BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_010325.1_cdsid_YP_001671939.1 [gene=gp66] [protein=terminase large subunit] [protein_id=YP_001671939.1] [location=complement(42244..43692)] (482 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: ter... 993 0.0 gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2... 268 1e-73 gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: term... 265 9e-73 gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp... 265 1e-72 gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: ph... 258 1e-70 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 51 3e-08 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 47 7e-07 gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: pu... 44 4e-06 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 42 1e-05 gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF... 42 2e-05 gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: put... 41 3e-05 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 40 6e-05 gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: pu... 38 2e-04 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 37 4e-04 gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: p... 35 0.002 gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF... 35 0.002 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 35 0.002 gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: OR... 35 0.002 gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF... 35 0.002 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 35 0.003 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 35 0.003 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 34 0.004 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 34 0.004 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 34 0.005 gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF... 32 0.011 gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF... 32 0.014 gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF... 32 0.024 gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: la... 32 0.024 gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: Ter... 31 0.037 gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: con... 28 0.18 gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp1... 28 0.25 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 28 0.30 gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp1... 27 0.69 gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: put... 27 0.76 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 26 1.2 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 25 1.9 gi|4157|lcl|protein:vir:94665 Length: 448 # NCBI annotation: ter... 23 6.5 >gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: terminase # Family: family:all:1730 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775255;genbank:gi:27476053;genbank:GeneID :2700601 Length = 482 Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/482 (97%), Positives = 477/482 (98%) Query: 1 MDTQERLRNLVRELAERQKYFRMNQYTPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGA 60 MDTQERLRNLVRELAERQKYFRMNQYTPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGA Sbjct: 1 MDTQERLRNLVRELAERQKYFRMNQYTPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGA 60 Query: 61 FIMACHLTGRYPEWWTGRKYDRPVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIP 120 FIMACHLTGRYPEWWTGRK+D+PVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIP Sbjct: 61 FIMACHLTGRYPEWWTGRKFDKPVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIP 120 Query: 121 KEDIVETIRREGKPGCVQAVVVKHTSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECPK 180 KEDIV+T RREGKPGCVQAV+V+H SGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECPK Sbjct: 121 KEDIVKTERREGKPGCVQAVMVRHVSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECPK 180 Query: 181 DIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVK 240 DIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFL+HASWEDAPHLSPEVK Sbjct: 181 DIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLIHASWEDAPHLSPEVK 240 Query: 241 EQLLSVYSPAERRMRAEGVPMLGSGVVFPILEEKFVCEPFQIPDHFHRIIGIDLGFDHPN 300 EQLLSVYSPAERRMRAEG+PMLGSGVVFPILEEKFVCEPF IPDHFHRIIGIDLGFDHPN Sbjct: 241 EQLLSVYSPAERRMRAEGIPMLGSGVVFPILEEKFVCEPFDIPDHFHRIIGIDLGFDHPN 300 Query: 301 AIACVAWDPEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGR 360 AIACVAWD EKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGR Sbjct: 301 AIACVAWDAEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGR 360 Query: 361 RFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFL 420 RFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFL Sbjct: 361 RFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFL 420 Query: 421 KEMKMYHRKDGKIIDRNDDMISATRYALLMASRHARPGAVRNSGYYRSDTAKLTPDWFGS 480 KEMKMYHRKDGKI+DRNDDMISATRYALLMASRHARPGAVRNSGYYRSDTA+L PDWFGS Sbjct: 421 KEMKMYHRKDGKIVDRNDDMISATRYALLMASRHARPGAVRNSGYYRSDTARLIPDWFGS 480 Query: 481 IV 482 IV Sbjct: 481 IV 482 >gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2 # Family: family:all:1730 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720326;genbank:gi:24371583;genbank:GeneID :955800 Length = 517 Score = 268 bits (685), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 158/443 (35%), Positives = 231/443 (52%), Gaps = 27/443 (6%) Query: 23 MNQYTPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGAFIMACHLTGRYPEW-------- 74 + ++TPY Q +FI A + + M GN+ GK++TGA +A HLTGRYP Sbjct: 52 LYEFTPYSKQREFIDAGHDYPERCFMAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGK 111 Query: 75 ----WTGRKYDRPVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIPKEDIVETIRR 130 W G+++ PV W G + +T Q L G + + G G IPKEDI+ + Sbjct: 112 YGGEWKGKRFYEPVVFWVGGETNETVTKTTQRILCGRIEENDEPGYGSIPKEDIISWKKS 171 Query: 131 EGKPGCVQAVVVKH-----TSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECPKDIYTQ 185 P V ++VKH G+S FK Y + ++ G I +W DEE P IY + Sbjct: 172 PFFPNLVDHLLVKHHTPEGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGE 231 Query: 186 CVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVKEQLLS 245 +TRT G LTFTP G++++V FL++ Q +V+ + DA H + E KEQ+++ Sbjct: 232 GLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIA 291 Query: 246 VYSPAERRMRAEGVPMLGSGVVFPILEEKFVCEPFQIPDHFHRIIGIDLGFDHPNAIACV 305 Y ER RA G+P +GSG +F I EE C+PF+ PDHF+ I D G++HP A + Sbjct: 292 SYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNHPQAHIQL 351 Query: 306 AWDPEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGRRFVDL 365 WD + D +YL +S E + A ++IPV PHD +H+ G + Sbjct: 352 WWDKDADVFYLARVWKKS-ENTAVQAWGAVKSWANKIPVAWPHDGHQHE--KGGGEQLKT 408 Query: 366 LKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKM 425 D +++ E + P GGNSVE G+ + M G KVFNTC F +E ++ Sbjct: 409 QYADAGFSMLPEHATFP------DGGNSVESGIGELRDLMLEGRFKVFNTCEPFFEEFRL 462 Query: 426 YHR-KDGKIIDRNDDMISATRYA 447 YHR ++GKI+ NDD++ ATRY Sbjct: 463 YHRDENGKIVKTNDDVLDATRYG 485 >gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: terminase large subunit # Family: family:all:1730 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063734;genbank:gi:51236724;genbank:GeneID :2944239 Length = 499 Score = 265 bits (677), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 156/443 (35%), Positives = 232/443 (52%), Gaps = 27/443 (6%) Query: 23 MNQYTPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGAFIMACHLTGRYPEW-------- 74 + ++ PY Q +FI A + + M GN+ GK++TGA +A HLTGRYP Sbjct: 34 LYEFAPYSKQREFIDAGHDYPERCFMAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGK 93 Query: 75 ----WTGRKYDRPVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIPKEDIVETIRR 130 W G+++ PV W G + +T Q L G + + G G IPKEDI+ + Sbjct: 94 YGGEWKGKRFYEPVVFWIGGETNETVTKTTQRILCGRIEENDEPGYGSIPKEDIISWKKS 153 Query: 131 EGKPGCVQAVVVKHTSG-----GLSSLIFKSYEMSQDKFMGTAIDVIWLDEECPKDIYTQ 185 P V ++VKH + G+S FK Y + ++ G I +W DEE P IY + Sbjct: 154 PFFPNLVDHLLVKHHTADGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGE 213 Query: 186 CVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVKEQLLS 245 +TRT G LTFTP G++++V FL++ Q +V+ + DA H + E KEQ+++ Sbjct: 214 GLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIA 273 Query: 246 VYSPAERRMRAEGVPMLGSGVVFPILEEKFVCEPFQIPDHFHRIIGIDLGFDHPNAIACV 305 Y ER RA G+P +GSG +F I EE C+PF+ PDHF+ I D G++HP A + Sbjct: 274 SYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNHPQAHIQL 333 Query: 306 AWDPEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGRRFVDL 365 WD + D +YL +S E + A ++IPV PHD +H+ G + Sbjct: 334 WWDKDADVFYLARVWKKS-ENTAVQAWGAVKSWANKIPVAWPHDGHQHE--KGGGEQLKT 390 Query: 366 LKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKM 425 D +++ + + P GGNSVE G++ + M G KVFNTC F +E ++ Sbjct: 391 QYADAGFSMLPDHATFP------DGGNSVESGISELRDLMLEGRFKVFNTCEPFFEEFRL 444 Query: 426 YHR-KDGKIIDRNDDMISATRYA 447 YHR ++GKI+ NDD++ ATRY Sbjct: 445 YHRDENGKIVKTNDDVLDATRYG 467 >gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp2 # Family: family:all:1730 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneID :2777092 Length = 499 Score = 265 bits (676), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 156/443 (35%), Positives = 231/443 (52%), Gaps = 27/443 (6%) Query: 23 MNQYTPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGAFIMACHLTGRYPEW-------- 74 + ++TPY Q +FI A + + M GN+ GK++TGA +A HLTGRYP Sbjct: 34 LYEFTPYSKQREFIDAGHDYPERCFMAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGK 93 Query: 75 ----WTGRKYDRPVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIPKEDIVETIRR 130 W G+++ PV W G + +T Q L G + + G G IPKEDI+ + Sbjct: 94 YGGEWKGKRFYEPVVFWVGGETNETVTKTTQRILCGRIEENDEPGYGSIPKEDIISWKKS 153 Query: 131 EGKPGCVQAVVVKH-----TSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECPKDIYTQ 185 P V ++VKH G+S FK Y + ++ G I +W DEE P IY + Sbjct: 154 PFFPNLVDHLLVKHHTPEGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGE 213 Query: 186 CVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVKEQLLS 245 +TRT G LTFTP G++++V FL++ Q +V+ + DA H + E KEQ+++ Sbjct: 214 GLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIA 273 Query: 246 VYSPAERRMRAEGVPMLGSGVVFPILEEKFVCEPFQIPDHFHRIIGIDLGFDHPNAIACV 305 Y ER RA G+P +GSG +F I EE C+PF+ PDHF+ I D G++HP A + Sbjct: 274 SYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNHPQAHIQL 333 Query: 306 AWDPEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGRRFVDL 365 WD + D +YL +S E + A ++IPV PHD +H+ G + Sbjct: 334 WWDKDADVFYLARVWKKS-ENTAVQAWGAVKSWANKIPVAWPHDGHQHE--KGGGEQLKT 390 Query: 366 LKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKM 425 D +++ + + P GGNSVE G++ + M G K FNTC F +E ++ Sbjct: 391 QYADAGFSMLPDHATFP------DGGNSVESGISELRDLMLEGRFKAFNTCEPFFEEFRL 444 Query: 426 YHR-KDGKIIDRNDDMISATRYA 447 YHR ++GKI+ NDD++ ATRY Sbjct: 445 YHRDENGKIVKTNDDVLDATRYG 467 >gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: phage terminase large subunit # Family: family:all:1730 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516188;genbank:gi:89885991;genbank:GeneID :3964379 Length = 475 Score = 258 bits (658), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 161/465 (34%), Positives = 232/465 (49%), Gaps = 31/465 (6%) Query: 10 LVRELAERQKYFRMNQY--TPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGAFIMACHL 67 + E R+ R Y T Y WQ KFI S+ AQ+ + NR GKT T ++ A H Sbjct: 15 FINEQRRREHACRYRHYYGTRYDWQRKFIGLSAEYAQVALIAANRVGKTDTATYVDAVHA 74 Query: 68 TGRYPEWWTGRKYDRPVNCWAAGISTDTTRDILQSELLGDWKNPEAFGTGMIPKEDIVET 127 G YPE W+G ++ W G S + RD+LQ+ LLG K + G+IP E I +T Sbjct: 75 LGDYPEAWSGYRFSHAPVIWCLGYSGEKCRDLLQTPLLGR-KTDNGWQGGLIPGERIADT 133 Query: 128 IRREGKPGCVQAVVVKHTSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDEECPKD--IYTQ 185 G V+ ++H SG LS + F SY Q MG +D +DEE P+D IY Q Sbjct: 134 EAMTGTTNAVRTAYIRHVSGLLSKIQFWSYSQGQHALMGDCVDWFHIDEE-PRDPTIYPQ 192 Query: 186 CVTRTAT----TGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVKE 241 +TRTAT GG LTFTPE+G T++V F+ + P Q ++ W+DAPHLS +VK Sbjct: 193 VLTRTATGDRGKGGRGILTFTPENGRTDLVIGFMDNPSPAQTCINVGWDDAPHLSQKVKN 252 Query: 242 QLLSVYSPAERRMRAEGVPMLGSGVVFPILEEKFVCEPFQIPDHFHRIIGIDLGFDHPNA 301 LL+ + +R MR +G+PMLG G ++ + E+ C+PF +P H+ I G+D G+DHP A Sbjct: 253 DLLASFPAHQRDMRTKGIPMLGHGRIYDLGEDFITCDPFPVPAHWLVIDGMDFGWDHPQA 312 Query: 302 IACVAWDPEKDKYYL---YDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATS 358 + WD E + +Y+ Y R S A +I+ +P P D + + Sbjct: 313 HIQLVWDNENEMFYVTRAYKARQVS-PAEAYSAVSIW---AENVPTAWPSDGLMTEKGSG 368 Query: 359 GRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTN 418 ++ DD ++ +P P G SVE + M G KVF+ + Sbjct: 369 IQQ--KTYYDDAGFCMLRDPAQWP------DGSRSVE-----LHDLMRRGKFKVFSGLRD 415 Query: 419 FLKEMKMYHRKD-GKIIDRNDDMISATRYALLMASRHARPGAVRN 462 F E YHR + +I+ DD++ A RYA +M R V+N Sbjct: 416 FFDEYNFYHRDEKSRIVKMRDDILDAVRYAYMMRRYAVRYADVKN 460 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 51.2 bits (121), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/304 (20%), Positives = 114/304 (37%), Gaps = 38/304 (12%) Query: 158 EMSQDKFMGTAIDVIWLDEEC--PKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFL 215 E SQD G + + DE P+ Q R + TG ++ P +++ Sbjct: 121 EASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNWI 180 Query: 216 QDLKPGQFL-VHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGVPMLGSGVVFPILEEK 274 +K + L +H + D P L + +YS + +G+ ++ GV++ ++ Sbjct: 181 DQMKDKRALRIHFTMHDNPSLDSVTINRYERMYSGVFYQRYIQGLWVMSEGVIYDNFDKD 240 Query: 275 FVCEPFQIPDHFHRI-IGIDLGFDHPNAIACVAWDPEKDKYYLYDERSESGETLGMHADA 333 + ++P+HF + + D G +P A + W +YL E SG T Sbjct: 241 TMVVN-ELPNHFEKYYVSCDYGTLNPTAF--LLWGRNHGVWYLVKEYYYSGRTTSRQK-- 295 Query: 334 IYLKGGHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDG---KHG 390 + + HD + F+ ++ + ++ FS +G + Sbjct: 296 -------------TDEEYCHDL----KEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKA 338 Query: 391 GNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKMY--------HRKDGKIIDRNDDMIS 442 N V G+ T M G +K C N KE+ Y H +D K + ++D Sbjct: 339 KNDVLDGIRVTQTAMNEGKIKFSMNCPNLFKELASYVWDDKAAEHGED-KPVKQHDHACD 397 Query: 443 ATRY 446 A RY Sbjct: 398 AMRY 401 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 46.6 bits (109), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 69/327 (21%), Positives = 117/327 (35%), Gaps = 47/327 (14%) Query: 153 IFKSYEMSQ-DKFMGTAIDVIWLDEECPKDI-----YTQCVTRTATTGGIVYLTFTPEHG 206 +FK +Q D +G + D I DE D+ Q TP G Sbjct: 131 LFKLASAAQADSAVGRSYDFIIFDEAAISDVGGDAFRVQLRPTLDKPNSKALFISTPRGG 190 Query: 207 --LTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGVPMLGS 264 E D P +H ++ D P E+ S R E + Sbjct: 191 NWFKEFYAYGFDDTLPNWVSIHGTYRDNPRADLNDIEEARRTVSKNYFRQEYEADFSVFE 250 Query: 265 GVVFP-------ILEEKFVCEPFQIPDHFHRIIGIDLGFDHPNAIACVAWDPEKDKYYLY 317 G +F + + K + F+ + F ++GID+G+ P A+ + + + D YY+ Sbjct: 251 GQIFDTFNAIDHVKDLKGMRHFFKDDEAFETLLGIDVGYRDPTAVLTIKYHYDTDTYYVL 310 Query: 318 DERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYE 377 +E ++ +T HA I H I D +K D R FVD ++ YE Sbjct: 311 EEYQQAEKTTAQHAAYI----QHCI------DRYKVD-----RIFVDSAAAQFRQDLAYE 355 Query: 378 -PFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKMYH--------- 427 ++ P SV G+ + + G + V +C++ + ++ Y Sbjct: 356 HEIASAPAK------KSVLDGLACLQALFQQGKIIVDASCSSLIHALQNYKWDFQEGEEK 409 Query: 428 -RKDGKIIDRNDDMISATRYALLMASR 453 ++ D N + A RY + SR Sbjct: 410 LSREKPRHDANSHLCDALRYGIYSISR 436 >gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950600;genbank:gi:119953680;genbank:GeneI D:4643107 Length = 421 Score = 43.9 bits (102), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 73/303 (24%), Positives = 125/303 (41%), Gaps = 50/303 (16%) Query: 171 VIWLDE------ECPKDIYTQCVTRTATTGGIVYLTF----TPEHGLTEIVKDFLQDLKP 220 ++W++E E T + R G+ Y F P+ + + K + +P Sbjct: 131 IMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQP 190 Query: 221 -GQFLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGV-PMLGSGVV-FPILEEKFVC 277 F+ H+++ D P +S + ++ S E+R R E + +GSGVV F L+ + Sbjct: 191 DNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSGVVPFNNLQIE--- 247 Query: 278 EPFQIPDHFHRII-----GIDLGFDHPNAIACVAWDPEKDKYYLYDERSESGETLGMHAD 332 +IPD ++ +D G+ + +A V W +K K +Y G + Sbjct: 248 ---KIPDDLYKTFDNIRNAVDFGY-ATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREF 303 Query: 333 AIYLKG-GHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGG 391 A +LK G+Q D D A + + LK +H + + K G Sbjct: 304 ANWLKRRGYQ------SDEIYADSAEP--KSIAELKQEHGIKRI---------KGVKKGP 346 Query: 392 NSVEFGVNWM--LTRMENGDLKVFNTCTNFLKEMKMYHRKDG----KIIDRNDDMISATR 445 +SVE G W+ LT + + N F + + KDG ++ D+++ I ATR Sbjct: 347 DSVEHGEQWLDDLTAIVIDPNRTPNIAREF-ENIDYETDKDGNVKPRLEDKDNHTIDATR 405 Query: 446 YAL 448 YAL Sbjct: 406 YAL 408 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneID :5133130 Length = 419 Score = 42.0 bits (97), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 115/279 (41%), Gaps = 34/279 (12%) Query: 184 TQCVTRTATTGGIVYLTF----TPEHGLTEIVKDFLQDLKP-GQFLVHASWEDAPHLSPE 238 T + R G+ Y F P+ + + K + +P F+ H+++ + P ++ E Sbjct: 148 TNSLLRGELDNGLFYKFFYTYNPPKRKQSWVNKKYESSFQPDNTFVHHSTYLNNPFIAKE 207 Query: 239 VKEQLLSVYSPAERRMRAEGV-PMLGSGVVFPILEEKFVCEPFQIPDHFHRII-GIDLGF 296 E+ + + E R R E + +GSGVV P + P + D F I +D G+ Sbjct: 208 FIEEAKAAKAINELRYRWEYLGEAIGSGVV-PFNNLRIETIPKEQFDTFDNIRNAVDFGY 266 Query: 297 DHPNAIACVAWDPEKDKYYLYDERSESGETLGMHADAIYLKG-GHQIPVVVPHDAFKHDG 355 + +A V W +K K +Y G + A +LK G+Q D D Sbjct: 267 -ATDPLAFVRWHYDKKKRIIYAVDEHYGVQISNREFANWLKKKGYQ------SDEIYADS 319 Query: 356 ATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWM--LTRMENGDLKVF 413 A + + LK +H++ + K G +SVE G W+ L + + Sbjct: 320 AEP--KSIAELKQEHSIRRI---------KGVKKGPDSVEHGEQWLNDLDAIVIDPTRTP 368 Query: 414 NTCTNFLKEMKMYHRKDG----KIIDRNDDMISATRYAL 448 N F + + KDG ++ D+++ I ATRYAL Sbjct: 369 NIAREF-ENIDYQTDKDGNVKPRLEDKDNHTIDATRYAL 406 >gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240151;genbank:gi:66395816;genbank:GeneID :5133181 Length = 421 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 74/312 (23%), Positives = 125/312 (40%), Gaps = 52/312 (16%) Query: 171 VIWLDE------ECPKDIYTQCVTRTATTGGIVYLTF----TPEHGLTEIVKDFLQDLKP 220 ++W++E E T + R G+ Y F P+ + + K + +P Sbjct: 131 IMWIEELAEFKTEDEVTTITNSMLRGELDEGLFYKFFFSYNPPKRKQSWVNKKYESSFQP 190 Query: 221 -GQFLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGV-PMLGSGVV-FPILE-EKFV 276 F+ H+++ D P ++ + ++ + E R R E + +GSGVV F L+ EK Sbjct: 191 DNTFVHHSTYLDNPFIAKQFIDEAEAAKERNELRYRWEYLGEAIGSGVVPFNNLQIEKIP 250 Query: 277 CEPFQIPDHFHRIIGIDLGFDHPNAIACVAWDPEKDKYYLYDERSESGETLGMHADAIYL 336 E F+ D+ +D G+ + +A V W +K K +Y G + +L Sbjct: 251 DELFRSFDNIRN--AVDFGY-ATDPLAFVRWHYDKKKRVIYAVDEYYGVQISNRQFGKWL 307 Query: 337 -KGGHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVE 395 G+Q D D A + +D L+ +H + + K G +SVE Sbjct: 308 WSKGYQ------SDDIYADSAEP--KSIDELRKEHGIKRI---------KGVKKGPDSVE 350 Query: 396 FGVNWMLTRMENGDLKVF----NTCTNFLKEMK---MYHRKDG----KIIDRNDDMISAT 444 +G W+ DL N N +E + KDG K+ D+++ I AT Sbjct: 351 YGEQWL------NDLDAIVIDPNRTPNIAREFENIDFETDKDGNVKPKLEDKDNHTIDAT 404 Query: 445 RYALLMASRHAR 456 RYAL R + Sbjct: 405 RYALERDMRQNK 416 >gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795632;genbank:gi:28876409;genbank:GeneID :1257943 Length = 273 Score = 41.2 bits (95), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 90/215 (41%), Gaps = 27/215 (12%) Query: 195 GIVYLTF----TPEHGLTEIVKDFLQDLKPGQFLVHAS-WEDAPHLSPEVKEQLLSVYSP 249 G+ Y F P+ + + K + +P VHAS ++D P ++ E + + Sbjct: 8 GLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNPFIAKEFIAEAEATRER 67 Query: 250 AERRMRAEGV-PMLGSGVV-FPILEEKFVCEPFQIPDHFHRIIGIDLGFDHPNAIACVAW 307 +ERR R E + +GSGVV F L + + + Q+ D + GID G+ + +A V W Sbjct: 68 SERRYRWEYLGEAIGSGVVPFDNLRFERITDE-QVADFDNIRNGIDYGY-ATDPLAFVRW 125 Query: 308 DPEKDKYYLYDERSESGETLGMHADAIYLK-GGHQIPVVVPHDAFKHDGATSGRRFVDLL 366 +K K +Y G+ + A +L G+Q + A A L Sbjct: 126 HYDKKKNGIYAIDEYYGQKISNRQLAKWLTTKGYQSDEMFAESAEPKSNAE--------L 177 Query: 367 KDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWM 401 K++ + + K G +SVEFG W+ Sbjct: 178 KNEFGIKRI---------KGVKKGPDSVEFGERWL 203 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 40.0 bits (92), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 68/311 (21%), Positives = 116/311 (37%), Gaps = 49/311 (15%) Query: 158 EMSQDKFMGTAIDVIWLDEEC--PKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFL 215 E SQD G + I+ DE P+ Q R + TG + P+ +++ Sbjct: 127 ESSQDLIQGLTLAGIFFDEVALMPESFVNQGTGRCSVTGSKWWFNCNPDGPYHWFKVNWI 186 Query: 216 QDLKPGQFL-VHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGVPMLGSGVVFPIL-EE 273 + L +H +D LS +K++ S Y + +G+ + G+V+ + ++ Sbjct: 187 DKAETKNMLYLHFDMDDNLSLSENIKKRYRSQYQGVFYQRYIQGLWTVAEGIVYDMFSKD 246 Query: 274 KFVCEPFQIPDHFHRIIGIDLGFDHPNAIACVAWDPEKD---KYYLYDERSESG------ 324 K V + + +D G NA + W EKD KYYL E SG Sbjct: 247 KHVVSTLPEMSKLGKYVSVDYG--TQNATVFLLW--EKDIIGKYYLTREYYYSGRDENVQ 302 Query: 325 ETLGMHADAI--YLKGGHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNP 382 +T +AD + +L + +++ S F+ LK Sbjct: 303 KTNAEYADDLTAWLGDTNIDRIIID---------PSAASFIAELK--------------K 339 Query: 383 PGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKMY-------HRKDGKIID 435 G K N+V G+ ++ + + + V +C N LKE Y + K I Sbjct: 340 RGYKIKKARNNVLEGIRFVGSMLGQEKIAVHESCVNTLKEFHAYVWDEKASANGEDKPIK 399 Query: 436 RNDDMISATRY 446 + D + A RY Sbjct: 400 QFDHAMDALRY 410 >gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: putative phage terminase large subunit B # Family: family:all:54 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529870;genbank:gi:90592610;genbank:GeneID :3974524 Length = 409 Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 65/145 (44%), Gaps = 10/145 (6%) Query: 181 DIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASW--EDAPHLSPE 238 D++ + + R + G + P+ + D++ + P + ++ +D LS Sbjct: 139 DVFQEILQRCSIEGARIICDTNPDIPTHWLKTDYIDNHDPKARIKSFTFTIDDNTFLS-- 196 Query: 239 VKEQLLSVYSPAERRMRAE----GVPMLGSGVVFPIL-EEKFVCEPFQIPDHFHRIIGID 293 K+ + S+ + R M + G + G G+V+ ++ V ++PD +G+D Sbjct: 197 -KDYVESIKAATPRGMFYDRGILGQWVTGDGIVYQDFNKDTMVIPKNRVPDGLDYYVGVD 255 Query: 294 LGFDHPNAIACVAWDPEKDKYYLYD 318 G++HPN I + D + + Y L D Sbjct: 256 WGYEHPNPIILLGDDKDGNTYVLED 280 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 37.4 bits (85), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 82/220 (37%), Gaps = 53/220 (24%) Query: 248 SPAERRMRAEGVPMLGSGVVFPILEEKFVCEPFQIPDHFHRI----IGIDLGFDH-PNAI 302 +P + A G + G+VF E + + F I RI G+D GF H P Sbjct: 222 NPRRAAVVANGDWGVAEGLVF----ENYEVKDFDIVSTIKRIGETTAGLDFGFTHDPTTF 277 Query: 303 ACVAWDPEKDKYYLYDERSESGETLGMHADAIY---LKGGHQIPVVVPHDA----FKHDG 355 +A D EK + ++Y E E M D I+ + Q V+ A Sbjct: 278 PRLAVDLEKKELWIYAEHYEHA----MTTDDIFKMIVDADMQNAVITADSAEQRLIAELQ 333 Query: 356 ATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNT 415 A RR V +K G S+ G+++M + + + + Sbjct: 334 AKGIRRLVPSIK----------------------GKGSINAGIDFM----KQFKIYIHPS 367 Query: 416 CTNFLKEMKMY---HRKDGKI----IDRNDDMISATRYAL 448 C ++E Y KDGK ID N+ +I A RYAL Sbjct: 368 CIKTIEEFDTYIYKQDKDGKWLNEPIDSNNHIIDAIRYAL 407 >gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950664;genbank:gi:119967835;genbank:GeneI D:4643176 Length = 446 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 74/322 (22%), Positives = 124/322 (38%), Gaps = 62/322 (19%) Query: 171 VIWLDE------ECPKDIYTQCVTRTATTGGIVYLTF----TPEHGLTEIVKDFLQDLKP 220 ++W++E E T + R G+ Y F P+ + + K + +P Sbjct: 130 IMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETSFQP 189 Query: 221 -GQFLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGV-PMLGSGVV-FPILE-EKFV 276 F+ H+++ D P +S + ++ S E+R R E + +GSGVV F L+ EK Sbjct: 190 DNTFVHHSTYLDNPFISKQFIQEAESAKERNEQRYRWEYMGEAIGSGVVPFNNLQIEKIP 249 Query: 277 CEPFQIPDHFHRIIGIDLGFDHP-----------------------NAIACVAWDPEKDK 313 E ++ D+ + L P + +A V W +K K Sbjct: 250 DELYKSFDNIRNAVDFGLTKTAPLHSDVYSKLGEHISGVRKKACATDPLAFVRWHYDKKK 309 Query: 314 YYLYDERSESGETLGMHADAIYLKG-GHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNL 372 +Y G + A +LK G+Q D D A + + LK +H + Sbjct: 310 RIIYAVDEHYGVQISNREFANWLKRRGYQ------SDEIYADSAEP--KSIAELKQEHGI 361 Query: 373 NVVYEPFSNPPGPDGKHGGNSVEFGVNWM--LTRMENGDLKVFNTCTNFLKEMKMYHRKD 430 + K G +SVE G W+ LT + + N F + + KD Sbjct: 362 KRI---------KGVKKGPDSVEHGEQWLDDLTAIVIDPNRTPNIAREF-ENIDYETDKD 411 Query: 431 G----KIIDRNDDMISATRYAL 448 G ++ D+++ I ATRYAL Sbjct: 412 GNVKPRLEDKDNHTIDATRYAL 433 >gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240816;genbank:gi:66394679;genbank:GeneID :5133852 Length = 421 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 29/248 (11%) Query: 223 FLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGV-PMLGSGVVFPILEEKFVCEPFQ 281 ++ H+++ + P +S + ++ S E+R R E + +GSGVV P + P + Sbjct: 194 YVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVV-PFNNLRIEEIPQR 252 Query: 282 IPDHFHRII-GIDLGFDHPNAIACVAWDPEKDKYYLYDERSESGETLGMHADAIYLKG-G 339 D F I +D G+ + +A V W +K K +Y G + A +LK G Sbjct: 253 QYDTFDNIRNAVDFGY-ATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKG 311 Query: 340 HQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVN 399 +Q V A A LK +H + + K G +SVEFG Sbjct: 312 YQSDEVFADSAEPKSIAE--------LKQEHGIKKIKG---------VKKGADSVEFGEQ 354 Query: 400 WM--LTRMENGDLKVFNTCTNFLKEMKMYHRKDG----KIIDRNDDMISATRYALLMASR 453 W+ L + + N F + + KDG K+ D+++ I ATRYAL R Sbjct: 355 WLDDLDAIVIDPRRTPNIAREF-ENIDYETDKDGNVKPKLEDKDNHTIDATRYALERDMR 413 Query: 454 HARPGAVR 461 + +R Sbjct: 414 QNKLSILR 421 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 34.7 bits (78), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/217 (21%), Positives = 82/217 (37%), Gaps = 37/217 (17%) Query: 244 LSVYSPAERRMRAEGVPMLGSGVVFPILEEKFVCEPFQIPDHFHRII----GIDLGFDH- 298 L + +P R+ +G + G+VF + F E F + F R G+D GF Sbjct: 214 LYIKNPRRARIVCDGDWGVAEGLVF----DNFKVEDFDWFEEFKRTQEITHGMDFGFSQD 269 Query: 299 PNAIACVAWDPEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATS 358 P + D + K ++YDE + + KG + + + A Sbjct: 270 PTTVVSTVVDLKNKKLFIYDEHYKKAMLTDDIKQMLIKKGLGDVDIAADYGA-------G 322 Query: 359 GRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTN 418 G R + LK + G N++ G+ ++ + ++ + +C + Sbjct: 323 GDRVISELKSKGIKGI----------RKALKGANTILPGIQFI----QGFEVIIHPSCEH 368 Query: 419 FLKEMKMY---HRKDGKI----IDRNDDMISATRYAL 448 ++E Y DGK ID N+ +I A RY+L Sbjct: 369 AIEEFNTYTFDQDNDGKWLNKPIDANNHIIDALRYSL 405 >gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240743;genbank:gi:66396415;genbank:GeneID :5133804 Length = 421 Score = 34.7 bits (78), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 29/248 (11%) Query: 223 FLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGV-PMLGSGVVFPILEEKFVCEPFQ 281 ++ H+++ + P +S + ++ S E+R R E + +GSGVV P + P + Sbjct: 194 YVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVV-PFNNLRIEEIPQR 252 Query: 282 IPDHFHRII-GIDLGFDHPNAIACVAWDPEKDKYYLYDERSESGETLGMHADAIYLKG-G 339 D F I +D G+ + +A V W +K K +Y G + A +LK G Sbjct: 253 QYDTFDNIRNAVDFGY-ATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKKKG 311 Query: 340 HQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVN 399 +Q D D A + + LK +H + + K G +SVEFG Sbjct: 312 YQ------SDEIFADSAEP--KSIAELKQEHGIKKIKG---------VKKGADSVEFGEQ 354 Query: 400 WM--LTRMENGDLKVFNTCTNFLKEMKMYHRKDG----KIIDRNDDMISATRYALLMASR 453 W+ L + + N F + + KDG K+ D+++ I ATRYAL R Sbjct: 355 WLDDLDAIVIDPRRTPNIAREF-ENIDYETDKDGNVKPKLEDKDNHTIDATRYALERDMR 413 Query: 454 HARPGAVR 461 + +R Sbjct: 414 QNKLSILR 421 >gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240671;genbank:gi:66396341;genbank:GeneID :5133763 Length = 421 Score = 34.7 bits (78), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 29/248 (11%) Query: 223 FLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGV-PMLGSGVVFPILEEKFVCEPFQ 281 ++ H+++ + P +S + ++ S E+R R E + +GSGVV P + P + Sbjct: 194 YVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVV-PFNNLRIEEIPQR 252 Query: 282 IPDHFHRII-GIDLGFDHPNAIACVAWDPEKDKYYLYDERSESGETLGMHADAIYLKG-G 339 D F I +D G+ + +A V W +K K +Y G + A +LK G Sbjct: 253 QYDTFDNIRNAVDFGY-ATDPLAFVRWHYDKKKRVIYAMDEYYGVQISNREFANWLKKKG 311 Query: 340 HQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVN 399 +Q D D A + + LK +H + + K G +SVEFG Sbjct: 312 YQ------SDEIFADSAEP--KSIAELKQEHGIKKIKG---------VKKGADSVEFGEQ 354 Query: 400 WM--LTRMENGDLKVFNTCTNFLKEMKMYHRKDG----KIIDRNDDMISATRYALLMASR 453 W+ L + + N F + + KDG K+ D+++ I ATRYAL R Sbjct: 355 WLDDLDAIVIDPRRTPNIAREF-ENIDYETDKDGNVKPKLEDKDNHTIDATRYALERDMR 413 Query: 454 HARPGAVR 461 + +R Sbjct: 414 QNKLSILR 421 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 26/165 (15%) Query: 166 GTAIDVIWLDEECPKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFL----QDLKPG 221 GTA+ +++ K+++++C + G + + PE+ + + KD++ Q L G Sbjct: 125 GTALHNMFI-----KEVFSRC----SHKGARILIDTNPENPMHPVKKDYIDKSGQRLSNG 175 Query: 222 QFLVHA---SWEDAPHLSPEVKEQLLSVYSPA----ERRMRAEGVPMLGSGVVFPILEEK 274 + + A + D L E E +++ +P +R + + V GVV+ +EK Sbjct: 176 RLNIKAFQFTLFDNTFLDEEYIESIIAS-TPTGMFTDRDIYGKWVS--AEGVVYKDFKEK 232 Query: 275 ---FVCEPFQIPDHFHRIIGIDLGFDHPNAIACVAWDPEKDKYYL 316 E F+ + G+D G++H +I VA D + +KY + Sbjct: 233 VHYITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVI 277 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 26/165 (15%) Query: 166 GTAIDVIWLDEECPKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFL----QDLKPG 221 GTA+ +++ K+++++C + G + + PE+ + + KD++ Q L G Sbjct: 125 GTALHNMFI-----KEVFSRC----SHKGARILIDTNPENPMHPVKKDYIDKSGQRLSNG 175 Query: 222 QFLVHA---SWEDAPHLSPEVKEQLLSVYSPA----ERRMRAEGVPMLGSGVVFPILEEK 274 + + A + D L E E +++ +P +R + + V GVV+ +EK Sbjct: 176 RLNIKAFQFTLFDNTFLDEEYIESIIAS-TPTGMFTDRDIYGKWVS--AEGVVYKDFKEK 232 Query: 275 ---FVCEPFQIPDHFHRIIGIDLGFDHPNAIACVAWDPEKDKYYL 316 E F+ + G+D G++H +I VA D + +KY + Sbjct: 233 VHYITEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVI 277 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 50/256 (19%) Query: 213 DFLQDLKPGQFLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGV-----PMLGSGV- 266 D ++D +P Q++ H+++ PE L S + + R +R + LG V Sbjct: 204 DVIRD-EPSQYVHHSTFIPIALHHPE---WLGSTWLESARLVRDKNPNRYEWEFLGRNVN 259 Query: 267 ----VFPILEEKFVCEPFQIPDHFHRIIGIDLGFD-HPNAIACVAWDPEKDKYYLYDERS 321 VFP ++ + F + D G D G+ P+ V +D ++D Y+ DE Sbjct: 260 TGNEVFPNAVQEHIT--FDMIDGLRPYEGFDEGYTADPSVWLRVFYDEQRDTVYITDELV 317 Query: 322 -ESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFS 380 + +T + D + ++ G V G ++ R +D ++D L V S Sbjct: 318 MKRYKTKALAKDILNVQEGSYNIV---------RGDSANPRVLDEMRD---LGVNALAVS 365 Query: 381 NPPGPDGKHGGNSVEFGVNWMLTRMENGDLKVFNTCTNFLKEMKMY--------HRKDGK 432 P NSV G NW+ R++ + + C N +E Y +RK G Sbjct: 366 KSP--------NSVPHGTNWLANRIK---IVIDFKCPNTWREFSSYALLPDGVGNRKHG- 413 Query: 433 IIDRNDDMISATRYAL 448 D+++ I TRYAL Sbjct: 414 FPDKDNHTIDTTRYAL 429 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 33.9 bits (76), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 26/165 (15%) Query: 166 GTAIDVIWLDEECPKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFL----QDLKPG 221 GTA+ +++ K+++++C + G + + PE+ + + KD++ Q L G Sbjct: 126 GTALHNMFI-----KEVFSRC----SYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNG 176 Query: 222 QFLVHA---SWEDAPHLSPEVKEQLLSVYSPA----ERRMRAEGVPMLGSGVVFPILEEK 274 + + A + D L E E +++ +P +R + + V GVV+ +EK Sbjct: 177 RLNIKAFQFTLFDNTFLDEEYIESIIAS-TPTGMFTDRDIYGKWVS--AEGVVYKDFKEK 233 Query: 275 ---FVCEPFQIPDHFHRIIGIDLGFDHPNAIACVAWDPEKDKYYL 316 E F+ + G+D G++H +I VA D + +KY + Sbjct: 234 VHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVI 278 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 26/165 (15%) Query: 166 GTAIDVIWLDEECPKDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFL----QDLKPG 221 GTA+ +++ K+++++C + G + + PE+ + + KD++ Q L G Sbjct: 128 GTALHNMFI-----KEVFSRC----SYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNG 178 Query: 222 QFLVHA---SWEDAPHLSPEVKEQLLSVYSPA----ERRMRAEGVPMLGSGVVFPILEEK 274 + + A + D L E E +++ +P +R + + V GVV+ +EK Sbjct: 179 RLNIKAFQFTLFDNTFLDEEYIESIIAS-TPTGMFTDRDIYGKWVS--AEGVVYKDFKEK 235 Query: 275 ---FVCEPFQIPDHFHRIIGIDLGFDHPNAIACVAWDPEKDKYYL 316 E F+ + G+D G++H +I VA D + +KY + Sbjct: 236 VHYIKEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVI 280 >gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240381;genbank:gi:66396048;genbank:GeneID :5133401 Length = 421 Score = 32.3 bits (72), Expect = 0.011, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 29/242 (11%) Query: 223 FLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGV-PMLGSGVVFPILEEKFVCEPFQ 281 F+ H+++ + P +S + ++ S E+R R E + +GSGVV P + P Sbjct: 194 FVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVV-PFNNLRIEEIPQG 252 Query: 282 IPDHFHRII-GIDLGFDHPNAIACVAWDPEKDKYYLYDERSESGETLGMHADAIYLKG-G 339 D F I +D G+ + +A V W +K K +Y G + A +LK G Sbjct: 253 QYDTFDNIRNAVDFGY-ATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKG 311 Query: 340 HQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVN 399 +Q D D A + + LK +H + V K G +SVE+G Sbjct: 312 YQ------SDEIFADSAEP--KSIAELKQEHGIKKVKA---------VKKGADSVEYGEQ 354 Query: 400 WM--LTRMENGDLKVFNTCTNFLKEMKMYHRKDG----KIIDRNDDMISATRYALLMASR 453 W+ L + + N F + + KDG K+ D+++ I ATRYAL R Sbjct: 355 WLDDLEAIVIDPRRTPNIAREF-ENIDYQTDKDGNVKPKLEDKDNHAIDATRYALERDMR 413 Query: 454 HA 455 + Sbjct: 414 QS 415 >gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240307;genbank:gi:66395973;genbank:GeneID :5133377 Length = 421 Score = 32.3 bits (72), Expect = 0.014, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 29/242 (11%) Query: 223 FLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAEGV-PMLGSGVVFPILEEKFVCEPFQ 281 F+ H+++ + P +S + ++ S E+R R E + +GSGVV P + P Sbjct: 194 FVHHSTYLNNPFISKQFIQEAESAKKRNEQRYRWEYMGEAIGSGVV-PFNNLRIEEIPQG 252 Query: 282 IPDHFHRII-GIDLGFDHPNAIACVAWDPEKDKYYLYDERSESGETLGMHADAIYLKG-G 339 D F I +D G+ + +A V W +K K +Y G + A +LK G Sbjct: 253 QYDTFDNIRNAVDFGY-ATDPLAFVRWHYDKKKRVIYAMDEHYGVQISNREFANWLKKKG 311 Query: 340 HQIPVVVPHDAFKHDGATSGRRFVDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVN 399 +Q D D A + + LK +H + V K G +SVE+G Sbjct: 312 YQ------SDEIFADSAEP--KSIAELKQEHGIKKVKA---------VKKGADSVEYGEQ 354 Query: 400 WM--LTRMENGDLKVFNTCTNFLKEMKMYHRKDG----KIIDRNDDMISATRYALLMASR 453 W+ L + + N F + + KDG K+ D+++ I ATRYAL R Sbjct: 355 WLDDLEAIVIDPRRTPNIAREF-ENIDYQTDKDGNVKPKLEDKDNHAIDATRYALERDMR 413 Query: 454 HA 455 + Sbjct: 414 QS 415 >gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240228;genbank:gi:66395894;genbank:GeneID :5133253 Length = 407 Score = 31.6 bits (70), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/146 (19%), Positives = 66/146 (45%), Gaps = 12/146 (8%) Query: 180 KDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASW--EDAPHLSP 237 ++++ + +R + TG + + P+H ++KD++++ P ++ + +D L+ Sbjct: 139 EEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLND 198 Query: 238 EVKEQL-LSVYSPAERRMRAEGVPMLGSGVV---FPILEEKFVCEPFQ---IPDHFHRII 290 KE + S S G+ + G GVV F + E + I ++F Sbjct: 199 RYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYF---A 255 Query: 291 GIDLGFDHPNAIACVAWDPEKDKYYL 316 G+D G++H +I + + + Y++ Sbjct: 256 GVDWGYEHYGSIVLIGRGIDGNFYFI 281 >gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004370;genbank:gi:122891825;genbank:Ge neID:4712368 Length = 407 Score = 31.6 bits (70), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/146 (19%), Positives = 66/146 (45%), Gaps = 12/146 (8%) Query: 180 KDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASW--EDAPHLSP 237 ++++ + +R + TG + + P+H ++KD++++ P ++ + +D L+ Sbjct: 139 EEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLND 198 Query: 238 EVKEQL-LSVYSPAERRMRAEGVPMLGSGVV---FPILEEKFVCEPFQ---IPDHFHRII 290 KE + S S G+ + G GVV F + E + I ++F Sbjct: 199 RYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYF---A 255 Query: 291 GIDLGFDHPNAIACVAWDPEKDKYYL 316 G+D G++H +I + + + Y++ Sbjct: 256 GVDWGYEHYGSIVLIGRGIDGNFYFI 281 >gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: TerL-like protein # Family: family:all:54 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039811;genbank:gi:126011061;genbank:Ge neID:4818267 Length = 459 Score = 30.8 bits (68), Expect = 0.037, Method: Compositional matrix adjust. Identities = 62/276 (22%), Positives = 106/276 (38%), Gaps = 50/276 (18%) Query: 142 VKHTSGGLSSLIFKSYEMSQDKFMGTAIDVIWLDE-----ECPKDIYTQCVTRTATTGGI 196 ++H G L + + +D++WL+E E ++ + R G Sbjct: 86 IRHKKTGAEFLFYGIARNLNEIKSTEGVDILWLEEAQYLTEEQWNVINPTIRRE---GSQ 142 Query: 197 VYLTFTPEHGLTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVKEQLLSVYS--PAERRM 254 ++L + P+ I ++F+ + +W + P LS + + + Y P Sbjct: 143 IWLIWNPDQYTDFIYQNFVVNPPADCLSKQINWTENPFLSDTMLKVIYDEYQRDPKLAEH 202 Query: 255 RAEGVPMLGSGVVFPILEEKFVCEPFQIPDHFHRIIGIDL------GFD------HPNAI 302 G P +G I++ ++V H+ +G + GFD NAI Sbjct: 203 VYGGAPKMGGDKA--IIQLQYVLAAIDA----HKKLGWKIEGSKRTGFDIADDGDDANAI 256 Query: 303 A-----CVAWDPEKDKYYLYDERSESGETLGMHADAIYLKGGHQIPVVVPHDAFKHDGAT 357 V W E D L DE +S + HA L+ G I D+ GA Sbjct: 257 VDAIGNVVVWAEEWDG--LEDELLKSSTKVFNHA----LEKGSSIIF----DSIGV-GAH 305 Query: 358 SGRRFVDLLKDDHNLNVVYEPFSNPPG----PDGKH 389 +G +F +L + +L ++YEPF N G PDG + Sbjct: 306 AGSKFSEL-NEARSLEIIYEPF-NAGGAVYDPDGTY 339 >gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: conserved hypothetical protein ORF004 # Family: family:all:54 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294421;genbank:gi:149408318;genbank:Ge neID:5237186 Length = 460 Score = 28.5 bits (62), Expect = 0.18, Method: Compositional matrix adjust. Identities = 51/270 (18%), Positives = 97/270 (35%), Gaps = 58/270 (21%) Query: 142 VKHTSGGLSSLIFKSYEMSQDKFMGT-AIDVIWLDEE--CPKDIYTQCVTRTATTGGIVY 198 +KH G S +F + + T ID++WL+E ++ + ++ Sbjct: 86 IKHKRTG-SEFLFYGIARNLSEIKSTEGIDILWLEEAHYLTQEQWEVIEPTIRKENSEIW 144 Query: 199 LTFTPEHGLTEIVKDFLQDLKPGQFLVHASWEDAPHLSPEVKEQLLSVYSPAERRMRAE- 257 + F P + ++F+ F+ +W + P LS E +L V A R + + Sbjct: 145 IIFNPNEVTDFVYQNFVVKPPKDAFVKMINWNENPFLS----ETMLKVIHEAYERDKDQA 200 Query: 258 -----GVPMLGSGVVFPILEEKFVCEPFQIPDHFHRIIGIDLGFDHPNAIACVAWDPEKD 312 G+P G ++ KF+ H+ +G W+P Sbjct: 201 EHIYGGIPKTGGDK--SVINLKFILAAIDA----HKKLG---------------WEPAGS 239 Query: 313 K---YYLYDERSESGETLGMHADAI------------YLKGGHQI-------PVVVPHDA 350 K + + D+ ++ T MH + I LK ++ V +D+ Sbjct: 240 KRIGFDVADDGEDANATTLMHGNVIMEVDEWDGLEDELLKSSSRVYNLAKMKGASVTYDS 299 Query: 351 FKHDGATSGRRFVDLLKDDHNLNVVYEPFS 380 GA G +F +L + + Y+PF+ Sbjct: 300 IGV-GAHVGSKFAELNDSSPDFKLTYDPFN 328 >gi|19787|lcl|protein:vir:2340 Length: 562 # NCBI annotation: gp10 # Family: family:all:1551 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075277;genbank:gi:12657864;genbank:GeneID :920069 Length = 562 Score = 28.1 bits (61), Expect = 0.25, Method: Compositional matrix adjust. Identities = 11/26 (42%), Positives = 17/26 (65%) Query: 104 LLGDWKNPEAFGTGMIPKEDIVETIR 129 L D+ NPE + +G +PKED+ +R Sbjct: 398 FLIDYWNPENYPSGEVPKEDVDAVVR 423 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 27.7 bits (60), Expect = 0.30, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Query: 392 NSVEFGVNWMLTRMENGDL---KVFNTCTNFLKEMKMYHRKDGKIIDRNDDMISA 443 +S+E G+ + +ENG + + T +F+ M+ R+DGK+ D I+A Sbjct: 457 HSLENGIARLRILVENGRILFHRGHQTTEDFITSMQSLERRDGKMHGHTPDYIAA 511 >gi|16473|lcl|protein:vir:7767 Length: 566 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817601;genbank:gi:29566031;genbank:GeneID :1259225 Length = 566 Score = 26.6 bits (57), Expect = 0.69, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 15/20 (75%) Query: 110 NPEAFGTGMIPKEDIVETIR 129 NPE + +G +P+ED+ T+R Sbjct: 408 NPEDYESGEVPREDVDATVR 427 >gi|4548|lcl|protein:vir:94970 Length: 473 # NCBI annotation: putative phage terminase large subunit # Family: family:all:144 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239275;genbank:gi:66392134;genbank:GeneID :5076615 Length = 473 Score = 26.6 bits (57), Expect = 0.76, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 405 MENGDLKVFNTCTNFLKEMKMYHR--KDGKIIDR--NDDMISATRYALLMASRHAR 456 MEN VFNTC N ++ + K+ + +D D + RY LL A++ + Sbjct: 411 MENPGFFVFNTCFNTIRTIPNLQNSPKNSEDLDTAGEDHIWDVIRYRLLKAAKQIK 466 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 2/32 (6%) Query: 418 NFLKEMKMYHRKD--GKIIDRNDDMISATRYA 447 ++L+E+ MY R + GK +D+N+ + +RYA Sbjct: 397 SWLQEIGMYVRDENSGKPVDKNNHAMDTSRYA 428 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Query: 363 VDLLKDDHNLNVVYEPFSNPPGPDGKHGGNSVEFGVNWMLTRMEN 407 V++L DDH LN PPG + E G+NW+ ++ ++ Sbjct: 5 VNVLSDDHPLNEGKTIVIKPPGSLER----KTEEGINWIKSQWDD 45 >gi|4157|lcl|protein:vir:94665 Length: 448 # NCBI annotation: terminase large subunit # Family: family:all:662 # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579204;genbank:gi:93007440;genbank:GeneI D:5076784 Length = 448 Score = 23.5 bits (49), Expect = 6.5, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Query: 22 RMNQYTPYGWQEKFIAASSNCAQLLAMTGNRCGKTYTGAFIMACHLTG 69 R +++ PY WQ ++ L + G GKT A M H+ G Sbjct: 32 RWDRWKPYPWQIPPGEVETH-GMWLQLGGRGTGKTDGCARFMVSHVNG 78 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.137 0.435 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 239,584 Number of Sequences: 514 Number of extensions: 11719 Number of successful extensions: 99 Number of sequences better than 100.0: 40 Number of HSP's better than 100.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 57 length of query: 482 length of database: 206,069 effective HSP length: 75 effective length of query: 407 effective length of database: 167,519 effective search space: 68180233 effective search space used: 68180233 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)