BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_010237.1_cdsid_YP_001648943.1 [gene=ORF55] [protein=putative large subunit terminase] [protein_id=YP_001648943.1] [location=31241..32947] (568 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 1195 0.0 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 1195 0.0 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 1195 0.0 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 1195 0.0 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 1195 0.0 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 1195 0.0 gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: te... 232 1e-62 gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bce... 227 2e-61 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 62 2e-11 gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: ter... 52 3e-08 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 50 6e-08 gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp... 49 2e-07 gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: t... 48 4e-07 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 47 4e-07 gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: g... 44 4e-06 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 44 4e-06 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 44 6e-06 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 44 6e-06 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 44 6e-06 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 43 1e-05 gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp... 42 2e-05 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 41 3e-05 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 41 3e-05 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 41 3e-05 gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: ter... 38 4e-04 gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: te... 29 0.16 gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hyp... 28 0.24 gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: put... 28 0.34 gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf... 27 0.63 gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: ter... 27 0.65 gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: OR... 26 0.99 gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hyp... 26 0.99 gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: termin... 26 1.2 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 25 3.0 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 24 3.8 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 24 3.8 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 24 3.9 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 24 4.4 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 23 6.3 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 23 6.3 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 23 6.3 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 23 6.9 gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 23 8.3 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID: 1262208 Length = 568 Score = 1195 bits (3091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/568 (99%), Positives = 566/568 (99%) Query: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ Sbjct: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 Query: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP Sbjct: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 Query: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY Sbjct: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 Query: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEIAASGLLLTAQDYKFHF 240 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEI ASGLLLTAQDYKFHF Sbjct: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHF 240 Query: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ Sbjct: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 Query: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSLPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 EFPSTPQEAFLTSGRRVFSAESTLQAESFCS PMIVYDIEPVTGAKTKAQSLREGNKNEL Sbjct: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSPPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 Query: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL Sbjct: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 Query: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW Sbjct: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 Query: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM Sbjct: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 Query: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 IAQEMRARMPVRVKQKTDKRRTTHWMAH Sbjct: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneID :2653342 Length = 568 Score = 1195 bits (3091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/568 (99%), Positives = 566/568 (99%) Query: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ Sbjct: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 Query: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP Sbjct: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 Query: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY Sbjct: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 Query: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEIAASGLLLTAQDYKFHF 240 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEI ASGLLLTAQDYKFHF Sbjct: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHF 240 Query: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ Sbjct: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 Query: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSLPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 EFPSTPQEAFLTSGRRVFSAESTLQAESFCS PMIVYDIEPVTGAKTKAQSLREGNKNEL Sbjct: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSPPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 Query: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL Sbjct: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 Query: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW Sbjct: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 Query: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM Sbjct: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 Query: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 IAQEMRARMPVRVKQKTDKRRTTHWMAH Sbjct: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID: 1262002 Length = 568 Score = 1195 bits (3091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/568 (99%), Positives = 566/568 (99%) Query: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ Sbjct: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 Query: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP Sbjct: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 Query: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY Sbjct: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 Query: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEIAASGLLLTAQDYKFHF 240 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEI ASGLLLTAQDYKFHF Sbjct: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHF 240 Query: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ Sbjct: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 Query: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSLPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 EFPSTPQEAFLTSGRRVFSAESTLQAESFCS PMIVYDIEPVTGAKTKAQSLREGNKNEL Sbjct: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSPPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 Query: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL Sbjct: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 Query: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW Sbjct: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 Query: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM Sbjct: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 Query: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 IAQEMRARMPVRVKQKTDKRRTTHWMAH Sbjct: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneID :935714 Length = 568 Score = 1195 bits (3091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/568 (99%), Positives = 566/568 (99%) Query: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ Sbjct: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 Query: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP Sbjct: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 Query: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY Sbjct: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 Query: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEIAASGLLLTAQDYKFHF 240 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEI ASGLLLTAQDYKFHF Sbjct: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHF 240 Query: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ Sbjct: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 Query: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSLPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 EFPSTPQEAFLTSGRRVFSAESTLQAESFCS PMIVYDIEPVTGAKTKAQSLREGNKNEL Sbjct: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSPPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 Query: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL Sbjct: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 Query: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW Sbjct: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 Query: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM Sbjct: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 Query: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 IAQEMRARMPVRVKQKTDKRRTTHWMAH Sbjct: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneID :2653280 Length = 568 Score = 1195 bits (3091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/568 (99%), Positives = 566/568 (99%) Query: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ Sbjct: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 Query: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP Sbjct: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 Query: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY Sbjct: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 Query: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEIAASGLLLTAQDYKFHF 240 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEI ASGLLLTAQDYKFHF Sbjct: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHF 240 Query: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ Sbjct: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 Query: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSLPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 EFPSTPQEAFLTSGRRVFSAESTLQAESFCS PMIVYDIEPVTGAKTKAQSLREGNKNEL Sbjct: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSPPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 Query: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL Sbjct: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 Query: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW Sbjct: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 Query: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM Sbjct: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 Query: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 IAQEMRARMPVRVKQKTDKRRTTHWMAH Sbjct: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:GeneI D:4397501 Length = 568 Score = 1195 bits (3091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/568 (99%), Positives = 566/568 (99%) Query: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ Sbjct: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQ 60 Query: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP Sbjct: 61 LFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVP 120 Query: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY Sbjct: 121 FDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKY 180 Query: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEIAASGLLLTAQDYKFHF 240 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEI ASGLLLTAQDYKFHF Sbjct: 181 PAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQEITASGLLLTAQDYKFHF 240 Query: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ Sbjct: 241 YAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQ 300 Query: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSLPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 EFPSTPQEAFLTSGRRVFSAESTLQAESFCS PMIVYDIEPVTGAKTKAQSLREGNKNEL Sbjct: 301 EFPSTPQEAFLTSGRRVFSAESTLQAESFCSPPMIVYDIEPVTGAKTKAQSLREGNKNEL 360 Query: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL Sbjct: 361 QRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGEQVAHWFGHLDAEL 420 Query: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW Sbjct: 421 FAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGW 480 Query: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM Sbjct: 481 LTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYM 540 Query: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 IAQEMRARMPVRVKQKTDKRRTTHWMAH Sbjct: 541 IAQEMRARMPVRVKQKTDKRRTTHWMAH 568 >gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164303;genbank:gi:56692921;genbank:GeneID :3197204 Length = 543 Score = 232 bits (591), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 140/340 (41%), Positives = 197/340 (57%), Gaps = 39/340 (11%) Query: 1 MTFRKNEPRCDEPSEMTEAEQRLFIMTKLSNPWWRL--NHLYKI------------QNEK 46 M+ EP P++ E + L++P WRL LYKI E+ Sbjct: 3 MSVSYQEPLMPLPTDAAE------LARCLADPEWRLFSGCLYKIMIKGDDKIGPDGSIEE 56 Query: 47 GELVTFRMRP--AQRQLFRSMHNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQ 104 G+ +P AQ++ R + ++N+ILKARQLGF+T I I LD ALF +CGI+AQ Sbjct: 57 GDSFVLPFKPNRAQKRFIRRLWHRNLILKARQLGFTTLIAIMWLDHALFNGDQRCGIIAQ 116 Query: 105 DKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHG-SSIQVATSFRSG 163 D+ AA IFR K+ +D+LP+ +R F + A+ +LF H SS++VATS RSG Sbjct: 117 DRDAAKVIFRDKVKFAYDNLPEEIRERFPT----AAANADELLFAHNNSSVRVATSMRSG 172 Query: 164 TVQRLHISEHGKICAKYPAKAKELRTGTLNAVSDECIIFDESTAEGVGGDFYEMSNRAQE 223 T+ RLH+SE GKICAKYP KA+E+ TG++ AV I+ ESTAEG G+F++M A+ Sbjct: 173 TIHRLHVSEFGKICAKYPDKAQEVVTGSIPAVPTNGILVIESTAEGREGEFFKMVQIAEA 232 Query: 224 IAASGLLLTAQDYKFHFYAWWQDPKYSARVPESGLKLSREKMTYFSAVEKAM------NI 277 AS LT +DY+ HFYAWWQ+PKY R+ ++L+RE+ YF VE + I Sbjct: 233 NHASRKKLTPRDYRMHFYAWWQEPKY--RLDSRTIELTREEHEYFDLVEATVMRDMGERI 290 Query: 278 TLTDEQKQWYINKE----TEQREEMKQEFPSTPQEAFLTS 313 T+ +Q+ WY+ + + E+M QE+PS P EAF S Sbjct: 291 TIDPDQRAWYVATKRADFSGAEEKMWQEYPSFPAEAFQIS 330 >gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bcep22gp49 # Family: family:all:147 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944278;genbank:gi:38640355;genbank:GeneID :2658275 Length = 530 Score = 227 bits (579), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/312 (42%), Positives = 192/312 (61%), Gaps = 20/312 (6%) Query: 29 LSNPWWRL--NHLYKI-------QNEKGELVTFRMRPAQRQLFRSMHNKNIILKARQLGF 79 LS+P WR+ LYKI +++G ++ FR AQR+L R + ++N+ILKARQLGF Sbjct: 23 LSDPMWRICSGRLYKIIIKGDDQDDDEGLVLPFRPNRAQRRLLRRLWHRNLILKARQLGF 82 Query: 80 STAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRS 139 +T I I LD ALF + +CGI+AQD++ A +FR K+ +D+LP+ LR + + + Sbjct: 83 TTLICIIWLDHALFNANSRCGIIAQDRETAEALFRDKVKFAYDNLPEALREAMPL----A 138 Query: 140 GASGGYILFGHG-SSIQVATSFRSGTVQRLHISEHGKICAKYPAKAKELRTGTLNAVSDE 198 + +LF H SSI+VATS R GT+ RLHISE GKICAKYP KA E+ TG++ AV Sbjct: 139 NCTKAELLFAHNNSSIRVATSVRGGTIHRLHISEFGKICAKYPDKAAEVVTGSIPAVPKS 198 Query: 199 CIIFDESTAEGVGGDFYEMSNRAQEIAASGLLLTAQDYKFHFYAWWQDPKYSARVPESGL 258 I+ ESTAEG G+FY ++ +A+ IA +G LTA+DY+FHF+ WWQ P+Y R+ + + Sbjct: 199 GILVIESTAEGREGEFYNITMQAEAIAQAGKPLTARDYRFHFFPWWQAPEY--RMDSAHV 256 Query: 259 KLSREKMTYFSAVEKAMNITLTDEQKQWYINKE----TEQREEMKQEFPSTPQEAFLTSG 314 ++ + YF +E IT+ EQ+ WY+ + E M QE+PSTP E F S Sbjct: 257 IITEKDRQYFETIEAKHGITIDAEQRAWYVATRDADFSGNEERMWQEYPSTPDEPFKVST 316 Query: 315 RRVFSAESTLQA 326 + A+ A Sbjct: 317 EGTYYAQQLAAA 328 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 62.0 bits (149), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 121/562 (21%), Positives = 209/562 (37%), Gaps = 101/562 (17%) Query: 6 NEPRCDEPSEMTEAEQRLFIMTKLSNPWWRLNHLYKIQNEKGELVTFRMRPAQRQLFRSM 65 N + + P E ++ R F+ K ++ N++ + ++G LV F M Q +L Sbjct: 10 NLKKANTPIEFSKDNIREFLKCKEDPVYFTRNYIKIVSLDEG-LVPFNMYDFQEKLITRF 68 Query: 66 HNK--NIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDH 123 H NI RQ G ST YLL A+F ++ ++A A ++ ++ + +++ Sbjct: 69 HENRFNICKMPRQTGKSTTCISYLLHYAVFNDNVNVAVLANKASTARDLL-GRLQLAYEN 127 Query: 124 LPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQRLHISEHGKICAKYPAK 183 LP W++ G I + GS L + KI A Sbjct: 128 LPRWMQQ-------------GIISWNKGS---------------LELENGSKISAN-STS 158 Query: 184 AKELRTGTLNAVS-DECIIFDESTAEGVGGDFYEMSNRAQEIAASGLLLTAQDYKFHFYA 242 + +R G+ N + DE A+ Y Q ++++ HFY Sbjct: 159 SSAVRGGSYNVIFLDEFAFIPNHIADDFFASVYPTITSGQSTKV--IIVSTPRGMNHFYR 216 Query: 243 WWQDPKYSARVPESGLKLSREKMTYFSAVEKAMNITLTDEQKQWYINKETEQREEMKQEF 302 W D + + K Y + + DE +W KE +Q+F Sbjct: 217 MWHDSE-------------KGKSEYVATDVHWSEVPGRDE--EW---KEQTIANTSEQQF 258 Query: 303 PSTPQEAFLTSGRRVFSAESTLQAESFCSLPMIVYDIEPVTGAKTKAQSLREGNKNELQR 362 + FL S + + L +VY+ KT+ L Sbjct: 259 KIEFECEFLGSVNTLINP---------AKLRNLVYE-----APKTRNAGLD--------- 295 Query: 363 TLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGH-LDAE 419 ++E P + Y+ D A GL + D S+ V + + VA + + + Sbjct: 296 -------IYETPVKEHNYIITVDVARGLGN-DYSAFIVFDTTEFPYKVVAKYRNNEIKPM 347 Query: 420 LFAHLISQVCRMYNNAFVGPERNNHGHAV--ILKLRELYPTRYIYN-----EQHLDQAYD 472 LF ++I V + YNNA++ E N+ G V IL+ Y + + Q + Q + Sbjct: 348 LFPNIILDVAKGYNNAYLLIEVNDIGDQVASILQYDLEYENVLMASMRGRAGQIVGQGFS 407 Query: 473 DDTPRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCF 532 +LG T K + +KT++ + +SE+ T+ S A+EGC Sbjct: 408 GKKTQLGVRMTSAVKKLGCSNLKTMMEDDKLLTCDYEIISELTTFA-QRHNSFEAEEGCN 466 Query: 533 DDQLM-----SYMIAQEMRARM 549 DD M S+++AQ+ M Sbjct: 467 DDLAMCLVIFSWLVAQDYFKEM 488 >gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891724;genbank:gi:33620526;genbank:GeneID :1725332 Length = 607 Score = 51.6 bits (122), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 115/512 (22%), Positives = 192/512 (37%), Gaps = 118/512 (23%) Query: 50 VTFRMRPAQRQLFRSMHNKNIILK--ARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 + ++R Q+ + + MH + +RQLG +TA+ I+L F GI+A Sbjct: 133 IKVQLRDYQKDMLKIMHENRMSAHKLSRQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192 Query: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQ 166 A E+ RTK A+ LPD+L+ ++S I+ +GSSI Sbjct: 193 MAVEVLERTKQAIEL--LPDFLQPGIVEWNKKS------IVLENGSSI------------ 232 Query: 167 RLHISEHGKICAKYPAKAKELRTGTLNAVS-DECIIFDESTAEGVGGDFYEMSNRAQEIA 225 Y + +R + + + DEC T + Q + Sbjct: 233 -----------GAYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLA---------IQPVI 272 Query: 226 ASG-----LLLTAQDYKFHFYAWWQ---DPKYSARVPESGLKLSREKMTYFSAVEKAMNI 277 +SG ++ T + HFY WQ D K S VP + S ++ Y A Sbjct: 273 SSGRESKMIMTTTPNGLNHFYDIWQSAIDGK-SGYVPYEAVWHSVKERLYNKA------- 324 Query: 278 TLTDEQKQWYINKETEQREEMKQEFPSTPQEAFLTSGRRVFSAESTLQAESFCSLPMIVY 337 + D+ +W + + ++Q E F +SG + + +TL SF +V Sbjct: 325 DIFDDGYEW--SSQAIAGSSLEQFLQEHNAEFFGSSGTLIRA--TTLSRLSFID---VVN 377 Query: 338 DIEPVTGAKTKAQSLREGNKNELQRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSS 397 D N +E P +YV D +EG D + Sbjct: 378 D---------------------------NGFYQFEKPKEGRKYVATLDCSEG-RGQDYHA 409 Query: 398 LDVVKRSNG--EQVAHWFGHLDAE-LFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRE 454 L ++ + +QVA + + + + ++ + MYN V E N+ G ++ L Sbjct: 410 LQIIDITEFPYKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLA- 468 Query: 455 LYPTRYIYNEQHLDQAYD----DDTPRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGT 510 +D YD D LG +++SK + +K L+ I GT Sbjct: 469 ------------MDLEYDNIICDSFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGT 516 Query: 511 LSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 + E+ T + KG S A+EG DD +MS +I Sbjct: 517 IQELRT--FSEKGVSWAAEEGFHDDLVMSLVI 546 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 50.4 bits (119), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 96/200 (48%), Gaps = 23/200 (11%) Query: 30 SNPWWRLNHLYKIQNEKGELVTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYL 87 ++P + + KIQ+ ++ F + P Q +L H ++ K RQ+G + Y Sbjct: 16 NDPIYFIRKYVKIQHPIKRVIPFDLYPIQEKLINFYHTHRYVITEKPRQMGVTWCAVAYA 75 Query: 88 LDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGGYIL 147 L Q +F + K ++A +K+A ++ +I ++ LP +L+ +++R+ + YI Sbjct: 76 LHQMIFNSNYKV-LIAANKEATAKNVLERIKFAYEQLPRFLQ-----IKKRTW-NKTYIE 128 Query: 148 FGHGSSIQVAT----SFRSGTVQRLHISEHGKICAKYPAKAKELRTGTLN--AVSDECII 201 F + SS + + S RS ++ L + E A + + +EL A +CI+ Sbjct: 129 FSNYSSARAVSSKSDSGRSESITLLIVEE-----AAFISNMEELWASVQQTLATGGKCIV 183 Query: 202 FDESTAEGVGGDFYEMSNRA 221 ST GV G++YE + RA Sbjct: 184 --NSTYNGV-GNWYERTIRA 200 >gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469498;genbank:gi:157311455;genbank:Ge neID:5602125 Length = 607 Score = 48.9 bits (115), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 114/512 (22%), Positives = 191/512 (37%), Gaps = 118/512 (23%) Query: 50 VTFRMRPAQRQLFRSMHNKNIILK--ARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 + ++R Q+ + + MH + +RQLG +TA+ I+L F GI+A Sbjct: 133 IKVQLRDYQKDMLKIMHENRMSAHKLSRQLGKTTAVAIFLAHYVCFNKDKAVGILAHKGS 192 Query: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATSFRSGTVQ 166 A E+ RTK A+ LPD+L+ ++S I+ +GSSI Sbjct: 193 MAVEVLERTKQAIEL--LPDFLQPGIVEWNKKS------IVLENGSSI------------ 232 Query: 167 RLHISEHGKICAKYPAKAKELRTGTLNAVS-DECIIFDESTAEGVGGDFYEMSNRAQEIA 225 Y + +R + + + DEC T + Q + Sbjct: 233 -----------GAYASSPDAVRGNSFSFIYIDECAFIQNWTDCFLA---------IQPVI 272 Query: 226 ASG-----LLLTAQDYKFHFYAWWQ---DPKYSARVPESGLKLSREKMTYFSAVEKAMNI 277 +SG ++ T + HFY WQ D K S VP + S ++ Y A Sbjct: 273 SSGRESKMIMTTTPNGLNHFYDIWQSAIDGK-SGYVPYEAVWHSVKERLYNKA------- 324 Query: 278 TLTDEQKQWYINKETEQREEMKQEFPSTPQEAFLTSGRRVFSAESTLQAESFCSLPMIVY 337 + D+ +W + + ++Q E F +SG + + +TL SF +V Sbjct: 325 DIFDDGYEW--SSQAIAGSSLEQFLQEHNAEFFGSSGTLIRA--TTLSRLSFID---VVN 377 Query: 338 DIEPVTGAKTKAQSLREGNKNELQRTLMNYLLVWELPDPDEEYVCGADTAEGLEHGDRSS 397 D N +E P +YV D +EG D + Sbjct: 378 D---------------------------NGFYQFEKPKEGRKYVATLDCSEG-RGQDYHA 409 Query: 398 LDVVKRSNG--EQVAHWFGHLDAE-LFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRE 454 L ++ + + VA + + + + ++ + MYN V E N+ G ++ L Sbjct: 410 LQIIDITEFPYKPVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLA- 468 Query: 455 LYPTRYIYNEQHLDQAYD----DDTPRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGT 510 +D YD D LG +++SK + +K L+ I GT Sbjct: 469 ------------MDLEYDNIICDSFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGT 516 Query: 511 LSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 + E+ T + KG S A+EG DD +MS +I Sbjct: 517 IQELRT--FSEKGVSWAAEEGFHDDLVMSLVI 546 >gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: terminase large subunit gp17 # Family: family:all:147 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195134;genbank:gi:58532911;uniprot:Q5GQN8 ;genbank:GeneID:3260486 Length = 548 Score = 47.8 bits (112), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 9/137 (6%) Query: 30 SNPWWRLNHLYKIQNEKGELVTFRMRPAQRQLFRSMHNK--NIILKARQLGFSTAIDIYL 87 ++P + + KI + LV F+M Q +L H NI RQ G ST + YL Sbjct: 35 NDPVYFTKNYVKIVSLDEGLVPFKMWDFQEELIMKFHKNRFNIAKLPRQTGKSTTVVSYL 94 Query: 88 LDQALFIPHLKCGIVAQDKQAASEIFRTKIAVPFDHLPDWLRASFTIVERRSGASGGYIL 147 L +F ++ GI+A A ++ ++A +++LP W++ + + G I Sbjct: 95 LHYLIFNDNVNIGILANKASTARDLL-ARLATAYENLPKWIQQGVVVWNK------GNIE 147 Query: 148 FGHGSSIQVATSFRSGT 164 +GS I A++ S Sbjct: 148 LENGSKILAASTSASAV 164 Score = 43.9 bits (102), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 12/184 (6%) Query: 368 LLVWELPDPDEEYVCGADTAEGLEHGDRSSL---DVVKRSNGEQVAHWFGHLDAELFAHL 424 L ++E P EY+ D + G+ GD S+ D+ + + LF ++ Sbjct: 296 LDIYEEPKEKSEYLMTVDVSRGI-GGDYSAFIIFDITTVPYKVVGKYRNNEIKPMLFPNI 354 Query: 425 ISQVCRMYNNAFVGPERNNHGHAV--ILKLRELYPTRYIY-----NEQHLDQAYDDDTPR 477 I+ + R YNNA+V E N+ G V IL YP + Q + Q + + Sbjct: 355 INDLARSYNNAWVLCEVNDIGDQVASILNYDLEYPNVLMCAMRGRAGQLVGQGFSGSKTQ 414 Query: 478 LGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLM 537 LG + K V +KT++ ++E+ T++ K S A EG DD +M Sbjct: 415 LGVKMSITVKKVGCANLKTIVEEDKLIFNDYDIINELTTFI-QKKQSFEADEGFHDDLVM 473 Query: 538 SYMI 541 +I Sbjct: 474 CMVI 477 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 47.4 bits (111), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 12/186 (6%) Query: 366 NYLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSN--GEQVAHWFGH-LDAELFA 422 N L ++E YV AD + G+ GD S+ V+ + + VA + + + LF Sbjct: 294 NGLSMYEKTIQGHTYVITADVSRGVS-GDYSAFLVIDTTTIPYKLVAKYRNNDIKPILFP 352 Query: 423 HLISQVCRMYNNAFVGPERNNHGHAV--ILKLRELYPTRYIY-----NEQHLDQAYDDDT 475 ++I V R YN+AFV E N+ G V I++ Y + Q L Q + Sbjct: 353 NIIVDVARNYNHAFVLVEVNDVGGQVADIIQYDLEYDNLLMCAMRGRAGQQLGQGFSGKK 412 Query: 476 PRLGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQ 535 ++G + +K V +K LL + + +SE+ T++ + + A+EGC DD Sbjct: 413 TQMGIKMSSATKQVGCSNLKALLEDDKFLLNDYDCISELTTFIQKGQ-TFQAEEGCNDDL 471 Query: 536 LMSYMI 541 M +I Sbjct: 472 AMCMVI 477 >gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944105;genbank:gi:38640149;genbank:GeneID :2658038 Length = 633 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 16/174 (9%) Query: 372 ELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGH-LDAELFAHLISQV 428 E P +Y+ D AEG D S++ ++ ++ QVA + + + L +I + Sbjct: 411 EKPVEGNKYIATVDPAEG-RGQDYSTIQIIDVTSYPYRQVAVYHSNKISPLLLPSVIMRY 469 Query: 429 CRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQSKP 488 YNNA+V E N+ G+ V + ++ + + D + LG T+ +K Sbjct: 470 AMEYNNAWVYIELNSIGNMV---------AKSLFIDLEYENVIVDSSKDLGMKQTKVTKA 520 Query: 489 VLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 V +K L+ + GT+ E T+V KG S AQ+G DD +MS I Sbjct: 521 VGCSTLKDLIEKDKLIVSHKGTIQEFRTFV--EKGVSWAAQDGFHDDLVMSLCI 572 Score = 35.0 bits (79), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 49 LVTFRMRPAQRQLFRSMHNKNIILK--ARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 ++ ++R Q+ + R M ++ + + RQLG +TA I+L +F G++A Sbjct: 158 VIKVQLRDYQKDMLRIMASERMSMHNLPRQLGKTTATAIFLTHFVVFNEAKAVGVLAHKG 217 Query: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSG 140 + E+ RTK ++ LPD+L+ IVE G Sbjct: 218 DMSKEVLERTKQSIEL--LPDFLQPG--IVEWNKG 248 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 14/178 (7%) Query: 367 YLLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNGE--QVAHWFGH-LDAELFAH 423 Y + PDP +Y+ D +EG D +L ++ + E QVA + + + Sbjct: 383 YFYRFHEPDPTHKYIASLDCSEG-RGQDYHALHIIDVTTDEWEQVAVLHSNEISHMILPD 441 Query: 424 LISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTT 483 ++ + YN A V E N+ G +V + +Y + + D LG T Sbjct: 442 IVYKYLMEYNEAPVYIELNSTGVSV---------AKSLYMDLEYENVICDSMQDLGMKQT 492 Query: 484 RQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMSYMI 541 R++KPV +K L+ + T+ E T+ + K S A++G DD +MS +I Sbjct: 493 RRTKPVGCSTLKDLIEKDKLKLNHKQTIMEFRTFSQN-KLSWAAEDGFHDDLVMSLVI 549 Score = 40.4 bits (93), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 19/139 (13%) Query: 50 VTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 + ++R QR + + M + +RQLG +T + I+L F GI+A Sbjct: 135 IKVQLRDYQRDMLKIMSKNRMTTCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGS 194 Query: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FRS 162 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 195 MSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IELDNGSSIGAYASSPDAVRG 246 Query: 163 GTVQRLHISEHGKICAKYP 181 + ++I E CA P Sbjct: 247 NSFAMIYIDE----CAFIP 261 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 43.9 bits (102), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 19/139 (13%) Query: 50 VTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 + ++R QR + + M +K + + +RQLG +T + I+L F GI+A Sbjct: 135 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGS 194 Query: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FRS 162 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 195 MSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IQLDNGSSIGAYASSPDAVRG 246 Query: 163 GTVQRLHISEHGKICAKYP 181 + ++I E CA P Sbjct: 247 NSFAMIYIDE----CAFIP 261 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 43.5 bits (101), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 19/140 (13%) Query: 49 LVTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 ++ ++R QR + + M +K + + +RQLG +T + I+L F GI+A Sbjct: 134 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 Query: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FR 161 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 194 SMSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IELDNGSSIGAYASSPDAVR 245 Query: 162 SGTVQRLHISEHGKICAKYP 181 + ++I E CA P Sbjct: 246 GNSFAMIYIDE----CAFIP 261 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 24/176 (13%) Query: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGHLDAELFAHLISQVCRM 431 P+PD +Y+ D +EG D +L ++ ++ EQV G L + +HLI M Sbjct: 390 PEPDRKYIATLDCSEG-RGQDYHALHIIDVTDDVWEQV----GVLHSNTISHLILPDIVM 444 Query: 432 -----YNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQS 486 YN V E N+ G +V + +Y + + D LG T+++ Sbjct: 445 RYLVEYNECPVYIELNSTGVSV---------AKSLYMDLEYEGVICDSYTDLGMKQTKRT 495 Query: 487 KPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 K V +K L+ I T+ E T + KG S A+EG DD +MS +I Sbjct: 496 KAVGCSTLKDLIEKDKLIIHHRATIQEFRT--FSEKGVSWAAEEGYHDDLVMSLVI 549 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 43.5 bits (101), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 19/140 (13%) Query: 49 LVTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 ++ ++R QR + + M +K + + +RQLG +T + I+L F GI+A Sbjct: 134 VIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKG 193 Query: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FR 161 ++E+ RTK A+ LPD+L+ IVE G+ I +GSSI S R Sbjct: 194 SMSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS----IELDNGSSIGAYASSPDAVR 245 Query: 162 SGTVQRLHISEHGKICAKYP 181 + ++I E CA P Sbjct: 246 GNSFAMIYIDE----CAFIP 261 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 24/176 (13%) Query: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGHLDAELFAHLISQVCRM 431 P+PD +Y+ D +EG D +L ++ ++ EQV G L + +HLI M Sbjct: 390 PEPDRKYIATLDCSEG-RGQDYHALHIIDVTDDVWEQV----GVLHSNTISHLILPDIVM 444 Query: 432 -----YNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQS 486 YN V E N+ G +V + +Y + + D LG T+++ Sbjct: 445 RYLVEYNECPVYIELNSTGVSV---------AKSLYMDLEYEGVICDSYTDLGMKQTKRT 495 Query: 487 KPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMSYMI 541 K V +K L+ I T+ E T + KG S A+EG DD +MS +I Sbjct: 496 KAVGCSTLKDLIEKDKLIIHHRATIQEFRT--FSEKGVSWAAEEGYHDDLVMSLVI 549 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 12/207 (5%) Query: 368 LLVWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSNG--EQVAHWFGH-LDAELFAHL 424 L V+E + Y+ D + G+ + D S+ V+ + + VA + + + +F +L Sbjct: 297 LAVYEHVQENHNYIITVDVSRGVGN-DYSAFCVIDTTTVPYKVVARYKNNQIKPLVFPNL 355 Query: 425 ISQVCRMYNNAFVGPERNNHGHAV--ILKLRELYPTRYIYN-----EQHLDQAYDDDTPR 477 I V YN A+V E N+ G V I++ Y + + Q L Q + + Sbjct: 356 IVDVATNYNGAYVLCEVNDIGGQVADIIQYDLEYENLLMVSMRGRAGQQLGQGFSGKKTQ 415 Query: 478 LGWLTTRQSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLM 537 LG + K V +K L+ + + T++E+ T++ + S A++GC DD M Sbjct: 416 LGIKMSTAVKQVGCSNLKALIEDDKLIVEDYDTIAELTTFIQKGQ-SFQAEDGCNDDLAM 474 Query: 538 SYMIAQEMRARMPVRVKQKTDKRRTTH 564 +I M + + D R+ + Sbjct: 475 CLVIFSWMAMQPYFKEMHDNDVRQRIY 501 >gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp17 terminase subunit, nuclease and ATPase # Family: family:all:147 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID :3416364 Length = 609 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 16/169 (9%) Query: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSN--GEQVAHWFGHLDAEL-FAHLISQVCR 430 P+ +YV D AEG D ++ ++ + EQVA + + + L ++ + Sbjct: 390 PEEGHKYVAVLDPAEG-RGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLT 448 Query: 431 MYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQSKPVL 490 MYN A++ E N+ GH+V + +++E + D LG T++SK + Sbjct: 449 MYNEAWIYIELNSTGHSV---------AKSLFSELEYENVICDSYNDLGMKQTKRSKAIG 499 Query: 491 TEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMS 538 +K L+ I T+ E T + KG S A+EG DD +MS Sbjct: 500 CSTLKDLIEKDKLIINNKKTILEFRT--FSEKGVSWAAEEGFHDDLVMS 546 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 50 VTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 + ++R Q+++ MH ++ +RQLG +T + I+L F G++A Sbjct: 133 IKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKAS 192 Query: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGA 141 ++E+ RTK A+ LPD+L+ IVE G+ Sbjct: 193 MSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS 223 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 41.2 bits (95), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%) Query: 49 LVTFRMRPAQRQLFRSMHNKNIILK--ARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 ++ ++R Q+ + R M ++ +RQLG +T + I+L F GI+A Sbjct: 125 IIRVQLRDYQKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKA 184 Query: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS 159 ++E+ RTK A+ LPD+L+ IVE G+ I G+G +I +S Sbjct: 185 SMSAEVLHRTKQALEL--LPDFLQPG--IVEWNKGS----ITLGNGCAIGAFSS 230 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 41.2 bits (95), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%) Query: 49 LVTFRMRPAQRQLFRSMHNKNIILK--ARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 ++ ++R Q+ + R M ++ +RQLG +T + I+L F GI+A Sbjct: 125 IIRVQLRDYQKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKA 184 Query: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS 159 ++E+ RTK A+ LPD+L+ IVE G+ I G+G +I +S Sbjct: 185 SMSAEVLHRTKQALEL--LPDFLQPG--IVEWNKGS----ITLGNGCAIGAFSS 230 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 41.2 bits (95), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 15/131 (11%) Query: 49 LVTFRMRPAQRQLFRSMHNKNIILK--ARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDK 106 ++ ++R Q+ + R M ++ +RQLG +T + I+L F GI+A Sbjct: 124 IIRVQLRDYQKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKA 183 Query: 107 QAASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGASGGYILFGHGSSIQVATS----FR 161 ++E+ RTK A+ LPD+L+ IVE G+ I G+G +I +S R Sbjct: 184 SMSAEVLHRTKQALEL--LPDFLQPG--IVEWNKGS----ITLGNGCAIGAFSSSPDAVR 235 Query: 162 SGTVQRLHISE 172 + ++I E Sbjct: 236 GNSFALIYIDE 246 >gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899601;genbank:gi:34419588;genbank:GeneID :2546011 Length = 600 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 13/174 (7%) Query: 370 VWELPDPDEEYVCGADTAEGLEHGDRSSLDVVKRSN--GEQVAHWFGHLDAELF--AHLI 425 V++ P+ +Y+ DT+EG D +L ++ ++ EQVA + + + L A ++ Sbjct: 371 VYKKPEEGHKYILTVDTSEGRGQ-DYHALHMIDVTSYPFEQVAVFHDNKTSHLLLPAIIM 429 Query: 426 SQVCRMYNNAFVGPERNNHGHAVILKL-RELYPTRYIYNEQHLDQAYDDDTPRLGWLTTR 484 Q R YN A+V E + G V+ +L R+L Y +++ LG + Sbjct: 430 KQAYR-YNEAYVYCEIASTGELVMNELFRDLE-----YENVIMEERASGGRRGLGLKPNK 483 Query: 485 QSKPVLTEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKGSMNAQEGCFDDQLMS 538 ++K + +K L+ I TL E +T+V K S A+EG DD +MS Sbjct: 484 KTKAIGCSTLKDLIEKDQLKINHIPTLKEFHTFVEKGK-SWEAEEGFHDDLVMS 536 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 55 RPAQRQLFRSMHNK--NIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEI 112 RP Q+++ +I L RQLG +T + I+L +F + GI+A + E+ Sbjct: 126 RPYQKEMLEVADRSRFSIFLLPRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEV 185 Query: 113 FRTKIAVPFDHLPDWLR 129 ++ ++LPD+L+ Sbjct: 186 LE-RVKNVIENLPDFLQ 201 >gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165255;genbank:gi:145708080;genbank:Ge neID:5247139 Length = 593 Score = 28.9 bits (63), Expect = 0.16, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 24/47 (51%) Query: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 H F +D E A I +V Y+ A+VG +R G AV +++ P Sbjct: 450 HQFRGIDYEEQAGAIRRVAERYDVAYVGIDRTGIGDAVFRLVQKFRP 496 >gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hypothetical protein # Family: family:all:169 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654730;genbank:gi:109302915;genbank:GeneI D:4156059 Length = 603 Score = 28.5 bits (62), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Query: 66 HNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKI 117 H+ ILK+RQ+G + L+ A+F + + A +QA EIF+T I Sbjct: 175 HSVRNILKSRQIGATYYFAFEALEDAIFTGDNQIFLSASKRQA--EIFKTYI 224 >gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: putative phage terminase large subunit # Family: family:all:140 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039815;genbank:gi:126010850;genbank:Ge neID:5076210 Length = 689 Score = 27.7 bits (60), Expect = 0.34, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 260 LSREKMTYFSAVEKAMN------ITLTDEQKQWYINKETEQREEMKQEFPSTPQEAFLTS 313 L E M Y A +N +TL D +KQ + +Q E +Q P P+E Sbjct: 618 LDCEAMNYMLACMLRLNRRKGDAMTLKDIKKQGEPAADEQQEEAAEQSQPDAPKEQAPAG 677 Query: 314 GRR 316 GRR Sbjct: 678 GRR 680 >gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf15 # Family: family:all:169 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043485;genbank:gi:9628620;genbank:GeneID: 1261142 Length = 607 Score = 26.9 bits (58), Expect = 0.63, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 66 HNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIA 118 H+ ILK+RQ+G + L+ A+F + + A +QA EIF+ I Sbjct: 176 HDVRNILKSRQIGATYYFSFEALEDAIFSGDNQIFLSASKRQA--EIFKNYIV 226 >gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536821;genbank:gi:17981830;genbank:GeneID :929209 Length = 607 Score = 26.9 bits (58), Expect = 0.65, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 66 HNKNIILKARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQAASEIFRTKIA 118 H+ ILK+RQ+G + L+ A+F + + A +QA EIF+ I Sbjct: 176 HDVRNILKSRQIGATYYFSFEALEDAIFSGDNQIFLSASKRQA--EIFKNYIV 226 >gi|22578|lcl|protein:vir:95547 Length: 605 # NCBI annotation: ORF010 # Family: family:all:1430 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240892;genbank:gi:66394959;genbank:GeneI D:5132488 Length = 605 Score = 26.2 bits (56), Expect = 0.99, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 11/54 (20%) Query: 38 HLYKIQNEKGELVTFRM-----------RPAQRQLFRSMHNKNIILKARQLGFS 80 ++ K +G +TF + RP Q ++ H ++K+RQLG S Sbjct: 36 YMLKYHTLRGHPITFSIPNRDRSKAQAHRPWQTRIVNDTHPNKAVIKSRQLGLS 89 >gi|9399|lcl|protein:vir:99333 Length: 605 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024465;genbank:gi:48696425;genbank:GeneI D:2948061 Length = 605 Score = 26.2 bits (56), Expect = 0.99, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 11/54 (20%) Query: 38 HLYKIQNEKGELVTFRM-----------RPAQRQLFRSMHNKNIILKARQLGFS 80 ++ K +G +TF + RP Q ++ H ++K+RQLG S Sbjct: 36 YMLKYHTLRGHPITFSIPNRDRSKAQAHRPWQTRIVNDTHPNKAVIKSRQLGLS 89 >gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: terminase # Family: family:all:147 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203458;genbank:gi:15320614;genbank:GeneID :921717 Length = 482 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%) Query: 396 SSLDVVK--RSNGEQVAHWFGHLDA 418 +D+V R+NGE ++H+FG LD Sbjct: 293 GGVDIVDHYRNNGEPLSHYFGLLDG 317 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 12/110 (10%) Query: 359 ELQRTLMNYLLVWELPDPDEEYVCGADTA----EGLEHGDRSSLDVVKR---SNGE---- 407 ELQR +++ + WE P ++ G+ + GD + V+ S G+ Sbjct: 383 ELQRCMVDVMETWEDFAPFADHPFGSRPVWIGYDPSHTGDSAGCVVLAPPVVSGGKFRML 442 Query: 408 QVAHWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 + W G +D A I ++ YN ++G + G V +R YP Sbjct: 443 ERHQWKG-MDFAAQAEGIRRLTEKYNVEYIGIDATGLGLGVFQLVRSFYP 491 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 196 SDECIIFDESTAEGVGGDFYEMSNR 220 S + IIFDE+ VGGD + + R Sbjct: 147 SYDFIIFDEAAISDVGGDAFRVQLR 171 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYN 463 H F D E A I + + YN ++ + G V +R+ +P N Sbjct: 457 HQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALN 509 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 24.3 bits (51), Expect = 3.9, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYN 463 H F D E A I + + YN ++ + G V +R+ +P N Sbjct: 457 HQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALN 509 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYN 463 H F D E A I + + YN ++ + G V +R+ +P N Sbjct: 445 HQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALN 497 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 23.5 bits (49), Expect = 6.3, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 20/47 (42%) Query: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 H + +D A I ++ YN ++G + G V +R YP Sbjct: 445 HQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYP 491 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 23.5 bits (49), Expect = 6.3, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 20/47 (42%) Query: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 H + +D A I ++ YN ++G + G V +R YP Sbjct: 445 HQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYP 491 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 23.5 bits (49), Expect = 6.3, Method: Compositional matrix adjust. Identities = 12/47 (25%), Positives = 20/47 (42%) Query: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYP 457 H + +D A I ++ YN ++G + G V +R YP Sbjct: 445 HQWKGMDFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYP 491 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust. Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 506 RWSGTLSEMNTYVYD 520 R G + E NTYVYD Sbjct: 374 RVKGLMEEFNTYVYD 388 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 23.1 bits (48), Expect = 8.3, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 16/25 (64%) Query: 307 QEAFLTSGRRVFSAESTLQAESFCS 331 ++A LT G ++F + + QAE F S Sbjct: 195 EDAILTGGNQIFLSATRAQAEVFRS 219 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.132 0.399 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,316 Number of Sequences: 514 Number of extensions: 10504 Number of successful extensions: 81 Number of sequences better than 100.0: 43 Number of HSP's better than 100.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 54 length of query: 568 length of database: 206,069 effective HSP length: 76 effective length of query: 492 effective length of database: 167,005 effective search space: 82166460 effective search space used: 82166460 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)