Query lcl|NC_010391.1_cdsid_YP_001700568.1 [gene=STM0913.2n.Fels1] [protein=conserved hypothetical bacteriophage protein] [protein_id=YP_001700568.1] [location=23275..23550] Match_columns 91 No_of_seqs 28 out of 35 Neff 3.7 Searched_HMMs 1612 Date Thu Nov 7 12:55:20 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_35 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_35_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:3426 Length: 117 # 98.0 9.1E-08 5.7E-11 59.2 9.2 91 1-91 4-106 (117) 2 protein:vir:395 Length: 117 # 97.9 1.8E-07 1.1E-10 57.6 9.5 90 1-91 4-106 (117) 3 protein:vir:97237 Length: 122 87.8 0.021 1.3E-05 29.8 8.5 87 1-91 1-121 (122) 4 protein:vir:80382 Length: 122 80.2 0.067 4.2E-05 27.0 7.8 88 1-91 1-118 (122) 5 protein:vir:95145 Length: 126 62.7 0.33 0.0002 23.2 8.4 88 1-91 1-125 (126) 6 protein:vir:44 Length: 120 # N 13.7 4.5 0.0028 17.0 4.6 84 6-91 1-118 (120) 7 protein:vir:9509 Length: 381 # 10.7 4.6 0.0028 17.0 3.3 91 1-91 236-366 (381) 8 protein:vir:101291 Length: 381 10.7 4.6 0.0028 17.0 3.3 91 1-91 236-366 (381) 9 protein:vir:4161 Length: 112 # 10.1 6.4 0.004 16.2 4.6 91 1-91 4-111 (112) 10 protein:vir:4199 Length: 113 # 9.9 6.5 0.004 16.1 3.9 91 1-91 4-108 (113) No 1 >protein:vir:3426 Length: 117 # NCBI annotation: head-tail joining protein # Family: family:all:1908 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040589;genbank:gi:9626253;genbank:GeneID:2703484 Probab=98.02 E-value=9.1e-08 Score=59.18 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=70.8 Q ss_pred CCCHHHHHHHHHHHHHHHhcCcEEEe---C--CeEEEeecccc--hhhcC---CcccCceEEEEeC-CCcccccCCEEEE Q lcl|NC_010391. 1 MANPFDRLSTRMDEVTAARFGRPVLI---D--GAEYVAAEATF--MAELG---ALSGEGTHLIVFS-PQYRPARKQAVLW 69 (91) Q Consensus 1 M~~pFd~~~armD~~i~~~Mg~~~~I---N--G~~y~av~~e~--~~emg---~l~G~~~sLvvFS-sgYkPrr~D~V~~ 69 (91) -.||||+++++||.+|.+.||.+++| + +..+.+|+|+- ..-.+ .++++.=+|.+=+ .=-..+|+|.|.+ T Consensus 4 ~dNlfd~a~~~aD~~i~~~fg~~a~i~~~~g~~~~i~gVFDdP~~~~~~~gG~~i~~s~P~L~vk~aDv~~l~r~D~v~I 83 (117) T protein:vir:34 4 FDNLFDAAIARADETIRGYMGTSATITSGEQSGAVIRGVFDDPENISYAGQGVRVEGSSPSLFVRTDEVRQLRRGDTLTI 83 (117) T ss_pred ccchhHHHHhhcchhhHhhcCeeEEEEeCCCcceEEEEEecCccchhhccCCEEeecCCcEEEeeechhhccCCCCEEEE Confidence 45899999999999999999999988 3 35778888853 22222 4677888888874 3457888999999 Q ss_pred CCeeEEEEEEEeeC-CeEEEEEC Q lcl|NC_010391. 70 RGLDFTVTRWQRVN-GKYQISLE 91 (91) Q Consensus 70 ~g~~y~Vtr~~~~n-Gk~~i~lE 91 (91) +|+.|.|.+-+=.+ |--.|+|= T Consensus 84 ~G~~y~V~~~~PD~~G~~~l~L~ 106 (117) T protein:vir:34 84 GEENFWVDRVSPDDGGSCHLWLG 106 (117) T ss_pred CCCeeEeeecccCCCceEEEEee Confidence 99999999966543 56677776 No 2 >protein:vir:395 Length: 117 # NCBI annotation: gp10 # Family: family:all:1908 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046905;genbank:gi:9630475;genbank:GeneID:1261649 Probab=97.95 E-value=1.8e-07 Score=57.61 Aligned_cols=90 Identities=23% Similarity=0.260 Sum_probs=72.5 Q ss_pred CCCHHHHHHHHHHHHHHHhcCcEEEe---C--CeEEEeecccchhhc------CCcccCceEEEEe-CCCcccccCCEEE Q lcl|NC_010391. 1 MANPFDRLSTRMDEVTAARFGRPVLI---D--GAEYVAAEATFMAEL------GALSGEGTHLIVF-SPQYRPARKQAVL 68 (91) Q Consensus 1 M~~pFd~~~armD~~i~~~Mg~~~~I---N--G~~y~av~~e~~~em------g~l~G~~~sLvvF-SsgYkPrr~D~V~ 68 (91) -.||||+++++||++|.+.||-+++| + |....+|+|+- +-. +.++++.=+|.+= |.=-..+|+|.|. T Consensus 4 ~dNlFd~ama~aD~aI~~~~g~~a~i~~g~~~~rti~gVFDdP-~~~~~~aggg~ie~saP~LfvktaDv~gl~r~D~vt 82 (117) T protein:vir:39 4 FDNLFDEAMSRADGAIRGVMGTEAKVMSGTLSGATLVGVFDDP-ENIGYAGAGIRVEGTSPTLFVKTSTVSQLQRMDTLT 82 (117) T ss_pred ccchHHHHHHhhhHHHHHhcCceEEEEeCCCCceEEEEEecCc-cccccccCceEEeccCcEEEEeeccccccCCCCEEE Confidence 45899999999999999999999887 2 47888888864 222 3467777788777 5556789999999 Q ss_pred ECCeeEEEEEEEeeC-CeEEEEEC Q lcl|NC_010391. 69 WRGLDFTVTRWQRVN-GKYQISLE 91 (91) Q Consensus 69 ~~g~~y~Vtr~~~~n-Gk~~i~lE 91 (91) ++|+.|.|.+.+=.+ |--+|+|= T Consensus 83 I~g~~y~V~~~~pDg~G~~~l~L~ 106 (117) T protein:vir:39 83 INGRQFWVDRVGPDDCGSCHIWLG 106 (117) T ss_pred ECCCceEEeeeccCCCceEEEEee Confidence 999999999977654 56677876 No 3 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=87.82 E-value=0.021 Score=29.78 Aligned_cols=87 Identities=18% Similarity=0.209 Sum_probs=55.8 Q ss_pred CCCHHHHHHHHHHHHHHHhcCcEEEe----CCeEEEe------------------ecc-cchhhcCC---cccCceEEEE Q lcl|NC_010391. 1 MANPFDRLSTRMDEVTAARFGRPVLI----DGAEYVA------------------AEA-TFMAELGA---LSGEGTHLIV 54 (91) Q Consensus 1 M~~pFd~~~armD~~i~~~Mg~~~~I----NG~~y~a------------------v~~-e~~~emg~---l~G~~~sLvv 54 (91) |+ .+++|.+=++.+|.+ +|.++.+ .|..-+. +.. -.+.+.+. .+||.+ ++ T Consensus 1 M~-~y~~~~~~a~~Li~k-fG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~~~~idGtlI~~GD~~--l~ 76 (122) T protein:vir:97 1 MA-RFDSAIALAKKLIKK-NGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYEQRYIDGQTIRMGDQR--VF 76 (122) T ss_pred Cc-cchHHHHHHHHHHHH-hCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccchhhccCcEEeecCEE--EE Confidence 99 599999999999987 9998886 2211111 111 11111111 144433 33 Q ss_pred eCC---CcccccCCEEEECCeeEEEEEEEee--CCe---EEEEEC Q lcl|NC_010391. 55 FSP---QYRPARKQAVLWRGLDFTVTRWQRV--NGK---YQISLE 91 (91) Q Consensus 55 FSs---gYkPrr~D~V~~~g~~y~Vtr~~~~--nGk---~~i~lE 91 (91) +|+ ...|..||.|+.+|+.|-|....-. +|. ..|||= T Consensus 77 ~~a~~~~~~P~~gD~v~~~g~~~~Vi~v~~i~pa~~~v~y~lqlR 121 (122) T protein:vir:97 77 MPAEGLTAPPEVEGLVLRGLEVWKVIAVKPLNPNGQAIMYELQVR 121 (122) T ss_pred EeeCCCccccccCCEEEeCCEEEEEEeccccCCCCceEEEEEEee Confidence 455 6999999999999999999988652 444 455555 No 4 >protein:vir:80382 Length: 122 # NCBI annotation: BcepGomrgp10 # Family: family:all:704 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210230;genbank:gi:146329922;genbank:GeneID:5123491 Probab=80.19 E-value=0.067 Score=27.01 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=53.3 Q ss_pred CCCH-HHHHHHHHHHHHHHhcCcEEEeCC--------eEEEe------------eccc-chhhcCC---cccCceEEEEe Q lcl|NC_010391. 1 MANP-FDRLSTRMDEVTAARFGRPVLIDG--------AEYVA------------AEAT-FMAELGA---LSGEGTHLIVF 55 (91) Q Consensus 1 M~~p-Fd~~~armD~~i~~~Mg~~~~ING--------~~y~a------------v~~e-~~~emg~---l~G~~~sLvvF 55 (91) |+|. +++|.+-++.+|. ++|.++.|-- .+|.- +... .+.+-+. .+||-+-+ . T Consensus 1 m~~f~Y~rl~~~A~~Li~-kfG~~~tv~~~~~~~~~~~~~~P~t~~~~~~~v~gv~~~y~~r~idGtlIq~GD~~~~--~ 77 (122) T protein:vir:80 1 MKSFNYPRLLKTVDRLIE-KFGEECFIVEYIDAVDPTRPFDPPVRTEVRTPVKGVFVKATEKHADGTLIHIGDQLVL--I 77 (122) T ss_pred CCCcchhHHHHHHHHHHH-HhCCCeEEEEeeccCCCCCccccCCCceeeccceEEEecccccccCCcEEeeCCEEEE--E Confidence 9999 8999999999985 5888888731 11111 1100 0111100 13443322 2 Q ss_pred CC---CcccccCCEEEECCeeEEEEEEEe--eCCeEEEEEC Q lcl|NC_010391. 56 SP---QYRPARKQAVLWRGLDFTVTRWQR--VNGKYQISLE 91 (91) Q Consensus 56 Ss---gYkPrr~D~V~~~g~~y~Vtr~~~--~nGk~~i~lE 91 (91) |+ --+|..+|.|+.+|+.|-|..-.- -+|.+++|.= T Consensus 78 ~a~~~~~~P~~~D~v~~~g~~~~Vi~v~p~~pag~~v~y~~ 118 (122) T protein:vir:80 78 SGSLKREAANIKGDLFRGAEKWKMWNVVPLKPGPVNMLFKI 118 (122) T ss_pred ecccccccCCcCCEEEeCCeeEEEEeccccCCCCceEEEEE Confidence 43 457999999999999999988754 3565554433 No 5 >protein:vir:95145 Length: 126 # NCBI annotation: hypothetical protein ORF014 # Family: family:all:704 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293421;genbank:gi:148912842;genbank:GeneID:5228220 Probab=62.74 E-value=0.33 Score=23.23 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=57.9 Q ss_pred CCCHHHHHHHHHHHHHHHhcCcEEEeCCeEEEeecccch--------------------------hhcCCc------ccC Q lcl|NC_010391. 1 MANPFDRLSTRMDEVTAARFGRPVLIDGAEYVAAEATFM--------------------------AELGAL------SGE 48 (91) Q Consensus 1 M~~pFd~~~armD~~i~~~Mg~~~~ING~~y~av~~e~~--------------------------~emg~l------~G~ 48 (91) |+ -|+++++-++.+|+ +.|++..|...++.+-+|-+- +++.=+ +|+ T Consensus 1 ma-~y~rl~ata~rLIa-K~Gq~~~~r~~~~~~~~DP~~p~~p~~~t~~d~p~t~v~l~yd~r~~~~~~~idGt~I~~GD 78 (126) T protein:vir:95 1 MA-QFDRAIKTAQRLIA-KNGEKVKWRVIEDVTPTDPNKPWEPGPALPEDKDVTICFLPVDRQTQETFNFIKGTEVPKGS 78 (126) T ss_pred Cc-chHHHHHHHHHHHH-HhCCceEEEEEeeccCCCCccCCCCCCCceeecccceEEecccccccchhhhcccceeccCc Confidence 76 69999999999986 589999988875555444222 111111 455 Q ss_pred ceEEEEeCCCcccccCCEEEECCeeEEEEEEEeeCCeEE-----EEEC Q lcl|NC_010391. 49 GTHLIVFSPQYRPARKQAVLWRGLDFTVTRWQRVNGKYQ-----ISLE 91 (91) Q Consensus 49 ~~sLvvFSsgYkPrr~D~V~~~g~~y~Vtr~~~~nGk~~-----i~lE 91 (91) .+-|.= -...+|..||.|..||+.|.|--..-.+=-.+ |-.. T Consensus 79 ~~i~i~-gl~~ap~vgd~V~~~g~~~~ivav~pl~P~gvavLy~l~~~ 125 (126) T protein:vir:95 79 VMGLMG-NVPFAPNLKDVVIRNGVELRLAYIDVLSPNGQKVLYTMVFQ 125 (126) T ss_pred EEEEec-ccccccccCceEEECcEEEEEEeeeeeCCCcceeeeeeeec Confidence 554431 35789999999999999999877665442222 1111 No 6 >protein:vir:44 Length: 120 # NCBI annotation: gp9 # Family: family:all:2747 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463470;swissprot:trembl:q9t1b4;genbank:gi:16798792;uniprot:Q9T1B4;genbank:GeneID:922373 Probab=13.71 E-value=4.5 Score=16.98 Aligned_cols=84 Identities=12% Similarity=0.190 Sum_probs=38.6 Q ss_pred HHHHHHHHHHHHHhcCcEEEeCCeEEEeecccch---------hhcCC----------cccCceEE----EEe-----CC Q lcl|NC_010391. 6 DRLSTRMDEVTAARFGRPVLIDGAEYVAAEATFM---------AELGA----------LSGEGTHL----IVF-----SP 57 (91) Q Consensus 6 d~~~armD~~i~~~Mg~~~~ING~~y~av~~e~~---------~emg~----------l~G~~~sL----vvF-----Ss 57 (91) -..++-|-+.+ +.=+.+++.-..|...-++=. =+.+. .+++++++ +|| |. T Consensus 1 ~~~~~~~~~m~--~iPk~~l~~sit~k~~~~~d~~g~~~y~~pv~I~nvRvd~~~~ysg~~n~rq~~~naviFi~a~~S~ 78 (120) T protein:vir:44 1 MKVLKPITNAP--PLPLDWLIHNISYEAYKEEDRHNQVVYEKGIEIEHVRVDFSKSNQIAGLSDSDRYDAVIFIDAVNSM 78 (120) T ss_pred CcchhhhhhcC--CcChhhccceEEEEEecCCCCCCCCcccCceeccCeEEecceeeecCCCCceeeeeeEEEEecccCC Confidence 01111111100 122334444444443211100 00111 13333333 355 34 Q ss_pred Cc--ccccCCEEEECCeeEEEEEEEe---eCCe-EEEEEC Q lcl|NC_010391. 58 QY--RPARKQAVLWRGLDFTVTRWQR---VNGK-YQISLE 91 (91) Q Consensus 58 gY--kPrr~D~V~~~g~~y~Vtr~~~---~nGk-~~i~lE 91 (91) .+ ...-|.+++++|++|+|++... ++|+ .+--|| T Consensus 79 p~~~~~~~gskI~f~G~eytI~~i~~~~~~sn~vh~yEle 118 (120) T protein:vir:44 79 NVPSDFVSRSRIFFSGKAYKIVKVIPCYATSNSVHHWEIE 118 (120) T ss_pred ccceecCcCCEEEeCCceEEEEeeeeccCCCCceEEEEEE Confidence 45 3567999999999999998764 3444 455677 No 7 >protein:vir:9509 Length: 381 # NCBI annotation: hypothetical protein # Family: family:all:635 # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835556;genbank:gi:30043951;genbank:GeneID:1260537 Probab=10.69 E-value=4.6 Score=16.97 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=26.2 Q ss_pred CCCHHHHHHHHHHHHHHH--------hcCcEEEeC-----------------Ce-------EEEeecccchhhcCCcccC Q lcl|NC_010391. 1 MANPFDRLSTRMDEVTAA--------RFGRPVLID-----------------GA-------EYVAAEATFMAELGALSGE 48 (91) Q Consensus 1 M~~pFd~~~armD~~i~~--------~Mg~~~~IN-----------------G~-------~y~av~~e~~~emg~l~G~ 48 (91) -.+.++.+.+-.-+.... +-.-.|..| |. +++++.++..++=..+=|+ T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~mn~~t~~~l~~~~~~~~~~G~~v~~l~~g~~vv~s~~~p~~~iifgD 315 (381) T protein:vir:95 236 PRATVNELTQVFKYHSTNEKGKSVAVKGNVTMVVNPSDAFEVQAQYTHLNANGVYVTALPFNLNVIESTVQEAGKVLTYV 315 (381) T ss_pred chhhHHHHHHHHHhhccccccccccccCceEEEEccccHHhhccccccCCCCCceeecCCCCceEEecCCCCcCcEEEEe Confidence 122222222211111100 001112222 22 2233444443321112222 Q ss_pred ceEEEEe-CCCcccccCCEEEECCeeEEEEEEEeeCCeEE-------EEEC Q lcl|NC_010391. 49 GTHLIVF-SPQYRPARKQAVLWRGLDFTVTRWQRVNGKYQ-------ISLE 91 (91) Q Consensus 49 ~~sLvvF-SsgYkPrr~D~V~~~g~~y~Vtr~~~~nGk~~-------i~lE 91 (91) ---++++ ..|.+=++-|..-+-.=.=...-++|+||+|+ ++|. T Consensus 316 fs~Y~i~~r~~~~i~~~~~~~~~~d~~~f~a~~r~dg~~~~~~A~~v~~l~ 366 (381) T protein:vir:95 316 KGLYDGYLAGGINVQKFKETLALDDMDLYTAKQFAYGKAKDNKVAAVWKLD 366 (381) T ss_pred cccEEEEEecccEEEeechhHhhcCCeEEEEEEEEcCEEecCceEEEEEEE Confidence 2222222 22222222222111110111344567788775 2222 No 8 >protein:vir:101291 Length: 381 # NCBI annotation: hypothetical protein # Family: family:all:635 # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908831;genbank:gi:118725095;genbank:GeneID:4555862 Probab=10.69 E-value=4.6 Score=16.97 Aligned_cols=91 Identities=12% Similarity=-0.004 Sum_probs=26.2 Q ss_pred CCCHHHHHHHHHHHHHHH--------hcCcEEEeC-----------------Ce-------EEEeecccchhhcCCcccC Q lcl|NC_010391. 1 MANPFDRLSTRMDEVTAA--------RFGRPVLID-----------------GA-------EYVAAEATFMAELGALSGE 48 (91) Q Consensus 1 M~~pFd~~~armD~~i~~--------~Mg~~~~IN-----------------G~-------~y~av~~e~~~emg~l~G~ 48 (91) -.+.++.+.+-.-+.... +-.-.|..| |. +++++.++..++=..+=|+ T Consensus 236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~mn~~t~~~l~~~~~~~~~~G~~v~~l~~g~~vv~s~~~p~~~iifgD 315 (381) T protein:vir:10 236 PRATVNELTQVFKYHSTNEKGKSVAVKGNVTMVVNPSDAFEVQAQYTHLNANGVYVTALPFNLNVIESTVQEAGKVLTYV 315 (381) T ss_pred chhhHHHHHHHHHhhccccccccccccCceEEEEccccHHhhccccccCCCCCceeecCCCCceEEecCCCCcCcEEEEe Confidence 122222222211111100 001112222 22 2233444443321112222 Q ss_pred ceEEEEe-CCCcccccCCEEEECCeeEEEEEEEeeCCeEE-------EEEC Q lcl|NC_010391. 49 GTHLIVF-SPQYRPARKQAVLWRGLDFTVTRWQRVNGKYQ-------ISLE 91 (91) Q Consensus 49 ~~sLvvF-SsgYkPrr~D~V~~~g~~y~Vtr~~~~nGk~~-------i~lE 91 (91) ---++++ ..|.+=++-|..-+-.=.=...-++|+||+|+ ++|. T Consensus 316 fs~Y~i~~r~~~~i~~~~~~~~~~d~~~f~a~~r~dg~~~~~~A~~v~~l~ 366 (381) T protein:vir:10 316 KGLYDGYLAGGINVQKFKETLALDDMDLYTAKQFAYGKAKDNKVAAVWKLD 366 (381) T ss_pred cccEEEEEecccEEEeechhHhhcCCeEEEEEEEEcCEEecCceEEEEEEE Confidence 2222222 22222222222111110111344567788775 2222 No 9 >protein:vir:4161 Length: 112 # NCBI annotation: unknown # Family: family:all:11763 # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046970;genbank:gi:9630540;genbank:GeneID:1261714 Probab=10.13 E-value=6.4 Score=16.16 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=53.3 Q ss_pred CCCHHHHHHHH--HHHHHHHhcCcEEEeCCeEEEeecccchhhcC--------CcccCce----EEEEeCCCcccccCCE Q lcl|NC_010391. 1 MANPFDRLSTR--MDEVTAARFGRPVLIDGAEYVAAEATFMAELG--------ALSGEGT----HLIVFSPQYRPARKQA 66 (91) Q Consensus 1 M~~pFd~~~ar--mD~~i~~~Mg~~~~ING~~y~av~~e~~~emg--------~l~G~~~----sLvvFSsgYkPrr~D~ 66 (91) --..|.|++.| ||+...-.-|+.--=.|+|..-=....++-|= -++|... .+++---|.---+||. T Consensus 4 svtrF~~Li~~YG~~~~LiH~~~~~RD~RGQPi~ED~~~~iK~FFHVN~G~ERiI~GQ~i~DYDAY~LI~~~~~i~~~D~ 83 (112) T protein:vir:41 4 SVTRFNQLIYKYGMDAKLIHKVMNGRDERGQPITEDTETSIKVFFHVNTGNERLILGQQVVDYDAYALIVKTLNVNDDDE 83 (112) T ss_pred chHHHHHHHHHhCCchhhhhhhhccccccCCCccccCCceEEEEEEeeCCCceeeecceeecccceEEEeeeeeeccCCe Confidence 23569999876 78877777666666666654321111222221 1344332 2344444555679999 Q ss_pred EEECCeeEEEEEEEeeCCeEEEEE---C Q lcl|NC_010391. 67 VLWRGLDFTVTRWQRVNGKYQISL---E 91 (91) Q Consensus 67 V~~~g~~y~Vtr~~~~nGk~~i~l---E 91 (91) +..+|+.|.|++.--+---+-+.| | T Consensus 84 I~i~~~~Y~V~aiI~~RTH~E~~L~Rie 111 (112) T protein:vir:41 84 IEVDGKRYRVGAVIPQRTHQELHLRRVE 111 (112) T ss_pred EEECCceEEEeeeccccccceeeeeeec Confidence 999999999999754443333333 3 No 10 >protein:vir:4199 Length: 113 # NCBI annotation: unknown # Family: family:all:11763 # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071824;genbank:gi:11863107;genbank:GeneID:1257609 Probab=9.94 E-value=6.5 Score=16.11 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=54.0 Q ss_pred CCCHHHHHHHH--HHHHHHHhcCcEEEeCCeEEEeecccchhhcC--------CcccCce----EEEEeCCCcccccCCE Q lcl|NC_010391. 1 MANPFDRLSTR--MDEVTAARFGRPVLIDGAEYVAAEATFMAELG--------ALSGEGT----HLIVFSPQYRPARKQA 66 (91) Q Consensus 1 M~~pFd~~~ar--mD~~i~~~Mg~~~~ING~~y~av~~e~~~emg--------~l~G~~~----sLvvFSsgYkPrr~D~ 66 (91) ..--|.|++.| ||+...-.-|+.--=.|+|..-=....++-|= -++|... .+++---|.---+||. T Consensus 4 ikggF~~Li~rYG~~~~LiH~~~~~RD~RGQPi~ED~~~~iK~FFHVN~G~ERiI~GQ~i~DYDAY~LI~~~~~i~~~D~ 83 (113) T protein:vir:41 4 IKGGFQRLLRRYGQEVTLVHHSLKERDQRGQPVYEDDTRPLKAFFHVNRGGERIINGQRISDYDAYVLIPLGVSIMRGDH 83 (113) T ss_pred chhHHHHHHHHhCCchhhhhhhhccccccCCCccccCCceEEEEEEeeCCCceeeecceeecccceEEEeeeeeeccCCe Confidence 56779999876 78777777666666666654321111222221 1344332 2344444555679999 Q ss_pred EEECCeeEEEEEEEeeCCeEEEEEC Q lcl|NC_010391. 67 VLWRGLDFTVTRWQRVNGKYQISLE 91 (91) Q Consensus 67 V~~~g~~y~Vtr~~~~nGk~~i~lE 91 (91) +..+|+.|.|++.--+---+-+.|. T Consensus 84 I~i~~~rY~V~aiI~~RTH~E~~L~ 108 (113) T protein:vir:41 84 ILIGEDKYTVTSIIKNRTHIEATLQ 108 (113) T ss_pred EEECCceEEEeeecccccchhhhee Confidence 9999999999997544333333333 Done!