISKKLKAEYNL 184 Query: 163 SVNRFIIYSEIG-GRLEAATASPASMEGNRPTFVIQNETQWWGVGPGGEVNDGHQMAEVI 221 VNRFIIYS+ G GR+EAAT+SPA+MEGNRPTFV+QNETQWWG GP G+VN+GH MAEVI Sbjct: 185 DVNRFIIYSDGGAGRIEAATSSPAAMEGNRPTFVVQNETQWWGQGPDGKVNEGHAMAEVI 244 Query: 222 EGNMTKVPGARTLSICNAHRPGDDTVAEMAYLNWLDILAGDAIDTGVLYDALEAPADTPV 281 EGNMTKV G+RTLSICNAH PG +TV E +Y NWLDI ++DTG+LYDALEAPADTP+ Sbjct: 245 EGNMTKVEGSRTLSICNAHIPGTETVGEKSYNNWLDIATDKSVDTGLLYDALEAPADTPI 304 Query: 282 SEIPFPSDDPEGYEAGVAQLMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQ 341 SEIP +DPEG+E G+ +L +G+ IARGDS WLP+DDI+ S+L+ KN + ESRRKFLNQ Sbjct: 305 SEIPSQKEDPEGFERGIEKLREGVLIARGDSTWLPIDDIIKSILSTKNSITESRRKFLNQ 364 Query: 342 VNATEESWIAPSEWDR----------NHDINLPPLRKGERITLGFDGSLSNDHTALTACR 391 VNA E+SW++P EW+R PL++G+RITLGFDGS SND TAL CR Sbjct: 365 VNAAEDSWLSPQEWNRCFADPEKYLERRGHEFVPLQRGDRITLGFDGSKSNDWTALVGCR 424 Query: 392 VEDGALFLVKVWVPEKYEGHKVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWGQD 451 V DG LF++ +W P+KY G +VPR+DVDA V S F+ YDVV RADVKEFE VD+WG+ Sbjct: 425 VSDGLLFVIDIWDPQKY-GGEVPREDVDAKVHSAFKHYDVVAFRADVKEFEAYVDSWGRT 483 Query: 452 FRRKLKINASPGNPVAFDMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQH 511 +++KLK+NASP NPVAFDMRGQQKRFA DCER DAVL GEV HD N VL H+ NA +H Sbjct: 484 YKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNAVLSQHVMNAKRH 543 Query: 512 PTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQDFLLSK 551 PT YDAI+IRK K+S +KIDAAV AVLA+G+RQD+L+SK Sbjct: 544 PTTYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSK 583 >gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID: 1261617 Length = 595 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/587 (62%), Positives = 446/587 (75%), Gaps = 36/587 (6%) Query: 4 HYPESLLPAPSHIQGPTWRQYEDGSWFLPE--KTLGWQIISWLFEYVNAPDG-------- 53 H+PE L P+P HI GP+W++ DG W LP+ TLGW ++ WL EYVN P G Sbjct: 6 HHPE-LAPSPPHIIGPSWQKTVDGDWHLPDPKMTLGWGVLKWLSEYVNTPGGHDDPNRLK 64 Query: 54 -------------SGPFIPTMEQARFLAWWYAVDENGKYVYREGTFRRMKGHGKDPLVAA 100 FIPT EQ R + WWYAVDE G+YVYREG RR+KG GKDP AA Sbjct: 65 VLISLSEAGLLENENMFIPTDEQVRLVLWWYAVDEKGQYVYREGVIRRLKGWGKDPFTAA 124 Query: 101 MSLAELCGPVAFSHFDEAGNPVGRVRHAAWVTIAAVSQDQTKNTFSLFPIMVSKKLKAEH 160 + LAELCGPVAFSHFDE G +G+ R AAW+T+AAVSQDQTKNTFSLFP+M+SKKLK E+ Sbjct: 125 LCLAELCGPVAFSHFDETGQAIGKPRPAAWITVAAVSQDQTKNTFSLFPVMISKKLKTEY 184 Query: 161 GLSVNRFIIYSEIGGRLEAATASPASMEGNRPTFVIQNETQWWGVGPGGEVNDGHQMAEV 220 GL VNRFIIYS GGR+EAAT+SPASMEGNRPTFV+QNETQWWG GP G+ N+GH MAEV Sbjct: 185 GLDVNRFIIYSAAGGRIEAATSSPASMEGNRPTFVVQNETQWWGQGPDGKANEGHAMAEV 244 Query: 221 IEGNMTKVPGARTLSICNAHRPGDDTVAEMAYLNWLDILAGDAIDTGVLYDALEAPADTP 280 IEGNMTKV G+RTLSICNAH PG +TVAE AY+ W D+ +G ++DTG++YDALEAPADTP Sbjct: 245 IEGNMTKVEGSRTLSICNAHIPGTETVAEKAYVEWQDVQSGKSVDTGMMYDALEAPADTP 304 Query: 281 VSEIPFPSDDPEGYEAGVAQLMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLN 340 +SEIP ++P+G+ G+ +L +GL IARGDS WLP+DDI+ S+L+ KN + ESRRKFLN Sbjct: 305 ISEIPSEKENPDGFREGIEKLREGLLIARGDSTWLPIDDIIKSILSTKNSITESRRKFLN 364 Query: 341 QVNATEESWIAPSEWDR----------NHDINLPPLRKGERITLGFDGSLSNDHTALTAC 390 QVNA E+SW++P EW+R L PL +G++ITLGFDGS SND TAL C Sbjct: 365 QVNAAEDSWLSPQEWNRCFADPDKYLDKMGFELAPLDRGQKITLGFDGSKSNDWTALVGC 424 Query: 391 RVEDGALFLVKVWVPEKYEGHKVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWGQ 450 RV DG LF++ +W P+KY G +VPR+ VDA V S F +YDVV RADVKEFE VD+WG+ Sbjct: 425 RVSDGLLFVIDIWDPQKY-GGEVPREFVDAAVHSAFSRYDVVAFRADVKEFEAYVDSWGR 483 Query: 451 DFRRKLKINASPGNPVAFDMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQ 510 +++KLK+NASP NPVAFDMRGQQKRFA DCER DAVL GEV HD NPVL+ H+ NA + Sbjct: 484 TYKKKLKVNASPNNPVAFDMRGQQKRFAFDCERLEDAVLEGEVWHDGNPVLRQHVLNAKR 543 Query: 511 HPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQDFLLS-KSNTGK 556 HPT YDAI+IRK K+S +KIDAAV AVLA+G+RQD+L+S K+ TG+ Sbjct: 544 HPTTYDAIAIRKVTKDSSKKIDAAVCAVLAFGARQDYLMSKKARTGR 590 >gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:1551 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958275;genbank:gi:41057249;genbank:GeneID :2732854 Length = 536 Score = 225 bits (574), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 173/533 (32%), Positives = 254/533 (47%), Gaps = 59/533 (11%) Query: 52 DGSGPFIPTMEQARFLAWWYAVDE-NGKYVYREGTFRRMKGHGKDPLVAAMSLAELCGPV 110 D PFIPT EQA FL +Y + G+ V G R +G GK P V A++LAE C V Sbjct: 11 DDGEPFIPTQEQAEFLLRFYELHPVTGRRVIHRGLLSRPRGWGKSPFVGAIALAEACADV 70 Query: 111 AFSHFDEAGNPVGRVRHAA---WVTIAAVSQDQTKNTF-SLFPIMVSKKLKAEHGLSVNR 166 +D G P+GR H+ V IAAV++ QT NT+ L + L ++GL V Sbjct: 71 VADGWDAYGEPIGRPWHSVRTPLVRIAAVTEAQTDNTWIPLLEMARGGSLSTDYGLDVLD 130 Query: 167 FIIYSEIGGRLEAATASPASMEGNRPTFVIQNETQWWGVGPGGEVNDGHQMAEVIEGNMT 226 +IY G + T+S +S++G+ F ++T+ W E N G ++A+ + N Sbjct: 131 TVIYLP-RGEISPITSSASSVKGDPACFASLDQTEEW-----RESNGGIRLAKTMRFNAA 184 Query: 227 KVPGARTLSICNAHRPGDDTVAEMAYLNWLDILAGDAIDTGVLYDALEAPADTPVSEIPF 286 K+ G + NA PG+ +VAE + ++ I+ G + G+L D EAP DT +S+ Sbjct: 185 KL-GGSIIETPNAFTPGEGSVAENSAADYQAIIDGRSRARGILVDHREAPGDTDMSD--- 240 Query: 287 PSDDPEGYEAGVAQLMKGLEIARGDSI----------------WLPLDDILMSVLTAKND 330 L+ GL A GDS W P++ + ND Sbjct: 241 -----------EQSLVAGLRYAYGDSSDHPDGCVLHDPPCGPGWSPIERLTGEFWDTSND 289 Query: 331 VIESRRKFLNQVNATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLS-----NDHT 385 + R FLNQ+ ++W++ E + D+ ++ G+RI LGFDGS D T Sbjct: 290 PQDLRADFLNQITHASDAWLSQPEVRASSDLG-KVVQPGDRIVLGFDGSRKRSRGVTDAT 348 Query: 386 ALTACRVEDGALFLVKVW-VPEKYE--------GHKVPRQDVDAYVRSMFEKYDVVGMRA 436 AL CR+ DG LF + VW P + E +VP +V A V F YDVVGM A Sbjct: 349 ALIGCRLSDGHLFTLGVWEQPPRLELGPDGRPVEWQVPVVEVLAAVAEAFATYDVVGMYA 408 Query: 437 DVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALDC-ERFRDAVLAGEVKH 495 D ++E V W F +L++ + +P+ + M G + + E+F A+ E+ H Sbjct: 409 DPAKWESHVADWEAAFGPRLQVKVTRNHPIEWWMTGGRSTLIVRALEKFHTALTECELTH 468 Query: 496 DNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQDFL 548 D + L H+ N+ + T I I K +S KIDAAV AVLAW R D + Sbjct: 469 DGSSALVRHLLNSRRRKT-RSGIQIMKENPDSPNKIDAAVAAVLAWQCRLDAI 520 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 86.7 bits (213), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 94/207 (45%), Gaps = 14/207 (6%) Query: 339 LNQVNATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALF 398 L+Q +W+ WD + PL G+ + GFDGS D TAL ACRV D +F Sbjct: 293 LSQFVRGASTWLPHGLWDSLAADDDDPLEPGDEVVCGFDGSWKGDSTALVACRVRDLRVF 352 Query: 399 LVKVWVPEKYEGH-KVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWGQDFRRKLK 457 ++ W + H +VP DV + S + Y V + AD +E+++D + Sbjct: 353 VLGHWEAPADDIHWRVPMADVREALHSALDTYRVRNLVADPYRWEETLDNLEAE---GFP 409 Query: 458 INASPGNPVAFDMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDA 517 + A P N +A + Q + DA G + HD NP L HI NA A Sbjct: 410 VEAFPTNSLARMVPATQAVY--------DACRDGRLSHDGNPALARHIGNAVLKEDARGA 461 Query: 518 ISIRKPGKESKRKIDAAVTAVLA-WGS 543 I K S+RKID AV VLA WG+ Sbjct: 462 -RITKEFGASRRKIDLAVAMVLAVWGA 487 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 85.5 bits (210), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 93/203 (45%), Gaps = 14/203 (6%) Query: 339 LNQVNATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALF 398 L+Q +W+ WD + + PL G+ + LGFDGS D TAL ACR+ D +F Sbjct: 290 LSQFVRGASTWLPHGLWD-SLAADDDPLEPGDEVVLGFDGSWKGDSTALVACRIRDLKVF 348 Query: 399 LVKVWVPEKYEGH-KVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWGQDFRRKLK 457 ++ W + H +VP DV + + + Y V + AD +E+++D D Sbjct: 349 VLGHWEAPADDAHWRVPMADVREELHTALDVYRVRNLVADPYRWEETLDNLEAD---GFP 405 Query: 458 INASPGNPVAFDMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDA 517 + A P N +A + Q + DA G + HD NP L HI NA A Sbjct: 406 VEAFPTNSLARMVPATQAVY--------DACRDGRLSHDGNPALGRHIGNAVLKEDARGA 457 Query: 518 ISIRKPGKESKRKIDAAVTAVLA 540 I K S+RKID AV VLA Sbjct: 458 -RITKEHASSRRKIDLAVAMVLA 479 >gi|9695|lcl|protein:vir:102601 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654998;genbank:gi:109392188;genbank:GeneI D:4157223 Length = 545 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 17/183 (9%) Query: 369 GERITLGFDGSLSNDHTALTACRVEDGALFLVKVW-VPEKYEGHKVPRQDVDAYVRSMFE 427 G +T GFDGS D TA+ + G L+ W PE E +VP +V A V M Sbjct: 346 GAFVTAGFDGSRWRDATAVVVTEIATGRQMLLGCWERPENVEEWEVPEHEVTALVVDMMS 405 Query: 428 KYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALDCERFRDA 487 +++V M D ++ ++ AW F ++ A G G +R A + + DA Sbjct: 406 RFEVWRMYCDPWGWDSTIAAWAGRFPDRVVEWAVGGG-------GSLRRVAAATQGYADA 458 Query: 488 VLAGEVKHDNN---PVLKAHITNA-HQHPTIYDAIS-----IRKPGKESKRKIDAAVTAV 538 + G+ N P H+ +A + + D ++K K DAA+ + Sbjct: 459 LATGDAALAANVWRPKFVEHMGHAGRRELKLVDDTGQPLWVMQKQDGRLADKFDAAMAGM 518 Query: 539 LAW 541 L+W Sbjct: 519 LSW 521 Score = 40.8 bits (94), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 81/209 (38%), Gaps = 27/209 (12%) Query: 77 GKYVYREGTFRRMKGHGKDPLVAAMSLAELC--GPVAFSHFDEAGNPVGRVRHAAWVTIA 134 G+ + KG K A + EL PV FD AGNPVGR + + + Sbjct: 65 GRRRFERAGVELRKGVAKTEFAAWICGVELHPEAPVRCDGFDAAGNPVGRPVRSPVIPMM 124 Query: 135 AVSQDQTKNTFSLFPIMVSKKLKAEHGLSVNRFIIYSEIGGRLE----------AATASP 184 AV+++Q F ++ K E+G V+ F I E RL A + +P Sbjct: 125 AVTEEQVSEL--AFGVL---KYILENGPDVDLFDISKERIVRLSPSGGEDGFAVAVSNAP 179 Query: 185 ASMEGNRPTFVIQNETQWWGVGPGGEVNDGHQMA-EVIEGNMTKVPGAR--TLSICNAHR 241 S +G R TF +E P H+ A E + NM K P TL A + Sbjct: 180 GSRDGARTTFQHFDE-------PHRLFMPRHRDAHETMLQNMPKRPMEDPWTLYTSTAGQ 232 Query: 242 PGDDTVAEMAYLNWLDILAGDAIDTGVLY 270 PG ++ E I G+ D + + Sbjct: 233 PGQGSIEEDVLAEAESIARGERQDPSLFF 261 >gi|8440|lcl|protein:vir:105818 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655763;genbank:gi:109522086;genbank:GeneI D:4157626 Length = 545 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 17/183 (9%) Query: 369 GERITLGFDGSLSNDHTALTACRVEDGALFLVKVW-VPEKYEGHKVPRQDVDAYVRSMFE 427 G +T GFDGS D TA+ + G L+ W PE E +VP +V A V M Sbjct: 346 GAFVTAGFDGSRWRDATAVVVTEIATGRQMLLGCWERPENVEEWEVPEHEVTALVVDMMS 405 Query: 428 KYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALDCERFRDA 487 +++V M D ++ ++ AW F ++ A G G +R A + + DA Sbjct: 406 RFEVWRMYCDPWGWDSTIAAWAGRFPDRVVEWAVGGG-------GSLRRVAAATQGYADA 458 Query: 488 VLAGEVKHDNN---PVLKAHITNA-HQHPTIYDAIS-----IRKPGKESKRKIDAAVTAV 538 + G+ N P H+ +A + + D ++K K DAA+ + Sbjct: 459 LATGDAALAANVWRPKFVEHMGHAGRRELKLVDDTGQPLWVMQKQDGRLADKFDAAMAGM 518 Query: 539 LAW 541 L+W Sbjct: 519 LSW 521 Score = 40.8 bits (94), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 81/209 (38%), Gaps = 27/209 (12%) Query: 77 GKYVYREGTFRRMKGHGKDPLVAAMSLAELC--GPVAFSHFDEAGNPVGRVRHAAWVTIA 134 G+ + KG K A + EL PV FD AGNPVGR + + + Sbjct: 65 GRRRFERAGVELRKGVAKTEFAAWICGVELHPEAPVRCDGFDAAGNPVGRPVRSPVIPMM 124 Query: 135 AVSQDQTKNTFSLFPIMVSKKLKAEHGLSVNRFIIYSEIGGRLE----------AATASP 184 AV+++Q F ++ K E+G V+ F I E RL A + +P Sbjct: 125 AVTEEQVSEL--AFGVL---KYILENGPDVDLFDISKERIVRLSPSGGEDGFAVAVSNAP 179 Query: 185 ASMEGNRPTFVIQNETQWWGVGPGGEVNDGHQMA-EVIEGNMTKVPGAR--TLSICNAHR 241 S +G R TF +E P H+ A E + NM K P TL A + Sbjct: 180 GSRDGARTTFQHFDE-------PHRLFMPRHRDAHETMLQNMPKRPMEDPWTLYTSTAGQ 232 Query: 242 PGDDTVAEMAYLNWLDILAGDAIDTGVLY 270 PG ++ E I G+ D + + Sbjct: 233 PGQGSIEEDVLAEAESIARGERQDPSLFF 261 >gi|18273|lcl|protein:vir:7986 Length: 545 # NCBI annotation: gp2 # Family: family:all:1551 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817340;genbank:gi:29565768;genbank:GeneID :1259002 Length = 545 Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 17/183 (9%) Query: 369 GERITLGFDGSLSNDHTALTACRVEDGALFLVKVW-VPEKYEGHKVPRQDVDAYVRSMFE 427 G +T GFDGS D TA+ + G L+ W PE E +VP +V A V M Sbjct: 346 GAFVTAGFDGSRWRDATAVVVTEIATGRQMLLGCWERPENVEEWEVPEHEVTALVVDMMS 405 Query: 428 KYDVVGMRADVKEFEQSVDAWGQDFRRKLKINASPGNPVAFDMRGQQKRFALDCERFRDA 487 +++V M D ++ ++ AW F ++ A G G +R A + + DA Sbjct: 406 RFEVWRMYCDPWGWDSTIAAWAGRFPDRVVEWAVGGG-------GSLRRVAAATQGYADA 458 Query: 488 VLAGEVKHDNN---PVLKAHITNA-HQHPTIYDAIS-----IRKPGKESKRKIDAAVTAV 538 + G+ N P H+ +A + + D ++K K DAA+ + Sbjct: 459 LATGDAVLAANVWRPKFVEHMGHAGRRELKLVDDTGQPLWVMQKQDGRLADKFDAAMAGM 518 Query: 539 LAW 541 L+W Sbjct: 519 LSW 521 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 17/204 (8%) Query: 77 GKYVYREGTFRRMKGHGKDPLVAAMSLAELC--GPVAFSHFDEAGNPVGRVRHAAWVTIA 134 G+ + KG K A + EL PV FD AGNPVGR + + + Sbjct: 65 GRRRFERAGVELRKGVAKTEFAAWICGVELHPEAPVRCDGFDAAGNPVGRPVRSPVIPMM 124 Query: 135 AVSQDQTKN-TFSLFPIMVSKKLKAE-HGLSVNRFIIYSEIGGRLEAATA---SPASMEG 189 AV+++Q F + ++ A+ +S R + S GG A A +P S +G Sbjct: 125 AVTEEQVSELAFGVLKYILENGPDADLFDISKERIVRLSPSGGEDGFAVAVSNAPGSRDG 184 Query: 190 NRPTFVIQNETQWWGVGPGGEVNDGHQMA-EVIEGNMTKVPGAR--TLSICNAHRPGDDT 246 R TF +E P H+ A E + NM K P TL A +PG + Sbjct: 185 ARTTFQHFDE-------PHRLFMPRHRDAHETMLQNMPKRPMEDPWTLYTSTAGQPGQGS 237 Query: 247 VAEMAYLNWLDILAGDAIDTGVLY 270 + E I G+ D + + Sbjct: 238 IEEDVLAEAESIARGERQDPSLFF 261 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 37.7 bits (86), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 54/254 (21%) Query: 336 RKFLNQVNATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSNDHTALTACRVEDG 395 ++F N E S+I +N+DI +G T+G+D S + D TA A D Sbjct: 212 KRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDN 271 Query: 396 --ALFLVKVWVPE---KYEGHKVP-------------------RQDVDAYVRSMFEKYDV 431 L W+P+ +Y K+P QDV ++ M E Y V Sbjct: 272 GKVAVLTHSWIPKHKVEYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVV 331 Query: 432 VGM---RADVKEFEQSVDAWG--QDFRRKLKINASPGNPVAFDMRGQQKRFALDCERFRD 486 + RA+ + Q + +G + R+ + SP + ++ Sbjct: 332 EKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA-----------------LKDLKE 374 Query: 487 AVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESK-RKIDAAVTAVLAWGSRQ 545 L G++ +NNP++K +I N D P K+S+ RKID + + Sbjct: 375 MFLDGKIIFNNNPLMKWYINNVQLK---LDRNGNWLPSKQSRYRKIDGFAAFLNTYTD-- 429 Query: 546 DFLLSKSNTGKGAG 559 +++K + KG G Sbjct: 430 --IMNKVVSDKGEG 441 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 54/254 (21%) Query: 336 RKFLNQVNATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSNDHTALTACRVEDG 395 ++F N E S+I +N+DI +G T+G+D S + D TA A D Sbjct: 322 KRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFALDN 381 Query: 396 --ALFLVKVWVPE---KYEGHKVP-------------------RQDVDAYVRSMFEKYDV 431 L W+P+ +Y K+P QDV ++ M E Y V Sbjct: 382 GKVAVLTHSWIPKHKVEYSNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKMNEHYVV 441 Query: 432 VGM---RADVKEFEQSVDAWG--QDFRRKLKINASPGNPVAFDMRGQQKRFALDCERFRD 486 + RA+ + Q + +G + R+ + SP + ++ Sbjct: 442 EKITYDRANAFKLNQELKNYGFETEETRQGALTLSPA-----------------LKDLKE 484 Query: 487 AVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESK-RKIDAAVTAVLAWGSRQ 545 L G++ +NNP++K +I N D P K+S+ RKID + + Sbjct: 485 MFLDGKIIFNNNPLMKWYINNVQLK---LDRNGNWLPSKQSRYRKIDGFAAFLNTYTD-- 539 Query: 546 DFLLSKSNTGKGAG 559 +++K + KG G Sbjct: 540 --IMNKVVSDKGEG 551 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 36.6 bits (83), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 99/465 (21%), Positives = 174/465 (37%), Gaps = 80/465 (17%) Query: 118 AGNPVG-RVRHAAWVTIAAVSQDQTKNTFSLFPIMVSKKLKAEHGLSVNRFIIYSEIGGR 176 AG +G + +AA V V +DQ K F + +M SK LK + + I + + Sbjct: 124 AGYEIGAKGYNAAEVYTLGVERDQAKIVFEEWELMASKPLKKRFKFT-QKVIKHKKSNSF 182 Query: 177 LEAATASPASM-EGNRPTFVIQNETQWWGVGPGGEVNDGHQMAEVIEGNMTKVPGARTLS 235 ++ + +G P + +E + P +M +V++ M + Sbjct: 183 IKHLSKKAGKTGDGKNPQMAVIDE---YHAHPNS------KMYDVMKSGMMARTEPLLVI 233 Query: 236 ICNAHRPGDDTVAEMAYLNWLDILAGDAIDTGVLYDALEAP-ADTPVSEIPFPSDDPE-- 292 I A ++T YL+ IL G + E D P E + +P Sbjct: 234 ITTAGEDYEETACYYEYLDCCSILDGTFENEKYFVMICELEDEDDPFDEKAWIKANPVLC 293 Query: 293 GYEAGVAQLMKGLEIARGDSIWLPLDDILMSVLTAKNDVIESRRKFLNQ-----VNATEE 347 YE G+ + + +A+ S N+ E R +FL + V A E+ Sbjct: 294 TYEEGIESMRQNANLAKNTS----------------NE--EKRIEFLTKNCNIYVAAGEK 335 Query: 348 SWIAPSEWDR-NHDINLPPLRKGERITLGFDGSLSNDHT--ALTACRVEDG----ALFLV 400 ++ W +I L R G +G D S S D T A +++G ALF Sbjct: 336 KYVDVEFWKACKENITLEKFR-GHDCYIGMDLSKSGDLTSIAFEFPYLDEGIRKYALF-G 393 Query: 401 KVWVPEKYEGHKVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWG-----QDFRRK 455 K ++P + K+ +V + S EK ++ A+ Q VD W + ++ Sbjct: 394 KSFIPAEVVKEKMKTDNVPYNIWSSKEKGWLIKTEANEG---QIVDLWAILNTIESIVKE 450 Query: 456 LKINASPGNPVAFDMRG------QQKRFALDCER--------------FRDAVLAGEVKH 495 ++N V++D G + +R +C FRD + ++ H Sbjct: 451 YELNVIE---VSYDPHGAAMLVSELERRDYNCVECGQSCAKLNEATVNFRDLMKIKQIVH 507 Query: 496 DNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLA 540 D N ++ + NA + + I I K K ++ID + + A Sbjct: 508 DENNLMTWCVQNAEKDTNSFGEIKISK--KSRFKRIDPLASCIFA 550 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 466 VAFDMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLKAHITNA 508 V ++R + + +RFR+ VL+G++ HD+NPVL I NA Sbjct: 469 VMVEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNA 511 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 111/490 (22%), Positives = 173/490 (35%), Gaps = 99/490 (20%) Query: 90 KGHGKDPLVAAMSLAELCGPVAFSHFDEAGNPVGRVRHAAWVTIAAVSQDQTKNTFSLFP 149 + +GK L+A + LA L GP A + + A+S++Q F+L Sbjct: 56 RKNGKTGLIAGILLAHLVGPEAVQN--------------TQIVSGALSREQAAIVFNLAV 101 Query: 150 IMVSKKLKAE---HGLSVNRFIIYSEIGGRLEAATASPASMEGNRPTFVIQNETQWWGVG 206 MV+ K + H + +I +A +A + G P I +ET G Sbjct: 102 KMVNLNPKLQEIVHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVR-G 160 Query: 207 PGGEVNDGHQMAEVIEGNMTKVPGARTLSICNAHRPGDDTVAEMAYLNWLDILAGDAI-- 264 P + D A+ N L I + + +D A++ + W+D DA+ Sbjct: 161 PQDDFIDAITTAQGAHEN--------PLLIVISTQAAND--ADLLSI-WID----DAVKS 205 Query: 265 -DTGVLYDALEAPADTPVSEI-----------PFPSDDPEGYEAGVAQLMKGLEIARGDS 312 D ++ EAP D +S+ F S+ +A A M E Sbjct: 206 KDPHIVCHVYEAPKDADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENT---- 261 Query: 313 IWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHDINLPPLRKGERI 372 R LNQ +T +I+ S W+ ++ P+ + Sbjct: 262 ---------------------FRNLNLNQRVSTVSPFISRSVWELCGEM---PINTPRKW 297 Query: 373 TLGFDGSLSNDHTALT-ACRVEDGALFLVK-VWVPEKY--EGHKVPRQDVDAYVRS---- 424 G D S ND TAL A +DG + W P+K E K R D +VR Sbjct: 298 YAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQKTLEERTKTDRAPYDVWVREGLLR 357 Query: 425 ---------MFEKYDVVGMRADVKEFEQSVDAWGQD-FRRKLKINASPGNPVAFDMRGQQ 474 F D+ + D + D W D FR+ V F + Sbjct: 358 TTPGASVDYSFVVADIAEIIGDFDLTSMAFDRWRIDQFRKDADAIGLSLPLVEFGQGFKD 417 Query: 475 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGK-ESKRKIDA 533 A+D +L G V+H +PVL NA + DA RK K ++ +ID Sbjct: 418 MGPAVDT--LESLMLNGRVRHGMHPVLTMCAVNA---VVVKDAAGNRKLDKSKATGRIDG 472 Query: 534 AVTAVLAWGS 543 V ++ G+ Sbjct: 473 MVAMTMSVGA 482 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 33.1 bits (74), Expect = 0.009, Method: Compositional matrix adjust. Identities = 110/490 (22%), Positives = 174/490 (35%), Gaps = 99/490 (20%) Query: 90 KGHGKDPLVAAMSLAELCGPVAFSHFDEAGNPVGRVRHAAWVTIAAVSQDQTKNTFSLFP 149 + +GK L+A + LA L GP A + + A+S++Q F+L Sbjct: 56 RKNGKTGLIAGILLAHLVGPEAVQN--------------TQIVSGALSREQAAIVFNLAV 101 Query: 150 IMVSKKLKAEHGLSVN---RFIIYSEIGGRLEAATASPASMEGNRPTFVIQNETQWWGVG 206 MV+ K + + + + +I +A +A + G P I +ET G Sbjct: 102 KMVNLNPKLQEIVHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVR-G 160 Query: 207 PGGEVNDGHQMAEVIEGNMTKVPGARTLSICNAHRPGDDTVAEMAYLNWLDILAGDAI-- 264 P + D A+ N L I + + +D A++ + W+D DA+ Sbjct: 161 PQDDFIDAITTAQGAHEN--------PLLIVISTQAAND--ADLLSI-WID----DAVKS 205 Query: 265 -DTGVLYDALEAPADTPVSEI-----------PFPSDDPEGYEAGVAQLMKGLEIARGDS 312 D ++ EAP D +S+ F S+ +A A M E Sbjct: 206 KDPHIVCHVYEAPKDADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENT---- 261 Query: 313 IWLPLDDILMSVLTAKNDVIESRRKFLNQVNATEESWIAPSEWDRNHDINLPPLRKGERI 372 R LNQ +T +I+ S W+ ++ P+ + Sbjct: 262 ---------------------FRNLNLNQRVSTVSPFISRSVWELCGEM---PINTPRKW 297 Query: 373 TLGFDGSLSNDHTALT-ACRVEDGALFLVK-VWVPEKY--EGHKVPRQDVDAYVRS---- 424 G D S ND TAL A +DG + W P+K E K R D +VR Sbjct: 298 YAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQKTLEERTKTDRAPYDVWVREGLLR 357 Query: 425 ---------MFEKYDVVGMRADVKEFEQSVDAWGQD-FRRKLKINASPGNPVAFDMRGQQ 474 F D+ + D + D W D FR+ V F + Sbjct: 358 TTPGASVDYSFVVADIAEIIGDFDLTSIAFDRWRIDQFRKDADAIGLSLPLVEFGQGFKD 417 Query: 475 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGK-ESKRKIDA 533 A+D +L G V+H +PVL NA + DA RK K ++ +ID Sbjct: 418 MGPAVDT--LESLMLNGRVRHGMHPVLTMCAVNA---VVVKDAAGNRKLDKSKATGRIDG 472 Query: 534 AVTAVLAWGS 543 V ++ G+ Sbjct: 473 MVAMTMSVGA 482 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 32.7 bits (73), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 487 AVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQD 546 A+ AG HD NPV+ I+N D +R + ++ KID AV ++A G + Sbjct: 492 AIEAGRFHHDGNPVMTWCISNVIGKHIPGDDDVVRPIKQGNENKIDGAVALIMAIG--RC 549 Query: 547 FLLSKSNT 554 L K +T Sbjct: 550 MLFEKEDT 557 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 32.7 bits (73), Expect = 0.012, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 43/289 (14%) Query: 258 ILAGDAIDTGVLYDALEAPADTPVSEIPFPSDDPEGYEAGVAQLMKGLEIARGDSIWLPL 317 I++ +D V +E P T + + EGY VA+ EI + +S W+ Sbjct: 247 IISTAGMDLNVPMHTIEYPYITKILDGEITD---EGYFGYVAEQDNEEEI-KDESNWIKS 302 Query: 318 DDIL-MSVLTAK-NDVIESRRKF------LNQV---------NATEESWIAPSEWDRNHD 360 + IL + L K D + +RR+ +N+V ++EES+I W+ Sbjct: 303 NPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQ- 361 Query: 361 INLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKV-WVPEKYEGHKVPRQDVD 419 I+ P K R+ LG D +D A+++ + D +L +V KY ++D Sbjct: 362 IDKPDTYK-RRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSFVATKYGLTAKEKRDGV 420 Query: 420 AYVRSMFEKY-DVVGMRADVKEFEQSVDAWGQD-FRRKLKINASPGNPVAFD-------- 469 +Y + Y ++ + + V + E+ ++ + + + ++N +P F Sbjct: 421 SYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTLLTMIEK 480 Query: 470 -------MRGQQKRFALD--CERFRDAVLAGEVKHDNNPVLKAHITNAH 509 + Q L+ ++FRD + G++KH NP+L + NA+ Sbjct: 481 RHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAY 529 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 32.3 bits (72), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/186 (19%), Positives = 78/186 (41%), Gaps = 23/186 (12%) Query: 344 ATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSNDHTALTACRVEDGALFLVKVW 403 ATE+S++ W + P +R G+R +G D ++D A++ ++G +L Sbjct: 326 ATEDSYLDFDAWKAAELTDKPDIR-GQRAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYA 384 Query: 404 VPEKYEG--HKVPRQDVDAYVRSMFEKYDVVGMRADVKEFEQSVDAWGQDF--RRKLKIN 459 G +K+ +D + ++ + + + + ++ V W +DF R + + Sbjct: 385 FVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGIIDNDR-VYEWLEDFIERNDIDVQ 443 Query: 460 ASPGNPVAF-----------------DMRGQQKRFALDCERFRDAVLAGEVKHDNNPVLK 502 +P F +R ++ ++FRD V+ G +KH +N +++ Sbjct: 444 GIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQ 503 Query: 503 AHITNA 508 A NA Sbjct: 504 AAAMNA 509 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 32.0 bits (71), Expect = 0.019, Method: Compositional matrix adjust. Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 36/293 (12%) Query: 281 VSEIPFPSDDPEG--YEAGVAQLMKGLEIARGDSIWLPLDDI----------LMSVLTAK 328 VS+I PS + E Y + +L K +I + +S W+ + I + S L Sbjct: 252 VSDILDPSKNVENDDYFVMICELEKNDDI-KDESNWIKANPIVATYEEGLEGIRSDLKVA 310 Query: 329 NDVIESRRKFLNQ-----VNATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSND 383 D E R FL + V+ + ++ S+W + L G + +G D S++ D Sbjct: 311 LDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQKCEVDTLDF--SGATLWIGGDLSMTTD 368 Query: 384 HTALTACRVEDGALFLV--KVWVPEKYEGHKVPRQDV--DAYVRSMF------EKYDVVG 433 T++ ++D F+V ++PE K+ V D + + E D Sbjct: 369 LTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVDYTI 428 Query: 434 MRADVKEFEQSVDAWGQDFRR----KLKINASPGNPVAFDMRGQQKRFALDCERFRDAVL 489 + + ++ F + + D+ + L N V ++ + ++ + FR+ V Sbjct: 429 VESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNFREKVY 488 Query: 490 AGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWG 542 +VKH+ +PVL + NA + I I K K SK +ID A + A+ Sbjct: 489 EKKVKHNGDPVLFWALNNAVVKMDDQENIMISK--KISKNRIDPAAAVLNAFA 539 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 31.2 bits (69), Expect = 0.033, Method: Compositional matrix adjust. Identities = 65/292 (22%), Positives = 122/292 (41%), Gaps = 36/292 (12%) Query: 281 VSEIPFPSDDPEG--YEAGVAQLMKGLEIARGDSIWLPLDDI----------LMSVLTAK 328 VS+I PS + E Y + +L K +I + +S W+ + I + S L Sbjct: 252 VSDILDPSKNVENDDYFVMICELEKNDDI-KDESNWIKANPIVATYEEGLEGIRSDLKVA 310 Query: 329 NDVIESRRKFLNQ-----VNATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSND 383 D E R FL + V+ + ++ S+W + +++ G + +G D S++ D Sbjct: 311 LDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQK-CEVDTXDF-SGATLWIGGDLSMTTD 368 Query: 384 HTALTACRVEDGALFLV--KVWVPEKYEGHKVPRQDV--DAYVRSMF------EKYDVVG 433 T++ ++D F+V ++PE K+ V D + + E D Sbjct: 369 LTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVDYTI 428 Query: 434 MRADVKEFEQSVDAWGQDFRR----KLKINASPGNPVAFDMRGQQKRFALDCERFRDAVL 489 + + ++ F + + D+ + L N V ++ + ++ + FR+ V Sbjct: 429 VESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNFREKVY 488 Query: 490 AGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAW 541 +VKH+ +PVL + NA + I I K K SK +ID A + A+ Sbjct: 489 EKKVKHNGDPVLFWALNNAVVKMDDQENIMISK--KISKNRIDPAAAVLNAF 538 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 30.8 bits (68), Expect = 0.040, Method: Compositional matrix adjust. Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 37/295 (12%) Query: 281 VSEIPFPSDDPEG--YEAGVAQLMKGLEIARGDSIWLPLDDI----------LMSVLTAK 328 VS+I PS + E Y + +L K +I + +S W+ + I + S L Sbjct: 252 VSDILDPSKNVENDDYFVMICELEKNDDI-KDESNWIKANPIVATYEEGLEGIRSDLKVA 310 Query: 329 NDVIESRRKFLNQ-----VNATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSND 383 D E R FL + V+ + ++ S+W + +++ G + +G D S++ D Sbjct: 311 LDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQK-CEVDTFDF-SGATLWIGGDLSMTTD 368 Query: 384 HTALTACRVEDGALFLV--KVWVPEKYEGHKVPRQDV--DAYVRSMF------EKYDVVG 433 T++ ++D F+V ++PE K+ V D + + E D Sbjct: 369 LTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVDYTI 428 Query: 434 MRADVKEFEQSVDAWGQDFRR----KLKINASPGNPVAFDMRGQQKRFALDCERFRDAVL 489 + + ++ F + + D+ + L N V ++ + ++ + FR+ V Sbjct: 429 VESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNFREKVY 488 Query: 490 AGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSR 544 +VKH+ +PVL + NA + I I K K SK +ID A AVL SR Sbjct: 489 EKKVKHNGDPVLFWALNNAVVKMDDQENIMISK--KISKNRIDPA-AAVLNAFSR 540 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 30.8 bits (68), Expect = 0.045, Method: Compositional matrix adjust. Identities = 65/293 (22%), Positives = 122/293 (41%), Gaps = 36/293 (12%) Query: 281 VSEIPFPSDDPEG--YEAGVAQLMKGLEIARGDSIWLPLDDI----------LMSVLTAK 328 VS+I PS + E Y + +L K +I + +S W+ + I + S L Sbjct: 252 VSDILDPSKNVENDDYFVMICELEKNDDI-KDESNWIKANPIVATYEEGLEGIRSDLKVA 310 Query: 329 NDVIESRRKFLNQ-----VNATEESWIAPSEWDRNHDINLPPLRKGERITLGFDGSLSND 383 D E R FL + V+ + ++ S+W + +++ G + +G D S++ D Sbjct: 311 LDRPEKMRAFLTKNMNIWVDKKDNGYMDMSKWQK-CEVDTFDF-SGATLWIGGDLSMTTD 368 Query: 384 HTALTACRVEDGALFLV--KVWVPEKYEGHKVPRQDV--DAYVRSMF------EKYDVVG 433 T++ ++D F+V ++PE K+ V D + + E D Sbjct: 369 LTSVGWVGMDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVDYTI 428 Query: 434 MRADVKEFEQSVDAWGQDFRR----KLKINASPGNPVAFDMRGQQKRFALDCERFRDAVL 489 + + ++ F + + D+ + L N V ++ + ++ + FR+ V Sbjct: 429 VESWIENFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNFREKVY 488 Query: 490 AGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWG 542 +VKH+ +PVL + NA + I I K K SK +ID A + A+ Sbjct: 489 EKKVKHNGDPVLFWALNNAVVKMDDQENIMISK--KISKNRIDPAAAVLNAFA 539 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 30.8 bits (68), Expect = 0.048, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Query: 487 AVLAGEVKHDNNPVLKAHITN--AHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWG 542 A+ AG HD NP++ ++N P D + K G ++ KID AV ++A G Sbjct: 495 AITAGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDN--KIDGAVALIMAIG 550 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 30.8 bits (68), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Query: 321 LMSVLTAKNDVIESRRKFLNQ-----VNATEESWIAPSEWDRNHDINLPPLRKGERITLG 375 L S L +V E R FL + V+ + ++ ++W R +P L +G + LG Sbjct: 293 LRSALKVALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKW-RACSGEIPDL-QGLPVYLG 350 Query: 376 FDGSLSNDHTALTACRVEDGALFL 399 D S++ D T++ V+DG ++ Sbjct: 351 LDLSMTTDLTSVGYVAVQDGFFYV 374 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 30.4 bits (67), Expect = 0.065, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 487 AVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKE-SKRKIDAAVTAVLAWGSRQ 545 A+ +G HD NP++ I N TI + KP KE ++ KID AV ++A G + Sbjct: 499 AIESGRFHHDGNPIMTWCIGNV-VGKTIPGNDDVVKPIKEQAENKIDGAVALIMAVG--R 555 Query: 546 DFLLSKSNT 554 L K +T Sbjct: 556 AMLYEKEDT 564 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 30.0 bits (66), Expect = 0.070, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Query: 487 AVLAGEVKHDNNPVLKAHITN--AHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSR 544 A+ +G HD NP++ ++N P D + K G ++ KID AV ++A G Sbjct: 495 AITSGRFHHDGNPIMTWCVSNVIGKNLPGNDDVVRPIKQGNDN--KIDGAVALIMAVGRA 552 Query: 545 Q--DFLLSKSNTGKGAGL 560 D + S+S +G G+ Sbjct: 553 MLADRVDSESIYDQGVGV 570 >gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150161;swissprot:trembl:q94m50;genbank:gi :15088772;goa:Q94M50;uniprot:Q94M50;genbank:GeneID:95597 6 Length = 436 Score = 28.5 bits (62), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 372 ITLGFDGSLSNDHTALTACRVE-DGALFLVKVWV--PEKYEGHKVPRQ---DVDAYVRSM 425 I+ DG TA A + G + L+ W P K P Q ++ AY+RS+ Sbjct: 260 ISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMRSV 319 Query: 426 FEKYDVVGMRADVKEFE 442 EKY V ++ + E Sbjct: 320 IEKYRVQALQYTIDSAE 336 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 28.1 bits (61), Expect = 0.27, Method: Compositional matrix adjust. Identities = 55/249 (22%), Positives = 84/249 (33%), Gaps = 44/249 (17%) Query: 329 NDVIESRRKFLNQVNATEESWIAPSEWDRNHDINLPPLR-KGERITLGFDGSLSNDHTA- 386 ND+ + K LN + + ++ W + D NL KGE LG D + D A Sbjct: 317 NDI---KTKHLNMWVSGKTAFFNMDHWAKAEDKNLKLSNFKGEESHLGLDLAAKLDLNAG 373 Query: 387 --LTACRVEDGALFLV---KVWVPEKYEGHKVPRQDVDAYVRSMFEKY------------ 429 + +E + K WVPE +D + ++Y Sbjct: 374 VPVFTREIEGKRHYYCVGSKFWVPED------TVHSIDPKIAKTAKRYQKWVNMQWAGGS 427 Query: 430 ---DVVGMRADVKEFEQSV-DAWGQDFRRKLKINASPGNPVAF------------DMRGQ 473 D G AD +E SV D +D R I P A ++R Sbjct: 428 LLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPTGATALSHELADNGFEPINIRQD 487 Query: 474 QKRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDA 533 + + A+ G HD NP+L I+N +R + + KID Sbjct: 488 FTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLGTFVPGSDDRVRPTKGDKQSKIDG 547 Query: 534 AVTAVLAWG 542 A ++A G Sbjct: 548 ATALLMAIG 556 >gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hypothetical protein # Family: family:all:1095 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690680;genbank:geneid:6329148;genbank:gi :22855074;interpro:IPR009341;interpro:IPR011855;uniprot :O48449;genbank:GeneID:955320 Length = 177 Score = 27.7 bits (60), Expect = 0.38, Method: Compositional matrix adjust. Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 31 LPEKTLGWQIISWLFEYVNAPDGSGPFIPTME 62 +PE + Q + +LF+ ++A GS P P + Sbjct: 1 MPETPIMGQDVKYLFQSIDAATGSAPLFPAYQ 32 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 27.7 bits (60), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Query: 487 AVLAGEVKHDNNPVLKAHITNA--HQHPTIYDAISIRKPGKE-SKRKIDAAVTAVLAWG 542 A+ +G HD NP++ I N P D + KP KE ++ KID AV ++ G Sbjct: 499 AIESGRFHHDGNPIMTWCIGNVVGKNMPGNDDLV---KPVKEQAENKIDGAVALIMTIG 554 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 27.3 bits (59), Expect = 0.50, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 255 WLDILAGDAIDTGVLYDALEAPA 277 WL + GD +D V+YD +EA A Sbjct: 734 WLKVTEGDVLDFDVVYDDIEADA 756 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 26.9 bits (58), Expect = 0.70, Method: Compositional matrix adjust. Identities = 9/21 (42%), Positives = 17/21 (80%) Query: 367 RKGERITLGFDGSLSNDHTAL 387 R+G+R+ +G D S+ +D+TA+ Sbjct: 383 RRGKRVYVGLDASMFSDNTAI 403 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 26.6 bits (57), Expect = 0.86, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 16/20 (80%) Query: 368 KGERITLGFDGSLSNDHTAL 387 KG+R+ +G D S+ +D+TAL Sbjct: 384 KGKRVYVGLDASMFSDNTAL 403 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 26.6 bits (57), Expect = 0.87, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 255 WLDILAGDAIDTGVLYDALEA 275 WL + GD +D V+YD +EA Sbjct: 403 WLKVTEGDVLDFDVVYDDIEA 423 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 475 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAA 534 K + + FR V ++H++N +L + NA D + I K K +++KID Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINK--KMNRQKIDPI 534 Query: 535 VTAVLAW 541 ++ + A+ Sbjct: 535 ISIITAF 541 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 475 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAA 534 K + + FR V ++H++N +L + NA D + I K K +++KID Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINK--KMNRQKIDPI 534 Query: 535 VTAVLAW 541 ++ + A+ Sbjct: 535 ISIITAF 541 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 475 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAA 534 K + + FR V ++H++N +L + NA D + I K K +++KID Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINK--KMNRQKIDPI 534 Query: 535 VTAVLAW 541 ++ + A+ Sbjct: 535 ISIITAF 541 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 475 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAA 534 K + + FR V ++H++N +L + NA D + I K K +++KID Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINK--KMNRQKIDPI 534 Query: 535 VTAVLAW 541 ++ + A+ Sbjct: 535 ISIITAF 541 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 475 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAA 534 K + + FR V ++H++N +L + NA D + I K K +++KID Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINK--KMNRQKIDPI 534 Query: 535 VTAVLAW 541 ++ + A+ Sbjct: 535 ISIITAF 541 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 475 KRFALDCERFRDAVLAGEVKHDNNPVLKAHITNAHQHPTIYDAISIRKPGKESKRKIDAA 534 K + + FR V ++H++N +L + NA D + I K K +++KID Sbjct: 477 KALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVKINK--KMNRQKIDPI 534 Query: 535 VTAVLAW 541 ++ + A+ Sbjct: 535 ISIITAF 541 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 26/174 (14%) Query: 401 KVWVPEKYEGHKVPR--QDVDAYVR----SMFEKYDVVGMRADVKEFEQSV-DAWGQDFR 453 K WVPE P+ + D Y + E D G AD +E S+ D G++ Sbjct: 392 KFWVPEDTIHTTDPKLLKTADRYQKFYEMGALEATD--GAEADYREILASILDMQGEN-- 447 Query: 454 RKLKINASPGNPVAF------------DMRGQQKRFALDCERFRDAVLAGEVKHDNNPVL 501 R +I+ P A D+R + + A+ G HD NP+L Sbjct: 448 RIDEIDIDPAGATALRHQLEDYGFTVVDIRQDYTNMSPAMKELEAALAGGRFHHDGNPIL 507 Query: 502 KAHITNAHQHPTIYDAISIRKPGKESKRKIDAAVTAVLAWGSRQDFLLSKSNTG 555 I+N +R +++ KID A TA+ +R +L++S+ G Sbjct: 508 TWCISNVIGKFIPGSDDLVRPTKGDNQSKIDGA-TALFNAMTRA--MLNESSGG 558 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 369 GERITLGFDGSLSNDHTALTACRVEDGALFLV--KVWVP 405 G + +GFD S +ND T+L G+ F + W+P Sbjct: 372 GRDVFIGFDYSQTNDDTSLAFVFPHSGSKFHLYQHSWIP 410 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 369 GERITLGFDGSLSNDHTAL 387 G + +GFDGS +ND+T+ Sbjct: 395 GRDVFIGFDGSQTNDNTSF 413 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 369 GERITLGFDGSLSNDHTAL 387 G + +GFDGS +ND+T+ Sbjct: 394 GRDVFIGFDGSQTNDNTSF 412 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 19/33 (57%) Query: 369 GERITLGFDGSLSNDHTALTACRVEDGALFLVK 401 G + +GFD S+ +D+TAL+ D F ++ Sbjct: 385 GHEVFIGFDYSMFSDNTALSFVYPYDDGKFHIE 417 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 24.6 bits (52), Expect = 3.2, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 16/20 (80%) Query: 368 KGERITLGFDGSLSNDHTAL 387 +G+R+ +G D S+ +D+TA+ Sbjct: 130 RGKRVYVGLDASMFSDNTAI 149 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 16/20 (80%) Query: 368 KGERITLGFDGSLSNDHTAL 387 +G+R+ +G D S+ +D+TA+ Sbjct: 386 RGKRVYVGLDASMFSDNTAI 405 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.135 0.419 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 277,562 Number of Sequences: 514 Number of extensions: 13611 Number of successful extensions: 120 Number of sequences better than 100.0: 55 Number of HSP's better than 100.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 69 length of query: 562 length of database: 206,069 effective HSP length: 76 effective length of query: 486 effective length of database: 167,005 effective search space: 81164430 effective search space used: 81164430 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)