Query lcl|Aclame:protein:vir:78914|NCBI_annot:gp9|genbank:acc:YP_001468849;genbank:gi:157325484;genbank:GeneID:5601911 Match_columns 121 No_of_seqs 1 out of 4 Neff 1.0 Searched_HMMs 1612 Date Tue Dec 3 03:09:09 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_54 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_54_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:78914 Length: 121 100.0 2E-93 1.2E-96 528.8 10.1 121 1-121 1-121 (121) 2 protein:vir:44 Length: 120 # N 95.4 5.1E-05 3.2E-08 44.1 4.2 108 1-114 7-120 (120) 3 protein:vir:80934 Length: 120 94.8 0.00011 6.9E-08 42.3 4.2 108 1-114 7-120 (120) 4 protein:vir:98924 Length: 113 83.1 0.01 6.2E-06 31.5 4.3 106 3-114 1-113 (113) 5 protein:vir:1582 Length: 117 # 30.1 0.87 0.00054 20.9 4.0 106 4-114 1-117 (117) 6 protein:vir:79686 Length: 118 27.6 0.95 0.00059 20.7 3.8 104 4-114 1-118 (118) 7 protein:vir:78048 Length: 117 12.1 3.3 0.002 17.7 3.0 93 21-121 1-116 (117) 8 protein:vir:102144 Length: 113 6.1 11 0.0069 14.8 4.3 97 8-117 1-113 (113) 9 protein:vir:488 Length: 187 # 5.1 8.8 0.0055 15.4 2.1 79 1-116 101-187 (187) 10 protein:vir:4461 Length: 186 # 3.8 13 0.008 14.5 2.0 81 1-115 101-186 (186) No 1 >protein:vir:78914 Length: 121 # NCBI annotation: gp9 # Family: family:all:10241 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468849;genbank:gi:157325484;genbank:GeneID:5601911 Probab=100.00 E-value=2e-93 Score=528.79 Aligned_cols=121 Identities=100% Similarity=1.511 Sum_probs=121.0 Q ss_pred CcccCCCcchhhccceeEEecCCCcchhhhccccccchhhHHhHHHHHhhhhhccceeeehhhhhhccceeeeecCCcee Q lcl|Aclame:pro 1 MSFQLPPIPEAILNTEVTITSNSGRDDFGNLLPDAINKSMFRYEFEKLVNKTEEGLNIRYIVNLFCNKLNFVVSEGDNVS 80 (121) Q Consensus 1 msfqlppipeailntevtitsnsgrddfgnllpdainksmfryefeklvnkteeglniryivnlfcnklnfvvsegdnvs 80 (121) |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| T Consensus 1 msfqlppipeailntevtitsnsgrddfgnllpdainksmfryefeklvnkteeglniryivnlfcnklnfvvsegdnvs 80 (121) T protein:vir:78 1 MSFQLPPIPEAILNTEVTITSNSGRDDFGNLLPDAINKSMFRYEFEKLVNKTEEGLNIRYIVNLFCNKLNFVVSEGDNVS 80 (121) T ss_pred CcccCCCcchhhccceeEEecCCCcchhhhccccccchhhHHHHHHHHhhhhhhcccceehhhhhhccceeeeecCCcee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EecCceeeeecceeeeecCCCCCCceeeeeeeeeeccccCC Q lcl|Aclame:pro 81 FVIPDYCLIKGEVQSVSFPPNPDGSIHHFEIVVGEVTEHEL 121 (121) Q Consensus 81 fvipdyclikgevqsvsfppnpdgsihhfeivvgevtehel 121 (121) ||||||||||||||||||||||||||||||||||||||||| T Consensus 81 fvipdyclikgevqsvsfppnpdgsihhfeivvgevtehel 121 (121) T protein:vir:78 81 FVIPDYCLIKGEVQSVSFPPNPDGSIHHFEIVVGEVTEHEL 121 (121) T ss_pred EEcCceeeeecceeeeecCCCCCCceeeeeeeeeeccccCC Confidence 99999999999999999999999999999999999999999 No 2 >protein:vir:44 Length: 120 # NCBI annotation: gp9 # Family: family:all:2747 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463470;swissprot:trembl:q9t1b4;genbank:gi:16798792;uniprot:Q9T1B4;genbank:GeneID:922373 Probab=95.44 E-value=5.1e-05 Score=44.12 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=74.7 Q ss_pred CcccCCCcchhhccceeEEecCCCcchhhhc-cccccchhhHHhHHHHHhhhhhccceeeehhhhhh-----ccceeeee Q lcl|Aclame:pro 1 MSFQLPPIPEAILNTEVTITSNSGRDDFGNL-LPDAINKSMFRYEFEKLVNKTEEGLNIRYIVNLFC-----NKLNFVVS 74 (121) Q Consensus 1 msfqlppipeailntevtitsnsgrddfgnl-lpdainksmfryefeklvnkteeglniryivnlfc-----nklnfvvs 74 (121) |+ .+||||...|+-++|+.-.-|.|++|.. -.+.+-=+--|++...-+.-+-.+-.+.+=-=+|| +-+.-+.. T Consensus 7 ~~-~m~~iPk~~l~~sit~k~~~~~d~~g~~~y~~pv~I~nvRvd~~~~ysg~~n~rq~~~naviFi~a~~S~p~~~~~~ 85 (120) T protein:vir:44 7 IT-NAPPLPLDWLIHNISYEAYKEEDRHNQVVYEKGIEIEHVRVDFSKSNQIAGLSDSDRYDAVIFIDAVNSMNVPSDFV 85 (120) T ss_pred hh-hcCCcChhhccceEEEEEecCCCCCCCCcccCceeccCeEEecceeeecCCCCceeeeeeEEEEecccCCccceecC Confidence 43 6899999999999999999999999986 34444444556666555444444444444333444 33443557 Q ss_pred cCCceeEecCceeeeecceeeeecCCCCCCceeeeeeeee Q lcl|Aclame:pro 75 EGDNVSFVIPDYCLIKGEVQSVSFPPNPDGSIHHFEIVVG 114 (121) Q Consensus 75 egdnvsfvipdyclikgevqsvsfppnpdgsihhfeivvg 114 (121) +|..+-|--.+|+..+= +.. .| .+|.+||+|+.|= T Consensus 86 ~gskI~f~G~eytI~~i--~~~-~~--~sn~vh~yEleVi 120 (120) T protein:vir:44 86 SRSRIFFSGKAYKIVKV--IPC-YA--TSNSVHHWEIEVI 120 (120) T ss_pred cCCEEEeCCceEEEEee--eec-cC--CCCceEEEEEEeC Confidence 89999999999997653 332 33 4589999999776 No 3 >protein:vir:80934 Length: 120 # NCBI annotation: gp9 # Family: family:all:2747 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468395;genbank:gi:157324969;genbank:GeneID:5601367 Probab=94.80 E-value=0.00011 Score=42.27 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=73.8 Q ss_pred CcccCCCcchhhccceeEEecCCCcchhhhc-cccccchhhHHhHHHHHhhhhhccceeeehhhhhh-----ccceeeee Q lcl|Aclame:pro 1 MSFQLPPIPEAILNTEVTITSNSGRDDFGNL-LPDAINKSMFRYEFEKLVNKTEEGLNIRYIVNLFC-----NKLNFVVS 74 (121) Q Consensus 1 msfqlppipeailntevtitsnsgrddfgnl-lpdainksmfryefeklvnkteeglniryivnlfc-----nklnfvvs 74 (121) |+ .+||||...|+-++|+.-.-|.|++|.. -.+.+--+--|++...-+.-+-.+-.+.+=-=+|| +-+.-... T Consensus 7 ~~-~m~~iPk~~l~~sit~k~~~~~d~~g~~~y~~pv~I~nvRvd~~~~ysg~~n~rq~~~naviFi~a~~S~p~~~~~~ 85 (120) T protein:vir:80 7 VT-NAPPLPLDWLIHNISYEAYKEEGRHNQVVYEKGFEIEHVRVDFSKSNQIAGLSDSDRYDAVIFIDAVNSMNVPDDFI 85 (120) T ss_pred hh-hcCCcChhhccceEEEEEecCCCCCCCccccCceeccCeEEecceeeecCCCCceeeeeeEEEEecccCCccceecc Confidence 43 6899999999999999999999999986 34444444456666555444444444444333444 33433557 Q ss_pred cCCceeEecCceeeeecceeeeecCCCCCCceeeeeeeee Q lcl|Aclame:pro 75 EGDNVSFVIPDYCLIKGEVQSVSFPPNPDGSIHHFEIVVG 114 (121) Q Consensus 75 egdnvsfvipdyclikgevqsvsfppnpdgsihhfeivvg 114 (121) +|..+-|--.+|+..+= +.. .| .+|.+||+|+.|= T Consensus 86 ~gskI~f~G~eytI~~i--~~~-~~--~s~~vh~yEleVi 120 (120) T protein:vir:80 86 SRSRIFFSGKAYKIVKV--IPC-YA--TSENVHHWEIEVI 120 (120) T ss_pred cCCEEEeCCceEEEEEe--eec-cC--CCCceeEEEEEeC Confidence 89999999999997653 332 32 4589999999776 No 4 >protein:vir:98924 Length: 113 # NCBI annotation: hypothetical protein # Family: family:all:2747 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164421;genbank:gi:56694911;genbank:GeneID:3197315 Probab=83.07 E-value=0.01 Score=31.54 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=68.1 Q ss_pred ccCCCcchhhccceeEEecCCCcchhhhc-cccccchhhHHhHHHHHhhhhhccceeeehhhhhh-----ccceeeeecC Q lcl|Aclame:pro 3 FQLPPIPEAILNTEVTITSNSGRDDFGNL-LPDAINKSMFRYEFEKLVNKTEEGLNIRYIVNLFC-----NKLNFVVSEG 76 (121) Q Consensus 3 fqlppipeailntevtitsnsgrddfgnl-lpdainksmfryefeklvnkteeglniryivnlfc-----nklnfvvseg 76 (121) .-+||||...|+.++|+.---|.||+|.- -.+.+--+--|++-.....-|..+..+-|=-=+|| +-+ +.++++ T Consensus 1 ~~m~~ipk~~l~~sit~k~~~~~dd~g~~~y~~pv~I~nvrv~~~~~ysgt~n~rq~~~naviF~ya~~S~p~-~~~~~~ 79 (113) T protein:vir:98 1 MVMPKPPIDFLVDSFMYKEYMGENSWSEPEYARPVLISNCRIDRGAEYTSTTSGRQLLYNAVVFCYEGMTTPL-PQFKAQ 79 (113) T ss_pred CccCcCChhhccceEEEEEecccCCCCCcccCCcEeecceEecccceeeccCCCceeeeeeEEEEecccCccc-eEecCC Confidence 56899999999999999999999999986 33333334445555455555555544433222333 333 466777 Q ss_pred CceeEecCceeeeecceeeeecCCCC-CCceeeeeeeee Q lcl|Aclame:pro 77 DNVSFVIPDYCLIKGEVQSVSFPPNP-DGSIHHFEIVVG 114 (121) Q Consensus 77 dnvsfvipdyclikgevqsvsfppnp-dgsihhfeivvg 114 (121) +.+.|-=-+| .+++|.=.-.| .+.+||+|+-|= T Consensus 80 skivfdG~ey-----tI~~i~~~~e~~sn~v~~yELEVi 113 (113) T protein:vir:98 80 SVLHFDGRDH-----VITKVIPNHEAYSKTLYSYELEVV 113 (113) T ss_pred CeEEeCCcce-----EEeeeccCcCCCCCceeEEEEEEC Confidence 7666543334 24555555555 789999999665 No 5 >protein:vir:1582 Length: 117 # NCBI annotation: minor capsid protein # Family: family:all:2747 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695164;swissprot:trembl:o03932;genbank:gi:23455805;uniprot:O03932;genbank:GeneID:955538 Probab=30.11 E-value=0.87 Score=20.92 Aligned_cols=106 Identities=18% Similarity=0.292 Sum_probs=54.4 Q ss_pred cCCCcchhhccceeEEe--cCCCcchhhhccccc-cchhhHHhHHHHHhhhhhccceeee-----hhhhhhccceeeeec Q lcl|Aclame:pro 4 QLPPIPEAILNTEVTIT--SNSGRDDFGNLLPDA-INKSMFRYEFEKLVNKTEEGLNIRY-----IVNLFCNKLNFVVSE 75 (121) Q Consensus 4 qlppipeailntevtit--snsgrddfgnllpda-inksmfryefeklvnkteeglniry-----ivnlfcnklnfvvse 75 (121) -+||||...|+-++||. --.+.||+|....+. +--+--|+.-.-...-+..+-.+-+ +---.|+-+ ..+++ T Consensus 1 ~m~~ipk~~l~~sitlk~~~~~~~d~yg~~~y~~pi~I~nvrvd~~t~ysgt~n~Rq~~~navif~y~~~s~P~-~~~~~ 79 (117) T protein:vir:15 1 MMMKPPKWMCQQTITLTLTDPTKTDEWGQLLTGEPVTIEHCVVQPQTIYSGSNNDRTIVANAVVFVYAGISNPL-LTVTK 79 (117) T ss_pred CCCccchhhccceEEEEEeccCCcCCCCCeeecCceeeeeeEecccceecccCCCCeEEeceEEEEecccCCcc-eEEec Confidence 78999999999999976 557899999877632 2111112221111111111111111 111223322 22333 Q ss_pred ---CCceeEecCceeeeecceeeeecCCCCCCceeeeeeeee Q lcl|Aclame:pro 76 ---GDNVSFVIPDYCLIKGEVQSVSFPPNPDGSIHHFEIVVG 114 (121) Q Consensus 76 ---gdnvsfvipdyclikgevqsvsfppnpdgsihhfeivvg 114 (121) |+.+-|-.-+|-.-| |...--| =++.+|++|+-|= T Consensus 80 ~~~g~ki~f~G~eYtI~~--i~~~~ep--~sn~vy~yElEVi 117 (117) T protein:vir:15 80 NNVGSKLVFEGEEYTVQK--IIDNREP--FSNELHSYELEVL 117 (117) T ss_pred ccccceeeeCCeeEEeee--eeecccC--cCCcEEEEEEEeC Confidence 666666655554321 1111111 2678999999765 No 6 >protein:vir:79686 Length: 118 # NCBI annotation: hypothetical protein # Family: family:all:2747 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285885;genbank:gi:148750842;genbank:GeneID:5220385 Probab=27.56 E-value=0.95 Score=20.70 Aligned_cols=104 Identities=18% Similarity=0.284 Sum_probs=47.8 Q ss_pred cCCCcchhhccceeEEe---cCCCcchhhhccccc---cchhhHHhHHHHHhhhhhccceeee-----hhhhhhccc-ee Q lcl|Aclame:pro 4 QLPPIPEAILNTEVTIT---SNSGRDDFGNLLPDA---INKSMFRYEFEKLVNKTEEGLNIRY-----IVNLFCNKL-NF 71 (121) Q Consensus 4 qlppipeailntevtit---snsgrddfgnllpda---inksmfryefeklvnkteeglniry-----ivnlfcnkl-nf 71 (121) -+||||...|+-++|+. --.+.|++|....+. |+.-.| .-.-...-+..+-.+-+ +---.|+-+ .| T Consensus 1 ~m~~ipk~~l~~sit~k~~~~~~~~D~yg~~~y~~p~~I~nvrv--d~~t~ySgt~n~rq~~~navif~y~~~s~p~~~~ 78 (118) T protein:vir:79 1 MKLPIPYQMAVSTVHLKLTDQSAKKDRYGRTVPTWEGDITKCVV--NMQTTYSGTNNDRQIVANGLIVMYAGYSNPIPTL 78 (118) T ss_pred CCCccchhhccceEEEEEeccccCcCCCCCeeccCCeeeeeeEe--cccceecccCCCCeEEeceEEEEecccCccccEE Confidence 68999999999999997 456889999876554 332222 11111111111111111 111112211 11 Q ss_pred e-eecCCceeEecCceeeeecceeeeecCC-CCCCceeeeeeeee Q lcl|Aclame:pro 72 V-VSEGDNVSFVIPDYCLIKGEVQSVSFPP-NPDGSIHHFEIVVG 114 (121) Q Consensus 72 v-vsegdnvsfvipdyclikgevqsvsfpp-npdgsihhfeivvg 114 (121) . =|-|+.+-|-=-+|- |+++-=-- .=++.+|++|+-|= T Consensus 79 ~~~s~g~kivfdG~eYt-----I~~i~~~~ep~sn~vy~yElEVi 118 (118) T protein:vir:79 79 TKENLGSKLTYQGLDYT-----VTSLNRFDQPGTEDLYCYELEVI 118 (118) T ss_pred eccccccceeeCCeeEE-----eeeeeecccCcCCcEEEEEEEeC Confidence 1 011333333222222 12221000 12578999998665 No 7 >protein:vir:78048 Length: 117 # NCBI annotation: gp8 # Family: family:all:6564 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468792;genbank:gi:157325373;genbank:GeneID:5601810 Probab=12.07 E-value=3.3 Score=17.75 Aligned_cols=93 Identities=25% Similarity=0.256 Sum_probs=50.6 Q ss_pred cCCCcchh------hhccccccchhhHHh-----------------HHHHHhhhhhccceeeehhhhhhccceeeeecCC Q lcl|Aclame:pro 21 SNSGRDDF------GNLLPDAINKSMFRY-----------------EFEKLVNKTEEGLNIRYIVNLFCNKLNFVVSEGD 77 (121) Q Consensus 21 snsgrddf------gnllpdainksmfry-----------------efeklvnkteeglniryivnlfcnklnfvvsegd 77 (121) --||-.|| .++.||.+--+.-.+ +..|+-.+-+|.--|---.--.||.-+||=+.|| T Consensus 1 mi~gikdfq~~~~~~~~~pdG~GG~~~~~t~~~e~rGylDl~s~~d~~t~~Na~~~dSTHIlI~i~e~~~~k~~vg~igD 80 (117) T protein:vir:78 1 MISGIKDFQIKSGGDNLVPDGKGGYEIPKGVIFEGRGYIDFQSDTDSMTKANTIYPDATHILIYMPEYNNHRPFVGGIGD 80 (117) T ss_pred CccccceeEEEecCCccCcCCCCCcccccceeEEEEEEEEEeeCCcccccceecccccceEEEEeeccCCCccccCCccc Confidence 11222333 134444432211100 0111112223333222114456888889888899 Q ss_pred ceeEecCceeeeecceeeeecCCCCCCceeeeeeeeeeccccCC Q lcl|Aclame:pro 78 NVSFVIPDYCLIKGEVQSVSFPPNPDGSIHHFEIVVGEVTEHEL 121 (121) Q Consensus 78 nvsfvipdyclikgevqsvsfppnpdgsihhfeivvgevtehel 121 (121) +|+ -+|+.--|.|--+|=|--||.||..-+-..-.- T Consensus 81 ~vd--------~nG~~Y~Vt~vDDpv~i~hHLEI~L~f~p~~~r 116 (117) T protein:vir:78 81 HVS--------SNGTDFVITYVDDVLNIGHHLEIPLRENPKLRR 116 (117) T ss_pred eee--------eCCcEEEEEeecCccccccceeeeeccCccccC Confidence 852 479999999999999999999998765332211 No 8 >protein:vir:102144 Length: 113 # NCBI annotation: phage head-tail adaptor, putative # Family: family:all:3858 # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699939;genbank:gi:110804032;genbank:GeneID:4206688 Probab=6.05 E-value=11 Score=14.85 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=54.4 Q ss_pred cchhhccceeEEec-CCCcchhhhccccccchhhHHhHH------HHHhhhhhcc-----ceeeehhhhhhccceee--- Q lcl|Aclame:pro 8 IPEAILNTEVTITS-NSGRDDFGNLLPDAINKSMFRYEF------EKLVNKTEEG-----LNIRYIVNLFCNKLNFV--- 72 (121) Q Consensus 8 ipeailntevtits-nsgrddfgnllpdainksmfryef------eklvnkteeg-----lniryivnlfcnklnfv--- 72 (121) +-..-||..++|-. ...+|++|+..+.-..-.-..=+. |...+..+.+ ..||| |.+++.. T Consensus 1 M~~G~L~~rI~i~~~~~~~d~~G~~~~~w~~~~~~wA~v~~~~g~E~~~a~~~~~~~~~~f~iRy-----~~~i~~~~~~ 75 (113) T protein:vir:10 1 MAECRLNERIIIEELAIIQNSNGFEEEKWHEYYRCWSSFKKVKGSKFIAAKADNAENIVTFTIRY-----CNKVKILLDI 75 (113) T ss_pred CCccccCceEEEEeeeeccCCCCCeecceEeEEEEEEEEEecCchheeeccceeeeeeEEEEEEe-----cCCCcccccc Confidence 66678999999987 557889999876532211111111 1111111111 12333 3332221 Q ss_pred -eecCCceeEecCceeeeecceeeeecCCCCCCceeeeeeeeeecc Q lcl|Aclame:pro 73 -VSEGDNVSFVIPDYCLIKGEVQSVSFPPNPDGSIHHFEIVVGEVT 117 (121) Q Consensus 73 -vsegdnvsfvipdyclikgevqsvsfppnpdgsihhfeivvgevt 117 (121) +..++.+ ..+|.+-.+..+.++++.=...+|..-+|| T Consensus 76 ~it~~~ri--------~~~g~~y~I~~i~~~~~~~~~l~i~~~~v~ 113 (113) T protein:vir:10 76 EAINKFRI--------NFKGHYYKLEYVDDYDQGHEWVDLKAKIIS 113 (113) T ss_pred cCCCCCeE--------EECCeEEEEEecCCcccCCeEEEEEEEEeC Confidence 1222222 236888888888888887667899999999 No 9 >protein:vir:488 Length: 187 # NCBI annotation: hypothetical protein # Family: family:all:964 # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543095;swissprot:trembl:q8w624;genbank:gi:18249907;uniprot:Q8W624;genbank:GeneID:929697 Probab=5.12 E-value=8.8 Score=15.40 Aligned_cols=79 Identities=23% Similarity=0.308 Sum_probs=29.0 Q ss_pred CcccCCCcchhhcccee-EEecCCCc----chhhhccccccc--hhhHHhHHHHHhhhhhccceeeehhhhhhccceeee Q lcl|Aclame:pro 1 MSFQLPPIPEAILNTEV-TITSNSGR----DDFGNLLPDAIN--KSMFRYEFEKLVNKTEEGLNIRYIVNLFCNKLNFVV 73 (121) Q Consensus 1 msfqlppipeailntev-titsnsgr----ddfgnllpdain--ksmfryefeklvnkteeglniryivnlfcnklnfvv 73 (121) |.++-++--.++.-..= .+.++.|+ ++|- ..+.|. ++.--.|...| T Consensus 101 ~GW~P~~~~~pi~~~gG~lvd~~~g~l~y~~~F~--~~~ql~~~~t~~~~~~~~l------------------------- 153 (187) T protein:vir:48 101 LGWMPDPQGGEIVYAGGTLLDLNRYELYYQFDFT--AKYEITEEDTRQAEDVNAL------------------------- 153 (187) T ss_pred hCcCcCCCCceEEEcCceEeeecCcEEEEEEEEE--eecccCCCCCccHHHHhCC------------------------- Confidence 66665543332211000 01111221 1110 011111 11111122111 Q ss_pred ecCCceeEecCceeeeecceeeeecCCCCCCce-eeeeeeeeec Q lcl|Aclame:pro 74 SEGDNVSFVIPDYCLIKGEVQSVSFPPNPDGSI-HHFEIVVGEV 116 (121) Q Consensus 74 segdnvsfvipdyclikgevqsvsfppnpdgsi-hhfeivvgev 116 (121) ||.-.+.=.|-.+.=-|.|||+| ||||+-.-|- T Consensus 154 ----------~~l~~~~~~~d~~dp~~~pd~~~~~~~~~~~~~~ 187 (187) T protein:vir:48 154 ----------PDLSLLSIDVDYIDPGTGPDGDIEHHLEMRFPQK 187 (187) T ss_pred ----------CCcceEEEEEeccCCCCCCCCcceeeEEEeeCCC Confidence 22222222233333348999999 5788866554 No 10 >protein:vir:4461 Length: 186 # NCBI annotation: hypothetical protein # Family: family:all:964 # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700384;genbank:gi:23505456;genbank:GeneID:955663 Probab=3.83 E-value=13 Score=14.47 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=29.1 Q ss_pred CcccCCCcchhhccceeEEecCCCcchhhhccccccchh--hHHhHH--HHHhhhhhccceeeehhhhhhccceeeeecC Q lcl|Aclame:pro 1 MSFQLPPIPEAILNTEVTITSNSGRDDFGNLLPDAINKS--MFRYEF--EKLVNKTEEGLNIRYIVNLFCNKLNFVVSEG 76 (121) Q Consensus 1 msfqlppipeailntevtitsnsgrddfgnllpdainks--mfryef--eklvnkteeglniryivnlfcnklnfvvseg 76 (121) |.|+-++--..+. .. =|.|+. ++.. .|+++| +-.+..++ -..-+++-+ T Consensus 101 ~GW~P~~~~~pi~-----~~-------gG~lvd--~~~g~l~y~~~F~~~~~l~~~~-t~~~~~~~~------------- 152 (186) T protein:vir:44 101 LGWEPDSQVHEIQ-----YA-------GGMLLD--LNRHELYYQFDFTVKYEITETD-TRQQDDLDG------------- 152 (186) T ss_pred cCcCcCCCCceEE-----Ec-------CceEEe--ecCcEEEEEEEEEEeeccCCCC-ccchHHHhC------------- Confidence 7776543222211 10 022221 1111 222222 22222111 000001100 Q ss_pred CceeEecCceeeeecceeeeecCCCCCCce-eeeeeeeee Q lcl|Aclame:pro 77 DNVSFVIPDYCLIKGEVQSVSFPPNPDGSI-HHFEIVVGE 115 (121) Q Consensus 77 dnvsfvipdyclikgevqsvsfppnpdgsi-hhfeivvge 115 (121) .|+.--++=.|-.+.=-|.|||+| |||||-.-| T Consensus 153 ------l~~l~~~~~~~d~~~p~~g~dg~~e~~~~~~~~~ 186 (186) T protein:vir:44 153 ------LPDLKTLSIDVDFIEPGTGPDGDIEHHTEITFQE 186 (186) T ss_pred ------CCCcceEEEEEecccCCCCCCCceeeeEEEeecC Confidence 122211221222222248999999 679988777 Done!