Query lcl|NC_010391.1_cdsid_YP_001700564.1 [gene=STM0911.1n.Fels1] [protein=hypothetical protein] [protein_id=YP_001700564.1] [location=19094..19300] Match_columns 68 No_of_seqs 44 out of 50 Neff 4.0 Searched_HMMs 1612 Date Thu Nov 7 12:55:07 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_31 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_31_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:79544 Length: 70 # 100.0 2.4E-33 1.5E-36 199.4 8.6 67 1-67 1-70 (70) 2 protein:vir:96750 Length: 176 95.2 0.00015 9.3E-08 41.5 5.9 68 1-68 97-176 (176) 3 protein:vir:3419 Length: 68 # 83.1 0.026 1.6E-05 29.3 6.6 61 1-64 1-68 (68) 4 protein:vir:388 Length: 68 # N 77.9 0.053 3.3E-05 27.6 6.5 61 1-64 1-68 (68) 5 protein:vir:3970 Length: 110 # 20.0 1.2 0.00074 20.2 2.7 66 1-68 21-110 (110) 6 protein:vir:6212 Length: 434 # 16.1 1.9 0.0012 19.0 2.9 65 1-68 1-88 (434) 7 protein:vir:3615 Length: 110 # 15.8 1.9 0.0012 19.0 2.8 64 1-68 21-108 (110) 8 protein:vir:9928 Length: 118 # 15.6 2.1 0.0013 18.9 2.9 63 1-68 29-118 (118) 9 protein:vir:741 Length: 110 # 13.2 2.4 0.0015 18.5 2.6 66 1-68 21-110 (110) 10 protein:vir:106583 Length: 105 10.6 3.8 0.0023 17.4 2.8 56 1-67 28-105 (105) No 1 >protein:vir:79544 Length: 70 # NCBI annotation: hypothetical protein # Family: family:all:1547 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272516;genbank:gi:148609385;genbank:GeneID:5204380 Probab=99.96 E-value=2.4e-33 Score=199.40 Aligned_cols=67 Identities=49% Similarity=0.744 Sum_probs=64.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCeEeeCCeeecccChHHHHHHHHHHHHHHHHHhC---CCCCceeccc Q lcl|NC_010391. 1 MTREQLLQLQQAYFDAELAVLQGKSITLNGQSMTMESLGDIRRGRKEIEDRLRLMDC---DRQLYSLARF 67 (68) Q Consensus 1 mt~e~~~~ml~~y~~AE~avl~Gks~t~~gr~lT~~dLseIRkgr~~WE~rl~~~~~---~r~g~~lARf 67 (68) ||+|+|++||+.|++||+|||+|||||||||+|||+||+||||||+|||++|+++++ ++++|+|||| T Consensus 1 mt~e~~~~ml~~yleAE~avl~GkS~ti~gr~lTre~LseIRkgr~~We~rl~~~~~~r~g~~~~kvarF 70 (70) T protein:vir:79 1 MNQNDIEAMIQRYTEAEMAVLDGKSVTFNGQQMTMENLSEIRQGRQEWERRLAALITRRRGHPGYRLARF 70 (70) T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCceeeCCeeecccCHHHHHHHHHHHHHHHHHHhcccCCCCCcccccC Confidence 999999999999999999999999999999999999999999999999999999985 4567999999 No 2 >protein:vir:96750 Length: 176 # NCBI annotation: putative phage-related protein # Family: family:all:3872 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039816;genbank:gi:126010851;genbank:GeneID:5076260 Probab=95.15 E-value=0.00015 Score=41.54 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=50.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHcC------CeEeeCCeeecccChHHHHHHHHHHHHHHHHHh--CCCCC----ceecccC Q lcl|NC_010391. 1 MTREQLLQLQQAYFDAELAVLQG------KSITLNGQSMTMESLGDIRRGRKEIEDRLRLMD--CDRQL----YSLARFT 68 (68) Q Consensus 1 mt~e~~~~ml~~y~~AE~avl~G------ks~t~~gr~lT~~dLseIRkgr~~WE~rl~~~~--~~r~g----~~lARf~ 68 (68) +.-=+-....+.-|+|=+|||+| |||.||||+|-+-.++|+-|=|++-..++++++ +++++ .--+||+ T Consensus 97 ~~~~D~Rsha~~~LdAIeAvLe~RAt~dQ~~y~IngR~L~rtpI~eLlkLR~~yr~e~arE~~~s~~~~~~g~~v~v~~~ 176 (176) T protein:vir:96 97 TNPVDARSHAKRMLDAIEATLEKRATRDQQSYEIEGRRLDRIPIPELLKLRDRYRREHQRELEQAGLRPRRQSFIRVSLS 176 (176) T ss_pred cCCCCCchHHHHHHHHHHHHHhccccccceeeEecCeeeeccCHHHHHHHHHHHHHHHHHHhHhhcCCCCCCceeEEeeC Confidence 11112334455566777888877 799999999999999999999999999998753 33333 2368899 No 3 >protein:vir:3419 Length: 68 # NCBI annotation: head-tail joining protein # Family: family:all:1709 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040582;genbank:gi:9626246;genbank:GeneID:2703525 Probab=83.07 E-value=0.026 Score=29.28 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=46.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCeE---eeCCeee--cccChHHHHHHHHHHHHHHHHHhCCCCC--cee Q lcl|NC_010391. 1 MTREQLLQLQQAYFDAELAVLQGKSI---TLNGQSM--TMESLGDIRRGRKEIEDRLRLMDCDRQL--YSL 64 (68) Q Consensus 1 mt~e~~~~ml~~y~~AE~avl~Gks~---t~~gr~l--T~~dLseIRkgr~~WE~rl~~~~~~r~g--~~l 64 (68) ||. ++||+.-.+|.-.+++||++ +-||+++ |.+|++++|+=+.+-|..|-.-.+.|+| +-+ T Consensus 1 M~~---~~~L~eAr~AlH~LltGk~Vv~v~~dGr~V~ys~Asi~~L~~YI~~Le~~LG~~~r~R~Pagv~v 68 (68) T protein:vir:34 1 MTR---QEELAAARAALHDLMTGKRVATVQKDGRRVEFTATSVSDLKKYIAELEVQTGMTQRRRGPAGFYV 68 (68) T ss_pred CcH---HHHHHHHHHHHHHhhhcceeEEEeeCCcEEEeeecCHHHHHHHHHHHHHHhccCCCccCcccccC Confidence 876 45899888999999999754 5599876 6899999999999999888764433322 334 No 4 >protein:vir:388 Length: 68 # NCBI annotation: gp3 # Family: family:all:1709 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046898;genbank:gi:9630467;genbank:GeneID:1261642 Probab=77.91 E-value=0.053 Score=27.57 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=45.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCeE---eeCCeee--cccChHHHHHHHHHHHHHHHHHhCCCC--Ccee Q lcl|NC_010391. 1 MTREQLLQLQQAYFDAELAVLQGKSI---TLNGQSM--TMESLGDIRRGRKEIEDRLRLMDCDRQ--LYSL 64 (68) Q Consensus 1 mt~e~~~~ml~~y~~AE~avl~Gks~---t~~gr~l--T~~dLseIRkgr~~WE~rl~~~~~~r~--g~~l 64 (68) |+. ++||+.-.+|.-.+++||++ +-||+++ +.+|+.++|+=+.+-|..|---.+.|+ |+-+ T Consensus 1 M~~---~~~L~eAr~AlH~LltG~~Vvsv~~dGr~V~ys~Asi~~L~~YI~~Le~~LG~~~rrR~PaGv~v 68 (68) T protein:vir:38 1 MAT---QTELDAARAALHDLMMGKRVATVQKDGRRVEFTATSVSDLKKYIADLESQVGTTSRRRGPAGFYV 68 (68) T ss_pred CcH---HHHHHHHHHHHHHhhhCceeEEEeeCCcEEEeeecCHHHHHHHHHHHHHHhccCCCccCcccccC Confidence 775 45898888899999999754 5599876 689999999999998888754333332 3334 No 5 >protein:vir:3970 Length: 110 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663678;genbank:gi:21716115;genbank:GeneID:951203 Probab=20.01 E-value=1.2 Score=20.17 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=38.5 Q ss_pred CCHHHHHHHHHHHH--------------HHHHHHH-------cC-CeEeeCCeeeccc--ChHHHHHHHHHHHHHHHHHh Q lcl|NC_010391. 1 MTREQLLQLQQAYF--------------DAELAVL-------QG-KSITLNGQSMTME--SLGDIRRGRKEIEDRLRLMD 56 (68) Q Consensus 1 mt~e~~~~ml~~y~--------------~AE~avl-------~G-ks~t~~gr~lT~~--dLseIRkgr~~WE~rl~~~~ 56 (68) +=++++.++|-.|+ ..|.+|- .| +|++.+|.++|-. |++++..++..|... ... T Consensus 21 ~li~~a~~~i~~~l~~~~~~iP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S~sf~~~d~~~y~~~l~~y~~~--~~~ 98 (110) T protein:vir:39 21 VIEKRTRERLLLILSSNIKEVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLSMTFSESDFDEYADEIESWRKS--KET 98 (110) T ss_pred HHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhccccccccceeecCCeeeeecccCcchhHHHHHHHhhh--ccc Confidence 22334444443333 3344442 46 8999999999984 699999999999522 222 Q ss_pred CCCCCceecccC Q lcl|NC_010391. 57 CDRQLYSLARFT 68 (68) Q Consensus 57 ~~r~g~~lARf~ 68 (68) .+.++....||= T Consensus 99 ~~~~~~g~~~f~ 110 (110) T protein:vir:39 99 EGDKKIGRFRLY 110 (110) T ss_pred cccCcceeeeeC Confidence 223333334444 No 6 >protein:vir:6212 Length: 434 # NCBI annotation: prohead protease # Family: family:all:21 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852592;genbank:gi:31415852;genbank:GeneID:1489210 Probab=16.10 E-value=1.9 Score=19.02 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=30.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCeEeeCCeeecccChHHHHHH-------HHHHHHHHHHHhCC-------CC------ Q lcl|NC_010391. 1 MTREQLLQLQQAYFDAELAVLQGKSITLNGQSMTMESLGDIRRG-------RKEIEDRLRLMDCD-------RQ------ 60 (68) Q Consensus 1 mt~e~~~~ml~~y~~AE~avl~Gks~t~~gr~lT~~dLseIRkg-------r~~WE~rl~~~~~~-------r~------ 60 (68) |++.++.+.+..=.++=.+.|.++. ..-.++.+++..+.+. ++.++.+++++... .. T Consensus 1 M~l~el~~~~~~~~~~~~a~l~~~~---~~~~~~~ee~~~~~~e~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~~~~~ 77 (434) T protein:vir:62 1 MNLKEILNASLTRTKSRLAELQGKV---EKNEVRSEELAAVKAEVEQLTKEIQTISEELAKLEEKEKEEDPAKKKDDDPE 77 (434) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH---hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh Confidence 9999998877776666666666642 2234545555444443 33333333222110 00 Q ss_pred ---CceecccC Q lcl|NC_010391. 61 ---LYSLARFT 68 (68) Q Consensus 61 ---g~~lARf~ 68 (68) ........ T Consensus 78 ~~~~~~~~~~~ 88 (434) T protein:vir:62 78 KKEDPTAKENP 88 (434) T ss_pred hhcchhhhcch Confidence 00011111 No 7 >protein:vir:3615 Length: 110 # NCBI annotation: ORF38 # Family: family:all:372 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112701;genbank:gi:13786569;genbank:GeneID:921067 Probab=15.83 E-value=1.9 Score=19.04 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=37.6 Q ss_pred CCHHHHHHHHHHH--------------HHHHHHHH-------cC-CeEeeCCeeecc--cChHHHHHHHHHHHHHHHHHh Q lcl|NC_010391. 1 MTREQLLQLQQAY--------------FDAELAVL-------QG-KSITLNGQSMTM--ESLGDIRRGRKEIEDRLRLMD 56 (68) Q Consensus 1 mt~e~~~~ml~~y--------------~~AE~avl-------~G-ks~t~~gr~lT~--~dLseIRkgr~~WE~rl~~~~ 56 (68) +=++++.++|-.| +..|.+|- .| +|++.+|.++|- .|++++.+.+.-|...- T Consensus 21 ~li~~a~~~i~~~~~~~~~eiP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S~sf~~~d~~~y~~~l~~y~~~~---- 96 (110) T protein:vir:36 21 VIEKRTRDRLLLILGSDIKEVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLSMTFSESDFDEYADEIESWRKSR---- 96 (110) T ss_pred HHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhccccccccceeecCCceeeecccCcchHHHHHHHHHhhh---- Confidence 2233333333333 23344442 46 899999999998 46899999999995321 Q ss_pred CCCCCceecccC Q lcl|NC_010391. 57 CDRQLYSLARFT 68 (68) Q Consensus 57 ~~r~g~~lARf~ 68 (68) ..+.+.+++||. T Consensus 97 ~~~~~~~~g~~~ 108 (110) T protein:vir:36 97 ETEGDKKIGRFR 108 (110) T ss_pred ccccCCcceeee Confidence 222344444444 No 8 >protein:vir:9928 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:372 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795690;genbank:gi:28876458;genbank:GeneID:1258013 Probab=15.61 E-value=2.1 Score=18.86 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=36.9 Q ss_pred CCHHHHHHHHHHHH------------------HHHHHH-------HcC-CeEeeCCeeec-ccChHHHHHHHHHHHHHHH Q lcl|NC_010391. 1 MTREQLLQLQQAYF------------------DAELAV-------LQG-KSITLNGQSMT-MESLGDIRRGRKEIEDRLR 53 (68) Q Consensus 1 mt~e~~~~ml~~y~------------------~AE~av-------l~G-ks~t~~gr~lT-~~dLseIRkgr~~WE~rl~ 53 (68) +=++.+.++|-.|+ .-|.+| -.| +|++.+|.++| ..|+++.-..+..|-. T Consensus 29 ~~i~~a~~~i~~~l~~~~~~~~~eiP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S~sf~~d~~ey~~~l~~~~~--- 105 (118) T protein:vir:99 29 LAIYESKERVLAKLNEYSETEITKIPDRLRFIVRDVAIKRFNRINSEGAVEDSEEGKTFKWDSYLKEYESTLRSAAI--- 105 (118) T ss_pred HHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHhcCcCCcccceeecCCeeeeeccCchhHHHHHHHHhh--- Confidence 22344444444443 223333 135 89999999999 6678888777777732 Q ss_pred HHhCCCCCceecccC Q lcl|NC_010391. 54 LMDCDRQLYSLARFT 68 (68) Q Consensus 54 ~~~~~r~g~~lARf~ 68 (68) .....+-..+||= T Consensus 106 --~~~~~~~g~v~Fi 118 (118) T protein:vir:99 106 --GKVYSGKGVARFI 118 (118) T ss_pred --hcccCcCcceeeC Confidence 1222334477788 No 9 >protein:vir:741 Length: 110 # NCBI annotation: unknown # Family: family:all:372 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108718;genbank:gi:13487840;genbank:GeneID:920873 Probab=13.22 E-value=2.4 Score=18.47 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=38.4 Q ss_pred CCHHHHHHHHHHHH--------------HHHHHHH-------cC-CeEeeCCeeeccc--ChHHHHHHHHHHHHHHHHHh Q lcl|NC_010391. 1 MTREQLLQLQQAYF--------------DAELAVL-------QG-KSITLNGQSMTME--SLGDIRRGRKEIEDRLRLMD 56 (68) Q Consensus 1 mt~e~~~~ml~~y~--------------~AE~avl-------~G-ks~t~~gr~lT~~--dLseIRkgr~~WE~rl~~~~ 56 (68) +=++.+.++|-.|+ .-|.+|- .| +|++.+|.++|-. |++++...+.-|... ... T Consensus 21 ~li~~a~~~i~~~l~~~~~~iP~~l~~iv~evav~ryNR~g~EG~~S~SeeG~S~sf~~~d~~~y~~~l~~y~~~--~~~ 98 (110) T protein:vir:74 21 IIEKRTRERLLLILGSDLKEVPPELEYVVLDVSLKRFNRIGQEGMQSYSQEGLSMTFSESDFDEYADEIESRRKS--KET 98 (110) T ss_pred HHHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHhcccCccccceeecCCeeeeecccchhhHHHHHHHHHhh--ccc Confidence 22233344444432 2233332 46 8999999999984 799999999998743 222 Q ss_pred CCCCCceecccC Q lcl|NC_010391. 57 CDRQLYSLARFT 68 (68) Q Consensus 57 ~~r~g~~lARf~ 68 (68) .++++....||= T Consensus 99 ~~~~~~~~~~f~ 110 (110) T protein:vir:74 99 EGDKKIGRFRLY 110 (110) T ss_pred cccCcceeeeeC Confidence 233444444444 No 10 >protein:vir:106583 Length: 105 # NCBI annotation: putative protein # Family: family:all:6481 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958586;genbank:gi:41179246;genbank:GeneID:2717119 Probab=10.60 E-value=3.8 Score=17.42 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=34.6 Q ss_pred CCHHHHHHHHHH------------HHHHHHHHH-------cC-CeEeeCCeeeccc--ChHHHHHHHHHHHHHHHHHhCC Q lcl|NC_010391. 1 MTREQLLQLQQA------------YFDAELAVL-------QG-KSITLNGQSMTME--SLGDIRRGRKEIEDRLRLMDCD 58 (68) Q Consensus 1 mt~e~~~~ml~~------------y~~AE~avl-------~G-ks~t~~gr~lT~~--dLseIRkgr~~WE~rl~~~~~~ 58 (68) .=++++.+.+-. |...|.||- .| .|.+-+|.+.|-+ ++++|.++++-|. T Consensus 28 ~lieda~~~vl~y~nr~~ip~~l~~~v~evav~~fNR~G~EG~tS~SegGvS~sy~~~~~~~~~~~l~~yR--------- 98 (105) T protein:vir:10 28 ELVKESIAQVLDYTGQKKLVGSMDIYVKKLAVINYNRLGIEGETQRSEGGITNYLETGIPKDIRQGLNSYR--------- 98 (105) T ss_pred HHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHhcccCCcccceeecCCeeeeeeccCcHHHHHHHHHHh--------- Confidence 112222222222 234555553 45 7999999999988 6789998887774 Q ss_pred CCCceeccc Q lcl|NC_010391. 59 RQLYSLARF 67 (68) Q Consensus 59 r~g~~lARf 67 (68) .-+++|| T Consensus 99 --~~~v~~~ 105 (105) T protein:vir:10 99 --IAKVKKL 105 (105) T ss_pred --hhcccCC Confidence 2456777 Done!