Query lcl|NC_010762.1_cdsid_YP_001936040.1 [gene=12] [protein=hypothetical protein] [protein_id=YP_001936040.1] [location=9414..9857] Match_columns 147 No_of_seqs 4 out of 7 Neff 1.8 Searched_HMMs 1612 Date Thu Nov 7 13:16:08 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_12 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_12_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:99925 Length: 147 100.0 1E-97 6E-101 552.3 12.3 147 1-147 1-147 (147) 2 protein:vir:2508 Length: 139 # 100.0 1.3E-85 8.1E-89 485.9 11.0 139 5-145 1-139 (139) 3 protein:vir:98426 Length: 131 95.3 0.00043 2.7E-07 39.0 8.8 130 3-142 1-131 (131) 4 protein:vir:9579 Length: 111 # 85.6 0.021 1.3E-05 29.8 7.1 111 6-138 1-111 (111) 5 protein:vir:94768 Length: 111 83.6 0.059 3.7E-05 27.3 8.7 111 6-138 1-111 (111) 6 protein:vir:9764 Length: 111 # 81.3 0.031 1.9E-05 28.8 6.3 107 10-134 1-111 (111) 7 protein:vir:4348 Length: 121 # 80.9 0.022 1.4E-05 29.7 5.4 113 6-139 1-121 (121) 8 protein:vir:1643 Length: 111 # 78.8 0.11 6.9E-05 25.8 8.9 111 6-138 1-111 (111) 9 protein:vir:1892 Length: 121 # 63.2 0.26 0.00016 23.8 6.8 113 6-139 1-121 (121) 10 protein:vir:97070 Length: 118 22.4 0.95 0.00059 20.7 2.7 107 1-138 1-118 (118) No 1 >protein:vir:99925 Length: 147 # NCBI annotation: gp12 # Family: family:all:11707 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655529;genbank:gi:109392299;genbank:GeneID:4157094 Probab=100.00 E-value=1e-97 Score=552.29 Aligned_cols=147 Identities=98% Similarity=1.504 Sum_probs=146.9 Q ss_pred CCCCeeecCCchhHHHHHHHHHHHHHhcCCCccceeecCCCCCcceEEEecCCCCcceehhheeEEeeeeccceeeeccc Q lcl|NC_010762. 1 MTAPEMVGPTMEPAIACRAYLMRRLDDRGIDLSVGATPPAGKPTRYVLVNQVDSRRRGPVADYLIRTRVYNADAYECGQH 80 (147) Q Consensus 1 m~ap~~l~PpvgP~~A~r~YL~~eLa~R~npLpVg~tpP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~n 80 (147) |+||||++|+|||++|||+||||||||||||||||+|||+||||||+|||||||++++||+|||||+||||+|+|||||| T Consensus 1 ~~~~~~~~P~v~P~~A~RaYLl~~L~~Rg~~L~VgatpPeG~Pt~Yallsr~~s~r~~~l~~~LIRvRVyd~D~~~~~r~ 80 (147) T protein:vir:99 1 MTAPEMVGPTMEPAIACRAYLMRRLDDRGIDLSVGATPPDGKPTRYVLVNQVDSRRRGPVADYLIRTRVYNADAYECGQH 80 (147) T ss_pred CCCccccCCcchhHHHHHHHHHHHHhhcCCcccccccCCCCCCcceEEEecCCCCceeehhheeEEEEeecchhhhhccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHHHHHhhhhceeccCCCccEEEecccccccccccCCCCCCcccccceeeeeeeeeeeccCCCC Q lcl|NC_010762. 81 ATLLHAALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQAISVFWTVALKPIEGNTP 147 (147) Q Consensus 81 A~LLHrllLhA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~~~sVFWTigLkP~~~~~~ 147 (147) |||||++||||+||||||||+|+|||||++|+|||||||||++|||||+++||||||||||||||.| T Consensus 81 A~LLHa~LlgA~h~kvv~Pd~G~vWiTGa~H~~GPad~~DD~~v~LfG~q~aVFWTi~LkP~~~~~~ 147 (147) T protein:vir:99 81 ATLLHAALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTTLFGQAISVFWTVALKPIEGNSP 147 (147) T ss_pred hhHHHHHHhhhhcceeeecCCCceEeecccccccccccCCCCCccccchhhheeeeeeeeeccCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:2508 Length: 139 # NCBI annotation: hypothetical protein # Family: family:all:11707 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569749;genbank:gi:18496899;genbank:GeneID:932297 Probab=100.00 E-value=1.3e-85 Score=485.94 Aligned_cols=139 Identities=40% Similarity=0.774 Sum_probs=135.7 Q ss_pred eeecCCchhHHHHHHHHHHHHHhcCCCccceeecCCCCCcceEEEecCCCCcceehhheeEEeeeeccceeeeccchhHH Q lcl|NC_010762. 5 EMVGPTMEPAIACRAYLMRRLDDRGIDLSVGATPPAGKPTRYVLVNQVDSRRRGPVADYLIRTRVYNADAYECGQHATLL 84 (147) Q Consensus 5 ~~l~PpvgP~~A~r~YL~~eLa~R~npLpVg~tpP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LL 84 (147) .-|+|+|||++|||+||||||||||||||||++||+||||||+|||||||++++||+|||||+||||+|+|||||||||| T Consensus 1 ~~lvP~v~P~~A~RaYLl~~L~~Rg~~L~Vga~pPeG~Pt~Yallsr~~s~r~~~l~~~LIRvRVyd~D~~~~~r~A~LL 80 (139) T protein:vir:25 1 MTLVPSVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIRVRVFDSDVVRLERNADLL 80 (139) T ss_pred CcccCccchHHHHHHHHHHHHhhcCCcccccccCCCCCcceeEEEecCCCCceeehhheeEEEEeecchhhhhccchhHH Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhhhhceeccCCCccEEEecccccccccccCCCCCCcccccceeeeeeeeeeeccCC Q lcl|NC_010762. 85 HAALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQAISVFWTVALKPIEGN 145 (147) Q Consensus 85 HrllLhA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~~~sVFWTigLkP~~~~ 145 (147) |++||||+|||||||| |+|||||++|+||||++ ||++|||||+++||||||||||-... T Consensus 81 Ha~LlgA~h~kvv~Pe-G~vWiTGa~H~~GPa~~-DD~~v~LfG~q~aVFWTi~LkP~r~~ 139 (139) T protein:vir:25 81 HALLCGANHRKVHTPE-GDVWITGAAHHYGPADL-DDPDVPLFGMQAAVFWTIGLKPARRS 139 (139) T ss_pred HHHHhhhhcceeeccC-CceEeeccccccCCccc-CCCccccccchhheeeeecccccccC Confidence 9999999999999997 99999999999999977 99999999999999999999998776 No 3 >protein:vir:98426 Length: 131 # NCBI annotation: ORF6 # Family: family:all:12105 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958284;genbank:gi:41057258;uniprot:Q38599;genbank:GeneID:2732810 Probab=95.29 E-value=0.00043 Score=39.03 Aligned_cols=130 Identities=21% Similarity=0.269 Sum_probs=90.5 Q ss_pred CCeeecCCchhHHHHHHHHHHHHHhcCCCccceeecCCCCCcceEEEecCCCCccee-hhheeEEeeeeccceeeeccch Q lcl|NC_010762. 3 APEMVGPTMEPAIACRAYLMRRLDDRGIDLSVGATPPAGKPTRYVLVNQVDSRRRGP-VADYLIRTRVYNADAYECGQHA 81 (147) Q Consensus 3 ap~~l~PpvgP~~A~r~YL~~eLa~R~npLpVg~tpP~G~Pt~Yalls~~~t~~~~~-l~~~LiR~RV~d~D~vrle~nA 81 (147) -|-++.|-..-+.| .||.+.|.++|-+.+|+-..|.-.|++++.++|.|-++.-+ +..=.+.+-+|-.+.-++..=| T Consensus 1 ~~~i~~pda~~v~~--~~lr~~l~a~~~~V~V~t~vP~~RP~rfV~VertgG~~~~~~~Dr~~L~Vq~W~~t~~~A~~La 78 (131) T protein:vir:98 1 MPPILMPDAVAVIA--GYLRAVLVARGVTVPVGSRVPSPRPARFVRIERIGGPANTVVTDRPRLDVHCWGSSEEDAHDLM 78 (131) T ss_pred CCCccCCchhHHHH--HHHHHHHHhcCCceEecccCCCCCCceEEEEEecCCCcCCccccceEEEEEecCCCHHHHHHHH Confidence 23333344444443 69999999999999999999999999999999999987777 5778888999998777776666 Q ss_pred hHHHHHHHhhhhceeccCCCccEEEecccccccccccCCCCCCcccccceeeeeeeeeeec Q lcl|NC_010762. 82 TLLHAALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQAISVFWTVALKPI 142 (147) Q Consensus 82 ~LLHrllLhA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~~~sVFWTigLkP~ 142 (147) .+.-.+|| ++.+ .. ..-+-+-.-.-||-+|+| +++...=+++.|-=|+==+-. T Consensus 79 ~~vr~~ll-~~~~-~~-----g~~~~~~~e~~gpy~~PD-~es~~~Ryq~tv~l~~r~~~~ 131 (131) T protein:vir:98 79 QLCRALLG-AARG-SH-----GDTVLARPATGGPQFLPD-AETGAARWAFTLDITMRGHAL 131 (131) T ss_pred HHHHHHHh-hccc-cc-----chheeccccCCCCCcCCC-CCCCCceeEEEEEEEeeeccC Confidence 66655555 3222 11 112222333458999966 667788888888766532222 No 4 >protein:vir:9579 Length: 111 # NCBI annotation: gp45 # Family: family:all:1269 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862884;genbank:gi:32469476;genbank:GeneID:1461321 Probab=85.56 E-value=0.021 Score=29.83 Aligned_cols=111 Identities=15% Similarity=0.179 Sum_probs=69.3 Q ss_pred eecCCchhHHHHHHHHHHHHHhcCCCccceeecCCCCCcceEEEecCCCCcceehhheeEEeeeeccceeeeccchhHHH Q lcl|NC_010762. 6 MVGPTMEPAIACRAYLMRRLDDRGIDLSVGATPPAGKPTRYVLVNQVDSRRRGPVADYLIRTRVYNADAYECGQHATLLH 85 (147) Q Consensus 6 ~l~PpvgP~~A~r~YL~~eLa~R~npLpVg~tpP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LLH 85 (147) |+ +=+ -..||.+.| ..||+..+|++.|.+++++.|.|.+.+-++..-.+-+-+|-+-..+-. .|- T Consensus 1 mi----E~~--v~~~L~~~l-----~vpv~~~vp~~~P~~FV~vErtGG~~~~~~~~p~laVq~wg~S~~~Aa----~La 65 (111) T protein:vir:95 1 MI----EII--INKYLDGHL-----DVPSFFEHEAEAPDSFVIIQKTGGKERNHSGSATFAFQSYAPTMQKAA----ELN 65 (111) T ss_pred Ch----HHh--HHHHhhhhc-----CeeEEeecCCCCCCceEEEEeeCCccccccccceEEEEeccccHHHHH----HHH Confidence 21 111 134554433 379999999999999999999999999999888898999977544433 333 Q ss_pred HHHHhhhhceeccCCCccEEEecccccccccccCCCCCCcccccceeeeeeee Q lcl|NC_010762. 86 AALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQAISVFWTVA 138 (147) Q Consensus 86 rllLhA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~~~sVFWTig 138 (147) ..+..|+.+=.-.| -|.+.++. |+-+| -|+.+.-+=+|.-+=-++= T Consensus 66 ~~v~~a~~~l~~~~-----~i~~v~~~-s~ynf-~d~~tk~~RYQ~~~~i~~~ 111 (111) T protein:vir:95 66 VKVKSAVKGLIELD-----SICGVHLN-SDYNF-TDTETKQYRYQAVFDINYF 111 (111) T ss_pred HHHHHHHhhhhccc-----cccccccC-Ccccc-CCCCCCCceEEEEEEEEeC Confidence 33334443323333 35444444 48899 4555666666654422222 No 5 >protein:vir:94768 Length: 111 # NCBI annotation: unknown # Family: family:all:1269 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996711;genbank:gi:45597426;genbank:GeneID:2769040 Probab=83.56 E-value=0.059 Score=27.31 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=71.6 Q ss_pred eecCCchhHHHHHHHHHHHHHhcCCCccceeecCCCCCcceEEEecCCCCcceehhheeEEeeeeccceeeeccchhHHH Q lcl|NC_010762. 6 MVGPTMEPAIACRAYLMRRLDDRGIDLSVGATPPAGKPTRYVLVNQVDSRRRGPVADYLIRTRVYNADAYECGQHATLLH 85 (147) Q Consensus 6 ~l~PpvgP~~A~r~YL~~eLa~R~npLpVg~tpP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LLH 85 (147) |+ += --..||...| | .||...+|++.|.+++++.|.|.+.+-++.+-.+-+-+|-+-.. .|-.|- T Consensus 1 mi----E~--~v~~~L~~~l---~--vpv~~e~p~~~p~~FV~vErtGG~~~~~~~~~~lAVQ~~~~S~~----eAa~La 65 (111) T protein:vir:94 1 MI----EI--IIKNFLDTHL---S--VSSFLEKKGEMPLSYVLFEKTGSSKSNHLLSSTFAFQSYAPSMY----EAAKLN 65 (111) T ss_pred Ch----HH--hHHHHHhhcC---C--cceEeecCCCCCCceEEEEecCCccccccccceEEEEecchhHH----HHHHHH Confidence 21 11 1234555555 4 68999999999999999999999999999999999999987654 455555 Q ss_pred HHHHhhhhceeccCCCccEEEecccccccccccCCCCCCcccccceeeeeeee Q lcl|NC_010762. 86 AALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQAISVFWTVA 138 (147) Q Consensus 86 rllLhA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~~~sVFWTig 138 (147) -.+..|+.+=.-.|..+.|-+++ .-+++| +.+.=+=+|.-+=-+.= T Consensus 66 ~~v~~~~~~l~~~~~i~~v~~~s------~Ynf~d-~~tk~~RYQav~~i~~~ 111 (111) T protein:vir:94 66 EQLKEVVERLIELNEISNVSLNS------DYNFTD-TETKEYRYQAVFDINHY 111 (111) T ss_pred HHHHHHHhhcccccccceeecCC------CcccCC-CcCCCceEEEEEEEeeC Confidence 56666665555666656664444 356744 33434444432210000 No 6 >protein:vir:9764 Length: 111 # NCBI annotation: hypothetical protein # Family: family:all:1269 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795526;genbank:gi:28876278;genbank:GeneID:1257819 Probab=81.30 E-value=0.031 Score=28.84 Aligned_cols=107 Identities=17% Similarity=0.307 Sum_probs=75.2 Q ss_pred CchhHHHHHHHHHHHHHhcCCCccceeecCCCCCcceEEEecCCCCcceehhheeEEeeeeccceeeeccchhHHHHHHH Q lcl|NC_010762. 10 TMEPAIACRAYLMRRLDDRGIDLSVGATPPAGKPTRYVLVNQVDSRRRGPVADYLIRTRVYNADAYECGQHATLLHAALL 89 (147) Q Consensus 10 pvgP~~A~r~YL~~eLa~R~npLpVg~tpP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LLHrllL 89 (147) -++=+ -..||++.| ..||....|+++|.+|+++.+.|.+.+.++..-.+-+-+|-.-.+ .|-.|-.... T Consensus 1 mIE~~--i~~yL~~~l-----~vpv~~e~p~~~P~~FV~vEkTGG~~~~~~~~a~lAvQsyg~S~~----~AA~La~~V~ 69 (111) T protein:vir:97 1 MIEVI--IKKYLDEHL-----DVPSFFEHQKDEPARFIILEKTSGAKQNHLLSSTFAFQSYAESLY----EAALLNDKVK 69 (111) T ss_pred Chhhh--hhHHHhhhc-----CceEEEeecCCCCCceEEEEeeCCccccccccceEEEEecchhHH----HHHHHHHHHH Confidence 11222 235777766 459999999999999999999999999999999999999976543 4555555677 Q ss_pred hhhhceeccCCCccEEEecccccccccccCCCCCCcccccce----eee Q lcl|NC_010762. 90 GAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQAI----SVF 134 (147) Q Consensus 90 hA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~~~----sVF 134 (147) .|+-+-+-.|+.+.|.+++.- +|+|+.+ -=+=+|. --| T Consensus 70 ~a~~~l~~l~~i~~v~lns~Y------nf~d~~t-k~yRYQa~~di~~~ 111 (111) T protein:vir:97 70 QVIEQLDVLPQVSGVHLNADY------NFTDTAT-KRYRYQAVFDINHY 111 (111) T ss_pred HHhhhhccCccceeeeecccc------cCCCCCC-CCccEEEEEEEeeC Confidence 777777788888888888763 5655443 2222221 112 No 7 >protein:vir:4348 Length: 121 # NCBI annotation: Orf15 # Family: family:all:896 # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061511;genbank:gi:9635607;genbank:GeneID:1262874 Probab=80.92 E-value=0.022 Score=29.65 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=70.2 Q ss_pred eecCCchhHHHHHHHHHHHHHhcCCCccc-e-eecCCCCCcceEEEecCCCCcceehh------heeEEeeeeccceeee Q lcl|NC_010762. 6 MVGPTMEPAIACRAYLMRRLDDRGIDLSV-G-ATPPAGKPTRYVLVNQVDSRRRGPVA------DYLIRTRVYNADAYEC 77 (147) Q Consensus 6 ~l~PpvgP~~A~r~YL~~eLa~R~npLpV-g-~tpP~G~Pt~Yalls~~~t~~~~~l~------~~LiR~RV~d~D~vrl 77 (147) |. ||+--+..+-+=|...|.. +|.=| - ..+|+|.|.+|+..++++.+...+|. +..+.+-||..+.-+ T Consensus 1 m~-~~i~~~l~~d~~v~allg~--~~~Rvyp~~~aP~~~~~Pyiv~q~vsg~p~~~l~g~~~~~~~~vQIDvyA~t~~~- 76 (121) T protein:vir:43 1 MY-PPIFKVCSSSPAVTAILGA--SPLRMYQFGLAPQLVVKPYATWQTISGSPENYLWGRPDADGFTIQVDIFSATAAE- 76 (121) T ss_pred CC-hHHHHHHhhChhhhhhhcC--CCceeeccCCCCCCCcCCeEEEEEecCcccceecCCCCcceeEEEEEeeeCCHHH- Confidence 32 5555555555666666643 34333 2 23799999999999999988877765 457777788665433 Q ss_pred ccchhHHHHHHHhhhhceeccCCCccEEEecccccccccccCCCCCCcccccceeeeeeeee Q lcl|NC_010762. 78 GQHATLLHAALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQAISVFWTVAL 139 (147) Q Consensus 78 e~nA~LLHrllLhA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~~~sVFWTigL 139 (147) |.-|=++...|... ..+.+ .++..+ -|+++-+++...=+=|.+.= T Consensus 77 ---A~~l~~av~~Al~~-----~~~~~-------~~~~~~--ye~dT~lyR~s~Dv~w~~~r 121 (121) T protein:vir:43 77 ---ARDAAKAIRDAIEL-----SAYVV-------RWGGES--VDPDTKTYRVSFDVDWIVQR 121 (121) T ss_pred ---HHHHHHHHHHHhhh-----cCCcc-------cCCCCC--CcccccceeeeeEEEEeecC Confidence 33333344444432 22222 123444 46889999998888898876 No 8 >protein:vir:1643 Length: 111 # NCBI annotation: hypothetical protein # Family: family:all:1269 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695064;genbank:gi:23455755;genbank:GeneID:955492 Probab=78.80 E-value=0.11 Score=25.82 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=70.0 Q ss_pred eecCCchhHHHHHHHHHHHHHhcCCCccceeecCCCCCcceEEEecCCCCcceehhheeEEeeeeccceeeeccchhHHH Q lcl|NC_010762. 6 MVGPTMEPAIACRAYLMRRLDDRGIDLSVGATPPAGKPTRYVLVNQVDSRRRGPVADYLIRTRVYNADAYECGQHATLLH 85 (147) Q Consensus 6 ~l~PpvgP~~A~r~YL~~eLa~R~npLpVg~tpP~G~Pt~Yalls~~~t~~~~~l~~~LiR~RV~d~D~vrle~nA~LLH 85 (147) |+ +=+ -..||...| | .||...+|++.|.+++++.|.|.+.+-++..-.+-+-+|-+-.. .|-.|- T Consensus 1 mi----E~~--i~~~L~~~l---~--Vpv~~e~p~~~P~~FV~vErtGG~~~~~~~~~~lAVq~w~~S~~----eAa~La 65 (111) T protein:vir:16 1 MI----EII--IKNFLDTHL---S--VSSFLEKKGEMPLSYILFEKTGSSKSNHLLSSTFAFQSYAPSMY----EAAKLN 65 (111) T ss_pred Ch----HHh--HHHHHhhcC---C--ceeEeecCCCCCCceEEEEecCCccccccccceEEEEecchhHH----HHHHHH Confidence 21 211 235666655 3 68999999999999999999999999999988999999977654 455555 Q ss_pred HHHHhhhhceeccCCCccEEEecccccccccccCCCCCCcccccceeeeeeee Q lcl|NC_010762. 86 AALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQAISVFWTVA 138 (147) Q Consensus 86 rllLhA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~~~sVFWTig 138 (147) .++..|+.+=.-.|..+.|-+++ .-+|+| +.+.=+=+|.-+=-+.= T Consensus 66 ~~v~~~l~~l~~~~~I~av~~~s------~ynf~d-~~tk~~RYQav~~i~~~ 111 (111) T protein:vir:16 66 EQLKEVVERLIELNEISNVSLNS------DYNFTD-TETKEYRYQAVFDINHY 111 (111) T ss_pred HHHHHHHhhccccccceeeecCC------CCcCCC-CCCCCceEEEEEEEeeC Confidence 55566665545556655554443 356643 33333444432210000 No 9 >protein:vir:1892 Length: 121 # NCBI annotation: gp11 # Family: family:all:896 # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037672;genbank:gi:9634130;genbank:GeneID:1262490 Probab=63.21 E-value=0.26 Score=23.75 Aligned_cols=113 Identities=16% Similarity=0.217 Sum_probs=69.8 Q ss_pred eecCCchhHHHHHHHHHHHHHhcCCCccc-e-eecCCCCCcceEEEecCCCCcceehh------heeEEeeeeccceeee Q lcl|NC_010762. 6 MVGPTMEPAIACRAYLMRRLDDRGIDLSV-G-ATPPAGKPTRYVLVNQVDSRRRGPVA------DYLIRTRVYNADAYEC 77 (147) Q Consensus 6 ~l~PpvgP~~A~r~YL~~eLa~R~npLpV-g-~tpP~G~Pt~Yalls~~~t~~~~~l~------~~LiR~RV~d~D~vrl 77 (147) |. ||+--+..+-+=+...|.. +|.=| . -..|+|.|.+|+..++++.+...+|. +..+.+=||....-+ T Consensus 1 m~-~~i~~~l~~d~~v~allg~--~~~Rvyp~~~aP~~~~~Pyiv~q~vsg~p~~~l~G~~~~~~~~vQIDvyA~t~~~- 76 (121) T protein:vir:18 1 MI-APIFSVCASSPEVTDLLGS--NPVRIYPFGIQDDNVVYPYVVWQNITGSPENYIAQRPDADFFTLQVDAYADTVDE- 76 (121) T ss_pred Cc-hHHHHHHhcChhhhhhhcC--CCceeeeccCCCCcCcCCeEEEEEecCcccceecCCCCcceeEEEEEeecCCHHH- Confidence 33 6666666666767776632 33333 2 24588999999999999988877775 345555566554322 Q ss_pred ccchhHHHHHHHhhhhceeccCCCccEEEecccccccccccCCCCCCcccccceeeeeeeee Q lcl|NC_010762. 78 GQHATLLHAALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQAISVFWTVAL 139 (147) Q Consensus 78 e~nA~LLHrllLhA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~~~sVFWTigL 139 (147) |.-|=++...|.... +- +++ +++.| -|+++-+++...=|=|.+.= T Consensus 77 ---A~~l~~avr~Ale~~------~~--~~~----~~~~~--ye~dT~lyR~s~Dv~~~~~r 121 (121) T protein:vir:18 77 ---VIAVATALRDAIEPH------AH--ITR----WGGQE--RDPETKRYRYSFDVDWIVTR 121 (121) T ss_pred ---HHHHHHHHHHHhhhc------Cc--ccC----CCCCC--CcccccceeeeeEEEEeecC Confidence 333334444444321 11 111 33444 47889999998889998876 No 10 >protein:vir:97070 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:3244 # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453569;genbank:gi:84662604;genbank:GeneID:5142485 Probab=22.35 E-value=0.95 Score=20.70 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=57.7 Q ss_pred CCCCeeecCCchhHHHHHHHHHHHHHhc-CCCccceeecCCCCC-cceEEEecCCCCcceehhh-------eeEEeeeec Q lcl|NC_010762. 1 MTAPEMVGPTMEPAIACRAYLMRRLDDR-GIDLSVGATPPAGKP-TRYVLVNQVDSRRRGPVAD-------YLIRTRVYN 71 (147) Q Consensus 1 m~ap~~l~PpvgP~~A~r~YL~~eLa~R-~npLpVg~tpP~G~P-t~Yalls~~~t~~~~~l~~-------~LiR~RV~d 71 (147) ||.=+.| .+.|++- ++.+= --..|+|.| .+|++.++++.....+|.. ..+.+-||. T Consensus 1 M~~e~~l--------------~a~L~~~~~~Rvy-p~~aP~~~~~~Pyiv~q~vsg~p~~~ldG~~~~~~~~rvQIdvyA 65 (118) T protein:vir:97 1 MSYGRML--------------KDLLDPVFSGRVY-ADIPPDSPPLDAYAIYQRVGGVPVYWKEGGMPDKVNARVQVQIWS 65 (118) T ss_pred CchHHHH--------------HHHHhhhcCCccc-cccCCCCCCcCCEEEEEecCCcccccccCCCCCccceeEEEEEee Confidence 5544443 2233322 11111 145678888 4999999999987777722 457777887 Q ss_pred cceeeeccchhHHHHHHHhhhhceeccCCCccEEEecccccccccccCCCCCCccccc--ceeeeeeee Q lcl|NC_010762. 72 ADAYECGQHATLLHAALLGAAQARIVFPDVGQLWVTGTEHVSGPSDITDDDTTSLFGQ--AISVFWTVA 138 (147) Q Consensus 72 ~D~vrle~nA~LLHrllLhA~~~riv~p~~G~vwitgt~H~~GPad~~DD~~vplfG~--~~sVFWTig 138 (147) ...-+-.+-++.+ ..|...--+..+.| .|.|. -|+++.|+|. ..+|.|.-- T Consensus 66 ~t~~~A~~l~~av----~~al~~~~~~~~~~-----------~~~~~-ye~dt~lyr~~~Df~iw~~~~ 118 (118) T protein:vir:97 66 RSKQEAYLATVQV----LRIVSEANDMQVLS-----------QPIDD-YVRELKLYGSRVDISMWYNLT 118 (118) T ss_pred CCHHHHHHHHHHH----HHHhhccccccccc-----------CCccc-ccccCCceEEEEEEEEEeecC Confidence 7654433333333 33333222222211 23344 3567788885 467755443 Done!