Query lcl|Aclame:protein:vir:78907|NCBI_annot:gp3|genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Match_columns 518 No_of_seqs 153 out of 197 Neff 8.4 Searched_HMMs 1612 Date Tue Dec 3 03:08:56 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_47 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_47_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:78907 Length: 518 100.0 3E-162 2E-165 906.4 56.8 518 1-518 1-518 (518) 2 protein:vir:98883 Length: 517 100.0 2E-122 1E-125 687.5 55.1 486 5-518 1-514 (517) 3 protein:vir:4782 Length: 522 # 100.0 1E-122 8E-126 688.8 53.5 491 1-518 1-519 (522) 4 protein:vir:79703 Length: 505 100.0 5E-120 3E-123 674.5 54.2 477 1-518 1-504 (505) 5 protein:vir:1587 Length: 508 # 100.0 2E-117 1E-120 660.4 54.5 480 1-518 1-507 (508) 6 protein:vir:3028 Length: 500 # 100.0 7E-114 4E-117 640.9 54.3 475 1-518 1-496 (500) 7 protein:vir:9815 Length: 500 # 100.0 7E-114 4E-117 640.9 54.3 475 1-518 1-496 (500) 8 protein:vir:80959 Length: 499 100.0 2E-109 1E-112 616.9 52.0 480 1-517 16-499 (499) 9 protein:vir:38 Length: 496 # N 100.0 4E-102 2E-105 576.5 52.9 477 1-517 16-496 (496) 10 protein:vir:5961 Length: 503 # 100.0 3.1E-47 1.9E-50 275.6 46.0 451 1-518 24-500 (503) 11 protein:vir:79043 Length: 479 100.0 1.1E-47 7.1E-51 277.9 42.9 450 1-518 18-474 (479) 12 protein:vir:96179 Length: 468 100.0 1.9E-47 1.2E-50 276.7 42.4 440 7-518 1-467 (468) 13 protein:vir:96839 Length: 474 100.0 3.7E-47 2.3E-50 275.1 43.1 438 1-518 25-467 (474) 14 protein:vir:95113 Length: 474 100.0 7.1E-47 4.4E-50 273.6 42.9 435 1-518 7-462 (474) 15 protein:vir:105292 Length: 478 100.0 1.6E-46 1E-49 271.6 43.2 443 1-518 2-472 (478) 16 protein:vir:96240 Length: 511 100.0 5.6E-46 3.5E-49 268.7 44.6 450 1-518 39-497 (511) 17 protein:vir:4898 Length: 502 # 100.0 1E-45 6.4E-49 267.2 44.8 443 1-518 38-486 (502) 18 protein:vir:95806 Length: 440 100.0 7.1E-46 4.4E-49 268.1 43.0 434 6-518 1-437 (440) 19 protein:vir:97447 Length: 474 100.0 9.7E-46 6E-49 267.4 43.2 439 1-518 7-462 (474) 20 protein:vir:94498 Length: 474 100.0 9.7E-46 6E-49 267.4 43.2 439 1-518 7-462 (474) 21 protein:vir:94546 Length: 506 100.0 7.4E-46 4.6E-49 268.0 42.5 449 1-518 20-492 (506) 22 protein:vir:9922 Length: 489 # 100.0 2.7E-45 1.7E-48 264.9 44.1 451 1-518 13-487 (489) 23 protein:vir:96494 Length: 501 100.0 2.8E-45 1.7E-48 264.8 44.1 440 1-518 37-482 (501) 24 protein:vir:107112 Length: 478 100.0 1.8E-45 1.1E-48 265.8 43.0 440 1-518 23-476 (478) 25 protein:vir:2732 Length: 501 # 100.0 3.6E-45 2.2E-48 264.3 44.4 440 1-518 37-482 (501) 26 protein:vir:99781 Length: 511 100.0 2.5E-45 1.5E-48 265.1 43.0 454 1-518 11-497 (511) 27 protein:vir:105461 Length: 470 100.0 1.1E-44 6.7E-48 261.6 44.4 459 1-518 1-465 (470) 28 protein:vir:99522 Length: 470 100.0 2.1E-44 1.3E-47 260.0 44.5 436 1-518 19-468 (470) 29 protein:vir:106639 Length: 481 100.0 4.3E-44 2.6E-47 258.4 45.5 441 1-518 1-474 (481) 30 protein:vir:103951 Length: 511 100.0 3E-44 1.9E-47 259.2 44.6 449 1-518 39-497 (511) 31 protein:vir:78805 Length: 511 100.0 1.9E-44 1.2E-47 260.3 43.5 455 1-518 11-497 (511) 32 protein:vir:96366 Length: 511 100.0 1.9E-44 1.2E-47 260.3 43.5 455 1-518 11-497 (511) 33 protein:vir:3609 Length: 452 # 100.0 3.4E-44 2.1E-47 258.9 43.0 425 1-518 17-447 (452) 34 protein:vir:3964 Length: 453 # 100.0 5.2E-44 3.2E-47 257.9 43.8 429 1-518 1-445 (453) 35 protein:vir:106571 Length: 499 100.0 7.4E-44 4.6E-47 257.0 44.0 434 1-518 1-470 (499) 36 protein:vir:97171 Length: 512 100.0 6.1E-44 3.8E-47 257.5 43.4 449 1-518 21-498 (512) 37 protein:vir:1236 Length: 483 # 100.0 6.7E-44 4.2E-47 257.3 42.9 437 1-518 29-471 (483) 38 protein:vir:9306 Length: 511 # 100.0 1.3E-43 8.1E-47 255.7 43.9 449 1-518 39-502 (511) 39 protein:vir:95899 Length: 474 100.0 1E-43 6.4E-47 256.3 42.7 435 1-518 21-462 (474) 40 protein:vir:96266 Length: 474 100.0 1E-43 6.4E-47 256.3 42.7 435 1-518 21-462 (474) 41 protein:vir:105889 Length: 474 100.0 4.3E-43 2.7E-46 252.9 44.7 447 5-518 1-468 (474) 42 protein:vir:94101 Length: 474 100.0 4.3E-43 2.7E-46 252.9 44.7 447 5-518 1-468 (474) 43 protein:vir:93747 Length: 472 100.0 2.7E-43 1.7E-46 254.0 43.2 439 1-518 18-460 (472) 44 protein:vir:102950 Length: 471 100.0 9.8E-43 6.1E-46 250.9 44.7 457 1-518 1-469 (471) 45 protein:vir:94805 Length: 492 100.0 2E-42 1.3E-45 249.2 43.0 435 1-518 43-480 (492) 46 protein:vir:97336 Length: 492 100.0 2.4E-42 1.5E-45 248.8 42.4 435 1-518 43-480 (492) 47 protein:vir:9871 Length: 429 # 100.0 1.3E-41 7.8E-45 244.8 43.7 421 3-518 1-424 (429) 48 protein:vir:733 Length: 453 # 100.0 1.5E-41 9.1E-45 244.4 43.5 430 1-518 1-451 (453) 49 protein:vir:78083 Length: 537 100.0 9.8E-40 6.1E-43 234.4 42.9 470 1-518 8-522 (537) 50 protein:vir:102330 Length: 451 100.0 1.6E-38 1E-41 227.7 41.7 431 5-515 1-451 (451) 51 protein:vir:105819 Length: 456 100.0 1.2E-36 7.5E-40 217.5 38.8 441 1-517 1-456 (456) 52 protein:vir:102602 Length: 456 100.0 1.2E-36 7.5E-40 217.5 38.8 441 1-517 1-456 (456) 53 protein:vir:78227 Length: 480 100.0 3E-36 1.9E-39 215.3 40.1 439 1-518 1-473 (480) 54 protein:vir:78537 Length: 480 100.0 7E-36 4.4E-39 213.3 41.8 438 1-518 1-461 (480) 55 protein:vir:7987 Length: 456 # 100.0 1.2E-36 7.2E-40 217.6 37.0 442 1-518 1-454 (456) 56 protein:vir:7768 Length: 484 # 100.0 7.1E-37 4.4E-40 218.8 35.4 439 7-518 1-474 (484) 57 protein:vir:2427 Length: 485 # 100.0 1.6E-35 9.7E-39 211.4 40.0 436 1-518 6-482 (485) 58 protein:vir:2500 Length: 501 # 100.0 2.2E-35 1.3E-38 210.6 40.5 449 1-518 22-500 (501) 59 protein:vir:104082 Length: 485 100.0 7.4E-35 4.6E-38 207.7 40.5 436 1-518 8-482 (485) 60 protein:vir:4223 Length: 486 # 100.0 1.1E-34 6.8E-38 206.8 39.7 438 1-518 6-484 (486) 61 protein:vir:98444 Length: 434 100.0 5.2E-34 3.2E-37 203.1 41.2 414 33-518 1-430 (434) 62 protein:vir:80680 Length: 441 100.0 1.2E-33 7.5E-37 201.1 42.3 422 3-510 1-441 (441) 63 protein:vir:99072 Length: 479 100.0 1.4E-34 8.5E-38 206.2 37.0 431 1-518 7-479 (479) 64 protein:vir:99916 Length: 504 100.0 5.2E-33 3.2E-36 197.6 40.2 443 1-518 16-487 (504) 65 protein:vir:101494 Length: 527 100.0 4.1E-33 2.5E-36 198.1 34.8 476 1-518 1-512 (527) 66 protein:vir:102239 Length: 527 100.0 4.3E-33 2.7E-36 198.0 34.8 476 1-518 1-512 (527) 67 protein:vir:2341 Length: 488 # 100.0 2.4E-32 1.5E-35 193.9 38.8 445 1-518 1-479 (488) 68 protein:vir:7430 Length: 563 # 100.0 1.2E-30 7.4E-34 184.6 38.1 480 1-518 1-530 (563) 69 protein:vir:8184 Length: 474 # 100.0 6.1E-29 3.8E-32 175.3 37.9 444 1-518 10-471 (474) 70 protein:vir:9568 Length: 410 # 100.0 1.9E-27 1.2E-30 167.1 36.8 396 15-505 1-410 (410) 71 protein:vir:9751 Length: 422 # 99.9 8.6E-26 5.3E-29 158.0 36.8 407 1-502 1-422 (422) 72 protein:vir:94742 Length: 409 99.9 1.1E-25 6.6E-29 157.5 34.3 395 3-487 1-409 (409) 73 protein:vir:1634 Length: 409 # 99.9 6.9E-25 4.3E-28 153.0 34.4 395 3-487 1-409 (409) 74 protein:vir:95149 Length: 501 99.6 2.4E-13 1.5E-16 89.8 35.9 447 1-518 1-494 (501) 75 protein:vir:80453 Length: 535 99.6 7.6E-13 4.7E-16 87.0 35.7 447 1-518 28-529 (535) 76 protein:vir:93630 Length: 776 99.6 1.8E-13 1.1E-16 90.5 32.0 479 1-518 37-631 (776) 77 protein:vir:79538 Length: 502 99.5 3.8E-12 2.3E-15 83.2 38.2 439 5-518 1-496 (502) 78 protein:vir:97265 Length: 513 99.5 8.4E-12 5.2E-15 81.3 35.5 432 1-518 1-503 (513) 79 protein:vir:817 Length: 714 # 99.5 8.4E-12 5.2E-15 81.3 35.4 488 1-518 14-613 (714) 80 protein:vir:10117 Length: 714 99.5 8.4E-12 5.2E-15 81.3 35.4 488 1-518 14-613 (714) 81 protein:vir:2764 Length: 714 # 99.5 8.4E-12 5.2E-15 81.3 35.4 488 1-518 14-613 (714) 82 protein:vir:3296 Length: 714 # 99.5 8.4E-12 5.2E-15 81.3 35.4 488 1-518 14-613 (714) 83 protein:vir:9950 Length: 714 # 99.5 8.4E-12 5.2E-15 81.3 35.4 488 1-518 14-613 (714) 84 protein:vir:94956 Length: 452 99.4 2.2E-11 1.4E-14 79.0 40.1 424 1-518 1-449 (452) 85 protein:vir:80040 Length: 461 99.4 4.4E-12 2.8E-15 82.8 28.5 417 1-517 26-461 (461) 86 protein:vir:95014 Length: 491 99.4 4.7E-11 2.9E-14 77.2 35.6 429 1-518 5-483 (491) 87 protein:vir:8846 Length: 705 # 99.4 1.6E-11 1E-14 79.7 29.8 462 1-518 16-607 (705) 88 protein:vir:96738 Length: 505 99.3 7.4E-11 4.6E-14 76.1 37.0 446 1-518 1-501 (505) 89 protein:vir:108295 Length: 711 99.3 5.2E-12 3.2E-15 82.4 26.1 480 1-518 20-643 (711) 90 protein:vir:104437 Length: 714 99.3 1E-10 6.3E-14 75.4 34.6 486 1-518 8-615 (714) 91 protein:vir:389 Length: 530 # 99.3 1.7E-10 1E-13 74.2 37.3 448 1-518 7-526 (530) 92 protein:vir:105619 Length: 772 99.3 7.5E-11 4.7E-14 76.1 28.3 494 5-518 1-620 (772) 93 protein:vir:95542 Length: 548 99.3 2.4E-10 1.5E-13 73.3 35.5 443 5-518 1-503 (548) 94 protein:vir:3420 Length: 533 # 99.3 3.2E-10 2E-13 72.7 37.2 440 1-518 25-522 (533) 95 protein:vir:6382 Length: 553 # 99.1 1.3E-09 7.9E-13 69.3 35.4 456 3-518 1-552 (553) 96 protein:vir:78393 Length: 489 99.1 1.6E-09 9.8E-13 68.8 36.1 433 1-518 5-484 (489) 97 protein:vir:5249 Length: 437 # 99.1 7.1E-10 4.4E-13 70.7 26.7 405 1-518 12-432 (437) 98 protein:vir:80165 Length: 651 99.1 1.8E-09 1.1E-12 68.6 32.8 467 1-518 3-601 (651) 99 protein:vir:96783 Length: 488 99.1 1.9E-09 1.1E-12 68.5 35.5 429 1-503 14-488 (488) 100 protein:vir:107742 Length: 537 99.1 5.8E-10 3.6E-13 71.2 25.6 427 1-518 58-520 (537) 101 protein:vir:77597 Length: 725 99.0 6.7E-09 4.2E-12 65.4 28.3 474 1-518 1-592 (725) 102 protein:vir:94049 Length: 532 99.0 5E-09 3.1E-12 66.1 26.1 440 1-518 33-506 (532) 103 protein:vir:10321 Length: 495 98.9 1.1E-08 6.9E-12 64.2 37.1 444 5-518 1-487 (495) 104 protein:vir:79647 Length: 435 98.9 6.3E-10 3.9E-13 71.0 18.8 413 1-518 1-432 (435) 105 protein:vir:172 Length: 708 # 98.9 1.7E-08 1.1E-11 63.2 28.7 498 3-518 1-614 (708) 106 protein:vir:95821 Length: 763 98.9 2E-08 1.2E-11 62.8 30.3 477 1-518 12-632 (763) 107 protein:vir:100920 Length: 725 98.9 2.1E-08 1.3E-11 62.7 30.8 490 1-518 1-591 (725) 108 protein:vir:9263 Length: 725 # 98.9 2.5E-08 1.6E-11 62.2 29.9 481 1-518 1-605 (725) 109 protein:vir:99563 Length: 862 98.8 3.2E-08 2E-11 61.7 25.7 440 1-518 78-574 (862) 110 protein:vir:107662 Length: 427 98.8 9.1E-09 5.7E-12 64.7 22.3 398 7-517 1-427 (427) 111 protein:vir:104338 Length: 422 98.8 2.4E-08 1.5E-11 62.3 23.0 403 5-510 1-422 (422) 112 protein:vir:96068 Length: 765 98.8 6.2E-08 3.8E-11 60.1 26.1 423 1-518 71-533 (765) 113 protein:vir:105429 Length: 708 98.7 7.9E-08 4.9E-11 59.5 33.8 490 1-518 1-625 (708) 114 protein:vir:105520 Length: 706 98.7 1E-07 6.3E-11 58.9 27.4 486 1-518 1-602 (706) 115 protein:vir:3520 Length: 720 # 98.6 1.9E-07 1.2E-10 57.5 29.7 490 7-518 1-623 (720) 116 protein:vir:102668 Length: 547 98.6 2.1E-07 1.3E-10 57.2 34.1 466 5-518 1-540 (547) 117 protein:vir:95449 Length: 584 98.6 2.8E-07 1.7E-10 56.5 32.2 470 1-518 1-583 (584) 118 protein:vir:8317 Length: 409 # 98.5 3.1E-07 1.9E-10 56.3 24.6 386 1-518 1-408 (409) 119 protein:vir:95315 Length: 559 98.5 3.4E-07 2.1E-10 56.0 30.8 475 7-518 1-556 (559) 120 protein:vir:7321 Length: 556 # 98.5 5.1E-07 3.2E-10 55.1 32.7 478 7-518 1-552 (556) 121 protein:vir:98506 Length: 555 98.4 6.9E-07 4.3E-10 54.4 31.6 474 1-518 1-553 (555) 122 protein:vir:107404 Length: 555 98.4 6.9E-07 4.3E-10 54.4 31.6 474 1-518 1-553 (555) 123 protein:vir:107822 Length: 555 98.4 6.9E-07 4.3E-10 54.4 31.6 474 1-518 1-553 (555) 124 protein:vir:78696 Length: 542 98.4 8.5E-07 5.3E-10 53.9 32.7 463 7-518 1-530 (542) 125 protein:vir:81152 Length: 411 98.4 8.6E-07 5.4E-10 53.8 27.0 394 1-518 1-409 (411) 126 protein:vir:94599 Length: 641 98.4 1E-06 6.5E-10 53.4 29.2 470 1-518 1-595 (641) 127 protein:vir:1326 Length: 457 # 98.3 1.1E-06 7.1E-10 53.2 28.7 413 1-518 1-448 (457) 128 protein:vir:105002 Length: 432 98.3 1.3E-06 7.9E-10 52.9 30.3 409 1-518 1-429 (432) 129 protein:vir:107605 Length: 432 98.3 1.3E-06 7.9E-10 52.9 30.3 409 1-518 1-429 (432) 130 protein:vir:102855 Length: 432 98.3 1.3E-06 7.9E-10 52.9 30.3 409 1-518 1-429 (432) 131 protein:vir:103765 Length: 549 98.3 1.3E-06 8E-10 52.9 29.7 476 7-518 1-538 (549) 132 protein:vir:6240 Length: 457 # 98.3 1.5E-06 9.1E-10 52.6 29.2 414 1-518 1-444 (457) 133 protein:vir:1538 Length: 535 # 98.2 2.5E-06 1.5E-09 51.3 35.8 448 1-518 1-523 (535) 134 protein:vir:79772 Length: 648 98.2 3.4E-06 2.1E-09 50.5 30.4 428 1-518 8-489 (648) 135 protein:vir:3361 Length: 535 # 98.0 7.8E-06 4.8E-09 48.6 36.4 448 7-518 1-519 (535) 136 protein:vir:1785 Length: 555 # 97.9 1E-05 6.4E-09 47.9 32.5 456 7-518 1-541 (555) 137 protein:vir:102080 Length: 429 97.9 1.2E-05 7.5E-09 47.6 28.6 404 1-518 1-426 (429) 138 protein:vir:6322 Length: 510 # 97.8 1.8E-05 1.1E-08 46.5 31.8 451 7-518 1-509 (510) 139 protein:vir:1380 Length: 422 # 97.8 2.2E-05 1.4E-08 46.1 28.6 410 1-518 1-421 (422) 140 protein:vir:4454 Length: 414 # 97.7 2.4E-05 1.5E-08 45.9 26.6 396 1-518 1-407 (414) 141 protein:vir:100187 Length: 385 97.7 2.4E-05 1.5E-08 45.9 25.8 377 1-517 1-385 (385) 142 protein:vir:100882 Length: 383 97.7 2.6E-05 1.6E-08 45.7 27.8 368 1-518 1-380 (383) 143 protein:vir:81095 Length: 416 97.6 3.4E-05 2.1E-08 45.1 29.2 391 1-518 1-412 (416) 144 protein:vir:4598 Length: 416 # 97.6 3.4E-05 2.1E-08 45.1 29.2 391 1-518 1-412 (416) 145 protein:vir:105782 Length: 449 97.6 3.4E-05 2.1E-08 45.1 25.0 411 1-518 7-445 (449) 146 protein:vir:94709 Length: 522 97.6 3.9E-05 2.4E-08 44.8 36.7 463 1-518 1-519 (522) 147 protein:vir:102118 Length: 409 97.6 4E-05 2.5E-08 44.7 26.5 392 1-518 1-407 (409) 148 protein:vir:81072 Length: 432 97.6 4.5E-05 2.8E-08 44.4 26.4 402 1-518 7-427 (432) 149 protein:vir:189 Length: 424 # 97.5 4.9E-05 3E-08 44.2 27.1 393 1-512 4-424 (424) 150 protein:vir:93610 Length: 454 97.5 5E-05 3.1E-08 44.2 28.2 402 7-518 1-433 (454) 151 protein:vir:79984 Length: 441 97.5 5.1E-05 3.1E-08 44.1 27.2 401 12-518 1-437 (441) 152 protein:vir:9408 Length: 441 # 97.5 5.1E-05 3.1E-08 44.1 27.2 401 12-518 1-437 (441) 153 protein:vir:98396 Length: 441 97.5 5.8E-05 3.6E-08 43.8 27.7 398 12-518 1-437 (441) 154 protein:vir:97060 Length: 432 97.5 5.9E-05 3.6E-08 43.8 28.1 402 1-518 7-427 (432) 155 protein:vir:10362 Length: 432 97.5 6.2E-05 3.8E-08 43.7 27.5 401 1-518 7-427 (432) 156 protein:vir:100039 Length: 522 97.5 6.3E-05 3.9E-08 43.6 30.8 458 5-518 1-512 (522) 157 protein:vir:3843 Length: 397 # 97.4 6.7E-05 4.2E-08 43.5 26.5 378 1-518 1-394 (397) 158 protein:vir:8883 Length: 543 # 97.4 7.2E-05 4.5E-08 43.3 29.8 466 1-518 1-534 (543) 159 protein:vir:9702 Length: 406 # 97.4 7.7E-05 4.8E-08 43.1 26.2 366 1-518 1-397 (406) 160 protein:vir:103330 Length: 517 97.4 8E-05 4.9E-08 43.1 35.9 448 5-518 1-516 (517) 161 protein:vir:100150 Length: 437 97.4 8.2E-05 5.1E-08 43.0 30.3 401 1-518 1-424 (437) 162 protein:vir:102727 Length: 945 97.4 8.4E-05 5.2E-08 42.9 27.5 425 1-518 41-530 (945) 163 protein:vir:100249 Length: 431 97.3 9E-05 5.6E-08 42.8 27.0 404 1-511 1-431 (431) 164 protein:vir:99672 Length: 532 97.3 0.00012 7.2E-08 42.2 32.7 460 1-516 1-532 (532) 165 protein:vir:7407 Length: 392 # 97.2 0.00013 8.3E-08 41.8 27.4 383 3-517 1-392 (392) 166 protein:vir:483 Length: 413 # 97.2 0.00014 8.9E-08 41.6 27.9 398 9-518 1-412 (413) 167 protein:vir:80644 Length: 551 97.2 0.00015 9.3E-08 41.6 28.7 431 1-518 5-526 (551) 168 protein:vir:8418 Length: 409 # 97.1 0.00018 1.1E-07 41.1 28.4 387 1-518 1-408 (409) 169 protein:vir:4509 Length: 424 # 97.0 0.00021 1.3E-07 40.8 24.0 407 3-516 1-424 (424) 170 protein:vir:78942 Length: 510 97.0 0.00023 1.4E-07 40.5 34.2 456 7-518 1-509 (510) 171 protein:vir:94572 Length: 535 96.9 0.00025 1.5E-07 40.4 36.8 452 1-518 1-520 (535) 172 protein:vir:106282 Length: 521 96.7 0.0004 2.5E-07 39.2 26.0 421 1-513 47-521 (521) 173 protein:vir:4337 Length: 434 # 96.7 0.0004 2.5E-07 39.2 28.5 403 3-518 1-429 (434) 174 protein:vir:3153 Length: 467 # 96.6 0.00044 2.7E-07 39.0 34.4 396 59-518 1-437 (467) 175 protein:vir:1266 Length: 416 # 96.6 0.00047 2.9E-07 38.8 27.8 394 5-518 1-416 (416) 176 protein:vir:95378 Length: 406 96.6 0.00047 2.9E-07 38.8 26.5 385 1-518 1-403 (406) 177 protein:vir:7017 Length: 515 # 96.6 0.00048 3E-07 38.8 32.9 452 1-518 6-515 (515) 178 protein:vir:3989 Length: 392 # 96.5 0.00053 3.3E-07 38.6 27.7 380 3-518 1-388 (392) 179 protein:vir:1023 Length: 392 # 96.5 0.00053 3.3E-07 38.6 27.7 380 3-518 1-388 (392) 180 protein:vir:101806 Length: 516 96.5 0.00053 3.3E-07 38.5 23.2 426 1-513 7-516 (516) 181 protein:vir:101189 Length: 516 96.5 0.00053 3.3E-07 38.5 23.2 426 1-513 7-516 (516) 182 protein:vir:2683 Length: 412 # 96.5 0.00059 3.6E-07 38.3 26.8 393 1-518 1-412 (412) 183 protein:vir:4952 Length: 386 # 96.4 0.00062 3.8E-07 38.2 27.4 373 1-518 1-380 (386) 184 protein:vir:10447 Length: 536 96.4 0.00069 4.3E-07 37.9 35.7 463 5-518 1-531 (536) 185 protein:vir:9359 Length: 348 # 96.3 0.00074 4.6E-07 37.8 25.0 339 51-518 1-348 (348) 186 protein:vir:101541 Length: 694 96.3 0.00081 5E-07 37.5 18.0 426 1-518 91-544 (694) 187 protein:vir:6210 Length: 394 # 96.2 0.00083 5.1E-07 37.5 25.1 374 1-518 1-389 (394) 188 protein:vir:3648 Length: 695 # 96.2 0.00087 5.4E-07 37.4 17.6 426 1-518 92-545 (695) 189 protein:vir:78589 Length: 695 96.2 0.00091 5.7E-07 37.2 17.8 426 1-518 92-545 (695) 190 protein:vir:104500 Length: 537 96.1 0.00098 6.1E-07 37.1 27.7 431 1-518 29-509 (537) 191 protein:vir:4854 Length: 386 # 96.1 0.001 6.3E-07 37.0 26.8 375 1-517 1-386 (386) 192 protein:vir:101648 Length: 518 96.1 0.0011 6.5E-07 36.9 27.6 399 13-518 1-436 (518) 193 protein:vir:63755 Length: 547 96.1 0.0011 6.5E-07 36.9 30.6 425 1-518 21-522 (547) 194 protein:vir:104259 Length: 403 96.0 0.0011 7E-07 36.8 26.0 382 1-518 1-399 (403) 195 protein:vir:3139 Length: 599 # 96.0 0.0012 7.3E-07 36.6 29.3 482 1-518 1-598 (599) 196 protein:vir:80796 Length: 574 95.9 0.0012 7.7E-07 36.5 26.0 429 1-518 27-525 (574) 197 protein:vir:960 Length: 413 # 95.9 0.0013 7.8E-07 36.5 26.9 395 1-518 1-411 (413) 198 protein:vir:6596 Length: 521 # 95.9 0.0013 8.1E-07 36.4 28.4 420 1-513 46-521 (521) 199 protein:vir:80211 Length: 514 95.9 0.0013 8.3E-07 36.3 32.1 452 7-518 1-509 (514) 200 protein:vir:1884 Length: 424 # 95.8 0.0014 8.5E-07 36.3 27.9 392 1-512 8-424 (424) 201 protein:vir:1431 Length: 419 # 95.8 0.0014 8.9E-07 36.2 26.4 390 13-518 1-410 (419) 202 protein:vir:94426 Length: 409 95.7 0.0017 1E-06 35.8 24.8 397 1-518 1-409 (409) 203 protein:vir:93943 Length: 409 95.5 0.002 1.3E-06 35.4 25.7 390 1-518 1-409 (409) 204 protein:vir:96980 Length: 409 95.4 0.0022 1.3E-06 35.2 25.4 391 1-518 4-409 (409) 205 protein:vir:80134 Length: 403 95.3 0.0023 1.4E-06 35.1 23.1 375 1-518 1-400 (403) 206 protein:vir:103219 Length: 201 95.2 0.00026 1.6E-07 40.2 7.4 186 265-514 1-201 (201) 207 protein:vir:7853 Length: 518 # 95.2 0.0025 1.6E-06 34.8 28.0 397 13-518 1-436 (518) 208 protein:vir:106716 Length: 698 95.2 0.0026 1.6E-06 34.8 20.5 426 1-518 92-555 (698) 209 protein:vir:4995 Length: 384 # 94.9 0.0031 1.9E-06 34.3 19.4 372 1-517 1-384 (384) 210 protein:vir:105064 Length: 421 94.7 0.0037 2.3E-06 33.9 26.4 394 1-518 1-412 (421) 211 protein:vir:100691 Length: 535 94.6 0.004 2.5E-06 33.8 32.8 430 1-518 1-510 (535) 212 protein:vir:96579 Length: 576 94.6 0.004 2.5E-06 33.7 25.0 429 1-518 25-532 (576) 213 protein:vir:104892 Length: 558 94.5 0.0043 2.7E-06 33.5 28.1 436 1-518 5-522 (558) 214 protein:vir:3868 Length: 417 # 94.4 0.0044 2.7E-06 33.5 26.1 385 1-518 1-413 (417) 215 protein:vir:81218 Length: 423 94.4 0.0046 2.8E-06 33.4 25.3 399 1-518 1-418 (423) 216 protein:vir:81017 Length: 521 94.2 0.005 3.1E-06 33.2 29.4 420 1-513 44-521 (521) 217 protein:vir:5737 Length: 419 # 94.2 0.0052 3.2E-06 33.1 28.0 395 1-515 1-419 (419) 218 protein:vir:106999 Length: 564 94.0 0.0056 3.5E-06 32.9 24.3 433 1-518 27-524 (564) 219 protein:vir:1082 Length: 359 # 93.9 0.006 3.7E-06 32.8 26.9 341 1-483 1-359 (359) 220 protein:vir:96988 Length: 516 93.6 0.0069 4.3E-06 32.4 31.8 439 1-518 1-513 (516) 221 protein:vir:99312 Length: 563 93.6 0.007 4.4E-06 32.4 26.8 427 1-518 23-530 (563) 222 protein:vir:95599 Length: 563 93.6 0.007 4.4E-06 32.4 26.8 427 1-518 23-530 (563) 223 protein:vir:103177 Length: 533 92.8 0.01 6.2E-06 31.5 26.6 426 1-518 36-512 (533) 224 protein:vir:9507 Length: 395 # 92.4 0.011 7.1E-06 31.2 20.3 378 1-518 1-394 (395) 225 protein:vir:100650 Length: 395 92.4 0.011 7.1E-06 31.2 20.3 378 1-518 1-394 (395) 226 protein:vir:101289 Length: 395 92.4 0.011 7.1E-06 31.2 20.3 378 1-518 1-394 (395) 227 protein:vir:2198 Length: 536 # 92.4 0.012 7.2E-06 31.2 36.6 458 5-518 1-531 (536) 228 protein:vir:100598 Length: 516 92.3 0.012 7.4E-06 31.1 27.5 425 1-513 43-516 (516) 229 protein:vir:4156 Length: 542 # 92.2 0.012 7.7E-06 31.0 24.3 410 3-518 1-446 (542) 230 protein:vir:80333 Length: 419 91.5 0.016 9.7E-06 30.5 29.0 394 1-518 1-409 (419) 231 protein:vir:101647 Length: 460 91.2 0.017 1.1E-05 30.3 27.7 413 3-517 1-460 (460) 232 protein:vir:6896 Length: 523 # 90.9 0.018 1.1E-05 30.1 26.0 425 1-513 9-523 (523) 233 protein:vir:94666 Length: 723 90.7 0.02 1.2E-05 30.0 26.0 382 15-518 1-439 (723) 234 protein:vir:5665 Length: 511 # 89.4 0.026 1.6E-05 29.2 26.2 427 1-513 1-511 (511) 235 protein:vir:105641 Length: 516 88.8 0.03 1.9E-05 28.9 34.3 434 1-518 1-508 (516) 236 protein:vir:108049 Length: 524 88.4 0.033 2E-05 28.7 26.3 428 1-513 11-524 (524) 237 protein:vir:7208 Length: 524 # 88.0 0.035 2.2E-05 28.6 22.7 426 1-513 47-524 (524) 238 protein:vir:103458 Length: 524 87.3 0.04 2.5E-05 28.3 22.7 426 1-513 47-524 (524) 239 protein:vir:4194 Length: 540 # 86.9 0.043 2.6E-05 28.1 25.0 411 1-518 2-462 (540) 240 protein:vir:8100 Length: 466 # 86.0 0.049 3E-05 27.8 25.3 418 1-518 1-461 (466) 241 protein:vir:99853 Length: 488 85.8 0.05 3.1E-05 27.7 28.4 385 1-518 4-406 (488) 242 protein:vir:345 Length: 663 # 83.5 0.068 4.2E-05 27.0 21.1 462 1-518 1-594 (663) 243 protein:vir:94002 Length: 378 81.5 0.085 5.3E-05 26.5 18.4 357 1-516 1-378 (378) 244 protein:vir:98265 Length: 524 79.9 0.1 6.2E-05 26.1 26.2 419 1-513 49-524 (524) 245 protein:vir:103860 Length: 528 76.1 0.14 8.6E-05 25.3 32.1 402 1-518 1-442 (528) 246 protein:vir:1661 Length: 378 # 74.8 0.15 9.5E-05 25.0 18.6 357 1-516 1-378 (378) 247 protein:vir:4828 Length: 382 # 73.0 0.18 0.00011 24.7 27.4 371 1-517 1-382 (382) 248 protein:vir:4089 Length: 395 # 72.4 0.18 0.00011 24.6 23.7 383 5-518 1-393 (395) 249 protein:vir:98643 Length: 395 70.1 0.21 0.00013 24.3 20.7 378 1-518 1-394 (395) 250 protein:vir:98853 Length: 219 69.0 0.23 0.00014 24.1 11.4 210 181-455 1-219 (219) 251 protein:vir:78641 Length: 278 65.8 0.28 0.00017 23.6 17.9 273 76-451 1-278 (278) 252 protein:vir:99232 Length: 526 64.5 0.3 0.00018 23.5 31.7 404 1-518 26-440 (526) 253 protein:vir:95965 Length: 385 64.4 0.3 0.00019 23.4 21.3 368 1-518 1-380 (385) 254 protein:vir:78161 Length: 355 62.9 0.33 0.0002 23.3 20.5 302 160-518 1-321 (355) 255 protein:vir:101418 Length: 569 55.7 0.47 0.00029 22.4 18.3 444 1-517 39-569 (569) 256 protein:vir:99452 Length: 651 53.9 0.52 0.00032 22.2 21.8 414 1-518 76-536 (651) 257 protein:vir:9641 Length: 395 # 48.2 0.68 0.00042 21.5 23.3 374 1-518 1-394 (395) 258 protein:vir:79233 Length: 526 45.0 0.79 0.00049 21.2 32.3 410 1-518 1-440 (526) 259 protein:vir:93867 Length: 378 44.0 0.82 0.00051 21.0 18.7 351 1-516 1-378 (378) 260 protein:vir:105154 Length: 525 40.1 0.99 0.00061 20.6 16.4 412 1-518 47-500 (525) 261 protein:vir:1986 Length: 512 # 40.0 0.99 0.00062 20.6 30.8 396 1-518 26-436 (512) 262 protein:vir:5839 Length: 533 # 37.0 1.1 0.00071 20.3 23.0 398 1-518 33-481 (533) 263 protein:vir:107880 Length: 491 21.2 2.6 0.0016 18.3 29.8 390 7-518 1-417 (491) No 1 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=100.00 E-value=2.6e-162 Score=906.43 Aligned_cols=518 Identities=100% Similarity=1.461 Sum_probs=504.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |||||+|++|||+||+|+|+++|++++++|++++++++++|++..|.+.||+++++||++++++|+|||+.||+++|+|| T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCccccccccCChHHHHHHHHHHhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcCcE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNEP 160 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~~ 160 (518) |+|+|+|+|++.+..++++++++|++++++|+|+.+++++++.|+++|+++|||||++|+++|++|+|++|+|+|+||++ T Consensus 81 ~~e~~~i~v~~~~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~~v~ad~~~P~~~~g~~ 160 (518) T protein:vir:78 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNEP 160 (518) T ss_pred cCCCceEEecCccccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEECCeeEEEEEcCCeeEEEeecCcE Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccccee Q lcl|Aclame:pro 161 FRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSV 240 (518) Q Consensus 161 ~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (518) ++|+|++++..++++++||+||+|++++..+..+.+++|+|+|+||+++.+..++++.+++++.+..+..++++.++..+ T Consensus 161 ~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~~~~~e~~~~ 240 (518) T protein:vir:78 161 FRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSV 240 (518) T ss_pred EEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccccccccccccccccccccCccceee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccC Q lcl|Aclame:pro 241 SIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWS 320 (518) Q Consensus 241 ~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~ 320 (518) .||.++||++|+||+.+|+++++||||+|||++++++|++||++||+|+|||++|+++|+||+++|+++.++++.+..+. T Consensus 241 ~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~~~~~~ 320 (518) T protein:vir:78 241 SIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWS 320 (518) T ss_pred ccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHhCCceeeechhHhccCCCCCCCccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888899 Q ss_pred CCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHH Q lcl|Aclame:pro 321 MNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVR 400 (518) Q Consensus 321 ~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~ 400 (518) |+.++++|+++++.++.++++++.|+++||+||+++|+++++.+|++|+++||+||++||++++.+|||||++++++||+ T Consensus 321 fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~~~~~TATei~s~~~~~~~ 400 (518) T protein:vir:78 321 MNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVR 400 (518) T ss_pred cCCCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCcccccccHHHHHHHHHHHHH Confidence 99999999999998888888888999999999999999999999999999999999999998888999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHc Q lcl|Aclame:pro 401 KIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH 480 (518) Q Consensus 401 t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~ 480 (518) |+++|++.|+.+|+++++++++|++.+++.......+++++|+|+|+|++++|++++++++++++++|+||++++|+++| T Consensus 401 t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~~~v~aGimS~e~~i~~~~ 480 (518) T protein:vir:78 401 KIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH 480 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHhC Confidence 99999999999999999999999998877777777788899999999999999999999999999999999999999999 Q ss_pred CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 481 PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 481 ~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) |+|+||||++|++||++||+.+++++|+..++|+++|| T Consensus 481 ~~~~deea~~e~~ri~~E~~~~~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 481 PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) T ss_pred CCCCHHHHHHHHHHHHHHhcccCCCCCccccCCCCCCC Confidence 99999999999999999999999999999999999999 No 2 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=100.00 E-value=2.3e-122 Score=687.47 Aligned_cols=486 Identities=14% Similarity=0.077 Sum_probs=402.8 Q ss_pred chHHHHHHHHhcC-------------------CCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 5 SVMTRFIKGWLNG-------------------KPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 5 ~~~~~~~~~w~~g-------------------~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) |+|.+.||.|++. ..+..+.++|.+|+++|.++.+.++.. +.....++++++| T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~--------~~~~~~~~~~~~s 72 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYI--------NSQGKIQERDYMT 72 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccccc--------cccccccccceee Confidence 6666677776622 223456889999999999888765421 2335667788999 Q ss_pred CchHHHHHHHHHHHHcCCcceEEecccccc-----chHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGS-----KDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR 140 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~-----~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~ 140 (518) +|+|+.||+++|+|||+|+|+|+|++.+.. .++.+|++|++++++|+|+.+++++++.|+++||++||||||+++ T Consensus 73 l~~~~~i~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~ 152 (517) T protein:vir:98 73 LNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGE 152 (517) T ss_pred cCcHHHHHHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeCCe Confidence 999999999999999999999999865432 235679999999999999999999999999999999999999999 Q ss_pred EEEEEEcCCeeEEEEEc-CcEEEEEEEEE--EEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccc Q lcl|Aclame:pro 141 PSISVHSSSQFWIDFKN-NEPFRFNFFEE--IPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPIS 217 (518) Q Consensus 141 i~i~~v~ad~~~P~~~~-g~~~~~~f~~~--~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~ 217 (518) ++|++|+||+|+|+.+| +.+++|+|+.. ...+++..+||+||+|++++.. ...++|+|+|+||++...... +. T Consensus 153 ~~I~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~---~~~~~y~I~n~ly~s~~~~~l-G~ 228 (517) T protein:vir:98 153 IEFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTE---EGESLYVITNELYKSDNEGEI-GK 228 (517) T ss_pred eEEEEEcCCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCcee---ccCCcEEEEEEEEecCCCccc-cc Confidence 99999999999996544 56777776543 3345567799999999987642 234789999999998754422 12 Q ss_pred ccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 218 AERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT 297 (518) Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ 297 (518) .++ |+.+ |+++.++. +.+|..+|+|.|++|+.+|+++.+||||+|+|++++++|++||++||+|+|||++|++ T Consensus 229 ~v~----L~~~--~e~l~~~~-~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~ 301 (517) T protein:vir:98 229 RIP----LEEL--YEGMQEKT-YIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR 301 (517) T ss_pred ccc----cccc--ccCCCcce-eECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCc Confidence 222 3333 56776654 5578888888888999999999999999999999999999999999999999999999 Q ss_pred eeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 298 KIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPA 377 (518) Q Consensus 298 ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~ 377 (518) ||+||+++|+.+.++++......||.++++|+++.+. .++.+++++||+||+++|+++++.+|++|+++||||++ T Consensus 302 ~i~vp~~~l~~~~~~~g~~~~~~~d~~~~~y~~~~~~-----~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~ 376 (517) T protein:vir:98 302 TVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMG-----TDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVG 376 (517) T ss_pred ceecChhhhccccCCCCcccCCCCCcccceeeeccCC-----CCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCcc Confidence 9999999999998887777778899999999998753 23567999999999999999999999999999999999 Q ss_pred ccccCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHH Q lcl|Aclame:pro 378 TFNLGNR-EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNE 456 (518) Q Consensus 378 tf~~d~~-~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~ 456 (518) +||+++. .+|||||++++++||+|+++|++.|+.+|++++++|++++..+.. +++..+..++|+|+|+|++++|+++ T Consensus 377 t~~~~~~~~kTATEi~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~--~~~~~~~~~~v~v~f~D~i~~D~~~ 454 (517) T protein:vir:98 377 TFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKL--FGGEIPSAEHIGVDFDDGVFQDRSA 454 (517) T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCCCCcceEEEcCCCCCCCHHH Confidence 9999754 479999999999999999999999999999999999999877543 3444556788999999999999999 Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 457 LSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 457 ~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++++++++++|+||++++|+++| +++||||++|++||++|++.+++ .+.....-+.-.| T Consensus 455 ~~~~~~~~v~aG~ms~~~~i~~~~-g~~eeeA~~e~~~i~~E~~~~~~-~~~~~~~~~~~~g 514 (517) T protein:vir:98 455 LLRFYGQAKTFGFIPTVEAIQRIF-KVPKKTAEQWLEEIRKDQIELDP-VTISQRAQKRMFG 514 (517) T ss_pred HHHHHHHHHhcCCCCHHHHHHHhC-CCChHHHHHHHHHHHHhccccCC-CCccccccCCCCC Confidence 999999999999999999999987 59999999999999999986542 2221111111111 No 3 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=100.00 E-value=1.3e-122 Score=688.78 Aligned_cols=491 Identities=13% Similarity=0.077 Sum_probs=410.0 Q ss_pred CCcCchHHHHHH---HHhcCCC------------ChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 1 MGVWSVMTRFIK---GWLNGKP------------NGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 1 ~~~~~~~~~~~~---~w~~g~p------------~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) ||++.-|+++|+ .++.+.+ +.+++.+|.+|+++|.++++..+ +.+...++.+++++| T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~--------~~~~~~~~~~~~~~s 72 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQ--------YKNTDGDIKSRPMNH 72 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCccccc--------ccccCcchhccccee Confidence 999999999986 5655441 33567788888888887655432 123457778889999 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEE Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISV 145 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~ 145 (518) +|||+.||+++|+|||+|||+|+++ |++++++|++++++|+|+.+++++++.|+++||+||||||++++++|++ T Consensus 73 lnl~~~i~~~~A~lv~~e~~~i~v~------d~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~i~~ 146 (522) T protein:vir:47 73 LPIARTASKKIASLVYNEQATITTK------NEILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDGDKVRVAF 146 (522) T ss_pred cchHHHHHHHHhhhhcCCcceeecC------ChHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEcCCceEEEE Confidence 9999999999999999999999984 5788999999999999999999999999999999999999999999999 Q ss_pred EcCCeeEEEEEc-CcEEE-EEEEEEEEecCc-eEEEEEEEEeecccc----eeeeeeccceEEEEEEEeccCCccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFKN-NEPFR-FNFFEEIPTSNK-ADIYYLVESREIKQW----DKEGKKLSGGFVTYSVIKIDGDKTTPISA 218 (518) Q Consensus 146 v~ad~~~P~~~~-g~~~~-~~f~~~~~~~~~-~~~y~~lE~he~~~~----~~~~~~~~~~~I~n~ly~~~~~~~v~~~~ 218 (518) |+||+|+|++++ +..++ ++|.++++..++ ..+||+||+|+|... ......+++|+|+|+||++.....++ T Consensus 147 v~ad~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG--- 223 (522) T protein:vir:47 147 IQAPVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLG--- 223 (522) T ss_pred EcCCceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccC--- Confidence 999999998665 33454 455555655554 446889999998543 23445678899999999987543322 Q ss_pred cccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 219 ERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTK 298 (518) Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~r 298 (518) ..+.++.++.|+++.+++++ +|..+|+|+|++|+.+|+++.+||||+|+|++++++||+||++||+|+||||+|++| T Consensus 224 --~~v~l~~~~e~~~l~~~~~~-~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~ 300 (522) T protein:vir:47 224 --QRVNLSELDKYKNLEPVTVF-ENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRR 300 (522) T ss_pred --ccccccccccccCCCCceEe-CCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccce Confidence 12446677788898887655 566777777888899999999999999999999999999999999999999999999 Q ss_pred eeechhhhccCCCCCccc--cccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 299 IAASERMFRKKVNKSTDK--EEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNP 376 (518) Q Consensus 299 i~v~~~~l~~~~~~~~~~--~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~ 376 (518) |+||++|+++..++.++. ....|+.++++|+++....+ +...++++||+||+++|.++++.+|++|+++||||+ T Consensus 301 i~v~~~~l~~~~~~~~g~~~~~~~fd~~~~~f~~~~~~~~----~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~ 376 (522) T protein:vir:47 301 VIVPEHLTQRQYQRPDGTIDFRPRFDVEQNVYMQIGGSSM----DAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSS 376 (522) T ss_pred eecchHHhccCCCCCCcccccccccCcccceEeecCCCCC----CCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCc Confidence 999999999987765543 45678999999999875432 334699999999999999999999999999999999 Q ss_pred cccccCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHH Q lcl|Aclame:pro 377 ATFNLGN-REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLN 455 (518) Q Consensus 377 ~tf~~d~-~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~ 455 (518) |+|++++ +.+|||||++++++||+|+++|++.|+.+|++|+++|++|++.+.. +++..+..++|+|+|+|++++|++ T Consensus 377 ~tf~~~~~~~kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~--~~~~~~~~~~i~v~f~D~i~~D~~ 454 (522) T protein:vir:47 377 GMFTFDGQGMKTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGV--YSGEIPELDDISVNLDDGVFTDRH 454 (522) T ss_pred cccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--ccCCCCCcceeEEEcCCCCCCCHH Confidence 9999975 4589999999999999999999999999999999999999876533 345566678999999999999999 Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcC---CCCC Q lcl|Aclame:pro 456 ELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGME---TKGG 518 (518) Q Consensus 456 ~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~---~~gG 518 (518) ++++++++++++|+||++++|+++ ++|+||+|++|++||++|++++.+++++.+++-+ .+|| T Consensus 455 ~~~~~~~~~v~aG~~s~e~~i~~~-~g~~eeea~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~~d 519 (522) T protein:vir:47 455 AELDYWAKMVAAGFSTKKRAIGKT-LNISGVEAEKELNAINSELLPMNDAELAIYGMHDQNEEKAD 519 (522) T ss_pred HHHHHHHHHHhcCCCCHHHHHHhc-CCCChHHHHHHHHHHHHhhccCCCCCCCCCCCCCcccccCC Confidence 999999999999999999999875 5799999999999999999987766666554322 2222 No 4 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=100.00 E-value=5.2e-120 Score=674.52 Aligned_cols=477 Identities=15% Similarity=0.169 Sum_probs=403.9 Q ss_pred CCcCchHHHHHHHHhcC----------------CCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcccccee Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNG----------------KPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLM 64 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g----------------~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 64 (518) ||++..|+++|+.|..- ..+..++++|.+|+++|.++.+.+++. |. ......++++ T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~~~l~~~------~~--~~~~~~~~~~ 72 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDFKQVTHK------NS--YGDTQKHELQ 72 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCCcccccc------cc--CCCcccccee Confidence 99999999988887531 122346777888888888876644321 11 2334566789 Q ss_pred cCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEE Q lcl|Aclame:pro 65 NSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSIS 144 (518) Q Consensus 65 ~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~ 144 (518) |+|||+.||+++|+|||+|||+|+++ ++.++++|++++++|+|+.+++++++.|+++|+++||||||+++++|+ T Consensus 73 slnl~~~i~~~~A~ll~~e~~~i~~~------d~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D~~~~~i~ 146 (505) T protein:vir:79 73 SVNVTKLASAKLASLIFNEQCQVTVS------DETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVDSGKIKLA 146 (505) T ss_pred ecchHHHHHHHHHhhhcCCCceeecC------ChHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEeCCceEEE Confidence 99999999999999999999999984 567899999999999999999999999999999999999999999999 Q ss_pred EEcCCeeEEEEE-cCcEEEEEEEEEEEecC--ceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccc Q lcl|Aclame:pro 145 VHSSSQFWIDFK-NNEPFRFNFFEEIPTSN--KADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERL 221 (518) Q Consensus 145 ~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~--~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~ 221 (518) +++|++|+|+++ +++.++|+|+.+++..+ +.++||+||+|++. +++|+|+|+||+++.....+ . T Consensus 147 ~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~--------~~~~~I~n~ly~~~~~~~lG-----~ 213 (505) T protein:vir:79 147 WATADQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWD--------HGDYVITNELYRSEAAETVG-----I 213 (505) T ss_pred EEcCCeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEec--------CceEEEEEEEEecCCCCccC-----c Confidence 999999999854 57888999988766533 45689999999854 46899999999987654332 2 Q ss_pred ccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeee Q lcl|Aclame:pro 222 PEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAA 301 (518) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v 301 (518) .+.++.++.|+++.++..+ +|.++|+|.|+||+.+||++++||||+|+|++++++||+||++||+|+|||++|+++|+| T Consensus 214 ~v~l~~~~~~~~l~~~~~~-~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v 292 (505) T protein:vir:79 214 NVPLNSLEQYEGLEPQVKI-TGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIV 292 (505) T ss_pred ccchhhcccccccCcceee-cCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceee Confidence 2446667778888876654 678888888889999999999999999999999999999999999999999999999999 Q ss_pred chhhhccCCCCCccc---cccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 302 SERMFRKKVNKSTDK---EEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPAT 378 (518) Q Consensus 302 ~~~~l~~~~~~~~~~---~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~t 378 (518) |++|++.++++++.. ....|+.+.++|+.+.+. +++..++++||+||+++|+++++.+|++|+++||||+++ T Consensus 293 ~~~~l~~~~~~~~~~~~~~~~~fd~~~~~y~~~~~~-----~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~ 367 (505) T protein:vir:79 293 PAEWLKTGSSYGGQASETHPPMFDPDETVYQAMYGD-----ASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGT 367 (505) T ss_pred chHHhcccCCCCcccccccccCCCccceeeeeccCC-----CCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhh Confidence 999999988776543 345689999999987642 334679999999999999999999999999999999999 Q ss_pred cccCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC----CCcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 379 FNLGNR-EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEK----AIMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 379 f~~d~~-~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~----~~~~~~~~v~v~f~D~i~~d 453 (518) ||+++. .+|||||++++++||+|+++|++.|+.+|++|+++|++++..+.....+ +..+.+++|+|+|+|++++| T Consensus 368 ~~~~~~~~~TAtei~s~~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d 447 (505) T protein:vir:79 368 FTTSPSGIQTATEVVTNNSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVD 447 (505) T ss_pred cCCCccccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCC Confidence 999754 4799999999999999999999999999999999999999877643322 34566789999999999999 Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++++++.+++++++|+||+++++++ ||+++||+|++|++||++|++..+ |++ +..|| T Consensus 448 ~~~~~~~~~~~v~~Gi~s~e~~l~~-~~~~~eeea~~el~ri~~E~~~~~-p~~------~~~gg 504 (505) T protein:vir:79 448 QESKRAADLQAVQAQVMPKKQFLMR-NYGLDEEEADEWLAQIDAENSTAE-PEF------NQFGG 504 (505) T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHh-cCCCChHHHHHHHHHHHHhccccC-CCc------hhccC Confidence 9999999999999999999999976 788999999999999999997644 333 44444 No 5 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=100.00 E-value=2e-117 Score=660.37 Aligned_cols=480 Identities=14% Similarity=0.110 Sum_probs=397.7 Q ss_pred CCcCchHHHHHHHHhcC----------------CCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC-CCccccce Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNG----------------KPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY-VPTVHDKL 63 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g----------------~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~ 63 (518) ||+.--|+++|+.+.+- .-+..++++|.+|+++|.+..+. +|.+.. .....+++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~---------~~~~~~~~~~~~~~~ 71 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQY---------IHYQASDGIKKKRLK 71 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcc---------cccccCCCCccccce Confidence 55444444444332210 11335677888888888877543 344432 33345567 Q ss_pred ecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEE Q lcl|Aclame:pro 64 MNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSI 143 (518) Q Consensus 64 ~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i 143 (518) +|+|+|+.||+++|+|||+|||+|++++ ++.++++|++++++|+|+.+++++++.|+++|+++||||||+++++| T Consensus 72 ~sln~~~~i~~~~A~lv~~e~~~i~v~~-----~~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i 146 (508) T protein:vir:15 72 NTINMAKTAARRIASVVFNEKAEIHVKD-----NNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGNHIKI 146 (508) T ss_pred eecchHHHHHHHHHhhhhCCCceEEeCC-----chHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeCCeeEE Confidence 8999999999999999999999999863 45678899999999999999999999999999999999999999999 Q ss_pred EEEcCCeeEEE-EEcCcEEEEEEEEEEEec--CceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccc Q lcl|Aclame:pro 144 SVHSSSQFWID-FKNNEPFRFNFFEEIPTS--NKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAER 220 (518) Q Consensus 144 ~~v~ad~~~P~-~~~g~~~~~~f~~~~~~~--~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~ 220 (518) ++|+|++|+|+ |.++++++|+|+.+.... +++++||+||+|++. ..++|+|+|++|++++....+ T Consensus 147 ~~v~ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~-------~~~~~~I~n~ly~~~~~~~lG----- 214 (508) T protein:vir:15 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQ-------DNGSYQITNELYKSDSPDIVG----- 214 (508) T ss_pred EEEcCCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEe-------cCcceEEEEEEEecCCchhcC----- Confidence 99999999996 566889999999988764 456799999999864 346899999999987643321 Q ss_pred cccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceee Q lcl|Aclame:pro 221 LPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIA 300 (518) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~ 300 (518) ..+.++.++.|+++.++. ..+|..+|+|.|+||+.+|+++.+||||+|+|++++++|++||++||+|+|||++|++||+ T Consensus 215 ~~v~l~~~~e~~~l~~~~-~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~ 293 (508) T protein:vir:15 215 NQVPLSTLPVYKELAPQV-TISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIA 293 (508) T ss_pred cccchhhcccccCCCcce-EecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhccccee Confidence 224566778888887764 4567878888888999999999999999999999999999999999999999999999999 Q ss_pred echhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 301 ASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFN 380 (518) Q Consensus 301 v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~ 380 (518) ||+++++.++++ .+.|+.++++|+.+.+.. +++..|+++||+||+++|.++++.+|++|+++||+|+++|| T Consensus 294 v~~~~l~~d~~~-----~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~ 364 (508) T protein:vir:15 294 VQPGMLRFDDEH-----KPTFDTEQNVYVGVLSDD----NNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFS 364 (508) T ss_pred echHHhcCCCCC-----ccccCCCCeeEEeccCCC----CCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcc Confidence 999999876553 246899999999887543 33456999999999999999999999999999999999999 Q ss_pred cCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC------CcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 381 LGNR-EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKA------IMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 381 ~d~~-~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~------~~~~~~~v~v~f~D~i~~d 453 (518) ++++ .+|||||++++++||+|+++|++.|+.+|++|+++|++++..++....+. ....+++|+|+|+|++++| T Consensus 365 ~~~~~~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d 444 (508) T protein:vir:15 365 YSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVN 444 (508) T ss_pred cccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCC Confidence 9764 47999999999999999999999999999999999999988765443332 2355788999999999999 Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++++++.+++++++|+||++++|++ +|+|+||||++|++||++|++..+++++ .++..++..| T Consensus 445 ~~~~~~~~~~~v~aGi~s~e~~i~~-~~g~~deea~~el~ri~~E~~~~~~~~~-~~~~~~g~~g 507 (508) T protein:vir:15 445 KDKQLEEDAKVLAIGALSKQTFLQR-NYGMTDEQAAEELAKIQSEAPTDTFEGG-RSAILNGGDG 507 (508) T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHh-cCCCChHHHHHHHHHHHHhccccCcccc-ccccCCCCCC Confidence 9999999999999999999999976 6889999999999999999987655544 2333444444 No 6 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=100.00 E-value=7.1e-114 Score=640.90 Aligned_cols=475 Identities=13% Similarity=0.079 Sum_probs=383.6 Q ss_pred CCcCchHHHHH-HHHhc--------------CCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 1 MGVWSVMTRFI-KGWLN--------------GKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 1 ~~~~~~~~~~~-~~w~~--------------g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) ||+..-|+++| |.++. -..+..++++|.+|+++|.++++.. .+|+. .++...++++| T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~-------~~~~~-~~~~~~~~~~s 72 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSV-------LYLNT-DGETKKRDLNH 72 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCc-------ccccC-CCCcccCceee Confidence 55444444444 22211 1123345677888888887764321 23332 23445677889 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEE Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISV 145 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~ 145 (518) +|+|+.||+++|+|||+|||+|+++ +++++++|++++++|+|+.+++++++.|+++|+++||||||+++|+|++ T Consensus 73 lnl~~~i~~~~A~lv~~e~~~i~~~------d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~ 146 (500) T protein:vir:30 73 LPIARTAAKKIASLVFNEQAEIKVD------DDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAF 146 (500) T ss_pred cchHHHHHHHHhhhhcCCcceEecC------ChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEE Confidence 9999999999999999999999984 5788999999999999999999999999999999999999999999999 Q ss_pred EcCCeeEEEEEc-CcEEEEEEEEEEE--ecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFKN-NEPFRFNFFEEIP--TSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLP 222 (518) Q Consensus 146 v~ad~~~P~~~~-g~~~~~~f~~~~~--~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~ 222 (518) ++|++|+|++++ ++.+.++|+.+.. ..++..+||+||+|+|+. ..+|+|+|++|+++..... +..++ T Consensus 147 v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~-------~~~~~I~n~ly~~~~~~~l-G~~v~-- 216 (500) T protein:vir:30 147 VQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQS-------SDDYVISNELYRSDDKAKV-GSRVP-- 216 (500) T ss_pred EcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeC-------CceeEEEEEEEeccccccc-Ccccc-- Confidence 999999997554 5677777665433 234567899999998643 2469999999998754322 12222 Q ss_pred cccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeec Q lcl|Aclame:pro 223 EQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAAS 302 (518) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~ 302 (518) ++.+ |+++.++. ..+|..+|+|+|++++.+|+++.+||||+|+|++++++|++||++||+|+|||++|+++|+|| T Consensus 217 --l~~~--~~~l~~~~-~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~ 291 (500) T protein:vir:30 217 --LSEV--YKDLKDEA-KVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVP 291 (500) T ss_pred --cccc--cCCcCcce-EeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeec Confidence 2222 56666654 456777788888888999999999999999999999999999999999999999999999999 Q ss_pred hhhhccCCCCCcc--ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 303 ERMFRKKVNKSTD--KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFN 380 (518) Q Consensus 303 ~~~l~~~~~~~~~--~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~ 380 (518) ++|++.+.++.++ .+.+.|+.++++|+.+.+. .+++..++++||+||+++|.++++.+|++++++||||+|+|| T Consensus 292 ~~~l~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~----~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~ 367 (500) T protein:vir:30 292 ESLTALTVRTTDGDVVPRPRFESDQNVYIRMGGR----DLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFS 367 (500) T ss_pred hHHhcccCCCCCccccCCcccCCCcceEEEcCCC----CCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccc Confidence 9999988766543 3567789999999987653 234567999999999999999999999999999999999999 Q ss_pred cCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 381 LGN-REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 381 ~d~-~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) +++ +.+|||||++++++||+|+++|++.|+.+|++|+++|++++..+.. .++..+..++|+|+|+|++++|++++++ T Consensus 368 ~~~~g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~--~~~~~~~~~~v~v~f~d~i~~d~~~~~~ 445 (500) T protein:vir:30 368 FDGKSMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDL--YQSEVPSMDNISISLDDGVFTDRDAELD 445 (500) T ss_pred cCcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCCCCcceEEEeCCCCCCCHHHHHH Confidence 975 4579999999999999999999999999999999999999876532 3444556678999999999999999999 Q ss_pred HHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 460 TLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++++++++|+||++++|+++| +++||||++|++||++|+.... +.|+..+| T Consensus 446 ~~~~~v~aGi~s~~~~i~~~~-g~~eeea~~~l~~i~~E~~~~~-------~~~~~~~~ 496 (500) T protein:vir:30 446 YWIKVVNAGFGTREMAIQKVL-NVTEEKAQEIAAEINTGIVDEI-------NQQRTDTH 496 (500) T ss_pred HHHHHHHcCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHhccccC-------CCCCcccc Confidence 999999999999999998865 7999999999999999975321 22333333 No 7 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=100.00 E-value=7.1e-114 Score=640.90 Aligned_cols=475 Identities=13% Similarity=0.079 Sum_probs=383.6 Q ss_pred CCcCchHHHHH-HHHhc--------------CCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 1 MGVWSVMTRFI-KGWLN--------------GKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 1 ~~~~~~~~~~~-~~w~~--------------g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) ||+..-|+++| |.++. -..+..++++|.+|+++|.++++.. .+|+. .++...++++| T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~-------~~~~~-~~~~~~~~~~s 72 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSV-------LYLNT-DGETKKRDLNH 72 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCc-------ccccC-CCCcccCceee Confidence 55444444444 22211 1123345677888888887764321 23332 23445677889 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEE Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISV 145 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~ 145 (518) +|+|+.||+++|+|||+|||+|+++ +++++++|++++++|+|+.+++++++.|+++|+++||||||+++|+|++ T Consensus 73 lnl~~~i~~~~A~lv~~e~~~i~~~------d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~ 146 (500) T protein:vir:98 73 LPIARTAAKKIASLVFNEQAEIKVD------DDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAF 146 (500) T ss_pred cchHHHHHHHHhhhhcCCcceEecC------ChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEE Confidence 9999999999999999999999984 5788999999999999999999999999999999999999999999999 Q ss_pred EcCCeeEEEEEc-CcEEEEEEEEEEE--ecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFKN-NEPFRFNFFEEIP--TSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLP 222 (518) Q Consensus 146 v~ad~~~P~~~~-g~~~~~~f~~~~~--~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~ 222 (518) ++|++|+|++++ ++.+.++|+.+.. ..++..+||+||+|+|+. ..+|+|+|++|+++..... +..++ T Consensus 147 v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~-------~~~~~I~n~ly~~~~~~~l-G~~v~-- 216 (500) T protein:vir:98 147 VQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQS-------SDDYVISNELYRSDDKAKV-GSRVP-- 216 (500) T ss_pred EcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeC-------CceeEEEEEEEeccccccc-Ccccc-- Confidence 999999997554 5677777665433 234567899999998643 2469999999998754322 12222 Q ss_pred cccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeec Q lcl|Aclame:pro 223 EQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAAS 302 (518) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~ 302 (518) ++.+ |+++.++. ..+|..+|+|+|++++.+|+++.+||||+|+|++++++|++||++||+|+|||++|+++|+|| T Consensus 217 --l~~~--~~~l~~~~-~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~ 291 (500) T protein:vir:98 217 --LSEV--YKDLKDEA-KVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVP 291 (500) T ss_pred --cccc--cCCcCcce-EeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeec Confidence 2222 56666654 456777788888888999999999999999999999999999999999999999999999999 Q ss_pred hhhhccCCCCCcc--ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 303 ERMFRKKVNKSTD--KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFN 380 (518) Q Consensus 303 ~~~l~~~~~~~~~--~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~ 380 (518) ++|++.+.++.++ .+.+.|+.++++|+.+.+. .+++..++++||+||+++|.++++.+|++++++||||+|+|| T Consensus 292 ~~~l~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~----~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~ 367 (500) T protein:vir:98 292 ESLTALTVRTTDGDVVPRPRFESDQNVYIRMGGR----DLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFS 367 (500) T ss_pred hHHhcccCCCCCccccCCcccCCCcceEEEcCCC----CCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccc Confidence 9999988766543 3567789999999987653 234567999999999999999999999999999999999999 Q ss_pred cCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 381 LGN-REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 381 ~d~-~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) +++ +.+|||||++++++||+|+++|++.|+.+|++|+++|++++..+.. .++..+..++|+|+|+|++++|++++++ T Consensus 368 ~~~~g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~--~~~~~~~~~~v~v~f~d~i~~d~~~~~~ 445 (500) T protein:vir:98 368 FDGKSMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDL--YQSEVPSMDNISISLDDGVFTDRDAELD 445 (500) T ss_pred cCcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCCCCcceEEEeCCCCCCCHHHHHH Confidence 975 4579999999999999999999999999999999999999876532 3444556678999999999999999999 Q ss_pred HHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 460 TLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++++++++|+||++++|+++| +++||||++|++||++|+.... +.|+..+| T Consensus 446 ~~~~~v~aGi~s~~~~i~~~~-g~~eeea~~~l~~i~~E~~~~~-------~~~~~~~~ 496 (500) T protein:vir:98 446 YWIKVVNAGFGTREMAIQKVL-NVTEEKAQEIAAEINTGIVDEI-------NQQRTDTH 496 (500) T ss_pred HHHHHHHcCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHhccccC-------CCCCcccc Confidence 999999999999999998865 7999999999999999975321 22333333 No 8 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=100.00 E-value=1.7e-109 Score=616.87 Aligned_cols=480 Identities=15% Similarity=0.169 Sum_probs=398.4 Q ss_pred CCcCchHHHHH-HHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFI-KGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~-~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) ||.-+.|...| ..+..- +.++.++|.+|+++|.++...|++..+ +...++..++++|+|+|+.||+++|+| T Consensus 16 ~~~~~~~~~~~~~~~i~~--~~~~~~~i~~~~~~Y~g~~~~~~~~~~------~~~~~~~~~~~~s~n~~~~iv~~~a~~ 87 (499) T protein:vir:80 16 MGLLKSLKDVTDHKKVNA--NDEDYKYIDMWKRLYQGNYAEWHNLNY------EHNGNPVNRRQLSMNLPKVTAKYMSKL 87 (499) T ss_pred hccccchhhhhcCCCCcC--CHHHHHHHHHHHHHhcCCcchhhcccc------ccCCCccccceeecchHHHHHHHHHHh Confidence 55555555555 233321 235778899999999999888876543 223456678899999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEE-c Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFK-N 157 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~-~ 157 (518) ||+||++|+++ ++.++++|++++++|+|..++.++++.|+++|++++|||+| +|+|+|++++|++++|+|+ + T Consensus 88 l~~ep~~i~~~------d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~a~~~~Pi~~d~ 161 (499) T protein:vir:80 88 LFNEKVKINID------DETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCMYPLSNDS 161 (499) T ss_pred hhCCcceEeeC------CHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEEEEEEcCCceEEEEecC Confidence 99999999984 57889999999999999999999999999999999999998 6899999999999999865 4 Q ss_pred CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccc Q lcl|Aclame:pro 158 NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLN 237 (518) Q Consensus 158 g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (518) |++++|+|+.....++ .+|++||+|++... .++.|+|+|.+|+++.+...+ ..++ +.. .++++++. T Consensus 162 ~~~~~~~f~~~~~~~~--~~y~~lE~h~~~~~-----~~~~y~I~n~~~~~~~~~~lG-~~v~----l~~--~~~~~~~~ 227 (499) T protein:vir:80 162 ENVDECLIANSFHKNN--KYYKLLEWNEWKGE-----KEEVYTVTTELYQSDDPNELG-GKVS----LKL--LFNDIEPV 227 (499) T ss_pred CCeEEEEEEEEEeecC--eEEEEEEEEEeccc-----ceeeEEEEEEEEeccCccccC-cccc----hhh--hccCcCCc Confidence 7899999999887765 48999999998653 345799999999987654332 2222 222 25677666 Q ss_pred ceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcccc Q lcl|Aclame:pro 238 HSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKE 317 (518) Q Consensus 238 ~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~ 317 (518) ..+ +|..+|+|+|++|+.+|+++.+||||+|+|++++++||+||++||+|+|||++|+.+|+||++|++.+.++.+. . T Consensus 228 ~~~-~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~g~-~ 305 (499) T protein:vir:80 228 VPL-PSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGS-T 305 (499) T ss_pred eee-cCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhcccceecchhhhhccCCCCCC-c Confidence 554 45666666777888899999999999999999999999999999999999999999999999999988776554 3 Q ss_pred ccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC-ccchHHHHHHHHH Q lcl|Aclame:pro 318 EWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN-REVKATEIWSLQD 396 (518) Q Consensus 318 ~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~-~~~TAtEi~s~~~ 396 (518) ...|+.++++|..+.+..+ +++..++.++|+||+++|+++++.+|++|+++||+|+++||+++ +.+|||||+++++ T Consensus 306 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~ 382 (499) T protein:vir:80 306 TQYFDSTDEAFFLYQGEQD---DNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKS 382 (499) T ss_pred ccCCCcccceeeEeeccCC---CCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhHHHHHHHHH Confidence 4578999999998876432 33457999999999999999999999999999999999999875 4579999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHH Q lcl|Aclame:pro 397 ATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKV 476 (518) Q Consensus 397 ~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v 476 (518) +|++|+++|++.|+.+|++|+++|++++..+... .+..+..++|+|+|+|++++|++++++++++++++|+||++++| T Consensus 383 ~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~--~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l 460 (499) T protein:vir:80 383 ETYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAY--DGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIAL 460 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHH Confidence 9999999999999999999999999998766433 33345567999999999999999999999999999999999999 Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 477 KLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 477 ~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) ++ +++.+|++|++|++||++|++.+. ++++..|.++..- T Consensus 461 ~~-~~~~~d~ea~~el~~i~~E~~~~~-~~~d~~g~~ge~e 499 (499) T protein:vir:80 461 QR-AWNITEAEADEWAEMLAKEKQAEI-PNNDMTGIFGEEE 499 (499) T ss_pred hh-cCCCChHHHHHHHHHHHHHhhcCC-CCCCccccCCCCC Confidence 77 678899999999999999998754 4444344343333 No 9 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=100.00 E-value=3.9e-102 Score=576.53 Aligned_cols=477 Identities=14% Similarity=0.156 Sum_probs=400.3 Q ss_pred CCcCchHHHHH-HHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFI-KGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~-~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) ||.-+.++.+| +.|+.-.+ .++++|.+|+++|.+....|++..+ ....++..++++|+|+|+.||+++|+| T Consensus 16 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~yy~g~~~~~~~~~~------~~~~~~~~~~~~~~n~~k~i~~~~a~~ 87 (496) T protein:vir:38 16 MGLLKALKDVKDHKKVNAND--EDYKYIDMWKRLYQGHYAEWHNLNY------EHNGNPVNRRQLSMNLPKVTAKYMSKL 87 (496) T ss_pred hccchhhHHHHhcCCCcCCH--HHHHHHHHHHHHhcCCCchhhcchh------ccCCCccccceeecchHHHHHHHHhhh Confidence 88888888888 57776433 6788999999999998888876533 223556778899999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEc- Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN- 157 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~- 157 (518) ||++||+|+++ ++..+++|++++++|+|..++.++++.|+++|+++++||+| +++++|++++|++++|++++ T Consensus 88 l~~~p~~i~~~------d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~~~~~~P~~~~~ 161 (496) T protein:vir:38 88 LFNEKVKINID------DKAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCMYPLSNDS 161 (496) T ss_pred hhCCcceEeeC------ChHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEEEEEEcccceEEEEecC Confidence 99999999874 56789999999999999999999999999999999999998 58999999999999998775 Q ss_pred CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccc Q lcl|Aclame:pro 158 NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLN 237 (518) Q Consensus 158 g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (518) +++++++|++.....+ .+|++||+|++. +++|+|+|++|++.++...+ ..+++ .. .++++.+. T Consensus 162 ~~~~~~~f~~~~~~~~--~~y~~le~h~~~--------~~~~~I~~~~y~~~~~~~~g-~~v~~----~~--~~~~~~~~ 224 (496) T protein:vir:38 162 ENVDECVIANSFHKNN--KYYTLLEWNEWQ--------GDVYTVTTELYQSDDPNELG-TKVSL----TL--LFDDIEPV 224 (496) T ss_pred CcEEEEEEEEEEEeCC--eEEEEEEEEEEe--------CceEEEEEEEEecCCccccC-ccccc----cc--cccccccc Confidence 6788999999887654 489999999854 46899999999987654331 22222 22 24555555 Q ss_pred ceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcccc Q lcl|Aclame:pro 238 HSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKE 317 (518) Q Consensus 238 ~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~ 317 (518) ..+ +|..+|+|+|++|+.+|+++.+||+|+|+|++++++||+||++||+++|+|++|+++|+||+++++...++.+.. T Consensus 225 ~~~-~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~v~~~~l~~~~~~~g~~- 302 (496) T protein:vir:38 225 VPL-PDFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGST- 302 (496) T ss_pred eee-cCCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccceecchHHhhccCCCCCcc- Confidence 444 566667777888888999999999999999999999999999999999999999999999999999887776554 Q ss_pred ccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC-ccchHHHHHHHHH Q lcl|Aclame:pro 318 EWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN-REVKATEIWSLQD 396 (518) Q Consensus 318 ~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~-~~~TAtEi~s~~~ 396 (518) ...|+.+.++|..+.+.. .++...++.++|+||+++|.+.++.+++++++.||+|+++||+++ +.+|||||+++++ T Consensus 303 ~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~ 379 (496) T protein:vir:38 303 TQYFDSTDEAFFLYQGDQ---DDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKS 379 (496) T ss_pred ccCCCCccceEEEeecCC---CcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHH Confidence 456888889988876543 233467999999999999999999999999999999999999875 4579999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHH Q lcl|Aclame:pro 397 ATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKV 476 (518) Q Consensus 397 ~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v 476 (518) +|++++++|++.++.+|+++++++++++..+.. .++......+|+|+|+|+++.|+++.++.+++++++|+||++++| T Consensus 380 ~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~--~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l 457 (496) T protein:vir:38 380 ETYQTKNSHSQLIEQGIKEMIVSILEVGKFIEA--YSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIAL 457 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHH Confidence 999999999999999999999999999876543 234455677899999999999999999999999999999999999 Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 477 KLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 477 ~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) ++ +|+++|++|++|++||++|++...+ +++..+-++.+. T Consensus 458 ~~-~~~~~d~ea~~el~ri~~E~~~~~~-~~d~~~~~~~~e 496 (496) T protein:vir:38 458 QR-AWNITEAEADEWAEMLAKEKQAEMP-NNDMNGIFGEEE 496 (496) T ss_pred Hh-cCCCChHHHHHHHHHHHHhhhccCc-cccccCCCCCCC Confidence 76 6889999999999999999986543 444322222222 No 10 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=100.00 E-value=3.1e-47 Score=275.57 Aligned_cols=451 Identities=13% Similarity=0.063 Sum_probs=282.0 Q ss_pred CCcCch----HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC-CCccccceecCchHHHHHHH Q lcl|Aclame:pro 1 MGVWSV----MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY-VPTVHDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~~~~~----~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~l~~~i~~~ 75 (518) -.+... |..+|+.|. ..++.+..+.|.+...-.++.......++... .......++++|+++.|++. T Consensus 24 ~~~~~~~~~~i~~~i~~~~--------~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~ 95 (503) T protein:vir:59 24 KEIAEPDTTMIQKLIDEHN--------PEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKTNNRTSHAWHKLFVDQ 95 (503) T ss_pred hhccchhHHHHHHHHHhhc--------HHHHHHHHHHhccccchhhccchhcccccccccccccccceeecchHHHHHHH Confidence 111111 222222221 11222222333333211111111111111111 22334567899999999999 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWID 154 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~ 154 (518) .|+++|++++++++ +++.+++.|+.++ +|+|...+.+++..++..|.+++++|++ +|++++.+++|.+++|+ T Consensus 96 ~~~yl~g~~~~~~~------~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~~p~~~~~i 168 (503) T protein:vir:59 96 KTQYLVGEPVTFTS------DNKTLLEYVNELA-DDDFDDILNETVKNMSNKGIEYWHPFVDEEGEFDYVIFPAEEMIVV 168 (503) T ss_pred HHhhhhcCCeeecc------CcHHHHHHHHHHH-hcCHHHHHHHHHHHHhhCCeEEEEEeecCCCceEEEEEccceeEEE Confidence 99999999998874 4567788888766 5889999999999999999999999997 57899999999999999 Q ss_pred EEcC---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 155 FKNN---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 155 ~~~g---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) |+++ ++..++.+......+. ..+++.|.|... .|.+ |................... T Consensus 169 ~d~~~~~~~~~~ir~~~~~~~~~-~~~~~~evy~~~------------~i~~--~~~~~~~~~~~~~~~~~~~~------ 227 (503) T protein:vir:59 169 YKDNTRRDILFALRYYSYKGIMG-EETQKAELYTDT------------HVYY--YEKIDGVYQMDYSYGENNPR------ 227 (503) T ss_pred EeCCCCCceEEEEEEEEEecCCC-ceEEEEEEEeCC------------cEEE--EEEcCCcccccccccccccc------ Confidence 9874 3444443333322332 334566666533 3433 22222111110000000000 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCC Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVN 311 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~ 311 (518) ..+. ....+++...++++.++| ++.|.|+|++++++||++|.++|+++++++....++.|...+- T Consensus 228 ~~~~-~~~~~~~~~~vPiv~~~n---------n~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~~----- 292 (503) T protein:vir:59 228 PHMT-KGGQAIGWGRVPIIPFKN---------NEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYD----- 292 (503) T ss_pred ccee-ecceeccCCccceEEecC---------CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecCC----- Confidence 0000 111234444333333332 3469999999999999999999999999999888888865431 Q ss_pred CCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHH Q lcl|Aclame:pro 312 KSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEI 391 (518) Q Consensus 312 ~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi 391 (518) +.... .+......+..+.. . + +..++.++++++.+++...++.+.+.|...++.+.-.++..++..||.++ T Consensus 293 ~~~~~---~~~~~~~~~~~~~~--~--~--~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~~~Sg~Ai 363 (503) T protein:vir:59 293 GENPK---EFTANLRYHSVIKV--S--G--DGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETIGGGATGPAL 363 (503) T ss_pred ccccc---hhhhhhhcccceec--c--C--CCcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcccccccccHHHH Confidence 11000 11111111222211 1 1 12367889999999999999999988888876654344333456799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMS 471 (518) Q Consensus 392 ~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S 471 (518) ++..+.+..++.++++.++.+|+++++.|+.+.+... ........+|+|.|++.++.|..+.++.+++++++|+|| T Consensus 364 ~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~----~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS 439 (503) T protein:vir:59 364 ENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTG----KGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMS 439 (503) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCc Confidence 9999999999999999999999999999988765321 222233346999999999999999999999999999999 Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhcc-----------------CcCCCCC Q lcl|Aclame:pro 472 VEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIG-----------------GMETKGG 518 (518) Q Consensus 472 ~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~-----------------~~~~~gG 518 (518) .++++++ +|..++ +++|++||++|+.......+...+ .-++.-| T Consensus 440 ~et~l~~-l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 500 (503) T protein:vir:59 440 KETAVAR-NPFVQD--PEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAG 500 (503) T ss_pred hHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCCCCCCcccCCCCC Confidence 9999976 565544 568899999887533211110000 0000111 No 11 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=100.00 E-value=1.1e-47 Score=277.94 Aligned_cols=450 Identities=15% Similarity=0.077 Sum_probs=289.9 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC---CCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY---VPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~l~~~i~~~~A 77 (518) +.-+..+...|+... +.....++.+..+.|.+.+.-..+. ...|+... .......++++|+++.|++..| T Consensus 18 ~~~~~~~~~~i~~~~----~~~~~~~~~~~~~yy~g~~~i~~~~---~~~~~~~~~~~~~~~~~~ki~~~~~~~Ivd~~~ 90 (479) T protein:vir:79 18 KESTINLVKVIEHYI----LKHRPEKYKQGEEYYYGNTDVNNKR---RYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKV 90 (479) T ss_pred cCChhHHHHHHHHHH----hhhhHHHHHHHHHHhccCCcccccc---cccccccccccccccCcceeecchHHHHHHHHH Confidence 333333444443332 1122334445555555554322211 12222211 2234456899999999999999 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEE Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFK 156 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~ 156 (518) +++|++|++++. +++.+++.++.++ +|+|...+.+++..+++.|.+++.+|++ +|++++.+++|..++|+|+ T Consensus 91 ~~l~g~p~~~~~------~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~d 163 (479) T protein:vir:79 91 GYSVGNPIVFNA------DDDNLTKLLNDLL-GEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWD 163 (479) T ss_pred hhhhcCCceecc------CCHHHHHHHHHHH-hcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEccceeEEEEe Confidence 999999999875 3455677776655 5899999999999999999999999997 5789999999999999998 Q ss_pred cC---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 157 NN---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 157 ~g---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) ++ +++.++.+.+....+.+. ..+.|.|. +..|.+..+.+ ....... .............. T Consensus 164 ~~~~~~~~~~ir~y~~~~~~~~~-~~~~e~y~------------~~~i~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~ 226 (479) T protein:vir:79 164 SKRQRELVAFIRFYYIEDIDGNK-IKRVEYYT------------ENDITYFIERG--NSFIQEF--LYDEYGKMTDIQEG 226 (479) T ss_pred CCCCCceEEEEEEEEEeecCCce-EEEEEEEe------------CCcEEEEEecC--Ccccccc--cccccccccccccc Confidence 64 344443332222222222 22345553 34455433332 2111111 11111111111111 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKS 313 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~ 313 (518) .......+++....++++++| ++.|.|+|++.++++|++|.++|+++++++....++.|...+-... T Consensus 227 ~~~~~~~~~~~~~vPvv~~~n---------n~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~---- 293 (479) T protein:vir:79 227 HFRINNKEQGWGKVPFIPFKN---------NEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTS---- 293 (479) T ss_pred cccccccccCCCcccEEEecC---------CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccc---- Confidence 111122344444433433333 3569999999999999999999999999998887777754431000 Q ss_pred ccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHH Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWS 393 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s 393 (518) ...+.........+.. ++ ...++.+++++.++.+...++.+.+.|...++.+.-+++. .+..||+++++ T Consensus 294 ----~~~~~~~~~~~~~i~~--~~----~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~-~gn~Sg~Ai~~ 362 (479) T protein:vir:79 294 ----LQEFIDNIRYYKSIKV--DG----GGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQN-TGDKSGVALKF 362 (479) T ss_pred ----cccchhhhhhccceec--CC----CCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccccccc-ccchhHHHHHH Confidence 0011112222223322 11 2337889999999999999999999998888765433332 24579999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVE 473 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~ 473 (518) ..+.+..++..++..++.+|+++++.++.+.+.. ++......+++|.|++.++.|..+.+++++++ +|+||.+ T Consensus 363 ~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-----~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl--~g~iS~e 435 (479) T protein:vir:79 363 LYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKIS-----GNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDE 435 (479) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHH Confidence 9999999999999999999999999998876432 23345566899999999999999999999887 4999999 Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 474 EKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 474 ~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++++ +|..++ +++|++||++|+.......... ++..+| T Consensus 436 t~l~~-l~~v~d--~~~E~~ri~~E~~~~~~~~~~~---~~~~~~ 474 (479) T protein:vir:79 436 TIVSN-HPWVED--VNDELERLKKQEDTQKEYDDLI---PNNQDG 474 (479) T ss_pred HHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHhcc---CcccCC Confidence 99987 566655 5688999999986543222221 233333 No 12 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=100.00 E-value=1.9e-47 Score=276.70 Aligned_cols=440 Identities=16% Similarity=0.072 Sum_probs=279.4 Q ss_pred HHHHH----HHHhcCCCCh--------------------hhHHhhHHHHhhccchhhhhhhhhhhhhhhcc-CCCCcccc Q lcl|Aclame:pro 7 MTRFI----KGWLNGKPNG--------------------SEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQ-GYVPTVHD 61 (518) Q Consensus 7 ~~~~~----~~w~~g~p~~--------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~ 61 (518) |.+.- |.|+..+-+. ....++.++.+.|.+.+.-..+.. ..+.. ...+...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~---~~~~~~~~~~~~~~ 77 (468) T protein:vir:96 1 MIDIFWPNEKPYHERVVEQIKPQYETQEEMILRLITKHKENVEDITVGERYYNHQPDVLFNAP---KRNVKGEIDPFKPD 77 (468) T ss_pred CccccCCcCceeehheeecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc---cccccccccccccc Confidence 21110 2233222110 011222223333433322211110 11111 11233456 Q ss_pred ceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCe Q lcl|Aclame:pro 62 KLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGR 140 (518) Q Consensus 62 ~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~ 140 (518) .++++|+++.|++..++++|++|+++++ +++.+++.|+++++ |+|...+.+.+..+++.|.+++++|++ +|+ T Consensus 78 ~ki~~n~~~~Iv~~~~~~l~g~p~~~~~------~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~ 150 (468) T protein:vir:96 78 WRMYTNYHQNLVDQKVAYAVANPVTYGT------EDEKSLKTIQEVLN-HKWDDKLVDILTAASNKGVEWIQPYVDEQGE 150 (468) T ss_pred cccccchHHHHHHHHHhhhccCCceecc------CChHHHHHHHHHHh-cCHHHHHHHHHHHHhhcCeEEEEEEEcCCCc Confidence 6899999999999999999999999875 35567888999885 789999999999999999999999997 678 Q ss_pred EEEEEEcCCeeEEEEEcCcEEEE-EEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccc Q lcl|Aclame:pro 141 PSISVHSSSQFWIDFKNNEPFRF-NFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAE 219 (518) Q Consensus 141 i~i~~v~ad~~~P~~~~g~~~~~-~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~ 219 (518) +++.+++|++++|+|+++...+. +|++.....+.. +.|.+ .+.+|.+..+. ++.... .. T Consensus 151 ~~i~~~~p~~~~~v~~~~~~~~~~~~ir~~~~~~~~----~~~~~------------~~~~~~~~~~~--~~~~~~--~~ 210 (468) T protein:vir:96 151 FKTFRVPAEQAIPIWTNKERDELKAFIRLYELDGGE----RVEYW------------TANDVTFYELK--DGQLIP--DY 210 (468) T ss_pred eEEEEEcccceEEEEcCCCCCceEEEEEEEEecCce----EEEEE------------eCCeEEEEEEc--CCceee--cc Confidence 99999999999999987543332 233222222211 12222 23333332222 221110 00 Q ss_pred ccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee Q lcl|Aclame:pro 220 RLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKI 299 (518) Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri 299 (518) .... ............+++...+++++++| ++.|+|+|++.++++|++|..+|+++++++.....+ T Consensus 211 ~~~~-----~~~~~~~~~~~~~~~~~~iPvv~~~n---------~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~ 276 (468) T protein:vir:96 211 YQGE-----EHVQAHYYVGNKSMSWNRVPFIPFKN---------NPQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELI 276 (468) T ss_pred cccc-----cccccceeeccccccCCcccEEEecC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 0000 00000111112234554444444443 346999999999999999999999999998766666 Q ss_pred eechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 300 AASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF 379 (518) Q Consensus 300 ~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf 379 (518) .+...+-..+ . -.+..+.+.+..+.... +++..++.+++++.++++...++.+.+.|...++.+.-.+ T Consensus 277 lv~~g~~~~~------~--~~~~~~~~~~~~i~~~~----d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~ 344 (468) T protein:vir:96 277 YVLKGYEGED------L--EEFMYNLKYYKAINVDG----DGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVDFQQ 344 (468) T ss_pred eeeecCCccc------c--chhhhhhhcCceEEecC----CCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCcccccc Confidence 6544431110 0 01222222233333221 2223478899999999999999999999999987654333 Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 380 NLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 380 ~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) .-.++..||.++++..+.+..++.+++..++++|+++++.|+.+. +......++.|.|++.++.|..+.++ T Consensus 345 ~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~---------g~~~d~~~i~i~f~~~~p~d~~e~a~ 415 (468) T protein:vir:96 345 DKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFY---------KLSIKVQDVEITFNFNVMVNELEQSQ 415 (468) T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCcccceeeEEecCCCCcCHHHHHH Confidence 323456799999999999999999999999999999999887753 12334457999999999999988888 Q ss_pred HHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 460 TLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++ .+|+||.++++++ +|.+++ +++|++||++|+......++. +++.+.+.+ T Consensus 416 ~~~---~~g~iS~et~i~~-l~~v~D--~~~E~~ri~~E~~~~~~~~~~-~~~~~~~~~ 467 (468) T protein:vir:96 416 IGV---NSQYLSKETVVTN-HPWVDD--PVAEMERIDQEELALPSIEEG-LNGKENNEP 467 (468) T ss_pred HHH---hcCCCchHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHhhc-cCCCCCCCC Confidence 654 5699999999976 576665 678999999998766544433 333333333 No 13 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=100.00 E-value=3.7e-47 Score=275.11 Aligned_cols=438 Identities=16% Similarity=0.059 Sum_probs=282.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccC-CCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQG-YVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) --+.-.|..+|+..- .+..++.+..+.|.+...-..+ .+..+... ..++...+++++|+|+.||+..|++ T Consensus 25 ~~~~~~i~~~i~~~~------~~~~~~~~~~~Yy~g~~~i~~~---~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~ 95 (474) T protein:vir:96 25 ETQEEMIIRLINDHK------PKIDDITVGERYYNHDPDVLRL---APKLDNKGEIDPLKPDWRMFTNYHQNLVDQKVAY 95 (474) T ss_pred CChHHHHHHHHHHHH------HHHHHHHHHHHHhccCCcchhc---cchhcccccccccccchhcccchHHHHHHhhhhh Confidence 111222233332220 1122333333344443221111 11222221 1234556689999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g 158 (518) ||++|+++++ +++.+++.|+++++ |++...+.+.+..+++.|.+++++|++ +|+++|.+++|++++|+|+++ T Consensus 96 l~g~p~~~~~------~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~i~~~~p~~~~~v~d~~ 168 (474) T protein:vir:96 96 AVANPVTFSS------DDDKSLKTIQEVLN-HKWDDKLVDILTAASNKGIEWLQPYIDENGEFKTFRVPAEQAIPIWTNK 168 (474) T ss_pred hcccCceeec------CchHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeeEEEEEecCCCceEEEEEcccceEEEEcCC Confidence 9999999875 35567888988875 678888999999999999999999996 688999999999999999874 Q ss_pred ---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 159 ---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 159 ---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) ++..++.. ....+... .|.+ ....|.+..+. ++...... ..... .. .... T Consensus 169 ~~~~~~~~vr~--~~~~~~~~----~~~y------------t~~~v~~~~~~--~~~~~~~~-~~~~~---~~---~~~~ 221 (474) T protein:vir:96 169 ERDTLKAFIRY--YRLDGAER----VEYW------------TDSDVTYYEYQ--DGILIPDY-YHGEE---HI---QSHY 221 (474) T ss_pred CCCceEEEEEE--EeecCceE----EEEE------------eCCeEEEEEec--CCceeecc-ccccc---cc---cccc Confidence 34333332 33222211 1111 12233332222 21111100 00000 00 0001 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcc Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTD 315 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~ 315 (518) .....+++....+++.++| ++.|.|+|+..+++||++|.++|+++++++....++.|...+-..+ T Consensus 222 ~~~~~~~~~g~iPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~------ 286 (474) T protein:vir:96 222 YVGNKRVSWGRVPFIPFKN---------NPQEMSDLFMYKTIIDAMDKRLSDTQNTFDESTELIYILKGYEGQD------ 286 (474) T ss_pred cccccccCCCceeEEEecc---------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccc------ Confidence 1112345555555555544 3469999999999999999999999999998888888765542110 Q ss_pred ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHH Q lcl|Aclame:pro 316 KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQ 395 (518) Q Consensus 316 ~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~ 395 (518) .-.+..+...+..+... +.+..++++++++.++++...++.+.+.|...++.+.-++.-.++..||.+++... T Consensus 287 --~~~~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~ 359 (474) T protein:vir:96 287 --LDEFMRNLKYYKAINVD-----GDGSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQQDKFGNSPSGIALKFMY 359 (474) T ss_pred --ccchhhhhhcCceEEec-----CCCCceeEEeecCChHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHH Confidence 01122222333333321 11234789999999999999999999999999987755554334567999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 396 DATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEK 475 (518) Q Consensus 396 ~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~ 475 (518) +.+.+++..++..++.+|+++++.|+.+.. ......++.|.|++.+|.|..+.++.+ +++|+||.+++ T Consensus 360 ~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~---------~~~~~~~i~i~f~~~~p~~~~e~~~~~---~~ag~iS~et~ 427 (474) T protein:vir:96 360 SNLDLKANKLKNKTLTALQELLQYIIDFYK---------LNIKVQDVEITFNFNVMVNELEQSQIG---VQSQYLSKETV 427 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcccceeeEEeccCCCcCHHHHHHHH---HhcCCCchHHH Confidence 999999999999999999999998877631 223345789999999999988888754 56799999999 Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 476 VKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 476 v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++ +|.+++ +++|++||++|+.......+...+..++..+ T Consensus 428 ~~~-~~~v~d--~~~E~~ri~~E~~e~~~~~~~~~~~~~~~~~ 467 (474) T protein:vir:96 428 VTN-HPWVDD--PVAELERIEQDNIDFNKQLPPLEGDANGRAQ 467 (474) T ss_pred HHh-CCCCCC--HHHHHHHHHHHHHHHHhcccccccccccccC Confidence 976 576665 5689999999987654333333332222222 No 14 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=100.00 E-value=7.1e-47 Score=273.60 Aligned_cols=435 Identities=15% Similarity=0.078 Sum_probs=276.9 Q ss_pred CCcC-------------------chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcccc Q lcl|Aclame:pro 1 MGVW-------------------SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHD 61 (518) Q Consensus 1 ~~~~-------------------~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 61 (518) |-.+ --|..+|..|- ....++.++.++|.+.+.-.++..+ ..+......+... T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~------~~~~~~~~~~~Yy~g~~~i~~r~~~--~~~~~~~~~~~~~ 78 (474) T protein:vir:95 7 MPWDKPYGEEVVEQLKPQFETQEEMIIRLIDDHR------KQLDKITVGQRYYDKDNDIVKQMKK--VDVYGNIDYDKPD 78 (474) T ss_pred cCCCCchhhHHHHhhhhccCChHHHHHHHHHHHH------HHHHHHHHHHHHhcccCchhccccc--ccccccccccccc Confidence 1111 12333333331 1233344444445444332222111 1111222344456 Q ss_pred ceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCe Q lcl|Aclame:pro 62 KLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGR 140 (518) Q Consensus 62 ~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~ 140 (518) .++++|+++.|++..|++||++|+++++ +|+.+++.|+.+++ |+|...+.++++.+++.|.+++.+|++ +|+ T Consensus 79 ~ki~~n~~~~Ivd~~~~~l~g~p~~~~~------~d~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~ 151 (474) T protein:vir:95 79 WRITTNFHQNLVDQKVSYVASKPVTYSC------EDESVLKIIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINENGE 151 (474) T ss_pred ceeccchHHHHHHHHHhhhccCCceecc------CchHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCcEEEEEEecCCCc Confidence 6899999999999999999999999875 35667888988875 789999999999999999999999996 578 Q ss_pred EEEEEEcCCeeEEEEEcCcEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccc Q lcl|Aclame:pro 141 PSISVHSSSQFWIDFKNNEPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAE 219 (518) Q Consensus 141 i~i~~v~ad~~~P~~~~g~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~ 219 (518) +++.+++|++++|+|+++...+ +.|++.....+... .+. +.+..|.+ |........... T Consensus 152 ~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~----~~~------------y~~~~~~~--~~~~~~~~~~~~-- 211 (474) T protein:vir:95 152 MKLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEK----VEF------------WTDTTVTY--YVLENGGLIPDY-- 211 (474) T ss_pred eEEEEEcccceEEEEcCCCCCceEEEEEEEEEcCeeE----EEE------------EeCCeEEE--EEEcCCcccccc-- Confidence 9999999999999998753222 23333332222211 111 12222322 222221111000 Q ss_pred ccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee Q lcl|Aclame:pro 220 RLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKI 299 (518) Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri 299 (518) . ...... ......++...+++++++| +|.|+|+|++.++++|++|.++|+++++++.....+ T Consensus 212 -----~---~~~~~~-~~~~~~~~~g~iPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~ 273 (474) T protein:vir:95 212 -----Y---YGANHI-QSHFSNGNWGRVPFIAFKN---------NPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELI 273 (474) T ss_pred -----c---cCcccc-cccccccCCCccceEeecC---------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 0 000011 1112233443333333332 356999999999999999999999999999877777 Q ss_pred eechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 300 AASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF 379 (518) Q Consensus 300 ~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf 379 (518) .|...+-..+ ...+......+..+... ++..++.++++++++++...++.+.+.|...++.+.-++ T Consensus 274 lv~~g~~~~~--------~~~~~~~~~~~~~i~~~------~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~ 339 (474) T protein:vir:95 274 YILKGYEGQD--------LEEFMRGLKYYKAINVD------GDGGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQT 339 (474) T ss_pred eeeecCCccc--------chhhhhhhhccceeecc------CCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccc Confidence 7655442111 01122233334444321 122478889999999999999999999998887764333 Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 380 NLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 380 ~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) +--+++.||.++++..+.+..++..++..++.+|+++++.|+.+.. .......++|.|+++++.|..+.++ T Consensus 340 ~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g---------~~~d~~~i~v~f~~~~p~d~~e~a~ 410 (474) T protein:vir:95 340 DKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNN---------LKMDVKDIEISFNFNRMMNDAEQSQ 410 (474) T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcccceeeEEeccCCCcCHHHHHH Confidence 3223557999999999999999999999999999999998877631 2234567899999999999988888 Q ss_pred HHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 460 TLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .++ .+|+||.++++++ +|..++ +++|++||++|+.......+...+ ...+++ T Consensus 411 ~~~---~~g~iS~et~i~~-l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~-~~~d~~ 462 (474) T protein:vir:95 411 IIA---QSQYLSRETLVKS-SPLVDD--YKAELERIEQEQMEYNKQLPNLDD-GGADGA 462 (474) T ss_pred HHH---hcCCCchHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHhccccccc-ccCCCC Confidence 654 4699999999976 576665 557899999987543222221111 111111 No 15 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=100.00 E-value=1.6e-46 Score=271.59 Aligned_cols=443 Identities=15% Similarity=0.067 Sum_probs=278.1 Q ss_pred CCc-----------------------CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC Q lcl|Aclame:pro 1 MGV-----------------------WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP 57 (518) Q Consensus 1 ~~~-----------------------~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 57 (518) |-| .--|.++|+.|.. +..++.+..+.|.+.+.-..+. ....+.....+ T Consensus 2 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~~i~~~~~------~~~~~~~~~~yY~g~~~i~~~~--~~~~~~~~~~~ 73 (478) T protein:vir:10 2 ISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHKE------NIDNITMGERYYNHHPDILDAP--PKRDVNGDYDE 73 (478) T ss_pred ccccCCCCchhHHHHHHHHhhccCCcHHHHHHHHHHHHH------HHHHHHHHHHHhcCCCchhccc--ccccccccccc Confidence 222 1122233333320 1122222223333332211110 01112222334 Q ss_pred ccccceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE Q lcl|Aclame:pro 58 TVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL 137 (518) Q Consensus 58 ~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d 137 (518) .....++++|+|+.||+..|+++|++++++++ +++.+++.|+++++ |+|...+.+.+..+++.|.+++.+|++ T Consensus 74 ~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~------~~d~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~~~d 146 (478) T protein:vir:10 74 TKPDWRMYTNYHQNLVDQKVAYAVANPVTFGV------DNDKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVD 146 (478) T ss_pred ccccceeccchHHHHHHHHHhhhccCCeeeec------CChHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEec Confidence 55667899999999999999999999999875 34567788988875 789999999999999999999999997 Q ss_pred -CCeEEEEEEcCCeeEEEEEcCcEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccc Q lcl|Aclame:pro 138 -NGRPSISVHSSSQFWIDFKNNEPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTP 215 (518) Q Consensus 138 -~~~i~i~~v~ad~~~P~~~~g~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~ 215 (518) +|++++.+++|++.+|+|+++...+ ++|++.....+... .+.+ .+..|.+. +...+.... T Consensus 147 ~~g~~~~~~~~p~~~~~i~d~~~~~~~~~~v~~~~~~~~~~----~~~y------------~~~~i~~~--~~~~~~~~~ 208 (478) T protein:vir:10 147 EEGEFKTFRVPAEQAVPIWTNKERDELQAFIRVYELDGAER----VEYW------------TKDDVTYY--ELKEGQLIP 208 (478) T ss_pred CCCeeEEEEEcccceEEEEcCCCCCceEEEEEEEEecCceE----EEEE------------eCCeEEEE--EEcCCeeec Confidence 6899999999999999998754322 22333333322211 1111 22333332 222221110 Q ss_pred ccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 216 ISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKT 295 (518) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g 295 (518) ..... . .....+. .....+++....+++.++| +|.|+|+|++.+++||++|.++|++++.++.. T Consensus 209 ~~~~~-~---~~~~~~~---~~~~~~~~~~~vPvv~~~n---------~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~ 272 (478) T protein:vir:10 209 DFYRS-D---DHIQPHY---YQGNKLMSWGRVPFIPFKN---------NPQEVSDLFMYKTIIDALDKRLSDTQNTFDES 272 (478) T ss_pred ccccc-c---cccccce---ecccccccCCccceEEecc---------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 00000 0 0000000 0111234444433433333 46799999999999999999999999999987 Q ss_pred cceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 296 KTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYN 375 (518) Q Consensus 296 ~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s 375 (518) ..++.+...+-..+ .+ .+..+...+..+....+ .+..++.+++++.++++...++.+.+.|...++.+ T Consensus 273 ~~p~~~~~g~~~~~-----~~---~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p 340 (478) T protein:vir:10 273 VELIYILKGYEGED-----MK---DFMHNLKYYKAISVAGE----SGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGV 340 (478) T ss_pred hCceeeeecCCccc-----cc---hhhhhhhhcceEEecCC----CCCcceEEeecCChHHHHHHHHHHHHHHHHHhCcc Confidence 77777765542111 00 11111222223322211 12346788999999999999999999999888876 Q ss_pred ccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHH Q lcl|Aclame:pro 376 PATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLN 455 (518) Q Consensus 376 ~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~ 455 (518) .-+++-.++..||.++++..+.+..++++++..++.+|+++++.|+.+. +.......|+|.|++.++.|.. T Consensus 341 ~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~---------g~~~~~~~i~i~f~~~~p~d~~ 411 (478) T protein:vir:10 341 DFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFY---------RLDVKVQDIEITFNFNVMVNEL 411 (478) T ss_pred ccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCcccccceEEecCCCCCCHH Confidence 5444333456799999999999999999999999999999998887653 1233445789999999999999 Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCC---CC Q lcl|Aclame:pro 456 ELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETK---GG 518 (518) Q Consensus 456 ~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~---gG 518 (518) +.+++++++ +|+||.++++++ +|.+++ +++|++||++|+.......+....+.++. ++ T Consensus 412 e~a~~~~kl--~g~iS~et~~~~-l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 472 (478) T protein:vir:10 412 ENSQIAMNS--TGLLSKETILSN-HAWVED--PVAEMERIEQENIELNQQLPDIEEGLNGEQQRQS 472 (478) T ss_pred HHHHHHHHH--hCCCChHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHhhccccccccCCCCCCCC Confidence 999998876 699999999976 565554 66889999998865432222211111111 11 No 16 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=100.00 E-value=5.6e-46 Score=268.67 Aligned_cols=450 Identities=8% Similarity=-0.008 Sum_probs=284.6 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) +--...|..+|.+.... ...++.+..+.|.+..+-.++. .........++++++|+|+.|++..++++ T Consensus 39 ~~~~~~i~~~i~~~~~~-----~~~r~~~l~~Yy~g~~~i~~~~-------~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl 106 (511) T protein:vir:96 39 LQNVNEVSKYIEHHMDY-----QRPRLKVLSDYYEGKTKNLVEL-------TRRKEEYMADNRVAHDYASYISDFINGYF 106 (511) T ss_pred hccHHHHHHHHHHHHHh-----hHHHHHHHHHHhcccCcccccc-------CcCcccccCcceeecchHHHHHHHHHhhh Confidence 11222244444333211 1112222233333332211111 11122344567899999999999999999 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcCc Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNNE 159 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g~ 159 (518) |+.|++++. +++.+++.|++++++|+|...+.+.+..+++.|.++..+|.+ +|++++.+++|.+++|+|++.. T Consensus 107 ~g~p~~~~~------~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~~p~~~~~vydd~~ 180 (511) T protein:vir:96 107 LGNPIQYQD------DDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTI 180 (511) T ss_pred ccCCceeec------CchHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCC Confidence 999999975 345678899999999999999999999999999999999997 5889999999999999998753 Q ss_pred EEE-EEEEEEEEe--cC--ceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccC Q lcl|Aclame:pro 160 PFR-FNFFEEIPT--SN--KADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) Q Consensus 160 ~~~-~~f~~~~~~--~~--~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (518) ... ++|++.... .+ .....++.|.+ +...|.. |..+++...... . T Consensus 181 ~~~~~~~vr~~~~~~~d~~~~~~~~~~~iy------------t~~~i~~--~~~~~~~~~~~~-------------~--- 230 (511) T protein:vir:96 181 ERNSIAGVRYLRTKPIDKTDEDEVFTVDLF------------TSHGVYR--YLTSRTNGLKLT-------------P--- 230 (511) T ss_pred CCceEEEEEEEEeeeccccccceEEEEEEE------------eCCcEEE--EEecCCCccccc-------------c--- Confidence 222 233322221 11 11111122222 2333332 333222211100 0 Q ss_pred cccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCc Q lcl|Aclame:pro 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKST 314 (518) Q Consensus 235 ~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~ 314 (518) .+....+++....++++++| ++.|.|+|++++++||++|.++|++++.++....++.|...+...+..... T Consensus 231 ~~~~~~~~~~~~vPvv~~~n---------n~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~ 301 (511) T protein:vir:96 231 RENGFESHSFERMPITEFSN---------NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVR 301 (511) T ss_pred cccccccccCCceeeEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCccCCchhhc Confidence 00111234444444444443 235999999999999999999999999999888888887775433221110 Q ss_pred c-ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHH Q lcl|Aclame:pro 315 D-KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWS 393 (518) Q Consensus 315 ~-~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s 393 (518) . ............+....+ ...+....++.+++++.++.+...++.+.+.|...++.+.-+++--++..||.+++. T Consensus 302 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~ 378 (511) T protein:vir:96 302 KQKEANVLFLEPTVYADSEG---RETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKY 378 (511) T ss_pred ccccccceeccccccccccc---ccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHH Confidence 0 000001111111111111 112233457889999999999999999999999999876655543235679999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVE 473 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~ 473 (518) ..+.+.+++..++..++.+|+++++.|+.+.+.... .........++|.|.+.++.|..+.+++++++ +|+||.+ T Consensus 379 ~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~---~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~G~iS~e 453 (511) T protein:vir:96 379 KLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWS---IDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQT 453 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---cccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChH Confidence 999999999999999999999999999887643211 11122334789999999999999999998876 5999999 Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccccCCCC--chhccCcCCCCC Q lcl|Aclame:pro 474 EKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPD--PEAIGGMETKGG 518 (518) Q Consensus 474 ~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~d--p~~~~~~~~~gG 518 (518) +++++ +|..++ +++|++||++|++...... +..........| T Consensus 454 t~l~~-l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 497 (511) T protein:vir:96 454 TLMSL-FSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDD 497 (511) T ss_pred HHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC Confidence 99976 565654 5689999999975432111 110000111111 No 17 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=100.00 E-value=1e-45 Score=267.21 Aligned_cols=443 Identities=13% Similarity=0.049 Sum_probs=289.7 Q ss_pred CCc-CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGV-WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~-~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) +.. +-.|..+|+.+-. ....++.+..++|.+......+. ......+..++++++|+|+.|++..|++ T Consensus 38 ~~~~~~~i~~~i~~h~~-----~~~~rl~~l~~yY~g~~~~i~~~-------~~~~~~~~~~~ki~~n~~k~Ivd~~~~y 105 (502) T protein:vir:48 38 MVNNWELLKNFINHHKL-----RQAPRIQELLDYARGENHDVLKS-------GRRKDNEMADKRAVHNYGRMISKFKTGY 105 (502) T ss_pred ccccHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcccccc-------ccccccccccceeecchHHHHHHHHhhh Confidence 111 1124445544421 22233444444444432111000 1122344556789999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g 158 (518) ||++|++++.. +..+++.+++.|++++++|+|...+.+.+..+++.|.+++.+|.+ +|+++|.+++|.+.+|+|++. T Consensus 106 l~g~p~~~~~~--d~~~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~vydd~ 183 (502) T protein:vir:48 106 LAGNPIRVEYD--DNEDNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNS 183 (502) T ss_pred hcccCeeEecC--CccchhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCceEEEEEcccceEEEEcCC Confidence 99999988764 334456788999999999999999999999999999999999997 589999999999999999864 Q ss_pred ---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 159 ---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 159 ---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) +++.++.+......+.+ +++.|.+. +..|.+ |...++ .. T Consensus 184 ~~~~~~~~ir~~~~~~~~~~--~~~~~iyt------------~~~i~~--~~~~~~--~~-------------------- 225 (502) T protein:vir:48 184 LEDNSIAAVRYYNRGTLQNA--KDVVEIYT------------NQHIYT--LDASDS--FN-------------------- 225 (502) T ss_pred CCCceEEEEEEEEEeecCCc--EEEEEEEe------------CCeEEE--EEeCCc--ee-------------------- Confidence 34444333222222222 22233332 222221 121110 00 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcc Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTD 315 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~ 315 (518) .....+++....++++++| .+.|+|+|++++++||++|.++|++++.++....++.|...+.....+..+. T Consensus 226 ~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~ 296 (502) T protein:vir:48 226 EISVTPHAFGTVPITEFLN---------NADGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPQGMQAS 296 (502) T ss_pred eccceecCCCccceEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCcccccccchh Confidence 0001233444333333333 2469999999999999999999999999998888877765543222111110 Q ss_pred ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHH Q lcl|Aclame:pro 316 KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQ 395 (518) Q Consensus 316 ~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~ 395 (518) . +....-.+.......+ +......++.+++++.++.+...++.+.+.|...++.+.-+++--++..||.+++... T Consensus 297 ~----~~~~~~~~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~ 371 (502) T protein:vir:48 297 D----MKRTRLMQLKPPKSAD-GKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTPDMSDNHFSGNASGEALKYKL 371 (502) T ss_pred h----hhhcceeecccccccc-ccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCCCcCccccccCchHHHHHHHH Confidence 0 0000001111111111 2233456788999999999999999999999998888765554334567999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 396 DATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEK 475 (518) Q Consensus 396 ~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~ 475 (518) +.+.+++..++..++.+|+++++.|+.+..... .........|+|.|.+.++.|..+.++.++++ +|++|.+++ T Consensus 372 ~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~----~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~ 445 (502) T protein:vir:48 372 FGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVN----EFKDFDESRLKITFTPNLPKSLYEQVSILNDL--GGQVSQETA 445 (502) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHH Confidence 999999999999999999999999988765321 12223345689999999999999999999887 489999999 Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccccC-CCCchhccCcCCCCC Q lcl|Aclame:pro 476 VKLIHPKWEDEEIQAEVKRIYLENAIGE-VPDPEAIGGMETKGG 518 (518) Q Consensus 476 v~~~~~~~~eeea~eev~rI~~E~~~~~-~~dp~~~~~~~~~gG 518 (518) ++++ |..++ +++|++||++|+.... ...+.......+.|+ T Consensus 446 l~~l-~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 486 (502) T protein:vir:48 446 LSLS-GLVEN--PTEELDKINEESSKIDFKGYPSYFYDNVGKYT 486 (502) T ss_pred HHhC-CCCCC--HHHHHHHHHHHHHhhhhhcccccccccccccC Confidence 9874 65554 5688999998876532 122333333223333 No 18 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=100.00 E-value=7.1e-46 Score=268.11 Aligned_cols=434 Identities=9% Similarity=0.001 Sum_probs=284.5 Q ss_pred hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCcc Q lcl|Aclame:pro 6 VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKPL 85 (518) Q Consensus 6 ~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~~ 85 (518) =|.+++. .+..++.+..+.|.+......+. .....++...+++++|+|+.|++..|++||+.|+ T Consensus 1 ~~~~~~~---------~~~~r~~~l~~yy~g~~~~~~~~-------~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~ 64 (440) T protein:vir:95 1 MLAAFLG---------SQKQRLAILASYAQGDNFSILSG-------HRRLDDEKADYRVRHKWGGYISSFATGYVIGNPV 64 (440) T ss_pred ChhhHHH---------HHHHHHHHHHHHhccCCcccccc-------cccccccCCcceeecchHHHHHHhhhhheeccCc Confidence 2222221 12223333334444433221111 0112344556789999999999999999999999 Q ss_pred eEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcCcEEE-E Q lcl|Aclame:pro 86 SIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNNEPFR-F 163 (518) Q Consensus 86 ~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g~~~~-~ 163 (518) ++++... .++...+.|++++++|+|...+.+.+..+++.|.+++.+|.+ +|++++.+++|..++|+|++..... + T Consensus 65 ~~~~~~~---~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~ 141 (440) T protein:vir:95 65 SIGVMEG---GSADQLSTIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDRVVLISPLEMFVIRDLTVEQNII 141 (440) T ss_pred eEeeCCC---ccHHHHHHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceE Confidence 9876432 234456789999999999999999999999999999999996 5789999999999999997643222 2 Q ss_pred EEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEE-EEEEeccCCccccccccccccccccccccccCcccceeec Q lcl|Aclame:pro 164 NFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVT-YSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSI 242 (518) Q Consensus 164 ~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~-n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~t 242 (518) +++......+.. ++ + .+.+..|. +... +++... .......++ T Consensus 142 ~~i~~~~~~~~~-~~---~------------vyt~~~~~~~~~~-~~~~~~--------------------~~~~~~~~~ 184 (440) T protein:vir:95 142 AAVHLPIYADKV-NM---T------------VYTKDKVITYKPY-SNNSVR--------------------LVVDDVKKH 184 (440) T ss_pred EEEEEEEecCce-EE---E------------EEeCCeEEEEEEe-cCCccc--------------------eeecceeec Confidence 222222222221 11 1 11122222 2221 111100 001112345 Q ss_pred CCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCC Q lcl|Aclame:pro 243 GLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMN 322 (518) Q Consensus 243 g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d 322 (518) +....++++++| + +.|+|+|+..+++|+++|.++|+++++++....++.|...+............ .+. T Consensus 185 ~~g~vPvv~~~n----~-----~~g~sd~e~v~~lida~~~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~e~~~--~~~ 253 (440) T protein:vir:95 185 SYNDVPVVEWWN----N-----RFRMGDYESEISLIDAYDAGQSDTANYMSDLNDAMLLVKGDLDGIKLSPEDAA--KMK 253 (440) T ss_pred cCceeeEEEeeC----C-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcceeeeecccccCCCCccchh--hhh Confidence 555545555444 2 35999999999999999999999999999887777765554221111111111 111 Q ss_pred cchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKI 402 (518) Q Consensus 323 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~ 402 (518) .....+..... ...+.+....++.+++++.++.+...++.+.+.|...++.+.-+++.-+++.||.++++..+.+.+++ T Consensus 254 ~~~~~~~~~~~-~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~ 332 (440) T protein:vir:95 254 DANMLFLKTGI-STTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIPNLDDDRFNSTSSGIALLYKMIGLEQVR 332 (440) T ss_pred hccceeccccc-ccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHH Confidence 11112221111 11122333457889999999999999999999999999887655543345679999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCC Q lcl|Aclame:pro 403 EKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPK 482 (518) Q Consensus 403 ~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~ 482 (518) .+++..++.+|+++++.++.+..... +.......++|.|.+.++.|..+.++.++++ +|++|.+++++++ |. T Consensus 333 ~~k~~~~~~~l~~~~~li~~~~~~~~-----~~~~~~~~v~i~f~~~~p~~~~~~ad~~~kl--~g~iS~et~~~~l-~~ 404 (440) T protein:vir:95 333 KDKETYFTKALRRRYELISNIHKAIN-----GPVIEANKLTFTFHPNIPQDVWTEIKAYIEA--GGEISQETLMENA-SF 404 (440) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC-----CcccccccceEEeCCCCCCCHHHHHHHHHHH--hccCcHHHHHHhC-CC Confidence 99999999999999999888765432 2333456799999999999999999999987 5899999999875 65 Q ss_pred CCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 483 WEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 483 ~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .++ ++|++||++|+.....+-...++.-++.|+ T Consensus 405 ~d~---~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 437 (440) T protein:vir:95 405 TDY---KTEHSRILKQGGSSDLEIGQIVGDADVGQA 437 (440) T ss_pred CCc---HHHHHHHHHHHHHhhhhHHhhccCCCCCCc Confidence 543 358899999987654433333333333333 No 19 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=100.00 E-value=9.7e-46 Score=267.37 Aligned_cols=439 Identities=15% Similarity=0.069 Sum_probs=280.8 Q ss_pred CCcCch---------------HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 1 MGVWSV---------------MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 1 ~~~~~~---------------~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) |=++-+ ..+.|+.=++... .+..++.+..+.|.+.+.-.++.. +..|......+....+++ T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~~~~~~~~~~YY~g~~~i~~~~~--~~~~~~~~~~~~~~~ki~ 82 (474) T protein:vir:97 7 MPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHR--KQLDKITVGQRYYDKDNDIVKQMK--KVDVHGNIDYDKPDWRIT 82 (474) T ss_pred ccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhcccc--hhccccccccccCcceee Confidence 211111 1122222221111 123444455555555443322211 122333345556677899 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEE Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSIS 144 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~ 144 (518) +|+++.||+..|+++|++|+++++ +++.+++.|+.++ +|+|...+.++++.+++.|.+++.+|++ +++++|. T Consensus 83 ~n~~k~Ivd~~~~~l~g~p~~~~~------~d~~~~~~l~~~~-~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~ 155 (474) T protein:vir:97 83 TNFHQNLVDQKVSYVASKPVTYSC------EDENVLKVIHDVL-DTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLF 155 (474) T ss_pred cchHHHHHHHHHhhhhcCCceecc------CcHHHHHHHHHHH-hccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEE Confidence 999999999999999999998875 3566788898876 5789999999999999999999999997 5789999 Q ss_pred EEcCCeeEEEEEcCcEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc Q lcl|Aclame:pro 145 VHSSSQFWIDFKNNEPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE 223 (518) Q Consensus 145 ~v~ad~~~P~~~~g~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~ 223 (518) +++|++++|+|+++.... ++|++.....+.. +.+.+ +...|.+ |+..++......... T Consensus 156 ~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~----~~~~y------------t~~~~~~--y~~~~~~~~~~~~~~--- 214 (474) T protein:vir:97 156 RVPAEQAIPIWVDKEREELKSFIRYYKFNNEE----KVEFW------------TDTTVTY--YVLENGGLIPDYYYG--- 214 (474) T ss_pred EEcccceEEEEcCCCCCceEEEEEEEEecCeE----EEEEE------------eCCeEEE--EEEcCCccccccccC--- Confidence 999999999998754322 2333333332221 11211 1222222 222222111100000 Q ss_pred ccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeech Q lcl|Aclame:pro 224 QITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASE 303 (518) Q Consensus 224 ~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~ 303 (518) ....+....+++...+++++++| +|.|+|+|++.+++||++|.++|+++++++.....+.|.. T Consensus 215 --------~~~~~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~ 277 (474) T protein:vir:97 215 --------ANHVQSHFSNGNWGRVPFIAFKN---------NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILK 277 (474) T ss_pred --------cCcccccccccCCCccceEEecC---------CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeee Confidence 00011222345555544444443 3569999999999999999999999999987776666644 Q ss_pred hhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 304 RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN 383 (518) Q Consensus 304 ~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~ 383 (518) .+- +.. .-.+......+..+... . +..++.+++++.++++.+.++.+.+.|...++.+.-++.--+ T Consensus 278 g~~-----~~~---~~~~~~~~~~~~~i~~~--~----~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~ 343 (474) T protein:vir:97 278 GYE-----GED---LEEFMRGLKYYKAINVD--G----DGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFG 343 (474) T ss_pred cCC-----ccc---chhhhhhhhccceeecc--C----CCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccc Confidence 431 100 01122222333333321 1 234788999999999999999999999988876543332223 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 384 REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNN 463 (518) Q Consensus 384 ~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~ 463 (518) +..||.++++..+.+..++..++..++.+|+++++.|+.+.. ...+...+.|+|.+.++.|..+.++.++ T Consensus 344 ~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~---------~~~d~~~i~v~f~~~~p~~~~e~a~~~~- 413 (474) T protein:vir:97 344 SAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNN---------LKTDVKDIEISFNFNRMMNDAEQSQIIA- 413 (474) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcccceeeEEeccCcccCHHHHHHHHH- Confidence 557999999999999999999999999999999999877642 2233457899999999999888888654 Q ss_pred HHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 464 MNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 464 ~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+|+||.++++++ +|..++ +++|++||++|+.......|. ++..+..++ T Consensus 414 --~~g~iS~et~l~~-l~~v~D--~~~E~eri~~E~~~~~~~~~~-~~~~~~~~~ 462 (474) T protein:vir:97 414 --QSQYLSRETLVKS-SPLVDD--YKAELERIEQEQMEYNKQLPN-LDDGGADGA 462 (474) T ss_pred --HcCCCCHHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHhhccc-cCCCCCCCc Confidence 4699999999977 566655 557899999988654322222 111222222 No 20 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=100.00 E-value=9.7e-46 Score=267.37 Aligned_cols=439 Identities=15% Similarity=0.069 Sum_probs=280.8 Q ss_pred CCcCch---------------HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 1 MGVWSV---------------MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 1 ~~~~~~---------------~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) |=++-+ ..+.|+.=++... .+..++.+..+.|.+.+.-.++.. +..|......+....+++ T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~--~~~~~~~~~~~YY~g~~~i~~~~~--~~~~~~~~~~~~~~~ki~ 82 (474) T protein:vir:94 7 MPWDKPYGEEVVEQLKPQFETQEEMIVRLIDDHR--KQLDKITVGQRYYDKDNDIVKQMK--KVDVHGNIDYDKPDWRIT 82 (474) T ss_pred ccCCCchhhHHHHhhhhcccCHHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhcccc--hhccccccccccCcceee Confidence 211111 1122222221111 123444455555555443322211 122333345556677899 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEE Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSIS 144 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~ 144 (518) +|+++.||+..|+++|++|+++++ +++.+++.|+.++ +|+|...+.++++.+++.|.+++.+|++ +++++|. T Consensus 83 ~n~~k~Ivd~~~~~l~g~p~~~~~------~d~~~~~~l~~~~-~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~ 155 (474) T protein:vir:94 83 TNFHQNLVDQKVSYVASKPVTYSC------EDENVLKVIHDVL-DTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLF 155 (474) T ss_pred cchHHHHHHHHHhhhhcCCceecc------CcHHHHHHHHHHH-hccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEE Confidence 999999999999999999998875 3566788898876 5789999999999999999999999997 5789999 Q ss_pred EEcCCeeEEEEEcCcEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc Q lcl|Aclame:pro 145 VHSSSQFWIDFKNNEPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE 223 (518) Q Consensus 145 ~v~ad~~~P~~~~g~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~ 223 (518) +++|++++|+|+++.... ++|++.....+.. +.+.+ +...|.+ |+..++......... T Consensus 156 ~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~----~~~~y------------t~~~~~~--y~~~~~~~~~~~~~~--- 214 (474) T protein:vir:94 156 RVPAEQAIPIWVDKEREELKSFIRYYKFNNEE----KVEFW------------TDTTVTY--YVLENGGLIPDYYYG--- 214 (474) T ss_pred EEcccceEEEEcCCCCCceEEEEEEEEecCeE----EEEEE------------eCCeEEE--EEEcCCccccccccC--- Confidence 999999999998754322 2333333332221 11211 1222222 222222111100000 Q ss_pred ccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeech Q lcl|Aclame:pro 224 QITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASE 303 (518) Q Consensus 224 ~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~ 303 (518) ....+....+++...+++++++| +|.|+|+|++.+++||++|.++|+++++++.....+.|.. T Consensus 215 --------~~~~~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~ 277 (474) T protein:vir:94 215 --------ANHVQSHFSNGNWGRVPFIAFKN---------NPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILK 277 (474) T ss_pred --------cCcccccccccCCCccceEEecC---------CcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeee Confidence 00011222345555544444443 3569999999999999999999999999987776666644 Q ss_pred hhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 304 RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN 383 (518) Q Consensus 304 ~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~ 383 (518) .+- +.. .-.+......+..+... . +..++.+++++.++++.+.++.+.+.|...++.+.-++.--+ T Consensus 278 g~~-----~~~---~~~~~~~~~~~~~i~~~--~----~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~ 343 (474) T protein:vir:94 278 GYE-----GED---LEEFMRGLKYYKAINVD--G----DGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKFG 343 (474) T ss_pred cCC-----ccc---chhhhhhhhccceeecc--C----CCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccc Confidence 431 100 01122222333333321 1 234788999999999999999999999988876543332223 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 384 REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNN 463 (518) Q Consensus 384 ~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~ 463 (518) +..||.++++..+.+..++..++..++.+|+++++.|+.+.. ...+...+.|+|.+.++.|..+.++.++ T Consensus 344 ~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~---------~~~d~~~i~v~f~~~~p~~~~e~a~~~~- 413 (474) T protein:vir:94 344 SAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNN---------LKTDVKDIEISFNFNRMMNDAEQSQIIA- 413 (474) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcccceeeEEeccCcccCHHHHHHHHH- Confidence 557999999999999999999999999999999999877642 2233457899999999999888888654 Q ss_pred HHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 464 MNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 464 ~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+|+||.++++++ +|..++ +++|++||++|+.......|. ++..+..++ T Consensus 414 --~~g~iS~et~l~~-l~~v~D--~~~E~eri~~E~~~~~~~~~~-~~~~~~~~~ 462 (474) T protein:vir:94 414 --QSQYLSRETLVKS-SPLVDD--YKAELERIEQEQMEYNKQLPN-LDDGGADGA 462 (474) T ss_pred --HcCCCCHHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHhhccc-cCCCCCCCc Confidence 4699999999977 566655 557899999988654322222 111222222 No 21 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=100.00 E-value=7.4e-46 Score=268.01 Aligned_cols=449 Identities=9% Similarity=0.005 Sum_probs=280.7 Q ss_pred CCc-CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGV-WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~-~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) =.+ -..|..+|..... ....++.+..+.|.+.+....+ -+......+....++++|+|+.|++..|++ T Consensus 20 ~~l~~~~i~~li~~~~~-----~~~~r~~~l~~YY~g~~~~i~~------~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~ 88 (506) T protein:vir:94 20 ENLTPNKIMKFITHHFN-----YQRPRLEMLDDYYQGYNLKILD------KQSRRHEDGKADHRATHSFAKYIADFQTSY 88 (506) T ss_pred hcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCccccc------cccccccccCCcceeecchHHHHHHHhhhh Confidence 001 1122333322211 0111222222223232211100 011112334456789999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g 158 (518) ||++|++++.. ++.+++.|++++++|+|...+.+....+++.|.+++++|++ +|++++.+++|.+++|+|+++ T Consensus 89 l~G~p~~~~~~------d~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~~i~~~~p~~~~~v~dd~ 162 (506) T protein:vir:94 89 SVGNPINVKLP------DDGSNSGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGEDNEEHLAKLDPLDTFVIYSTD 162 (506) T ss_pred hcccCceeecC------cchHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEecCC Confidence 99999998753 45678899999999999999999999999999999999997 589999999999999999864 Q ss_pred c---EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 159 E---PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 159 ~---~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) . ++.++.+......+...+.+...+++ .++...+.. |...... +.. T Consensus 163 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~yt~~~~~~--~~~~~~~------------------~~~-- 211 (506) T protein:vir:94 163 VDPKPIMAVRYHQIELVDDNQVSTINYVPE---------TWTADTYTL--YNPTPIM------------------GKM-- 211 (506) T ss_pred CCCceEEEEEEEeeeeccCCceeEEEEEEE---------EEeCceEEE--eccccCc------------------cce-- Confidence 3 44333322222222222333333332 111111211 2111100 000 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCC---- Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVN---- 311 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~---- 311 (518) .....++....++++++| ++.|+|+|.+.++++|++|..+|++++.++.....+.+-......... T Consensus 212 -~~~~~~~~g~vPvv~~~n---------~~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 281 (506) T protein:vir:94 212 -QVDTTKPITTFPVVEFKN---------SNFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDM 281 (506) T ss_pred -eccccccCCccceEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhc Confidence 001123443333333343 234999999999999999999999999988655555444332211110 Q ss_pred ----------CC--ccccccCCCcchhheeeecCCc---CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCc Q lcl|Aclame:pro 312 ----------KS--TDKEEWSMNVDEDYFMQFKGTL---DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNP 376 (518) Q Consensus 312 ----------~~--~~~~~~~~d~d~~~~~~~~~~~---~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~ 376 (518) +. .......+..+.+....+.... ..+......++++++++.++++...++.+.+.|...++.+. T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 361 (506) T protein:vir:94 282 MNTIDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPD 361 (506) T ss_pred cccccccccccccccccchhHHHhhhhhcCeeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCccc Confidence 00 0000001111111111111111 11223345688999999999999999999999999998875 Q ss_pred cccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHH Q lcl|Aclame:pro 377 ATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNE 456 (518) Q Consensus 377 ~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~ 456 (518) -++.-.++..||.++++..+.+.+++++++..++++|+++++.|+.+.+... +.......+++|.|++.++.|..+ T Consensus 362 ~~~~~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~----~~~~~d~~~i~i~f~~~~p~d~~e 437 (506) T protein:vir:94 362 LTDENFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSIH----GDWTFDPQELTFTFRDNLPADNIS 437 (506) T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CccccccccceEEeCCCCCcCHHH Confidence 4443223567999999999999999999999999999999999998875432 222333456899999999999999 Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 457 LSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 457 ~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+++++++ +|+||.++++.+ +|.+++ +++|++||++|+..... ..... +..++.+ T Consensus 438 ~a~~~~kl--~g~iS~et~~~~-lp~v~d--~~~E~~ri~~E~~~~~~-~~~~~-~~~~~~~ 492 (506) T protein:vir:94 438 QIKALVQA--GATLPQKYLYQQ-LPGVTN--PQDIVDMMKEQSANGDY-SFDQN-GVISNDG 492 (506) T ss_pred HHHHHHHH--hccCChHHHHHh-CCCCCC--HHHHHHHHHHHHHHHhh-cchhh-cCCCccc Confidence 99999887 599999999986 576665 45789999999865432 22222 2233333 No 22 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=100.00 E-value=2.7e-45 Score=264.94 Aligned_cols=451 Identities=11% Similarity=0.066 Sum_probs=289.7 Q ss_pred CCcCc-hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWS-VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~-~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) +-++- .+..+|+.|- .....++.+..+.|.+...-..+. ....+....+++++|+|+.|++..|++ T Consensus 13 ~~~~~~~~~~~i~~~~-----~~~~~r~~~~~~yy~g~~~i~~~~--------~~~~~~~~~~ki~~n~~~~iv~~~~~~ 79 (489) T protein:vir:99 13 SKLWIDQLKNYISRFK-----AEQLERLKELKRYYLGDNNIKYRP--------AKTDKYAADNRIASDFAKYITVFEQGY 79 (489) T ss_pred CCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHhcccCcccccc--------ccccccCCcceeecchHHHHHHHHhhh Confidence 44432 2556666652 122334444445555543222111 112234455689999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-----CCeEEEEEEcCCeeEEE Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-----NGRPSISVHSSSQFWID 154 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-----~~~i~i~~v~ad~~~P~ 154 (518) +|+++++++. +++.+++.|+.++++|+|...+.+....+++.|.++..+|+. +++++|.+++|.+++|+ T Consensus 80 l~g~~~~~~~------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~~~v 153 (489) T protein:vir:99 80 MLGVPVEYKN------ENKDLQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQTFVI 153 (489) T ss_pred hccCCceeec------CChhHHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccceEEE Confidence 9999999875 356678999999999999999999999999999999998862 46899999999999999 Q ss_pred EEcC---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 155 FKNN---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 155 ~~~g---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) |++. +...++.......++.+ .+.+.+.+. +..|.. |+....... T Consensus 154 ~dd~~~~~~~~~i~~~~~~~~~~~-~~~~~~~y~------------~~~i~~--~~~~~~~~~----------------- 201 (489) T protein:vir:99 154 YDDTYQRNSLMAVHFYDIDYGSGK-RKQIIKAYT------------SDTIYT--YEDYNLETK----------------- 201 (489) T ss_pred EcCCCCCceEEEEEEEEEecCCCc-eEEEEEEEe------------CCcEEE--EEecCCCcc----------------- Confidence 9864 34444433222222222 122333332 222222 222111000 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCC Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVN 311 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~ 311 (518) +.......+++...++++.++| + +.|.|+|.+.++++|++|.++|+++++++....++.+-..+.....+ T Consensus 202 -~~~~~~~~~~~~g~vPvv~~~n----~-----~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~~~~~ 271 (489) T protein:vir:99 202 -GMRLKDYEGHFFKGVPVNEYAN----N-----EERTGAYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGNAYTGAD 271 (489) T ss_pred -cceecccccccCCceeEEEeec----C-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCccccc Confidence 0000111234444444444443 2 35999999999999999999999999998776666554443222111 Q ss_pred CCcc----------ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 312 KSTD----------KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNL 381 (518) Q Consensus 312 ~~~~----------~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~ 381 (518) .... ........+......+....+ ..+....++++++++.++.+...++.+.+.|...++.+.-.+.- T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~ 350 (489) T protein:vir:99 272 ENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPN-PNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQDMK 350 (489) T ss_pred chhhhhhcccccccccccccccccceeeeeccccC-ccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCccccccc Confidence 1100 000011111111122221111 12223457889999999999999999999998888776433322 Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 382 GNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTL 461 (518) Q Consensus 382 d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~ 461 (518) -++..||.++++..+.+.+++.+++..++.+|+++++.|+.+.+....... ......+++|.|+++++.|..+.++.+ T Consensus 351 ~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~--~~~~~~~i~v~f~~~~p~d~~~~~~~~ 428 (489) T protein:vir:99 351 FSGVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEAT--TYSLVNDTSIVFTPNLPQNDNEIVTAA 428 (489) T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--cccccccceEEeCCCCCcCHHHHHHHH Confidence 235579999999999999999999999999999999999888654322111 111223589999999999999999999 Q ss_pred HHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccC-CCCchhccCcCCCC----C Q lcl|Aclame:pro 462 NNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGE-VPDPEAIGGMETKG----G 518 (518) Q Consensus 462 ~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~-~~dp~~~~~~~~~g----G 518 (518) ++++ |+||.++++++ .|.++++++++|++||++|+.... .+++...|..++.. + T Consensus 429 ~kl~--giis~et~~~~-l~~v~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (489) T protein:vir:99 429 QNLY--GIVSDQTIFEI-LNTVTGVDAEAELKRLKEEADKKQSLPEPRLVGDASGQEEPTAE 487 (489) T ss_pred HHHh--ccCCHHHHHHh-cCCCCchhHHHHHHHHHHHHHHHhccccccccCCCCCCcCCCCC Confidence 9874 99999999977 578888899999999998875532 23333222211111 1 No 23 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=100.00 E-value=2.8e-45 Score=264.84 Aligned_cols=440 Identities=13% Similarity=0.053 Sum_probs=290.2 Q ss_pred CCc-CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGV-WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~-~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) +.. +--+.++|..|-. ....++.+..++|.+......+. ......+...+++++|+|+.|++..+++ T Consensus 37 ~~~~~~~i~~~i~~~~~-----~~~~r~~~~~~yY~g~~~~i~~~-------~~~~~~~~~~~ri~~n~~k~Ivd~~~~y 104 (501) T protein:vir:96 37 MVNNWELLKNFINHHKL-----RQAPRIQELLDYARGENHDVLKS-------GRRKDNEMADKRAVHNYGRMISKFKTGY 104 (501) T ss_pred cCChHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCcccCc-------cccCccccccceeecchHHHHHHHHhhh Confidence 221 1226666666631 22234444445555532211000 1122344556789999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g 158 (518) +|++|+++++.. ..+++.+++.|++++++|+|...+.+++..+++.|.+++.+|.+ +|+++|.+++|.+++|+|++. T Consensus 105 l~g~p~~~~~~~--~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~v~d~~ 182 (501) T protein:vir:96 105 LAGNPIRVEYDD--NDDNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNS 182 (501) T ss_pred hcccCeeEeeCC--ccchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEccceeEEEEcCC Confidence 999999887753 34567789999999999999999999999999999999999997 688999999999999999864 Q ss_pred ---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 159 ---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 159 ---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) ++..++........+.. .++.+.+. ...|.+ |...++ .. T Consensus 183 ~~~~~~~~v~~~~~~~~~~~--~~~~~vyt------------~~~i~~--~~~~~~--~~-------------------- 224 (501) T protein:vir:96 183 LEDNSIAAVRYYNRGTLQSA--KDVVEIYT------------DEHIYT--LDASDD--FN-------------------- 224 (501) T ss_pred CCCceEEEEEEEEeecCCCc--EEEEEEEc------------CCcEEE--EeeCCC--ce-------------------- Confidence 44444433222222221 12222221 112211 221111 00 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcc Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTD 315 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~ 315 (518) +....+++...+++++++| +|.|+|+|.++++++|++|.++|++++.++....++.+...+........+ T Consensus 225 ~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~~- 294 (501) T protein:vir:96 225 EISVTTHAFGTVPITEYLN---------NIDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQA- 294 (501) T ss_pred eccccccCCCccceEEecC---------CccCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCcccch- Confidence 0001233444333444332 356999999999999999999999999998877777766555322111100 Q ss_pred ccccCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHH Q lcl|Aclame:pro 316 KEEWSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSL 394 (518) Q Consensus 316 ~~~~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~ 394 (518) .+........+.... ..+...+..++.+++++..+.+...++.+.+.|...++.+.-.++-.++..||.++++. T Consensus 295 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~ 369 (501) T protein:vir:96 295 -----SDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTPDMSDTNFSGNTSGEALKYK 369 (501) T ss_pred -----hhhhhcCeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHHHHHH Confidence 111111101111110 01222334578889999999999999999999988888776555433456799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 395 QDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEE 474 (518) Q Consensus 395 ~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~ 474 (518) .+.+.+++..+++.++.+|+++++.|+.+..... .+.......|.|.|++.++.|..+.++.+++++ |++|.++ T Consensus 370 ~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~----~~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl~--g~iS~et 443 (501) T protein:vir:96 370 LFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVN----EFKDFDESLLKITFTPNLPKSLNEQVSILTGLG--GQVSQET 443 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCchHH Confidence 9999999999999999999999999988765432 122233346899999999999999999999884 8999999 Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 475 KVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 475 ~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++++ +|.+++ +++|++||++|+...... ...+.++...| T Consensus 444 ~~~~-l~~v~D--~~~E~~ri~~E~~~~~~~--~~~~~~~~~~~ 482 (501) T protein:vir:96 444 ALSL-SGLVES--PNEELDKINKEMSEIDFK--GYSNDFNEHVG 482 (501) T ss_pred HHHh-CCCCCC--HHHHHHHHHHHHHHhhcc--ccccchhhccc Confidence 9987 466665 567899999887654221 11223333333 No 24 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=100.00 E-value=1.8e-45 Score=265.83 Aligned_cols=440 Identities=15% Similarity=0.052 Sum_probs=279.9 Q ss_pred CC--cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccC-CCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MG--VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQG-YVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~--~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~l~~~i~~~~A 77 (518) .| ..--|...|+.|- .+..++.+..+.|.+.+.-.++. ...+.+. ...+....++++|+++.|++..| T Consensus 23 ~~~~~~~~i~~~i~~~~------~~~~r~~~~~~Yy~g~~~i~~~~---~~~~~~~~~~~~~~~~ki~~n~~k~ivd~~~ 93 (478) T protein:vir:10 23 KYETQEEMILRLVREHK------ENIDNITMGERYYNHHPDILDAP---FKRDVNGDYDETKPDWRMYTNYHQNLVDQKV 93 (478) T ss_pred ccCChHHHHHHHHHHHH------HHHHHHHHHHHHhcccccccccc---hhhhcccccccccccceeccchHHHHHHHHh Confidence 11 1112223333331 11222333333344332211111 0111111 12344556889999999999999 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEE Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFK 156 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~ 156 (518) +++|++|+++++ +++.+++.|+.+++ |+|...+.+++..+++.|.+++++|++ ++++++.+++|.+++|+|+ T Consensus 94 ~yl~g~p~~~~~------~~~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~~~~~~p~~~~~v~d 166 (478) T protein:vir:10 94 AYAVANPVTFGV------DNDKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRVPAEQAVPIWT 166 (478) T ss_pred hhhcccCceeec------CChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEEEc Confidence 999999999875 34567888988874 899999999999999999999999998 5799999999999999998 Q ss_pred cC---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 157 NN---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 157 ~g---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) ++ +++.++.. ....+.. +.|.| .+..|.+ |+..++..... ..... .....+ T Consensus 167 ~~~~~~~~~~ir~--~~~~~~~----~~~~y------------~~~~i~~--~~~~~~~~~~~--~~~~~--~~~~~~-- 220 (478) T protein:vir:10 167 NKERDELQAFIRV--YELDGAE----RVEYW------------TKDDVTF--YELKEGQLIPD--FYRSE--DHIQPH-- 220 (478) T ss_pred CCCCCceEEEEEE--EeeeCce----EEEEE------------eCCcEEE--EEecCCeeecc--ccccc--cccccc-- Confidence 64 44443322 2222211 11222 2333433 22222111100 00000 000000 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKS 313 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~ 313 (518) ......+++....+++.++| ++.|+|+|++.+++||++|.++|++++.++....++.+...+-..+ T Consensus 221 -~~~~~~~~~~g~vPvv~~~n---------~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~~~~---- 286 (478) T protein:vir:10 221 -YYQGNKLMSWGRVPFIPFKN---------NPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGED---- 286 (478) T ss_pred -eecccccccCCcceEEEecc---------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCCccc---- Confidence 00111234554444444443 3469999999999999999999999999988777777654431110 Q ss_pred ccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHH Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWS 393 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s 393 (518) . -.+......+..+..... .+..++.+++++.++++...++.+.+.|...++.+.-+++-.++..||.+++. T Consensus 287 -~---~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Ai~~ 358 (478) T protein:vir:10 287 -M---KDFMHNLKYYKAISVAGE----SGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKF 358 (478) T ss_pred -c---cchhhhhhhCceeEecCC----CCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcCccccccchHHHHHHH Confidence 0 011122222333322211 22347889999999999999999999999888765434332345679999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVE 473 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~ 473 (518) ..+.+..++..++..++.+|+++++.|+.+.. ......+|+|.|++.++.|..+.++.++++ +|+||.+ T Consensus 359 ~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~---------~~~d~~~i~i~f~~~~p~~~~e~~~~~~~~--~g~iS~e 427 (478) T protein:vir:10 359 MYSNLDLKANKLKNKTLTALQELLQYIIDFYR---------LDVRVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKE 427 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcccccceEEeCCCCCCCHHHHHHHHHHH--hCCCChH Confidence 99999999999999999999999998876542 223345789999999999999999998765 6999999 Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCC-------CCC Q lcl|Aclame:pro 474 EKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMET-------KGG 518 (518) Q Consensus 474 ~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~-------~gG 518 (518) +++++ +|..++ +++|++||++|+.......+...++.+. ++| T Consensus 428 t~i~~-~~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~d~~ 476 (478) T protein:vir:10 428 TILGN-HSWVQD--PVAEMERIEQENIELNQQLPDIEEGLNDEQQRQSEDNQ 476 (478) T ss_pred HHHHh-CCCCCC--HHHHHHHHHHHHHHHHHhccccCCCCcccccccCcCCC Confidence 99976 565654 6789999999988765554544433322 111 No 25 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=100.00 E-value=3.6e-45 Score=264.27 Aligned_cols=440 Identities=13% Similarity=0.055 Sum_probs=288.0 Q ss_pred CCc-CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGV-WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~-~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) +.. +-.|..+|..|-. ....++.+..+.|.+......+. .....+....+++++|+|+.|++..+++ T Consensus 37 ~~~~~~~l~~~i~~~~~-----~~~~r~~~l~~yY~g~~~~i~~~-------~~~~~~~~~~~ki~~n~~k~Ivd~~~~y 104 (501) T protein:vir:27 37 MVNNWELLKNFINHHKL-----RQAPRIQELLDYARGENHDVLQF-------GRRKDREMADKRAVHNYGRMISKFKTGY 104 (501) T ss_pred ccccHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcccccc-------CccCccccccceeccchHHHHHHHHhhh Confidence 222 1235666655521 12233334444444432111000 0112234456688999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g 158 (518) +|++|++++.. +...++.++++|+++++.|+|...+.+++..+++.|.+++.+|.+ +|+++|.+++|.+++|+|++. T Consensus 105 l~g~p~~~~~~--d~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~~i~~~~p~~~~~v~d~~ 182 (501) T protein:vir:27 105 LAGNPIRVEYD--DNDNNSQNDDTIKRIGRINDIDSHNRTLIRDLSQTGRAYEVIYRNEYDETRIKRLNPLETFVIYDNS 182 (501) T ss_pred hcccCeeEecC--CccchHHHHHHHHHHHHhcChhHHHHHHHHHHhhCCeEEEEEEeCCCCceEEEEEccceeEEEecCC Confidence 99999888764 334567788999999999999999999999999999999999997 578999999999999999874 Q ss_pred ---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 159 ---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 159 ---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) +...++........+.. .++.|.+. ...|.+ |...++. . T Consensus 183 ~~~~~~~~ir~~~~~~~~~~--~~~~~vyt------------~~~v~~--~~~~~~~-------------------~--- 224 (501) T protein:vir:27 183 LEDNSIAAVRYYNRGTLQNA--KDVVEIYT------------NEHIYT--LDASDDF-------------------N--- 224 (501) T ss_pred CCCceEEEEEEEEeeecCCc--EEEEEEEe------------CCeEEE--EEeCCce-------------------e--- Confidence 33333332222222222 22233322 122211 2222110 0 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcc Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTD 315 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~ 315 (518) +....+++...+++++++| ++.|+|+|++++++||++|.++|++++.++....++.+...+........+ T Consensus 225 ~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~- 294 (501) T protein:vir:27 225 EISVTTHAFGTVPITEFLN---------NVDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQA- 294 (501) T ss_pred eccccccCCCcccEEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCcccch- Confidence 0011234444444444443 246999999999999999999999999999888888776665322211110 Q ss_pred ccccCCCcchhheeeecCC-cCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHH Q lcl|Aclame:pro 316 KEEWSMNVDEDYFMQFKGT-LDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSL 394 (518) Q Consensus 316 ~~~~~~d~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~ 394 (518) .+.+......+... ...+...+..++.+++++.++.+...++.+.+.|...++.+.-+++-.++..||.+++.. T Consensus 295 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~ 369 (501) T protein:vir:27 295 -----SDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPDMSDTNFSGNTSGEALKYK 369 (501) T ss_pred -----hhhhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCCcccCccccccCchHHHHHHH Confidence 01111111111111 111223344578899999999999999999999988888765454433456799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 395 QDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEE 474 (518) Q Consensus 395 ~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~ 474 (518) .+.+.+++..+++.++.+|+++++.|+.+..... .+.......|.|.|++.++.|..+.++.++++ +|++|.++ T Consensus 370 ~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~----~~~~~d~~~i~v~f~~~~p~n~~e~ad~~~kl--~g~iS~et 443 (501) T protein:vir:27 370 LFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVN----EFKDFDESLLKITFTPNLPKSLNEQVSILTGL--GGQVSQET 443 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHH Confidence 9999999999999999999999999988765322 12223345689999999999999999999887 59999999 Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 475 KVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 475 ~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++++ +|..++ +++|++||++|+..... ....++++...| T Consensus 444 ~l~~-l~~v~D--~~~E~eri~~E~~e~~~--~~~~~~~~~~~~ 482 (501) T protein:vir:27 444 ALSL-SGLVES--PNEELDKINKEVSEIDF--KGYSNDFNEHVG 482 (501) T ss_pred HHHh-CCCCCC--HHHHHHHHHHHHHhhhH--hhhcCccccccc Confidence 9976 566654 56789999988754321 112223333222 No 26 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=100.00 E-value=2.5e-45 Score=265.14 Aligned_cols=454 Identities=8% Similarity=-0.013 Sum_probs=281.7 Q ss_pred CCcCchHHHHHHHHhcCCCCh-----------------------hhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNG-----------------------SEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP 57 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~-----------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 57 (518) .-+.-++..+++-=+++.+.- ....++.+..+.|.+.++-..+. ...... T Consensus 11 ~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~-------~~~~~~ 83 (511) T protein:vir:99 11 TDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVEL-------TRRKEE 83 (511) T ss_pred hhhhhhhhhhhhhhhCCccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCcccccc-------Cccccc Confidence 111122222232222221110 01112222222233322211110 011223 Q ss_pred ccccceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE Q lcl|Aclame:pro 58 TVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL 137 (518) Q Consensus 58 ~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d 137 (518) ...++++++|+|+.|++..+++||++|++++. +++.+++.|++++++|+|...+.+.+..+++.|.+++.+|.+ T Consensus 84 ~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~d 157 (511) T protein:vir:99 84 YMADNRVAHDYASYISDFINGYFLGNPIQYQD------DDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRN 157 (511) T ss_pred ccCcceeecchHHHHHHHHHhhhcccCceeec------CchHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeC Confidence 34567899999999999999999999999975 355678999999999999999999999999999999999996 Q ss_pred -CCeEEEEEEcCCeeEEEEEcCc---EEEEEEEEEEEe---cCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccC Q lcl|Aclame:pro 138 -NGRPSISVHSSSQFWIDFKNNE---PFRFNFFEEIPT---SNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDG 210 (518) Q Consensus 138 -~~~i~i~~v~ad~~~P~~~~g~---~~~~~f~~~~~~---~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~ 210 (518) +|++++.+++|.+++|+|+++. +..++.+..... .+.+.+ ++.|.+ .+..|.+ |+.++ T Consensus 158 ed~~~~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~~~-~~~~vy------------t~~~i~~--~~~~~ 222 (511) T protein:vir:99 158 QDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEV-FTVDLF------------TSHGVYR--YLTSR 222 (511) T ss_pred CCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceE-EEEEEE------------eCCcEEE--EEecC Confidence 6899999999999999998753 333322211111 111111 222332 2333333 23222 Q ss_pred CccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 211 DKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR 290 (518) Q Consensus 211 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~ 290 (518) ....... ..+....+++...+++++++| ++.|.|+|++++++||++|.++|++++ T Consensus 223 ~~~~~~~----------------~~~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~ 277 (511) T protein:vir:99 223 TNGLKLT----------------PRENGFESHSFERMPITEFSN---------NERRKGDYEKVITLIDLYDNAESDTAN 277 (511) T ss_pred Ccccccc----------------ccccccccCCCCccceEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 2111100 000112234444444444443 246999999999999999999999999 Q ss_pred HHHhccceeeechhhhccCCCCCcc-ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 EGEKTKTKIAASERMFRKKVNKSTD-KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAV 369 (518) Q Consensus 291 e~~~g~~ri~v~~~~l~~~~~~~~~-~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~ 369 (518) .++....++.+-..+...+...... .....+......+....+ ........++.+++++.++.+...++.+.+.|. T Consensus 278 ~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~ 354 (511) T protein:vir:99 278 YMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEG---RETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIH 354 (511) T ss_pred HHHHhhchhhhhccCcccCchhhcccccccceeccccccccccc---ccCCCCcceeEEeecCCHHHHHHHHHHHHHHHH Confidence 9988777766655543222111000 000011111111111111 112233457889999999999999999999998 Q ss_pred HHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCC Q lcl|Aclame:pro 370 SKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDP 449 (518) Q Consensus 370 ~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~ 449 (518) ..++.+.-+++--++..||.+++...+.+..++..++..++.+|+++++.|+.+...... .........++|.|.+. T Consensus 355 ~~s~~P~~~~~~~~gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~---~~~~~~~~~i~i~f~~~ 431 (511) T protein:vir:99 355 MFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS---IDVSKDFNTVRYVYNRN 431 (511) T ss_pred HHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccccccccceEEeCCC Confidence 888776555532235679999999999999999999999999999999999887654321 11122234689999999 Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCC-chhccCc-CCCCC Q lcl|Aclame:pro 450 MSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPD-PEAIGGM-ETKGG 518 (518) Q Consensus 450 i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~d-p~~~~~~-~~~gG 518 (518) +|.|..+.++.++++. |++|.++++++ +|..++ +++|++||++|+....... ....... +...+ T Consensus 432 ~p~n~~e~~~~~~kl~--GiiS~et~l~~-l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 497 (511) T protein:vir:99 432 LPKSLIEELKAYIDSG--GKISQTTLMSL-FSFFQD--PELEVKKIEEDEKESIKKAQKNMYQDPRNINDD 497 (511) T ss_pred CCcCHHHHHHHHHHHh--ccCCHHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHhhcccccCCCCCCC Confidence 9999999999998874 99999999987 576665 6788999999876432111 1001111 11111 No 27 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=100.00 E-value=1.1e-44 Score=261.61 Aligned_cols=459 Identities=11% Similarity=0.040 Sum_probs=288.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhh--hccCCCCccccceecCchHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSL--WAQGYVPTVHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--w~~~~~~~~~~~~~~~~l~~~i~~~~A~ 78 (518) |= -=.|+..|+.+..-.. ..+.++.+..+.|.+...-..+....... -++....+....++++|+++.|++..|+ T Consensus 1 ~~-~~~~~~~i~~~~~~~~--~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~ 77 (470) T protein:vir:10 1 ME-LDALKKLIQNTSTSRN--DLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAG 77 (470) T ss_pred Cc-hHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhccccchhcccccccccccccCCcccccchHHHHHHhhhh Confidence 11 1123444554443211 11122222233444432211111000000 0112234455678999999999999999 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEc Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN 157 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~ 157 (518) +||+.|+++++. ++.+++.|++++. ++|...+.+....++..|.+++.+|++ ++++++..++|.+.+|+|++ T Consensus 78 yl~G~p~~~~~~------d~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~~~~~~~p~~~~~v~d~ 150 (470) T protein:vir:10 78 YVASVFPDIDVG------KDADNKKIIDVLG-DDRALTLNGLLVDSSNAGRAWLHYWIDEDGNFRYGIIQPDQITPIYAT 150 (470) T ss_pred heeccceeeecC------chHHHHHHHHHHh-hhHHHHHHHHHHHHhhcCeeEEEEEecCCCceEEEEEcccceEEEEcC Confidence 999999998863 4456778888886 468888889999999999999999997 57899999999999999986 Q ss_pred ---CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccC Q lcl|Aclame:pro 158 ---NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) Q Consensus 158 ---g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (518) ++++.++.+-.....+....+++.|.|. ...|.+....+... .......... ........+. T Consensus 151 ~~~~~~~a~ir~y~~~~~~~~~~~~~~e~yt------------~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~ 215 (470) T protein:vir:10 151 TLDNKLLGILRSYKQLDPDSGKYFTVHEYWT------------DKEAQFFRTNATDS--TVIEPYNIIT-SYDLSAGYET 215 (470) T ss_pred CCCCceEEEEEEEEeeecCCceEEEEEEEEc------------CCcEEEEEeecCcc--eecccccccc-cccccccccc Confidence 4566555333333233333344555553 23344433332221 1111000000 0001111111 Q ss_pred cccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCc Q lcl|Aclame:pro 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKST 314 (518) Q Consensus 235 ~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~ 314 (518) ......+++....+++.++| ++.|+|+|.+.+++||++|..+|++++.++.....+.|-.++--.+ T Consensus 216 ~~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~----- 281 (470) T protein:vir:10 216 GQSNTLKHNFGRVPFIEFSK---------NKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGAD----- 281 (470) T ss_pred ccccccccCCCeeeEEEeec---------CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCccc----- Confidence 12223345554444444443 2359999999999999999999999999987666555544431100 Q ss_pred cccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSL 394 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~ 394 (518) ...+..+...+..+.... .+.+....++.++++++++.+...++.|.+.|...++.+..++. ..+..|+.+++.. T Consensus 282 ---~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~-~~gn~Sg~Alk~~ 356 (470) T protein:vir:10 282 ---LHQFMNDLRKYKSIKINN-TGNGDNSGVDKLQIDIPVEARDDALKITRKNIFLFGQGIDPANF-ESSNASGVAIKML 356 (470) T ss_pred ---cchhhhhhhhcCeEeccC-CCCCcCceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCCCCcc-ccccchHHHHHHH Confidence 001222223333333322 22333456899999999999999999999999888876643332 2246899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 395 QDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEE 474 (518) Q Consensus 395 ~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~ 474 (518) .+.+..++.+++..|+++|+++++.|+.+... ...+...+.|.|.+.++.|..+.+++++++ +|+||.++ T Consensus 357 ~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~~--------~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~et 426 (470) T protein:vir:10 357 YSHLELKAAKTQTYFEHAINELVRAIMRYLNF--------SDADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSKEA 426 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCcccceeeEEeccCCCCCHHHHHHHHHHH--hccCcHHH Confidence 99999999999999999999999999876421 122345789999999999999999998876 59999999 Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 475 KVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 475 ~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++++ +|..++ +++|++||++|+....+..+ .....++ +| T Consensus 427 ~l~~-~p~v~D--~~~E~eri~~E~~e~~~~~~-~~~~~~~-~~ 465 (470) T protein:vir:10 427 VAKA-NPIVDD--WQQELKDLAKDKEENDPYSN-QADELNG-KG 465 (470) T ss_pred HHHh-CCCCCC--HHHHHHHHHHHHHHHHHhhc-cccccCC-CC Confidence 9976 575554 67899999988765432111 1111111 22 No 28 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=100.00 E-value=2.1e-44 Score=259.99 Aligned_cols=436 Identities=14% Similarity=0.049 Sum_probs=281.7 Q ss_pred CCcC-----chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHH Q lcl|Aclame:pro 1 MGVW-----SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~~~-----~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~ 75 (518) |... ..|.++|+.+-. +...++.+..+.|.+.+. .+.+...+.....++++|+|+.|++. T Consensus 19 ~~~~~~~~~~~i~~~i~~~~~-----~~~~~~~~l~~Yy~g~~~----------i~~~~~~~~~~~~ki~~n~~~~Ivd~ 83 (470) T protein:vir:99 19 FPKGEKLTSNELLGFIAYNET-----VLKPRYRENMKLYLGKHK----------ILTAPEKETGADNRIVVNSAKYVVDV 83 (470) T ss_pred eCCCCCcCHHHHHHHHHHHHH-----hhHHHHHHHHHHhccccc----------cccCcccccCCcceeecchHHHHHHH Confidence 3322 124555544421 122233333333433321 11222334555678999999999999 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWID 154 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~ 154 (518) .|+++|++|+++++. +|...++.|++++++|+|...+.+++..+++.|.+++.+|.+ +|++++.+++|.+++|+ T Consensus 84 ~~~~l~g~p~~~~~~-----~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~~p~~~~~i 158 (470) T protein:vir:99 84 YNGYFCGIEPKLALL-----NDSSKIDEIARWNRQENFFDTINEISKQCDIFGRSIASIYQGEDARPHLMYSSPNHAFII 158 (470) T ss_pred HhhhhccCCeeEeeC-----CchhHHHHHHHHHHhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeEEEEEEccceeEEE Confidence 999999999998864 244556788999999999999999999999999999999996 67899999999999999 Q ss_pred EEcCc---EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 155 FKNNE---PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 155 ~~~g~---~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) |++.. ...++.+.....+++...|..+.+. .++. .|...+... T Consensus 159 ~d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~------------------ 204 (470) T protein:vir:99 159 YDDTVQRQPLAFVHYQIDNSNNWTDAYGVIQYA--------------DKFY--KFKGYDIEE------------------ 204 (470) T ss_pred EcCCCCcceEEEEEEEEEecCCeeEEEEEEEec--------------CeEE--EEEeccccc------------------ Confidence 98743 2333333222223322222222111 1111 111111000 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCC Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVN 311 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~ 311 (518) +.......+++...++++.++| ++.|+|+|+++++++|++|.++|++.+.++....++.+-..+-..... T Consensus 205 -~~~~~~~~~~~~g~vPvv~~~n---------~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~ 274 (470) T protein:vir:99 205 -DTNAAGYAINPYGLVPAVEFFE---------NEERQGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMIGFKLPEDD 274 (470) T ss_pred -ccccccccccCCCccceEeecC---------CCCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccccc Confidence 0000011223443333333333 346999999999999999999999999999877666665544222111 Q ss_pred CCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHH Q lcl|Aclame:pro 312 KSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEI 391 (518) Q Consensus 312 ~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi 391 (518) . + . ...+........+.. .+.+....++.+++++..+.+...++.+.+.|...++.+..+++-.++..||.++ T Consensus 275 ~-g-~--~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Ai 347 (470) T protein:vir:99 275 E-G-N--PKFDFKNNRVLYVSQ---LDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKNFAGNSSGVAL 347 (470) T ss_pred c-c-c--hhhhhhhcceeeecC---CCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCccccccccccCchHHHH Confidence 0 0 0 111111121112221 1223344578899999999999999999999999998876555433456799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMS 471 (518) Q Consensus 392 ~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S 471 (518) ++..+.+..++.+++..++.+|+++++.++.+.... +.......+++|.|.+.++.|..+.++.+++++ |++| T Consensus 348 ~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-----~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~--giis 420 (470) T protein:vir:99 348 QYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNN-----KQDQELWSELDFKFTRNLPEDMASAIDNAKNAE--GIVS 420 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCcccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCC Confidence 999999999999999999999999999988775422 122334457999999999999999999999875 8999 Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccccCC-----CCchhccCcCCCCC Q lcl|Aclame:pro 472 VEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEV-----PDPEAIGGMETKGG 518 (518) Q Consensus 472 ~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~-----~dp~~~~~~~~~gG 518 (518) .+++++++ |..+ +++|++||++|+..... ..+.+.++.++.+. T Consensus 421 ~et~l~~l-~~vd---~~~E~eri~~E~~~~~~~~~~~~~~~d~~~~d~~~e 468 (470) T protein:vir:99 421 KKTQLGMI-PDIE---PDAEMKQIAKEKADAIKQTQQLSMPIDILKRDNNAE 468 (470) T ss_pred HHHHHHhC-CCCC---HHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCcc Confidence 99999874 5542 56789999988653211 11111222222222 No 29 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=100.00 E-value=4.3e-44 Score=258.36 Aligned_cols=441 Identities=10% Similarity=0.027 Sum_probs=280.0 Q ss_pred CCc-Cc---------------------------hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhc Q lcl|Aclame:pro 1 MGV-WS---------------------------VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWA 52 (518) Q Consensus 1 ~~~-~~---------------------------~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 52 (518) |-| +| .|.++|+.|- .....++.+..++|.+......... .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~-----~~~~~~~~~~~~yY~g~~~~i~~~~--~~--- 70 (481) T protein:vir:10 1 MTVYTINNINTKFSPLANDDFVVSDLAELLKEENLRNFISRHQ-----TEQVPRLEMLESYYLNRNTDILAGE--RR--- 70 (481) T ss_pred CeeEeeehhchhcccccCceeeeecchhhcCHHHHHHHHHHHH-----HHHHHHHHHHHHHhcCCCcccccCc--cc--- Confidence 111 11 1233333331 0112222233333333221110000 00 Q ss_pred cCCCCccccceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEE Q lcl|Aclame:pro 53 QGYVPTVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAV 132 (518) Q Consensus 53 ~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~ 132 (518) .........+++++|+|+.|++..|+++|++++++++. ++.+++.|++++++|+|...+.+++..+++.|.+++ T Consensus 71 ~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~------d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~ 144 (481) T protein:vir:10 71 LQKYGDKADHRAVHNYAKYVSRFIVGYLTGNPITITHQ------DNQTNDKIIELNDLNDADEVNSDLALNLSIYGRAYE 144 (481) T ss_pred cccccccccceeecchHHHHHHHHHhhhccCCceEecC------ChhHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEE Confidence 00012233457899999999999999999999998863 556788999999999999999999999999999999 Q ss_pred EEEEE-CCeEEEEEEcCCeeEEEEEcC---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEec Q lcl|Aclame:pro 133 KINIL-NGRPSISVHSSSQFWIDFKNN---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKI 208 (518) Q Consensus 133 k~~~d-~~~i~i~~v~ad~~~P~~~~g---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~ 208 (518) .+|.+ +|++++.+++|++.+|+|++. ++..++..-.....+++. +++.|.+. +..|.+ |+. T Consensus 145 ~~~~d~dg~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~y~------------~~~i~~--~~~ 209 (481) T protein:vir:10 145 IVYRDFEDRDTFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVP-VQHVEVYT------------TDKIYY--IEI 209 (481) T ss_pred EEEeCCCCeEEEEEEcccceEEEEcCCCCCceEEEEEEEEEeeCCCce-EEEEEEEe------------cCeEEE--EEe Confidence 99996 688999999999999999864 344433222222233222 23344432 333433 222 Q ss_pred cCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 209 DGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY 288 (518) Q Consensus 209 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~ 288 (518) .++... .+ ...+++....++++++| ++.|+|+|++.++++|++|.++|++ T Consensus 210 ~~~~~~------------------~~---~~~~~~~g~vPvv~~~n---------~~~g~~~~~~v~~lida~~~~~s~~ 259 (481) T protein:vir:10 210 KGGTYH------------------RV---EEVEHYYNDVPIIEYLN---------DQFKQGDFENVIALIDLYDSAQSDT 259 (481) T ss_pred cCCcee------------------ec---ccccccCCceeEEEeec---------CCCCCCchhhHHHHHHHHHHHHHHH Confidence 221110 00 01233333333333333 2459999999999999999999999 Q ss_pred HHHHHhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 289 MREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKA 368 (518) Q Consensus 289 ~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i 368 (518) .++++....++.+-..+...+... . ..+..+......... ...+.+.+..++.+++++..+++...++.+.+.| T Consensus 260 ~~~~~~~~~~~~~~~g~~~~~~~~--~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 333 (481) T protein:vir:10 260 ANYMTDLNDAMLAIIGNVDLDSED--A---KAFRDANMIHLEPGT-NANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDI 333 (481) T ss_pred HHHHHHhcCceeEeecCcCCCccc--h---hhhhhccceeccccc-cccCCCCCcceeEEeecCCHHHHHHHHHHHHHHH Confidence 999987666555544433222111 0 011111111111111 1112233455788999999999999999999989 Q ss_pred HHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCC Q lcl|Aclame:pro 369 VSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPD 448 (518) Q Consensus 369 ~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D 448 (518) ...++.+..+++..++..||.++++..+.+..++.+++..++.+|+++++.++.+.+.. ........+++|.|++ T Consensus 334 ~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-----~~~~~~~~~i~v~f~~ 408 (481) T protein:vir:10 334 HKYTNTPDLNDEQFSGVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLT-----GLKQHNYAELTITFTP 408 (481) T ss_pred HHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCCccccceeeEEeCC Confidence 88888776666544456799999999999999999999999999999999988776432 2223344679999999 Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCC-chhccCcCCCCC Q lcl|Aclame:pro 449 PMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPD-PEAIGGMETKGG 518 (518) Q Consensus 449 ~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~d-p~~~~~~~~~gG 518 (518) .++.|..+.++.+++++ |++|.++++++ +|..++ +++|++||++|+....... +..++.....+| T Consensus 409 ~~~~~~~~~a~~~~kl~--g~is~et~~~~-l~~i~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 474 (481) T protein:vir:10 409 NLPKSMMESINAFNALS--GGVSESTRLSL-LDFIDN--PKEELEKMQEEEAQREKQADKRGYGEAFENHL 474 (481) T ss_pred CCCcCHHHHHHHHHHHh--ccCChHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHhhhhhccCCccCCCCC Confidence 99999999999999874 89999999976 465554 5688999988875443221 111111111111 No 30 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=100.00 E-value=3e-44 Score=259.20 Aligned_cols=449 Identities=8% Similarity=-0.009 Sum_probs=283.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |--...|..+|...... ...++.+..++|.+..+-.++. .....+...++++++|+|+.|++..+.++ T Consensus 39 ~~~~~~i~~~i~~~~~~-----~~~r~~~l~~Yy~g~~~i~~~~-------~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl 106 (511) T protein:vir:10 39 LQNVNEVSKCIEHHMDY-----QRPRLKVLSDYYEGKTKNLVEL-------TRRKEEYMADNRVAHDYASYISDFINGYF 106 (511) T ss_pred ccCHHHHHHHHHHHHHh-----hHHHHHHHHHHhcccCcccccc-------CcccccccCcceeecchHHHHHHHHhhhh Confidence 22222334444333211 1112222222333322211110 11122344567899999999999999999 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcCc Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNNE 159 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g~ 159 (518) |+.|++++.+ ++.+++.|++++++|+|...+.+.+..++..|.++..+|.+ +|++++.+++|.+.+|+|++.. T Consensus 107 ~g~p~~~~~~------d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~~i~~~~p~~~~~vydd~~ 180 (511) T protein:vir:10 107 LGNPIQYQDD------DKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMIRNQDDETRLYKSDAMSTFVIYDNTI 180 (511) T ss_pred cccCceeecC------chHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCC Confidence 9999999753 45678899999999999999999999999999999999997 5889999999999999998743 Q ss_pred ---EEEEEEEEEEEec---CceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 160 ---PFRFNFFEEIPTS---NKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 160 ---~~~~~f~~~~~~~---~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) ...++.+...... +.+.+ ++.|.+ +...|.. |..+++...... .. T Consensus 181 ~~~~~~~vr~~~~~~~d~~~~~~~-~~~~iy------------t~~~i~~--~~~~~~~~~~~~-------------~~- 231 (511) T protein:vir:10 181 ERNSIAGVRYLRTKPIDKTDEDEV-FTVDLF------------TSHGVYR--YLTSRTNGLKLT-------------PR- 231 (511) T ss_pred CCceEEEEEEEEeeecccCccceE-EEEEEE------------eCCcEEE--EEecCCCccccc-------------cc- Confidence 3333322222111 11111 222322 2222322 232222111100 00 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKS 313 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~ 313 (518) +....+++....++++++| +..|.|+|++++++||++|.++|++++.++....++.|...+...+.... T Consensus 232 --~~~~~~~~~~~vPvv~f~n---------n~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~ 300 (511) T protein:vir:10 232 --ENGFESHSFERMPITEFSN---------NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEV 300 (511) T ss_pred --ccccccccCcceeEEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeeccccCCchhh Confidence 0111234444444444443 23599999999999999999999999999988888877666543322111 Q ss_pred c-cccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHH Q lcl|Aclame:pro 314 T-DKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIW 392 (518) Q Consensus 314 ~-~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~ 392 (518) . ......+..+...+....+ .+.+....++.+++.++++.+...++.+.+.|...++.+.-+++--++..||.+++ T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~ 377 (511) T protein:vir:10 301 RKQKEANVLFLEPTVYADSEG---RETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMK 377 (511) T ss_pred ccchhccceeccccccccccc---ccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHH Confidence 0 0000111111111111111 11222345788999999999999999999999998887655553323567999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCH Q lcl|Aclame:pro 393 SLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSV 472 (518) Q Consensus 393 s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~ 472 (518) ...+.+.+++..++..++.+|+++++.|+.+...... .........++|.|.+.++.|..+.++.+++++ |++|. T Consensus 378 ~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~---~~~~~d~~~i~i~f~~~~p~d~~~~~~~~~kl~--G~iS~ 452 (511) T protein:vir:10 378 YKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS---IDANKDFNTVRYVYNRNLPKSLIEELKAYIDSG--GKISQ 452 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---cccccccceeeEEeCCCCCcCHHHHHHHHHHHh--ccCcH Confidence 9999999999999999999999999999887653311 111223347899999999999999999999884 89999 Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCC--chhccCcCCCCC Q lcl|Aclame:pro 473 EEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPD--PEAIGGMETKGG 518 (518) Q Consensus 473 ~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~d--p~~~~~~~~~gG 518 (518) ++++++ .|..++ +++|++||++|+....... +.........+| T Consensus 453 et~~~~-l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 497 (511) T protein:vir:10 453 TTLMSL-FSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDD 497 (511) T ss_pred HHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC Confidence 999977 466654 5688999999876432111 111111111111 No 31 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=100.00 E-value=1.9e-44 Score=260.27 Aligned_cols=455 Identities=9% Similarity=-0.009 Sum_probs=281.4 Q ss_pred CCcCchHHHHHHHHhcCCCCh-----------------------hhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNG-----------------------SEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP 57 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~-----------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 57 (518) .+..-++..+++-=+++.+.- ....++.+..+.|.+..+-.++. .....+ T Consensus 11 ~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~-------~~~~~~ 83 (511) T protein:vir:78 11 TDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVEL-------TRRKEE 83 (511) T ss_pred hhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCcccccc-------Cccccc Confidence 222333333332222221110 01112222222233322211110 011223 Q ss_pred ccccceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE Q lcl|Aclame:pro 58 TVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL 137 (518) Q Consensus 58 ~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d 137 (518) ...++++++|+|+.|++..+++||+.|++++. +++.+++.|++++++|+|.....+.+..+++.|.++..+|.+ T Consensus 84 ~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d 157 (511) T protein:vir:78 84 YMADNRVAHDYASYISDFINGYFLGNPIQYQD------DDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRN 157 (511) T ss_pred ccCcceeecchHHHHHHHHhhhhcccCceeec------CchHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeC Confidence 44567899999999999999999999999975 355678899999999999999999999999999999999996 Q ss_pred -CCeEEEEEEcCCeeEEEEEcCcEE-EEEEEEEEEe--cC--ceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCC Q lcl|Aclame:pro 138 -NGRPSISVHSSSQFWIDFKNNEPF-RFNFFEEIPT--SN--KADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGD 211 (518) Q Consensus 138 -~~~i~i~~v~ad~~~P~~~~g~~~-~~~f~~~~~~--~~--~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~ 211 (518) +|++++.+++|.+.+|+|++.... -++|++.... .+ .....++.|.+ ....|.+ |..+++ T Consensus 158 ~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vy------------t~~~i~~--~~~~~~ 223 (511) T protein:vir:78 158 QDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLF------------TSHGVYR--YLTNRT 223 (511) T ss_pred CCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEE------------eCCcEEE--EEecCC Confidence 588999999999999999874322 2223222211 11 11112223332 2333333 222222 Q ss_pred ccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 KTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMRE 291 (518) Q Consensus 212 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e 291 (518) ...... . ......+++...++++.++| ++.|.|+|++.+++||++|.++|++++. T Consensus 224 ~~~~~~-------------~---~~~~~~~~~~g~vPvv~~~n---------~~~g~gd~e~v~~liDa~~~~~S~~~~~ 278 (511) T protein:vir:78 224 NGLKLT-------------P---RENSFESHSFERMPITEFSN---------NERRKGDYEKVITLIDLYDNAESDTANY 278 (511) T ss_pred Cccccc-------------c---cccccccCcCcccceEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 111100 0 00111233443333333333 2459999999999999999999999999 Q ss_pred HHhccceeeechhhhccCCCC-CccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 292 GEKTKTKIAASERMFRKKVNK-STDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVS 370 (518) Q Consensus 292 ~~~g~~ri~v~~~~l~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~ 370 (518) ++....++.|-..+...+... ........+......+....+ .+......++.+++.+.++.+...++.+.+.|.. T Consensus 279 ~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~ 355 (511) T protein:vir:78 279 MSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEG---RETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHM 355 (511) T ss_pred HHHhhcchhheecCccCCchhhcccccccceeccccceecccc---ccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHH Confidence 988777666655543222111 000011111111122221111 1222334578899999999999999999999999 Q ss_pred HhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCC Q lcl|Aclame:pro 371 KSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPM 450 (518) Q Consensus 371 ~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i 450 (518) .++.+.-+++--++..||.+++...+.+..++..++..++.+|+++++.|+.+...... ........+++|.|.+.+ T Consensus 356 ~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~---~~~~~~~~~i~~~f~~~~ 432 (511) T protein:vir:78 356 FTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS---IDANKDFNTVRYVYNRNL 432 (511) T ss_pred HhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccccccccceEEeCCCC Confidence 88876655543335679999999999999999999999999999999998887643211 111223347899999999 Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhcc-Cc-CCCCC Q lcl|Aclame:pro 451 SVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIG-GM-ETKGG 518 (518) Q Consensus 451 ~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~-~~-~~~gG 518 (518) +.|..+.++.+++++ |++|.++++++ +|..++ +++|++||++|+...........+ .. ....+ T Consensus 433 p~n~~e~~d~~~kl~--G~iS~et~l~~-l~~v~d--~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 497 (511) T protein:vir:78 433 PKSLIEELKAYIDSG--GKISQTTLMSL-FSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDD 497 (511) T ss_pred CcCHHHHHHHHHHHh--ccCChHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC Confidence 999999999999884 89999999976 565654 678999999997543211111110 00 11111 No 32 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=100.00 E-value=1.9e-44 Score=260.27 Aligned_cols=455 Identities=9% Similarity=-0.009 Sum_probs=281.4 Q ss_pred CCcCchHHHHHHHHhcCCCCh-----------------------hhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNG-----------------------SEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP 57 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~-----------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 57 (518) .+..-++..+++-=+++.+.- ....++.+..+.|.+..+-.++. .....+ T Consensus 11 ~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~-------~~~~~~ 83 (511) T protein:vir:96 11 TDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVEL-------TRRKEE 83 (511) T ss_pred hhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCcccccc-------Cccccc Confidence 222333333332222221110 01112222222233322211110 011223 Q ss_pred ccccceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE Q lcl|Aclame:pro 58 TVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL 137 (518) Q Consensus 58 ~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d 137 (518) ...++++++|+|+.|++..+++||+.|++++. +++.+++.|++++++|+|.....+.+..+++.|.++..+|.+ T Consensus 84 ~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d 157 (511) T protein:vir:96 84 YMADNRVAHDYASYISDFINGYFLGNPIQYQD------DDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRN 157 (511) T ss_pred ccCcceeecchHHHHHHHHhhhhcccCceeec------CchHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeC Confidence 44567899999999999999999999999975 355678899999999999999999999999999999999996 Q ss_pred -CCeEEEEEEcCCeeEEEEEcCcEE-EEEEEEEEEe--cC--ceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCC Q lcl|Aclame:pro 138 -NGRPSISVHSSSQFWIDFKNNEPF-RFNFFEEIPT--SN--KADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGD 211 (518) Q Consensus 138 -~~~i~i~~v~ad~~~P~~~~g~~~-~~~f~~~~~~--~~--~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~ 211 (518) +|++++.+++|.+.+|+|++.... -++|++.... .+ .....++.|.+ ....|.+ |..+++ T Consensus 158 ~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vy------------t~~~i~~--~~~~~~ 223 (511) T protein:vir:96 158 QDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLF------------TSHGVYR--YLTNRT 223 (511) T ss_pred CCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEE------------eCCcEEE--EEecCC Confidence 588999999999999999874322 2223222211 11 11112223332 2333333 222222 Q ss_pred ccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 KTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMRE 291 (518) Q Consensus 212 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e 291 (518) ...... . ......+++...++++.++| ++.|.|+|++.+++||++|.++|++++. T Consensus 224 ~~~~~~-------------~---~~~~~~~~~~g~vPvv~~~n---------~~~g~gd~e~v~~liDa~~~~~S~~~~~ 278 (511) T protein:vir:96 224 NGLKLT-------------P---RENSFESHSFERMPITEFSN---------NERRKGDYEKVITLIDLYDNAESDTANY 278 (511) T ss_pred Cccccc-------------c---cccccccCcCcccceEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 111100 0 00111233443333333333 2459999999999999999999999999 Q ss_pred HHhccceeeechhhhccCCCC-CccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 292 GEKTKTKIAASERMFRKKVNK-STDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVS 370 (518) Q Consensus 292 ~~~g~~ri~v~~~~l~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~ 370 (518) ++....++.|-..+...+... ........+......+....+ .+......++.+++.+.++.+...++.+.+.|.. T Consensus 279 ~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~ 355 (511) T protein:vir:96 279 MSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEG---RETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHM 355 (511) T ss_pred HHHhhcchhheecCccCCchhhcccccccceeccccceecccc---ccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHH Confidence 988777666655543222111 000011111111122221111 1222334578899999999999999999999999 Q ss_pred HhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCC Q lcl|Aclame:pro 371 KSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPM 450 (518) Q Consensus 371 ~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i 450 (518) .++.+.-+++--++..||.+++...+.+..++..++..++.+|+++++.|+.+...... ........+++|.|.+.+ T Consensus 356 ~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~---~~~~~~~~~i~~~f~~~~ 432 (511) T protein:vir:96 356 FTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS---IDANKDFNTVRYVYNRNL 432 (511) T ss_pred HhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccccccccceEEeCCCC Confidence 88876655543335679999999999999999999999999999999998887643211 111223347899999999 Q ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhcc-Cc-CCCCC Q lcl|Aclame:pro 451 SVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIG-GM-ETKGG 518 (518) Q Consensus 451 ~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~-~~-~~~gG 518 (518) +.|..+.++.+++++ |++|.++++++ +|..++ +++|++||++|+...........+ .. ....+ T Consensus 433 p~n~~e~~d~~~kl~--G~iS~et~l~~-l~~v~d--~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 497 (511) T protein:vir:96 433 PKSLIEELKAYIDSG--GKISQTTLMSL-FSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDD 497 (511) T ss_pred CcCHHHHHHHHHHHh--ccCChHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC Confidence 999999999999884 89999999976 565654 678999999997543211111110 00 11111 No 33 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=100.00 E-value=3.4e-44 Score=258.89 Aligned_cols=425 Identities=11% Similarity=0.008 Sum_probs=278.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) | -.-.|.++|..|- .+..++.+..+.|.+.+.-.. .....++...+++++|+|+.|++..|++| T Consensus 17 ~-~~~~i~~~i~~~~------~~~~r~~~~~~Yy~g~~~i~~---------~~~~~~~~~~~ki~~n~~~~ivd~~~~~l 80 (452) T protein:vir:36 17 I-TVEVVTKFMEKHK------LEVARYEYLKNMYLGIMAIDD---------EPAKDSWKPDNRLAVNFTKYIVDTFTGYF 80 (452) T ss_pred C-CHHHHHHHHHHHH------HHHHHHHHHHHHhcccccccc---------CccccccCccceeecchHHHHHHHHhhhh Confidence 3 1123445554441 122333333344444322111 11123445567899999999999999999 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcCc Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNNE 159 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g~ 159 (518) |+++++++.. ++.+++.|++++++|+|...+.+.+..+++.|.+++.+|++ +|++++.+++|...+|+|++.. T Consensus 81 ~g~~~~~~~~------d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v~d~~~ 154 (452) T protein:vir:36 81 NGIPVKKSHS------DKEILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDEDTQTNVVYNSPENMFMVYDDTV 154 (452) T ss_pred cccCceeecC------ChhHHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEEcCCC Confidence 9999998753 45678899999999999999999999999999999999997 5899999999999999998753 Q ss_pred EEEEE-EEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccc Q lcl|Aclame:pro 160 PFRFN-FFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNH 238 (518) Q Consensus 160 ~~~~~-f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (518) ....+ +++.....++. .| .|. +...+|.+ |....+.... .. T Consensus 155 ~~~~~~~i~~~~~~~~~-~~--~~v------------yt~~~i~~--~~~~~~~~~~---------------------~~ 196 (452) T protein:vir:36 155 KQEPLFAVRYGVDEDKK-LQ--GEV------------YTLLETIK--ISGENDEISF---------------------GE 196 (452) T ss_pred CCceEEEEEEEEecCce-EE--EEE------------EecCeEEE--EEEcCCceEE---------------------ec Confidence 22222 22222222221 11 122 22223322 2211111100 00 Q ss_pred eeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccc Q lcl|Aclame:pro 239 SVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEE 318 (518) Q Consensus 239 ~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~ 318 (518) ..+++.+.+++++++| ++.|+|+|++.++++|++|.++|++++.++....++.+...+-.. + T Consensus 197 ~~~~~~g~iPvv~~~n---------~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~~g~~~~---~------ 258 (452) T protein:vir:36 197 GTYNPYPDLPVVEFYF---------NEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAVE---E------ 258 (452) T ss_pred ceeccCCcccEEEecC---------CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCcC---c------ Confidence 1234444433444443 245999999999999999999999999998766666654332100 0 Q ss_pred cCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccC-CccchHHHHHHHHHH Q lcl|Aclame:pro 319 WSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLG-NREVKATEIWSLQDA 397 (518) Q Consensus 319 ~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d-~~~~TAtEi~s~~~~ 397 (518) ....+..-+..+....+ +.+.+..++++++++..+.+...++.+.+.|...++.+. ++++ .+..||.++++..+. T Consensus 259 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~~~~gn~Sg~Al~~~~~~ 334 (452) T protein:vir:36 259 -EDLKNIRSNRVINYYAD-GEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVAN--ISDESFGSSSGVSLAYKLQA 334 (452) T ss_pred -hhhhhhhhcceEEecCC-CCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCccc--cCcccccCCcHHHHHHHHHH Confidence 01111111222222222 233345578899999999999999999999988887754 3332 245799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 398 TVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVK 477 (518) Q Consensus 398 t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~ 477 (518) +..+++.++..++.+|+++++.|+.+.... +......+|+|.|.+.++.|..+.++.++++ +|+||.+++++ T Consensus 335 l~~k~~~~~~~~~~~l~~~~~li~~~~~~~------~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~--~g~iS~et~~~ 406 (452) T protein:vir:36 335 MSNLALSFQRKFQSSLNSRYKLFCELSTNV------SNKDSWKDIEYTFTRNEPKDIKEQAETANIL--MGITSQETALS 406 (452) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHH Confidence 999999999999999999999998876532 1223335689999999999999999999886 58999999997 Q ss_pred HHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCc---CCCCC Q lcl|Aclame:pro 478 LIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM---ETKGG 518 (518) Q Consensus 478 ~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~---~~~gG 518 (518) + +|..++ +++|++||++|++.+...++...++. +...+ T Consensus 407 ~-~~~~~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 447 (452) T protein:vir:36 407 V-ISVIPD--VQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVS 447 (452) T ss_pred h-CCCCCC--HHHHHHHHHHHHHHHHHHHhhccCCCCcccccCc Confidence 6 565654 67899999999865421111111111 11111 No 34 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=100.00 E-value=5.2e-44 Score=257.89 Aligned_cols=429 Identities=10% Similarity=0.026 Sum_probs=279.3 Q ss_pred CC--------------cCch-HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 1 MG--------------VWSV-MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 1 ~~--------------~~~~-~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) |- +... |..+|..|- ....++.+..+.|.+.+.- +-.....++...++++ T Consensus 1 ~~~~~~~~~~~p~d~~~~~~~l~~~i~~~~------~~~~r~~~~~~yy~g~~~i---------~~~~~~~~~~~~~ki~ 65 (453) T protein:vir:39 1 MKYKPPKLMTFPKDEPITNEVVTKFMEKHR------LEVARYEYLKNMYRGIMAI---------DAEPTKDLWKPDNRLT 65 (453) T ss_pred CeecCCcceEcCCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHhhccCch---------hcCCCccccCccceee Confidence 21 1111 334443331 1222333333334333211 1111223445567889 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEE Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSIS 144 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~ 144 (518) +|+|+.|++..|++||++|++++.. ++..++.|++++++|+|...+.+.+..+++.|.+++.+|.+ +|+++|. T Consensus 66 ~n~~~~ivd~~~~~l~g~~~~~~~~------d~~~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~ 139 (453) T protein:vir:39 66 VNFTKYIVDTFTGYFNGIPVKKSHS------DKETLSKLQEFDNLNDMEDEESELAKMACIYGRAFELLYQNEETQTNVI 139 (453) T ss_pred cchHHHHHHHHhhhhcccCceeccC------ChHHHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEEEEecCCCceEEE Confidence 9999999999999999999998753 45678899999999999999999999999999999999997 5789999 Q ss_pred EEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccc Q lcl|Aclame:pro 145 VHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQ 224 (518) Q Consensus 145 ~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~ 224 (518) +++|.+.+|+|.+......+|.-+....+... ++.|.+ .+.+|.+ |..+++.. T Consensus 140 ~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~--~~~~~y------------t~~~i~~--~~~~~~~~----------- 192 (453) T protein:vir:39 140 YNTPENMFMVYDDTIKQEPLFAVRYGYDDDYK--LYGEVY------------TKETTYA--LNGTMGFY----------- 192 (453) T ss_pred EEcccceEEEecCCCCCeEEEEEEEEEeCCeE--EEEEEE------------eCCeEEE--EEecCCce----------- Confidence 99999999999875433343333333322221 223333 3334433 22222110 Q ss_pred cccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechh Q lcl|Aclame:pro 225 ITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASER 304 (518) Q Consensus 225 ~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~ 304 (518) . .....+++.+..+++.++| ++.|+|+|++.++++|++|.++|++++.++.....+.+-.. T Consensus 193 -------~---~~~~~~~~~g~vPvv~~~n---------~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~~~~~g 253 (453) T protein:vir:39 193 -------N---MTEQAPNPFDDLPVVEFYF---------NEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLG 253 (453) T ss_pred -------e---eecccccCCCceeEEEecC---------CCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeec Confidence 0 0011245555444444443 24699999999999999999999999999776555444322 Q ss_pred hhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc Q lcl|Aclame:pro 305 MFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR 384 (518) Q Consensus 305 ~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~ 384 (518) +- ..... . .+........+.+. .+.+.+..++.+++++..+.+...++.+.+.|...++.+.-+++- .+ T Consensus 254 ~~---~~~~~---~--~~~~~~~~~~~~~~--~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~-~g 322 (453) T protein:vir:39 254 AA---VEEED---L--KNIRSNRVINYYGE--SSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDES-FG 322 (453) T ss_pred CC---CCchh---h--hhhhhcceeeecCC--CCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccc-cc Confidence 20 00000 0 01111111112221 122234557889999999999999999999998888765322221 24 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 385 EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNM 464 (518) Q Consensus 385 ~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~ 464 (518) ..||.+++...+.+..++++++..++.+|+++++.|+.+.... +.......|+|.|.+.++.|..+.+++++++ T Consensus 323 n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~------~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl 396 (453) T protein:vir:39 323 SSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNV------SNKEAWKDIEYTFTRNEPKDIKEQAETANIL 396 (453) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCccccccceEEeCCCCCcCHHHHHHHHHHH Confidence 5699999999999999999999999999999999998876432 2233345789999999999999999999876 Q ss_pred HhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 465 NSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 465 ~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+||.++++++ +|..++ +++|++||++|++.....++....+-.+.++ T Consensus 397 --~g~is~et~l~~-l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 445 (453) T protein:vir:39 397 --MGITSQETALSV-ISVIPD--VQAEMEKIKKEEASTAIFDKDKQPSEKGTDT 445 (453) T ss_pred --hccCChHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHHhccCCCCCCCC Confidence 589999999976 465654 5688999999987643222221111112222 No 35 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=100.00 E-value=7.4e-44 Score=257.03 Aligned_cols=434 Identities=10% Similarity=-0.001 Sum_probs=281.1 Q ss_pred CCcCc--------------hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecC Q lcl|Aclame:pro 1 MGVWS--------------VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNS 66 (518) Q Consensus 1 ~~~~~--------------~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 66 (518) |-|-+ -|..+|..|-. ...++.+..+.|.+.+. . +-...........++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~------~~~~~~~l~~Yy~g~~~----i-----~~~~~~~~~~~~~ki~~ 65 (499) T protein:vir:10 1 MAVVIDKDLLDDVNEPNIEAINYAIRELQN------RKKRLDKLSDYYNGKQE----I-----EKHEFDNATVEAANVMV 65 (499) T ss_pred CccchhhhHHhhhhcCCHHHHHHHHHHHHH------HHHHHHHHHHHhccccc----h-----hcCCcCcCCCCcceeec Confidence 44432 24455555411 11222222333333321 1 11111234456778999 Q ss_pred chHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECC------- Q lcl|Aclame:pro 67 GTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG------- 139 (518) Q Consensus 67 ~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~------- 139 (518) |+|+.|++..|++||++|+++++. ++..++.|++++++|+|...+.++...++..|.++..+|.+.+ T Consensus 66 n~~~~Iv~~~~~~l~g~p~~~~~~------~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~ 139 (499) T protein:vir:10 66 NHAKYITDMNVGFMTGNPVKYVAE------KGKNIDDILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRD 139 (499) T ss_pred chHHHHHHHHhhhhcccCceeecC------ChhHHHHHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccc Confidence 999999999999999999998863 4456778999999999999999999999999999999988743 Q ss_pred -----------eEEEEEEcCCeeEEEEEcCc---EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEE Q lcl|Aclame:pro 140 -----------RPSISVHSSSQFWIDFKNNE---PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSV 205 (518) Q Consensus 140 -----------~i~i~~v~ad~~~P~~~~g~---~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~l 205 (518) ++++..++|.+.+|+|.+.. +..++.+......+....+++.|.+ .+.+|.+. T Consensus 140 ~~~~~~~~~~~~~~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iy------------t~~~i~~~- 206 (499) T protein:vir:10 140 ELGNEKLTPNTELKIEVIDPRATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVY------------MPQRIVEY- 206 (499) T ss_pred cccccccccccceEEEEEcccceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEE------------eCCeEEEE- Confidence 47799999999999987632 3444433333222211222334433 33444442 Q ss_pred EeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHH Q lcl|Aclame:pro 206 IKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFF 285 (518) Q Consensus 206 y~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~ 285 (518) +..+...... +.......+++...+++++++| ++.|.|+|+++++++|++|..+ T Consensus 207 -~~~~~~~~~~----------------~~~~~~~~~~~~g~vPvv~~~n---------~~~~~~d~e~v~~liD~~~~~~ 260 (499) T protein:vir:10 207 -RTKTTMEVSA----------------NDPIVYDGENLFGAVPIIEFRN---------NEERQGDFEQLISLIDAYNLLQ 260 (499) T ss_pred -EecCCccccC----------------cceecccccCCCCccceEEecC---------CCCCCCchHhHHHHHHHHHHHH Confidence 2222111100 0001112245555444555443 2459999999999999999999 Q ss_pred HHHHHHHHhccceeeechhhh-ccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHH Q lcl|Aclame:pro 286 TVYMREGEKTKTKIAASERMF-RKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYF 364 (518) Q Consensus 286 s~~~~e~~~g~~ri~v~~~~l-~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~ 364 (518) |++++.++.....+.+-..+- ..+.++ ............ +.+....++++++.+..+.+...++.+ T Consensus 261 S~~~~~~~~~~~~~lv~~G~~~~~~~~~---------~~~~~~~~~~~~----~~~~~~d~~~l~~~~~~~~~~~~~~~l 327 (499) T protein:vir:10 261 TDRISDKEAFVDALLVTFGFGLGDDKDD---------IQRLKRGAIEAP----PREEGADIEWLTKSFDETQVNLLSQSI 327 (499) T ss_pred HHHHHHHHHhcCceeeeecCccccccch---------hhhhhhcceecc----CCCCCCcceEEeccCCHHHHHHHHHHH Confidence 999999987666665543321 111100 000011111111 112223478899999999999999999 Q ss_pred HHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEE Q lcl|Aclame:pro 365 AQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVII 444 (518) Q Consensus 365 l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v 444 (518) .+.|...++.+.-+++--++..||.+++...+.+.+++..++..|+.+|+++++.|+.+.... +.......++| T Consensus 328 ~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~------~~~~d~~~i~i 401 (499) T protein:vir:10 328 ENDIHKISYVPNMNDEKFMGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIK------GANDDASGCKI 401 (499) T ss_pred HHHHHHHhCcccCCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCccccccceE Confidence 999999888765444322455799999999999999999999999999999999998875421 22333457899 Q ss_pred EeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 445 EFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 445 ~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .|++.++.|..+.++.++++ +|++|.++++++ +|..++ +++|++||++|+..........+++.++.+| T Consensus 402 ~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~-l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 470 (499) T protein:vir:10 402 SLVANIPSNLSDVVNNVKNA--DGIIPRKYTYSW-LPDVDN--PQDVIDEMNQQDAETIKKNQEALRGQDPDRL 470 (499) T ss_pred EeCCCCCCCHHHHHHHHHHH--hccCChHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHHhhhccCCCCCC Confidence 99999999999999999987 599999999977 576665 5678999988865432211222222222222 No 36 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=100.00 E-value=6.1e-44 Score=257.49 Aligned_cols=449 Identities=8% Similarity=-0.029 Sum_probs=285.2 Q ss_pred CCcC------------------chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccc Q lcl|Aclame:pro 1 MGVW------------------SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDK 62 (518) Q Consensus 1 ~~~~------------------~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 62 (518) .... -.|..+|.++.... ..++.+..++|.+...-.++. .....+...++ T Consensus 21 ~~~~~~~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~-----~~r~~~l~~YY~g~~~i~~~~-------~~~~~~~~~~~ 88 (512) T protein:vir:97 21 FNDEANVVYTYDGTESDLLQNINEVSKYIEHHMDYQ-----RPRLKVLSDYYEGKTKNLVEL-------TRRKEEYMADN 88 (512) T ss_pred eccccccccccCchhhhhhhhHHHHHHHHHHHHHhh-----HHHHHHHHHHhcccCcccccc-------CcccccccCcc Confidence 1111 22445665554321 122223333344433221111 11223445567 Q ss_pred eecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE Q lcl|Aclame:pro 63 LMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP 141 (518) Q Consensus 63 ~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i 141 (518) ++++|+|+.|++..|+++|+.|++++. +++.+++.|++++++|+|...+.+++..+++.|.++..+|.+ +|++ T Consensus 89 ki~~n~~k~Ivd~~~~yl~g~p~~~~~------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~ 162 (512) T protein:vir:97 89 RVAHDYASYISDFINGYFLGNPIQCQD------DDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDET 162 (512) T ss_pred eeecchHHHHHHHHhhhhcccCceecc------CChHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCce Confidence 899999999999999999999999875 355678899999999999999999999999999999999997 5799 Q ss_pred EEEEEcCCeeEEEEEcCc---EEEEEEEEEEEecC--ceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccc Q lcl|Aclame:pro 142 SISVHSSSQFWIDFKNNE---PFRFNFFEEIPTSN--KADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPI 216 (518) Q Consensus 142 ~i~~v~ad~~~P~~~~g~---~~~~~f~~~~~~~~--~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~ 216 (518) ++.+++|.+.+|+|++.. +..++.+......+ .....++.|. +.+..|.+ |+.++...... T Consensus 163 ~i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~v------------yt~~~i~~--~~~~~~~~~~~ 228 (512) T protein:vir:97 163 RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDL------------FTSHGVYR--YLTSRTNGLKL 228 (512) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEE------------EeCCcEEE--EEecCCCcccc Confidence 999999999999998743 33333222221111 1111122222 22333332 33333221110 Q ss_pred cccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 217 SAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK 296 (518) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~ 296 (518) . . .+....+++...++++.++| ++.|.|+|++++++||++|.++|++++.++... T Consensus 229 ~-------------~---~~~~~~~~~~g~vPvv~~~n---------n~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~ 283 (512) T protein:vir:97 229 T-------------P---RENGFESHSFERMPITEFSN---------NERRKGDYEKVITLIDLYDNAESDTANYMSDLN 283 (512) T ss_pred c-------------c---cccccccccCcccceEeecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhc Confidence 0 0 00112234444444444333 246999999999999999999999999999888 Q ss_pred ceeeechhhhccCCCC-Ccc--ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 297 TKIAASERMFRKKVNK-STD--KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSG 373 (518) Q Consensus 297 ~ri~v~~~~l~~~~~~-~~~--~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G 373 (518) .++.|-..+...+... ... ................. .+.+++..++++++++.++.+...++.+.+.|...++ T Consensus 284 ~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~ 359 (512) T protein:vir:97 284 DAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYENRDTG----IETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTN 359 (512) T ss_pred CceeeeecCccCCchhhhhhhhcccccccccchhhcccc----cCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 7777755543222110 000 00000111111111111 1122334478899999999999999999999998887 Q ss_pred CCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 374 YNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 374 ~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d 453 (518) .+.-+++.-++..||.+++...+.+.+++..++..++.+|+++++.|+.+...... .........++|.|.+.++.| T Consensus 360 ~p~~~~~~~~gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~---~~~~~d~~~i~~~f~~~~p~~ 436 (512) T protein:vir:97 360 TPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS---IDANKDFNTVRYVYNRNLPKS 436 (512) T ss_pred CcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccccccccceEEeCCCCCcC Confidence 76655543335579999999999999999999999999999999999887643211 111222346899999999999 Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCC--chhccCcCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPD--PEAIGGMETKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~d--p~~~~~~~~~gG 518 (518) ..+.+++++++ +|++|.++++++ +|..++ +++|++||++|+....... +.........++ T Consensus 437 ~~e~~~~~~kl--~giiS~et~~~~-l~~v~d--~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~ 498 (512) T protein:vir:97 437 LIEELKAYIDS--GGKISQTTLMSL-FSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDD 498 (512) T ss_pred HHHHHHHHHHH--hccCchHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC Confidence 99999999887 499999999977 465654 5678999999876532111 110000001111 No 37 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=100.00 E-value=6.7e-44 Score=257.27 Aligned_cols=437 Identities=16% Similarity=0.094 Sum_probs=279.1 Q ss_pred CCcC-chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccC-CCCccccceecCchHHHHHHHHHH Q lcl|Aclame:pro 1 MGVW-SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQG-YVPTVHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 1 ~~~~-~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~l~~~i~~~~A~ 78 (518) +-.- ..+...|+.+.+..- .+..++.+..+.|.+.+.-.++. +..|... ..+...+.++++|+++.|++..|+ T Consensus 29 ~~~~~e~~~~~i~~~i~~~~--~~~~r~~~l~~YY~g~~~i~~~~---~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~ 103 (483) T protein:vir:12 29 TNNKPETLEEMIVRYIKQHL--EKLPEISIGQEYYEQRPDIVKEP---KPVDATGAVDPLKPDDRMITNFHANLVDQKVS 103 (483) T ss_pred cCCchhhHHHHHHHHHHHHH--HHHHHHHHHHHHhcccccccccc---ccccccccccccccccccccchHHHHHHHHhh Confidence 1111 123334444443211 12223333344444443222111 1122221 234445668899999999999999 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEc Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN 157 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~ 157 (518) ++|++|++++. +|+..++.|+++++ |+|...+.+....++..|.+++.+|++ +|++++.+++|.+++|+|++ T Consensus 104 ~l~G~p~~~~~------~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~~i~~~~p~~~~~v~d~ 176 (483) T protein:vir:12 104 YIVGKPIAFKH------TDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTD 176 (483) T ss_pred hhcccCceecc------CChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEEEcCCCceEEEEEcccceEEEEcC Confidence 99999999875 35567788988875 789999999999999999999999997 57899999999999999975 Q ss_pred ---CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccC Q lcl|Aclame:pro 158 ---NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) Q Consensus 158 ---g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (518) +++..++...... +... .| .+.+.+|.+..+.. +...... .. . .+. T Consensus 177 ~~~~~~~~~ir~~~~~--~~~~----~~------------~y~~~~v~~~~~~~--~~~~~~~-----~~---~---~~~ 225 (483) T protein:vir:12 177 KEHEELEAFIRMYKLE--NETK----VE------------YWDKVTVNYYVYEN--GSLIPDY-----SN---N---LEN 225 (483) T ss_pred CCCCceEEEEEEEEee--cceE----EE------------EEecCeEEEEEEeC--Ceeeecc-----cc---c---ccc Confidence 3444444332222 2111 11 12233344433322 1111000 00 0 000 Q ss_pred cccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCc Q lcl|Aclame:pro 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKST 314 (518) Q Consensus 235 ~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~ 314 (518) ......+++....++++++| ++.|.|+|++.++++|++|.++|++++.++....++.+-..+-..+ T Consensus 226 ~~~~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~----- 291 (483) T protein:vir:12 226 SKTHFSTGSWGKIPFIPFKN---------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQE----- 291 (483) T ss_pred cccccccCCCCccceEEecC---------CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccc----- Confidence 11112344444444444443 3459999999999999999999999999997665555533321110 Q ss_pred cccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSL 394 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~ 394 (518) ...+......+..+... .+..++.+++++.++.+...++.+.+.|...++.+.-+++--++..||.+++.. T Consensus 292 ---~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~ 362 (483) T protein:vir:12 292 ---LPEFKRLLRYYGAIKVS------DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFL 362 (483) T ss_pred ---chhHHHhhhhccccccC------CCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHHHHH Confidence 00111112223333221 123478889999999999999999999998888765555433456799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 395 QDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEE 474 (518) Q Consensus 395 ~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~ 474 (518) ...+..++..++..++.+|+++++.|+.+.. ......+++|.|++.++.|..+.++.++++ +|+||.++ T Consensus 363 ~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~---------~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl--~GiiS~et 431 (483) T protein:vir:12 363 YTNLNLKADKLARKAKVAIQELLWFVFEHFD---------IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHET 431 (483) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCCccceeeEEeCCCCCCCHHHHHHHHHHH--hccCchHH Confidence 9999999999999999999999998877642 122345789999999999999999999987 49999999 Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 475 KVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 475 ~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++++ +|..++ +++|++||++|+....-..+... +.+.+++ T Consensus 432 ~~~~-~~~v~d--~~~E~~ri~~E~~~~~~~~~~~~-~~~~d~~ 471 (483) T protein:vir:12 432 VLEN-HPFVED--LQAELERIEQEQMEYNKQLPNLD-DGGADGA 471 (483) T ss_pred HHHh-CCCCCC--HHHHHHHHHHHHHHHHhhccccc-ccccCCc Confidence 9976 565554 67899999998764422222211 1122111 No 38 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=100.00 E-value=1.3e-43 Score=255.69 Aligned_cols=449 Identities=9% Similarity=0.016 Sum_probs=283.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) .--...|..+|..+... ...++.+..+.|.+..+-.++. .....+...++++++|+|+.|++..+++| T Consensus 39 ~~~~~~i~~~i~~~~~~-----~~~r~~~l~~Yy~g~~~il~~~-------~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl 106 (511) T protein:vir:93 39 LQNVNEVSKYIEHHMDY-----QRPRLKVLSDYYEGKTKNLVEL-------TRRKEEYMADNRVAHDYASYISDFINGYF 106 (511) T ss_pred hccHHHHHHHHHHHHHh-----hHHHHHHHHHHhcccCcccccc-------CcCcccccCcceeecchHHHHHHHHhhhh Confidence 11222344455444321 1122223333333332221111 11122334567899999999999999999 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcC- Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNN- 158 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g- 158 (518) |+.|++++. +++.+++.|++++++|+|...+.+.+..+++.|.+++.+|.+ ++++++.+++|.+.+|+|++. T Consensus 107 ~g~p~~~~~------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~~i~~~~p~~~~~vydd~~ 180 (511) T protein:vir:93 107 LGNPIQYQD------DDKDVLEVIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTI 180 (511) T ss_pred cccCeeecc------CChHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCC Confidence 999999875 355678899999999999999999999999999999999996 688999999999999999874 Q ss_pred --cEEEEEEEEEEEe---cCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 159 --EPFRFNFFEEIPT---SNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 159 --~~~~~~f~~~~~~---~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) +...++....... .+.+. .++.|.+ .+..|.+ |+..+........ T Consensus 181 ~~~~~~~vr~~~~~~~~~~~~~~-~~~~~iy------------t~~~i~~--~~~~~~~~~~~~~--------------- 230 (511) T protein:vir:93 181 ERNSIAGVRYLRTKPIDKTDEDE-VFTVDLF------------TSHGVYR--YLTSRTNGLKLTP--------------- 230 (511) T ss_pred CCceEEEEEEEEeeeccccccce-EEEEEEE------------eCCcEEE--EEecCCCcccccc--------------- Confidence 3433332222211 11121 2223332 2333333 3332221111000 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKS 313 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~ 313 (518) .+....+++...++++.++| ++.|.|+|++++++||++|.++|++++.++....++.|...+...+.... T Consensus 231 -~~~~~~~~~~g~vPvv~~~n---------n~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~ 300 (511) T protein:vir:93 231 -RENGFESHSFERMPITEFSN---------NERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEV 300 (511) T ss_pred -ccccccccCCCccceEEecC---------CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCcccCchhh Confidence 00111234444433444343 23599999999999999999999999999987777777665543221110 Q ss_pred -ccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHH Q lcl|Aclame:pro 314 -TDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIW 392 (518) Q Consensus 314 -~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~ 392 (518) .......+......+....+ .+......++++++++.++.+...++.+.+.|...++.+.-+++--++..||.+++ T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~ 377 (511) T protein:vir:93 301 RKQKEANVLFLEPTVYADSEG---RETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMK 377 (511) T ss_pred cccccccceeccccccccccc---ccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHH Confidence 00000011111111111111 12233455788999999999999999999999988887765554333567999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCH Q lcl|Aclame:pro 393 SLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSV 472 (518) Q Consensus 393 s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~ 472 (518) ...+.+.+++..++..++.+|+++++.|+.+...... .........++|.|.+.++.|..+.+++++++ +|+||. T Consensus 378 ~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~---~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~g~iS~ 452 (511) T protein:vir:93 378 YKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWS---IDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQ 452 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---cccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCch Confidence 9999999999999999999999999999877543211 11122234689999999999999999998887 599999 Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccccCCC-------CchhccCcCCCCC Q lcl|Aclame:pro 473 EEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVP-------DPEAIGGMETKGG 518 (518) Q Consensus 473 ~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~-------dp~~~~~~~~~gG 518 (518) ++++.+ .|..++ +++|++||++|+...... ++...+.-.+.++ T Consensus 453 et~~~~-l~~v~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (511) T protein:vir:93 453 TTLMSL-FSFFQD--PELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDD 502 (511) T ss_pred HHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCc Confidence 999976 465654 557899999886543211 1111110011111 No 39 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=100.00 E-value=1e-43 Score=256.25 Aligned_cols=435 Identities=16% Similarity=0.085 Sum_probs=272.6 Q ss_pred CC-----cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHH Q lcl|Aclame:pro 1 MG-----VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~-----~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~ 75 (518) +- +.-.|.++|+.+. .++.++.+..+.|.+.+.--.+..+.. ......+.....++++|+|+.|++. T Consensus 21 ~~~~~~~~~~~i~~~i~~~~------~~~~~~~~l~~Yy~g~~~i~~~~~~~~--~~~~~~~~~~~~ki~~n~~k~Iv~~ 92 (474) T protein:vir:95 21 MKPKVETQEEMIIRLINNHK------QKLKDINVGQKYYDKDNDINYQAYKQD--LHGNIDYTKPDWRITTNFHQNLVDQ 92 (474) T ss_pred ccccccchHHHHHHHHHHHH------HHHHHHHHHHHHhcccCccccccchhh--hcccccccccccccccchHHHHHHh Confidence 11 0111222222221 111122222222333221100000000 0011123344567899999999999 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWID 154 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~ 154 (518) .|++||++|++++. +++.+++.|+.++ +|+|...+.+++..+++.|.+++.+|++ +|++++.+++|.+++|+ T Consensus 93 ~~~yl~g~p~~~~~------~~~~~~~~l~~~~-~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v 165 (474) T protein:vir:95 93 KVSYVAGKPVTYAH------DDDKVLDVIHQVL-DTRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVPAEQAIPI 165 (474) T ss_pred hhhhhcccCceecc------CChHHHHHHHHHH-hccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEcccceEEE Confidence 99999999999875 3456778888886 5789999999999999999999999997 67999999999999999 Q ss_pred EEcCcEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 155 FKNNEPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 155 ~~~g~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) |+++.... ++|++.....+ .. +.| .+++..|.+..+.+.. ..... .....+ T Consensus 166 ~d~~~~~~~~a~ir~~~~~~-~~---~~~------------vy~~~~i~~~~~~~~~--~~~~~--------~~~~~~-- 217 (474) T protein:vir:95 166 WTDKEREQLNAFIRIFTFNG-ET---KVE------------YWTAETVTYYVYENGG--LIPDF--------YYGDEH-- 217 (474) T ss_pred EcCCCCCceEEEEEEEeecC-ee---EEE------------EEeCCeEEEEEEcCCc--eeecc--------cccccc-- Confidence 98764333 33333333222 11 112 2233444443332221 11000 000001 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKS 313 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~ 313 (518) .......++...++++.++| ++.|.|+|++.+++||++|.++|++++.++.....+.|...+-..+ T Consensus 218 -~~~~~~~~~~~~vPvv~~~n---------n~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~---- 283 (474) T protein:vir:95 218 -IQTHFSTGSWERVPFIAFKN---------NPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGED---- 283 (474) T ss_pred -ccCcccccCCCccceEEecC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCccc---- Confidence 11112234444444443333 2459999999999999999999999999998777777655531111 Q ss_pred ccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHH Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWS 393 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s 393 (518) ...+..+.+.+..+... ++..++.+++++.++++...++.+.+.|...++.+.-.+.-.++..||.+++. T Consensus 284 ----~~~~~~~~~~~~~i~~~------~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~ 353 (474) T protein:vir:95 284 ----LSEFMEGLKYYKAINVS------SDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKFGSATSGIALKF 353 (474) T ss_pred ----ccchhhhhhccceeecc------CCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccccccccccHHHHHHH Confidence 01122222333333221 12347889999999999999999999999999776444332235679999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVE 473 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~ 473 (518) ..+.+..++..++..++.+|+++++.|+.+.. .......|+|+|.+.++.|..+.++.++ .+|+||.+ T Consensus 354 ~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g---------~~~d~~~i~i~f~~~~p~~~~e~a~~~~---~~giiS~e 421 (474) T protein:vir:95 354 LYTNLNLKANKLKNKANVALQELMQFILDFNK---------IKLDAKEIEITFNFNVMVNDLEQSQIGA---QSQYLSKE 421 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcccceeeEEecCCCccCHHHHHHHHH---HcCCCChH Confidence 99999999999999999999999998876531 2233457899999999999999888754 46999999 Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 474 EKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 474 ~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++.+ +|..++ +++|++||++|+......-+...++ +..++ T Consensus 422 t~~~~-lp~v~D--~~~E~eri~~E~~~~~~~~~~~~~~-~~~~~ 462 (474) T protein:vir:95 422 TLVRH-HPWVDD--PKAELERLDEEQLELNKQLPNLDDG-GADGA 462 (474) T ss_pred HHHHh-CCCCCC--HHHHHHHHHHHHHHHHhhccccccc-cCCCC Confidence 99976 565554 5688999998865432222211111 11111 No 40 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=100.00 E-value=1e-43 Score=256.25 Aligned_cols=435 Identities=16% Similarity=0.085 Sum_probs=272.6 Q ss_pred CC-----cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHH Q lcl|Aclame:pro 1 MG-----VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~-----~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~ 75 (518) +- +.-.|.++|+.+. .++.++.+..+.|.+.+.--.+..+.. ......+.....++++|+|+.|++. T Consensus 21 ~~~~~~~~~~~i~~~i~~~~------~~~~~~~~l~~Yy~g~~~i~~~~~~~~--~~~~~~~~~~~~ki~~n~~k~Iv~~ 92 (474) T protein:vir:96 21 MKPKVETQEEMIIRLINNHK------QKLKDINVGQKYYDKDNDINYQAYKQD--LHGNIDYTKPDWRITTNFHQNLVDQ 92 (474) T ss_pred ccccccchHHHHHHHHHHHH------HHHHHHHHHHHHhcccCccccccchhh--hcccccccccccccccchHHHHHHh Confidence 11 0111222222221 111122222222333221100000000 0011123344567899999999999 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWID 154 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~ 154 (518) .|++||++|++++. +++.+++.|+.++ +|+|...+.+++..+++.|.+++.+|++ +|++++.+++|.+++|+ T Consensus 93 ~~~yl~g~p~~~~~------~~~~~~~~l~~~~-~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v 165 (474) T protein:vir:96 93 KVSYVAGKPVTYAH------DDDKVLDVIHQVL-DTRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVPAEQAIPI 165 (474) T ss_pred hhhhhcccCceecc------CChHHHHHHHHHH-hccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEcccceEEE Confidence 99999999999875 3456778888886 5789999999999999999999999997 67999999999999999 Q ss_pred EEcCcEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 155 FKNNEPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 155 ~~~g~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) |+++.... ++|++.....+ .. +.| .+++..|.+..+.+.. ..... .....+ T Consensus 166 ~d~~~~~~~~a~ir~~~~~~-~~---~~~------------vy~~~~i~~~~~~~~~--~~~~~--------~~~~~~-- 217 (474) T protein:vir:96 166 WTDKEREQLNAFIRIFTFNG-ET---KVE------------YWTAETVTYYVYENGG--LIPDF--------YYGDEH-- 217 (474) T ss_pred EcCCCCCceEEEEEEEeecC-ee---EEE------------EEeCCeEEEEEEcCCc--eeecc--------cccccc-- Confidence 98764333 33333333222 11 112 2233444443332221 11000 000001 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKS 313 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~ 313 (518) .......++...++++.++| ++.|.|+|++.+++||++|.++|++++.++.....+.|...+-..+ T Consensus 218 -~~~~~~~~~~~~vPvv~~~n---------n~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~---- 283 (474) T protein:vir:96 218 -IQTHFSTGSWERVPFIAFKN---------NPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGED---- 283 (474) T ss_pred -ccCcccccCCCccceEEecC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCccc---- Confidence 11112234444444443333 2459999999999999999999999999998777777655531111 Q ss_pred ccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHH Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWS 393 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s 393 (518) ...+..+.+.+..+... ++..++.+++++.++++...++.+.+.|...++.+.-.+.-.++..||.+++. T Consensus 284 ----~~~~~~~~~~~~~i~~~------~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~ 353 (474) T protein:vir:96 284 ----LSEFMEGLKYYKAINVS------SDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKFGSATSGIALKF 353 (474) T ss_pred ----ccchhhhhhccceeecc------CCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccccccccccHHHHHHH Confidence 01122222333333221 12347889999999999999999999999999776444332235679999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVE 473 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~ 473 (518) ..+.+..++..++..++.+|+++++.|+.+.. .......|+|+|.+.++.|..+.++.++ .+|+||.+ T Consensus 354 ~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g---------~~~d~~~i~i~f~~~~p~~~~e~a~~~~---~~giiS~e 421 (474) T protein:vir:96 354 LYTNLNLKANKLKNKANVALQELMQFILDFNK---------IKLDAKEIEITFNFNVMVNDLEQSQIGA---QSQYLSKE 421 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcccceeeEEecCCCccCHHHHHHHHH---HcCCCChH Confidence 99999999999999999999999998876531 2233457899999999999999888754 46999999 Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 474 EKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 474 ~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++.+ +|..++ +++|++||++|+......-+...++ +..++ T Consensus 422 t~~~~-lp~v~D--~~~E~eri~~E~~~~~~~~~~~~~~-~~~~~ 462 (474) T protein:vir:96 422 TLVRH-HPWVDD--PKAELERLDEEQLELNKQLPNLDDG-GADGA 462 (474) T ss_pred HHHHh-CCCCCC--HHHHHHHHHHHHHHHHhhccccccc-cCCCC Confidence 99976 565554 5688999998865432222211111 11111 No 41 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=100.00 E-value=4.3e-43 Score=252.85 Aligned_cols=447 Identities=15% Similarity=0.062 Sum_probs=291.0 Q ss_pred chHHHHHHHHhcCCCChhhHHh-hHHH---Hhhccchhhhh----------hhhhhh----hhhhccC-CCCccccceec Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPEL-IPKY---LPLVPDNQKEW----------SKDSYL----TSLWAQG-YVPTVHDKLMN 65 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~-~~~~---~~~~~~~~~~~----------~~~~~~----~~~w~~~-~~~~~~~~~~~ 65 (518) |+|-++|..==.++.....+.. |.+. +..+....+++ ++.... ...|.+. ........+++ T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (474) T protein:vir:10 1 MTLYKLIDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLN 80 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccc Confidence 8888888555444443222222 1111 11111111111 110000 0111111 12233456789 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEE Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSIS 144 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~ 144 (518) +|+|+.|++..++++|+.|+++++.. +...++.++++|++++++|+|.....+++..+++.|.++..+|.+ +|++++. T Consensus 81 ~n~~~~ivd~~~~yl~g~pv~~~~~~-~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~ 159 (474) T protein:vir:10 81 NSFDSEIVDTRVGYLHGVPVTYDLDE-NAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIK 159 (474) T ss_pred cchHHHHHHhHhhheeccceeEeeCC-CCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEE Confidence 99999999999999999999998753 334567889999999999999999999999999999999999887 5789999 Q ss_pred EEcCCeeEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc Q lcl|Aclame:pro 145 VHSSSQFWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE 223 (518) Q Consensus 145 ~v~ad~~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~ 223 (518) +++|.+.+|+|.+ ++...++.+........+..+++.+.+. ...| ..|++++... T Consensus 160 ~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~------------~~~~--~~~~~~~~~~---------- 215 (474) T protein:vir:10 160 NIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYD------------NAYY--YVFRGEGIDA---------- 215 (474) T ss_pred EEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEc------------CceE--EEEeecCCCc---------- Confidence 9999999999976 4454444333333333334444454432 1112 1234332110 Q ss_pred ccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeech Q lcl|Aclame:pro 224 QITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASE 303 (518) Q Consensus 224 ~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~ 303 (518) +.. ....+++.+.++++.++| ++.|.|+|.+.++++|++|..+|++.+.++....++.+-. T Consensus 216 -------~~~---~~~~~~~~g~vPvv~~~n---------~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~ 276 (474) T protein:vir:10 216 -------LQE---VGRYEHLFDYNPLFGVPN---------NKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLR 276 (474) T ss_pred -------ccc---cccccCCCCccceEEecC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhc Confidence 000 111245554444433333 3459999999999999999999999999987666555433 Q ss_pred hhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 304 RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN 383 (518) Q Consensus 304 ~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~ 383 (518) .+- +... +..+......+... +.+..++.+++++.++.+...++.+.+.|...++.+.-.++--+ T Consensus 277 g~~-----~~~~-----~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~ 341 (474) T protein:vir:10 277 GMG-----MSEE-----MIQETQKSGAFELF-----DKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFN 341 (474) T ss_pred cCC-----CCch-----hhhhhhhcceeEec-----CCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccccc Confidence 321 1000 01111111122111 11234788999999999999999999999988877654544223 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 384 REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNN 463 (518) Q Consensus 384 ~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~ 463 (518) ++.||.++++..+.+...+..++..++.+|+++++.|+.+...... +.......+++|.|.+.++.|..+.++.+++ T Consensus 342 ~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~---~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~k 418 (474) T protein:vir:10 342 GNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGY---NLDDDSYLNLIFKFTRNIPVNKLEESQVLIN 418 (474) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCccccccceEEeCCCCCCCHHHHHHHHHH Confidence 5679999999999999999999999999999999999887543211 1112223468999999999999999999998 Q ss_pred HHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 464 MNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 464 ~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +. |++|.++++++ +|..++ +++|++||++|+....-..+...++-...++ T Consensus 419 l~--g~iS~et~~~~-l~~v~d--~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~ 468 (474) T protein:vir:10 419 LK--GQVSERTRLGQ-SQLVDD--VDYELDEMEKESLEFNDKLPDIDEGDANDKS 468 (474) T ss_pred Hh--ccCchHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHhhcccccCCCcCCCC Confidence 74 99999999987 465554 7789999998886544333433332222222 No 42 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=100.00 E-value=4.3e-43 Score=252.85 Aligned_cols=447 Identities=15% Similarity=0.062 Sum_probs=291.0 Q ss_pred chHHHHHHHHhcCCCChhhHHh-hHHH---Hhhccchhhhh----------hhhhhh----hhhhccC-CCCccccceec Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPEL-IPKY---LPLVPDNQKEW----------SKDSYL----TSLWAQG-YVPTVHDKLMN 65 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~-~~~~---~~~~~~~~~~~----------~~~~~~----~~~w~~~-~~~~~~~~~~~ 65 (518) |+|-++|..==.++.....+.. |.+. +..+....+++ ++.... ...|.+. ........+++ T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (474) T protein:vir:94 1 MTLYKLIDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLN 80 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccc Confidence 8888888555444443222222 1111 11111111111 110000 0111111 12233456789 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEE Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSIS 144 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~ 144 (518) +|+|+.|++..++++|+.|+++++.. +...++.++++|++++++|+|.....+++..+++.|.++..+|.+ +|++++. T Consensus 81 ~n~~~~ivd~~~~yl~g~pv~~~~~~-~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~ 159 (474) T protein:vir:94 81 NSFDSEIVDTRVGYLHGVPVTYDLDE-NAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIK 159 (474) T ss_pred cchHHHHHHhHhhheeccceeEeeCC-CCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEE Confidence 99999999999999999999998753 334567889999999999999999999999999999999999887 5789999 Q ss_pred EEcCCeeEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc Q lcl|Aclame:pro 145 VHSSSQFWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE 223 (518) Q Consensus 145 ~v~ad~~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~ 223 (518) +++|.+.+|+|.+ ++...++.+........+..+++.+.+. ...| ..|++++... T Consensus 160 ~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~------------~~~~--~~~~~~~~~~---------- 215 (474) T protein:vir:94 160 NIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYD------------NAYY--YVFRGEGIDA---------- 215 (474) T ss_pred EEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEc------------CceE--EEEeecCCCc---------- Confidence 9999999999976 4454444333333333334444454432 1112 1234332110 Q ss_pred ccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeech Q lcl|Aclame:pro 224 QITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASE 303 (518) Q Consensus 224 ~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~ 303 (518) +.. ....+++.+.++++.++| ++.|.|+|.+.++++|++|..+|++.+.++....++.+-. T Consensus 216 -------~~~---~~~~~~~~g~vPvv~~~n---------~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~ 276 (474) T protein:vir:94 216 -------LQE---VGRYEHLFDYNPLFGVPN---------NKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLR 276 (474) T ss_pred -------ccc---cccccCCCCccceEEecC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhc Confidence 000 111245554444433333 3459999999999999999999999999987666555433 Q ss_pred hhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 304 RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN 383 (518) Q Consensus 304 ~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~ 383 (518) .+- +... +..+......+... +.+..++.+++++.++.+...++.+.+.|...++.+.-.++--+ T Consensus 277 g~~-----~~~~-----~~~~~~~~~~i~~~-----~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~ 341 (474) T protein:vir:94 277 GMG-----MSEE-----MIQETQKSGAFELF-----DKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFN 341 (474) T ss_pred cCC-----CCch-----hhhhhhhcceeEec-----CCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccccc Confidence 321 1000 01111111122111 11234788999999999999999999999988877654544223 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 384 REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNN 463 (518) Q Consensus 384 ~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~ 463 (518) ++.||.++++..+.+...+..++..++.+|+++++.|+.+...... +.......+++|.|.+.++.|..+.++.+++ T Consensus 342 ~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~---~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~k 418 (474) T protein:vir:94 342 GNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGY---NLDDDSYLNLIFKFTRNIPVNKLEESQVLIN 418 (474) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCccccccceEEeCCCCCCCHHHHHHHHHH Confidence 5679999999999999999999999999999999999887543211 1112223468999999999999999999998 Q ss_pred HHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 464 MNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 464 ~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +. |++|.++++++ +|..++ +++|++||++|+....-..+...++-...++ T Consensus 419 l~--g~iS~et~~~~-l~~v~d--~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~ 468 (474) T protein:vir:94 419 LK--GQVSERTRLGQ-SQLVDD--VDYELDEMEKESLEFNDKLPDIDEGDANDKS 468 (474) T ss_pred Hh--ccCchHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHhhcccccCCCcCCCC Confidence 74 99999999987 465554 7789999998886544333433332222222 No 43 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=100.00 E-value=2.7e-43 Score=253.99 Aligned_cols=439 Identities=16% Similarity=0.098 Sum_probs=282.9 Q ss_pred CCcCc-hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC-CCccccceecCchHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWS-VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY-VPTVHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 1 ~~~~~-~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~l~~~i~~~~A~ 78 (518) |-.-+ .+.+.|+.|.+... ....++.+..+.|.+.+.-..+ .+..|+... .+...+.++++|+|+.|++..|+ T Consensus 18 ~~~~~~~~~~~i~~~i~~~~--~~~~~~~~~~~YY~g~~~i~~~---~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~ 92 (472) T protein:vir:93 18 TNNKPETLEEMIVRYIKQHL--EKLPEISIGQEYYEQRPDIVKE---PKPVDATGAVDPLKPDDRMITNFHANLVDQKVS 92 (472) T ss_pred ecCchhhHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccccc---cchhhccccccccccccccccchHHHHHHHHhh Confidence 32222 34555555554322 2233444444455554322211 112233322 23345567899999999999999 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEc Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN 157 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~ 157 (518) ++|++|++++. +++.+++.|+.++ +|+|...+.+....++..|.+++.+|.+ +|++++.+++|.+++|+|++ T Consensus 93 ~l~g~~~~~~~------~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~i~~~~p~~~~~i~d~ 165 (472) T protein:vir:93 93 YIVGKPIAFKH------TDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTD 165 (472) T ss_pred hhcccCeeecc------CChHHHHHHHHHH-hccHHHHHHHHHHHHhhcCeEEEEEEECCCCceEEEEEcccceEEEEcC Confidence 99999999875 3556778898887 4789999999999999999999999987 57899999999999999986 Q ss_pred CcEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcc Q lcl|Aclame:pro 158 NEPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQL 236 (518) Q Consensus 158 g~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 236 (518) ....+ .+|++.....+... .|++ .++.+.+..+.. +..+... . ...+... T Consensus 166 ~~~~~~~~~ir~~~~~~~~~----~~~~------------~~~~~~~~~~~~--~~~~~~~-----~------~~~~~~~ 216 (472) T protein:vir:93 166 KEHEELEAFIRMYKLENETK----VEYW------------DKVTVNYYVYEN--GSLIPDY-----S------NNLENSK 216 (472) T ss_pred CCCCceEEEEEEEEeeccee----EEEE------------ecCeEEEEEEec--Ceeeecc-----c------ccccccc Confidence 43222 22232222222211 1111 223333322221 1111000 0 0000111 Q ss_pred cceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccc Q lcl|Aclame:pro 237 NHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDK 316 (518) Q Consensus 237 ~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~ 316 (518) ....+++...++++.++| ++.|+|+|++.++++|++|.++|++.++++....++.+-..+-..+. T Consensus 217 ~~~~~~~~~~vPvv~~~n---------n~~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~------ 281 (472) T protein:vir:93 217 THFSTGSWGKIPFIPFKN---------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQEL------ 281 (472) T ss_pred cccccCCCCCcceEEecC---------CCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCcccc------ Confidence 123345665555555443 24699999999999999999999999999986666665443311110 Q ss_pred cccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHH Q lcl|Aclame:pro 317 EEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQD 396 (518) Q Consensus 317 ~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~ 396 (518) ..+......+..+.. +.+..++.+++++.++++...++.+.+.|...++.+.-+++..++..||.++++... T Consensus 282 --~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~ 353 (472) T protein:vir:93 282 --PEFKRLLRYYGAIKV------SDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYT 353 (472) T ss_pred --hhhHHHHhhcccccc------CCCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCchHHHHHHHHH Confidence 011111122222221 112346778899999999999999999999988876555544345679999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHH Q lcl|Aclame:pro 397 ATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKV 476 (518) Q Consensus 397 ~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v 476 (518) .+...+.+++..++.+|+++++.++.+.. ......+++|.|++.++.|..+.++.++++ +|++|.++++ T Consensus 354 ~l~~ka~~~~~~~~~~l~~~~~li~~~~~---------~~~~~~~i~v~f~~~~p~~~~~~~~~~~k~--~giis~et~l 422 (472) T protein:vir:93 354 NLNLKADKLARKAKVAIQELLWFVFEHFD---------IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVL 422 (472) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCcccceeeEEeCCCCCCCHHHHHHHHHHH--hccCchHHHH Confidence 99999999999999999999998877642 122345789999999999999999999886 4999999999 Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 477 KLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 477 ~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++ +|..++ +++|++||++|+...+..-+. ..+.+.++| T Consensus 423 ~~-l~~~~d--~~~E~~ri~~E~~~~~~~~~~-~~~~~~d~~ 460 (472) T protein:vir:93 423 EN-HPFVED--LQAELERIEQEQMEYNKQLPN-LDDGGADGA 460 (472) T ss_pred Hh-CCCCCC--HHHHHHHHHHHHHHHHHhccC-cCcccCCCC Confidence 86 465554 668999999886543222111 112222332 No 44 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=100.00 E-value=9.8e-43 Score=250.88 Aligned_cols=457 Identities=12% Similarity=0.084 Sum_probs=288.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhh------hhhhhccCCCCccccceecCchHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSY------LTSLWAQGYVPTVHDKLMNSGTGNEIVV 74 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~------~~~~w~~~~~~~~~~~~~~~~l~~~i~~ 74 (518) |=+ -.+.+.|..+..-.. ....++.+..+.|.+...--.+..+ ....|...........++++|+++.|++ T Consensus 1 ~~~-e~~~~~i~~~~~~~~--~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd 77 (471) T protein:vir:10 1 MEI-EVIKKIISSQMVKHG--KFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLD 77 (471) T ss_pred CCH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHH Confidence 111 123445555553211 1222333333444443211111100 0112222333445567899999999999 Q ss_pred HHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE--CCeEEEEEEcCCeeE Q lcl|Aclame:pro 75 VAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL--NGRPSISVHSSSQFW 152 (518) Q Consensus 75 ~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d--~~~i~i~~v~ad~~~ 152 (518) ..+.++|+.|++++. +++.+++.|+.+++ |+|...+.+....++..|.+++.+|++ +|++++..++|...+ T Consensus 78 ~~~~yl~G~p~~~~~------~~~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~~~~~~~p~~~~ 150 (471) T protein:vir:10 78 QKKAYALTYPPTFDV------DDKKVNDMIVDVLG-DDYERISKQLCVNAGNAGIAWLHVWKDASDNSFRYACVDSKEVI 150 (471) T ss_pred hhhhhhcccCceecc------CChHHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEEeeCCCCeeEEEEEcccceE Confidence 999999999999875 35667888988875 889999999999999999999999997 589999999999999 Q ss_pred EEEEcC---cEEEEE-EEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccc Q lcl|Aclame:pro 153 IDFKNN---EPFRFN-FFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSY 228 (518) Q Consensus 153 P~~~~g---~~~~~~-f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~ 228 (518) |+|++. ++..++ ++......+.+. .++.|.+.. ..+.+ |...+.................. T Consensus 151 ~i~d~~~~~~~~~~ir~~~~~~~~~~~~-~~~~~vy~~------------~~~~~--y~~~~~~~~~~~~~~~~~~~~~~ 215 (471) T protein:vir:10 151 PIYSKSLDKKSIGVLRVYSSIDETDGKN-YTVYEYWND------------KECSF--YRHEKEKPLEELETFQAISLIDT 215 (471) T ss_pred EEEcCCCCCceEEEEEEEEeeccCCCce-eEEEEEEeC------------CcEEE--EEecCCccccccccccccccccc Confidence 999864 344443 222222222222 223343321 11222 22222211110000000001111 Q ss_pred cccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhcc Q lcl|Aclame:pro 229 LHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRK 308 (518) Q Consensus 229 ~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~ 308 (518) ... +..+....+++.+..+++.++| + ..|.|+|...+++||++|..+|++++.++.....+.|...+-.. T Consensus 216 ~~~-~~~~~~~~~~~~g~iPvv~~~n----~-----~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~ 285 (471) T protein:vir:10 216 MNG-DRSSDNSFKHDFGLVPFIPFKN----N-----EIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNYGGQ 285 (471) T ss_pred ccc-cccccccccCCCCceeEEEecc----C-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcc Confidence 111 1122233456666555555544 2 23999999999999999999999999998877777765553110 Q ss_pred CCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchH Q lcl|Aclame:pro 309 KVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKA 388 (518) Q Consensus 309 ~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TA 388 (518) + . ..+......+..+... +.+.+....++++++++..+.+...++.+.+.|...++.+.-++.- .+..|+ T Consensus 286 ~-----~---~~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~~~~~-~gn~Sg 355 (471) T protein:vir:10 286 D-----K---QEFLEDLKRYKMIKMD-NDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNPETDK-LGNSSG 355 (471) T ss_pred c-----c---chhHHHhhcCCeEEec-CCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCCCccc-ccCccH Confidence 0 0 0111112223333322 2223344568999999999999999999999999888776443332 245699 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 389 TEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSAL 468 (518) Q Consensus 389 tEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG 468 (518) .+++...+.+..++..++..|+++|+++++.|+.+... .+...++|.|.+.++.|+.+.++.++++ +| T Consensus 356 ~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~----------~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g 423 (471) T protein:vir:10 356 VALKFLYSLLELKAGNMETQFRSGYATLVKMILKHLGL----------SDKLKIKQTWTRNSINNDTEMAQVVSTL--AT 423 (471) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CCCceeEEEeCCCCCCCHHHHHHHHHHH--hc Confidence 99999999999999999999999999999988776421 1234689999999999999999999886 58 Q ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 469 AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 469 ~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +||.++++++ +|.+++ +++|++||++|+.......+.. ++...+.= T Consensus 424 ~iS~et~~~~-~p~v~D--~~~E~eri~~E~~~~~~~~~~~-~~~~~~~e 469 (471) T protein:vir:10 424 ITSRENVAKS-NPIVED--WQDELRLQKAEQEGRSEKLYDM-EEVEHESE 469 (471) T ss_pred cCchHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHhccccc-CCCCCccc Confidence 9999999976 677765 6688999999876543222221 11111111 No 45 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=100.00 E-value=2e-42 Score=249.17 Aligned_cols=435 Identities=17% Similarity=0.115 Sum_probs=276.6 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC-CCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY-VPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) +-+.-.|.++|..+- .+..++.+..++|.+...-.++ .+..|+... .+.....++++|+|+.|++..|++ T Consensus 43 ~~~~~~i~~~i~~~~------~~~~r~~~l~~YY~g~~~I~~~---~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~y 113 (492) T protein:vir:94 43 ETLEEMIVRYIKQHL------EKLPEISIGQEYYEQRPDIVKE---PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSY 113 (492) T ss_pred hhHHHHHHHHHHHHH------HHHHHHHHHHHHhccccccccc---cccccccccccccccccccccchHHHHHHHHHhh Confidence 322223333333331 1233344444445444321111 122233222 233445678999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g 158 (518) +|+.|++++. +|+.+++.|+.+++ |+|...+.+....++..|.+++.+|.+ +|++++..++|.+.+|+|++. T Consensus 114 l~G~p~~~~~------~d~~~~~~l~~~~~-n~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~v~d~~ 186 (492) T protein:vir:94 114 IVGKPIAFKH------TDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDK 186 (492) T ss_pred hcccCceecc------CchHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEEEcCC Confidence 9999999875 35567888988874 789999999999999999999999997 588999999999999999864 Q ss_pred cEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccc Q lcl|Aclame:pro 159 EPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLN 237 (518) Q Consensus 159 ~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (518) .... .+|++.....+... .|. +.+..|.+..+. .+..+... . ....+ ... T Consensus 187 ~~~~~~a~ir~~~~~~~~~----~~~------------y~~~~v~~~~~~--~~~~~~~~-----~---~~~~~---~~~ 237 (492) T protein:vir:94 187 EHEELEAFIRMYKLENETK----VEY------------WDKVTVNYYVYE--NGSLIPDY-----S---NNLEN---SKT 237 (492) T ss_pred CCCceEEEEEEEeecccee----EEE------------EecCeEEEEEEe--cCeeeecc-----c---ccccc---ccc Confidence 3222 22333333222211 111 122233332222 11111000 0 00000 011 Q ss_pred ceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcccc Q lcl|Aclame:pro 238 HSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKE 317 (518) Q Consensus 238 ~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~ 317 (518) ...+++...+++++++| ++.|+|+|++.++++|++|.++|++++.++....++.+...+-..+. T Consensus 238 ~~~~~~~g~vPvv~~~n---------n~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~------- 301 (492) T protein:vir:94 238 HFSTGSWGKIPFIPFKN---------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQEL------- 301 (492) T ss_pred cccccCCCccceEEecC---------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccc------- Confidence 12334444434444333 24599999999999999999999999999987776766544311110 Q ss_pred ccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHH Q lcl|Aclame:pro 318 EWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDA 397 (518) Q Consensus 318 ~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~ 397 (518) ..+......+..+.. +.+..++.+++++..+.+...++.+.+.|...++.+.-+++--++..||.++++..+. T Consensus 302 -~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~ 374 (492) T protein:vir:94 302 -PEFKRLLRYYGAIKV------SDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTN 374 (492) T ss_pred -hhhHHHHhhccceec------CCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCcCCCccccccCchHHHHHHHHHH Confidence 011111222223222 1123467788999999999999999998888887654444322345689999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 398 TVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVK 477 (518) Q Consensus 398 t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~ 477 (518) +..++..++..++.+|+++++.|+.+.. ......++.|.|++.++.|..+.++.+++++ |++|.+++++ T Consensus 375 l~~k~~~k~~~f~~~l~~~~~li~~~~~---------~~~~~~~i~v~f~~~~p~~~~e~~~~~~kl~--giiS~et~~~ 443 (492) T protein:vir:94 375 LNLKADKLARKAKVAIQELLWFVFEHFD---------IKGEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLE 443 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCcccceeeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHH Confidence 9999999999999999999998877642 1123457899999999999999999998874 9999999997 Q ss_pred HHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 478 LIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 478 ~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) + +|..++ +++|++||++|+.......+...+. +..++ T Consensus 444 ~-l~~v~d--~~~E~eri~~E~~~~~~~~~~~~~~-~~~~~ 480 (492) T protein:vir:94 444 N-HPFVED--LQAELERIEQEQMEYNKQLPNLDDG-GADSA 480 (492) T ss_pred h-CCCCCC--HHHHHHHHHHHHHHHHhhccccccc-cCCCC Confidence 6 465554 6689999998865443222221111 11111 No 46 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=100.00 E-value=2.4e-42 Score=248.78 Aligned_cols=435 Identities=17% Similarity=0.113 Sum_probs=277.1 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccC-CCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQG-YVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) +-+.-.|.++|..+- ....++.+..+.|.+...-.++. +..|... ..+...+.++++|+|+.|++..+++ T Consensus 43 ~~~~~~i~~~i~~~~------~~~~r~~~l~~YY~g~~~i~~~~---~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~y 113 (492) T protein:vir:97 43 ETLEEMIVRYIKQHL------EKLPEISIGQEYYEQRPDIVKEP---KPVDATGAVDPLKPDDRMITNFHANLVDQKVSY 113 (492) T ss_pred hhHHHHHHHHHHHHH------HHHHHHHHHHHHhcccCcccccc---ccccccccccccccccccccchHHHHHHHHhhh Confidence 111222333332221 11222223333444432211111 1122221 2334455678999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g 158 (518) +|+.|++++. +|+..++.|+.++ +|+|...+.+....++..|.+++.+|.+ +|++++.+++|.+.+|+|++. T Consensus 114 l~g~p~~~~~------~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~i~d~~ 186 (492) T protein:vir:97 114 IVGKPIAFKH------TDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDK 186 (492) T ss_pred hcccCceecc------CchHHHHHHHHHH-hccHHHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCC Confidence 9999998864 3556788899887 4789999999999999999999999987 578999999999999999864 Q ss_pred cEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccc Q lcl|Aclame:pro 159 EPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLN 237 (518) Q Consensus 159 ~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (518) ...+ .+|++.....+... .| .+.++.|.+..+... ..... ... ... .... T Consensus 187 ~~~~~~~~vr~~~~~~~~~----~~------------~y~~~~v~~~~~~~~--~~~~~-----~~~---~~~---~~~~ 237 (492) T protein:vir:97 187 EHEELEAFIRMYKLENETK----VE------------YWDKVTVNYYVYENG--SLIPD-----YSN---NLE---NSKT 237 (492) T ss_pred CCCceEEEEEEEeecccee----EE------------EEecCeEEEEEEecC--eeeec-----ccc---ccc---cccc Confidence 3222 23333333222221 11 122334444333321 11100 000 000 0111 Q ss_pred ceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcccc Q lcl|Aclame:pro 238 HSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKE 317 (518) Q Consensus 238 ~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~ 317 (518) ...+++...+++++++| ++.|+|+|++.++++|++|.++|++.++++....++.+...+-..+.. T Consensus 238 ~~~~~~~g~vPvv~~~n---------n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~------ 302 (492) T protein:vir:97 238 HFSTGSWGKIPFIPFKN---------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELP------ 302 (492) T ss_pred ccccCCCCCcceEEecC---------CCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccch------ Confidence 12345554444444443 245999999999999999999999999999877777775544211100 Q ss_pred ccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHH Q lcl|Aclame:pro 318 EWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDA 397 (518) Q Consensus 318 ~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~ 397 (518) .+......+..+... .+..++.+++++.++.+...++.+.+.|...++.+.-.++--++..||.++++..+. T Consensus 303 --~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~ 374 (492) T protein:vir:97 303 --EFKRLLRYYGAIKVS------DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTN 374 (492) T ss_pred --hHHHHHhhccceecC------CCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHHHHHHHH Confidence 011111222222221 122367788999999999999999999988887765444333456799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 398 TVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVK 477 (518) Q Consensus 398 t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~ 477 (518) +...+..++..++.+|+++++.++.+.. ......++.|.|++.++.|..+.++..+++ +|++|.+++++ T Consensus 375 l~~ka~~~~~~f~~~l~~~~~li~~~~~---------~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl--~G~iS~et~l~ 443 (492) T protein:vir:97 375 LNLKADKLARKAKVAIQELLWFVFEHFD---------IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLE 443 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCcccceeeEEecCCCCCCHHHHHHHHHHH--hccCchHHHHH Confidence 9999999999999999999998877642 122345789999999999999999999987 49999999998 Q ss_pred HHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 478 LIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 478 ~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) + +|..++ +++|++||++|+....-..+. ..+.+.++| T Consensus 444 ~-l~~v~d--~~~Eleri~~E~~~~~~~~~~-~~~~~~~~~ 480 (492) T protein:vir:97 444 N-HPFVED--LQAELERIEQEQTEYNKQLPN-LDDGGADSA 480 (492) T ss_pred h-CCCCCC--HHHHHHHHHHHHHHHHHhhhc-cccCCCCCC Confidence 6 565655 568999999887543221221 112222222 No 47 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=100.00 E-value=1.3e-41 Score=244.82 Aligned_cols=421 Identities=11% Similarity=0.020 Sum_probs=281.7 Q ss_pred cCch-HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHc Q lcl|Aclame:pro 3 VWSV-MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYIS 81 (518) Q Consensus 3 ~~~~-~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~ 81 (518) ++.. |..+|+.|- .+..++.+..+.|.+.+.-+.+ ....+....+++++|+|+.|++..+++|| T Consensus 1 l~~~~l~~~i~~~~------~~~~r~~~l~~yy~g~~~il~~---------~~~~~~~~~~ki~~n~~~~ivd~~~~~l~ 65 (429) T protein:vir:98 1 MTKDLLSELIQKHR------SFNLSYSAYKQLYEGDHAILQQ---------KQKEQYKPDNRLVVNFAKYIVDTFNGYFI 65 (429) T ss_pred CCHHHHHHHHHHHH------HHHHHHHHHHHHhccccccccc---------cccccCCCcceeecchHHHHHHHHhhhhc Confidence 2211 334455542 1223333444445444322111 11234455678999999999999999999 Q ss_pred CCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEcCc- Q lcl|Aclame:pro 82 GKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKNNE- 159 (518) Q Consensus 82 ~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~g~- 159 (518) ++|++++. +++..++.|++++++|+|...+.+++..+++.|.+++.+|.+ +|++++.+++|.+.+|+|++.. T Consensus 66 g~~~~~~~------~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~~~~~~p~~~~~v~dd~~~ 139 (429) T protein:vir:98 66 GVPVQTSH------ENKQVSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEAGITYLTPLEAFIVYDDSIR 139 (429) T ss_pred ccCceeec------CChHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEEEEEEcccceEEEEeCCCC Confidence 99999875 356678899999999999999999999999999999999986 5899999999999999998633 Q ss_pred EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce Q lcl|Aclame:pro 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) Q Consensus 160 ~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (518) ..-+.+++.....+.... .++. . ...++ .|........ .... T Consensus 140 ~~~~~~i~~~~~~~~~~~---~~~~----------~--~~~~~--~~~~~~~~~~---------------------~~~~ 181 (429) T protein:vir:98 140 QKPLFAVRYFYNKGGVLE---GSYS----------D--ASNIT--YFKDGEKGIE---------------------IGES 181 (429) T ss_pred CceEEEEEEEEecCceEE---EEEE----------e--CceEE--EEEecCCceE---------------------eccc Confidence 222333333322222111 1111 0 11111 1222111100 0011 Q ss_pred eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcccccc Q lcl|Aclame:pro 240 VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEW 319 (518) Q Consensus 240 ~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~ 319 (518) .+++....++++++| ++.|.|+|.+.++++|++|.++|++++.++....++.+...+ .+.. T Consensus 182 ~~~~~g~vPvv~~~n---------~~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p~~~i~g~-----~~~~----- 242 (429) T protein:vir:98 182 EPHPFDGVPMIEYVE---------NEERQSLLASVVTLINAFNKAISEKANDVEYFADAYLKILGA-----ELDD----- 242 (429) T ss_pred ccccCCccceEEecC---------CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecC-----CCCc----- Confidence 234444444444443 246999999999999999999999999999887777664332 0000 Q ss_pred CCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHH Q lcl|Aclame:pro 320 SMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATV 399 (518) Q Consensus 320 ~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~ 399 (518) .+..+...+..+..... ++....++.+++++..+.+...++.+.+.|...++.+.-.++ ..+..||.+++...+.+. T Consensus 243 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~-~~gn~Sg~Al~~~~~~l~ 319 (429) T protein:vir:98 243 ETLKSLRDTRIINLKDT--DAQQLTVEFLQKPDADATQEHLLDRLENLIFRTAMVANISDE-SFGTASGIALRYRLQAMD 319 (429) T ss_pred chhhhHhhCceeeccCC--CCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCcc-ccccchHHHHHHHHHHHH Confidence 12222223333333221 122335788999999999999999999999888877533322 224569999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHH Q lcl|Aclame:pro 400 RKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLI 479 (518) Q Consensus 400 ~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~ 479 (518) .++..+++.++.+|+++++.|+.+.... +.......++|.|.+.++.|..+.++.++++ +|+||.+++++++ T Consensus 320 ~k~~~~~~~~~~~l~~~~~li~~~~~~~------~~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~~~~l 391 (429) T protein:vir:98 320 NLAKTKERKFMSGMNRRYKLIASYPTSK------IGPKDWIGIKYKFTRNLPANLLEESQIAGNL--AGIVSEETQVGVL 391 (429) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC------CCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhC Confidence 9999999999999999999998875321 1223345689999999999999999999887 5899999999775 Q ss_pred cCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 480 HPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 480 ~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) |..++ +++|++||++|+.... ....++++...+ T Consensus 392 -~~v~d--~~~E~~ri~~E~~~~~---~~~~~~~~~~~~ 424 (429) T protein:vir:98 392 -SIVEN--PQKEIERKNSDKSTLI---SRQAGGLNGQNT 424 (429) T ss_pred -CCCCC--HHHHHHHHHHHHHHHH---HHHHhhhcCCCC Confidence 66665 5688999999987542 223344554444 No 48 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=100.00 E-value=1.5e-41 Score=244.44 Aligned_cols=430 Identities=10% Similarity=0.005 Sum_probs=274.9 Q ss_pred CC---------------cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 1 MG---------------VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 1 ~~---------------~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) |- ....|.++|+++- .+..++.+..+.|.+.++-. -.....++....+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~------~~~~r~~~~~~yy~g~~~i~---------~~~~~~~~~~~~ki~ 65 (453) T protein:vir:73 1 MNLKPIKLMTYSRDEEITDKVVNDFMKKHQ------EEVERYEYLGNMYKGIMEIS---------SQKAKDSWKPDNRLT 65 (453) T ss_pred CccccceeeeccccccCCHHHHHHHHHHHH------HHHHHHHHHHHHhccccchh---------cCCCCCccCccceee Confidence 11 1123444554441 23334444444444443211 112334566677899 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEE Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSIS 144 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~ 144 (518) +|+|+.|++..|+++|+++++++. +++..++.|++++++|+|...+.+++..+++.|.+++.+|.+ +|++++. T Consensus 66 ~n~~~~ivd~~~~~l~g~~~~~~~------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~ 139 (453) T protein:vir:73 66 NNFAKYIVDTFVGYFNGIPIKKTH------DDKSVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESEVI 139 (453) T ss_pred cchHHHHHHHhhhhhcccCceeec------CChHHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceEEE Confidence 999999999999999999999874 356678899999999999999999999999999999999996 6789999 Q ss_pred EEcCCeeEEEEEcCcEEEEEEE-EEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc Q lcl|Aclame:pro 145 VHSSSQFWIDFKNNEPFRFNFF-EEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE 223 (518) Q Consensus 145 ~v~ad~~~P~~~~g~~~~~~f~-~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~ 223 (518) +++|...+|+|+++.....+|. ......+. ..| .+. +...+|.+ |+.+++.... T Consensus 140 ~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~-~~~--~~v------------yt~~~i~~--~~~~~~~~~~-------- 194 (453) T protein:vir:73 140 YCSPLNVFMVYDDSIKQKPLFAVYYGFDEEG-NLS--GTV------------YTLLETIS--ITGKAGEVKF-------- 194 (453) T ss_pred EEcccceEEEEeCCCCceeEEEEEEEEecCc-eEE--EEE------------EeCCeEEE--EEecCCceEE-------- Confidence 9999999999987532222222 22222222 111 111 11222322 2222211100 Q ss_pred ccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeech Q lcl|Aclame:pro 224 QITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASE 303 (518) Q Consensus 224 ~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~ 303 (518) ....+++...++++.++| ++.|.|+|.+.++++|++|.++|++++.++.....+.+-. T Consensus 195 -------------~~~~~~~~g~vPvv~~~n---------~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~ 252 (453) T protein:vir:73 195 -------------GESTYNVYSDLPIVEYNF---------NEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVFL 252 (453) T ss_pred -------------ccceeccCCceeEEEecC---------CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeeee Confidence 001233443333333332 3569999999999999999999999999977555544433 Q ss_pred hhhccCCCCCccccccCCCcch--hheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 304 RMFRKKVNKSTDKEEWSMNVDE--DYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNL 381 (518) Q Consensus 304 ~~l~~~~~~~~~~~~~~~d~d~--~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~ 381 (518) .+-..+..... +.... ..+..... ..........++..++++..+.+...++.+.+.|...++.+. +++ T Consensus 253 g~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~--~~~ 323 (453) T protein:vir:73 253 GAEVDEEDAKN------IKDNRLINFFDKNSN-GQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAAN--ISD 323 (453) T ss_pred cCCCCchhhhc------ccccccccccccccc-cccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcc--cCc Confidence 22101100000 00000 00000000 011112233478889999999999999999998888876653 333 Q ss_pred CC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH Q lcl|Aclame:pro 382 GN-REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST 460 (518) Q Consensus 382 d~-~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~ 460 (518) +. +..||.++++..+.+..++..++..++.+|+++++.|+.+.... +.......++|.|++.++.|..+.++. T Consensus 324 ~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~------~~~~~~~~i~v~f~~~~p~~~~~~a~~ 397 (453) T protein:vir:73 324 ENFGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNA------SNKDAWKDIEYTFTRNEPKDIKEQAET 397 (453) T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCccccccceEEeCCCCCCCHHHHHHH Confidence 22 45799999999999999999999999999999999988775421 222333578999999999999999999 Q ss_pred HHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhcc-CcCCCCC Q lcl|Aclame:pro 461 LNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIG-GMETKGG 518 (518) Q Consensus 461 ~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~-~~~~~gG 518 (518) +++++ |++|.++++++ +|..++ +++|++||++|+......+....+ .-+..-| T Consensus 398 ~~k~~--giis~et~~~~-~~~~~d--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 451 (453) T protein:vir:73 398 ANILK--GITSEETALSV-ISVIPD--VQAEMEKIKKKKLLQLSLTRTSNLVRMKQMRG 451 (453) T ss_pred HHHHh--ccCcHHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHHhccCCcchhhhc Confidence 99885 89999999976 576665 567889998887654221111000 0011122 No 49 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=100.00 E-value=9.8e-40 Score=234.43 Aligned_cols=470 Identities=11% Similarity=0.047 Sum_probs=273.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccC-CCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQG-YVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) |=+ +.+..+|+..+.-.-......++.+-.+.|.+...-..+.......++.. .-......++++|+++.|++..+.+ T Consensus 8 ~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Ivd~~~~y 86 (537) T protein:vir:78 8 KPI-DQLGGLLNTEITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFTELVDQLAQY 86 (537) T ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccccccccccccccccccccccccchHHHHHHHHhhh Confidence 222 44455554444211010111222222233333321111110000001110 0122344679999999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEc- Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN- 157 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~- 157 (518) ||+.|++++... .+++.+++.|+.++ +|+|...+.+.+..++..|.++..+|++ ++++++..++|.++||+|++ T Consensus 87 l~G~Pv~~~~~d---~~~~e~~~~l~~~~-~~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~~~~i~p~~~~pv~d~~ 162 (537) T protein:vir:78 87 LLSNGVEVKVKD---EDNTQLDEILQEYF-DEDFQATIDTLVTNASKKGFEGIFARTTSEGKLKFQTVDGLTLIPVFDDY 162 (537) T ss_pred hcccCceeecCc---chhHHHHHHHHHHh-hccHHHHHHHHHHHHhhcCeeEEEeeecCCCceEEEEEccceeEEEEcCC Confidence 999999988642 23456777888877 5889999999999999999999999997 57899999999999999986 Q ss_pred CcEEEEEEEEEEEe-----cCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccc-ccccccccccccccc-- Q lcl|Aclame:pro 158 NEPFRFNFFEEIPT-----SNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTT-PISAERLPEQITSYL-- 229 (518) Q Consensus 158 g~~~~~~f~~~~~~-----~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v-~~~~~~~~~~~~~~~-- 229 (518) +++..++.+..... .+.+. .++.|++. ...|.+..+++.+.... ..........+..+. T Consensus 163 ~~~~~~~~~y~~~~~~~~~~~~~~-~~~~evyt------------~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 229 (537) T protein:vir:78 163 GVLKMIIRWYSEIRYSTKQQSTET-IWHADVWN------------EEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAI 229 (537) T ss_pred CCceeEEEEEeeeeccccccCcce-EEEEEEEc------------CCcEEEEEecCCcccccccccccccccccceeeec Confidence 55665554433221 11122 22344443 22333322222111000 000000000000000 Q ss_pred ------ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeech Q lcl|Aclame:pro 230 ------HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASE 303 (518) Q Consensus 230 ------~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~ 303 (518) ...........+++....+++.++| | ..|+|+|.+.+++||++|...|++.+.++.-...++|-. T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~iPvv~f~n----n-----~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~ 300 (537) T protein:vir:78 230 EESTDADFEDTDGYQVLGRSYSKFPFQLLYN----N-----KDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVK 300 (537) T ss_pred cccccccccccccccccccCCcceeEEEecc----C-----ccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeee Confidence 0000111112234444434433332 2 359999999999999999999999999988777777755 Q ss_pred hhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccccc-C Q lcl|Aclame:pro 304 RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNL-G 382 (518) Q Consensus 304 ~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~-d 382 (518) ++- +.. .-.+..+.+.+..+... +.+..++.+++++.+++....++.|.+.|...+ ..+. ++. . T Consensus 301 g~~-----~~~---~~~~~~~l~~~~~i~v~-----~d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~s-~~~~-~~~~~ 365 (537) T protein:vir:78 301 GFS-----GDS---TDKLRQNIKAKKMIGVN-----GDNAGMEIQTVSIPYEARKAKMDIDVENIYRSG-MGFN-STAVG 365 (537) T ss_pred cCC-----Ccc---chhHHHHHhhcCceeec-----CCCCceeEEEecCCHHHHHHHHHHHHHHHHHhc-CCCC-Ccccc Confidence 431 100 00111122233333221 112347899999999999999999999887654 3232 222 2 Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 383 NREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLN 462 (518) Q Consensus 383 ~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~ 462 (518) .+..|+.+++...+.+...++.+++.++++|+++++.|+.+.+... ........|.|.|.+.+|.|..+.+++++ T Consensus 366 ~gn~SGvAlk~~~~~l~~ka~~ke~~f~~~l~~~~~~i~~~~~~~~-----~~~~d~~~i~i~f~~~~P~n~~e~a~~~~ 440 (537) T protein:vir:78 366 DGNVTNVVIKSRYTLLAMKARKMETSLRKVLRWCADMVVSDIALRG-----LGEYDSNDICFEIEPHVLANELDIATTRK 440 (537) T ss_pred ccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CcccccceeeEEeccCCCCCHHHHHHHHH Confidence 3557999999999999999999999999999999999998865421 12233457999999999999999999999 Q ss_pred HHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHH------------HHHhcccc--CCCCchhccC-------------cCC Q lcl|Aclame:pro 463 NMNSALAMSVEEKVKLIHPKWEDEEIQAEVKR------------IYLENAIG--EVPDPEAIGG-------------MET 515 (518) Q Consensus 463 ~~~~aG~~S~~~~v~~~~~~~~eeea~eev~r------------I~~E~~~~--~~~dp~~~~~-------------~~~ 515 (518) +++++|++|.++++++ +|..++.|.++..++ +.++++.. ..+++.+... -++ T Consensus 441 ~l~~~giiS~eT~l~~-~p~vdd~e~ek~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 519 (537) T protein:vir:78 441 TEAETEALKIGNIMTV-APRIGDDETLKLIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPNQP 519 (537) T ss_pred HHHhcCcchHHHHHHh-CCCCCCHHHHHHHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCccCC Confidence 9999999999999976 576665432211111 01111111 1112111110 011 Q ss_pred CCC Q lcl|Aclame:pro 516 KGG 518 (518) Q Consensus 516 ~gG 518 (518) .|+ T Consensus 520 ~~~ 522 (537) T protein:vir:78 520 VAD 522 (537) T ss_pred CCC Confidence 111 No 50 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=100.00 E-value=1.6e-38 Score=227.74 Aligned_cols=431 Identities=13% Similarity=0.079 Sum_probs=275.5 Q ss_pred chHHH---HHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhcc-CCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 5 SVMTR---FIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQ-GYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 5 ~~~~~---~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) +++.. +|..+- ....++.+..+.|.+...-..+. ...+.+ .........++++|+++.|++..+.++ T Consensus 1 l~~~~i~~~i~~~~------~~~~r~~~~~~YY~g~~~i~~~~---~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl 71 (451) T protein:vir:10 1 MELEKIRAIISADA------ARRQEILQAKSYYYNKNDILKKG---VVVQNRDENPLRNADNRISHNFHEILVDEKASYM 71 (451) T ss_pred CCHHHHHHHHHHHH------HHHHHHHHHHHHhcccCcccccc---ccccccccccccccccccccchHHHHHHhhhhhe Confidence 33332 332221 11223333333444432111100 011111 112333455888999999999999999 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC---------CeEEEEEEcCCee Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN---------GRPSISVHSSSQF 151 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~---------~~i~i~~v~ad~~ 151 (518) |+.|++++++ +++..++.++.++ +|+|...+.+....++..|.++..+|++. +++++..++|.++ T Consensus 72 ~G~p~~~~~~-----~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~ 145 (451) T protein:vir:10 72 FTYPVLFDID-----NNKELNEKVTDVL-GNEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEI 145 (451) T ss_pred ecccceeecC-----CcHHHHHHHHHHh-ccCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccce Confidence 9999998763 3455667777766 58899999999999999999999999974 6789999999999 Q ss_pred EEEEEcC---cEEEEEEEEEEEecCc----eEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccc Q lcl|Aclame:pro 152 WIDFKNN---EPFRFNFFEEIPTSNK----ADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQ 224 (518) Q Consensus 152 ~P~~~~g---~~~~~~f~~~~~~~~~----~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~ 224 (518) +|+|++. ++..++.+........ ...+++.|.+. .-.|.+ |+..+..... T Consensus 146 ~~vydd~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt------------~~~~~~--~~~~~~~~~~--------- 202 (451) T protein:vir:10 146 IPIYRNGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWT------------DKILDK--YKFFGVSCCG--------- 202 (451) T ss_pred EEEEcCCCCCceEEEEEEEEeeecccccccceEEEEEEEEe------------CCeEEE--EEecccCccc--------- Confidence 9999864 4444443222221111 11233333332 112222 2221111110 Q ss_pred cccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechh Q lcl|Aclame:pro 225 ITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASER 304 (518) Q Consensus 225 ~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~ 304 (518) +..+....+++....++++++| + +.|.|+|++.++++|++|.+.|++.+.++.....+.+-.. T Consensus 203 --------~~~~~~~~~~~~g~vPvv~~~n----n-----~~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g 265 (451) T protein:vir:10 203 --------SQIEHITVQHRFNSVPFVEFSN----N-----IKKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILEN 265 (451) T ss_pred --------cccccccccCCCCeeeEEEecc----C-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeec Confidence 0001112345555545544443 2 3489999999999999999999999999876666666444 Q ss_pred hhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc Q lcl|Aclame:pro 305 MFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR 384 (518) Q Consensus 305 ~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~ 384 (518) +-..+.. .+......+..+....+ +.+....++++++++.++++...++.+.+.|...++.+.-++. ..+ T Consensus 266 ~~~~~~~--------~~~~~~~~~~~i~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~g 335 (451) T protein:vir:10 266 FGGEDTS--------EFLKELKRYKTIKTETD-SEGDSGGLKTMQIEIPTEARKIILEILKKQIYESGQGLQQDTE-NFG 335 (451) T ss_pred CCcccch--------hhHHHHhhCCeEEecCc-CCccCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCccccccc-ccc Confidence 3111000 01111122222222211 1222345788999999999999999999999988876643222 124 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 385 EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNM 464 (518) Q Consensus 385 ~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~ 464 (518) ..||.+++...+.+...+..++..++++|+++++.|+.+... .....+.|.|++.+|.|..+.++.++++ T Consensus 336 n~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~----------~d~~~i~i~f~~~~p~n~~e~~~~~~kl 405 (451) T protein:vir:10 336 NASGVALKFFYRKLELKSGLLETEFRTSFDKLIKAILYFLGV----------TDYKKIQQTYTRNMMSNDLEDADIATKS 405 (451) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CCccceeEEecCCCCCCHHHHHHHHHHH Confidence 579999999999999999999999999999999998876421 1234688999999999999999999988 Q ss_pred HhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCC Q lcl|Aclame:pro 465 NSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMET 515 (518) Q Consensus 465 ~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~ 515 (518) + |++|.++++++ +|..++ +++|.++|++|+..........++.|+. T Consensus 406 ~--g~iS~et~~~~-~p~v~d--~~~e~~~~~ee~~~~~~~~~~~~~~~~~ 451 (451) T protein:vir:10 406 V--GIIPTKIILRH-HPWVDD--VEEAEKLYLEEKKIQASKVSDDYNNFTE 451 (451) T ss_pred h--ccCchHHHHHh-CCCCCC--HHHHHHHHHHHHHHHHHHHHhhcCCCCC Confidence 4 89999999976 576665 4577788877765543333445555555 No 51 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=100.00 E-value=1.2e-36 Score=217.50 Aligned_cols=441 Identities=11% Similarity=0.003 Sum_probs=257.0 Q ss_pred CCcCch---HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCc--cccceecCchHHHHHHH Q lcl|Aclame:pro 1 MGVWSV---MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPT--VHDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~~~~~---~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~l~~~i~~~ 75 (518) |-=-.+ +...|+.|-. +..++.+..+.|.+..+ ...++...++. ...+++++|+|+.||+. T Consensus 1 ~~~~t~~~~~~~l~~~~~~------~~~r~~~l~~Yy~g~~~--------i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~ 66 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDD------GMSRVRLLARYSNGDAP--------LPELTRNTSAAWRSFQREARTNWGLMVRDS 66 (456) T ss_pred CCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCC--------chhcCcccChhhhhhhhhhhcchHHHHHHH Confidence 110000 1111222210 11111111112222211 00111111111 11356889999999999 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWID 154 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~ 154 (518) +++++++++.++.. . +|....+.++++++.|+|.....+++..++..|.++..+|-+ +|.++|..++|...+|+ T Consensus 67 ~~~~l~~~~~~~~~--~---~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i 141 (456) T protein:vir:10 67 VADRIIPNGITVGG--S---ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVS 141 (456) T ss_pred HHhhhccCCeecCC--C---CCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEE Confidence 99999999866542 2 233345678889999999999999999999999998888775 57899999999999999 Q ss_pred EEcCc---EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 155 FKNNE---PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 155 ~~~g~---~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) |++.. ...++... ...+....|. .++.... . .++++.-..|.......... .... + T Consensus 142 ~d~~~~~~~~~~i~~~--~~~d~~~~~~-~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~--------~~~~--~ 200 (456) T protein:vir:10 142 VDPLQPWRIRAAMRWW--RDLDAESDFA-IVWSGDG-W-------QKFARPCFVQSSSRRRLVTR--------ISDS--W 200 (456) T ss_pred EcCCCCcceEEEEEEE--EecCCceeEE-EEEeccc-e-------eEEEEEEEEeecccceeeee--------cCCc--e Confidence 98643 22332222 2223222222 1221100 0 01111111111111000000 0000 0 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhh---- Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMF---- 306 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l---- 306 (518) ......+++...+++++++| |.|+|+|.+.++++|++|.+.|+.+...+...- ..++ ..+. T Consensus 201 ---~~~~~~~~~~~~~pvv~~~N----------~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i-~G~~~~~~ 266 (456) T protein:vir:10 201 ---VPVGDAVVTGSPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRAL-KSTEHGLP 266 (456) T ss_pred ---eeccccCCCCCceeEEEecC----------CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhh-hccCcccc Confidence 00111233334444444322 459999999999999999999998877654332 2222 1111 Q ss_pred ccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccc Q lcl|Aclame:pro 307 RKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV 386 (518) Q Consensus 307 ~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~ 386 (518) ..+..|... +. ...+....+...... .+..+.+++ .-..+.|.+.++.+++.+...+++++..|+.+.++. T Consensus 267 ~~d~~g~~~------~~-~~~~~~~~~~~~~~~-~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~ 337 (456) T protein:vir:10 267 NVDENGNAI------DY-ASIFEAAPGALWELP-PGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ 337 (456) T ss_pred ccccccccc------ch-hhhhhhhccccccCC-CCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhcccccCh Confidence 111111110 00 111111111111111 122233333 345678999999999999999999999999876667 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) ||.+++.....+.+.+..++..++++|+++++.++.+.. ......+.|.|.|..+++..+.++.++++++ T Consensus 338 Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g----------~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~ 407 (456) T protein:vir:10 338 SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG----------ESVEDTVDVSFESPDRVTLGEKYSAASLAKA 407 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCcccceeEEecCCCCcCHHHHHHHHHHHHH Confidence 999999999999999999999999999999998865531 1234578999999999999999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCHHHH-HHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWEDEEI-QAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~eeea-~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) +|++|.+++... ++++++++ ++|.+|+++|+... ..++...+.-|+.- T Consensus 408 ~gi~~~~~~~~~--lg~~~~~i~~~e~er~~~e~~~~-~~~~~~~~~~~~~~ 456 (456) T protein:vir:10 408 AGESWASIRRNI--LNYNADQIKQDDLDRAREQITLF-AGNPVQRPQEDGSR 456 (456) T ss_pred cCCChHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHH-hhhhhhcCCCCCCC Confidence 999999987764 47887764 46888998886532 22222221111111 No 52 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=100.00 E-value=1.2e-36 Score=217.50 Aligned_cols=441 Identities=11% Similarity=0.003 Sum_probs=257.0 Q ss_pred CCcCch---HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCc--cccceecCchHHHHHHH Q lcl|Aclame:pro 1 MGVWSV---MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPT--VHDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~~~~~---~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~l~~~i~~~ 75 (518) |-=-.+ +...|+.|-. +..++.+..+.|.+..+ ...++...++. ...+++++|+|+.||+. T Consensus 1 ~~~~t~~~~~~~l~~~~~~------~~~r~~~l~~Yy~g~~~--------i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~ 66 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDD------GMSRVRLLARYSNGDAP--------LPELTRNTSAAWRSFQREARTNWGLMVRDS 66 (456) T ss_pred CCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCC--------chhcCcccChhhhhhhhhhhcchHHHHHHH Confidence 110000 1111222210 11111111112222211 00111111111 11356889999999999 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWID 154 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~ 154 (518) +++++++++.++.. . +|....+.++++++.|+|.....+++..++..|.++..+|-+ +|.++|..++|...+|+ T Consensus 67 ~~~~l~~~~~~~~~--~---~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i 141 (456) T protein:vir:10 67 VADRIIPNGITVGG--S---ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVS 141 (456) T ss_pred HHhhhccCCeecCC--C---CCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEE Confidence 99999999866542 2 233345678889999999999999999999999998888775 57899999999999999 Q ss_pred EEcCc---EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 155 FKNNE---PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 155 ~~~g~---~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) |++.. ...++... ...+....|. .++.... . .++++.-..|.......... .... + T Consensus 142 ~d~~~~~~~~~~i~~~--~~~d~~~~~~-~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~--------~~~~--~ 200 (456) T protein:vir:10 142 VDPLQPWRIRAAMRWW--RDLDAESDFA-IVWSGDG-W-------QKFARPCFVQSSSRRRLVTR--------ISDS--W 200 (456) T ss_pred EcCCCCcceEEEEEEE--EecCCceeEE-EEEeccc-e-------eEEEEEEEEeecccceeeee--------cCCc--e Confidence 98643 22332222 2223222222 1221100 0 01111111111111000000 0000 0 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhh---- Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMF---- 306 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l---- 306 (518) ......+++...+++++++| |.|+|+|.+.++++|++|.+.|+.+...+...- ..++ ..+. T Consensus 201 ---~~~~~~~~~~~~~pvv~~~N----------~~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i-~G~~~~~~ 266 (456) T protein:vir:10 201 ---VPVGDAVVTGSPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRAL-KSTEHGLP 266 (456) T ss_pred ---eeccccCCCCCceeEEEecC----------CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhh-hccCcccc Confidence 00111233334444444322 459999999999999999999998877654332 2222 1111 Q ss_pred ccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccc Q lcl|Aclame:pro 307 RKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV 386 (518) Q Consensus 307 ~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~ 386 (518) ..+..|... +. ...+....+...... .+..+.+++ .-..+.|.+.++.+++.+...+++++..|+.+.++. T Consensus 267 ~~d~~g~~~------~~-~~~~~~~~~~~~~~~-~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~ 337 (456) T protein:vir:10 267 NVDENGNAI------DY-ASIFEAAPGALWELP-PGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ 337 (456) T ss_pred ccccccccc------ch-hhhhhhhccccccCC-CCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhcccccCh Confidence 111111110 00 111111111111111 122233333 345678999999999999999999999999876667 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) ||.+++.....+.+.+..++..++++|+++++.++.+.. ......+.|.|.|..+++..+.++.++++++ T Consensus 338 Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g----------~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~ 407 (456) T protein:vir:10 338 SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG----------ESVEDTVDVSFESPDRVTLGEKYSAASLAKA 407 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCcccceeEEecCCCCcCHHHHHHHHHHHHH Confidence 999999999999999999999999999999998865531 1234578999999999999999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCHHHH-HHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWEDEEI-QAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~eeea-~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) +|++|.+++... ++++++++ ++|.+|+++|+... ..++...+.-|+.- T Consensus 408 ~gi~~~~~~~~~--lg~~~~~i~~~e~er~~~e~~~~-~~~~~~~~~~~~~~ 456 (456) T protein:vir:10 408 AGESWASIRRNI--LNYNADQIKQDDLDRAREQITLF-AGNPVQRPQEDGSR 456 (456) T ss_pred cCCChHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHH-hhhhhhcCCCCCCC Confidence 999999987764 47887764 46888998886532 22222221111111 No 53 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=100.00 E-value=3e-36 Score=215.30 Aligned_cols=439 Identities=12% Similarity=0.105 Sum_probs=266.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |+-=-.+.+.+-.++. +...++.+..+.|.+... -...+...++..++.++++|+|+.||+.+|+++ T Consensus 1 ~~t~~~~i~~L~~~~~-----~~~~r~~~l~~Yy~G~~~--------i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l 67 (480) T protein:vir:78 1 MTTYHEHVERLQGLLA-----RDLPNLLEAEAYRNGTRR--------LKTIGIGAPPELAYLDVQPGWVATYLRTLSDRL 67 (480) T ss_pred CCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcccc--------ccccccccchhHhhhhhhcchHHHHHHHHHhhh Confidence 5554443333323332 122333333333433321 112233334444566788999999999999998 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEE-------ECCeEEEEEEcCCeeEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINI-------LNGRPSISVHSSSQFWI 153 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~-------d~~~i~i~~v~ad~~~P 153 (518) +... ++++ +|+..++.|+++++.|+|.....+++..++..|.+++.+|- .+++++|.+++|.+++| T Consensus 68 ~~~g--~~~~-----~d~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p~~~~~ 140 (480) T protein:vir:78 68 DIEG--FRIS-----EDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESPLYMYA 140 (480) T ss_pred ccCc--eecC-----CCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcccceEE Confidence 7554 4443 34456778999999999999999999999999999988873 25789999999999999 Q ss_pred EEEcC---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNN---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 154 ~~~~g---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +|++. +++.++.+.... .+.+. +++.+.+. +..|.+ |+..++.... T Consensus 141 ~~D~~~~~~~~~~i~~~~~~-~~~~~-~~~~~~y~------------~~~~~~--~~~~~~~~~~--------------- 189 (480) T protein:vir:78 141 ELDPRNTRRVTRAVRLYTTR-DDVAV-PDRATLYL------------PDETVP--LRRNGGLNDQ--------------- 189 (480) T ss_pred EEcCCCccceEEEEEEEEee-cCCCc-eEEEEEEe------------CCeEEE--EEecCCCccc--------------- Confidence 99864 344433322111 11121 22233332 233333 2222111100 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHh-ccceeeechhhhcc Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRK 308 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~-g~~ri~v~~~~l~~ 308 (518) | ..+...++++.+.++++.+ .|+...+.|+|+|++.. +++++|++|.++|+++..++. +-+.++|. .+-.. T Consensus 190 ~--~~~~~~~~~~~g~vPvv~f----~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~-G~~~~ 262 (480) T protein:vir:78 190 W--VVDGDVIKHGLGVVPVVPL----TNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVIS-GVTTD 262 (480) T ss_pred c--ccccccccCCCCCcceEEe----ecccccCCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhh-cCCcc Confidence 0 0001123455544333322 36677788999999986 789999999999999998874 33433331 11000 Q ss_pred CCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccc-ccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c Q lcl|Aclame:pro 309 KVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD-FRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V 386 (518) Q Consensus 309 ~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~ 386 (518) ....+.....+....+......+.. .++.+++ ...+.|++.++.++..+...+++++..|+..+.+ . T Consensus 263 ---------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~ 331 (480) T protein:vir:78 263 ---------ELTNDGENTTLDIYYGRILTLASEA--AKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPA 331 (480) T ss_pred ---------ccccccccchhhhhhhhhccCCCCC--ceEEecCccCHHHHHHHHHHHHHHHhcccCCChHHhccccCcch Confidence 0000111111111111111111222 2333433 3578899999999999999999999999875433 5 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) ||.+++.....+..++.+++..+..+|+++++.|+.+.. .........+.|.|.+..+++..+.++.+.++++ T Consensus 332 Sg~Alk~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g-------~~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~ 404 (480) T protein:vir:78 332 SAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMG-------REVTEEYTRLETVWRDPSTPTVAAKADAVSKLYA 404 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCccccceeeeEEecCCCCCCHHHHHHHHHHHHH Confidence 899999999999999999999999999999998876542 1122334568999999999999999999999998 Q ss_pred CC--CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccC---C-----CCchhc-----c----Cc-CCCCC Q lcl|Aclame:pro 467 AL--AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGE---V-----PDPEAI-----G----GM-ETKGG 518 (518) Q Consensus 467 aG--~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~---~-----~dp~~~-----~----~~-~~~gG 518 (518) +| ++|.++++..+ +++++++++ ++++++|++... . .++... | +- +..+| T Consensus 405 ~g~~~~s~et~~~~l--g~~~d~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (480) T protein:vir:78 405 NGQGPIPKEQARIDL--GYTATQREQ-MRDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKTETQTSPSG 473 (480) T ss_pred hccccCCHHHHHhcC--CCCHhHHHH-HHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCccccccCC Confidence 77 79999988764 577766543 334433333210 0 010000 0 00 11111 No 54 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=100.00 E-value=7e-36 Score=213.30 Aligned_cols=438 Identities=11% Similarity=0.074 Sum_probs=266.4 Q ss_pred CCcCchHHHH-HHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRF-IKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~-~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) |+---.+.+. |+.|-+ ...++.+..+.|.+... -..++..-++..++.++.+|+|+.||+.+|++ T Consensus 1 ~~t~~d~i~~L~~~~~~------~~~r~~~~~~Yy~G~~~--------i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~ 66 (480) T protein:vir:78 1 MTTYHEHVERLQGLLAR------DLPNLLEAEAYRNGTRR--------LKTIGIGAPPELAYLDVQPGWVATYLRTLSDR 66 (480) T ss_pred CCCHHHHHHHHHHHHHH------HHHHHHHHHHHHhcccc--------chhcccccchhhhhhhhhcchHHHHHHHHHhh Confidence 5544443333 344421 22222233333333321 11223323344445667899999999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEE-------ECCeEEEEEEcCCeeE Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINI-------LNGRPSISVHSSSQFW 152 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~-------d~~~i~i~~v~ad~~~ 152 (518) |+.+. +.++ +|+..++.|+++++.|+|.....+++..++..|.+++.+|- .+++++|.+++|.+++ T Consensus 67 l~~~g--~~~~-----~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~ 139 (480) T protein:vir:78 67 LDIEG--FRIS-----EDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMY 139 (480) T ss_pred hccCc--eecC-----CCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceE Confidence 97664 4443 34456778999999999999999999999999999998773 3578999999999999 Q ss_pred EEEEcC---cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 153 IDFKNN---EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 153 P~~~~g---~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) |+|++. +++.++.+. ...+....+++.+.+. +..|.+ |+..++.... T Consensus 140 ~i~D~~~~~~~~~~i~~~--~~~d~~~~~~~~~~y~------------~~~~~~--~~~~~~~~~~-------------- 189 (480) T protein:vir:78 140 AELDPRNTRRVTRAVRLY--TTRDDVAVPDRATLYL------------PDETVP--LRRNGGLNDQ-------------- 189 (480) T ss_pred EEEcCCCccceEEEEEEE--EeecCCcceEEEEEEe------------CCeEEE--EEecCCCccc-------------- Confidence 999764 344433322 2222222233444432 222333 2222211100 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhc Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFR 307 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~ 307 (518) + ..+....+++.+.++++.+ .|+...+.|+|+|++.. +++++|++|.+.|+++..++... +.+++. .+-. T Consensus 190 -~--~~~~~~~~~~~g~vPvv~f----~n~~~~~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~-G~~~ 261 (480) T protein:vir:78 190 -W--VVDGDVIKHGLGVVPVVPL----TNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVIS-GVTT 261 (480) T ss_pred -c--cccccccccCCCCcceEEe----ecccccCCccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhh-CCCc Confidence 0 0001123455554444322 36677788999999986 78999999999999999887533 323321 1100 Q ss_pred cCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecc-cccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc- Q lcl|Aclame:pro 308 KKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQG-DFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE- 385 (518) Q Consensus 308 ~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~- 385 (518) .. ...+.+...+....+......++. .++.++ ....+.|.+.++.++..+...+++++..|+..+.+ T Consensus 262 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~ 330 (480) T protein:vir:78 262 DE---------LTNDGENTTLDIYYGRILTLASEA--AKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENP 330 (480) T ss_pred cc---------cccccccchhhhhhhhhccCCCCC--ceEEecCccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCch Confidence 00 000111111211111111111222 233443 23468899999999999999999999999875433 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) .||.+++.....+...+.+++..++.+|+++++.++.+.. .........+.|.|.|..+.+..+.++.+++++ T Consensus 331 ~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~-------~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~ 403 (480) T protein:vir:78 331 ASAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMG-------REVTEEYTRLETVWRDPSTPTVAAKADAVSKLY 403 (480) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCccccceeeeEEecCCCCCCHHHHHHHHHHHH Confidence 5889999999999999999999999999999998776532 112233457999999999999999999999999 Q ss_pred hCC--CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccC---CCCch--hccCc-CCCCC Q lcl|Aclame:pro 466 SAL--AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGE---VPDPE--AIGGM-ETKGG 518 (518) Q Consensus 466 ~aG--~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~---~~dp~--~~~~~-~~~gG 518 (518) ++| ++|.++++..+ ++++++++++ ++++++++... ...+. ..... .+.+| T Consensus 404 ~~g~~~~s~et~~~~l--g~~~d~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (480) T protein:vir:78 404 ANGQGPIPKEQARIDL--GYTATQREQM-RDWDKQETEDMIDTLYSTTKAQADATPKPTVT 461 (480) T ss_pred HhcccCCCHHHHHhcC--CCCHhHHHHH-HHHHHHHHHHHHHHhhccccCCCccccCCCCC Confidence 877 68999887654 5887766554 34433332210 00000 00000 11111 No 55 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=100.00 E-value=1.2e-36 Score=217.61 Aligned_cols=442 Identities=11% Similarity=0.035 Sum_probs=261.0 Q ss_pred CCcCch---HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccC-CCCc-cccceecCchHHHHHHH Q lcl|Aclame:pro 1 MGVWSV---MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQG-YVPT-VHDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~~~~~---~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~-~~~~~~~~~l~~~i~~~ 75 (518) |.=--+ +...|+.|-. +..++.+..+.|.+... ....+.. +... ...+++++|+|+.||+. T Consensus 1 ~~~~t~~~~~~~l~~~~~~------~~~r~~~l~~Yy~g~~~--------i~~~~~~~~~~~~~~~~~~~~n~~~~ivd~ 66 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRIDD------GMSRVRLLARYSNGDAP--------LPELTRNTSAAWRSFQREARTNWGLMVRDS 66 (456) T ss_pred CCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCC--------hhhcCcccChhhchhhhhhhcchHHHHHHH Confidence 111110 1222333321 11122222222222211 1111111 1111 22345788999999999 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWID 154 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~ 154 (518) +|+++++++.++.. . +|...++.+++++++|+|.....+++..++..|.+++.+|.+ +|.++|..++|...+|+ T Consensus 67 ~~~~l~~~g~~~~~--~---~d~~~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~i~~~~p~~~~~i 141 (456) T protein:vir:79 67 VADRIIPNGITVGG--S---ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVS 141 (456) T ss_pred HHhhhccCCeecCC--C---CCccHHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEeccceeEEE Confidence 99999999865543 2 233445678899999999999999999999999999888876 67899999999999999 Q ss_pred EEcCcEEEE-EEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 155 FKNNEPFRF-NFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 155 ~~~g~~~~~-~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) |++.....+ .++......+....+. ..|.. .+.. .|+..-..+..... .... ..... T Consensus 142 ~d~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~-------~~~~~~~~~~~~~~--~~~~-----------~~~~~ 199 (456) T protein:vir:79 142 VDPLQPWRIRSAMRWWRDLDAESDFA-IVWSG-DGWQ-------KFARPCFVQSSSRR--RLVT-----------RISDS 199 (456) T ss_pred EcCCCCCceEEEEEEEEecCCceeEE-EEEcC-CceE-------EEEEEEEeeccccc--eeee-----------ccCCc Confidence 987432221 1111122222222222 22211 1100 01111111111100 0000 00000 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc--ceeeechhh--hccC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK--TKIAASERM--FRKK 309 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~--~ri~v~~~~--l~~~ 309 (518) .......+++...++++++.| +.|+|+|.+.++++|++|.+.|+.....+... .+++..... ...+ T Consensus 200 ~~~~~~~~~~~~~~pvv~~~N----------~~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d 269 (456) T protein:vir:79 200 WVPVGDAVVTGSPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVD 269 (456) T ss_pred eeecccccCCCCceeEEEecC----------CCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCccccccc Confidence 001112344555555544322 45999999999999999999999888765422 222221111 1111 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHH Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKAT 389 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAt 389 (518) ..|..... .+.+....+..... +.+..+.+++ ....+.|.+.++.+++.|...+++++..|+.+.++.||. T Consensus 270 ~~g~~i~~-------~~~~~~~~~~~~~~-~~~~~~~q~~-~~~~~~~~~~l~~~i~~i~~~t~~p~~~~~~~~~N~Sg~ 340 (456) T protein:vir:79 270 ENGNAIDY-------ASIFEAAPGALWEL-PPGVDIWESQ-TNDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAE 340 (456) T ss_pred ccccccch-------hhhhhhhccccccC-CCCcceeeec-ccChHHHHHHHHHHHHHHHhhcCCChhHhcccccCcHHH Confidence 11111000 01111111111111 1122233332 345678999999999999999999999999876677999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 390 EIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALA 469 (518) Q Consensus 390 Ei~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~ 469 (518) +++.....+.+.+..++..++++|+++++.++.+.. ......+.|.|.+..+.+..+.++..++++++|+ T Consensus 341 Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g----------~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~G~ 410 (456) T protein:vir:79 341 GAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG----------ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGE 410 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCccccceEEeCCCCCcCHHHHHHHHHHHHhcCC Confidence 999999999999999999999999999998876531 1233578999999999999999999999999999 Q ss_pred CCHHHHHHHHcCCCCHHHH-HHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 470 MSVEEKVKLIHPKWEDEEI-QAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 470 ~S~~~~v~~~~~~~~eeea-~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|.+++++. ++++++++ ++|.+|+++|.... ..++.+. ..++| T Consensus 411 ~~~~~~~~~--lg~~~~~i~~~e~~r~~~e~~~~-~~~~~~~---~~~~~ 454 (456) T protein:vir:79 411 SWASIRRNI--LNYNADQIKQDDLDRAREQITLF-AGNPVQR---PQEDG 454 (456) T ss_pred ChHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH-hhhHhhc---CCCCC Confidence 999987764 47877654 56788888886543 2233221 22222 No 56 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=100.00 E-value=7.1e-37 Score=218.77 Aligned_cols=439 Identities=13% Similarity=0.080 Sum_probs=262.9 Q ss_pred HHHHHHHHhcCCCChhhHHh----hHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcC Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPEL----IPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISG 82 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~ 82 (518) |+.=|.++-+-+|+ ...++ +.++.+.+.-..++| .+......++...++..++.++++|+|+.||+.+|++++. T Consensus 1 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~rl~~l~~Yy-~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~ 78 (484) T protein:vir:77 1 MTSPLQKQENVDPE-KAREEMLNLFTERTQDLGDNTAYY-ESERRPDAVGVTVPQQMQKLLAHVGYPRLYIDAIAARQEL 78 (484) T ss_pred CCCcccccCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHH-hccccchhcccccchhHHhhhhhcCcHHHHHHHHHhhhcc Confidence 44444444333332 11111 111222221111111 1111111222223344445567899999999999999876 Q ss_pred CcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECC---------eEEEEEEcCCeeEE Q lcl|Aclame:pro 83 KPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG---------RPSISVHSSSQFWI 153 (518) Q Consensus 83 e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~---------~i~i~~v~ad~~~P 153 (518) .. ++++ +++..++.+++++++|+|+....+++..++..|.+++.++.+.+ .++|.+++|...++ T Consensus 79 ~g--~~~~-----~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~ 151 (484) T protein:vir:77 79 EG--FRLG-----GADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPPTNLYA 151 (484) T ss_pred Cc--eecC-----CcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEeccceeEE Confidence 54 4443 23445677899999999999999999999999999999988743 35799999999999 Q ss_pred EEEcC--cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNN--EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 154 ~~~~g--~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) +|++. ++..++.+ +...+.+.++ +.+.+ .+..+ +.+++.++. | T Consensus 152 ~~D~~~~~~~~a~~~--~~~~~~~~~~-~~~~y------------~~~~~-~~~~~~~~~-------------------~ 196 (484) T protein:vir:77 152 QIDPRTRQVMRAIRA--IEDEEGNEVI-GATLY------------LPNNT-VIWNREDGQ-------------------W 196 (484) T ss_pred EecCCCCceEEEEEE--EEeecCCcEE-EEEEE------------ecCeE-EEEEecCCc-------------------e Confidence 98753 33333222 2222211111 11111 12222 222332211 0 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhc-cceeeec----hhh Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEKT-KTKIAAS----ERM 305 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~g-~~ri~v~----~~~ 305 (518) ... ...+++.+.++++.+ .|+...+.|+|+|+|.. +++++|++|.+.|++....+.. -+..+|. +.. T Consensus 197 ~~~---~~~~~~~g~vPvv~f----~N~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~ 269 (484) T protein:vir:77 197 VQV---ANVAHNLEMVPVIPI----PNRTRLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVKGEEL 269 (484) T ss_pred Eee---ccccCCCCCcceEEe----ccccccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCCcchh Confidence 000 012345544333322 35667888999999985 7799999999999999887743 3333321 111 Q ss_pred hccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc Q lcl|Aclame:pro 306 FRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE 385 (518) Q Consensus 306 l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~ 385 (518) ...... + ...+......+ ....+....+..++ ....+.|++.++.+++.+...+++++..|+..+.+ T Consensus 270 ~~~~~~----~-~~~~~~~~~~~-------~~~~~~~~~~~q~~-~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n 336 (484) T protein:vir:77 270 GVDPET----G-QTLFDAYLARI-------LAFEDHESKAQQFS-AAELRNFVDALDALDRKAAAYTGLPPYYLSFSSEN 336 (484) T ss_pred cccccc----c-chhhhhhhhhh-------cccCCCCceeEeec-CCChHHHHHHHHHHHHHHhcccCCCHHHhccccCc Confidence 000000 0 01111111111 11111222233322 33467899999999999999999999999876443 Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 386 -VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNM 464 (518) Q Consensus 386 -~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~ 464 (518) .||.+++.....+.+++..++..++++|+++++.++.+... .........+.|.|.+..+.+..+.++.++++ T Consensus 337 ~~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~l~~~~~~~------~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl 410 (484) T protein:vir:77 337 PASAEAIRSSESRLVKTVERKNKIFGGAWEQAMRVAYKVMNG------GDIPPEYYRMESIWRDPSTPTYAAKADAATKL 410 (484) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCcccccccceEEecCCCCCCHHHHHHHHHHH Confidence 68999999999999999999999999999999988776421 11223345689999999999999999999999 Q ss_pred HhCC--CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhc-c----------CcCCCCC Q lcl|Aclame:pro 465 NSAL--AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAI-G----------GMETKGG 518 (518) Q Consensus 465 ~~aG--~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~-~----------~~~~~gG 518 (518) +++| ++|.+++++.+ ++++++++ |++++++|+........... + ..+..+| T Consensus 411 ~~~g~gi~s~et~~~~l--~~~~~~~~-e~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (484) T protein:vir:77 411 YNNGQGVIPKERARIDM--GYSITERE-EMRKWDEEEQAQGLGLMGTMFGTDPSGGGNPDNPETPEP 474 (484) T ss_pred HhccCCCCCHHHHHhcC--CCChhHHH-HHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCcccc Confidence 9886 89999988764 68877664 56777766533111000000 0 0111111 No 57 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=100.00 E-value=1.6e-35 Score=211.41 Aligned_cols=436 Identities=12% Similarity=0.105 Sum_probs=264.0 Q ss_pred CCc------CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHH Q lcl|Aclame:pro 1 MGV------WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVV 74 (518) Q Consensus 1 ~~~------~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~ 74 (518) +|. .+.+...|+.|.. ...++.+..+.|.+..+ . ...+..-++..++.++.+|+|+.||+ T Consensus 6 ~~~~~~~~~~~~~~~L~~~~~~------~~~r~~~~~~YY~G~~~----i----~~~~~~~~~~~~~~~~~~n~~~~ivd 71 (485) T protein:vir:24 6 PGQEEIADPAIARDEMVSAFED------QNQNLRSNTSYYEAERR----P----EAIGVTVPVQMQSLLAHVGYPRLYVD 71 (485) T ss_pred CCCCcccchHHHHHHHHHHHHH------HHHHHHHHHHHHhccCc----h----hhcCcccchhhhhhhhccchHHHHHH Confidence 555 2333445566632 12223333333333321 1 11112222333445567899999999 Q ss_pred HHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC---------CeEEEEE Q lcl|Aclame:pro 75 VAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN---------GRPSISV 145 (518) Q Consensus 75 ~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~---------~~i~i~~ 145 (518) .+|++|+... |+++ +++..++.+++++++|+|+....+.+..++..|.+++.+|.+. +.++|.. T Consensus 72 ~~~~~l~~~g--~~~~-----~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~ 144 (485) T protein:vir:24 72 SIAERQAVEG--FRLG-----DADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRV 144 (485) T ss_pred HHhhhhccCc--eecC-----CCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEE Confidence 9999997664 5543 2344567789999999999999999999999999999998763 5678999 Q ss_pred EcCCeeEEEEEcC--cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFKNN--EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE 223 (518) Q Consensus 146 v~ad~~~P~~~~g--~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~ 223 (518) ++|...+|+|++. +.+.++.. ....+.+.++ +.+.+. ...+ +.+++.+ +..+. T Consensus 145 ~~p~~~~~i~D~~~~~~~~~~~~--~~~~~~~~~~-~~~~y~------------~~~~-~~~~~~~-~~~~~-------- 199 (485) T protein:vir:24 145 EPPTRMYAEIDPRIGRPAKAIRV--AYDAEGNEIQ-AATLYT------------PNET-FGWFRAE-GEWVE-------- 199 (485) T ss_pred eccceeEEEeeCCcCceeEEEEE--EEeecCCeEE-EEEEEc------------CCcE-EEEEecC-CceEe-------- Confidence 9999999999753 34432221 2222222222 222221 1111 1122221 11100 Q ss_pred ccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhcc-ceeee Q lcl|Aclame:pro 224 QITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEKTK-TKIAA 301 (518) Q Consensus 224 ~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~g~-~ri~v 301 (518) ....+++.+.++++.++ |+.....|+|+|++.. +++++|++|.+.|++....+... +.++| T Consensus 200 -------------~~~~~h~~g~vPvv~f~----n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i 262 (485) T protein:vir:24 200 -------------WFSDPHGLGAVPVVPLP----NRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLI 262 (485) T ss_pred -------------ecccccCCCcccEEEec----cCcccCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhh Confidence 00123444433333333 5567788999999985 78999999999999998777533 33332 Q ss_pred chhhhccC-CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 302 SERMFRKK-VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFN 380 (518) Q Consensus 302 ~~~~l~~~-~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~ 380 (518) . .+-... ..-.+.+ ...+....+......++...+..+ +..-.+.|.+.++.++.++...+++++..|+ T Consensus 263 ~-G~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~q~-~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg 332 (485) T protein:vir:24 263 F-GIKPEEIGVDPETG--------QTLFDAYLARILAFEDAEGKIQQF-SAAELANFTNALDQIAKQVAAYTGLPPQYLS 332 (485) T ss_pred c-cCCccccccccccc--------cchhhhcccceeccCCCCceEEee-cccchHHHHHHHHHHHHHHhcccCCCHHHhc Confidence 1 110000 0000000 011111111111111122223222 2334688999999999999999999999998 Q ss_pred cCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 381 LGNRE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 381 ~d~~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) .++.+ .||.+++.....+.+++++++..++.+|+++++.++.+... .........+.|.|.+..+.+..+.++ T Consensus 333 ~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~------~~~~~d~~~i~v~f~~~~~~s~~~~ad 406 (485) T protein:vir:24 333 TAADNPASAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKG------GDVPPDMLRMETVWRDPSTPTYAAKAD 406 (485) T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCccccceeeEEecCCCCCCHHHHHH Confidence 76433 68999999999999999999999999999999988776431 122334567999999999999999999 Q ss_pred HHHHHHhCC--CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchh-ccCcCCCC-----------------C Q lcl|Aclame:pro 460 TLNNMNSAL--AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEA-IGGMETKG-----------------G 518 (518) Q Consensus 460 ~~~~~~~aG--~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~-~~~~~~~g-----------------G 518 (518) .+.+++++| ++|.+++++.+ +++++++ +|++++++|+......--.. .+..+..+ | T Consensus 407 ~~~kl~~~g~~~~s~et~~~~l--~~~~d~~-~e~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 482 (485) T protein:vir:24 407 AATKLYGNGQGVIPRERARKDM--GYSIAER-EEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPNPTPAPKPQPAIEGG 482 (485) T ss_pred HHHHHHhcccccCCHHHHHhhC--CCCHhHH-HHHHHHHHHHhhhhhhHHHhhcccCCCCCCCCCCCCCCCCccCCCCC Confidence 999999876 79999988653 5777766 46778776654311000000 00000001 1 No 58 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=100.00 E-value=2.2e-35 Score=210.63 Aligned_cols=449 Identities=11% Similarity=0.026 Sum_probs=260.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCc--cccceecCchHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPT--VHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~l~~~i~~~~A~ 78 (518) +-....+...++.|++--- .+..++.++.+.|.+.+. .. ..++..++. ...++.++|+|+.||+.+|+ T Consensus 22 ~~~~~~~~~l~~~l~~~~~--~~~~rl~~l~~YY~G~~~----~~----~~~~~~~~~~~~~~~~~v~n~~~~ivd~~a~ 91 (501) T protein:vir:25 22 SMSREQLGALVADMWRLHI--SERQWLDRIYEYTKGLRG----RP----EVPEGASDEVKELAKLSVKNVLSLVRDSFAQ 91 (501) T ss_pred cCChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCC----ch----hccccCChhhhhhHhhhhcChHHHHHHHHHh Confidence 2233333333444432100 122233333333333211 00 001111111 12345678999999999999 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g 158 (518) +++-+ .++++. ...++.++++++.|+|.....+++..++..|.+++.+|.+++..+|.+++|...+++|.+. T Consensus 92 ~l~~~--gf~~~d------~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de~~~~i~~~sp~~~~~iy~D~ 163 (501) T protein:vir:25 92 NLSVV--GYRNAL------AKENDPAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTDEGPVFRTRSPRQILAVYADP 163 (501) T ss_pred hhccc--ceecCC------ccchHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCCeEEEeccccEEEEEecC Confidence 98754 455532 1224557888999999999999999999999999999988777789999999999999763 Q ss_pred c----EEEEEEEEEEEec-CceEEEEEEEEeecccceeeeeeccceEEE----EEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 159 E----PFRFNFFEEIPTS-NKADIYYLVESREIKQWDKEGKKLSGGFVT----YSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 159 ~----~~~~~f~~~~~~~-~~~~~y~~lE~he~~~~~~~~~~~~~~~I~----n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) . ...++........ ++..+. ++ +.+..|. +.++......... ... ..... T Consensus 164 ~~~~~~~~ai~~~~~~~~~~~~~~~---~~------------y~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~- 222 (501) T protein:vir:25 164 SVDAWPQYALETWVAQKDAKPHRRG---VL------------YDDTYMYELDLGEVVLGDAGGGQA-TQQ----PVNVR- 222 (501) T ss_pred CCCcceeEEEEEEeeccccCcceeE---EE------------ecCeeEEEEecCceeeeecccccc-ccc----ccccc- Confidence 2 3333333222211 111110 00 0011110 0000000000000 000 00000 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccC Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKK 309 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~ 309 (518) ...+..+....+++.+..+++.+ +|+.. .+++|+|+|+..++++|++|.+.|+.....+....+ .-++... T Consensus 223 ~~~~~~~~~~~~~~~~~vPiv~f----~N~~~-~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p----~~~i~G~ 293 (501) T protein:vir:25 223 EVTDVIEHGATFEGKPVCPVVRF----VNGRD-ADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANP----QRVISGW 293 (501) T ss_pred ccccccccccccCCccceeeEec----cCccc-cCccccchhhhhHHHHHHHHHHHHHHHHHHHhhccH----HHHHhCC Confidence 00000011112334333333222 34443 367899999999999999999999998887654332 2222111 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHH Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKAT 389 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAt 389 (518) . ......+.... +......++...+..+ +....+.|.+.++.+++.|+..+++++..|+...++.+|. T Consensus 294 ~----~~~~~~~~~~~-------~~i~~~~~~~~~~~q~-~~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~Sg~ 361 (501) T protein:vir:25 294 T----GSKAEVLKASA-------LRVWTFEDPEVKAQAF-PPASVEPYNLILEEMLQHVAMVAQISPAQVTGKMINVSAE 361 (501) T ss_pred C----CCccchhhhcc-------cceeccCCCCceEEEe-cccChHHHHHHHHHHHHHHHhhcCCChhhhccccCChHHH Confidence 1 00000111111 1111111222223222 3444678999999999999999999999998765567999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 390 EIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALA 469 (518) Q Consensus 390 Ei~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~ 469 (518) +++.....+.+++.+++..++.+|+++++.++.+.. .........++|.|.+..+.+..+.++.+++++++|+ T Consensus 362 Al~~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~~~~-------~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi 434 (501) T protein:vir:25 362 ALAAAEANQQRKLAAKRESFGESWEQLLRLAAEMDD-------DPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI 434 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC Confidence 999999999999999999999999999998876642 1112234679999999999999999999999998885 Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccC-------------------CCCchhccCcCCCCC Q lcl|Aclame:pro 470 MSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGE-------------------VPDPEAIGGMETKGG 518 (518) Q Consensus 470 ~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~-------------------~~dp~~~~~~~~~gG 518 (518) |.++.+.+ .|++++++++++.++.+++++... .+++...|+-++.|| T Consensus 435 -s~et~~~~-~~g~~~~~ie~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 500 (501) T protein:vir:25 435 -PIEHLLSM-VPGMTQQTIQAIKDSLRGGEVKSLVDKLLSNEPAPVPPPPPQAAAQALNEGGVNGNGG 500 (501) T ss_pred -CHHHHHHH-cCCCCHHHHHHHHHHHHHHhHHHHHHHhhccCcCCCCCCCCCCCccccccccCCCCCC Confidence 88887765 578998887665555544443110 011234445555555 No 59 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=100.00 E-value=7.4e-35 Score=207.69 Aligned_cols=436 Identities=12% Similarity=0.084 Sum_probs=262.8 Q ss_pred CC----cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHH Q lcl|Aclame:pro 1 MG----VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVA 76 (518) Q Consensus 1 ~~----~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~ 76 (518) |. ....+.+.++.|-. ...++.+..++|.+..+- ...+...++..++.++.+|+|+.||+.+ T Consensus 8 ~~~~~~~~~~~~~l~~~~~~------~~~r~~~~~~Yy~G~~~i--------~~~~~~~~~~~~~~~~~~n~~~~ivd~~ 73 (485) T protein:vir:10 8 QEEIEDPAIARDEMVSAFED------STQNLKTNTSYYEAERRP--------EAIGVTVPIQMQSLLAHVGYPRLYVDSI 73 (485) T ss_pred CCCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCcc--------hhcCCCCChhhhhhhhhcCcHHHHHHHH Confidence 11 11224445555532 112223333333333211 1112222333344456789999999999 Q ss_pred HHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE---------CCeEEEEEEc Q lcl|Aclame:pro 77 AEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL---------NGRPSISVHS 147 (518) Q Consensus 77 A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d---------~~~i~i~~v~ 147 (518) |++|+.. .|+++ +++..++.+++++++|+|+....+++..++..|.+++.+|.+ ++.++|.+++ T Consensus 74 ~~~l~~~--g~~~~-----~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~ 146 (485) T protein:vir:10 74 AERQAVE--GFRFG-----DADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEP 146 (485) T ss_pred Hhhhccc--ceecC-----CCchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEc Confidence 9999654 35543 233456778999999999999999999999999999998865 3578899999 Q ss_pred CCeeEEEEEc--CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccc Q lcl|Aclame:pro 148 SSQFWIDFKN--NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQI 225 (518) Q Consensus 148 ad~~~P~~~~--g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~ 225 (518) |..++++|++ ++....+.. ....+.+. +++++++. +..|.+ +++ .++.... T Consensus 147 p~~~~~~~D~~~~~~~~~~~~--~~~~~~~~-~~~~~~y~------------~~~~~~-~~~-~~~~~~~---------- 199 (485) T protein:vir:10 147 PTRMYAEIDPRIGRVSKAIRV--AYDAEGNE-IQAATLYT------------PNDIFG-WYR-VENEWQE---------- 199 (485) T ss_pred cceeEEEEcCCCCceeEEEEE--EEeeCCCe-EEEEEEEe------------CCeEEE-EEE-cCCceEE---------- Confidence 9999999975 333332222 22222222 22223222 222221 112 1111100 Q ss_pred ccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhccc-eeeech Q lcl|Aclame:pro 226 TSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEKTKT-KIAASE 303 (518) Q Consensus 226 ~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~ 303 (518) ....+++.+.++++.+ +|+..++.|+|+|++.+ +++++|++|.+.|++.+..+...- ..+|. T Consensus 200 -----------~~~~~~~~g~vPvv~~----~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~- 263 (485) T protein:vir:10 200 -----------WFNNPHGLGVVPVVPI----PNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIF- 263 (485) T ss_pred -----------eccccCCCCcccEEEe----ccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHh- Confidence 0012344444444333 36678889999999986 689999999999999987764332 22221 Q ss_pred hhhccC-CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccC Q lcl|Aclame:pro 304 RMFRKK-VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLG 382 (518) Q Consensus 304 ~~l~~~-~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d 382 (518) .+-... ....+.+ ...+..... .+. ...+....+.+++ .-..+.|.+.++.+++.+...+++++..|+.. T Consensus 264 G~~~~~~~~~~~~~-~~~~~~~~~---~i~----~~~~~d~k~~q~~-~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~ 334 (485) T protein:vir:10 264 GIKPEEIGVDPETG-QTLFDAYLA---RIL----AFEDAEGKIQQFS-AAELANFTNALDQIAKQVAAYTGLPPQYLSTA 334 (485) T ss_pred cCCccccccccccc-chhhhhccc---cee----ccCCCCceEEeec-ccchHHHHHHHHHHHHHHhcccCCCHHHhccc Confidence 110000 0000000 001111000 111 1111122232222 33467899999999999999999999999876 Q ss_pred Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 383 NRE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTL 461 (518) Q Consensus 383 ~~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~ 461 (518) +.+ .+|.+++.....+..++++++..++.+|+++++.++.+... .........+.|.|.+..+.+..+.++.+ T Consensus 335 ~~n~~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l~~~~~~~------~~~~~~~~~i~v~w~~~~~~~~~~~ada~ 408 (485) T protein:vir:10 335 ADNPASAEAIRAAESRLIKKVERKNSIFGGAWEEAMRLAYRMMKG------GDVPPDMLRMETVWRDPSTPTYAAKADAA 408 (485) T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCcccceeeeEEecCCCCCCHHHHHHHH Confidence 543 58999999999999999999999999999999988766421 11223345789999999999999999999 Q ss_pred HHHHhCC--CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccC--------CCCc----------hhccCcCCCCC Q lcl|Aclame:pro 462 NNMNSAL--AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGE--------VPDP----------EAIGGMETKGG 518 (518) Q Consensus 462 ~~~~~aG--~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~--------~~dp----------~~~~~~~~~gG 518 (518) .+++++| ++|.+++++.+ +++++++ +|++++++|+.... .+.+ .....-+..|| T Consensus 409 ~kl~~ag~~~~s~et~~~~l--g~~~~~~-~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (485) T protein:vir:10 409 SKLYNGGTGVIPRERARKDM--GYSIAER-EEMRRWDEEEAAMGLGLIGTMVDPNPTVPGSPSPAPAPKPAALESGG 482 (485) T ss_pred HHHHhccccCCCHHHHHHhC--CCCHhHH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCcCCCCCC Confidence 9999987 89999988653 6888776 46677766553210 0000 00000112223 No 60 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=100.00 E-value=1.1e-34 Score=206.78 Aligned_cols=438 Identities=13% Similarity=0.114 Sum_probs=263.3 Q ss_pred CCcC------chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHH Q lcl|Aclame:pro 1 MGVW------SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVV 74 (518) Q Consensus 1 ~~~~------~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~ 74 (518) +|.. ..+...|+.|-. +..++.+..+.|.+..+- . ..+..-++..++.++.+|+|+.||+ T Consensus 6 ~~~~e~~~~~~~~~~l~~~~~~------~~~r~~~l~~YY~G~~~i----~----~~~~~~~~~~~~~~~v~n~~~~iVd 71 (486) T protein:vir:42 6 PGMEEIEDPAVVREEMISAFED------ASKDLASNTSYYDAERRP----E----AIGVTVPREMQQLLAHVGYPRLYVD 71 (486) T ss_pred CCCCCcccHHHHHHHHHHHHHH------HHHHHHHHHHHhcccCcc----h----hcccccchhHhhhhhccchHHHHHH Confidence 4442 234455566632 222232333333333211 0 0111112222333557899999999 Q ss_pred HHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE---------CCeEEEEE Q lcl|Aclame:pro 75 VAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL---------NGRPSISV 145 (518) Q Consensus 75 ~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d---------~~~i~i~~ 145 (518) .+|+.++.. .+++++ ++..++.+++++++|+|.....+.+..++..|.+++.++.+ ++.++|.. T Consensus 72 ~~~~~l~~~--g~~~~~-----~~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~ 144 (486) T protein:vir:42 72 SVAERQAVE--GFRLGD-----ADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRV 144 (486) T ss_pred HHHhhhccc--ceecCC-----CchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEE Confidence 999998544 455542 33455678899999999999999999999999999988753 45689999 Q ss_pred EcCCeeEEEEEcC--cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFKNN--EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE 223 (518) Q Consensus 146 v~ad~~~P~~~~g--~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~ 223 (518) ++|...+++|++. ++...+ ......+.+.+ ++.++. .+..+.+. ... ++... T Consensus 145 ~~p~~~~~i~d~~~~~~~~~~--~~~~~~~~~~~-~~~~~y------------~~~~~~~~-~~~-~~~~~--------- 198 (486) T protein:vir:42 145 EPPTRMHAEIDPRINRVSKAI--RVAYDKEGNEI-QAATLY------------TPMETIGW-FRA-DGEWA--------- 198 (486) T ss_pred ecccceEEEEeCCCCCeEEEE--EEEEecCCCeE-EEEEEE------------cCCcEEEE-Eec-CCcEE--------- Confidence 9999999999753 333333 22233332222 222221 12222211 111 11100 Q ss_pred ccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhccceeeec Q lcl|Aclame:pro 224 QITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEKTKTKIAAS 302 (518) Q Consensus 224 ~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~g~~ri~v~ 302 (518) ....++++.+.++++-+ .|+...+.|+|+|+++. +++++|++|.+.|++....+...-++.+- T Consensus 199 ------------~~~~~~h~~g~vPvv~~----~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i 262 (486) T protein:vir:42 199 ------------EWFNVPHGLGVVPVVPL----PNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLI 262 (486) T ss_pred ------------eecceecCCCCceEEEe----ccccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHh Confidence 00112344444333322 36678889999999995 77999999999999988766433222111 Q ss_pred hhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccC Q lcl|Aclame:pro 303 ERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLG 382 (518) Q Consensus 303 ~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d 382 (518) ..+-........... ...+....+......++...+..+ +....+.|.+.++.+++++...+++++..|+.. T Consensus 263 ~G~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~ 334 (486) T protein:vir:42 263 FGIKPEEIGVDSETG-------QTLFDAYLARILAFEDAEGKIQQF-SAAELANFTNALDQIAKQVAAYTGLPPQYLSTA 334 (486) T ss_pred hcCCccccccccccc-------cchhhhhhchhcccCCCCceEEee-cccCHHHHHHHHHHHHHHHhcccCCCHHHhccc Confidence 111000000000000 011111111111111222223333 344578999999999999999999999999875 Q ss_pred Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 383 NRE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTL 461 (518) Q Consensus 383 ~~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~ 461 (518) ..+ .||.+++...+.+..++.+++..++.+|+++++.++.+... .........+.|.|.+..+.+..+.++.. T Consensus 335 ~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~------~~~~~d~~~i~v~w~~~~~~s~~~~ad~~ 408 (486) T protein:vir:42 335 ADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMKG------GDVPPDMLRMETVWRDPSTPTYAAKADAA 408 (486) T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCccccceeeeEEecCCCCCCHHHHHHHH Confidence 433 68999999999999999999999999999999988776421 11223346789999999999999999999 Q ss_pred HHHHhC--CCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCC--------Cc------------hhccCcCCCCC Q lcl|Aclame:pro 462 NNMNSA--LAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVP--------DP------------EAIGGMETKGG 518 (518) Q Consensus 462 ~~~~~a--G~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~--------dp------------~~~~~~~~~gG 518 (518) ++++++ |++|.++.+.. + +++++++ +|++|+++|+...... .+ ..--+-+..|| T Consensus 409 ~kl~~~~~g~~s~et~~~~-l-g~~~d~~-~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (486) T protein:vir:42 409 TKLYGNGQGVIPRERARID-M-GYSVKER-EEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTAPPKPQPAIESSGG 484 (486) T ss_pred HHHHhcccCCCCHHHHHhc-C-CCChhHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcccCCCCC Confidence 999987 68999998764 3 5877765 4788887766421100 00 00001122222 No 61 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=100.00 E-value=5.2e-34 Score=203.05 Aligned_cols=414 Identities=11% Similarity=0.041 Sum_probs=244.7 Q ss_pred hccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcC Q lcl|Aclame:pro 33 LVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDN 112 (518) Q Consensus 33 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~ 112 (518) ..+-+.+. .-+..+++.++|+|+.|++.++++++-. .|+++ |...++.+++++++|+ T Consensus 1 ~l~~~~~~---------------~~~~~~~~~v~n~~~~ivd~~~~~l~~~--gf~~~------d~~~~~~~~~i~~~N~ 57 (434) T protein:vir:98 1 MLPKNAEQ---------------AFLDFQRKARTNFCGLIANASVHRLLAL--GVTGP------DGEPDTRASRWWQANR 57 (434) T ss_pred CCCCCccH---------------HHHHhhhhhhccchHHHHHHHHhhhccC--ceecC------CCchHHHHHHHHHhcC Confidence 01111100 0011224457899999999999988654 45542 2234677889999999 Q ss_pred hHHHHHHHHHHHHhhCCEEEEEEEEC--------CeEEEEEEcCCeeEEEEEc--CcEEEEEEEEEEEecCceEEEEEEE Q lcl|Aclame:pro 113 FDSKSVKIVELAGGSGVSAVKINILN--------GRPSISVHSSSQFWIDFKN--NEPFRFNFFEEIPTSNKADIYYLVE 182 (518) Q Consensus 113 f~~~~~~~~e~~~a~G~~~~k~~~d~--------~~i~i~~v~ad~~~P~~~~--g~~~~~~f~~~~~~~~~~~~y~~lE 182 (518) |.....+++..++..|.+++.++.+. ..+.|.+++|.+++++|++ +++..+++... ....+..+..+. T Consensus 58 ~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~--~~~~~~~~~~~~ 135 (434) T protein:vir:98 58 LDSRQKLVWRMAMAQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWH--NDIDGFGYARVF 135 (434) T ss_pred hhHHHHHHHHHHhhcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEE--eccCCceEEEEE Confidence 99999999999999999999998653 2578999999999999976 34444443322 211111222111 Q ss_pred EeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCcccc Q lcl|Aclame:pro 183 SREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYP 262 (518) Q Consensus 183 ~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~ 262 (518) ++ +..++. .++........ .. .....+... .....+++.+..+++-+ .||... T Consensus 136 ~~------------~~~~~~--~~~~~~~~~~~--~~------~~~~~~~~~-~~~~~~h~~g~vPvv~f----~N~~~~ 188 (434) T protein:vir:98 136 FD------------DTSFPY--RTRERTGARLP--WG------PDSWVYTGT-ADSGDVHDLGGMQLVEF----ARMPDL 188 (434) T ss_pred Ee------------CcEEEE--EEeeccccccc--cc------cccceeccc-ccccccCCCCccceEEe----ccCCCc Confidence 11 111111 11111110000 00 000001110 01112334433333222 244343 Q ss_pred CCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCC Q lcl|Aclame:pro 263 HLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKL 341 (518) Q Consensus 263 ~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~-g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~ 341 (518) +. .|+|+|...++++|++|.++|+.....+. +-+..++.-.-+....+..+. .. ...+.+....+......+. T Consensus 189 ~~-~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~-~~----~~~~~~~~~~~~i~~~~~~ 262 (434) T protein:vir:98 189 GE-DPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWIKGHKFAKRTDPATG-MT----VVDQPFVPSPSAVWASEGE 262 (434) T ss_pred Cc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCcccccccccc-cc----hhhhhhhccccccccCCCC Confidence 33 59999999999999999999999998875 444444421111111111110 00 0011222211111111122 Q ss_pred CccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 342 NDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFL 421 (518) Q Consensus 342 ~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il 421 (518) ...+..++ ....+.|.+.++.+++.++..+++++..|+.+.+..+|.+++.....+.+++.++++.++.+|+++++.++ T Consensus 263 ~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~~~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~ 341 (434) T protein:vir:98 263 NTQFGQLD-ATDLSGFLKEHASDVRDMLTISQTPTYLYATDLVNISADTIGALDILHVAKVREHIASFSEGLESVLALAA 341 (434) T ss_pred CceEEEec-CcchHHHHHHHHHHHHHHhcccCCCHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22232222 44578899999999999999999999999876667799999999999999999999999999999998876 Q ss_pred HHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhcc- Q lcl|Aclame:pro 422 YLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENA- 500 (518) Q Consensus 422 ~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~- 500 (518) .+. +.......+.|.|.+..+++..+.++.+++++++|+ |.++.+.+ . +++++++++..++..++.. T Consensus 342 ~~~---------g~~~~~~~~~v~w~~~~~~s~~~~ada~~kl~~~g~-~~e~~~~~-l-g~~~~e~~r~~~e~~~~~~~ 409 (434) T protein:vir:98 342 AQA---------GVPEDYTEAEVRWANPAHVTMAVKADAATKLKSIGY-PLDVIAEE-L-DESPARVRRIVAGAASQALL 409 (434) T ss_pred Hhc---------CCChhheeeeEEecCCCCCCHHHHHHHHHHHHhcCC-cHHHHHHh-C-CCCHHHHHHHHHHHHHHHHH Confidence 552 223345679999999999999999999999998885 77765554 3 4677666554444333211 Q ss_pred ----ccCCCCchhccCcCCCCC Q lcl|Aclame:pro 501 ----IGEVPDPEAIGGMETKGG 518 (518) Q Consensus 501 ----~~~~~dp~~~~~~~~~gG 518 (518) .....+|. .|.-...|| T Consensus 410 ~~~~~~~~~~~~-~g~~~~~~~ 430 (434) T protein:vir:98 410 AASLLPAPGAPS-AGNVPDSGG 430 (434) T ss_pred HHhhhccCCCCC-CCCCCcccC Confidence 11112332 222222333 No 62 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=100.00 E-value=1.2e-33 Score=201.06 Aligned_cols=422 Identities=10% Similarity=-0.009 Sum_probs=255.0 Q ss_pred cCch----HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHH Q lcl|Aclame:pro 3 VWSV----MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 3 ~~~~----~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ 78 (518) +..+ +.+.|+.|-+.. .++.+..+.|.+.++ ...++...++..+..++++|+|+.||+..|+ T Consensus 1 ~~~~~~~~i~~l~~~~~~~~------~r~~~l~~Yy~G~~~--------i~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~ 66 (441) T protein:vir:80 1 MNSDELALIEGMYDRIQRLS------SWHCCIEGYYEGSNR--------VRDLGVAIPPELQRVQTVVSWPGIAVDALEE 66 (441) T ss_pred CCccHHHHHHHHHHHHHHHH------HHHHHHHHHHhcCCc--------chhcCcccchhhhhhhhhcchHHHHHHHHHh Confidence 4444 455555553211 112222222333211 1122333334445667889999999999999 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEc Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN 157 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~ 157 (518) +++.. .|+++ ++ +.+++++++|+|+....+++..++..|.+++.+|.+ +|+++|.+++|.+++|+|.+ T Consensus 67 ~l~~~--g~~~~-----d~----~~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~i~~~~p~~~~~i~d~ 135 (441) T protein:vir:80 67 RLDWL--GWTNG-----DG----YGLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTVSVRPQSPKNCTGKFSA 135 (441) T ss_pred hhccc--cccCC-----Ch----HHHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceEEEEEccceEEEEEeC Confidence 98533 44432 22 347788889999999999999999999999999986 57899999999999999976 Q ss_pred C--cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 158 N--EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 158 g--~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) . +...++... ...+....+ .+ .+.+..|.+ |...+.... ..+ T Consensus 136 ~~~~~~~~~~~~--~~~~~~~~~--~~------------vy~~~~~~~--~~~~~~~~~-----------------~~~- 179 (441) T protein:vir:80 136 DGSRLDAGLVVQ--QTCDPEVVE--AE------------LLLPDVIVQ--VERRGSREW-----------------VEV- 179 (441) T ss_pred CCCceeEEEEEE--EEecCceEE--EE------------EEecCeEEE--EEEcCCcce-----------------eec- Confidence 4 333322211 111111111 11 111222322 222221100 000 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCc Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKST 314 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~ 314 (518) ...+++.+..+++.+ .|+.....|+|.|++.. +++++|++|.+.|++.+..+....++.+-..+-... T Consensus 180 --~~~~~~~g~vPvv~~----~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~G~~~~~----- 248 (441) T protein:vir:80 180 --DRIPNVLGAVPLVPI----VNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFYAYPQRWVTGVSADE----- 248 (441) T ss_pred --cccccCCCceeEEEe----eccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCceeeeecCCccc----- Confidence 012344443333322 35667788999999975 789999999999999998875443333222210000 Q ss_pred cccccCCCcchhheeeecCCcCCCCCCCccceEecc-cccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQG-DFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIW 392 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~ 392 (518) .....+......+..+. .+.+ ...+++.+. .--.+.|++.++.+++.+...+++++..|+..+.. .||.+++ T Consensus 249 -~~~~~~~~~~~~i~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~~~~Sg~Al~ 322 (441) T protein:vir:80 249 -FSQPGWVLSMASVWAVD----KDDD-GDTPNVGSFPVNSPTPYSDQMRLLAQLTAGEAAVPERYFGFITSNPPSGEALA 322 (441) T ss_pred -cccchhhhcccccccCC----CCCC-CCcceeEecCccchHHHHHHHHHHHHHHhcccCCCHHHhccCCCcchHHHHHH Confidence 00000111111111111 1111 122444332 33578899999999999999999999999886654 4899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCC--C Q lcl|Aclame:pro 393 SLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALA--M 470 (518) Q Consensus 393 s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~--~ 470 (518) .....+..++..++..++.+|+++++.++.+... .......-..++|.|.+.++++..+.++.+++++++|+ + T Consensus 323 ~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~-----~~~~~~~~~~i~~~f~~~~~~~~~e~ad~~~kl~~~g~~~~ 397 (441) T protein:vir:80 323 AEESRLVKRAERRQTSFGQGWLSVGFLAAKALDS-----RVDEADFFGDVGLRWRDASTPTRAATADAVTKLVGAGILPA 397 (441) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcccccceeeeEEeCCCCCcCHHHHHHHHHHHHhcCcccc Confidence 9999999999999999999999999987765321 12222233578999999999999999999999999996 4 Q ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHhcccc-------CCCCchhc Q lcl|Aclame:pro 471 SVEEKVKLIHPKWEDEEIQAEVKRIYLENAIG-------EVPDPEAI 510 (518) Q Consensus 471 S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~-------~~~dp~~~ 510 (518) |.++++..+ +++++++++ +++.++|+... ...+|+.+ T Consensus 398 s~~~~~~~l--~~~~~e~~~-~~~e~~e~~~~~~~~~~~~~~~~~~~ 441 (441) T protein:vir:80 398 DSRTVLEML--GLDDVQVEA-VMRHRAESSDPLAVLAGAISRQTNEV 441 (441) T ss_pred cHHHHHHhC--CCCHHHHHH-HHHHHHHHHHHHHHHhhhhhcccccC Confidence 677766543 466655542 33333322111 11112222 No 63 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=100.00 E-value=1.4e-34 Score=206.22 Aligned_cols=431 Identities=12% Similarity=0.036 Sum_probs=246.8 Q ss_pred CCcCc-hH-----HHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc-ccceecCchHHHHH Q lcl|Aclame:pro 1 MGVWS-VM-----TRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-HDKLMNSGTGNEIV 73 (518) Q Consensus 1 ~~~~~-~~-----~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~l~~~i~ 73 (518) =.+.. .+ .+-|+.|-. ...++.+..++|.+... . ..........+.. -.+++++|+|+.|| T Consensus 7 ~~l~~~~~~~~~~~~l~~~~~~------~~~r~~~~~~YY~g~~~----i--~~~~~~~~~~~~~~~~~~~~~n~~~~iV 74 (479) T protein:vir:99 7 EDLSSEGLAKYLETKVFPKMNT------ECERLDDFEAWTKNGQE----V--PDLATRHKNKEREVLQQLSRKPWMGLMV 74 (479) T ss_pred ccCChhHHHHHHHHHHHHHHHH------HhHHHHHHHHHHhcCCc----c--cccccccCChhHHHHHHHhhcCcHHHHH Confidence 00000 01 111222211 11112222222222211 0 0000000011111 12234789999999 Q ss_pred HHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEE-----E-CCeEEEEEEc Q lcl|Aclame:pro 74 VVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINI-----L-NGRPSISVHS 147 (518) Q Consensus 74 ~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~-----d-~~~i~i~~v~ 147 (518) +.+|+.++-+ .|++.. ...++.+++++++|+|+....+.+..++..|.+++.+|. | .+.++|..++ T Consensus 75 d~~~~~l~~~--gf~~~d------~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~~i~~~~ 146 (479) T protein:vir:99 75 NSFAQQLIVD--GYRKTG------TNENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVARIKCID 146 (479) T ss_pred HHHHhhcccc--cccCCC------chhhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCceEEEEec Confidence 9999998754 455431 223456788999999999999999999999998887773 2 3678999999 Q ss_pred CCeeEEEEEcCcEE-EEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccc Q lcl|Aclame:pro 148 SSQFWIDFKNNEPF-RFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQIT 226 (518) Q Consensus 148 ad~~~P~~~~g~~~-~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~ 226 (518) |.+.+|+|.+.... ..+|..+........+|+. ..+ ..|....+... T Consensus 147 p~~~~~iydd~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~--~~~~~~~~~~~------------ 194 (479) T protein:vir:99 147 PRDAFAIWEDPYWDEWPKYLLERQPNGQYWWWTE------------------EDY--SIFEFKQGKFI------------ 194 (479) T ss_pred hhheEEEecCCcccceeeEEEeecCceeEEEEec------------------ceE--EEEEecCCcee------------ Confidence 99999999775432 2334332222222112211 001 11211111100 Q ss_pred cccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhh Q lcl|Aclame:pro 227 SYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMF 306 (518) Q Consensus 227 ~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l 306 (518) + ....+++.+.++++.++ |+... .+.|+|+|.+.++++|++|.+.|++....+....++.+-..+. T Consensus 195 ----~-----~~~~~h~~g~vPvv~f~----n~~~~-~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~ 260 (479) T protein:vir:99 195 ----Y-----RETVSHDYGHIPFVRYV----NVMDL-RGVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLM 260 (479) T ss_pred ----e-----ccccccCCCCcceEEee----cCCCc-CcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCC Confidence 0 01123444433333322 33333 4679999999999999999999999998875444332222221 Q ss_pred ccCCCCCccccccCCCcc-hhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc Q lcl|Aclame:pro 307 RKKVNKSTDKEEWSMNVD-EDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE 385 (518) Q Consensus 307 ~~~~~~~~~~~~~~~d~d-~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~ 385 (518) ..+.... .... +... .++. . . .+.+..+..++ ..-.+.|.+.++.++..|...+++++..||+.+ + T Consensus 261 ~~~~~~~-~~~~--~~~~~~~i~----~--~--~~~~~~~~q~~-~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g~~~-n 327 (479) T protein:vir:99 261 LPEGANA-DQEK--MRFAQESML----I--S--QNEKASFGAIP-AAPLDGLLNAYKESLLEFLALAQLPPHIAGQIV-N 327 (479) T ss_pred ccccccc-chhc--cccccccce----e--e--cCCCceEEEec-ccchHHHHHHHHHHHHHHhccCCCCHHHccccc-c Confidence 1111100 0000 1100 1111 1 1 11222333333 445789999999999999999999999998643 3 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) .||.+++.....+..++..+++.+..+|+++++.++.+.. .......+.++|.|.+..+++..+.++.+++++ T Consensus 328 ~Sg~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~-------~~~~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~ 400 (479) T protein:vir:99 328 VAADALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKIEG-------RTEEATDLDFTITWQDVTIQSLAQFADAWAKMV 400 (479) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCccccceeeeEEecCCCCCCHHHHHHHHHHHH Confidence 6899999999999999999999999999999998876532 112234467999999999999999999999999 Q ss_pred hCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhcccc-------CCCCch--------------------hccCcCCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIG-------EVPDPE--------------------AIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~-------~~~dp~--------------------~~~~~~~~gG 518 (518) ++|++|.++.+++ +|++++++++++-+..+++++.. ..++|. ..-.+|.-|| T Consensus 401 ~ag~is~et~l~~-l~gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (479) T protein:vir:99 401 ESLKIPAEGVWDM-IPNLDQSTVNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATNMQQANNKTGEPASLNKSGA 479 (479) T ss_pred hcCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCCCCCCCCCCcchhccCCCCC Confidence 9999999999876 57888876653322211111100 001110 0001111111 No 64 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=100.00 E-value=5.2e-33 Score=197.56 Aligned_cols=443 Identities=10% Similarity=-0.026 Sum_probs=257.7 Q ss_pred CCcCch----HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHH Q lcl|Aclame:pro 1 MGVWSV----MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVA 76 (518) Q Consensus 1 ~~~~~~----~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~ 76 (518) -|+... |.+.|+.|.+-.| ++.+..++|.+.+ ....++...++..++.+.++|+|+.||+.+ T Consensus 16 ~~l~~~e~~~i~~L~~~~~~~~~------r~~~l~~YY~G~~--------~i~~~~~~~p~~~~~~~~v~n~~~~iVd~~ 81 (504) T protein:vir:99 16 PELNDDVVDKVNGLYQQLVDRTP------RNLLRASFYDGKY--------AIRQIGNLIPPEYLRTATVLGWSAKAVDTL 81 (504) T ss_pred CCCCHHHHHHHHHHHHHHHHHhH------HHHHHHHHHhccc--------cchhccccccHHHHHHhhccCcHHHHHHHH Confidence 444433 3344444532111 1111111222221 112233333333444556899999999999 Q ss_pred HHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC-C--eEEEEEEcCCeeEE Q lcl|Aclame:pro 77 AEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN-G--RPSISVHSSSQFWI 153 (518) Q Consensus 77 A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~-~--~i~i~~v~ad~~~P 153 (518) |+.++-+ .|.++ +++..++.++++.+.|+|.....+++..++..|.+++.++-+. + .+.|..++|.+.+. T Consensus 82 a~rl~~~--Gf~~~-----d~~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~~ 154 (504) T protein:vir:99 82 ARRCNLE--SFVWP-----DGDYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQATG 154 (504) T ss_pred Hhhhccc--eeeCC-----CCChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeEE Confidence 9988655 34443 2334456788999999999999999999999999998887653 3 46899999999999 Q ss_pred EEEcC--cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNN--EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 154 ~~~~g--~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) +|++. ++..++++...... + .++..+.+ .++.|.+... +++. ... T Consensus 155 iyD~~~~~~~~a~~~~~~d~~--g-~~~~~~~y------------~~~~~~~~~~--~~~~-~~~--------------- 201 (504) T protein:vir:99 155 EWNSRRNAMDSLLSITSRDAE--G-HPTGIALY------------EDGVTVTADM--DDDG-DWH--------------- 201 (504) T ss_pred EEeCCCCceeEEEEEEEecCC--C-eEEEEEEE------------cCCcEEEEEE--cCCc-eee--------------- Confidence 98763 33444333222211 1 12222222 2333333222 1111 000 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhh-hhHHHHHHHHHHHHHHHHHHHh--ccceeeec---hhh Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLS-QCTNYLFAVDYFFTVYMREGEK--TKTKIAAS---ERM 305 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~-~~~~~i~~lD~~~s~~~~e~~~--g~~ri~v~---~~~ 305 (518) .+ ..+++...|.+.| .|+.....|+|+|.+. .+++++|++|++.++.....+. -..|.+.- +.. T Consensus 202 ~~-----~~~~~~gvPvV~~-----~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~ 271 (504) T protein:vir:99 202 AD-----VRTHKLGVPVEVL-----PYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNF 271 (504) T ss_pred ec-----cccCCCCcceEEe-----cccccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCcccc Confidence 00 0122233344433 3666778899999986 7889999999999998876554 22222221 111 Q ss_pred hccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEec-ccccHHHHHHHHHHHHHHHHHHhCCCccccccCC- Q lcl|Aclame:pro 306 FRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQ-GDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN- 383 (518) Q Consensus 306 l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~- 383 (518) ...++++ ...+.........+....+.........+..| +.-..+.|.+.++.+++.|...+++++..||+.+ T Consensus 272 ~~~d~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~ 346 (504) T protein:vir:99 272 RNKDGSM-----KPAWQIALARVFALPDDEDEPDAARARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNR 346 (504) T ss_pred ccccccc-----cchhhhhhhhhhcCCCccccccccCccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhccccc Confidence 1111111 01111111100011110000000111233333 2334568999999999999999999999999743 Q ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 384 -REVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLN 462 (518) Q Consensus 384 -~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~ 462 (518) +..||.++++....+.+++.+++..++.+|++++++++.+.... .........+.|.|.|..+.+..+.++.++ T Consensus 347 ~n~sSa~Ai~~~~~~L~~ka~~k~~~f~~~l~~~~rla~~~~~~~-----~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~ 421 (504) T protein:vir:99 347 ANPTSADAYIASREDLIAEAEGATDDWSPAFRRSMIRALAIKNGL-----DRIPPEWKTIDSKFRSPLYLSKAAQADAGA 421 (504) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CccccccccceeEecCCCccCHHHHHHHHH Confidence 45689999999999999999999999999999999888775321 222344467899999999999999999999 Q ss_pred HHHhCCC--CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccC-----CCCchhccC--c--CCCCC Q lcl|Aclame:pro 463 NMNSALA--MSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGE-----VPDPEAIGG--M--ETKGG 518 (518) Q Consensus 463 ~~~~aG~--~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~-----~~dp~~~~~--~--~~~gG 518 (518) +++++|. ++..+.+..+. ++++++++++.++.+++++.+. ..++...++ - .+.++ T Consensus 422 Kl~~ag~~l~~~~~~l~~~l-g~~~~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e 487 (504) T protein:vir:99 422 KMLGAGPEWLKETEVGLELL-GLTPQQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQDQGAGE 487 (504) T ss_pred HHHhhccccccchHHHHhhc-CCCHHHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCCCcCCCC Confidence 9999985 34444454443 6888877665555444433110 011110000 0 00000 No 65 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=100.00 E-value=4.1e-33 Score=198.14 Aligned_cols=476 Identities=13% Similarity=0.103 Sum_probs=282.0 Q ss_pred CCcCchHHHHH--HHHhcCCCCh------hh---HHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchH Q lcl|Aclame:pro 1 MGVWSVMTRFI--KGWLNGKPNG------SE---PELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTG 69 (518) Q Consensus 1 ~~~~~~~~~~~--~~w~~g~p~~------~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~ 69 (518) || -|=.||= |.-+.|+-+. .+ +..+..|..+|.++.-.+ .-....+..+....+.+| T Consensus 1 ~~--~~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~----------~~~lrg~~~~~~r~~~~p 68 (527) T protein:vir:10 1 MG--QDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDY----------QVILRGGDEGDQRPIYVP 68 (527) T ss_pred CC--ccccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhhe----------eeecCCccccccceeeeh Confidence 32 1222221 2234443221 11 111222223333332221 111111222122223334 Q ss_pred HHHHHHHHHHHcCCcceEEecccc---ccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECC-----eE Q lcl|Aclame:pro 70 NEIVVVAAEYISGKPLSIDVTGVN---GSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG-----RP 141 (518) Q Consensus 70 ~~i~~~~A~ll~~e~~~i~v~~~~---~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~-----~i 141 (518) . +..|++....|.+.+.+ ...++..++.|..+++.+++..++.+.-..|..+|+++|++.||.+ +| T Consensus 69 s------~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 69 N------GEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred h------hHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 3 37778888888888755 3346778889999999999999999999999999999999999953 59 Q ss_pred EEEEEcCCeeEEEEEc---CcEEEEEEEEEEEe--cCceEEE-EEEEEe--ecccceeeeeeccceEEEEEEEeccCCcc Q lcl|Aclame:pro 142 SISVHSSSQFWIDFKN---NEPFRFNFFEEIPT--SNKADIY-YLVESR--EIKQWDKEGKKLSGGFVTYSVIKIDGDKT 213 (518) Q Consensus 142 ~i~~v~ad~~~P~~~~---g~~~~~~f~~~~~~--~~~~~~y-~~lE~h--e~~~~~~~~~~~~~~~I~n~ly~~~~~~~ 213 (518) ++..++|.+++|..+. +.+..+-++..+.- ..+..++ .++... +...... --.+|+|.|.......++. T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~---~~~~G~~~yt~~~w~lg~w 219 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGK---PVPGGAIKYTEELYEPGKW 219 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccc---cccCcceeeeeceeecccc Confidence 9999999999999664 33455544433221 1111111 111110 0111100 0124556554332222221 Q ss_pred ccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 214 TPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE 293 (518) Q Consensus 214 v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~ 293 (518) . ...+++.....+....+..+....+++...++++++||.. ..++.+|.|++++.++++++||.+.|+..+.++ T Consensus 220 ~--d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p----~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~ 293 (527) T protein:vir:10 220 D--DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHP----IMNAMFGRSGLAGLESLIASVNQTMTDEDLIMV 293 (527) T ss_pred c--cccccccchhhhhhhcCceeeecccCCCCccceEeecCCC----ccccccChhhHhHHHHHHHHHhhhhhHHHHHHH Confidence 1 1122222223333333333334456666666666666553 345678999999999999999999999999999 Q ss_pred hccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 294 KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSG 373 (518) Q Consensus 294 ~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G 373 (518) .+...|++-..+-..+..|.. .. +. ++-.+-..-++ +..+..++-.-.++.|...+..|++.|...++ T Consensus 294 ~sG~Pi~~~tg~~~vd~~G~~--~~--~~------VgPG~iweL~e--~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~ 361 (527) T protein:vir:10 294 FGGLGFYATDSAPPRDSRGNM--VP--WT------ISPLGMVEHGQ--NNKIYRVNGVASLEPSQTHMTKAEEAMQQTKG 361 (527) T ss_pred HhCCceeeecccccccccCCc--Cc--cc------cCCceeEecCC--CcceeeccchhhhHHHHHHHHHHHHHHHHhhc Confidence 988888887666444322221 00 00 00000000111 12233333333567799999999999999999 Q ss_pred CCccccc-cC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccccCCCcCCceeeEEEeCCC Q lcl|Aclame:pro 374 YNPATFN-LG-NREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFL--YLLTGGTNNKEKAIMRDEIRVIIEFPDP 449 (518) Q Consensus 374 ~s~~tf~-~d-~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il--~l~~~~~~~~~~~~~~~~~~v~v~f~D~ 449 (518) ++...|| .| ++..|+.+++-+.+.+++.+.+++..|+..++++.+... ++. .+...... .......++|.|.+. T Consensus 362 ~PavA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~-aye~v~~~-d~~~~~~v~ivf~p~ 439 (527) T protein:vir:10 362 IPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLP-AYEGVGID-DADKKLTVTITFRDP 439 (527) T ss_pred CCeeeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HhhhcccC-CCccccceEEEeccc Confidence 9999998 34 566799999999999999999999999988887655322 222 22111111 223345789999999 Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHhccccCCCCchhccCc----CCCCC Q lcl|Aclame:pro 450 MSVNLNELSSTLNNMNSALAMSVEEKVKLIHP-KWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM----ETKGG 518 (518) Q Consensus 450 i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~-~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~----~~~gG 518 (518) +|.|.++.++.+.+++++|++|.++|+++|-- ++ .+.+++|++||.+|.+.....+-+..+.+ ..+|| T Consensus 440 lP~D~~avie~v~tL~~aGi~S~~tAv~~L~~~~g-~eD~E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g 512 (527) T protein:vir:10 440 KPVNSEKRFNQLLQLWEAGLIPAKKLTEELSKIMG-FELTEEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQG 512 (527) T ss_pred CCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccC Confidence 99999999999999999999999999998710 11 23345667777666554333232222222 34445 No 66 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=100.00 E-value=4.3e-33 Score=198.04 Aligned_cols=476 Identities=12% Similarity=0.103 Sum_probs=282.1 Q ss_pred CCcCchHHHHH--HHHhcCCCCh------hh---HHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchH Q lcl|Aclame:pro 1 MGVWSVMTRFI--KGWLNGKPNG------SE---PELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTG 69 (518) Q Consensus 1 ~~~~~~~~~~~--~~w~~g~p~~------~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~ 69 (518) || -|=.||= |.-+.|+-+. .+ +..+..|..+|.++.-.+ .-....+..+....+.+| T Consensus 1 ~~--~~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~----------~~~lrg~~~~~~r~~~~p 68 (527) T protein:vir:10 1 MG--QDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDY----------QVILRGGDEGDQRPIYVP 68 (527) T ss_pred CC--ccccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhhe----------eeecCCccccccceeeeh Confidence 32 1222221 2334443221 11 111222223333332221 111111222122223334 Q ss_pred HHHHHHHHHHHcCCcceEEecccc---ccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECC-----eE Q lcl|Aclame:pro 70 NEIVVVAAEYISGKPLSIDVTGVN---GSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG-----RP 141 (518) Q Consensus 70 ~~i~~~~A~ll~~e~~~i~v~~~~---~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~-----~i 141 (518) . +..|++....|.+.+.+ ...++..++.|..+++.+++..++.+.-..|..+|+++|++.||.+ +| T Consensus 69 s------~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~ 142 (527) T protein:vir:10 69 N------GEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) T ss_pred h------hHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCc Confidence 3 37778888888888755 3346778889999999999999999999999999999999999953 59 Q ss_pred EEEEEcCCeeEEEEEc---CcEEEEEEEEEEEe--cCceEEE-EEEEEe--ecccceeeeeeccceEEEEEEEeccCCcc Q lcl|Aclame:pro 142 SISVHSSSQFWIDFKN---NEPFRFNFFEEIPT--SNKADIY-YLVESR--EIKQWDKEGKKLSGGFVTYSVIKIDGDKT 213 (518) Q Consensus 142 ~i~~v~ad~~~P~~~~---g~~~~~~f~~~~~~--~~~~~~y-~~lE~h--e~~~~~~~~~~~~~~~I~n~ly~~~~~~~ 213 (518) ++..++|.+++|..+. +.+..+-++..+.- ..+..++ -++... +...... --.+|+|.|.......++. T Consensus 143 ~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~---~~~~G~~~yt~~~w~lg~w 219 (527) T protein:vir:10 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGK---PVPGGAIKYTEELYEPGKW 219 (527) T ss_pred eEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccc---cccCcceeeeeceeecccc Confidence 9999999999999664 33455544433221 1111111 111110 0111100 0124556554332222221 Q ss_pred ccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 214 TPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE 293 (518) Q Consensus 214 v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~ 293 (518) . ...+++.....+....+..+....+++...++++++||.. ..++.+|.|++++.++++++||.+.|+..+.++ T Consensus 220 ~--d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p----~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~ 293 (527) T protein:vir:10 220 D--DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHP----IMNAMFGRSGLAGLESLIASVNQTMTDEDLIMV 293 (527) T ss_pred c--cccccccchhhhhhhcCceeeecccCCCCccceEeecCCC----ccccccChhhHhHHHHHHHHHhhhhhHHHHHHH Confidence 1 1122222223333333333334456666666666666553 345678999999999999999999999999999 Q ss_pred hccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 294 KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSG 373 (518) Q Consensus 294 ~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G 373 (518) .+...|++-..+-..+..|.. .. +.. +-.+-..-++ +..+..++-.-.++.|...++.|++.|...++ T Consensus 294 ~sG~Pi~~~tg~~~vd~~G~~--~~--~~V------gPG~iweL~e--~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~ 361 (527) T protein:vir:10 294 FGGLGFYATDSAPPRDSRGNM--VP--WTI------SPLGMVEHGQ--NNKIYRVNGVASLEPSQTHMNKAEEAMQQTKG 361 (527) T ss_pred HhCCceeeecccccccccCCc--Cc--ccc------CCceeEecCC--CcceeeccchhhhHHHHHHHHHHHHHHHHhhc Confidence 988888887666444322221 00 000 0000000111 12233333333567799999999999999999 Q ss_pred CCccccc-cC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccccCCCcCCceeeEEEeCCC Q lcl|Aclame:pro 374 YNPATFN-LG-NREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFL--YLLTGGTNNKEKAIMRDEIRVIIEFPDP 449 (518) Q Consensus 374 ~s~~tf~-~d-~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il--~l~~~~~~~~~~~~~~~~~~v~v~f~D~ 449 (518) ++...|| .| ++..|+.+++-+.+.+++.+.+++..|+..++++.+... ++. .+...... .......++|.|.+. T Consensus 362 ~PavA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~-aye~v~~~-d~~~~~~v~ivf~p~ 439 (527) T protein:vir:10 362 IPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLP-AYEGVGID-DADKKLTVTITFRDP 439 (527) T ss_pred CCeeeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HhhhcccC-CCccccceEEEeccc Confidence 9999998 34 566799999999999999999999999988887655322 222 22111111 223345789999999 Q ss_pred CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHhccccCCCCchhccCc----CCCCC Q lcl|Aclame:pro 450 MSVNLNELSSTLNNMNSALAMSVEEKVKLIHP-KWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM----ETKGG 518 (518) Q Consensus 450 i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~-~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~----~~~gG 518 (518) +|.|.++.++.+.+++++|++|.++|+++|-- ++ .+.+++|++||.+|.+.....+-+..+.+ ..+|| T Consensus 440 lP~D~~avie~v~tL~~aGiiS~etAv~~L~~~~g-~eD~E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g 512 (527) T protein:vir:10 440 KPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMG-FELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQG 512 (527) T ss_pred CCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccC Confidence 99999999999999999999999999998710 11 23345666777666554333232222222 34445 No 67 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=100.00 E-value=2.4e-32 Score=193.91 Aligned_cols=445 Identities=12% Similarity=0.094 Sum_probs=257.0 Q ss_pred CCcCch------HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHH Q lcl|Aclame:pro 1 MGVWSV------MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVV 74 (518) Q Consensus 1 ~~~~~~------~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~ 74 (518) |.=.-+ +.+-++.|-.- ..++.+..+.|.+... ...++..-++..++.++++|+|+.||+ T Consensus 1 ~~~~~~~d~~~~i~~L~~~~~~~------~~r~~~~~~Yy~g~~~--------i~~~~~~~~~~~~~~~~~~n~~~~ivd 66 (488) T protein:vir:23 1 MAETESIDPEKLRDQLLDAFENK------QNELKSSKAYYDAERR--------PDAIGLAVPLDMRKYLAHVGYPRTYVD 66 (488) T ss_pred CCcccCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHhcccc--------hhhcCcccchhhhhhhhhcchHHHHHH Confidence 222111 22333444321 1122222222222211 112222223334456678999999999 Q ss_pred HHHHHHcCCcceEEecc---ccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE---------CCeEE Q lcl|Aclame:pro 75 VAAEYISGKPLSIDVTG---VNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL---------NGRPS 142 (518) Q Consensus 75 ~~A~ll~~e~~~i~v~~---~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d---------~~~i~ 142 (518) .+|+.|+-....+.... ....+++..++.+++++++|+|.....++...++..|.+++.++.. .+.++ T Consensus 67 ~~a~~l~~~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~~~ 146 (488) T protein:vir:23 67 AIAERQELEGFRIPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEVPL 146 (488) T ss_pred HHHHhhhccceeccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCcce Confidence 99998754432221110 1123455667889999999999999999999999999999887642 35678 Q ss_pred EEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccc Q lcl|Aclame:pro 143 ISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLP 222 (518) Q Consensus 143 i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~ 222 (518) |..++|.+.+|+|++....-..++......+.+.+++ .+.+ .+..|.+ .++.+ +... T Consensus 147 i~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~y------------~~~~~~~-~~~~~-~~~~-------- 203 (488) T protein:vir:23 147 IRVEPPTALYAEVDPRTRKVLYAIRAIYGADGNEIVS-ATLY------------LPDTTMT-WLRAE-GEWE-------- 203 (488) T ss_pred EEEeccceeEEEEecCCCceEEEEEEEEecCCCcEEE-EEEE------------ecCcEEE-EEecC-CceE-------- Confidence 9999999999999753221122222222222222221 2211 1222221 11211 1100 Q ss_pred cccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhcc-ceee Q lcl|Aclame:pro 223 EQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEKTK-TKIA 300 (518) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~g~-~ri~ 300 (518) . ....+++...++++.+ .|+.....|+|+|++.. .++++|++|.+.|++....+... +..+ T Consensus 204 ----------~---~~~~~h~~g~vPvv~f----~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~ 266 (488) T protein:vir:23 204 ----------A---PTSTPHGLEMVPVIPI----SNRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRL 266 (488) T ss_pred ----------e---ccccccCCCCcceEEe----ccccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH Confidence 0 0012344443333322 35566778999999985 68999999999999999877533 2222 Q ss_pred echhhhccCCCCCccccccCCCcchhheeeecCCcCCC-CCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 301 ASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAG-AKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF 379 (518) Q Consensus 301 v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf 379 (518) | ..+-........... .+.+....+..... ++....+..++ ....+.|.+.++.+++.+...+++++..| T Consensus 267 i-~G~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~g~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~~~~p~~~~ 337 (488) T protein:vir:23 267 I-FGAKPEELGINAETG-------QRMFDAYMARILAFEGGEGAHAEQFS-AAELRNFVDALDALDRKAASYSGLPPQYL 337 (488) T ss_pred H-hCCCccccccccccc-------chhhhhhhhhhccCCCCCCceeEecC-CCChHHHHHHHHHHHHHHhcccCCCHHHh Confidence 2 111000000000000 11111111111111 11222333332 44678999999999999999999999999 Q ss_pred ccCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 380 NLGNRE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELS 458 (518) Q Consensus 380 ~~d~~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~ 458 (518) +....+ .||.+++...+.+...+.+++..++.+|+++++.++.+... .........+.|.|.+..+.+..+.+ T Consensus 338 g~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~------~~~~~~~~~i~v~f~~~~~~s~~~~a 411 (488) T protein:vir:23 338 SSSSDNPASAEAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYKMVKG------GDIPTEYYRMETVWRDPSTPTYAAKA 411 (488) T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCcchhhccceEEecCCCCCCHHHHH Confidence 875433 58999999999999999999999999999999998766421 11123345789999999999999999 Q ss_pred HHHHHHHhCC--CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccc---c-------CCCCchhccCcCCCCC Q lcl|Aclame:pro 459 STLNNMNSAL--AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAI---G-------EVPDPEAIGGMETKGG 518 (518) Q Consensus 459 ~~~~~~~~aG--~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~---~-------~~~dp~~~~~~~~~gG 518 (518) +.+.+++++| ++|.++.+.++ | +++++. +|++++++++.. . ..+++. ..+....|+ T Consensus 412 da~~kl~~~g~~~~s~et~~~~l-~-~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 479 (488) T protein:vir:23 412 DAAAKLFANGAGLIPRERGWVDM-G-YTIVER-EQMRQWLEQDQKQGLGLIGSLYGASTPEG-KPGEAPVGE 479 (488) T ss_pred HHHHHHHhcccccCCHHHHHHhC-C-CCchHH-HHHHHHHHHHHHHHHHHHHHHhccCCCcc-cCCCCCCCC Confidence 9999999877 79999988764 4 555443 344454333211 0 111111 111222333 No 68 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=100.00 E-value=1.2e-30 Score=184.62 Aligned_cols=480 Identities=13% Similarity=0.127 Sum_probs=266.6 Q ss_pred CCc----CchHHHHH----HHHhcCCCChhhHHhhHH---HHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchH Q lcl|Aclame:pro 1 MGV----WSVMTRFI----KGWLNGKPNGSEPELIPK---YLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTG 69 (518) Q Consensus 1 ~~~----~~~~~~~~----~~w~~g~p~~~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~ 69 (518) ||- +|+=.+|. .-| -|+ -+-.++.. |..+|.+++++. +.--++..++.+..|-+ T Consensus 1 m~~~~~q~~p~~~~fp~~~a~w---V~~-~D~~RlaaY~ly~d~y~n~~~el-----------~~il~G~dr~~~~~ps~ 65 (563) T protein:vir:74 1 MPYNHKQYDPAKPFLRGGDDNI---VDE-NDKNRVRAYDLYENIYLNSAETL-----------KLVLRGDDSVPILMPSG 65 (563) T ss_pred CCccccccCCCccccccccccc---CCH-HHHHHHHHHHHHHHhhcCchhhh-----------hhhcCCCceeeeccchH Confidence 331 11111111 112 111 11122222 233333333321 11123344444444456 Q ss_pred HHHHHHHHHHHcCCcceEEeccccc--cchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC-----CeEE Q lcl|Aclame:pro 70 NEIVVVAAEYISGKPLSIDVTGVNG--SKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN-----GRPS 142 (518) Q Consensus 70 ~~i~~~~A~ll~~e~~~i~v~~~~~--~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~-----~~i~ 142 (518) ++++++.+++| +.+..|+|+..++ ...+.+|++|..+++.+++..++......|..+|+++||+.||. ++++ T Consensus 66 r~~V~~~~~~L-g~~~~~~Ve~~~~de~~~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g~R~r 144 (563) T protein:vir:74 66 RKIVEAVHRFL-GVGFDYLVEPDMGDEGIRQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNKKAGERIS 144 (563) T ss_pred HHHHHHHHHhc-CCCcEEecCccccCcchHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccccccCCCce Confidence 69999988666 9999999987653 33456788899999999999999999999999999999999984 4789 Q ss_pred EEEEcCCeeEEEEEcCcEEEEEEEEEE-----EecCceEEEEEEEE-eecccceeeeeeccceEEEEEEEeccCC---cc Q lcl|Aclame:pro 143 ISVHSSSQFWIDFKNNEPFRFNFFEEI-----PTSNKADIYYLVES-REIKQWDKEGKKLSGGFVTYSVIKIDGD---KT 213 (518) Q Consensus 143 i~~v~ad~~~P~~~~g~~~~~~f~~~~-----~~~~~~~~y~~lE~-he~~~~~~~~~~~~~~~I~n~ly~~~~~---~~ 213 (518) +.-++|.+++|....+...++-.++-. +...++.++++--| .++.. +.-..+.|.+.+-....+ .. T Consensus 145 v~~vDP~~~fp~~dpd~v~g~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lnd-----eg~~~~~~~~dae~w~lg~wd~r 219 (563) T protein:vir:74 145 VDEVDPRQIFLIEDGSTVVGFHMVDIVQDFRSPDDPSKKLARRRTFRRVRND-----EGMFTGRISSELTHWTLGNWDDR 219 (563) T ss_pred EeecCCceeeeccCCCCcccceeeecccCCCCCcchhccceeeeeeeeeeCC-----CCCccceeeeccchhcccccccc Confidence 999999999994333333222111110 11111112221100 01110 001112222222111111 00 Q ss_pred ccccccccccccccc-cccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 214 TPISAERLPEQITSY-LHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREG 292 (518) Q Consensus 214 v~~~~~~~~~~~~~~-~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~ 292 (518) .... .........+ ..-.+. ++..+++....+.++++||.+ ..+|.+|.|.+++.+++|++||.+.|...+.+ T Consensus 220 ~~~~-~~~~~~~~~~~~~~~d~-e~~~LP~pi~~iPiv~~~tip----~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~ 293 (563) T protein:vir:74 220 GAIS-DEQARRKEQVRSAQHDE-EEEELPEPISQLPLYRWRNKP----PQNSSWGTSQLEGMETLAYALNQSLTDEDATI 293 (563) T ss_pred Cccc-hhhhcccchhhhhhhhc-hhhhccccccCccEEEcCCCC----CcccccchhhHHHHHHHHHHHhhhhhHHHHHH Confidence 0000 0000000000 000111 122234444445555545443 34677899999999999999999999999999 Q ss_pred HhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHH-HHHHH Q lcl|Aclame:pro 293 EKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQ-KAVSK 371 (518) Q Consensus 293 ~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~-~i~~~ 371 (518) ..+..-|+|-.+..+.++..+ ...+|.--+..-...+ +......+..++-.-.+..+...++.+.. -+... T Consensus 294 ~~tG~pi~vl~~~~p~d~~~g-~~~~w~vgpG~i~El~-------~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~ 365 (563) T protein:vir:74 294 VFQGLGMYVTNASAPVDPNTG-ELTDWNIGPMQIVEIA-------GNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEG 365 (563) T ss_pred HhcCCCeEEeccccccccccc-cccccccCCceeEecc-------CCccccceeeecchhhhHHHHHHHHHHHHHHHHhh Confidence 999999999888766654321 1111211111111000 01111234445444445555566666665 45667 Q ss_pred hCCCccccc--cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcccc----CCCc--CCc Q lcl|Aclame:pro 372 SGYNPATFN--LGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQ----MLWDFLYLLTGGTNNKE----KAIM--RDE 439 (518) Q Consensus 372 ~G~s~~tf~--~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~----li~~il~l~~~~~~~~~----~~~~--~~~ 439 (518) .+++...|| ..+...|+.+..-+.+.+.+.+++|+..|...+++ .+...|......+.... .++. ... T Consensus 366 s~tPavA~G~vD~~~~~SGiALeL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~ 445 (563) T protein:vir:74 366 SGTPEVAIGRVDVTSAESGISLELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNE 445 (563) T ss_pred ccCcceeecccccccccchhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCc Confidence 799999998 34566788888889999999999999877776666 56555544444322221 1111 222 Q ss_pred eeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHc-CCCCHHHHHHHHH-----HHHH---hccccCCCCchhc Q lcl|Aclame:pro 440 IRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH-PKWEDEEIQAEVK-----RIYL---ENAIGEVPDPEAI 510 (518) Q Consensus 440 ~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~-~~~~eeea~eev~-----rI~~---E~~~~~~~dp~~~ 510 (518) ..|+|.|++.+|+|.++..+..+.++++|++|.++|+++|- -+|...+|+.|.+ +|.. .|+.+ .+|... T Consensus 446 ~~v~ivf~p~~P~d~~~vv~~~~tl~~aGiiSretAv~~L~~~g~~~pdae~e~~~ie~~~i~~~~~a~a~a--d~~~~~ 523 (563) T protein:vir:74 446 CSVVCIFADPMPVNKTQVTQDTLLLQQAHLILRKMAVAKLRSIGWEYPEVDDQGNALTDDDIADMLLAEAEA--DASLGL 523 (563) T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHcCchhHHHHHHHHHhCCCCCCcHHHHHhhcCHHHHHHHHHHHhhc--cCcccc Confidence 34789999999999999999999999999999999998881 1233333333333 3433 23322 244322 Q ss_pred cCcCCCCC Q lcl|Aclame:pro 511 GGMETKGG 518 (518) Q Consensus 511 ~~~~~~gG 518 (518) - ..++|| T Consensus 524 ~-a~~~~g 530 (563) T protein:vir:74 524 S-AMDNGG 530 (563) T ss_pred e-ecccCC Confidence 1 134444 No 69 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=99.96 E-value=6.1e-29 Score=175.26 Aligned_cols=444 Identities=8% Similarity=-0.060 Sum_probs=253.0 Q ss_pred CCcCchH----HHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVM----TRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVA 76 (518) Q Consensus 1 ~~~~~~~----~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~ 76 (518) =|+.-.- .+-++.|-+-.| .+..+.+ +|.+.+ .....+...++..+..+..+|+|+.|++.+ T Consensus 10 ~gl~~~~~~~~~~L~~~~~~~~~---~~~~~~~---Yy~G~~--------~~~~~~~~~p~~~r~~~~v~nw~~~~Vd~~ 75 (474) T protein:vir:81 10 PSLSNDENALINGLLAQIENLRW---KNLLRTS---YYENKR--------TIQYVGTLIPPQYFNLGLVLGWTGKAVDAL 75 (474) T ss_pred CCCChhHHHHHHHHHHHHHHHhh---HHHHHHH---HhccCC--------ChhhccccccHHHHHHHhhcChHHHHHHHH Confidence 2332222 222233322111 1111111 121221 111222222333333346899999999999 Q ss_pred HHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-C--CeEEEEEEcCCeeEE Q lcl|Aclame:pro 77 AEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-N--GRPSISVHSSSQFWI 153 (518) Q Consensus 77 A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~--~~i~i~~v~ad~~~P 153 (518) |+.+.-+ .|.+++.+ .....++++++.|+|.....+++..|+..|.+++.++.. + +.+.|..++|.+.+. T Consensus 76 a~rl~~~--Gf~~~d~~-----~~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~ 148 (474) T protein:vir:81 76 ARRCNLE--GFVWPDGD-----LDSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATG 148 (474) T ss_pred Hhhhccc--ceECCCCC-----ccchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEE Confidence 9987654 35543221 123457888999999999999999999999999888764 2 358899999999999 Q ss_pred EEEcCc--EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNNE--PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 154 ~~~~g~--~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) +|++.. +............++....+ .+.++.+. .+++.+ +.... .. T Consensus 149 ~~D~~~~~~~~al~~~~~~~~g~~~~~~---------------ly~~~~~~-~~~~~~-~~~~w--------------~~ 197 (474) T protein:vir:81 149 EWNRRRRGLNNLLSIIDKDKEGKVLSLA---------------LYLDNETV-TAQRDK-ATLKW--------------QV 197 (474) T ss_pred EEeCCCCcceeeeEEEEEcCCCcEEEEE---------------EEeCCcEE-EEEEcC-cccee--------------ee Confidence 997643 33322221111111111111 11122222 122211 11110 00 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHH--hccceeeechhhhc- Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDL-SQCTNYLFAVDYFFTVYMREGE--KTKTKIAASERMFR- 307 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~-~~~~~~i~~lD~~~s~~~~e~~--~g~~ri~v~~~~l~- 307 (518) + ..+++...|.+.| .|+.+...|+|+|.+ ..+++++|++|++.++.....+ .-..|.+.--+.-. T Consensus 198 -~-----~~~~~~gvPvV~~-----~n~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~ 266 (474) T protein:vir:81 198 -D-----RDEHVYGVPAQVL-----PYKPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESAL 266 (474) T ss_pred -c-----cCCCCCCcceEEe-----cccccccCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhc Confidence 0 1123333344433 455667889999988 4889999999999999877544 44444443211100 Q ss_pred cCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEec-ccccHHHHHHHHHHHHHHHHHHhCCCccccccC--Cc Q lcl|Aclame:pro 308 KKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQ-GDFRDGSYRETMEYFAQKAVSKSGYNPATFNLG--NR 384 (518) Q Consensus 308 ~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d--~~ 384 (518) .+.++. ....|..-......+..+.++........++.| +.-..+.|.+.++.+++.+...+|+++..||+. .+ T Consensus 267 ~d~d~~---~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~n 343 (474) T protein:vir:81 267 KNADGT---IKSVWEARLGRIKGLPDDADADIPQLARADVKQFPAASPDAHWSDINGLAKLFAREASLPDTAVAISGLSN 343 (474) T ss_pred cccccc---ccchhhhhHHHHhcCCCcccccccccccccccccCCCChhHHHHHHHHHHHHHHhhhCCCHHHhccccccc Confidence 011111 011111110011111111111111111122333 234467799999999999999999999999974 34 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 385 EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNM 464 (518) Q Consensus 385 ~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~ 464 (518) ..||.++.+....+..++.+++..+..+|+++++.++.+..... ........+.+.+.|.|...++..+.++.++|+ T Consensus 344 p~SaeAi~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~~~---~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl 420 (474) T protein:vir:81 344 PTSAESYDASQYELIAEAEGAVDDFTPALRKAFIRALAMKNKVA---IDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQ 420 (474) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---ccccchhhccceeEecCCCccCHHHHHHHHHHH Confidence 46899999999999999999999999999999999887753211 111223346789999999999999999999999 Q ss_pred HhCCC--CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 465 NSALA--MSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 465 ~~aG~--~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++|. .+.+...+ .+++++++++++.+..+.+++.... ..... -...+| T Consensus 421 ~~a~~~~~~~~~~~~--~lg~t~~~i~~~~~~~~~~~~~~~~--~~l~~-~~~~~~ 471 (474) T protein:vir:81 421 LAAVPWLAETEVGLE--LIGLTPQQARRAMADKRRVQGRGTL--QALID-RSNNGA 471 (474) T ss_pred HhcccCCCcHHHHHh--hcCCCHHHHHHHHHHHHHHhHHHHH--HHHHh-cCCCCC Confidence 99984 34444333 4689998877666555555443211 11111 122333 No 70 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=99.95 E-value=1.9e-27 Score=167.09 Aligned_cols=396 Identities=10% Similarity=-0.043 Sum_probs=240.2 Q ss_pred hcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC-ccccceecCchHHHHHHHHHHHHcCCcceEEecccc Q lcl|Aclame:pro 15 LNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP-TVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVN 93 (518) Q Consensus 15 ~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~ 93 (518) +. ....+.....++|.+.++- .+. +..-++ ...+.++.+|+|+.|++.+|+.+.=+- |+. T Consensus 1 l~-----~~~~r~~~~~~yY~g~~~~----~~~----~~~~p~~~~~~~~~v~nw~~~~Vds~a~rl~~~G--f~~---- 61 (410) T protein:vir:95 1 MN-----LYQSRVNLRYKHYAMQHYE----APT----GITIPAHIRAKYQAVLGWAAKGVDSLADRLIFRA--FAN---- 61 (410) T ss_pred CC-----cchhhHHHHHHHhcCCCCc----ccc----chhccHHHHhHHHhhcchhHHHHHHhHhhhcccc--ccC---- Confidence 10 0011111111222222111 000 101111 112335678999999999999764332 321 Q ss_pred ccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEc--CcEEEEEEEEEEE Q lcl|Aclame:pro 94 GSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN--NEPFRFNFFEEIP 170 (518) Q Consensus 94 ~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~--g~~~~~~f~~~~~ 170 (518) . |. .++++++.|+|.....+++..|+..|.+++.++-+ ++++.|.+++|.+.+.+|++ +++...+.+ .. T Consensus 62 -~-d~----~l~~i~~~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~~i~~~sP~~~~~i~Dp~~~~~~~al~~--~~ 133 (410) T protein:vir:95 62 -D-DF----NVTEIFDRNNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPITGLLVEGYAV--LA 133 (410) T ss_pred -C-Cc----hHHHHHhhcChHHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEEeCCCCceEEEEEE--EE Confidence 2 22 36778889999999999999999999988888754 57899999999999999976 333333322 11 Q ss_pred ecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEE Q lcl|Aclame:pro 171 TSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAY 250 (518) Q Consensus 171 ~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~ 250 (518) ..+.+. .+...+ +.++.+.+ |+.+++ . | .++++.+.++++ T Consensus 134 ~~~~~~-~~~~~~------------~~~~~~~~--~~~~~~--~----------------~-------~~~~~~g~vPvV 173 (410) T protein:vir:95 134 RDDYNR-PTLEAY------------FEPNATHF--IPKDGE--P----------------Y-------SVTNETGIPLLV 173 (410) T ss_pred ecCCCe-EEEEEE------------EeCCcEEE--EeeCCc--c----------------c-------cccCCCCCcceE Confidence 211111 111111 01111111 111110 0 0 124555554444 Q ss_pred EecCcccCccccCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHH--hccceeeechhhhccCCCCCccccccCCCcchhh Q lcl|Aclame:pro 251 LINNSPSNTRYPHLNLGESDL-SQCTNYLFAVDYFFTVYMREGE--KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDY 327 (518) Q Consensus 251 ~~~n~~~N~~~~~sPlG~S~~-~~~~~~i~~lD~~~s~~~~e~~--~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~ 327 (518) .+ .|+.+...|+|+|.+ ...+.++|++|++.++.....+ .-..|.+.. + +.++++ ...+...... T Consensus 174 ~f----~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G--~-d~d~~~-----~~~~~~~~~~ 241 (410) T protein:vir:95 174 PV----IHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILG--L-DPDAEP-----MEKWKATVSS 241 (410) T ss_pred Ee----cccccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeec--c-CCCCCc-----Cchhhhhhhh Confidence 33 355677889999977 5799999999999999887554 333443332 1 111111 1112211111 Q ss_pred eeeecCCcCCCCCCCccceEec-ccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 328 FMQFKGTLDAGAKLNDMIQFMQ-GDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWSLQDATVRKIEKK 405 (518) Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~-~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t~~t~~~~ 405 (518) +....+..++ ..+++.| +.-..+.|.+.+..+++.+...+++++..||+...+ .+|.++.+....+..++.++ T Consensus 242 ---i~~~~~~~~~--~~~~v~q~~~~~l~~~~~~l~~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~a~~~~L~~ka~~k 316 (410) T protein:vir:95 242 ---LLTISSSDKG--VKPSVGQFTTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKA 316 (410) T ss_pred ---heeccCCCCC--CcceEEecCCCChHHHHHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHH Confidence 1111111111 2333333 233456899999999999999999999999986554 68999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeC---CCCCCCHHHHHHHHHHHHhC--CCCCHHHHHHHHc Q lcl|Aclame:pro 406 KRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFP---DPMSVNLNELSSTLNNMNSA--LAMSVEEKVKLIH 480 (518) Q Consensus 406 ~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~---D~i~~d~~~~~~~~~~~~~a--G~~S~~~~v~~~~ 480 (518) +..+..+|++++++++.+... ........+.+.|.|. |.-..+..+.++.++|++++ |+++.++.+..+ T Consensus 317 ~~~fg~~l~~~~rla~~i~~~-----~~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~l- 390 (410) T protein:vir:95 317 QRSLGAGLLNVAYVAACLRDE-----FRYTRSQFVRTAVKWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLT- 390 (410) T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCCcccccceeeEEeeecCCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhc- Confidence 999999999999998877532 1222344567899998 77778889999999999999 789999988776 Q ss_pred CCCCHHHHHHHHHHHHHhccccCCC Q lcl|Aclame:pro 481 PKWEDEEIQAEVKRIYLENAIGEVP 505 (518) Q Consensus 481 ~~~~eeea~eev~rI~~E~~~~~~~ 505 (518) ++++++..+ +..+|+.+ ..+ T Consensus 391 -g~~~~~~~~---~~~~e~~~-~g~ 410 (410) T protein:vir:95 391 -GIAGDMSAK---PVVSEGGS-NGE 410 (410) T ss_pred -CCChHHHHH---HHHHHHHh-CCC Confidence 577654321 22233321 111 No 71 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=99.94 E-value=8.6e-26 Score=158.01 Aligned_cols=407 Identities=11% Similarity=-0.021 Sum_probs=243.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc-ccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-HDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~l~~~i~~~~A~l 79 (518) |=. +-|.+-++.|-+-.| +..+..++|.+.++. .+. +...++.. ...++.+|+|+.|++.+|+. T Consensus 1 m~~-~~i~~L~~~~~~~~~------r~~~~~~yy~g~~~~----~~~----~~~~p~~~~~~~~~v~nw~~~~Vd~~a~r 65 (422) T protein:vir:97 1 MNY-MGMGYLRRKLALFKT------GVDKRYRYYAMDDRD----DTR----SIVMPNNVREMYRSVLEWTAKGVDSLADR 65 (422) T ss_pred CCh-HHHHHHHHHHHHHHH------HHHHHHHHHhcCCCh----hhc----CccccHHHHHHHHhhcchhHHHHHHHHhc Confidence 110 012233344432111 111222222232211 010 11111111 22344579999999999997 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE--CCeEEEEEEcCCeeEEEEEc Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL--NGRPSISVHSSSQFWIDFKN 157 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d--~~~i~i~~v~ad~~~P~~~~ 157 (518) ++=+ .|++ +|. .++++++.|+|.....+++..|+..|.+++.++-+ ++.+.|.+++|.+.+.+|++ T Consensus 66 l~~~--Gf~~------~d~----~l~~~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i~D~ 133 (422) T protein:vir:97 66 IIFR--EFTN------DDF----NAWEIFKANNPDIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGILDP 133 (422) T ss_pred cccc--eeeC------Cch----hHHHHHHhcChHHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEEEeC Confidence 6433 2433 122 36778889999999999999999999999999865 47789999999999999976 Q ss_pred Cc--EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 158 NE--PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 158 g~--~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) .. +..+..+ ......+.... ..+ +. ...+. .|+.++. + T Consensus 134 ~~~~~~~a~~~--~~~~~~~~~~~-~~~--~~----------~~~~~--~~~~~~~-------------------~---- 173 (422) T protein:vir:97 134 TTFLLTEGYAI--LESDSNGNPTL-EAY--FT----------DKDIW--YYPKKGK-------------------P---- 173 (422) T ss_pred CCCcceeeEEE--EEecCCCcEEE-EEE--Ec----------CceEE--EEcCCCc-------------------c---- Confidence 32 3222221 11111111110 000 00 11111 1222110 0 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHHh--ccceeeechhhhccCCCC Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDL-SQCTNYLFAVDYFFTVYMREGEK--TKTKIAASERMFRKKVNK 312 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~-~~~~~~i~~lD~~~s~~~~e~~~--g~~ri~v~~~~l~~~~~~ 312 (518) ..++++.+.++++-+ .|+.....|+|+|.+ ...++++|++|++.++.....+. -..|.+.. + +.++ T Consensus 174 --~~~~~~~g~vPvv~~----~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G--~---d~d~ 242 (422) T protein:vir:97 174 --YNIKNPTGHPLLVPI----IHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSFPQKYVLG--M---DPDA 242 (422) T ss_pred --ccccCCCCCcceEEe----cccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcc--c---Cccc Confidence 012345554444332 355577889999998 57999999999999998876654 33333321 1 1111 Q ss_pred CccccccCCCcchhheeeecCCcCCCCCCCccceEecc-cccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHH Q lcl|Aclame:pro 313 STDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQG-DFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATE 390 (518) Q Consensus 313 ~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtE 390 (518) .. ...+.........+.. + ++ ...+++-|+ .--.+.|.+.+..+++.+...+++++..||..+.+ .||.+ T Consensus 243 ~~---~~~~~~~~~~i~~~~~--d--e~-~~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~A 314 (422) T protein:vir:97 243 KP---MEKWRATVSTLLEISK--D--ED-GDKPTVGQFTTASMAPFMEHLKMYASLFAGGSGLTLDDLGFPSDNPSSVES 314 (422) T ss_pred cc---CchhhhhhhhhhccCC--C--CC-CCcceeeecCCCChhHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHH Confidence 11 1111111111111111 1 11 122333332 23346799999999999999999999999987655 68999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCC---HHHHHHHHHHHHhC Q lcl|Aclame:pro 391 IWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVN---LNELSSTLNNMNSA 467 (518) Q Consensus 391 i~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d---~~~~~~~~~~~~~a 467 (518) |++....+.+++.+++..+..+|+++++.++.+.... ......-.++.+.|....+.| ..+.++.++|++++ T Consensus 315 i~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~-----~~~~~~~~~~~~~w~p~~~~~~~s~a~~aDa~~Kl~~a 389 (422) T protein:vir:97 315 IKAAHENLRAAGRKAQRSFSSGFLNVAYIAVCLRDEF-----PYLRNQFMDTVIKWEPLFEADANMLTLVGDGAIKLNQA 389 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----cccchhhccceEEEccCCCCChHHHHHHHHHHHHHHhh Confidence 9999999999999999999999999999988775321 122233356899999555555 56778889999999 Q ss_pred --CCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 468 --LAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIG 502 (518) Q Consensus 468 --G~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~ 502 (518) |+++.++.++++ ++++ .+.|+.|+.++++.+ T Consensus 390 ~~~~~~~~~~~~~l--g~~~--~~~~~~~~~~~~~d~ 422 (422) T protein:vir:97 390 IPGFMDADVIRDLT--GVKG--ADKPIPAITEVTTDG 422 (422) T ss_pred ccccccHHHHHHHc--CCCc--hhHHHHHHHhhhccC Confidence 689999988877 4654 446677887776544 No 72 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=99.93 E-value=1.1e-25 Score=157.51 Aligned_cols=395 Identities=9% Similarity=-0.065 Sum_probs=234.9 Q ss_pred cCch-HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc-ccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 3 VWSV-MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-HDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 3 ~~~~-~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~l~~~i~~~~A~ll 80 (518) +... |..-++.|.+-.| +..+..++|.+.++- .+. +...++.. .+.++.+|+|+.|++.+|+.+ T Consensus 1 ~~~~~i~~L~~~~~~~~~------r~~~~~~yY~g~~~~----~~~----~~~~p~~~~~~~~~v~nw~~~iVds~a~rl 66 (409) T protein:vir:94 1 MTEKGIGYLRFKLSVHKR------RAEMRYDQYAMKYVD----RFK----GITIPQALSQQYRSILGWCAKGVDSLADRL 66 (409) T ss_pred CCHHHHHHHHHHHHHHhH------HHHHHHHHhcccCch----hhc----ChhhhHHHHHHHhhhcchhHHHHHHhHhhc Confidence 1111 1122244432211 111222223333211 010 11112211 233567899999999999976 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEc-- Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN-- 157 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~-- 157 (518) .=+ .|+. +|+ .++++++.|+|.....+++..|+..|.+++.++-+ +|+++|.+++|.+.+.+|++ T Consensus 67 ~~~--Gf~~------~d~----~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~~sp~~~~~i~D~~~ 134 (409) T protein:vir:94 67 VFR--EFEN------DDF----TVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVIEAVNATGIIDPIT 134 (409) T ss_pred ccC--cccC------Cch----HHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEEeccceEEEEEecCC Confidence 433 2321 233 36788889999999999999999999998888764 67899999999999999876 Q ss_pred CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccc Q lcl|Aclame:pro 158 NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLN 237 (518) Q Consensus 158 g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (518) +++...+... ...... ..+....+ .++.+ +.+++.++. | T Consensus 135 ~~~~~a~~~~--~~d~~~-~~~~~~~~------------~~~~~-~~~~~~~~~-------------------~------ 173 (409) T protein:vir:94 135 GLLTEGYAVL--ERDENN-NVVLEAHF------------LPDRT-DYYYRDSRN-------------------N------ 173 (409) T ss_pred CceeeeEEEE--EecCCC-ceEEEEEE------------ecCcE-EEEEecCce-------------------e------ Confidence 3333322221 111111 11111111 11111 112221110 0 Q ss_pred ceeecCCCcceEEEecCcccCccccCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHHh--ccceeeechhhhccCCCCCc Q lcl|Aclame:pro 238 HSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDL-SQCTNYLFAVDYFFTVYMREGEK--TKTKIAASERMFRKKVNKST 314 (518) Q Consensus 238 ~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~-~~~~~~i~~lD~~~s~~~~e~~~--g~~ri~v~~~~l~~~~~~~~ 314 (518) ..++++.+.++++-+ .|+.+...|+|+|.+ ...+.++|++|++.++.....+. -..|.+.. + + .++. T Consensus 174 ~~~~n~~g~vPvV~f----~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G--~-d--~d~~- 243 (409) T protein:vir:94 174 ISIANPTGHPLLVPI----IHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTG--L-S--DDAE- 243 (409) T ss_pred EeeeCCCCCcceEEe----ccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEe--c-C--CCCc- Confidence 012344444444332 356677889999998 57999999999999998876554 33343332 1 1 1111 Q ss_pred cccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWS 393 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s 393 (518) ....+.........+.. ++ ++.+..+.++ +.-..+.|.+.++.+++.+...+++++..||....+ .||.++++ T Consensus 244 --~~~~~~~~~~~i~~~~~--d~-dg~~~~v~q~-~~~~l~~~~~~l~~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a 317 (409) T protein:vir:94 244 --PMETWKATVSSMLQFTK--DE-DGDKPTLGQF-TQPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKA 317 (409) T ss_pred --ccchhhhhHHHhhcCCC--CC-CCCCceEEec-CCCChhHHHHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHH Confidence 11112221111111111 11 1122233323 233356899999999999999999999999986544 68999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCC---HHHHHHHHHHHHhCC-- Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVN---LNELSSTLNNMNSAL-- 468 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d---~~~~~~~~~~~~~aG-- 468 (518) ....+..++.+++..+..+|++++++++.+.... ......-..+.+.|.+..+.+ ..+.++.++|++++| T Consensus 318 ~~~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~~-----~~~~~~~~~~~v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~ 392 (409) T protein:vir:94 318 SHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDA-----PYLREQFRKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPE 392 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CccccccccceEEeccCCCcchHHHHHHHHHHHHHHHhccc Confidence 9999999999999999999999999888775321 112233357899999655555 467788899999999 Q ss_pred CCCHHHHHHHHcCCCCHHH Q lcl|Aclame:pro 469 AMSVEEKVKLIHPKWEDEE 487 (518) Q Consensus 469 ~~S~~~~v~~~~~~~~eee 487 (518) +++.+..+.++ ++++.+ T Consensus 393 ~~~~~~~~~~l--G~~~~d 409 (409) T protein:vir:94 393 FINKDTIRDLT--GIEGGE 409 (409) T ss_pred ccchhHHHHHc--CCCCCC Confidence 56778777665 566544 No 73 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=99.92 E-value=6.9e-25 Score=153.04 Aligned_cols=395 Identities=9% Similarity=-0.056 Sum_probs=233.1 Q ss_pred cCch-HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC-ccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 3 VWSV-MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP-TVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 3 ~~~~-~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~l~~~i~~~~A~ll 80 (518) .... |..-++.|.+-.| +..+..+.|.+.++. .+ -+...++ ...+.++.+|+|+.|++.+|+.+ T Consensus 1 ~~~~~i~~L~~~~~~~~~------r~~~~~~yY~g~~~~----~~----~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl 66 (409) T protein:vir:16 1 MTEKGIGYLRFKLSVHKR------RAEMRYEQYAMKHVD----RF----KGITIPQALSQQYRSILGWCAKGVDSLADRL 66 (409) T ss_pred CCHHHHHHHHHHHHHHhH------HHHHHHHHHhccCch----hh----cchhhhHHHHHHHhhhcChhHHHHHHhHhhc Confidence 1111 1122244432211 111112222222211 00 0111122 11234567899999999999976 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeEEEEEEcCCeeEEEEEc-- Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN-- 157 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i~i~~v~ad~~~P~~~~-- 157 (518) .=+ .|+ . +|+ .++++++.|+|.....+++..|+..|.+++.++-+ ++++.|.+++|.+.+.+|++ T Consensus 67 ~~~--Gf~-----~-~d~----~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~sP~~~~~i~D~~~ 134 (409) T protein:vir:16 67 VFR--EFE-----N-DDF----TVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVIEATNATGIIDPIT 134 (409) T ss_pred ccc--ccc-----C-cch----HHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEeeccc Confidence 333 232 1 232 36788889999999999999999999988888754 57899999999999999876 Q ss_pred CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccc Q lcl|Aclame:pro 158 NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLN 237 (518) Q Consensus 158 g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (518) ++++..+.+......+....+++ +.++.+ ...++..+. | T Consensus 135 ~~~~~a~~~~~~d~~~~~~~~~~---------------~~~~~~-~~~~~~~~~-------------------~------ 173 (409) T protein:vir:16 135 GLLTEGYAVLERDENNNVVLEAH---------------FLPDRT-DYYYRDSRN-------------------N------ 173 (409) T ss_pred ccceeeeEEEEecCCCceEEEEE---------------EecCcE-EEEEecCcc-------------------c------ Confidence 33333222111111111111110 001111 111221110 0 Q ss_pred ceeecCCCcceEEEecCcccCccccCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHHh--ccceeeechhhhccCCCCCc Q lcl|Aclame:pro 238 HSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDL-SQCTNYLFAVDYFFTVYMREGEK--TKTKIAASERMFRKKVNKST 314 (518) Q Consensus 238 ~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~-~~~~~~i~~lD~~~s~~~~e~~~--g~~ri~v~~~~l~~~~~~~~ 314 (518) ...+++.+.++++-+ .|+.+...|+|+|.+ ...++++|++|++.++.....+. -..|.+.. + +.++. T Consensus 174 ~~~~~~~g~vPvV~f----~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G--~---d~d~~- 243 (409) T protein:vir:16 174 ISIANPTGNPLLVPI----IHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTG--L---SDDAE- 243 (409) T ss_pred cceecCCCCcceEEe----cccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEe--c---CCCCC- Confidence 012345544444332 366677899999988 57999999999999998875543 33443332 1 11111 Q ss_pred cccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWS 393 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s 393 (518) ....|.........+.. ++ ++....+.+++ .-..+.|.+.+..+++.+...+++++..||+...+ .||.++.+ T Consensus 244 --~~~~~~~~~~~i~~~~~--d~-~g~~~~v~q~~-~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a 317 (409) T protein:vir:16 244 --PMETWKATVSSMLQFTK--DE-DGDKPTLGQFT-QPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKA 317 (409) T ss_pred --ccchhhhhhhHhhccCC--CC-CCCCceEEecC-CCChhHHHHHHHHHHHHHhhhcCCCHHHcccccCchhHHHHHHH Confidence 11112211111111111 11 12223343332 33356899999999999999999999999987555 68999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCC---HHHHHHHHHHHHhCCC- Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVN---LNELSSTLNNMNSALA- 469 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d---~~~~~~~~~~~~~aG~- 469 (518) ....+..++.+++..+..+|+++++.++.+.... .........+.|.|.+....+ ..+.++.++|++++|. T Consensus 318 ~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~-----~~~~~~~~~~~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~ 392 (409) T protein:vir:16 318 SHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDV-----PYLREQFSKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPE 392 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CccchhhccceEEecCCCCcchhhHHHHHHHHHHHHhhccc Confidence 9999999999999999999999999988775321 112223357899999766444 6788999999999973 Q ss_pred -CCHHHHHHHHcCCCCHHH Q lcl|Aclame:pro 470 -MSVEEKVKLIHPKWEDEE 487 (518) Q Consensus 470 -~S~~~~v~~~~~~~~eee 487 (518) +..+....++ ++++.+ T Consensus 393 ~~~~~v~~~~~--g~~~~d 409 (409) T protein:vir:16 393 FINKDTIRDLT--GIKGAE 409 (409) T ss_pred ccchhHHHHhc--cCCCCC Confidence 4456555554 566544 No 74 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=99.59 E-value=2.4e-13 Score=89.81 Aligned_cols=447 Identities=12% Similarity=0.062 Sum_probs=205.0 Q ss_pred CC-cC---------chHHHHHHHHhcCCCChhhHHhhHHHHhhccchh-hhhhhhhhhhhhhccCCCCccccceecCchH Q lcl|Aclame:pro 1 MG-VW---------SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQ-KEWSKDSYLTSLWAQGYVPTVHDKLMNSGTG 69 (518) Q Consensus 1 ~~-~~---------~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~ 69 (518) |= |. ..-|++|+.=|.|...-++ .-..|+|+.+... ....+..|..+.. +..=.|.. T Consensus 1 m~~V~~~hp~y~~~~~~W~~ird~~~G~~~~r~--~g~~YLP~~~~e~~~~e~~~~Y~~rl~----------rA~~~n~~ 68 (501) T protein:vir:95 1 MPNVSFIRPELGKLLPLYYLIRDAIAGEPTVKG--ARTTYLPMPNAEDQSKENKARYEAYLK----------RAVFYNVA 68 (501) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcChHHHHh--cccccCcCCCCCCCcccchHHHHHHhh----------ccccCchH Confidence 33 22 2234444444455421111 0112333332111 1111222332221 12236899 Q ss_pred HHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHH-HhhcChHHHHHHHHHHHHhhCCEEEEEEEEC--C------- Q lcl|Aclame:pro 70 NEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEA-LRIDNFDSKSVKIVELAGGSGVSAVKINILN--G------- 139 (518) Q Consensus 70 ~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~v-l~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~--~------- 139 (518) +.+++.+..++|..+|+++++ +.++.+++.+ .+-++++..++..+..++..|.+.+-+-+.. + T Consensus 69 ~~t~~~l~G~vf~k~p~~~~p-------~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a 141 (501) T protein:vir:95 69 RRTLFGLVGQVFMRDPVVKVP-------ALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIA 141 (501) T ss_pred HHHHHHHhhhhhcCCcceeCc-------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHH Confidence 999999999999999998753 2333333332 2345889999999999999999998775421 1 Q ss_pred -------eEEEEEEcCCeeEEEE---EcCc--EEEEEEEEEEEecCc------eEEEEEEEEeecccceeeeeeccceEE Q lcl|Aclame:pro 140 -------RPSISVHSSSQFWIDF---KNNE--PFRFNFFEEIPTSNK------ADIYYLVESREIKQWDKEGKKLSGGFV 201 (518) Q Consensus 140 -------~i~i~~v~ad~~~P~~---~~g~--~~~~~f~~~~~~~~~------~~~y~~lE~he~~~~~~~~~~~~~~~I 201 (518) +|.|..+.|.+++=-- .+|+ ++-+++.+.....+. ...|+.|+.- ..|.. T Consensus 142 ~~~~~~~rPy~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~------------~~g~~ 209 (501) T protein:vir:95 142 DLEAGRIRPTLYVYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLD------------EEGYY 209 (501) T ss_pred HHHhccCCcEEEEecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeC------------CCceE Confidence 3678888887765521 2342 445555444432221 2234444321 23455 Q ss_pred EEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHH Q lcl|Aclame:pro 202 TYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAV 281 (518) Q Consensus 202 ~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~l 281 (518) .+++|+.+........+.+.+.... ...+..... -.+....++|+++-. ..|.... |.+-|-++- .+ T Consensus 210 ~~~v~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---g~~~l~~IPfv~~~~-~~~~~~~----~~pPLl~lA----~l 276 (501) T protein:vir:95 210 VHEIWREPQPTKADGSKIPKGNYQQ-YVVYKPTDA---QGKRLTEIPFMFIGS-ENNDSNP----DNPNFYDLA----SL 276 (501) T ss_pred EEEEEEecCCcccCcceecCCcccc-cceeeeecc---CCCcCCeeeEEEEec-CCCCCCC----CccchHHHH----HH Confidence 5666765433211111111111000 000000000 012222233333311 1121121 333333222 23 Q ss_pred HHHHHHHH----HHHH-hccceeeechhhhccC-CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHH Q lcl|Aclame:pro 282 DYFFTVYM----REGE-KTKTKIAASERMFRKK-VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDG 355 (518) Q Consensus 282 D~~~s~~~----~e~~-~g~~ri~v~~~~l~~~-~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~ 355 (518) |..+-|.. +.+. .+.+..++. .+-+.. ..+.. ....+.. + ....-..+++ +.+++++-..- T Consensus 277 ni~hy~~ssd~~~~l~~~~~P~l~i~-G~~~~~~~~~~~--~~i~~G~--~------~~~~lP~~~~--~~~ie~~~~~i 343 (501) T protein:vir:95 277 NMAHYRNSADYEESCYIVGQPTPVLI-GLTEEWVTNVLK--GSVNFGS--R------GGIPLPVGAD--AKLLQASENTM 343 (501) T ss_pred HHHHHhhhhHHHHHHHHcccceeeee-CCcccccccCCC--Cceeecc--c------ccccCCCCCc--eeEEecChhhH Confidence 33332222 2233 344444332 111100 00000 0011111 1 1111112222 34455533221 Q ss_pred HHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC Q lcl|Aclame:pro 356 SYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAI 435 (518) Q Consensus 356 ~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~ 435 (518) + .+.++.+-+++.. .| ...+.-..+++|||+...+.++..+....+...++.++.++++.+... . . . T Consensus 344 ~-~~~l~~l~~~m~~-~G--a~ll~~~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~a~w---~-g-----~ 410 (501) T protein:vir:95 344 L-KEAMDTKERQMVA-LG--AKLVEQKEVQRTATEAELEAASEGSTLSSATKNVSAAFEWALKWAARW---V-G-----Q 410 (501) T ss_pred H-HHHHHHHHHHHHH-HH--HhhccCCccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---c-C-----C Confidence 1 2334444333322 22 222233345689999988988889999999999999988877655432 1 1 1 Q ss_pred cCCceeeEEEeCCCCCCC-HHHHHHHHHHHHhCCCCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCc Q lcl|Aclame:pro 436 MRDEIRVIIEFPDPMSVN-LNELSSTLNNMNSALAMSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM 513 (518) Q Consensus 436 ~~~~~~v~v~f~D~i~~d-~~~~~~~~~~~~~aG~~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~ 513 (518) ......|+++ .|-...+ ..+.++.+.+++.+|.+|.+++++.+- .+.-+.+.++|.++|.+|.....+-+....+.. T Consensus 411 ~~~~~~v~i~-~df~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~~v~~~~~~~e~e~i~~~~~~~~~~~~~~~~~~ 489 (501) T protein:vir:95 411 ADSGVKFELN-TDFDIARMTPDERRSLVEEWQKGAITFEEMRTGLRKAGVATEDDSKAKEKIAKDTAEAMALATPANVPG 489 (501) T ss_pred CCCceEEEEe-cccccccCCHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCCChhHHHHHHHHHhhhcCcccccccCCCCC Confidence 1122334442 3333333 345577788999999999999965551 234444445556677665443322222222333 Q ss_pred CCCCC Q lcl|Aclame:pro 514 ETKGG 518 (518) Q Consensus 514 ~~~gG 518 (518) ...|| T Consensus 490 ~~~gg 494 (501) T protein:vir:95 490 DGSGG 494 (501) T ss_pred CCccc Confidence 45566 No 75 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=99.56 E-value=7.6e-13 Score=87.04 Aligned_cols=447 Identities=11% Similarity=0.003 Sum_probs=208.0 Q ss_pred CCcCc--------------hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhh-hhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 1 MGVWS--------------VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQK-EWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 1 ~~~~~--------------~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) .|--| .-|++|+.=|.|....++ .-.+|+++.+.... .-.+..|..++. +-.= T Consensus 28 ~~~~m~dV~~~hp~y~a~~~~W~~ird~~~G~~~~r~--~g~~YLP~~~~~~~~~E~~~~Y~~rl~----------rA~~ 95 (535) T protein:vir:80 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKA--KREEYLPMPSVDSRDEEQRRRYETYLQ----------RAIF 95 (535) T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHh--cccccCCCCCcccCCcCCHHHHHHHHh----------hccC Confidence 33333 345555555566432111 11234444332211 111222333222 1223 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHH-HhhcChHHHHHHHHHHHHhhCCEEEEEEEEC------ Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEA-LRIDNFDSKSVKIVELAGGSGVSAVKINILN------ 138 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~v-l~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~------ 138 (518) .|+.+.+++.++.++|..+|+++++ +.++.+++.+ .+-++++..++..+..++..|.+.+-+-+.. T Consensus 96 ~n~~~~tl~~l~G~vfrk~p~~~~p-------~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~P~~~~~~t 168 (535) T protein:vir:80 96 YNVTARTLDGMMGQVFSRDPIRQLP-------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVT 168 (535) T ss_pred CChhHHHHHHHhchhhcCCcceecc-------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCccc Confidence 6899999999999999999988764 2333333322 3345888999999999999999998775532 Q ss_pred --------CeEEEEEEcCCeeEEEE---EcC--cEEEEEEEEEEEecCc------eEEEEEEEEeecccceeeeeeccce Q lcl|Aclame:pro 139 --------GRPSISVHSSSQFWIDF---KNN--EPFRFNFFEEIPTSNK------ADIYYLVESREIKQWDKEGKKLSGG 199 (518) Q Consensus 139 --------~~i~i~~v~ad~~~P~~---~~g--~~~~~~f~~~~~~~~~------~~~y~~lE~he~~~~~~~~~~~~~~ 199 (518) -+|-|..+.|.+++=.- .+| .++-+++.+.+...+. ...|+.|+... .|.| T Consensus 169 ~ade~~~~~rPy~~~y~ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~~~----------~G~y 238 (535) T protein:vir:80 169 VLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNA----------EGNY 238 (535) T ss_pred HHHHHhcCCCcEEEEechhhccCccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEecC----------CceE Confidence 13778888888866521 134 3555666555443221 22455555432 2345 Q ss_pred EEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHH Q lcl|Aclame:pro 200 FVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLF 279 (518) Q Consensus 200 ~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~ 279 (518) .+ .+|+.+....+..... + .+ ..... .+....++|+++... .|... .|.+-|-++..+-- T Consensus 239 ~v--~~~~~~~~~~~~~~~~---~---~~------~~~~g-~~~l~~IPfv~~~~~-~~~~~----~~~pPLl~LA~lni 298 (535) T protein:vir:80 239 QV--ERWRRETQEEMYYSYS---K---HV------PTDGN-GNPFKEIPFQFIGPL-DNNAD----IDHPPLLDLCEVNI 298 (535) T ss_pred EE--EEEEeecCCccccccc---e---ee------cccCC-CcccCeeEEEEeecC-CCCCC----CCccchHHHHHHHH Confidence 54 3454333322211100 0 00 00000 122222222233211 12222 24444433333322 Q ss_pred HHHHHHHHHHHHHH-hccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHH Q lcl|Aclame:pro 280 AVDYFFTVYMREGE-KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYR 358 (518) Q Consensus 280 ~lD~~~s~~~~e~~-~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~ 358 (518) +.=..-|.+.+.+. .+.+..++. .+-......... +..+..+-........++...+-++++.-=..+.+ T Consensus 299 ~Hy~~ssd~~~il~~~~~P~l~i~-G~~~~~~~~~~~--------~~~i~iG~~~~~~lP~~~~~~~~e~~~~~~a~~~l 369 (535) T protein:vir:80 299 GHYRNSADYEEMAFVAGQPTAFFT-GLTKDWVEDVFK--------DFKVHLGSRAIIPLPQGATAGILQITPNSVPFEAM 369 (535) T ss_pred HHhhchhHHHHHHHHhcCceeeee-cCchhhhhcCCC--------CcceEecCcccccCCCCCCcceeeeccchhHHHHH Confidence 21111112223333 344544442 111000000000 00011111111111223333444555532222333 Q ss_pred HHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCC Q lcl|Aclame:pro 359 ETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRD 438 (518) Q Consensus 359 ~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~ 438 (518) +.++..|+. ++...+.-..++.|||+..-+.+...+....+...++.++.++++.+.. +.+..... ... T Consensus 370 ~~~e~qM~~------lGa~ll~~~~~~~Ta~~a~~~~~~~~S~L~~~a~~le~al~~aL~~~A~----w~G~~~~~-~~~ 438 (535) T protein:vir:80 370 THKESQMIA------MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQ----FQTGIVND-ETV 438 (535) T ss_pred HHHHHHHHH------HHHHhhccCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HcCCccCC-Cce Confidence 333333333 2333344445678999988888888888888899999988887765432 22111111 111 Q ss_pred ceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcC-C-CCH-HHHHHHHHHHHHhccccC----CCCchhcc Q lcl|Aclame:pro 439 EIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHP-K-WED-EEIQAEVKRIYLENAIGE----VPDPEAIG 511 (518) Q Consensus 439 ~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~-~-~~e-eea~eev~rI~~E~~~~~----~~dp~~~~ 511 (518) .+.++-+|.+... | .+.++.+.+++++|.+|.+++++.+-- + .+. ...++|..||+.|..... ++.+...| T Consensus 439 ~i~~n~dF~~~~l-d-~~~~~all~~~~~G~Is~et~~~~L~r~gvl~~~~~~eee~~ri~~E~~~~~~~~g~~~d~~~~ 516 (535) T protein:vir:80 439 EYNLNTDFPAARL-T-PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASG 516 (535) T ss_pred EEEeccccccccC-C-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcccchHHHHHHHHhhhhhccccCCCCCCCCCC Confidence 2334455553322 3 346677788899999999998776621 2 222 233567778887722211 11222222 Q ss_pred Cc------CCCCC Q lcl|Aclame:pro 512 GM------ETKGG 518 (518) Q Consensus 512 ~~------~~~gG 518 (518) +- |+.|| T Consensus 517 g~~~~~~~~~~~~ 529 (535) T protein:vir:80 517 GTNKAKLNNGNGG 529 (535) T ss_pred CCCcCcccCCccc Confidence 22 34444 No 76 >protein:vir:93630 Length: 776 # NCBI annotation: Bcep22gp51 # Family: family:all:487 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944280;genbank:gi:38640357;genbank:GeneID:2658279 Probab=99.55 E-value=1.8e-13 Score=90.52 Aligned_cols=479 Identities=11% Similarity=-0.053 Sum_probs=229.9 Q ss_pred CCcCch---HHHHHHHHhcCCCChhhHHhhHHHH-------hhccchhhhhhhhhhhhhhhccCCCCccccceecCchHH Q lcl|Aclame:pro 1 MGVWSV---MTRFIKGWLNGKPNGSEPELIPKYL-------PLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGN 70 (518) Q Consensus 1 ~~~~~~---~~~~~~~w~~g~p~~~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~ 70 (518) =+-+-. +-+.|.+||.-. .+....|+ ..|.|+++.-..... ..-..+..++.|+-+ T Consensus 37 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~r~~a~~d~~fy~G~Qw~~~~~~~---------l~~~g~p~~~~N~i~ 102 (776) T protein:vir:93 37 PLDSEQAVELHSRLLSYYRQE-----LSRQQDNRAEMAVDEDYYDNIQWSQDEIDE---------LKERGQAPTVYNVIS 102 (776) T ss_pred CCCCHHHHHHHHHHHHHHHHH-----HhhchHHHHHHHHHHHHhCCCCCCHHHHHH---------HHhcCCceEEecchH Confidence 111111 334555666422 12222222 223333221111110 011234457889999 Q ss_pred HHHHHHHHHHcCCcceEEeccccccchHH----HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----CeEE Q lcl|Aclame:pro 71 EIVVVAAEYISGKPLSIDVTGVNGSKDEN----LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN----GRPS 142 (518) Q Consensus 71 ~i~~~~A~ll~~e~~~i~v~~~~~~~d~~----~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----~~i~ 142 (518) .+++.......+-.+.+.|...+. +|+. ++..++.+...|+......++..+++..|-++++++++. +.++ T Consensus 103 ~~i~~v~g~~~~nr~~~~~~p~~~-~d~~~Ae~l~~~~~~~~~~~~~~~~~~~af~d~~~~G~G~~~v~~d~~~~~~~~~ 181 (776) T protein:vir:93 103 QSVNWIIGSEKRGRSDFKVLPRRK-DGGKAAERKTALLKYLSDVNHTPFERSMAFEETTKAGIGWLESQVQDENDGEPIY 181 (776) T ss_pred HHHHHHHHHHHhCCcceEEecCCh-hHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhcCcceEEEEeeccCCCCceE Confidence 999999888888888899987655 3433 455677788889999999999999999999999999974 3466 Q ss_pred EEEEcCCeeEEEEEc--CcEEEE--EEEEEEEe--------cCc-------------------eEEEEEEEEeeccc--- Q lcl|Aclame:pro 143 ISVHSSSQFWIDFKN--NEPFRF--NFFEEIPT--------SNK-------------------ADIYYLVESREIKQ--- 188 (518) Q Consensus 143 i~~v~ad~~~P~~~~--g~~~~~--~f~~~~~~--------~~~-------------------~~~y~~lE~he~~~--- 188 (518) +.++++..||+-..- -++.+| +|...... +++ .....++..++... T Consensus 182 ~~~~~p~~i~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (776) T protein:vir:93 182 AGAESWRNILWDSTYRRLDMDDCRYIFRVKWVDLDVMLAIFPERAAQLRAAAVDNFETWGTDDIDGDDAMDSPEYERSMN 261 (776) T ss_pred eeccChhheeeccccccCCHHHHhhhhhhccCCHHHHHHhcCCchHHHHHhhhhcccccchhcccccccccccccccccc Confidence 788899888885422 223332 32221000 000 00000111111000 Q ss_pred ------------ceeeeeeccceEEEEEEEeccCC--ccccccccccccc------------------cccccccccCc- Q lcl|Aclame:pro 189 ------------WDKEGKKLSGGFVTYSVIKIDGD--KTTPISAERLPEQ------------------ITSYLHTNDIQ- 235 (518) Q Consensus 189 ------------~~~~~~~~~~~~I~n~ly~~~~~--~~v~~~~~~~~~~------------------~~~~~~~~~~~- 235 (518) .....|.+.+-.++..++.+..+ ..+.......... ...+.....+. T Consensus 262 ~~~~~~~~~~~~~v~v~E~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~g~~~l~ 341 (776) T protein:vir:93 262 SVTAGAVAYARKRVRMIEAWFRMPVRVQRLKGRNSDFRGEVFDPNDERHVLEVESGRAVLAVSPMMRMHCAIMTTRDLMW 341 (776) T ss_pred cccccccccCCCeEEEEEEEEeeeeehhhcccccccccceeecccchHHHHHhhcCceeehheeeeeeEEEEEecchhhh Confidence 00000000000011111111111 1100000000000 00000000000 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcc Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTD 315 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~ 315 (518) ....-.-+...||+++... ....+.+|.|++..+++..+.+|...|++.|-+ +..+++++++.+.....-... T Consensus 342 ~~~~p~~~~~~Pfv~~~~~-----~~~~~~~~~G~v~~~~d~Q~~~N~~~s~~~~~l--~~~~~~~~~gav~~~d~~~~~ 414 (776) T protein:vir:93 342 AGPSPYRHNRYPFTPIWGF-----RRARDGMPYGVIRFMRGMQDDVNKRLSKALYIL--STNKVLMEEGAVDDIDEFRRE 414 (776) T ss_pred ccCCCCCCCccceEEecCc-----eecccccccchHHhhhHHHHHHHHHHHHHHHhh--cCCceeeccccccchHHHHHh Confidence 0000011112344433222 234566799999999999999999999998865 566788888776432110000 Q ss_pred ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHH Q lcl|Aclame:pro 316 KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQ 395 (518) Q Consensus 316 ~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~ 395 (518) . +.++ .+ ..++ .+......++. .+.+ ...+++.++.+...+...+|++...+|..++..+++.|.+.. T Consensus 415 ---~-~rp~-~v-i~~~----~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~~~tGi~~~~~G~~~n~~Sg~ai~~~~ 482 (776) T protein:vir:93 415 ---A-ARPD-AV-MTVK----NGKLGAVKMDV-DRDL-APAHLELASRSIQMIQQVGGVTDEMLGRTTNAVSGVAIQARQ 482 (776) T ss_pred ---c-ccCC-ce-eeeC----Ccccccccccc-CcCc-cHHHHHHHHHHHHHHHHhhCcChHHhCCCcchhhHHHHHHHH Confidence 0 0000 01 1111 11111111221 2344 367888899999999999999999999888888888888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC----C------------------CcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 396 DATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEK----A------------------IMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 396 ~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~----~------------------~~~~~~~v~v~f~D~i~~d 453 (518) ...........+.+..+++.+.+.+|.+...++..... + .....++|.|+=+.+...- T Consensus 483 ~~~~~~~~~~~dn~~~~~~~~~~~~l~li~~~~~~~r~~ri~~~~~~~~~v~in~~~~~nd~~~~~~dv~v~~~~~~~s~ 562 (776) T protein:vir:93 483 EQGSVATNKLFDNLRLAFQQHGEKELSLIEQYMTEEKQFRITNSRGNPEYVTVNDGLPENDITRTKADFIIDEAEWRATM 562 (776) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEEeecCCCcceEEecccchhhhhccceeeEEEeecccchhH Confidence 88777788888888889999999998887766432100 0 0012234544444333332 Q ss_pred HHHHHHHHHHHHhCCCCCHHH------HHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccC---cCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSALAMSVEE------KVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGG---METKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG~~S~~~------~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~---~~~~gG 518 (518) .++....++.+.. .+.... .+.... ++. .+++-++++++-+....+..+..... ...... T Consensus 563 r~~~~~~l~ql~~--~~~p~~~~~~~~~~~e~~-d~p--~~~e~~~~l~~~~~~~~p~q~~~~~e~~~~qq~q~ 631 (776) T protein:vir:93 563 RQAAVAELMEVIG--KMPPEIALTMLDLLVENM-DIP--NRDELVKRIRAVNGQKDPDQDEPTPEEIAREQAQQ 631 (776) T ss_pred HHHHHHHHHHHHh--hcChhhHHHHHHHHHHhc-Ccc--chHHHHHHHHHhhcccccchhhcchhHHHHHHHhh Confidence 3444444444432 121111 111111 111 11222233332222111100000000 000000 No 77 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.51 E-value=3.8e-12 Score=83.20 Aligned_cols=439 Identities=8% Similarity=-0.051 Sum_probs=211.0 Q ss_pred chHHHHHHHHhcCCCChhhHHhh-H-HHHhhccchhhhhhhhhhhhhhhccCCCCcc-------------ccceecCchH Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPELI-P-KYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-------------HDKLMNSGTG 69 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~~-~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-------------~~~~~~~~l~ 69 (518) |||.+.+-+|.. |. .-+.+. . ...+.|.+. ..... ...|.....+.. ..-...-+++ T Consensus 1 mn~~dr~i~~~s--P~-~~~~R~~ar~~~~~y~aa----~~~r~-~~~~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a 72 (502) T protein:vir:79 1 MAILDDVIGVFS--PG-WKAARLRSRAVIQAYEAV----KTTRT-HKARRENRTADQLSQYGAVSLREQARYLDNNHDLV 72 (502) T ss_pred CchHhhHHhhcC--hH-HHHHHHhhHHHHhhcccc----Ccccc-cCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHH Confidence 777777767753 31 111111 1 111222211 11100 011111111100 0112356789 Q ss_pred HHHHHHHHHHHcCC-cceE--EeccccccchHHHHHHHHHHHh----------hcChHHHHHHHHHHHHhhCCEEEEEEE Q lcl|Aclame:pro 70 NEIVVVAAEYISGK-PLSI--DVTGVNGSKDENLTKQLKEALR----------IDNFDSKSVKIVELAGGSGVSAVKINI 136 (518) Q Consensus 70 ~~i~~~~A~ll~~e-~~~i--~v~~~~~~~d~~~~~~l~~vl~----------dn~f~~~~~~~~e~~~a~G~~~~k~~~ 136 (518) +.+++.+++.+.+. -..+ ++...+..-++.+++.|+..++ ..+|+....-.+...+..|.++++..+ T Consensus 73 ~~av~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~ 152 (502) T protein:vir:79 73 IGVFDKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVS 152 (502) T ss_pred HHHHHHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEee Confidence 99999999999985 3222 2222222234455555555544 236777777777888889999999888 Q ss_pred ECC---------eEEEEEEcCCeeEEEEE-cCc-EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEE Q lcl|Aclame:pro 137 LNG---------RPSISVHSSSQFWIDFK-NNE-PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSV 205 (518) Q Consensus 137 d~~---------~i~i~~v~ad~~~P~~~-~g~-~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~l 205 (518) +.. ..+|..+.||.+ |... +|. +...| |+.+++ -.+-|.+ T Consensus 153 ~~~~~~~~g~~~~l~lq~iepd~l-~~~~~~~~~i~~GV-----------------e~d~~G-----------r~~aY~i 203 (502) T protein:vir:79 153 GRINSLTPSAGVHFWLEALEPDFI-PMTSDESNRLNQGV-----------------FVDDWG-----------RPEKYLV 203 (502) T ss_pred cccCccCCCcccceEEEEecchhc-CCCCCCCCeeEeee-----------------EECCCC-----------ceEEEEE Confidence 642 148899999886 4322 222 22222 222111 1233334 Q ss_pred EeccCCccccccccccccccccccccccCcccceeecCCCcceEEEec-CcccCccccCCCCCcchhhhhHHHHHHHHHH Q lcl|Aclame:pro 206 IKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLIN-NSPSNTRYPHLNLGESDLSQCTNYLFAVDYF 284 (518) Q Consensus 206 y~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~-n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~ 284 (518) ++...+..... .+..++.+. +.++. +..+ +-.-|+|.|+.++..++.||.- T Consensus 204 ~~~hPgd~~~~-------------~~~rvpA~~----------vlH~f~~~r~-----gQ~RGis~lapvl~~l~~l~~~ 255 (502) T protein:vir:79 204 YKSRPVSGRQM-------------ETKEVDAER----------MLHLKFVRRL-----HQMRGTSLLSGVLIRLSALKEY 255 (502) T ss_pred eecCCCCCccc-------------ceeEechhh----------eEEeecccCC-----ccccCCchHHHHHHHHHHHhHH Confidence 44333221110 011111111 22222 2222 2334999999999999999875 Q ss_pred HHHHHHHHH-hccceeeechhhhccCCCCCccccccCCCcchhheeee-cCCcCCCCCCCccceEecccccHHHHHHHHH Q lcl|Aclame:pro 285 FTVYMREGE-KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQF-KGTLDAGAKLNDMIQFMQGDFRDGSYRETME 362 (518) Q Consensus 285 ~s~~~~e~~-~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~ 362 (518) .+.-..--+ .+--..||-... +........-+........+ .+..-..-.....++.++|.-....|..-.. T Consensus 256 ~dael~~a~i~A~~~~fi~~~~------~~~~~~~~~~~~~~~~~~~l~pG~i~~~L~pGe~i~~~~p~~p~~~~~~f~~ 329 (502) T protein:vir:79 256 EDSELTAARIAAALGMYIRKGD------GQSYEPDGNGSKENERELTIQPGIIYDDLKPGEEIGMVKSDRPNPNLETFRN 329 (502) T ss_pred HHHHHHHHHHhhhheeeeecCC------CcccccccCCCCCccccccccCCccccccCCCceeeeeCCCCCCCCHHHHHH Confidence 554333222 233333332211 11100000000000111111 1111111122345888999888888899999 Q ss_pred HHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccCC--CcCCc Q lcl|Aclame:pro 363 YFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGGTNNKEKA--IMRDE 439 (518) Q Consensus 363 ~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~~~~~~~~--~~~~~ 439 (518) .+++.|...+|+|+..|+-|-+. +=+.+++.....-+++...|..+.. .++.+.+..|+.+-. . ..... ..... T Consensus 330 ~~lr~iaaglGi~ye~lt~D~s~-nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l-~-G~i~~p~~~~~~ 406 (502) T protein:vir:79 330 GQLRAVAAGSRLSFSSTARNYNG-TYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVA-S-GVIRLPRDLDRS 406 (502) T ss_pred HHHHHHHhhcCCCHHHHhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCCCCCCCCCch Confidence 99999999999999999766332 3233334443333444444444443 333333333333221 1 11110 01112 Q ss_pred eeeEEEeC--CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHhccccCCCCchhcc---- Q lcl|Aclame:pro 440 IRVIIEFP--DPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWED--EEIQAEVKRIYLENAIGEVPDPEAIG---- 511 (518) Q Consensus 440 ~~v~v~f~--D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~e--eea~eev~rI~~E~~~~~~~dp~~~~---- 511 (518) .-..+.|- --...|+...++....++.+|++|.++.++..-.++++ ++..+|.+++++- +...+.+|.... T Consensus 407 ~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~-Gl~~~~~~~~~~~~~~ 485 (502) T protein:vir:79 407 SLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGRNPDDVKRRRKAEIDENRKL-DLVFDTDPASDKGGSS 485 (502) T ss_pred hhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc-CCCCCCCCCCCCCCCC Confidence 23466773 33567999999999999999999999999887444433 2333444434332 322222221100 Q ss_pred ----CcCCCCC Q lcl|Aclame:pro 512 ----GMETKGG 518 (518) Q Consensus 512 ----~~~~~gG 518 (518) .-++..+ T Consensus 486 ~~~~~~e~~~~ 496 (502) T protein:vir:79 486 AATKRQEPQHT 496 (502) T ss_pred CCCCCCCCCCC Confidence 0011111 No 78 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=99.47 E-value=8.4e-12 Score=81.31 Aligned_cols=432 Identities=11% Similarity=0.047 Sum_probs=197.9 Q ss_pred CC------c---------CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec Q lcl|Aclame:pro 1 MG------V---------WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN 65 (518) Q Consensus 1 ~~------~---------~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 65 (518) |- | -.+-|.+|+.=|.|..--++ .-.+|++.++..-.. .|..+ . .+-.= T Consensus 1 m~~~~~~~v~~~h~~y~a~~~~W~~ird~~~G~~~~r~--~g~~YLPk~~~E~~~----~Y~~r---------l-~rA~~ 64 (513) T protein:vir:97 1 MADKDPKSPATTSGAYDQMLPRWHVIETLLGGTEAMRE--AGETYLPRHQEETDK----GYQER---------L-ASAVL 64 (513) T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHh--hcccCCCCCCCCCHH----HHHHH---------H-hcccC Confidence 10 1 12333444444444321110 001223322211111 11111 1 12233 Q ss_pred CchHHHHHHHHHHHHcCCcceEEeccccccchHHHHH-HHHH-HHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----- Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTK-QLKE-ALRIDNFDSKSVKIVELAGGSGVSAVKINILN----- 138 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~-~l~~-vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----- 138 (518) .|+.+.+++.++.+||.++|+++.. ..+.+.. ++++ -.+-++++..++..+..++..|.+.+-+-+.. T Consensus 65 ~n~~~~tl~~l~G~vf~k~p~~~~~-----~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~ 139 (513) T protein:vir:97 65 LNMVEQTLDTLSGKPFSEPIKLNED-----VPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPRE 139 (513) T ss_pred CChHHHHHHHHhhhhhhcCcccCcC-----chHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCcc Confidence 6899999999999999999887521 1122222 2222 12456889999999999999999888764421 Q ss_pred -C-------------eEEEEEEcCCeeEEEE---EcCc--EEEEEEEEEEEecCc---e--EEEEEEEEeecccceeeee Q lcl|Aclame:pro 139 -G-------------RPSISVHSSSQFWIDF---KNNE--PFRFNFFEEIPTSNK---A--DIYYLVESREIKQWDKEGK 194 (518) Q Consensus 139 -~-------------~i~i~~v~ad~~~P~~---~~g~--~~~~~f~~~~~~~~~---~--~~y~~lE~he~~~~~~~~~ 194 (518) + +|-|..+.|.+++=.- .+|+ ++-+++.+.+...|. + +.|++|+. T Consensus 140 ~~~~~T~Ade~~~~~rPy~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~----------- 208 (513) T protein:vir:97 140 DGQPRTLADDRREGLRPYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEP----------- 208 (513) T ss_pred chhHHhHHHHHhhccCceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeC----------- Confidence 1 3668888888776521 2453 444554443332221 1 11222221 Q ss_pred eccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhh Q lcl|Aclame:pro 195 KLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQC 274 (518) Q Consensus 195 ~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~ 274 (518) +.+ ++|+-........ .+|.-+... .+....++|+++... .|... -|.+-|-++ T Consensus 209 --g~~----~v~r~~~~~~~~~------------~e~~~~~~g---~~~l~~IP~v~~~~~-~~~~~----~~~pPLl~L 262 (513) T protein:vir:97 209 --GLV----QLWEPVKKSNAQK------------EEWALADEW---ATGLNYVPLVTFYAD-RQGFM----MGKPPLLDL 262 (513) T ss_pred --ceE----EEEEeecCCCccc------------cceEEecCC---CCcCCceeEEEEecC-CCCCC----CCccchHHH Confidence 222 2333221111100 011111100 122223333333221 12222 144444433 Q ss_pred HHHHHHHHHHHHHHHHHHHh-ccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccccc Q lcl|Aclame:pro 275 TNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFR 353 (518) Q Consensus 275 ~~~i~~lD~~~s~~~~e~~~-g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir 353 (518) ..+=.+.=...|.+-..+.. +.+..++. .+ .+.. .+.+..+-+.....-++ ...+.+++|+-. T Consensus 263 A~ln~~hy~~~Sd~~~il~~~~~P~l~~~-G~----~~~~----------~~~i~iG~~~~~~lpe~-~~~~~yie~~g~ 326 (513) T protein:vir:97 263 AHLNVAHWQSASDQRHILTVSRFPILACS-GA----SGED----------SDPVVVGPNKVLYNPDP-AGRFYYVEHTGQ 326 (513) T ss_pred HHHHHHHHhhhhhHHHHHHhcccceeeee-cC----CcCC----------CCceEeeccccccCCCC-CCcceeeccCch Confidence 33322222222223333333 44444442 11 0000 00111111111111111 123566777655 Q ss_pred H-HHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 354 D-GSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKE 432 (518) Q Consensus 354 ~-~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~ 432 (518) . +++.+.+..+-+++ ...|. ..+....+++|||+...+.++..+....++..++.++.++++.+.... .. T Consensus 327 ~i~~~~~~l~~le~qm-~~~Ga--~ll~~~~~~~Ta~a~~~~~~~~~S~L~~~a~~le~al~~~l~~~a~wl----g~-- 397 (513) T protein:vir:97 327 AIAAGRTDLKDLEEQM-AGYGA--EFLKRKTGGQTATARALDSAEATSDLSAMTGLFEDALAQALDITADWL----RL-- 397 (513) T ss_pred hHHHHHHHHHHHHHHH-HHHHH--HhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CC-- Confidence 3 44555555555444 33332 223334456899999999999999999999999999988876654321 11 Q ss_pred CCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHc------CCCC-HHHHHHHHHHHHHhccccCCC Q lcl|Aclame:pro 433 KAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH------PKWE-DEEIQAEVKRIYLENAIGEVP 505 (518) Q Consensus 433 ~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~------~~~~-eeea~eev~rI~~E~~~~~~~ 505 (518) ......+.++-+|..... ..+.++.+.++.++|.+|.+++++.+- |+.+ +++.+++.+||.+..+....+ T Consensus 398 -~~~~~~v~in~dF~~~~~--~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~~d~d~~~~~e~~~~~~~~~~~~~~~d 474 (513) T protein:vir:97 398 -GPNGGTVELVKDYDLEEM--DAPGLQALQVAREKRDISRKTYLNGLRLRGVLPEDFDEDEDWEELMEEISEAMGRAGLD 474 (513) T ss_pred -CCCccEEEeccccCcccC--CHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCccCCHHHHHHHHHHhhhhccCCCCcc Confidence 111123445555654332 334667788899999999988876652 3334 334566666666554321100 Q ss_pred -C-----ch-h---------ccCcCCCCC Q lcl|Aclame:pro 506 -D-----PE-A---------IGGMETKGG 518 (518) Q Consensus 506 -d-----p~-~---------~~~~~~~gG 518 (518) + |. . -++-+.++| T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (513) T protein:vir:97 475 LDPAQKNPPEGGEGEGEGEGEGGEGGEGG 503 (513) T ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCcc Confidence 0 00 0 001111111 No 79 >protein:vir:817 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050550;genbank:gi:9633447;genbank:GeneID:1262279 Probab=99.47 E-value=8.4e-12 Score=81.31 Aligned_cols=488 Identities=11% Similarity=0.043 Sum_probs=247.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC---CCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY---VPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~l~~~i~~~~A 77 (518) =++.--+.+.+.+||.- +.+.-+.|+.....+.+++. -.+|...- -.-..+..++.|+-+.+++... T Consensus 14 ~~~~~~~~~~~~~~~~~-----~~~~~~~~R~~a~~d~~fy~-----G~Qw~~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:81 14 NGATPRFSQRQLQALCS-----DIDSQPKWRDAANKACAYYD-----GDQLPPEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred cchhHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 11122233456777743 33344444432222222221 12332100 0112344578899999999999 Q ss_pred HHHcCCcceEEecccccc-ch----HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----CeEEEEEEcC Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGS-KD----ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN----GRPSISVHSS 148 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~-~d----~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----~~i~i~~v~a 148 (518) ..--.-.+.+.|.+.+.. .+ +.++..+..+...++......++.+.++.-|-+++..+++. +.|+|..|++ T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:81 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 998888899999875432 22 34456677777888999999999999999999999998873 5789999999 Q ss_pred CeeEEEEE--cCcEEE--EEEEEEEEe--------cCceEEE--------------E--------EEEEeecccc----- Q lcl|Aclame:pro 149 SQFWIDFK--NNEPFR--FNFFEEIPT--------SNKADIY--------------Y--------LVESREIKQW----- 189 (518) Q Consensus 149 d~~~P~~~--~g~~~~--~~f~~~~~~--------~~~~~~y--------------~--------~lE~he~~~~----- 189 (518) ..+++-+. ..++.+ .+|+..... +++..+. + ...+.....+ T Consensus 164 ~~v~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714) T protein:vir:81 164 NEVFWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQQN 243 (714) T ss_pred hheeeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccccc Confidence 99998642 222333 333332111 0000000 0 0000000000 Q ss_pred ---------eeeeeeccceEEEEEEEeccCCcccccccccc------------------ccccccccccccCcccceeec Q lcl|Aclame:pro 190 ---------DKEGKKLSGGFVTYSVIKIDGDKTTPISAERL------------------PEQITSYLHTNDIQLNHSVSI 242 (518) Q Consensus 190 ---------~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~t 242 (518) ...++...+-.....++...+++.+....... ......+.....+... -+. T Consensus 244 ~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~--~~~ 321 (714) T protein:vir:81 244 EWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVD--RPC 321 (714) T ss_pred ccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCccccc--CCC Confidence 00011111111122222322332221111000 0000000000000000 011 Q ss_pred CCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCC Q lcl|Aclame:pro 243 GLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMN 322 (518) Q Consensus 243 g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d 322 (518) ..+.-.|+|+|..+.-..-.+-|+| ...++++.++.+|...|+..+-+ +..++++.+..+...... -...-..++ T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~~-~~e~~arp~ 396 (714) T protein:vir:81 322 SAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDND-LMEQIERPD 396 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHHH-HHHhccCCC Confidence 1222234555443322222234554 78899999999999999998865 344455544443221100 000000011 Q ss_pred cchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKI 402 (518) Q Consensus 323 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~ 402 (518) -...++..-..+......++...+.--..++++.++.....|...+|++...+|..++..++.+|.++........ T Consensus 397 ----~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~~l 472 (714) T protein:vir:81 397 ----GIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGATTL 472 (714) T ss_pred ----CceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHHHH Confidence 1111111111222223445655544445788899999988999999999999998888888888888887777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-----------------------------CcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 403 EKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKA-----------------------------IMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 403 ~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~-----------------------------~~~~~~~v~v~f~D~i~~d 453 (518) ......+..+.+.+-+.+|.+...++...... .....++|.|+=..+.+.- T Consensus 473 ~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~t~ 552 (714) T protein:vir:81 473 AEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTPAF 552 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCchHH Confidence 77888888888888888888776554221100 0122445666655655565 Q ss_pred HHHHHHHHHHHHhCC-----CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSAL-----AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG-----~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++.++.++.+.++- .......|+.+ ++. -+++.+++|++-+....+++|. ..+.= T Consensus 553 r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~--d~p--~~~el~~~ir~~~~~~~~~~~~-----~~e~q 613 (714) T protein:vir:81 553 KAQLAQRMSEVIQGLPPQVQAVVLDLWVNLL--DVP--QKQEFVERIRAALGTPKSPDEM-----TPEEQ 613 (714) T ss_pred HHHHHHHHHHHHhhcCchhhhhHHHHHHHhc--CCC--CHHHHHHHHHHHcCCCCCcccc-----chhhH Confidence 677777777776431 11122223222 332 2444566666544332211111 00010 No 80 >protein:vir:10117 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859247;genbank:gi:32171003;genbank:GeneID:2653343 Probab=99.47 E-value=8.4e-12 Score=81.31 Aligned_cols=488 Identities=11% Similarity=0.043 Sum_probs=247.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC---CCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY---VPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~l~~~i~~~~A 77 (518) =++.--+.+.+.+||.- +.+.-+.|+.....+.+++. -.+|...- -.-..+..++.|+-+.+++... T Consensus 14 ~~~~~~~~~~~~~~~~~-----~~~~~~~~R~~a~~d~~fy~-----G~Qw~~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:10 14 NGATPRFSQRQLQALCS-----DIDSQPKWRDAANKACAYYD-----GDQLPPEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred cchhHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 11122233456777743 33344444432222222221 12332100 0112344578899999999999 Q ss_pred HHHcCCcceEEecccccc-ch----HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----CeEEEEEEcC Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGS-KD----ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN----GRPSISVHSS 148 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~-~d----~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----~~i~i~~v~a 148 (518) ..--.-.+.+.|.+.+.. .+ +.++..+..+...++......++.+.++.-|-+++..+++. +.|+|..|++ T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:10 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 998888899999875432 22 34456677777888999999999999999999999998873 5789999999 Q ss_pred CeeEEEEE--cCcEEE--EEEEEEEEe--------cCceEEE--------------E--------EEEEeecccc----- Q lcl|Aclame:pro 149 SQFWIDFK--NNEPFR--FNFFEEIPT--------SNKADIY--------------Y--------LVESREIKQW----- 189 (518) Q Consensus 149 d~~~P~~~--~g~~~~--~~f~~~~~~--------~~~~~~y--------------~--------~lE~he~~~~----- 189 (518) ..+++-+. ..++.+ .+|+..... +++..+. + ...+.....+ T Consensus 164 ~~v~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714) T protein:vir:10 164 NEVFWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQQN 243 (714) T ss_pred hheeeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccccc Confidence 99998642 222333 333332111 0000000 0 0000000000 Q ss_pred ---------eeeeeeccceEEEEEEEeccCCcccccccccc------------------ccccccccccccCcccceeec Q lcl|Aclame:pro 190 ---------DKEGKKLSGGFVTYSVIKIDGDKTTPISAERL------------------PEQITSYLHTNDIQLNHSVSI 242 (518) Q Consensus 190 ---------~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~t 242 (518) ...++...+-.....++...+++.+....... ......+.....+... -+. T Consensus 244 ~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~--~~~ 321 (714) T protein:vir:10 244 EWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVD--RPC 321 (714) T ss_pred ccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCccccc--CCC Confidence 00011111111122222322332221111000 0000000000000000 011 Q ss_pred CCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCC Q lcl|Aclame:pro 243 GLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMN 322 (518) Q Consensus 243 g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d 322 (518) ..+.-.|+|+|..+.-..-.+-|+| ...++++.++.+|...|+..+-+ +..++++.+..+...... -...-..++ T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~~-~~e~~arp~ 396 (714) T protein:vir:10 322 SAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDND-LMEQIERPD 396 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHHH-HHHhccCCC Confidence 1222234555443322222234554 78899999999999999998865 344455544443221100 000000011 Q ss_pred cchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKI 402 (518) Q Consensus 323 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~ 402 (518) -...++..-..+......++...+.--..++++.++.....|...+|++...+|..++..++.+|.++........ T Consensus 397 ----~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~~l 472 (714) T protein:vir:10 397 ----GIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGATTL 472 (714) T ss_pred ----CceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHHHH Confidence 1111111111222223445655544445788899999988999999999999998888888888888887777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-----------------------------CcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 403 EKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKA-----------------------------IMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 403 ~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~-----------------------------~~~~~~~v~v~f~D~i~~d 453 (518) ......+..+.+.+-+.+|.+...++...... .....++|.|+=..+.+.- T Consensus 473 ~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~t~ 552 (714) T protein:vir:10 473 AEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTPAF 552 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCchHH Confidence 77888888888888888888776554221100 0122445666655655565 Q ss_pred HHHHHHHHHHHHhCC-----CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSAL-----AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG-----~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++.++.++.+.++- .......|+.+ ++. -+++.+++|++-+....+++|. ..+.= T Consensus 553 r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~--d~p--~~~el~~~ir~~~~~~~~~~~~-----~~e~q 613 (714) T protein:vir:10 553 KAQLAQRMSEVIQGLPPQVQAVVLDLWVNLL--DVP--QKQEFVERIRAALGTPKSPDEM-----TPEEQ 613 (714) T ss_pred HHHHHHHHHHHHhhcCchhhhhHHHHHHHhc--CCC--CHHHHHHHHHHHcCCCCCcccc-----chhhH Confidence 677777777776431 11122223222 332 2444566666544332211111 00010 No 81 >protein:vir:2764 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612881;genbank:gi:20065798;genbank:GeneID:935623 Probab=99.47 E-value=8.4e-12 Score=81.31 Aligned_cols=488 Identities=11% Similarity=0.043 Sum_probs=247.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC---CCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY---VPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~l~~~i~~~~A 77 (518) =++.--+.+.+.+||.- +.+.-+.|+.....+.+++. -.+|...- -.-..+..++.|+-+.+++... T Consensus 14 ~~~~~~~~~~~~~~~~~-----~~~~~~~~R~~a~~d~~fy~-----G~Qw~~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:27 14 NGATPRFSQRQLQALCS-----DIDSQPKWRDAANKACAYYD-----GDQLPPEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred cchhHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 11122233456777743 33344444432222222221 12332100 0112344578899999999999 Q ss_pred HHHcCCcceEEecccccc-ch----HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----CeEEEEEEcC Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGS-KD----ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN----GRPSISVHSS 148 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~-~d----~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----~~i~i~~v~a 148 (518) ..--.-.+.+.|.+.+.. .+ +.++..+..+...++......++.+.++.-|-+++..+++. +.|+|..|++ T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:27 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 998888899999875432 22 34456677777888999999999999999999999998873 5789999999 Q ss_pred CeeEEEEE--cCcEEE--EEEEEEEEe--------cCceEEE--------------E--------EEEEeecccc----- Q lcl|Aclame:pro 149 SQFWIDFK--NNEPFR--FNFFEEIPT--------SNKADIY--------------Y--------LVESREIKQW----- 189 (518) Q Consensus 149 d~~~P~~~--~g~~~~--~~f~~~~~~--------~~~~~~y--------------~--------~lE~he~~~~----- 189 (518) ..+++-+. ..++.+ .+|+..... +++..+. + ...+.....+ T Consensus 164 ~~v~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714) T protein:vir:27 164 NEVFWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQQN 243 (714) T ss_pred hheeeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccccc Confidence 99998642 222333 333332111 0000000 0 0000000000 Q ss_pred ---------eeeeeeccceEEEEEEEeccCCcccccccccc------------------ccccccccccccCcccceeec Q lcl|Aclame:pro 190 ---------DKEGKKLSGGFVTYSVIKIDGDKTTPISAERL------------------PEQITSYLHTNDIQLNHSVSI 242 (518) Q Consensus 190 ---------~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~t 242 (518) ...++...+-.....++...+++.+....... ......+.....+... -+. T Consensus 244 ~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~--~~~ 321 (714) T protein:vir:27 244 EWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVD--RPC 321 (714) T ss_pred ccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCccccc--CCC Confidence 00011111111122222322332221111000 0000000000000000 011 Q ss_pred CCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCC Q lcl|Aclame:pro 243 GLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMN 322 (518) Q Consensus 243 g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d 322 (518) ..+.-.|+|+|..+.-..-.+-|+| ...++++.++.+|...|+..+-+ +..++++.+..+...... -...-..++ T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~~-~~e~~arp~ 396 (714) T protein:vir:27 322 SAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDND-LMEQIERPD 396 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHHH-HHHhccCCC Confidence 1222234555443322222234554 78899999999999999998865 344455544443221100 000000011 Q ss_pred cchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKI 402 (518) Q Consensus 323 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~ 402 (518) -...++..-..+......++...+.--..++++.++.....|...+|++...+|..++..++.+|.++........ T Consensus 397 ----~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~~l 472 (714) T protein:vir:27 397 ----GIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGATTL 472 (714) T ss_pred ----CceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHHHH Confidence 1111111111222223445655544445788899999988999999999999998888888888888887777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-----------------------------CcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 403 EKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKA-----------------------------IMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 403 ~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~-----------------------------~~~~~~~v~v~f~D~i~~d 453 (518) ......+..+.+.+-+.+|.+...++...... .....++|.|+=..+.+.- T Consensus 473 ~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~t~ 552 (714) T protein:vir:27 473 AEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTPAF 552 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCchHH Confidence 77888888888888888888776554221100 0122445666655655565 Q ss_pred HHHHHHHHHHHHhCC-----CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSAL-----AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG-----~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++.++.++.+.++- .......|+.+ ++. -+++.+++|++-+....+++|. ..+.= T Consensus 553 r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~--d~p--~~~el~~~ir~~~~~~~~~~~~-----~~e~q 613 (714) T protein:vir:27 553 KAQLAQRMSEVIQGLPPQVQAVVLDLWVNLL--DVP--QKQEFVERIRAALGTPKSPDEM-----TPEEQ 613 (714) T ss_pred HHHHHHHHHHHHhhcCchhhhhHHHHHHHhc--CCC--CHHHHHHHHHHHcCCCCCcccc-----chhhH Confidence 677777777776431 11122223222 332 2444566666544332211111 00010 No 82 >protein:vir:3296 Length: 714 # NCBI annotation: putative portal protein # Family: family:all:487 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049512;genbank:gi:9632518;genbank:GeneID:1262005 Probab=99.47 E-value=8.4e-12 Score=81.31 Aligned_cols=488 Identities=11% Similarity=0.043 Sum_probs=247.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC---CCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY---VPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~l~~~i~~~~A 77 (518) =++.--+.+.+.+||.- +.+.-+.|+.....+.+++. -.+|...- -.-..+..++.|+-+.+++... T Consensus 14 ~~~~~~~~~~~~~~~~~-----~~~~~~~~R~~a~~d~~fy~-----G~Qw~~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:32 14 NGATPRFSQRQLQALCS-----DIDSQPKWRDAANKACAYYD-----GDQLPPEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred cchhHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 11122233456777743 33344444432222222221 12332100 0112344578899999999999 Q ss_pred HHHcCCcceEEecccccc-ch----HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----CeEEEEEEcC Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGS-KD----ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN----GRPSISVHSS 148 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~-~d----~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----~~i~i~~v~a 148 (518) ..--.-.+.+.|.+.+.. .+ +.++..+..+...++......++.+.++.-|-+++..+++. +.|+|..|++ T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:32 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 998888899999875432 22 34456677777888999999999999999999999998873 5789999999 Q ss_pred CeeEEEEE--cCcEEE--EEEEEEEEe--------cCceEEE--------------E--------EEEEeecccc----- Q lcl|Aclame:pro 149 SQFWIDFK--NNEPFR--FNFFEEIPT--------SNKADIY--------------Y--------LVESREIKQW----- 189 (518) Q Consensus 149 d~~~P~~~--~g~~~~--~~f~~~~~~--------~~~~~~y--------------~--------~lE~he~~~~----- 189 (518) ..+++-+. ..++.+ .+|+..... +++..+. + ...+.....+ T Consensus 164 ~~v~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714) T protein:vir:32 164 NEVFWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQQN 243 (714) T ss_pred hheeeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccccc Confidence 99998642 222333 333332111 0000000 0 0000000000 Q ss_pred ---------eeeeeeccceEEEEEEEeccCCcccccccccc------------------ccccccccccccCcccceeec Q lcl|Aclame:pro 190 ---------DKEGKKLSGGFVTYSVIKIDGDKTTPISAERL------------------PEQITSYLHTNDIQLNHSVSI 242 (518) Q Consensus 190 ---------~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~t 242 (518) ...++...+-.....++...+++.+....... ......+.....+... -+. T Consensus 244 ~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~--~~~ 321 (714) T protein:vir:32 244 EWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVD--RPC 321 (714) T ss_pred ccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCccccc--CCC Confidence 00011111111122222322332221111000 0000000000000000 011 Q ss_pred CCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCC Q lcl|Aclame:pro 243 GLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMN 322 (518) Q Consensus 243 g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d 322 (518) ..+.-.|+|+|..+.-..-.+-|+| ...++++.++.+|...|+..+-+ +..++++.+..+...... -...-..++ T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~~-~~e~~arp~ 396 (714) T protein:vir:32 322 SAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDND-LMEQIERPD 396 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHHH-HHHhccCCC Confidence 1222234555443322222234554 78899999999999999998865 344455544443221100 000000011 Q ss_pred cchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKI 402 (518) Q Consensus 323 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~ 402 (518) -...++..-..+......++...+.--..++++.++.....|...+|++...+|..++..++.+|.++........ T Consensus 397 ----~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~~l 472 (714) T protein:vir:32 397 ----GIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGATTL 472 (714) T ss_pred ----CceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHHHH Confidence 1111111111222223445655544445788899999988999999999999998888888888888887777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-----------------------------CcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 403 EKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKA-----------------------------IMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 403 ~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~-----------------------------~~~~~~~v~v~f~D~i~~d 453 (518) ......+..+.+.+-+.+|.+...++...... .....++|.|+=..+.+.- T Consensus 473 ~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~t~ 552 (714) T protein:vir:32 473 AEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTPAF 552 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCchHH Confidence 77888888888888888888776554221100 0122445666655655565 Q ss_pred HHHHHHHHHHHHhCC-----CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSAL-----AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG-----~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++.++.++.+.++- .......|+.+ ++. -+++.+++|++-+....+++|. ..+.= T Consensus 553 r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~--d~p--~~~el~~~ir~~~~~~~~~~~~-----~~e~q 613 (714) T protein:vir:32 553 KAQLAQRMSEVIQGLPPQVQAVVLDLWVNLL--DVP--QKQEFVERIRAALGTPKSPDEM-----TPEEQ 613 (714) T ss_pred HHHHHHHHHHHHhhcCchhhhhHHHHHHHhc--CCC--CHHHHHHHHHHHcCCCCCcccc-----chhhH Confidence 677777777776431 11122223222 332 2444566666544332211111 00010 No 83 >protein:vir:9950 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859080;genbank:gi:32170835;genbank:GeneID:2653184 Probab=99.47 E-value=8.4e-12 Score=81.31 Aligned_cols=488 Identities=11% Similarity=0.043 Sum_probs=247.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC---CCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY---VPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~l~~~i~~~~A 77 (518) =++.--+.+.+.+||.- +.+.-+.|+.....+.+++. -.+|...- -.-..+..++.|+-+.+++... T Consensus 14 ~~~~~~~~~~~~~~~~~-----~~~~~~~~R~~a~~d~~fy~-----G~Qw~~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:99 14 NGATPRFSQRQLQALCS-----DIDSQPKWRDAANKACAYYD-----GDQLPPEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred cchhHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHhhc-----CCCCCHHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 11122233456777743 33344444432222222221 12332100 0112344578899999999999 Q ss_pred HHHcCCcceEEecccccc-ch----HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----CeEEEEEEcC Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGS-KD----ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN----GRPSISVHSS 148 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~-~d----~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----~~i~i~~v~a 148 (518) ..--.-.+.+.|.+.+.. .+ +.++..+..+...++......++.+.++.-|-+++..+++. +.|+|..|++ T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:99 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 998888899999875432 22 34456677777888999999999999999999999998873 5789999999 Q ss_pred CeeEEEEE--cCcEEE--EEEEEEEEe--------cCceEEE--------------E--------EEEEeecccc----- Q lcl|Aclame:pro 149 SQFWIDFK--NNEPFR--FNFFEEIPT--------SNKADIY--------------Y--------LVESREIKQW----- 189 (518) Q Consensus 149 d~~~P~~~--~g~~~~--~~f~~~~~~--------~~~~~~y--------------~--------~lE~he~~~~----- 189 (518) ..+++-+. ..++.+ .+|+..... +++..+. + ...+.....+ T Consensus 164 ~~v~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (714) T protein:vir:99 164 NEVFWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQQN 243 (714) T ss_pred hheeeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccccc Confidence 99998642 222333 333332111 0000000 0 0000000000 Q ss_pred ---------eeeeeeccceEEEEEEEeccCCcccccccccc------------------ccccccccccccCcccceeec Q lcl|Aclame:pro 190 ---------DKEGKKLSGGFVTYSVIKIDGDKTTPISAERL------------------PEQITSYLHTNDIQLNHSVSI 242 (518) Q Consensus 190 ---------~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~t 242 (518) ...++...+-.....++...+++.+....... ......+.....+... -+. T Consensus 244 ~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~--~~~ 321 (714) T protein:vir:99 244 EWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVD--RPC 321 (714) T ss_pred ccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCccccc--CCC Confidence 00011111111122222322332221111000 0000000000000000 011 Q ss_pred CCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCC Q lcl|Aclame:pro 243 GLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMN 322 (518) Q Consensus 243 g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d 322 (518) ..+.-.|+|+|..+.-..-.+-|+| ...++++.++.+|...|+..+-+ +..++++.+..+...... -...-..++ T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~~-~~e~~arp~ 396 (714) T protein:vir:99 322 SAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDND-LMEQIERPD 396 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHHH-HHHhccCCC Confidence 1222234555443322222234554 78899999999999999998865 344455544443221100 000000011 Q ss_pred cchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKI 402 (518) Q Consensus 323 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~ 402 (518) -...++..-..+......++...+.--..++++.++.....|...+|++...+|..++..++.+|.++........ T Consensus 397 ----~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~~l 472 (714) T protein:vir:99 397 ----GIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGATTL 472 (714) T ss_pred ----CceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHHHH Confidence 1111111111222223445655544445788899999988999999999999998888888888888887777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCC-----------------------------CcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 403 EKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKA-----------------------------IMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 403 ~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~-----------------------------~~~~~~~v~v~f~D~i~~d 453 (518) ......+..+.+.+-+.+|.+...++...... .....++|.|+=..+.+.- T Consensus 473 ~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~t~ 552 (714) T protein:vir:99 473 AEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTPAF 552 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCchHH Confidence 77888888888888888888776554221100 0122445666655655565 Q ss_pred HHHHHHHHHHHHhCC-----CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSAL-----AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG-----~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++.++.++.+.++- .......|+.+ ++. -+++.+++|++-+....+++|. ..+.= T Consensus 553 r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~--d~p--~~~el~~~ir~~~~~~~~~~~~-----~~e~q 613 (714) T protein:vir:99 553 KAQLAQRMSEVIQGLPPQVQAVVLDLWVNLL--DVP--QKQEFVERIRAALGTPKSPDEM-----TPEEQ 613 (714) T ss_pred HHHHHHHHHHHHhhcCchhhhhHHHHHHHhc--CCC--CHHHHHHHHHHHcCCCCCcccc-----chhhH Confidence 677777777776431 11122223222 332 2444566666544332211111 00010 No 84 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=99.42 E-value=2.2e-11 Score=78.99 Aligned_cols=424 Identities=11% Similarity=0.016 Sum_probs=206.3 Q ss_pred CCcCchH---------HHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHH Q lcl|Aclame:pro 1 MGVWSVM---------TRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNE 71 (518) Q Consensus 1 ~~~~~~~---------~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~ 71 (518) |.|...= |+.|+.=|.|...-++ .-.+|++.++...+ ..|..++ ++ ..=.|..+. T Consensus 1 m~V~~~hp~y~a~~~~W~~~rd~~~G~~~~r~--~g~~YLpk~~~E~~----~~Y~~rl---------~r-A~~~n~~~~ 64 (452) T protein:vir:94 1 MPIETKHPEYLAYENDWIDCRVASLGQREVKK--KGVRFLPKLSGQTD----DMYNAYK---------QR-ALFYSITSK 64 (452) T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcChHHHHc--CCcccCCCCCCCCH----HHHHHHH---------hh-ccCCchHHH Confidence 7766543 3333333444321100 01123333322211 1122211 11 122689999 Q ss_pred HHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE--CCeEEEEEEcCC Q lcl|Aclame:pro 72 IVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL--NGRPSISVHSSS 149 (518) Q Consensus 72 i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d--~~~i~i~~v~ad 149 (518) +++.++.++|.++|+++++. .+.. +..-.+-++++..++..+..++..|.+.+.+-+. +++|.|..+.|. T Consensus 65 t~~~~~G~vf~k~p~~~~p~-------~l~~-~~~D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~ 136 (452) T protein:vir:94 65 TLSALSGMVLDQPPVITHPD-------AMSK-YFEDQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTE 136 (452) T ss_pred HHHHHhchhhcCCceecccH-------HHHH-HHhcccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechh Confidence 99999999999999987642 2222 2223567889999999999999999999988775 467999999999 Q ss_pred eeEEEEE---cCcEEEEEEEEEEEe--cC------ceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccc Q lcl|Aclame:pro 150 QFWIDFK---NNEPFRFNFFEEIPT--SN------KADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISA 218 (518) Q Consensus 150 ~~~P~~~---~g~~~~~~f~~~~~~--~~------~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~ 218 (518) +++= |+ .|.++-+++-..... ++ ....|+.|+.- .|.|++ .+|+...+......+ T Consensus 137 ~Ii~-W~~~~~g~l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~-----------~g~~~v--~~~~~~~~~~~~~~~ 202 (452) T protein:vir:94 137 NILN-WEEDEDGRLLMVVLREFYTVRDTADRYVQNIRVRYRCLELV-----------DGLLQI--TVHETQDGKVWELAK 202 (452) T ss_pred hhcC-ccccccCCeeEEEEEEEEEEecCCCcccceeEEEEEEEEEe-----------CCeEEE--EEEEccCCceeeecc Confidence 9874 43 355555544332221 11 12234433221 133333 344433221110000 Q ss_pred cccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce Q lcl|Aclame:pro 219 ERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTK 298 (518) Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~r 298 (518) +. .... -.+....++|+++... ++ .. -.|.+-|.++..+--+.-..-|.+.+.+...... T Consensus 203 ------------~~--~~~~-~~~~l~~IP~v~~~~~--~~-~~--~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P 262 (452) T protein:vir:94 203 ------------TS--TIQN-VGVTMDYIPFFCITPS--GL-SM--TPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLP 262 (452) T ss_pred ------------ce--eecC-CCcccceeEEEEEcCC--CC-CC--CCCccchHHHHHHHHHHhcchhHHHHHHHHcccc Confidence 00 0000 0122333333333321 22 11 1366667666666555555555555666554433 Q ss_pred eeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccH-HHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 299 IAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRD-GSYRETMEYFAQKAVSKSGYNPA 377 (518) Q Consensus 299 i~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~-~~~~~~i~~~l~~i~~~~G~s~~ 377 (518) +.+-..+-+.. .+..+-+......+. ...+.+++|+-.. +++.+.++.+-+++. ..|. . T Consensus 263 ~l~~~g~~~~~----------------~i~iG~~~~~~lpe~-~~~~~yie~~g~~i~~~~~~l~~le~~m~-~~Ga--~ 322 (452) T protein:vir:94 263 TPWITGAESQS----------------TMHIGSTKAWVIPEV-AAKVGFLEFTGQGLQSLEKALSEKQAQLA-SLSA--R 322 (452) T ss_pred eeEeecCcCCC----------------ceEecccccccCCCC-CCcceEEccCchhHHHHHHHHHHHHHHHH-HHHH--H Confidence 33322221100 111111111111111 1225566666553 556666655554442 2221 2 Q ss_pred ccccCCccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHH Q lcl|Aclame:pro 378 TFNLGNREVKATEIW-SLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNE 456 (518) Q Consensus 378 tf~~d~~~~TAtEi~-s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~ 456 (518) .+.-.....|+||.+ .+.....+....+...++.++.++++.+.. +... . ......++-+|.+... ..+ T Consensus 323 ll~~~~~~~~s~ea~~~~~~~~~s~L~~~a~~~e~al~~~l~~~a~----w~g~--~--~~~~v~~n~dF~~~~~--~~~ 392 (452) T protein:vir:94 323 LIDNSTRGSEATETVKLRYMSETASLKSVTRAVEALLNKAYSCIMD----MESM--G--GTLNIKLNSAFLDSKL--TAA 392 (452) T ss_pred hhccCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HcCC--C--CceEEEeccccccccC--CHH Confidence 233233344444433 344445677778888888888777664433 2211 1 1112344455543222 345 Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 457 LSSTLNNMNSALAMSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 457 ~~~~~~~~~~aG~~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .++.+.++..+|.+|.+++++.+- .+.-+ .++|.++|.+|... +.|.+.|+ -+.|| T Consensus 393 ~~~al~~~~~~G~is~~t~~~~L~~~gvl~--~~~e~~~i~~E~~~---~~~~~~~~-~~~~~ 449 (452) T protein:vir:94 393 ELKAWVEAYLSGGISKEIYIHALKVGKVLP--PPGESMGVIPDPPA---PEPSPSNT-PPNPS 449 (452) T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHhCCCCC--CccCHHHHHHHhhc---cCcccCCC-CCCCc Confidence 677778899999999999877662 12221 12333455555322 23444442 34455 No 85 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.39 E-value=4.4e-12 Score=82.82 Aligned_cols=417 Identities=7% Similarity=-0.001 Sum_probs=197.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||-+.........||. -|....++++. .-+.+-.|++.||+..|+-+ T Consensus 26 ~g~~~~~d~~~~~~~~-~~~~~~~~~l~--------------------------------~lY~~~~l~r~iVd~~a~d~ 72 (461) T protein:vir:80 26 HGKANSRDKLTRQTPG-NGQKLDLKACE--------------------------------NLYASNSIAMNIVDIISEDM 72 (461) T ss_pred cCCcchhhhhhccccC-cccccCHHHHH--------------------------------HHHHhCCccchhhccchHHh Confidence 3433333333322321 11100111110 01113468999999999999 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcCcE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNEP 160 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~~ 160 (518) +.+...|+. +++...+.++..++.-+++..+.+++..+...|++++-+.+.+++.+ .++..-|+ .-+.. T Consensus 73 ~r~g~~i~~------~~~~~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~----~~~~~~pl-~~~~~ 141 (461) T protein:vir:80 73 VRAGWSLKT------DNKEMKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNRE----QADLSTAI-DPKTI 141 (461) T ss_pred hcCCeeeec------CCHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEEEeecCCcc----ccCccCCc-ccccc Confidence 998776653 23344556666676678899999999999999998888766554332 22223333 22222 Q ss_pred EEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccccee Q lcl|Aclame:pro 161 FRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSV 240 (518) Q Consensus 161 ~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (518) .++.++..+....-.. .++... -... ..|..++ |+-.+....... . +....+. .... T Consensus 142 ~~~~~l~~~~~~~i~~----~~~~~d----p~sp--~fg~P~~--y~i~~~~~~~~~--------~-~~~~~~~--~~~~ 198 (461) T protein:vir:80 142 KSIPYINTFNTQKVTQ----LYLNQD----MFSE--HFGEVEF--FEVNRVSQLGEE--------I-LSGTTAS--TSEQ 198 (461) T ss_pred cceeEEEeccccccch----hhhccc----CcCc--ccccceE--EEEecccccccc--------c-cccccCc--cceE Confidence 2333322111100000 000000 0000 0111111 111111000000 0 0000000 0000 Q ss_pred ecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccC Q lcl|Aclame:pro 241 SIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWS 320 (518) Q Consensus 241 ~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~ 320 (518) -+-++ .+.+.....++ .-+|+|++..+.+.+++++.+.-....-+...+..++--+.+ ....+.......-. T Consensus 199 iH~SR--ii~~~~~~~~~-----~~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~l-~~~~~~~~~~~~~~ 270 (461) T protein:vir:80 199 IHRSR--IIHEQGLRFEG-----ETKGRSIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDI-DALNKDDKANLTAM 270 (461) T ss_pred Ecccc--EEEecCCCCCc-----cccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecchH-HhhhchHHHHHHHH Confidence 01111 11222222222 235999999999999999998877665554433333322211 11111000000000 Q ss_pred CCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCcc-chHHHHHHHHHHH Q lcl|Aclame:pro 321 MNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNRE-VKATEIWSLQDAT 398 (518) Q Consensus 321 ~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~-~TAtEi~s~~~~t 398 (518) + ..++...+..- .+..+.++.++.++- .....++.+.+.+...++++.-.| |-..+. .|+. ...+-. T Consensus 271 ~----~~~~~~~g~~~--~d~~e~~e~~~~~ls--gl~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge---~D~~~y 339 (461) T protein:vir:80 271 L----DFMFRTEALAI--IKGDEQLTKESTNVS--GMKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQ---YDVMNY 339 (461) T ss_pred H----HHhcCCceEEE--EcCCcceEEEecCcC--CHHHHHHHHHHHHhhhhcCCeeeeecccCCccccch---HHHHHH Confidence 0 11111111111 122234676666544 356677788888999999987655 443322 2332 234456 Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH-------HHHHHhCCCC Q lcl|Aclame:pro 399 VRKIEKKKR-LIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST-------LNNMNSALAM 470 (518) Q Consensus 399 ~~t~~~~~~-~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~-------~~~~~~aG~~ 470 (518) |..+..+|. .++..|+.++..++...- .......+..++++|.|++....|++++++. +++++++|++ T Consensus 340 yd~i~~~qe~~l~p~le~l~~~i~~s~~----~~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~i 415 (461) T protein:vir:80 340 YARVSSIQENRLRPQLEYLTRLLMWASD----DCGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVL 415 (461) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccccCccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC Confidence 788888884 578888888877765321 1112223334689999999999998887654 7777888999 Q ss_pred CHHHHHHHHcC--CCCH------H-HHHHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 471 SVEEKVKLIHP--KWED------E-EIQAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 471 S~~~~v~~~~~--~~~e------e-ea~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) |.+++...+.. ..++ . ...+++++...|.. .+ -+++| T Consensus 416 s~~e~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------e~~~g 461 (461) T protein:vir:80 416 DPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKLVYDAY----AK------KNADG 461 (461) T ss_pred CHHHHHHHHHHhcCCCCCccCCCCCchhhhhhhhccccc----cc------cCCCC Confidence 98887654421 0111 1 11122222211111 11 12233 No 86 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=99.38 E-value=4.7e-11 Score=77.21 Aligned_cols=429 Identities=9% Similarity=-0.021 Sum_probs=199.7 Q ss_pred CCcCch-------------HHHHHHHHhcCCCChhhHHhhH-HHHhhccchhhhhhhhhhhhhhhccCCCCccccceecC Q lcl|Aclame:pro 1 MGVWSV-------------MTRFIKGWLNGKPNGSEPELIP-KYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNS 66 (518) Q Consensus 1 ~~~~~~-------------~~~~~~~w~~g~p~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 66 (518) -|=+++ -|+.|+.=|.|+.- .... .|++..+. +.....|..++. +-.=. T Consensus 5 ~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~----~~~r~~yl~~~~~---~~~e~~Y~~rl~----------rA~~~ 67 (491) T protein:vir:95 5 NGQGSGVKTKHREWLHYAPKWQKVRHALAGDLV----GYLRNVGLNEPDK---AYGEARQAEYEA----------GGIVY 67 (491) T ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCcch----hhcccCCCcCCCC---CCCHHHHHHHHh----------cccCC Confidence 222222 33334333444210 0000 11111110 000111222211 12236 Q ss_pred chHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHH-HhhcChHHHHHHHHHHHHhhCCEEEEEEEEC------- Q lcl|Aclame:pro 67 GTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEA-LRIDNFDSKSVKIVELAGGSGVSAVKINILN------- 138 (518) Q Consensus 67 ~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~v-l~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~------- 138 (518) |..+.+++.++.++|..+|+++++ +.++.+++.+ .+-++++..++..+..++..|.+.+-+-+.. T Consensus 68 n~~~~tl~~l~G~vfrk~p~~~~p-------~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~A 140 (491) T protein:vir:95 68 NFTRRTLSGMVGSVMRKEPEINIP-------KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAA 140 (491) T ss_pred ChHHHHHHHHhchhhcCCceeecc-------HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHH Confidence 899999999999999999999764 2233333322 3356888899999999999999998765531 Q ss_pred ------CeEEEEEEcCCeeEEEE---EcC--cEEEEEEEEEEEec---C-----ceEEEEEEEEeecccceeeeeeccce Q lcl|Aclame:pro 139 ------GRPSISVHSSSQFWIDF---KNN--EPFRFNFFEEIPTS---N-----KADIYYLVESREIKQWDKEGKKLSGG 199 (518) Q Consensus 139 ------~~i~i~~v~ad~~~P~~---~~g--~~~~~~f~~~~~~~---~-----~~~~y~~lE~he~~~~~~~~~~~~~~ 199 (518) -+|-|..+.|.+++=-- .+| +++-++|.+..... + ..+.|++|+.-++ + T Consensus 141 de~~~~~rPy~~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~------------g 208 (491) T protein:vir:95 141 EQNAGLLNPTIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDTD------------G 208 (491) T ss_pred HHHHhcCCcEEEEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeecCC------------C Confidence 15778888888876531 244 35556665543221 1 2345555544221 2 Q ss_pred EEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHH Q lcl|Aclame:pro 200 FVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLF 279 (518) Q Consensus 200 ~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~ 279 (518) ....++|+-+..........+. + +.. ...+....||+.+ -.. .|.... |.+-|-++ - T Consensus 209 ~~~~~v~r~~~~g~~~~~~~~~------~------~~~-g~~~l~~IPfv~~-~~~-~~~~~~----~~pPLl~L----A 265 (491) T protein:vir:95 209 NYRQRLFRFDAEGGAQEEVVEI------Y------PDL-GESLRGVIPFTFI-GAT-NNDATI----DDAPLLPL----A 265 (491) T ss_pred ceEEEEEEEcCCCcceeeeeee------e------ecC-CCcccCeeEEEEE-ecC-CCCCCC----CcCchHHH----H Confidence 2334556533222111000000 0 000 0011112233332 211 121111 33333322 2 Q ss_pred HHHHHHHHHHHH----HH-hccceeeech-hhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccccc Q lcl|Aclame:pro 280 AVDYFFTVYMRE----GE-KTKTKIAASE-RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFR 353 (518) Q Consensus 280 ~lD~~~s~~~~e----~~-~g~~ri~v~~-~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir 353 (518) .||..+=+..-+ +. .+.+..++.- +-+.......+......+.. ........++. ..++++... T Consensus 266 ~lni~Hy~~ssd~~~~l~~~~~P~l~~~G~d~~~~~~~~~~~~~~i~~g~--------~~~~~lP~~~~--~~~ie~~~~ 335 (491) T protein:vir:95 266 ELNIGHYRNSADNEESSFVVGQPTLFIYPGDNLTPQSFKEANPNGIKFGS--------RCGHNLGYGGS--AQLIQAGEN 335 (491) T ss_pred HHHHHHhhhhhHHHHHHHHcccceeeeecCcccCcchhhccCcceeEecC--------cCCcCCCCCCc--cceeecCcc Confidence 233333333222 23 3444444311 00000000000000001111 00111111222 233444332 Q ss_pred H--HHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 354 D--GSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNK 431 (518) Q Consensus 354 ~--~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~ 431 (518) . .+.+..+...|+.+... .+. .++++|||+...+.++..+....+...++.++.++++.+... .+. T Consensus 336 ~~~~~~l~~~e~qm~~~Ga~------l~~-~~~~~Ta~~~~~~~~~~~S~L~~~a~~~e~al~~~l~~~a~w----~G~- 403 (491) T protein:vir:95 336 NLARQNMLDKEQQAIQIGAQ------LIT-PSQQITAESARIQRGADTSVMATIARNVSQAYTDALRWVAMM----LGK- 403 (491) T ss_pred hHHHHHHHHHHHHHHHHHHH------hcc-CCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----cCC- Confidence 2 22233333333333222 222 345689999999999999999999999999998887655432 111 Q ss_pred cCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhc Q lcl|Aclame:pro 432 EKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAI 510 (518) Q Consensus 432 ~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~ 510 (518) +......+.++.+|..... | .+.++.+.++.++|.+|.+++++.+- .+.-+...++|.++|++|.. +.-.. T Consensus 404 -~~~~~v~i~~n~dF~~~~~-~-~~~~~all~~~~~G~is~~t~~~~L~~~~vl~~~~e~~~~~ie~~~~-----~~~~~ 475 (491) T protein:vir:95 404 -PEDSEVEFQLNMDFFLQPM-T-AQDRAAWMADINAGLLPATAYYAALRKAGVTDWTDEDILNAIEDAPL-----PSGAV 475 (491) T ss_pred -CCCCceEEEeecccccccC-C-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHHHHHHHHhcCC-----CCCcc Confidence 1111112345666765433 3 33577788889999999999887652 23444455677888876642 22222 Q ss_pred cCcCCCCC Q lcl|Aclame:pro 511 GGMETKGG 518 (518) Q Consensus 511 ~~~~~~gG 518 (518) +.--+++| T Consensus 476 ~~~~~~~~ 483 (491) T protein:vir:95 476 TQVAGEIP 483 (491) T ss_pred ccccccch Confidence 33334444 No 87 >protein:vir:8846 Length: 705 # NCBI annotation: putative portal protein # Family: family:all:1548 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775254;genbank:gi:27476052;genbank:GeneID:2700600 Probab=99.37 E-value=1.6e-11 Score=79.70 Aligned_cols=462 Identities=10% Similarity=-0.031 Sum_probs=199.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc-ccceecCchHHHHHHHH--- Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-HDKLMNSGTGNEIVVVA--- 76 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~l~~~i~~~~--- 76 (518) +.+.....+.-+.|+.|... ....+...+|. |+++.+.. .+.++..+.-...++.+ T Consensus 16 ~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~y~----------------g~~~~~~~~~~s~~~~~~v~~~v~~~~~~ 75 (705) T protein:vir:88 16 LRHLDQLVNDALDFNSSELS----KQRSEALKYYF----------------GEPFGNERPGKSGIVSRDVQETVDWIMPS 75 (705) T ss_pred HHHHHHHHHHHHhhhhhHHH----HHHHHHHHHHh----------------CCCCCcccCCCCccccHHHHHHHHHHHHH Confidence 23333333333445433211 01111112222 22222111 12334444444333333 Q ss_pred -HHHHcCCcceEEeccccccch---HHHHHHHHHH-HhhcChHHHHHHHHHHHHhhCCEEEEEEEEC------------- Q lcl|Aclame:pro 77 -AEYISGKPLSIDVTGVNGSKD---ENLTKQLKEA-LRIDNFDSKSVKIVELAGGSGVSAVKINILN------------- 138 (518) Q Consensus 77 -A~ll~~e~~~i~v~~~~~~~d---~~~~~~l~~v-l~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~------------- 138 (518) .+.+|+-..-+.+.+...+|. +..+++++.+ ...|+....+..++..++..|.+++|++|+. T Consensus 76 l~~~~~~~~~~~~~~p~~~~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~dal~~g~gi~kv~we~~~~~~~e~~~~~~ 155 (705) T protein:vir:88 76 LMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLS 155 (705) T ss_pred HHHhhcCCCceEEEeeCChhHHHHHHHHHHHHhHHHhhccchhHHHHHHHHHHhhcCCeEEEeccccccchhhhhhccCC Confidence 333455555666665443332 2334455554 4455666778899999999999999999943 Q ss_pred ------------------------------------CeEEEEEEcCCeeEEEEEcCcEEEEEEE--EE-EEecCceEE-E Q lcl|Aclame:pro 139 ------------------------------------GRPSISVHSSSQFWIDFKNNEPFRFNFF--EE-IPTSNKADI-Y 178 (518) Q Consensus 139 ------------------------------------~~i~i~~v~ad~~~P~~~~g~~~~~~f~--~~-~~~~~~~~~-y 178 (518) |+++|+.|++..|++.-+-..+.++.|+ +. .+..+-... | T Consensus 156 ~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~V~p~d~~~dp~a~~~~d~~~~~~~~~~t~~dl~~~g~ 235 (705) T protein:vir:88 156 EDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGV 235 (705) T ss_pred hhhhhhhhhhhhhhcccccccccceeeeEEeeeeecCceeeeeccHHHceecCCCCCcccCcEEEEEEeccHHHHHhhcC Confidence 5688899999999864211112222222 11 111110000 0 Q ss_pred -----EEEEEeecccce---------eee----------e-eccceEE-EEEEEeccCCccccccccccccccccccccc Q lcl|Aclame:pro 179 -----YLVESREIKQWD---------KEG----------K-KLSGGFV-TYSVIKIDGDKTTPISAERLPEQITSYLHTN 232 (518) Q Consensus 179 -----~~lE~he~~~~~---------~~~----------~-~~~~~~I-~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~ 232 (518) ..+..|+..... ... + ......| .|+.|-.-+....+. .. ..+..+. T Consensus 236 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~~~~~~~~~~~~~~~~r~v~~~E~y~~~d~~~d~~-----~~--~~~~~~~ 308 (705) T protein:vir:88 236 PEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGI-----SE--LRRILYV 308 (705) T ss_pred ChhHhhhhhcccccchhhhhhhccccccccccccccccccccCCceeEEEEEeeeEecccCCcc-----ee--eEEEEEe Confidence 001111100000 000 0 0000011 222221100000000 00 0000111 Q ss_pred cCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeeechhhhccCCC Q lcl|Aclame:pro 233 DIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRKKVN 311 (518) Q Consensus 233 ~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~-g~~ri~v~~~~l~~~~~ 311 (518) +...-. ++.-..+||+.+-+.+ .+++.+|.|+++.+.++++.+|..++++++-+.. +.++++|+++++..... T Consensus 309 g~~il~-~~~~~~~PF~~~~~~p-----~~~~~~G~g~~~~~~d~Q~~~n~~~~~~~d~~~~~~~~~~~~~~g~v~~~d~ 382 (705) T protein:vir:88 309 GDYIIS-NEPWDCRPFADLNAYR-----IAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDL 382 (705) T ss_pred Cccccc-cccCCCCCEEEeccee-----ecCccccCChHHHHhHHHHHHHHHHHHHHHHHHhccCCceeccccccCcccc Confidence 100000 1111245666653333 3466789999999999999999999999988865 77889998887643211 Q ss_pred CCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC----ccch Q lcl|Aclame:pro 312 KSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN----REVK 387 (518) Q Consensus 312 ~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~----~~~T 387 (518) ....+...++ +. + ...++.+.+.=-....+..++.+-..+...+|++.-..|.++ ...| T Consensus 383 -------~~~~pg~vv~--~~-----~---~~~i~~~~~~~~~~~~~~ll~~~~~~~~~~tGi~~~~~G~~~~~~~~~~T 445 (705) T protein:vir:88 383 -------LTNEAAGIVR--VK-----S---MNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQA 445 (705) T ss_pred -------cccCCCeeEE--ec-----C---CCccccccCCcCcHHHHHHHHHHHHHHHHhhCCchHHcCCCcccccchhh Confidence 0011111111 10 0 112444443333445666777777788899999998888763 2469 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccC----C--C------cCCceeeEEEeCCCCCCCH Q lcl|Aclame:pro 388 ATEIWSLQDATVRKIEKKKRLI-QNVYEQMLWDFLYLLTGGTNNKEK----A--I------MRDEIRVIIEFPDPMSVNL 454 (518) Q Consensus 388 AtEi~s~~~~t~~t~~~~~~~~-~~~l~~li~~il~l~~~~~~~~~~----~--~------~~~~~~v~v~f~D~i~~d~ 454 (518) ||+|......--.......+.+ +..++++++.++++...++....- + . .....++.++-+-+... . T Consensus 446 a~~i~~~~~~~~~r~~~~~r~~a~~~~~~l~~~~~~li~~~~~~~~~~ri~g~~v~v~~~~~~~~~~v~v~v~~~~~~-~ 524 (705) T protein:vir:88 446 AMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMN-K 524 (705) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeccchhccchHhhccCCceEEeeccccch-H Confidence 9988666655444455555556 457888888888887665432100 0 0 01122333333322222 2 Q ss_pred HHHHHHHHHH---HhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccC----CCCchhcc-----------CcCC- Q lcl|Aclame:pro 455 NELSSTLNNM---NSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGE----VPDPEAIG-----------GMET- 515 (518) Q Consensus 455 ~~~~~~~~~~---~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~----~~dp~~~~-----------~~~~- 515 (518) ++....++.+ .+...+.. .+.+-.+.....+.++++.+..+.-. ..+|...- .... T Consensus 525 eq~~a~l~~ll~~~q~l~~~~-----~~~~~~~~~~~~~~~~el~e~~~~k~~~~~~~~~~~~e~~~~~~~~~q~e~~~~ 599 (705) T protein:vir:88 525 DQQMLHLMRIWEMAQAVVGGG-----GLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPK 599 (705) T ss_pred HHHHHHHHHHHHHHHHhhccc-----chhhhcChHHHHHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHhhhhhhhhHH Confidence 2222111111 11100000 00011111111111111110000000 00000000 0000 Q ss_pred ----C-CC Q lcl|Aclame:pro 516 ----K-GG 518 (518) Q Consensus 516 ----~-gG 518 (518) + .. T Consensus 600 ~~~~~~q~ 607 (705) T protein:vir:88 600 PEDIKAQA 607 (705) T ss_pred HHHHHHHH Confidence 0 00 No 88 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.35 E-value=7.4e-11 Score=76.12 Aligned_cols=446 Identities=9% Similarity=0.007 Sum_probs=206.1 Q ss_pred CC---cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhc-cCCC--Ccc------------c-c Q lcl|Aclame:pro 1 MG---VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWA-QGYV--PTV------------H-D 61 (518) Q Consensus 1 ~~---~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~--~~~------------~-~ 61 (518) || ..+++-+..-+|-. |- .........+.|..... .....-|. ++.. +.. . . T Consensus 1 ~~r~~~~~~~~dr~i~~~~--~~--~~~~~~~~~~~y~aa~~-----~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRd 71 (505) T protein:vir:96 1 MKRAEKKPSLAQRMVNWAW--YR--YVEPQKNAARAFEAARR-----DRLGKAWLRRASRLSADEEIYADLASLVQRARE 71 (505) T ss_pred CCCCccccchhhcccchhh--hh--hHHHHHHhhhhcccccC-----CCccccccCCCCCCChHHHHHHHHHHHHHHHHH Confidence 54 23333333334421 10 00000111122221111 01111221 1110 000 0 0 Q ss_pred ceecCchHHHHHHHHHHHHcCC-cceEEec--cccccchHHHHHHHHHHHhh------------cChHHHHHHHHHHHHh Q lcl|Aclame:pro 62 KLMNSGTGNEIVVVAAEYISGK-PLSIDVT--GVNGSKDENLTKQLKEALRI------------DNFDSKSVKIVELAGG 126 (518) Q Consensus 62 ~~~~~~l~~~i~~~~A~ll~~e-~~~i~v~--~~~~~~d~~~~~~l~~vl~d------------n~f~~~~~~~~e~~~a 126 (518) -...-++++.+++.+++.+.+. -..+... ..+...++.+++.|+..+++ .+|+.....++...+. T Consensus 72 L~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~ 151 (505) T protein:vir:96 72 QSINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLAR 151 (505) T ss_pred HHhcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhh Confidence 1225678999999999999985 3333322 22223345555555444332 2377767777888888 Q ss_pred hCCEEEEEEEECCe---EEEEEEcCCeeEEEE----EcCc-EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccc Q lcl|Aclame:pro 127 SGVSAVKINILNGR---PSISVHSSSQFWIDF----KNNE-PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSG 198 (518) Q Consensus 127 ~G~~~~k~~~d~~~---i~i~~v~ad~~~P~~----~~g~-~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~ 198 (518) .|.++++..+..+. .+|..+.||.+--.. .+|. +...|-++ ..++- T Consensus 152 dGE~f~~~~~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d---~~Gr~----------------------- 205 (505) T protein:vir:96 152 DGEVLVREHRGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIELD---AWERP----------------------- 205 (505) T ss_pred CCceEEEEeecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEEC---CCCce----------------------- Confidence 89999888776543 588888888753210 1222 22222221 11121 Q ss_pred eEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHH Q lcl|Aclame:pro 199 GFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYL 278 (518) Q Consensus 199 ~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i 278 (518) +-|.+++...+...... ......+..++.+ -+.++..+ ..++-.-|+|.|+.++..+ T Consensus 206 --~aY~i~~~hPgd~~~~~-------~~~~~~~~rvpa~----------~vlH~f~~----~r~gQ~RGis~lapvl~~l 262 (505) T protein:vir:96 206 --VAYHLLVNHPGDNSYCY-------HYAGQTYERVPAD----------EIIHTFVP----WRPHQNRGIPWTHASMVEL 262 (505) T ss_pred --EEEEEeecCCCcccccc-------ccccccccccCHh----------Hhhhhhcc----cCCccccCcchHHHHHHHH Confidence 22333333322211000 0000011111111 11222111 1122334999999999999 Q ss_pred HHHHHHHHHHHHHHHh-ccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHH Q lcl|Aclame:pro 279 FAVDYFFTVYMREGEK-TKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSY 357 (518) Q Consensus 279 ~~lD~~~s~~~~e~~~-g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~ 357 (518) +.|+.-.+.-..--+. +--..|| +++....+. ...+.+......+.......-.....++.++|+-....| T Consensus 263 ~~l~~y~dael~~a~i~A~~a~fi-----~~~~~~~~~---~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~ 334 (505) T protein:vir:96 263 HHIGEYRKSEMIAAELGAKKVGFY-----EQDPEAYDQ---PPEDDQGEIVEEVEAGTYQLLPYGIRFKEHKIDHPHTNF 334 (505) T ss_pred HHHhHHHHHHHHHHHHhhhheeee-----ecCCccCCC---ccccccCccccccCCceeeecCCCCeeeeeCCCCCCCCH Confidence 9998766654443333 2233343 222111110 011111111111211111122233568889999888899 Q ss_pred HHHHHHHHHHHHHHhCCCccccccCCccc---hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccC Q lcl|Aclame:pro 358 RETMEYFAQKAVSKSGYNPATFNLGNREV---KATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEK 433 (518) Q Consensus 358 ~~~i~~~l~~i~~~~G~s~~tf~~d~~~~---TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~ 433 (518) ..-...+++.+...+|+|+..++-|-+.. ++.+...+..+.+. ..|..+. ..+..+.+..|+.+-. ..... T Consensus 335 ~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~---~~q~~~~~~~~~pi~~~~l~~a~l--~G~i~ 409 (505) T protein:vir:96 335 GAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYK---LLQFFVVTELLERVAGNLISMSLL--TQALP 409 (505) T ss_pred HHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--cCCcC Confidence 99999999999999999999997663332 34444344444443 3333333 3344444444433211 11111 Q ss_pred CCc-CCceeeEEEeCCC--CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHhccccCCCCch Q lcl|Aclame:pro 434 AIM-RDEIRVIIEFPDP--MSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWED--EEIQAEVKRIYLENAIGEVPDPE 508 (518) Q Consensus 434 ~~~-~~~~~v~v~f~D~--i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~e--eea~eev~rI~~E~~~~~~~dp~ 508 (518) .+. ..+.-..+.|--+ ...|+...++....++.+|++|.++.++..-.++.+ ++..+|.++++ |.+.....++. T Consensus 410 ~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~-~~Gl~~~~~~~ 488 (505) T protein:vir:96 410 LNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDVFDEIAWEEQLMR-DKGVNPTPPEQ 488 (505) T ss_pred CCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHH-HcCCCCCCCCC Confidence 110 0111134666544 456899999999999999999999999886333333 23333333333 33332111111 Q ss_pred hccCc---CCCCC Q lcl|Aclame:pro 509 AIGGM---ETKGG 518 (518) Q Consensus 509 ~~~~~---~~~gG 518 (518) ..... +...+ T Consensus 489 ~~~~~~~~~~~~~ 501 (505) T protein:vir:96 489 ESKDATTDEEDDS 501 (505) T ss_pred CCCCCCCCCCCCC Confidence 11000 01111 No 89 >protein:vir:108295 Length: 711 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552284;genbank:gi:160700609;genbank:GeneID:5758811 Probab=99.35 E-value=5.2e-12 Score=82.44 Aligned_cols=480 Identities=9% Similarity=-0.051 Sum_probs=233.3 Q ss_pred CCcCchHHH-----HHHHHhcCCCCh--hhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHH Q lcl|Aclame:pro 1 MGVWSVMTR-----FIKGWLNGKPNG--SEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIV 73 (518) Q Consensus 1 ~~~~~~~~~-----~~~~w~~g~p~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~ 73 (518) --+.+..+. .++.||.-.-+. .-.+..-+-...|.|+++.-..... -.-..+..++.|+-+.++ T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw~~~~~~~---------l~~~g~p~~~~N~i~~~v 90 (711) T protein:vir:10 20 VYAKNNDDDRALLATARERARDGATYWKDNWEAAEDDLKFLGGEQWPSQVRTE---------RELEQRPCLVNNVLPTFV 90 (711) T ss_pred hcccCcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCCCHHHHHH---------HHhcCCCcEEEcchHHHH Confidence 111121111 122333110000 0000011112222232221111110 011234467889999999 Q ss_pred HHHHHHHcCCcceEEecccc---------------------ccchHH----HHHHHHHHHhhcChHHHHHHHHHHHHhhC Q lcl|Aclame:pro 74 VVAAEYISGKPLSIDVTGVN---------------------GSKDEN----LTKQLKEALRIDNFDSKSVKIVELAGGSG 128 (518) Q Consensus 74 ~~~A~ll~~e~~~i~v~~~~---------------------~~~d~~----~~~~l~~vl~dn~f~~~~~~~~e~~~a~G 128 (518) +.....--+..+.+.|...+ ..+|.. ++..+..+.+.|+......++..+++..| T Consensus 91 ~~v~g~~~~nr~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~af~d~~~~G 170 (711) T protein:vir:10 91 DQVLGDQRQNRPAIKVSSTEVTRVPDAESGEDTTLKISNVAGKNDYELAEVFTGLIKNIEYNCDAETEYDIAFQGAVESG 170 (711) T ss_pred HHHhhhHhhCCcceEEecccccchhhhhhhhccccccccCCChhHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhcC Confidence 99999888888899888642 223334 44455667778888888899999999999 Q ss_pred CEEEEEEEE-------CCeEEEEEE-cCCeeEEEEE--cCcEE--EEEEEEEEEecC-ceEEE----------------- Q lcl|Aclame:pro 129 VSAVKINIL-------NGRPSISVH-SSSQFWIDFK--NNEPF--RFNFFEEIPTSN-KADIY----------------- 178 (518) Q Consensus 129 ~~~~k~~~d-------~~~i~i~~v-~ad~~~P~~~--~g~~~--~~~f~~~~~~~~-~~~~y----------------- 178 (518) -+++++++| ++.++|..| ++..+++-+. .-++. ..+|......-+ -+..| T Consensus 171 ~G~~ev~~d~~~~d~~~~e~~i~~v~~p~~v~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~yp~~a~~~~~~~~~~~~~ 250 (711) T protein:vir:10 171 MGYLRVRSDYLADDSFEQDLIIEAIQNQFSVTIDPDAKKRDRSDMNWCLIDDTMSKEKFKALYPDATAEPVYEDSVADYD 250 (711) T ss_pred cceEEEEecccCCCCCCCCeEEeeecChhheeeCccccccChhhhcceeeeecCCHHHHHHhCCchhhhhhhcccccccC Confidence 999999865 267888777 5877776432 22333 334433211100 00000 Q ss_pred --------EEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc--------c------------cccccc Q lcl|Aclame:pro 179 --------YLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE--------Q------------ITSYLH 230 (518) Q Consensus 179 --------~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~--------~------------~~~~~~ 230 (518) ++.|+.... .....++...++............ . .-.+.. T Consensus 251 ~~~~~~~vrv~E~~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~~ 318 (711) T protein:vir:10 251 TWFTEKSVRVSEYFTRE------------PVIREIALLSDGRSFWLDALEDIVDELLEAGISIVRTRKVKTFKTYWRKIT 318 (711) T ss_pred cccCcceeeEEEEEeee------------eeeeEEEeecCCceeccCcchhHHHHHHhcCchhhhhhhhceeeEEEEEEe Confidence 111111100 011122222222111111000000 0 000000 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~-g~~ri~v~~~~l~~~ 309 (518) ...+.+...-..+...||++|+... .....+..+.|++.+++|.++.+|...|++++-+-. ++.+++++++.+... T Consensus 319 G~~~L~~~~p~~~~~~P~vp~~g~r---~~~d~~~~~~G~vr~~~d~Qr~~N~~~s~~~~~l~~~~~~~~~~~~gai~~~ 395 (711) T protein:vir:10 319 GANVLEGPVEIPSTTIPVIPVWGKS---LIIKKKEIFRSIIRHSKDAQRMANYWDSAATETVALAPKAPFIGSEGNVEGR 395 (711) T ss_pred cceeecCCCCCCCCcccEEEEeeee---eccccccccchhhhhhhhhHHHHHHHHHHHHHHHHhcCCCceeecCcccCCh Confidence 1111111000112223444332211 112244445667999999999999999999999865 777999988887531 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHH Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKAT 389 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAt 389 (518) .. .-.. -......+..++. +..+...++..++.---.+++..++.....+...+|++...+|..++..|+. T Consensus 396 ~~-~~~e----~~~~~~~vi~~~~----~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~i~~~tGi~~~~~G~~~n~~Sg~ 466 (711) T protein:vir:10 396 ED-EWEQ----ANTKNFSLLTYIP----QYQGDPGPRRQPPAAVPAAELTLGQNSVEKIKSTMGMYDASLGAMGNETSGR 466 (711) T ss_pred HH-HHHh----ccccCCCeeEecc----cccCcCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCChHHcCCCccchHHH Confidence 11 0000 0011111222221 1222335666654444578888999998899999999999999988888999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC----C---------------------------CcCC Q lcl|Aclame:pro 390 EIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEK----A---------------------------IMRD 438 (518) Q Consensus 390 Ei~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~----~---------------------------~~~~ 438 (518) .|.+...............+..+++.+.+.+|.+...++..... + .... T Consensus 467 ai~~~q~qg~~~l~~~~dn~~~~~~~~g~~ll~li~~~~~~er~~rI~ged~~~~~v~ln~~~~~~~~G~~~~~nDi~~g 546 (711) T protein:vir:10 467 AIIARQRQGDRGSFAFIDNLTKSIRRVGKILVEMIPHIYDTERVVRLKFPDETEDFVKLNEQIFDEESGEWVTIHDLNVQ 546 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCcceEEecccccccccccceeeecccee Confidence 99999988777777888888888888888888887766521100 0 0112 Q ss_pred ceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHH-----HHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCc Q lcl|Aclame:pro 439 EIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEE-----KVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM 513 (518) Q Consensus 439 ~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~-----~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~ 513 (518) .++|.|+=..+...-.++.+..++.+. +.++.-. .+..+.+.-.-++..+ +|+.-+....+..|...... T Consensus 547 ~~Dv~i~~~p~~~s~r~~~~~~l~ql~--~~~p~~~~~~~~~il~~~d~p~~~el~e---~lr~~~~~~~~~~~~~~~~q 621 (711) T protein:vir:10 547 KYDVVVTTGPAFATQRIEAAEAMIQFA--QAVPSAAAVMADLIAQNMDWPGADVIAE---RLKKIVPPNVLSKDEREAIE 621 (711) T ss_pred eeEEEEeeccCchhHHHHHHHHHHHHH--hhcchhhhHHHHHHHHhcCCCCHHHHHH---HHHhhcCcccCcchhhhHHH Confidence 334455444444444455555555443 2222111 1112111112233322 33322221111111000000 Q ss_pred -----------------CCCCC Q lcl|Aclame:pro 514 -----------------ETKGG 518 (518) Q Consensus 514 -----------------~~~gG 518 (518) --.++ T Consensus 622 q~~~e~qq~~~~~q~~~~~~q~ 643 (711) T protein:vir:10 622 EDMPEQTEPTPEQQVEMAKSQA 643 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHH Confidence 00000 No 90 >protein:vir:104437 Length: 714 # NCBI annotation: putative phage portal protein # Family: family:all:487 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794061;genbank:gi:116222006;genbank:GeneID:4397502 Probab=99.33 E-value=1e-10 Score=75.37 Aligned_cols=486 Identities=11% Similarity=0.006 Sum_probs=234.7 Q ss_pred CCcCc------hHHHHH-HHHhcCCCChhhHHhhHHHH-------hhccchhhhhhhhhhhhhhhccCCCCccccceecC Q lcl|Aclame:pro 1 MGVWS------VMTRFI-KGWLNGKPNGSEPELIPKYL-------PLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNS 66 (518) Q Consensus 1 ~~~~~------~~~~~~-~~w~~g~p~~~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 66 (518) ++..- .+.... ..|+ .+.+.-+.|+ ..|.+++|.-...... .-..+..++. T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~r~~a~~d~~fy~G~Qw~~~~~~~l---------~~~g~p~~~~ 72 (714) T protein:vir:10 8 TAMKNDHGSTPRFSQRQLLSLC------SDIDSQPLWRDAANKACAYYDGDQLAPEVIQVL---------KDRGQPMTIH 72 (714) T ss_pred ccCCCcchhhhhhhHHHHHHHH------HHHhhhHHHHHHHHHHHHhhcCCCCCHHHHHHH---------HhcCCCcEEe Confidence 11111 111111 2221 1112222222 2333332211111100 1123445788 Q ss_pred chHHHHHHHHHHHHcCCcceEEeccccccc-h----HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC--- Q lcl|Aclame:pro 67 GTGNEIVVVAAEYISGKPLSIDVTGVNGSK-D----ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN--- 138 (518) Q Consensus 67 ~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~-d----~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~--- 138 (518) |+-+.+++.....--.-.+.+.|...+..+ + +.++..+..+...++......++...++.-|-++++.+++. T Consensus 73 N~i~~~v~~v~g~~~~nr~~~~v~pr~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~d~d~~ 152 (714) T protein:vir:10 73 NLIAPTVDGVLGMEAKTRTDLIVMSDDPNDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSEPF 152 (714) T ss_pred ccHHHHHHHHHHHHHhCCcceEEecCCCChhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcccceEEeeeccCCC Confidence 999999999999988888999998754332 2 34555667777788999999999999999999999999873 Q ss_pred -CeEEEEEEcCCeeEEEEE--cCcEEEE--EEEEEEEe--------cCce------------------------EEEEEE Q lcl|Aclame:pro 139 -GRPSISVHSSSQFWIDFK--NNEPFRF--NFFEEIPT--------SNKA------------------------DIYYLV 181 (518) Q Consensus 139 -~~i~i~~v~ad~~~P~~~--~g~~~~~--~f~~~~~~--------~~~~------------------------~~y~~l 181 (518) ++|+|..|++..+++-+. ..++.++ +|...... +++. ..+.-. T Consensus 153 ~~~i~i~~v~p~~v~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fp~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (714) T protein:vir:10 153 GPEFKVSTVSRNEVFWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAW 232 (714) T ss_pred CCCeEEEecChhheeeccccccCChhhhhhhhhhccCCHHHHHHhcCCchhhhhccchhhcCcccchhhhhhcccccccc Confidence 579999999999988642 1222222 22211100 0000 000000 Q ss_pred EEee--------cc-c---ceeeeeeccceEEEEEEEeccCCccccccccccccccccccc--------------cccCc Q lcl|Aclame:pro 182 ESRE--------IK-Q---WDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH--------------TNDIQ 235 (518) Q Consensus 182 E~he--------~~-~---~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~--------------~~~~~ 235 (518) +.|. |. . .....+...+-.....++...++..+....... ..+..+.. +.-.. T Consensus 233 ~~~~~~~~~~~~~~~~~~~rV~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~-~~~~~~~~g~~~~~~~~~~rv~~~~~~ 311 (714) T protein:vir:10 233 EEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNL-MQAVAVASGRVQVKVGRVSRIREAWFV 311 (714) T ss_pred hhhcccccccccccccCcceEEEEEEEEeEEEEEEeecCCCCCeeeeCccCH-HHHHHHHhccceecccceeeEEEEEEe Confidence 0000 00 0 000011111111112222222222211110000 00000000 00000 Q ss_pred ccceeecC---CCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCC Q lcl|Aclame:pro 236 LNHSVSIG---LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNK 312 (518) Q Consensus 236 ~~~~~~tg---~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~ 312 (518) ..+++.-+ .+.-.|+|+|..+.-....+.|+ +...++++.++.+|...|+..+-+ +..++++.+..+..... T Consensus 312 g~~~L~~~~~p~p~~~fp~vP~~g~~~~~~g~~~--G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~gav~~~d~- 386 (714) T protein:vir:10 312 GPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPY--GLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDN- 386 (714) T ss_pred cchhhhcCCCCCCCCceeeEEecceeeeccCccc--eehhhhhhHHHHHHHHHHHHHHHH--hCCceeeccccccccHH- Confidence 00111111 12223555554332222223344 578899999999999999998865 34456665544322110 Q ss_pred CccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHH Q lcl|Aclame:pro 313 STDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIW 392 (518) Q Consensus 313 ~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~ 392 (518) .....-..++. ...++.....+......++..++.=--..++..++.....|...+|++...+|..++..++.+|. T Consensus 387 ~~~e~~~rp~~----vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAI~ 462 (714) T protein:vir:10 387 DLMEQLERPDG----IIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAIS 462 (714) T ss_pred HHHHhccCCCC----eEEecccccccCCccccccccCCCCCcHHHHHHHHHHHHHHHHhhCCCHHHcCCCcchhHHHHHH Confidence 00000000110 11111111122222344565553323457889999999999999999999999888888888898 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCc-----------------------------CCceeeE Q lcl|Aclame:pro 393 SLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIM-----------------------------RDEIRVI 443 (518) Q Consensus 393 s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~-----------------------------~~~~~v~ 443 (518) ++......+.......+..+.+.+.+.+|.+...++........ ...++|+ T Consensus 463 ~r~~qg~~~l~~~~dnl~~~~~~~g~~ll~li~~~~~~~rv~RI~~e~~~~~~~~~~~~n~~~~~~~~~nDi~~~~~dv~ 542 (714) T protein:vir:10 463 NLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIA 542 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcccceeEeeccccCCccccccceeeeEEEE Confidence 88887777777788888888888888888887665422110000 0123344 Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCC-----CCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 444 IEFPDPMSVNLNELSSTLNNMNSAL-----AMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 444 v~f~D~i~~d~~~~~~~~~~~~~aG-----~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) |+=..+.+.-.++.++.++.+..+. .......++.+ ++. -+++.+++|++-.....++++.. ...... T Consensus 543 i~~~p~~~s~r~~~~~~l~ql~~~~~p~~~~~~~~~~le~~--d~p--~~~ei~~~ir~~~~~~~~~~~~~---~e~q~~ 615 (714) T protein:vir:10 543 LAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLL--DVP--QKQEFVERIRAALGTPKSPDEMT---PEEQEV 615 (714) T ss_pred EeeccCcHHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhc--CCc--CHHHHHHHHHHHcCCCCCccccC---cchhHH Confidence 4434444444566666666665431 11112223222 232 23445556655443322111110 011111 No 91 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.29 E-value=1.7e-10 Score=74.16 Aligned_cols=448 Identities=10% Similarity=0.035 Sum_probs=202.2 Q ss_pred CCcCc-hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhh----hhh-hhhhhhhhccCCCCccccceecCchHHHHHH Q lcl|Aclame:pro 1 MGVWS-VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKE----WSK-DSYLTSLWAQGYVPTVHDKLMNSGTGNEIVV 74 (518) Q Consensus 1 ~~~~~-~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~----~~~-~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~ 74 (518) ||+-. .-.+...++|+|-... -.++..|.+...+.... +.. ....+.+ ...-++++.+++ T Consensus 7 ~~~~~~~~~~~~~~~~~~a~~~--~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl------------~rNn~~a~~av~ 72 (530) T protein:vir:38 7 VGPDGKTSLREYAGYHGGGGGF--GGQLRGWNPPSESADAALLPNYSRGNARADDL------------VRNNGYAANAVQ 72 (530) T ss_pred ecCccccchHHHhhhhcccCCC--CCcccccccCCCCHHHHHHHHHHHHHHHHHHH------------HhcChHHHHHHH Confidence 33221 1122333333322110 00111111100000000 000 0001111 123468999999 Q ss_pred HHHHHHcCCcceEEec------cccccchHHHHHHHHHHHh----h----------cChHHHHHHHHHHHHhhCCEEEEE Q lcl|Aclame:pro 75 VAAEYISGKPLSIDVT------GVNGSKDENLTKQLKEALR----I----------DNFDSKSVKIVELAGGSGVSAVKI 134 (518) Q Consensus 75 ~~A~ll~~e~~~i~v~------~~~~~~d~~~~~~l~~vl~----d----------n~f~~~~~~~~e~~~a~G~~~~k~ 134 (518) .+++.|.+.-.++... +.+...++.+++.++..++ + .+|+....-++...+..|.++++. T Consensus 73 ~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~ 152 (530) T protein:vir:38 73 LHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQA 152 (530) T ss_pred HHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEe Confidence 9999999985544432 1122234455555555443 1 257777777778888899999998 Q ss_pred EEECC-----eEEEEEEcCCeeE-EE-EEcC-cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEE Q lcl|Aclame:pro 135 NILNG-----RPSISVHSSSQFW-ID-FKNN-EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVI 206 (518) Q Consensus 135 ~~d~~-----~i~i~~v~ad~~~-P~-~~~g-~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly 206 (518) .+... ..++..+.||.+- |. ..+| .+...|-++. .++- +-|.++ T Consensus 153 ~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~---~Gr~-------------------------~aY~i~ 204 (530) T protein:vir:38 153 TWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKIND---SGAA-------------------------LGYYVS 204 (530) T ss_pred eeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEECC---CCce-------------------------EEEEEe Confidence 87643 2688889888753 11 1122 2333332211 1121 122222 Q ss_pred eccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 207 KIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFT 286 (518) Q Consensus 207 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s 286 (518) +........ ..+..++. ....+..-+.|+..+ ..++-.-|+|.|+.++..++.|+.-.+ T Consensus 205 ~~~~~~~~~-------------~~~~~~~~----~~~v~a~~vlH~f~~----~r~gQ~RGis~lapvl~~l~~l~~y~d 263 (530) T protein:vir:38 205 DDGYPGWMA-------------QNWTYIPR----ELPGGRPSFIHVFEP----MEDGQTRGANAFYSVMEQMKMLDTLQN 263 (530) T ss_pred eccCCCccc-------------cccceeee----eeccChhHeEeeccc----cCCCcccCCchHHHHHHHHHHHhHHHH Confidence 221100000 00111100 011222233443332 122334599999999999999987655 Q ss_pred HHHHHHHh-ccceeeechhhhccCCCCC-------ccc-ccc-CCCcchhhe-----eeecCCcCCCCCCCccceEeccc Q lcl|Aclame:pro 287 VYMREGEK-TKTKIAASERMFRKKVNKS-------TDK-EEW-SMNVDEDYF-----MQFKGTLDAGAKLNDMIQFMQGD 351 (518) Q Consensus 287 ~~~~e~~~-g~~ri~v~~~~l~~~~~~~-------~~~-~~~-~~d~d~~~~-----~~~~~~~~~~~~~~~~i~~~~~~ 351 (518) .-..--+. +--..||-... .....+. ... ... .+.....-+ ..+.......-.....|+.++|. T Consensus 264 ael~~a~i~A~~a~fi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~ 342 (530) T protein:vir:38 264 TQLQSAIVKAMYAATIESEL-DTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQ 342 (530) T ss_pred HHHHHHHHhhhheeeeeccC-CccccccccccCCcccccccccccchhhhhcccccceeccCceeeecCCCCeeeeeCCC Confidence 54333232 22233332111 1000000 000 000 000000000 00111111111223458889999 Q ss_pred ccHHHHHHHHHHHHHHHHHHhCCCccccccCCccc---hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh Q lcl|Aclame:pro 352 FRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV---KATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGG 427 (518) Q Consensus 352 ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~---TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~ 427 (518) -....|....+.+++.|...+|+|+..|+-|-+.. ++.....+..+.+ ...|..+.. .+..+....|+.+ + T Consensus 343 ~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~---~~~q~~~~~~~~~pi~~~wl~~a--v 417 (530) T protein:vir:38 343 DTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYF---MGRRKFVASRQACQMFLCWLEEA--I 417 (530) T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHH--H Confidence 88888999999999999999999999997663332 3444444444444 334443332 3333333333321 1 Q ss_pred hccccC---CCcCCc-----eeeEEEe--CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHH Q lcl|Aclame:pro 428 TNNKEK---AIMRDE-----IRVIIEF--PDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWED--EEIQAEVKRI 495 (518) Q Consensus 428 ~~~~~~---~~~~~~-----~~v~v~f--~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~e--eea~eev~rI 495 (518) ...... +...+. .-..+.| .--...|+...++....++.+|+.|.++.++++-.+|.+ ++..+|.+++ T Consensus 418 ~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~ 497 (530) T protein:vir:38 418 VRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRESMER 497 (530) T ss_pred HcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHH Confidence 111111 111010 0123445 344567899999999999999999999999887434433 2333333333 Q ss_pred HHhccccCCCCch-------hccCcCCCCC Q lcl|Aclame:pro 496 YLENAIGEVPDPE-------AIGGMETKGG 518 (518) Q Consensus 496 ~~E~~~~~~~dp~-------~~~~~~~~gG 518 (518) ++ .+...+.++. ....-+...| T Consensus 498 ~~-~Gl~~~~~~~~~~~~~~~~~~~~~~d~ 526 (530) T protein:vir:38 498 RA-AGLNPPAWAAAAFEAGVKKSNEEEQDG 526 (530) T ss_pred HH-cCCCCCCCcccccCCCCCCCCCCCCCC Confidence 32 2222111111 1111111112 No 92 >protein:vir:105619 Length: 772 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164304;genbank:gi:56692922;genbank:GeneID:3197230 Probab=99.27 E-value=7.5e-11 Score=76.09 Aligned_cols=494 Identities=9% Similarity=-0.017 Sum_probs=239.9 Q ss_pred chHHHHHHHHhcCCCChhhHHh----hHHHHhhccchhhhhhhhhh------hhhhhccCCC---CccccceecCchHHH Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPEL----IPKYLPLVPDNQKEWSKDSY------LTSLWAQGYV---PTVHDKLMNSGTGNE 71 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~----~~~~~~~~~~~~~~~~~~~~------~~~~w~~~~~---~~~~~~~~~~~l~~~ 71 (518) |-||.-++....|.|+...... +..+..- .+.+.+|+.... .-..|..... .-+.+-.++.|+-+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~r~~a~~d~~fy~G~QW~~~~~~~l~~~g~p~~~~N~i~~ 79 (772) T protein:vir:10 1 MQITENDRQYLNGLPPAGDTPLTVDEYADINYE-IEDQPAWRAVADKEMDYADGNQLDTELLRRQQALGIPPAVEDLIGP 79 (772) T ss_pred CCcchhhHHhhccCCcccccccCHHHHHHHHHH-HhccHHHHHHHHHHHHhhcCCCCCHHHHHHHHhcCCCcEEEcchHH Confidence 5566666666666665433221 1111111 122333432211 1123321100 112344578999999 Q ss_pred HHHHHHHHHcCCcceEEeccccccchHH----HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----CeEEE Q lcl|Aclame:pro 72 IVVVAAEYISGKPLSIDVTGVNGSKDEN----LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN----GRPSI 143 (518) Q Consensus 72 i~~~~A~ll~~e~~~i~v~~~~~~~d~~----~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----~~i~i 143 (518) +++.....--.-.+.+.|...+...|+. ++..+..+.+.+++.....++...++..|-+++..+++. +.|+| T Consensus 80 ~v~~v~g~~~~nr~d~~v~Pr~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~Gw~e~~~~~d~~~~~i~i 159 (772) T protein:vir:10 80 ALLSLQGYEAVTRTDWRVTPNGDVGGQEVADALNYRLNTAERQSGADRACSEAFRPQIACGIGWVEVSRESDPFKFPYRC 159 (772) T ss_pred HHHHHHHHHHhcCcceEEecCCCchHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhhcCceeEEeccccCCCCCCeEE Confidence 9999999988889999998865434444 444566677788999999999999999999999988864 46899 Q ss_pred EEEcCCeeEEEEEc-CcEEEE--EEEEEEEe--------cC------------------ce----------EEEE----- Q lcl|Aclame:pro 144 SVHSSSQFWIDFKN-NEPFRF--NFFEEIPT--------SN------------------KA----------DIYY----- 179 (518) Q Consensus 144 ~~v~ad~~~P~~~~-g~~~~~--~f~~~~~~--------~~------------------~~----------~~y~----- 179 (518) .+|++..+|.-++. .++.+| +|...... ++ .. .+|. T Consensus 160 ~~v~p~~v~~Dp~a~~D~sDar~~~~~~~~~~d~~~~~fp~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (772) T protein:vir:10 160 RPIRRDEIHWDMKCGDDWEACRFLRRQRWLSPDRIALVFPEHAELIGMVGKYGSTWWGQPDLGMMEGGTSTGLHNAWNEA 239 (772) T ss_pred EeeCcccceecCCCCCCHHHhhhhhhhccCCHHHHHHhCCCchhHHHhhhhhcccccCcccccccccccccccccccchh Confidence 99999998886532 233332 33111000 00 00 0000 Q ss_pred ----EEEEeecc---cceeeeeeccceEEEEEEEeccCCcccccccccccc-------------ccccccccccCcccce Q lcl|Aclame:pro 180 ----LVESREIK---QWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE-------------QITSYLHTNDIQLNHS 239 (518) Q Consensus 180 ----~lE~he~~---~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 239 (518) ..+.+-+. .....++...+-...+..+...+++.+......... .......+.-....++ T Consensus 240 ~~~~~~~~~~~~~~~~rVrv~E~w~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~~~~~~~~~rv~~~~~~g~~~ 319 (772) T protein:vir:10 240 RAWTVQEDHWYNPTSKEICLVELWYRRWVQVHVLKSPDGRVVEYDPNNLAHNIALASGRISPKKVTVSRVRRSYWLGPHC 319 (772) T ss_pred hccccccccccccCCceEEEEEEeeeeeeeeeeeccCCCceEeeCcccHHHHHHHhhcccchheeeeeEEEEEEEeccee Confidence 00000000 000011111111122223333333222111000000 0000000000000111 Q ss_pred eecC---CCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccc Q lcl|Aclame:pro 240 VSIG---LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDK 316 (518) Q Consensus 240 ~~tg---~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~ 316 (518) +..+ .+.-.|.|+|..+.-....+-|+ +.+.++++..+.+|...|+..|-+-.. ++...+..++.... .- . T Consensus 320 L~~~~~p~~~~~fP~vP~~g~r~~~~g~~~--G~vr~~kd~Qr~~N~~~S~~~~~l~~~--~~~~~~gav~~~d~-~~-~ 393 (772) T protein:vir:10 320 LHDGPTPYTHRHFPYVPFFGFREDATGIPY--GYVRGMKYAQDSLNSGVSKLRWGMSVA--RVERTKGAVAMTDA-QF-R 393 (772) T ss_pred eccCCCCCCCCccceEEEeeeEeccCCccc--chhhhhhhHHHHHHHHHHHHHHHHhcc--cccccCCCccchhH-HH-H Confidence 1111 11112334443222111122344 588999999999999999999976543 35544444432110 00 0 Q ss_pred cccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHH Q lcl|Aclame:pro 317 EEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQD 396 (518) Q Consensus 317 ~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~ 396 (518) ..+. .++ ....++. ....+....++..++.---.++++.++.....|...+|++...+|..+...++.+|.++.. T Consensus 394 e~~a-rp~--~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGv~~~~lG~~~na~SGvAi~~rq~ 468 (772) T protein:vir:10 394 RQIA-RPD--ADIVLDE--NHMAKPGARFDVKRDYTLTDQHFQMLQDNRATIERVSNITAGFQGRKGTATSGIQEQQQIE 468 (772) T ss_pred Hhcc-CCC--CeEEeCC--ccccCCCCCccccCCccccHHHHHHHHHHHHHHHHHhCCCHHHcCCCcchhhHHHHHHHHH Confidence 0000 000 1111211 1111112335555543334688899999999999999999999998877788888988888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC---------------------------------cCCceeeE Q lcl|Aclame:pro 397 ATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAI---------------------------------MRDEIRVI 443 (518) Q Consensus 397 ~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~---------------------------------~~~~~~v~ 443 (518) ............+..+.+.+-+.+|.+...++....... ....|+|. T Consensus 469 qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~y~~er~~RI~~~d~~~~~~~v~in~~~~d~~tg~~~~~NDi~~g~yDv~ 548 (772) T protein:vir:10 469 QSNQSIGRIMDNFRAGRTLVGELLLAMIVEDIGQERTEVVIEGDAVTADRVVVLNEPQRDPQTGAAYLSNDLLRTRIKVA 548 (772) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCCCCceEEeccceecccccccceeccceeeeEEEE Confidence 777777788888888888888888888776642211000 11123333 Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHH-----cCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 444 IEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLI-----HPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 444 v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~-----~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) |+=....+.-.++.++.+..+.. .+++......+ +.++. -+++.+++|++-+.. ++|...-. ..... T Consensus 549 i~~~p~~~t~r~~~~~~m~ql~~--~~~P~~~~~~~~~~le~~D~p--~~~ei~~~ir~~~~~---~~peq~~~-~~~q~ 620 (772) T protein:vir:10 549 LEDVPSTNSYRGQQLNAMSEAVK--SMPPQYQAAVLPFLVSLMDVP--FKRDVVEAIRAVDQQ---QTPEQIQQ-QIDQA 620 (772) T ss_pred eeccccchHHHHHHHHHHHHHHh--ccChhHHHHHHHHHHhhcCCC--ChHHHHHHHHHHhcc---CChHHHHH-HHHHH Confidence 33222222224555565655543 33433322111 12332 133444555543322 12221000 00000 No 93 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.27 E-value=2.4e-10 Score=73.29 Aligned_cols=443 Identities=8% Similarity=-0.066 Sum_probs=206.6 Q ss_pred chHHHHHHHHhcCCCChhhHHh--hHHHHhhccchhhhhhhhhhhhhhhccCCCCcc-------------ccceecCchH Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPEL--IPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-------------HDKLMNSGTG 69 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-------------~~~~~~~~l~ 69 (518) |+|-+..-+|.. |. .-+.+ .....+.|.+.. ..... .-|..+..+.. ..-...-+++ T Consensus 1 Mn~iDr~i~~~s--P~-~a~~R~~ar~~~~~y~aa~----~~r~~-~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a 72 (548) T protein:vir:95 1 MNLIDRLLEPLA--PE-LVARRLAAREAIQAYEAAR----PGRTH-KAKRQPLGADTSLQKSAVSMREQCRKLDEDHDLV 72 (548) T ss_pred CchHHhHhhhcc--hH-HHHHHHHhHHHhccccccC----ccccc-cccCCCCChHHHHHHHHHHHHHHHHHHHhcChHH Confidence 666665556653 21 11111 111122222221 11111 11111111100 0012245789 Q ss_pred HHHHHHHHHHHcCC-cceEE--eccccccchHHHHHH----HHHHHhh------cChHHHHHHHHHHHHhhCCEEEEEEE Q lcl|Aclame:pro 70 NEIVVVAAEYISGK-PLSID--VTGVNGSKDENLTKQ----LKEALRI------DNFDSKSVKIVELAGGSGVSAVKINI 136 (518) Q Consensus 70 ~~i~~~~A~ll~~e-~~~i~--v~~~~~~~d~~~~~~----l~~vl~d------n~f~~~~~~~~e~~~a~G~~~~k~~~ 136 (518) +.+++.+.+.|.+. -..|. .-+.+...++.+++. |+...++ .+|+.....++...+..|.++++..+ T Consensus 73 ~~av~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~ 152 (548) T protein:vir:95 73 TGLLDRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLM 152 (548) T ss_pred HHHHHHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeee Confidence 99999999999885 22222 222222222334443 3444432 34777777788888999999999988 Q ss_pred ECC---------eEEEEEEcCCeeEEEEEc---CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEE Q lcl|Aclame:pro 137 LNG---------RPSISVHSSSQFWIDFKN---NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYS 204 (518) Q Consensus 137 d~~---------~i~i~~v~ad~~~P~~~~---g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ 204 (518) ... ..+|..+.||.+ +.-.+ +.+...| |+.+++ -.+-|. T Consensus 153 ~~~~~~~~g~~~~~~lqliepd~l-~~~~~~~~~~i~~GI-----------------E~D~~G-----------rp~aY~ 203 (548) T protein:vir:95 153 GRVPNYTFATSVPFALELLEPDYL-PFSYNNLSKGIVQGI-----------------ERDTWR-----------RKRAYH 203 (548) T ss_pred cccccccCCcccceEEEEechhhc-CCCCCCCCCceeeee-----------------EECCCC-----------ceEEEE Confidence 632 147888988886 22112 2222222 221111 113333 Q ss_pred EEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHH Q lcl|Aclame:pro 205 VIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYF 284 (518) Q Consensus 205 ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~ 284 (518) +++...++..... ....+..++.+ -+.++..+ ...+-.-|+|.|+.++..++.|+.- T Consensus 204 i~~~hPgd~~~~~---------~~~~~~rvpA~----------~VlHif~~----~r~gQ~RGvs~lapvl~~l~~l~~y 260 (548) T protein:vir:95 204 LLKDHPGNLQTLG---------GSLAVKRVEAE----------RIIHIAYR----KRIGQNRGVPMLHAVLIRLADLKDY 260 (548) T ss_pred EeecCCCcccccc---------cccceeeechh----------Hheecccc----cCCccccCcchHHHHHHHHHHHhHH Confidence 4443332211000 00111111111 12222221 1222334999999999999999876 Q ss_pred HHHHHHHHHh-ccceeeechhhhccCCCCCccccccCCCcchhheeee-cCCcCCCCCCCccceEecccccHHHHHHHHH Q lcl|Aclame:pro 285 FTVYMREGEK-TKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQF-KGTLDAGAKLNDMIQFMQGDFRDGSYRETME 362 (518) Q Consensus 285 ~s~~~~e~~~-g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~ 362 (518) .+.-..--+. +--..+|-. . ++.+..... .+.+......+ .+..-..-.....++.++|+-....|..-.+ T Consensus 261 ~dael~~aki~A~~a~fi~~-----~-~~~~~~~~~-~~~~~~~~~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~~~f~~ 333 (548) T protein:vir:95 261 EESERVAARISAALAMYIKK-----G-NPDSYTVEP-GKDRKNRTIPIAPGMVFDDLEPGEDVGMIESNRPNPFLEGFRN 333 (548) T ss_pred HHHHHHHHHHhhhheeeeec-----C-CCccccCCC-CcccccccccccCCccccccCCCceeeecCCCCCCCCHHHHHH Confidence 6554333232 222333321 1 111100000 01111111111 1211111112345888888877788888999 Q ss_pred HHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCC--cCCc Q lcl|Aclame:pro 363 YFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEKAI--MRDE 439 (518) Q Consensus 363 ~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~~~--~~~~ 439 (518) .+++.|...+|+|+..|+-|-+. +=..+++.....-+++...|..+. ..+..+.+..|+.+-. ......+ .... T Consensus 334 ~~lr~IAaglGipYe~ltgD~s~-nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~l--~G~i~lP~~~~~~ 410 (548) T protein:vir:95 334 GQLRMIGAGTRSTYSSVSRAYDG-TYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQMYLL--ARKERLPADVDHR 410 (548) T ss_pred HHHHHHHhhcCCCHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcCCCCCCCch Confidence 99999999999999999766332 323333333333333333333333 3333344444433211 1111110 1112 Q ss_pred eeeEEEeCCC--CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHhccccCCCCch------- Q lcl|Aclame:pro 440 IRVIIEFPDP--MSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWED--EEIQAEVKRIYLENAIGEVPDPE------- 508 (518) Q Consensus 440 ~~v~v~f~D~--i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~e--eea~eev~rI~~E~~~~~~~dp~------- 508 (518) .-+.+.|--+ ...|+...++....++.+|++|.++.+++.-.++.+ ++..+|.+++++- +...+.+|. T Consensus 411 ~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~~~~-GL~~~~~~~~~~~~~~ 489 (548) T protein:vir:95 411 TLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKANRAA-GLVFSSDAYHQLVKSG 489 (548) T ss_pred hheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCCCCcccccccccc Confidence 2356788433 457999999999999999999999999987444443 2334444444322 221111111 Q ss_pred ----hccCcCCCCC Q lcl|Aclame:pro 509 ----AIGGMETKGG 518 (518) Q Consensus 509 ----~~~~~~~~gG 518 (518) ....-...|| T Consensus 490 ~~~~~~~~~~~~~~ 503 (548) T protein:vir:95 490 MDPVEAVQKVYLGV 503 (548) T ss_pred cCCCCchhhhcccc Confidence 0000001111 No 94 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.25 E-value=3.2e-10 Score=72.65 Aligned_cols=440 Identities=9% Similarity=-0.000 Sum_probs=198.9 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ++-.....+.++.|....-+.. ..+...+..+.. ..+.+ ...-++++.+++.+++.| T Consensus 25 ~~~a~~~~~~~~~w~p~~~s~~--~~~~~~~~~lr~---------RaRdl------------~rNn~~a~~av~~~~~nv 81 (533) T protein:vir:34 25 HGGGSGFGGQLRSWNPPSESVD--AALLPNFTRGNA---------RADDL------------VRNNGYAANAIQLHQDHI 81 (533) T ss_pred hhccCCCCCcccccccCCCCHH--HHHHHHHHHHHH---------HHHHH------------HhcChHHHHHHHHHHHHh Confidence 2222222233333331110000 000000000000 01111 123468999999999999 Q ss_pred cCCcceEEecc------ccccchHHHHHHHHHHH----hh----------cChHHHHHHHHHHHHhhCCEEEEEEEECC- Q lcl|Aclame:pro 81 SGKPLSIDVTG------VNGSKDENLTKQLKEAL----RI----------DNFDSKSVKIVELAGGSGVSAVKINILNG- 139 (518) Q Consensus 81 ~~e~~~i~v~~------~~~~~d~~~~~~l~~vl----~d----------n~f~~~~~~~~e~~~a~G~~~~k~~~d~~- 139 (518) .+.-.++.... .+...++.+++.++..+ ++ .+|+.....++...+..|.++++..+... T Consensus 82 VG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~ 161 (533) T protein:vir:34 82 VGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWDTSS 161 (533) T ss_pred hCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEEeeeccCC Confidence 99854444321 11222344444444433 22 14777777777788899999999887632 Q ss_pred ----eEEEEEEcCCeeEEE--EEcC-cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCc Q lcl|Aclame:pro 140 ----RPSISVHSSSQFWID--FKNN-EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDK 212 (518) Q Consensus 140 ----~i~i~~v~ad~~~P~--~~~g-~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~ 212 (518) ..++..+.||.+--. ..+| .+...|-++. .++- +-|.+++..... T Consensus 162 g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~---~Gr~-------------------------~aY~i~~~~~~~ 213 (533) T protein:vir:34 162 SRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQIND---SGAA-------------------------LGYYVSEDGYPG 213 (533) T ss_pred CCccceEEEEechhhcCCCCCCCCCCceEeeeEECC---CCCe-------------------------EEEEEeecCCCC Confidence 357888888875321 1122 2333332211 1111 222233321110 Q ss_pred cccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 TTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREG 292 (518) Q Consensus 213 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~ 292 (518) ... ..+..++. ....+..-+.|+..+ ...+-.-|+|.|+.++..++.+|.-.+.-..-- T Consensus 214 ~~~-------------~~~~~~~~----~~~v~a~~VlH~f~~----~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a 272 (533) T protein:vir:34 214 WMP-------------QKWTWIPR----ELPGGRASFIHVFEP----VEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSA 272 (533) T ss_pred ccc-------------cccceeee----eeccChhHeeeeccc----cCCCcccCCchHHHHHHHHHHHHHHHHHHHHHH Confidence 000 00000000 011112223333322 122334499999999999999987655543333 Q ss_pred Hh-ccceeeechhhhccCC-------CCCc-cccccCCCcc------hhheeeecCCcCCCCCCCccceEecccccHHHH Q lcl|Aclame:pro 293 EK-TKTKIAASERMFRKKV-------NKST-DKEEWSMNVD------EDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSY 357 (518) Q Consensus 293 ~~-g~~ri~v~~~~l~~~~-------~~~~-~~~~~~~d~d------~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~ 357 (518) +. +.-..||-... .... .+.. ......-... ...-..+.......-.....++.++|.-....| T Consensus 273 ~i~A~~a~fi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~ 351 (533) T protein:vir:34 273 IVKAMYAATIESEL-DTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQTAQDTDNGY 351 (533) T ss_pred HHhhhheeeeecCC-CcccccccccCCCcccccccccccchhhhhccCcceeeccCceeeecCCCCeeeecCCCCCCCCH Confidence 32 22333332111 0000 0000 0000000000 000001111111111223448888888888888 Q ss_pred HHHHHHHHHHHHHHhCCCccccccCCccc---hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcc--c Q lcl|Aclame:pro 358 RETMEYFAQKAVSKSGYNPATFNLGNREV---KATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGGTNN--K 431 (518) Q Consensus 358 ~~~i~~~l~~i~~~~G~s~~tf~~d~~~~---TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~~~~--~ 431 (518) ..-...+++.+...+|+|+..++-|-+.. ++.....+..+.+.. .|..+.. .+..+.+..|+.+- +... . T Consensus 352 ~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~---~q~~~~~~~~~pi~~~wl~~ai-l~G~i~~ 427 (533) T protein:vir:34 352 SVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMG---RRKFVASRQASQMFLCWLEEAI-VRRVVTL 427 (533) T ss_pred HHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HcCcccC Confidence 88888999999999999999997663332 344444444444443 3333333 33333333333221 1111 1 Q ss_pred cCCCcCC-----ceeeEEEeC--CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHhcccc Q lcl|Aclame:pro 432 EKAIMRD-----EIRVIIEFP--DPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWED--EEIQAEVKRIYLENAIG 502 (518) Q Consensus 432 ~~~~~~~-----~~~v~v~f~--D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~e--eea~eev~rI~~E~~~~ 502 (518) ..+...+ ..-..+.|- --...|+...++....++.+|++|.++.++++..++.+ ++..+|.++++ |.+.. T Consensus 428 p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~ev~~q~a~e~~~~~-~~gl~ 506 (533) T protein:vir:34 428 PSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRETMERR-AAGLK 506 (533) T ss_pred CCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHH-hcCCC Confidence 1111111 111345553 34567899999999999999999999999887444433 22333333332 22232 Q ss_pred CCCCchhccCcCCCCC Q lcl|Aclame:pro 503 EVPDPEAIGGMETKGG 518 (518) Q Consensus 503 ~~~dp~~~~~~~~~gG 518 (518) .+.+|.....-+..+. T Consensus 507 ~~~~~~~~~~s~~~~~ 522 (533) T protein:vir:34 507 PPAWAAAAFESGLRQS 522 (533) T ss_pred CCCCCCcCccCCCCCC Confidence 2222211111011111 No 95 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.14 E-value=1.3e-09 Score=69.34 Aligned_cols=456 Identities=10% Similarity=0.022 Sum_probs=204.8 Q ss_pred cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC-CC------------cc-ccceecCch Q lcl|Aclame:pro 3 VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY-VP------------TV-HDKLMNSGT 68 (518) Q Consensus 3 ~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~------------~~-~~~~~~~~l 68 (518) ...+..+.|...=.|-|-... ......|.+..+ ..+. ..-|.... .+ .. ..-...-++ T Consensus 1 m~~~~~r~~~~~a~~~~~~~~----~~~~~~y~gA~~--~~r~--~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~ 72 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSA----SLGGGGLEGASR--LSRE--TVSWNPSLRSPDALINPLKRIADARGRDMADNDGF 72 (553) T ss_pred Ccchhhhhhcccccccchhhh----hhhccccccccc--CCCc--ccccccCCCChHHHHHHHHHHHHHHHHHHHhcChH Confidence 223333333332222221100 000011111000 0000 00010000 00 00 001124578 Q ss_pred HHHHHHHHHHHHcCCcceEEecc-------ccccchHHHHHHHHHHHh----h----------cChHHHHHHHHHHHHhh Q lcl|Aclame:pro 69 GNEIVVVAAEYISGKPLSIDVTG-------VNGSKDENLTKQLKEALR----I----------DNFDSKSVKIVELAGGS 127 (518) Q Consensus 69 ~~~i~~~~A~ll~~e~~~i~v~~-------~~~~~d~~~~~~l~~vl~----d----------n~f~~~~~~~~e~~~a~ 127 (518) ++.+++.+.+.+.+.-.++.... .+...++.+++.++..++ + .+|+....-++...+.. T Consensus 73 a~~av~~~~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~d 152 (553) T protein:vir:63 73 TNGAVGYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKT 152 (553) T ss_pred HHHHHHHHHHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhC Confidence 99999999999999865544321 122223444444443332 1 24777777777788889 Q ss_pred CCEEEEEEEECC-----eEEEEEEcCCeeEEEE--EcC-cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccce Q lcl|Aclame:pro 128 GVSAVKINILNG-----RPSISVHSSSQFWIDF--KNN-EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGG 199 (518) Q Consensus 128 G~~~~k~~~d~~-----~i~i~~v~ad~~~P~~--~~g-~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~ 199 (518) |.+++++.+... ..++..+.||.+--.. .+| .+...|-++ ..++ T Consensus 153 GE~~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d---~~Gr------------------------- 204 (553) T protein:vir:63 153 GEVLATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYD---KRGR------------------------- 204 (553) T ss_pred CceEEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEEC---CCCc------------------------- Confidence 999999887532 2578888887764321 122 233333221 1111 Q ss_pred EEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEec-CcccCccccCCCCCcchhhhhHHHH Q lcl|Aclame:pro 200 FVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLIN-NSPSNTRYPHLNLGESDLSQCTNYL 278 (518) Q Consensus 200 ~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~-n~~~N~~~~~sPlG~S~~~~~~~~i 278 (518) .+-|.+++...+...... .....|..+... +..+..-+.++. +..+ +-.-|+|.|+.++..+ T Consensus 205 ~vaY~i~~~hPgd~~~~~--------~~~~~~~r~~~~----~~v~a~~vlH~f~~~r~-----gQ~RGis~lapvl~~l 267 (553) T protein:vir:63 205 PQGYWIQVAHPGDLYQMA--------PDMYKWKFVQQS----KPWGRRQVIHILEPREP-----DQSRGIADIVSGLKDM 267 (553) T ss_pred eEEEEeeccCCCcccccc--------ccccceeeeccc----cccChhHheecccccCC-----CcccCCchHHHHHHHH Confidence 233334443332211000 000111111111 111111222322 2222 2334999999999999 Q ss_pred HHHHHHHHHHHHHHH-hccceeeechh-----hhccCCCCCcccccc-CCC----------cchhheeeecCCcCCCCCC Q lcl|Aclame:pro 279 FAVDYFFTVYMREGE-KTKTKIAASER-----MFRKKVNKSTDKEEW-SMN----------VDEDYFMQFKGTLDAGAKL 341 (518) Q Consensus 279 ~~lD~~~s~~~~e~~-~g~~ri~v~~~-----~l~~~~~~~~~~~~~-~~d----------~d~~~~~~~~~~~~~~~~~ 341 (518) +.||.-.+.-..--+ .+--..||-.. .......+....... .+. ..... ..+.......-.. T Consensus 268 ~~l~~y~daeL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~pG~i~~L~p 346 (553) T protein:vir:63 268 RMAKRFKEMSLQNAVINASYAAAIESELPPEFIHSQMSGGSPNADMVGIFGKYMDALKAYVGGANN-IQIDGAKIPHLFP 346 (553) T ss_pred HHHhHHHHHHHHHHHHhhhheeeeecCCChhhhhhhcccccccccccccccccccccccccccccc-eeecCceeeecCC Confidence 999886665433323 23333444211 111000000000000 000 00000 0111111111122 Q ss_pred CccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccc---hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH Q lcl|Aclame:pro 342 NDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV---KATEIWSLQDATVRKIEKKKRLIQN-VYEQML 417 (518) Q Consensus 342 ~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~---TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li 417 (518) ...++.++|.-....|..-...+|+.|...+|+|+..++-|-+.. ++.....+..+.+. ..|..+.. .++.+. T Consensus 347 Ge~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~~~~e~~r~~~---~~q~~~~~~~~~pi~ 423 (553) T protein:vir:63 347 GTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQAGIAMTRRFLE---GRKKMCADRLATEFF 423 (553) T ss_pred CCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH Confidence 345888999888888999999999999999999999997664332 34444444444444 33433333 333344 Q ss_pred HHHHHHHHHhhccccCCCc--C---------CceeeEEEeCCC--CCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCC Q lcl|Aclame:pro 418 WDFLYLLTGGTNNKEKAIM--R---------DEIRVIIEFPDP--MSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWE 484 (518) Q Consensus 418 ~~il~l~~~~~~~~~~~~~--~---------~~~~v~v~f~D~--i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~ 484 (518) +..|+.+-. ......+. . ...-+.+.|--+ ...|+...++....++.+|+.|.++.++++-.++. T Consensus 424 ~~wl~~a~l--~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~~i~~G~~t~~~~~a~~G~D~~ 501 (553) T protein:vir:63 424 TLWLEEAIA--AGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAVMRIDAGLSTYEREIARLGGDFR 501 (553) T ss_pred HHHHHHHHH--cCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHH Confidence 443333211 11111000 0 001123556544 35689999999999999999999999998744444 Q ss_pred H--HHHHHHHHHHHHhccccCCCCchhc----------------cCcCCCCC Q lcl|Aclame:pro 485 D--EEIQAEVKRIYLENAIGEVPDPEAI----------------GGMETKGG 518 (518) Q Consensus 485 e--eea~eev~rI~~E~~~~~~~dp~~~----------------~~~~~~gG 518 (518) + ++..+|.+++++- +.....+|... ..-+.+.| T Consensus 502 ~v~~q~a~e~~~~~~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (553) T protein:vir:63 502 KSFAQRAREDALLKKY-GLTFNLSAKRSLGDGRDAATGIAEDPAAAQTSQQG 552 (553) T ss_pred HHHHHHHHHHHHHHHc-CCCCCCCCccccCCCcccCCCCCCCCCCCCccccc Confidence 3 2334444444332 22111111100 00111111 No 96 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=99.13 E-value=1.6e-09 Score=68.84 Aligned_cols=433 Identities=9% Similarity=-0.020 Sum_probs=192.7 Q ss_pred CCcCch-------------HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCc Q lcl|Aclame:pro 1 MGVWSV-------------MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSG 67 (518) Q Consensus 1 ~~~~~~-------------~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 67 (518) -|=+++ -|+.|+.=|.|+.- ... =..|++..+. +.....|..+.. +-.=.| T Consensus 5 ~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~-~~~--r~~yl~~~~~---~~~e~~Y~~rl~----------rA~~~n 68 (489) T protein:vir:78 5 NGQGSGVKTKHREWLHYAPKWQKVRHALAGELV-SYL--RNVGLNEPDK---AYGEARQAEYEA----------GGIVYN 68 (489) T ss_pred CCccCCCCccCHHHHHHHHHHHHHHHHhcCccc-ccc--cCCCCCCCCC---CCChHHHHHHHh----------ccccCC Confidence 233332 33333333444210 000 0001111110 000011221111 112368 Q ss_pred hHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHH-HhhcChHHHHHHHHHHHHhhCCEEEEEEEEC-------- Q lcl|Aclame:pro 68 TGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEA-LRIDNFDSKSVKIVELAGGSGVSAVKINILN-------- 138 (518) Q Consensus 68 l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~v-l~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~-------- 138 (518) +.+.+++.++.++|..+|+++++ +.++.+++.+ .+-++++..++..+..++..|.+.+-+-+.. T Consensus 69 ~~~~tl~~l~G~vfrk~p~~~~p-------~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ad 141 (489) T protein:vir:78 69 FTRRTLSGMVGSVMRKEPEINIP-------KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAE 141 (489) T ss_pred hHHHHHHHHhchhhcCCcceecc-------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHH Confidence 99999999999999999998764 2333333322 3356888899999999999999998775532 Q ss_pred -----CeEEEEEEcCCeeEEEE---EcC--cEEEEEEEEEEEecC--------ceEEEEEEEEeecccceeeeeeccceE Q lcl|Aclame:pro 139 -----GRPSISVHSSSQFWIDF---KNN--EPFRFNFFEEIPTSN--------KADIYYLVESREIKQWDKEGKKLSGGF 200 (518) Q Consensus 139 -----~~i~i~~v~ad~~~P~~---~~g--~~~~~~f~~~~~~~~--------~~~~y~~lE~he~~~~~~~~~~~~~~~ 200 (518) -+|-|..+.|.+++=-- .+| .++-++|.+.....+ ..+.|++|+.-. -++ T Consensus 142 e~~~~~rPy~~~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~------------~g~ 209 (489) T protein:vir:78 142 QNAGLLNPTIAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDS------------DGN 209 (489) T ss_pred HHHhcCCcEEEEechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecCC------------Ccc Confidence 15778888888876531 245 355566665433211 122344443221 123 Q ss_pred EEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHH Q lcl|Aclame:pro 201 VTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFA 280 (518) Q Consensus 201 I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~ 280 (518) ...++|+............+ + .+.. . .+....++|+++-.. .|.... |.+-|-++ -. T Consensus 210 ~~~~~~r~~~~g~~~~~~~~-------~-----~~~~-g-~~~l~~IPfv~~~~~-~~~~~~----~~pPLl~L----A~ 266 (489) T protein:vir:78 210 YRQRLFRFDAEGGAQEDVVE-------I-----YPDL-G-ESLRGVIPFTFIGAT-NNDATI----DDAPLLPL----AE 266 (489) T ss_pred eEEEEEEeecCCcccceeeE-------E-----eccC-C-CCccCeeeEEEEecC-CCCCCC----CcCchHHH----HH Confidence 33455654432221111000 0 0000 0 112222222222211 122221 33333322 22 Q ss_pred HHHHHHHHHHH----HH-hccceeeech-hhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccH Q lcl|Aclame:pro 281 VDYFFTVYMRE----GE-KTKTKIAASE-RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRD 354 (518) Q Consensus 281 lD~~~s~~~~e----~~-~g~~ri~v~~-~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~ 354 (518) ||..+=+..-+ +. .+.+..++.- .-......+.+......+... .......++. ..++++.... T Consensus 267 lni~Hy~~ssd~~~~l~~~~~P~l~i~G~d~~~~~~~~~~~~~~i~~g~~--------~~~~lp~~~~--~~~ie~~~~~ 336 (489) T protein:vir:78 267 LNIGHYRNSADNEESSFVVGQPTLFIYPGENLTPQAFKEANPNGIKFGSR--------RGHNLGYGGS--AQLIQAGENN 336 (489) T ss_pred HHHHHhhhhhHHHHHHHHcccceeeeecCccCCcccccccCccceeeCCc--------ccccCCCCCC--cceeccCcch Confidence 23333332222 23 3444444321 000000000000000111110 0111111222 2344444332 Q ss_pred HHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC Q lcl|Aclame:pro 355 GSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKA 434 (518) Q Consensus 355 ~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~ 434 (518) .. .+.++.+-+++. . +++..+. .++++|||+...+.++..+....+...++.++.++++.+... .+. +. T Consensus 337 ~~-r~~l~~le~qm~-~--lGa~l~~-~~~~~Ta~~~~~~~~~~~S~L~~~a~~~e~al~~~l~~~a~w----~G~--~~ 405 (489) T protein:vir:78 337 LA-RQNMLDKEQQAI-Q--IGAQLIT-PTQQITAQSARIQRGADTSVMATIARNVSQAYTDALRWVAVM----LGK--PE 405 (489) T ss_pred HH-HHHHHHHHHHHH-H--Hhhhhcc-CCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----cCC--CC Confidence 22 223333222211 2 2222333 345689999999999999999999999999998887655432 111 11 Q ss_pred CcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCc Q lcl|Aclame:pro 435 IMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM 513 (518) Q Consensus 435 ~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~ 513 (518) .....+.++.+|..... | .+.++.+.++.++|.+|.+++++.+- .+.-+...+++..+|.++.... ....++- T Consensus 406 ~~~~~i~~n~dF~~~~~-d-~~~~~al~~~~~~G~is~~t~~~~L~~~gv~d~~~e~~~~ei~~~~~~~----~~~~~g~ 479 (489) T protein:vir:78 406 DTEVEFRLNMDFFLEPM-T-AQDRAAWMADINAGLLPATAYYAALRKAGVTDWTDADIKDAVADQPLPV----ATEVQGE 479 (489) T ss_pred CCceEEEeecccCcccC-C-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHHHHHHHhhcCCCc----ccCCccc Confidence 11113445667775433 3 33567778888999999999887552 1222222233344555542111 1111111 Q ss_pred CCCCC Q lcl|Aclame:pro 514 ETKGG 518 (518) Q Consensus 514 ~~~gG 518 (518) -+.++ T Consensus 480 ~~~~~ 484 (489) T protein:vir:78 480 IPQSA 484 (489) T ss_pred CCCCc Confidence 11111 No 97 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.12 E-value=7.1e-10 Score=70.73 Aligned_cols=405 Identities=10% Similarity=-0.009 Sum_probs=184.8 Q ss_pred CCcCchHHHHHHHHh-cCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWL-NGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~-~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) ||.|..-. ++|| .|.|....+.++ ..-+.+..+++.||+..|+- T Consensus 12 ~~~g~~~~---~~~~~~~~~~~~~~~~l--------------------------------~a~Y~~~~l~~~~vd~~a~d 56 (437) T protein:vir:52 12 LKLGSKQE---QTYYSPSLSLTDDLVQL--------------------------------EALWRDNWIANKVCIKRPED 56 (437) T ss_pred hcCCCccc---cceeecCccccccHHHH--------------------------------HHHHHhCchhhHHhhcchHH Confidence 22222111 2232 111110000000 00122456899999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcCc Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNE 159 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~ 159 (518) ++.+...|+. ++ .++..-+.+++.++.-+++..+.+++..+-..|++++-+..++..+ --|+--.|. T Consensus 57 ~~r~~~~i~~--~d--~~~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~---------~~pl~~~~~ 123 (437) T protein:vir:52 57 MVRNWREIYS--ND--LNSKQLDLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNT---------SAPLKPTER 123 (437) T ss_pred hhcCCceEec--CC--CCHHHHHHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCc---------ccccccCCc Confidence 9998877653 22 1222234566666666788899998888888898887766554211 122211233 Q ss_pred EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce Q lcl|Aclame:pro 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) Q Consensus 160 ~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (518) +..+..+..... .-...... +-.... -|...+ |+-.++... . .+.+..+ T Consensus 124 ~~~~~v~~~~~v------~~~~~~~~----dp~s~~--fg~p~~--y~v~~~~~~--------~---------~iH~SRi 172 (437) T protein:vir:52 124 LKRLIILPKWKI------SPTGTKDD----DVLSPN--FGRYSE--YSILGGSQS--------I---------TVHHSRL 172 (437) T ss_pred eeEEEEechhhc------cccccccc----cccccc--cCcceE--EEEecCCcc--------e---------eEcccee Confidence 333222211100 00000000 000000 011111 111111000 0 0011111 Q ss_pred e-ecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccc Q lcl|Aclame:pro 240 V-SIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEE 318 (518) Q Consensus 240 ~-~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~ 318 (518) + ..|.+ +| ...+ .-+|+|++..+.+.++..+.+-.....=+...+..++=.+.+......+...... T Consensus 173 i~~~~~~------~~-~~~~-----~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~l~~~~~~~~~ 240 (437) T protein:vir:52 173 IILNAND------AP-LSDN-----DIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKIDIFKIAGLSDKIAAGMENEVA 240 (437) T ss_pred EEecCcc------CC-Cccc-----cccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecchHHHHhcCCcHHHHH Confidence 1 11111 11 1122 2359999999999999998887766655544444444333322211111110000 Q ss_pred cCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccchHHHHHHHHHH Q lcl|Aclame:pro 319 WSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREVKATEIWSLQDA 397 (518) Q Consensus 319 ~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~TAtEi~s~~~~ 397 (518) .+-...+.++...+..- -+....++.++.++ ......++.+.+.|...+|++...| |-..++. || .....+- T Consensus 241 -~~~~~~~~~~~~~~~~~--~d~~~~~e~~~~~~--sgl~~~l~~~~~~iaaa~~iP~t~L~G~s~~Gl-as-ge~D~~~ 313 (437) T protein:vir:52 241 -SVISAVQEIKSATNSLL--LDAENEYDRKELTF--TGLKDLLTEFRNAVAGAADMPVTILFGQSVSGL-AS-GDEDIQN 313 (437) T ss_pred -HHHHHHHHhcCCCceEE--EcCCcceEEEecCc--CCHHHHHHHHHHHHHHHhcCchhhhcCcCcccc-cc-cHHHHHH Confidence 00000001111111111 11223466665554 2344566777888899999987665 4433333 33 2234445 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH-------HHHHHhCCC Q lcl|Aclame:pro 398 TVRKIEKKKR-LIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST-------LNNMNSALA 469 (518) Q Consensus 398 t~~t~~~~~~-~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~-------~~~~~~aG~ 469 (518) .|.+++.+|. .++..|+.++..++..+ .+. .+ .+++|.|++-...|.+++++. +++++++|+ T Consensus 314 yyd~i~~~Qe~~l~p~le~l~~~i~~~~-------~g~-~~--~~~~~~f~pL~~~s~kekae~~~~~a~a~~~~~~~g~ 383 (437) T protein:vir:52 314 YHEAIRRLQETRLRPIFEIIDPLICNEL-------FGG-LP--ADWWFEFVPLTTVKQEQQINMLNTFATAANTLIQNGV 383 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCC-CC--CcceEEeCCcCCcCHHHHHHHHHHHHHHHHHHHhcCC Confidence 6777888874 57777777777554321 122 22 268999999988887666554 667778899 Q ss_pred CCHHHHHHHH-----cCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 470 MSVEEKVKLI-----HPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 470 ~S~~~~v~~~-----~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++..++..++ ++..++++.++. +- .++...+..+|.... +...+ T Consensus 384 i~~~e~r~~L~~~g~~~~i~~~~~~~~-~~--~~~~~~~~~~~~~~~--~~~~~ 432 (437) T protein:vir:52 384 LNEYQIANELRESGLFANISAEHIEEL-KN--ADEFAGNFEEPEKME--GAQVQ 432 (437) T ss_pred CCHHHHHHHHHhcCCCCCCCccccccc-cC--CCCCCCccCCCCCCC--CCCCC Confidence 9988877665 445555433211 00 000000000111000 01111 No 98 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=99.12 E-value=1.8e-09 Score=68.56 Aligned_cols=467 Identities=11% Similarity=0.045 Sum_probs=197.3 Q ss_pred CCc-CchH-------HHHH-----HHHhcCCCChhhHHhhHHHHh---hccchhhhhhhhhhh-hhhhccCCCCc-cccc Q lcl|Aclame:pro 1 MGV-WSVM-------TRFI-----KGWLNGKPNGSEPELIPKYLP---LVPDNQKEWSKDSYL-TSLWAQGYVPT-VHDK 62 (518) Q Consensus 1 ~~~-~~~~-------~~~~-----~~w~~g~p~~~e~~~~~~~~~---~~~~~~~~~~~~~~~-~~~w~~~~~~~-~~~~ 62 (518) |-. ++.. +..| +.|= .-.+ ....+.++|.. ++....+. ..|. ...+.....+. ..+. T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~r~~~~~~w~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~rs 77 (651) T protein:vir:80 3 LATTTTDKNRQTYDETHDVSSYVKKEYK-RFCD-ARQVCEETWLEAWGMYLSTPEA---QDYLRDQVLRSVGDVNADWRH 77 (651) T ss_pred ccccccchhhhhhhhhHHHHHHHHHHHH-HHHH-HhhhhhhhHHHHHHhhcccHHH---HHhhccccccccCCCCCCCCc Confidence 221 1111 1111 1111 0000 00011112221 11111000 0111 01111111111 1234 Q ss_pred eecCchHHHHHHHH----HHHHcCCcceEEeccccccc-hHHHHHHHHHHH----hhcChHHHHHHHHHHHHhhCCEEEE Q lcl|Aclame:pro 63 LMNSGTGNEIVVVA----AEYISGKPLSIDVTGVNGSK-DENLTKQLKEAL----RIDNFDSKSVKIVELAGGSGVSAVK 133 (518) Q Consensus 63 ~~~~~l~~~i~~~~----A~ll~~e~~~i~v~~~~~~~-d~~~~~~l~~vl----~dn~f~~~~~~~~e~~~a~G~~~~k 133 (518) ++..|.....++.+ .+.+|+...-+++.+....+ ....++.++.++ .+++|.......+.+++..|.+++| T Consensus 78 ~~~~~~v~~~ve~~~~~l~~~~~~~~~~~~~~p~~~~d~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~l~~G~~i~k 157 (651) T protein:vir:80 78 KITTGKAFEAIETIHAYLMSATFPNKNWFDVVPAKPGQDNLLVSRLIKRYVQDKLTEGKFRAAYANFLRQLLITGNSVLA 157 (651) T ss_pred cccChhHHHHHHHHHHHHHHhhcCCCceeEeccCCchhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhcccCceEEE Confidence 45555555544432 33334444445554433222 233445566554 4678999888999999999999999 Q ss_pred EEEEC--------------------------------CeEEEEEEcCCeeEEEEEcCcEEEEEEEEEEEe--cC-----c Q lcl|Aclame:pro 134 INILN--------------------------------GRPSISVHSSSQFWIDFKNNEPFRFNFFEEIPT--SN-----K 174 (518) Q Consensus 134 ~~~d~--------------------------------~~i~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~--~~-----~ 174 (518) ++|+. ++|+|+.|++..|++.-+=..+.++.|+.+... .+ + T Consensus 158 v~we~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~~dp~a~~~~d~~~v~~~~~t~~~l~~l~~ 237 (651) T protein:vir:80 158 LPWRVETAEVKKKVQVRTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDCFYDPNVTDPNRGAFIRKLTKTKADILNLLS 237 (651) T ss_pred EeecceeeeeehheeccccccccccceeeeccceeeeceeEEEEecHHHeeecCCCcCccccceeeeeeeeHHHHHHHHh Confidence 99862 457899999999998532233444544433221 11 0 Q ss_pred eEEEEEE------EE-----eecccceee----e--ee---ccce-EEEEE-EEeccCCccccccccccccccccccccc Q lcl|Aclame:pro 175 ADIYYLV------ES-----REIKQWDKE----G--KK---LSGG-FVTYS-VIKIDGDKTTPISAERLPEQITSYLHTN 232 (518) Q Consensus 175 ~~~y~~l------E~-----he~~~~~~~----~--~~---~~~~-~I~n~-ly~~~~~~~v~~~~~~~~~~~~~~~~~~ 232 (518) .-+|.-. +. +........ . .. .... .+++. .+..++... .. .+..+. T Consensus 238 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~~~~~d~e~~~~---~~--------~~v~~~ 306 (651) T protein:vir:80 238 EGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEYWGDIHLENKTY---HD--------VVVTIM 306 (651) T ss_pred cccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEEEEEeeccCCce---EE--------EEEEEc Confidence 0011100 00 000000000 0 00 0000 01110 011111100 00 000011 Q ss_pred cCcccceeecC--CCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeeechhhhccC Q lcl|Aclame:pro 233 DIQLNHSVSIG--LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKTKIAASERMFRKK 309 (518) Q Consensus 233 ~~~~~~~~~tg--~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~ri~v~~~~l~~~ 309 (518) +-..-..-.++ ...||+++-+.+ .+++.+|+|....+.+.++.||....++.+-.. .+.+++.|+.+.+... T Consensus 307 g~~il~~~~~~~~~~~Pf~~~~~~~-----~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v~~d~~~~~ 381 (651) T protein:vir:80 307 GNEVLRFEQNPYWCGRPFVIGTYIP-----TARQPYAMGALQPNLGMLHELNIITNQRLDNLELAIDQMYTLRSDGLLQP 381 (651) T ss_pred CcEEecccccCCCCCCCeeeeccee-----cCccccCCChHHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCccccH Confidence 00000000111 123555443332 346789999999999999999999999988775 5777777765532211 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccc-cHHHHHHHHHHHHHHHHHHhCCCccccccCC---cc Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDF-RDGSYRETMEYFAQKAVSKSGYNPATFNLGN---RE 385 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~i-r~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~---~~ 385 (518) .+ ..+.+.--++ ++. .+ .+..++|.- ........++.+-..+...+|++.-..|.+. +. T Consensus 382 ~~-------l~~~pg~vi~--~~~-----~~---~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~ 444 (651) T protein:vir:80 382 ED-------VYTEPGKVFL--VSD-----HG---DLQPLANQSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSGER 444 (651) T ss_pred HH-------hhcCCCceEE--ecC-----CC---CceeeccCcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhh Confidence 00 0111111111 111 11 133444321 1233455677777778889999876666643 34 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccc-----cCC-------CcCCceeeEEEeCCCCCC Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGGTNNK-----EKA-------IMRDEIRVIIEFPDPMSV 452 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~~~~~-----~~~-------~~~~~~~v~v~f~D~i~~ 452 (518) +|||||....+..-.........+.. .++.+++.++++...+.... .+. ......+++++++- +.. T Consensus 445 ~TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~ri~~~~~~~~~~~~i~~~dl~~~~~i-v~~ 523 (651) T protein:vir:80 445 VTAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQQFTDQPGMVRVAGDEAGAYEYYELDVEDLQKEVRL-VPI 523 (651) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccceeecccccccccccccCccceeeeeee-eec Confidence 79999988888777777777777766 68888888888876543210 000 00111234444432 111 Q ss_pred CH------HHHHHHHHHHHhCCCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhcc-------C------ Q lcl|Aclame:pro 453 NL------NELSSTLNNMNSALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIG-------G------ 512 (518) Q Consensus 453 d~------~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~-------~------ 512 (518) .. ...++.+..+.+.+.. .|.... ......++.+.+..+.. +|..+- . T Consensus 524 g~~~~~~r~~~~~~l~~~~q~~~~---------~p~~~~~~~~~~~~~~l~~~~g~~---~~~~~l~~~~q~~~~~~~~~ 591 (651) T protein:vir:80 524 GSDHVIERKQYIEDRLTFIQAVAQ---------VPEMGQLVDYKRILVDLLQHWGFE---EPEAYLKQQDQQAPANPQEA 591 (651) T ss_pred cHHHHHHHHHHHHHHHHHHHhhcc---------CCccchhhhHHHHHHHHHHHcCCC---CcHHhcCCCccchhhhhhHH Confidence 11 1222222222221110 011100 01111122222221111 110000 0 Q ss_pred ----cCCCCC Q lcl|Aclame:pro 513 ----METKGG 518 (518) Q Consensus 513 ----~~~~gG 518 (518) ....++ T Consensus 592 ~~~q~~~~~~ 601 (651) T protein:vir:80 592 LLSQAKDVGG 601 (651) T ss_pred HHhhHHHHHH Confidence 000000 No 99 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=99.11 E-value=1.9e-09 Score=68.46 Aligned_cols=429 Identities=10% Similarity=-0.005 Sum_probs=189.8 Q ss_pred CCcCchHHHHH---HHHhcCCCChhh-HHh-hHHHHhhccchhhh-hhhhhhhhhhhccCCC----CccccceecCchHH Q lcl|Aclame:pro 1 MGVWSVMTRFI---KGWLNGKPNGSE-PEL-IPKYLPLVPDNQKE-WSKDSYLTSLWAQGYV----PTVHDKLMNSGTGN 70 (518) Q Consensus 1 ~~~~~~~~~~~---~~w~~g~p~~~e-~~~-~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~~----~~~~~~~~~~~l~~ 70 (518) |.|..+=-.|. ..|-.-.--+.+ .+. =.+|+|.......+ ..+..|.. |.+... ....++-.=.|..+ T Consensus 14 m~V~~~hp~y~a~~~~W~~~~d~g~~~~k~~g~~YLPk~~~~~~~~~~d~~y~~--~~~~~~~~y~~~~~~rA~~~n~~~ 91 (488) T protein:vir:96 14 MLTPIYHPDYLVNAPQWLRNLDCVMDNIKRKKQTYLPNLGAIPPEAKTDPKVTA--LAAKIEKDWEDLTWRLANYVNIVN 91 (488) T ss_pred ecccccCHHHHHHhhhhhHhhhhhhHHHHHhhhhcCCCCCCccccccCcchhhh--hhccchhhhHhhhhhccccCchhH Confidence 66655544444 344311000000 000 01233322211100 00111100 000000 00001222369999 Q ss_pred HHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHH-HhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----------- Q lcl|Aclame:pro 71 EIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEA-LRIDNFDSKSVKIVELAGGSGVSAVKINILN----------- 138 (518) Q Consensus 71 ~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~v-l~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----------- 138 (518) .+++.++.++|.++|+++.+ +...++.+++.+ .+-++++..++..+..++..|.+.+-+-+.. T Consensus 92 ~tl~~l~G~vfrk~p~~~~~-----~~~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~T~ade~~~ 166 (488) T protein:vir:96 92 PTMNAITGAVMRREPEFDTM-----DNPVLIGLRDNIDGKGNGIDQECKQALNALQWGSRCGWLVRSHPESATMADWNKG 166 (488) T ss_pred HHHHHhcchhhccCceeccC-----CcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCcCCHHHHHHh Confidence 99999999999999998763 123344444332 3346888899999999999999998765532 Q ss_pred -CeEEEEEEcCCeeEEEE---EcCc--EEEEEEEEEEEecCceE-----EEEEEEEeecccceeeeeeccceEEEEEEEe Q lcl|Aclame:pro 139 -GRPSISVHSSSQFWIDF---KNNE--PFRFNFFEEIPTSNKAD-----IYYLVESREIKQWDKEGKKLSGGFVTYSVIK 207 (518) Q Consensus 139 -~~i~i~~v~ad~~~P~~---~~g~--~~~~~f~~~~~~~~~~~-----~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~ 207 (518) -+|-+..+.|.+++=-- .+|+ ++-+++.+.+...|... +|+.+ + ...|.|++.- |. T Consensus 167 ~~rPy~~~~~a~~IinW~~~~v~G~~~L~~v~lrE~~~~~D~~~~~~~~~~~~~---~--------l~~g~~~v~~--~~ 233 (488) T protein:vir:96 167 KKLPTAAFYDALHIIDWEVEYIDGEEKLTYLSLLEDYQERDGGTYVSKQRLINH---R--------LVDGLCEFQE--VT 233 (488) T ss_pred cCCcEEEEechhhhcCcceeccCCceeeEEEEEEEEEEeccCCCcccceEEEEE---E--------EECcEEEEEE--Ee Confidence 24778888888876531 2453 45565555444433211 11111 1 1123333322 22 Q ss_pred ccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 208 IDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTV 287 (518) Q Consensus 208 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~ 287 (518) .. ..+ . ..++...+ ..+....||+.+ -.. .|.... |.+-|-++ -.||..+=| T Consensus 234 ~~--~~~--------~--e~~~~~~g------~~~l~~IP~v~~-~~~-~~~~~~----~~pPLldL----A~lnl~Hy~ 285 (488) T protein:vir:96 234 DD--EYS--------D--EWTPVLIN------SKQSDTIPFFLA-SSQ-SNEWCI----DSTPLTSL----AEISLSIYV 285 (488) T ss_pred cC--Ccc--------c--ceEeecCC------CcccCeeEEEEE-ecC-CCCCCC----CCCchHHH----HHHHHHHHh Confidence 11 111 0 00000000 001112233322 211 122222 33333322 223333332 Q ss_pred HHHHH----HhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcC-CCCCCCccceEecccccHHHHHHHHH Q lcl|Aclame:pro 288 YMREG----EKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLD-AGAKLNDMIQFMQGDFRDGSYRETME 362 (518) Q Consensus 288 ~~~e~----~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~ir~~~~~~~i~ 362 (518) ..-++ ..+...+.|.. + .+...... -+.. ..-..+..... ....+ .+.+.++.+..- ..+.++ T Consensus 286 ~ssd~~~il~~~~~p~lv~~-~-----~~~~~~~~--~~~~-~~g~~~~~~~~~~~~~g--~~~~~e~~~~~l-~~~~l~ 353 (488) T protein:vir:96 286 MNAYSNKAMILANEAKWMVD-M-----GDMNKTMA--SEMN-PLGFTLAGRMPYYVKNG--DVKVIQAQFSPE-TENKVE 353 (488) T ss_pred hhhHHHHHHHhcCCceeeec-c-----CCCCcccc--cccc-cceeeecccccccccCC--ceeecCCchhHH-HHHHHH Confidence 22222 23333333210 0 00000000 0000 00000111100 01111 234444444322 133344 Q ss_pred HHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceee Q lcl|Aclame:pro 363 YFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRV 442 (518) Q Consensus 363 ~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v 442 (518) .+.+++ ..+| ...+. .++++|||+...+.++..+....+...++.++.++++.+.+- .+....+....+.++ T Consensus 354 ~l~~qm-~~~G--a~l~~-~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~A~w----~g~~~~~~~~~~~~~ 425 (488) T protein:vir:96 354 KLFEQA-VKVG--ASLFT-QQSNETATGAAIRSGSSTASMATLGNNVEDTVRNMLRFIMRY----FEGTNLYVNPDELVF 425 (488) T ss_pred HHHHHH-HHHh--Hhhcc-CCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCCcCccceEE Confidence 444333 2222 22333 334589999999999999999999999999998887655432 221111112222333 Q ss_pred E--EEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHc------CCCCHHHHHHHHHHHHHhccccC Q lcl|Aclame:pro 443 I--IEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH------PKWEDEEIQAEVKRIYLENAIGE 503 (518) Q Consensus 443 ~--v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~------~~~~eeea~eev~rI~~E~~~~~ 503 (518) + -+|.... .| .+.++.+.++..+|.+|.+++++.+- |+.+. ++|.+||+++ +..+ T Consensus 426 ~in~dF~~~~-ld-~~~~~al~~~~~~G~Is~~t~~~~L~~~gvl~~d~~~---e~~~~~ie~~-g~~~ 488 (488) T protein:vir:96 426 KLNRDYFDVE-VN-PQMLQVAYAAMMEGNLPQVSWFELLKRARVVRGDMSK---EEFDEHIAEL-GFGM 488 (488) T ss_pred EeccCCCCcc-CC-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCcCCccCCH---HHHHHHHhhc-CCCC Confidence 3 3333322 23 44677788899999999999876652 33343 4566666654 2222 No 100 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.10 E-value=5.8e-10 Score=71.20 Aligned_cols=427 Identities=10% Similarity=-0.016 Sum_probs=187.7 Q ss_pred CCc------CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccc--cceecCchHHHH Q lcl|Aclame:pro 1 MGV------WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVH--DKLMNSGTGNEI 72 (518) Q Consensus 1 ~~~------~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~l~~~i 72 (518) ++. .|.|.. .++ .+.-+..+. + ......+.++|..+..+ +.+ .-+....+++.| T Consensus 58 ~~~~~~~~~~~a~d~--------~~~--~~~~~~~~~----~---~~~~~~~~~~~~~~~~~-~~~l~a~Y~~~~l~r~i 119 (537) T protein:vir:10 58 MPKVDGSHPDMAMDG--------LDV--EGGTFSAYA----N---PNLSEGLVLWYAQQAFI-GHQMCALIATHWLVNKA 119 (537) T ss_pred cccccccccchhccc--------ccc--chhhhhhhc----c---ccccchhhhhccccCCc-cHHHHHHHHhCchhhhh Confidence 111 111111 110 000000000 0 00000001111111000 000 011234689999 Q ss_pred HHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE--CCeEEEEEEcCCe Q lcl|Aclame:pro 73 VVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL--NGRPSISVHSSSQ 150 (518) Q Consensus 73 ~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d--~~~i~i~~v~ad~ 150 (518) |+..|+.++.+...|+..+.+..+++. .+.|+..++.-+++..+.+++..+-..|++++-+.+. +++..-.-+..+. T Consensus 120 Vd~~A~d~~r~~~~i~~~~~~~~~~~~-~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~ 198 (537) T protein:vir:10 120 CSQMPRDAMRKGYKIISDDGNELDPKD-AKFIDRYDRAFNIKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDG 198 (537) T ss_pred hhhhhHHhhcCCceeecCCcccccHHH-HHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEeecCcCCccccccccccc Confidence 999999999998888765544433333 4567777777789999999999988889888776553 2221100000110 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) + ..|.+..+..++..-.. .+..-+... +-....+ |.. +.|.-.+ T Consensus 199 i----~kg~~k~l~vidp~~~~----~~~~~~~~~----dp~sp~f--g~P--~~y~v~g-------------------- 242 (537) T protein:vir:10 199 V----MPGAYKGIVQIDPYWCA----PLLDAQASS----NPVSMHF--YEP--TYWLING-------------------- 242 (537) T ss_pred c----cccceeEEEEechhhcc----cccchhhhc----cCCcccc--CCc--eeeeecC-------------------- Confidence 0 01111111111100000 000000000 0000000 000 0011000 Q ss_pred cccCcccce-eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHS-VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~-~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~ 309 (518) ..+.+..+ +..|.+.|- +.+ ..++. +|+|++..+.+.++..+.+-.....-+.....+++--+. +... T Consensus 243 -~~iH~SRli~f~g~~~p~--~~~--~~~~~-----~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~-~~~l 311 (537) T protein:vir:10 243 -KKYHRSHLAIYINDEVVD--FLK--PSYIY-----GGVPLPQQIMERVYAAERTANEGPMLAMTKRQTVLKVDA-AQVL 311 (537) T ss_pred -eEecceeEEEecCCCCch--hhh--cccCc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeech-HHhh Confidence 00111111 112221111 111 12222 499999999999999998887777666555555542211 1111 Q ss_pred CCCCccccccCCCcch---hheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCcc Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDE---DYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNRE 385 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~---~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~ 385 (518) .+... +.... ..++...+.+-. +.....++.++.++- -.-..++.+.+.+...+|++.-.| |....+ T Consensus 312 ~~~~~------~~~r~~~~~~~r~n~g~~~i-d~e~e~~e~~~~~ls--gl~~~l~~~~~~iAa~~~IP~t~L~G~sp~G 382 (537) T protein:vir:10 312 ANKQQ------FDETMSWWTATRDNYQVRVV-DKDNEDVVQIDTTLN--DLDKVIMNQYQLVCAIARTPAPKMLGTVPTG 382 (537) T ss_pred cCHHH------HHHHHHHHHhhcCCcceeEe-cCCCceeEEEeccCC--CHHHHHHHHHHHHHhhhCCCceeeccCCccc Confidence 11100 00000 011111111111 112244555554333 345566777777888888877644 543222 Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH---- Q lcl|Aclame:pro 386 --VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS---- 459 (518) Q Consensus 386 --~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~---- 459 (518) -|+.+ ..+-.|.+++.+|..++..|+.++..++... .+ .+.+++|.|++-...|+.++++ T Consensus 383 lnatGe~---D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~-------~~----~~~~~~i~f~pL~~~s~kEkAei~~~ 448 (537) T protein:vir:10 383 FNSTGDY---EEASYHEECESTQDDMRPLIDRHHQLVCRSH-------LR----KRIRVKVEFPPMDAPKESERADTFLK 448 (537) T ss_pred cccchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CC----CCcceEEEeCCCCCCCHHHHHHHHHH Confidence 23433 3344677778888778888888776665432 11 1236999999999999888765 Q ss_pred ---HHHHHHhCCCCCHHHHHHHHc-----------CCCCHHHHHHHHHHHHHhcccc-CCCCchhccCcCCCCC Q lcl|Aclame:pro 460 ---TLNNMNSALAMSVEEKVKLIH-----------PKWEDEEIQAEVKRIYLENAIG-EVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ---~~~~~~~aG~~S~~~~v~~~~-----------~~~~eeea~eev~rI~~E~~~~-~~~dp~~~~~~~~~gG 518 (518) +.++++++|+|+..++..++- +..+++.++ + ..+.+|.... ..+++...++..+... T Consensus 449 ~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (537) T protein:vir:10 449 KMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAE-D-IDVDDEGKPVRIIEDQPAPSEMFGATS 520 (537) T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhh-c-ccCCccCCcCCCCCCCCCccccCCCCc Confidence 488889999999988776652 111222211 1 1111111110 0111111011100000 No 101 >protein:vir:77597 Length: 725 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063735;genbank:gi:51236726;genbank:GeneID:2944241 Probab=99.00 E-value=6.7e-09 Score=65.38 Aligned_cols=474 Identities=8% Similarity=-0.059 Sum_probs=230.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHh-------hccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLP-------LVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIV 73 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~-------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~ 73 (518) |-=--..-+.++.||.- +.+.-+.|+. .|.|++|.-....+.+ .+ .+..+|+-+.++ T Consensus 1 m~d~~~~~~~~~~~~~~-----~~~~~~~~r~~a~~d~~fy~G~Qw~~~~~~~l~---~q--------~rp~~N~i~~~i 64 (725) T protein:vir:77 1 MADNENRLESILSRFDA-----DWTASDEARREAKNDLFFSRVSQWDDWLSQYTT---LQ--------YRGQFDVVRPVV 64 (725) T ss_pred CCchHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHhhCCCCCCHHHHHHHH---hc--------CCCccccHHHHH Confidence 32211222334555531 2222233332 3333333221111111 11 122457777778 Q ss_pred HHHHHHHcCCcceEEeccccccchHHHHH----HHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-------CCeEE Q lcl|Aclame:pro 74 VVAAEYISGKPLSIDVTGVNGSKDENLTK----QLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-------NGRPS 142 (518) Q Consensus 74 ~~~A~ll~~e~~~i~v~~~~~~~d~~~~~----~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-------~~~i~ 142 (518) +.+...--+-.+.+.|.+.+. +|+.+.+ .+..+...++......++...++..|-+++++..| ++.++ T Consensus 65 ~~v~g~~~~nr~d~~v~P~~~-~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~ 143 (725) T protein:vir:77 65 RKLVSEMRQNPIDVLYRPKDG-ARPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSNNQV 143 (725) T ss_pred HHHHhhHHhCCcceEEecCCc-cHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhcCcceeeeeecccCCCCCCCcee Confidence 877777777788999988665 4444444 45556667888888889999999999999998654 13344 Q ss_pred EEEE----cCCeeEEEEEc--CcEEEE--EEEEEEEec-------------------------------CceEEEEEEEE Q lcl|Aclame:pro 143 ISVH----SSSQFWIDFKN--NEPFRF--NFFEEIPTS-------------------------------NKADIYYLVES 183 (518) Q Consensus 143 i~~v----~ad~~~P~~~~--g~~~~~--~f~~~~~~~-------------------------------~~~~~y~~lE~ 183 (518) |..+ ++.++|.-+.. -++.++ +|......- +... .++.|+ T Consensus 144 i~~~~~~~~~~~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-vrv~E~ 222 (725) T protein:vir:77 144 IRREPIHSACSHVIWDSNSKLMDKSDARHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDT-IQIAEF 222 (725) T ss_pred eEEeecccChhhceeCchhhccChhhHHHHHHHhcCCHHHHHHHHhhCCcchhhcccccccccccccccCCCe-eEEEEE Confidence 4433 24444443221 111111 111110000 0000 112222 Q ss_pred eecccceeeeeeccceEEEEEEEeccC---Cccccccccccccccccc---------------------cccccCcccce Q lcl|Aclame:pro 184 REIKQWDKEGKKLSGGFVTYSVIKIDG---DKTTPISAERLPEQITSY---------------------LHTNDIQLNHS 239 (518) Q Consensus 184 he~~~~~~~~~~~~~~~I~n~ly~~~~---~~~v~~~~~~~~~~~~~~---------------------~~~~~~~~~~~ 239 (518) .+ ...+.-.+|...+ +..+.+. +..+..+ ..|.-+....+ T Consensus 223 ~~------------r~~~~~~~~~~~~~~tg~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~rv~~~~~~g~~~ 286 (725) T protein:vir:77 223 YE------------VVEKKETAFIYQDPVTGEPVSYF----KRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAV 286 (725) T ss_pred EE------------EEEEeeEEEEecCCCCcceeecC----hhhHHHHHHHhhhcCchhhhhcccceeeeeEeeecCcee Confidence 21 1111111222111 1111000 0000000 00000011111 Q ss_pred eec--CCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeeechhhhccCCCCCccc Q lcl|Aclame:pro 240 VSI--GLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKTKIAASERMFRKKVNKSTDK 316 (518) Q Consensus 240 ~~t--g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~ri~v~~~~l~~~~~~~~~~ 316 (518) +.. ..+.-.|.|+|.-+.-....++|++-+.+.+++|..+.+|...|...|.+- ..+.+..+....++.... T Consensus 287 l~~~~~~~~~~~P~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~----- 361 (725) T protein:vir:77 287 LKDKQLIAGEHIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEH----- 361 (725) T ss_pred eccCCcCCCCccceEEEeeeeeccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhccccccccchhhhhHHHH----- Confidence 111 111112334443222222346788889999999999999999999999884 455666666666532110 Q ss_pred cccCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHH Q lcl|Aclame:pro 317 EEWSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQ 395 (518) Q Consensus 317 ~~~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~ 395 (518) .+. .++...|...+... ..|......+..+++.=--..+++.++.....|...+|+....+|..++..++-.|.++. T Consensus 362 -~~~-~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~lp~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq 439 (725) T protein:vir:77 362 -MYD-GNDDYPYYLLNRTDENSGDLPTQPLAYYENPEVPQANAYMLEAATSAVKEVATLGVDTEAVNGGQVAFDTVNQLN 439 (725) T ss_pred -HHH-hccCCceecccccccCCCcccccCccccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCCCchhhHHHHHHHHH Confidence 000 01111111111111 111111223433333222357778888888889999999999999988777888888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------cCCC----------------------cCCceeeEEE Q lcl|Aclame:pro 396 DATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNK--------EKAI----------------------MRDEIRVIIE 445 (518) Q Consensus 396 ~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~--------~~~~----------------------~~~~~~v~v~ 445 (518) .............+..+.+.+-+.+|.+...++... .+.. ....++|.|+ T Consensus 440 ~qg~~~~~~~~Dnl~~~~~~~g~~lL~lI~~~~~~~rv~RI~~ed~~~~~v~in~~~~~~~~G~~~~~NDi~g~~Dv~v~ 519 (725) T protein:vir:77 440 MRADLETYVFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKDVQLMAEVVDLATGEKQVLNDIRGRYECYTD 519 (725) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecccccccccchhHhhhhhccceeeEEe Confidence 777777777888888888888888888766554111 0000 0012555555 Q ss_pred eCCCCCCCHHHHHHHHHHHHhCC--CCCHHHH-HHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 446 FPDPMSVNLNELSSTLNNMNSAL--AMSVEEK-VKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 446 f~D~i~~d~~~~~~~~~~~~~aG--~~S~~~~-v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) =+.+.+.-.++.+..++.+..+. .++.-.. +....+..+-+.+++.+++|+.........+|..- ....- T Consensus 520 ~~p~~~s~r~~~~~~l~qll~~~~~~~~~~~~~l~~~~~l~d~~~~~e~~erirkq~~~~~~~q~~~~---~e~q~ 592 (725) T protein:vir:77 520 VGPSFQSMKQQNRAEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETP---EEQQW 592 (725) T ss_pred eccchHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhccccchHHHHHHHHHHhhhhhhhccCCCCh---hhHHH Confidence 55544444556666666665432 2222111 22212223445566777777765544333333210 00000 No 102 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=98.98 E-value=5e-09 Score=66.08 Aligned_cols=440 Identities=9% Similarity=-0.010 Sum_probs=182.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchh-----hhhhhhhhhhhhhccCCC-Cccc--cceecCchHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQ-----KEWSKDSYLTSLWAQGYV-PTVH--DKLMNSGTGNEI 72 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~-----~~~~~~~~~~~~w~~~~~-~~~~--~~~~~~~l~~~i 72 (518) ++ .+++| +=+|.. +.+.-...+.+.. ..-.+.......|+.+.. ++-. .-+....+++.+ T Consensus 33 ~~-------~~~~~-~~~~~~----~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~~ 100 (532) T protein:vir:94 33 LG-------LATAH-EIDPTA----YSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGFPTLALLAQLPEYRTM 100 (532) T ss_pred hh-------hhhhh-hhcccc----cccccccccccccccccccCcccccccccccccccccchHHHHHHHHcCchhhhh Confidence 00 00000 000000 0000000000000 000000000011111100 0000 011134689999 Q ss_pred HHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeE Q lcl|Aclame:pro 73 VVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFW 152 (518) Q Consensus 73 ~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~ 152 (518) |+..|+-++.+..+|+..+.+..++ .....|+..++.-+++..+.+++..+-..|++++-+.++.......+-.+-..- T Consensus 101 Vd~~aed~~r~~~~i~~~~~~~~~~-~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~ 179 (532) T protein:vir:94 101 HETPADECVRAWGKITCSSKDELAA-DKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLS 179 (532) T ss_pred hccchHHHhhCCceEeeCCccccch-HHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEEEEeccCCcccccccccccc Confidence 9999999999998887655443332 233445555555578888888888888889888776654322111111110011 Q ss_pred EE-EEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 153 ID-FKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 153 P~-~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) |. -..|.+.++..++... +. --++.. .+-....+ |..+ .|....+ T Consensus 180 ~~~I~~g~~~~l~vld~~~------v~-p~~~~~---~dp~sp~f--g~P~--~y~v~~g-------------------- 225 (532) T protein:vir:94 180 PSFVQRGCLIGFATIEPMW------LS-PNAYNA---TDPTLPSF--YKPD--SWIATSG-------------------- 225 (532) T ss_pred ccccccceeeEEEeechhe------ec-cccccc---cccccccc--CCce--eEEEccC-------------------- Confidence 10 0112222222111100 00 000000 00000000 0000 0100000 Q ss_pred ccCcccce-eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCC Q lcl|Aclame:pro 232 NDIQLNHS-VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKV 310 (518) Q Consensus 232 ~~~~~~~~-~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~ 310 (518) ..+.+..+ +..|.+.|- +.+ ..++. +|+|++..+.+.++.++.+-.....=+......++.- .+..... T Consensus 226 ~~iH~SRli~f~g~~~p~--~~~--~~~~~-----~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~-~~a~~ls 295 (532) T protein:vir:94 226 KKIHSSRIHTVVGRPVGD--MLK--AAYSF-----RGVSISQLAMPYVDNWLRTRQSVSDTVKQFSMTNLAT-DMAQLLA 295 (532) T ss_pred eeeccceEEEecCCCchh--hhc--ccccc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeee-chHHhhc Confidence 01111111 112221111 111 11222 4999999999999999987766655444434333321 1111111 Q ss_pred CCCccccccCCCcch---hheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccc-cccCCccc Q lcl|Aclame:pro 311 NKSTDKEEWSMNVDE---DYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPAT-FNLGNREV 386 (518) Q Consensus 311 ~~~~~~~~~~~d~d~---~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~t-f~~d~~~~ 386 (518) .+... . +...- +.++...+.+- ...+...+++++.++- .....++.+.+.+...+|++.-- ||.+.++. T Consensus 296 ~~~~~--~--~~~r~~~~~~~~~n~g~~~-id~~~e~~e~~~~~ls--gl~~~l~~~~~~iAaa~~IP~t~LfG~sp~Gl 368 (532) T protein:vir:94 296 PGGAQ--S--LDARLQLFNLYRDNRNIGA-LDKGTEEIQQTNTPLS--GLDSLQAQSQEQMAAVSHIPLVKLLGITPNGL 368 (532) T ss_pred chhHH--H--HHHHHHHHHhhcCCccceE-EcCCCceeEEEecccC--CHHHHHHHHHHHHHhHhCCCeeeeecCCcccc Confidence 11100 0 00000 11111111111 1112244666654433 35667777888888899987654 35443332 Q ss_pred --hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH---- Q lcl|Aclame:pro 387 --KATEIWSLQDATVRKIEKKK-RLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS---- 459 (518) Q Consensus 387 --TAtEi~s~~~~t~~t~~~~~-~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~---- 459 (518) |+.+ ..+-.|..++.+| ..+...|+.++..++... .+. . +.+++|.|++-...|..++++ T Consensus 369 nstGe~---D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~-------~g~-~--~~d~~~~f~pL~~~s~kEkAei~~~ 435 (532) T protein:vir:94 369 NASSDG---EIRVWYDFIAGYQATNLTPLMEWIIDLIQLSE-------YGQ-I--DPGLAWEWSPLMELDDKELAEVRQL 435 (532) T ss_pred cccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCC-C--CCCceEEeCCCCCCCHHHHHHHHHH Confidence 3322 2344566777777 446777777776664432 111 2 236899999988888777655 Q ss_pred ---HHHHHHhCCCCCHHHHHHHHc--C------CCCHHHHHHHHHHHHHhcccc--CCCCchhccCcCCCCC Q lcl|Aclame:pro 460 ---TLNNMNSALAMSVEEKVKLIH--P------KWEDEEIQAEVKRIYLENAIG--EVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ---~~~~~~~aG~~S~~~~v~~~~--~------~~~eeea~eev~rI~~E~~~~--~~~dp~~~~~~~~~gG 518 (518) +.++++++|++|..+...++. | ...+++--++.+.+.+|.... .++++...+ +++.+. T Consensus 436 ~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 506 (532) T protein:vir:94 436 NASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQT-PNPQPD 506 (532) T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCCC-CCCCCC Confidence 457788899999988776652 1 111100001112222222111 111111111 111111 No 103 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=98.95 E-value=1.1e-08 Score=64.20 Aligned_cols=444 Identities=11% Similarity=0.006 Sum_probs=192.9 Q ss_pred chHHHHH-------------HHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHH Q lcl|Aclame:pro 5 SVMTRFI-------------KGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNE 71 (518) Q Consensus 5 ~~~~~~~-------------~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~ 71 (518) |||+..= ...|+|--.+. .+.. ...++-..-...-|.. -..+...-...-++++. T Consensus 1 m~~~~~~~~a~~~~~~~~~~~~~y~aa~~~~------~~~~-----~~~~s~d~~~~~~~~~-lr~RaRdl~rNn~~a~~ 68 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGASAYEGASGGH------RWQD-----IGDYGPDTAVASGIQT-LRARSHHNVRNNPWATN 68 (495) T ss_pred CCcccccccccchhhhhHHHhhhhhccccCc------ccCC-----CCCCChhHHHHHHHHH-HHHHHHHHHhcChHHHH Confidence 4433211 11232210000 0000 0000000000000000 00000011124568999 Q ss_pred HHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhh------cChHHHHHHHHHHHHhhCCEEEEEEEECC------ Q lcl|Aclame:pro 72 IVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRI------DNFDSKSVKIVELAGGSGVSAVKINILNG------ 139 (518) Q Consensus 72 i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d------n~f~~~~~~~~e~~~a~G~~~~k~~~d~~------ 139 (518) +++.+.+.+.+.-.+......+..-++.+++.++...++ .+|+......+...+..|.++++..+... T Consensus 69 av~~~~~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~ 148 (495) T protein:vir:10 69 AVATWVAAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSV 148 (495) T ss_pred HHHHHHHhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCcc Confidence 999999999997544433222211123334444444432 36777777778888888999888776532 Q ss_pred eEEEEEEcCCeeE-EE--E--EcCc-EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcc Q lcl|Aclame:pro 140 RPSISVHSSSQFW-ID--F--KNNE-PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKT 213 (518) Q Consensus 140 ~i~i~~v~ad~~~-P~--~--~~g~-~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~ 213 (518) ..++..+.||.+- |. . .+|. +...|-++ ..++- +-|.+++...+.. T Consensus 149 ~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d---~~Gr~-------------------------vaY~i~~~hpgd~ 200 (495) T protein:vir:10 149 PLQLQIIEPDMLASDIPDETLPSGGYVKGGIRFS---NGGKR-------------------------KAYCFYRNHPAES 200 (495) T ss_pred ceEEEEechhhcCCCCCCCCCCCCCEEEeceEEC---CCCce-------------------------EEEEEeecCCCcc Confidence 2589999999862 32 1 1232 23333221 11222 2233333333221 Q ss_pred ccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 214 TPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE 293 (518) Q Consensus 214 v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~ 293 (518) .... ... .+.-++.+. +.|+....+. ---|+|.|+.++. ++.+|.--+.-..--+ T Consensus 201 ~~~~-----~~~----~~~rvpA~~----------vlH~f~~r~g-----Q~RGis~la~i~~-l~~l~~y~dael~~a~ 255 (495) T protein:vir:10 201 SLIG-----DPV----DTVWIKAEH----------VLHVTVLTVR-----SDAGAPWFQLLLR-LNELDQYEDAELVRKK 255 (495) T ss_pred cccc-----ccc----ceeeechhh----------eEeccccCCC-----cccCcchhHHHHH-HHHhhHHHHHHHHHHH Confidence 1000 000 111111111 2233223332 2339999987654 6777665544322222 Q ss_pred h-ccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 294 K-TKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKS 372 (518) Q Consensus 294 ~-g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~ 372 (518) . +--..+|-... .....+..... ...+........+.......-.....|+.++|+=....|..-...+|+.|...+ T Consensus 256 i~A~~~~fi~~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaagl 333 (495) T protein:vir:10 256 TAALFAAFIQEAT-ADSTGGPTIGQ-PKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGY 333 (495) T ss_pred HhhhheeeeecCC-CccccccccCc-cccccCcccceecCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhc Confidence 2 22223331111 00000000000 000101011111111111111223458889988777888888888999999999 Q ss_pred CCCccccccCCccchHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHhhccccCCC---cCCceeeEEEeC Q lcl|Aclame:pro 373 GYNPATFNLGNREVKATEIWSLQDATVRKIEKKKR-LI-QNVYEQMLWDFLYLLTGGTNNKEKAI---MRDEIRVIIEFP 447 (518) Q Consensus 373 G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~-~~-~~~l~~li~~il~l~~~~~~~~~~~~---~~~~~~v~v~f~ 447 (518) |+|+..++-|-.+.+=..+++......+.+...|. .+ ...+..+.+..|+.+-. ......+ .....-..+.|- T Consensus 334 Gi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l--~G~i~~p~~~~~~~~~~~~~w~ 411 (495) T protein:vir:10 334 GITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVA--SGAVVIPDYLQRRRYYNRVSWR 411 (495) T ss_pred CCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCchhhhHhhhccccc Confidence 99999997664333222233333333333333332 22 22333333333333211 1111111 011111456664 Q ss_pred C--CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHhccccCCCCchhccCc--CCCCC Q lcl|Aclame:pro 448 D--PMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWED--EEIQAEVKRIYLENAIGEVPDPEAIGGM--ETKGG 518 (518) Q Consensus 448 D--~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~e--eea~eev~rI~~E~~~~~~~dp~~~~~~--~~~gG 518 (518) - -...|+...++....++.+|++|.++.++.+-.++.+ ++..+|.+++++ -+..-..+|-...+- ..+.. T Consensus 412 ~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~~~-~Gl~~~~~p~~~~~~~~~~~~~ 487 (495) T protein:vir:10 412 TPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGYDMEELFDMISDANQLIDE-YDLRLDSDPRYVNGSGAEQKSV 487 (495) T ss_pred cCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH-cCCCCCCCCCcCCCccCCCCCC Confidence 3 3467899999999999999999999999987433433 233333333332 222211222211110 00111 No 104 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=98.91 E-value=6.3e-10 Score=71.01 Aligned_cols=413 Identities=12% Similarity=0.105 Sum_probs=183.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCC-CccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYV-PTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~l~~~i~~~~A~l 79 (518) ||+.|.=+. |..-.. |+. . +.+-......+...+-++... .-...-+.+..+++.||+..|+- T Consensus 1 ~~~~m~~~~--~~~~~~--D~~--------~----~~~~~~~g~~~~~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed 64 (435) T protein:vir:79 1 MGVFMSDKV--KAITKE--DGY--------N----EIFGSKDGTFRPNAFYMQRAAFKALSQFYEEDGMARRIVDVIPEE 64 (435) T ss_pred CCccccccc--ccchhh--cch--------h----hhhcccccccccCcccCCcCCHHHHHHHHhcCchhhhhhccchHH Confidence 999986553 112211 211 0 000000000000000000000 00111233567899999999999 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcCc Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNE 159 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~ 159 (518) ++.+...| .+.+ +.++ ++..++.-+++..+.+++..+-..|++++-+.+.+++.. + -|+-..|. T Consensus 65 ~~r~g~~i--~g~~--~~~~----~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~------~--~Pl~~~g~ 128 (435) T protein:vir:79 65 MVTPGFKV--DGVK--NEKS----FKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKML------K--SPVKPGAQ 128 (435) T ss_pred hhcCCcee--cCCC--hHHH----HHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCc------c--cccccCCc Confidence 99987554 3321 2233 444444447888899999999999998887766443211 1 23322344 Q ss_pred EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce Q lcl|Aclame:pro 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) Q Consensus 160 ~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (518) +..+..++.... +-.++.. +-.... -|..+ .|.-.+...... ..+.+..+ T Consensus 129 i~~i~v~d~~~i-------~~~~~~~----dp~sp~--fg~P~--~y~v~~~~~~~~---------------~~iH~SRl 178 (435) T protein:vir:79 129 LEDIRVYDRYQI-------TIHERET----NARSVR--YGEPK--LYKISPGGDIPE---------------FFVHYSRI 178 (435) T ss_pred eeeEEeechhhc-------cchhhcc----CCcccc--cCcce--EEEEecCCCCCc---------------eEEcceeE Confidence 433322221100 0001100 000000 01111 122111110000 00111111 Q ss_pred -eecCCCcceEEEecCcccCccccCCCCCcchh-hhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcccc Q lcl|Aclame:pro 240 -VSIGLKSMGAYLINNSPSNTRYPHLNLGESDL-SQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKE 317 (518) Q Consensus 240 -~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~-~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~ 317 (518) +..|.+.|. .. ....+.+|.|++ ..+.+.+...+.+......=+...+.+++--..+-....++..... T Consensus 179 i~~~g~~~p~---~~------~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~ 249 (435) T protein:vir:79 179 CIIDGERVSN---EK------RRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQAVWKARDLALMCDDEEGRYA 249 (435) T ss_pred EEecCCcchh---hh------ccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHhhcCccchHH Confidence 122222111 11 112356799988 6788999999988887776665444444322222111111111100 Q ss_pred ccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccchHH--HHHHH Q lcl|Aclame:pro 318 EWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREVKAT--EIWSL 394 (518) Q Consensus 318 ~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~TAt--Ei~s~ 394 (518) ....-.....++..++.... .+....++.++.++- .....++.+++.+...+|++.-.+ |...+...|| +- T Consensus 250 ~~~r~~~~~~~~~~~~~~~i-~~~~e~~e~~~~~ls--gl~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d--- 323 (435) T protein:vir:79 250 ARLRLAQVDDESGVGKAIGI-DATDEEYEVLNSDVS--GVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTA--- 323 (435) T ss_pred HHHHHHHHHHhcCCCCceeE-ecCCcceEEEecccC--CHHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHH--- Confidence 00000000011111111111 122334666665543 456677788888999999987664 5444443333 32 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH-------HHHHHh Q lcl|Aclame:pro 395 QDATVRKIEKKKR-LIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST-------LNNMNS 466 (518) Q Consensus 395 ~~~t~~t~~~~~~-~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~-------~~~~~~ 466 (518) .+-.|.+++.+|. .++..|..++..++. . .+++|.|++-...|+.++++. ++++++ T Consensus 324 ~~~yyd~i~~~Qe~~l~p~l~~l~~li~~----------s------~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~ 387 (435) T protein:vir:79 324 LETFYKLIDRKRVEDYKPILEFLLPFMIS----------E------TEWSIEFEPLSVPSDKDKAEIMAKNVESVVKLKA 387 (435) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------C------CCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh Confidence 3334666666663 355556655544321 0 268899999999998766554 445566 Q ss_pred CCCCCHHHHHHHHc---CC--CCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIH---PK--WEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~---~~--~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+++.+++...+- +. ..++. ...| ++.....++ -..+|| T Consensus 388 ~g~i~~~e~r~~L~~~~~~~~~~~~~----~~~~--~~~~d~~~~------~~~e~g 432 (435) T protein:vir:79 388 EQAINLKETRDTLRSICPDLKIMDND----NIEL--PEPEDLDPE------PGQEGG 432 (435) T ss_pred cCCCCHHHHHHHHHHhccccCCCCcc----cccC--CccccCCCC------CCCCCC Confidence 67777666554431 10 11100 0011 011111111 123444 No 105 >protein:vir:172 Length: 708 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112077;genbank:gi:13559867;genbank:GeneID:920970 Probab=98.90 E-value=1.7e-08 Score=63.16 Aligned_cols=498 Identities=8% Similarity=0.001 Sum_probs=217.6 Q ss_pred cCchHHHH-------HHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHH Q lcl|Aclame:pro 3 VWSVMTRF-------IKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVV 75 (518) Q Consensus 3 ~~~~~~~~-------~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~ 75 (518) ....+.+. +++|+..+.+-+.--+.......|.|+++.-......+. + ..-..+-.++.|+-+.+++. T Consensus 1 ma~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~d~~f~~y~G~Qw~~~~~~~l~~---~--~q~~~rP~~~~N~i~~~i~~ 75 (708) T protein:vir:17 1 MAETLEKKHERIMLRFDRAYSPQQEVREKCIEATRFARVPGGQWEGATAAGTKL---D--EQFEKYPKFEINKVATELNR 75 (708) T ss_pred CchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCCHHHHHHHHh---h--hhhcCCCceEEcchHHHHHH Confidence 22222222 344443332211111111111223333222111111100 0 00012345678998888888 Q ss_pred HHHHHcCCcceEEeccccccchHH----HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE----------CCeE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDEN----LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL----------NGRP 141 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~----~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d----------~~~i 141 (518) ....--.-.+.+.|...+...|.. ++..+..+.+.|+.......+...+...|-+++++..+ +.++ T Consensus 76 v~g~e~~nr~d~~v~p~~~~~d~~~Ae~l~~l~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~~~~d~~~e~d~~~~~~~i 155 (708) T protein:vir:17 76 IIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDDRQRI 155 (708) T ss_pred HHhhHhhCCcceEEecCCCcchHHHHHHHHHHHHHHHHhcCchhHHhHHHHHhhhcccceeeeeecccccCCCCCCcccc Confidence 888877777889988775443434 44456667778888888999999999999999988532 1245 Q ss_pred EEEEE--cCCeeEEEEEc--CcEEEE--EEEEEEEe-----------------------c-----CceEEEEEEEEeecc Q lcl|Aclame:pro 142 SISVH--SSSQFWIDFKN--NEPFRF--NFFEEIPT-----------------------S-----NKADIYYLVESREIK 187 (518) Q Consensus 142 ~i~~v--~ad~~~P~~~~--g~~~~~--~f~~~~~~-----------------------~-----~~~~~y~~lE~he~~ 187 (518) .|..+ ++..++.-+.. -++.+| +|...... . +.+. .++.|+.+.. T Consensus 156 ~i~~~~~~~~~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~~~~~~~d~-vrv~e~~~r~ 234 (708) T protein:vir:17 156 AIEPIYDPSRSVWFDPDAKKYDKSDALWAFCMYSLSPEKYEAEYGKKPPASLDVTSMTSWEYDWFDADV-IYIAKYYEVR 234 (708) T ss_pred ceEeeccchhheecCccccccChhhhhhhhhhccCCHHHHHHhCccccchhhhhhhhccccccccCCCe-EEEEEEEEEe Confidence 55444 34456543221 122222 22111000 0 0011 1122222110 Q ss_pred cceeee--eec-cceEEEEEEEeccCCcccc------cccccccccccc-ccccccCcccceee--cCCCcceEEEecCc Q lcl|Aclame:pro 188 QWDKEG--KKL-SGGFVTYSVIKIDGDKTTP------ISAERLPEQITS-YLHTNDIQLNHSVS--IGLKSMGAYLINNS 255 (518) Q Consensus 188 ~~~~~~--~~~-~~~~I~n~ly~~~~~~~v~------~~~~~~~~~~~~-~~~~~~~~~~~~~~--tg~~~~~~~~~~n~ 255 (518) .....+ ..+ .+|.| ..|.++....+. +........... ...|..+....++. ...+.-.|.|+|.. T Consensus 235 ~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~l~~~~~~p~~~fP~vP~~ 312 (708) T protein:vir:17 235 KESVDVISYRHPITGEI--ATYDSDQVEDIEDELAIAGFQEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEHIPLIPVY 312 (708) T ss_pred eeeeEEEEEecCccCce--eeeCccchhhHHHHHHhcccccceeeeeeEEEEEEEeecccccccCCCCCCCCccceEEEe Confidence 000000 000 00000 011111100000 000000000000 00011101111111 11112223334432 Q ss_pred ccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeeechhhhccCCCCCccccccCCCcchhheeeecCC Q lcl|Aclame:pro 256 PSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGT 334 (518) Q Consensus 256 ~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~ 334 (518) +.-..-.+.|---+.+.++++..+.+|...|.+.|-+- .++...+++.+.+.....--. .+..+...|...+.. T Consensus 313 g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~a~~g~~~~~~-----~~~~~~~~~~~~~~~ 387 (708) T protein:vir:17 313 GKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWE-----ARNKKRPAFLPLREV 387 (708) T ss_pred cccccccCCCcccchhhhchhHHHHHHHHHHHHHHHHHhcCCcceeechhhhhhhHHhhh-----hcccchhhhhhhhcc Confidence 21111123443346788999999999999999999884 566777778777643211000 011111111111110 Q ss_pred cCCC---CCCCccceEec-ccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 335 LDAG---AKLNDMIQFMQ-GDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQ 410 (518) Q Consensus 335 ~~~~---~~~~~~i~~~~-~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~ 410 (518) .+.. ..+...+..++ |.+. ..+++.++.....|...+|++...+|..+ +.++-.|.+...............+. T Consensus 388 ~~~~g~v~~~a~~~~~~~~~~~~-~~~~~llq~~~~~i~~~tGi~d~~~G~~s-n~SG~Ai~~rq~qg~~~~~~~~Dnl~ 465 (708) T protein:vir:17 388 RDKYGNIIAGATPAGYTQPAVMN-QALAALLQQTSADIQEVTGGSQAMQQMPS-NIAQETVNNLMNRADMASFIYLDNMA 465 (708) T ss_pred CCcccccccccCCcccCCCcccc-HHHHHHHHHHHHHHHHhcCCChHHccCcc-chHHHHHHHHHHHHHHHHHHHHHHHH Confidence 0000 00011122223 3443 58888899999999999999999888644 35677777777666666666777777 Q ss_pred HHHHHHHHHHHHHHHHhhcccc-------------------------------CCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 411 NVYEQMLWDFLYLLTGGTNNKE-------------------------------KAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 411 ~~l~~li~~il~l~~~~~~~~~-------------------------------~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) .+.+.+-+.+|.+...++.... +......++|.|+=..+.+.-.++..+ T Consensus 466 ~~~~~~g~~lL~lI~~~y~~~R~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~~Dv~v~~~p~~~t~r~~~~~ 545 (708) T protein:vir:17 466 KSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRDATVS 545 (708) T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecceeccCCCccceeeccceeeeeeEEEecccCchhHHHHHHH Confidence 7777777777777665541110 011112345555444444444556666 Q ss_pred HHHHHHhCCC-CCHHHH-----HHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcC-------CCCC Q lcl|Aclame:pro 460 TLNNMNSALA-MSVEEK-----VKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGME-------TKGG 518 (518) Q Consensus 460 ~~~~~~~aG~-~S~~~~-----v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~-------~~gG 518 (518) .++.+..+.. +-..+. +.. +.++ .-+++.+++|+.......+.+|..-.... .... T Consensus 546 ~l~qll~~~~~~~~~~~~~~~l~l~-~~D~--p~~~ei~e~ir~~~~~~~~~~~~~~e~~q~~~q~qq~~q~ 614 (708) T protein:vir:17 546 VLTNVLSSMLPADPMRPAIQGIILD-NIDG--EGLDDFKEYNRNQLLISGIAKPRNEKEQQIVQQAQMAAQS 614 (708) T ss_pred HHHHHHHhcCCccchhHHHHHHHHH-hcCC--CChHHHHHHHHHHhhccccccCcchhhHHHHHHHHHHHHH Confidence 6666654332 111111 111 1122 11233344444332222111111000000 0000 No 106 >protein:vir:95821 Length: 763 # NCBI annotation: 94 kDa protein # Family: family:all:1548 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950537;genbank:gi:119952228;genbank:GeneID:5075648 Probab=98.89 E-value=2e-08 Score=62.83 Aligned_cols=477 Identities=12% Similarity=-0.006 Sum_probs=194.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhh------hhh--hhccCCCCccc-cceecCchHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSY------LTS--LWAQGYVPTVH-DKLMNSGTGNE 71 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~------~~~--~w~~~~~~~~~-~~~~~~~l~~~ 71 (518) --+....+. +-| ++..-+.++.+.+. +++.|+...+ ... +-|...++..+ +.+++.+.-.. T Consensus 12 ~~~~~~~~~--~~~----~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grs~vv~~~v~~ 81 (763) T protein:vir:95 12 PDPSQATKL--TSW----KNELSLQALKADLD----AAKPSHTAMMIKVKEWNDLMRIEGKAKPPKVKGRSQVQPKLVRR 81 (763) T ss_pred ccccchhcC--CCC----CChHHHHHHHHHHH----hhhcchhHHHHHHHHHHHhhhccccCcccccCCCccccCHHHHH Confidence 011111111 122 11111122222211 1111111000 001 11222233332 34455443333 Q ss_pred HHH-HHHHH---HcCCcceEEeccccccchH---HHHHHHHHHHh-hcChHHHHHHHHHHHHhhCCEEEEEEEEC----- Q lcl|Aclame:pro 72 IVV-VAAEY---ISGKPLSIDVTGVNGSKDE---NLTKQLKEALR-IDNFDSKSVKIVELAGGSGVSAVKINILN----- 138 (518) Q Consensus 72 i~~-~~A~l---l~~e~~~i~v~~~~~~~d~---~~~~~l~~vl~-dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----- 138 (518) .++ .+++| .++-..-|++.+....|.+ ..+.+++-++. .|+=...+..++..++..|.+++|+||+. T Consensus 82 ~ve~~~~~l~~~f~~~~~~~~~~P~~~~D~~~A~q~t~~~n~~~~~~~~~~~~~~~~~~~~l~~~~gv~k~~W~~~~~~~ 161 (763) T protein:vir:95 82 QAEWRYSALTEPFLGSNKLFKVTPVTWEDVQGARQNELVLNYQFRTKLNRVSFIDNYVRSVVDDGTGIVRVGWNREIRKE 161 (763) T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCcchHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhcCcceEEEeeeeeeeee Confidence 222 23333 3344444566655544432 33445666443 44445668899999999999999999951 Q ss_pred --------------------------------------------------------------------------CeEEEE Q lcl|Aclame:pro 139 --------------------------------------------------------------------------GRPSIS 144 (518) Q Consensus 139 --------------------------------------------------------------------------~~i~i~ 144 (518) ++|+|+ T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~ie 241 (763) T protein:vir:95 162 KQEVPVFSLFPIQTQEQADALQQALQLRTDNPRGYEENVDEAIKESVRFFDETGQATYAVQTGTTTTEVEVPLANHPTVE 241 (763) T ss_pred eeeehhhhhccccchhHHHHHHHHHHhhhhhhccccccccchhhhhhhhccccCcceeeecccceeEEEEEEecCceEEE Confidence 234666 Q ss_pred EEcCCeeEEEEE-cCcEEE--EEEEEEEEe-cCc---eEEEEEEE-Eeecccceeeeee---------c-----cceEEE Q lcl|Aclame:pro 145 VHSSSQFWIDFK-NNEPFR--FNFFEEIPT-SNK---ADIYYLVE-SREIKQWDKEGKK---------L-----SGGFVT 202 (518) Q Consensus 145 ~v~ad~~~P~~~-~g~~~~--~~f~~~~~~-~~~---~~~y~~lE-~he~~~~~~~~~~---------~-----~~~~I~ 202 (518) .|++..|++.-+ .+++-+ .++.+.... .+- +..|..++ .-+.......... . ..-... T Consensus 242 ~V~p~d~~iDp~a~sD~~Da~~~~~~~~~t~~dL~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~V~v 321 (763) T protein:vir:95 242 MLNPENIIIDPSCQGDINKAMFAIVSFETCKADLLKEKDRYHNLNKIDWQSSAPVNEPDHATTTPQEFQISDPMRKRVVA 321 (763) T ss_pred eecHHHheecCCCCCchhhCceEeeEEeccHHHHHhccCCccccchhcchhccccccccccccchhhccCCCcccceEEE Confidence 677777776321 122222 222221111 110 00111100 0000000000000 0 001112 Q ss_pred EEEEeccCCcccccccccccccccccccccc--CcccceeecC-CCcceEEEecCcccCccccCCCCCcchhhhhHHHHH Q lcl|Aclame:pro 203 YSVIKIDGDKTTPISAERLPEQITSYLHTND--IQLNHSVSIG-LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLF 279 (518) Q Consensus 203 n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~tg-~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~ 279 (518) ++.|..-+-..... .+. ....+.+ +......+.. ...||+.+.+.+ ..++.+|.|+++.+++.++ T Consensus 322 ~E~y~~~d~~gdg~-----~~~--~~v~~~g~~iL~~~~~p~~~~~~PFv~~~~~p-----~~~~~~G~gi~~~~~d~Qr 389 (763) T protein:vir:95 322 YEYWGFWDIEGNGV-----LEP--IVATWIGSTLIRLEKNPYPDGKLPFVLIPYMP-----VKRDMYGEPDAELLGDNQA 389 (763) T ss_pred EEeeeeeccCCcce-----eEE--EEEEEEcCeeeecccccccCCCcCEEEeccee-----ecCcccCCchHHHhhHHHH Confidence 23332211000000 000 0000111 0000000111 124565443332 3467889999999999999 Q ss_pred HHHHHHHHHHHHHH-hccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHH Q lcl|Aclame:pro 280 AVDYFFTVYMREGE-KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYR 358 (518) Q Consensus 280 ~lD~~~s~~~~e~~-~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~ 358 (518) .+|..+++..+-+. .+++++.|+++.+..... .. +.+...+...- +......++..++.---.... T Consensus 390 ~~N~~~~~~~d~l~~~~~~~~~v~~gav~~~d~-----~~--~~pg~v~~v~~------g~~~~~~~~~~~~p~~~~~~~ 456 (763) T protein:vir:95 390 VLGAVMRGMIDLLGRSANGQRGMPKGMLDALNS-----RR--YREGEDYEYNP------TQNPAQMIIEHKFPELPQSAL 456 (763) T ss_pred HHHHHHHHHHHHHHhhcCCcEEeecccccchhh-----hc--ccCCceEEeeC------CCChhhhcccccCCCCcchHH Confidence 99999999999886 477889998877643211 00 11111111111 111112222222111123445 Q ss_pred HHHHHHHHHHHHHhCCCccccccCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---- Q lcl|Aclame:pro 359 ETMEYFAQKAVSKSGYNPATFNLGNR--EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKE---- 432 (518) Q Consensus 359 ~~i~~~l~~i~~~~G~s~~tf~~d~~--~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~---- 432 (518) ..++.+-..+...+|++....|+++. +.|||+|....+..-.....+.+.+..+++.+.+.++.+...++.... T Consensus 457 ~~l~~~~~~~e~~TGv~~~~~G~~~~~~~~tat~v~~l~qa~~~~~~~~~r~~~~~~k~l~~~~l~Li~q~~d~~rviRI 536 (763) T protein:vir:95 457 TMATLQNQEAESLTGVKAFAGGVTGESYGDVAAGIRGVLDAASKREMAILRRLAKGMSEIGNKIIAMNAVFLAEHEVVRI 536 (763) T ss_pred HHHHHHHHHHHHhhCcchhhcCcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEE Confidence 55555555678889999888887543 368888766555544445566677777889999999988776543210 Q ss_pred -CC--Cc------CCceeeEEEeCCCCCCCHHHHHHHHHHHHh-C-CCCCHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 433 -KA--IM------RDEIRVIIEFPDPMSVNLNELSSTLNNMNS-A-LAMSVEEKVKLIHPKW-EDEEIQAEVKRIYLENA 500 (518) Q Consensus 433 -~~--~~------~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~-a-G~~S~~~~v~~~~~~~-~eeea~eev~rI~~E~~ 500 (518) +. .. ..+++|.|+-+ ...-..+.++.++.+.. . ..+.+.... .+.... +-....+.+.+++.-+. T Consensus 537 ~g~e~v~v~~~~~~~~~DV~V~~~--~as~~~q~~~~l~~ll~~l~~~~~~~~~~-~il~~~~d~~~~~~~~~~lr~~q~ 613 (763) T protein:vir:95 537 TNEEFVTIKREDLKGNFDLEVDIS--TAEVDNQKSQDLGFMLQTIGPNVDQQITL-NILAEIADLKRMPKLAHDLRTWQP 613 (763) T ss_pred eCCccccccHHHhcCCcceEEecc--cchHHHHHHHHHHHHHHHhccccChHHHH-HHHHHHHhhhchhhhHHHHHhcCC Confidence 00 01 11344444333 21112233333333322 1 123321111 110000 00011111222222211 Q ss_pred ccCCCCchhccC----cCCCCC Q lcl|Aclame:pro 501 IGEVPDPEAIGG----METKGG 518 (518) Q Consensus 501 ~~~~~dp~~~~~----~~~~gG 518 (518) .++|..-.. ...... T Consensus 614 ---~~d~~~q~qaqle~~~~q~ 632 (763) T protein:vir:95 614 ---QPDPVQEQLKQLAVEKAQL 632 (763) T ss_pred ---CccchhhhHHHHHHHHHHH Confidence 112210000 000000 No 107 >protein:vir:100920 Length: 725 # NCBI annotation: Gp1 # Family: family:all:487 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006406;genbank:gi:46358698;genbank:GeneID:2777070 Probab=98.88 E-value=2.1e-08 Score=62.68 Aligned_cols=490 Identities=7% Similarity=-0.083 Sum_probs=234.6 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHH-------hhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYL-------PLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIV 73 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~ 73 (518) |-=.-.+-+.++.||.- +.+.-+.|+ ..|.++++.-....+. -.+. +..+|+-+.++ T Consensus 1 m~d~~~~~~~~~~~~~~-----~~~~~~~~R~~a~~d~~fy~G~QW~~~~~~~l---~~q~--------rp~~N~i~~~v 64 (725) T protein:vir:10 1 MADNENRLESILSRFDA-----DWTASDEARREAKNDLFFSRVSQWDDWLSQYT---TLQY--------RGQFDVVRPVV 64 (725) T ss_pred CCchHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHH---HhcC--------CCcccchHHHH Confidence 33332333444666631 222223333 3344443322221111 1111 12458888888 Q ss_pred HHHHHHHcCCcceEEeccccccchHHHHHH----HHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE---C----CeEE Q lcl|Aclame:pro 74 VVAAEYISGKPLSIDVTGVNGSKDENLTKQ----LKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL---N----GRPS 142 (518) Q Consensus 74 ~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~----l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d---~----~~i~ 142 (518) +.+...--+-.+.+.|.+.+. +|..+.+. +..+...++......++.+.++..|-+++++..| + +.+. T Consensus 65 ~~v~g~e~~nr~d~~v~p~~~-~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~ 143 (725) T protein:vir:10 65 RKLVSEMRQNPIDVLYRPKDG-ASPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSNNQV 143 (725) T ss_pred HHHHhhHHhCCcceEEecCCc-chHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHhhcCcceeeeeccccCCCCCCCcee Confidence 888888777788999988665 44444444 5556667788888889999999999999998644 1 2344 Q ss_pred EEEE----cCCeeEEEEE--cCcEEE--EEEEEEEEec---------CceEEEEEEEEeec-----c----cceeeeeec Q lcl|Aclame:pro 143 ISVH----SSSQFWIDFK--NNEPFR--FNFFEEIPTS---------NKADIYYLVESREI-----K----QWDKEGKKL 196 (518) Q Consensus 143 i~~v----~ad~~~P~~~--~g~~~~--~~f~~~~~~~---------~~~~~y~~lE~he~-----~----~~~~~~~~~ 196 (518) |..+ ++.++|.-+. ..++.+ .+|..+.... -....-...++-.. . ......+.+ T Consensus 144 i~~~~i~~~~~~v~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vrv~E~~ 223 (725) T protein:vir:10 144 IRREPIHSACSHVIWDSNSKLMDKSDARHCTVIHSMSQNGWDDFAEKYDLDADNIPSFQNPNDWVFPWLTQDTIQIAEFY 223 (725) T ss_pred eeeeecccCHhHcccCchhhccChhhhhhhhhhccCCHHHHHHHHHhCCCcccccccccccccccccccCCCeEEEEEEE Confidence 4433 3444544321 122222 2222221100 00000000000000 0 000001111 Q ss_pred cceEEEEEEEeccC---Ccccccccccccccccc-----------------ccccccCcccceeec--CCCcceEEEecC Q lcl|Aclame:pro 197 SGGFVTYSVIKIDG---DKTTPISAERLPEQITS-----------------YLHTNDIQLNHSVSI--GLKSMGAYLINN 254 (518) Q Consensus 197 ~~~~I~n~ly~~~~---~~~v~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~t--g~~~~~~~~~~n 254 (518) ....+.-.+|...+ +..+.+....+...... ...|.-+....++.. ..+.-.|.|+|. T Consensus 224 ~r~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~~fP~vP~ 303 (725) T protein:vir:10 224 EVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVPV 303 (725) T ss_pred EEEEEeeEEEEeccCCCCceeecchhhhHHHHHHhhcccchhhhhccceeeEEEEEeecchhhhcCCCCCCCCceeEEEE Confidence 11111112222111 11110000000000000 000000000011111 111112344443 Q ss_pred cccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeeechhhhccCCCCCccccccCCCcchhheeeecC Q lcl|Aclame:pro 255 SPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKG 333 (518) Q Consensus 255 ~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~ 333 (518) -+.-....++|++-+.+.+++|..+.+|...|...|-+- .++.+..++...+..... .+. .++...+...+. T Consensus 304 ~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~e~------~~~-~~~~~~~~~~~~ 376 (725) T protein:vir:10 304 FGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEH------MYD-GNDDYPYYLLNR 376 (725) T ss_pred EeeeeccCCcceeeeeeccchhHHHHHHHHHHHHHHHHHhcCCccccccHhhhhHHHH------HHh-ccCCceeeeccc Confidence 222122346788889999999999999999999999984 577777777766642110 011 111122221111 Q ss_pred Cc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 334 TL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNV 412 (518) Q Consensus 334 ~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~ 412 (518) .. ..|.-....++.+.+.=-..+++..++.....|...+|++...+|..++..++-.|.++..............+..+ T Consensus 377 ~~~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~l~~~~Dnl~~~ 456 (725) T protein:vir:10 377 TDENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRADLETYVFQDNLATA 456 (725) T ss_pred ccccCcccccccCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11 11111123444444333345788899999889999999999999988777778788888777776767777888888 Q ss_pred HHHHHHHHHHHHHHhhcccc--------C--------C--------------CcCCceeeEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 413 YEQMLWDFLYLLTGGTNNKE--------K--------A--------------IMRDEIRVIIEFPDPMSVNLNELSSTLN 462 (518) Q Consensus 413 l~~li~~il~l~~~~~~~~~--------~--------~--------------~~~~~~~v~v~f~D~i~~d~~~~~~~~~ 462 (518) .+.+-+.+|.+...++.... + . .....++|.|+=..+.+.-.++.+..++ T Consensus 457 ~~~~g~~lL~lI~~~~~~er~~RI~~edg~~~~v~in~~~~d~~~G~~v~~Ndi~g~~Dv~v~~~p~~~s~r~~~~~~l~ 536 (725) T protein:vir:10 457 MRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRSEIL 536 (725) T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeEeccccccccccchhhhhccccceeEEEeeccCcHHHHHHHHHHHH Confidence 88888888887665542110 0 0 0012356666655554444566666666 Q ss_pred HHHhCC--CCCHH-HHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 463 NMNSAL--AMSVE-EKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 463 ~~~~aG--~~S~~-~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+..+- .++.- ..|..+.+..+-+-+++.+++|+.........+|..- .+.- T Consensus 537 qll~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~~~~~----e~~q 591 (725) T protein:vir:10 537 ELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETP----EEQQ 591 (725) T ss_pred HHHHhccccchhHHHHHHHHhhcCCchhHHHHHHHHHhhhhhhccCCcccc----chhH Confidence 665321 12221 1122222223444455566666654333222222210 0111 No 108 >protein:vir:9263 Length: 725 # NCBI annotation: 1 # Family: family:all:487 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720327;genbank:gi:24371585;genbank:GeneID:955785 Probab=98.86 E-value=2.5e-08 Score=62.24 Aligned_cols=481 Identities=7% Similarity=-0.062 Sum_probs=229.9 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHH-------hhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYL-------PLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIV 73 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~-------~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~ 73 (518) |-=.-.+-+.++.||.- +.+.-+.|+ ..|.+++|.-....+.+ .+. +..+|+-+.++ T Consensus 1 m~d~~~~~~~~~~~~~~-----~~~~~~~~r~~a~~d~~fy~G~Qw~~~~~~~l~---~q~--------rp~~N~i~~~i 64 (725) T protein:vir:92 1 MADNENRLESILSRFDA-----DWTASDEARREAKNDLFFSRISQWDDWLSQYTT---LQY--------RGQFDVVRPVV 64 (725) T ss_pred CCchHHHHHHHHHHHHH-----HHHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHH---hcC--------CCcccchHHHH Confidence 33332333444556531 122223332 33444433222211111 111 12357777777 Q ss_pred HHHHHHHcCCcceEEeccccccchHHHHH----HHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-------CCeEE Q lcl|Aclame:pro 74 VVAAEYISGKPLSIDVTGVNGSKDENLTK----QLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-------NGRPS 142 (518) Q Consensus 74 ~~~A~ll~~e~~~i~v~~~~~~~d~~~~~----~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-------~~~i~ 142 (518) +.+...--+-.+.+.|.+.+. .|+.+.+ .+..+...++......++.+.++..|-+++++..| ++.++ T Consensus 65 ~~v~g~e~~nr~d~~v~P~~~-~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~ 143 (725) T protein:vir:92 65 RKLVSEMRQNPIDVLYRPKDG-ASPDAADVLMGMYRTDMRHNTAKIAVNVAVREQIESGVGAWRLVTDYEDQSPTSNNQV 143 (725) T ss_pred HHHHhhHHhCCcceEEecCCc-cHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhcCcceeeeeecccCCCCCCCcee Confidence 777777666778899988665 4444444 45556667888888889999999999999998653 13344 Q ss_pred EEEEc----CCeeEEEEEc--CcEEEE--EEEEE-------------EEe-----------cC-------ceEEEEEEEE Q lcl|Aclame:pro 143 ISVHS----SSQFWIDFKN--NEPFRF--NFFEE-------------IPT-----------SN-------KADIYYLVES 183 (518) Q Consensus 143 i~~v~----ad~~~P~~~~--g~~~~~--~f~~~-------------~~~-----------~~-------~~~~y~~lE~ 183 (518) |..++ ..++|.-+.. -++.++ +|... +.. ++ ... .++.|| T Consensus 144 i~~~~i~~~~~~V~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-vrv~e~ 222 (725) T protein:vir:92 144 IRREPIHSACSHVIWDSNSKLMDKSDSRHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDT-IQIAEF 222 (725) T ss_pred eEEeeccCChhhcccCchhhccChhhHHHHHHHhcCCHHHHHHHHhhcCcchhhhhhcccCCcccccccCCCe-EEEEEE Confidence 44331 2233332211 111111 11111 000 00 000 112222 Q ss_pred eecccceeeeeeccceEEEEEEEeccC---Cccccccccccccccc-c----------------ccccccCcccceeec- Q lcl|Aclame:pro 184 REIKQWDKEGKKLSGGFVTYSVIKIDG---DKTTPISAERLPEQIT-S----------------YLHTNDIQLNHSVSI- 242 (518) Q Consensus 184 he~~~~~~~~~~~~~~~I~n~ly~~~~---~~~v~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~~t- 242 (518) .+. ..+.-.+|...+ +..+.+....+..... . ...|.-+....++.. T Consensus 223 ~~r------------~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~ 290 (725) T protein:vir:92 223 YEV------------VEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDK 290 (725) T ss_pred EEE------------EEEeeeEEeecCCCCCceeecChhhHHHHHHHHhccCchhhhhccceeeeEeeeeecchhhhcCC Confidence 211 111111222111 1111100000000000 0 000000000011111 Q ss_pred -CCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HhccceeeechhhhccCCCCCccccccC Q lcl|Aclame:pro 243 -GLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREG-EKTKTKIAASERMFRKKVNKSTDKEEWS 320 (518) Q Consensus 243 -g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~-~~g~~ri~v~~~~l~~~~~~~~~~~~~~ 320 (518) ..+.-.|.|+|.-+.-....++|++-+.+.++++..+.+|...|...|-+ ..++.+.+++...++.... .+. T Consensus 291 ~~~~~~~~P~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~ 364 (725) T protein:vir:92 291 QLIAGEHIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEH------MYD 364 (725) T ss_pred CCCCCCceeeEEEEeeeeccCCcccccceeccchhHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHH------HHh Confidence 11111234444322222234678888999999999999999999999988 4566777777776642110 000 Q ss_pred CCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHH Q lcl|Aclame:pro 321 MNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATV 399 (518) Q Consensus 321 ~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~ 399 (518) .++...+...+... ..|.-....++.+.+.=--.+++..++.....|...+|++...+|..++..++-.|.++..... T Consensus 365 -~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~ 443 (725) T protein:vir:92 365 -GNDDYPYYLLNRTDENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRAD 443 (725) T ss_pred -ccCccceeeccccccccccccccCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhccCchhhHHHHHHHHHHHHH Confidence 01111121111111 1111122345555543334678889999998999999999999998877777888888887777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------CC----------------------CcCCceeeEEEeCCC Q lcl|Aclame:pro 400 RKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKE--------KA----------------------IMRDEIRVIIEFPDP 449 (518) Q Consensus 400 ~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~--------~~----------------------~~~~~~~v~v~f~D~ 449 (518) .........+..+.+.+-+.+|.+...++.... +. .....++|.|+=..+ T Consensus 444 ~~l~~~~Dnl~~~~~~~g~~lL~lI~~~~~~~r~~RI~~edg~~~~v~in~~~~~~~~G~~~~~Ndi~g~~Dv~v~~~p~ 523 (725) T protein:vir:92 444 LETYVFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPS 523 (725) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCcceEEeccccccccccchhhhhccccceeeEEeeccC Confidence 677777777788888888888777665542110 00 001135566655554 Q ss_pred CCCCHHHHHHHHHHHHhCC--CCCHH-HHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccC---c-------CCC Q lcl|Aclame:pro 450 MSVNLNELSSTLNNMNSAL--AMSVE-EKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGG---M-------ETK 516 (518) Q Consensus 450 i~~d~~~~~~~~~~~~~aG--~~S~~-~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~---~-------~~~ 516 (518) ...-.++.+..++.+..+- .++.- ..+....+..+-+-+++.+++|+........++|..--. . ... T Consensus 524 ~~s~r~~~~~~l~ql~~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~~~~~e~~q~~~~~qqa~~~q 603 (725) T protein:vir:92 524 FQSMKQQNRAEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQ 603 (725) T ss_pred hHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhcccchHHHHHHHHHHhhhchhccCCccchhhhHHHHHHHHHHHhh Confidence 4444556666666665321 11211 112111122333445555666665433332223221000 0 000 Q ss_pred CC Q lcl|Aclame:pro 517 GG 518 (518) Q Consensus 517 gG 518 (518) .. T Consensus 604 ~~ 605 (725) T protein:vir:92 604 QD 605 (725) T ss_pred hH Confidence 00 No 109 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=98.83 E-value=3.2e-08 Score=61.69 Aligned_cols=440 Identities=8% Similarity=-0.026 Sum_probs=186.6 Q ss_pred CCcC----chHHHHHHHHhcCCCChhhH--HhhHHHHhhccchhhh-hhhhhhhhhhhccCC-CCcc--ccceecCchHH Q lcl|Aclame:pro 1 MGVW----SVMTRFIKGWLNGKPNGSEP--ELIPKYLPLVPDNQKE-WSKDSYLTSLWAQGY-VPTV--HDKLMNSGTGN 70 (518) Q Consensus 1 ~~~~----~~~~~~~~~w~~g~p~~~e~--~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~-~~~~--~~~~~~~~l~~ 70 (518) .|-. +-....++++-...+|+..- ..+.... +..++ +.+.. . -|..+. -++. -.-+.+..+++ T Consensus 78 ~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~----~~s~y~~~~~~-~--~~~~~~~f~gyql~alY~~~~lar 150 (862) T protein:vir:99 78 SGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEG----KQSSYAVPEAL-Q--DWYLSQGFIGHQACALIAQHWLVD 150 (862) T ss_pred hhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccc----cccccccchhc-c--ccccccCcccHHHHHHHHhCchhh Confidence 0000 00001111111111111000 0000000 00000 00000 0 000000 0000 01122457899 Q ss_pred HHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCe Q lcl|Aclame:pro 71 EIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQ 150 (518) Q Consensus 71 ~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~ 150 (518) .||+..|+-++.+...|+..+.+...++...+.|++.++.-++...+.+++..+-..|+.++-..++...+. .-+. T Consensus 151 kiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~eair~~RLyGga~ililv~~~D~~----~Lsq 226 (862) T protein:vir:99 151 KACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLIEFNRFKNVFGIRVAIFVVDSEDPD----YYEK 226 (862) T ss_pred hhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEEecCcCch----hhhc Confidence 999999999999998888654433333444566777777777888888888877778887655443211000 0011 Q ss_pred eEEEE--EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccc Q lcl|Aclame:pro 151 FWIDF--KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSY 228 (518) Q Consensus 151 ~~P~~--~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~ 228 (518) .+-.. ..|.+.++..++..-... +..-+++... ....++ .- +.|.-.+ T Consensus 227 PLn~e~I~kG~lkgl~vlDp~w~~p----~~v~~~~~Dp----~sp~yG--kP--~~y~I~g------------------ 276 (862) T protein:vir:99 227 PFNPDGITPGSYRGISQIDPYWMMP----MLTAESTADP----SSQFFY--EP--EFWIISG------------------ 276 (862) T ss_pred CcCcccccccceeEEEEechhhhcc----cccccccccc----cccccC--Cc--eeeeecC------------------ Confidence 11110 112222332222110000 0000000000 000000 00 0011000 Q ss_pred cccccCcccce-eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhc Q lcl|Aclame:pro 229 LHTNDIQLNHS-VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFR 307 (518) Q Consensus 229 ~~~~~~~~~~~-~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~ 307 (518) ..+....+ +..|.+.+- +.++ .++ .+|+|++..+.+.|+..+.+......-+...+.+++--+ .+. T Consensus 277 ---~~IH~SRliif~g~~vpd--~lk~--ay~-----f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~v~ktd-~l~ 343 (862) T protein:vir:99 277 ---QKYHRSHLIIARGPQPAD--ILKP--TYI-----FGGIPLVQRIYERVYAAERTANEAPLLAMNKRTTAIHTD-TAK 343 (862) T ss_pred ---eeeccceeEEecCCCchh--hhhc--cCC-----ccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeech-hHh Confidence 01111111 112221111 1111 222 369999999999999999887666555554444443222 221 Q ss_pred cCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccc-cccCCcc- Q lcl|Aclame:pro 308 KKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPAT-FNLGNRE- 385 (518) Q Consensus 308 ~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~t-f~~d~~~- 385 (518) ...+...-..+. ...+.++...+.+- .+..+.+++++.++- -....++.+++.|...++++.-. ||....+ T Consensus 344 ~l~~ed~l~~r~---~~~~~~rdN~Gi~l--iD~eEe~e~ls~slS--GL~dll~~~~q~IAaas~IP~tiLfGqspaGl 416 (862) T protein:vir:99 344 AIANEDKFIQRL---MFWVRYRDNHAVKV--LGTDETMEQFDTSLA--DFDAVIMGQYQLVASIAKTPATKLLGTAPKGF 416 (862) T ss_pred hhccHHHHHHHH---HHHHhccCcceeEE--ecCCCceeEEecccC--ChHHHHHHHHHHHHhhhCCCceeecccCcccc Confidence 111100000000 00011111111111 122244666665543 34567777888899999998764 4544222 Q ss_pred -chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH--- Q lcl|Aclame:pro 386 -VKATEIWSLQDATVRKIEKKK-RLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST--- 460 (518) Q Consensus 386 -~TAtEi~s~~~~t~~t~~~~~-~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~--- 460 (518) -|+.+= .+-.|..+..+| ..++..|+.++..+ .+. . + . +.+++|.|++-...|+.++++. T Consensus 417 nATGE~D---~~nYyD~I~s~QE~~L~P~LerL~~li-~~~-------l-g-~--~~d~~ieFnpL~~~sekEkAEi~kk 481 (862) T protein:vir:99 417 NSTGEFE---TISYHEELESIQEHVYMPFLQRHYLIS-RLS-------L-G-I--QHEIDVVMEPVASMTAQQQADLNKT 481 (862) T ss_pred cCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-------c-C-C--CCcceEEeCCCCCCCHHHHHHHHHH Confidence 344332 233556666666 34666666665433 211 1 1 1 2369999999999998877755 Q ss_pred ----HHHHHhCCCCCHHHHHHHH-------cCCCCHHHHHHHH-------HHHHHhccccCCCCch-------------- Q lcl|Aclame:pro 461 ----LNNMNSALAMSVEEKVKLI-------HPKWEDEEIQAEV-------KRIYLENAIGEVPDPE-------------- 508 (518) Q Consensus 461 ----~~~~~~aG~~S~~~~v~~~-------~~~~~eeea~eev-------~rI~~E~~~~~~~dp~-------------- 508 (518) +++++++|+++..++..++ +...+++++++.- +.+.+ .+.+....|. T Consensus 482 ~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~~e~-~g~a~~~ap~de~~aga~~~~~e~ 560 (862) T protein:vir:99 482 KAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLAAYQK-AGAAQETASAKETQAGAAVTTAEG 560 (862) T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCccccccccc-CCcccccccccccccccCCccccC Confidence 6788889999999887764 3445555443111 11100 0000001110 Q ss_pred -----hccCcCCCCC Q lcl|Aclame:pro 509 -----AIGGMETKGG 518 (518) Q Consensus 509 -----~~~~~~~~gG 518 (518) +..+ ++++| T Consensus 561 d~~~~p~~~-~~~~g 574 (862) T protein:vir:99 561 DQPNVQMVP-SMKPG 574 (862) T ss_pred CcccccccC-CCCCC Confidence 0000 22233 No 110 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=98.83 E-value=9.1e-09 Score=64.66 Aligned_cols=398 Identities=14% Similarity=0.101 Sum_probs=176.4 Q ss_pred HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhcc----CCCCcc-------ccceecCchHHHHHHH Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQ----GYVPTV-------HDKLMNSGTGNEIVVV 75 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~----~~~~~~-------~~~~~~~~l~~~i~~~ 75 (518) |+.+ +...|...+-+. .++... ..-+.+..+++.||+. T Consensus 1 ~~~~-------------------------------~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~ 49 (427) T protein:vir:10 1 MKIV-------------------------------KHDGYNDIFNGGADGSPKPFFMSDASYHVGSFYNDNATAKRIVDV 49 (427) T ss_pred CCcc-------------------------------ccchHHHHhhcCCCCcccCccccCchHHHHHHHHcCchhhhhhcc Confidence 1111 111111111000 011111 1123356789999999 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDF 155 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~ 155 (518) .|+-++.+-.+|+ +.+ +++ .++..++.-++...+.+++..+-..|++++-+.+++++..- -|.- T Consensus 50 ~aed~~r~g~~i~--g~~--~~~----~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~--------~p~~ 113 (427) T protein:vir:10 50 IPEEMVTAGFKMS--GVK--DEK----EFKSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLT--------SQAK 113 (427) T ss_pred chHHhhcCCcccc--Ccc--HHH----HHHHHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccc--------cccC Confidence 9999998765543 321 122 34444555578889999999999999999887776654211 1111 Q ss_pred EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 156 KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 156 ~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) ..|.+..+..+..... ..+ ++.. +-....+ |..+ .|+-.+...... ..+. T Consensus 114 ~~g~l~~l~v~d~~~~----~~~---~~~~----dp~s~~f--g~P~--~y~v~~~~~~~~---------------~~iH 163 (427) T protein:vir:10 114 PGAKLEGVRVYDRFAI----TVE---KRVT----NARSPRY--GEPE--IYKVSPGDNMQP---------------YLIH 163 (427) T ss_pred CCcceeEEEEechhcc----ccc---cccc----Ccccccc--Ccce--EEEEecCCCCcc---------------eEEc Confidence 2233333322221100 000 0000 0000001 1111 122111110000 0011 Q ss_pred ccce-eecCCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCC Q lcl|Aclame:pro 236 LNHS-VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKS 313 (518) Q Consensus 236 ~~~~-~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~ 313 (518) +..+ +..|.+.|. +.+ .. .+.+|.|++.. +.+.+..++.+-.....=+...+.+++--+.+-.-..++. T Consensus 164 ~SRli~~~g~~~p~--~~~--~~-----~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~v~k~~~l~~~~~~~~ 234 (427) T protein:vir:10 164 HSRVFIADGERVAQ--QAR--KQ-----NQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQAVWKVKGLAEMCDDDD 234 (427) T ss_pred cccEEEecCCCchh--hhc--cc-----CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhcCcc Confidence 1111 122222111 111 11 34569999865 5688888888776665555444444432222211111111 Q ss_pred ccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccchHHHHH Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREVKATEIW 392 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~TAtEi~ 392 (518) ........-......+..++.... .+..+.++.++.++- -.-..++.+.+.+...+|++.-.| |-+.++..||. . T Consensus 235 ~~~~~~~r~~~~~~~~~~~~~~~l-~~~~e~~e~~~~~ls--gl~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnstg-d 310 (427) T protein:vir:10 235 AQYAARLRLAQVDDNSGVGRAIGI-DAETEEYDVLNSDIS--GVPEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQ-N 310 (427) T ss_pred chHHHHHHHHHHHHhcCcccceee-ecCCCceeEEecccC--ChHHHHHHHHHHHHhhhCCCeeeeccCCccccccch-h Confidence 110000000000011111111111 112244666665443 356667788888999999987655 44433333331 1 Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH-------HHHHH Q lcl|Aclame:pro 393 SLQDATVRKIEKKK-RLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS-------TLNNM 464 (518) Q Consensus 393 s~~~~t~~t~~~~~-~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~-------~~~~~ 464 (518) ...+-.|.+++.+| ..++..|+.++..++. ..+++|.|++....++.++++ +++++ T Consensus 311 ~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i~~----------------s~~~~~~f~pL~~~s~kEkaei~~~~a~a~~~~ 374 (427) T protein:vir:10 311 TALETFYKLVDRKREEDYRPLLEFLLPFIVD----------------EEEWSIEFEPLSVPSKKEESEITKNNVESVTKA 374 (427) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------CCCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHH Confidence 12334566666666 4466666666654421 126889999999999876654 56667 Q ss_pred HhCCCCCHHHHHHHHc-----CCCCH--HHHHHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 465 NSALAMSVEEKVKLIH-----PKWED--EEIQAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 465 ~~aG~~S~~~~v~~~~-----~~~~e--eea~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) +++|+++.+++.+.+. .+..+ +...+|. |++. .++|....+.+.+. T Consensus 375 ~~~gvi~~~e~r~~L~~~~~~~~~~~~~~~~~e~~-----~~~~--e~~p~~~e~~~d~~ 427 (427) T protein:vir:10 375 ITEQIIDLEEARDTLRSIAPEFKLKDGNNINIREP-----EETT--EPEPGLGEKLEDEN 427 (427) T ss_pred HhcCCCCHHHHHHHHHhhhccccCCCCcccccccc-----chhc--CCCCCCCCCCCCCC Confidence 7788888877665541 11100 0001111 1111 11222222222222 No 111 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=98.77 E-value=2.4e-08 Score=62.32 Aligned_cols=403 Identities=10% Similarity=0.056 Sum_probs=176.3 Q ss_pred chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC-ccccceecCchHHHHHHHHHHHHcCC Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP-TVHDKLMNSGTGNEIVVVAAEYISGK 83 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~l~~~i~~~~A~ll~~e 83 (518) |+-.+ -|.....+..- ...+ ..+...... -...-+.+..+++.||+..|+-++.+ T Consensus 1 ~~~~D-------------------~~~n~~~gg~~---~~~~--~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~ 56 (422) T protein:vir:10 1 MVKTD-------------------SYANIFLGGSD---GSEI--YGSLQNQAPTILASLYADNALVRRIIDTIPETALAA 56 (422) T ss_pred Cccch-------------------hhHHHHcCCCC---Cccc--cCcccccCHHHHHHHHHhChhhHHHHhhhhHHHhcC Confidence 11111 11111111000 0000 000000000 00112335678999999999999988 Q ss_pred cceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcCcEEEE Q lcl|Aclame:pro 84 PLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNEPFRF 163 (518) Q Consensus 84 ~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~~~~~ 163 (518) -.+| .+.+ +.++.+..++ .-+++..+.+++..+-..|++++-+.+.+++-. + -|+-..|.+..+ T Consensus 57 g~~i--~~~~--~~~~~~~~~~----~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~------~--~Pl~~~g~~~~l 120 (422) T protein:vir:10 57 GFHI--DGID--DEPAFWSRWD----DLEMTQNINDAWSWARLFGGAAIVAIVKDNRAL------T--SPVREGAELETV 120 (422) T ss_pred Cccc--cCCC--HHHHHHHHHH----HhhHHHHHHHHHHhhccccceEEEEEecCCCCc------c--ccccccCceeeE Confidence 6554 3321 1223334444 447888999999999888998888776443211 1 122223433332 Q ss_pred EEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce-eec Q lcl|Aclame:pro 164 NFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS-VSI 242 (518) Q Consensus 164 ~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~t 242 (518) ..++... + +-.++.. +-.... -|.. +.|+-.+..... . ..+.+..+ +.. T Consensus 121 ~v~d~~~------i-~~~~~~~----dp~s~~--fg~P--~~y~v~~~~~~~----~-----------~~iH~SRli~~~ 170 (422) T protein:vir:10 121 RVYDRTQ------V-KVQTREE----NPRNAR--FGEP--LTYRITTNESDM----F-----------YDVHYSRIHIID 170 (422) T ss_pred Eeecccc------c-cchhccc----Cccccc--cCcc--eEEEEecCCCCc----c-----------eeeccceeEEeC Confidence 2211110 0 0000100 000000 0111 111111110000 0 00111111 122 Q ss_pred CCCcceEEEecCcccCccccCCCCCcchhhh-hHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCC Q lcl|Aclame:pro 243 GLKSMGAYLINNSPSNTRYPHLNLGESDLSQ-CTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSM 321 (518) Q Consensus 243 g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~-~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~ 321 (518) |.+.|. +.++ . ...+|.|++.. +.+.+..++.+-.....=+...+.+++--+.+-.-..++......... T Consensus 171 g~~~p~--~~~~--~-----~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~r 241 (422) T protein:vir:10 171 GERIPN--VMRR--Q-----NDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQAVWKAKGLAELCDDSEGFGAARLR 241 (422) T ss_pred CCCchh--hhcc--c-----CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhcCCccchHHHHHH Confidence 222111 1111 1 23469999976 679899888877766665544444444222221111111110000000 Q ss_pred CcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccchHH--HHHHHHHHH Q lcl|Aclame:pro 322 NVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREVKAT--EIWSLQDAT 398 (518) Q Consensus 322 d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~TAt--Ei~s~~~~t 398 (518) -......+.....+. -.+..+.++.++.++- .....++.+++.+...+|++.-.| |.+.++..|| +- .+-. T Consensus 242 ~~~~~~~~~~~~~~~-l~~~~e~~e~~~~~ls--gl~~~~~~~~~~iaaa~~IP~t~L~G~s~~Glnatgd~d---~~~y 315 (422) T protein:vir:10 242 LAQVDNNSGVGQAIG-IDAESEEYSVLNSDIG--GIDAFLDKKFDRIVALSGIHEIILKNKNVGGVSSSQNTA---LETF 315 (422) T ss_pred HHHHHHhcCCcccee-EecCCcceEEEecccC--ChHHHHHHHHHHHHhhhCCCeeeeccCCcccccccchHH---HHHH Confidence 000000111111111 0112344666665543 356677888888999999987655 4444444333 33 3345 Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH-------HHHHHHhCCCC Q lcl|Aclame:pro 399 VRKIEKKKR-LIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS-------TLNNMNSALAM 470 (518) Q Consensus 399 ~~t~~~~~~-~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~-------~~~~~~~aG~~ 470 (518) |.+++.+|. .++..|..++..++. ..+++|.|++-...|+.++++ ++++++++|++ T Consensus 316 yd~i~~~Qe~~l~p~l~~l~~~i~~----------------s~~~~~~f~pL~~~sekekaei~~~~a~a~~~~~~~g~i 379 (422) T protein:vir:10 316 HKLVDRKRNAELLPILEFLIPFIVN----------------AEEWSVEFNPLAQESSKDKAEILEKNVNSIAALIAAGAM 379 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----------------cCCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC Confidence 667777774 467777777665432 126889999998888875554 46667788888 Q ss_pred CHHHHHHHHcCCCCH-----HHHHHHHHHHHHhccccCCCCchhc Q lcl|Aclame:pro 471 SVEEKVKLIHPKWED-----EEIQAEVKRIYLENAIGEVPDPEAI 510 (518) Q Consensus 471 S~~~~v~~~~~~~~e-----eea~eev~rI~~E~~~~~~~dp~~~ 510 (518) +.+++.+.|.....+ .-.+++.+. .+++. ....+|... T Consensus 380 ~~~e~r~~L~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~d 422 (422) T protein:vir:10 380 DIDEARDTLRTIAPEVKINDGSVETEVTI-SETSN-DPLEVPTDD 422 (422) T ss_pred CHHHHHHHhhhhcccccCCCCCCccccch-hhcCC-CCCCCCCCC Confidence 887776555211111 000111111 11111 111122111 No 112 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=98.76 E-value=6.2e-08 Score=60.10 Aligned_cols=423 Identities=9% Similarity=-0.005 Sum_probs=183.5 Q ss_pred CCc---CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGV---WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~---~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) |=- .+.+..+.=.+....|.+.. .....|. ....+..+. +. .-+.+..|++.||+..| T Consensus 71 ~ds~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~f~gyq---l~-------------alY~~~~l~rkiVd~pA 131 (765) T protein:vir:96 71 MDSAYGDGPTPAAKAAAGGQNPYVVP-TMLQDWY--NSQGFIGYQ---AC-------------AIISQHWLVDKACSMSG 131 (765) T ss_pred ccccccccccchHHHhhhccCccchh-hHHHhhh--cccCCccHH---HH-------------HHHHhCchhhhhhhcch Confidence 100 11111121111111111100 0000000 000111100 00 01123468999999999 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE--CCeEEEEEEcCCeeEEEE Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL--NGRPSISVHSSSQFWIDF 155 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d--~~~i~i~~v~ad~~~P~~ 155 (518) +-++.+...|+..+ +..++ ...+.|++.++.-+++..+.+++..+-..||.++-+.++ +++-. + -|+- T Consensus 132 eDa~R~g~~I~~~~-~e~~~-~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l------~--~PL~ 201 (765) T protein:vir:96 132 EDAARNGWELKSDG-RKLSD-EQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYY------E--KPFN 201 (765) T ss_pred HHhhcCCceeecCc-cccCH-HHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcchh------h--cccc Confidence 99999987776433 22222 234557766666678999999999999999988765443 21100 0 1210 Q ss_pred ----EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 156 ----KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 156 ----~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) ..|.+..+..++.+-.. .++..|+.... ....+ |.. +.|.-.+ T Consensus 202 ~~~I~kg~~kgl~vldp~~~~----~~~v~e~~~Dp----~sp~f--g~P--~~y~i~g--------------------- 248 (765) T protein:vir:96 202 PDGIAPGSYKGISQIDPYWAM----PQLTAESTADP----SAEHF--YEP--DFWIISG--------------------- 248 (765) T ss_pred ccccccceeeEEEEechhhcc----cccchhccccc----ccccc--Ccc--eeeeecC--------------------- Confidence 01112222211110000 00000110000 00000 000 0011000 Q ss_pred ccCcccce-eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCC Q lcl|Aclame:pro 232 NDIQLNHS-VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKV 310 (518) Q Consensus 232 ~~~~~~~~-~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~ 310 (518) ..+....+ +..|.+.+. +.+ ..++. +|+|++..+.+.|+.++.+-.....=+.....+++-- +++.... T Consensus 249 ~~IH~SRli~~~g~~lpd--~lk--~~~~~-----~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v~k~-~~~~~l~ 318 (765) T protein:vir:96 249 KKYHRSHLVVVRGPQPPD--ILK--PTYIF-----GGIPLTQRIYERVYAAERTANEAPLLAMSKRTSTIHV-DVEKAIA 318 (765) T ss_pred ceeccceEEEecCCCchh--hhc--cccCc-----cCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeee-chHhhhc Confidence 01111111 112222111 111 12332 4999999999999999988766666555444444422 2222111 Q ss_pred CCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccc--h Q lcl|Aclame:pro 311 NKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREV--K 387 (518) Q Consensus 311 ~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~--T 387 (518) +.. .....+ .....++...+.+- .+..+.++.++.++- -....++.+++.|...++++.--| |-+..+. | T Consensus 319 ~~~--~l~~r~-~~~~~~r~n~g~~~--id~ee~~e~~s~~ls--gl~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnAT 391 (765) T protein:vir:96 319 NED--AFNARL-AFWIANRDNHGVKV--IGIDETMEQFDTNLS--DFDSVIMNQYQLVAAIAKTPATKLLGTSPKGFNAT 391 (765) T ss_pred cHH--HHHHHH-HHHHHhcCCceeEE--ecCCcceeEEecccC--CHHHHHHHHHHHHHhhhCCCeeeeccCCcccccCc Confidence 110 000000 00001111111111 112344666665543 456677788888999999976444 4332222 3 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH------ Q lcl|Aclame:pro 388 ATEIWSLQDATVRKIEKKK-RLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST------ 460 (518) Q Consensus 388 AtEi~s~~~~t~~t~~~~~-~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~------ 460 (518) +.+ +.+-.|.++..+| ..++..|+.|+..++.. ... +.+++|.|++....|+.++++. T Consensus 392 Ge~---D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s---------~~i---~~d~~i~FnpL~~~sekEkAei~~k~Ae 456 (765) T protein:vir:96 392 GEH---ETISYHEELESIQEHIFDPLLERHYLLLAKS---------ESI---DVQLEIVWNPVDSTTSQQQAELNNKKAA 456 (765) T ss_pred chH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------cCC---CCcceEEeCCCCCCCHHHHHHHHHHHHH Confidence 322 2344566777777 44677777777665432 111 1269999999999998776654 Q ss_pred -HHHHHhCCCCCHHHHHHHHc-------CCCCHHHHHHHHHHHHHhccccCCCCchhc----cCcCC--------CCC Q lcl|Aclame:pro 461 -LNNMNSALAMSVEEKVKLIH-------PKWEDEEIQAEVKRIYLENAIGEVPDPEAI----GGMET--------KGG 518 (518) Q Consensus 461 -~~~~~~aG~~S~~~~v~~~~-------~~~~eeea~eev~rI~~E~~~~~~~dp~~~----~~~~~--------~gG 518 (518) +++++++|+++..++..++. ...++++++.+- -+..|............ +.-+. .|+ T Consensus 457 a~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~-~~~pe~~~~~~~~~~~~~~~~~e~~~~~a~p~~~eg~ 533 (765) T protein:vir:96 457 TDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEP-GMSPENLAELEKAGAQSAKAKGEAERAEAQAGAVEGA 533 (765) T ss_pred HHHHHHhcCCCCHHHHHHHHhccccCCCCCCCcccccccc-CCCccccccccCCCcccccccCccccccCCCCccCCC Confidence 77788889999888777652 123443332110 01111000000000000 00000 000 No 113 >protein:vir:105429 Length: 708 # NCBI annotation: gene 3 protein # Family: family:all:487 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958179;genbank:gi:41057281;genbank:GeneID:2716676 Probab=98.73 E-value=7.9e-08 Score=59.51 Aligned_cols=490 Identities=8% Similarity=0.010 Sum_probs=227.7 Q ss_pred CC-cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCC-----Cc--cccceecCchHHHH Q lcl|Aclame:pro 1 MG-VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYV-----PT--VHDKLMNSGTGNEI 72 (518) Q Consensus 1 ~~-~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-----~~--~~~~~~~~~l~~~i 72 (518) |- ....+-+.++.||.-. .+.-..|++....+.+++. +.-..|..... .+ ..+-.++.|+-+.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~D~~f~~---~~G~QW~~~~~~~l~~~~q~~grP~~~~N~i~~~ 72 (708) T protein:vir:10 1 MAETLEKKHERIMLRFDRA-----YSPQKEVREKCIEATRFAR---VPGGQWEGATAAGTKLDEQFEKYPKFEINKVATE 72 (708) T ss_pred CchhHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHhhhhcCCCceEEcchHHH Confidence 21 1112223335555321 1111222221111111110 00113321100 00 12345778999999 Q ss_pred HHHHHHHHcCCcceEEeccccccchHHH----HHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE----------C Q lcl|Aclame:pro 73 VVVAAEYISGKPLSIDVTGVNGSKDENL----TKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL----------N 138 (518) Q Consensus 73 ~~~~A~ll~~e~~~i~v~~~~~~~d~~~----~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d----------~ 138 (518) ++.....--+-.+.+.|...+...|..+ +..+..+.+.++......++.+.++..|-+++++..| + T Consensus 73 v~~v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~d~i~~G~Gw~~~~~d~~~e~d~~~~~ 152 (708) T protein:vir:10 73 LNRIIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDDR 152 (708) T ss_pred HHHHHHHHHhCCcceEEEcCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhhcccceeeeeeccccccCCCCCc Confidence 9999998888889999987654444444 4445666678888888999999999999999988543 1 Q ss_pred CeEEEEEEc--CCeeEEEEE--cCcEEEE--EEEEEEEe--------c--------------------CceEEEEEEEEe Q lcl|Aclame:pro 139 GRPSISVHS--SSQFWIDFK--NNEPFRF--NFFEEIPT--------S--------------------NKADIYYLVESR 184 (518) Q Consensus 139 ~~i~i~~v~--ad~~~P~~~--~g~~~~~--~f~~~~~~--------~--------------------~~~~~y~~lE~h 184 (518) .++.|..+. ...++.-+. .-++.++ +|....-. + +.+.+ ++.||. T Consensus 153 ~~i~i~~~~~p~~~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~p~~a~~~~d~~~~~~~~~~~~~~d~v-~v~ey~ 231 (708) T protein:vir:10 153 QRIAIEPIYDPSRSVWFDPDAKKYDKSDALWAFCMYSLSPEKYEAEYGKKPPTSLDVTSMTSWEYNWFGADVI-YIAKYY 231 (708) T ss_pred cccceEEeecchhhcccCccccccChhhhhhhhhccCCCHHHHHHhCCCCcccccccccCCCccccccCCCce-EEEEee Confidence 234444443 244543221 1122222 22111000 0 00111 122222 Q ss_pred ecccceeeeeeccceEEEEEEEec-cCCccccccccccccc----------------ccc-ccccccCcccceee--cCC Q lcl|Aclame:pro 185 EIKQWDKEGKKLSGGFVTYSVIKI-DGDKTTPISAERLPEQ----------------ITS-YLHTNDIQLNHSVS--IGL 244 (518) Q Consensus 185 e~~~~~~~~~~~~~~~I~n~ly~~-~~~~~v~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~--tg~ 244 (518) +..... .+...|.. .++..+.......... ... ...+..+....++. ... T Consensus 232 ~r~~~~----------~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~le~~~~~ 301 (708) T protein:vir:10 232 EVRKES----------VDVISYRHPITGEIATYDSDQVEDIEDELAIAGFHEVARRSVKRRRVYVSVVDGDGFLEKPRRI 301 (708) T ss_pred eEEEEE----------EEEEEEecCCCCceeeecchhhhhHHHHHHhcccchhheeeeeeEEEEEEeecchhhhccCCCC Confidence 111000 00001110 0111110000000000 000 00000000111111 112 Q ss_pred CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee-eechhhhccCCCCCccccccCCCc Q lcl|Aclame:pro 245 KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKI-AASERMFRKKVNKSTDKEEWSMNV 323 (518) Q Consensus 245 ~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri-~v~~~~l~~~~~~~~~~~~~~~d~ 323 (518) +.-.|.|+|..+.-....+.|.+-+.+.++++.++.+|...|++.|-+-.....+ +++...+.... ...-.++. T Consensus 302 p~~~fP~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~~i~~~~-----~~~~~~~~ 376 (708) T protein:vir:10 302 PGEHIPLIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLE-----KHWEARNK 376 (708) T ss_pred CCCceeeEEEeeeeeccCCCcccceeecccchhHHHHHHHHHHHHHHHHhcCCcccccChhhhhhHH-----HHHhhccc Confidence 2223444443322222245666678899999999999999999999886654433 33333332110 00001122 Q ss_pred chhheeeecCCcCC--C-CCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHH Q lcl|Aclame:pro 324 DEDYFMQFKGTLDA--G-AKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVR 400 (518) Q Consensus 324 d~~~~~~~~~~~~~--~-~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~ 400 (518) +...|...+...+. . ......+..++|.--...+++.++.....|...+|++...+|-.+ +.++..|.++...... T Consensus 377 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~q~~~~~~~~~~l~q~~~~~i~~vsG~~~~~lG~~s-n~SG~aI~~rq~qg~~ 455 (708) T protein:vir:10 377 KRPAFLPLREVRDKSGNIIAGATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQMPS-NIAQETVNNLMNRADM 455 (708) T ss_pred cchhhhccccccccccccccccCCccccCCccchHHHHHHHHHHHHHHHHHhCcChhHccCcc-chHHHHHHHHHHHHHH Confidence 22222211111110 0 011122334444333456888888888899999999999998643 3678888888877777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------------------------------CCCcCCceeeEEEeCCC Q lcl|Aclame:pro 401 KIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKE-------------------------------KAIMRDEIRVIIEFPDP 449 (518) Q Consensus 401 t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~-------------------------------~~~~~~~~~v~v~f~D~ 449 (518) ........+..+.+.+-+.+|.+...++.... +......++|.|+=..+ T Consensus 456 ~l~~~~Dnl~~~~~~~g~~lL~li~~~y~~er~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~yDv~i~~~p~ 535 (708) T protein:vir:10 456 ASFIYLDNMAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPS 535 (708) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEEecceeccCCCcceeeeeccceeeEEEEEecccC Confidence 77777888888888888888888766542110 01112245666666666 Q ss_pred CCCCHHHHHHHHHHHHhCCCCC-HHHHH-----HHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccC----------- Q lcl|Aclame:pro 450 MSVNLNELSSTLNNMNSALAMS-VEEKV-----KLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGG----------- 512 (518) Q Consensus 450 i~~d~~~~~~~~~~~~~aG~~S-~~~~v-----~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~----------- 512 (518) .+.-.++.++.++.+..+.... ...++ -. +-++ .-+++.+++|+.......+.+|..-.. T Consensus 536 ~~s~r~~~~~~l~qll~~~~p~~~~~~~~~~~~l~-~~D~--p~~~ei~erir~~~~~~~~~~~~~~ee~q~~~~~q~~~ 612 (708) T protein:vir:10 536 YTARRDATVSVLTNVLSSMLPTDPMRPAIQGIILD-NIDG--EGLDDFKEYNRNQLLISGIAKPRNEKEQQIVQQAQMAA 612 (708) T ss_pred chhHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHH-hcCC--cChHHHHHHHHHhhcccccccccchhhHHHHHHHHHHH Confidence 6666777888887776544321 11211 11 1122 223444555554432222212110000 Q ss_pred -------cCCCCC Q lcl|Aclame:pro 513 -------METKGG 518 (518) Q Consensus 513 -------~~~~gG 518 (518) ....+. T Consensus 613 q~q~~~~~~e~qa 625 (708) T protein:vir:10 613 QSQPNPEMVLAQA 625 (708) T ss_pred HHHHHHHHHHHHH Confidence 000000 No 114 >protein:vir:105520 Length: 706 # NCBI annotation: phage portal protein # Family: family:all:487 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516189;genbank:gi:89885992;genbank:GeneID:3964380 Probab=98.70 E-value=1e-07 Score=58.93 Aligned_cols=486 Identities=7% Similarity=0.022 Sum_probs=220.0 Q ss_pred CCcC-chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC-----c--cccceecCchHHHH Q lcl|Aclame:pro 1 MGVW-SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP-----T--VHDKLMNSGTGNEI 72 (518) Q Consensus 1 ~~~~-~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-----~--~~~~~~~~~l~~~i 72 (518) |-=- ..+-+.++.||.-. .+.-..++.....+.+.+.. .-..|...... + ..+-.++.|+-+.+ T Consensus 1 m~e~~~~~~~~~~~~~~~~-----~~~~~~~r~~~~~d~~f~~~---~G~QW~~~~~~~l~~~~q~~grP~~~~N~i~~~ 72 (706) T protein:vir:10 1 MAESRQKQHERVMLRFDRA-----WSPQQVVREKCIEATRFVRV---PGGQWEGATVAGTKLDEQFEKYPKFEINKVATE 72 (706) T ss_pred CCcchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhcc---CCccCCHHHHHHHHhhhhhcCCCceEecchHHH Confidence 2110 00111223333211 11111222111111111100 01133221110 0 12346788999999 Q ss_pred HHHHHHHHcCCcceEEeccccccchHH----HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE---C------- Q lcl|Aclame:pro 73 VVVAAEYISGKPLSIDVTGVNGSKDEN----LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL---N------- 138 (518) Q Consensus 73 ~~~~A~ll~~e~~~i~v~~~~~~~d~~----~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d---~------- 138 (518) ++......-.-.+.+.|...+..+|+. ++..+..+...++......++...+...|-+++++..+ + T Consensus 73 v~~v~g~~~~nr~~~~v~P~~~~~d~~~Ae~l~~l~~~~~~~~~~~~a~s~Af~d~i~~G~G~~ev~~d~~~~~d~~~~~ 152 (706) T protein:vir:10 73 LNRIISEYRNNRISVKFRPGDNAASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTTSFVNEYDPMDER 152 (706) T ss_pred HHHHhhHHHhCCCceEEecCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCcceEEeeeccccccCCCCCC Confidence 999988888888899987644333444 34456667778888889999999999999999998654 1 Q ss_pred CeEEEEEEc-C-CeeEEEEE--cCcEEE--EEEEEEEEe--------cCc--------eEE----------EEEEEEeec Q lcl|Aclame:pro 139 GRPSISVHS-S-SQFWIDFK--NNEPFR--FNFFEEIPT--------SNK--------ADI----------YYLVESREI 186 (518) Q Consensus 139 ~~i~i~~v~-a-d~~~P~~~--~g~~~~--~~f~~~~~~--------~~~--------~~~----------y~~lE~he~ 186 (518) .+|+|..+. | +.++.-+. .-++.+ .+|...... ++. ... .+..||.+. T Consensus 153 ~~i~i~~v~~p~~~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~fp~~~~~~~~~~~~~~~~d~~~~d~~~~~eyy~~ 232 (706) T protein:vir:10 153 QRIAVEPIYDPARSVWFDPDAKKYDKSDALWAFCMYSVSLEKYQSEYDKAPTSLDRVGSVSWQYDWFTPDVVYIAKYYEV 232 (706) T ss_pred ccceeeeeccchhceecCchhcccChhhcceEeeeecCCHHHHHHhcCCChhhhhhhccccccccccCCCcceecccccc Confidence 256666553 2 45554332 122332 333321110 000 000 011111111 Q ss_pred ccceeeeeeccceEEEEEEEecc-CCccccccccccccccccc-----------------cccccCcccceee--cCCCc Q lcl|Aclame:pro 187 KQWDKEGKKLSGGFVTYSVIKID-GDKTTPISAERLPEQITSY-----------------LHTNDIQLNHSVS--IGLKS 246 (518) Q Consensus 187 ~~~~~~~~~~~~~~I~n~ly~~~-~~~~v~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~--tg~~~ 246 (518) ... .++.-.|+.. ....+.............+ ..|..+....++. ...+. T Consensus 233 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~g~~~l~~~~p~~~ 302 (706) T protein:vir:10 233 RKE----------SVDVISYRQPLTQEIATYDSEQIADIQDELEQAGFEEIGRRSVKRRRIYVAVVDGDGFLEKPRRIPG 302 (706) T ss_pred cce----------eEEEEEeeccccCCceeeccchhhhhHHHHhhCCchhhhhcccceeeEEEEeeccccccccCCCCCC Confidence 000 0001111110 0100000000000000000 0000011111111 11111 Q ss_pred ceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce-eeechhhhccCCCCCcccccc-CCCcc Q lcl|Aclame:pro 247 MGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTK-IAASERMFRKKVNKSTDKEEW-SMNVD 324 (518) Q Consensus 247 ~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~r-i~v~~~~l~~~~~~~~~~~~~-~~d~d 324 (518) -.|.|+|..+.-....+++..-+.+.++++..+.+|...|++.+-+-.++.. -.++..-++.. ...+ ....+ T Consensus 303 ~~~P~vP~~g~r~~~d~~~~~~G~vr~~~d~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~ 376 (706) T protein:vir:10 303 EHIPLIPVYGKRWFIDDVERVEGHIAKAMDPQRLYNLQVSMLADAAAQDPGQTPIVDMEQIRGL------EQHWEGRNRK 376 (706) T ss_pred CccceEEEeeccccccccCcccceeccchhhHHHHHHHHHHHHHHHHhcCCcccccchhHHHHH------HHHhhhcccc Confidence 2233344332222223344556788999999999999999999987443332 22221111100 0000 00111 Q ss_pred hhheeeecCCcCCCC---CCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHH Q lcl|Aclame:pro 325 EDYFMQFKGTLDAGA---KLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRK 401 (518) Q Consensus 325 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t 401 (518) ..-|..+....+.++ .....+..+++.--...+++.++.....|...+|++...+|..++ .++-.|.++......+ T Consensus 377 ~~~~l~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vsGi~~~~lG~~sn-~SG~Ai~~rq~qg~~~ 455 (706) T protein:vir:10 377 RPAFLPLRTVTDKTGNVVAPANVAGYTQAPVLNQALAALLQQTSADIQEVTGSSQAMQQMPSN-VARETVNSLLNRSDMA 455 (706) T ss_pred cccchhcccccCCCCcccccccccccCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHcCCccc-hHHHHHHHHHHHHHHH Confidence 111111110000000 001122223332234567778888888889999999999987544 5777888888777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------------------------------CCCcCCceeeEEEeCCCC Q lcl|Aclame:pro 402 IEKKKRLIQNVYEQMLWDFLYLLTGGTNNKE-------------------------------KAIMRDEIRVIIEFPDPM 450 (518) Q Consensus 402 ~~~~~~~~~~~l~~li~~il~l~~~~~~~~~-------------------------------~~~~~~~~~v~v~f~D~i 450 (518) .......+..+.+.+-+.+|.+...++.... +......++|.|+=..+. T Consensus 456 ~~~~~Dnl~~~~~~~g~~lL~li~~~y~~~R~~RI~~ed~~~~~v~in~~~~d~~~G~~~~~nDi~~g~yDv~i~~~p~~ 535 (706) T protein:vir:10 456 SFIYLDNMAKSLKRAGEIWLSMAREIYGSDREVRIVHEDGTDDIALMNAAVLDNQTGRVVALNDLSTGRYDVSVDVGPSY 535 (706) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCccceeeccceeccccCceeeeecceeeeEEEEEecccCc Confidence 7778888888888888888887765432110 011123456666666666 Q ss_pred CCCHHHHHHHHHHHHhCCC-CCHHHH-----HHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 451 SVNLNELSSTLNNMNSALA-MSVEEK-----VKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 451 ~~d~~~~~~~~~~~~~aG~-~S~~~~-----v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +.-.++..+.++.+..++. ....+. +-. +-++ .-+++.+++|+.-.....+++|.. ..... T Consensus 536 ~t~r~~~~~~m~el~~~~~p~~~~~~~l~~~~~~-~~d~--p~~~e~~e~irk~~~~q~~~~~~~----~~eq~ 602 (706) T protein:vir:10 536 SARRDATVNALTQLLQGMLPQDPMRPALMGIIID-NMEG--EGLDDFKAFNRRQLLTQGIVKPRN----QQEQA 602 (706) T ss_pred chHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHh-hcCc--cchHHHHHHHHHhhcccCCccccc----hhHHH Confidence 6667888888888776543 211221 111 1122 223344555554332222222210 01111 No 115 >protein:vir:3520 Length: 720 # NCBI annotation: P19 # Family: family:all:487 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050980;genbank:gi:9633566;genbank:GeneID:1262313 Probab=98.62 E-value=1.9e-07 Score=57.48 Aligned_cols=490 Identities=8% Similarity=0.019 Sum_probs=224.5 Q ss_pred HHHHHHHHhcCCCC--hhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCC-------CccccceecCchHHHHHHHHH Q lcl|Aclame:pro 7 MTRFIKGWLNGKPN--GSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYV-------PTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 7 ~~~~~~~w~~g~p~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-------~~~~~~~~~~~l~~~i~~~~A 77 (518) |-+-++.|++---. ..+.+.-+.+++....+.+.++. .-..|..... ....+-.+..|+-+.+++... T Consensus 1 ma~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~d~~f~~~---~G~QW~~~~~~~~~~~l~~~~~P~~~~N~i~~~v~~v~ 77 (720) T protein:vir:35 1 MAETLQKRHEQIMRKFDRAHSPQEAVREKCLEATRFARV---PGGQWEGATAAGSELGKHFEKYPKFEINKISTELNRII 77 (720) T ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc---CCCCCCHHHHHHHHHHHhhCCCCeEEEccHHHHHHHHH Confidence 44444333311000 01111122222222122111100 0123321100 111233467899999999999 Q ss_pred HHHcCCcceEEeccccccchHHH----HHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE---C-------CeEEE Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENL----TKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL---N-------GRPSI 143 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~----~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d---~-------~~i~i 143 (518) ..--.-.+.+.|...+...|+.+ +..+..+...|+.......+...++..|-+++++.++ + +.++| T Consensus 78 g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~v~~d~~~~~d~~~~~~~i~i 157 (720) T protein:vir:35 78 SEYRHNRITVKFRPGDKTASEALANKLNGLFRADYEETDGGEACDNAFDDGSTGGFGCFRLTTNLVNALDPMDERQRICL 157 (720) T ss_pred hHHHhCCCceEEEcCCCcchHHHHHHHHHHHHHHHHhcCchHHHhHHHHHhhhccceeEEeeecccccCCCCcccceeeE Confidence 99888889999987644444444 4445666678888888889999999999999999764 1 24556 Q ss_pred EEEc--CCeeEEEE--EcCcEEEE--EEEEEE-E--------ec------------------CceEEEEEEEEeecccce Q lcl|Aclame:pro 144 SVHS--SSQFWIDF--KNNEPFRF--NFFEEI-P--------TS------------------NKADIYYLVESREIKQWD 190 (518) Q Consensus 144 ~~v~--ad~~~P~~--~~g~~~~~--~f~~~~-~--------~~------------------~~~~~y~~lE~he~~~~~ 190 (518) ..|. +..++.-+ ..-++.++ +|.... . .. +... .++.|+.++... T Consensus 158 ~~v~~~~~~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~d~~~~~~-v~i~E~~~~~~~- 235 (720) T protein:vir:35 158 EPIYDPARSVWFDPDAKKYDKSDAEWAFCMYSLSAEKYKAEYNKDPATLMSGIERSWDYDWYDVDV-VYIAKYYEVKKE- 235 (720) T ss_pred ecccCchhheeecccccccChhhhhhhhhhcCCCHHHHHHhCCCccccccccccccccccccCCCc-eEEEEeeEEEEE- Confidence 5443 22333321 11112111 222110 0 00 0011 123333221110 Q ss_pred eeeeeccceEEEEEEEec-cCCcccccccccccc---cc--------------ccccccccCcccceee--cCCCcceEE Q lcl|Aclame:pro 191 KEGKKLSGGFVTYSVIKI-DGDKTTPISAERLPE---QI--------------TSYLHTNDIQLNHSVS--IGLKSMGAY 250 (518) Q Consensus 191 ~~~~~~~~~~I~n~ly~~-~~~~~v~~~~~~~~~---~~--------------~~~~~~~~~~~~~~~~--tg~~~~~~~ 250 (518) .++..+|+. .++..+......... .+ .....|..+....++. ...+.-.|. T Consensus 236 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~~g~~~l~~~~~~p~~~fP 306 (720) T protein:vir:35 236 ---------SVDVVSFQNPLTSETVTYDSDQLELVEDELADIGFIEAARRTIKRRRVYVSVVDGEGFLEKAQRIPGEHIP 306 (720) T ss_pred ---------EEEEEEeecCCCCCeeecCCccHHHHHHHHhhhccccccccceeEEEEEEEeeccchhcccCCCCCCCccc Confidence 111112221 111111111000000 00 0000111111111111 111112233 Q ss_pred EecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcccccc-CCCcchhhee Q lcl|Aclame:pro 251 LINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEW-SMNVDEDYFM 329 (518) Q Consensus 251 ~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~-~~d~d~~~~~ 329 (518) |+|.-+.-....++|..-+.+.++++..+.+|...|.+.+-+-.++.. ++....+. ..+ ....+ .++.+...|. T Consensus 307 ~vP~~g~r~~~d~~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~--~~~~a~~~-~~~--~~~~~a~~~~~~~~~l 381 (720) T protein:vir:35 307 LIPVYGKRWFIDDIERVEGHIAKAMDAQRLYNLQVSMLADSATQDTGS--IPIVGKSQ-IKT--LEKYWANRNKNRPAFL 381 (720) T ss_pred eEEEEeeeeccCCCcccceeeecchhHHHHHHHHHHHHHHHHHcCCcc--ccccCcch-HHH--HHHHhhcccccccccc Confidence 344322222224566667889999999999999999999987554432 22221110 000 00001 1111111221 Q ss_pred eecCCcCCCCC---CCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 330 QFKGTLDAGAK---LNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKK 406 (518) Q Consensus 330 ~~~~~~~~~~~---~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~ 406 (518) .++...+..+. -...+...++.---..+++.++.-...|...+|+....+|..++ .++-.|.++......+..... T Consensus 382 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGi~~~~lG~~sn-~SG~Ai~~rq~qg~~~~~~~~ 460 (720) T protein:vir:35 382 PLNEIVDKQGNIIAPPTPVGYTQPQPLNQAMAALLQQTGADIQEVTGSSQAMQPMPSN-IAKETVNHLMHRSDMSSFIYL 460 (720) T ss_pred ccccccccCcccccCCCcccccCCCCCchHHHHHHHHHHHHHHHHhCCChHHcCcccc-hHHHHHHHHHHHHHHHHHHHH Confidence 11111110000 11234455554344577888888888899999999999997554 577778887777666667777 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-----c--------------------------CCCcCCceeeEEEeCCCCCCCHH Q lcl|Aclame:pro 407 RLIQNVYEQMLWDFLYLLTGGTNNK-----E--------------------------KAIMRDEIRVIIEFPDPMSVNLN 455 (518) Q Consensus 407 ~~~~~~l~~li~~il~l~~~~~~~~-----~--------------------------~~~~~~~~~v~v~f~D~i~~d~~ 455 (518) ..+..+.+.+-+.+|.+...++... . +......++|.|+=.++...-.+ T Consensus 461 Dnl~~~~~~~g~~lL~lI~~~y~~er~~RI~~ed~~~~~v~~n~~~~d~~~g~~v~~NDi~~g~yDv~v~~~p~~~s~re 540 (720) T protein:vir:35 461 DNMAKSLKRAGEVWLSMAREVYGSDRQVRIVNADGTDDIALMSVVINDNQTGQVVAMNDLSSGRYDVTVDVGPSYTARRD 540 (720) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEeechhhhccCCCceeeeecceeeeeEEEEecccCcccHHH Confidence 8888888888888888776654311 0 01112345666666666666667 Q ss_pred HHHHHHHHHHhCCCCCHHH----HHHHH-cCCCCHHHHHHHHHHHHHhccccCCCCchhccCc----------------- Q lcl|Aclame:pro 456 ELSSTLNNMNSALAMSVEE----KVKLI-HPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM----------------- 513 (518) Q Consensus 456 ~~~~~~~~~~~aG~~S~~~----~v~~~-~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~----------------- 513 (518) +.++.++.+.. .|++.. .+.-+ ...++-.-+++.+++|+..+......+|...... T Consensus 541 q~~~~m~qll~--~~~p~~~~~~~~~~~ile~~d~p~~~e~~erirk~~~~~~~~~~~~~e~qq~~a~~qq~~qq~~~e~ 618 (720) T protein:vir:35 541 ATVSVLTNLLA--GMLPQDPMRQVLQGIILDNMEGEGLDEFKEYNRKQLLTQGVVKPRNTEEEQMVAQMIQQAQQPNAEL 618 (720) T ss_pred HHHHHHHHHHH--hcCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhhcchhcccCccChhHHHHHHHHHHHHHhHhHHH Confidence 77777776653 222111 11100 0011212233444555544332222222100000 Q ss_pred CCCCC Q lcl|Aclame:pro 514 ETKGG 518 (518) Q Consensus 514 ~~~gG 518 (518) ...++ T Consensus 619 ~~aqa 623 (720) T protein:vir:35 619 VAAQG 623 (720) T ss_pred HHHHH Confidence 00000 No 116 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=98.60 E-value=2.1e-07 Score=57.22 Aligned_cols=466 Identities=9% Similarity=0.013 Sum_probs=198.0 Q ss_pred chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhh--hhhccCCCCcc----ccceecCchHHHHHHHHHH Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLT--SLWAQGYVPTV----HDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~----~~~~~~~~l~~~i~~~~A~ 78 (518) |+..+..|.|=+ +...+..+....++..+-...+ .|++.....+. ...++-=+.+...++.+|+ T Consensus 1 ~~~~~l~~r~~~----------l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~i~dst~~~a~~~Las 70 (547) T protein:vir:10 1 MENSKIVKRLDF----------LKTDRKNVEQIWDCIRKYIMPMRSDFFSDLRSEGSINWNQNREVFDSTAGDGLETLSS 70 (547) T ss_pred CCHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHhcccccccccCCCCCcccccccccccccchHHHHHHHHHH Confidence 888888877722 2222222222222222222221 23333222211 1223333556667777776 Q ss_pred HHcCCc-----ceEEecccc--ccchHHH-------HHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC---CeE Q lcl|Aclame:pro 79 YISGKP-----LSIDVTGVN--GSKDENL-------TKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN---GRP 141 (518) Q Consensus 79 ll~~e~-----~~i~v~~~~--~~~d~~~-------~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~---~~i 141 (518) -|++-. +=+.+...+ ..+.... .+.+...+..++|+..+.+++....+.|++++..--+. +.+ T Consensus 71 ~L~~~ltPp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~d~~~~~~~ 150 (547) T protein:vir:10 71 SLHGSLTSPATKWFELAFRDKELNSDDECRKWLENATHDVYSALQDSNFNLEANETYIDLCGYGNAIMVEEEDEDEEGSV 150 (547) T ss_pred HHHHhhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEeccCCCCCCce Confidence 665542 223333222 1222222 33455678889999999999999999999988765543 457 Q ss_pred EEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeeccccee------ee-eec----cceEEEEEEEecc Q lcl|Aclame:pro 142 SISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDK------EG-KKL----SGGFVTYSVIKID 209 (518) Q Consensus 142 ~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~------~~-~~~----~~~~I~n~ly~~~ 209 (518) ++..++...|+-..+ +|++.. +|.+ .+-.-++ ..+ +|..... .. +.. ....|.+.+|... T Consensus 151 r~~~~pl~~~~v~~d~~G~v~~-i~r~-~~~t~~q----i~~--~fg~~~l~~~v~~~~~~~~~~~~~~~~v~~~v~~~~ 222 (547) T protein:vir:10 151 VFQSSPIQDSYFEEDSRGQVVN-FYRV-FRWTPAQ----IYD--RFGDEGTPEAIIKKAKEASNQAALKQEVVMCVFTRY 222 (547) T ss_pred eEEEeecceEEEeeCCCcCeee-eeee-eeccHHH----HHH--hcCcccCCHHHHHHHhcCCCcccceEEEEEEEeecc Confidence 888899888888644 455433 3321 1100000 000 0000000 00 000 0122333344322 Q ss_pred CCcccccccc---ccccccccccccccCcccceeecCC-CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHH Q lcl|Aclame:pro 210 GDKTTPISAE---RLPEQITSYLHTNDIQLNHSVSIGL-KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFF 285 (518) Q Consensus 210 ~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~tg~-~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~ 285 (518) .......... .......++....+-.....-..|. ..|+++.- -+ ...++.||+|--..+.+-++.||..- T Consensus 223 ~~~~~~~~~~~~~~~~~p~~s~~~e~~~~~~~l~esg~~e~P~~~~R----w~-~~~ge~YGrgp~~~~l~D~k~L~~l~ 297 (547) T protein:vir:10 223 DKKQNRNAGTVLAPTERPFGKKWILKEGAVQLGEEGGYYEMPAYAIR----WR-KSAGSQWGFGPSHLALPDVLTANRYV 297 (547) T ss_pred CCCCCccccceeeccccceeEEEEEecCceeeeecCCcccCCeeeee----ee-ecCCcccccchHHHHHHHHHHHHHHH Confidence 1111000000 0000011110000000000001111 12232221 12 23467889999999999999999988 Q ss_pred HHHHHHHHh-ccceeeechh-hhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHH Q lcl|Aclame:pro 286 TVYMREGEK-TKTKIAASER-MFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEY 363 (518) Q Consensus 286 s~~~~e~~~-g~~ri~v~~~-~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~ 363 (518) -......+. .++...||.+ ++......+++ ..+ .+ +...++.++...+...-...|+. T Consensus 298 ~~~l~~~~~~~~pp~~v~~~g~~~~~~~~pgg----------~~~---~~-------~~~~v~pl~~~~~~~~~~~~i~~ 357 (547) T protein:vir:10 298 ELVLRSSEKVIDPAIMVTERGLISDIDLGASG----------LTV---VR-------DMESMKPFESRARFDVSSIQLTD 357 (547) T ss_pred HHHHHHHHHHhcCceecccccccccceecCCe----------eee---cC-------CcccceeeecccchHHHHHHHHH Confidence 877776654 5566666644 33221111110 001 01 11223333333333333344444 Q ss_pred HHHHHHHHhCCCcccccc-CCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCc----- Q lcl|Aclame:pro 364 FAQKAVSKSGYNPATFNL-GNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEKAIM----- 436 (518) Q Consensus 364 ~l~~i~~~~G~s~~tf~~-d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~~~~----- 436 (518) +-+.|.... =...|.. ++..+|||||..+.+...+...-.-..+. +.|..++..++.+..... .....+ T Consensus 358 ~~~rI~~af--~~d~~~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g--~lP~~p~~l~~ 433 (547) T protein:vir:10 358 LRSAVRRIY--YVDQLQMKDSPAMTATEVQVRYELMQRLLGPTLGRLENDFLSPMIQRTFNIRFRAG--KLGELPSKLLE 433 (547) T ss_pred HHHHHHHHh--hhhhhhcCCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCchhhhc Confidence 444443322 1122233 45568999999888877666655554443 456666666666654321 111111 Q ss_pred CCceeeEEEeCCCCCCCHH-HHH----HHHHHHHh-CCC-------CCHHHHHHHHc--CCC------CHHHHHHHHHHH Q lcl|Aclame:pro 437 RDEIRVIIEFPDPMSVNLN-ELS----STLNNMNS-ALA-------MSVEEKVKLIH--PKW------EDEEIQAEVKRI 495 (518) Q Consensus 437 ~~~~~v~v~f~D~i~~d~~-~~~----~~~~~~~~-aG~-------~S~~~~v~~~~--~~~------~eeea~eev~rI 495 (518) ....+++|++-..+..... ..+ +.++.+-+ +++ +....+++.+- -+. +++|+++..++- T Consensus 434 ~~~~~~~v~~is~Laraq~~~~~~~i~~~~~~v~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr 513 (547) T protein:vir:10 434 SGKAAMDIVYTGPLSRAQKIDQAASIERWAGSTAQLAEINPEVLDIPDWDEMVRMLGSLLGAPQTLMRPKAKVTSIRKNR 513 (547) T ss_pred cCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHH Confidence 1123466666554443321 111 11111100 121 33444444431 011 444444332221 Q ss_pred HHhccccCCC---CchhccCcC--CCCC Q lcl|Aclame:pro 496 YLENAIGEVP---DPEAIGGME--TKGG 518 (518) Q Consensus 496 ~~E~~~~~~~---dp~~~~~~~--~~gG 518 (518) .+ +.+.+.+ ..-+.++++ +.++ T Consensus 514 ~~-~~q~~~qaa~~~~~g~~m~~~~~~~ 540 (547) T protein:vir:10 514 SQ-TQQKAEQAAIAEAEGNAMEAQGKGQ 540 (547) T ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcCcc Confidence 11 1111110 111222222 1222 No 117 >protein:vir:95449 Length: 584 # NCBI annotation: hypothetical protein ORF047 # Family: family:all:1548 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294640;genbank:gi:149408206;genbank:GeneID:5237016 Probab=98.56 E-value=2.8e-07 Score=56.51 Aligned_cols=470 Identities=11% Similarity=-0.012 Sum_probs=195.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHh---hccchhhhhhhh-----hhhhhhhccCCCCccccceecCchHHH- Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLP---LVPDNQKEWSKD-----SYLTSLWAQGYVPTVHDKLMNSGTGNE- 71 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~l~~~- 71 (518) |-+. +++ ++.-+. +++.-..-..+|.+ .+.--...|+.. .|....=++...+| +.++.+|-... T Consensus 1 ~~~~--~~~-~~~~~~--~~~~~~~v~~~~~~~~~~r~~~~~~w~el~~y~~a~~~~~~~~~~~~~--r~~~~~~k~~~~ 73 (584) T protein:vir:95 1 MSVK--VAE-LNSLLV--RDSSAQWVAYLWDRFNNQRRQKIEEWKELRNYVFATDTTTTSNQGLPW--KNSTTLPKLCQI 73 (584) T ss_pred CCcc--hhh-hhhhcc--ccchHHHHHHHHHHHHhhhchhhccCHHHHHHHHhhhhhhhhhccccc--ccccchhHHHHH Confidence 2211 111 111111 22111111122211 111111122111 11111111122233 34555554333 Q ss_pred ---HHHHHHHHHcCCcceEEeccccccchHH-HHHHHHHH----HhhcChHHHHHHHHHHHHhhCCEEEEEEEECC---- Q lcl|Aclame:pro 72 ---IVVVAAEYISGKPLSIDVTGVNGSKDEN-LTKQLKEA----LRIDNFDSKSVKIVELAGGSGVSAVKINILNG---- 139 (518) Q Consensus 72 ---i~~~~A~ll~~e~~~i~v~~~~~~~d~~-~~~~l~~v----l~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~---- 139 (518) |..-+-+.+|+..-=+.+-+...+++.+ .++.++.. |.+.+|...+.+.+.++...|.+++|.+|..+ T Consensus 74 ~~~i~~~l~~~~Fp~~~w~~~v~~~~~~~~~~~~~ai~~~i~dkl~e~~~~~~~~~~i~d~~~~G~~~~k~~~~~~~~e~ 153 (584) T protein:vir:95 74 RDNLHSNYFSSLFPNDDWLRWVGYGKGDSTKTKAKAIQAYMSNKCRESHFRTEVSKLIYDYIDYGNAFATVSFEAKYKEM 153 (584) T ss_pred HHHHHHHHHHhhcCccceeeeecCCCchhhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhhccCCceEEEEeEeecceee Confidence 4444455566654444443333222221 24444444 47779999999999999999999999999765 Q ss_pred ----------eEEEEEEcCCeeEEEEEcCcEEEEEEEEE--EEecCc-------eEEEEEEE-----Eee---------- Q lcl|Aclame:pro 140 ----------RPSISVHSSSQFWIDFKNNEPFRFNFFEE--IPTSNK-------ADIYYLVE-----SRE---------- 185 (518) Q Consensus 140 ----------~i~i~~v~ad~~~P~~~~g~~~~~~f~~~--~~~~~~-------~~~y~~lE-----~he---------- 185 (518) +++|+.++|..+||--+=+.+.++.|+.. ++.++- ...|+-++ .|+ T Consensus 154 ~e~~~v~~~~~prieriSP~d~~~Dpsa~~i~d~~fivrs~~T~~~L~~l~~~~~~~~y~~d~v~~~~~~~~~~~~~~~~ 233 (584) T protein:vir:95 154 TDGTLVPDYIGPRLVRISPLDIVFNPLATSISDTFKIVRSVKTKGELMRLAQDEPEQSYWLEALKRREEICRHLGGYSVE 233 (584) T ss_pred eccccccccccceEEeeChhheeecCCCCCccchhhhhhhhhhHHHHHHHHhhcCccccchHHHHHHHHhccCCCCCccc Confidence 58999999999997533344555444321 110000 00011110 011 Q ss_pred -cccc--------eeeeeeccceEEEEEEEeccC-C-ccccccccccccccccccccccCccccee-----ecCCCc-ce Q lcl|Aclame:pro 186 -IKQW--------DKEGKKLSGGFVTYSVIKIDG-D-KTTPISAERLPEQITSYLHTNDIQLNHSV-----SIGLKS-MG 248 (518) Q Consensus 186 -~~~~--------~~~~~~~~~~~I~n~ly~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~tg~~~-~~ 248 (518) .... ....+-+++++++-..|-+.- + ....+...+ +..+ + ...+.+ ++.... || T Consensus 234 ~~~~~~~~~~d~~~~~~ey~~~~~V~vl~~~g~~~~~~~~e~~~~~----iv~v--~---~g~~iIR~~~np~~~~~~PF 304 (584) T protein:vir:95 234 DFDKAAGFDVDGFGNLYEYYMSDWVEILEFYGDYHDKETGELQTNR----IITV--V---DRSTEVRNESIPTWFGSAPI 304 (584) T ss_pred ccccccccccccccccccccCCceeEEEeecccccccccCCCcccc----eEEE--E---eccEEEEeeecCCCCCCCCE Confidence 0000 001111122222222221100 0 000000000 0000 0 001111 122233 45 Q ss_pred EEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCCcchhhe Q lcl|Aclame:pro 249 AYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYF 328 (518) Q Consensus 249 ~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~ 328 (518) ++..+-+ ...|.||.|+.+.+.+.++.+|...-++++-+...-.. ++..++..... .+.+...++ T Consensus 305 ~~~~~~p-----~~~s~yG~gi~~ll~d~Q~~lna~~r~~iDnl~l~~~p--v~k~~~~~~~~--------~~~pg~~~~ 369 (584) T protein:vir:95 305 YHVGWRF-----RPDNLWAMGPLDNLVGMQYRIDHLENAKADAVDLIIQP--PLKIIGEVEEF--------VWGPGAEIH 369 (584) T ss_pred EEEccee-----eeccccCCCchhhhhhHHHHHhHHHHHHHHHHHHhcCc--ceeeccccchh--------cccCCceee Confidence 4433322 33678999999999999999999999999887654333 23444332211 111111111 Q ss_pred eeecCCcCCCCCCCccceEecccc-cHHHHHHHHHHHHHHHHHHhCCCccccccCC-ccchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 329 MQFKGTLDAGAKLNDMIQFMQGDF-RDGSYRETMEYFAQKAVSKSGYNPATFNLGN-REVKATEIWSLQDATVRKIEKKK 406 (518) Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~i-r~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~-~~~TAtEi~s~~~~t~~t~~~~~ 406 (518) . +.. ..++.+.|.- .+-+-...|+.+...++..+|.|+..-|.++ .++|||++....++.-.-+..+. T Consensus 370 ~--------~~~--~~~q~~~p~a~~~~s~~~~lq~~e~~me~~sGvp~~~~G~~~~~~~TAtg~s~l~naa~~~~r~~~ 439 (584) T protein:vir:95 370 L--------DQG--GDVQEIAKNVNYIINADNQIQMLEDRMELYAGAPREAMGIRTPGEKTAFEVQQLGNAAGRIFQEKV 439 (584) T ss_pred c--------CCC--CCcceecCchhhhhHHHHHHHHHHHHHHhhhCCChhhcccccchhhhHHHHHHHHHHHHHHHHHHH Confidence 1 111 1245555531 2222234466677778899999998888864 45799998777776666566666 Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhccccCC-C-------------cCCceeeEEEeC---CCC--CCCHHHHHHHHHHHHh Q lcl|Aclame:pro 407 RLIQNVY-EQMLWDFLYLLTGGTNNKEKA-I-------------MRDEIRVIIEFP---DPM--SVNLNELSSTLNNMNS 466 (518) Q Consensus 407 ~~~~~~l-~~li~~il~l~~~~~~~~~~~-~-------------~~~~~~v~v~f~---D~i--~~d~~~~~~~~~~~~~ 466 (518) ..++..| +.++..+.+..... ..... + .+...+++-+|+ ++. ....++..+......+ T Consensus 440 ~~f~~~ll~~l~~ll~~~~~~n--md~~~~vr~~n~e~~~~~f~~i~r~Dl~g~~~~va~Ga~~~~~keq~~q~l~~ilq 517 (584) T protein:vir:95 440 TTFEVELLEPVLNAMLETATRN--MDGSDVIRVMDTDLGVKEFMSVTREDITANGKIRPIGARHFGKQAQDLQNLVGIFN 517 (584) T ss_pred HHHHHHHHHHHHHHHHHHHHhh--ccccCceeeeccccccccccccChhhhccCeeEEeehhhHHHHHHHHHHHHHHHHH Confidence 6666654 77777776664331 11111 0 111123333333 111 0111221222222222 Q ss_pred --CC-----CCCH---HHHHHHH--cCCC---CHHHHHHH---H-HHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 --AL-----AMSV---EEKVKLI--HPKW---EDEEIQAE---V-KRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 --aG-----~~S~---~~~v~~~--~~~~---~eeea~ee---v-~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .| -++. ...|..+ .|++ +++-+.++ . +.+..-|.... .-..++.+|- T Consensus 518 ~~~~~~i~p~~~~~~l~~~ladl~~~p~~~~~~~~~~~~~Q~~~q~~~~~~q~~~~-----~~~~~~~~~~ 583 (584) T protein:vir:95 518 SQIGQMILPHTSGKALATFVDDVTGLQGYEIFRPNVAVAEQAETQSLVAQAQEDLQ-----LQAQMPAEGA 583 (584) T ss_pred hhhhhhccccchHHHHHHHHHHHhCCCcccccCCCcccchhHHHHhhhHHHHHHHH-----HHHhhhhccC Confidence 11 1221 1222222 1211 11000000 0 00000000000 0011222222 No 118 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=98.55 E-value=3.1e-07 Score=56.29 Aligned_cols=386 Identities=13% Similarity=0.016 Sum_probs=161.9 Q ss_pred CCcCchHHHH--H---------HHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCC-CccccceecCch Q lcl|Aclame:pro 1 MGVWSVMTRF--I---------KGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYV-PTVHDKLMNSGT 68 (518) Q Consensus 1 ~~~~~~~~~~--~---------~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~~l 68 (518) ||.|+++..+ | .-.-.|+|+.-+...-.+....-................|..... .-.....+.++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~ 80 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDV 80 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHH Confidence 9999999886 2 334467776544322221110000000000000000011211111 111122223333 Q ss_pred HHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhc--ChHHHHHHHHHHHHhhCCEEEEEEE-E-CCeE-EE Q lcl|Aclame:pro 69 GNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRID--NFDSKSVKIVELAGGSGVSAVKINI-L-NGRP-SI 143 (518) Q Consensus 69 ~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn--~f~~~~~~~~e~~~a~G~~~~k~~~-d-~~~i-~i 143 (518) --..++.+|+-+-+=|.. +-......++ ....+.. .=| --...+.+.+...+.+|+.++.+.. + +|++ .+ T Consensus 81 v~acV~~Ia~~iA~lpl~--~~~~~~~~~~-~~~ll~~--~PN~~~t~~~f~~~l~~~lllGnay~~~i~r~~~G~~~~L 155 (409) T protein:vir:83 81 AWACIDLNASVLSSMPIY--RMRNGRIIDS-VAWMSNP--DPEVYTSWQEFAKQLFWDFQLGEAFVLPMAHGSDGYPIRF 155 (409) T ss_pred HHHHHHHHHHhhccCceE--EeeCCccccc-hhhhccc--CCCCCCCHHHHHHHHHHHHhhCCcEEEEEEECCCCcEEEE Confidence 344566666666554433 3221111111 1111111 111 1122344455555567887765432 2 3443 34 Q ss_pred EEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc Q lcl|Aclame:pro 144 SVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE 223 (518) Q Consensus 144 ~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~ 223 (518) ..++|+.+-+.... +. .++ |+|.. .. . T Consensus 156 ~pl~p~~v~v~~~~---------------~g-~~~--------------------y~~~~-------~~-~--------- 182 (409) T protein:vir:83 156 RVVPPWLVNVELKK---------------GA-RRE--------------------YRIGG-------LN-V--------- 182 (409) T ss_pred EEECCcceEEEEcC---------------Cc-eEE--------------------EEEcc-------cc-C--------- Confidence 44555444332111 00 000 11100 00 0 Q ss_pred ccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-Hhccceeeec Q lcl|Aclame:pro 224 QITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREG-EKTKTKIAAS 302 (518) Q Consensus 224 ~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~-~~g~~ri~v~ 302 (518) ..+ +.|++....+ +..+|+|-+.-+...|.-.. +..++...+ +.|-.. T Consensus 183 -----------~~e-----------iiHir~~~~~----~~~~G~spi~~~~~~i~~~~-a~~~~~~~~f~nga~p---- 231 (409) T protein:vir:83 183 -----------TDE-----------ILHIRYQGNT----ADAHGHGPLESAAPRQVVIG-LLQKYVQNLAETGGVP---- 231 (409) T ss_pred -----------ccc-----------eEEeCCCCCC----CCcccccHHHHHHHHHHHHH-HHHHHHHHHHhcCCCc---- Confidence 000 2344432111 23359998887777776443 345555443 444331 Q ss_pred hhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccC Q lcl|Aclame:pro 303 ERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLG 382 (518) Q Consensus 303 ~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d 382 (518) ..++.....-...........-...+..-.+..-.-.++....+..+.+-.+.++++..+...+.|....|++|..+|.. T Consensus 232 ~gil~~~~~ls~e~~~~~~~~~~~~~~~nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~ 311 (409) T protein:vir:83 232 LYWLGVERRLSETEAVDLMDRWIESRSKYAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLP 311 (409) T ss_pred ceEeecCCCCCHHHHHHHHHHHHHhhCCccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCC Confidence 22222211100000000000000011110000000011112223334455677889988888899999999999999874 Q ss_pred Cc--cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 383 NR--EVKATEIWSLQDATV-RKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 383 ~~--~~TAtEi~s~~~~t~-~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) +. ..|-+-+.......+ .|+.-....|+.+|..-+ . ...+.+.+++++.+..|..++++ T Consensus 312 ~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~L--------------l----~~~~~~~f~~~~llr~d~~~r~~ 373 (409) T protein:vir:83 312 GATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWA--------------L----PSPQHLELNRDDYTRPSLVERAT 373 (409) T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------C----CCCcEEEeehhhhhccCHHHHHH Confidence 32 222111211222222 233333333333332210 0 11235778888888899999999 Q ss_pred HHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcC-CCCC Q lcl|Aclame:pro 460 TLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGME-TKGG 518 (518) Q Consensus 460 ~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~-~~gG 518 (518) .+++++++|+|+.-++.+.+ + ++ |.. |+.. +.|| T Consensus 374 ~~~~~~~~G~lT~NE~R~~~--g--------------------lp--p~~-ggd~l~~~g 408 (409) T protein:vir:83 374 AYKIMIEAGVMEPNEARAME--R--------------------LH--SEA-AAVRLSGGG 408 (409) T ss_pred HHHHHHhCCCcCHHHHHHHh--C--------------------CC--CCC-CCcccCCCC Confidence 99999999999877654332 1 12 211 3333 3344 No 119 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=98.53 E-value=3.4e-07 Score=56.03 Aligned_cols=475 Identities=9% Similarity=0.010 Sum_probs=193.3 Q ss_pred HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhh--hhccC-CCCccccceecCchHHHHHHHHHHHHcCC Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTS--LWAQG-YVPTVHDKLMNSGTGNEIVVVAAEYISGK 83 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~w~~~-~~~~~~~~~~~~~l~~~i~~~~A~ll~~e 83 (518) |-...+.++. ..++.+...+..+....++..+-...+. |=+.. ..-..+..++-=+.+...++.+|+-|++- T Consensus 1 m~~~~~~~l~-----~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~Las~l~~~ 75 (559) T protein:vir:95 1 MAETTKERLN-----KQFAQLESERQSFEPHWRELSDYINPRGSRFLTSEVNRNDRRNTRIIDSTGTMAARTLASGMMSG 75 (559) T ss_pred CChhhHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHhccccCCcCCCCCCcccccccccccchHHHHHHHHHHHHHHh Confidence 3333333331 1223333333333333333322221111 10111 11111223344445667777777666554 Q ss_pred c-----ceEEeccc--cccchHHHHH-------HHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECC-eEEEEEEcC Q lcl|Aclame:pro 84 P-----LSIDVTGV--NGSKDENLTK-------QLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG-RPSISVHSS 148 (518) Q Consensus 84 ~-----~~i~v~~~--~~~~d~~~~~-------~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~-~i~i~~v~a 148 (518) . +=+.+... +..+....++ .+...|..++|+..+.+++....+.|.+++-+-.+.+ .+++..++. T Consensus 76 ltpp~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~Gta~l~~~~d~~~~~r~~~~~l 155 (559) T protein:vir:95 76 ITSPARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKSNLYQSLPQLYGSLGTYSTGAMAVLDDDEDIIRTMPFPI 155 (559) T ss_pred hcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeEeecCCCceeEEEEeec Confidence 3 22333322 2222223333 3556788899999999999999999999986655543 357888888 Q ss_pred CeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccce--------eeeee-ccceEEEEEEEeccCCccccccc Q lcl|Aclame:pro 149 SQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWD--------KEGKK-LSGGFVTYSVIKIDGDKTTPISA 218 (518) Q Consensus 149 d~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~--------~~~~~-~~~~~I~n~ly~~~~~~~v~~~~ 218 (518) ..|+-.-+ +|++.. +|.+...+- ++. .+ +|.... ..... +....|.|.+|........... T Consensus 156 ~~~~v~~d~~G~vd~-i~r~~~~t~-~ql----~~--~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~~~~~~- 226 (559) T protein:vir:95 156 GSYYLANSPRGSVDT-CFRKFSMTV-RQL----VQ--EFGLNNVSESVKSMWESGTYEKWIEVMHSVYPNIDRDTSKLD- 226 (559) T ss_pred CeEEEeeCCCCCeEE-EEEeEecCH-HHH----HH--HcCcccCCHHHHHHHhcCCCCCeEEEEEEEeccccccccccc- Confidence 88888644 355433 333211100 000 00 000000 00000 1123455555532211110000 Q ss_pred cccccccccccccccCccccee-ecCC-CcceEEEecCcccCccccCCCCCcc-hhhhhHHHHHHHHHHHHHHHHHHHh- Q lcl|Aclame:pro 219 ERLPEQITSYLHTNDIQLNHSV-SIGL-KSMGAYLINNSPSNTRYPHLNLGES-DLSQCTNYLFAVDYFFTVYMREGEK- 294 (518) Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~-~tg~-~~~~~~~~~n~~~N~~~~~sPlG~S-~~~~~~~~i~~lD~~~s~~~~e~~~- 294 (518) .......++....+....+.. ..|. ..|+++. +-+ ...++.||+| --..+.+-++.|+..--....-.+. T Consensus 227 -~~~~pf~s~~~e~~~~~~~~l~esg~~e~P~~~~----Rw~-~~~ge~YGrg~P~~~al~d~k~L~~l~~~~l~~~~~~ 300 (559) T protein:vir:95 227 -SKNKPFKSVYYEVGGDNDKLLRESGFDEFPIMAP----RWE-VNGEDVYGSSCPGMLALGPVKALQLLQKRKSQLIDKA 300 (559) T ss_pred -cccceEEEEEEEecCCCceeeecCCcccCCccce----eee-ecCCccccccchHHHhhHHHHHHHHHHHHHHHHHHHH Confidence 000001111111111111111 1121 1222221 112 2346789999 4899999999999888877776654 Q ss_pred ccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 295 TKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGY 374 (518) Q Consensus 295 g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~ 374 (518) .++.+.||.+......+ ..+.-..|.. ...+.+.-.+....++++.. ....|+.+-+.|....-. T Consensus 301 ~~pp~~v~~~~~~~~~~---------l~pgg~~~~~----~~~~~~~i~p~~~~~~~~~~--~~~~i~~~~~rI~~af~~ 365 (559) T protein:vir:95 301 TNPPMVAPTSLKNQRAS---------LLPGDITYID----QITGQDGFRPAYLVNPSTAD--LVADIQDTRQIINSAYFV 365 (559) T ss_pred hcCceecccccccccee---------eeccceeeeC----CCCCcccceeecccccchHH--HHHHHHHHHHHHHHHhhh Confidence 66777777665321111 0011111111 01111111122222344322 223344443334333211 Q ss_pred Cc-cccc-cCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCC--cCCceeeEEEeCCC Q lcl|Aclame:pro 375 NP-ATFN-LGNREVKATEIWSLQDATVRKIEKKKRLI-QNVYEQMLWDFLYLLTGGTNNKEKAI--MRDEIRVIIEFPDP 449 (518) Q Consensus 375 s~-~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~-~~~l~~li~~il~l~~~~~~~~~~~~--~~~~~~v~v~f~D~ 449 (518) .. ..+. -+...+|||||....+.......-.-..+ .+.|..++..++.+...... .... .....+++|++--. T Consensus 366 d~~~~l~~r~~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~--lP~~p~~l~~~~i~v~~is~ 443 (559) T protein:vir:95 366 DLFMMLQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRKNM--LPPPPDVMEGMPLKVEYISV 443 (559) T ss_pred hhHHHhhcCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcccccCcceEEEeecH Confidence 00 0122 24456899999988887766655544444 44566777777776544311 1111 11123466666544 Q ss_pred CCCCH-H-------HHHHHHHHHHhCC-----CCCHHHHHHHHc--CC------CCHHHHHHHHHHHHHhcc-------- Q lcl|Aclame:pro 450 MSVNL-N-------ELSSTLNNMNSAL-----AMSVEEKVKLIH--PK------WEDEEIQAEVKRIYLENA-------- 500 (518) Q Consensus 450 i~~d~-~-------~~~~~~~~~~~aG-----~~S~~~~v~~~~--~~------~~eeea~eev~rI~~E~~-------- 500 (518) +..-. . ..++.+..+.+.+ .+....+++.+- -+ -+++|+++.-++-.+.++ T Consensus 444 La~aqk~~~~~~i~~~~~~~~~laq~~Pevld~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~rqqr~~~qq~~q~~~~~ 523 (559) T protein:vir:95 444 MAQAQKSIGLSSLASTVNFIGQLAQVKPEALDKLNVDQAIDAFADMSGVSPTVIVPQEQVEQARQQRAQQQQQQQMMAMG 523 (559) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCHHHHHHHHHHHhCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHH Confidence 42211 0 0111111111111 133444444431 01 133333221111000000 Q ss_pred ---cc--------CCCCch----hccCcCCCCC Q lcl|Aclame:pro 501 ---IG--------EVPDPE----AIGGMETKGG 518 (518) Q Consensus 501 ---~~--------~~~dp~----~~~~~~~~gG 518 (518) +. ..+.|. ..+.+.+.|| T Consensus 524 ~~aa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 556 (559) T protein:vir:95 524 MAAAQGVKTLSEAKTSDPSVLSAMANAVSGQGG 556 (559) T ss_pred HHHHHhhhccccccCCChhHHHHHHHhhcCccc Confidence 00 000111 1111122222 No 120 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=98.47 E-value=5.1e-07 Score=55.07 Aligned_cols=478 Identities=8% Similarity=-0.004 Sum_probs=195.8 Q ss_pred HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhh--hhcc-CCCCccccceecCchHHHHHHHHHHHHcCC Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTS--LWAQ-GYVPTVHDKLMNSGTGNEIVVVAAEYISGK 83 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~w~~-~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e 83 (518) |-...+.++. ++++.....+..+....++..+-...+. |=+. ....+.+..++-=+.+...++.+|+-|++- T Consensus 1 m~~~~~~~l~-----~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~Las~l~~~ 75 (556) T protein:vir:73 1 MAETEKERLL-----KQLAQLKNERTSFESHWLDLSDFINPRGSRFLTSDVNRDDRRNTKIVDPTGSMAQRILSSGMMSG 75 (556) T ss_pred CChhhHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHhccccCCcCCCCCCcchhhcCccccchHHHHHHHHHHHHHHh Confidence 3232223321 1223333333333333333322221111 1010 111112223444455667777777666554 Q ss_pred c-----ceEEecccc--ccchHH-------HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECC-eEEEEEEcC Q lcl|Aclame:pro 84 P-----LSIDVTGVN--GSKDEN-------LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG-RPSISVHSS 148 (518) Q Consensus 84 ~-----~~i~v~~~~--~~~d~~-------~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~-~i~i~~v~a 148 (518) . +=+.+...+ ..+... ....+...|..++|+..+.+++....+.|.+++-+-.+.+ -+++..++. T Consensus 76 ltpp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~r~~~~~l 155 (556) T protein:vir:73 76 ITSPARPWFKLATPDPDMMDYGPVKIWLEVVQRRMNEVFNKSNLYQSLPVMYASLGTFGTGAMAVMEDDQDVIRTMPFPI 155 (556) T ss_pred hcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeeecCCceEEEEEeec Confidence 3 223333222 222222 3334566788899999999999999999999986555533 457778888 Q ss_pred CeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEee--cccc----eeeeeeccceEEEEEEEeccCCcccccccccc Q lcl|Aclame:pro 149 SQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESRE--IKQW----DKEGKKLSGGFVTYSVIKIDGDKTTPISAERL 221 (518) Q Consensus 149 d~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he--~~~~----~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~ 221 (518) ..|+-.-+ +|++.. +|-+ .+..-++.+ -+|-+ .... ...-.......|.|.+|.......... ... T Consensus 156 ~~~~~~~d~~G~vd~-i~r~-~~~t~~ql~---~~fg~~~l~~~v~~~~~~~~~~~~~~v~~~V~pr~~~~~~~~--~~~ 228 (556) T protein:vir:73 156 GSYYLANSPRGSVDT-CIRQ-FSMTVRQMV---QEFGLDNVSTSVKGMWENGTYETWVEVNHCITPNVNRDSGKM--DSK 228 (556) T ss_pred ceeEEeeCCCCCeEE-EEEE-EeccHHHHH---HHcCcccCCHHHHHHHhcCCccceEEEEEEEecccccccccc--Ccc Confidence 88887644 355433 3322 111000000 00000 0000 000000112345555553222111000 000 Q ss_pred ccccccccccccCcccceee-cCC-CcceEEEecCcccCccccCCCCCcch-hhhhHHHHHHHHHHHHHHHHHHHh-ccc Q lcl|Aclame:pro 222 PEQITSYLHTNDIQLNHSVS-IGL-KSMGAYLINNSPSNTRYPHLNLGESD-LSQCTNYLFAVDYFFTVYMREGEK-TKT 297 (518) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~-tg~-~~~~~~~~~n~~~N~~~~~sPlG~S~-~~~~~~~i~~lD~~~s~~~~e~~~-g~~ 297 (518) .....++....+.....++. .|. ..|+++.- -+ ...++.||+|. -..+.+-++.|+..--....-.+. .++ T Consensus 229 ~~p~~s~~~~~~~~~~~vl~esg~~e~P~~~~R----w~-~~~ge~YGrg~P~~~~lgD~k~L~~l~~~~l~~~~~~~~p 303 (556) T protein:vir:73 229 NKPYRSVYFESGGDSDKLLRESGFDEFPILAPR----WE-VNGEDVYASSCPGMLALGQVKALQVEQKRKAQLIDKATNP 303 (556) T ss_pred cceEEEEEEEecCCCceecccCCcccCCceeee----ee-ecCCcccccCccHHHhHHHHHHHHHHHHHHHHHHHHHhcC Confidence 11111111111111111111 121 12222221 11 23467889995 899999999999887777766654 667 Q ss_pred eeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCC-c Q lcl|Aclame:pro 298 KIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYN-P 376 (518) Q Consensus 298 ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s-~ 376 (518) .+.||.+......+ ..+.-..|.... .+.++-.++...++++. ...+.|+.+-+.|....=.. . T Consensus 304 p~~v~~~~~~~~~~---------~~pgg~~~~~~~----~~~~~i~p~~~~~~d~~--~~~~~i~~~~~rI~~af~~d~~ 368 (556) T protein:vir:73 304 PMVAPTSLKNQRVS---------LLPGDVTYLDVI----SGQDGFKPAYLVNPNTA--DLLADIQDTRQTINSAYFVDLF 368 (556) T ss_pred ceecccccccccee---------eccCccccccCC----CCccceeeeccccccHH--HHHHHHHHHHHHHHHHhhcchh Confidence 77777664221101 111111111111 11122222333345533 23334444444443332110 0 Q ss_pred cccc-cCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCC--cCCceeeEEEeCCCCCC Q lcl|Aclame:pro 377 ATFN-LGNREVKATEIWSLQDATVRKIEKKKRLI-QNVYEQMLWDFLYLLTGGTNNKEKAI--MRDEIRVIIEFPDPMSV 452 (518) Q Consensus 377 ~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~-~~~l~~li~~il~l~~~~~~~~~~~~--~~~~~~v~v~f~D~i~~ 452 (518) ..++ .+...+|||||....+.......-.-..+ .+.|..++..++.+...... +... .....+|+|++--.+.. T Consensus 369 ~~l~~~~~~r~TAtEv~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~--lP~~P~~l~~~~i~v~yis~La~ 446 (556) T protein:vir:73 369 MMLQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDEALNPLIDRVFSIMARKNM--LPEPPDVLQGMPLRIEYISVMAQ 446 (556) T ss_pred hhhccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCchhhcCceeEEEeecHHHH Confidence 0122 24456899999988887776665544444 44566777777766543211 1111 11123466776544432 Q ss_pred CHH-HHH-------HHHHHHHhCC-----CCCHHHHHHHHc--CC------CCHHHHHHHHHHHHHhccccC-------- Q lcl|Aclame:pro 453 NLN-ELS-------STLNNMNSAL-----AMSVEEKVKLIH--PK------WEDEEIQAEVKRIYLENAIGE-------- 503 (518) Q Consensus 453 d~~-~~~-------~~~~~~~~aG-----~~S~~~~v~~~~--~~------~~eeea~eev~rI~~E~~~~~-------- 503 (518) ... ..+ +.+..+.+.+ .+....+++.+. -+ -+++++++.-++-.++|..+. T Consensus 447 aqk~~~~~~i~~~~~~~~~laq~~Pe~~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~rq~r~~~qq~~~~~~~~~~a 526 (556) T protein:vir:73 447 AQKSIGLTSLSQTVGFIGQLAQFKPEALDKLDVDQAIDAFSEMSGVSPTVIVPQEQVQGIREERAKQAQAAQAMAMGQAA 526 (556) T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHhcCCHHHHHHHHHHHcCCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 211 111 1111111111 133444444331 01 234444332211111110000 Q ss_pred -----------CCCchhccCcCCCCC Q lcl|Aclame:pro 504 -----------VPDPEAIGGMETKGG 518 (518) Q Consensus 504 -----------~~dp~~~~~~~~~gG 518 (518) .++|......-...| T Consensus 527 ~~~~~~~~~~~~~~~~~l~~~~~~~g 552 (556) T protein:vir:73 527 AQGAKTLSETQTSDPSALTAIANAAG 552 (556) T ss_pred HHHHHHhhhccCCCHHHHHHHHHhhc Confidence 012221111111112 No 121 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=98.43 E-value=6.9e-07 Score=54.37 Aligned_cols=474 Identities=9% Similarity=-0.016 Sum_probs=189.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhh--hhhccCCCCccc-cceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLT--SLWAQGYVPTVH-DKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~-~~~~~~~l~~~i~~~~A 77 (518) |-=....+...|.| +.....+..+....++..+-...+ .|+......+.. ..++-=+.+...++.+| T Consensus 1 M~~~~~~~~l~~r~----------~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LA 70 (555) T protein:vir:98 1 MAEQTERKLLLSRW----------GQLRTERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLA 70 (555) T ss_pred CCCcccHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHH Confidence 33333333333333 122222222222222222222111 133322222222 23344455777777777 Q ss_pred HHHcCCc-----ceEEecccccc--chHH-------HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC-CeEE Q lcl|Aclame:pro 78 EYISGKP-----LSIDVTGVNGS--KDEN-------LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN-GRPS 142 (518) Q Consensus 78 ~ll~~e~-----~~i~v~~~~~~--~d~~-------~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i~ 142 (518) +-|.+-. +=+.+...+.. +... ....+...|..++|+..+.+++....+.|.+++-.--+. +.++ T Consensus 71 a~L~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~r 150 (555) T protein:vir:98 71 AGMMAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVY 150 (555) T ss_pred HHHHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEE Confidence 7665543 22333332221 1112 233455688889999999999999999999997544443 3467 Q ss_pred EEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccce--------eeeee-ccceEEEEEEEeccCCc Q lcl|Aclame:pro 143 ISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWD--------KEGKK-LSGGFVTYSVIKIDGDK 212 (518) Q Consensus 143 i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~--------~~~~~-~~~~~I~n~ly~~~~~~ 212 (518) +..++...|+-.-+ +|++ ..+|-+ .+-.-++- . .+|.... ..... .....|.|.+|.-.... T Consensus 151 f~~~pl~~~~v~~d~~G~v-d~i~r~-~~~t~~ql----~--~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~ 222 (555) T protein:vir:98 151 HHSLTAGEYAIAADNQGRV-NTLYRE-FQITVAQM----V--REFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADRD 222 (555) T ss_pred EEEeecceeEEeeCCCCCE-EEEEEE-EeccHHHH----H--HhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCcC Confidence 77788888888644 3554 333322 11000000 0 0000000 00000 01133444454322111 Q ss_pred cccccccccccccccccccccCcccceee-cCC-CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 TTPISAERLPEQITSYLHTNDIQLNHSVS-IGL-KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR 290 (518) Q Consensus 213 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-tg~-~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~ 290 (518) .... ........++....+.+...+.. .|. ..|+++.-.+ ...++.||+|--..+.+-++.|+..--+... T Consensus 223 ~~~~--~~~~~p~~s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~-----~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~ 295 (555) T protein:vir:98 223 PSKR--DDRNMAWKSVYFEPGADETRTLRESGYRSFRALCPRWA-----LVGGDIYGNSPAMEALGDVRQLQHEQLRKAQ 295 (555) T ss_pred cCCC--CccccceEEEEEEeccCCccccccCCcccCCceeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHHHH Confidence 0000 00001111111111111111111 111 1233322222 2346778999999999999999884444444 Q ss_pred HHH-hccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 EGE-KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAV 369 (518) Q Consensus 291 e~~-~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~ 369 (518) -.. ..++...||++...... ...+...-|.. .+...+...-.+++......-.+.|+.+-+.|. T Consensus 296 ~~~~~~~pp~~v~~~~~~~~~---------~~~pgg~~~v~------~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~ 360 (555) T protein:vir:98 296 AIDYKSNPPLQLPVSAKNQDI---------STVPGGLSYVD------AAAPNGGIRTAFEVNLDLSHLLADIVDVRERIK 360 (555) T ss_pred HHHHHhcCceeeccccccccc---------eeccccccccc------cCCCCcceecccccccchHHHHHHHHHHHHHHH Confidence 443 35556666665421110 01111111111 111111111122332223334444555555554 Q ss_pred HHhCCCc--ccccc-CCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCC--cCCceeeE Q lcl|Aclame:pro 370 SKSGYNP--ATFNL-GNREVKATEIWSLQDATVRKIEKKKRLI-QNVYEQMLWDFLYLLTGGTNNKEKAI--MRDEIRVI 443 (518) Q Consensus 370 ~~~G~s~--~tf~~-d~~~~TAtEi~s~~~~t~~t~~~~~~~~-~~~l~~li~~il~l~~~~~~~~~~~~--~~~~~~v~ 443 (518) ... +.. ..+.. +...+|||||..+.+...+...-.-..+ .+.|.-++.-++.+...... .... .....+|+ T Consensus 361 ~af-~~dlf~~l~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~--lP~~P~~l~~~~i~ 437 (555) T protein:vir:98 361 ASF-YADLFLMLANGTNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANI--LPPPPQEMQGVDLN 437 (555) T ss_pred HHh-hcchhhhccCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCchhhcCceeE Confidence 333 111 11222 4455899999888877666666544443 45566666666666543211 1111 11123466 Q ss_pred EEeCCCCCCCHH-HHHH----HHHHHH-hCCC-------CCHHHHHHHH---cC---C--CCHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 444 IEFPDPMSVNLN-ELSS----TLNNMN-SALA-------MSVEEKVKLI---HP---K--WEDEEIQAEVKRIYLENAIG 502 (518) Q Consensus 444 v~f~D~i~~d~~-~~~~----~~~~~~-~aG~-------~S~~~~v~~~---~~---~--~~eeea~eev~rI~~E~~~~ 502 (518) |++--++..-.. ..+. .++.+. -+++ +-...+++.+ .+ . -++||+++..+. ++++++. T Consensus 438 v~yis~La~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~q-r~~~~q~ 516 (555) T protein:vir:98 438 VEFVSMLAQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQ-RADQQQA 516 (555) T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH-HHHHHHH Confidence 666544433211 1111 111100 0122 2234444333 11 0 133433321111 1111110 Q ss_pred CCC-----------------Cch----hccCcCCCCC Q lcl|Aclame:pro 503 EVP-----------------DPE----AIGGMETKGG 518 (518) Q Consensus 503 ~~~-----------------dp~----~~~~~~~~gG 518 (518) +.. +.. -.+-....|| T Consensus 517 ~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (555) T protein:vir:98 517 AQQAALLNQGADTAAKLGSVDTSKQNALTDVTRAFSG 553 (555) T ss_pred HHHHHHHHHHHHHHHHhcccccCcchhHHHHHhhhcc Confidence 000 000 0001112233 No 122 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=98.43 E-value=6.9e-07 Score=54.37 Aligned_cols=474 Identities=9% Similarity=-0.016 Sum_probs=189.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhh--hhhccCCCCccc-cceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLT--SLWAQGYVPTVH-DKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~-~~~~~~~l~~~i~~~~A 77 (518) |-=....+...|.| +.....+..+....++..+-...+ .|+......+.. ..++-=+.+...++.+| T Consensus 1 M~~~~~~~~l~~r~----------~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LA 70 (555) T protein:vir:10 1 MAEQTERKLLLSRW----------GQLRTERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLA 70 (555) T ss_pred CCCcccHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHH Confidence 33333333333333 122222222222222222222111 133322222222 23344455777777777 Q ss_pred HHHcCCc-----ceEEecccccc--chHH-------HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC-CeEE Q lcl|Aclame:pro 78 EYISGKP-----LSIDVTGVNGS--KDEN-------LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN-GRPS 142 (518) Q Consensus 78 ~ll~~e~-----~~i~v~~~~~~--~d~~-------~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i~ 142 (518) +-|.+-. +=+.+...+.. +... ....+...|..++|+..+.+++....+.|.+++-.--+. +.++ T Consensus 71 a~L~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~r 150 (555) T protein:vir:10 71 AGMMAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVY 150 (555) T ss_pred HHHHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEE Confidence 7665543 22333332221 1112 233455688889999999999999999999997544443 3467 Q ss_pred EEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccce--------eeeee-ccceEEEEEEEeccCCc Q lcl|Aclame:pro 143 ISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWD--------KEGKK-LSGGFVTYSVIKIDGDK 212 (518) Q Consensus 143 i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~--------~~~~~-~~~~~I~n~ly~~~~~~ 212 (518) +..++...|+-.-+ +|++ ..+|-+ .+-.-++- . .+|.... ..... .....|.|.+|.-.... T Consensus 151 f~~~pl~~~~v~~d~~G~v-d~i~r~-~~~t~~ql----~--~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~ 222 (555) T protein:vir:10 151 HHSLTAGEYAIAADNQGRV-NTLYRE-FQITVAQM----V--REFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADRD 222 (555) T ss_pred EEEeecceeEEeeCCCCCE-EEEEEE-EeccHHHH----H--HhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCcC Confidence 77788888888644 3554 333322 11000000 0 0000000 00000 01133444454322111 Q ss_pred cccccccccccccccccccccCcccceee-cCC-CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 TTPISAERLPEQITSYLHTNDIQLNHSVS-IGL-KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR 290 (518) Q Consensus 213 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-tg~-~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~ 290 (518) .... ........++....+.+...+.. .|. ..|+++.-.+ ...++.||+|--..+.+-++.|+..--+... T Consensus 223 ~~~~--~~~~~p~~s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~-----~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~ 295 (555) T protein:vir:10 223 PSKR--DDRNMAWKSVYFEPGADETRTLRESGYRSFRALCPRWA-----LVGGDIYGNSPAMEALGDVRQLQHEQLRKAQ 295 (555) T ss_pred cCCC--CccccceEEEEEEeccCCccccccCCcccCCceeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHHHH Confidence 0000 00001111111111111111111 111 1233322222 2346778999999999999999884444444 Q ss_pred HHH-hccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 EGE-KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAV 369 (518) Q Consensus 291 e~~-~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~ 369 (518) -.. ..++...||++...... ...+...-|.. .+...+...-.+++......-.+.|+.+-+.|. T Consensus 296 ~~~~~~~pp~~v~~~~~~~~~---------~~~pgg~~~v~------~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~ 360 (555) T protein:vir:10 296 AIDYKSNPPLQLPVSAKNQDI---------STVPGGLSYVD------AAAPNGGIRTAFEVNLDLSHLLADIVDVRERIK 360 (555) T ss_pred HHHHHhcCceeeccccccccc---------eeccccccccc------cCCCCcceecccccccchHHHHHHHHHHHHHHH Confidence 443 35556666665421110 01111111111 111111111122332223334444555555554 Q ss_pred HHhCCCc--ccccc-CCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCC--cCCceeeE Q lcl|Aclame:pro 370 SKSGYNP--ATFNL-GNREVKATEIWSLQDATVRKIEKKKRLI-QNVYEQMLWDFLYLLTGGTNNKEKAI--MRDEIRVI 443 (518) Q Consensus 370 ~~~G~s~--~tf~~-d~~~~TAtEi~s~~~~t~~t~~~~~~~~-~~~l~~li~~il~l~~~~~~~~~~~~--~~~~~~v~ 443 (518) ... +.. ..+.. +...+|||||..+.+...+...-.-..+ .+.|.-++.-++.+...... .... .....+|+ T Consensus 361 ~af-~~dlf~~l~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~--lP~~P~~l~~~~i~ 437 (555) T protein:vir:10 361 ASF-YADLFLMLANGTNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANI--LPPPPQEMQGVDLN 437 (555) T ss_pred HHh-hcchhhhccCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCchhhcCceeE Confidence 333 111 11222 4455899999888877666666544443 45566666666666543211 1111 11123466 Q ss_pred EEeCCCCCCCHH-HHHH----HHHHHH-hCCC-------CCHHHHHHHH---cC---C--CCHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 444 IEFPDPMSVNLN-ELSS----TLNNMN-SALA-------MSVEEKVKLI---HP---K--WEDEEIQAEVKRIYLENAIG 502 (518) Q Consensus 444 v~f~D~i~~d~~-~~~~----~~~~~~-~aG~-------~S~~~~v~~~---~~---~--~~eeea~eev~rI~~E~~~~ 502 (518) |++--++..-.. ..+. .++.+. -+++ +-...+++.+ .+ . -++||+++..+. ++++++. T Consensus 438 v~yis~La~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~q-r~~~~q~ 516 (555) T protein:vir:10 438 VEFVSMLAQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQ-RADQQQA 516 (555) T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH-HHHHHHH Confidence 666544433211 1111 111100 0122 2234444333 11 0 133433321111 1111110 Q ss_pred CCC-----------------Cch----hccCcCCCCC Q lcl|Aclame:pro 503 EVP-----------------DPE----AIGGMETKGG 518 (518) Q Consensus 503 ~~~-----------------dp~----~~~~~~~~gG 518 (518) +.. +.. -.+-....|| T Consensus 517 ~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (555) T protein:vir:10 517 AQQAALLNQGADTAAKLGSVDTSKQNALTDVTRAFSG 553 (555) T ss_pred HHHHHHHHHHHHHHHHhcccccCcchhHHHHHhhhcc Confidence 000 000 0001112233 No 123 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=98.43 E-value=6.9e-07 Score=54.37 Aligned_cols=474 Identities=9% Similarity=-0.016 Sum_probs=189.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhh--hhhccCCCCccc-cceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLT--SLWAQGYVPTVH-DKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~~~~~-~~~~~~~l~~~i~~~~A 77 (518) |-=....+...|.| +.....+..+....++..+-...+ .|+......+.. ..++-=+.+...++.+| T Consensus 1 M~~~~~~~~l~~r~----------~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LA 70 (555) T protein:vir:10 1 MAEQTERKLLLSRW----------GQLRTERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLA 70 (555) T ss_pred CCCcccHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHH Confidence 33333333333333 122222222222222222222111 133322222222 23344455777777777 Q ss_pred HHHcCCc-----ceEEecccccc--chHH-------HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC-CeEE Q lcl|Aclame:pro 78 EYISGKP-----LSIDVTGVNGS--KDEN-------LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN-GRPS 142 (518) Q Consensus 78 ~ll~~e~-----~~i~v~~~~~~--~d~~-------~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i~ 142 (518) +-|.+-. +=+.+...+.. +... ....+...|..++|+..+.+++....+.|.+++-.--+. +.++ T Consensus 71 a~L~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~r 150 (555) T protein:vir:10 71 AGMMAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVY 150 (555) T ss_pred HHHHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEE Confidence 7665543 22333332221 1112 233455688889999999999999999999997544443 3467 Q ss_pred EEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccce--------eeeee-ccceEEEEEEEeccCCc Q lcl|Aclame:pro 143 ISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWD--------KEGKK-LSGGFVTYSVIKIDGDK 212 (518) Q Consensus 143 i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~--------~~~~~-~~~~~I~n~ly~~~~~~ 212 (518) +..++...|+-.-+ +|++ ..+|-+ .+-.-++- . .+|.... ..... .....|.|.+|.-.... T Consensus 151 f~~~pl~~~~v~~d~~G~v-d~i~r~-~~~t~~ql----~--~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~~ 222 (555) T protein:vir:10 151 HHSLTAGEYAIAADNQGRV-NTLYRE-FQITVAQM----V--REFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADRD 222 (555) T ss_pred EEEeecceeEEeeCCCCCE-EEEEEE-EeccHHHH----H--HhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCcC Confidence 77788888888644 3554 333322 11000000 0 0000000 00000 01133444454322111 Q ss_pred cccccccccccccccccccccCcccceee-cCC-CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 TTPISAERLPEQITSYLHTNDIQLNHSVS-IGL-KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR 290 (518) Q Consensus 213 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-tg~-~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~ 290 (518) .... ........++....+.+...+.. .|. ..|+++.-.+ ...++.||+|--..+.+-++.|+..--+... T Consensus 223 ~~~~--~~~~~p~~s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~-----~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~ 295 (555) T protein:vir:10 223 PSKR--DDRNMAWKSVYFEPGADETRTLRESGYRSFRALCPRWA-----LVGGDIYGNSPAMEALGDVRQLQHEQLRKAQ 295 (555) T ss_pred cCCC--CccccceEEEEEEeccCCccccccCCcccCCceeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHHHH Confidence 0000 00001111111111111111111 111 1233322222 2346778999999999999999884444444 Q ss_pred HHH-hccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 EGE-KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAV 369 (518) Q Consensus 291 e~~-~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~ 369 (518) -.. ..++...||++...... ...+...-|.. .+...+...-.+++......-.+.|+.+-+.|. T Consensus 296 ~~~~~~~pp~~v~~~~~~~~~---------~~~pgg~~~v~------~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~ 360 (555) T protein:vir:10 296 AIDYKSNPPLQLPVSAKNQDI---------STVPGGLSYVD------AAAPNGGIRTAFEVNLDLSHLLADIVDVRERIK 360 (555) T ss_pred HHHHHhcCceeeccccccccc---------eeccccccccc------cCCCCcceecccccccchHHHHHHHHHHHHHHH Confidence 443 35556666665421110 01111111111 111111111122332223334444555555554 Q ss_pred HHhCCCc--ccccc-CCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCC--cCCceeeE Q lcl|Aclame:pro 370 SKSGYNP--ATFNL-GNREVKATEIWSLQDATVRKIEKKKRLI-QNVYEQMLWDFLYLLTGGTNNKEKAI--MRDEIRVI 443 (518) Q Consensus 370 ~~~G~s~--~tf~~-d~~~~TAtEi~s~~~~t~~t~~~~~~~~-~~~l~~li~~il~l~~~~~~~~~~~~--~~~~~~v~ 443 (518) ... +.. ..+.. +...+|||||..+.+...+...-.-..+ .+.|.-++.-++.+...... .... .....+|+ T Consensus 361 ~af-~~dlf~~l~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~--lP~~P~~l~~~~i~ 437 (555) T protein:vir:10 361 ASF-YADLFLMLANGTNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANI--LPPPPQEMQGVDLN 437 (555) T ss_pred HHh-hcchhhhccCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCchhhcCceeE Confidence 333 111 11222 4455899999888877666666544443 45566666666666543211 1111 11123466 Q ss_pred EEeCCCCCCCHH-HHHH----HHHHHH-hCCC-------CCHHHHHHHH---cC---C--CCHHHHHHHHHHHHHhcccc Q lcl|Aclame:pro 444 IEFPDPMSVNLN-ELSS----TLNNMN-SALA-------MSVEEKVKLI---HP---K--WEDEEIQAEVKRIYLENAIG 502 (518) Q Consensus 444 v~f~D~i~~d~~-~~~~----~~~~~~-~aG~-------~S~~~~v~~~---~~---~--~~eeea~eev~rI~~E~~~~ 502 (518) |++--++..-.. ..+. .++.+. -+++ +-...+++.+ .+ . -++||+++..+. ++++++. T Consensus 438 v~yis~La~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~q-r~~~~q~ 516 (555) T protein:vir:10 438 VEFVSMLAQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQ-RADQQQA 516 (555) T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH-HHHHHHH Confidence 666544433211 1111 111100 0122 2234444333 11 0 133433321111 1111110 Q ss_pred CCC-----------------Cch----hccCcCCCCC Q lcl|Aclame:pro 503 EVP-----------------DPE----AIGGMETKGG 518 (518) Q Consensus 503 ~~~-----------------dp~----~~~~~~~~gG 518 (518) +.. +.. -.+-....|| T Consensus 517 ~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (555) T protein:vir:10 517 AQQAALLNQGADTAAKLGSVDTSKQNALTDVTRAFSG 553 (555) T ss_pred HHHHHHHHHHHHHHHHhcccccCcchhHHHHHhhhcc Confidence 000 000 0001112233 No 124 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=98.40 E-value=8.5e-07 Score=53.87 Aligned_cols=463 Identities=11% Similarity=0.000 Sum_probs=184.8 Q ss_pred HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCc-- Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKP-- 84 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~-- 84 (518) |+...|.=|.. +...+..+....++..+-...+.+.......+....++-=+.+...++.+|+-|++-. T Consensus 1 mk~~a~~r~~~---------l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dstg~~a~~~Laa~l~~~ltp 71 (542) T protein:vir:78 1 MKGLAQARYSA---------MRADREDFLDMARRCAALTLPYLLTEDGHASGGRLQQPYQSLGSKGVNALSSKLMLSLFP 71 (542) T ss_pred ChhHHHHHHHH---------HHHHhhHHHHHHHHHHHHhccccCCCCCCcccccccccccchHHHHHHHHHHHHHHhhcC Confidence 77766544422 2222222222222222222222211111111111122222346667777776665542 Q ss_pred ---ceEEeccccc-------cch----------HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEE Q lcl|Aclame:pro 85 ---LSIDVTGVNG-------SKD----------ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSIS 144 (518) Q Consensus 85 ---~~i~v~~~~~-------~~d----------~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~ 144 (518) +=+.+...+. .++ +.....+...+..++|+..+.+++....+.|.+++ |.+.+. +. T Consensus 72 p~~~WF~l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~~~~~--~~ 147 (542) T protein:vir:78 72 IQTSFFKLQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAESSDRVQLTAAMKHLIVTGNVLV--FAGKKT--LK 147 (542) T ss_pred CCCccccccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEE--EecCCC--ce Confidence 2233332210 011 11233556778899999999999999999999875 455543 44 Q ss_pred EEcCCeeEEEEE-cCcEEEEEEEEEEEe-cCceEEEEEEEEee---ccc--ceeeeeeccceEEEEEEEeccCCcccccc Q lcl|Aclame:pro 145 VHSSSQFWIDFK-NNEPFRFNFFEEIPT-SNKADIYYLVESRE---IKQ--WDKEGKKLSGGFVTYSVIKIDGDKTTPIS 217 (518) Q Consensus 145 ~v~ad~~~P~~~-~g~~~~~~f~~~~~~-~~~~~~y~~lE~he---~~~--~~~~~~~~~~~~I~n~ly~~~~~~~v~~~ 217 (518) .++-..|+-.-+ +|++.. +|.+.... ..-.. +|-+ ... .......+-.+.|.+..+.-++.+.. + T Consensus 148 ~~pl~~y~v~~d~~G~vd~-v~r~~~~t~~ql~~-----~fg~~~l~~~~~~~~~~~~~~~~~v~~~v~pr~~~~~~--~ 219 (542) T protein:vir:78 148 VYPLDRYVIERDGDGNVIE-IITRELVDRSLLPA-----EFQKQSLLEGKDSNAVGEDGPKFGVAQGKGGRNDAEVF--T 219 (542) T ss_pred EEecceeEEeeCCCCCeEE-EeeeeecCHHHHHH-----hhccccCchHHHhhccccCCCeEEEEEEeecccCCccc--c Confidence 455555444322 344433 33221110 00000 0000 000 00001111223444544443221110 0 Q ss_pred cccccccccc-ccccccCcccceee-cCCC-cceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-H Q lcl|Aclame:pro 218 AERLPEQITS-YLHTNDIQLNHSVS-IGLK-SMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREG-E 293 (518) Q Consensus 218 ~~~~~~~~~~-~~~~~~~~~~~~~~-tg~~-~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~-~ 293 (518) .........+ +.+..+...+.... .|.. .|+++.--+ ...++.||+|--..+.+-++.|+..--+...-. . T Consensus 220 ~~~~~~~~~s~~~e~~g~~v~~~~~e~g~~~~P~i~~Rw~-----~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~ 294 (542) T protein:vir:78 220 CCKLVDGQHRWHQECDGKEIKGSRSSSPLKHSPWLPLRFN-----VVDGESYGRGRVEEFFGDLSSLDALTRSLIEGSAA 294 (542) T ss_pred ccccCCCeEEEEEEeccccccccccccccccCCceeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHH Confidence 0000000000 00011111000011 1111 122222111 234678899999999999999988766655544 4 Q ss_pred hccceeeechhh-hccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 294 KTKTKIAASERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKS 372 (518) Q Consensus 294 ~g~~ri~v~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~ 372 (518) ..++...|+++- ++... ..+.....+.. +..+...+..+....+...-.+.|+.+-+.|.... T Consensus 295 a~~pp~lv~~~g~~~~~~---------~~~~~~g~iv~-------g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~aF 358 (542) T protein:vir:78 295 AAKVVFMVSPSATTKPQS---------LARAGTGAIIQ-------GRAEDVSVVQANKGADFRTVQEMIRDLSQRISDAF 358 (542) T ss_pred HhcCceeeccccccchhh---------cccCCCceeec-------CCccceeeeecccccchhHHHHHHHHHHHHHHHHh Confidence 566666775543 22210 01111112211 11111111112222223334444555544444333 Q ss_pred CCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCC Q lcl|Aclame:pro 373 GYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLI-QNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMS 451 (518) Q Consensus 373 G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~-~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~ 451 (518) -+. . -.|+..+|||||..+.+...+...-.-..+ .+.|.-+|.-++.+..... . .+..++.-+++++--++. T Consensus 359 l~~--~-~~d~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~L~Pli~R~~~il~r~g--~--lP~~p~~lv~~~~~s~La 431 (542) T protein:vir:78 359 LIL--N-VRQSERTTATEVREVQMELDRQLSGIYGSLTVELLTPYLNRKLHLMQRSK--Q--LPSLPKGLVMPTVVAGLG 431 (542) T ss_pred ccc--c-cCCcccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CCCCchhceeeeeechHH Confidence 111 1 124556899999888887766666555555 3445556666665543221 1 122333346666654442 Q ss_pred CC-----HHHHHHHHHHHHhC-C------CCCHHHHHHHH--cCCC-------CHHHHHHHHHHHHHhccccC------- Q lcl|Aclame:pro 452 VN-----LNELSSTLNNMNSA-L------AMSVEEKVKLI--HPKW-------EDEEIQAEVKRIYLENAIGE------- 503 (518) Q Consensus 452 ~d-----~~~~~~~~~~~~~a-G------~~S~~~~v~~~--~~~~-------~eeea~eev~rI~~E~~~~~------- 503 (518) .- .+...+.++.+-+. | .+....+++.+ .-+. ++|+++++.++.++.+.++. T Consensus 432 ~~~r~~~~~~l~~~~~~i~~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~~i~~s~e~~~~~~~q~q~~~~~~al~~~a~~ 511 (542) T protein:vir:78 432 GVGRGEDRAALIEFMQTVGQAMGPEALQQFIDPTEFLKRLAAASGIDTLNLVKSPETMANEAQQAQQQQMTASLMGQAGQ 511 (542) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHcCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhh Confidence 21 11111112221111 1 12333444333 0112 34555555555433332211 Q ss_pred -CCCchhc---cCcCCCCC Q lcl|Aclame:pro 504 -VPDPEAI---GGMETKGG 518 (518) Q Consensus 504 -~~dp~~~---~~~~~~gG 518 (518) ...|... ...+..|| T Consensus 512 ~a~~~~~~~~~~~~~a~~~ 530 (542) T protein:vir:78 512 LAKSPIGEKMMQQINAPGQ 530 (542) T ss_pred ccccccccchhhhcCCCCc Confidence 1111000 01112222 No 125 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=98.39 E-value=8.6e-07 Score=53.83 Aligned_cols=394 Identities=13% Similarity=0.059 Sum_probs=171.6 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhcc-CCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQ-GYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) ||+++.|.++. +...+.... ..+.. ..++|. ...+ ...+..+---.+++.+|+- T Consensus 1 MG~~~~~~~~~----~~~~~~~~~-~~~~~-----------------~~~~g~~~~~~---~~al~~~~V~~~v~~Ia~~ 55 (411) T protein:vir:81 1 MGWWSRLTRFF----RPRNETVDM-TNPLL-----------------LQWLGVDPDTP---RNQLSEATYFACLKILSES 55 (411) T ss_pred CchHHHHHhhc----cCccccccc-chHHH-----------------HHHhcCcccCh---hhhhccHHHHHHHHHHHHh Confidence 99887765544 322211100 00000 011111 1111 1112221122345555665 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEECCeEE-EEEEcCCeeEE Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINILNGRPS-ISVHSSSQFWI 153 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~-i~~v~ad~~~P 153 (518) +.+=|..+--...+... +.....+..+|.. | ....-++..+...+..|.+++.+..++|++. +-.++++.+-| T Consensus 56 iA~lp~~~~~~~~~~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~l~~l~~~~v~~ 134 (411) T protein:vir:81 56 LGKLPLKMYQKTERGIV-KSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYSGPQLQALWILPSQYVTI 134 (411) T ss_pred HhhCceeEEEecCCcee-eecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCceEEEEEECCceEEE Confidence 55444443211111100 1111122233321 1 1222333444455666888877777766653 55566666666 Q ss_pred EEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 154 ~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) ...+.... ..+..+++.. -...++..+. T Consensus 135 ~~~~~~~~----------~~~~~~~~~~------------------------~~~~~g~~~~------------------ 162 (411) T protein:vir:81 135 VVDDRGLL----------GEKNAIWYRY------------------------NDPYDGKMYV------------------ 162 (411) T ss_pred EEcCcccc----------cccceEEEEE------------------------EecCCceEEE------------------ Confidence 53221110 0000011100 0000000000 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNK 312 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~ 312 (518) +... -+.|++.. +. .+..+|+|...-+...+.....+-.-...-|+.|. +.-++ .....- T Consensus 163 ~~~~----------eiih~k~~--~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil-----~~~~~l 223 (411) T protein:vir:81 163 FRND----------EILHFKTS--VT--FDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVL-----EYTGDL 223 (411) T ss_pred Eccc----------cEEEEcCC--CC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE-----EeCCCC Confidence 0000 12344421 11 12346999998888877776655554555556654 33222 111110 Q ss_pred CccccccCCCcchhheeeecCCcC-----CCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c Q lcl|Aclame:pro 313 STDKEEWSMNVDEDYFMQFKGTLD-----AGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V 386 (518) Q Consensus 313 ~~~~~~~~~d~d~~~~~~~~~~~~-----~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~ 386 (518) .... ...-.+.+.......+ .-.+++..++.++....+.++.+..+...+.|....|++|..+|..++. . T Consensus 224 ~~e~----~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~ 299 (411) T protein:vir:81 224 NQEA----RDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSY 299 (411) T ss_pred CHHH----HHHHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc Confidence 0000 0000111111100000 0011223466666667788889988888999999999999999875433 2 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) +..|- . ....++.+|..++..+.......... .......+.+.++++..+..|.+++++.+.+++. T Consensus 300 ~n~e~--~----------~~~f~~~~l~P~~~~ie~~l~~~ll~--~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~ 365 (411) T protein:vir:81 300 ASAEA--Q----------NLAFYVDTLLYVLKQYEEEITYKILS--NDLISQGHYFKFNVNVILRADIKTQMDSLSTAVQ 365 (411) T ss_pred hhHHH--H----------HHHHHHHHHHHHHHHHHHHHHhhcCC--hhhcCCCcEEEeechhhhccCHHHHHHHHHHHHh Confidence 22121 1 11223334444444433322211110 0111223457788888888999999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+|+.-++.+++. +.. +..++-+. .-+ ..+- ...+.-..+|| T Consensus 366 ~g~~t~NE~R~~~g--l~p~~ggD~~~~---~~n---~~pl-~~~~~~~~kgG 409 (411) T protein:vir:81 366 NGIMTPNEARDYLD--MPADDYGNNLMA---NGN---YIPL-SMLGANYGKGG 409 (411) T ss_pred CCCcCHHHHHHHhC--CCCCCCCCeeee---ccC---ccch-hhhhhhhccCC Confidence 99999999876652 322 11111110 000 0000 11122234667 No 126 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=98.36 E-value=1e-06 Score=53.37 Aligned_cols=470 Identities=13% Similarity=0.046 Sum_probs=178.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhh-------------HHhhHHHHhhccchhhhh----h----hhhhh--hhhhccCCCC Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSE-------------PELIPKYLPLVPDNQKEW----S----KDSYL--TSLWAQGYVP 57 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e-------------~~~~~~~~~~~~~~~~~~----~----~~~~~--~~~w~~~~~~ 57 (518) |-|-|+. +.|- .+++-.++ +.....+++.+....++. . ..+|. +.+-...... T Consensus 1 ~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~R~~~e~~W~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (641) T protein:vir:94 1 MTIEMPT-PIIE---DKESAKRKLSTDRIGGVVISKWQESRDKRNTVENNWDETYELYRASAIDRQNTRARNFQTTGADD 76 (641) T ss_pred CccCCCc-cccc---CCcchhhcCCchhHHHHHHHHHHHHHHhhcchHHHHHHHHHHhhcchhhhhhcccccccccccch Confidence 4444431 1110 11100000 000001111111110000 0 00110 0000001111 Q ss_pred ccccceecCchHHHHHHHHHHHHcCC----cceEEeccccccchHH---HHHHHHHHHhhcChHHHHHHHHHHHHhhCCE Q lcl|Aclame:pro 58 TVHDKLMNSGTGNEIVVVAAEYISGK----PLSIDVTGVNGSKDEN---LTKQLKEALRIDNFDSKSVKIVELAGGSGVS 130 (518) Q Consensus 58 ~~~~~~~~~~l~~~i~~~~A~ll~~e----~~~i~v~~~~~~~d~~---~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~ 130 (518) ...++++..+-+...++.+++-|++- ..-+++.+.+..+++. ++++++..+..++|...+...+..++..|.+ T Consensus 77 ~~~r~ki~~~~~~~~~~~l~s~Lm~~~~p~~~wf~~~p~~~ed~~~A~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~g~~ 156 (641) T protein:vir:94 77 ADWRHRINTGHTFEVVETLVAYFKGATFPSDDWFDLKGMVPELADAARVVKQLTKTKLEAASIRDIFETYVRNLVLYGVS 156 (641) T ss_pred hcccccccchhHHHHHHHHhhHHhhhhcCCCceEEEecCCCChHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhcCce Confidence 12245677777777777776655443 3335655444334332 4567777888999999999999999999999 Q ss_pred EEEEEEEC-----------------------------CeEEEEEEcCCeeEEEEEcCcEEEEEEEEEE-EecC----ceE Q lcl|Aclame:pro 131 AVKINILN-----------------------------GRPSISVHSSSQFWIDFKNNEPFRFNFFEEI-PTSN----KAD 176 (518) Q Consensus 131 ~~k~~~d~-----------------------------~~i~i~~v~ad~~~P~~~~g~~~~~~f~~~~-~~~~----~~~ 176 (518) ++|++|+. ..+++..+++..+++. ..++..+.+|+..- ...+ .+. T Consensus 157 iv~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~v~~~di~~d-ps~~~~~~~f~~~r~t~~t~~~l~~e 235 (641) T protein:vir:94 157 TYRLGWDTSMERQFKRTFVETGDIFGGWEDVAVNRQRSELRIEPLSPYDVWLD-TSGGKNTGTFVRLRHTREELHELVTS 235 (641) T ss_pred EEEeehhhHHHHhhhhhcccchhhcccccccceecccceeeEEecchhheeec-CCCCcccccceehhhhHHHHHHHHhc Confidence 99998751 1234444444444432 12222233332110 0000 000 Q ss_pred EEEEE----EEeecc----cceeeeeeccceEEEEEEEeccCCccccccccccccccc-cccccccCcccceee-cC--- Q lcl|Aclame:pro 177 IYYLV----ESREIK----QWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQIT-SYLHTNDIQLNHSVS-IG--- 243 (518) Q Consensus 177 ~y~~l----E~he~~----~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~-tg--- 243 (518) -|+-+ +.|..+ .........+...-.+++|.-.++ . ......+. .+..+.+ .+.+. .+ T Consensus 236 g~~~~d~v~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~e~~gd--~----~~d~~~~~~~~~~~~g---~~il~~~~~~~ 306 (641) T protein:vir:94 236 GYYDLDLTQVEQYVDYKFADPDTPKDVNGTDTSGWDIIEYYGP--L----LVEGVQFWCVHAVFYG---KQLIRLSDSKY 306 (641) T ss_pred CCCChhhcchhhcccccccccccccccccccccccceeeeeee--e----ccCCCceeeEEEEEeC---CEEeecccccc Confidence 00000 000000 000000000000000000000000 0 00000000 0001111 11110 11 Q ss_pred -CCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-ccceeeechh-hhccCCCCCccccccC Q lcl|Aclame:pro 244 -LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAASER-MFRKKVNKSTDKEEWS 320 (518) Q Consensus 244 -~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~-g~~ri~v~~~-~l~~~~~~~~~~~~~~ 320 (518) ...||+++-..+ ..++.+|.|....+.+.++.||...-+...-... ..++..++.+ .++... +. T Consensus 307 ~d~~Pf~~~r~~~-----~~~~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~~~~~~~~~~~--------l~ 373 (641) T protein:vir:94 307 WCGSPFVTTTLLP-----DRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTLVEDGILKRED--------VK 373 (641) T ss_pred cCcCCeEEeccee-----cCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeeccccccccce--------ee Confidence 123444432222 2367889999999999999999988888876654 3444444333 222210 00 Q ss_pred CCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCC--cccccc-CCccchHHHHHHHHHH Q lcl|Aclame:pro 321 MNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYN--PATFNL-GNREVKATEIWSLQDA 397 (518) Q Consensus 321 ~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s--~~tf~~-d~~~~TAtEi~s~~~~ 397 (518) ..+...++.. ..+.-.++..-++++.+. ...++.+-..+....+.+ .+.+.. ++...|||||....+. T Consensus 374 ~~PG~ii~~~-------~~~~v~pl~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV~~~~~e 444 (641) T protein:vir:94 374 AKPGAVFKVA-------QHGSLQPIDMGRQDFVVT--YQEAQVQESSVYRNTSTGPLIGNAAPRGGERVTAAEIQGVRDA 444 (641) T ss_pred ccCCcceeeC-------CCCcceeecCCccccchh--HHHHHHHHHHHHHhhhhhhhhcccccccchhccHHHHHHHHHH Confidence 1111111111 011111222222233332 222333322333333322 112222 3345799999888777 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccc------------cCCCcCCceeeEEEeCCCCCCCHH---HHHHHH Q lcl|Aclame:pro 398 TVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNK------------EKAIMRDEIRVIIEFPDPMSVNLN---ELSSTL 461 (518) Q Consensus 398 t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~------------~~~~~~~~~~v~v~f~D~i~~d~~---~~~~~~ 461 (518) .-.....+.+.+. ..|..+++.++++........ .+..++...+++.+|+= ++.... +.++.+ T Consensus 445 ~~~~l~~i~r~l~~e~l~pll~~~~~~~~~~~~~p~i~R~~~~~~~~~~~~~~~p~~L~~~~~i-v~l~~~q~~~~~~~i 523 (641) T protein:vir:94 445 GGNRLSSVHTHIEDSSTLPLLNKVFSLLQQFYVTPETIRMYVPEEQMDGFFEVSPEYLHYPYKF-LALGANYVVERERMV 523 (641) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhchhhhcccCCCCCccceeeeeeE-eecchhHHHHHHHHH Confidence 7777777777776 477778888877765432110 12223333455555542 233322 222222 Q ss_pred HHHH---hCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCch-----------------------hccCcCC Q lcl|Aclame:pro 462 NNMN---SALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPE-----------------------AIGGMET 515 (518) Q Consensus 462 ~~~~---~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~-----------------------~~~~~~~ 515 (518) +.+. +....-+ .... + .+-+.+.+++.+. .+. ++|. .....+. T Consensus 524 ~~l~~~~~~~a~~P-~v~d--~--~d~~~~~~~~~~~---~g~---~~p~~~ir~~~~~~~~~~~~~~~~q~~~~~~a~~ 592 (641) T protein:vir:94 524 TDLLQLLDISGRVP-QIGQ--S--LDYALILEDLLRQ---MRF---TDPMRYIKKAEAPPAAPPIAPAEPGALPPEMMNS 592 (641) T ss_pred HHHHHHHHHhhcCh-hhhh--c--CCHHHHHHHHHHH---hCC---CCchhhccCccCchhHHHHHHHHHHHHHHHHHHH Confidence 2221 1111101 0011 0 1111111111110 000 0010 0001112 Q ss_pred CCC Q lcl|Aclame:pro 516 KGG 518 (518) Q Consensus 516 ~gG 518 (518) -|| T Consensus 593 ~~~ 595 (641) T protein:vir:94 593 VGG 595 (641) T ss_pred HHh Confidence 222 No 127 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=98.35 E-value=1.1e-06 Score=53.16 Aligned_cols=413 Identities=11% Similarity=-0.036 Sum_probs=169.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccc-eecCchHH--HHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDK-LMNSGTGN--EIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~l~~--~i~~~~A 77 (518) ||+|+.|..+.+..-....+. +.|......-..|+....-+..-. ...+..+. .+++.+| T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia 63 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEA-----------------RAWEPYDPSIYNLGAVAASGETVTPHDALQVSAVFASVRLLS 63 (457) T ss_pred Cchhhhhhccccccccccccc-----------------ccccccchHHHhhcccccCCceechHHhhccHHHHHHHHHHH Confidence 999988766543332111110 111100001111221111111000 01122222 2455555 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhh-c---ChHHHHHHHHHHHHhhCCEEEEEEEECCeE-EEEEEcCCeeE Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI-D---NFDSKSVKIVELAGGSGVSAVKINILNGRP-SISVHSSSQFW 152 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d-n---~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i-~i~~v~ad~~~ 152 (518) +-|.+=|..+--... ....+.....+...+.. + .....++..+...+..|.+++.+..++|++ .+..++|+.+- T Consensus 64 ~~iA~lp~~~~~~~~-~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~~g~~~~l~~l~p~~v~ 142 (457) T protein:vir:13 64 ETIATLPLSTYSKRG-GSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQGPNIVGLDVLDPTKIH 142 (457) T ss_pred HhhccCceEEEEecC-CcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEccCceE Confidence 555444444322111 11111222233333332 1 122344455556677788888877666664 45555666555 Q ss_pred EEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccc Q lcl|Aclame:pro 153 IDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTN 232 (518) Q Consensus 153 P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~ 232 (518) +..... .+.+..+|+.. . |...+ ..+... . T Consensus 143 v~~~~~------------~~~~~~~~~~y------------------~-----~~~~~-~~~~~~---------~----- 172 (457) T protein:vir:13 143 VHMVMV------------DGLRRKVFEAY------------------D-----IDADG-NEVLLG---------W----- 172 (457) T ss_pred EEEecC------------CCccceeEEEE------------------E-----EecCC-ceeeEE---------e----- Confidence 532110 01111111100 0 00000 000000 0 Q ss_pred cCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhccCCC Q lcl|Aclame:pro 233 DIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRKKVN 311 (518) Q Consensus 233 ~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~~~~ 311 (518) ..+. -+.|++....+. ..+|+|.+.-+...|.-...+-.-...-|+.|.. ..++ ..... T Consensus 173 -~~~~----------diih~~~~~~~~----~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil-----~~~~~ 232 (457) T protein:vir:13 173 -FTPR----------DVLHIPGMMLPG----DFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVV-----EVPGT 232 (457) T ss_pred -eCcc----------ceEEecCCCCCC----ccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEE-----EcCCC Confidence 0000 123444432221 2359999988877776554443333344555443 3222 11110 Q ss_pred CCccccccCCCcchhheeeecCCcC-----CCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc- Q lcl|Aclame:pro 312 KSTDKEEWSMNVDEDYFMQFKGTLD-----AGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE- 385 (518) Q Consensus 312 ~~~~~~~~~~d~d~~~~~~~~~~~~-----~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~- 385 (518) -.... ...-.+.+.......+ .--+.+..++.++.+..+.++.+..+...+.|....|++|..++..+++ T Consensus 233 ls~e~----~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~ 308 (457) T protein:vir:13 233 MSEEG----LARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNST 308 (457) T ss_pred CCHHH----HHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcc Confidence 00000 0000011111100000 0011223467777777888899999899999999999999999864332 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) .+++-+...... .++.+|..++..+......... .......+.+.+++++....|.+++++.+.+++ T Consensus 309 ~~~sn~eq~~~~----------f~~~tl~P~~~~ie~~ln~~L~---~~~~~~~~~i~fd~~~l~~~D~~~r~~~~~~~~ 375 (457) T protein:vir:13 309 SWGSGLAEQNIA----------FTMFSLRPWLERIEAGFNRLLF---AETADRFRFVKFNLDEIKRGAPKERMELWSLGL 375 (457) T ss_pred cccchHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhc---CccccCceeEEeechhhhccCHHHHHHHHHHHH Confidence 222222111211 1122222222222221111111 111112245777888888899999999999999 Q ss_pred hCCCCCHHHHHHHHcCC-CCHHHHHHHHH-----HH----HHhcccc--CCC--------CchhccCcCCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIHPK-WEDEEIQAEVK-----RI----YLENAIG--EVP--------DPEAIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~~~-~~eeea~eev~-----rI----~~E~~~~--~~~--------dp~~~~~~~~~gG 518 (518) ++|+|+.-++.+.+... ..+-.+++-.. .+ +.+.+.. .+. ++...|.-+..++ T Consensus 376 ~~G~~T~NE~R~~~gl~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~ 448 (457) T protein:vir:13 376 QNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGA 448 (457) T ss_pred hCCCcCHHHHHHHhCCCCCCCCcccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccccC Confidence 99999999977665211 22211111110 00 0010000 000 0111111111111 No 128 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=98.33 E-value=1.3e-06 Score=52.90 Aligned_cols=409 Identities=11% Similarity=0.046 Sum_probs=169.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i~~~~A 77 (518) ||++ +.|+.|+....- .. ++ ....... ...... |......+. ....+..+---.+++.+| T Consensus 1 M~~~----~r~~~~~~~~~r-~~----~~-~~~~~~~-----~~~~~~--~~g~~~~~~~v~~~~al~~~~v~~~i~~ia 63 (432) T protein:vir:10 1 MKIV----DSVKKFFNFEKR-QT----SQ-VIELNKD-----DEKLLE--WLGISPSTISVKGKNALKVATVFACIKILS 63 (432) T ss_pred CChH----HHHHHhcCcccc-Cc----cc-ccccCCc-----hHHHHH--HhCCCcCccccchhhhhccHHHHHHHHHHH Confidence 5554 556666532210 00 00 0000000 000111 221121111 111222222223455666 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEEC-CeE-EEEEEcCCe Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINILN-GRP-SISVHSSSQ 150 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i-~i~~v~ad~ 150 (518) +-|.+-|..+--...+.. .+.....+..+|.. | .....++..+...+..|.+++.+..+. |++ .+..++|+. T Consensus 64 ~~ia~lp~~~~~~~~~~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~ 142 (432) T protein:vir:10 64 ESVSKLPLKIYQEDEYGI-QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASK 142 (432) T ss_pred HhhccCceEEEEecCCce-eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCce Confidence 666554544422221111 11111223333321 1 122334445556667788888877653 443 455666666 Q ss_pred eEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 151 ~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) +-+.-.+ +... .+..+|+ .+... +.... + T Consensus 143 v~v~~d~~~~~~-----------~~~~~~y-------------------------~~~~~-g~~~~---------~---- 172 (432) T protein:vir:10 143 VTVYIDDVGLLN-----------SKTKMWY-------------------------VVNTG-GQQRV---------L---- 172 (432) T ss_pred eEEEEcCccccc-----------ccceEEE-------------------------EEecC-CeEEE---------E---- Confidence 6553211 1100 0000111 01100 00000 0 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhcc Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRK 308 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~ 308 (518) ++. -+.|+++..+ .+...|+|.+..+...+.....+-.....-|+.|. ++-++ .. T Consensus 173 -----~~~----------eiih~r~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil-----~~ 228 (432) T protein:vir:10 173 -----KPE----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLV-----QY 228 (432) T ss_pred -----ccc----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----Ec Confidence 000 1344443211 12245999999888888777665555555566653 33222 11 Q ss_pred CCCCCccccccCCCcchhheeeecCC-cCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c Q lcl|Aclame:pro 309 KVNKSTDKEEWSMNVDEDYFMQFKGT-LDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V 386 (518) Q Consensus 309 ~~~~~~~~~~~~~d~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~ 386 (518) ...-........-..-...|.+.... --.--+++..++.++....+.++.+..+...+.|....|++|..++..+++ . T Consensus 229 ~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~ 308 (432) T protein:vir:10 229 VGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATL 308 (432) T ss_pred CCCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc Confidence 11100000000000000111111000 000011223466777777788899999999999999999999999864332 2 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) +..| ... . ..++.+|..++..+-......... .......+.+.+++++-+..|..++++.+.+++. T Consensus 309 s~~e--~~~-~---------~~~~~~l~P~~~~ie~~ln~kLl~--~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~ 374 (432) T protein:vir:10 309 NNIE--QQQ-Q---------QFYTDTLQATLTMYEQEMTYKLFL--DSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQ 374 (432) T ss_pred ccHH--HHH-H---------HHHHHHHHHHHHHHHHHHHHhhcC--hhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHh Confidence 2111 111 1 112333333333332222111000 0111122457777778888999999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCH-HHHHHH-----HHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWED-EEIQAE-----VKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~e-eea~ee-----v~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+|+..++.+++. +.. +..++- ...+.. .....+...+..+.-+.+|+ T Consensus 375 ~G~~t~NE~R~~~g--~~pi~ggD~~~~~~n~~~~~~-~~~~~~k~~~~~~~~~~~~~ 429 (432) T protein:vir:10 375 GGFLKPNEARSKED--LPPEAGGDRLLVNGNMLPIDM-AGQAYLKGGDTNGEVSKEGN 429 (432) T ss_pred CCCcCHHHHHHHhC--CCCCCCCCeEeecccccchhh-ccccccCCCCCCCCCCCCCC Confidence 99999999877663 221 111100 000100 00000000011111111111 No 129 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=98.33 E-value=1.3e-06 Score=52.90 Aligned_cols=409 Identities=11% Similarity=0.046 Sum_probs=169.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i~~~~A 77 (518) ||++ +.|+.|+....- .. ++ ....... ...... |......+. ....+..+---.+++.+| T Consensus 1 M~~~----~r~~~~~~~~~r-~~----~~-~~~~~~~-----~~~~~~--~~g~~~~~~~v~~~~al~~~~v~~~i~~ia 63 (432) T protein:vir:10 1 MKIV----DSVKKFFNFEKR-QT----SQ-VIELNKD-----DEKLLE--WLGISPSTISVKGKNALKVATVFACIKILS 63 (432) T ss_pred CChH----HHHHHhcCcccc-Cc----cc-ccccCCc-----hHHHHH--HhCCCcCccccchhhhhccHHHHHHHHHHH Confidence 5554 556666532210 00 00 0000000 000111 221121111 111222222223455666 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEEC-CeE-EEEEEcCCe Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINILN-GRP-SISVHSSSQ 150 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i-~i~~v~ad~ 150 (518) +-|.+-|..+--...+.. .+.....+..+|.. | .....++..+...+..|.+++.+..+. |++ .+..++|+. T Consensus 64 ~~ia~lp~~~~~~~~~~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~ 142 (432) T protein:vir:10 64 ESVSKLPLKIYQEDEYGI-QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASK 142 (432) T ss_pred HhhccCceEEEEecCCce-eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCce Confidence 666554544422221111 11111223333321 1 122334445556667788888877653 443 455666666 Q ss_pred eEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 151 ~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) +-+.-.+ +... .+..+|+ .+... +.... + T Consensus 143 v~v~~d~~~~~~-----------~~~~~~y-------------------------~~~~~-g~~~~---------~---- 172 (432) T protein:vir:10 143 VTVYIDDVGLLN-----------SKTKMWY-------------------------VVNTG-GQQRV---------L---- 172 (432) T ss_pred eEEEEcCccccc-----------ccceEEE-------------------------EEecC-CeEEE---------E---- Confidence 6553211 1100 0000111 01100 00000 0 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhcc Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRK 308 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~ 308 (518) ++. -+.|+++..+ .+...|+|.+..+...+.....+-.....-|+.|. ++-++ .. T Consensus 173 -----~~~----------eiih~r~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil-----~~ 228 (432) T protein:vir:10 173 -----KPE----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLV-----QY 228 (432) T ss_pred -----ccc----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----Ec Confidence 000 1344443211 12245999999888888777665555555566653 33222 11 Q ss_pred CCCCCccccccCCCcchhheeeecCC-cCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c Q lcl|Aclame:pro 309 KVNKSTDKEEWSMNVDEDYFMQFKGT-LDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V 386 (518) Q Consensus 309 ~~~~~~~~~~~~~d~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~ 386 (518) ...-........-..-...|.+.... --.--+++..++.++....+.++.+..+...+.|....|++|..++..+++ . T Consensus 229 ~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~ 308 (432) T protein:vir:10 229 VGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATL 308 (432) T ss_pred CCCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc Confidence 11100000000000000111111000 000011223466777777788899999999999999999999999864332 2 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) +..| ... . ..++.+|..++..+-......... .......+.+.+++++-+..|..++++.+.+++. T Consensus 309 s~~e--~~~-~---------~~~~~~l~P~~~~ie~~ln~kLl~--~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~ 374 (432) T protein:vir:10 309 NNIE--QQQ-Q---------QFYTDTLQATLTMYEQEMTYKLFL--DSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQ 374 (432) T ss_pred ccHH--HHH-H---------HHHHHHHHHHHHHHHHHHHHhhcC--hhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHh Confidence 2111 111 1 112333333333332222111000 0111122457777778888999999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCH-HHHHHH-----HHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWED-EEIQAE-----VKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~e-eea~ee-----v~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+|+..++.+++. +.. +..++- ...+.. .....+...+..+.-+.+|+ T Consensus 375 ~G~~t~NE~R~~~g--~~pi~ggD~~~~~~n~~~~~~-~~~~~~k~~~~~~~~~~~~~ 429 (432) T protein:vir:10 375 GGFLKPNEARSKED--LPPEAGGDRLLVNGNMLPIDM-AGQAYLKGGDTNGEVSKEGN 429 (432) T ss_pred CCCcCHHHHHHHhC--CCCCCCCCeEeecccccchhh-ccccccCCCCCCCCCCCCCC Confidence 99999999877663 221 111100 000100 00000000011111111111 No 130 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=98.33 E-value=1.3e-06 Score=52.90 Aligned_cols=409 Identities=11% Similarity=0.046 Sum_probs=169.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i~~~~A 77 (518) ||++ +.|+.|+....- .. ++ ....... ...... |......+. ....+..+---.+++.+| T Consensus 1 M~~~----~r~~~~~~~~~r-~~----~~-~~~~~~~-----~~~~~~--~~g~~~~~~~v~~~~al~~~~v~~~i~~ia 63 (432) T protein:vir:10 1 MKIV----DSVKKFFNFEKR-QT----SQ-VIELNKD-----DEKLLE--WLGISPSTISVKGKNALKVATVFACIKILS 63 (432) T ss_pred CChH----HHHHHhcCcccc-Cc----cc-ccccCCc-----hHHHHH--HhCCCcCccccchhhhhccHHHHHHHHHHH Confidence 5554 556666532210 00 00 0000000 000111 221121111 111222222223455666 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEEC-CeE-EEEEEcCCe Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINILN-GRP-SISVHSSSQ 150 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i-~i~~v~ad~ 150 (518) +-|.+-|..+--...+.. .+.....+..+|.. | .....++..+...+..|.+++.+..+. |++ .+..++|+. T Consensus 64 ~~ia~lp~~~~~~~~~~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~ 142 (432) T protein:vir:10 64 ESVSKLPLKIYQEDEYGI-QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASK 142 (432) T ss_pred HhhccCceEEEEecCCce-eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCce Confidence 666554544422221111 11111223333321 1 122334445556667788888877653 443 455666666 Q ss_pred eEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 151 ~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) +-+.-.+ +... .+..+|+ .+... +.... + T Consensus 143 v~v~~d~~~~~~-----------~~~~~~y-------------------------~~~~~-g~~~~---------~---- 172 (432) T protein:vir:10 143 VTVYIDDVGLLN-----------SKTKMWY-------------------------VVNTG-GQQRV---------L---- 172 (432) T ss_pred eEEEEcCccccc-----------ccceEEE-------------------------EEecC-CeEEE---------E---- Confidence 6553211 1100 0000111 01100 00000 0 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhcc Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRK 308 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~ 308 (518) ++. -+.|+++..+ .+...|+|.+..+...+.....+-.....-|+.|. ++-++ .. T Consensus 173 -----~~~----------eiih~r~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil-----~~ 228 (432) T protein:vir:10 173 -----KPE----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLV-----QY 228 (432) T ss_pred -----ccc----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----Ec Confidence 000 1344443211 12245999999888888777665555555566653 33222 11 Q ss_pred CCCCCccccccCCCcchhheeeecCC-cCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c Q lcl|Aclame:pro 309 KVNKSTDKEEWSMNVDEDYFMQFKGT-LDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V 386 (518) Q Consensus 309 ~~~~~~~~~~~~~d~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~ 386 (518) ...-........-..-...|.+.... --.--+++..++.++....+.++.+..+...+.|....|++|..++..+++ . T Consensus 229 ~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~ 308 (432) T protein:vir:10 229 VGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATL 308 (432) T ss_pred CCCCCHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc Confidence 11100000000000000111111000 000011223466777777788899999999999999999999999864332 2 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) +..| ... . ..++.+|..++..+-......... .......+.+.+++++-+..|..++++.+.+++. T Consensus 309 s~~e--~~~-~---------~~~~~~l~P~~~~ie~~ln~kLl~--~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~ 374 (432) T protein:vir:10 309 NNIE--QQQ-Q---------QFYTDTLQATLTMYEQEMTYKLFL--DSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQ 374 (432) T ss_pred ccHH--HHH-H---------HHHHHHHHHHHHHHHHHHHHhhcC--hhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHh Confidence 2111 111 1 112333333333332222111000 0111122457777778888999999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCH-HHHHHH-----HHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWED-EEIQAE-----VKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~e-eea~ee-----v~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+|+..++.+++. +.. +..++- ...+.. .....+...+..+.-+.+|+ T Consensus 375 ~G~~t~NE~R~~~g--~~pi~ggD~~~~~~n~~~~~~-~~~~~~k~~~~~~~~~~~~~ 429 (432) T protein:vir:10 375 GGFLKPNEARSKED--LPPEAGGDRLLVNGNMLPIDM-AGQAYLKGGDTNGEVSKEGN 429 (432) T ss_pred CCCcCHHHHHHHhC--CCCCCCCCeEeecccccchhh-ccccccCCCCCCCCCCCCCC Confidence 99999999877663 221 111100 000100 00000000011111111111 No 131 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=98.33 E-value=1.3e-06 Score=52.87 Aligned_cols=476 Identities=12% Similarity=0.006 Sum_probs=185.6 Q ss_pred HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhh--hhhccCCC---Ccccc-ceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLT--SLWAQGYV---PTVHD-KLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~w~~~~~---~~~~~-~~~~~~l~~~i~~~~A~ll 80 (518) |++--+.=++ +.. ..++.....+..+....++..+-...+ .|-+.+.. ++.++ .++-=+.+...++.+|+-| T Consensus 1 m~~d~~~~~~-~l~-~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAs~l 78 (549) T protein:vir:10 1 MTNDDAKILQ-ALN-ADHGRMKEKRQSYEAVWNDVIDYLMPRLDKFGQLPRPDSEKGRERSQKMFDSTAPLALRNFVAAM 78 (549) T ss_pred CCcchHHHHH-HHH-HHHHHHHHHhhhHHHHHHHHHHHhccccccccccCCCCCCcccccccccccchHHHHHHHHHHHH Confidence 2211100000 000 001112222222222222222221111 01111111 11111 1222234667777777766 Q ss_pred cCCc-----ceEEeccccccchH--HHHHHHH-------HHH--hhcChHHHHHHHHHHHHhhCCEEEEEEEECC-eEEE Q lcl|Aclame:pro 81 SGKP-----LSIDVTGVNGSKDE--NLTKQLK-------EAL--RIDNFDSKSVKIVELAGGSGVSAVKINILNG-RPSI 143 (518) Q Consensus 81 ~~e~-----~~i~v~~~~~~~d~--~~~~~l~-------~vl--~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~-~i~i 143 (518) ++-. +=+.+...+...++ ...+.|+ .++ ..++|+..+.++.....+.|.+++..--+.+ .+++ T Consensus 79 ~~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~l~~~~~~~~~~~f 158 (549) T protein:vir:10 79 DSMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGALMIEHDVGKGIVY 158 (549) T ss_pred HhhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhcceeeEEeecCCCeeEE Confidence 6543 22333333322111 1222332 322 3578999999999999999999988766644 4578 Q ss_pred EEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEee--ccc---ceeeeeeccceEEEEEEEeccCCcccccc Q lcl|Aclame:pro 144 SVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESRE--IKQ---WDKEGKKLSGGFVTYSVIKIDGDKTTPIS 217 (518) Q Consensus 144 ~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he--~~~---~~~~~~~~~~~~I~n~ly~~~~~~~v~~~ 217 (518) ..++-..|+-.-+ +|++.. +|-+ .+..-++.+ -+|-. ... .......+..+.|.|.+|...+...... T Consensus 159 ~~~pl~~~~v~~d~~G~vd~-i~r~-~~~t~~ql~---~~fg~~~l~~~v~~~~~~~~~~~~~v~~~V~pr~~~~~~~~- 232 (549) T protein:vir:10 159 RNVPMQRLWFAENNSGLIDK-THVQ-WELTLRQAA---QRFGRENLSPSMQSTLEKDPEKSAIFYHAVEPRADRDPRKL- 232 (549) T ss_pred EEEEcCeEEEeeCCCCCeEE-EEEE-eecCHHHHH---HhcCcccCCHHHHHHhhcCCCceEEEEEEeecCCCCCcccc- Confidence 8888888887644 355533 4322 110000000 00000 000 0000011223445555554322111000 Q ss_pred ccccccccccccccccCcccceee-cCCC-cceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-h Q lcl|Aclame:pro 218 AERLPEQITSYLHTNDIQLNHSVS-IGLK-SMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-K 294 (518) Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~-tg~~-~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~ 294 (518) .........+....+ ...++. .|.. .|+++.- -+ ...++.||+|--..+.+-++.|+..--....-.. . T Consensus 233 -~~~~~pf~sv~~e~~--~~~il~esg~~e~P~~~~R----w~-~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~ 304 (549) T protein:vir:10 233 -DGRNMQFASYWLDEG--RDRIVQNSGFRTFPFAIGR----FY-VGTDDVYGGSPAYDAMPDVRMANDMAKTNIRGAQKL 304 (549) T ss_pred -ccccCceEEEEEEec--CCEeeccCCcccCCcceee----ee-ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 000011111111111 111221 2211 1222211 12 2336778999999999999999887666665553 4 Q ss_pred ccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 295 TKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGY 374 (518) Q Consensus 295 g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~ 374 (518) .++...||.+..-...+- .+.. ..+.. .+.++...+..+...-+.......++.+-+.|.... + T Consensus 305 ~~p~~~v~~~g~~~~~~l--------~pgg-~~~~~------~~~~~~~~~~pl~~~~~~~~~~~~i~~~~~rI~~af-~ 368 (549) T protein:vir:10 305 VDPPLLANEDGVLDGFDL--------RSGA-LNWGG------LNDKGEEMVKPLLTGKQAQIGIEFAQDTRQTINQWF-Y 368 (549) T ss_pred hcCceeecccccccccee--------ccCC-ccccc------cCCCCccceeeeccccchhHHHHHHHHHHHHHHHHH-h Confidence 667777776542111110 0000 11110 011111223222222222223344444444443332 1 Q ss_pred Cccccc--cCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCcC----CceeeEEEeC Q lcl|Aclame:pro 375 NPATFN--LGNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEKAIMR----DEIRVIIEFP 447 (518) Q Consensus 375 s~~tf~--~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~~~~~----~~~~v~v~f~ 447 (518) ...|+ .++..+|||||..+.+...+...-.-..+. +.|.-++.-++.+...... ....+. ...++.|++- T Consensus 369 -~d~~~~~~~~~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r~g~--lP~~p~~l~~~~~~~~i~yi 445 (549) T protein:vir:10 369 -VTLFQILVDSGDMTATEVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAEAGQ--LPDMPQELIDAGADVDVEYD 445 (549) T ss_pred -hhhhhhhcCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCChhhhcCCceeEEEee Confidence 11222 255568999999888877777665444443 4566666666666543211 111111 1224556654 Q ss_pred CCCCCCH-HHHH----HHHH---HHHhCC-----CCCHHHHHHHHcC--C------CCHHHHHHHHHHHHHhccccCC-- Q lcl|Aclame:pro 448 DPMSVNL-NELS----STLN---NMNSAL-----AMSVEEKVKLIHP--K------WEDEEIQAEVKRIYLENAIGEV-- 504 (518) Q Consensus 448 D~i~~d~-~~~~----~~~~---~~~~aG-----~~S~~~~v~~~~~--~------~~eeea~eev~rI~~E~~~~~~-- 504 (518) -.+.... .+.+ +.++ .+.+.+ .+....+++.+-- + -+++|+++..+.-++.|..... T Consensus 446 s~La~aq~~~~~~~i~~~~~~~~~laq~~Pe~ld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~~~~~qqq~~~~~~ 525 (549) T protein:vir:10 446 SPLNKAMRAGEGAAILQWLQQLGIVSQFDPAAAKVPNGARIARLLADYGGVPVEAMSTDEELQAQQAAEAQAAQMQQMLA 525 (549) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhcCCHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHH Confidence 3332211 1111 1111 111111 1234444444310 1 1455544433221111111100 Q ss_pred CCchhccCcCCCCC Q lcl|Aclame:pro 505 PDPEAIGGMETKGG 518 (518) Q Consensus 505 ~dp~~~~~~~~~gG 518 (518) .-+...++-+ +.+ T Consensus 526 ~a~~a~~~a~-~~~ 538 (549) T protein:vir:10 526 AAPVAAGAIK-DLS 538 (549) T ss_pred HHHHHHHHHH-hhh Confidence 0011111110 011 No 132 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=98.31 E-value=1.5e-06 Score=52.57 Aligned_cols=414 Identities=11% Similarity=-0.014 Sum_probs=162.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhh--ccCCCCcc---ccceecCchHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLW--AQGYVPTV---HDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w--~~~~~~~~---~~~~~~~~l~~~i~~~ 75 (518) ||+|+.+-. ++.+.... . ...+.|.. +.-.+| +....-+. ....+...---..++. T Consensus 1 Mg~~~~l~~------~~~~~~~~----~-------~~~~~~~~--~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ 61 (457) T protein:vir:62 1 MGFWSALFG------RGHSPALD----A-------AEGRAWEP--YDPSIYNLGATASSGERVTPHDALQVSAVFASVRL 61 (457) T ss_pred Cchhhhhhc------cccccccc----c-------cccccccc--chhhhhhccccccCCceechHHhhccHHHHHHHHH Confidence 998885421 11111000 0 00000000 000011 11111110 0111111111123344 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHh-hcC---hHHHHHHHHHHHHhhCCEEEEEEEECCeE-EEEEEcCCe Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALR-IDN---FDSKSVKIVELAGGSGVSAVKINILNGRP-SISVHSSSQ 150 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~-dn~---f~~~~~~~~e~~~a~G~~~~k~~~d~~~i-~i~~v~ad~ 150 (518) +|+-|.+=|..+--.. +....+.-...+..++. -|+ ...-++..+...+..|.+++.+..++|++ .+..+.++. T Consensus 62 ia~~iA~lp~~~~~~~-~~~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~~g~~~~l~~l~p~~ 140 (457) T protein:vir:62 62 LSETIATLPLSTYSKR-GGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAGPNIAGLDVLDPTK 140 (457) T ss_pred HHHhHhhCceEEEEec-CCccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCcc Confidence 4444433344432111 11111110111222221 121 33344455666677788888876666655 344555555 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +-+.-.... +.....|+. |. +...+.. .... . T Consensus 141 v~v~~~~~~------------~~~~~~~~~------------------y~-----~~~~g~~-~~~~---------~--- 172 (457) T protein:vir:62 141 IHVHMVMVD------------GLRRKVFEA------------------YD-----IDADGNE-VLLG---------W--- 172 (457) T ss_pred eEEEEeccC------------CccceeEEE------------------EE-----EccCCce-eEEE---------e--- Confidence 544311100 000011110 00 0110000 0000 0 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~~ 309 (518) ..+. -+.|++....+ +...|+|.+.-+...|.....+-.....-|+.|.. .-++ ... T Consensus 173 ---~~~~----------eiih~r~~~~~----~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil-----~~~ 230 (457) T protein:vir:62 173 ---FTPR----------DVLHIPGMMLP----GDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVV-----EVP 230 (457) T ss_pred ---eCcc----------ceEEecCCCCC----CceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE-----EcC Confidence 0000 02344443222 22369999988887776655554444445666443 2222 111 Q ss_pred CCCCccccccCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc-cch Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR-EVK 387 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~-~~T 387 (518) ..-........-..-.+.|.+..... -.--+++..++.++.+..+.++++..+.....|....|++|..++..++ ..+ T Consensus 231 ~~ls~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~ 310 (457) T protein:vir:62 231 GTMSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSW 310 (457) T ss_pred CCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccc Confidence 11000000000000001111110000 0001122346667777778889999988989999999999999986433 222 Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 388 ATEIWSLQDAT-VRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 388 AtEi~s~~~~t-~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) +..+...+... -.++.-+...++.+|.. ... .......+.+.++++..+..|.+++++.+.++++ T Consensus 311 ~sn~eq~~~~f~~~~l~P~~~~ie~~ln~-----------~L~---~~~~~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~ 376 (457) T protein:vir:62 311 GSGLAEQNIAFTMFSLRPWLERIEAGFNR-----------LLF---AETADRFRFVKFNLDEIKRGAPKERMELWSLGLQ 376 (457) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhc---CccccCceEEEeechhhhccCHHHHHHHHHHHHh Confidence 22222222111 11222222222222221 111 1111123456777778888899999999999999 Q ss_pred CCCCCHHHHHHHHcC-CCCHHHHHHHH-----HHH---------HHhccccCC-CCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHP-KWEDEEIQAEV-----KRI---------YLENAIGEV-PDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~-~~~eeea~eev-----~rI---------~~E~~~~~~-~dp~~~~~~~~~gG 518 (518) +|+|+.-++.+++.. -..+-++++-+ ..+ .+.++...+ .+|.+...-++.+| T Consensus 377 ~G~~T~NE~R~~~gl~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (457) T protein:vir:62 377 NGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEG 444 (457) T ss_pred CCCcCHHHHHHHhCCCCCCCCCcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCC Confidence 999999998877632 12221111111 000 000000000 01111111112222 No 133 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=98.22 E-value=2.5e-06 Score=51.31 Aligned_cols=448 Identities=8% Similarity=-0.027 Sum_probs=183.3 Q ss_pred CCcCchHHHHHHHHhcCCCCh---hhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNG---SEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~---~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) |- ...+ +|..+. ..++.+...+..+....++..+-...+.|=......+.+..++-=+-+...++.+| T Consensus 1 m~------~~~~---~~~~~~~~k~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~La 71 (535) T protein:vir:15 1 MA------DSKR---TGLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDYTTPWQAVGARGLNNLA 71 (535) T ss_pred CC------ccch---hccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHH Confidence 21 1110 111110 00112222222222222222222222222111112222222222234566666666 Q ss_pred HHHcCC----cceEEeccccc---------cchHHHH-------HHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE Q lcl|Aclame:pro 78 EYISGK----PLSIDVTGVNG---------SKDENLT-------KQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL 137 (518) Q Consensus 78 ~ll~~e----~~~i~v~~~~~---------~~d~~~~-------~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d 137 (518) +-|++- .+=+.+...+. .+....+ ..+...+..++|+..+.+++....+.|.+++..-.+ T Consensus 72 a~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~ 151 (535) T protein:vir:15 72 SKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLPEP 151 (535) T ss_pred HHHHHhhcCCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEeecC Confidence 665543 22233322221 0011223 334555888999999999999999999998776544 Q ss_pred C-CeEEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEe--------------------cCceEEEEEEEEeecccceeeeee Q lcl|Aclame:pro 138 N-GRPSISVHSSSQFWIDFK-NNEPFRFNFFEEIPT--------------------SNKADIYYLVESREIKQWDKEGKK 195 (518) Q Consensus 138 ~-~~i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~--------------------~~~~~~y~~lE~he~~~~~~~~~~ 195 (518) . +.+++..++-..|+-.-+ +|++..++.-..+.. .+.-.+|++.... .. T Consensus 152 ~~~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~---------~~ 222 (535) T protein:vir:15 152 EGSYNPMKLYRLSSYVVQRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHVYLD---------EE 222 (535) T ss_pred CCCceeeEEEEcCeeEEeeCCCCCeeEEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEEEEe---------cC Confidence 3 346788888888777643 355444332222110 0001122222111 00 Q ss_pred ccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCC-CcceEEEecCcccCccccCCCCCcchhhhh Q lcl|Aclame:pro 196 LSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGL-KSMGAYLINNSPSNTRYPHLNLGESDLSQC 274 (518) Q Consensus 196 ~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~-~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~ 274 (518) .+++...++++ +..+.+ .+. ..+. ..|+++.--+ ...++.||+|-...+ T Consensus 223 ~~~~~~~~e~~----g~~~~~------------------~~~---~~~~~~~P~i~~Rw~-----~~~ge~YGrgp~~~~ 272 (535) T protein:vir:15 223 SGDYLKYEEVE----DVEIDG------------------SDA---TYPTDAMPYIPVRMV-----RIDGESYGRSYCEEY 272 (535) T ss_pred CCcEEEEEEee----Cccccc------------------ccc---ccccccCCceeeeee-----ecCCCccccchHHHH Confidence 11121111111 000000 000 0111 1122222111 234677899999999 Q ss_pred HHHHHHHHHHHHHHHHHH-HhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccccc Q lcl|Aclame:pro 275 TNYLFAVDYFFTVYMREG-EKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFR 353 (518) Q Consensus 275 ~~~i~~lD~~~s~~~~e~-~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir 353 (518) .+-++.|+..--+...-. ...++...|+++.+....+ ..+.....|.. +..+...+..+...-+ T Consensus 273 l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~~--------l~~~~~g~~v~-------g~~~~v~~~~~~~~~~ 337 (535) T protein:vir:15 273 LGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQPRR--------LTKAQTGDFVP-------GRREDIDFLQLEKQAD 337 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceeecccccccchh--------cccCCceeeec-------CCcccceeeecccccc Confidence 999999998766665544 4466665665443211111 00111112211 1111111111222223 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccc-cCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 354 DGSYRETMEYFAQKAVSKSGYNPATFN-LGNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNK 431 (518) Q Consensus 354 ~~~~~~~i~~~l~~i~~~~G~s~~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~ 431 (518) .....+.|+.+-+.|.... +-- .+. .++..+|||||..+.+...+...-.-..+. +.|..++.-++.+..... . T Consensus 338 ~~~~~~~i~~~~~~I~~af-~~~-~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g--~ 413 (535) T protein:vir:15 338 FTVAKAVSDQIEARLSYAF-MLN-SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATS--Q 413 (535) T ss_pred hhHHHHHHHHHHHHHHHHH-hhh-hcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--C Confidence 3334445555544443332 111 122 245568999998888776666555444332 345556655555543221 1 Q ss_pred cCCCcCCceeeEEEeCCCCCCCH-----HHHHHHHHHHHhCC------CCCHHHHHHHHc-----C-C---CCHHHHHHH Q lcl|Aclame:pro 432 EKAIMRDEIRVIIEFPDPMSVNL-----NELSSTLNNMNSAL------AMSVEEKVKLIH-----P-K---WEDEEIQAE 491 (518) Q Consensus 432 ~~~~~~~~~~v~v~f~D~i~~d~-----~~~~~~~~~~~~aG------~~S~~~~v~~~~-----~-~---~~eeea~ee 491 (518) . +..+...+++++--++..-- +...+.++.+.+.+ .+....+++.+- | . -++|++++. T Consensus 414 l--P~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~~~~eev~~~ 491 (535) T protein:vir:15 414 I--PELPKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQAL 491 (535) T ss_pred C--CCCCccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHH Confidence 1 22333456777654443221 11111122221111 123344443331 1 1 255665555 Q ss_pred HHHHHHhccccCCCCchhccCc------CCCCC Q lcl|Aclame:pro 492 VKRIYLENAIGEVPDPEAIGGM------ETKGG 518 (518) Q Consensus 492 v~rI~~E~~~~~~~dp~~~~~~------~~~gG 518 (518) .++.++.++..... ....++. +++++ T Consensus 492 ~~q~~~~~~~~~~a-~~~g~~~~~~~~~~p~~~ 523 (535) T protein:vir:15 492 MMQDAAQTGIENAA-ATGGAGVGALATSSPEAM 523 (535) T ss_pred HHHHHHHHHHHHHH-HHHHhhccchhccChHHH Confidence 54433222211100 0000010 11111 No 134 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=98.16 E-value=3.4e-06 Score=50.55 Aligned_cols=428 Identities=12% Similarity=0.055 Sum_probs=167.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhH--------------------------HhhHHHHhhccchhhhhhhhhh-hhhhhcc Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEP--------------------------ELIPKYLPLVPDNQKEWSKDSY-LTSLWAQ 53 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~--------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~ 53 (518) -|.||.+-. -||-.-|..|. ...++..-.-... .......+ .+.|+ . T Consensus 8 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g-~~~~~~~~g~~~~~-e 81 (648) T protein:vir:79 8 RGFWSRISL----MWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIG-LAIMDGGGGGRDFE-E 81 (648) T ss_pred chhhhhhhh----hccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhH-HHHHhhcCCccccc-c Confidence 455555433 33421111111 1111100000000 00000000 00111 1 Q ss_pred CCCCcc--ccceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhc---ChHHHHHHHHHHHHhhC Q lcl|Aclame:pro 54 GYVPTV--HDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRID---NFDSKSVKIVELAGGSG 128 (518) Q Consensus 54 ~~~~~~--~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn---~f~~~~~~~~e~~~a~G 128 (518) ++..-. .+-..+-+.....++.+|+.+.+-+..|........+.... ..+ .+.-| ..+..++..+...+..| T Consensus 82 pp~d~~~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~-~~l--l~rPn~~~t~~~f~~~l~~~lll~G 158 (648) T protein:vir:79 82 PEFDFNEITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRM-RFT--LMAEATQIPTNQLFIEIAEDLVKYC 158 (648) T ss_pred CCcCHHHHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHH-HHH--hhccCCCCCHHHHHHHHHHHHHhcC Confidence 111111 11112334455677777887777665554332111111111 111 11211 33445566677788889 Q ss_pred CEEEEEEEECCeEEE---EEEcC------CeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccce Q lcl|Aclame:pro 129 VSAVKINILNGRPSI---SVHSS------SQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGG 199 (518) Q Consensus 129 ~~~~k~~~d~~~i~i---~~v~a------d~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~ 199 (518) .+++.+..++..... ..+.. ..++|+ +. +..++. . ...+ T Consensus 159 NAYveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl--~p--------------~~v~v~--~--------------d~~g 206 (648) T protein:vir:79 159 NVVIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPL--NL--------------ASMKVK--R--------------DKFG 206 (648) T ss_pred CeEEEEEecCCCccchhhhhhhhccccceeeeEee--cC--------------ceeEEE--E--------------cCCC Confidence 988877655432111 00000 111121 00 000000 0 0011 Q ss_pred EEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHH Q lcl|Aclame:pro 200 FVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLF 279 (518) Q Consensus 200 ~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~ 279 (518) .|....|...++... ..+ .++ -+.|++.. ...+.++|+|.+..+.+.|. T Consensus 207 ~~~~Y~y~~~g~~~~--------~~~---------~~~----------dIIHik~~----~~~d~~~GlSpi~~a~~aI~ 255 (648) T protein:vir:79 207 MIKGWQQEQEGQDKP--------QKF---------KPE----------DIVHIYYK----REKGRAFGTPWLLPALDDIR 255 (648) T ss_pred ceeeeEEEecCCcee--------EEe---------cCc----------cEEEEccC----CCCCCceeccHHHHHHHHHH Confidence 122222222111100 000 000 12344421 11245679999988888775 Q ss_pred HHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCCcchh----heeeecCCcCCCCCCCccceEecc--ccc Q lcl|Aclame:pro 280 AVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDED----YFMQFKGTLDAGAKLNDMIQFMQG--DFR 353 (518) Q Consensus 280 ~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~----~~~~~~~~~~~~~~~~~~i~~~~~--~ir 353 (518) ....+-.-..+=|+.|...-.| +... .+.. ..+..++ .........-.++........+.+ .-. T Consensus 256 l~~aa~~~~~~fF~NGa~P~gi----l~~~-~~~~-----~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~~~s~~ 325 (648) T protein:vir:79 256 ALRQVEENVLRLVYRNLHPLWH----VKVG-LEQE-----GFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISSIASNQ 325 (648) T ss_pred HHHHHHHHHHHHHhccCCccEE----EEeC-CCcc-----chHHHHHHHHHHHHhcccccccccccccceeeccccCCHH Confidence 5433332233335655432221 2111 0000 0111111 111111111111111111111222 124 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccCCccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 354 DGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKAT-EIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKE 432 (518) Q Consensus 354 ~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAt-Ei~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~ 432 (518) +.++.+..+...+.|....|++|..+|+.++.-.++ +... +....++...+..+...+...+...+.+...+ T Consensus 326 dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~ss~stae~~~--~~~~~~i~~l~~~i~~~le~~~~~~ll~e~~l----- 398 (648) T protein:vir:79 326 IIDAKEYLKHFEQRAFTVLGVSELMMGRGGTASRSTGDNLS--SDFKDRIKALQKVMATFINEFMVKEILMEGGF----- 398 (648) T ss_pred HHHHHHHHHHHHHHHHHHhCCCHhHcccCCCccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----- Confidence 557888888888999999999999998754332222 2221 12223334444444444433322222222111 Q ss_pred CCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCC-CCHHHHHHHHH----HHH-HhccccCCCC Q lcl|Aclame:pro 433 KAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPK-WEDEEIQAEVK----RIY-LENAIGEVPD 506 (518) Q Consensus 433 ~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~-~~eeea~eev~----rI~-~E~~~~~~~d 506 (518) .......+.+.++|++....|...+++...+++++|+||+.++.+++... ..+.+....+. ... +.......++ T Consensus 399 ~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~GilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 478 (648) T protein:vir:79 399 DPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHNAISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPT 478 (648) T ss_pred cccccccceEEEeecccchhhHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCC Confidence 11122345688999998888999999999999999999999988776421 22211111110 000 0000011111 Q ss_pred chhccCcCCCCC Q lcl|Aclame:pro 507 PEAIGGMETKGG 518 (518) Q Consensus 507 p~~~~~~~~~gG 518 (518) |...+ -.+.+| T Consensus 479 ~~~~~-~~~a~~ 489 (648) T protein:vir:79 479 PAGGS-SASASG 489 (648) T ss_pred CCCCC-CCCccc Confidence 21111 111111 No 135 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=97.99 E-value=7.8e-06 Score=48.59 Aligned_cols=448 Identities=8% Similarity=-0.023 Sum_probs=179.9 Q ss_pred HHHHHHHHhcCCCCh---hhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCC Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNG---SEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGK 83 (518) Q Consensus 7 ~~~~~~~w~~g~p~~---~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e 83 (518) |-...+ +|-+.. ..++.+...+..+....++..+-...+.|=......+.+..++-=+-+...++.+|+-|++- T Consensus 1 m~~~~~---~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ 77 (535) T protein:vir:33 1 MADSKR---TGLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDYTTPWQAVGARGLNNLASKLMLA 77 (535) T ss_pred CChhhh---hccChhHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHHHHHHh Confidence 222221 111110 01122222222233333332222222222111111122212221233566666666665543 Q ss_pred ----cceEEecccccc---------ch-------HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC-CeEE Q lcl|Aclame:pro 84 ----PLSIDVTGVNGS---------KD-------ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN-GRPS 142 (518) Q Consensus 84 ----~~~i~v~~~~~~---------~d-------~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i~ 142 (518) .+=+.+...+.. .- +.....+...+..++|+..+.+++....+.|.+++..-.+. +.++ T Consensus 78 ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~ 157 (535) T protein:vir:33 78 LFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLPEPEGSYNP 157 (535) T ss_pred hcCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEeecCCCCcee Confidence 222333222210 00 12223455568899999999999999999999988866554 3467 Q ss_pred EEEEcCCeeEEEEE-cCcEEEEEEEEEEEe--------------------cCceEEEEEEEEeecccceeeeeeccceEE Q lcl|Aclame:pro 143 ISVHSSSQFWIDFK-NNEPFRFNFFEEIPT--------------------SNKADIYYLVESREIKQWDKEGKKLSGGFV 201 (518) Q Consensus 143 i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~--------------------~~~~~~y~~lE~he~~~~~~~~~~~~~~~I 201 (518) +..++-..|+-.-+ +|++..++.-.+++. .+...+|++.-+. ...+++.. T Consensus 158 f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~~---------~~~~~~~~ 228 (535) T protein:vir:33 158 MKLYRLSSYVVQRDAYGNVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHVYLD---------EESGDYLK 228 (535) T ss_pred eEEEEcCeeEEeeCCCCCeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEEEee---------CCCCcEEE Confidence 88888888777643 355444332221110 0001122211100 00111111 Q ss_pred EEEEEeccCCccccccccccccccccccccccCcccceeecCC-CcceEEEecCcccCccccCCCCCcchhhhhHHHHHH Q lcl|Aclame:pro 202 TYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGL-KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFA 280 (518) Q Consensus 202 ~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~-~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~ 280 (518) .++++ ...+...... .+. ..|+++.--+ ...++.||+|-...+.+-++. T Consensus 229 ~~~~~------------------------~~~~~~~~~~-~~~~~~P~i~~Rw~-----~~~ge~YGrgp~~~~l~D~k~ 278 (535) T protein:vir:33 229 YEEVE------------------------DVEIDGSDAT-YPTDAMPYIPVRMV-----RIDGESYGRSYCEEYLGDLRS 278 (535) T ss_pred EEEEe------------------------Cccccccccc-cccccCCceeeeee-----ecCCCccccchHHHHHHHHHH Confidence 11111 0000000000 001 1122222111 234677899999999999999 Q ss_pred HHHHHHHHHHHH-HhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHH Q lcl|Aclame:pro 281 VDYFFTVYMREG-EKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRE 359 (518) Q Consensus 281 lD~~~s~~~~e~-~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~ 359 (518) |+..--+...-. ...++...||++.+....+ ..+.....|.. +..+...+..+...-+.....+ T Consensus 279 L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~~--------~~~~~~g~~v~-------g~~~~v~~~~~~~~~~~~~~~~ 343 (535) T protein:vir:33 279 LENLQEAIVKMSMISAKVIGLVNPAGITQPRR--------LTKAQTGDFVP-------GRREDIDFLQLEKQADFTVAKA 343 (535) T ss_pred HHHHHHHHHHHHHHHhcCceeeccccccchhh--------cccCCceeeec-------CCcccceeeecccccchhHHHH Confidence 998766665544 4466666665443221111 00111112211 1111111111222223333444 Q ss_pred HHHHHHHHHHHHhCCCccccc-cCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCcC Q lcl|Aclame:pro 360 TMEYFAQKAVSKSGYNPATFN-LGNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEKAIMR 437 (518) Q Consensus 360 ~i~~~l~~i~~~~G~s~~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~~~~~ 437 (518) .|+.+-+.|.... +-- .+. .++..+|||||..+.+...+...-.-..+. +.|..++.-++.+..... .. +.. T Consensus 344 ~i~~~~~~I~~af-~~~-~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g--~l--P~~ 417 (535) T protein:vir:33 344 VSDQIEARLSYAF-MLN-SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATS--QI--PEL 417 (535) T ss_pred HHHHHHHHHHHHH-hhh-hcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--CC--CCC Confidence 5555544444332 111 122 245568999998888776666555444333 345556655555543221 11 223 Q ss_pred CceeeEEEeCCCCCCCH-----HHHHHHHHHHHhCC------CCCHHHHHHHHc-----C-C---CCHHHHHHHHHHHHH Q lcl|Aclame:pro 438 DEIRVIIEFPDPMSVNL-----NELSSTLNNMNSAL------AMSVEEKVKLIH-----P-K---WEDEEIQAEVKRIYL 497 (518) Q Consensus 438 ~~~~v~v~f~D~i~~d~-----~~~~~~~~~~~~aG------~~S~~~~v~~~~-----~-~---~~eeea~eev~rI~~ 497 (518) +...+++++--++..-- +...+.++.+.+.+ .+....+++.+- | . -++||+++..++-.+ T Consensus 418 p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~~d~~id~d~~~~~~a~~~Gvp~~~i~~~~ee~~~~~~q~~~ 497 (535) T protein:vir:33 418 PKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAA 497 (535) T ss_pred CccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhhChhhhhccCCHHHHHHHHHHHcCCCHhHhcCCHHHHHHHHHHHHH Confidence 33456777654443221 11111122211111 123344443331 1 1 134444433332211 Q ss_pred hccccCCCCchhccCc--CCCCC Q lcl|Aclame:pro 498 ENAIGEVPDPEAIGGM--ETKGG 518 (518) Q Consensus 498 E~~~~~~~dp~~~~~~--~~~gG 518 (518) .++..... ....++. --..| T Consensus 498 ~~~~~~~~-~~~g~~~~~~~~~~ 519 (535) T protein:vir:33 498 QTGVENAA-AAGGAGVGALATSS 519 (535) T ss_pred HHHHHHHH-HhhhhhhcchhhcC Confidence 11110000 0000000 01111 No 136 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=97.93 E-value=1e-05 Score=47.94 Aligned_cols=456 Identities=11% Similarity=-0.002 Sum_probs=171.3 Q ss_pred HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCc-- Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKP-- 84 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~-- 84 (518) |+...|+=|..- ...+..+....++..+-...+.+-........+..++-=+.+...++.+|+-|++-. T Consensus 1 m~~~~~~r~~~l---------~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltp 71 (555) T protein:vir:17 1 MKHSAQAKYMML---------RADREDYLDSGRQSARLTLPYILTDEGHVQGGYLPTPWQSVGSKGVNVLASKLMLSLFP 71 (555) T ss_pred ChhHHHHHHHHH---------HHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHHHHHHhhcC Confidence 666665544322 111222222222222211222111111111222233434457777777777766543 Q ss_pred ---ceEEecccccc-----chHH-----------HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEE Q lcl|Aclame:pro 85 ---LSIDVTGVNGS-----KDEN-----------LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISV 145 (518) Q Consensus 85 ---~~i~v~~~~~~-----~d~~-----------~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~ 145 (518) +=+.+...+.. -+.. ....+...+..++|+..+.++.....+.|.+++ |.+.+.++ . T Consensus 72 p~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--y~~~~~~~--~ 147 (555) T protein:vir:17 72 VNTSFFKLQINDAEIDNLGMDEQARSEIDLSLSRIERIVTQDIAESSDRVHLEMAMKHLIVTGNALL--YQGKKNLK--L 147 (555) T ss_pred CCCcccccccCHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEE--EecCCcee--E Confidence 22333322211 0111 222345556679999999999999999999875 55555433 4 Q ss_pred EcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccce--------eeeeeccceEEEEEEEeccCCc--cc Q lcl|Aclame:pro 146 HSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWD--------KEGKKLSGGFVTYSVIKIDGDK--TT 214 (518) Q Consensus 146 v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~--------~~~~~~~~~~I~n~ly~~~~~~--~v 214 (518) ++-+.|+-..+ +|++..++.-.+++...-. .+|.... ..........+.+.++..+... .+ T Consensus 148 ~pl~~y~v~~d~~G~vd~v~rk~~~t~~ql~--------~~fg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 219 (555) T protein:vir:17 148 YPLDRFVVSRDGEGNVMEIVTEEQIDRSLLP--------EEFQKVGGLEGAPDSNAVGEDGPKMGVTAPGGRDKGKSNDA 219 (555) T ss_pred EEcCeEEEeeCCCcCeeEEEeeeeecHHHHH--------HHhhhccccchhhhhhhccccchhhhhhhhcccccCCCcce Confidence 45455444332 3554444332221110000 0000000 0000000000101110000000 00 Q ss_pred cc-cccccccccccccccccCcccce---e-ecCC-CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 215 PI-SAERLPEQITSYLHTNDIQLNHS---V-SIGL-KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY 288 (518) Q Consensus 215 ~~-~~~~~~~~~~~~~~~~~~~~~~~---~-~tg~-~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~ 288 (518) .+ +...... ..+..+.++....+ + ..|. ..|+++.-.+ ...++.||+|--..+.+-++.|+..--+. T Consensus 220 ~v~t~~~~~~--~~~~~~~e~~~~~v~~~l~e~g~~e~P~i~~Rw~-----~~~ge~YGrgp~~~~l~D~k~L~~l~~~~ 292 (555) T protein:vir:17 220 LVYTYVCRKD--GQVKWHQECDGKVIPGSNSSAPYTHNPWIPLRFN-----IVDGEAYGRGRVEEFMGDLKSLEALSQAM 292 (555) T ss_pred eEeecccccC--CeeEEEEecCceeccccccccCcccCCeeeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 00 0000000 00000011110000 0 1111 1122222112 23467789999999999999999876656 Q ss_pred HHHH-Hhccceeeechhh-hccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEec----cccc-HHHHHHHH Q lcl|Aclame:pro 289 MREG-EKTKTKIAASERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQ----GDFR-DGSYRETM 361 (518) Q Consensus 289 ~~e~-~~g~~ri~v~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~----~~ir-~~~~~~~i 361 (518) ..-. ...++...|+++. +....-..+ ....+.. +.. +.++.++ .++. ..+-++.+ T Consensus 293 l~~~~~~~~pp~lv~~~g~~~~~~l~~~---------~~g~v~~-------g~~--~~v~~~~~~~~~~~~~~~~~i~~~ 354 (555) T protein:vir:17 293 VEGSAASAKVVFMVSPSATTKPQNLALA---------ANGAIIQ-------GRP--DDVSVVQANKAADFRTVLEMIQKL 354 (555) T ss_pred HHHHHHHhCCceeeccccccCcceeecC---------CCceeec-------CCc--ccceeeeccccchhhHHHHHHHHH Confidence 5544 4566666665443 222110011 1111111 111 1122222 1233 12223333 Q ss_pred HHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCcCCce Q lcl|Aclame:pro 362 EYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEKAIMRDEI 440 (518) Q Consensus 362 ~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~~~~~~~~ 440 (518) ..-++.+.+. ++ .-|+..+|||||..+.+...+...-.-..+. +.|.-++.-++.+..... .....+.... T Consensus 355 ~~~I~~aFm~--~~----~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~L~Pli~R~~~il~r~g--~lP~~p~~~v 426 (555) T protein:vir:17 355 EQRISDAFLM--LQ----VRQSERTTATEVQATVQELNEQIGGIYSNLTTELLQPYLARKLHLLQKQR--KLPQLPKDLV 426 (555) T ss_pred HHHHHHHHhh--cC----CCCcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCCCHhhh Confidence 3333322111 11 1255668999998888887777766655553 556667777777654321 1122222222 Q ss_pred eeEEEeCCCCCC-----CHHHHHHHHHHHHhCC-------CCCHHHHHHHH---cCC------CCHHHHHHHHHHHHHh- Q lcl|Aclame:pro 441 RVIIEFPDPMSV-----NLNELSSTLNNMNSAL-------AMSVEEKVKLI---HPK------WEDEEIQAEVKRIYLE- 498 (518) Q Consensus 441 ~v~v~f~D~i~~-----d~~~~~~~~~~~~~aG-------~~S~~~~v~~~---~~~------~~eeea~eev~rI~~E- 498 (518) .+++.- ++.. +.+...+.++.+.+.+ .+....+++.+ ++- -++|++++..+.-+++ T Consensus 427 ~~~i~~--~l~~l~r~~~~~~l~~~~~~laq~~~~p~~~d~id~d~~~~~~a~~~Gv~p~~ivrs~eev~~~rq~~~~~~ 504 (555) T protein:vir:17 427 QPTVVA--GLWGVGRGQDKQQLMEFITTLAQTMGPEIAMKYINPTEFIKRLAAAQGIDTLQLINSPETMKQLGDQQKQDM 504 (555) T ss_pred ccceee--hHHHHHHHHHHHHHHHHHHHHHhhcCchhHhhcCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHH Confidence 232221 1110 1111112222221211 12333444333 210 1445444332211111 Q ss_pred -------ccccCCCCch-----hccCcCC-----CCC Q lcl|Aclame:pro 499 -------NAIGEVPDPE-----AIGGMET-----KGG 518 (518) Q Consensus 499 -------~~~~~~~dp~-----~~~~~~~-----~gG 518 (518) ++......+- ..+..+. .|+ T Consensus 505 ~q~~~~~qa~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 541 (555) T protein:vir:17 505 VQASLINQAGQLAKTPMAEQAMQLIQQQQEGAQDAGA 541 (555) T ss_pred HHHHHHHHHHHHHhhhhhhhHHhccccchhhhhHHHH Confidence 1000000000 0000000 011 No 137 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=97.90 E-value=1.2e-05 Score=47.56 Aligned_cols=404 Identities=11% Similarity=0.028 Sum_probs=170.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i~~~~A 77 (518) ||+...|..+.|. ..+...+..-.... ...++. ....+. ...-++..---.+++.+| T Consensus 1 M~~~~~~f~~~~r---~~~~~~~~~~~~~~---------------~~~~~g--~~~~~~~v~~~~al~~~~v~~~i~~ia 60 (429) T protein:vir:10 1 MDSVKKFFNFEKR---QTSQVIELNKDDEK---------------LLEWLG--ISPSTISVKGKNALKVATVFACIKILS 60 (429) T ss_pred Cchhhhhhccccc---CcccccccCCChHH---------------HHHHhc--CCCCcceechhhhhccHHHHHHHHHHH Confidence 9988777765431 11110000000000 011111 111111 111122222233455556 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCe Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQ 150 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~ 150 (518) +-|.+=+..+--...+. ..+.....+..+|.. | ....-++..+...+..|.+++.+..+ .|++ .+-.++++. T Consensus 61 ~~ia~l~~~~~~~~~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~ 139 (429) T protein:vir:10 61 ESVSKLPLKIYQEDEYG-IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASK 139 (429) T ss_pred HhhccCceEEEEecCCc-eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCce Confidence 65544343332121111 111112223333321 1 12233445556667778888887665 3443 566666666 Q ss_pred eEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 151 ~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) +-+.-.+ +... .+...|+ .+... +.... + T Consensus 140 v~v~~~~~~~~~-----------~~~~~~~-------------------------~~~~~-g~~~~---------~---- 169 (429) T protein:vir:10 140 VTVYIDDVGLLN-----------SKTKMWY-------------------------VVNTG-GQQRV---------L---- 169 (429) T ss_pred eEEEEcCccccc-----------ccceEEE-------------------------EEccC-CeEEE---------E---- Confidence 6553221 1100 0000010 01100 00000 0 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc-cceeeechhhhcc Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKT-KTKIAASERMFRK 308 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g-~~ri~v~~~~l~~ 308 (518) .+. -+.|++.... .+...|+|.+..+...+.....+-.....-|+.| .+.-++.- +. T Consensus 170 -----~~~----------evih~~~~~~----~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~---~~ 227 (429) T protein:vir:10 170 -----KPE----------EILHFKNGIT----LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQY---VG 227 (429) T ss_pred -----ccc----------cEEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEc---CC Confidence 000 0334443211 1223599999988888877655555455556665 34433321 11 Q ss_pred CCCCCccccccCCCcchhheeeecC--CcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc- Q lcl|Aclame:pro 309 KVNKSTDKEEWSMNVDEDYFMQFKG--TLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE- 385 (518) Q Consensus 309 ~~~~~~~~~~~~~d~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~- 385 (518) ..+. ..... .-..-.+.|..... .. .--+++..++.++....+.++++..+...+.|....|++|..++..++. T Consensus 228 ~l~~-e~~~~-~~~~~~~~~~g~~n~~~~-~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~ 304 (429) T protein:vir:10 228 DLNE-DAKKV-FRENFESMSSGLQNSHRI-ALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKAT 304 (429) T ss_pred CCCH-HHHHH-HHHHHHHHhccccccCce-eecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC Confidence 0000 00000 00000111111100 00 0011223466677677788999999999999999999999999864332 Q ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 386 V-KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNM 464 (518) Q Consensus 386 ~-TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~ 464 (518) . ++.+. ....++.+|..++..+-......... .......+.+.+++++-+..|..++++.++++ T Consensus 305 ~sn~e~~-------------~~~f~~~~l~P~~~~ie~~ln~kl~~--~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~ 369 (429) T protein:vir:10 305 LNNIEQQ-------------QQQFYTDTLQATLTMYEQEMTYKLFL--DSELDKGFYSKFNVDAILRADIKTRYEAYRTG 369 (429) T ss_pred cccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcC--hhhcCCCcEEEeechhhhcCCHHHHHHHHHHH Confidence 1 22121 11123334444444333322211100 01111234577777788889999999999999 Q ss_pred HhCCCCCHHHHHHHHcCCCCH-HHHHHHH-----HHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 465 NSALAMSVEEKVKLIHPKWED-EEIQAEV-----KRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 465 ~~aG~~S~~~~v~~~~~~~~e-eea~eev-----~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +.+|+|++.++.+++. +.. +..++-+ ..+.. .........+..+.-..+|+ T Consensus 370 ~~~G~~T~NE~R~~~g--l~p~~ggD~~~~~~n~~~~d~-~~~~~~k~g~~~~~~~~~~~ 426 (429) T protein:vir:10 370 IQGGFLKPNEARSKED--LPPEAGGDRLLVNGNMLPIDM-AGQAYLKGGDTNGEVSKEGN 426 (429) T ss_pred HhCCCcCHHHHHHHhC--CCCCCCcCeeeecccccchhh-ccccccCCCCCCCCCCCCCC Confidence 9999999999877663 211 1111111 01100 00000000000000011111 No 138 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=97.80 E-value=1.8e-05 Score=46.54 Aligned_cols=451 Identities=8% Similarity=0.010 Sum_probs=175.2 Q ss_pred HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCc-- Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKP-- 84 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~-- 84 (518) |+..+++=|+-. ++ ..+....++..+-...+.+=......+....++-=+.+...++.+|+-|.+-. T Consensus 1 mk~~~~~~~~~l------kR-----~~~e~~w~e~a~~tlP~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ltp 69 (510) T protein:vir:63 1 MKTTAAMLWEKL------RD-----GSVEQRAIEFAKTTLPYLMVDPMSGSRGVVEHDFQSAGALLVNNLAAKLARSLFP 69 (510) T ss_pred ChhHHHHHHHHH------hc-----cchHHHHHHHHHhhccccCCCCCCccccccCCCccchHHHHHHHHHHHHHhhhcC Confidence 888887766421 11 11111111111111111110001111111111111235566666666555442 Q ss_pred ---ceEEecccccc------ch----------HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEE Q lcl|Aclame:pro 85 ---LSIDVTGVNGS------KD----------ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISV 145 (518) Q Consensus 85 ---~~i~v~~~~~~------~d----------~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~ 145 (518) +=+.+...+.. ++ +.....+...+..++|+..+.+++....+.|.+++. .+.+..++.. T Consensus 70 p~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Li~~G~a~l~--~~~~~~~~~~ 147 (510) T protein:vir:63 70 TGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLY--RDSDAATVVA 147 (510) T ss_pred CCCcccccCCChHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEE--EcCCCcEEEE Confidence 22333222110 00 112234666788899999999999999999997554 4555445666 Q ss_pred EcCCeeEEEEE-cCcEEEEEEEEEEEec----CceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFK-NNEPFRFNFFEEIPTS----NKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAER 220 (518) Q Consensus 146 v~ad~~~P~~~-~g~~~~~~f~~~~~~~----~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~ 220 (518) ++-..|+-.-+ +|++..+++-..+... +.......-..+ ...+....|-+.+|+.++.+ . + T Consensus 148 ~pl~~y~v~~d~~G~vd~i~rr~~~t~~~l~e~~~~~~~~~~~~--------~~~~~~v~v~~~V~~~~~~~-~-----~ 213 (510) T protein:vir:63 148 WSLRSYAVRRDATGRWMDIVLKQRYKSKDLDEEYKQDLMRAGRN--------LSGSGSVDLYTHVQRKKGTA-M-----E 213 (510) T ss_pred EEcceeEEeeCCCcCeeEEEeeeeccHHHHhHHhhhhhhccccc--------cCCCcceEEEEEEEeecCCC-c-----e Confidence 66666665433 4666555443322210 000000000000 00011223444444432211 0 0 Q ss_pred cccccccccccccCcccceeecCC---CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhcc Q lcl|Aclame:pro 221 LPEQITSYLHTNDIQLNHSVSIGL---KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR-EGEKTK 296 (518) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~tg~---~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~-e~~~g~ 296 (518) .. +.+.+.++... ....+. ..|+++.-- + ...++.||+|--..+.+-++.|+..--.... .....+ T Consensus 214 ~~---sv~~e~dg~~~--~~~~~~~~~e~P~~~~Rw----~-~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~ 283 (510) T protein:vir:63 214 YA---ELYHEIDGVRV--GKEGRWPIHLCPYIVPTW----N-LAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLE 283 (510) T ss_pred EE---EEEEEecCcee--ccccccccccCceeeeee----e-ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 00 00000011000 001111 123332211 2 2346778999999999999999876444433 444555 Q ss_pred ceeeechhh-hccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEec--ccccHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 297 TKIAASERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQ--GDFRDGSYRETMEYFAQKAVSKSG 373 (518) Q Consensus 297 ~ri~v~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~ir~~~~~~~i~~~l~~i~~~~G 373 (518) ....|+++- ..... ..+.....+. +|.. +.++.++ +..+...-.+.|+.+-+.|.... T Consensus 284 ~~~lv~p~g~~~~~~---------~~~~~~g~~v-------~g~~--~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af- 344 (510) T protein:vir:63 284 VLNLVDEAKGAVVDD---------YQDAEMGDYV-------PGGA--EAVRAYERGDYNKMAAIQQSLQAVVVRLNQAF- 344 (510) T ss_pred CCcccCcccccchhh---------hccCCCceee-------cCCc--ccceeeecCcccchHHHHHHHHHHHHHHHHHH- Confidence 554554322 21110 0111111111 1111 1122222 22222323334444433333322 Q ss_pred CCcccc-ccCCccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeE-EEeCCCC Q lcl|Aclame:pro 374 YNPATF-NLGNREVKATEIWSLQDATVRKIEKKKRL-IQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVI-IEFPDPM 450 (518) Q Consensus 374 ~s~~tf-~~d~~~~TAtEi~s~~~~t~~t~~~~~~~-~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~-v~f~D~i 450 (518) + .++ ..++..+|||||..+.+...+...-.-.. -.+.|..++.-++.+..... . -..+.+...+. |++-..+ T Consensus 345 ~--~~l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g--l-~p~p~~~~~~~~v~~is~L 419 (510) T protein:vir:63 345 M--YGANQRDAERVTAEEVRITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDDAL--L-QGLITKQHKPAIETGLPAL 419 (510) T ss_pred H--hhcccCCCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc--C-CCCCchhcccceecchhHH Confidence 1 111 12455689999988887766665543333 23345556665555543211 1 11222222221 2222111 Q ss_pred CCCHH--HHHHHHHHHHhCCC-------CCHHHHHHHH---cC---C---CCHHHHHHHHHHHHHhccccCCCCchhccC Q lcl|Aclame:pro 451 SVNLN--ELSSTLNNMNSALA-------MSVEEKVKLI---HP---K---WEDEEIQAEVKRIYLENAIGEVPDPEAIGG 512 (518) Q Consensus 451 ~~d~~--~~~~~~~~~~~aG~-------~S~~~~v~~~---~~---~---~~eeea~eev~rI~~E~~~~~~~dp~~~~~ 512 (518) ....+ ......+.+-..+. +-...+++.+ .+ . -++|+++++.++...+.+...........+ T Consensus 420 araq~~~~l~~~~q~l~~~~~~aq~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~qq~~~~~~~~~~~~~~ 499 (510) T protein:vir:63 420 SRSAAVQSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEQQRQQAAQAQAAQETLLEG 499 (510) T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHhCCChhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11111 11111111111111 1244444443 22 1 156666665544222221111000111111 Q ss_pred c----CCCCC Q lcl|Aclame:pro 513 M----ETKGG 518 (518) Q Consensus 513 ~----~~~gG 518 (518) - ++.-| T Consensus 500 a~~~~~~~~g 509 (510) T protein:vir:63 500 ASDMTNALAG 509 (510) T ss_pred HHhhcccccC Confidence 1 22223 No 139 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=97.76 E-value=2.2e-05 Score=46.14 Aligned_cols=410 Identities=10% Similarity=-0.043 Sum_probs=169.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc-ccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-HDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~l~~~i~~~~A~l 79 (518) ||+.+.|...-+ +.+ +....+.....+. +....+.. .||....... ...-+..+.-...++.+|+- T Consensus 1 MG~f~~lf~~~~----~~~---~~~~~~~~~~~~~-----~~~~~~~~-~~g~~~~~~v~~~~al~~~~v~~ci~~ia~~ 67 (422) T protein:vir:13 1 MGFLRGLFNKKN----NND---EKRSNYDEDIGID-----ISDSNFWE-KFGIKLNFSVRGKRALKENTVYVCTKIRAES 67 (422) T ss_pred CchhhhhhhccC----Ccc---chhhhhhhccccc-----cCcchhhh-hccccCCcccchhhhhccHHHHHHHHHHHHh Confidence 998776533210 111 0000000000000 00000000 0111110001 11112333333445666666 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhc-ChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRID-NFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFK 156 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn-~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~ 156 (518) |.+=|..+.=. .+...+..+...|..--..+ ....-++..+...+..|.+++.+..+ +|++ .+-.++|+.+-++.. T Consensus 68 iA~lp~~~~~~-~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~ 146 (422) T protein:vir:13 68 IGKLSLKIYKD-KEEYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIID 146 (422) T ss_pred hhhCceEEEec-CcccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEc Confidence 65545444211 11222222333332100011 11233444455566778887777554 3554 567777777776543 Q ss_pred c-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 157 N-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 157 ~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) + |.... .+.+++. ....+ +.... +. T Consensus 147 ~~~~~~~-----------~~~~~y~------------------------~~~~~-g~~~~------------------~~ 172 (422) T protein:vir:13 147 DDNFLSS-----------LSKVWYV------------------------VTDKN-GKEHK------------------LL 172 (422) T ss_pred CCcceec-----------cceEEEE------------------------EEeCC-CeEEE------------------Ec Confidence 2 21100 0001110 00000 00000 00 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCCCc Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNKST 314 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~~~ 314 (518) +. -+.|++.. + ..+..+|+|.+.-+.+.|.-...+-.....-|+.|. ++-++ .....-.. T Consensus 173 ~~----------eiih~~~~--~--~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil-----~~~~~l~~ 233 (422) T protein:vir:13 173 PD----------EMLHFIGD--I--TLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIV-----QYVGDLDE 233 (422) T ss_pred cc----------ceEEEcCC--C--CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----EeCCCCCH Confidence 00 02233311 1 112346999999998888755444433334456643 33322 11111000 Q ss_pred cccccCCCcchhheeeecCC-cCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGT-LDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIW 392 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~-~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~ 392 (518) ......-+.-...|...... .-.--+++..++.++....+.++.+..+...+.|....|++|..++..++. -+..|- T Consensus 234 e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~e~- 312 (422) T protein:vir:13 234 KAKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNNLTE- 312 (422) T ss_pred HHHHHHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHH- Confidence 00000000000111111000 000011223466677777788899999999999999999999999864433 122111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCH Q lcl|Aclame:pro 393 SLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSV 472 (518) Q Consensus 393 s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~ 472 (518) .. ...++.+|..++..+-.......... ......+.+.+++++....|.+++++.+++++.+|+|+. T Consensus 313 -~~----------~~f~~~~l~P~~~~ie~~l~~~Ll~~--~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~ 379 (422) T protein:vir:13 313 -QQ----------KDFYVTTLQSSLTVYEQEIQDKLFSQ--YETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEA 379 (422) T ss_pred -HH----------HHHHHHHHHHHHHHHHHHHHHhhCCh--hhhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCH Confidence 11 11223334444433332222111100 001112456677778788899999999999999999999 Q ss_pred HHHHHHHcCCCCH-HHHHHHHHHHHHhccc--cCCCCchhccCcCCCCC Q lcl|Aclame:pro 473 EEKVKLIHPKWED-EEIQAEVKRIYLENAI--GEVPDPEAIGGMETKGG 518 (518) Q Consensus 473 ~~~v~~~~~~~~e-eea~eev~rI~~E~~~--~~~~dp~~~~~~~~~gG 518 (518) -++.+++. +.. +..++-+.. -+.. ....++..- -+.+|| T Consensus 380 NE~R~~~g--l~p~~ggD~~~~~---~n~~~l~~~~~~~~~--~g~~~g 421 (422) T protein:vir:13 380 NEARRREN--LPPVEGGDRLLVN---GNMIPIEMAGEQYKK--GGEKGG 421 (422) T ss_pred HHHHHHhC--CCCCCCcCeeeec---cCccchhhccccccc--CCCcCC Confidence 99877663 222 111111100 0000 000111111 134444 No 140 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=97.73 E-value=2.4e-05 Score=45.90 Aligned_cols=396 Identities=10% Similarity=-0.044 Sum_probs=164.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+...|.+.-...-...| ..+...+... +. .+.|....+ ...+...---.+++.+|+-+ T Consensus 1 Mg~f~~lf~r~~~~~~~~~--------~~~~~~~~~~--------~~-~~~g~~v~~---~~al~~~~v~~~i~~Ia~~i 60 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTP--------AELADAIGLS--------YD-TYTGKQISS---QRAMRLTAVFSCVRVLAESV 60 (414) T ss_pred CchhhhhhccCccCcccch--------hhHhHhhccC--------cc-ccCCceech---hhhhccHHHHHHHHHHHHHh Confidence 9988765433211100000 0000000000 00 000111111 11122222233445666665 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEECCeE-EEEEEcCCeeEEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINILNGRP-SISVHSSSQFWID 154 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i-~i~~v~ad~~~P~ 154 (518) ..=|..+--...+ +........+..+|.. | ....-++..+...+..|.+++.+.-++|++ .+-.++|+.+.+. T Consensus 61 a~~p~~~~~~~~~-~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~~g~~~~L~~l~~~~v~~~ 139 (414) T protein:vir:44 61 GMLPCNLYHLNGS-LKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKAFGEVAELLPVDPGCVVPK 139 (414) T ss_pred ccCceEEEEecCC-ceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCceEEEE Confidence 5444333211111 1111111122233321 1 122223344445566687777665555654 3555566655543 Q ss_pred EEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccC Q lcl|Aclame:pro 155 FKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) Q Consensus 155 ~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (518) ..++ ...+|+ +... .+... .+ T Consensus 140 ~~~~---------------~~~~y~-------------------------~~~~-~g~~~---------~~--------- 160 (414) T protein:vir:44 140 LNSS---------------WEPVYQ-------------------------VTFP-DGSTD---------VL--------- 160 (414) T ss_pred ECCC---------------CcEEEE-------------------------EEec-CceEE---------EE--------- Confidence 2111 001111 0000 00000 00 Q ss_pred cccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhccCCCCC Q lcl|Aclame:pro 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRKKVNKS 313 (518) Q Consensus 235 ~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~~~~~~ 313 (518) .+. -+.|+++... +...|+|...-+...++....+-.....-|+.|.. .-++ .....-. T Consensus 161 ~~~----------evih~~~~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil-----~~~~~l~ 220 (414) T protein:vir:44 161 SQE----------DIWHVRTLTL-----DGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVL-----RTEQTLS 220 (414) T ss_pred ccc----------cEEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE-----EeCCCCC Confidence 000 1234443221 23569999988887777555444334444565443 2222 1111100 Q ss_pred ccccccCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c-hHHH Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V-KATE 390 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~-TAtE 390 (518) ..........-.+.|.+..... ..--+++..++.++....+.++++..+...+.|....|++|..++..++. . ++.+ T Consensus 221 ~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~ 300 (414) T protein:vir:44 221 DQAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEE 300 (414) T ss_pred HHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHH Confidence 0000000000001111110000 00011223467777777888999999998899999999999999875433 1 2212 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 391 IWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAM 470 (518) Q Consensus 391 i~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~ 470 (518) . ....++.+|..++..+-....... +.......+-+.+++++.+..|.+++++.+.+++++|+| T Consensus 301 ~-------------~~~~~~~~l~P~~~~ie~~ln~~L---~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~ 364 (414) T protein:vir:44 301 L-------------GLGFINYSLVPYLTRIEQRINTGL---VRKSKQGVFYAKFNAGALLRGDMKSRFEAYATGINWGIY 364 (414) T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHhhc---CCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCc Confidence 1 112233344444444433222111 111111234567777787888999999999999999999 Q ss_pred CHHHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 471 SVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 471 S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++-++.+++ ++.. +..++-+ + .-+....+.++...++ +++.+ T Consensus 365 t~NE~R~~~--gl~p~~ggD~~~--~-~~n~~~~~~~~~~~~~-~~~~~ 407 (414) T protein:vir:44 365 SPNDCRDLE--DMNPRPGGDVYL--T-PMNMTTKPSDGSKAGK-QKDNA 407 (414) T ss_pred CHHHHHHHh--CCCCCCCcceec--c-cccccccCCccccCCC-CCCCC Confidence 999987765 2322 1111111 0 0111111111111111 11111 No 141 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=97.73 E-value=2.4e-05 Score=45.89 Aligned_cols=377 Identities=11% Similarity=0.036 Sum_probs=152.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccc-cceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVH-DKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~l~~~i~~~~A~l 79 (518) ||+++-+. | ........ ..... ......+|+....+... +..++..--..+++.+|+- T Consensus 1 Mg~~~~~~-----~-~~~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ 59 (385) T protein:vir:10 1 MGLLTPRN-----F-NKRKAKNM----------VYPSN-----PAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASD 59 (385) T ss_pred Cccccchh-----c-cccccccc----------ccccc-----hhhhhhhccccCccccCHHHhhccHHHHHHHHHHHHH Confidence 99886421 1 11110000 00000 00111222221111111 2223333344567777777 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHH-HHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVE-LAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e-~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g 158 (518) +.+-|..+. +......+++ -..+--...+.+.+. ..+-.|.+++.+..+. +.+++++..... T Consensus 60 ia~~p~~v~--------~~~~~~ll~~-PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~----~~~~p~~~~~v~---- 122 (385) T protein:vir:10 60 VASAHFKTE--------NTATLNRLES-PSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN----LEHIPNSDVQIN---- 122 (385) T ss_pred HhhCceeee--------ccchhhhhhc-CCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc----eeEeecCCceEE---- Confidence 765554432 1111222221 001111223334433 4445577776653321 222222211111 Q ss_pred cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccc Q lcl|Aclame:pro 159 EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNH 238 (518) Q Consensus 159 ~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (518) .. ......+|+.. ...++... .+ .... T Consensus 123 ---------~~-~~~~~~~~~~~-------------------------~~~~~~~~---------~~---------~~~e 149 (385) T protein:vir:10 123 ---------YL-PGNMGIVYTVL-------------------------ESNDRPQM---------VL---------RQDQ 149 (385) T ss_pred ---------EE-EcCCceEEEEE-------------------------EcCCceEE---------EE---------cccc Confidence 01 11111122110 00000000 00 0000 Q ss_pred eeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeech--hhhccCCCCCcc Q lcl|Aclame:pro 239 SVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASE--RMFRKKVNKSTD 315 (518) Q Consensus 239 ~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~--~~l~~~~~~~~~ 315 (518) +.|++...++ ..+...|+|.+..+...|+....+-.....-|+.|. +.-++.- .+.+.. . T Consensus 150 ----------iihik~~~~~--~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e-----~ 212 (385) T protein:vir:10 150 ----------MLHFRLMPDP--QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGK-----D 212 (385) T ss_pred ----------EEEeccCCCC--cccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHH-----H Confidence 2334432111 112346999999888888766555544445566654 4333321 111000 0 Q ss_pred ccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHH-HHHHHHHHHHHHHhCCCccccccC-CccchHHHHHH Q lcl|Aclame:pro 316 KEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYR-ETMEYFAQKAVSKSGYNPATFNLG-NREVKATEIWS 393 (518) Q Consensus 316 ~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~-~~i~~~l~~i~~~~G~s~~tf~~d-~~~~TAtEi~s 393 (518) .... -..-+..+.+-+..--.-.+++..++.++....+.+++ +..+...+.|....|++|..++.. .+..+.+.+.. T Consensus 213 ~~~~-~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq 291 (385) T protein:vir:10 213 LESA-REEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQ 291 (385) T ss_pred HHHH-HHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHH Confidence 0000 00000111110000000011223466677777788875 677777889999999999999864 33333333322 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVE 473 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~ 473 (518) .+.....++.-....++.+|.. .. + ..++.+++++-+..|.+++++.+.+++++|+|+.- T Consensus 292 ~~~~~~~~l~P~~~~ie~~l~~-----------~l---~------~~~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~N 351 (385) T protein:vir:10 292 IKATYLANLNSYVNPIVDELRL-----------KM---N------APDLELDIKDMLDVDDSALINQVSNLAKSGVLGAE 351 (385) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------hh---C------CceEEeechhhhccCHHHHHHHHHHHHhCCCcCHH Confidence 2211122222222222222211 10 0 12477788888889999999999999999999998 Q ss_pred HHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 474 EKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 474 ~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) ++.+.+. +.+.++.. .+.. ++..+.. ||-+++. T Consensus 352 E~R~~~g~~p~p~~~~----~~~~------~~~~~~~-~g~~~dn 385 (385) T protein:vir:10 352 QAQFILTRSGFLPDNL----PEFK------PLTTQVK-GGDEGDN 385 (385) T ss_pred HHHHHhCCCccCCCCC----cccc------CcccccC-CCCCCCC Confidence 8766542 22222111 0000 0001111 1111111 No 142 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=97.71 E-value=2.6e-05 Score=45.71 Aligned_cols=368 Identities=12% Similarity=0.049 Sum_probs=149.9 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc-ccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-HDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~l~~~i~~~~A~l 79 (518) ||+++.. .|-+..+. ...... .......+|+....... .+..+..+--..+++.+|+- T Consensus 1 Mg~~~~~-----~~~k~~~~-----------~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ 59 (383) T protein:vir:10 1 MGLLTPK-----NFSKRNAK-----------NMVYPS-----NPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASD 59 (383) T ss_pred CCccccc-----cccccccc-----------cccccc-----chhhhhhhccCccccccchhHhhcchHHHHHHHHHHHh Confidence 9998642 01111110 000000 00011112221111111 11222222222344555555 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhc-ChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRID-NFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn-~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g 158 (518) +..-+ |++... .....+++ -..+ ....-+...+...+-.|.+++.+. .+. +.+++++.+-. T Consensus 60 ia~~~--~~~~~~------~~~~ll~~-PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~--~~~--~~~~p~~~~~v----- 121 (383) T protein:vir:10 60 VSSAH--FKTENT------ATLNRLES-PSSLIGRFSFWQGALMQLCLSGNDYIPLV--GQN--LEHIPNSDVQI----- 121 (383) T ss_pred hccCc--eeeccc------chhhhhhC-CCCCCCHHHHHHHHHHHhhhcCCeEEEEE--cCc--eeEeecCcceE----- Confidence 54433 444211 11112221 0011 112222333444445577665432 221 12222221111 Q ss_pred cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccc Q lcl|Aclame:pro 159 EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNH 238 (518) Q Consensus 159 ~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (518) . +.......+|+.. +. .++..+. + ... T Consensus 122 -----~----~~~~~~~~~~~~~------------------------~~-~~~~~~~---------~---------~~~- 148 (383) T protein:vir:10 122 -----N----YLPGNMGIVYTVL------------------------ES-NDRPKMV---------L---------RQD- 148 (383) T ss_pred -----E----EEEcCCceEEEEE------------------------Ec-CCceEEE---------E---------ccc- Confidence 0 0111111122111 00 0000000 0 000 Q ss_pred eeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeee--chhhhccCCCCCcc Q lcl|Aclame:pro 239 SVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAA--SERMFRKKVNKSTD 315 (518) Q Consensus 239 ~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v--~~~~l~~~~~~~~~ 315 (518) -+.|+++..++ -.+-..|+|.+.-+...++....+-.-...-|+.|. +.-++ +..+.+. .. T Consensus 149 ---------evih~r~~~~~--~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~-----e~ 212 (383) T protein:vir:10 149 ---------QMLHFRLMPDP--QYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG-----KD 212 (383) T ss_pred ---------ceEEeccCCCC--cccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCH-----HH Confidence 02344432111 112246999999888888876666555555566654 33222 1111100 00 Q ss_pred ccccCCCcchhheeeecCCcCC----CCCCCccceEecccccHHHHH-HHHHHHHHHHHHHhCCCccccccC-CccchHH Q lcl|Aclame:pro 316 KEEWSMNVDEDYFMQFKGTLDA----GAKLNDMIQFMQGDFRDGSYR-ETMEYFAQKAVSKSGYNPATFNLG-NREVKAT 389 (518) Q Consensus 316 ~~~~~~d~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~ir~~~~~-~~i~~~l~~i~~~~G~s~~tf~~d-~~~~TAt 389 (518) . ..-.+.+....+.... --+++..++.++.+....+++ +..+...+.|....|++|..++.. .+..+.+ T Consensus 213 ~-----~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~s 287 (383) T protein:vir:10 213 L-----ESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHS 287 (383) T ss_pred H-----HHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccc Confidence 0 0001111111111000 012234577777777788875 677777889999999999999874 3333332 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 390 EIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALA 469 (518) Q Consensus 390 Ei~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~ 469 (518) .+...+.....++.-....++..|.. .+ + ...+.+++++.+..|.+++++.+.+++++|+ T Consensus 288 n~eq~~~~~~~~l~P~~~~ie~~l~~----------~l----~------~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~ 347 (383) T protein:vir:10 288 NIDQIKATYLANLNSYVNPIVDELRL----------KM----N------APDLELDIKDMLDVDDSILINQVSNLAKSGV 347 (383) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----------hh----C------CceEEeechhhhccCHHHHHHHHHHHHhCCC Confidence 22211111122222222222222211 11 1 1247788889899999999999999999999 Q ss_pred CCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 470 MSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 470 ~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) |+..++.+.+. +.....+ . ....+ + .-..+|| T Consensus 348 ~t~nE~R~~lg~~p~~~~d----~-------~~~~~--~----~~~~~gG 380 (383) T protein:vir:10 348 LGAEQAQFILTRSGFLPDN----L-------PEFKP--L----TNETKGG 380 (383) T ss_pred cCHHHHHHHhCCCcccCCc----c-------cccCC--C----cccCCCC Confidence 99998877652 1111100 0 00000 0 0123455 No 143 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=97.64 E-value=3.4e-05 Score=45.07 Aligned_cols=391 Identities=10% Similarity=0.018 Sum_probs=159.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecC-chHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNS-GTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~l~~~i~~~~A~l 79 (518) ||++.-....= ..+.++ .+ ..+..... .| .+.....-.....++. .+- ..++.+|+- T Consensus 1 Mg~f~~~~~r~---~~~~~~--~~---~~~~~~~~----~~---------~~~~~~~~~~~~al~~~~v~-~cv~~Ia~~ 58 (416) T protein:vir:81 1 MGIFYKNEKRD---LQYNED--DL---QMMVQTLP----GF---------QGTKLRQYKDIEAIRHSDIF-TAVMMIASD 58 (416) T ss_pred CCccccccccc---ccCCCc--ch---hHHHHHhc----cc---------cccCccccchhhhhcchHHH-HHHHHHHHh Confidence 99875322110 000000 00 00000000 00 0111010011111111 111 133555555 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHh--hcCh--HHHHH-HHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeE Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALR--IDNF--DSKSV-KIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFW 152 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn~f--~~~~~-~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~ 152 (518) +..=|..+.-.+....+ ..+..+|. -|.+ ...|. ..+...+..|.+++.+..+ +|++ .+..++|+.+- T Consensus 59 iA~~p~~~~~~~~~~~~-----~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~ 133 (416) T protein:vir:81 59 LARMPIRVTVNGQINYS-----DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIE 133 (416) T ss_pred hccCceEEecCcccccc-----chHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeE Confidence 54434333211111111 11222332 1211 11233 3344455667877766554 3444 46666677666 Q ss_pred EEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 153 IDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 153 P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) +... +|++ +|+. +......... . . T Consensus 134 v~~~~~g~~----------------~~~~-------------------------~~~~~~~~~~-~-----~-------- 158 (416) T protein:vir:81 134 LKSDARGRL----------------YYFH-------------------------QRIDSNGNNI-E-----R-------- 158 (416) T ss_pred EEECCCccE----------------EEEE-------------------------EEecCCCcee-E-----E-------- Confidence 5432 1221 1110 0000000000 0 0 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhcc-ceeee--chhhhc Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR-EGEKTK-TKIAA--SERMFR 307 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~-e~~~g~-~ri~v--~~~~l~ 307 (518) .+.... +.|++.... +...|+|.+.-+...++.... ..++.. =|+.|. ++.++ |..+.+ T Consensus 159 -~~~~~e----------vihir~~~~-----d~~~G~s~i~~~~~~i~~~~~-~~~~~~~~f~ng~~~~gil~~~~~~~~ 221 (416) T protein:vir:81 159 -NVKFED----------MLDIKFYSL-----DGINGLSLLDTLSRTIESDNN-GKDFLNNFLRNGTHAGGILKMKGVLDN 221 (416) T ss_pred -EEcccc----------EEEeccCCC-----CCccccCHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcEEEEeCCCCCC Confidence 000000 223443211 234699999888887765443 344444 355544 33332 211110 Q ss_pred cCCCCCccccccCCCcchhheeeec--CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc Q lcl|Aclame:pro 308 KKVNKSTDKEEWSMNVDEDYFMQFK--GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE 385 (518) Q Consensus 308 ~~~~~~~~~~~~~~d~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~ 385 (518) . ...... ...-.+.|.+.. +.. .--+++..++.++.+.++.++.+..+...+.|....|++|..++.+... T Consensus 222 ~-----~~~~~~-~~~~~~~~~g~~nag~~-~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~ 294 (416) T protein:vir:81 222 K-----KARDRA-REEFHKSFSGTKQAGKV-VVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETAN 294 (416) T ss_pred H-----HHHHHH-HHHHHHHhcCccccCce-eecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCC Confidence 0 000000 000011111100 000 0011223466677778888999999999999999999999999875443 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) .+.++.... ...+ |..++..+......... . ....+.+.++++.-...|.+++++.+.+++ T Consensus 295 ~~~~~~~~~---~~~~-----------l~P~~~~ie~~ln~~l~---~--~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~ 355 (416) T protein:vir:81 295 MSITDANLD---YLST-----------LKPYITCVCAELNFKFN---D--EYVNREFKFDTTEIRVVDEKTQAEIDKINI 355 (416) T ss_pred ccHHHHHHH---HHHH-----------HHHHHHHHHHHHhhhcc---c--cccCceEEEechhhhccCHHHHHHHHHHHH Confidence 222222111 1122 22333322222211111 0 112356788888888889999999999999 Q ss_pred hCCCCCHHHHHHHHcCC-CCHHHHHHHHHHH-----HHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIHPK-WEDEEIQAEVKRI-----YLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~~~-~~eeea~eev~rI-----~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+|+|+.-++.+++... ..+-+. .+-.+ ..+..............-+.+|| T Consensus 356 ~~G~~T~NE~R~~~gl~p~~~gd~--~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgG 412 (416) T protein:vir:81 356 DSGKMNIDEIRQRDGLAPIPGGNG--SIHRVDLNHVNIELVDEYQMNKSRATDKKLKGG 412 (416) T ss_pred hCCCcCHHHHHHHhCCCCCCCCCc--ceEeecccccccccccccCcccccccccccCCC Confidence 99999999987766211 111111 00000 00111000111111112346777 No 144 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=97.64 E-value=3.4e-05 Score=45.07 Aligned_cols=391 Identities=10% Similarity=0.018 Sum_probs=159.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecC-chHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNS-GTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~l~~~i~~~~A~l 79 (518) ||++.-....= ..+.++ .+ ..+..... .| .+.....-.....++. .+- ..++.+|+- T Consensus 1 Mg~f~~~~~r~---~~~~~~--~~---~~~~~~~~----~~---------~~~~~~~~~~~~al~~~~v~-~cv~~Ia~~ 58 (416) T protein:vir:45 1 MGIFYKNEKRD---LQYNED--DL---QMMVQTLP----GF---------QGTKLRQYKDIEAIRHSDIF-TAVMMIASD 58 (416) T ss_pred CCccccccccc---ccCCCc--ch---hHHHHHhc----cc---------cccCccccchhhhhcchHHH-HHHHHHHHh Confidence 99875322110 000000 00 00000000 00 0111010011111111 111 133555555 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHh--hcCh--HHHHH-HHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeE Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALR--IDNF--DSKSV-KIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFW 152 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn~f--~~~~~-~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~ 152 (518) +..=|..+.-.+....+ ..+..+|. -|.+ ...|. ..+...+..|.+++.+..+ +|++ .+..++|+.+- T Consensus 59 iA~~p~~~~~~~~~~~~-----~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~ 133 (416) T protein:vir:45 59 LARMPIRVTVNGQINYS-----DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIE 133 (416) T ss_pred hccCceEEecCcccccc-----chHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeE Confidence 54434333211111111 11222332 1211 11233 3344455667877766554 3444 46666677666 Q ss_pred EEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 153 IDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 153 P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) +... +|++ +|+. +......... . . T Consensus 134 v~~~~~g~~----------------~~~~-------------------------~~~~~~~~~~-~-----~-------- 158 (416) T protein:vir:45 134 LKSDARGRL----------------YYFH-------------------------QRIDSNGNNI-E-----R-------- 158 (416) T ss_pred EEECCCccE----------------EEEE-------------------------EEecCCCcee-E-----E-------- Confidence 5432 1221 1110 0000000000 0 0 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhcc-ceeee--chhhhc Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR-EGEKTK-TKIAA--SERMFR 307 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~-e~~~g~-~ri~v--~~~~l~ 307 (518) .+.... +.|++.... +...|+|.+.-+...++.... ..++.. =|+.|. ++.++ |..+.+ T Consensus 159 -~~~~~e----------vihir~~~~-----d~~~G~s~i~~~~~~i~~~~~-~~~~~~~~f~ng~~~~gil~~~~~~~~ 221 (416) T protein:vir:45 159 -NVKFED----------MLDIKFYSL-----DGINGLSLLDTLSRTIESDNN-GKDFLNNFLRNGTHAGGILKMKGVLDN 221 (416) T ss_pred -EEcccc----------EEEeccCCC-----CCccccCHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcEEEEeCCCCCC Confidence 000000 223443211 234699999888887765443 344444 355544 33332 211110 Q ss_pred cCCCCCccccccCCCcchhheeeec--CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc Q lcl|Aclame:pro 308 KKVNKSTDKEEWSMNVDEDYFMQFK--GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE 385 (518) Q Consensus 308 ~~~~~~~~~~~~~~d~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~ 385 (518) . ...... ...-.+.|.+.. +.. .--+++..++.++.+.++.++.+..+...+.|....|++|..++.+... T Consensus 222 ~-----~~~~~~-~~~~~~~~~g~~nag~~-~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~ 294 (416) T protein:vir:45 222 K-----KARDRA-REEFHKSFSGTKQAGKV-VVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETAN 294 (416) T ss_pred H-----HHHHHH-HHHHHHHhcCccccCce-eecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCC Confidence 0 000000 000011111100 000 0011223466677778888999999999999999999999999875443 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) .+.++.... ...+ |..++..+......... . ....+.+.++++.-...|.+++++.+.+++ T Consensus 295 ~~~~~~~~~---~~~~-----------l~P~~~~ie~~ln~~l~---~--~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~ 355 (416) T protein:vir:45 295 MSITDANLD---YLST-----------LKPYITCVCAELNFKFN---D--EYVNREFKFDTTEIRVVDEKTQAEIDKINI 355 (416) T ss_pred ccHHHHHHH---HHHH-----------HHHHHHHHHHHHhhhcc---c--cccCceEEEechhhhccCHHHHHHHHHHHH Confidence 222222111 1122 22333322222211111 0 112356788888888889999999999999 Q ss_pred hCCCCCHHHHHHHHcCC-CCHHHHHHHHHHH-----HHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIHPK-WEDEEIQAEVKRI-----YLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~~~-~~eeea~eev~rI-----~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+|+|+.-++.+++... ..+-+. .+-.+ ..+..............-+.+|| T Consensus 356 ~~G~~T~NE~R~~~gl~p~~~gd~--~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgG 412 (416) T protein:vir:45 356 DSGKMNIDEIRQRDGLAPIPGGNG--SIHRVDLNHVNIELVDEYQMNKSRATDKKLKGG 412 (416) T ss_pred hCCCcCHHHHHHHhCCCCCCCCCc--ceEeecccccccccccccCcccccccccccCCC Confidence 99999999987766211 111111 00000 00111000111111112346777 No 145 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=97.64 E-value=3.4e-05 Score=45.07 Aligned_cols=411 Identities=11% Similarity=-0.010 Sum_probs=156.9 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhh-hhhhhhhhhcc-CCCCccc-----cceecCchHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWS-KDSYLTSLWAQ-GYVPTVH-----DKLMNSGTGNEIV 73 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~-~~~~~~~-----~~~~~~~l~~~i~ 73 (518) ++|-+.+. ++ ++.+-+..+..-.-... ++ ...|.+ +++.... ..+.+-.+++.|+ T Consensus 7 ~~~~~~~~---------~~------~~~~~rd~l~~~~~glg~~r---~~~~~~~g~~~~~~~~~l~~~Yr~~~ia~~iV 68 (449) T protein:vir:10 7 LAVNHALN---------DA------RMARARMGLMVPTMGLDNKR---HSAWCEYGFPELVTYENLYSLYRRGGIAHGAV 68 (449) T ss_pred HHHhhhcc---------hh------HHHHHHHHHHHHHhcCCccc---chhhhhcCCcccCCHHHHHHHHhcCchhHHHH Confidence 11111111 10 11111100000000000 00 001111 1111111 1122345799999 Q ss_pred HHHHHHHcCCcceEEeccccccc--hHH-HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCe Q lcl|Aclame:pro 74 VVAAEYISGKPLSIDVTGVNGSK--DEN-LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQ 150 (518) Q Consensus 74 ~~~A~ll~~e~~~i~v~~~~~~~--d~~-~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~ 150 (518) ++.|+-+...-+.|. .+.+..+ ++. ....+++++ .++++..+.++...+...|++++-+.+.+++.+- T Consensus 69 d~~~d~~~~~~~~i~-~g~~~~~~~~~~~~e~~~~~l~-~~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~l~------- 139 (449) T protein:vir:10 69 EKLVGKCWQTNPEII-EGDDADDSEDETSWEKKSKQVF-TNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWN------- 139 (449) T ss_pred HhhhhhhhhcCcccc-cCccccchhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCcEEEEEEecCCCCCC------- Confidence 999997766655553 3322211 111 223344433 3467777888888766777777766665554321 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) -|+-..+.+..+........ +--++.. + -....+| . -+.|+-++.. + T Consensus 140 -~Pl~~~~~i~~i~v~~~~~i-------~~~~~~~--d--p~sp~yg--~--P~~y~v~~~~-~---------------- 186 (449) T protein:vir:10 140 -LPATKGRGLQKVSVSWAGSL-------KVAEWDT--G--INSKTYG--Q--PKLWKYTERL-P---------------- 186 (449) T ss_pred -cccccCcceeeEEeeccccC-------Chhhhhc--C--CCCCCCC--C--ceEEEEeeec-c---------------- Confidence 13322233332221111000 0000000 0 0000000 0 0111100000 0 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHH-----HHHHhc----cceeee Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYM-----REGEKT----KTKIAA 301 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~-----~e~~~g----~~ri~v 301 (518) +.......-+-++ ++ .| +-. ..-|+|.+..+.+.+-.++.+-..+. +..|.- .+++-+ T Consensus 187 --g~~~~~~~iH~SR-l~-~~--~~~-------~~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~ 253 (449) T protein:vir:10 187 --NGSSRRVDIHPDR-VF-IL--GDY-------SEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDF 253 (449) T ss_pred --CCCccceeeccce-eE-ee--cCC-------CCCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh Confidence 0000000001111 11 01 000 01177888777776666655422211 111110 011110 Q ss_pred chhhhccCCCCCccccccCCCcchhhe-eeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc- Q lcl|Aclame:pro 302 SERMFRKKVNKSTDKEEWSMNVDEDYF-MQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF- 379 (518) Q Consensus 302 ~~~~l~~~~~~~~~~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf- 379 (518) .++......+...... .+....+.+ +..... ..+....++.++-.+ ......++.+++.+.-.+|++.--| T Consensus 254 -~~l~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~---~i~~~~d~~~~~~~~--sgl~d~l~~~~q~iaaa~~IP~t~L~ 326 (449) T protein:vir:10 254 -TNLASLYGVSIDELQD-KFNEVAGEINRGNDVL---MTTQGATVTPLVTSV--ADPTATYNVNLQTAAAGVDIPTRILI 326 (449) T ss_pred -hhhhHHhhCCchHHHH-HHHHHHHHHhccchhe---eecCCcceEEEeccc--CChhHHHHHHHHHHHHHhCCCeeeee Confidence 1111100000000000 011001111 111110 111222344444332 2344567778888888888886555 Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 380 NLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 380 ~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) |-+.+..++|| +.+--|.++..+|..++..|+.++..++... .+.+ +.+++|.|++--..++.++++ T Consensus 327 Gqsp~glnst~---D~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~-------~g~~---~~d~~i~f~pL~~~t~kEkAe 393 (449) T protein:vir:10 327 GNQQAERSSTE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELK-------IIDA---VAKKAVIWDDLNEQTGTEKLT 393 (449) T ss_pred ccCccccccch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-------cCCC---CCceeEEeCCCCCCCHHHHHH Confidence 55555555564 3344577777777778888888877654431 1222 236999999999999988877 Q ss_pred HHHHH-------HhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 460 TLNNM-------NSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ~~~~~-------~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ...+. ..+|.+ +-.+.+|+.+-+ ..+..... +.|......+.++- T Consensus 394 i~k~~A~a~~~~~~ag~~----------~~~~~~EiR~~~---~~~~~~~~-~~~~e~~de~~~~~ 445 (449) T protein:vir:10 394 NAKTMGEINQTMLGSGDN----------PAFSREEIRTAA---GYDNDDEE-PLGEEDGDEEDKAT 445 (449) T ss_pred HHHHHHHHHHHHHHcccc----------CCcCHHHHHHHh---cccCCCCC-CCCCCCCccccccC Confidence 65443 333311 123555554322 11111111 01111111111111 No 146 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=97.60 E-value=3.9e-05 Score=44.78 Aligned_cols=463 Identities=8% Similarity=-0.047 Sum_probs=176.5 Q ss_pred CCcCchHH-HHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMT-RFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~-~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) |-..--+. +..|.=| +.+...+..+....++..+-...+.+-......+.+..++-=+-+...++.+|+- T Consensus 1 ~~~~~~~~~~~~~~r~---------~~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Las~ 71 (522) T protein:vir:94 1 MAEREGFAAEGAKAVY---------DRLKNGRQPYETRAQNCAAVTIPSLFPKESDNSSTEYTTPWQAVGARCLNNLAAK 71 (522) T ss_pred CcccchhhHHHHHHHH---------HHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHHH Confidence 22211000 0011111 1111111112222222211111211111111222223334445577777777777 Q ss_pred HcCCc----ceEEeccccc---------cch-------HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC- Q lcl|Aclame:pro 80 ISGKP----LSIDVTGVNG---------SKD-------ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN- 138 (518) Q Consensus 80 l~~e~----~~i~v~~~~~---------~~d-------~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~- 138 (518) |++-. +=+.+...+. ... +...+.+...|..++|+..+.+++....+.|.+++-+-=+. T Consensus 72 l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~ 151 (522) T protein:vir:94 72 LMLALFPQSPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVSGNCLLYIPEPEQ 151 (522) T ss_pred HHhhcCCCCcccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeeccCC Confidence 66642 2222222110 011 11223345667789999999999999999999886432121 Q ss_pred Ce-EEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCc-eEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccc Q lcl|Aclame:pro 139 GR-PSISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNK-ADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTP 215 (518) Q Consensus 139 ~~-i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~-~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~ 215 (518) ++ ..+.+++-..|+-.-+ +|++..++.-.++....- ..+-..++-... .-+....|-+.+|+-++...+ T Consensus 152 ~~~~~~~~~pl~~y~v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~-------~p~~~v~v~~~v~~~~~~~~~- 223 (522) T protein:vir:94 152 GTYSPMRMYRLVSYVVQRDAFGNILQIVTIDKVAFSALPEDVKSQLNADDY-------EPDTELEVYTHIYRQDDEYLR- 223 (522) T ss_pred CceeeEEEEEcceEEEeeCCCcCeEEEeeeeeccHHhcchHHHHHHhcccC-------CccceEEEEEEEEeeCCceeE- Confidence 22 3466677666665433 366555443322211000 000000000000 000112233333332211100 Q ss_pred ccccccccccccccccccC-cccceeecC-CCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 216 ISAERLPEQITSYLHTNDI-QLNHSVSIG-LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREG- 292 (518) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~-~~~~~~~tg-~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~- 292 (518) .. .+.. ..+ ..+.. .| ...|+++.-.+ ...++.||+|--..+.+-++.|+..--....-. T Consensus 224 ~~---------~~~g-~~~~~~~~~--~~~~e~P~~~~Rw~-----~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~ 286 (522) T protein:vir:94 224 YE---------EVEG-IEVTGTDGS--YPLTACPYIPVRMV-----RLDGEDYGRSYCEEYLGDLNSLETITEAITKMAK 286 (522) T ss_pred Ee---------eccC-ceecccCCC--CccccCCceeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHH Confidence 00 0000 000 00000 01 11233322222 233677899999999999999998776666544 Q ss_pred HhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 293 EKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKS 372 (518) Q Consensus 293 ~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~ 372 (518) ...++...||++.+-...+- -+.....+.. +..+...+..+...-+...-...|+.+-+.|.... T Consensus 287 ~~~~p~~~v~~~g~~~~~~~--------~~~~~g~~v~-------g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af 351 (522) T protein:vir:94 287 VASKVVGLVNPNGITQPRRL--------NKAATGEFVA-------GRVEDINFLQLTKGQDFTIAKSVADAIEQRLGWAF 351 (522) T ss_pred HHhCCceeecccccccchhe--------eccCCceeec-------CCcccceeeecccccchhHHHHHHHHHHHHHHHHH Confidence 45677777765432211100 0111111211 11111111111111122233444444444444433 Q ss_pred CCCccccc-cCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCC Q lcl|Aclame:pro 373 GYNPATFN-LGNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPM 450 (518) Q Consensus 373 G~s~~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i 450 (518) =+. .+. .++..+|||||..+.+...+...-.-..+. +.|..++.-++.+..... .. +..++..+++++--++ T Consensus 352 ~~~--~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g--~l--P~~p~~~v~v~~~s~L 425 (522) T protein:vir:94 352 LLN--SAVQRNAERVTAEEIRYVAGELEATLGGVYSVQSQELQLPIVRVLMNQLQSAG--MI--PDLPKEAVEPTVSTGL 425 (522) T ss_pred hhh--hhccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--CC--CCCCcccEEeeEecHH Confidence 111 223 245568999998888776666555444433 345555555555543221 11 2233334666665333 Q ss_pred CCCH-----HHHHHHHHHHHhCC---C---CCHHHHHHHH---cC---C---CCHHHHHHHHHHHHHh---ccccCCCC- Q lcl|Aclame:pro 451 SVNL-----NELSSTLNNMNSAL---A---MSVEEKVKLI---HP---K---WEDEEIQAEVKRIYLE---NAIGEVPD- 506 (518) Q Consensus 451 ~~d~-----~~~~~~~~~~~~aG---~---~S~~~~v~~~---~~---~---~~eeea~eev~rI~~E---~~~~~~~d- 506 (518) ..-- +...+.++.+.+.+ + +....+++.+ .+ . -+++|++++.++-... ++.+.... T Consensus 426 a~~qr~~~~~~l~~~~~~ia~l~P~~~~~~id~d~~~~~~a~~~Gv~~~~ivr~~ee~~~~~~q~~~~~~~~~~~~~~~~ 505 (522) T protein:vir:94 426 EALGRGQDLEKLTQAVNMMTGLQPLSQDPDINLPTLKLRLLNALGIDTAGLLLTQDEKIQRMAEQSSQQAVVQGASAAGA 505 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHcCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2211 11111111111111 0 1223333322 11 0 1344444433331111 11110000 Q ss_pred chh--ccCcCCCCC Q lcl|Aclame:pro 507 PEA--IGGMETKGG 518 (518) Q Consensus 507 p~~--~~~~~~~gG 518 (518) .-. .+.-.+++. T Consensus 506 ~~~a~~~~~~~~~~ 519 (522) T protein:vir:94 506 NMGAAVGQGAGEDM 519 (522) T ss_pred Hhhhhhhcccchhh Confidence 000 000011111 No 147 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=97.60 E-value=4e-05 Score=44.72 Aligned_cols=392 Identities=13% Similarity=0.011 Sum_probs=163.1 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i~~~~A 77 (518) |..-+-..+ +..+ .......-.-|....+-+. ...-+...---.+++.+| T Consensus 1 m~f~~~~~~------~~~~---------------------~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia 53 (409) T protein:vir:10 1 MLFRKGFKN------QSQE---------------------ISIDDKKILEWLGINPSETYVNGKSCLKQATVFGCIRILS 53 (409) T ss_pred CcccccccC------cCCC---------------------CCCChHHHHHHhcCCcCcceechhhhhccHHHHHHHHHHH Confidence 221110000 0000 0000000011111111010 011122222223445555 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCe Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQ 150 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~ 150 (518) +-+..=|..+--. .+.. .+.....+..+|.. | ....-.+..+...+..|.+++.+..+ +|++ .+-.++|+. T Consensus 54 ~~ia~lp~~~~~~-~~~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~ 131 (409) T protein:vir:10 54 DNISKLPIKIYQK-KDGI-KRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDG 131 (409) T ss_pred HhhhhCceEEEEe-cCCe-eeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCc Confidence 5554333332111 1111 11111123333321 1 11222334455566678888777655 3443 466666666 Q ss_pred eEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 151 ~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) +-++..+ |.. ... +.+.|.. ....+.... + T Consensus 132 V~v~~~~~~~~----------~~~-------------------------~~~~y~~-~~~~g~~~~---------~---- 162 (409) T protein:vir:10 132 MKIFVDDTGLL----------NSE-------------------------NNVWYLY-TDDLGQRHK---------F---- 162 (409) T ss_pred eEEEEcCCccc----------ccc-------------------------ceEEEEE-EeCCceeEE---------e---- Confidence 6554322 110 000 1111110 000000000 0 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhcc Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRK 308 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~ 308 (518) ... =+.|+++... +...|+|.+..+...+.....+-.....-|+.|.. +-++ .. T Consensus 163 -----~~~----------evih~r~~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil-----~~ 217 (409) T protein:vir:10 163 -----MSD----------EILHFKGLTA-----DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLV-----QY 217 (409) T ss_pred -----ccc----------cEEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEE-----Ec Confidence 000 0234443322 23469999988888877755555444455666543 3232 11 Q ss_pred CCCCCccccccCCCcchhheeeec-CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c Q lcl|Aclame:pro 309 KVNKSTDKEEWSMNVDEDYFMQFK-GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V 386 (518) Q Consensus 309 ~~~~~~~~~~~~~d~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~ 386 (518) ...-........-..-.+.+.+.. ..--.-.+++..++.++.+..+.++.+..+...+.|....|++|..++..++. . T Consensus 218 ~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~ 297 (409) T protein:vir:10 218 AGDLNPEAEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATH 297 (409) T ss_pred CCCCCHHHHHHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcc Confidence 111000000000000001121110 00000011223467777777889999999999999999999999999875433 1 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) +..|- .. ...++.+|..++..+-......... .......+.+.+++++....|..++++.+.+++. T Consensus 298 ~~~e~--~~----------~~f~~~~l~P~~~~ie~~ln~kL~~--~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~ 363 (409) T protein:vir:10 298 SNITE--QN----------REFYIDTLQSILNMYELEINYKLFL--ISEIKNGFYSKFNVDTILRADIKTRYESYKEAIQ 363 (409) T ss_pred ccHHH--HH----------HHHHHHHHHHHHHHHHHHHHHhhcC--chhccCCcEEEEechhhhccCHHHHHHHHHHHHh Confidence 22121 11 1223334444444443322211110 0111223567888888888999999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+|++-++.+++. +.. +..++ + +..-+ ..+ -...+.-..+|| T Consensus 364 ~G~~T~NE~R~~lg--l~p~~ggD~-~--~~~~n---~~~-~~~~~~~~~kgG 407 (409) T protein:vir:10 364 NGFKTPNEIRELEE--DEPLEGGDV-L--LINGN---MIP-VKMAGEQYSKGG 407 (409) T ss_pred CCCcCHHHHHHHhC--CCCCCCcCe-e--eeccC---ccc-hhhccccccccC Confidence 99999999877663 221 11111 0 00001 000 011122224566 No 148 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=97.56 E-value=4.5e-05 Score=44.40 Aligned_cols=402 Identities=12% Similarity=0.040 Sum_probs=164.1 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccc---cceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVH---DKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~---~~~~~~~l~~~i~~~~A 77 (518) ||+++.++++. +.... .-...+...-+.+ .....+++-+..-+.. ...+..+---.+++.+| T Consensus 7 mg~f~r~~~~~----~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia 71 (432) T protein:vir:81 7 LGLFGQLKAMF----VPPDP----VDIGGGQTFTPVN-------ATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVS 71 (432) T ss_pred cchhhhhhhhc----ccccc----cccccccccccCc-------cchhhhcccccccCcccchHhhhccHHHHHHHHHHH Confidence 99998775543 22100 0011100000000 0000111111100110 11111111222445555 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHh--hcCh--HHHHHHH-HHHHHhhCCEEEEEEEECCeE-EEEEEcCCee Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALR--IDNF--DSKSVKI-VELAGGSGVSAVKINILNGRP-SISVHSSSQF 151 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn~f--~~~~~~~-~e~~~a~G~~~~k~~~d~~~i-~i~~v~ad~~ 151 (518) +-|-+-|+.+--...++. .+....-+..+|. -|.. ...|.+. +...+-.|.+++.+..++|++ .+-.++++.+ T Consensus 72 ~~ia~lp~~~y~~~~~g~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~~g~~~~L~~l~~~~v 150 (432) T protein:vir:81 72 QAIAAMPLTMYMRTPDGR-KEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQYLANDRL 150 (432) T ss_pred HhhhhCceeeEEecCCcc-eecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCCce Confidence 555444544322211111 1111111223332 1211 1123333 445555677777666666664 3455566655 Q ss_pred EEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 152 WIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 152 ~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) -+... +|+ .+|+ .+..+ +..+. + T Consensus 151 ~v~~~~~g~----------------~~y~-------------------------~~~~~-g~~~~---------~----- 174 (432) T protein:vir:81 151 TITTDPKGN----------------TAYR-------------------------YRRTD-GQMID---------I----- 174 (432) T ss_pred EEEECCCCc----------------EEEE-------------------------EEecC-ceEEE---------E----- Confidence 54321 121 1111 01000 00000 0 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCC Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKV 310 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~ 310 (518) ..+ -+.+++....|. -.|+|-+.-+.+.|......-.....-|+.|... ..++.... T Consensus 175 ----~~~----------~iih~r~~~~dg-----~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~----~gil~~~~ 231 (432) T protein:vir:81 175 ----PKQ----------QIWKIMGYSLDG-----ENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQ----SVYYQIDR 231 (432) T ss_pred ----ccc----------cEEEecCCCCCC-----cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ceEEecCC Confidence 000 022344322221 2488888877777665544433333445655442 11122111 Q ss_pred CCCccccccCCCcchhheeeec-CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccc--h Q lcl|Aclame:pro 311 NKSTDKEEWSMNVDEDYFMQFK-GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV--K 387 (518) Q Consensus 311 ~~~~~~~~~~~d~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~--T 387 (518) .-.... ...-.+.|.... ..--.--+++..++.++.+..+.++++..+...+.|....|++|..++..+.+. + T Consensus 232 ~l~~e~----~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~ 307 (432) T protein:vir:81 232 FLTDDQ----YDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSW 307 (432) T ss_pred CCCHHH----HHHHHHHHhhhhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccc Confidence 100000 000011111100 000000112234677777788999999999999999999999999998754432 2 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 388 ATEIWSLQDATV-RKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 388 AtEi~s~~~~t~-~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) ++-+.......+ .++.-+...++.+|..- + +.......+.+.++++.-+..|.+++++.+.++++ T Consensus 308 ~sn~eq~~~~f~~~tl~P~~~~ie~~l~~k----------L----l~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~ 373 (432) T protein:vir:81 308 GSGIESQQLGFLTMTLSPWLRRIEQSIALN----------L----LSPAERRRYFADFDTSALLRADSAARSSYYSQLVN 373 (432) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhh----------c----cCccccCceEEEeechhhhccCHHHHHHHHHHHHh Confidence 232221121111 23333333333332221 1 11111123457777777788999999999999999 Q ss_pred CCCCCHHHHHHHHcCC-CCHHHHHHHH--H--HHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPK-WEDEEIQAEV--K--RIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~~-~~eeea~eev--~--rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+|+.-++.+++... ..+....--+ . -+. +.+... .|.+.++-..... T Consensus 374 ~G~~t~NE~R~~~glpp~~g~~~~~~~~~~~~pl~-~~~~~~--~~~~~~~~~n~~~ 427 (432) T protein:vir:81 374 NGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLD-SIGLQA--SPEPASGLGNQQQ 427 (432) T ss_pred CCCCCHHHHHHHhCCCCCCCCcceEeecCcccchh-hhccCC--CCCCCCCCCCccc Confidence 9999999988776321 2211000000 0 000 000001 1111111111111 No 149 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=97.54 E-value=4.9e-05 Score=44.21 Aligned_cols=393 Identities=10% Similarity=0.025 Sum_probs=166.8 Q ss_pred CCcCch------HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHH Q lcl|Aclame:pro 1 MGVWSV------MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVV 74 (518) Q Consensus 1 ~~~~~~------~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~ 74 (518) --++|+ ++..+|.|..|.-. ....... ..+. .. ...+++.... .....+.+.---.+++ T Consensus 4 ~~~~~~~~~~~g~~~~~~~~f~~~~~-~~~~~~~-----~~~~------~~-~~~~~~~~~v--~~~~al~~~~v~~cv~ 68 (424) T protein:vir:18 4 PKYTIDLRTNNGWWARLKSWFVGGRL-VTPNQGS-----QTGP------VS-AHGYLGDSSI--NDERILQISTVWRCVS 68 (424) T ss_pred CccccccCCCCchHHHHHhhcccccc-ccccchh-----hccc------cc-cccccccccc--cHHHhhccHHHHHHHH Confidence 112221 23457888876311 1111000 0000 00 0111111111 1112222222234566 Q ss_pred HHHHHHcCCcceEEeccccccc-hHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEE Q lcl|Aclame:pro 75 VAAEYISGKPLSIDVTGVNGSK-DENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVH 146 (518) Q Consensus 75 ~~A~ll~~e~~~i~v~~~~~~~-d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v 146 (518) .+|+-+.+=|+.+-=...+... .....-.+..+|.+ | .-..-.+..+...+-.|.+++.+..+ +|++ .+..+ T Consensus 69 ~Ia~~iA~lp~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l 148 (424) T protein:vir:18 69 LISTLTACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPL 148 (424) T ss_pred HHHHhhccCceEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEe Confidence 6666665445443111111110 00011123333321 1 11122333455666678887776544 3443 45555 Q ss_pred cCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccc Q lcl|Aclame:pro 147 SSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQIT 226 (518) Q Consensus 147 ~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~ 226 (518) +++.+-+...+++ .+|+. ..+ +..+. + T Consensus 149 ~~~~v~v~~~~~~----------------~~y~~--------------------------~~~-g~~~~---------~- 175 (424) T protein:vir:18 149 QSANMDVKLVGKK----------------VVYRY--------------------------QRD-SEYAD---------F- 175 (424) T ss_pred cCcceEEEEcCCe----------------EEEEE--------------------------EeC-CeEEE---------e- Confidence 5555544322211 11110 000 00000 0 Q ss_pred cccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeee--ch Q lcl|Aclame:pro 227 SYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAA--SE 303 (518) Q Consensus 227 ~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v--~~ 303 (518) .++ -+.|+++... +...|+|.+.-+...|......-.....-|+.|. +.-++ |. T Consensus 176 --------~~~----------eVihir~~~~-----dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~ 232 (424) T protein:vir:18 176 --------SQK----------EIFHLKGFGF-----TGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGE 232 (424) T ss_pred --------ccc----------cEEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC Confidence 000 0234454322 2246999888777766553333333334456544 33332 22 Q ss_pred hhhccCCCCCccccccCCCcchhheeeecCCcCCC----CCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 304 RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAG----AKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF 379 (518) Q Consensus 304 ~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf 379 (518) .++... .. +.-.+.+....+....+ -+++..++.++....+.++++..+...+.|....|++|..+ T Consensus 233 ~~l~~e-----~~-----~~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l 302 (424) T protein:vir:18 233 KVLTEQ-----QR-----SQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLV 302 (424) T ss_pred cCCCHH-----HH-----HHHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHh Confidence 222110 00 00001111111111000 01223467777777888999999999999999999999999 Q ss_pred ccCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 380 NLGNRE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELS 458 (518) Q Consensus 380 ~~d~~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~ 458 (518) +..+++ .+++.+...... .++.+|..++..+-....... +.......+.+.+++++.+..|.++++ T Consensus 303 g~~~~~t~~~sn~eq~~~~----------f~~~tl~P~~~~ie~~ln~~L---~~~~~~~~~~~~fd~~~llr~d~~~r~ 369 (424) T protein:vir:18 303 GDVEKSTSWGSGIEQQNLG----------FLQYTLQPYISRWENSIQRWL---IPSKDVGRLHAEHNLDGLLRGDSASRA 369 (424) T ss_pred CCCCCcccccccHHHHHHH----------HHHHHHHHHHHHHHHHHHhhc---CCccccCCeEEEEechhhhccCHHHHH Confidence 874332 222222111111 223333333333322222111 111111235678888888999999999 Q ss_pred HHHHHHHhCCCCCHHHHHHHHcCCCCH-HHHHHH-----HHHHHHhccccCCCCchhccC Q lcl|Aclame:pro 459 STLNNMNSALAMSVEEKVKLIHPKWED-EEIQAE-----VKRIYLENAIGEVPDPEAIGG 512 (518) Q Consensus 459 ~~~~~~~~aG~~S~~~~v~~~~~~~~e-eea~ee-----v~rI~~E~~~~~~~dp~~~~~ 512 (518) +.+.+++.+|+|+.-++.+.+. +.. +..++- ...+.. .....+|...|+ T Consensus 370 ~~~~~~~~~G~~T~NE~R~~~g--l~pi~ggD~~~~~~n~~~l~~---~~~~~~~~~n~a 424 (424) T protein:vir:18 370 AFMKAMGESGLRTINEMRRTDN--MPPLPGGDVAMRQAQYVPITD---LGTNKEPRNNGA 424 (424) T ss_pred HHHHHHHhCCCcCHHHHHHHhC--CCCCCCcCeeeeccCccchhh---hhccCCccccCC Confidence 9999999999999999877662 222 111110 011110 011112222222 No 150 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=97.53 E-value=5e-05 Score=44.16 Aligned_cols=402 Identities=9% Similarity=0.014 Sum_probs=162.6 Q ss_pred HHHHHHHHhcCCCChhhHHhh--HHHHhhccchhhhhhhhhhhhhhhccCCCCccc---cceecCchHHHHHHHHHHHHc Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPELI--PKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVH---DKLMNSGTGNEIVVVAAEYIS 81 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~---~~~~~~~l~~~i~~~~A~ll~ 81 (518) |.++.+ ++....++.... .-|...+ ......|+|. ...+.. ..-+...---..++.+|+-|. T Consensus 1 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~-~~~g~~v~~~~al~~~~V~~~v~~Ia~~iA 67 (454) T protein:vir:93 1 MWNLLR---RTRKNQKSGRDVREAGWTSLF---------QAVAEPFAGA-WQQGVKADPEAVLSFHAVFACISLISQDIA 67 (454) T ss_pred CCCccc---cCcccccccccccchhhhhhh---------hhhhhhhcch-hhcCcccChHHhhccHHHHHHHHHHHHhhc Confidence 444432 222221110000 0010000 0011112221 111111 111211111224555555554 Q ss_pred CCcceEEeccccccchHHHHHHHHHHHhhcCh----HHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEE Q lcl|Aclame:pro 82 GKPLSIDVTGVNGSKDENLTKQLKEALRIDNF----DSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDF 155 (518) Q Consensus 82 ~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f----~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~ 155 (518) +=|..+--...+....+.-.-.+..++..-+- ..-.+..+...+..|.+++.+..+ +|++ .+-.++|+.+-+.. T Consensus 68 ~lp~~~~~~~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~ 147 (454) T protein:vir:93 68 KMRLRLMQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLV 147 (454) T ss_pred cCceEEEEeccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEE Confidence 44544421111111111111122233322211 123334445666778888877665 3554 46666666665543 Q ss_pred Ec-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccC Q lcl|Aclame:pro 156 KN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) Q Consensus 156 ~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (518) .+ |+ .+|+.. .. ...+. ... . .+ T Consensus 148 ~~~g~----------------~~y~~~-~~-----------------------~~~~~---~~~------~-------~~ 171 (454) T protein:vir:93 148 ADDGE----------------VFYRIT-PD-----------------------RNCGI---TEA------V-------TV 171 (454) T ss_pred cCCCc----------------EEEEEE-ec-----------------------ccccc---cee------E-------Ee Confidence 22 21 111110 00 00000 000 0 00 Q ss_pred cccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhccCCCCC Q lcl|Aclame:pro 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRKKVNKS 313 (518) Q Consensus 235 ~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~~~~~~ 313 (518) ... -+.|++... ..+..+|+|.+..+...+.....+-.....-|+.|-. .-++ .....-. T Consensus 172 ~~~----------eViH~k~~~----~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil-----~~~~~l~ 232 (454) T protein:vir:93 172 PAR----------EVIHDRFNC----FFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVI-----EIPGSIT 232 (454) T ss_pred cCc----------ceEEeccCC----CCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE-----ecCCCCC Confidence 000 123444211 1233469999988888777554444444444566443 2222 1111100 Q ss_pred ccccccCCCcchhheeeecCCcCCC----CCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccc-hH Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFKGTLDAG----AKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV-KA 388 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~-TA 388 (518) ... ...-.+.|....+....+ -+++..++.++..-.+.++++..+...+.|....|++|..++..++.. +. T Consensus 233 ~e~----~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn 308 (454) T protein:vir:93 233 EEN----AKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDN 308 (454) T ss_pred HHH----HHHHHHHHHHHhcccccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcchh Confidence 000 000011111111111111 122335667777778889999998888999999999999998654331 11 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 389 TEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSAL 468 (518) Q Consensus 389 tEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG 468 (518) .|- .. +..++.+|..++..+-....... .. ...+.+.+++++.+..|.+++++.+.+++++| T Consensus 309 ~e~--~~----------~~f~~~~l~P~~~~ie~~ln~~L---~~---~~~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G 370 (454) T protein:vir:93 309 VEA--LE----------QQYYSQCLQTLIESIELLLDEAL---ET---GENESTEFDVTTLLRMDSERRMKTLGDAVKNT 370 (454) T ss_pred HHH--HH----------HHHHHHHHHHHHHHHHHHHHHhh---cC---CCCcEEEeechhhhccCHHHHHHHHHHHHhCC Confidence 111 11 11222333333333322211111 11 12345778888888899999999999999999 Q ss_pred CCCHHHHHHHHcCC-CCH-HHH--HH---HHHHHHHhccccCCCCch------hccCcCCCCC Q lcl|Aclame:pro 469 AMSVEEKVKLIHPK-WED-EEI--QA---EVKRIYLENAIGEVPDPE------AIGGMETKGG 518 (518) Q Consensus 469 ~~S~~~~v~~~~~~-~~e-eea--~e---ev~rI~~E~~~~~~~dp~------~~~~~~~~gG 518 (518) +|+.-++.+++... ... ++. .. -+..+.+.+....++.+. ....-++++| T Consensus 371 ~~T~NE~R~~~gl~pi~ggD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 433 (454) T protein:vir:93 371 LLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGN 433 (454) T ss_pred CcCHHHHHHHhCCCCCCCCCeeeeccCccchHhhhccCcccCCCCCCccCCCCCCCCCCCCCC Confidence 99999987766321 111 000 00 011111111100000000 0000112222 No 151 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=97.53 E-value=5.1e-05 Score=44.14 Aligned_cols=401 Identities=10% Similarity=0.025 Sum_probs=162.6 Q ss_pred HHHhcCCCChhhHHhhHHHHh------hccchh-----hhh--hhhhhhhhhhccCCCCccccce----ecCchHH--HH Q lcl|Aclame:pro 12 KGWLNGKPNGSEPELIPKYLP------LVPDNQ-----KEW--SKDSYLTSLWAQGYVPTVHDKL----MNSGTGN--EI 72 (518) Q Consensus 12 ~~w~~g~p~~~e~~~~~~~~~------~~~~~~-----~~~--~~~~~~~~~w~~~~~~~~~~~~----~~~~l~~--~i 72 (518) -+||. ||-. -..++++. ...+-+ +.. ........+..-+-..+..-.. -.+..+. .. T Consensus 1 ~~~~~--~~~~--~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~c 76 (441) T protein:vir:79 1 MHWYN--TDCY--FVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTA 76 (441) T ss_pred Ccccc--Cccc--cccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHH Confidence 45663 3211 11111110 000001 100 0000000100000000000000 0122222 23 Q ss_pred HHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHh--hcCh---HHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEE Q lcl|Aclame:pro 73 VVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALR--IDNF---DSKSVKIVELAGGSGVSAVKINIL-NGRP-SISV 145 (518) Q Consensus 73 ~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn~f---~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~ 145 (518) ++.+|+-|.+=|..+.-.+.... +. .+-.+|. -|.+ ..-.+..+...+..|.+++.+..+ .|++ .+-. T Consensus 77 v~~Ia~~iA~lp~~~~~~~~~~~-~~----~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~ 151 (441) T protein:vir:79 77 VMMIASDLARMPIRVTVNGQINY-SD----RIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTF 151 (441) T ss_pred HHHHHHhhccCceeeecCccccc-cc----hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEE Confidence 45555555444443321111111 11 1222232 1211 122334444566668887776654 3554 4667 Q ss_pred EcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQ 224 (518) Q Consensus 146 v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~ 224 (518) ++++.+-+... +|+ +|+.... .... +..+. . T Consensus 152 i~~~~v~v~~d~~g~-----------------~~~~~~~----------------------~~~~-~~~~~-------~- 183 (441) T protein:vir:79 152 RKTSEIELKSDARGR-----------------LYYFHQR----------------------IDSN-GNNIE-------R- 183 (441) T ss_pred EcCceeEEEECCCcc-----------------EEEEEEE----------------------eccC-CceeE-------E- Confidence 77777766432 121 1111000 0000 00000 0 Q ss_pred cccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhcc-ceeeec Q lcl|Aclame:pro 225 ITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMRE-GEKTK-TKIAAS 302 (518) Q Consensus 225 ~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e-~~~g~-~ri~v~ 302 (518) .+.... +.|++.... +...|+|.+.-+...+. ++.+..++... |+.|. ++-++ T Consensus 184 --------~~~~~d----------vih~k~~~~-----dg~~G~spl~~~~~~i~-~~~~~~~~~~~~f~ng~~p~gil- 238 (441) T protein:vir:79 184 --------NVKFED----------MLDIKFYSL-----DGINGLSLLDTLSRTIE-SDNNGKDFLNNFLRNGTHAGGIL- 238 (441) T ss_pred --------EEcccc----------EEEeccCCC-----CCccccCHHHHHHHHHH-HHHHHHHHHHHHHhccCCCcEEE- Confidence 000000 123343211 22359999888888776 44444555544 45544 33332 Q ss_pred hhhhccCCCCCccccc-cCCCcchhheeeec--CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 303 ERMFRKKVNKSTDKEE-WSMNVDEDYFMQFK--GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF 379 (518) Q Consensus 303 ~~~l~~~~~~~~~~~~-~~~d~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf 379 (518) .....-.+.... .....-...|.+.. +.. .--+++..++.++.+..+.++++..+...+.|....|++|..+ T Consensus 239 ----~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~-~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l 313 (441) T protein:vir:79 239 ----KMKGVLDNKKARDRAREEFHKSFSGTKQAGKV-VVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKF 313 (441) T ss_pred ----EcCCCCCCHHHHHHHHHHHHHHhcCccccCcc-eecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHc Confidence 111110000000 00000011111110 000 0011223467777788888999999999999999999999999 Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 380 NLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 380 ~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) +.+...-+.++.... ...|+.-....++.+|...+ . . ....+.+.++++..+..|.+++++ T Consensus 314 g~~~~~~s~~q~~~~---~~~tl~P~~~~ie~eln~kl----------~----~--~~~~~~~~fd~~~llr~D~~~~~~ 374 (441) T protein:vir:79 314 GIETANMSITDANLD---YLSTLKPYITCVCAELNFKF----------N----D--EYVNREFKFDTTEIRVVDEKTQAE 374 (441) T ss_pred CCCCCCccHHHHHHH---HHHHHHHHHHHHHHHHhhhc----------c----c--cccCceEEeechhhhccCHHHHHH Confidence 865433233332111 11233333333333322211 0 0 111346777888888889999999 Q ss_pred HHHHHHhCCCCCHHHHHHHHcCC-CCHHHHH-HHH--HHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 460 TLNNMNSALAMSVEEKVKLIHPK-WEDEEIQ-AEV--KRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ~~~~~~~aG~~S~~~~v~~~~~~-~~eeea~-eev--~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+.+++.+|+|+..++.+++.-. ..+-+.. -.+ .-+..+............+.-+.+|| T Consensus 375 ~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgG 437 (441) T protein:vir:79 375 IDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGG 437 (441) T ss_pred HHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccccccccccccccccccCCC Confidence 99999999999999987766311 1111100 000 00001111000000111122345666 No 152 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=97.53 E-value=5.1e-05 Score=44.14 Aligned_cols=401 Identities=10% Similarity=0.025 Sum_probs=162.6 Q ss_pred HHHhcCCCChhhHHhhHHHHh------hccchh-----hhh--hhhhhhhhhhccCCCCccccce----ecCchHH--HH Q lcl|Aclame:pro 12 KGWLNGKPNGSEPELIPKYLP------LVPDNQ-----KEW--SKDSYLTSLWAQGYVPTVHDKL----MNSGTGN--EI 72 (518) Q Consensus 12 ~~w~~g~p~~~e~~~~~~~~~------~~~~~~-----~~~--~~~~~~~~~w~~~~~~~~~~~~----~~~~l~~--~i 72 (518) -+||. ||-. -..++++. ...+-+ +.. ........+..-+-..+..-.. -.+..+. .. T Consensus 1 ~~~~~--~~~~--~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~c 76 (441) T protein:vir:94 1 MHWYN--TDCY--FVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTA 76 (441) T ss_pred Ccccc--Cccc--cccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHH Confidence 45663 3211 11111110 000001 100 0000000100000000000000 0122222 23 Q ss_pred HHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHh--hcCh---HHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEE Q lcl|Aclame:pro 73 VVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALR--IDNF---DSKSVKIVELAGGSGVSAVKINIL-NGRP-SISV 145 (518) Q Consensus 73 ~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn~f---~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~ 145 (518) ++.+|+-|.+=|..+.-.+.... +. .+-.+|. -|.+ ..-.+..+...+..|.+++.+..+ .|++ .+-. T Consensus 77 v~~Ia~~iA~lp~~~~~~~~~~~-~~----~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~ 151 (441) T protein:vir:94 77 VMMIASDLARMPIRVTVNGQINY-SD----RIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTF 151 (441) T ss_pred HHHHHHhhccCceeeecCccccc-cc----hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEE Confidence 45555555444443321111111 11 1222232 1211 122334444566668887776654 3554 4667 Q ss_pred EcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQ 224 (518) Q Consensus 146 v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~ 224 (518) ++++.+-+... +|+ +|+.... .... +..+. . T Consensus 152 i~~~~v~v~~d~~g~-----------------~~~~~~~----------------------~~~~-~~~~~-------~- 183 (441) T protein:vir:94 152 RKTSEIELKSDARGR-----------------LYYFHQR----------------------IDSN-GNNIE-------R- 183 (441) T ss_pred EcCceeEEEECCCcc-----------------EEEEEEE----------------------eccC-CceeE-------E- Confidence 77777766432 121 1111000 0000 00000 0 Q ss_pred cccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhcc-ceeeec Q lcl|Aclame:pro 225 ITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMRE-GEKTK-TKIAAS 302 (518) Q Consensus 225 ~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e-~~~g~-~ri~v~ 302 (518) .+.... +.|++.... +...|+|.+.-+...+. ++.+..++... |+.|. ++-++ T Consensus 184 --------~~~~~d----------vih~k~~~~-----dg~~G~spl~~~~~~i~-~~~~~~~~~~~~f~ng~~p~gil- 238 (441) T protein:vir:94 184 --------NVKFED----------MLDIKFYSL-----DGINGLSLLDTLSRTIE-SDNNGKDFLNNFLRNGTHAGGIL- 238 (441) T ss_pred --------EEcccc----------EEEeccCCC-----CCccccCHHHHHHHHHH-HHHHHHHHHHHHHhccCCCcEEE- Confidence 000000 123343211 22359999888888776 44444555544 45544 33332 Q ss_pred hhhhccCCCCCccccc-cCCCcchhheeeec--CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 303 ERMFRKKVNKSTDKEE-WSMNVDEDYFMQFK--GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF 379 (518) Q Consensus 303 ~~~l~~~~~~~~~~~~-~~~d~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf 379 (518) .....-.+.... .....-...|.+.. +.. .--+++..++.++.+..+.++++..+...+.|....|++|..+ T Consensus 239 ----~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~-~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l 313 (441) T protein:vir:94 239 ----KMKGVLDNKKARDRAREEFHKSFSGTKQAGKV-VVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKF 313 (441) T ss_pred ----EcCCCCCCHHHHHHHHHHHHHHhcCccccCcc-eecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHc Confidence 111110000000 00000011111110 000 0011223467777788888999999999999999999999999 Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 380 NLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 380 ~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) +.+...-+.++.... ...|+.-....++.+|...+ . . ....+.+.++++..+..|.+++++ T Consensus 314 g~~~~~~s~~q~~~~---~~~tl~P~~~~ie~eln~kl----------~----~--~~~~~~~~fd~~~llr~D~~~~~~ 374 (441) T protein:vir:94 314 GIETANMSITDANLD---YLSTLKPYITCVCAELNFKF----------N----D--EYVNREFKFDTTEIRVVDEKTQAE 374 (441) T ss_pred CCCCCCccHHHHHHH---HHHHHHHHHHHHHHHHhhhc----------c----c--cccCceEEeechhhhccCHHHHHH Confidence 865433233332111 11233333333333322211 0 0 111346777888888889999999 Q ss_pred HHHHHHhCCCCCHHHHHHHHcCC-CCHHHHH-HHH--HHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 460 TLNNMNSALAMSVEEKVKLIHPK-WEDEEIQ-AEV--KRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ~~~~~~~aG~~S~~~~v~~~~~~-~~eeea~-eev--~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+.+++.+|+|+..++.+++.-. ..+-+.. -.+ .-+..+............+.-+.+|| T Consensus 375 ~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgG 437 (441) T protein:vir:94 375 IDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGG 437 (441) T ss_pred HHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccccccccccccccccccCCC Confidence 99999999999999987766311 1111100 000 00001111000000111122345666 No 153 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=97.48 E-value=5.8e-05 Score=43.80 Aligned_cols=398 Identities=10% Similarity=0.027 Sum_probs=162.0 Q ss_pred HHHhcCCCChhhHHhhHHHHh----hccchh-----hhh--hhhhhhhhh-----h-ccCCCCccccceecCchHH--HH Q lcl|Aclame:pro 12 KGWLNGKPNGSEPELIPKYLP----LVPDNQ-----KEW--SKDSYLTSL-----W-AQGYVPTVHDKLMNSGTGN--EI 72 (518) Q Consensus 12 ~~w~~g~p~~~e~~~~~~~~~----~~~~~~-----~~~--~~~~~~~~~-----w-~~~~~~~~~~~~~~~~l~~--~i 72 (518) -+||. ||-.-+....+-.. ...+-+ +.. .......++ | +.......... .+..+. .. T Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--al~~~~V~ac 76 (441) T protein:vir:98 1 MHWYN--TDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIE--AIRHSDIFTA 76 (441) T ss_pred Cceec--CccceeccccccchhhhhhccccccccccccccCCCcchHHHHHHhhcccccCccccchhh--hhccHHHHHH Confidence 34663 32111111110000 000000 000 000000000 0 00000000011 122222 23 Q ss_pred HHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHh--hcC---hHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEE Q lcl|Aclame:pro 73 VVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALR--IDN---FDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISV 145 (518) Q Consensus 73 ~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn~---f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~ 145 (518) ++.+|+-+.+=|+.+.-.+.... ...+..+|. -|. -..-.+..+...+-.|.+++.+..+ +|++ .+-. T Consensus 77 v~~Ia~~iA~lpl~~~~~~~~~~-----~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~ 151 (441) T protein:vir:98 77 VMMIASDLARMPIRVTVNGQINY-----SDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTF 151 (441) T ss_pred HHHHHHhhccCceEEecCCcccc-----cchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEE Confidence 55555555544444321111111 111222232 121 1122334455566678887776554 3443 4667 Q ss_pred EcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQ 224 (518) Q Consensus 146 v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~ 224 (518) ++++.+-+... +|+ +|+...... +.+......| T Consensus 152 i~~~~v~v~~~~~g~-----------------~~~~~~~~~-----------~~~~~~~~~~------------------ 185 (441) T protein:vir:98 152 RKTSEIELKLDARGR-----------------LYYFHQRID-----------SNGNNIERNV------------------ 185 (441) T ss_pred EcCceeEEEECCCCc-----------------EEEEEEEec-----------cCcceeeEEE------------------ Confidence 77777766532 222 111100000 0000000000 Q ss_pred cccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhccc-eeee- Q lcl|Aclame:pro 225 ITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR-EGEKTKT-KIAA- 301 (518) Q Consensus 225 ~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~-e~~~g~~-ri~v- 301 (518) .+. -+.|++.... +...|+|.+.-+.+.+.... +..++.. -|+.|.. .-++ T Consensus 186 ----------~~~----------dviHir~~~~-----dg~~G~spi~~~~~~i~~~~-a~~~~~~~~f~ng~~~~gil~ 239 (441) T protein:vir:98 186 ----------KFE----------DMLDIKFYSL-----DGINGLSLLDTLSRTIESDN-NGKDFLNNFLRNGTHAGGILK 239 (441) T ss_pred ----------ccc----------cEEEeccCCC-----CCccccCHHHHHHHHHHHHH-HHHHHHHHHHhccCCCcEEEE Confidence 000 0233443211 12359999888877775443 3344444 3566543 3332 Q ss_pred -chhhhccCCCCCccccccCCCcchhheeeec--CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 302 -SERMFRKKVNKSTDKEEWSMNVDEDYFMQFK--GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPAT 378 (518) Q Consensus 302 -~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~t 378 (518) |..+.+ ....... ...-.+.|.+.. +.. .--+++..++.++....+.++++..+...+.|....|++|.. T Consensus 240 ~~~~~~~-----~e~~~~~-~~~~~~~~~G~~nag~~-~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~ 312 (441) T protein:vir:98 240 MKGVLDN-----KKARDRA-REEFHKSFSGTKQAGKV-VVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHK 312 (441) T ss_pred eCCCCCC-----HHHHHHH-HHHHHHHhcCccccCcc-eecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHH Confidence 221110 0000000 000011121110 000 001223356777778888999999999999999999999999 Q ss_pred cccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 379 FNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELS 458 (518) Q Consensus 379 f~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~ 458 (518) ++.+....+.++.... ...|+.-+...++.+|...+ .. ....+.+.++.+.-+..|.++++ T Consensus 313 lg~~~~~~s~~q~~~~---y~~tl~P~~~~ie~~ln~~L--------------~~--~~~~~~~~fd~~~llr~d~~~~~ 373 (441) T protein:vir:98 313 FGIETANMSITDANLD---YLSTLKPYITCVCAELNFKF--------------ND--EYVNREFKFDTTEIRVVDEKTQA 373 (441) T ss_pred cCCCCCCccHHHHHHH---HHHHHHHHHHHHHHHHHhhc--------------cc--cccCceEEEechhhhccCHHHHH Confidence 9875443333332111 11233333333333222111 00 11134577777788889999999 Q ss_pred HHHHHHHhCCCCCHHHHHHHHcCC-CCHHHHHHHHHH-----HHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 459 STLNNMNSALAMSVEEKVKLIHPK-WEDEEIQAEVKR-----IYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 459 ~~~~~~~~aG~~S~~~~v~~~~~~-~~eeea~eev~r-----I~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +.+.+++.+|+|++.++.+++... ...-+ +-+-. +..|............+.-+.+|| T Consensus 374 ~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd--~~~~~~~~n~~~~~~~~~~q~~~~~~~~~~~kgG 437 (441) T protein:vir:98 374 EIDKINIDSGKMNIDEIRQRDGLAPIPGGN--GSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGG 437 (441) T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCCC--cceEeecccccccccccccccccccccccccCCC Confidence 999999999999999987766211 11101 00000 000100000001111122345677 No 154 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=97.48 E-value=5.9e-05 Score=43.79 Aligned_cols=402 Identities=12% Similarity=0.038 Sum_probs=166.1 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i~~~~A 77 (518) ||+++-++.+... .+|- -+......-+.+ ...+.+.+-....+. ....+...---..++.+| T Consensus 7 ~g~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia 71 (432) T protein:vir:97 7 LGLLGQLKAMFVP---PDPV-----DIGGGQTFTPVN-------ATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVS 71 (432) T ss_pred CchhhhhHhhcCC---cccc-----ccccccccccCc-------hhhhhhcccccccCcccchHhhhcchHHHHHHHHHH Confidence 9998866555421 1221 000000000000 000111111111111 011122222223445555 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHh--hc---ChHHHHHHHHHHHHhhCCEEEEEEEECCeE-EEEEEcCCee Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALR--ID---NFDSKSVKIVELAGGSGVSAVKINILNGRP-SISVHSSSQF 151 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn---~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i-~i~~v~ad~~ 151 (518) +-|-+=|..+-....++. .+..+.-+..+|. -| .-..-++..+...+..|.+++.+..++|++ .+..++++.+ T Consensus 72 ~~ia~lp~~~y~~~~~g~-~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~~L~~l~p~~v 150 (432) T protein:vir:97 72 QAVAAMPLMMYMRTPDGR-KEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQYLANDRL 150 (432) T ss_pred HhhccCceEEEEecCCCc-ccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCcce Confidence 555444544432222211 1111112223331 11 112222334456667788888777777765 3556666666 Q ss_pred EEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 152 WIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 152 ~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) -|+.. +|+ .+|+. +.. ++..+. T Consensus 151 ~v~~~~~g~----------------~~y~~-------------------------~~~-~g~~~~--------------- 173 (432) T protein:vir:97 151 TITTDTKGN----------------TAYRY-------------------------RRT-DGQMID--------------- 173 (432) T ss_pred EEEEcCCCc----------------EEEEE-------------------------Eec-CceEEE--------------- Confidence 65421 121 11111 000 000000 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCC Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKV 310 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~ 310 (518) +..+. +.++++...+ .-.|+|.+.-+...+.-...+-....+-|+.|... ..++..+. T Consensus 174 ---~~~~~----------iih~r~~~~d-----g~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~----~gil~~~~ 231 (432) T protein:vir:97 174 ---IPRQQ----------IWKIMGYSLD-----GENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQ----SVYYQIDR 231 (432) T ss_pred ---Ecccc----------EEEecCcCCC-----CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCc----ceeEecCC Confidence 00000 2334432211 23599988877766654433333233345655442 11122211 Q ss_pred CCCccccccCCCcchhheeeec-CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccch-- Q lcl|Aclame:pro 311 NKSTDKEEWSMNVDEDYFMQFK-GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVK-- 387 (518) Q Consensus 311 ~~~~~~~~~~~d~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~T-- 387 (518) .-.... .+.-.+.|.... ..--.--+++..++.++....+.++++..+...+.|....|++|..++..+.+.+ T Consensus 232 ~l~~e~----~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~ 307 (432) T protein:vir:97 232 FLTDDQ----YDSFSKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSW 307 (432) T ss_pred CCCHHH----HHHHHHHHhhhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccc Confidence 100000 000011111110 0000001122346777777788999999999999999999999999987544322 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 388 ATEIWSLQDATV-RKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 388 AtEi~s~~~~t~-~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) ++-+.......+ .++.-....++.+|..- + +.......+.+.++++.-+..|.+++++.+.++++ T Consensus 308 ~s~~e~~~~~f~~~tl~P~~~~ie~~ln~k----------L----l~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~ 373 (432) T protein:vir:97 308 GSGIESQQLGFLTMTLSPWLRRIEQSIALN----------L----LTPAERRRYFADFDTSALLRADSAARSSYYSQLVN 373 (432) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhh----------c----cCccccCceEEEeechhhhccCHHHHHHHHHHHHh Confidence 222222221111 23333333333322210 1 11111123456677777778899999999999999 Q ss_pred CCCCCHHHHHHHHcC-CCCHHHHHHHH----HHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHP-KWEDEEIQAEV----KRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~-~~~eeea~eev----~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+|+.-++.+++.. -..+....--+ .-+..-. ....++| .++-+..+- T Consensus 374 ~G~~T~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~~-~~~~~~~--~~~~~~~~~ 427 (432) T protein:vir:97 374 NGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIG-LQASPEP--ASGLGNQQQ 427 (432) T ss_pred CCCCCHHHHHHHhCCCCCCCCcceEeecccccchhhhc-ccCCCCC--CCCCCCccc Confidence 999999998776632 12211100000 0010000 0011122 111111111 No 155 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=97.47 E-value=6.2e-05 Score=43.67 Aligned_cols=401 Identities=12% Similarity=0.036 Sum_probs=166.6 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i~~~~A 77 (518) ||+..-++.+. ...+|- .... .....+.+ ...+.+.+-....+. ....+..+---..++.+| T Consensus 7 ~~~~~~~~~~~---~~~~~~--~~~~---~~~~~~~~-------~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia 71 (432) T protein:vir:10 7 LGLLGQLKAMF---VPPDPV--DIGG---GQTFTPVN-------ATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVS 71 (432) T ss_pred cchhhhhHhhc---CCcccc--cccc---ccccccCc-------chhhhhcccccccCcccchhhhhcchHHHHHHHHHH Confidence 88877554433 222221 1000 00000000 000001000000011 011122222223445555 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHh--hcC---hHHHHHHHHHHHHhhCCEEEEEEEECCeE-EEEEEcCCee Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALR--IDN---FDSKSVKIVELAGGSGVSAVKINILNGRP-SISVHSSSQF 151 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn~---f~~~~~~~~e~~~a~G~~~~k~~~d~~~i-~i~~v~ad~~ 151 (518) +-+-+=|..+-....+.. .+....-+..+|. =|. ....++..+...+..|.+++.+...+|++ .+..++++.+ T Consensus 72 ~~ia~lp~~~y~~~~~g~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~g~~~~L~~l~~~~v 150 (432) T protein:vir:10 72 QAIAAMPLTMYMRTPDGR-KEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTDGRIESLQYLANDRL 150 (432) T ss_pred HhhhhCceeEEEecCCCc-ccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEEcCCce Confidence 555444544422222211 1111112223332 111 12223344556677788887777666664 3556666666 Q ss_pred EEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 152 WIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 152 ~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) -+... +|+ .+|+. +.. ++..+. + T Consensus 151 ~v~~~~~g~----------------~~y~~-------------------------~~~-~g~~~~---------~----- 174 (432) T protein:vir:10 151 TITTDTKGN----------------TAYRY-------------------------RRT-DGQMID---------I----- 174 (432) T ss_pred EEEEcCCCc----------------EEEEE-------------------------Eec-CceEEE---------E----- Confidence 65421 121 11111 000 000000 0 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhccceeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMRE-GEKTKTKIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e-~~~g~~ri~v~~~~l~~~ 309 (518) ..+ -+.++++...| .-.|+|.+.-+...+..... ..++... |+.|...- .++... T Consensus 175 ----~~~----------~iih~~~~~~d-----g~~G~spi~~~~~~i~~~~~-~~~~~~~~f~ng~~~~----gil~~~ 230 (432) T protein:vir:10 175 ----PKQ----------QIWKIMGYSLD-----GENGLSAIRYGAQIFGTAIA-AEAQAARAFRNGQLQS----VYYQID 230 (432) T ss_pred ----cCc----------cEEEecCCCCC-----CcccccHHHHHHHHHHHHHH-HHHHHHHHHhcCCCcc----eEEecC Confidence 000 02334433222 23589988877776655433 3333333 45544322 222221 Q ss_pred CCCCccccccCCCcchhheeeecC-CcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccc-- Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKG-TLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV-- 386 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~-- 386 (518) ..-.... .+.-.+.|..... .--.--+++..++.++.+..+.++++..+...+.|....|++|..++..+.+. T Consensus 231 ~~l~~e~----~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~ 306 (432) T protein:vir:10 231 RFLTDDQ----YDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTS 306 (432) T ss_pred CCCCHHH----HHHHHHHHhhhhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCccc Confidence 1100000 0000111111100 00000112234677777888899999999999999999999999998754432 Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 387 KATEIWSLQDATV-RKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 387 TAtEi~s~~~~t~-~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) +++-+.......+ .|+.-....++.+|..- + +.......+.+.++.+..+..|.+++++.+.+++ T Consensus 307 ~~sn~e~~~~~f~~~tl~P~~~~ie~~ln~k----------L----~~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~ 372 (432) T protein:vir:10 307 WGSGIESQQLGFLSMTLSPWLRRIEQSIALN----------L----LSPAERRRYFADFDTSALLRADSAARSSYYSQLV 372 (432) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhh----------h----cCccccCceEEEeechhhhccCHHHHHHHHHHHH Confidence 2222222222222 23333333333333221 1 1111112345666666777889999999999999 Q ss_pred hCCCCCHHHHHHHHcC-CCCHHHHHHHH----HHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIHP-KWEDEEIQAEV----KRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~~-~~~eeea~eev----~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++|+|+.-++.+++.. -..+....--+ .-+.. -+....++|. ++-+..+. T Consensus 373 ~~G~~T~NE~R~~~glppi~g~~~~~~~~~~~~pl~~-~~~~~~~~~~--~~~~~~~~ 427 (432) T protein:vir:10 373 NNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDS-IGLQASPEPA--SGLGNQQQ 427 (432) T ss_pred hCCCCCHHHHHHHhCCCCCCCCcceEeecCcccchhh-hcccCCCCCC--CCCCCccc Confidence 9999999998877632 12211100000 00110 0011112221 11111111 No 156 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=97.46 E-value=6.3e-05 Score=43.63 Aligned_cols=458 Identities=10% Similarity=-0.014 Sum_probs=171.1 Q ss_pred chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhh--hhccCCCCccccceecCchHHHHHHHHHHHHcC Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTS--LWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISG 82 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~ 82 (518) |.+++.....- ..+..+....++..+-...+. +.+....-+....++-=+.+...++.+|+-|.+ T Consensus 1 m~~~~r~~~L~-------------~~R~~~e~~w~e~~~~tlP~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~ 67 (522) T protein:vir:10 1 MKARERYNQLT-------------TARQMFLDKAVECSELTLPYLIDDDISSRPNHKSLTVPWQSVGAKCCVTLAAKLML 67 (522) T ss_pred CchHHHHHHHH-------------HHhhHHHHHHHHHHHHhhhcccCCCCCCCcccccccccccchHHHHHHHHHHHHHH Confidence 66665443221 111111122122111111111 111111111111222223456666666666554 Q ss_pred Cc-----ceEEeccccc-----cch---HHHHH-------HHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEE Q lcl|Aclame:pro 83 KP-----LSIDVTGVNG-----SKD---ENLTK-------QLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPS 142 (518) Q Consensus 83 e~-----~~i~v~~~~~-----~~d---~~~~~-------~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~ 142 (518) -. +=+.+...+. .+. ..+++ .+...+..++|+..+.+++....+.|.+++ |.+.+.+ T Consensus 68 ~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--y~~~~~~- 144 (522) T protein:vir:10 68 AVLPPQTSFFKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASNDRVAVHQALKHLIVGGNALI--FMGKDGL- 144 (522) T ss_pred hhcCCCCccccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCceeE--EEcCCCc- Confidence 42 2233332221 010 11222 345568889999999999999999999885 5665543 Q ss_pred EEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccc Q lcl|Aclame:pro 143 ISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERL 221 (518) Q Consensus 143 i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~ 221 (518) ..++-..|+-.-+ +|++..+++-..++...-..-|- +-............+....|-+.+|.-.+...... T Consensus 145 -~~~pl~~y~v~~d~~G~vd~i~r~~~~t~~ql~~~fg--~~~~~~~~~~~~~~~~~v~v~~~v~p~~~~~~~~~----- 216 (522) T protein:vir:10 145 -KTFPLTRYVINRDGDGNVLEIVTKELISRKVLDIELP--EPKPNTGIDESSTTNDDVTIYTYVKLDKSSGRWVW----- 216 (522) T ss_pred -eEEEcceEEEeeCCCCCeeEEEeeeeccHHHHHHhcc--hhccchhhhcccCCCCceEEEEEEEeeccCCceEE----- Confidence 3455555555432 36555544333222100000000 00000000000000111223333332211100000 Q ss_pred ccccccccccccCcccceeecCCC-cceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-Hhcccee Q lcl|Aclame:pro 222 PEQITSYLHTNDIQLNHSVSIGLK-SMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREG-EKTKTKI 299 (518) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~tg~~-~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~-~~g~~ri 299 (518) ...+. ..+.....-..|.. .|+++.--+ ...++.||+|--..+.+-++.|+..--+...-. ...++.. T Consensus 217 ---~~~~~--~~~~~~~~s~~g~~~~P~~~~Rw~-----~~~ge~YGrgp~~~~l~D~k~L~~l~~~~~~~~~~a~~p~~ 286 (522) T protein:vir:10 217 ---HQEAF--DKIIPDSRSTAPKNASPWLPLRFN-----TVDGEDYGRGRVEEFLGDLKSLDGLSQSLIEGAAAASKVVF 286 (522) T ss_pred ---EEccC--CccccccccccccccCCceeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCce Confidence 00000 00000000001111 122222111 234677899999999999999988755555433 4566777 Q ss_pred eechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEec--ccccHHHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 300 AASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQ--GDFRDGSYRETMEYFAQKAVSKSGYNPA 377 (518) Q Consensus 300 ~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~ir~~~~~~~i~~~l~~i~~~~G~s~~ 377 (518) .|+++-+....+ ..+.....+.. +..+...+..+. .++.+ ..+.++.+-+.|....=+ T Consensus 287 lv~~~~~~~~~~--------l~~~~~~~~v~-------g~~~~v~~~~~~~~~d~~~--~~~~i~~~~~ri~~aFl~--- 346 (522) T protein:vir:10 287 LVSPSSTTKPAT--------IAKAGNGAIVQ-------GRPEDVAVIQVGKTADFST--AANMATAIEKRLLEAFLV--- 346 (522) T ss_pred eecccccccccc--------ccCCCCcceec-------CCCccceeecccccccchH--HHHHHHHHHHHHHHHHhh--- Confidence 775443321111 01111112211 111111111111 23332 233344444444332201 Q ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCCcCCceee-EEEeCCCCCCCH- Q lcl|Aclame:pro 378 TFNLGNREVKATEIWSLQDATVRKIEKKKRLI-QNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRV-IIEFPDPMSVNL- 454 (518) Q Consensus 378 tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~-~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v-~v~f~D~i~~d~- 454 (518) .-.-++..+|||||..+.+...+...-.-..+ .+.|.-++.-++.+..... .....+.+-+.+ .|++-..+.... T Consensus 347 ~~~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g--~lP~~p~~~~~~~~v~~is~Laraq~ 424 (522) T protein:vir:10 347 MNVRNAERVTAEEVRLTQLELEQQLGGIFSLLVIEFLIPYLNRTLLVLQRSN--QIPKLPKDIVRPTIVAGVNALGRGQD 424 (522) T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCccccccccccchhHHHHHHH Confidence 00235566899999888877766655544444 3445556666666654321 111122111111 122222221110 Q ss_pred -HHHHHHHHHHHh-CC------CCCHHHHHHHH---cC----C--CCHHHHHHHHHHHHHhccccCCCCc-h-hccCcCC Q lcl|Aclame:pro 455 -NELSSTLNNMNS-AL------AMSVEEKVKLI---HP----K--WEDEEIQAEVKRIYLENAIGEVPDP-E-AIGGMET 515 (518) Q Consensus 455 -~~~~~~~~~~~~-aG------~~S~~~~v~~~---~~----~--~~eeea~eev~rI~~E~~~~~~~dp-~-~~~~~~~ 515 (518) +...+..+.+-+ +| .+-...+++.+ .+ . -++|+++++.+.-++.+........ . ..+..-. T Consensus 425 ~~~l~~~~~~i~~~~~p~~~~~~id~d~~~~~~a~~~Gvp~~~ivrt~eev~~~~q~~q~~~~~~~~~~~a~~~~~~~~~ 504 (522) T protein:vir:10 425 RESLTAFVGTIAQTLGPEALMQYLNPLEAIKRLAAAQGIDVLNLVKTEQQLAEEQQAAQQQAAQQSLVDQAGQMTGSPLM 504 (522) T ss_pred HHHHHHHHHHHHHhhCchhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc Confidence 111111111111 11 12233334333 11 1 1555544433332222111100000 0 0000001 Q ss_pred CC-----C Q lcl|Aclame:pro 516 KG-----G 518 (518) Q Consensus 516 ~g-----G 518 (518) .+ | T Consensus 505 ~~~~~~~~ 512 (522) T protein:vir:10 505 DPTKNPQL 512 (522) T ss_pred CccccHHH Confidence 11 1 No 157 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=97.44 E-value=6.7e-05 Score=43.46 Aligned_cols=378 Identities=10% Similarity=-0.024 Sum_probs=151.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc-ccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-HDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~l~~~i~~~~A~l 79 (518) ||+..-.... + ++-.- ..+.| ...+++....... .+..++.+---.+++.+|+- T Consensus 1 M~~f~~~~~~---~-~~~~~-----~~~~~----------------~~~~~~~~~~~~v~~~~al~~~~V~~~v~~ia~~ 55 (397) T protein:vir:38 1 MPLLKLNKSH---S-QGFSL-----NDPDW----------------VNFLTGGEAQKYVSADTALKNSDIFSLIMQLSGD 55 (397) T ss_pred Ccchhhhhcc---c-CcccC-----Cchhh----------------hhhhcCCcCCceechHHhhccHHHHHHHHHHHHH Confidence 7665422111 0 00000 00011 1111111100001 11112222222245555555 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC-CeE-EEEEEcCCeeEEEEE- Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN-GRP-SISVHSSSQFWIDFK- 156 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i-~i~~v~ad~~~P~~~- 156 (518) +..=| +.+ ++......+.+-=..-.....++..+...+..|.+++.+..+. |++ .+..++|+.+-+... T Consensus 56 ia~~p--~~~------~~~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~ 127 (397) T protein:vir:38 56 LAMVR--YTS------ESDRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQ 127 (397) T ss_pred HhhCc--ccc------cccHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcC Confidence 53322 222 1222222111100011122233344445666687777665553 443 566667776655421 Q ss_pred cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcc Q lcl|Aclame:pro 157 NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQL 236 (518) Q Consensus 157 ~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 236 (518) +|. .+++...+- + ...+..+ . +.. T Consensus 128 ~~~----------------~~~y~~~~~------------------~----~~~~~~~---------~---------~~~ 151 (397) T protein:vir:38 128 DGS----------------GLIYNINFD------------------E----PAIGYME---------N---------VPA 151 (397) T ss_pred CCc----------------eEEEEEEec------------------c----cccccee---------E---------ecC Confidence 221 111110000 0 0000000 0 000 Q ss_pred cceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhccCCCCCcc Q lcl|Aclame:pro 237 NHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRKKVNKSTD 315 (518) Q Consensus 237 ~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~~~~~~~~ 315 (518) . -+.|++....+ +..+|+|.+..+...+.....+-.-...-|+.|.. ..++. ........ T Consensus 152 ~----------eiih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~-----~~~~~~~e 212 (397) T protein:vir:38 152 A----------DVIHIRLLSKN----GGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLT-----IQKGGLLD 212 (397) T ss_pred c----------cEEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEE-----eCCCCCHH Confidence 0 03344433222 22369999988888886654444444444565443 32221 11110000 Q ss_pred ccccCCCcchhheeeecCCcCC----CCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHH Q lcl|Aclame:pro 316 KEEWSMNVDEDYFMQFKGTLDA----GAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEI 391 (518) Q Consensus 316 ~~~~~~d~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi 391 (518) ... ...+.+....+.... -.+.+..++.++....+.++.+..+...+.|....|++|..++..+...++.| T Consensus 213 ~~~----~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~e- 287 (397) T protein:vir:38 213 AET----RIARSKEISKQIHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQSSIT- 287 (397) T ss_pred HHH----HHHHHHHHHhcccccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHH- Confidence 000 000001111110000 01233456677777788999999999999999999999999987544333322 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMS 471 (518) Q Consensus 392 ~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S 471 (518) ..+. .+..+|..++..+........ .. +.+. ++...+-.|.+++++.+.+++.+|+|+ T Consensus 288 -~~~~-----------~~~~~l~P~~~~ie~~ln~~l---~~-----~~~~--~~~~~~~~d~~~~~~~~~~~~~~G~~t 345 (397) T protein:vir:38 288 -QISG-----------QYAKSLNRYVQAIVGELNDKL---HA-----NISA--NIRFAIDAMGDQYASTISSSVKGGTIA 345 (397) T ss_pred -HHHH-----------HHHHHHHHHHHHHHHHHHHhc---cC-----hhcc--cccccccCCHHHHHHHHHHHHhCCCcC Confidence 1111 112233333333322211111 01 1122 233345678899999999999999999 Q ss_pred HHHHHHHHc-CCCC-HHHHHHHHHHHHHhccccCCCCchhcc-----CcCCCCC Q lcl|Aclame:pro 472 VEEKVKLIH-PKWE-DEEIQAEVKRIYLENAIGEVPDPEAIG-----GMETKGG 518 (518) Q Consensus 472 ~~~~v~~~~-~~~~-eeea~eev~rI~~E~~~~~~~dp~~~~-----~~~~~gG 518 (518) ..++.+.+. +... .+...-+. .........+...| .-+..+| T Consensus 346 ~nE~R~~lg~~p~~~~d~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~e~~~ 394 (397) T protein:vir:38 346 GNQARFILQNSGYLAKDLPDPEK-----EPQQAIQLIQQEGGENDGNNSDERGS 394 (397) T ss_pred HHHHHHHhCCCCCCCCccccccc-----cccccccccccccCCCCCCCCCCCCC Confidence 999877652 1111 11100000 00000000000000 0011111 No 158 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=97.42 E-value=7.2e-05 Score=43.30 Aligned_cols=466 Identities=8% Similarity=-0.024 Sum_probs=174.2 Q ss_pred CCcC---chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVW---SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~---~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) |-=+ -.=.+.+|.=| +.+...+..+....++..+-...+.+=......+.+..++-=+-+...++.+| T Consensus 1 ~~~~~~~~~~~~~~~~r~---------~~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~La 71 (543) T protein:vir:88 1 MAETKREGLAEEGAKAVY---------ERLKNDRVPYETRAENCAKVTIPSLFPKDSDNSSTDYTTPWQAVGARGLNNLS 71 (543) T ss_pred CcccccCcchHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHhccccCCCCCCcccccccccccchHHHHHHHHH Confidence 1110 00011111111 11111122222222222222222211111111222222232234566666666 Q ss_pred HHHcCC----cceEEecccccc---------ch-------HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE Q lcl|Aclame:pro 78 EYISGK----PLSIDVTGVNGS---------KD-------ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL 137 (518) Q Consensus 78 ~ll~~e----~~~i~v~~~~~~---------~d-------~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d 137 (518) +-|++- .+=+.+...+.. +- +...+.+...+..++|+..+.++.....+.|.+++-.--+ T Consensus 72 a~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~ly~~~~ 151 (543) T protein:vir:88 72 AKVMLALFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEANSYRVTLFELIRQLALAGTALIYLPPP 151 (543) T ss_pred HHHHHhhcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeccC Confidence 665543 222333222111 00 1122345567778999999999999999999998643222 Q ss_pred CCe-EE---EEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccc---eeeeeeccceEEEEEEEecc Q lcl|Aclame:pro 138 NGR-PS---ISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQW---DKEGKKLSGGFVTYSVIKID 209 (518) Q Consensus 138 ~~~-i~---i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~---~~~~~~~~~~~I~n~ly~~~ 209 (518) .++ ++ +..++-..|+-..+ +|++..++....+.... |.-+ +... ......+....|.|.+|.-. T Consensus 152 ~~~~~~~~~~~~~pl~~y~v~~d~~G~v~~i~r~~~~~~~~-------l~~~-~~~~v~~~~~~~p~~~~~v~~~V~pr~ 223 (543) T protein:vir:88 152 DASSNSYNPMKLYTLHNHVVQRDAFGNVLQIVTLDKVAYAA-------LPED-VRNSLSGGQEYKPEQELEVYTHIYIDD 223 (543) T ss_pred ccccceecceEEeEcceEEEeeCCCCCeeeeeeeeeccHHH-------HhHH-hhHHHHHHhhcCCccceEEEEEEEeec Confidence 222 11 33333344333322 35554444332221100 0000 0000 00000111233444444322 Q ss_pred CCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 210 GDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYM 289 (518) Q Consensus 210 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~ 289 (518) +...... ......+... ..+..... ...|+++.--+ ...++.||+|--..+.+-++.||..--+.. T Consensus 224 ~~~~~~~-----~~~~~~~~v~--~~~~~~~~--~e~P~i~~Rw~-----~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l 289 (543) T protein:vir:88 224 ESGDFLS-----YQEIEGVEVD--GSDGQYPQ--DALPWIAVRWT-----KRDGEHYGRSHVEEYLGDLNSLESLNEAMI 289 (543) T ss_pred CCCcccc-----cccccCeeee--cCCCcccc--ccCCceeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHHH Confidence 1110000 0001110000 00000000 01223222112 234677899999999999999998766555 Q ss_pred HHH-HhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 290 REG-EKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKA 368 (518) Q Consensus 290 ~e~-~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i 368 (518) .-. ...++...||++......+ ..+.....+.. +..+...+..+...-+.....+.|+.+-+.| T Consensus 290 ~~~~~~~~pp~~v~~~g~~~~~~--------~~~~~~g~~v~-------g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI 354 (543) T protein:vir:88 290 KFAMISSKVVGLVNPNGITQVRR--------LVKAQTGDFVA-------GRKADIEFLQLEKTADFTVAKSVADAIEARL 354 (543) T ss_pred HHHHHHhcCceeeccccccchhh--------cccCCCceeec-------CCCCcceeeecccccchhHHHHHHHHHHHHH Confidence 544 4566777776553311111 00111112211 1111111222222223334555555555555 Q ss_pred HHHhCCCccccc-cCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEe Q lcl|Aclame:pro 369 VSKSGYNPATFN-LGNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEF 446 (518) Q Consensus 369 ~~~~G~s~~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f 446 (518) ....=+. .+. -++..+|||||..+.+...+...-.-..+. +.|..++.-++.+..... ... ..++..+++++ T Consensus 355 ~~af~~~--~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g--~lP--~~p~~~v~~~~ 428 (543) T protein:vir:88 355 SYVFMLN--SAVQRSGERVTAEEIRYVASELEDTLGGVYSILSQELQLPIVRVLLNQLQATQ--QIP--NLPQEAVEPTV 428 (543) T ss_pred HHHHhhh--hhccCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC--CCchhceeeeE Confidence 4333111 122 245568999998888776666555444433 345555555555543221 122 22233455554 Q ss_pred CCCCCC-CHHHHHHHHHHHHh-CCC---------CCHHHHHHHHc--CCC-------CHHHHHHHHHHHHHhccccCC-- Q lcl|Aclame:pro 447 PDPMSV-NLNELSSTLNNMNS-ALA---------MSVEEKVKLIH--PKW-------EDEEIQAEVKRIYLENAIGEV-- 504 (518) Q Consensus 447 ~D~i~~-d~~~~~~~~~~~~~-aG~---------~S~~~~v~~~~--~~~-------~eeea~eev~rI~~E~~~~~~-- 504 (518) --++.. -+...++.+....+ .+. +....+++.+- -+. ++++++++.++-..+++.... T Consensus 429 vs~l~~l~r~~~~~~l~~~~~~v~~~~~p~vld~id~d~~~~~~a~~~Gv~~~~i~r~~~e~~~~~~q~~~q~~~~~~~~ 508 (543) T protein:vir:88 429 TTGAEALGRGQDLDKLTQFLNAVATVSQLNGDPDLNVNNIKLRLANAIGIDTAGLLLTEAEKAQAQSQEMLKQGGLNAAA 508 (543) T ss_pred EecHHHHHHHHHHHHHHHHHHHHHhccchhhhccCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHH Confidence 322211 01111111111111 011 22444444331 012 344443332221111111000 Q ss_pred -----------CCchh-ccCcCCCCC Q lcl|Aclame:pro 505 -----------PDPEA-IGGMETKGG 518 (518) Q Consensus 505 -----------~dp~~-~~~~~~~gG 518 (518) .-|.. .++....|| T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (543) T protein:vir:88 509 GIGSGVAAQATASPEAMESAMDTAGV 534 (543) T ss_pred HHhhchhhhhccChHHHHHHhhhcCC Confidence 00111 111122233 No 159 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=97.39 E-value=7.7e-05 Score=43.13 Aligned_cols=366 Identities=11% Similarity=0.036 Sum_probs=144.4 Q ss_pred CCcCchHH-------HHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCch----- Q lcl|Aclame:pro 1 MGVWSVMT-------RFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGT----- 68 (518) Q Consensus 1 ~~~~~~~~-------~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l----- 68 (518) ||++...+ .++.+|+.|.+.. ...... .+.. T Consensus 1 m~~f~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~--Al~~~~V~~ 43 (406) T protein:vir:97 1 MSFFQPLGTSKVSYDDYISSVLAGDVSQ-----------------------------------KYLGVS--ALKNSDILT 43 (406) T ss_pred CccccccCCCCCCcchHHHHHhcCCCCc-----------------------------------ccccch--hhccHHHHH Confidence 88886543 2233333322210 000000 0111 Q ss_pred -HHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHh--hcC---hHHHHHHHHHHHHhhCCEEEEEEEE--CCe Q lcl|Aclame:pro 69 -GNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALR--IDN---FDSKSVKIVELAGGSGVSAVKINIL--NGR 140 (518) Q Consensus 69 -~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn~---f~~~~~~~~e~~~a~G~~~~k~~~d--~~~ 140 (518) -..||+.+|++ | +.+-..++. ......+..+|. -|. ...-.+..+...+-.|.+++.+..+ +|+ T Consensus 44 ~i~~Ia~~iA~l----p--~~~~~~~g~--~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~ 115 (406) T protein:vir:97 44 ATSIIAGDIARF----P--LVKKDVNGD--IIHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQ 115 (406) T ss_pred HHHHHHHhhhhC----e--eEEEecCcc--ccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCe Confidence 22344444443 3 222211111 111112333332 111 1222333444555567777766544 244 Q ss_pred E-EEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccc Q lcl|Aclame:pro 141 P-SISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAE 219 (518) Q Consensus 141 i-~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~ 219 (518) + .+-.++|+++-+...++. ..+|+ +....++..+. T Consensus 116 ~~~L~~i~p~~v~v~~~~~~---------------~~~y~-------------------------~~~~~~~~~~~---- 151 (406) T protein:vir:97 116 ALQFQFYRPSETTVEETDNH---------------EIVYT-------------------------FTDMLTAKQVK---- 151 (406) T ss_pred EEEEEEECCCeeEEEEcCCc---------------eEEEE-------------------------EEecCCceEEE---- Confidence 3 455666666655432111 00111 00000100000 Q ss_pred ccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-e Q lcl|Aclame:pro 220 RLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-K 298 (518) Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-r 298 (518) + .... +.|++.... +.-.|+|.+.-+.+.|.....+-.-..+-|+.|.+ . T Consensus 152 -----~---------~~~e----------vih~r~~~~-----dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~ 202 (406) T protein:vir:97 152 -----C---------FAHD----------VIHWKFFSH-----DTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSG 202 (406) T ss_pred -----E---------cccc----------EEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 0 0000 223443211 12349999887777776544333333333555433 2 Q ss_pred eee-chhhhccCCCCCccccccCCCcchhheeeecCCcCCC----CCCCccceEecccccHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 299 IAA-SERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAG----AKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSG 373 (518) Q Consensus 299 i~v-~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G 373 (518) +++ +...+.. ... ..-.+.|....+....+ -+++..++.++....+.++++..+...+.|....| T Consensus 203 ~i~~~~~~l~~-----e~~-----~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afg 272 (406) T protein:vir:97 203 ILTMKGAQLSG-----DAR-----QRARQEFEKMREGSVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALR 272 (406) T ss_pred eEEecCCCCCH-----HHH-----HHHHHHHHHHhcccccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhC Confidence 221 1111110 000 00011122111110000 02233566666677788888888888889999999 Q ss_pred CCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 374 YNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 374 ~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d 453 (518) ++|..+|..... +.+|- .... .+..+|..++..+........ +.......+ .|+|+ +..+ T Consensus 273 VPp~~lg~~~~~-~~~e~---~~~~---------f~~~~l~P~~~~ie~~l~~kl---l~~~~~~~~--~i~fd--~~~~ 332 (406) T protein:vir:97 273 VPSYKLGVNSPN-QSVAQ---LMED---------YVTNDLPFYFDAITSELGLKT---LNDKDRRLY--HIEFD--TRSV 332 (406) T ss_pred CCHHHcCCCCCc-chHHH---HHHH---------HHHHHHHHHHHHHHHHHhhhh---cChhhccce--eEEEe--cCcc Confidence 999999854322 22221 1111 122233333333222211111 111111122 34444 2234 Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHc-CCCCHHHHHHHHHH---HHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 454 LNELSSTLNNMNSALAMSVEEKVKLIH-PKWEDEEIQAEVKR---IYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 454 ~~~~~~~~~~~~~aG~~S~~~~v~~~~-~~~~eeea~eev~r---I~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ....++.+.+++++|+|+..++.+++. |...+...++-+.. +.-+ ..+++.....-+++|| T Consensus 333 ~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~~----~~~~~~~~~~~~~~gg 397 (406) T protein:vir:97 333 TGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQSSLNYVFLD----KKEEYQDKVGIKGKGG 397 (406) T ss_pred chhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEeeccCccchh----cccccccccccccCCC Confidence 556677778889999999999887773 11222111111000 0000 0111111111233444 No 160 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=97.38 E-value=8e-05 Score=43.05 Aligned_cols=448 Identities=10% Similarity=0.021 Sum_probs=175.0 Q ss_pred chHH------HHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHH Q lcl|Aclame:pro 5 SVMT------RFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 5 ~~~~------~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ 78 (518) |+|. ...+.| +.+...+..+....++..+-.....+= ....+....++==+-+...++.+|+ T Consensus 1 ~~~~~~~e~~~l~~r~----------~~Lk~~R~~~e~~w~e~~~~~lP~~~~--~~~~~~~~~~~~dstg~~a~~~LAa 68 (517) T protein:vir:10 1 MDMRFAGNKSKIPKLY----------EQLVGKRSPFLSRAENYSRFTLPYLMA--DVNDDLSSQNAWQDDGASATNFLSN 68 (517) T ss_pred CcccccccHHHHHHHH----------HHHHHhhhHHHHHHHHHHHHhcccccc--CCCCCccccccccchHHHHHHHHHH Confidence 4443 222333 111111112222222222211121110 0011111112212245666666666 Q ss_pred HHcCCc-----ceEEecccccc------c-------h---HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE Q lcl|Aclame:pro 79 YISGKP-----LSIDVTGVNGS------K-------D---ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL 137 (518) Q Consensus 79 ll~~e~-----~~i~v~~~~~~------~-------d---~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d 137 (518) -|.+-. +=+.+...+.. + + +.....+...+..++|+..+.++.....+.|.+++ |.+ T Consensus 69 ~l~~~ltpp~~~WF~l~~~~~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--y~~ 146 (517) T protein:vir:10 69 KLSQVLFPAQRSFFRIDLTPEGIKQLDNEAMTQSTAQKLLSDVEKAAMLYGESLQFRPAVVEAFKHLIVTGNVMM--YHP 146 (517) T ss_pred HHHHhhcCCCCccccccCCHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEE--EEe Confidence 655542 22333322210 0 0 11223445677888999999999999999999764 566 Q ss_pred CCeEEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEE-EEEEeecccceeeeeeccceEEEEEEEeccCCcccc Q lcl|Aclame:pro 138 NGRPSISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYY-LVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTP 215 (518) Q Consensus 138 ~~~i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~-~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~ 215 (518) ++...+..++-..|+-.-+ +|++..+++-.++....-..-|. ..+- .........+....|-+.+++..++.... T Consensus 147 ~~~~~~~~~pl~~y~v~~d~~G~v~~ivrr~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~v~v~~~v~~~~~~~~~~ 223 (517) T protein:vir:10 147 DKTSPIQAVPLHHYCVRRDNNGTVLDIVFLQEKALETFEPSIRMAIQA---SRKGKQYKDKDNVKLYTHAKRTKDGKYLI 223 (517) T ss_pred CCCCcEEEEEcCeEEEeeCCCcCeEEEEeeeeccHHHHHHHhhhhcch---hhhhhccCCcCceEEEEEEEEeCCCceEE Confidence 6655666666666666433 47766655443322100000000 0000 00000000011122333333322211100 Q ss_pred ccccccccccccccccccCcccceeecCC---CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH-HHH Q lcl|Aclame:pro 216 ISAERLPEQITSYLHTNDIQLNHSVSIGL---KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY-MRE 291 (518) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~tg~---~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~-~~e 291 (518) . ..+ ....+.. ..+. ..|+++.--+ ...++.||+|--..+.+-++.|+..--.. .-. T Consensus 224 ~---------~~~-d~~~~~~----~s~y~~~e~P~~~~Rw~-----~~~ge~YGrgp~~~~L~D~k~L~~l~~~~~~~~ 284 (517) T protein:vir:10 224 R---------QSA-DDVPVGK----ESTVTEDKSPFLILTWK-----RSYGEDYGRGMAEDHAGAFFVIQFLSEALARGM 284 (517) T ss_pred E---------EEe-Cceeecc----ccccccccCCeeeeeee-----ecCCCCcccchHHHhHHHHHHHHHHHHHHHHHH Confidence 0 000 0000000 1111 1233322112 23467889999999999999998764443 335 Q ss_pred HHhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEec--ccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 292 GEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQ--GDFRDGSYRETMEYFAQKAV 369 (518) Q Consensus 292 ~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~ir~~~~~~~i~~~l~~i~ 369 (518) ....+....||++.+-...+ ..+.....+.. +.. ..+..++ .........+.|+.+-+.|. T Consensus 285 ~~a~~~~~lv~~~~~~~~~~--------l~~~~~g~~~~-------g~~--~~v~~~~~~~~~d~~~~~~~i~~~~~rI~ 347 (517) T protein:vir:10 285 ALMADVKYLVKPGSYTDINQ--------FVEGGSGAVLH-------GVE--GDIHIVQLGKYADYTPIQAVLNDYRQRIG 347 (517) T ss_pred HHhccCCcccCcccccchhh--------ccCCCcccccc-------CCc--ccceeeecccccchhHHHHHHHHHHHHHH Confidence 56677777776554322110 01111111111 111 1122222 21122223333444433333 Q ss_pred HHhCCCccccc-cCCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeC Q lcl|Aclame:pro 370 SKSGYNPATFN-LGNREVKATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFP 447 (518) Q Consensus 370 ~~~G~s~~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~ 447 (518) ... +-. .+. .++..+|||||..+.+...+...-.-..+.. .|..++.-++.+.... ...++ |.++.- T Consensus 348 ~af-~~~-~l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~l~~~-------l~~~~--v~~~~~ 416 (517) T protein:vir:10 348 RVF-MME-AMTRRDAERVTAYEIQRDAMLVEQSLGGVYSLFATTFQGPLARWFMNGISSI-------LTSKN--VSPTIL 416 (517) T ss_pred HHH-hhh-hhhccCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhh-------cCCCC--ccceee Confidence 222 111 122 2445689999988887766555443333322 3334444444332111 11112 222222 Q ss_pred CCCCCCHHHHHH-------HHHHHHh-CC-------CCCHHHHHHHH---c--C---CCCHHHHHHHHHHHHHhcccc-- Q lcl|Aclame:pro 448 DPMSVNLNELSS-------TLNNMNS-AL-------AMSVEEKVKLI---H--P---KWEDEEIQAEVKRIYLENAIG-- 502 (518) Q Consensus 448 D~i~~d~~~~~~-------~~~~~~~-aG-------~~S~~~~v~~~---~--~---~~~eeea~eev~rI~~E~~~~-- 502 (518) -++ ....+.+ .++.+-+ ++ .+-...+++.+ . | --+++|++++.+.-.+.++.. T Consensus 417 s~l--a~l~r~~~~~~i~~~~~~i~~~a~~~~~~~~~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~~~~~~~~~~~~~~ 494 (517) T protein:vir:10 417 TGI--EALGRMAELDKLGTFNGYVSMTAQWPEPLQQAIKWPDFTDWVQGQISANFPFFKTQDELNAEAQAQQEQEATKYA 494 (517) T ss_pred ccH--HHHHHHHHHHHHHHHHHHHHHhhcCChHHHhcCCHHHHHHHHHHHhCCChhhcCCHHHHHHHHHHHHHHHHHHHH Confidence 111 1111111 1111100 11 11233333332 1 1 014455544443332222221 Q ss_pred ------CCCCchhccCcCCCCC Q lcl|Aclame:pro 503 ------EVPDPEAIGGMETKGG 518 (518) Q Consensus 503 ------~~~dp~~~~~~~~~gG 518 (518) ....+-..+.-+..|| T Consensus 495 ~~~ag~~~~~~~~~~~~~~~~~ 516 (517) T protein:vir:10 495 AEQAGKAIPDMVKNGQINPQGG 516 (517) T ss_pred HHHHHHHHHHHHhCCCCCCCCC Confidence 1223344455567777 No 161 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=97.37 E-value=8.2e-05 Score=42.98 Aligned_cols=401 Identities=11% Similarity=-0.002 Sum_probs=164.4 Q ss_pred CC--c---CchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHH Q lcl|Aclame:pro 1 MG--V---WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEI 72 (518) Q Consensus 1 ~~--~---~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i 72 (518) |= . -+-+...+..|. |.|= .. .+..+.+.+.+.....+. ....+..+---.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-g~~~-------------s~------~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~c 60 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLKWL-GVPI-------------SL------TDGSFWSAWGGMGSSSGETVTADSALQLSAVWSC 60 (437) T ss_pred CCcchhhhhhhhHHhhhhhc-CCcc-------------cC------CchhHHHhhcccccCCCceechHhhhccHHHHHH Confidence 21 1 111112233444 2220 00 011111111112222221 1112222222234 Q ss_pred HHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEECCeE-EEEEE Q lcl|Aclame:pro 73 VVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINILNGRP-SISVH 146 (518) Q Consensus 73 ~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i-~i~~v 146 (518) ++.+|+-|.+=|..+--...++.........+..+|.. | ....-.+..+...+..|.+++.+..++|++ .+..+ T Consensus 61 i~~Ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~g~~~~L~~l 140 (437) T protein:vir:10 61 VRLIAETIATLPLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSAGVLIGLELM 140 (437) T ss_pred HHHHHHHHhhCceeEEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcEEEEEEE Confidence 45555554433433211111111101111112222321 1 122223334455566788887776666654 34555 Q ss_pred cCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccc Q lcl|Aclame:pro 147 SSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQIT 226 (518) Q Consensus 147 ~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~ 226 (518) +++.+-+.... +...+| .++.. ++.... + T Consensus 141 ~p~~v~i~~~~---------------~g~~~y-------------------------~~~~~-~g~~~~---------~- 169 (437) T protein:vir:10 141 LPQRTTVKRLT---------------SGALQY-------------------------TYRNV-DGTVST---------L- 169 (437) T ss_pred cCcceEEEECC---------------CCeEEE-------------------------EEEec-CceEEE---------E- Confidence 55554443210 110111 11100 000000 0 Q ss_pred cccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhh Q lcl|Aclame:pro 227 SYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERM 305 (518) Q Consensus 227 ~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~ 305 (518) ... -+.|+++... +...|+|.+.-+...+......-.....-|+.|. +.-++.- T Consensus 170 --------~~~----------dIih~r~~~~-----d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~-- 224 (437) T protein:vir:10 170 --------AED----------DVFHVRGFSL-----DGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLST-- 224 (437) T ss_pred --------ccc----------cEEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEc-- Confidence 000 0234543321 2357999988888777765554444444556654 3333321 Q ss_pred hccCCCCCccccccCCCcchhheeeec--CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC Q lcl|Aclame:pro 306 FRKKVNKSTDKEEWSMNVDEDYFMQFK--GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN 383 (518) Q Consensus 306 l~~~~~~~~~~~~~~~d~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~ 383 (518) +...+. ...... ...-.+.|.+.. +.. .--+++..++.++.+..+.++++..+...+.|....|++|..++..+ T Consensus 225 -~~~l~~-e~~~~~-~~~~~~~~~g~~nag~~-~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~ 300 (437) T protein:vir:10 225 -DQILQK-EKRAEI-RTDLAEQFGGAMQAGKT-MVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSE 300 (437) T ss_pred -CCCCCH-HHHHHH-HHHHHHHhcCccccCcc-eeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCC Confidence 111000 000000 000001111110 000 00112235777777888889999999999999999999999998754 Q ss_pred cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 384 RE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLN 462 (518) Q Consensus 384 ~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~ 462 (518) .+ .+.+.+...... .++.+|..++..+-....... +.......+.+.++++..+..|.+++++.+. T Consensus 301 ~~t~~~sn~e~~~~~----------f~~~tl~P~~~~ie~~l~~kl---l~~~e~~~~~~~fd~~~ll~~d~~~r~~~~~ 367 (437) T protein:vir:10 301 KSTSWGTGIEQQTLG----------FLTFTLRPWLTRIEQAARRSL---LRPGERDQFYAEFSVEGLLRADSAGRAAFYS 367 (437) T ss_pred CcccccchHHHHHHH----------HHHHHHHHHHHHHHHHHHhhc---cCccccCceEEEEechhhhccCHHHHHHHHH Confidence 32 222222222211 223334343333322222111 1111112345777888888899999999999 Q ss_pred HHHhCCCCCHHHHHHHHcC-CCCHHHH----HHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 463 NMNSALAMSVEEKVKLIHP-KWEDEEI----QAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 463 ~~~~aG~~S~~~~v~~~~~-~~~eeea----~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +++.+|+|++-++.+++.. ....... ..-+..+.. .... .|...+.-..+|| T Consensus 368 ~~~~~G~~T~NE~R~~~gl~pi~gg~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~ 424 (437) T protein:vir:10 368 TMTQNGLMTRDECRAKENLPPMGGNAAVLTVQSALLPIDK--LGEH--TTATAAQDALKAW 424 (437) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCCcceEeecCcccchhh--ccCc--CCCcchhcccccc Confidence 9999999999998877621 1221110 000011111 1100 1111111112222 No 162 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=97.37 E-value=8.4e-05 Score=42.93 Aligned_cols=425 Identities=11% Similarity=0.029 Sum_probs=165.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhH----HhhHHHHhhccchhhhhhhhhhhhhhhccCC----CCc-----------c-c Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEP----ELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY----VPT-----------V-H 60 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~----~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----~~~-----------~-~ 60 (518) -|.---+|-.--+|-.-.--.--. .-+.+.....+=..+.-. . -.+.|...+. .+. . . T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~i~~pfkkk~~~-~-~~d~f~~s~es~s~vtsls~pdaf~~vnVs~ 118 (945) T protein:vir:10 41 PGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPP-F-KFNLFEYSPESLMYLPSISDPDAFFLINLFR 118 (945) T ss_pred CCcchhhhhhhhhccceeeeeeeeehhhhHHHhhcccccccccccc-h-hhhhhhccCccceecccccCccceeeehhhh Confidence 444444444444452110000000 000111100000000000 0 0000000000 000 0 0 Q ss_pred cceecCchHHHHHHHHHHHHcCCcceEEeccccccchH-----HHHHHHHHHHhh-c------ChHHHHH-HHHHHHHhh Q lcl|Aclame:pro 61 DKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDE-----NLTKQLKEALRI-D------NFDSKSV-KIVELAGGS 127 (518) Q Consensus 61 ~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~-----~~~~~l~~vl~d-n------~f~~~~~-~~~e~~~a~ 127 (518) +..+....-..+++.+|+-+.+=|..+-=...+...+. .....+..++.. | .|+..+. ..+...+.. T Consensus 119 ~~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~ 198 (945) T protein:vir:10 119 KYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTI 198 (945) T ss_pred hhhhccHHHHHHHHHHHhhhccCceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhc Confidence 11111112223455555555444443311111111110 011123334432 1 2333343 345667777 Q ss_pred CCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEE Q lcl|Aclame:pro 128 GVSAVKINIL-NGRP-SISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYS 204 (518) Q Consensus 128 G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ 204 (518) |.+++.+..+ +|++ .+..++|+.+-|... +|.. +|+.. T Consensus 199 GNAYieIiRd~~G~ii~L~pLdPs~Vti~~ddDG~~----------------~y~Yv----------------------- 239 (945) T protein:vir:10 199 DRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDTGI----------------VVGYV----------------------- 239 (945) T ss_pred CCeEEEEEECCCCcEEEEEEECCcceEEEEcCCCcE----------------EEEEE----------------------- Confidence 8888876654 4554 466677776666422 2211 11100 Q ss_pred EEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHH Q lcl|Aclame:pro 205 VIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYF 284 (518) Q Consensus 205 ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~ 284 (518) +..++ . .. . .+ .... .+.+++++.++ ....++|+|.+..+...+.....+ T Consensus 240 -~~idG-~-~~-------~---~v-------------~a~D--vIlhirn~s~D--G~~~GyGlSPIeaa~~aI~~alAa 289 (945) T protein:vir:10 240 -QEVDG-A-IV-------A---HF-------------DKRD--VVLFRQNLTPD--VYMYGYSLPPIEILYKVILSDIFI 289 (945) T ss_pred -EecCC-c-eE-------E---Ee-------------cCCc--eEEEeccCCCC--cccccCCchHHHHHHHHHHHHHHH Confidence 00000 0 00 0 00 0000 12334443322 223456999887777666554333 Q ss_pred HHHHHHHHH-hcc-ce--eeechhhhccCCCCCccccccCCCcc---hhheeeecCCcCCC----CCCCccceEeccccc Q lcl|Aclame:pro 285 FTVYMREGE-KTK-TK--IAASERMFRKKVNKSTDKEEWSMNVD---EDYFMQFKGTLDAG----AKLNDMIQFMQGDFR 353 (518) Q Consensus 285 ~s~~~~e~~-~g~-~r--i~v~~~~l~~~~~~~~~~~~~~~d~d---~~~~~~~~~~~~~~----~~~~~~i~~~~~~ir 353 (518) -..-.+-|. .|. ++ +.++.... .+....+. ...+.. .+.+.........+ -+++..++.++.... T Consensus 290 ek~aar~FskNGa~PsGILsvkg~~~-~d~k~~~~---LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~ 365 (945) T protein:vir:10 290 DKGNLDYYRKGGSIPEGILAIEPPSY-KEGDIYPQ---LSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRR 365 (945) T ss_pred HHHHHHHHHhCCCccceEEEecCccc-cccccccc---cCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccCChh Confidence 322333343 342 22 22221110 00000000 000000 01111111000000 122234667777788 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 354 DGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWSLQDAT-VRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNK 431 (518) Q Consensus 354 ~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t-~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~ 431 (518) +.++.+..+...+.|....|++|..+|+.++. .+..|- ..... -.++.-....++..|...+ . T Consensus 366 DaQfLEsrkfs~eeIArAFGVPP~lLG~~e~st~SNiEq--q~~~Fv~~tL~Pil~~IEqeLNrkL-----------l-- 430 (945) T protein:vir:10 366 DMQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEV--MASLTKAKGLEPLMATISKGFDEVV-----------S-- 430 (945) T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHhc-----------c-- Confidence 99999999999999999999999999874332 222221 11111 1234444444444333221 0 Q ss_pred cCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcC-CCCH-HHH--H-HHH---HHH-HHhccc- Q lcl|Aclame:pro 432 EKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHP-KWED-EEI--Q-AEV---KRI-YLENAI- 501 (518) Q Consensus 432 ~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~-~~~e-eea--~-eev---~rI-~~E~~~- 501 (518) .......+.++|+.....|.+++++.+.+++++|+|++-++.+++.. -... ++. . .-+ ... +..++. T Consensus 431 ---~~~eg~~i~fdFd~ldl~D~ksraEal~kli~sGiLTiNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~ 507 (945) T protein:vir:10 431 ---EFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAM 507 (945) T ss_pred ---ccccCceeEEEecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccccCCC Confidence 01112357788988888899999999999999999999998776521 1110 000 0 000 000 000100 Q ss_pred ------cCCCCchhccCcCCCCC Q lcl|Aclame:pro 502 ------GEVPDPEAIGGMETKGG 518 (518) Q Consensus 502 ------~~~~dp~~~~~~~~~gG 518 (518) +..++|..-|+-..+.+ T Consensus 508 p~q~aq~~~dqp~~kGGe~dEns 530 (945) T protein:vir:10 508 PPQLAQAMADQPSQQGGGVDENS 530 (945) T ss_pred CcccccCCCCCCCCCCCCCCCCC Confidence 01111222121111111 No 163 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=97.34 E-value=9e-05 Score=42.77 Aligned_cols=404 Identities=10% Similarity=0.023 Sum_probs=161.3 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhc---------cchhhh-hhhhhhhhhhhccCCCCc---cccceecCc Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLV---------PDNQKE-WSKDSYLTSLWAQGYVPT---VHDKLMNSG 67 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~w~~~~~~~---~~~~~~~~~ 67 (518) ||+-. |++|.+.. +...-++-.+.. .+.... ........++++ ....+ ....-+... T Consensus 1 Mgl~d--------~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~al~~~ 70 (431) T protein:vir:10 1 MGLFD--------FIRREKQP-EAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRR-GELNGGTGRETRALRNM 70 (431) T ss_pred Ccchh--------hhhcCccc-ccccccccccccccccccccccccccccccchHHHHhhcc-CccCcceechhhhhccH Confidence 88544 44443321 111111110000 000000 000001111111 11111 111222222 Q ss_pred hHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhh--cCh--HHHHHH-HHHHHHhhCCEEEEEEEECCeE- Q lcl|Aclame:pro 68 TGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRI--DNF--DSKSVK-IVELAGGSGVSAVKINILNGRP- 141 (518) Q Consensus 68 l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n~f--~~~~~~-~~e~~~a~G~~~~k~~~d~~~i- 141 (518) --..+++.+|+-+-+=|+.+- ..+.+........+..+|.. |.+ ...|.+ .+...+-.|.+++.+..++|++ T Consensus 71 ~V~~ci~~Ia~~iA~lp~~v~--~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~ 148 (431) T protein:vir:10 71 AVLRCVTLISGTIGMLPMNLI--SSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNRPI 148 (431) T ss_pred HHHHHHHHHHHhhccCceEEE--EecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCceE Confidence 233455666666655454431 11111111111223333321 111 112333 3445555688888777766553 Q ss_pred EEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccc Q lcl|Aclame:pro 142 SISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERL 221 (518) Q Consensus 142 ~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~ 221 (518) .+-.++++.+-+...+ +...+| .++.. .+.... T Consensus 149 ~L~pl~~~~v~~~~~~---------------~~~~~y-------------------------~~~~~-~g~~~~------ 181 (431) T protein:vir:10 149 RLIPMDRGSAKGRLTS---------------TWQIVY-------------------------DYTTP-TGDKIE------ 181 (431) T ss_pred EEEEEcCceeEEEEcC---------------CCeEEE-------------------------EEEeC-CceEEE------ Confidence 3334444444432111 111111 11110 010000 Q ss_pred ccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhccceee Q lcl|Aclame:pro 222 PEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR-EGEKTKTKIA 300 (518) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~-e~~~g~~ri~ 300 (518) + ... -+.|+++...| ...|+|...-+...|.-. .+..++.. -|+.|-.. T Consensus 182 ---~---------~~~----------dViHir~~~~d-----g~~G~spi~~~~~~i~~~-~~~~~~~~~~f~ng~~p-- 231 (431) T protein:vir:10 182 ---L---------PAR----------EVFHLRDLSID-----GVSGVSRVKLSGNALELA-EQAERAASRTFRTGVMA-- 231 (431) T ss_pred ---E---------chh----------hEEEecCcCCC-----CcccccHHHHHHHHHHHH-HHHHHHHHHHHhccCCc-- Confidence 0 000 02344443222 346999988888777544 44444444 44655442 Q ss_pred echhhhccCCCCCccccccCCCcchhheeeec-CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 301 ASERMFRKKVNKSTDKEEWSMNVDEDYFMQFK-GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF 379 (518) Q Consensus 301 v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf 379 (518) ..++.....-...........-.+.|.+.. ..--.--+++-.++.++....+.++++..+...+.|....|++|..+ T Consensus 232 --~gil~~~~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~l 309 (431) T protein:vir:10 232 --GGAIEVPKELSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLL 309 (431) T ss_pred --cEEEecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHh Confidence 111222111000000000000001111100 00000011223466677777888999999988899999999999999 Q ss_pred ccCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 380 NLGNRE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELS 458 (518) Q Consensus 380 ~~d~~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~ 458 (518) +..++. .+..| ..+. ..++.+|..++..+-...... .+.......+.+.++++.-+..|..+++ T Consensus 310 g~~~~~t~sn~e--q~~~----------~f~~~tL~P~~~~ie~~ln~~---Ll~~~~~~~~~~~fd~~~llr~d~~~r~ 374 (431) T protein:vir:10 310 MMDDTSWGSGIE--QLAI----------FFIQYGLSHWFVSWEQAAARA---FLPEKMLGQRQFKFNEGALLRGTLNDQA 374 (431) T ss_pred CCCCCCccccHH--HHHH----------HHHHHHHHHHHHHHHHHHHhh---ccChhhcCCceEEEechhhhccCHHHHH Confidence 875432 22222 1111 112223333333322221111 1111111234577888888899999999 Q ss_pred HHHHHHHhCCC----CCHHHHHHHHcC-CCCHHHHHHHHHHHHHhccccCCCCchhcc Q lcl|Aclame:pro 459 STLNNMNSALA----MSVEEKVKLIHP-KWEDEEIQAEVKRIYLENAIGEVPDPEAIG 511 (518) Q Consensus 459 ~~~~~~~~aG~----~S~~~~v~~~~~-~~~eeea~eev~rI~~E~~~~~~~dp~~~~ 511 (518) +.+.+++.+|+ |+.-++.+++.. -.++.+.++-..-. .-+......+|...- T Consensus 375 ~~~~~~~~~G~~~g~lT~NE~R~~~gl~p~~~~~gD~~~~p~-n~~~~~~~~~~p~~~ 431 (431) T protein:vir:10 375 AFFSKALGAGGQSPWMKQNEVREMLDLPRADDPVADQLRNPM-TQKQKGSGDEPPATT 431 (431) T ss_pred HHHHHHHhcccccCccCHHHHHHHhCCCCCCCccccceeccc-ccccCCCCCCCCCCC Confidence 99999988776 788887666532 13332232111000 000001111111111 No 164 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=97.25 E-value=0.00012 Score=42.17 Aligned_cols=460 Identities=9% Similarity=0.003 Sum_probs=175.0 Q ss_pred CCcCch---HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSV---MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~---~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) |-=+-- =.+.+|.=| +.+...+..+....++..+-...+.+=.....-..+..++-=+.+...++.+| T Consensus 1 m~~~~~~~~~~~~~~~r~---------~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~LA 71 (532) T protein:vir:99 1 MAEVEKTGFAADGAAAAY---------NRLKNDRGAYETRAEDCATYTIPSVFPSATADGSTSYTTPWQSIGARGLNNLA 71 (532) T ss_pred CcchhhccccHHHHHHHH---------HHHHHHhhHHHHHHHHHHHHhhhcccCCCCCcchhhccccccchHHHHHHHHH Confidence 211000 011222111 11111122222222222222222221111111111112222234666666666 Q ss_pred HHHcCCc-----ceEEeccccccc----------h------HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEE Q lcl|Aclame:pro 78 EYISGKP-----LSIDVTGVNGSK----------D------ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINI 136 (518) Q Consensus 78 ~ll~~e~-----~~i~v~~~~~~~----------d------~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~ 136 (518) +-|.+-. +=+.+...+..- + +.+.+.+...|..++|+..+.+++....+.|.+++-.-. T Consensus 72 a~L~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~ 151 (532) T protein:vir:99 72 SKLMLALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERICMNYMESNSFRPTLHAAIKQLLVAGNVLLYIPS 151 (532) T ss_pred HHHHHhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEecc Confidence 6655542 223333222110 0 122334556777899999999999999999999885433 Q ss_pred EC----CeEEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCc-eEEEEEEEEeecccceeeeeeccceEEEEEEEeccC Q lcl|Aclame:pro 137 LN----GRPSISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNK-ADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDG 210 (518) Q Consensus 137 d~----~~i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~-~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~ 210 (518) ++ ....+..++-..|+-.-+ +|++..+++-.++....- ..+...++.-... ...+..-.|-+.++.-.+ T Consensus 152 ~~~~~~~~~~f~~~pl~~y~v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~-----~~p~~~v~v~~~v~~~~~ 226 (532) T protein:vir:99 152 TEQVEGQSNAPKLYKLHNFVVERDAYDNVLQIVTEDKIARAALPEDVRKSLEDAQGD-----QNPSEEVTIYTHVYRDPE 226 (532) T ss_pred cccccCcccceEEEEcCeEEEeeCCCCCeeeEeeeeeecHHhcChHHHHHhhccccc-----cCCCcceEEEEEEEecCC Confidence 22 234677777777666533 477666654333221000 0000000000000 000011222233333221 Q ss_pred CccccccccccccccccccccccCcccceeecCC----CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 211 DKTTPISAERLPEQITSYLHTNDIQLNHSVSIGL----KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFT 286 (518) Q Consensus 211 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~----~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s 286 (518) +.. ...+....+- ......+. ..|+++.--+ ...++.||+|--..+.+-++.|+..-- T Consensus 227 ~~~-----------~~~~~~~~g~--~~~~~~~~~~~~e~P~~~~Rw~-----~~~ge~YGrgp~~~~l~D~k~L~~l~~ 288 (532) T protein:vir:99 227 AMV-----------FRSYQEIDGE--IVAGTEGEYPLDSCPWIPVRLI-----KMPNEDYGRSFVEEYLGDLKSLENLYE 288 (532) T ss_pred CCe-----------eEEEEeecCc--eecccccccccccCCceeeeee-----ecCCCccccchHHHHHHHHHHHHHHHH Confidence 100 0000000000 00000110 1233322112 234678899999999999999987644 Q ss_pred HHHH-HHHhccceeeec-hhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHH Q lcl|Aclame:pro 287 VYMR-EGEKTKTKIAAS-ERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYF 364 (518) Q Consensus 287 ~~~~-e~~~g~~ri~v~-~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~ 364 (518) .... .....+....|+ ...++...- .+.....+.. |..+...+..+...-+...-.+.|+.+ T Consensus 289 ~~l~~~~~a~~~~~lv~p~g~~~~~~~---------~~~~~g~~v~-------g~~~~i~~~~~~~~~~~~~~~~~i~~~ 352 (532) T protein:vir:99 289 AIVKMSMISSKVLFFVNPNGVTQIRRV---------AKANTGDFVA-------GRKQDVEVFQLEKYNDFQVAKATADDI 352 (532) T ss_pred HHHHHHHHHcCCCceeccccccchhhh---------ccCCCcceec-------CCcccceeeecccccchhHHHHHHHHH Confidence 4433 334455554554 333222110 0111111211 111111111112222233334444444 Q ss_pred HHHHHHHhCCCccccc-cCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCCCcCCceee Q lcl|Aclame:pro 365 AQKAVSKSGYNPATFN-LGNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRV 442 (518) Q Consensus 365 l~~i~~~~G~s~~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v 442 (518) -+.|.... +-- .+. .|+..+|||||..+.+...+...-.-..+. +.|..++.-++.+.... ......+..-+.+ T Consensus 353 ~~rI~~af-~~~-~~~~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~--g~lP~~p~~~~~~ 428 (532) T protein:vir:99 353 EKRLSYAF-MLN-SAVQRGGDRVTAEEIRYVAGELEDTLGGVYSLLSQELQLPLVKILLKELQAT--SKIPNLPKEAVEP 428 (532) T ss_pred HHHHHHHH-hhh-hcccCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCChhhccc Confidence 44443332 110 122 245568999998888776666554443332 34555555555554322 1111222222223 Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh-----CCC-------CCHHHHHHHH---c---CC---CCHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 443 IIEFPDPMSVNLNELSSTLNNMNS-----ALA-------MSVEEKVKLI---H---PK---WEDEEIQAEVKRIYLENAI 501 (518) Q Consensus 443 ~v~f~D~i~~d~~~~~~~~~~~~~-----aG~-------~S~~~~v~~~---~---~~---~~eeea~eev~rI~~E~~~ 501 (518) .+. ...+...+++.+..+.+ +.+ +....+++.+ . +. -++|+++++.++-+..+++ T Consensus 429 ~iv----~~is~Laraq~~~~l~~~~~~laq~~p~~~d~id~d~~~~~~a~~~GV~~~~i~r~~ee~~~~~~q~~~~~~~ 504 (532) T protein:vir:99 429 AIA----TGLEALGRGHDLNKLNVFIDYMIKLAGLQDDDINLLDVKMRLANSLGMDTTGLILTQQDKQAKMAEASTAAGM 504 (532) T ss_pred cee----ecchHHHHHHHHHHHHHHHHHHHhhcchhhhhCCHHHHHHHHHHHhCCChhhccCCHHHHHHHHHHHHHHHHH Confidence 221 11222223222222111 111 2344444433 1 11 2455555555443333222 Q ss_pred cCCCC--c-----------hhccCcCCC Q lcl|Aclame:pro 502 GEVPD--P-----------EAIGGMETK 516 (518) Q Consensus 502 ~~~~d--p-----------~~~~~~~~~ 516 (518) .+... . ..-.++++. T Consensus 505 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (532) T protein:vir:99 505 VTAGQQMGAAGGQAAAAMMQQQAGMPTQ 532 (532) T ss_pred HHHHHHHHHHHHHhcchhHHhhcCCCCC Confidence 11000 0 000111111 No 165 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=97.20 E-value=0.00013 Score=41.81 Aligned_cols=383 Identities=10% Similarity=0.013 Sum_probs=153.8 Q ss_pred cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcC Q lcl|Aclame:pro 3 VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISG 82 (518) Q Consensus 3 ~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~ 82 (518) .+|.|.+++ +......+......+. ...........+.+.....-..+.-+..+--..+++.+|+-+-. T Consensus 1 m~m~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~ia~ 69 (392) T protein:vir:74 1 MILPILNFI----NQTNDPPEAGSVQSYF-------PDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAI 69 (392) T ss_pred Ccchhhhhh----hcccCccccccccccc-------ccCchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhcc Confidence 444444433 3322211100000000 00000000000000000000011112222233456666666644 Q ss_pred CcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE-cCc Q lcl|Aclame:pro 83 KPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFK-NNE 159 (518) Q Consensus 83 e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~-~g~ 159 (518) =| |.+-... . ...+++-=..-.-..-.+..+...+..|.+++.+..+ +|++ .+..++|+.+-+.-. +|. T Consensus 70 lp--~~~~~~~---~---~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~ 141 (392) T protein:vir:74 70 VK--INAEKKK---N---QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN 141 (392) T ss_pred Cc--eeeccch---h---hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCc Confidence 33 3332111 1 1112110000011222333455667778877776555 3554 456666665544321 111 Q ss_pred EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce Q lcl|Aclame:pro 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) Q Consensus 160 ~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (518) .++++.... ++..... . .+..+ T Consensus 142 ----------------~~~y~~~~~-------------------------~~~~~~~------~---------~~~~~-- 163 (392) T protein:vir:74 142 ----------------GMYYNITFD-------------------------DPKIEPI------L---------QAPQS-- 163 (392) T ss_pred ----------------eEEEEEEec-------------------------CCcccee------E---------EEcCc-- Confidence 111111000 0000000 0 00000 Q ss_pred eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eee--echhhhccCCCCCccc Q lcl|Aclame:pro 240 VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIA--ASERMFRKKVNKSTDK 316 (518) Q Consensus 240 ~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~--v~~~~l~~~~~~~~~~ 316 (518) -+.|++....+ +...|+|.+.-+...|.....+-.-...-|+.|-. .-+ +|......+. .. T Consensus 164 --------evih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~~----~~ 227 (392) T protein:vir:74 164 --------DLIHMKLLSID----GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK----DK 227 (392) T ss_pred --------cEEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHH----HH Confidence 02344433222 23459999988888885544443333344566543 322 2222211100 00 Q ss_pred cccCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHH Q lcl|Aclame:pro 317 EEWSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQ 395 (518) Q Consensus 317 ~~~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~ 395 (518) ..-.+.|....... -.--+++..++.++.+..+.++++..+...+.|....|++|..+|..+...+..|- . T Consensus 228 -----~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~e~---~ 299 (392) T protein:vir:74 228 -----ASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQ---I 299 (392) T ss_pred -----HHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHH---H Confidence 00001111111000 00011233567777777888999999999999999999999999864332222111 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 396 DATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEK 475 (518) Q Consensus 396 ~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~ 475 (518) .. .++.+|..++..+......... . .+.+++...+-.|..+.++.+..++.+|+++..++ T Consensus 300 ~~----------~~~~~l~p~~~~ie~~l~~~l~---~-------~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nea 359 (392) T protein:vir:74 300 SG----------MYASALNRYLRPAISELEYKLS---D-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQA 359 (392) T ss_pred HH----------HHHHHHHHHHHHHHHHHHHhcc---c-------hhcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHH Confidence 11 2223333333333222211111 0 12333444455678888999999999999999998 Q ss_pred HHHH-cCCCCHHHHHHHHHHHHHhccccCCCCchhccCc-CCCC Q lcl|Aclame:pro 476 VKLI-HPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM-ETKG 517 (518) Q Consensus 476 v~~~-~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~-~~~g 517 (518) .+.+ ..++...++.+ .|+ .++.|. |.- ++-. T Consensus 360 r~~~~~~g~~pne~r~------~en---l~~~~~--Gd~~~p~p 392 (392) T protein:vir:74 360 TFVLQEAGYIPKDLPA------PEN---TNKKTT--GQSNEPVP 392 (392) T ss_pred HHHHHhCCCCccccch------hcC---CCCCCC--CCCCCCCC Confidence 7654 22343333321 111 111110 000 0000 No 166 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=97.17 E-value=0.00014 Score=41.65 Aligned_cols=398 Identities=9% Similarity=-0.044 Sum_probs=162.6 Q ss_pred HHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCcceEE Q lcl|Aclame:pro 9 RFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKPLSID 88 (518) Q Consensus 9 ~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~ 88 (518) =+.+.|.+....... .-.......+..... ...|.... ....+..+---..++.+|+-+.+=|+.+- T Consensus 1 ~~f~~~f~r~~~~~~-~~~~~~~~~~~~~~~---------~~~g~~v~---~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~ 67 (413) T protein:vir:48 1 MFFSGLFQRKSDAPV-TTPAELAEAIGLSYD---------TYTGKRIS---SQRAMRLTAVYSCVRVLAESVGMLPCSLY 67 (413) T ss_pred CccchhhccCccCCc-cchHHHHHhhhcCcc---------cccCceec---hhhhhccHHHHHHHHHHHHhhhhCceEEE Confidence 112333322211000 000000000000000 00000000 11112222223345556666555444432 Q ss_pred eccccccchHHHHHHHHHHHhh-----cChHHHHHHHHHHHHhhCCEEEEEEEECCeE-EEEEEcCCeeEEEEEcCcEEE Q lcl|Aclame:pro 89 VTGVNGSKDENLTKQLKEALRI-----DNFDSKSVKIVELAGGSGVSAVKINILNGRP-SISVHSSSQFWIDFKNNEPFR 162 (518) Q Consensus 89 v~~~~~~~d~~~~~~l~~vl~d-----n~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i-~i~~v~ad~~~P~~~~g~~~~ 162 (518) -. .+....+.....+..+|.. -....-.+..+...+..|.+++.+.-+.|++ .+-.++++.+-+.... T Consensus 68 ~~-~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~g~~~~L~~l~~~~v~~~~~~----- 141 (413) T protein:vir:48 68 KI-SGTLKTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKALGEVVELLPIDPGCVEPKLNS----- 141 (413) T ss_pred Ee-cCCcceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeCCCcEEEEEEEcCceEEEEEcC----- Confidence 11 1111111111223333321 1222333344556667788887776666664 3445555555543211 Q ss_pred EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccceeec Q lcl|Aclame:pro 163 FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSI 242 (518) Q Consensus 163 ~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~t 242 (518) +...+|+ .... .+.... + ... T Consensus 142 ----------~~~~~y~-~~~~-------------------------~g~~~~---------~---------~~~----- 162 (413) T protein:vir:48 142 ----------QWQPVYQ-VTFP-------------------------DGSVDV---------L---------TQD----- 162 (413) T ss_pred ----------CceEEEE-EEec-------------------------CceEEE---------E---------ccc----- Confidence 1111111 1000 000000 0 000 Q ss_pred CCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCCCccccccCC Q lcl|Aclame:pro 243 GLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNKSTDKEEWSM 321 (518) Q Consensus 243 g~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~~~~~~~~~~ 321 (518) -+.|++.... +...|+|...-+...|+.....-.....-|+.|. ++-++. .............. T Consensus 163 -----evih~~~~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~-----~~~~~~~e~~~~~~ 227 (413) T protein:vir:48 163 -----EIWHVRTLTL-----DGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLR-----TEQKLTPDAYERLK 227 (413) T ss_pred -----cEEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEE-----eCCCCCHHHHHHHH Confidence 0233443211 2356999999888888765544443444456544 433332 11110000000000 Q ss_pred Ccchhheeeec-CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c-hHHHHHHHHHHH Q lcl|Aclame:pro 322 NVDEDYFMQFK-GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V-KATEIWSLQDAT 398 (518) Q Consensus 322 d~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~-TAtEi~s~~~~t 398 (518) ..-.+.|.+.. ..-..-.+++..++.++....+.++.+..+...+.|....|++|..++..++. . ++.+. . T Consensus 228 ~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~---~--- 301 (413) T protein:vir:48 228 KDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEEL---G--- 301 (413) T ss_pred HHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHHHH---H--- Confidence 00001111110 00000011223467777777888999999999999999999999999875432 1 22211 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHH Q lcl|Aclame:pro 399 VRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKL 478 (518) Q Consensus 399 ~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~ 478 (518) ...++.+|..++..+......... .......+.+.++++..+..|.+++++.+++++++|+|++-++.++ T Consensus 302 -------~~f~~~~i~P~~~~ie~~l~~~L~---~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~ 371 (413) T protein:vir:48 302 -------LGFINYSLVPYLTRIEQRINTGLV---RESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDL 371 (413) T ss_pred -------HHHHHHHHHHHHHHHHHHHHhhcc---CccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHH Confidence 112233444444433322221111 1111123467788888888899999999999999999999998876 Q ss_pred HcCCCCH-HHHHHHHHHH---HHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 479 IHPKWED-EEIQAEVKRI---YLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 479 ~~~~~~e-eea~eev~rI---~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +. +.. +..++-+... ..+++. ....+...++-..+.. T Consensus 372 ~g--~~p~~ggD~~~~~~n~~~~~~~~-~~~~~~~~~~~~~~~~ 412 (413) T protein:vir:48 372 ED--MNPRPGGDVYLTPMNMTTSPSAG-DDNGKKKESGDADKTA 412 (413) T ss_pred hC--CCCCCCcceeecccccccccccc-ccCCCCCCCCCccccC Confidence 63 221 1111100000 000000 0000000011111111 No 167 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=97.16 E-value=0.00015 Score=41.56 Aligned_cols=431 Identities=14% Similarity=0.078 Sum_probs=171.9 Q ss_pred CCcCchHH-------HHHHHHhcCC------CChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCc--------- Q lcl|Aclame:pro 1 MGVWSVMT-------RFIKGWLNGK------PNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPT--------- 58 (518) Q Consensus 1 ~~~~~~~~-------~~~~~w~~g~------p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--------- 58 (518) |||-..+. +++++= +-+ -.-.+.+.+.+.+.. .-+.+.........+.+.+.++ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~---~~~a~~~~~~~~~~~~~~~~~r~~~~~~~~l 80 (551) T protein:vir:80 5 LGLFESIRLVGVNKSDAVKHI-EVDDNYSIAIQQREQEQISKAMNN---KEVAYSQPVIGSMSANPGFKTKPSIRNNQDL 80 (551) T ss_pred hhhHHHhhhccCChhhccccc-ccccceeeecccccHHHHHHhhcc---CcceeecccccceecCcccccCccccChhHH Confidence 77654433 333111 000 000111112121110 0000000000000111111100 Q ss_pred --cccceecCchHHHHHHHHHHHHcCC-----------cceEEecccc---ccchHHHHHHHHHHHhhcC---------h Q lcl|Aclame:pro 59 --VHDKLMNSGTGNEIVVVAAEYISGK-----------PLSIDVTGVN---GSKDENLTKQLKEALRIDN---------F 113 (518) Q Consensus 59 --~~~~~~~~~l~~~i~~~~A~ll~~e-----------~~~i~v~~~~---~~~d~~~~~~l~~vl~dn~---------f 113 (518) ..+....-++...+++..|+.+..- +..|.+...+ ...+...-+.+.+++..-+ | T Consensus 81 ~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~ 160 (551) T protein:vir:80 81 HGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSF 160 (551) T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchH Confidence 0011122355566666667665421 1122222111 1112222233444444322 3 Q ss_pred HHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccce Q lcl|Aclame:pro 114 DSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWD 190 (518) Q Consensus 114 ~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~ 190 (518) ...+...+...+..|.+++.+..+ +|+| .+..++|+.+-+... +|.... ...+|+. T Consensus 161 ~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~-----------~~~~y~~---------- 219 (551) T protein:vir:80 161 SSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPD-----------NGNRFVQ---------- 219 (551) T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCcccccc-----------CceEEEE---------- Confidence 334445566677778888877665 4554 477777777776532 232100 0000100 Q ss_pred eeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEec-CcccCccccCCCCCcc Q lcl|Aclame:pro 191 KEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLIN-NSPSNTRYPHLNLGES 269 (518) Q Consensus 191 ~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~-n~~~N~~~~~sPlG~S 269 (518) +. .+...+. + ..+. +.|++ |+.. .....++|+| T Consensus 220 ---------------~~-~g~~~~~---------~---------~~~e----------iiH~~~n~~~--~~~~~~~G~s 253 (551) T protein:vir:80 220 ---------------VI-DQKIVAT---------F---------NARE----------MAFAVRNPRS--DIYATGYGYP 253 (551) T ss_pred ---------------Ee-CCcEEEE---------E---------cccc----------eEEecccCCC--Cccccccccc Confidence 00 0000000 0 0000 12222 2211 1123467999 Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcc-ceee--echhh-hccCCCCCccccccCCCcchhheeeecCCcC-C-CCCCCc Q lcl|Aclame:pro 270 DLSQCTNYLFAVDYFFTVYMREGEKTK-TKIA--ASERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTLD-A-GAKLND 343 (518) Q Consensus 270 ~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~--v~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~-~-~~~~~~ 343 (518) .+.-+...|.....+-.-...=|+.|. +.-+ ++... +.. ...... -..-...|.+...... . -..++- T Consensus 254 pi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~-----e~~~~l-k~~~~~~~~G~~nag~~~vl~~~g~ 327 (551) T protein:vir:80 254 ELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQ-----HALEIF-KREWKNSLSGINGSWQIPVVSAEDV 327 (551) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCH-----HHHHHH-HHHHHHHhcCccccCccccccCCCc Confidence 998888888665444333334456654 3322 22110 000 000000 0000011211110000 0 001123 Q ss_pred cceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 344 MIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWSLQDATVRKIEK-KKRLIQNVYEQMLWDFL 421 (518) Q Consensus 344 ~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t~~t~~~-~~~~~~~~l~~li~~il 421 (518) .++.++....+.++++..+...+.|....|++|..+|+.+.. .++.+..+. ++.++.. ....++.+|..++..+- T Consensus 328 ~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~---t~sn~e~~~~~f~~~tL~P~~~~ie 404 (551) T protein:vir:80 328 KFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSL---NEGNSAEKNQASKNKGLQPLLGFIE 404 (551) T ss_pred eEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCccccccccccccccc---chhhHHHHHHHHHHHHHHHHHHHHH Confidence 456667777889999999999999999999999999974332 122221111 1222211 12334445555555443 Q ss_pred HHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCHHHH------------- Q lcl|Aclame:pro 422 YLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWEDEEI------------- 488 (518) Q Consensus 422 ~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~eeea------------- 488 (518) .......... ....+.++|+.....+..+.++.. ++..+|+|+.-++.+++...-..+.. T Consensus 405 ~~ln~~L~~~------~~~~~~f~f~~~~~~~~~~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~ 477 (551) T protein:vir:80 405 DFINKHIVAE------FGDKYTFQFVGGDIKSELESVKIL-AEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIG 477 (551) T ss_pred HHHHhhhccc------cCCceEEEeeccChhhHHHHHHHH-HHHhcCCcCHHHHHHHhCCCCCCCCCceeeccccccccc Confidence 3332221111 123467888877777777766654 45667999999988776411111110 Q ss_pred -------------HHHHHHHHHhccccCCCC----chh--ccCcCCCCC Q lcl|Aclame:pro 489 -------------QAEVKRIYLENAIGEVPD----PEA--IGGMETKGG 518 (518) Q Consensus 489 -------------~eev~rI~~E~~~~~~~d----p~~--~~~~~~~gG 518 (518) ++....+....+....++ |.. ..+-+++.| T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 526 (551) T protein:vir:80 478 QLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDG 526 (551) T ss_pred ccccccCcchhhhhhccccccCcCCCCCCCCCCCCCCccccCCCccccc Confidence 011111111111111111 111 011122222 No 168 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=97.07 E-value=0.00018 Score=41.06 Aligned_cols=387 Identities=13% Similarity=0.028 Sum_probs=160.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+.+ ++.+.| .+.+..+... .+........+++.... ...-+...---.+++.+|+-+ T Consensus 1 Mgl~~---~~f~~~----~~~~~~~~~~-----------~~~~~~~~~~~~g~~v~---~~~al~~~~v~~~v~~ia~~i 59 (409) T protein:vir:84 1 MSLFT---RIFSGP----SEERTLTKIS-----------GIPSPAEDWAMHGDRPG---ANSAMTLGAFYACVTLLADTV 59 (409) T ss_pred Cchhh---hhhcCC----Cccccccccc-----------ccccccchhhccCcccc---hhhhhccHHHHHHHHHHHHhh Confidence 88855 223333 1111111000 00000000011121111 111122222233455555555 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEE--CCeE-EEEEEcCCeeE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINIL--NGRP-SISVHSSSQFW 152 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d--~~~i-~i~~v~ad~~~ 152 (518) .+=|..+--. .+... ....-+..+|.. | ....-++..+...+-.|.+++.+... .|++ .+..++|+.+- T Consensus 60 A~lp~~~~~~-~~~~~--~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~ 136 (409) T protein:vir:84 60 ASLSIDAYRK-KDNVR--IPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIH 136 (409) T ss_pred hhCceEEEEe-cCCcc--cccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeE Confidence 4434332111 11111 001112222321 1 12223334455666668877665443 3443 45555555554 Q ss_pred EEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccc Q lcl|Aclame:pro 153 IDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTN 232 (518) Q Consensus 153 P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~ 232 (518) +..... .+ ..++ +..|..++ ..+ + T Consensus 137 v~~~~~-------------~~-~~~~------------------------~~~~~~~g-~~~-----~------------ 160 (409) T protein:vir:84 137 VTDAKD-------------ED-GDWI------------------------EPVYRIDG-KVV-----P------------ 160 (409) T ss_pred EEEcCC-------------Cc-ceEE------------------------EEEecCCc-eEE-----c------------ Confidence 431110 00 0001 11111110 000 0 Q ss_pred cCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCC Q lcl|Aclame:pro 233 DIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVN 311 (518) Q Consensus 233 ~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~ 311 (518) .+. +.|++....+ +..+|+|.+..+...+.....+-....+-|+.|. ++-++. .... T Consensus 161 ---~~d----------vih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~-----~~~~ 218 (409) T protein:vir:84 161 ---NHR----------IMHIKRYPVA----GCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILS-----SDAD 218 (409) T ss_pred ---hhh----------EEEecCCCCC----cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEe-----cCCC Confidence 000 2344432222 2346999998888877776665555555566644 333331 1111 Q ss_pred CCccccccCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC-ccchHH Q lcl|Aclame:pro 312 KSTDKEEWSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN-REVKAT 389 (518) Q Consensus 312 ~~~~~~~~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~-~~~TAt 389 (518) -....... ..+.......... ..--+++..++.++....+.++.+..+...+.|....|++|..++..+ +..+++ T Consensus 219 l~~e~~~~---~~~~~~~~~~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s 295 (409) T protein:vir:84 219 LTPDQVKQ---TQKQWIQSHHNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGT 295 (409) T ss_pred CCHHHHHH---HHHHHHHHhccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccc Confidence 00000000 0000000000000 000112234677777778889999999999999999999999988643 222222 Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 390 EIWSLQDA-TVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSAL 468 (518) Q Consensus 390 Ei~s~~~~-t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG 468 (518) -+...... ...++.-+...++.+|...+ ...+.+.++++.-+..|.+++++.+.+++.+| T Consensus 296 n~e~~~~~f~~~~l~P~~~~ie~~l~~~L-------------------~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G 356 (409) T protein:vir:84 296 GIEEQGINFVRHTLLPWLRCIEQALDTFL-------------------PRGQFVKFNVDGLMRGDVTARFTAYQMGLQNG 356 (409) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------cCCCeEEEechhhhccCHHHHHHHHHHHHhCC Confidence 22112111 12223333333333332211 11245778888888899999999999999999 Q ss_pred CCCHHHHHHHHcCCCCH-HHHHHHH-----HHH---HHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 469 AMSVEEKVKLIHPKWED-EEIQAEV-----KRI---YLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 469 ~~S~~~~v~~~~~~~~e-eea~eev-----~rI---~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+.-++.+++. +.. +..++-+ ..+ ...+.. .+|...+ ..+|+ T Consensus 357 ~~t~NE~R~~~g--~~p~~ggD~~~~~~n~~~~~~~~~~~~~---~~~~~~~--~~~gn 408 (409) T protein:vir:84 357 IWSVNEVRAWED--APPIPEGDIHLQPMNFVPLGYVPPEEPA---QEPQPNS--ATEGN 408 (409) T ss_pred CcCHHHHHHHhC--CCCCCCcceeeecccccccccCCccccC---cCCCCCC--ccCCC Confidence 999999877763 221 1111101 011 011100 1111111 11111 No 169 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=97.02 E-value=0.00021 Score=40.76 Aligned_cols=407 Identities=10% Similarity=-0.022 Sum_probs=154.5 Q ss_pred cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhc--cCCCCcc---ccceecCchHHHHHHHHH Q lcl|Aclame:pro 3 VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWA--QGYVPTV---HDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 3 ~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--~~~~~~~---~~~~~~~~l~~~i~~~~A 77 (518) .---+| -+|+.++--.--+..+.+.+ ... + +. ..+....|. .....+. ....+...---..++.+| T Consensus 1 ~~~~~~---~~~~~~~~~~~~~~~lf~~~-~~~-~-~~---~~~~~~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia 71 (424) T protein:vir:45 1 MLYCWW---AHWLWPEGGRVLLDALFRSK-SLE-N-PS---TPITGDAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLS 71 (424) T ss_pred CeeEee---eceecCcchhHHHHhhcccc-CCC-C-Cc---cccchhhhhhhccccCCceechHHhhccHHHHHHHHHHH Confidence 000011 12332211100001111100 000 0 00 000011110 0000111 111111111222444444 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhh--cCh--HHHHHH-HHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCe Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI--DNF--DSKSVK-IVELAGGSGVSAVKINIL-NGRP-SISVHSSSQ 150 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n~f--~~~~~~-~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~ 150 (518) +-+.+=|..+--...+. ..+..+.-+..+|.. |.+ ...+.+ .+...+-.|.+++.+..+ .|++ .+..++++. T Consensus 72 ~~iA~lp~~v~~~~~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~ 150 (424) T protein:vir:45 72 SSLAQMPLHVMRRHKGK-VEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWE 150 (424) T ss_pred HHHhhCceEEEEecCCc-eeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCce Confidence 44444354432111111 111111123333321 111 112333 444556668887766554 3443 455555555 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +.+...+++ .+|+ ++.. .+..+ T Consensus 151 v~i~~~~~~----------------~~y~-------------------------~~~~-~~~~~---------------- 172 (424) T protein:vir:45 151 TTLMNTGGR----------------YTYG-------------------------LYNE-YGAFA---------------- 172 (424) T ss_pred EEEEEcCCe----------------EEEE-------------------------EEec-CceEE---------------- Confidence 544321111 1111 1100 00000 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhccc-eeeechhhhcc Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMRE-GEKTKT-KIAASERMFRK 308 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e-~~~g~~-ri~v~~~~l~~ 308 (518) +.++ -+.|++.... +...|+|.+.-+.+.|.....+ .++... |+.|-. .-++. . T Consensus 173 ---~~~~----------eVih~r~~~~-----d~~~G~spi~~~~~~i~~~~~~-~~~~~~~f~ng~~p~gil~-----~ 228 (424) T protein:vir:45 173 ---ISPD----------DMIHIRALGN-----NQKMGLSPIMQHAETIGMGMSG-QKYTESFFSGNARPAGIVS-----V 228 (424) T ss_pred ---ECcc----------cEEEecCcCC-----CCcccccHHHHHHHHHHHHHHH-HHHHHHHHhccCCccEEEE-----e Confidence 0000 1234443322 2346999998887777654333 334333 455443 33321 1 Q ss_pred CCCCCccccccCCCcchhheeeecCCc--CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccc Q lcl|Aclame:pro 309 KVNKSTDKEEWSMNVDEDYFMQFKGTL--DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV 386 (518) Q Consensus 309 ~~~~~~~~~~~~~d~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~ 386 (518) ...-........-..-...|.+..... -.--+++..++.++....+.++++..+...+.|....|++|..++..+.+. T Consensus 229 ~~~l~~e~~~~~~~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t 308 (424) T protein:vir:45 229 KSGLNKESWGWLKDQWQKASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKAT 308 (424) T ss_pred CCCCCHHHHHHHHHHHHHHhccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC Confidence 110000000000000011121110000 000112234666666677888999999999999999999999998744331 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) -++ +.... +..++.+|...+..+.......... .......+.+.++.++.+..|.+++++.+.++++ T Consensus 309 ~sn-~eq~~----------~~f~~~tL~P~~~~ie~~ln~kLl~--~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~ 375 (424) T protein:vir:45 309 FSN-ISAQA----------IQFVRYTMMPWVTNWEQELNRRLFT--RAELAAGYYVRFNLTGLLRGTPQERAQFYHFAIT 375 (424) T ss_pred ccc-HHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCC--hhhhcCCcEEEeechhhhccCHHHHHHHHHHHHh Confidence 111 11111 1122233333333332222111110 0001112457777778888999999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETK 516 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~~~ 516 (518) +|+|+.-++.+.+. +.. +..++-+.-..-.........|...++-+.+ T Consensus 376 ~g~~T~NE~R~~~g--l~pi~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 424 (424) T protein:vir:45 376 DGWMSRNEARAFED--MNPVEGLDEMLVSVNAANPAGDFKPPKNDEGKTNE 424 (424) T ss_pred CCCcCHHHHHHHhC--CCCCCCcceeeecccccccccccCCCCCCCCCCCC Confidence 99999999776652 322 1111111100000000000111111111111 No 170 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=96.97 E-value=0.00023 Score=40.51 Aligned_cols=456 Identities=9% Similarity=0.007 Sum_probs=169.0 Q ss_pred HHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCc-- Q lcl|Aclame:pro 7 MTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKP-- 84 (518) Q Consensus 7 ~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~-- 84 (518) |+..+++=|+-. ++ ..+....++..+-...+.+=......+....++-=+.+...++.+|+-|.+-. T Consensus 1 mk~~~~~~~~~l------kr-----~~~e~~w~e~a~~tlP~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ltp 69 (510) T protein:vir:78 1 MKSTAAMLWEKL------RD-----GSVEQRAIEFAKTTLPYLMVDPMSGSRGVVEHDFQSAGALLVNNLAAKLARSLFP 69 (510) T ss_pred ChhHHHHHHHHH------hc-----cchHHHHHHHHHhhccccccCCCCcccccccCcccchHHHHHHHHHHHHHHhhcC Confidence 777776655311 11 11111111111111111110000011111111111235556666666555442 Q ss_pred ---ceEEecccccc---------c----h---HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEE Q lcl|Aclame:pro 85 ---LSIDVTGVNGS---------K----D---ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISV 145 (518) Q Consensus 85 ---~~i~v~~~~~~---------~----d---~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~ 145 (518) +=+.+...+.. + + +.....+...+..++|+..+.+++....+.|.+++ |.+.+...+.. T Consensus 70 p~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~~~~~~~~~~ 147 (510) T protein:vir:78 70 TGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALL--YRNSDEATVVA 147 (510) T ss_pred CCCcccccCCChHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEE--EEeCCCCeEEE Confidence 22333222210 0 0 11223455568889999999999999999998765 44443334555 Q ss_pred EcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccc Q lcl|Aclame:pro 146 HSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQ 224 (518) Q Consensus 146 v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~ 224 (518) ++-..|+-.-+ +|++..+++-.++....-..-|-. +... ......-+....|.+.+|+-+..+. +. ... T Consensus 148 ~pl~~y~v~~d~~G~vd~i~rr~~~t~~~l~~~~~~-~~~~---~~~~~~~~~~v~v~~~V~~~~~~~~-~~-----~sv 217 (510) T protein:vir:78 148 WSLRSYAVRRDATGRWMDIVLKQRYKSKDLDDVYKQ-DLMR---AGRNLSGSGSVDLYTHVQRRKGTAM-DY-----AEM 217 (510) T ss_pred EEcceeEEeeCCCcCeeEEEeeeeccHHHHHHHhhH-Hhhh---hhhccCCCceEEEEEEEEeecCCCC-cE-----EEE Confidence 66566555432 366555443322221000000000 0000 0000001112234444444322110 00 000 Q ss_pred cccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhccceeeech Q lcl|Aclame:pro 225 ITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR-EGEKTKTKIAASE 303 (518) Q Consensus 225 ~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~-e~~~g~~ri~v~~ 303 (518) ...+ +...+..+.... -...|+++.-- + ...++.||+|--..+.+-++.|+..--.... .....+....|++ T Consensus 218 ~~e~-dg~~i~~~~~~~-~~e~P~~~~Rw----~-~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~~~lv~p 290 (510) T protein:vir:78 218 YHEI-DGVRVGETGRWP-IHLCPYIVPTW----N-LAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEVLNLVDE 290 (510) T ss_pred EEEe-cCeeeccccccc-cccCCeeeeee----e-ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCC Confidence 0000 000000000000 01123332211 2 2346788999999999999999876444433 3444444444433 Q ss_pred -hhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEec----ccccHHHHHHHHHHHHHHHHHHhCCCccc Q lcl|Aclame:pro 304 -RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQ----GDFRDGSYRETMEYFAQKAVSKSGYNPAT 378 (518) Q Consensus 304 -~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~----~~ir~~~~~~~i~~~l~~i~~~~G~s~~t 378 (518) .++.... ..+.....+. +|.. +.++.++ .++.+ -.+.|+.+-+.|.... + .+ T Consensus 291 ~g~~~~~~---------l~~~~~g~~v-------~g~~--~~v~~~~~~~~~d~~~--~~~~i~~~~~rI~~aF-~--~~ 347 (510) T protein:vir:78 291 AKGAVVDD---------YQDAEMGDYV-------PGGA--EAVRAYERGDYNKMAA--IQQSLQAVVVRLNQAF-M--YG 347 (510) T ss_pred ccccchhh---------hccCCCceee-------cCCc--ccccccccCcccchHH--HHHHHHHHHHHHHHHH-h--hc Confidence 2221110 0111111111 1111 1122222 23332 2233333333333221 1 01 Q ss_pred c-ccCCccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccCCCcCCceee-EEEeCCCCCCCH- Q lcl|Aclame:pro 379 F-NLGNREVKATEIWSLQDATVRKIEKKKRL-IQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRV-IIEFPDPMSVNL- 454 (518) Q Consensus 379 f-~~d~~~~TAtEi~s~~~~t~~t~~~~~~~-~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v-~v~f~D~i~~d~- 454 (518) + ..++..+|||||..+.+...+...-.-.. -.+.|..++.-++.+..... ... .+.+...+ .|++-..+.... T Consensus 348 l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g--l~p-~p~~~~~~~~v~~is~Laraq~ 424 (510) T protein:vir:78 348 ANQRDAERVTAEEVRITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDDAL--LQG-LITKQHKPAIETGLPALSRSAA 424 (510) T ss_pred cccCCCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc--CCC-CCcccccceeeecccHHHHHHH Confidence 1 12455689999988887766665543333 23345556666555543221 111 12222222 223222221111 Q ss_pred -HHHHHHHHHHHhCCC-------CCHHHHHHHHc--CCC-------CHHHHHHHHHHHH-HhccccCCCC--chhccCc- Q lcl|Aclame:pro 455 -NELSSTLNNMNSALA-------MSVEEKVKLIH--PKW-------EDEEIQAEVKRIY-LENAIGEVPD--PEAIGGM- 513 (518) Q Consensus 455 -~~~~~~~~~~~~aG~-------~S~~~~v~~~~--~~~-------~eeea~eev~rI~-~E~~~~~~~d--p~~~~~~- 513 (518) +......+.+...+. +....+++.+- -+. ++||++++.++-. +++.+...+. ....+.. T Consensus 425 ~~~l~~~~q~l~~~~~~~q~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~~q~~~~~~~~~a~~~~~~~~~ 504 (510) T protein:vir:78 425 VQSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEEQRRQAAQAQAAQETLLEGASDMT 504 (510) T ss_pred HHHHHHHHHHHHHhcChhhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc Confidence 111111111111111 22444444331 122 4566555443221 1110100000 1111111 Q ss_pred CCCCC Q lcl|Aclame:pro 514 ETKGG 518 (518) Q Consensus 514 ~~~gG 518 (518) +...| T Consensus 505 ~~~~g 509 (510) T protein:vir:78 505 NALAG 509 (510) T ss_pred ccCCC Confidence 23333 No 171 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=96.94 E-value=0.00025 Score=40.37 Aligned_cols=452 Identities=10% Similarity=-0.002 Sum_probs=180.1 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |-.-.-...+-+.=. ...++.+...+..+....++..+-...+.+=......+.+..++-=+-+...++.+|+-| T Consensus 1 ~~~~~~~~~~~~~~~-----~~r~~~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l 75 (535) T protein:vir:94 1 MASSQKREGFAENGA-----KAVYDALKNDRNSYETRAENCAKYTIPSLFPKDSDNASTDYTTPWQAVGARGLNNLASKL 75 (535) T ss_pred CCchhhhhhHHHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHhccccCCCCCCccccccCCcccccHHHHHHHHHHHH Confidence 432222111110000 001122222222222222222222222111111112222223343445667777777666 Q ss_pred cCCc----ceEEecccccc-------ch--HHHHHHH-------HHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe Q lcl|Aclame:pro 81 SGKP----LSIDVTGVNGS-------KD--ENLTKQL-------KEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR 140 (518) Q Consensus 81 ~~e~----~~i~v~~~~~~-------~d--~~~~~~l-------~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~ 140 (518) ++-. +=+.+...+.. .. ...++.| ...+..++|+..+.+++....+.|.+++..-.+.++ T Consensus 76 ~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~ 155 (535) T protein:vir:94 76 MLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGNALLYIPEPEGT 155 (535) T ss_pred HhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeccCcCc Confidence 5542 23333222210 00 1233333 445778999999999999999999998865444333 Q ss_pred -EEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEe--------------cC-----ceEEEEEEEEeecccceeeeeeccce Q lcl|Aclame:pro 141 -PSISVHSSSQFWIDFK-NNEPFRFNFFEEIPT--------------SN-----KADIYYLVESREIKQWDKEGKKLSGG 199 (518) Q Consensus 141 -i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~--------------~~-----~~~~y~~lE~he~~~~~~~~~~~~~~ 199 (518) +.+..++-..|+-.-+ +|++..+++-..+.. .+ ...+|++.... ..+++| T Consensus 156 ~~~f~~~pl~~y~v~~d~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~v~~~---------~~~~~~ 226 (535) T protein:vir:94 156 YNPMKLYRLSSYVVQRDAFGTVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYTHIYLD---------EESGEY 226 (535) T ss_pred ccceEEEEcCeEEEeeCCCCCeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEEEEEee---------CCCCcE Confidence 4566677777666533 477666654332221 00 01122222111 111222 Q ss_pred EEEEEEEeccCCccccccccccccccccccccccCcccceeecCC-CcceEEEecCcccCccccCCCCCcchhhhhHHHH Q lcl|Aclame:pro 200 FVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGL-KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYL 278 (518) Q Consensus 200 ~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~-~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i 278 (518) .+.+++ .+..+... + -..|. ..|+++.--+ ...++.||+|--..+.+-+ T Consensus 227 ~~~~e~----~g~~~~~~------------------~---~~~g~~~~P~~~~Rw~-----~~~ge~YGrgp~~~~l~D~ 276 (535) T protein:vir:94 227 LKYEEI----DGVEVEGT------------------D---ASYPVDACPYIPVRMV-----RIDGESYGRSYCEEYLGDL 276 (535) T ss_pred EEEEEe----cCeeeccc------------------c---ccCccccCCceeeeee-----ecCCCccccchHHHHHHHH Confidence 221111 01000000 0 01111 1223222112 2336778999999999999 Q ss_pred HHHHHHHHHHHH-HHHhccceeee-chhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHH Q lcl|Aclame:pro 279 FAVDYFFTVYMR-EGEKTKTKIAA-SERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGS 356 (518) Q Consensus 279 ~~lD~~~s~~~~-e~~~g~~ri~v-~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~ 356 (518) +.|+..--.... .....+....| |+..++...- .+.....++. +..+...+..+....+... T Consensus 277 k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~~~~---------~~~~~g~~v~-------g~~~~v~~~~~~~~~~~~~ 340 (535) T protein:vir:94 277 RSLENLQEAIVKMSMISAKVIGLVNPAGITQVRRL---------TKAQTGDFVS-------GRPEDISFLQLEKAADFSV 340 (535) T ss_pred HHHHHHHHHHHHHHHHhccCCcccccccccchhhc---------ccCCCceeec-------CCcccceeeecccccchhH Confidence 999865443333 22333333333 3333322210 0111111211 1111111222333333333 Q ss_pred HHHHHHHHHHHHHHHhCCCccccc-cCCccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccCC Q lcl|Aclame:pro 357 YRETMEYFAQKAVSKSGYNPATFN-LGNREVKATEIWSLQDATVRKIEKKKRLIQ-NVYEQMLWDFLYLLTGGTNNKEKA 434 (518) Q Consensus 357 ~~~~i~~~l~~i~~~~G~s~~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~-~~l~~li~~il~l~~~~~~~~~~~ 434 (518) -.+.|+.+-+.|.... + ...+. .++..+|||||..+.+...+...-.-..+. +.|..++..++.+.... ..... T Consensus 341 ~~~~i~~~~~rI~~af-~-~~~~~~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~--g~lP~ 416 (535) T protein:vir:94 341 ARAVSEQIEGRLSYAF-M-LNSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPMVRVLLKQLQAT--NQIPE 416 (535) T ss_pred HHHHHHHHHHHHHHHH-h-HhhhccCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhC--CCCCC Confidence 4445555544444333 1 00122 245568999998888776666554444433 34555666666554322 11122 Q ss_pred CcCCceeeEEEeCCCCCC-----CHHHHHHHHHHHHhCC------CCCHHHHHHHH---c--C--C--CCHHHHHHHHHH Q lcl|Aclame:pro 435 IMRDEIRVIIEFPDPMSV-----NLNELSSTLNNMNSAL------AMSVEEKVKLI---H--P--K--WEDEEIQAEVKR 494 (518) Q Consensus 435 ~~~~~~~v~v~f~D~i~~-----d~~~~~~~~~~~~~aG------~~S~~~~v~~~---~--~--~--~~eeea~eev~r 494 (518) .++.-+.+++--++.. +-+...+..+.+.+.+ .+....+++.+ . | . -+++|++++.++ T Consensus 417 --~p~~~v~~~~vs~la~l~r~~~~~~l~~~~~~laq~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~eev~~~~~q 494 (535) T protein:vir:94 417 --LPKEAVEPTISTGMEALGRGQDLDKLERCIAAWSALAPMQGDPDINIATIKLRIANAIGIDTSGILKTPEEKQQEMAE 494 (535) T ss_pred --CChhhccceEeehHHHHHHHHHHHHHHHHHHHHHhhChHHhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHH Confidence 2222344444322211 0111111111111111 12344444433 1 1 1 256666666655 Q ss_pred HHHhccccCC--CCchhccCcCCCCC Q lcl|Aclame:pro 495 IYLENAIGEV--PDPEAIGGMETKGG 518 (518) Q Consensus 495 I~~E~~~~~~--~dp~~~~~~~~~gG 518 (518) .++.+++... +-....++.-.... T Consensus 495 ~~~~~~~~~~~~~~g~~~~~~~~~~~ 520 (535) T protein:vir:94 495 AAQGTAMQNAAASAGAGAGTMATASP 520 (535) T ss_pred HHHHHHHHHHHHHHHHhhhcccccCh Confidence 4433322111 11111111111111 No 172 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=96.70 E-value=0.0004 Score=39.19 Aligned_cols=421 Identities=12% Similarity=0.051 Sum_probs=203.3 Q ss_pred CCcCchHHHHHHHHhcCCCCh-hhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNG-SEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) |...-.=.-++.+.+.+++.. .+.++|.+|+.+.. .++.. . +|-+-.-+. T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~YR~ma~--~pEvd-~--------------------------Av~eIvnea 97 (521) T protein:vir:10 47 IDTTAPKTAIVQSVLGYAPKIQNTKDLINQYRSLSK--YHEVD-N--------------------------AIDEIINDA 97 (521) T ss_pred CCccccccchhhhhhccccccchHHHHHHHHHHHhh--ccchh-h--------------------------HHHhhhcce Confidence 222222233345556665553 35677777766531 11110 0 000000111 Q ss_pred H----cCCcceEEeccccccc--hHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe-----EEEEEEcC Q lcl|Aclame:pro 80 I----SGKPLSIDVTGVNGSK--DENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR-----PSISVHSS 148 (518) Q Consensus 80 l----~~e~~~i~v~~~~~~~--d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~-----i~i~~v~a 148 (518) + ..+|..+.+...+.++ .++..+.++.|+.--+|..+..+.+..+-+-|.++|...+|.++ ..+.+++| T Consensus 98 iv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDP 177 (521) T protein:vir:10 98 IVQEDNRDTVYLDLDKTDWNESVKEMVREEFRTILKLLKFEREGKRHFRRWYVDSRIYFHKMIDPARPKDGIKELRLLDP 177 (521) T ss_pred EEecCCCceEEEEecCcccchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeeEEEEEEeeCCCccccceeeeeeCC Confidence 1 1224445554433222 34566777888888889999999999999999999998887432 34666666 Q ss_pred CeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccc Q lcl|Aclame:pro 149 SQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSY 228 (518) Q Consensus 149 d~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~ 228 (518) -++-+. +++.+.+...++- -+++-.+-+|........... +.. T Consensus 178 r~i~~v------------r~i~k~~~~~~~v-----------------~~~~~e~f~Y~~~~~~~~~~~----g~~---- 220 (521) T protein:vir:10 178 RNVEYY------------RVNLKSNENGNDV-----------------YKGVKEFFTYGATEDNRYNIS----GNS---- 220 (521) T ss_pred cceeee------------eeecCCCCCcchh-----------------hccceeeeeeccCCCceecCC----CCC---- Confidence 555442 2222111111100 011122334431111000000 000 Q ss_pred cccccCcccceeecCCC--cceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH--HHHHHhccceeee-ch Q lcl|Aclame:pro 229 LHTNDIQLNHSVSIGLK--SMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY--MREGEKTKTKIAA-SE 303 (518) Q Consensus 229 ~~~~~~~~~~~~~tg~~--~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~ 303 (518) .++.+ .-.++|..- --.+..++..+|-+..|+-.+..|=-.-+.+ .|-.|+-++|||- +- T Consensus 221 ------------~~~vkI~~daI~y~hS---GL~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDv 285 (521) T protein:vir:10 221 ------------NNLVQIPIDAIVYSHS---GKVDIDGKTIVGYLHNVIKPANQLKMLEDAMVIYRITRAPERRVFYIDV 285 (521) T ss_pred ------------Ccceeechhheeeecc---cceeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEec Confidence 01110 011222211 1134445678888888888777774444433 2444566677763 11 Q ss_pred hhhccC------------------CCCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHH Q lcl|Aclame:pro 304 RMFRKK------------------VNKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETM 361 (518) Q Consensus 304 ~~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i 361 (518) .=|++. -+..++. -.+++.++.+..++. .|+.+ ..|+.+ |..+--.-.+.+ T Consensus 286 Gnlpk~KAeqYl~~iM~k~kNklVYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrg-TEI~TL-pggqnlgem~DV 358 (521) T protein:vir:10 286 GTMPNKKATQHLNNVMQGLKNRVVYDSSTGK-----VKNSSNNLAMTEDYWLMRRDGKAT-TEVSTL-PGAQSMGEMDDV 358 (521) T ss_pred CCCCchhHHHHHHHHHHhcCceEEEeccCce-----eccchhhhhhHhhhcccccCCCCc-cceeec-cccCCcChHHHH Confidence 111110 0111111 022334444333322 12222 223322 233323345666 Q ss_pred HHHHHHHHHHhCCCccccccCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCC Q lcl|Aclame:pro 362 EYFAQKAVSKSGYNPATFNLGNRE---VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRD 438 (518) Q Consensus 362 ~~~l~~i~~~~G~s~~tf~~d~~~---~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~ 438 (518) ..+.+.+....+.+.+-+..++++ .-++||....-+-...+.+.|..+..-+.++++.=|-|-.-. .. .-...- T Consensus 359 ~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItRDEikF~KFI~rLR~rFs~~f~~~L~~qLilKgii-t~--eew~~i 435 (521) T protein:vir:10 359 RWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITRDELQFTKYIRGLQQQFEPIFLNPLRTNLMLKGKM-SV--SEWEEQ 435 (521) T ss_pred HHHHHHHHHHhCCCccccCCCCCceecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CH--HHHHHH Confidence 777788888888888777655321 124666666555555666666666666666665544331100 00 000001 Q ss_pred ceeeEEEeCCCCCCCHH-------HHHHHHHHH----HhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCc Q lcl|Aclame:pro 439 EIRVIIEFPDPMSVNLN-------ELSSTLNNM----NSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDP 507 (518) Q Consensus 439 ~~~v~v~f~D~i~~d~~-------~~~~~~~~~----~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp 507 (518) ...|.++|...-.-.+. +++..++.+ +-+...|.++..+.. -..+|++.+++-+.|++|....--++| T Consensus 436 ~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~yvGky~s~dyi~k~I-Lr~tDeeik~~~k~I~~E~~~~~~~~p 514 (521) T protein:vir:10 436 AENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEVTGKYLSHEYVMKNI-LRMSDEDIKTEREKIDGELKDSVYKNP 514 (521) T ss_pred hhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccccccccchHHHHHHH-hcCCHhHHHHHHHHHHHhhhCCCCCCC Confidence 13466777633322222 233333433 223367888876665 468999999999999999877644444 Q ss_pred h-hccCc Q lcl|Aclame:pro 508 E-AIGGM 513 (518) Q Consensus 508 ~-~~~~~ 513 (518) . ..+.| T Consensus 515 ~~e~~df 521 (521) T protein:vir:10 515 EDPMEEF 521 (521) T ss_pred cchhhcC Confidence 3 22445 No 173 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=96.70 E-value=0.0004 Score=39.19 Aligned_cols=403 Identities=10% Similarity=0.019 Sum_probs=162.0 Q ss_pred cCchHHHHHHHHhcCCCChhhHHhhHHH-HhhccchhhhhhhhhhhhhhhccCCCCccccce-ecCchHH--HHHHHHHH Q lcl|Aclame:pro 3 VWSVMTRFIKGWLNGKPNGSEPELIPKY-LPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKL-MNSGTGN--EIVVVAAE 78 (518) Q Consensus 3 ~~~~~~~~~~~w~~g~p~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~l~~--~i~~~~A~ 78 (518) .--.|.+.+.. -.+-|.. . +..+ .+.+. -......+.|+|..+..+..-.. -.+..+. .+++.+|+ T Consensus 1 ~~~~l~~~~~~-~~~~~~~-~---~~~~~~~~~~-----~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~ 70 (434) T protein:vir:43 1 MSKSLGKVLSS-ATSAPRS-S---LFGWGGKTIR-----LTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLIST 70 (434) T ss_pred Cccchhhhhhh-cccccch-h---hhcccccccc-----cCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHH Confidence 12222222211 0011100 0 0000 00000 00111122344443322221100 0122222 34555665 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHhh--cCh---HHHHHHHHHHHHhhCCEEEEEEEECCeE-EEEEEcCCeeE Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRI--DNF---DSKSVKIVELAGGSGVSAVKINILNGRP-SISVHSSSQFW 152 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n~f---~~~~~~~~e~~~a~G~~~~k~~~d~~~i-~i~~v~ad~~~ 152 (518) -|.+=|..+--...++...+..+-.+..+|.. |.+ ..-.+..+...+-.|.+++.+..++|++ .+..++|+.+- T Consensus 71 ~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~~G~~~~L~~l~p~~v~ 150 (434) T protein:vir:43 71 SVAGLPLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRAAGRPAALDFLLPSRVD 150 (434) T ss_pred hhhhCceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCCCcEEEEEEEcCcceE Confidence 55544444311111111111111223333321 221 1223334445666688877776666664 35555666655 Q ss_pred EEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 153 IDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 153 P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) |... +|. ++ |..+..+ +..+. + T Consensus 151 ~~~~~~g~-----------------~~------------------------y~~~~~~-g~~~~---------~------ 173 (434) T protein:vir:43 151 LECDENGR-----------------LK------------------------YFYTTKK-GARRE---------I------ 173 (434) T ss_pred EEEcCCCe-----------------EE------------------------EEEEecC-ceEEE---------E------ Confidence 5321 111 11 1111100 00000 0 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhccCC Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRKKV 310 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~~~ 310 (518) ... -+.|++....+ ..+|+|...-+...+......-.-...-|+.|.. .-++ .... T Consensus 174 ---~~~----------eVih~~~~~~d-----g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil-----~~~~ 230 (434) T protein:vir:43 174 ---ERT----------NMLHIPAFTLD-----GRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAF-----KVDR 230 (434) T ss_pred ---ccc----------cEEEecCcCCC-----CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE-----ecCC Confidence 000 02344433222 2459998887777766554333333333555443 2222 1111 Q ss_pred CCCccccccCCCcchhheeeecCCcCC----CCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc- Q lcl|Aclame:pro 311 NKSTDKEEWSMNVDEDYFMQFKGTLDA----GAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE- 385 (518) Q Consensus 311 ~~~~~~~~~~~d~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~- 385 (518) .-...... .+ ++.+....+.... --+++..++.++....+.++++..+...+.|....|++|..++..+++ T Consensus 231 ~l~~e~~~-~~---r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~ 306 (434) T protein:vir:43 231 ILQPAQRE-EF---REYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGS 306 (434) T ss_pred CCCHHHHH-HH---HHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCc Confidence 10000000 00 0111111110000 012233567777777889999999999999999999999999874432 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) .+.+-+..... ..+..+|..++..+-....... ........+.+.+++++.+..|.+++++.+.+++ T Consensus 307 ~~~s~~e~~~~----------~f~~~~L~P~~~~ie~~ln~kL---~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~ 373 (434) T protein:vir:43 307 NWGTGLEQQML----------AFLTFSISSITNQIQQCVNKRL---LTAPERIRYYAEFSLEGFLKADSAGRAAWYSTMA 373 (434) T ss_pred cccchHHHHHH----------HHHHHHHHHHHHHHHHHHHhhc---CChhhhcCceEEEechhhhccCHHHHHHHHHHHH Confidence 22222211111 1122333333333322221111 1111112345777777888899999999999999 Q ss_pred hCCCCCHHHHHHHHcCCCCH-HHHHH--------HHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIHPKWED-EEIQA--------EVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~~~~~e-eea~e--------ev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+|+|+.-++.+++. +.. +..++ -+..+.+.+.. .+......+..|- T Consensus 374 ~~G~~T~NE~R~~~g--l~p~~ggD~~~~~~n~~~~~~~~~~~~~----~~~~~~~~~~~~~ 429 (434) T protein:vir:43 374 QNGFMTRNEGRRKEN--LPELPGGDILTVQSNLVPIDQLGQSNKS----QAVRAALMNWFSQ 429 (434) T ss_pred hCCCcCHHHHHHHhC--CCCCCCCCeEeeccCccchhhhhccCCC----cchhhhhhccCCC Confidence 999999999877652 211 01100 01111111100 0000111111111 No 174 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=96.64 E-value=0.00044 Score=38.97 Aligned_cols=396 Identities=11% Similarity=0.051 Sum_probs=162.8 Q ss_pred cccceecCchHHHHHHHHHHHHcCCcceEEeccccc--cchHHHHHHHHH-HHhh--c-----------ChHHHHHHHHH Q lcl|Aclame:pro 59 VHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNG--SKDENLTKQLKE-ALRI--D-----------NFDSKSVKIVE 122 (518) Q Consensus 59 ~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~--~~d~~~~~~l~~-vl~d--n-----------~f~~~~~~~~e 122 (518) .+.=..+-+....+++.+|+-+.+=|..|....... ......-+.+.. ++.. | .+...++..+. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 100011234566677777777766665553221111 111111111211 1211 1 12344556677 Q ss_pred HHHhhCCEEEEEEEEC-CeE-EEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceE Q lcl|Aclame:pro 123 LAGGSGVSAVKINILN-GRP-SISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGF 200 (518) Q Consensus 123 ~~~a~G~~~~k~~~d~-~~i-~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~ 200 (518) ..+..|.+++.+..+. |++ .+..++++.+-+.-...+.+ ...+...+|+.. +....... +.+. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~--------~~~~~~~~~~~~----~~~~~~~~---~~~~ 145 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFV--------QLLEEKEKYFGV----AGDRYQTN---GNGD 145 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeE--------eecCCceeeEEe----ccccceee---cccc Confidence 7788899998877653 554 57777777776652221111 000111122110 00000000 0000 Q ss_pred EEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHH Q lcl|Aclame:pro 201 VTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFA 280 (518) Q Consensus 201 I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~ 280 (518) +.+..+....... . . . .. .+.--+.|++...+ .+..+|+|.+..+...+. T Consensus 146 ~~~~~~~~~~~~~--~------~-------------~-~~---~~~~diih~r~~~~----~~~~~G~s~~~~~~~~i~- 195 (467) T protein:vir:31 146 LDPVFVDADDGST--G------T-------------S-VS---NPANELIFKRNHSP----LYPHYGAPDIIPAVKTIR- 195 (467) T ss_pred eeeeeeeeccccc--c------c-------------e-eE---eccccEEEecCCCC----CCCcccccHHHHHHHHHH- Confidence 1110000000000 0 0 0 00 00011334443211 123469999998888775 Q ss_pred HHHHHHHHHHH-HHhccc-e--eeechhhhccCCCCCccccccCCC-----cchhheeeecCC--------cCCCCCC-C Q lcl|Aclame:pro 281 VDYFFTVYMRE-GEKTKT-K--IAASERMFRKKVNKSTDKEEWSMN-----VDEDYFMQFKGT--------LDAGAKL-N 342 (518) Q Consensus 281 lD~~~s~~~~e-~~~g~~-r--i~v~~~~l~~~~~~~~~~~~~~~d-----~d~~~~~~~~~~--------~~~~~~~-~ 342 (518) ++.+...+... |+.|.. . +.++...+...... ..+-.+. ..+..+....+. ...+.+. . T Consensus 196 ~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~---~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~ 272 (467) T protein:vir:31 196 GDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGRE---EMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSD 272 (467) T ss_pred HHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHH---HHHHHHHhhhcchhhhhhhhhcccccccccccccCCCcccc Confidence 35555555554 465543 2 22333332111000 0000000 000000000000 0000000 0 Q ss_pred ccc--eEecc-cccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 343 DMI--QFMQG-DFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWD 419 (518) Q Consensus 343 ~~i--~~~~~-~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~ 419 (518) ..+ +.++. ...+.++.+..+...+.|....|++|..+|+.++.-+++-+....... ++.+|..++.. T Consensus 273 ~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~~~s~~e~~~~~f----------~~~~l~P~~~~ 342 (467) T protein:vir:31 273 VEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGAFSTDAEEQRKEF----------AEETIQPKQHD 342 (467) T ss_pred cceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCcccCHHHHHHHH----------HHHHHHHHHHH Confidence 111 22222 234677888888888899999999999988743332222221111111 11222222222 Q ss_pred HHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcC-CCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 420 FLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHP-KWEDEEIQAEVKRIYLE 498 (518) Q Consensus 420 il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~-~~~eeea~eev~rI~~E 498 (518) +.......... .......+.+.+++......|.+++++....++.+|+|+..++.+++.. ...|+.... ..-+..+ T Consensus 343 ie~~ln~~l~~--~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~Gl~pi~d~~~~~-~~~~~~~ 419 (467) T protein:vir:31 343 FGELLYELVHK--QGLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDEFGFEPFPEEHVYG-GETLVAE 419 (467) T ss_pred HHHHHHHhhcc--hhhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCcccccC-Ccccccc Confidence 22221111100 1112234568888899999999999999999999999999998877622 232221100 0000000 Q ss_pred -ccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 499 -NAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 499 -~~~~~~~dp~~~~~~~~~gG 518 (518) ++... |....+-+.+++ T Consensus 420 ~~~~~~---~~~~~~~~~~~~ 437 (467) T protein:vir:31 420 VTGGSG---PGGGIGDQIEQL 437 (467) T ss_pred cccccC---CCCcccCcCCCC Confidence 00000 110011111111 No 175 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=96.61 E-value=0.00047 Score=38.84 Aligned_cols=394 Identities=8% Similarity=-0.002 Sum_probs=160.5 Q ss_pred chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHHHHHHHHHHc Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEIVVVAAEYIS 81 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i~~~~A~ll~ 81 (518) |= ++-|..-.....+ ...+........|=+.....+. ....+..+---..++.+|+-|. T Consensus 1 m~----~~~~f~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia 62 (416) T protein:vir:12 1 ML----LERMFEKRSGSSD--------------HEDGFNNILLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDDIA 62 (416) T ss_pred Cc----cchhcccccCccc--------------cCccchhHHHHhhcCcccccCceechhhhhccHHHHHHHHHHHHhhh Confidence 22 2223211100000 0000000001111111111111 0111111111234555555554 Q ss_pred CCcceEEeccccccchHHHHHHHHHHH-hh-c---ChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEE Q lcl|Aclame:pro 82 GKPLSIDVTGVNGSKDENLTKQLKEAL-RI-D---NFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWID 154 (518) Q Consensus 82 ~e~~~i~v~~~~~~~d~~~~~~l~~vl-~d-n---~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~ 154 (518) +=+..+--...+ +..+...--+..+| .. | ....-.+..+...+-.|.+++.+..+ .|++ .+-.++++.+-+. T Consensus 63 ~l~~~~~~~~~~-~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~ 141 (416) T protein:vir:12 63 KLPIHTYKRTDG-GIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAY 141 (416) T ss_pred hCceEEEEecCC-ccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEE Confidence 444333211111 11111000112222 11 1 11223344455666678877766654 3443 3555555555443 Q ss_pred EEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccC Q lcl|Aclame:pro 155 FKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) Q Consensus 155 ~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (518) ... +...+|+. +..+ +..+. + T Consensus 142 ~~~---------------~~~~~~~~-------------------------~~~~-g~~~~---------~--------- 162 (416) T protein:vir:12 142 VHP---------------TTGMLWYQ-------------------------TVLN-GKAIE---------L--------- 162 (416) T ss_pred EeC---------------CCcEEEEE-------------------------EecC-CeEEE---------e--------- Confidence 211 11111111 0000 00000 0 Q ss_pred cccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCCC Q lcl|Aclame:pro 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNKS 313 (518) Q Consensus 235 ~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~~ 313 (518) ... -+.|+++... +.+.|+|.+.-+...++....+-.....-|+.|. ++.++.- ...-. T Consensus 163 ~~~----------eiih~~~~~~-----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~-----~~~~~ 222 (416) T protein:vir:12 163 YDY----------EVLHFKGLST-----DGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKV-----PAFLD 222 (416) T ss_pred cCc----------cEEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEec-----CCCCC Confidence 000 0233443322 2357999998888888775544444444456644 3333321 11000 Q ss_pred ccccccCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-ch-HHH Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VK-ATE 390 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~T-AtE 390 (518) .. . ...-.+.|....... -.--+++..++.++....+.++++..+...+.|....|++|..++..+++ .+ +.+ T Consensus 223 ~e-~---~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~ 298 (416) T protein:vir:12 223 EK-P---KENVRKEWKRVNKVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEH 298 (416) T ss_pred HH-H---HHHHHHHHHHHhcCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHH Confidence 00 0 000011111111000 00011223567777778889999999999999999999999999864332 22 222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 391 IWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAM 470 (518) Q Consensus 391 i~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~ 470 (518) . .. ..++.+|..++..+.......... .......+.+.+++++-+..|.+++++.+.+++.+|+| T Consensus 299 ~---~~----------~f~~~~l~P~~~~ie~~l~~~l~~--~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~ 363 (416) T protein:vir:12 299 Q---SI----------EYVRNTLQPWIVNFEQELNVKLFL--DHDQKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVL 363 (416) T ss_pred H---HH----------HHHHHHHHHHHHHHHHHHHHhhcC--chhhcCCceEEeechhhhccCHHHHHHHHHHHHhCCCc Confidence 1 11 122233333333332222211100 00111234577888888899999999999999999999 Q ss_pred CHHHHHHHHcCCCCH-HHHHHHHHH-----H--HHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 471 SVEEKVKLIHPKWED-EEIQAEVKR-----I--YLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 471 S~~~~v~~~~~~~~e-eea~eev~r-----I--~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +.-++.+++. +.. +..++-+.. + ..|+......... -||-+...| T Consensus 364 T~NE~R~~~g--l~Pi~ggd~~~~~~n~~~~~~~~~~~~~~~~~~~-~gge~~~~g 416 (416) T protein:vir:12 364 NKDEIRELLE--RNPIENGDKYISSLNYVFLDFLEEYQRLKAGGAM-KGGDNKNEG 416 (416) T ss_pred CHHHHHHHhC--CCCCCCcceeeeccccccccccchhhcccccccc-CCCCCcCCC Confidence 9999887763 211 111111000 0 0111111000011 122232233 No 176 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=96.61 E-value=0.00047 Score=38.81 Aligned_cols=385 Identities=13% Similarity=0.019 Sum_probs=155.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc--c-cceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV--H-DKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~-~~~~~~~l~~~i~~~~A 77 (518) ||+++.+..+- ..+.....+. +...+++..+.... . ...+..+.-..+++.+| T Consensus 1 Mg~f~~~~~~~--------~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia 56 (406) T protein:vir:95 1 MGLFDRWRRTK--------RKSKIRADTG----------------YVGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIA 56 (406) T ss_pred Ccchhhhcccc--------ccccccccch----------------hhhhhccCcccCccccCHHHHhhcHHHHHHHHHHH Confidence 99886443221 1000000111 11112211111110 0 11122234455666677 Q ss_pred HHHcCCcceEEecccccc--chHHHHHHHHHHHh-hcChHHHHHHHHHHHHhhCCEEE--EEEEE-CCeE-EEEEEcCCe Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGS--KDENLTKQLKEALR-IDNFDSKSVKIVELAGGSGVSAV--KINIL-NGRP-SISVHSSSQ 150 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~--~d~~~~~~l~~vl~-dn~f~~~~~~~~e~~~a~G~~~~--k~~~d-~~~i-~i~~v~ad~ 150 (518) +-+..=+..+--...+.. .+..+...|..--. .-.....++..+...+..|.+.. -+..+ .|++ .+-.++|+. T Consensus 57 ~~ia~~~~~~~~~~~~~~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~ 136 (406) T protein:vir:95 57 DLISSMTIYLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSK 136 (406) T ss_pred HhhccCceEEEEecCCcceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCce Confidence 776554433311111110 01111111111000 11222333344444555564432 22222 2332 233344443 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +-+....+ .|.+++ . +... T Consensus 137 v~~~~~~~---------------------------------------~~~~~~---~---~~~~---------------- 155 (406) T protein:vir:95 137 VNFLDTPD---------------------------------------GYQVLY---G---GQTF---------------- 155 (406) T ss_pred eEEEEcCC---------------------------------------eEEEEe---c---cEEE---------------- Confidence 33321110 111111 0 0000 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCC Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKV 310 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~ 310 (518) ... -+.|++.. .+.. +.-.|+|.+.-+...+.....+-.....-|+.|...-.+ +.... T Consensus 156 ----~~~----------evih~~~~-~~~~--~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~i----l~~~~ 214 (406) T protein:vir:95 156 ----NYD----------EVLHFIYN-PDPE--RPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLI----VKVDA 214 (406) T ss_pred ----chh----------HEEEeecc-CCCC--CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceE----EEeCC Confidence 000 02333321 1111 122599999888888877766644444455655442111 11111 Q ss_pred CCCccccccCCCcchhheeeecCC--cCCCCCCCccceEec-ccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccch Q lcl|Aclame:pro 311 NKSTDKEEWSMNVDEDYFMQFKGT--LDAGAKLNDMIQFMQ-GDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVK 387 (518) Q Consensus 311 ~~~~~~~~~~~d~d~~~~~~~~~~--~~~~~~~~~~i~~~~-~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~T 387 (518) .-...........-.+.|...... .-.-..+...++.++ ....+.++.+..+...+.|....|++|..+|..+. T Consensus 215 ~l~~e~~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~--- 291 (406) T protein:vir:95 215 ATAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGEF--- 291 (406) T ss_pred CCCHHHHHHHHHHHHHHhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCc--- Confidence 000000000000000111111100 000001111222222 24567788888888989999999999988875322 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhC Q lcl|Aclame:pro 388 ATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSA 467 (518) Q Consensus 388 AtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~a 467 (518) +|- ++ ...++.+|..++..+-....... +. ..++.+.+++++.+..|..++++...+++.+ T Consensus 292 -~~~------~~------~~~~~~~l~P~~~~ie~~l~~~l---~~---~~~~~~~fd~~~l~~~d~~~~~~~~~~l~~~ 352 (406) T protein:vir:95 292 -NRD------EY------NNFINSTILPIAKGIEQELTRKL---LI---SPDLYFKFNPRSLYAYDLKELAEVGSNMYVR 352 (406) T ss_pred -hHH------HH------HHHHHHHHHHHHHHHHHHHHHhc---CC---CCCcEEEeechhhhcCCHHHHHHHHHHHHhC Confidence 221 11 12344555555555544332211 11 2235688888898899999999999999999 Q ss_pred CCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhc----cccCCCCchhccCcCCCCC Q lcl|Aclame:pro 468 LAMSVEEKVKLIHPKWED-EEIQAEVKRIYLEN----AIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 468 G~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~----~~~~~~dp~~~~~~~~~gG 518 (518) |+|+..++.+++. +.. +..++-+ +.... ..... +....|+-++.+| T Consensus 353 G~~t~NE~R~~~g--l~p~~~gd~~~--~~~n~~~~~~~~~~-~~~k~g~~~~~~~ 403 (406) T protein:vir:95 353 GIMEGNEVRDWLG--LSPKEGLSELV--ILENYIPLDKIGDQ-SKLKGGDNSGADG 403 (406) T ss_pred CCcCHHHHHHHhC--CCCCCCcceee--eccCccchhhcccc-cccCCCCCCCCCC Confidence 9999999887762 322 1111110 00000 00000 0111122233444 No 177 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=96.60 E-value=0.00048 Score=38.80 Aligned_cols=452 Identities=12% Similarity=-0.010 Sum_probs=165.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |=-|-..+...+.| +.+...+..+....++..+-.....|=.. ..+....++-=+.+...++.+|+-| T Consensus 6 ~~~~~~~~~l~~r~----------~~Lk~~R~~~e~~w~e~~~~tlP~~~~~~--~~~~~~~~~~dstg~~a~~~LAa~l 73 (515) T protein:vir:70 6 LEYGGQRSKIPKLW----------EKFSKKRSPYLDRAKHFAKLTLPYLMNNK--GDNETSQNGWQGVGAQATNHLANKL 73 (515) T ss_pred hhhcCCHHHHHHHH----------HHHHHhhhHHHHHHHHHHHHhcccccCCC--CCcccccccccchHHHHHHHHHHHH Confidence 33333333333333 11111122222222222222222111000 1111111121123555666666655 Q ss_pred cCCc-----ceEEecccccc-------chH--HHH-------HHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECC Q lcl|Aclame:pro 81 SGKP-----LSIDVTGVNGS-------KDE--NLT-------KQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG 139 (518) Q Consensus 81 ~~e~-----~~i~v~~~~~~-------~d~--~~~-------~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~ 139 (518) .+-. +=+.+...+.. ..+ .++ ..+...+..++|+..+.++.....+.|.+++- .+.. T Consensus 74 ~~~ltpp~~~WF~l~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~--~d~~ 151 (515) T protein:vir:70 74 AQVLFPAQRSFFRVDLTAKGEKVLDDRGLKKTQLATIFARVETTAMKALEQRQFRPAIVEVFKHLIVAGNCLLY--KPSK 151 (515) T ss_pred HHhhcCCCCcccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhHCeEEEE--EeCC Confidence 5432 22333322110 001 122 23455588899999999999999999998764 4432 Q ss_pred eEEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccc Q lcl|Aclame:pro 140 RPSISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISA 218 (518) Q Consensus 140 ~i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~ 218 (518) . .+..++-..|+-.-+ +|++..+++-.++....-..-|... .+..........+..-.|-+.+++...+... T Consensus 152 ~-~~~~~pl~~y~v~~d~~G~v~~i~rr~~~t~~~l~~~f~~~--~~~~~~~~~~~~~~~v~i~~~v~~~~~~~~~---- 224 (515) T protein:vir:70 152 G-AMSAVPMHHYVVNRDTNGDLMDVILLQEKALRTFDPATRMA--IEVGMKGKKCKEDDNVKLYTHAQYAGEGFWK---- 224 (515) T ss_pred C-CeEEEEcCeEEEeeCCCcCeeEEEeeeeccHHHHHHhhhhh--hhhhhhhhhcCCCCceEEEEEEEecCCCceE---- Confidence 1 244555555555432 4665555433222110000000000 0000000000000001111112221110000 Q ss_pred cccccccccccccccCcccce-eecCC---CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHH Q lcl|Aclame:pro 219 ERLPEQITSYLHTNDIQLNHS-VSIGL---KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR-EGE 293 (518) Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~-~~tg~---~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~-e~~ 293 (518) .+..+..... ...+. ..|+++.--+ ...++.||+|--..+.+-++.|+..--.... ... T Consensus 225 -----------~~~e~d~~~~~~es~y~~~e~P~~~~Rw~-----~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~ 288 (515) T protein:vir:70 225 -----------INQSADDIPVGKESRIKSEKLPFIPLTWK-----RSYGEDWGRPLAEDYSGDLFVIQFLSEAMARGAAL 288 (515) T ss_pred -----------EEEecCceeeccccccccccCCceeeeee-----ecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHH Confidence 0000000000 01111 1223222112 2346778999999999999999876555554 345 Q ss_pred hccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 294 KTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSG 373 (518) Q Consensus 294 ~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G 373 (518) ..++...||++.+-.... ..+.....+.. |..+...+-.+.+......-...|+.+-+.|.... T Consensus 289 a~~p~~lv~~~g~~~~~~--------l~~~~~g~iv~-------g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af- 352 (515) T protein:vir:70 289 MADIKYLIRPGSQTDVDH--------FVNSGTGEVIT-------GVAEDIHIVQLGKYADLTPISAVLEVYTRRIGVIF- 352 (515) T ss_pred hcCCCeeeCcccccchhh--------ccccCCceeec-------CCcccceeeecCcccchhHHHHHHHHHHHHHHHHH- Confidence 566776776544311100 00111111111 11111112122232233334444555544443332 Q ss_pred CCcccccc-CCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCC Q lcl|Aclame:pro 374 YNPATFNL-GNREVKATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMS 451 (518) Q Consensus 374 ~s~~tf~~-d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~ 451 (518) + ..++.. ++..+|||||..+.+...+...-.-..+.. .|..++..+ .... .+..++..+.++.-.++ T Consensus 353 ~-~~~l~~rd~~rvTAtEV~~r~~E~~~~LGpv~srL~~Ell~Pli~r~---~~~~------~p~~P~~~v~~~~vs~l- 421 (515) T protein:vir:70 353 M-METMTRRDAERVTAVEIQRDALEIEQNMGGVYSLFAMTMQTPIAMWG---LQEA------GDSFTSELVDPVIVTGI- 421 (515) T ss_pred h-hhhhhccCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHhh------CCCCChhhcccceehhH- Confidence 1 111222 444589999988877665554433333332 222333222 1111 12222222333332221 Q ss_pred CCHHHHH-------HHHHHHH-hCCC-------CCHHHHHHHH---c--C-C--CCHHHHHHHHHHHHHhccccCCCCc- Q lcl|Aclame:pro 452 VNLNELS-------STLNNMN-SALA-------MSVEEKVKLI---H--P-K--WEDEEIQAEVKRIYLENAIGEVPDP- 507 (518) Q Consensus 452 ~d~~~~~-------~~~~~~~-~aG~-------~S~~~~v~~~---~--~-~--~~eeea~eev~rI~~E~~~~~~~dp- 507 (518) ....++ +..+.+- .+++ +-...+++.+ . | . -++||++++.++.++.+.......+ T Consensus 422 -~~L~r~q~~~~i~~~~q~i~~~~~~~p~~~~~id~d~~~~~~a~~~g~p~~~~rs~eev~~~r~q~~~~~~~~~~~~~~ 500 (515) T protein:vir:70 422 -EALGRMAELDKLANFAQYMSLPQTWPEPAQRAIRWGDYMDWVRGQISAELPFLKSEEEMQQEMAQQAQAQQEAMLNEGV 500 (515) T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhccChhHHhhCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHhh Confidence 111111 1111110 0111 1122223222 1 0 1 1666666655543332222111111 Q ss_pred -----hhccCcCCCCC Q lcl|Aclame:pro 508 -----EAIGGMETKGG 518 (518) Q Consensus 508 -----~~~~~~~~~gG 518 (518) ... +-..+.| T Consensus 501 ~~a~~~~~-~~~~~~~ 515 (515) T protein:vir:70 501 AKAVPGVI-QQEMKEG 515 (515) T ss_pred hhhcccch-hhhhccC Confidence 111 1123333 No 178 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=96.54 E-value=0.00053 Score=38.56 Aligned_cols=380 Identities=10% Similarity=0.011 Sum_probs=151.2 Q ss_pred cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcC Q lcl|Aclame:pro 3 VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISG 82 (518) Q Consensus 3 ~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~ 82 (518) ++|.|-++++. ..++. +......+. ..+....+. .....-++....+ +.-+..+--..+++.+|+-+.+ T Consensus 1 m~m~~f~~~~~--~~~~~--~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~v~~---~~al~~~~v~~~i~~ia~~ia~ 69 (392) T protein:vir:39 1 MILPILNFINQ--TNDPP--EVGSVQSYF--PDGNDAQIM--ESLLGDNNEWVSA---RAALRNSDLFSIILQLSSDLAI 69 (392) T ss_pred Ccchhhhhhhc--ccccc--ccccccccc--ccCchhhhh--hhhcCCCCceech---HHhhccHHHHHHHHHHHHhhcc Confidence 44444444421 00110 000000000 000000000 0000001111111 1112222223455666666544 Q ss_pred CcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE-cCc Q lcl|Aclame:pro 83 KPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFK-NNE 159 (518) Q Consensus 83 e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~-~g~ 159 (518) =| |++...+ . ...+.+==..-....-++..+...+..|.+++.+..+ +|++ .+..++++.+-+.-. +|. T Consensus 70 lp--~~~~~~~---~---~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~ 141 (392) T protein:vir:39 70 VK--INAEKKK---N---QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN 141 (392) T ss_pred Cc--eeeccch---h---hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCc Confidence 33 3432111 1 1111110000011222334455667778887776554 3454 455556665544321 111 Q ss_pred EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce Q lcl|Aclame:pro 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) Q Consensus 160 ~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (518) .+++..... ++..... .. +..+ T Consensus 142 ----------------~~~y~~~~~-------------------------~~~~~~~------~~---------~~~~-- 163 (392) T protein:vir:39 142 ----------------GMYYNITFD-------------------------DPKIEPI------LQ---------APQS-- 163 (392) T ss_pred ----------------eEEEEEEec-------------------------Cccccee------EE---------Eccc-- Confidence 111111000 0000000 00 0000 Q ss_pred eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeee--chhhhccCCCCCccc Q lcl|Aclame:pro 240 VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAA--SERMFRKKVNKSTDK 316 (518) Q Consensus 240 ~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v--~~~~l~~~~~~~~~~ 316 (518) -+.|++....+ +..+|+|.+.-+...+.....+-.....-|+.|- +.-++ +......+. .. T Consensus 164 --------eiih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~----~~ 227 (392) T protein:vir:39 164 --------DLIHMKLLSID----GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK----DK 227 (392) T ss_pred --------cEEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHH----HH Confidence 02344433211 2346999999888888555444433444456643 33332 221111000 00 Q ss_pred cccCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHH Q lcl|Aclame:pro 317 EEWSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQ 395 (518) Q Consensus 317 ~~~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~ 395 (518) . .-.+.|....... -.-.+++..++.++.+..+.++.+..+...+.|....|++|..+|..+...+..| .. T Consensus 228 ~-----~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~---~~ 299 (392) T protein:vir:39 228 A-----SRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQ---QI 299 (392) T ss_pred H-----HHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHH---HH Confidence 0 0001111110000 0001123456667767778889999999999999999999999986433322211 11 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 396 DATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEK 475 (518) Q Consensus 396 ~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~ 475 (518) ...++.+|..++..+......... . .+.++....+-.|..+.++.+.+++.+|+++..++ T Consensus 300 ----------~~f~~~~l~P~~~~ie~~l~~~L~---~-------~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~ 359 (392) T protein:vir:39 300 ----------SGMYASALNRYLRPAISELEYKLS---D-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQA 359 (392) T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhcc---c-------cccccchhhhccCHHHHHHHHHHHHhCCCcCHHHH Confidence 112223333333333222221111 0 12233333445677888888999999999999988 Q ss_pred HHHH-cCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 476 VKLI-HPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 476 v~~~-~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+.+ ..++...++.+ .|+ .++.|. | +++ T Consensus 360 r~~l~~~g~~p~e~r~------~e~---l~~~~~--G----d~~ 388 (392) T protein:vir:39 360 TFVLQEAGYIPKDLPA------PEN---TNKKTT--G----QSN 388 (392) T ss_pred HHHHHhcCCCccccch------hcC---CCCCCC--C----CCC Confidence 7654 22343333221 111 111110 1 111 No 179 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=96.54 E-value=0.00053 Score=38.56 Aligned_cols=380 Identities=10% Similarity=0.011 Sum_probs=151.2 Q ss_pred cCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcC Q lcl|Aclame:pro 3 VWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISG 82 (518) Q Consensus 3 ~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~ 82 (518) ++|.|-++++. ..++. +......+. ..+....+. .....-++....+ +.-+..+--..+++.+|+-+.+ T Consensus 1 m~m~~f~~~~~--~~~~~--~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~v~~---~~al~~~~v~~~i~~ia~~ia~ 69 (392) T protein:vir:10 1 MILPILNFINQ--TNDPP--EVGSVQSYF--PDGNDAQIM--ESLLGDNNEWVSA---RAALRNSDLFSIILQLSSDLAI 69 (392) T ss_pred Ccchhhhhhhc--ccccc--ccccccccc--ccCchhhhh--hhhcCCCCceech---HHhhccHHHHHHHHHHHHhhcc Confidence 44444444421 00110 000000000 000000000 0000001111111 1112222223455666666544 Q ss_pred CcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE-cCc Q lcl|Aclame:pro 83 KPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFK-NNE 159 (518) Q Consensus 83 e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~-~g~ 159 (518) =| |++...+ . ...+.+==..-....-++..+...+..|.+++.+..+ +|++ .+..++++.+-+.-. +|. T Consensus 70 lp--~~~~~~~---~---~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~ 141 (392) T protein:vir:10 70 VK--INAEKKK---N---QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYEN 141 (392) T ss_pred Cc--eeeccch---h---hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCc Confidence 33 3432111 1 1111110000011222334455667778887776554 3454 455556665544321 111 Q ss_pred EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce Q lcl|Aclame:pro 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) Q Consensus 160 ~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (518) .+++..... ++..... .. +..+ T Consensus 142 ----------------~~~y~~~~~-------------------------~~~~~~~------~~---------~~~~-- 163 (392) T protein:vir:10 142 ----------------GMYYNITFD-------------------------DPKIEPI------LQ---------APQS-- 163 (392) T ss_pred ----------------eEEEEEEec-------------------------Cccccee------EE---------Eccc-- Confidence 111111000 0000000 00 0000 Q ss_pred eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeee--chhhhccCCCCCccc Q lcl|Aclame:pro 240 VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAA--SERMFRKKVNKSTDK 316 (518) Q Consensus 240 ~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v--~~~~l~~~~~~~~~~ 316 (518) -+.|++....+ +..+|+|.+.-+...+.....+-.....-|+.|- +.-++ +......+. .. T Consensus 164 --------eiih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~----~~ 227 (392) T protein:vir:10 164 --------DLIHMKLLSID----GGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDK----DK 227 (392) T ss_pred --------cEEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHH----HH Confidence 02344433211 2346999999888888555444433444456643 33332 221111000 00 Q ss_pred cccCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHHH Q lcl|Aclame:pro 317 EEWSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQ 395 (518) Q Consensus 317 ~~~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~ 395 (518) . .-.+.|....... -.-.+++..++.++.+..+.++.+..+...+.|....|++|..+|..+...+..| .. T Consensus 228 ~-----~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~---~~ 299 (392) T protein:vir:10 228 A-----SRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQ---QI 299 (392) T ss_pred H-----HHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHH---HH Confidence 0 0001111110000 0001123456667767778889999999999999999999999986433322211 11 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHH Q lcl|Aclame:pro 396 DATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEK 475 (518) Q Consensus 396 ~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~ 475 (518) ...++.+|..++..+......... . .+.++....+-.|..+.++.+.+++.+|+++..++ T Consensus 300 ----------~~f~~~~l~P~~~~ie~~l~~~L~---~-------~~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~ 359 (392) T protein:vir:10 300 ----------SGMYASALNRYLRPAISELEYKLS---D-------HISVNMRPAIDPLGDNYLSTISTATRWGALAENQA 359 (392) T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhcc---c-------cccccchhhhccCHHHHHHHHHHHHhCCCcCHHHH Confidence 112223333333333222221111 0 12233333445677888888999999999999988 Q ss_pred HHHH-cCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 476 VKLI-HPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 476 v~~~-~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+.+ ..++...++.+ .|+ .++.|. | +++ T Consensus 360 r~~l~~~g~~p~e~r~------~e~---l~~~~~--G----d~~ 388 (392) T protein:vir:10 360 TFVLQEAGYIPKDLPA------PEN---TNKKTT--G----QSN 388 (392) T ss_pred HHHHHhcCCCccccch------hcC---CCCCCC--C----CCC Confidence 7654 22343333221 111 111110 1 111 No 180 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=96.54 E-value=0.00053 Score=38.55 Aligned_cols=426 Identities=11% Similarity=0.044 Sum_probs=194.1 Q ss_pred CCcCchHHH-------------------------------------HHHHHhcCCCCh-hhHHhhHHHHhhccchhhhhh Q lcl|Aclame:pro 1 MGVWSVMTR-------------------------------------FIKGWLNGKPNG-SEPELIPKYLPLVPDNQKEWS 42 (518) Q Consensus 1 ~~~~~~~~~-------------------------------------~~~~w~~g~p~~-~e~~~~~~~~~~~~~~~~~~~ 42 (518) +|.|..-.. +.++.+-.+++. .+.++|.+|+.+.. .++.. T Consensus 7 f~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~--~pEvd 84 (516) T protein:vir:10 7 FKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLIN--NPEVE 84 (516) T ss_pred cccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhh--ccchh Confidence 222221111 112222222222 34556666655421 11110 Q ss_pred hhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCcceEEecccc--ccchHHHHHHHHHHHhhcChHHHHHHH Q lcl|Aclame:pro 43 KDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVN--GSKDENLTKQLKEALRIDNFDSKSVKI 120 (518) Q Consensus 43 ~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~--~~~d~~~~~~l~~vl~dn~f~~~~~~~ 120 (518) .+..... -..-.... ..+|.++.+...+ .+-.++..+.++.|+.--+|..+..+. T Consensus 85 -~Av~eIV-neaiv~d~---------------------~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~ 141 (516) T protein:vir:10 85 -RAVANIV-NEAIVYER---------------------GHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTL 141 (516) T ss_pred -hHHHHhh-cceeEecC---------------------CCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHH Confidence 0000000 00000001 1123344443332 122355677788888888899999999 Q ss_pred HHHHHhhCCEEEEEEEECCe---EEEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCc--eEEEE-EEEEeecccceeeee Q lcl|Aclame:pro 121 VELAGGSGVSAVKINILNGR---PSISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNK--ADIYY-LVESREIKQWDKEGK 194 (518) Q Consensus 121 ~e~~~a~G~~~~k~~~d~~~---i~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~--~~~y~-~lE~he~~~~~~~~~ 194 (518) +..+-+-|.++|.-..|+++ ..+.+++|-++-+... +++.+. ..++. ..|+- T Consensus 142 fR~WYVDgRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~------------i~~~~~~~~~v~~~~~e~~---------- 199 (516) T protein:vir:10 142 FRRWYVDSRIFFHKIMPNPKKGIAELRRLDPRFMEYYRE------------IVTSDIGGTTIVKGYREFF---------- 199 (516) T ss_pred HhhhhhcceEEEEEEecCccccceeeeeeCCcceeeEee------------ecccccccchhhhhhhhee---------- Confidence 99999999999998787532 4577777777666422 111111 00000 00110 Q ss_pred eccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhh Q lcl|Aclame:pro 195 KLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQC 274 (518) Q Consensus 195 ~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~ 274 (518) . |...+.-|.-++....+.+. + -++.. .++|..- + -.+.....=+|-+..| T Consensus 200 ~---Y~~~~~~~~~~g~~~~~~~~---------i----kI~~d----------AI~y~hS-G--L~d~~~~~i~syLhkA 250 (516) T protein:vir:10 200 I---YTTGNEGYSYNGRIFEPNTR---------I----KIPRS----------AVVYASS-G--LMDCSDRGIIGYLHNA 250 (516) T ss_pred e---eccCccccccccceeCCCcc---------e----eechh----------heeeecc-c--ceeCCCCceeeeehhh Confidence 0 11111111111100000000 0 00111 1112110 0 0111111124555666 Q ss_pred HHHHHHHHHHHHHH--HHHHHhccceeee-chhhhccC------------------CCCCccccccCCCcchhheeeecC Q lcl|Aclame:pro 275 TNYLFAVDYFFTVY--MREGEKTKTKIAA-SERMFRKK------------------VNKSTDKEEWSMNVDEDYFMQFKG 333 (518) Q Consensus 275 ~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~ 333 (518) +-.+..|=-.-+.+ .|-.|+-++|||- +-.=|++. -+..++. -.+++.++.+.. T Consensus 251 iKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGe-----v~ddrk~msMlE 325 (516) T protein:vir:10 251 VKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGT-----VKNQKRNLSMTE 325 (516) T ss_pred hHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhHh Confidence 65555553333332 2444556677763 11111110 0111111 123344444433 Q ss_pred CcC----CCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc-c---chHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 334 TLD----AGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR-E---VKATEIWSLQDATVRKIEKK 405 (518) Q Consensus 334 ~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~-~---~TAtEi~s~~~~t~~t~~~~ 405 (518) +.. .|+.+ ..|+.+ |...--.-.+.+..+.+.+....+.+.+-+..+++ . .-++||....-+-...+.+. T Consensus 326 DyWLpRReGgrg-TEItTL-pGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rL 403 (516) T protein:vir:10 326 DYWLMRRDGKSV-TEVSSL-PGAQTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQL 403 (516) T ss_pred hhcccccCCCCc-cceeec-cccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHH Confidence 332 12222 223322 33333334566777778888899998888865432 2 25677766665555566666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHH-------HHHHHHHHH--hCCCCCHHHHH Q lcl|Aclame:pro 406 KRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNE-------LSSTLNNMN--SALAMSVEEKV 476 (518) Q Consensus 406 ~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~-------~~~~~~~~~--~aG~~S~~~~v 476 (518) |..+..-+.++++.=|-|-.-. .. .....-...|.++|...-.-.+.. ++..++.+. -++..|.++.. T Consensus 404 R~rFs~lf~~~L~~qLilKgii-t~--eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~ 480 (516) T protein:vir:10 404 QHDFEEIFLDPLKTNLIYKRII-TE--DEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVM 480 (516) T ss_pred HHHHHHHHHHHHHHhhhhccCC-CH--HHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHH Confidence 6666666666665544331100 00 000001134667776433323222 233333332 34678988877 Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCc Q lcl|Aclame:pro 477 KLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM 513 (518) Q Consensus 477 ~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~ 513 (518) +.. -..+|++..+|-+.|++|....--++|+.-..| T Consensus 481 k~I-Lr~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 481 KNI-LQMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred HHH-hcCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 665 468999999999999999877644566655666 No 181 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=96.54 E-value=0.00053 Score=38.55 Aligned_cols=426 Identities=11% Similarity=0.044 Sum_probs=194.1 Q ss_pred CCcCchHHH-------------------------------------HHHHHhcCCCCh-hhHHhhHHHHhhccchhhhhh Q lcl|Aclame:pro 1 MGVWSVMTR-------------------------------------FIKGWLNGKPNG-SEPELIPKYLPLVPDNQKEWS 42 (518) Q Consensus 1 ~~~~~~~~~-------------------------------------~~~~w~~g~p~~-~e~~~~~~~~~~~~~~~~~~~ 42 (518) +|.|..-.. +.++.+-.+++. .+.++|.+|+.+.. .++.. T Consensus 7 f~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~--~pEvd 84 (516) T protein:vir:10 7 FKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLIN--NPEVE 84 (516) T ss_pred cccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhh--ccchh Confidence 222221111 112222222222 34556666655421 11110 Q ss_pred hhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCcceEEecccc--ccchHHHHHHHHHHHhhcChHHHHHHH Q lcl|Aclame:pro 43 KDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVN--GSKDENLTKQLKEALRIDNFDSKSVKI 120 (518) Q Consensus 43 ~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~--~~~d~~~~~~l~~vl~dn~f~~~~~~~ 120 (518) .+..... -..-.... ..+|.++.+...+ .+-.++..+.++.|+.--+|..+..+. T Consensus 85 -~Av~eIV-neaiv~d~---------------------~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~ 141 (516) T protein:vir:10 85 -RAVANIV-NEAIVYER---------------------GHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTL 141 (516) T ss_pred -hHHHHhh-cceeEecC---------------------CCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHH Confidence 0000000 00000001 1123344443332 122355677788888888899999999 Q ss_pred HHHHHhhCCEEEEEEEECCe---EEEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCc--eEEEE-EEEEeecccceeeee Q lcl|Aclame:pro 121 VELAGGSGVSAVKINILNGR---PSISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNK--ADIYY-LVESREIKQWDKEGK 194 (518) Q Consensus 121 ~e~~~a~G~~~~k~~~d~~~---i~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~--~~~y~-~lE~he~~~~~~~~~ 194 (518) +..+-+-|.++|.-..|+++ ..+.+++|-++-+... +++.+. ..++. ..|+- T Consensus 142 fR~WYVDgRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~------------i~~~~~~~~~v~~~~~e~~---------- 199 (516) T protein:vir:10 142 FRRWYVDSRIFFHKIMPNPKKGIAELRRLDPRFMEYYRE------------IVTSDIGGTTIVKGYREFF---------- 199 (516) T ss_pred HhhhhhcceEEEEEEecCccccceeeeeeCCcceeeEee------------ecccccccchhhhhhhhee---------- Confidence 99999999999998787532 4577777777666422 111111 00000 00110 Q ss_pred eccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhh Q lcl|Aclame:pro 195 KLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQC 274 (518) Q Consensus 195 ~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~ 274 (518) . |...+.-|.-++....+.+. + -++.. .++|..- + -.+.....=+|-+..| T Consensus 200 ~---Y~~~~~~~~~~g~~~~~~~~---------i----kI~~d----------AI~y~hS-G--L~d~~~~~i~syLhkA 250 (516) T protein:vir:10 200 I---YTTGNEGYSYNGRIFEPNTR---------I----KIPRS----------AVVYASS-G--LMDCSDRGIIGYLHNA 250 (516) T ss_pred e---eccCccccccccceeCCCcc---------e----eechh----------heeeecc-c--ceeCCCCceeeeehhh Confidence 0 11111111111100000000 0 00111 1112110 0 0111111124555666 Q ss_pred HHHHHHHHHHHHHH--HHHHHhccceeee-chhhhccC------------------CCCCccccccCCCcchhheeeecC Q lcl|Aclame:pro 275 TNYLFAVDYFFTVY--MREGEKTKTKIAA-SERMFRKK------------------VNKSTDKEEWSMNVDEDYFMQFKG 333 (518) Q Consensus 275 ~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~ 333 (518) +-.+..|=-.-+.+ .|-.|+-++|||- +-.=|++. -+..++. -.+++.++.+.. T Consensus 251 iKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGe-----v~ddrk~msMlE 325 (516) T protein:vir:10 251 VKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGT-----VKNQKRNLSMTE 325 (516) T ss_pred hHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhHh Confidence 65555553333332 2444556677763 11111110 0111111 123344444433 Q ss_pred CcC----CCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc-c---chHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 334 TLD----AGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR-E---VKATEIWSLQDATVRKIEKK 405 (518) Q Consensus 334 ~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~-~---~TAtEi~s~~~~t~~t~~~~ 405 (518) +.. .|+.+ ..|+.+ |...--.-.+.+..+.+.+....+.+.+-+..+++ . .-++||....-+-...+.+. T Consensus 326 DyWLpRReGgrg-TEItTL-pGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rL 403 (516) T protein:vir:10 326 DYWLMRRDGKSV-TEVSSL-PGAQTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQL 403 (516) T ss_pred hhcccccCCCCc-cceeec-cccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHH Confidence 332 12222 223322 33333334566777778888899998888865432 2 25677766665555566666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHH-------HHHHHHHHH--hCCCCCHHHHH Q lcl|Aclame:pro 406 KRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNE-------LSSTLNNMN--SALAMSVEEKV 476 (518) Q Consensus 406 ~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~-------~~~~~~~~~--~aG~~S~~~~v 476 (518) |..+..-+.++++.=|-|-.-. .. .....-...|.++|...-.-.+.. ++..++.+. -++..|.++.. T Consensus 404 R~rFs~lf~~~L~~qLilKgii-t~--eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~ 480 (516) T protein:vir:10 404 QHDFEEIFLDPLKTNLIYKRII-TE--DEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVM 480 (516) T ss_pred HHHHHHHHHHHHHHhhhhccCC-CH--HHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHH Confidence 6666666666665544331100 00 000001134667776433323222 233333332 34678988877 Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCc Q lcl|Aclame:pro 477 KLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM 513 (518) Q Consensus 477 ~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~ 513 (518) +.. -..+|++..+|-+.|++|....--++|+.-..| T Consensus 481 k~I-Lr~tDeei~~e~k~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 481 KNI-LQMTEEQIAQEEKQIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred HHH-hcCCHhhHHHHHHHHHHhhhCCCCCCCCccccC Confidence 665 468999999999999999877644566655666 No 182 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=96.48 E-value=0.00059 Score=38.29 Aligned_cols=393 Identities=10% Similarity=0.060 Sum_probs=152.0 Q ss_pred CCcC--chHHHHHHHHhcCCCChhhHHhhHHHHhhccc---hhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHH Q lcl|Aclame:pro 1 MGVW--SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPD---NQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~~~--~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~ 75 (518) |-+- +.+...+|....+ ++...... .+-.|... .+|+- .....+..+--...++. T Consensus 1 m~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~----~~~~v-----~~~~a~~~~~v~~~i~~ 60 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLID-----------NWIDQSTSKLYDFSPWKNR----SFWGV-----INNTLETNETIFSAITK 60 (412) T ss_pred CccchhhhhhhhhhhhHhh-----------hhhcccccccccccccCCc----ccccc-----chhhhhccHHHHHHHHH Confidence 5444 3444444322111 11000000 01111110 11110 01111222222233344 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcCh--HHHH-HHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCe Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNF--DSKS-VKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQ 150 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f--~~~~-~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~ 150 (518) +|+-+..=| |.+-......+..+...|.. +-|.. ...+ +..+...+..|.+++.+.-+ .|++ .+..++|+. T Consensus 61 ia~~iA~lp--~~~~~~~~~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~ 136 (412) T protein:vir:26 61 LSNSMASLP--LKMYEDYKVVNTEVSDLLTV--SPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDV 136 (412) T ss_pred HHHhHhhCc--eeEeeccccccchHHHHHHh--hcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCce Confidence 444443333 33322222222222222221 11211 2223 34455666677777665443 3443 455556666 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +-+...+. ...++ |.++.. .+.... + T Consensus 137 v~v~~~~~---------------~~~~~------------------------y~~~~~-~g~~~~---------~----- 162 (412) T protein:vir:26 137 VEMLIENQ---------------SRELY------------------------YSIHAA-TGNKLI---------V----- 162 (412) T ss_pred eEEEEeCC---------------CcEEE------------------------EEEEcC-CceEEE---------E----- Confidence 55543211 00111 111100 000000 0 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCC Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKV 310 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~ 310 (518) ... -+.|+++... .+..+|+|.+.-+...++-...+ ..+. +..++.. +.-++.... T Consensus 163 ----~~~----------evih~~~~~~----~~~~~G~s~i~~~~~~i~~~~a~-~~~~--~~~~~~~---~~~i~~~~~ 218 (412) T protein:vir:26 163 ----HNM----------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAV-RTFN--LTEMQKP---DSFMLKYGS 218 (412) T ss_pred ----ccc----------cEEEeCCCCC----CCCcccccHHHHHHHHHHHHHHH-HHHH--HHhcCCC---CceEEecCC Confidence 000 1234443211 12335888887776666544333 2221 3222221 101111111 Q ss_pred CCCccccccCCCcchhheeeecCCc--CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c- Q lcl|Aclame:pro 311 NKSTDKEEWSMNVDEDYFMQFKGTL--DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V- 386 (518) Q Consensus 311 ~~~~~~~~~~~d~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~- 386 (518) .-.... .+.-.+.|....... -.--+++..++.++......++++..+...+.|....|++|..++..++. . T Consensus 219 ~l~~e~----~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~s 294 (412) T protein:vir:26 219 NVGKEK----RQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFA 294 (412) T ss_pred CCCHHH----HHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcc Confidence 100000 000001111100000 00011233466677677788999988888899999999999999864432 1 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) ++.+. .. ..++.+|..++..+.......... .......+.+.+++++-+..|.+++++.+.+++. T Consensus 295 n~e~~---~~----------~f~~~~l~P~~~~ie~~ln~kLl~--~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~ 359 (412) T protein:vir:26 295 KNEEL---NR----------FYLQHTLLPIVKQYEEEFNRKLLT--KTDREKNRYFKFNVKSYLRADSATQAEVYFKAVR 359 (412) T ss_pred cHHHH---HH----------HHHHHHHHHHHHHHHHHHHhhcCC--cccccCcceEEeechhhhccCHHHHHHHHHHHHh Confidence 22221 11 112223333333332222111100 0001112346666677778899999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhc-cccCC---CCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLEN-AIGEV---PDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~-~~~~~---~dp~~~~~~~~~gG 518 (518) +|+|+.-++.+++. +.. +..++-+ +.... ....+ +.....|+-|.+-| T Consensus 360 ~G~~t~NE~R~~~g--l~p~~ggD~~~--~~~n~~~~~~~~~~~~~~~gG~~n~~e~ 412 (412) T protein:vir:26 360 SGYYTINDIREWED--LPPVEGGDKPL--ISGDLYPIDTPLELRKSLKGGDKNVNES 412 (412) T ss_pred CCCcCHHHHHHHhC--CCCCCCcCeee--ecccccccccchhhcccccCCCCCcCCC Confidence 99999999887763 222 1111100 00000 00000 00111222233333 No 183 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=96.45 E-value=0.00062 Score=38.18 Aligned_cols=373 Identities=9% Similarity=-0.014 Sum_probs=155.1 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+++-++...+..- . . .+.+....... ....|.....- .....++.+---.+++.+|+-+ T Consensus 1 M~~f~~~~~~~~~~~----~----~-~~~~~~~~~~~---------~~~~~~~~~~v-~~~~al~~~~v~~~i~~ia~~i 61 (386) T protein:vir:49 1 MPIFNITNLATESPP----I----N-QESFFDIADSD---------FLASLNSSEWV-SAENALKNSDLFSIISQLSNDL 61 (386) T ss_pred CchhhhhccCCCCcc----c----c-hhhhhhhhhcc---------ccccccCCcee-chhhhhccHHHHHHHHHHHHHh Confidence 888755543321100 0 0 00000000000 00001000000 0011111111123456666666 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEEc- Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFKN- 157 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~~- 157 (518) .+=|+ .+-.. ..+..+.+-=..-....-.+..+...+..|.+++.+..+ +|++ .+..++|+.+-+.-.+ T Consensus 62 a~~p~--~~~~~------~~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~ 133 (386) T protein:vir:49 62 ATAKI--TTSRK------QLQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDN 133 (386) T ss_pred hhCce--eeccc------hhhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCC Confidence 55443 33211 111111110001112223334445566678888776654 3443 5666777766554221 Q ss_pred CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccc Q lcl|Aclame:pro 158 NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLN 237 (518) Q Consensus 158 g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 237 (518) +.. .+|+. + . .+...... ..+ ... T Consensus 134 ~~~---------------~~y~~---------------------~----~-~~~~~~~~------~~~---------~~~ 157 (386) T protein:vir:49 134 QNG---------------LYYNI---------------------T----F-DDPHIAPK------QHV---------PQN 157 (386) T ss_pred Cce---------------EEEEE---------------------E----E-cCccccce------eEE---------ccc Confidence 110 01110 0 0 00000000 000 000 Q ss_pred ceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCCCccc Q lcl|Aclame:pro 238 HSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNKSTDK 316 (518) Q Consensus 238 ~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~~~~~ 316 (518) -+.|++...++ +..+|+|.+..+.+.+.....+......-|+.|. ++.++ .......... T Consensus 158 ----------evih~~~~~~~----~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il-----~~~~~~~~~~ 218 (386) T protein:vir:49 158 ----------DILHFRLLSVD----GGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGIL-----KIKGGGLLDF 218 (386) T ss_pred ----------cEEEecCCCCC----CccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEE-----EeCCCCChHH Confidence 03445443221 2346999999888888765544444444456544 44332 1111100000 Q ss_pred cccCCCcchhheeeecCC--cCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHHH Q lcl|Aclame:pro 317 EEWSMNVDEDYFMQFKGT--LDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSL 394 (518) Q Consensus 317 ~~~~~d~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~ 394 (518) .... .+.+...... -..-.+++..++.++.+..+.++++..+...+.|....|++|..++.++...++.+-. T Consensus 219 ~~~~----~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~-- 292 (386) T protein:vir:49 219 KTKV----SRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGDQQSSLEMI-- 292 (386) T ss_pred HHHH----HHHHHHhccCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccchHHHH-- Confidence 0000 0000000000 0000122335777777788889999999999999999999999998754443222211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 395 QDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEE 474 (518) Q Consensus 395 ~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~ 474 (518) .+....++.-....|+..|... + . ..+.++....+-.|..+.+....+++.+|++++-+ T Consensus 293 ~~~~~~~i~~~l~~i~~~~~~~----------l-----~------~~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE 351 (386) T protein:vir:49 293 YNIYFKSVSRYLRPFVSEMSKK----------L-----S------CEVDVDISPAVDPTGSNYISLINSMVKSGTLAQNQ 351 (386) T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------h-----c------chhcccchhhhccCHHHHHHHHHHHHhCCCcCHHH Confidence 1111112222222222211111 1 0 12344555666678888889999999999999988 Q ss_pred HHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 475 KVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 475 ~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +.+.+. .++...+. .+. +. ...-..+|| T Consensus 352 ~r~~l~~~~~~~~~~----~~~--~~----------~~~~~~~gG 380 (386) T protein:vir:49 352 GLYILQQAEILPKEL----PDG--KN----------PNRTSLKGG 380 (386) T ss_pred HHHHHhhCCCCCCcC----cch--hc----------cCCCCCCCC Confidence 876542 11221111 110 00 001123444 No 184 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=96.38 E-value=0.00069 Score=37.93 Aligned_cols=463 Identities=8% Similarity=-0.030 Sum_probs=171.6 Q ss_pred chHHH------HHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHH Q lcl|Aclame:pro 5 SVMTR------FIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 5 ~~~~~------~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ 78 (518) |-=++ .+|.=|. .+...+..+....++..+-...+.+-...........++-=+.+...++.+|+ T Consensus 1 m~~~~~~~~~~~~~~r~~---------~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa 71 (536) T protein:vir:10 1 MAEKRTGLAEDGAKSVYE---------RLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARGLNNLAS 71 (536) T ss_pred CcchhhchhHHHHHHHHH---------HHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHH Confidence 11111 1111111 11111111222222222222221111111111122223434457777777777 Q ss_pred HHcCCc----ceEEeccccccc------h----------HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC Q lcl|Aclame:pro 79 YISGKP----LSIDVTGVNGSK------D----------ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN 138 (518) Q Consensus 79 ll~~e~----~~i~v~~~~~~~------d----------~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~ 138 (518) -|++-. +=+.+...+..- + +...+.+...+..++|+..+.+++....+.|.+++-.--+. T Consensus 72 ~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~e~~ 151 (536) T protein:vir:10 72 KLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLPEPE 151 (536) T ss_pred HHHhhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEeeCC Confidence 665542 222322221110 0 11234566778889999999999999999999886432222 Q ss_pred C--eEEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccc Q lcl|Aclame:pro 139 G--RPSISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTP 215 (518) Q Consensus 139 ~--~i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~ 215 (518) + ...+..++-..|+-.-+ +|++..++.-..+....-..-|-. +. ...... ..-+..-.|.+.+|.-...... T Consensus 152 ~~~~~~~~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~fg~-~~-~~~~~~--~~~~~~v~v~~~V~~~~~~~~~- 226 (536) T protein:vir:10 152 GSNYNPMKLYRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIRK-AV-EGQGGE--KKADETIDVYTHIYLDEASGEY- 226 (536) T ss_pred CCceeeEEEEEcCeEEEeeCCCCCeeEEeeeeeccHHHHHHhhhh-hh-cccccc--cCcccceEEEEEEEEecCCCcE- Confidence 2 22356677677766533 465554432222110000000000 00 000000 0000111233333322111000 Q ss_pred ccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHh Q lcl|Aclame:pro 216 ISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR-EGEK 294 (518) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~-e~~~ 294 (518) .....+. ...+..+.....-...|+++.-.+ ...++.||+|--..+.+-++.|+..--.... .... T Consensus 227 -------~~~~e~~-g~~v~~~~g~~~f~~~P~i~~Rw~-----~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a 293 (536) T protein:vir:10 227 -------LRYEEVE-GMEVQGSDGTYPKEACPYIPIRMV-----RLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMIS 293 (536) T ss_pred -------EEEEeec-CccccccccccccccCCceeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 0000000 000000000000011233322222 2346778999999999999999876554444 3344 Q ss_pred ccceeee-chhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 295 TKTKIAA-SERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSG 373 (518) Q Consensus 295 g~~ri~v-~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G 373 (518) .+....| |..+.....- -+.....+.. +..+...+..+...-+...-.+.|+.+-+.|....= T Consensus 294 ~~~~~lv~p~g~~~~~~~---------~~~~~g~~v~-------g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~ 357 (536) T protein:vir:10 294 SKVIGLVNPAGITQPRRL---------TKAQTGDFVT-------GRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFM 357 (536) T ss_pred hcCCcccCcccccchhhh---------ccCCCcceec-------CCcccceeeeccccccchHHHHHHHHHHHHHHHHHh Confidence 4444344 3333222110 0001111111 111111122222222222233444444444433331 Q ss_pred CCccccc-cCCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCC Q lcl|Aclame:pro 374 YNPATFN-LGNREVKATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMS 451 (518) Q Consensus 374 ~s~~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~ 451 (518) +. .+. .++..+|||||..+.+...+...-.-..+.. .|..++.-++.+.... ......+. .-+.+++--++. T Consensus 358 ~~--~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~--g~lP~~p~--~~v~~~~vs~l~ 431 (536) T protein:vir:10 358 LN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQAT--QQIPELPK--EAVEPTISTGLE 431 (536) T ss_pred hh--hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCh--hhccceEEecHH Confidence 11 122 2455689999988887776655544333333 3444555555554221 11122222 223444432222 Q ss_pred CCHHHHHHHHHH-------HHhCC------CCCHHHHHHHH---cC---C---CCHHHHHHHHHHHHHhccccCCC---- Q lcl|Aclame:pro 452 VNLNELSSTLNN-------MNSAL------AMSVEEKVKLI---HP---K---WEDEEIQAEVKRIYLENAIGEVP---- 505 (518) Q Consensus 452 ~d~~~~~~~~~~-------~~~aG------~~S~~~~v~~~---~~---~---~~eeea~eev~rI~~E~~~~~~~---- 505 (518) ...+.+.++. +.+.+ .+....+++.+ ++ . -+++|++++.++-.++++..+.. T Consensus 432 --~l~r~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~ 509 (536) T protein:vir:10 432 --AIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALA 509 (536) T ss_pred --HHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2222222111 11111 13344444443 21 0 14455544443221111110000 Q ss_pred ---------CchhccCcCCCCC Q lcl|Aclame:pro 506 ---------DPEAIGGMETKGG 518 (518) Q Consensus 506 ---------dp~~~~~~~~~gG 518 (518) -|....+.-..+| T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~g 531 (536) T protein:vir:10 510 QGMAAQATASPEAMAAAADSVG 531 (536) T ss_pred HHHHHHHhcCchhHHhhhhccc Confidence 0111111111222 No 185 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=96.33 E-value=0.00074 Score=37.76 Aligned_cols=339 Identities=8% Similarity=0.011 Sum_probs=135.7 Q ss_pred hccCCCCccccceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCE Q lcl|Aclame:pro 51 WAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVS 130 (518) Q Consensus 51 w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~ 130 (518) =++.+.. ..++. +.+-+.+++||--.|... ....++ .+..+...+..|.+ T Consensus 1 ia~lp~~-~~~~~------~~~~~~l~~lL~~~PN~~----------~t~~~f-------------~~~~~~~l~l~Gna 50 (348) T protein:vir:93 1 MASLPLK-MYEDY------KVVNTEVSDLLTVSPNNS----------LSSFDF-------------INQIETIRNEKGNA 50 (348) T ss_pred CcccceE-eEecC------cCcccHHHHHHHhCCCCC----------CCHHHH-------------HHHHHHHHhhcCCe Confidence 0000000 00000 011112222221112110 001111 22334456667887 Q ss_pred EEEEEEE-CCeE-EEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEec Q lcl|Aclame:pro 131 AVKINIL-NGRP-SISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKI 208 (518) Q Consensus 131 ~~k~~~d-~~~i-~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~ 208 (518) ++.+..+ .|++ .+-.++++.+-+...+ +. +.+.|.++.. T Consensus 51 ~~~i~r~~~G~~~~L~~l~~~~v~~~~~~---------------~~------------------------~~~~y~~~~~ 91 (348) T protein:vir:93 51 YVLIERDIYHQPSKLFLLNPDVVEMLIEN---------------QS------------------------RELYYSIHAA 91 (348) T ss_pred EEEEEECCCCcEEEEEEEcCCceEEEEeC---------------CC------------------------cEEEEEEEcC Confidence 7766543 3443 3444444444332111 00 1111111111 Q ss_pred cCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 209 DGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY 288 (518) Q Consensus 209 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~ 288 (518) + +..+. + ... -+.|+++.... +...|+|.+.-+...++..+.+-..- T Consensus 92 ~-g~~~~---------~---------~~~----------eiih~r~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~ 138 (348) T protein:vir:93 92 T-GNKLI---------V---------HNM----------DMLHFKHIVAS----NMVQGISPIDVLKNTTDFDNAVRTFN 138 (348) T ss_pred C-CeEEE---------E---------ccc----------cEEEecCCCCC----CceeeccHHHHHHHHHHHHHHHHHHH Confidence 1 10000 0 000 12344433211 22358888877777766544332222 Q ss_pred HHHHHhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 289 MREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKA 368 (518) Q Consensus 289 ~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i 368 (518) ...+..+..-++.+...+.... ... ....-.+.+.. .+.. .--+++..++.++......++.+..+...+.| T Consensus 139 ~~~~~~~~~~i~~~~~~l~~e~-----~~~-~~~~~~~~~~n-~~~~-~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~I 210 (348) T protein:vir:93 139 LTEMQKPDSFMLKYGSNVSTEK-----RQQ-VLEDFKQYYEE-NGGI-LFQEPGVEIEPLPKKYVSEDIVASENLTRERV 210 (348) T ss_pred HHhcCCCceeEEecCCCCCHHH-----HHH-HHHHHHHHhhc-CCCe-eecCCCceEEEcCCChhHHHHHHHHHHHHHHH Confidence 1222221111222211111100 000 00000011110 0000 00122334666777777889999999899999 Q ss_pred HHHhCCCccccccCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeC Q lcl|Aclame:pro 369 VSKSGYNPATFNLGNRE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFP 447 (518) Q Consensus 369 ~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~ 447 (518) ....|++|..++..+.. .+..| .... ..++.+|.-++..+-......... .........+.++++ T Consensus 211 a~~fgVP~~~lg~~~~~~~~~~e--~~~~----------~~~~~~l~P~~~~ie~~l~~~l~~--~~~~~~g~~i~fd~~ 276 (348) T protein:vir:93 211 ANVFQLPSIFLNARSNTNFAKNE--ELNR----------FYLQHTLLPIVKQYEEEFNRKLLT--KTDREKNRYFKFNVK 276 (348) T ss_pred HHHhCCCHHHhCCCCCCCcccHH--HHHH----------HHHHHHHHHHHHHHHHHHHHhhCC--cccccCcceEEeech Confidence 99999999988764332 11111 1111 112233333333332222211110 000111234667777 Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCH-HHHHH-----HHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 448 DPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWED-EEIQA-----EVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 448 D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~e-eea~e-----ev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .-+..|.+++++...+++.+|+|+.-++.+++. +.. +..++ -+..|. +..+.+.+...|+-|.+.| T Consensus 277 ~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~g--~~p~~ggD~~~~~~n~~~~~---~~~~~~~~~~gg~~n~~~~ 348 (348) T protein:vir:93 277 SYLRADSATQAEVYFKAVRSGYYTINDIREWED--LPPVEGGDKPLISGDLYPID---TPLELRKSLKGGDKNVNES 348 (348) T ss_pred hhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCCCCCcCeEeecccccccc---cchhhcccccCCCCCcCCC Confidence 777889999999999999999999999887763 221 11111 001110 0001111222333344444 No 186 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=96.26 E-value=0.00081 Score=37.54 Aligned_cols=426 Identities=8% Similarity=-0.030 Sum_probs=162.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |+...+--+.+ .||.|.- ---+.++..+. ..+ .-|++|-=+++..+++|-..+ T Consensus 91 ~~~~~~~~~~l-~~~~~~~-----F~Gy~~la~la-Q~~--------------------eyr~~~~~ia~e~~R~w~~~~ 143 (694) T protein:vir:10 91 LDFNGTSMDAL-SFVTSSG-----FPGFPTLVLLA-QLP--------------------EYRAMHEVLADECIRTWGEAI 143 (694) T ss_pred hccCcccccch-hhhhccC-----cchHHHHHHHh-hcc--------------------chhhHHHHHHHHhhcccceec Confidence 33221111122 3554421 00011111110 001 112222224555555553333 Q ss_pred cCCcce-----EEeccccccc-hHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeE-E Q lcl|Aclame:pro 81 SGKPLS-----IDVTGVNGSK-DENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFW-I 153 (518) Q Consensus 81 ~~e~~~-----i~v~~~~~~~-d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~-P 153 (518) -++.-. +++.+..... +...-+.|+.-++.-++..+++++++.+-..||.++-..++++.-. .+..+ | T Consensus 144 ~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~-----l~~PL~~ 218 (694) T protein:vir:10 144 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQI-----MDTPLVP 218 (694) T ss_pred cccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeecCccc-----ccccccc Confidence 222211 2232222222 1122345666666667899999999999999999855444321100 00111 1 Q ss_pred --EE-EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 154 --DF-KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 154 --~~-~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) .. .-|...++..+ +.+. ++-..|...+ +... ..+.+...... T Consensus 219 ~~~~I~kGslKGl~Vi---------------Dp~~---------------vtP~~~n~~d----P~sp-dfgkP~~y~V~ 263 (694) T protein:vir:10 219 RPYTVPKGSFQGLRVV---------------EPYW---------------VTPNNYNSIN----PVAD-DFYKPSTWWMI 263 (694) T ss_pred ccccccCcceeeeEee---------------cccc---------------cccchhhhcc----chhh-ccCCCceEEEe Confidence 00 01112222111 1110 0000010000 0000 00000000000 Q ss_pred cccCcccce-eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHS-VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~-~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~ 309 (518) ...+..... ...+.+.|. .+++ ..+. .|+|....+.+-+++.+.+-....+=+..-...++ -.++.... T Consensus 264 G~~IH~SRL~~f~g~plPd--~LKp--~y~~-----~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~l-k~dla~~L 333 (694) T protein:vir:10 264 GTEVHATRLHTIVSRPVGD--MLKP--TYSF-----AGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGI-LMDLAQAL 333 (694) T ss_pred ceEEeeeeEEEecCCCchh--hhhc--cccc-----CcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHH-HHHHHHhh Confidence 000111111 111221111 1222 1122 49999999999999988876655543332222221 12222222 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccchH Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREVKA 388 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~TA 388 (518) .++....... .-.--+.|+...+..-. +++.+.++.++ +...-.-.-+..++..+.-.+|++.--| |.+..+..| T Consensus 334 ~~g~~~~l~~-R~eli~~~Rsn~G~~ll-Dk~~Eefeq~s--tslSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNA 409 (694) T protein:vir:10 334 MPGANVDLSM-RAELINRYRDNRNILFL-DKATEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNA 409 (694) T ss_pred cChhHHHHHH-HHHHHHHhcCccceEEE-ecCCcceEEEe--cccCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccc Confidence 2221110000 00001223333332211 12234444444 4444455566666777777777875544 655555434 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH------- Q lcl|Aclame:pro 389 TEIWSLQDATVRKIEKKK-RLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST------- 460 (518) Q Consensus 389 tEi~s~~~~t~~t~~~~~-~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~------- 460 (518) |- .++..-.|-.+..+| ..++..|+.++..+..- .++.. + .++++.|+.--..++.++|+. T Consensus 410 TG-E~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS-------~~G~i--d-p~i~~~fnPL~qmtd~EkAeI~~k~A~~ 478 (694) T protein:vir:10 410 SS-EGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLS-------LFGAV--D-PSIKWQWNALRELDDLEVAESRYKQAQS 478 (694) T ss_pred cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCC--C-CcceEEeCCCCCcCHHHHHHHHhhhhHH Confidence 31 112222444555444 34555565554443221 12222 2 268899998777777666655 Q ss_pred HHHHHhCCCCCHHHHHHHHcCC----CCH-HHHHHHHHHHH--HhccccCCCCc-hhccCcCCCCC Q lcl|Aclame:pro 461 LNNMNSALAMSVEEKVKLIHPK----WED-EEIQAEVKRIY--LENAIGEVPDP-EAIGGMETKGG 518 (518) Q Consensus 461 ~~~~~~aG~~S~~~~v~~~~~~----~~e-eea~eev~rI~--~E~~~~~~~dp-~~~~~~~~~gG 518 (518) .+..+.+|+++..+.-.++.-+ +.. .++..+--... +.++.+...++ ...+.++..|| T Consensus 479 d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (694) T protein:vir:10 479 DVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGG 544 (694) T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCc Confidence 4455577888887766665211 110 01100000000 00000000001 01122333343 No 187 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=96.25 E-value=0.00083 Score=37.48 Aligned_cols=374 Identities=12% Similarity=0.049 Sum_probs=154.9 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+.+-+++++ ...++.. .++... -.+ ..|..+ .+-....-+...--..+++.+|+-+ T Consensus 1 MGl~~~~~~~~----~~~~~~~--~~~~~~--------~~~-------~~~~~~-~~vt~~~al~~~~v~~~i~~Ia~~i 58 (394) T protein:vir:62 1 MGLRDRFSNYL----FKKAEKR--GYLDNV--------LGK-------SIRYSG-VYVTDSNILQSSDVYELLQDISNQM 58 (394) T ss_pred Cchhhhhhhhc----cCCCCch--hhhhhh--------hhc-------ccccCc-cccChhhhhccHHHHHHHHHHHHhh Confidence 98887665543 1221100 001000 000 000000 0001112223333445666666666 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcCh---HHHHHHH-HHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNF---DSKSVKI-VELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFK 156 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f---~~~~~~~-~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~ 156 (518) .+=|..+ -..++. +.....+..++..-+- ...+.+. +...+-.|.+++.+ ++..+. .++.+.|+. T Consensus 59 A~lp~~v--~~~~g~--~~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i--~~~~~~----~~~~~~~~~- 127 (394) T protein:vir:62 59 VLADIVV--EDEFGN--EIKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPIL--NGAQIH----LASNVFTEL- 127 (394) T ss_pred cccceEE--EcCCCc--ccchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEE--ecceee----ccccceEEE- Confidence 5544433 222221 1111122233322111 1123333 34444456655532 221111 112222211 Q ss_pred cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcc Q lcl|Aclame:pro 157 NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQL 236 (518) Q Consensus 157 ~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 236 (518) .+. .+|+ |... + . . + .. T Consensus 128 ---------------~~~-~~~~--------------------------~~~~-~--~---~------~---------~~ 144 (394) T protein:vir:62 128 ---------------DDN-LVEH--------------------------FNIG-G--H---E------I---------PP 144 (394) T ss_pred ---------------CCc-eEEE--------------------------EeeC-C--E---E------e---------ch Confidence 111 0110 0000 0 0 0 0 00 Q ss_pred cceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeec-hhhhccCCCCCc Q lcl|Aclame:pro 237 NHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAAS-ERMFRKKVNKST 314 (518) Q Consensus 237 ~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~-~~~l~~~~~~~~ 314 (518) .. +.|++....+. -+|+|.+.-+..+|.....+-.....-|+.|. ++-++- +..+.... . T Consensus 145 ~e----------iih~r~~~~d~-----~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~---~ 206 (394) T protein:vir:62 145 CM----------IRHVKNIGADH-----LRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQN---G 206 (394) T ss_pred hh----------eEEecCcCCCC-----ccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCH---H Confidence 00 23444322221 35999998888887766665555555567654 332221 11111000 0 Q ss_pred cccccCCCcchhheeeecCC---cCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGT---LDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEI 391 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~---~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi 391 (518) ..... ...-.+.|...... +--..+.+-.++.+++.....++++..+...+.|....|++|..++..... .+.+. T Consensus 207 ~~~~~-~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~s-n~e~~ 284 (394) T protein:vir:62 207 AQSKL-INAILDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTELIKE-DIEKA 284 (394) T ss_pred HHHHH-HHHHHHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCc-CHHHH Confidence 00000 00001111111000 000011122344566677888999999999999999999999999742221 11111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMS 471 (518) Q Consensus 392 ~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S 471 (518) .+..++.+|..++..+......... .. .....+.|+|+.....+.+++++.+.+++++|+|+ T Consensus 285 -------------~~~~~~~~l~P~~~~ie~~l~~kll---~~--~~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~g~~T 346 (394) T protein:vir:62 285 -------------MMYIHNKAVRPIMKNFEDHLSLLFY---AQ--NSGKRIKFKINILDFVTYSNKTNIGYNLVRTAITS 346 (394) T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhhc---Cc--cccCceEEEechhhhcCHHHHHHHHHHHHhCCCcC Confidence 1122233444444444332221111 11 11235778898888888888899999999999999 Q ss_pred HHHHHHHHcCC-CCHHHHHHHH-----HHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 472 VEEKVKLIHPK-WEDEEIQAEV-----KRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 472 ~~~~v~~~~~~-~~eeea~eev-----~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ..++.+++... ..+++.+.-. ..+.+.+ ..++ ..+|| T Consensus 347 ~NE~R~~~gl~p~~~~~gd~~~~~~n~~~~~~~~---~~~~-------~~kgg 389 (394) T protein:vir:62 347 PDNVADMLGFPKQNTKESQAIYISNDVTEIGKKE---ATDG-------SLGGG 389 (394) T ss_pred HHHHHHHhCCCCCCCCCCCeeecccccccccccc---cccc-------cCCCC Confidence 99988776322 2233322211 1111110 1111 23444 No 188 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=96.21 E-value=0.00087 Score=37.36 Aligned_cols=426 Identities=8% Similarity=-0.029 Sum_probs=161.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |+...+--+.+ .||.|.- --=+.++..+. ..++ -|++|-=+++..+++|-..+ T Consensus 92 ~~~~~~~~~~l-~~~~~~~-----F~Gy~~la~la-Q~~e--------------------yr~~~~~ia~e~~R~w~~~~ 144 (695) T protein:vir:36 92 LDFNGTSMDAL-SFVTSSG-----FPGFPTLVLLA-QLPE--------------------YRAMHEVLADECIRTWGEAI 144 (695) T ss_pred hcccccccccc-hhhhccC-----cchHHHHHHHh-hccc--------------------hhhHHHHHHHHhhcccceec Confidence 32211111122 3554421 00011111110 0011 12222224445555553333 Q ss_pred cCCcce-----EEeccccccc-hHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeE-E Q lcl|Aclame:pro 81 SGKPLS-----IDVTGVNGSK-DENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFW-I 153 (518) Q Consensus 81 ~~e~~~-----i~v~~~~~~~-d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~-P 153 (518) -++.-. +++.+++... +...-+.|+.-++.-++..+++++++.+-..||.++-...+++.-. .+..+ | T Consensus 145 ~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~-----l~~PL~~ 219 (695) T protein:vir:36 145 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQI-----MDTPLVP 219 (695) T ss_pred ccchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccc-----ccccccc Confidence 222111 2332222222 1122345666666667899999999999999999855444321100 00111 1 Q ss_pred --EE-EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 154 --DF-KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 154 --~~-~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) .. .-|...++..+ +.+. ++-..|...+ +... ..+.+...... T Consensus 220 ~~~~I~kGslKGl~Vi---------------Dp~~---------------vtP~~~n~~d----P~sp-dfgkP~~y~V~ 264 (695) T protein:vir:36 220 RPYTVPKGSFQGLRVV---------------EPYW---------------VTPNNYNSIN----PVAD-DFYKPSTWWMI 264 (695) T ss_pred ccccccCcceeeeEee---------------cccc---------------cccchhhhcc----chhh-ccCCCceEEEe Confidence 00 01112221111 1110 0000010000 0000 00000000000 Q ss_pred cccCcccce-eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHS-VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~-~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~ 309 (518) ...+..... ...+.+.|. .+++ ..+. .|+|....+.+-+++.+.+-....+=+..-...++ -.++.... T Consensus 265 G~kIH~SRL~~f~g~plPd--~LKp--~y~~-----~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~l-k~dla~aL 334 (695) T protein:vir:36 265 GTEVHATRLHTIVSRPVGD--MLKP--TYSF-----AGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGI-LMDLAQAL 334 (695) T ss_pred ceEEeeeeEEEecCCCchh--hhhc--cccc-----CcccHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHH-HHHHHHhh Confidence 000111111 111221111 1222 1112 49999999999999988876555443322221111 12222222 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccchH Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREVKA 388 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~TA 388 (518) .++....... .-.--+.|+...+..-. +++.+.++.++ +...-.-.-+..++..+.-.+|++.--| |.+..+..| T Consensus 335 ~~g~~~~l~~-R~eli~~~Rsn~G~~ll-Dk~~Eefeq~s--tslSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNA 410 (695) T protein:vir:36 335 MPGANVDLSM-RAELINRYRDNRNILFL-DKATEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNA 410 (695) T ss_pred cChhHHHHHH-HHHHHHHhcCccceEEE-ecCCcceEEEe--cccCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccc Confidence 2221100000 00001223333332211 12234444444 4444455566666777777777875444 655555434 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH------- Q lcl|Aclame:pro 389 TEIWSLQDATVRKIEKKK-RLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST------- 460 (518) Q Consensus 389 tEi~s~~~~t~~t~~~~~-~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~------- 460 (518) |- .++..-.|-.+..+| ..++..|+.++..+..- .++.. + .++++.|+.--..++.++|+. T Consensus 411 TG-E~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS-------~~G~i--d-pdi~~~fnPL~qmtd~EkAeI~~k~A~~ 479 (695) T protein:vir:36 411 SS-EGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLS-------LFGAV--D-PSIKWQWNALRELDDLEVAESRYKQAQS 479 (695) T ss_pred cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCC--C-CcceEEeCCCCCcCHHHHHHHHhhhhHH Confidence 31 112222444555444 34555555554443221 12222 2 268899998777777666655 Q ss_pred HHHHHhCCCCCHHHHHHHHcCC----CCH-HHHHHHHHHHH--HhccccCCCCch-hccCcCCCCC Q lcl|Aclame:pro 461 LNNMNSALAMSVEEKVKLIHPK----WED-EEIQAEVKRIY--LENAIGEVPDPE-AIGGMETKGG 518 (518) Q Consensus 461 ~~~~~~aG~~S~~~~v~~~~~~----~~e-eea~eev~rI~--~E~~~~~~~dp~-~~~~~~~~gG 518 (518) .+..+.+|+++..+.-.++.-+ +.. .++..+--... +.++.+...++. ..+.++..|| T Consensus 480 d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (695) T protein:vir:36 480 DVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGG 545 (695) T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCc Confidence 4455577888887766665211 110 01100000000 000000000010 1122333444 No 189 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=96.17 E-value=0.00091 Score=37.24 Aligned_cols=426 Identities=8% Similarity=-0.036 Sum_probs=162.6 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |+...+--+.+ .||.|.- --=+.++..+. ..+ .-|++|-=+++..+++|-..+ T Consensus 92 ~~~~~~~~~~l-~~~~~~~-----F~Gy~~la~la-Q~~--------------------eyr~~~~~ia~e~~R~w~~~~ 144 (695) T protein:vir:78 92 LDFNGTSMDAL-SFVTSSG-----FPGFPTLVLLA-QLP--------------------EYRAMHEVLADECIRTWGEAI 144 (695) T ss_pred hcccccccccc-hhhhccC-----cchHHHHHHHh-hcc--------------------chhhHHHHHHHHhhcccceec Confidence 32211111122 3554321 00001111110 001 112222224555555553333 Q ss_pred cCCcce-----EEeccccccc-hHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeE-E Q lcl|Aclame:pro 81 SGKPLS-----IDVTGVNGSK-DENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFW-I 153 (518) Q Consensus 81 ~~e~~~-----i~v~~~~~~~-d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~-P 153 (518) -++.-. +++.+..... +...-+.|+.-++.-++..+++++++.+-..||.++-...+++.-. .+..+ | T Consensus 145 ~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~-----l~~PL~~ 219 (695) T protein:vir:78 145 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQI-----MDTPLVP 219 (695) T ss_pred cccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccc-----ccccccc Confidence 222211 2222222222 1122345666666667899999999999999999855444321100 00111 1 Q ss_pred --EE-EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 154 --DF-KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 154 --~~-~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) .. .-|...++..+ +.+. ++-..|...+ +... ..+.+...... T Consensus 220 ~~~~I~kGslKGl~Vi---------------Dp~~---------------vtP~~~n~~d----P~sp-dfgkP~~y~V~ 264 (695) T protein:vir:78 220 RPYTVPKGSFQGLRVV---------------EPYW---------------VTPNNYNSIN----PVAD-DFYKPSTWWMI 264 (695) T ss_pred ccccccCcceeeeEee---------------cccc---------------cccchhhhcc----chhh-ccCCCceEEEe Confidence 00 01112221111 1110 0000010000 0000 00000000000 Q ss_pred cccCcccce-eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHS-VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~-~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~ 309 (518) ...+..... ...+.+.|. .+++ ..+. .|+|....+.+-+++.+.+-....+=+..-...++ -.++.... T Consensus 265 G~kIH~SRL~~f~g~plPd--~LKp--~y~~-----~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~l-k~dla~~L 334 (695) T protein:vir:78 265 GTEVHATRLHTIVSRPVGD--MLKP--TYSF-----AGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGI-LMDLAQAL 334 (695) T ss_pred ceEEeeeeEEEecCCCchh--hhhc--cccc-----CcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHH-HHHHHHhh Confidence 000111111 111221111 1222 1112 49999999999999988876655544332222221 12222222 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccchH Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREVKA 388 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~TA 388 (518) .++....... .-.--+.|+...+..-. +++.+.++.++ +...-.-.-+..++..+.-.+|++.--| |.+..+..| T Consensus 335 ~~g~~~~l~~-R~eli~~~Rsn~G~~ll-Dk~~Eefeq~s--tslSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNA 410 (695) T protein:vir:78 335 MPGANVDLSM-RAELINRYRDNRNILFL-DKATEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNA 410 (695) T ss_pred cChhHHHHHH-HHHHHHHhcCccceEEE-ecCCcceEEEe--cccCCHHHHHHHHHHHHHhhhcCchhhhhccCCccccc Confidence 2221110000 00001223333332211 12234444444 4444455566667777777777875444 655555434 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH------- Q lcl|Aclame:pro 389 TEIWSLQDATVRKIEKKK-RLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST------- 460 (518) Q Consensus 389 tEi~s~~~~t~~t~~~~~-~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~------- 460 (518) |- .++..-.|-.+..+| ..++..|+.++..+..- .++.. . .++++.|+.--..++.++|+. T Consensus 411 TG-E~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS-------~~G~i-d--pdi~~~fnPL~qmtd~EkAeI~~k~A~~ 479 (695) T protein:vir:78 411 SS-EGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLS-------LFGAV-D--PSIKWQWNALRELDDLEVAESRYKQAQS 479 (695) T ss_pred cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCC-C--CcceEEeCCCCCcCHHHHHHHHhhhhHH Confidence 31 112222444555444 34555565554443221 12222 2 268899998777777666655 Q ss_pred HHHHHhCCCCCHHHHHHHHcCC----CCH-HHHHHHHHHHH--HhccccCCCCch-hccCcCCCCC Q lcl|Aclame:pro 461 LNNMNSALAMSVEEKVKLIHPK----WED-EEIQAEVKRIY--LENAIGEVPDPE-AIGGMETKGG 518 (518) Q Consensus 461 ~~~~~~aG~~S~~~~v~~~~~~----~~e-eea~eev~rI~--~E~~~~~~~dp~-~~~~~~~~gG 518 (518) .+..+.+|+++..+.-.++.-+ +.. .++..+--... +.++.+...++. ..+.++..|| T Consensus 480 d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (695) T protein:vir:78 480 DVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGG 545 (695) T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCC Confidence 4455577888887766665211 110 01100000000 000000000010 1122334444 No 190 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=96.12 E-value=0.00098 Score=37.08 Aligned_cols=431 Identities=15% Similarity=0.107 Sum_probs=194.9 Q ss_pred CCcCchHHH-HHHHHh--cCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTR-FIKGWL--NGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~-~~~~w~--~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) =|-...... +..... .|.-- .+.++|.+|+.+... ++. ..+. ..|+.+.. T Consensus 29 dg~~~~~~~~~~g~~~~~e~~~~-~~~eLI~~YR~ma~~--pEv-d~Av-----------------------~eIVneai 81 (537) T protein:vir:10 29 DGSQPIVGGGYFGYSVDFDGTIR-NDHELITRYREMVLN--PEC-DSAV-----------------------DDVVNETI 81 (537) T ss_pred cccceeecccccccccccccccc-hHHHHHHHHHHHhhc--cch-hhHH-----------------------HHhhccee Confidence 000000000 000000 22211 245666666543311 111 0000 00110000 Q ss_pred H-HHcCCcceEEeccccc--cchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe-----EEEEEEcCC Q lcl|Aclame:pro 78 E-YISGKPLSIDVTGVNG--SKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR-----PSISVHSSS 149 (518) Q Consensus 78 ~-ll~~e~~~i~v~~~~~--~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~-----i~i~~v~ad 149 (518) = =-..+|.+|.+...+. +-.++..+.++.|+.--+|..+..+.+..+-+-|.++|.-++|..+ ..+.+++|- T Consensus 82 v~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fhKiid~k~pk~GI~ELr~lDPr 161 (537) T protein:vir:10 82 CGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLLDFDNRAYEIFRRWYVDGRLFFHKVIDPKKPRQGLVELRYVDPR 161 (537) T ss_pred EecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeeeCCc Confidence 0 0011233444433222 1235566777888888889999999999999999999999998542 457777887 Q ss_pred eeEEEEEcCcEEE-EEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccc Q lcl|Aclame:pro 150 QFWIDFKNNEPFR-FNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSY 228 (518) Q Consensus 150 ~~~P~~~~g~~~~-~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~ 228 (518) ++-+....-+.+. .+- +..+++. ++ .+.-.|.+|.-.+-...+.+... T Consensus 162 ~i~~vR~i~~~~~~~~~---~~~~~~~-v~-------------------~~~~eyf~ynp~g~~~~~~~~vk-------- 210 (537) T protein:vir:10 162 KIRKVTEYEAKRPEALR---TQDLNQQ-LT-------------------QQSASYFLYNPKGLKNSTNQGMK-------- 210 (537) T ss_pred cceeeEeecccCCccce---EEeccee-ee-------------------ecccceeeeccccccccCCCcee-------- Confidence 7755421100000 000 0000000 00 01111122211110000000000 Q ss_pred cccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH--HHHHHhccceeee-chhh Q lcl|Aclame:pro 229 LHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY--MREGEKTKTKIAA-SERM 305 (518) Q Consensus 229 ~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~~ 305 (518) ++. -.++|.- .--.+...+..+|-+..|+-.+..|=-.-+.+ .|-.|+-++|||- +-.= T Consensus 211 -----I~~----------dAI~y~h---SGl~d~n~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGn 272 (537) T protein:vir:10 211 -----IAP----------DSIAYCH---SGIQDLNKNMVLSHLHKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGN 272 (537) T ss_pred -----ccH----------hheeeec---ccceeCCCCeeeeeehhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCC Confidence 000 0111111 00122234567788888887777774443332 2444555677763 1111 Q ss_pred hccC------------------CCCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHHHH Q lcl|Aclame:pro 306 FRKK------------------VNKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETMEY 363 (518) Q Consensus 306 l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~ 363 (518) |++. -+..++ .-.+++.|+.+..++. .|+.+ ..|+.+ |...--.-...+.. T Consensus 273 LPk~KAeqYlr~iM~k~KNklVYDa~TG-----ev~ddrk~msMlEDyWLPRReGgrg-TEItTL-pGgqnlgem~DV~Y 345 (537) T protein:vir:10 273 LPKNKAEQYLREVMGRYRNKLVYDANTG-----EIKDDKKFMSMLEDFWLPRREGGRG-TEISTL-PGGQNLGELEDVKY 345 (537) T ss_pred CCchhHHHHHHHHHHhccceEEEeccCc-----eecccchhhhhhhhhcccccCCCcc-cceeec-cccCCcChHHHHHH Confidence 1110 011111 1133455555443332 12222 223322 23332334566677 Q ss_pred HHHHHHHHhCCCccccccCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCcee Q lcl|Aclame:pro 364 FAQKAVSKSGYNPATFNLGNR--EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIR 441 (518) Q Consensus 364 ~l~~i~~~~G~s~~tf~~d~~--~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~ 441 (518) +.+.+....+.+.+-+..+++ ..-++||....-+-...+.+.|..+..-+.++++.=|-|-.-. .. .-...-... T Consensus 346 F~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgii-t~--eeW~~i~~~ 422 (537) T protein:vir:10 346 FQKKLYKALNVPSSRLETETTFNIGRAAEITRDEVKFQKFIARLRKRFSELFVDLLKTQLILKGIC-SI--EEWEEMKEH 422 (537) T ss_pred HHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CH--HHHHHHhhc Confidence 778888888888888765432 1245677666655555666666666666666665544331100 00 000011134 Q ss_pred eEEEeCCCCCCCHHHHHH-------HHHHHH--hCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchh--c Q lcl|Aclame:pro 442 VIIEFPDPMSVNLNELSS-------TLNNMN--SALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEA--I 510 (518) Q Consensus 442 v~v~f~D~i~~d~~~~~~-------~~~~~~--~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~--~ 510 (518) |.++|...-.-.+...++ .++.+. -+...|.++..++. -.+||+|.++|-+.|++|....--++|.. . T Consensus 423 I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~I-Lr~tDeeI~~~~k~I~~E~k~~~~~~p~~~~~ 501 (537) T protein:vir:10 423 IQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKV-LKQTESEIKEIDKEIKQEIADGVIMDPQAMQA 501 (537) T ss_pred ceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHH-hccCHHHHHHHHHHHHHHhhCCCCCCcccccc Confidence 677776433333322222 222221 22356888776665 46899999999999999987765555543 2 Q ss_pred cCcCCCCC Q lcl|Aclame:pro 511 GGMETKGG 518 (518) Q Consensus 511 ~~~~~~gG 518 (518) ++|++-.+ T Consensus 502 ~~~~~~~~ 509 (537) T protein:vir:10 502 MEMGIGDE 509 (537) T ss_pred cccCCCCc Confidence 33332111 No 191 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=96.09 E-value=0.001 Score=36.98 Aligned_cols=375 Identities=11% Similarity=0.022 Sum_probs=156.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCC-CCcc-ccceecCchHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGY-VPTV-HDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~-~~~~~~~~l~~~i~~~~A~ 78 (518) ||++..+... +.... .....|..... ..+|+... .... .+..+..+--..+++.+|+ T Consensus 1 M~~f~~~~~~--------~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~ 59 (386) T protein:vir:48 1 MPIFNITNLA--------TESPP------------ISQGGFFDITD-PDFLSTLNGSEWVSAESALRNSDLFSIINQLSN 59 (386) T ss_pred Cccccccccc--------ccccc------------ccccccccccc-chhcccccCCceechhhhhcchHHHHHHHHHHH Confidence 8887643222 11000 00000000000 00111000 0001 0111112222245666666 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFK 156 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~ 156 (518) -+-.=|. .+- +......+.+--..-.....++..+...+..|.+++.+..+ +|++ .+..++++.+-+... T Consensus 60 ~ia~~p~--~~~------~~~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~ 131 (386) T protein:vir:48 60 DLATVKL--TAS------RKQLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRL 131 (386) T ss_pred hhccCce--eec------cchhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEc Confidence 6654443 332 11122222211111122233334455666778877766554 3443 456666666655321 Q ss_pred -cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 157 -NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 157 -~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) +|. .++|.. ..++...... . .+. T Consensus 132 ~~~~----------------~~~y~~-------------------------~~~~~~~~~~------~---------~~~ 155 (386) T protein:vir:48 132 DNKD----------------GIYYNI-------------------------TFDDPRIPPK------Q---------HVP 155 (386) T ss_pred CCCc----------------eEEEEE-------------------------EecCccccce------e---------Eec Confidence 111 111110 0000000000 0 000 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCCCc Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNKST 314 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~~~ 314 (518) .. -+.|++...++ +..+|+|.+.-+...+.....+-....+-|+.|. +..++ ........ T Consensus 156 ~~----------evih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii-----~~~~~~~~ 216 (386) T protein:vir:48 156 QG----------DVLHFKLLSVD----GGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGIL-----KIKGGGLL 216 (386) T ss_pred Cc----------cEEEecCCCCC----CceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEE-----EeCCCCCH Confidence 00 03445543222 2346999998888777666555544445556543 43333 21111100 Q ss_pred cccccCCCcchhheeeecCCcCCCC----CCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGTLDAGA----KLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATE 390 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~~~~~~----~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtE 390 (518) ...... .+.+..... ..+. +++..++.++.+....++++..+...+.|....|++|..++..+...++.+ T Consensus 217 e~~~~~----~~~~~~~~~--n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~e~ 290 (386) T protein:vir:48 217 DFKTKL----SRSRQAMKQ--MQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQGDQQSSLE 290 (386) T ss_pred HHHHHH----HHHHHHhhc--CCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHH Confidence 000000 000111000 0010 123346777777788889999999999999999999999986433222222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 391 IWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAM 470 (518) Q Consensus 391 i~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~ 470 (518) - . ...++.+|..++..+......... . ++.+++...+-.|....+..+.+++.+|++ T Consensus 291 ~---~----------~~~~~~~l~P~~~~ie~~l~~~l~---~-------~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~ 347 (386) T protein:vir:48 291 M---S----------LDLYNKAVSRYLRPFLSELSQKLS---C-------DVDADILPAVDPTGSNSVSRINSMVKSGTL 347 (386) T ss_pred H---H----------HHHHHHHHHHHHHHHHHHHHHhhc---c-------hhhcchhhhhccChHHHHHHHHHHHhCCCc Confidence 1 1 112233344444333322221111 0 122233333446677778888889999999 Q ss_pred CHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 471 SVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 471 S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) ++-++.+.+. +.+.+.++. +. +. .. ..|...|.-|+.. T Consensus 348 t~nE~r~~lg~~~~~~~~~~----~~--~~-~~--~~~~~gGd~~~~~ 386 (386) T protein:vir:48 348 AQNQGLYILQQAEILPKELP----EG--EN-PN--KTTLKGGEINGED 386 (386) T ss_pred CHHHHHHHhhcCCCCCccch----hh--cC-CC--CCccCCCCCCCCC Confidence 9999877652 233332221 11 11 11 1122222222222 No 192 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=96.07 E-value=0.0011 Score=36.91 Aligned_cols=399 Identities=10% Similarity=0.017 Sum_probs=156.9 Q ss_pred HHhc-CCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcccc-ceecC--------chHHHHHHHHHHHHcC Q lcl|Aclame:pro 13 GWLN-GKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHD-KLMNS--------GTGNEIVVVAAEYISG 82 (518) Q Consensus 13 ~w~~-g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~--------~l~~~i~~~~A~ll~~ 82 (518) --++ |+.- ...+.... .+ |-... ..|... .+... +..++ +-=..+++.+|+-+-. T Consensus 1 ~~~~~~~~~-~~p~~~e~-~~--------~~~~~---~~~~~~--~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~ 65 (518) T protein:vir:10 1 MLLANGQTL-SAPAMAEL-SP--------QMQDS---YYYAPA--VGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALAR 65 (518) T ss_pred CcccCceee-cCchhhhh-hh--------hhhcc---cccccc--cceecccccchhhHHHhhhHHHHHHHHHHHHhhcc Confidence 0111 1100 00000000 00 00000 011000 00000 00011 1113445555555544 Q ss_pred CcceEEeccccccchHHHHHHHHHHHhhcChHH---HHHHH-HHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE Q lcl|Aclame:pro 83 KPLSIDVTGVNGSKDENLTKQLKEALRIDNFDS---KSVKI-VELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFK 156 (518) Q Consensus 83 e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~---~~~~~-~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~ 156 (518) =|+.+--...+... +.....+..++..-+-+. .|.+. +...+..|.+++.+..+ +|++ .+..++++.+-+... T Consensus 66 lpl~l~~~~~~~~~-~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~ 144 (518) T protein:vir:10 66 LPVKCMFTSGDTET-EESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRN 144 (518) T ss_pred CceEEEEEcCCCce-eccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEc Confidence 34333211111111 111222333333222111 23333 34455568777766554 3454 456666666655421 Q ss_pred cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcc Q lcl|Aclame:pro 157 NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQL 236 (518) Q Consensus 157 ~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 236 (518) . +...++++ |....+..... ..+ .. T Consensus 145 ~---------------~~~~~~y~-------------------------~~~~~~~~~~~------~~~---------~~ 169 (518) T protein:vir:10 145 S---------------RTGRYEYY-------------------------FQAGAGVGTQL------VSF---------AD 169 (518) T ss_pred C---------------CCCEEEEE-------------------------EEecCCccceE------EEe---------cC Confidence 1 00011110 00000000000 000 00 Q ss_pred cceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCCC-c Q lcl|Aclame:pro 237 NHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNKS-T 314 (518) Q Consensus 237 ~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~~-~ 314 (518) . -+.|+++...+. ...|+|.+.-+...|.....+-....+-|+.|. ++-++- ....-. . T Consensus 170 ~----------eViHir~~s~dg----~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~-----~~~~ls~e 230 (518) T protein:vir:10 170 D----------EVVPIRFFNPDG----LERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLR-----HEKRLSEA 230 (518) T ss_pred C----------cEEEecCCCCCc----ccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEe-----cCCCCCHH Confidence 0 023455443332 235999988777776666555544555566654 333331 111000 0 Q ss_pred cccccCCCcchhheeeec-CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFK-GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIW 392 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~-~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~ 392 (518) ..... ...-.+.|.+.. ..--.--+++..++.++.+..+.++++..+...+.|....|++|..+++.+++ .+..|- T Consensus 231 ~~~~~-k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq- 308 (518) T protein:vir:10 231 AQQRL-REQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISA- 308 (518) T ss_pred HHHHH-HHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHH- Confidence 00000 000001111100 00000011223466677777788999999999999999999999999875433 222221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCH Q lcl|Aclame:pro 393 SLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSV 472 (518) Q Consensus 393 s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~ 472 (518) ... ..+..+|..++..+-.......... ....+.+.++.++-+..|.+++++.+.+++.+|+|+. T Consensus 309 -~~~----------~f~~~tL~P~l~~ie~~ln~~L~~~----~~~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~ 373 (518) T protein:vir:10 309 -QMR----------AFYRDTMAIPIARIQSAMDKYVGQY----WVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATP 373 (518) T ss_pred -HHH----------HHHHHHHHHHHHHHHHHHHHhhccc----ccCCceEEEechhhhccCHHHHHHHHHHHHhCCCcCH Confidence 111 1122233333333322221111111 1113456777778788999999999999999999999 Q ss_pred HHHHHHHcCC-CCHHHHHHHH-----HHHHH--h-----ccccCCCCchh----ccCcCCCCC Q lcl|Aclame:pro 473 EEKVKLIHPK-WEDEEIQAEV-----KRIYL--E-----NAIGEVPDPEA----IGGMETKGG 518 (518) Q Consensus 473 ~~~v~~~~~~-~~eeea~eev-----~rI~~--E-----~~~~~~~dp~~----~~~~~~~gG 518 (518) -++.+++... .++...++-. ..+.. . +....+++|.. .++....++ T Consensus 374 NE~R~~~Gl~pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 436 (518) T protein:vir:10 374 NEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPTS 436 (518) T ss_pred HHHHHHhCCCCCCCCCCCeeeecccceecccccccccCCCCCCCCCCCCcccccccccccccc Confidence 9987766321 2222232211 11100 0 00011111111 111111111 No 193 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=96.07 E-value=0.0011 Score=36.91 Aligned_cols=425 Identities=13% Similarity=0.066 Sum_probs=167.2 Q ss_pred CCcCc----hHHHH----HHHHhcCCCChhhHHhhHHHHhhccchh-hhhhhhhhhhhhhccCC-CCccccceecCchHH Q lcl|Aclame:pro 1 MGVWS----VMTRF----IKGWLNGKPNGSEPELIPKYLPLVPDNQ-KEWSKDSYLTSLWAQGY-VPTVHDKLMNSGTGN 70 (518) Q Consensus 1 ~~~~~----~~~~~----~~~w~~g~p~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~l~~ 70 (518) -++.- +|.+. +----.+++-. + .........+ ..+.. +..|-.++ .+...+.....++.. T Consensus 21 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~--~----~~~~~~~~~~~~g~~~----~~~~~~~~~l~~l~~~~~~npiv~ 90 (547) T protein:vir:63 21 IEVDDNYSIAIQQREQEQISKAMNNKEVA--Y----SQPVIGSMSANPGFKT----KPSIRNNQDLHGVLKKFGGNIILN 90 (547) T ss_pred cccccccchhhhhhhHHHHHHhhcccchh--h----hchhhheeeccccccc----CCccCChhHHHHHHHHhhcCHHHH Confidence 12111 11111 11111122210 0 0000000110 00000 00000000 000011122335555 Q ss_pred HHHHHHHHHHcCC---------c--ceEEeccccc---cchHHHHHHHHHHHhhc---------ChHHHHHHHHHHHHhh Q lcl|Aclame:pro 71 EIVVVAAEYISGK---------P--LSIDVTGVNG---SKDENLTKQLKEALRID---------NFDSKSVKIVELAGGS 127 (518) Q Consensus 71 ~i~~~~A~ll~~e---------~--~~i~v~~~~~---~~d~~~~~~l~~vl~dn---------~f~~~~~~~~e~~~a~ 127 (518) .+++..|+-|..- - ..|.+...+. ..++..-..+.+++..- .|...++..+...+.. T Consensus 91 ~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~~~lv~d~ll~ 170 (547) T protein:vir:63 91 AIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMY 170 (547) T ss_pred HHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHhh Confidence 6655555544321 0 1222221111 12222223344544322 2334455566677788 Q ss_pred CCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEE Q lcl|Aclame:pro 128 GVSAVKINIL-NGRP-SISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYS 204 (518) Q Consensus 128 G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ 204 (518) |.+++-+..+ +|++ .+..++|..+-+.-. +|.. .+...+|+. T Consensus 171 Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~-----------~~~~~~y~~------------------------ 215 (547) T protein:vir:63 171 DQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKI-----------PDNGNRFVQ------------------------ 215 (547) T ss_pred CCEEEEEEECCCCcEEEEEEecCceeEEEECCcccc-----------ccCceEEEE------------------------ Confidence 8888777665 4554 467777777766421 2211 000001100 Q ss_pred EEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEec-CcccCccccCCCCCcchhhhhHHHHHHHHH Q lcl|Aclame:pro 205 VIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLIN-NSPSNTRYPHLNLGESDLSQCTNYLFAVDY 283 (518) Q Consensus 205 ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~-n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~ 283 (518) +. ++...+ .+ ... . +.|++ |+.. .....++|+|.+..+...|..... T Consensus 216 -~~-~~~~~~---------~~---------~~~-------e---iih~r~n~~~--~~~~~~~G~Spi~~~~~~i~~~~~ 263 (547) T protein:vir:63 216 -VI-DQKIVA---------TF---------NAR-------E---MAFAVRNPRS--DIYATGYGYPELEIALKQFIAHEN 263 (547) T ss_pred -Ec-CCcEEE---------Ee---------ccc-------c---EEEecccCCC--CcccccccccHHHHHHHHHHHHHH Confidence 00 000000 00 000 0 12222 2111 112356799999888888876655 Q ss_pred HHHHHHHHHHhcc-ce--eeechhh-hccCCCCCccccccCCCcchhheeeecCCc-CC-CCCCCccceEecccccHHHH Q lcl|Aclame:pro 284 FFTVYMREGEKTK-TK--IAASERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTL-DA-GAKLNDMIQFMQGDFRDGSY 357 (518) Q Consensus 284 ~~s~~~~e~~~g~-~r--i~v~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~-~~-~~~~~~~i~~~~~~ir~~~~ 357 (518) +-.-...=|+.|. ++ |.++... +... ..... -..-...|.+..... .. -..++-.++.++.+..+.++ T Consensus 264 a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e-----~~~~l-k~~~~~~~~G~~nagk~~vl~~~g~~~~~l~~~~~d~qf 337 (547) T protein:vir:63 264 TEAFNDRFFSHGGTTRGILQIKAAQQQSQH-----ALEIF-KREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEF 337 (547) T ss_pred HHHHHHHHHHcCCCcceEEEecCCCCCCHH-----HHHHH-HHHHHHHhcCcccccccccccCCCceEEEcCCChhHHHH Confidence 5444444456654 33 2222211 1000 00000 000001111111000 00 00122346667778889999 Q ss_pred HHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccCCC Q lcl|Aclame:pro 358 RETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWSLQDATVRKIEKK-KRLIQNVYEQMLWDFLYLLTGGTNNKEKAI 435 (518) Q Consensus 358 ~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t~~t~~~~-~~~~~~~l~~li~~il~l~~~~~~~~~~~~ 435 (518) ++..+...+.|....|++|..+|+.+.+ .++.+.. +.++.++... ...++.+|.-++..+-.......... T Consensus 338 le~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~---s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~---- 410 (547) T protein:vir:63 338 EKWLNYLINVISALYGIDPAEINIPNNGGATGSKGG---SLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAE---- 410 (547) T ss_pred HHHHHHHHHHHHHHhCCCHHHcCccccccccccccc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---- Confidence 9999999999999999999999974322 1121111 1112222211 12344455555555544333222111 Q ss_pred cCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHc--CCCC--H---------------------HHHH- Q lcl|Aclame:pro 436 MRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH--PKWE--D---------------------EEIQ- 489 (518) Q Consensus 436 ~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~--~~~~--e---------------------eea~- 489 (518) ....+.++|+.....+..+.++.. ++..+|+|+.-++.+++. |... | .+++ T Consensus 411 --~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (547) T protein:vir:63 411 --FGDKYTFQFVGGDIKSELESVKIL-AEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQ 487 (547) T ss_pred --cCCceEEEeeccccccHHHHHHHH-HHHhCCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCCccccch Confidence 112466788877777777666644 466789999999887763 2110 0 0000 Q ss_pred HHHHHHHHhcc----ccCCCCchh--ccCcCCCCC Q lcl|Aclame:pro 490 AEVKRIYLENA----IGEVPDPEA--IGGMETKGG 518 (518) Q Consensus 490 eev~rI~~E~~----~~~~~dp~~--~~~~~~~gG 518 (518) +-...+.+..+ ...+++|.. ..+..+++| T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 522 (547) T protein:vir:63 488 SNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDG 522 (547) T ss_pred hhccccccccCCCCCCCCCCCCCCcccCCCcCccc Confidence 00111111111 111111110 111112222 No 194 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=96.01 E-value=0.0011 Score=36.75 Aligned_cols=382 Identities=11% Similarity=0.004 Sum_probs=141.9 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+.+ .|.-|. +|. .++-+. ..+-+..... . +.+ ..+.......-...++-+|+-+ T Consensus 1 mg~~~----~~~~~~--~~~----~~~~~~------~~~~~~~~~~-----~-~~~--t~~~~~~~~~v~~cv~~Ia~~i 56 (403) T protein:vir:10 1 MGFKS----WITEKL--NPG----QRIIRD------MEPVSHRTNR-----K-PFT--TGQAYSKIEILNRTANMVIDSA 56 (403) T ss_pred Ccchh----hhhhcc--chh----hhhhhc------ccccccccCC-----c-ccc--cHHHHHHHHHHHHHHHHHHHHH Confidence 77544 333332 232 111111 1010100000 0 000 0011111111222334444444 Q ss_pred cCCcceEEeccccc-cchHHHHHHHHHHHhh--cCh--HHHHHHHHH-HHHhhCCEEEEEEEECCeEEEEEEcCCeeEEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNG-SKDENLTKQLKEALRI--DNF--DSKSVKIVE-LAGGSGVSAVKINILNGRPSISVHSSSQFWID 154 (518) Q Consensus 81 ~~e~~~i~v~~~~~-~~d~~~~~~l~~vl~d--n~f--~~~~~~~~e-~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~ 154 (518) .+=|..+.-..... ..+.....-+..+|.. |.. ...|.+.+. .++-.|.+++.. +... +-.++++.+-+. T Consensus 57 a~~p~~v~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~--~~~~--l~~l~~~~~~v~ 132 (403) T protein:vir:10 57 AECSYTVGDKYNIVTYANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYW--DGTS--LYHVPAALMQVE 132 (403) T ss_pred hhCceeEeecccccccccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEE--eCce--eEeecCcceEEE Confidence 43333331110000 0000011123333432 211 123444444 444456655432 2221 222333332221 Q ss_pred EEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccC Q lcl|Aclame:pro 155 FKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) Q Consensus 155 ~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (518) - .+.+.+|.. .+. +.++ |+ + T Consensus 133 ~----------------~~~~~~~~~-~~~--------------~~~~---~~-----------------------~--- 152 (403) T protein:vir:10 133 A----------------DANKFIKKF-IFN--------------NQIN---YR-----------------------V--- 152 (403) T ss_pred E----------------cCCceEEEE-Eec--------------Ccee---ec-----------------------c--- Confidence 1 111111100 000 0000 00 0 Q ss_pred cccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCc Q lcl|Aclame:pro 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKST 314 (518) Q Consensus 235 ~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~ 314 (518) .+ +.+++....-....+...|+|.+.-+...+.....+-.--.+-|+.|...-.| +.....-.. T Consensus 153 -~e-----------iih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gi----l~~~~~l~~ 216 (403) T protein:vir:10 153 -DE-----------IIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLI----LETDEILNK 216 (403) T ss_pred -cc-----------eEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceE----EEeCCCCCH Confidence 00 01111110000011234599988887777766555444444556666543221 222111100 Q ss_pred cccccCCCcchhheeeecCCcC-C----CCCCCccceEec--ccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccch Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGTLD-A----GAKLNDMIQFMQ--GDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVK 387 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~~~-~----~~~~~~~i~~~~--~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~T 387 (518) ... +.-++.+........ . --+++-.++.++ ++..+.++.+..+...+.|....|++|..++....+ + T Consensus 217 e~~----~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~s-n 291 (403) T protein:vir:10 217 KLR----ERKQEELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDGGNNA-N 291 (403) T ss_pred HHH----HHHHHHHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCc-C Confidence 000 000011111110000 0 001112244444 345577889999999999999999999998643221 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCC--CCCCHHHHHHHHHHHH Q lcl|Aclame:pro 388 ATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDP--MSVNLNELSSTLNNMN 465 (518) Q Consensus 388 AtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~--i~~d~~~~~~~~~~~~ 465 (518) ..+. . ...++.+|..++..+........ .+.+.++++.- +..|.+++++.+.+++ T Consensus 292 ~e~~---~----------~~f~~~tl~P~~~~ie~~l~~~L----------~~~~~~d~~~~~~l~~D~~~~~~~~~~~~ 348 (403) T protein:vir:10 292 IRPN---I----------ELFYYMTIIPMLNKLTSSLTFFF----------GYKITPNTKEVAALTPDKEAEAKHLTSLV 348 (403) T ss_pred HHHH---H----------HHHHHHHHHHHHHHHHHHHHHhc----------CceeeeccchhhhcccCHHHHHHHHHHHH Confidence 1111 1 11122233333333322221110 12455566533 6678999999999999 Q ss_pred hCCCCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCc-CCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM-ETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~-~~~gG 518 (518) .+|+|+.-++.+.+. |-.+++.+.+-+ +....+. .+.+...|+- +.++| T Consensus 349 ~~G~lT~NE~R~~~gl~pi~~~~~d~~~--~p~n~~~--~~~~~~~~e~~~~~~~ 399 (403) T protein:vir:10 349 NNGIITGNEARSELNLEPLDDEQMNKIR--IPANVAG--SATGVSGQEGGRPKGS 399 (403) T ss_pred hCCCcCHHHHHHHhCCCCCCcccccccc--ccccccc--ccccCCCCcCCCCCCC Confidence 999999999877663 224444544332 1111110 0111110110 11111 No 195 >protein:vir:3139 Length: 599 # NCBI annotation: hypothetical protein # Family: family:all:1548 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640321;genbank:gi:21234402;genbank:GeneID:956054 Probab=95.97 E-value=0.0012 Score=36.63 Aligned_cols=482 Identities=12% Similarity=0.055 Sum_probs=197.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhh--HHhhHHHHhh---ccchhhhhhhh-hhhhhh----hccCCCCccccceecCchHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSE--PELIPKYLPL---VPDNQKEWSKD-SYLTSL----WAQGYVPTVHDKLMNSGTGN 70 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e--~~~~~~~~~~---~~~~~~~~~~~-~~~~~~----w~~~~~~~~~~~~~~~~l~~ 70 (518) |-+- +..++.=+.|--+... -+.+.+|.++ ..--.++|..- .|.+.. =++...||.+ ++++|-.. T Consensus 1 m~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~e~~~yi~~~~tr~t~~~~~~w~~--s~t~~k~~ 75 (599) T protein:vir:31 1 MSTD---IKTLQKMLEGRDDDRAFIDELVVLFTNMENARAQKDREDKELMDYIDATDTRKTSNSKLPFKN--STTINKLA 75 (599) T ss_pred Cccc---hHHHHHHhhccCchHHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhhcccccccCCCCccc--ccchHHHH Confidence 3322 1222222222111111 1122233221 11111223110 111110 0112235543 34444444 Q ss_pred HHHHHHHHHHcC----CcceEEeccccccch-----HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE---- Q lcl|Aclame:pro 71 EIVVVAAEYISG----KPLSIDVTGVNGSKD-----ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL---- 137 (518) Q Consensus 71 ~i~~~~A~ll~~----e~~~i~v~~~~~~~d-----~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d---- 137 (518) .|++.+-..+|+ ..-=+.+-+-+..++ +..+++++.=|...+|...+...+-+-...|-++.+.-+. T Consensus 76 ~~~~~l~a~~~~~~fp~~~w~d~~~~~~~~~~~~~~~~i~~yi~~Kl~e~~~~~~~~~~v~d~i~~G~~vat~~~er~~~ 155 (599) T protein:vir:31 76 HLHLMITTSYMEHLLPNRNWVDFVGFDNDSVNAEKREIARSYVRGKVEASNLEGVIERMVDDFAVRGFCVAHTRHVKRMT 155 (599) T ss_pred HHHHHHHHHHHhhhcCCccceEeeecCCchhHHHHHHHHHHHhhhhhhhcchHHHHHHHHhhhcccCceeEeeeEEEcce Confidence 466655554443 222233333332221 2234445555777788888888888888888887776542 Q ss_pred ---CC-------eEEEEEEcCCeeEEEEEcCcEEEEEEEEEE-E-ecC-------ceEEEEEEE-----Eeecccc-eee Q lcl|Aclame:pro 138 ---NG-------RPSISVHSSSQFWIDFKNNEPFRFNFFEEI-P-TSN-------KADIYYLVE-----SREIKQW-DKE 192 (518) Q Consensus 138 ---~~-------~i~i~~v~ad~~~P~~~~g~~~~~~f~~~~-~-~~~-------~~~~y~~lE-----~he~~~~-~~~ 192 (518) ++ .|+++.|.|..++|--.=+.+.++.|+-.. . +++ ...-|+-++ .|+.... .+. T Consensus 156 ~~~d~~v~~~~~~P~~ervsP~Di~~Dp~A~si~d~~fivRs~~Tk~~L~~l~~~~~~~~y~~d~~~~~~~~~~~~~~~~ 235 (599) T protein:vir:31 156 VTAENQVIKNYSGTVTERLSPSDVFWDVTADSLPKAAKCIRQLYTLGSLKREIEEGTFPLMSMEDFQKLREERRTIREAL 235 (599) T ss_pred eecccccccccccceEEeecccceeeCCCCCCCCcceeeeehhhhHHHHHHHhccCCccccchHHHHHHHhhccCCCccc Confidence 22 378999999999985333555555544321 1 111 000011111 0111100 000 Q ss_pred eee------------ccceEEEEEEEeccCCccccccccc--cccc-----cc-ccccccc---CcccceeecCCC-cce Q lcl|Aclame:pro 193 GKK------------LSGGFVTYSVIKIDGDKTTPISAER--LPEQ-----IT-SYLHTND---IQLNHSVSIGLK-SMG 248 (518) Q Consensus 193 ~~~------------~~~~~I~n~ly~~~~~~~v~~~~~~--~~~~-----~~-~~~~~~~---~~~~~~~~tg~~-~~~ 248 (518) ... .+.|.|... | ++..|.+-+.. .+.. ++ .+..+-+ +-.-...++.+. .|| T Consensus 236 ~d~~~~~~g~D~~~~d~~~~~~eY-~---~~~~VevLeywGd~ydee~d~~~~~~ViTi~g~~~liR~e~np~~~g~~Py 311 (599) T protein:vir:31 236 ADGYNGRRKFDSLHKKGYGSMMNY-I---NEGVVEVLTFMGDFYDEENDELWNNYEITVIDRKIIGRKQSKDTWDGSQNL 311 (599) T ss_pred cchhhhhhhccccccccccchhhh-c---ccchhhhhhhhhhhhcccCCccccceEEEEecCcEEeecccCCCCCCCCCe Confidence 000 000111000 0 00001000000 0000 00 0000000 000000122332 233 Q ss_pred EE--EecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCCcchh Q lcl|Aclame:pro 249 AY--LINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDED 326 (518) Q Consensus 249 ~~--~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~ 326 (518) +. |.|- ..|.||.+++..+.+.+..||.++-...+-++..=..+++-.+-+... ...+.+.. T Consensus 312 vv~~~~P~-------~~~~yG~G~l~~~~gaQ~~lN~~~Ng~iD~~~~~l~p~l~~~~dl~~e--------D~~~~P~~- 375 (599) T protein:vir:31 312 HIAVYEFQ-------KDTLCPIGPLHRLTGMQYKLDKRENFREDLHDRFLHPSLKKVGDVREK--------GMRGGPNH- 375 (599) T ss_pred EEEEeeee-------ccccCCCCCchhcchHHHHHHHHHHHhhhhhhhhhccccccccccccc--------CccCCCCc- Confidence 32 3332 247889999999999999999997776664433222122211111110 11112211 Q ss_pred heeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC-ccchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 327 YFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN-REVKATEIWSLQDATVRKIEKK 405 (518) Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~-~~~TAtEi~s~~~~t~~t~~~~ 405 (518) +|.. .....++.+.|..+.-+...-++.+...++..+|.++..-|..+ +..||+++......--..+.++ T Consensus 376 v~~~---------~d~~~vq~~~p~s~~~~a~~~is~~e~~mee~sGvp~~~~G~~~ag~~TA~~is~l~naa~~~~~~~ 446 (599) T protein:vir:31 376 VFEV---------EETGDVQYMTPPAEVLQPDNQLSITLQLMEDLSGAPKESIGQRTAGEKTKFEVQLLDQGQNKVFRRK 446 (599) T ss_pred ceee---------cCCCccccccCchhhhhHHHHHHHHHHHHHHhhccchhhcCCcccchhhHHHHHHHHhhhhhhHHHH Confidence 1111 01112455666554444444566666667888999998888864 4579999987776666666666 Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhccccC-CCcCCc------eeeE-------EEeCCCCCCCHHHHHHHHHHHHh---C Q lcl|Aclame:pro 406 KRLIQNV-YEQMLWDFLYLLTGGTNNKEK-AIMRDE------IRVI-------IEFPDPMSVNLNELSSTLNNMNS---A 467 (518) Q Consensus 406 ~~~~~~~-l~~li~~il~l~~~~~~~~~~-~~~~~~------~~v~-------v~f~D~i~~d~~~~~~~~~~~~~---a 467 (518) .+.|+.. |+.+++.+++....+...... ...+++ ++|+ +.+-..-..-..++.++.+.+.+ + T Consensus 447 vr~~e~~~lepll~~l~e~~~~f~D~~~tiri~~~e~~~~~f~~i~redl~~~~~~v~~Ga~~v~ere~~~q~l~~il~~ 526 (599) T protein:vir:31 447 VKKFERELLTPVLNDYLEQGRNHLDASDTIKTFNSELGTATFLDITADDLNLNGQMVAQGATLFAEKANTLQNLNAILGG 526 (599) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccceeeecccccceeeEEeehhhhhCCeeeeechhhHHHHHHHHHHHHHHHhcc Confidence 6666665 455888777766543211000 000110 1111 11111111112334443333321 1 Q ss_pred --C--C---CCHHH---HHH---HHc-CC-----CCHHHHHHHHHH----HHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 468 --L--A---MSVEE---KVK---LIH-PK-----WEDEEIQAEVKR----IYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 468 --G--~---~S~~~---~v~---~~~-~~-----~~eeea~eev~r----I~~E~~~~~~~dp~~~~~~~~~gG 518 (518) | + |+.+. +|. .++ +. ..-.+.+.++.- +++|+..... ....|+-+.+.| T Consensus 527 ~~~q~~~P~~~~k~l~~~l~~~~~l~~~~~~~~~va~~eqq~~~~m~Q~~lq~~~~~~~~--~~~~~~~~~~~~ 598 (599) T protein:vir:31 527 PLGAALAPHMSRTKLFNAVEYLGDLDAYGIFTFGIGVQEDQQLARMAQKSTQQTEETALT--QEEVGGPTTDTG 598 (599) T ss_pred cCCCccchhhHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHHHHhHhhhhh--hhhcCCCCcccC Confidence 1 1 33221 122 121 11 111222333322 2333322222 234577777777 No 196 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=95.93 E-value=0.0012 Score=36.53 Aligned_cols=429 Identities=10% Similarity=0.012 Sum_probs=164.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHH----hhccchhh---hhhhhhhhhhhhccCCC-CccccceecCchHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYL----PLVPDNQK---EWSKDSYLTSLWAQGYV-PTVHDKLMNSGTGNEI 72 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~----~~~~~~~~---~~~~~~~~~~~w~~~~~-~~~~~~~~~~~l~~~i 72 (518) ||....=++.++. .+-.. +.+.+.. +.+...+- .+....+.+..+..++. +..-+...+-++...+ T Consensus 27 ~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~iv~~~ 100 (574) T protein:vir:80 27 MHLREIDTNVVNN----EPYSM--ESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHKTLKKFGNNIILNAI 100 (574) T ss_pred cccchhhhhhhhc----cCCCH--HHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHHHHHhhccChhHHHH Confidence 8988888888843 12111 1111110 11100000 00000000000000000 0000011112233333 Q ss_pred HHHHHHHHc------CC-----cceEEeccccc---cchHHHHHHHHHHHhhc---------ChHHHHHHHHHHHHhhCC Q lcl|Aclame:pro 73 VVVAAEYIS------GK-----PLSIDVTGVNG---SKDENLTKQLKEALRID---------NFDSKSVKIVELAGGSGV 129 (518) Q Consensus 73 ~~~~A~ll~------~e-----~~~i~v~~~~~---~~d~~~~~~l~~vl~dn---------~f~~~~~~~~e~~~a~G~ 129 (518) .+..++-|+ ++ |..|.....+. .........|..++.+. .|..-++..+...+..|. T Consensus 101 i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gn 180 (574) T protein:vir:80 101 INTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQ 180 (574) T ss_pred HHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCC Confidence 333333332 11 12222111111 11112223344555431 233445555666777899 Q ss_pred EEEEEEEE-CCeE-EEEEEcCCeeEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEE Q lcl|Aclame:pro 130 SAVKINIL-NGRP-SISVHSSSQFWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVI 206 (518) Q Consensus 130 ~~~k~~~d-~~~i-~i~~v~ad~~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly 206 (518) +++.+..+ +|+| .+-.++|..+.+.... |.. .++..+|+. + T Consensus 181 ayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~~-----------~~~~~~y~~-------------------------~ 224 (574) T protein:vir:80 181 VNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGKL-----------IKNGERFVQ-------------------------V 224 (574) T ss_pred eEEEEEECCCCcEEEEEEEcCceeEEEEcCcccc-----------ccCceEEEE-------------------------E Confidence 88877665 3554 4666777777665321 110 001111110 0 Q ss_pred eccCCccccccccccccccccccccccCcccceeecCCCcceEEEec-CcccCccccCCCCCcchhhhhHHHHHHHHHHH Q lcl|Aclame:pro 207 KIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLIN-NSPSNTRYPHLNLGESDLSQCTNYLFAVDYFF 285 (518) Q Consensus 207 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~-n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~ 285 (518) . .+... ..+ .... +.|++ ++. ......++|+|.+.-+...|.....+- T Consensus 225 ~--~g~~~--------~~~----------------~~~e---iih~~~~~~--~~~~~~~~G~spi~~a~~~i~~~~~a~ 273 (574) T protein:vir:80 225 I--DNRIV--------AKF----------------NERE---LAFAVRNPR--ADIEVGQYGYPELEIALKQFIAHENTE 273 (574) T ss_pred e--CCceE--------EEE----------------cccc---EEEEeccCC--CCcccccccccHHHHHHHHHHHHHHHH Confidence 0 00000 000 0000 12222 221 122235679999988888887665554 Q ss_pred HHHHHHHHhcc-ceeee--chhh-hccCCCCCccccccCCCcchhheeeecCCcC--CCCCCCccceEecccccHHHHHH Q lcl|Aclame:pro 286 TVYMREGEKTK-TKIAA--SERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTLD--AGAKLNDMIQFMQGDFRDGSYRE 359 (518) Q Consensus 286 s~~~~e~~~g~-~ri~v--~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~--~~~~~~~~i~~~~~~ir~~~~~~ 359 (518) .-..+-|+.|. ++-++ +... +.. ..... ....-...|.+...... .-.+.+..++.++....+.++++ T Consensus 274 ~~~~~~f~ng~~p~gil~~~~~~~ls~-----e~~~~-lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfle 347 (574) T protein:vir:80 274 VFNDRFFSHGGTTRGILHVKTGQQQSQ-----QALDI-FRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFEK 347 (574) T ss_pred HHHHHHHhccCCCceEEEeCCCCCCCH-----HHHHH-HHHHHHHHhccccccccceeecCCCceEEEccCChhHHHHHH Confidence 44444556654 34222 1110 000 00000 00000011211110000 00012234666777888999999 Q ss_pred HHHHHHHHHHHHhCCCccccccCCcc-chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCcC Q lcl|Aclame:pro 360 TMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWSLQDATVRKIEK-KKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMR 437 (518) Q Consensus 360 ~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t~~t~~~-~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~ 437 (518) ..+...+.|....|++|..+|+.+.+ .+++.+.+.+ +.+... ....++.+|..++..+-......... . T Consensus 348 ~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n---~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~---~--- 418 (574) T protein:vir:80 348 WLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLN---EGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVA---E--- 418 (574) T ss_pred HHHHHHHHHHHHhCCCHHHhccccccccccccccccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---h--- Confidence 99999999999999999999874322 2222221111 111111 12223334444444433332221111 1 Q ss_pred CceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcC-CCCH-H-----------------------HHHHHH Q lcl|Aclame:pro 438 DEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHP-KWED-E-----------------------EIQAEV 492 (518) Q Consensus 438 ~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~-~~~e-e-----------------------ea~eev 492 (518) ....+.+.|+..-..+..+..+. .+.+.+|+|+.-++.+++.. .... + ..++.. T Consensus 419 ~~~~~~~~f~~~d~~~~~~~~~~-~~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 497 (574) T protein:vir:80 419 FGEKYQFQFRGGDLSAQLDKLKI-IEQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRL 497 (574) T ss_pred cCCceEEEecccchhhHHHHHHH-HHHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhccc Confidence 11234566665555555555443 34567899999998776521 1110 0 000000 Q ss_pred HHHHHhccccCCCC--chhccCcCCCCC Q lcl|Aclame:pro 493 KRIYLENAIGEVPD--PEAIGGMETKGG 518 (518) Q Consensus 493 ~rI~~E~~~~~~~d--p~~~~~~~~~gG 518 (518) .......+.....+ +.+...-+..+. T Consensus 498 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 525 (574) T protein:vir:80 498 NRLLELSGGDVEQPEPEEPKDSQNDTDV 525 (574) T ss_pred cccccccCCCCCCCCCCCCCCccccccc Confidence 00000000000000 000000000000 No 197 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=95.91 E-value=0.0013 Score=36.48 Aligned_cols=395 Identities=11% Similarity=0.052 Sum_probs=169.1 Q ss_pred CCcCchHHHHHH--HHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIK--GWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 1 ~~~~~~~~~~~~--~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ 78 (518) |-.-+.+. -|+ .|++..-...+-..........+.- ...... ....+.+..+ .+....+.-..+++.+|+ T Consensus 1 ~~~~~~~~-~~~~m~~F~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~-----~~~~~~~~v~~cI~~ia~ 72 (413) T protein:vir:96 1 MPGVSEIR-KDKNLKFFNNKRSPTEESKAKDEIPKAPQV-VMTLPN-FFKELISDGY-----TKLSDSPEVRMAVDCIAD 72 (413) T ss_pred CCccchhh-hhhcCCccccCCCcchhhhhhccccccccc-cccchh-hHhhhccchh-----HHHhhchHHHHHHHHHHH Confidence 55444444 332 2554332111111110000000000 000000 0001111111 111223344456677777 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHh--hc---ChHHHHHHHHHHHHhhCCEEEEEEEEC-C-eE-EEEEEcCCe Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALR--ID---NFDSKSVKIVELAGGSGVSAVKINILN-G-RP-SISVHSSSQ 150 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn---~f~~~~~~~~e~~~a~G~~~~k~~~d~-~-~i-~i~~v~ad~ 150 (518) -+..-+..+--...+. .+.....+..+|. -| ....-++..+...+..|.+++.+..+. | ++ .+..++++. T Consensus 73 ~ia~~~~~~~~~~~~~--~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~ 150 (413) T protein:vir:96 73 LVSNMTIQLMQNGETG--DKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYK 150 (413) T ss_pred hhccCceEEEEecCCC--ccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCce Confidence 7765554432111111 1111112222221 12 123334555666777788888776653 2 33 466666666 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +-+....+. +++... ..+..|. T Consensus 151 v~~~~~~~~-----------------~~y~~~------------------~~~~~~~----------------------- 172 (413) T protein:vir:96 151 VTFNVSDDD-----------------LDYSIT------------------FDNKEYD----------------------- 172 (413) T ss_pred eEEEEcCCe-----------------EEEEEe------------------ecCcEEc----------------------- Confidence 655422221 111000 0000000 Q ss_pred cccCcccceeecCCCcceEEEec-CcccCccccCCC-CCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhcc Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLIN-NSPSNTRYPHLN-LGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRK 308 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~-n~~~N~~~~~sP-lG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~ 308 (518) +.+ +.|++ +..+ .++ .|.|.+.-+...+......-.....-|+.|...-. ++.. T Consensus 173 ----~~e-----------vih~k~~~~~-----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~g----il~~ 228 (413) T protein:vir:96 173 ----PST-----------LLHFVLNPSI-----ERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNL----IVSV 228 (413) T ss_pred ----hhh-----------EEEEeccCCC-----CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccE----EEEe Confidence 000 12333 2211 123 39998888887777665554444455666553211 1111 Q ss_pred CCCCCccccccCCCcchhheeeec--CCcCCCCCCCccceEec-ccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc Q lcl|Aclame:pro 309 KVNKSTDKEEWSMNVDEDYFMQFK--GTLDAGAKLNDMIQFMQ-GDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE 385 (518) Q Consensus 309 ~~~~~~~~~~~~~d~d~~~~~~~~--~~~~~~~~~~~~i~~~~-~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~ 385 (518) ...-...........-.+.|.+.. +..-.-..+...++.+. ......++++..+...+.|....|++|..+|... T Consensus 229 ~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~-- 306 (413) T protein:vir:96 229 DSDSDELSDEEGRENFEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVGT-- 306 (413) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCc-- Confidence 111000000000000001111110 00000001111223332 2455778888888888899999999999997532 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) +++-.. ...++.+|..++..+......... .....+.+++++.+..|.+++++.+.+++ T Consensus 307 --~~~~~~------------~~~~~~~l~P~~~~ie~~ln~~ll-------~~~~~~~fd~~~ll~~d~~~~~~~~~~~~ 365 (413) T protein:vir:96 307 --YNKDEF------------NNFINTKIMSIAQVIQQTYNKLIV-------EEDMYFSLNPRSLYNYSLTEMVSAGAQMT 365 (413) T ss_pred --chHHHH------------HHHHHHHHHHHHHHHHHHHHHhhC-------CCCcEEEEechhhhccCHHHHHHHHHHHH Confidence 222111 123444455555554444332211 12356788888888999999999999999 Q ss_pred hCCCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+|+|+.-++.+++. +.. +..++-+ -- ....+-....+..+.+|| T Consensus 366 ~~G~~t~NE~R~~~g--~~p~~~gd~~~----~~--~n~~~~~~~~~~~~~~~~ 411 (413) T protein:vir:96 366 QLNALRRNEFRNWVG--MPPDAEMDDLL----VL--ENYLQQKDLVNQKKLIQD 411 (413) T ss_pred hCCCcCHHHHHHHhC--CCCCCCcceee----ec--ccccchhhcccccCCCCC Confidence 999999999877662 322 2222111 00 011111122233455666 No 198 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=95.89 E-value=0.0013 Score=36.41 Aligned_cols=420 Identities=13% Similarity=0.075 Sum_probs=193.7 Q ss_pred CCc-CchHHHHHHHHh--cCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGV-WSVMTRFIKGWL--NGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~-~~~~~~~~~~w~--~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) ++- ......+-+..+ .+.+ ..+.++|.+|+.+.. .++.. .+..... -..-....... T Consensus 46 ~~~~~~~~~g~~~~~~~~e~~~-~~~~eLI~~YR~ma~--~pEvd-~Av~eIV-neaiv~d~~~~--------------- 105 (521) T protein:vir:65 46 DNSPASSWNSLTQQFYSTDQKI-STTKQLVNTYRGLMN--NHEVE-NAVQNIV-NDAIVFEEGHE--------------- 105 (521) T ss_pred CCccccccccceeeeccccchh-hhHHHHHHHHHHHhh--ccchh-hHHHHhh-cceeEecCCCc--------------- Confidence 111 111111112222 2222 145677777776532 12210 1100000 00001111112 Q ss_pred HHHcCCcceEEecccc--ccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----CeEEEEEEcCCee Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVN--GSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN----GRPSISVHSSSQF 151 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~--~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----~~i~i~~v~ad~~ 151 (518) |.++.+...+ .+-.++..+..+.|+.--+|..+..+.+..+-+-|.++|...++. |=..+.+++|-++ T Consensus 106 ------pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~pk~GI~ELr~lDPr~i 179 (521) T protein:vir:65 106 ------VVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPRNL 179 (521) T ss_pred ------eEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCccccceeeeeeCCcce Confidence 2333332221 122355677788888888899999999999999999999988763 2245677777776 Q ss_pred EEEEEcCcEEEEEEEEEEEecCc--eEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 152 WIDFKNNEPFRFNFFEEIPTSNK--ADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 152 ~P~~~~g~~~~~~f~~~~~~~~~--~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) -+... ..+.+. ..++ +++..|-+|.-........... ......+ T Consensus 180 ~~vr~------------i~k~~~~~~~v~-------------------~~~~e~f~Y~~~~~~~~~~g~~--~~~~~~v- 225 (521) T protein:vir:65 180 EYVRE------------IITEDTPEGKIY-------------------KATKEYFIYTVGNSSYCAGGQV--FSPNSRV- 225 (521) T ss_pred eeeee------------ecccccCCccee-------------------cceeeeeeeecCCcceecccee--ecCCcce- Confidence 66422 111111 0111 1112222231100000000000 0000000 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH--HHHHHhccceeee-chhhh Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY--MREGEKTKTKIAA-SERMF 306 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~~l 306 (518) -++. -.++|.- .+-.+.....=+|-+..|+-.+..|=-.-+.+ .|-.|+-++|||- +-.=| T Consensus 226 ---kI~~----------dAI~y~h---SGl~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnl 289 (521) T protein:vir:65 226 ---KIPR----------SAITYAH---SGLMDCDDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNM 289 (521) T ss_pred ---eech----------hheeeee---ccceeCCCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCC Confidence 0000 0111211 11122222223466666666666663333332 2444566677763 11111 Q ss_pred ccC-------------C-----CCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHHHHH Q lcl|Aclame:pro 307 RKK-------------V-----NKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETMEYF 364 (518) Q Consensus 307 ~~~-------------~-----~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~~ 364 (518) ++. . +..++. ..+++.++.+..++. .|+.+ ..|+.+ |...--.-.+.+..+ T Consensus 290 Pk~KAeqYl~~im~k~kNklvYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrg-TEItTL-pGgqnlgem~DV~YF 362 (521) T protein:vir:65 290 NNRKAAQHMNSVAQSFKNRVVYDASTGK-----LKNQQANLSMTEDYWLQRRDGKAI-TDVTTL-PGASGMSDIDDIRYF 362 (521) T ss_pred CchhHHHHHHHHHHhcCceeEeeccccc-----ccccccccchhhhhcccccCCCCc-cceeec-ccCCCcChHHHHHHH Confidence 110 0 111111 123444554433332 12222 223332 232333345666777 Q ss_pred HHHHHHHhCCCccccccCC-cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCC-- Q lcl|Aclame:pro 365 AQKAVSKSGYNPATFNLGN-RE---VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRD-- 438 (518) Q Consensus 365 l~~i~~~~G~s~~tf~~d~-~~---~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~-- 438 (518) .+.+....+.+.+-+..++ +. .-++||....-+-...+.+.|..+..-+.++++.=|-| ++.... T Consensus 363 ~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLil---------Kgiit~ee 433 (521) T protein:vir:65 363 NRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFSKFIRTLQSQFSEVLRDPLKYNLIL---------KNVITEDD 433 (521) T ss_pred HHHHHHHhCCCceeccCCCCcceeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hcCCCHHH Confidence 7888888888888875432 12 24667766665555566666666666666666554433 222111 Q ss_pred ----ceeeEEEeCCCCCCCHHHHHH-------HHHHHH--hCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCC Q lcl|Aclame:pro 439 ----EIRVIIEFPDPMSVNLNELSS-------TLNNMN--SALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVP 505 (518) Q Consensus 439 ----~~~v~v~f~D~i~~d~~~~~~-------~~~~~~--~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~ 505 (518) ...|.++|...-.-.+...++ .++.+. -+...|.++..+.. -.+||+|.++|-+.|++|....--+ T Consensus 434 w~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~S~dyi~k~I-Lr~tDeei~~~~k~I~~E~~~~~~~ 512 (521) T protein:vir:65 434 WDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDI-LKYTDDQMDTEKKQIEEEANDPRFK 512 (521) T ss_pred HHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH-hccCHHHHHHHHHHHHHhhhCCCCC Confidence 123677776433333322222 222221 12356888877665 3689999999999999998877666 Q ss_pred Cch-hccCc Q lcl|Aclame:pro 506 DPE-AIGGM 513 (518) Q Consensus 506 dp~-~~~~~ 513 (518) +|. ..++| T Consensus 513 ~p~~~~~~f 521 (521) T protein:vir:65 513 QTPDEIEDF 521 (521) T ss_pred CCcccccCC Confidence 664 55666 No 199 >protein:vir:80211 Length: 514 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522882;genbank:gi:158345175;genbank:GeneID:5687474 Probab=95.87 E-value=0.0013 Score=36.34 Aligned_cols=452 Identities=9% Similarity=0.008 Sum_probs=164.0 Q ss_pred HHHHH-HHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhc--cCCCCccccceecCchHHHHHHHHHHHHcCC Q lcl|Aclame:pro 7 MTRFI-KGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWA--QGYVPTVHDKLMNSGTGNEIVVVAAEYISGK 83 (518) Q Consensus 7 ~~~~~-~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e 83 (518) |.+.. +.|-.- + +..+....++..+-.+.+.+.. .....+.+..+.-=+-+...++.+|+-|.+- T Consensus 1 m~~~~~~l~~k~--~----------R~~~e~~w~e~a~~~lP~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ 68 (514) T protein:vir:80 1 MRQQASAMWAEY--R----------DSTAIRKAEDFAKFTIASLMVDPLDKTHQAEVVEYDFQSAGAFLVNNLTAKLALT 68 (514) T ss_pred CccchHHHHHHh--h----------cchHHHHHHHHHHHhcccccCCCCCCcccccccccccchhHHHHHHHHHHHHHhh Confidence 33333 122100 0 0111111111111112211110 0001111111110123555666666555443 Q ss_pred c-----ceEEecccccc------ch---HHHH-------HHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEE Q lcl|Aclame:pro 84 P-----LSIDVTGVNGS------KD---ENLT-------KQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPS 142 (518) Q Consensus 84 ~-----~~i~v~~~~~~------~d---~~~~-------~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~ 142 (518) . +=+.+...+.. .+ ..++ ..+...|..++|+..+.++.....+.|.+++. .+++.-. T Consensus 69 ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~--~~~~~~~ 146 (514) T protein:vir:80 69 LFPPGRPSFQIELDDTLQELAAANGIDQSELHSRTADLERRATRRLFVNASLSKLHRILKLLVVTGNALFY--REPGTGK 146 (514) T ss_pred hcCCCCcccccccCchhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEE--EecCCCc Confidence 2 22333322210 00 1122 23556677899999999999999999998755 4444444 Q ss_pred EEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCc-eEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccc Q lcl|Aclame:pro 143 ISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNK-ADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAER 220 (518) Q Consensus 143 i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~-~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~ 220 (518) +..++-..|+-.-+ +|++..+++-.++....- ..+-.-++....+. ..+..-.|.+.+|+-.+.+ . + T Consensus 147 ~~~~pl~~y~v~~d~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~v~v~~~v~~~~~~~-~-----~ 215 (514) T protein:vir:80 147 MLVWTMQSYTVRRTSHGDPAVVVLRQQMPFRELTPEIQADAQAKQIAK-----RDSDKCDLYTVIEWQPTPN-G-----K 215 (514) T ss_pred EEEEEcCeEEEeeCCCcCeEEEEeeeeecHHHhhhhhhhhhhhhhccC-----CCCCceEEEEEEEeecCCC-C-----e Confidence 55566566555433 467666554333221000 00000000000000 0000011222233221110 0 0 Q ss_pred cccccccccccccCccccee-ecCC---CcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhc Q lcl|Aclame:pro 221 LPEQITSYLHTNDIQLNHSV-SIGL---KSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR-EGEKT 295 (518) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~tg~---~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~-e~~~g 295 (518) . ..+ +.+++..... ..+. ..|+++.--+ ...++.||+|--..+.+-++.|+..--.... ..... T Consensus 216 ~----~sv--~~e~~g~~i~~es~y~~~e~P~i~~Rw~-----~~~ge~YGrgp~~~al~D~k~L~~l~~~~l~~~~~a~ 284 (514) T protein:vir:80 216 R----CAV--WHELEGKRVGPESSYPAHLCPYVPVAWN-----VPDGEHYGRGYVEEYSGDFARLSILSERLGLYEFEAL 284 (514) T ss_pred E----EEE--EEeccceeecccCccccccCCeeeeeeE-----ecCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 0 000 0001100001 1111 1233322212 2346778999999999999999865443333 33445 Q ss_pred cceeeechhh-hccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccc--ccHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 296 KTKIAASERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD--FRDGSYRETMEYFAQKAVSKS 372 (518) Q Consensus 296 ~~ri~v~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--ir~~~~~~~i~~~l~~i~~~~ 372 (518) +....|+++- .+...- .+.....++ +|.. +.+..++.. .....-.+.|+.+-+.|.... T Consensus 285 ~~~~~v~~~g~~~~~~l---------~~~~~g~~v-------~g~~--~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aF 346 (514) T protein:vir:80 285 SLLNLVDEAKGGAVDDY---------RDAETGDFV-------PGQV--GSVASYERGDYNKIAQASASVESIVMRLNRAF 346 (514) T ss_pred CCCceeCcccccchhhh---------cccCCceee-------cCCC--ccceeeecCcccchHHHHHHHHHHHHHHHHHH Confidence 5555555432 221110 011111111 1111 123333221 122223344444444443322 Q ss_pred CCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCC- Q lcl|Aclame:pro 373 GYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLI-QNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPM- 450 (518) Q Consensus 373 G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~-~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i- 450 (518) +--.. .-++..+|||||..+.+...+...-.-..+ .+.|..++.-++.++........ +..++.-+.+++--++ T Consensus 347 -ml~~~-~rd~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~il~r~~~g~l--P~~p~~l~~~~~vs~la 422 (514) T protein:vir:80 347 -MYTGQ-VRDAERVTVEEIRTVAEEAENLLGGVYSLLAETLQAPLAYLTMYEASRGNGGML--LGIAQGVYRPSIITGIP 422 (514) T ss_pred -hhhcc-CCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCC--CCCCchhhcceeeecHH Confidence 10001 124455899999888877666555433333 23444555555555421111111 2222223334332121 Q ss_pred --CCC--HH---HHHHHHHHHHhCC--C---CCHHHHHHHH---cC------CCCHHHHHHHHHHHHHhccccCCCCchh Q lcl|Aclame:pro 451 --SVN--LN---ELSSTLNNMNSAL--A---MSVEEKVKLI---HP------KWEDEEIQAEVKRIYLENAIGEVPDPEA 509 (518) Q Consensus 451 --~~d--~~---~~~~~~~~~~~aG--~---~S~~~~v~~~---~~------~~~eeea~eev~rI~~E~~~~~~~dp~~ 509 (518) ... .+ ..++.++.+.... + +-...+++.+ .+ --++|+++..-+|.++.+.... .-.. T Consensus 423 ~l~r~~~~~~l~~~~~~i~~l~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~i~~~~e~~~~~~~~~~~~~~~~~--~~~~ 500 (514) T protein:vir:80 423 ALTRNIETANILRATQEASAIVPALVQLSKRFDPEKLVERIFANNSVDLSTLSKDPDVVAAEAEQEAALAQQQL--DVAS 500 (514) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHhCCCHhhccCCHHHHHHHHHHHHHHHHHHH--HHHH Confidence 111 11 1111222211110 1 2244444443 10 0134433333333322111110 0011 Q ss_pred ccCcCCCCC Q lcl|Aclame:pro 510 IGGMETKGG 518 (518) Q Consensus 510 ~~~~~~~gG 518 (518) .+..++-|. T Consensus 501 ~~~~~~~~~ 509 (514) T protein:vir:80 501 GALAAETSA 509 (514) T ss_pred HHHHHhhhc Confidence 112222222 No 200 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=95.84 E-value=0.0014 Score=36.27 Aligned_cols=392 Identities=10% Similarity=0.039 Sum_probs=164.3 Q ss_pred CCcCc--hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWS--VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 1 ~~~~~--~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ 78 (518) |-+-. .+++.+|.|+.|.-- . .+.. ....+. .. ....++.... .....+...---.+++.+|+ T Consensus 8 ~~~~~~~g~~~~~~~~~~~~~~-~----~~~~-~~~~~~------~~-~~~~~~~~~v--~~~~al~~~~v~~cv~~Ia~ 72 (424) T protein:vir:18 8 IDLRTNNGWWARLQSWFVGGRL-V----TPNQ-GSQTGP------VS-AHGHLGDSSI--NDERILQISTVWRCVSLIST 72 (424) T ss_pred EeecCCCchHHHHHhhhccccc-c----cccc-cccccc------cc-cccccccccc--cHHHhhccHHHHHHHHHHHH Confidence 22211 245667888865210 0 0000 000000 00 0000010000 11111222112234555555 Q ss_pred HHcCCcceEEeccccccc-hHHHHHHHHHHHhh-cC----hHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCe Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSK-DENLTKQLKEALRI-DN----FDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQ 150 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~-d~~~~~~l~~vl~d-n~----f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~ 150 (518) -+-+=|..+-=...+... .....--+..+|.. -+ -..-.+..+...+-.|.+++.+..+ +|++ .+..++++. T Consensus 73 ~iA~lp~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~ 152 (424) T protein:vir:18 73 LTACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSAN 152 (424) T ss_pred hhccCceEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcc Confidence 554434333111111110 00011112333321 11 1122333445666678887776554 3443 455556655 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +-+...++. .+|+. ..++ ..+. + T Consensus 153 V~v~~~~~~----------------~~y~~--------------------------~~~g-~~~~---------~----- 175 (424) T protein:vir:18 153 MDVKLVGKK----------------VVYRY--------------------------QRDS-EYAD---------F----- 175 (424) T ss_pred eEEEEcCCe----------------EEEEE--------------------------EeCC-eEEE---------e----- Confidence 544322211 11110 0000 0000 0 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHH-HHHHhcc-ceeee--chhhh Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYM-REGEKTK-TKIAA--SERMF 306 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~-~e~~~g~-~ri~v--~~~~l 306 (518) ..+ -+.|++.... +...|+|...-+...+... .+..++. .-|+.|. +.-++ |..++ T Consensus 176 ----~~~----------eIih~r~~~~-----dg~~G~spi~~~~~~i~~~-~a~~~~~~~~f~ng~~p~gil~~~~~~l 235 (424) T protein:vir:18 176 ----SQK----------EIFHLKGFGF-----TGLVGLSPIAFACKSAGVA-VAMEDQQRDFFANGAKSPQILSTGEKVL 235 (424) T ss_pred ----ccc----------cEEEecCcCC-----CCcccccHHHHHHHHHHHH-HHHHHHHHHHHHccCCcceEEEeCCcCC Confidence 000 0234454321 2346999888777777543 3333333 3356543 43333 22222 Q ss_pred ccCCCCCccccccCCCcchhheeeecCCcCC----CCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccC Q lcl|Aclame:pro 307 RKKVNKSTDKEEWSMNVDEDYFMQFKGTLDA----GAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLG 382 (518) Q Consensus 307 ~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~----~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d 382 (518) ... .. +.-.+.+....+.... --+++..++.++....+.++++..+...+.|....|++|..++.. T Consensus 236 ~~e-----~~-----~~~~~~~~~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~ 305 (424) T protein:vir:18 236 TEQ-----QR-----SQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDV 305 (424) T ss_pred CHH-----HH-----HHHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC Confidence 110 00 0000111111111000 011223467777777889999999999999999999999999864 Q ss_pred Ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 383 NRE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTL 461 (518) Q Consensus 383 ~~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~ 461 (518) +++ .+++-++.... ..++.+|..++..+-....... +.......+.+.+++++.+..|.+++++.+ T Consensus 306 ~~~t~~~sn~eq~~~----------~f~~~tl~P~~~~ie~~l~~~L---~~~~~~~~~~~~fd~~~llr~d~~~r~~~~ 372 (424) T protein:vir:18 306 EKSTSWGSGIEQQNL----------GFLQYTLQPYISRWENSIQRWL---IPAKDVGRIHAEHNLDGLLRGDSASRAAFM 372 (424) T ss_pred CCcccccccHHHHHH----------HHHHHHHHHHHHHHHHHHHhhc---CCccccCCeEEEEechhhhccCHHHHHHHH Confidence 332 22222211111 1122233333333322222111 111111235577888888899999999999 Q ss_pred HHHHhCCCCCHHHHHHHHcCCCCH-HHHHHHH-----HHHHHhccccCCCCchhccC Q lcl|Aclame:pro 462 NNMNSALAMSVEEKVKLIHPKWED-EEIQAEV-----KRIYLENAIGEVPDPEAIGG 512 (518) Q Consensus 462 ~~~~~aG~~S~~~~v~~~~~~~~e-eea~eev-----~rI~~E~~~~~~~dp~~~~~ 512 (518) .+++++|+|+.-++.+.+. +.. +..++-+ ..+.. .....+|...|+ T Consensus 373 ~~~~~~G~~T~NE~R~~~g--l~pi~gGD~~~~~~n~~~l~~---~~~~~~p~~~ga 424 (424) T protein:vir:18 373 KAMGEAGLRTINEMRRTDN--LPPLPGGDVAMRQSQYVPITD---LGTNKEPRNNGA 424 (424) T ss_pred HHHHhCCCcCHHHHHHHhC--CCCCCCcCeeeeccCccchHh---hhccCCCccCCC Confidence 9999999999999777653 221 1111100 01110 001112322222 No 201 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=95.80 E-value=0.0014 Score=36.17 Aligned_cols=390 Identities=10% Similarity=-0.030 Sum_probs=159.1 Q ss_pred HHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC-cc---ccceecCchHHHHHHHHHHHHcCCcceEE Q lcl|Aclame:pro 13 GWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP-TV---HDKLMNSGTGNEIVVVAAEYISGKPLSID 88 (518) Q Consensus 13 ~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~---~~~~~~~~l~~~i~~~~A~ll~~e~~~i~ 88 (518) -|+.-.+.....+. . .....+...++|...+. +. ...-+.+.--..+++.+|+-+..=|+.+- T Consensus 1 ~~~~r~~~~~~~~~-----~--------~~~~~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp~~~~ 67 (419) T protein:vir:14 1 MFFSRQLLSNLGQT-----Q--------MSAGGWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLPIELY 67 (419) T ss_pred Cccccccccccccc-----c--------cCcchhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCceEEE Confidence 23322211000000 0 00001111222222211 11 11222222234456666666655454442 Q ss_pred eccccccchHHHHHHHHHHHhh--cC--hHHHHHHH-HHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEEcCcEE Q lcl|Aclame:pro 89 VTGVNGSKDENLTKQLKEALRI--DN--FDSKSVKI-VELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFKNNEPF 161 (518) Q Consensus 89 v~~~~~~~d~~~~~~l~~vl~d--n~--f~~~~~~~-~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~~g~~~ 161 (518) -...+. ..+..+..+..+|.. |. -...|.+. +...+..|.+++.+..+ +|++ .+-.++++.+-+... + T Consensus 68 ~~~~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~-~--- 142 (419) T protein:vir:14 68 ERSGED-RKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRG-S--- 142 (419) T ss_pred EecCCc-cccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEEC-C--- Confidence 211111 111111223333331 11 11123333 45555667777666544 3454 355555555544321 1 Q ss_pred EEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccceee Q lcl|Aclame:pro 162 RFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVS 241 (518) Q Consensus 162 ~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (518) +...+|+ . .....+ ..+ T Consensus 143 -----------~~~~~y~-------------------------~---~~~~~~--------------------~~~---- 159 (419) T protein:vir:14 143 -----------DLKPVYR-------------------------V---RGSDPM--------------------PQR---- 159 (419) T ss_pred -----------CceEEEE-------------------------E---ccCccc--------------------chh---- Confidence 1111111 0 000000 000 Q ss_pred cCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCCCccccccC Q lcl|Aclame:pro 242 IGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNKSTDKEEWS 320 (518) Q Consensus 242 tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~~~~~~~~~ 320 (518) -+.|++.... +..+|+|.+.-+...|.....+-.....-|+.|- ++-++. ...........-. T Consensus 160 ------~i~h~~~~~~-----dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~-----~~~~~~~~~~~~~ 223 (419) T protein:vir:14 160 ------LVHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIE-----RPKDAPALKDQAS 223 (419) T ss_pred ------heeEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEE-----ecCCCCcccCHHH Confidence 0233343221 2346999998888777665555444444556644 443331 1111100000000 Q ss_pred CCcch----hheeeecC-CcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHHH Q lcl|Aclame:pro 321 MNVDE----DYFMQFKG-TLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWSL 394 (518) Q Consensus 321 ~d~d~----~~~~~~~~-~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~ 394 (518) .+.-. +.|.+... ..-.--+++..++.++....+.++++..+...+.|....|++|..++..++. .+..|- . T Consensus 224 ~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~~E~--~ 301 (419) T protein:vir:14 224 VDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEH--Q 301 (419) T ss_pred HHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHH--H Confidence 00000 01111000 0000011223466666666778888888888889999999999999864332 222221 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 395 QDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEE 474 (518) Q Consensus 395 ~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~ 474 (518) . +..++.+|..++..+-...... .+.......+.+.+++++-+..|..++++.+.+++++|+|+.-+ T Consensus 302 ~----------~~f~~~~L~P~~~~ie~~l~~k---ll~~~~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE 368 (419) T protein:vir:14 302 S----------LQFVIYTLLPWVKRHEQAKTRD---LLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSIND 368 (419) T ss_pred H----------HHHHHHHHHHHHHHHHHHHhhh---ccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHH Confidence 1 1123333444444332222211 11111122456777777888889999999999999999999999 Q ss_pred HHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcC-CCCC Q lcl|Aclame:pro 475 KVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGME-TKGG 518 (518) Q Consensus 475 ~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~-~~gG 518 (518) +.+++. +.. +.-++-+.. ........+++.+.+.-+ ..++ T Consensus 369 ~R~~~g--l~p~~gGD~~~~~--~n~~~~~~~~~~~~~~~~~~~~~ 410 (419) T protein:vir:14 369 IRRLEN--MPPVKGGDIYLSP--MNMVDASKPQQLPVGKSEPTKAA 410 (419) T ss_pred HHHHhC--CCCCCCcCeeeec--cccccccccccccCCCCCCcccc Confidence 877652 211 111110100 000000001111111111 2222 No 202 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=95.65 E-value=0.0017 Score=35.80 Aligned_cols=397 Identities=9% Similarity=0.009 Sum_probs=148.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc-ccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV-HDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~l~~~i~~~~A~l 79 (518) |- -.+|...||.+.-++..+...... .++. .|......+. ....+..+--...++.+|+- T Consensus 1 ~~-~~~~~~~~k~~~~~~~~~~~~~~~--------~~~~----------~~~~~~~~~v~~~~a~~~~~v~~~i~~Ia~~ 61 (409) T protein:vir:94 1 MA-KENIVTRIKKKLIDNWIDQSASKL--------YDFS----------PWKNKSFWGVINNTLETNETIFSAITKLSNS 61 (409) T ss_pred Cc-ccccchhhhhHHhhhhhcCCcccc--------cccc----------cccCccccccchhhhhccHHHHHHHHHHHHh Confidence 31 122222333332111100000000 0011 1211111111 11111111112233344444 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHH-HHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEEE Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKS-VKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDFK 156 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~-~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~~ 156 (518) +..=| |.+-......+..+...|..--..+-=...+ ...+...+..|.+++.+..+ .|++ .+-.++|+.+-+... T Consensus 62 ia~lp--~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~ 139 (409) T protein:vir:94 62 MASLP--LKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIE 139 (409) T ss_pred hhhCc--eeEeecccccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEe Confidence 43323 3332222122222222222101111111223 33455566678877766543 3443 445555555544322 Q ss_pred cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcc Q lcl|Aclame:pro 157 NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQL 236 (518) Q Consensus 157 ~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 236 (518) + +...++|.. . ...+..+. + .. T Consensus 140 ~---------------~~~~~~y~~------------------------~-~~~g~~~~------------~------~~ 161 (409) T protein:vir:94 140 N---------------QSRELYYSI------------------------H-AATGNKLI------------V------HN 161 (409) T ss_pred C---------------CCcEEEEEE------------------------E-cCCceEEE------------E------cc Confidence 1 111111111 0 00000000 0 00 Q ss_pred cceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce--eeechhhhccCCCCCc Q lcl|Aclame:pro 237 NHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTK--IAASERMFRKKVNKST 314 (518) Q Consensus 237 ~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~r--i~v~~~~l~~~~~~~~ 314 (518) . -+.|+++.... +..+|+|.+.-+...++....+ .++. -+..+... |.....-+.. T Consensus 162 ~----------dvih~r~~~~~----~~~~G~s~l~~~~~~i~~~~~~-~~~~-~~~~~~~~~~i~~~~~~l~~------ 219 (409) T protein:vir:94 162 M----------DMLHFKHIVAS----NMVQGISPIDVLKNTTDFDNAV-RTFN-LTEMQKPDSFMLKYGSNVGK------ 219 (409) T ss_pred c----------cEEEecCCCCC----CccccccHHHHHHHHHHHHHHH-HHHH-HHhcCCCCeeEEecCCCCCH------ Confidence 0 13444432111 2335888887776666644333 2221 11222221 2111111100 Q ss_pred cccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWS 393 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s 393 (518) .........-.+.+..- +..- --+++..++.++...+..++++..+...+.|....|++|..++..+.. .+..| . T Consensus 220 e~~~~~~~~~~~~~~~~-g~~~-vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e--~ 295 (409) T protein:vir:94 220 EKRQQVLEDFKQYYEEN-GGIL-FQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNE--E 295 (409) T ss_pred HHHHHHHHHHHHHhhcC-CCee-ecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHH--H Confidence 00000000000111100 0000 011223466677777888999999988899999999999999864332 11111 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHH Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVE 473 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~ 473 (518) .... .++.+|..++..+-......... .......+.+.++.++-+..|.+++++.+.+++.+|+|+.- T Consensus 296 ~~~~----------f~~~~l~P~~~~ie~~ln~~Ll~--~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~N 363 (409) T protein:vir:94 296 LNRF----------YLQHTLLPIVKQYEEEFNRKLLT--KTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTIN 363 (409) T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHhhCC--cccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHH Confidence 1111 12223333333332221111110 00011123466666677788999999999999999999999 Q ss_pred HHHHHHcCCCCH-HHHHHHHHHHHHhcccc-C---CCCchhccCcCCCCC Q lcl|Aclame:pro 474 EKVKLIHPKWED-EEIQAEVKRIYLENAIG-E---VPDPEAIGGMETKGG 518 (518) Q Consensus 474 ~~v~~~~~~~~e-eea~eev~rI~~E~~~~-~---~~dp~~~~~~~~~gG 518 (518) ++.+++. +.. +..++-+ +....... . .+.....|+-|.+-| T Consensus 364 E~R~~~g--~~p~~ggD~~~--~~~n~~~~~~~~~~~~~~kGG~~n~~e~ 409 (409) T protein:vir:94 364 DIREWED--LPPVEGGDKPL--ISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred HHHHHhC--CCCCCCcCeEe--ecccccccccchhhcccccCCCCCcCCC Confidence 9876652 222 1111100 00000000 0 000112222233333 No 203 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=95.46 E-value=0.002 Score=35.36 Aligned_cols=390 Identities=11% Similarity=0.051 Sum_probs=152.2 Q ss_pred CCcCchHHHHHHHHhc----CCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLN----GKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVA 76 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~----g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~ 76 (518) |-= .++...+|++.- +.+.. .... ...|.. +.+|+- .....++..--...++.+ T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~~~----~~~~~v-----~~~~~~~~~~V~~ci~~I 58 (409) T protein:vir:93 1 MAK-ENIVTRIKKKLIDNWIDQSTS----KLYD--------FSPWKN----RSFWGV-----INNTLETNETIFSAITKL 58 (409) T ss_pred CCc-cchhhhhhhhhhhhhhccccc----cccc--------cccccC----cccccc-----chhhhhccHHHHHHHHHH Confidence 321 122223333221 11110 0000 011110 111110 001111211122334444 Q ss_pred HHHHcCCcceEEeccccccchHHHHHHHHHHHhhcC---hHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCee Q lcl|Aclame:pro 77 AEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDN---FDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQF 151 (518) Q Consensus 77 A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~---f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~ 151 (518) |+-|..=| |.+-......+..+...|.. +-|. -..-.+..+...+..|.+++.+..+ .|++ .+-.++|+.+ T Consensus 59 a~~ia~lp--~~~~~~~~~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v 134 (409) T protein:vir:93 59 SNSMASLP--LKMYEDYKVVNTEVSDLLTV--SPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVV 134 (409) T ss_pred HHhhhhCc--eeEeeccccccchHHHHHhh--hcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcee Confidence 44444333 33322222222222222211 1121 1222334455566668777766554 3443 4555566655 Q ss_pred EEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 152 WIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 152 ~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) -+...+. ...++|.. .-. .+..+. + T Consensus 135 ~~~~~~~---------------~~~~~y~~------------------------~~~-~g~~~~---------~------ 159 (409) T protein:vir:93 135 EMLIENQ---------------SRELYYSI------------------------HAA-TGNKLI---------V------ 159 (409) T ss_pred EEEEeCC---------------CcEEEEEE------------------------EcC-CceEEE---------E------ Confidence 5542211 01111111 000 000000 0 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCC Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVN 311 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~ 311 (518) ... -+.|+++... .+.-+|+|.+.-+...++-...+-.........+..-|+....-+... T Consensus 160 ---~~~----------eVih~r~~~~----~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e-- 220 (409) T protein:vir:93 160 ---HNM----------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKE-- 220 (409) T ss_pred ---ccc----------cEEEeCCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHH-- Confidence 000 1244443211 122358888877766666444332211111111112222221111100 Q ss_pred CCccccccCCCcchhheeeec---CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-ch Q lcl|Aclame:pro 312 KSTDKEEWSMNVDEDYFMQFK---GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VK 387 (518) Q Consensus 312 ~~~~~~~~~~d~d~~~~~~~~---~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~T 387 (518) .. +.-.+.|.... +.. .--+++..++.++....+.++++..+...+.|....|++|..++..+.. .+ T Consensus 221 ----~~----~~~~~~~~~~~~~~g~~-~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~s 291 (409) T protein:vir:93 221 ----KR----QQVLEDFKQYYEENGGI-LFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFA 291 (409) T ss_pred ----HH----HHHHHHHHHHhhcCCCe-eecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcc Confidence 00 00000111000 000 0011223466666677788999998888889999999999999864432 22 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhC Q lcl|Aclame:pro 388 ATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSA 467 (518) Q Consensus 388 AtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~a 467 (518) ..|- .. ...++.+|..++..+.......... .......+.+.+++++-+..|.+++++.+.+++.+ T Consensus 292 n~e~--~~----------~~f~~~~l~P~~~~ie~~l~~~Ll~--~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~ 357 (409) T protein:vir:93 292 KNEE--LN----------RFYLQHTLLPIVKQYEEEFNRKLLT--KTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRS 357 (409) T ss_pred cHHH--HH----------HHHHHHHHHHHHHHHHHHHHhhcCC--cccccCcceEEeechhhhccCHHHHHHHHHHHHhC Confidence 2121 11 1122233444443332222211110 00111123466666676778999999999999999 Q ss_pred CCCCHHHHHHHHcCCCCH-HHHHHHH-----HHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 468 LAMSVEEKVKLIHPKWED-EEIQAEV-----KRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 468 G~~S~~~~v~~~~~~~~e-eea~eev-----~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) |+|+.-++.+++. +.. +..++=+ ..|.. ..........|+-|.+-| T Consensus 358 G~~T~NE~R~~~g--~~p~~ggD~~~~~~n~~~~~~---~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:93 358 GYYTINDIREWED--LPPVEGGDKPLISGDLYPIDT---PLELRKSLKGGDKNVNES 409 (409) T ss_pred CCcCHHHHHHHhC--CCCCCCcCeeeeccccccccc---chhhcccccCCCCCcCCC Confidence 9999999887763 222 1111100 00000 000001112233333334 No 204 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=95.39 E-value=0.0022 Score=35.20 Aligned_cols=391 Identities=9% Similarity=0.046 Sum_probs=153.1 Q ss_pred CCcCchHHHHH-HHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFI-KGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~-~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) +.|.+-++..+ ..|...... .. . ++..|... .+|+- .....+..+--...++.+|+- T Consensus 4 ~~~~~~~k~~~~~~~~~~~~~-~~----~--------~~~~~~~~----~~~~v-----~~~~a~~~~~V~~ci~~ia~~ 61 (409) T protein:vir:96 4 ENIVTRIKKKLIDNWIDQSAS-KL----Y--------DFSPWKNK----SFWGV-----INNTLETNETIFSAITKLSNS 61 (409) T ss_pred ccchhhhhhHHhhhhhccccc-cc----c--------ccccccCc----ccccc-----chhhHhhhHHHHHHHHHHHHh Confidence 55555555542 444432211 00 0 01111111 11110 011111111112223344444 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhcC---hHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEE Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDN---FDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWID 154 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~---f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~ 154 (518) |..=| |.+-......+..+...|.. +-|. -..-.+..+...+..|.+++.+..+ .|++ .+-.++|+.+-+. T Consensus 62 ia~lp--~~~~~~~~~~~~~l~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~ 137 (409) T protein:vir:96 62 MASLP--LKMYEDYKVVNTEVSDLLTV--SPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEML 137 (409) T ss_pred hhhCc--eEEeecccccchhHHHHHhh--hcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEE Confidence 43323 33322222222222222221 1121 1222234455666678887766544 3432 3444445444433 Q ss_pred EEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccC Q lcl|Aclame:pro 155 FKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) Q Consensus 155 ~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (518) ..+ +...+|+ .++..+ +..+. + T Consensus 138 ~~~---------------~~~~~~y------------------------~~~~~~-g~~~~---------~--------- 159 (409) T protein:vir:96 138 IEN---------------QSRELYY------------------------SIHAAT-GNKLI---------V--------- 159 (409) T ss_pred EeC---------------CCcEEEE------------------------EEEcCC-ceEEE---------E--------- Confidence 211 1011111 111100 00000 0 Q ss_pred cccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCc Q lcl|Aclame:pro 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKST 314 (518) Q Consensus 235 ~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~ 314 (518) .+. -+.|++...+ .+.-.|+|.+.-+...++-..............+..-|+.+...+... T Consensus 160 ~~~----------evih~r~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e----- 220 (409) T protein:vir:96 160 HNM----------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTE----- 220 (409) T ss_pred ccc----------cEEEeCCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCCCCHH----- Confidence 000 0233443211 122358888877776666443332222111111111122222111100 Q ss_pred cccccCCCcchhheeeecCCc--CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c-hHHH Q lcl|Aclame:pro 315 DKEEWSMNVDEDYFMQFKGTL--DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V-KATE 390 (518) Q Consensus 315 ~~~~~~~d~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~-TAtE 390 (518) . .+.-.+.|....... -.--+++..++.++....+.++.+..+...+.|....|++|..++..+.. . ++.+ T Consensus 221 ~-----~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~ 295 (409) T protein:vir:96 221 K-----RQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE 295 (409) T ss_pred H-----HHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHH Confidence 0 000001111100000 00011233467777778888999999988899999999999999864332 1 2221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 391 IWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAM 470 (518) Q Consensus 391 i~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~ 470 (518) . . ...++.+|..++..+-......... .......+.+.++.++-+-.|.+++++.+.+++.+|+| T Consensus 296 ~---~----------~~f~~~~l~P~~~~ie~~l~~~Ll~--~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~ 360 (409) T protein:vir:96 296 L---N----------RFYLQHTLLPIVKQYEEEFNRKLLT--KTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYY 360 (409) T ss_pred H---H----------HHHHHHHHHHHHHHHHHHHHhhcCC--cccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCC Confidence 1 1 1122233333333332222111110 00011123466666677788999999999999999999 Q ss_pred CHHHHHHHHcCCCCH-HHHHHHHHHHHHhccc----cCCCCchhccCcCCCCC Q lcl|Aclame:pro 471 SVEEKVKLIHPKWED-EEIQAEVKRIYLENAI----GEVPDPEAIGGMETKGG 518 (518) Q Consensus 471 S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~----~~~~dp~~~~~~~~~gG 518 (518) +.-++.+++. +.. +..++-+. ...... .........|+-|.+.| T Consensus 361 T~NE~R~~~g--~~pi~ggD~~~~--~~n~~~~~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:96 361 TINDIREWED--LPPVEGGDKPLI--SGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred CHHHHHHHhC--CCCCCCcceeee--cccccccccchhhcccccCCCCCcCCC Confidence 9999877663 221 11111010 000000 00001112222333333 No 205 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=95.33 E-value=0.0023 Score=35.07 Aligned_cols=375 Identities=14% Similarity=0.084 Sum_probs=144.6 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceec-CchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMN-SGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~l~~~i~~~~A~l 79 (518) ||+++...+.. +..|.. .+.. +..... +......+ ...++ .+--...++.+|+- T Consensus 1 Mg~~~~f~~k~----~~~~~~----~~~~-----------~~~~~~----~~~~~~~~--~~~~~~~~~V~~~I~~ia~~ 55 (403) T protein:vir:80 1 MGLFNFFRRKT----RSEPTN----AISW-----------FLTQEA----YDTLAIPG--YTRLSDNPEVRMAVHKIAEL 55 (403) T ss_pred Ccccccccccc----cccccc----hhhh-----------hccccc----ccccccch--hhhhhhhHHHHHHHHHHHHh Confidence 99986433311 111110 0000 000000 00000000 01111 01111234555555 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHh--hcCh--HHHHHHH-HHHHHhh--CCEEEEEEEEC-CeE-EEEEEcCCe Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALR--IDNF--DSKSVKI-VELAGGS--GVSAVKINILN-GRP-SISVHSSSQ 150 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn~f--~~~~~~~-~e~~~a~--G~~~~k~~~d~-~~i-~i~~v~ad~ 150 (518) |.+=|+.+--...++ . ......+..+|. =|.+ ...|.+. +..++-. |-+++.+..++ |++ .+..++|+. T Consensus 56 iA~~p~~~~~~~~~g-~-~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~ 133 (403) T protein:vir:80 56 ISSMTIHLMQNTDNG-D-IRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSK 133 (403) T ss_pred hhhCceEEEEecCCc-e-eecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCe Confidence 544444432111111 1 111112233332 1111 1123333 3344443 44555555543 333 344444444 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +-+...+ +.|.|+|. .. .. T Consensus 134 v~~~~~~---------------------------------------~g~~~~y~---~~---~~---------------- 152 (403) T protein:vir:80 134 VSFVDTD---------------------------------------TGYQIWYQ---GK---AY---------------- 152 (403) T ss_pred eEEEEcC---------------------------------------CceEEEEe---ec---cc---------------- Confidence 4332111 01122211 00 00 Q ss_pred cccCcccceeecCCCcceEEEec-CcccCccccCCC-CCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeee--chhh Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLIN-NSPSNTRYPHLN-LGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAA--SERM 305 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~-n~~~N~~~~~sP-lG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v--~~~~ 305 (518) .++. +.|++ +..+ .++ .|.|...-+...+.....+-.....-|+.|. +..++ +..+ T Consensus 153 ----~~~e----------iih~~~~~~~-----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~ 213 (403) T protein:vir:80 153 ----NYDE----------VLHFIVNPDP-----EKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAAT 213 (403) T ss_pred ----chhh----------EEEEeccCCC-----cCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC Confidence 0000 11222 2211 122 3888777666666655533332233345443 33332 2221 Q ss_pred hccCCCCCccccccCCCcchhheeeecCCcCCCC-----CCCccceEecc-cccHHHHHHHHHHHHHHHHHHhCCCcccc Q lcl|Aclame:pro 306 FRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGA-----KLNDMIQFMQG-DFRDGSYRETMEYFAQKAVSKSGYNPATF 379 (518) Q Consensus 306 l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~-----~~~~~i~~~~~-~ir~~~~~~~i~~~l~~i~~~~G~s~~tf 379 (518) -+.. ... .....+....+....+. .+....+.++| +....++++..+...+.|....|++|..+ T Consensus 214 ~~~~----~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l 283 (403) T protein:vir:80 214 AELS----SEE------GRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLL 283 (403) T ss_pred ChHH----HHH------HHHHHHHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHc Confidence 1000 000 00001111101000000 11112333443 56677888888888889999999999999 Q ss_pred ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 380 NLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 380 ~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) |..... .++. . +.++.+|..++..+-....... + ...++.+.++.+.-+..|.+++++ T Consensus 284 g~~~~~-~~~~---------~------~f~~~~l~P~~~~ie~~l~~kl---l---~~~~~~~~f~~~~ll~~d~~~~~~ 341 (403) T protein:vir:80 284 GVGKYD-KDEY---------N------NFINSTILPIAKGIEQELTRKL---L---ISPDLYFKFNPRSLYAYDLKELAE 341 (403) T ss_pred CCCCcc-HHHH---------H------HHHHHHHHHHHHHHHHHHHHhc---c---CCCCcEEEeechhhhccCHHHHHH Confidence 753221 1111 1 1233344444444433222111 1 122345666666777889999999 Q ss_pred HHHHHHhCCCCCHHHHHHHHcCCCCH-HHHHHHHHH---HHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 460 TLNNMNSALAMSVEEKVKLIHPKWED-EEIQAEVKR---IYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ~~~~~~~aG~~S~~~~v~~~~~~~~e-eea~eev~r---I~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+.+++.+|+|+.-++.+.+. +.. +..++-+.. +..+.. .. ++..-.|+-++.+| T Consensus 342 ~~~~~~~~Gi~t~NE~R~~~g--l~p~~ggd~~~~~~n~~pl~~~-~~-~~~~k~ge~~~~~~ 400 (403) T protein:vir:80 342 VGSNMYVRGLMEGNEVRDWLG--LSPKEGLSELVILENYIPLDKI-GD-QNKLKGGEKGGADG 400 (403) T ss_pred HHHHHHhCCCcCHHHHHHHhC--CCCCCCCCeEeecccccchhhc-cc-hhhccCCCCCCCCC Confidence 999999999999999877653 222 111111100 000000 00 01111222233334 No 206 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=95.22 E-value=0.00026 Score=40.20 Aligned_cols=186 Identities=14% Similarity=0.110 Sum_probs=80.5 Q ss_pred CCCcchhhhhHHH-HHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCc Q lcl|Aclame:pro 265 NLGESDLSQCTNY-LFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLND 343 (518) Q Consensus 265 PlG~S~~~~~~~~-i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~ 343 (518) -+.+..++.+.+- -.++.+++..+ ...+ .... ....+. ..+ T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~----~~~~-------------~~~~----~~~ld~-----------------~~e 42 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQV----DNNS-------------GVGQ----AIGIDA-----------------DSE 42 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHH----HHhh-------------hhhh----hheeec-----------------CCc Confidence 1122222222210 01111111111 0000 0000 000111 112 Q ss_pred cceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 344 MIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREVKATEIWSLQDATVRKIEKKK-RLIQNVYEQMLWDFL 421 (518) Q Consensus 344 ~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~TAtEi~s~~~~t~~t~~~~~-~~~~~~l~~li~~il 421 (518) .++.++.++- -.-.-+..+...+...+|++.-.| |-+.++..||. ....+-.|.++..+| ..++..|+.++..+. T Consensus 43 ~~e~~~~~ls--Gl~d~l~~~~~~iaa~s~iP~t~LfG~sp~Glnatg-e~d~~nyyd~i~~~Qe~~l~p~le~l~~~~~ 119 (201) T protein:vir:10 43 EYNVLNSDIG--GIDTFLSQKFDRIVALSGIHEIILKGKNVGGVSASQ-NTALETFYGYVDRKRKAELLPLLEFLLPFIV 119 (201) T ss_pred ceeeeecCcC--ChHHHHHHHHHHHHhHhcCchhhhcCCCCccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 2333333322 233455667777777888875444 55555554432 112233566666666 445566665543210 Q ss_pred HHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH-------HHHHHHhCCCCCHHHHHHHH-----cCCCCHHHHH Q lcl|Aclame:pro 422 YLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS-------TLNNMNSALAMSVEEKVKLI-----HPKWEDEEIQ 489 (518) Q Consensus 422 ~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~-------~~~~~~~aG~~S~~~~v~~~-----~~~~~eeea~ 489 (518) . +.+++|.|+.-...+..++|+ ++++++++|++|..++..++ ++...+..++ T Consensus 120 --------------~--~~~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~ 183 (201) T protein:vir:10 120 --------------T--EQEWSVEFNPLSQVSDKDKSEILEKNVNSVAALIAAGIIDADEARDTLRAISTEVKIGEGSIQ 183 (201) T ss_pred --------------C--CCCceEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCcCCCCCCCCC Confidence 1 136899999999998876654 45666777888877776654 1222222222 Q ss_pred HHHHHHHHhccccCCCCchhccCcC Q lcl|Aclame:pro 490 AEVKRIYLENAIGEVPDPEAIGGME 514 (518) Q Consensus 490 eev~rI~~E~~~~~~~dp~~~~~~~ 514 (518) +++.. ++..+|....+-| T Consensus 184 ~~~~~-------~e~~dp~~~~~~~ 201 (201) T protein:vir:10 184 TEVVI-------NESEDPLDVSANN 201 (201) T ss_pred ccccc-------cccCCCCCCCCCC Confidence 22211 1111222222212 No 207 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=95.22 E-value=0.0025 Score=34.84 Aligned_cols=397 Identities=11% Similarity=0.046 Sum_probs=156.9 Q ss_pred HHh-cCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccc-e--------ecCchHHHHHHHHHHHHcC Q lcl|Aclame:pro 13 GWL-NGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDK-L--------MNSGTGNEIVVVAAEYISG 82 (518) Q Consensus 13 ~w~-~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~--------~~~~l~~~i~~~~A~ll~~ 82 (518) --+ .|+.- ...+...+ .+ |-. ..|.+.+.. +.+.. . +..+--..+++.+|+-+-+ T Consensus 1 ~~~~~~~~~-~~p~~~~~-~~--------~~~----~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~ 65 (518) T protein:vir:78 1 MLLANGQTL-SAPAMAEL-SP--------QMQ----DSYYYAPAV-GMQLERQFSLYGGIYKNQPWVRTVIAKRAQALAR 65 (518) T ss_pred CcccCceee-ccchhhhh-hh--------hhh----hccccccee-ceecccccchhhHHhhhhHHHHHHHHHHHHhhcc Confidence 011 11100 00000000 00 000 011111110 11100 0 0111113355666665554 Q ss_pred CcceEEeccccccchHHHHHHHHHHHhhcChHH---HHHH-HHHHHHhhCCEEEEEEEEC-CeE-EEEEEcCCeeEEEEE Q lcl|Aclame:pro 83 KPLSIDVTGVNGSKDENLTKQLKEALRIDNFDS---KSVK-IVELAGGSGVSAVKINILN-GRP-SISVHSSSQFWIDFK 156 (518) Q Consensus 83 e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~---~~~~-~~e~~~a~G~~~~k~~~d~-~~i-~i~~v~ad~~~P~~~ 156 (518) =|..+--...+... +.....+..++..-+-+. .|.+ .+...+..|.+++.+..+. |++ .+-.++++.+-+... T Consensus 66 lp~~l~~~~~~~~~-~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~ 144 (518) T protein:vir:78 66 LPVKCMFTSGDTET-EEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRN 144 (518) T ss_pred CceEEEEEcCCccc-cccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEc Confidence 44444222111111 111112233333322111 2333 3444555688777765543 443 455666665555422 Q ss_pred cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcc Q lcl|Aclame:pro 157 NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQL 236 (518) Q Consensus 157 ~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 236 (518) . +...+++. |....+..... ..+ .. T Consensus 145 ~---------------~~~~~~y~-------------------------~~~~~~~~~~~------~~~---------~~ 169 (518) T protein:vir:78 145 S---------------RTGRYEYY-------------------------FQAGAGVGTQL------VSF---------AD 169 (518) T ss_pred C---------------CCCEEEEE-------------------------EEecCCcccee------EEe---------cC Confidence 1 00001110 00000000000 000 00 Q ss_pred cceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhccCCCCCcc Q lcl|Aclame:pro 237 NHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRKKVNKSTD 315 (518) Q Consensus 237 ~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~~~~~~~~ 315 (518) . =+.|++....+. ...|+|.+.-+...|.....+-....+-|+.|.. .-++ .....-... T Consensus 170 ~----------eIiHir~~~~dg----~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl-----~~~~~ls~e 230 (518) T protein:vir:78 170 D----------EVVPIRFFNPDG----LERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVL-----RHEKRLSPE 230 (518) T ss_pred C----------cEEEecCCCCCc----ccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEE-----ecCCCCCHH Confidence 0 023444432222 2259998887777766665554444455666543 2222 111100000 Q ss_pred ccccCCCcchhheeeecCC-cCCC----CCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHH Q lcl|Aclame:pro 316 KEEWSMNVDEDYFMQFKGT-LDAG----AKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATE 390 (518) Q Consensus 316 ~~~~~~d~d~~~~~~~~~~-~~~~----~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtE 390 (518) . ...-.+.|...... ...+ -+++..++.++.+..+.++++..+...+.|....|++|..+++.++. |.+- T Consensus 231 ~----~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~s-t~sn 305 (518) T protein:vir:78 231 A----QQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRA-TFSN 305 (518) T ss_pred H----HHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCC-Cchh Confidence 0 00001111111110 0000 01223466677777888999999999999999999999999875433 1111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 391 IWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAM 470 (518) Q Consensus 391 i~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~ 470 (518) +..... ..++.+|.-++..+-......... .....+.+.++.+.-+..|.+++++.+.+++.+|+| T Consensus 306 ~e~~~~----------~f~~~tL~P~~~~ie~eln~~L~~----~~~~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~l 371 (518) T protein:vir:78 306 ISAQMR----------AFYRDTMAIPIARIQSAMDKYVGQ----YWVRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVA 371 (518) T ss_pred HHHHHH----------HHHHHHHHHHHHHHHHHHHHhhcc----cccCcceEEeechhhhccCHHHHHHHHHHHHhCCCc Confidence 111111 112223333333322222111111 011134567777788899999999999999999999 Q ss_pred CHHHHHHHHcCC-CCHHHHHHHH-----HHHHH-------hccccCCCCchh----ccCcCCCCC Q lcl|Aclame:pro 471 SVEEKVKLIHPK-WEDEEIQAEV-----KRIYL-------ENAIGEVPDPEA----IGGMETKGG 518 (518) Q Consensus 471 S~~~~v~~~~~~-~~eeea~eev-----~rI~~-------E~~~~~~~dp~~----~~~~~~~gG 518 (518) +.-++.+++... .++...++-. ..+.. .+....+++|.. .++....++ T Consensus 372 T~NE~R~~~gl~pie~~~gD~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 436 (518) T protein:vir:78 372 TPNEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPAS 436 (518) T ss_pred CHHHHHHHhCCCCCCCCCCceeeecccceecccccccccCCCCCCCCCCCCcccccccccCcccc Confidence 999987766321 2222222111 11100 000011111111 111111111 No 208 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=95.19 E-value=0.0026 Score=34.79 Aligned_cols=426 Identities=8% Similarity=-0.021 Sum_probs=160.1 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |+...+--+.+ .||.|.- --=+.++..+. ..+ .-|++|-=+++..+++|-..+ T Consensus 92 ~~~~~~~~~~l-~~~~~~~-----F~Gy~~la~la-Q~~--------------------eyr~~~~~ia~e~~R~w~~~~ 144 (698) T protein:vir:10 92 LDFNGTSMDAL-SFVTSSG-----FPGFPTLVLLA-QLP--------------------EYRAMHEVLADECIRTWGEAI 144 (698) T ss_pred hcccccccccc-hhhhccC-----cchHHHHHHHh-hcc--------------------chhhHHHHHHHHhhcccceec Confidence 32211111112 3554321 00001111110 001 112222224555555553333 Q ss_pred cCCcce-----EEeccccccc-hHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCee-EE Q lcl|Aclame:pro 81 SGKPLS-----IDVTGVNGSK-DENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQF-WI 153 (518) Q Consensus 81 ~~e~~~-----i~v~~~~~~~-d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~-~P 153 (518) -++.-. +++.+..... +...-+.|+.-++.-++..+++++++.+-..||.++-..++++... .+.. +| T Consensus 145 ~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aRlfGGa~~~i~I~gdd~~-----l~~PL~~ 219 (698) T protein:vir:10 145 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQI-----MDTPLVP 219 (698) T ss_pred cccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceEEEEEeecCccc-----ccccccc Confidence 222211 2232222222 1122345666666667889999999999999999855544331100 0011 11 Q ss_pred --EE-EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 154 --DF-KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 154 --~~-~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) .. .-|...+++ .++.+. ++-..|...+ +... ..+.+...... T Consensus 220 ~~~~I~kGslKGL~---------------ViDp~~---------------vtP~~~n~~d----P~sp-dfgkP~~y~V~ 264 (698) T protein:vir:10 220 RPYTVPKGSFQGLR---------------VVEPYW---------------VTPNNYNSIN----PVAD-DFYKPSTWWMI 264 (698) T ss_pred ccccccCccceeee---------------eecccc---------------cccchhhhcc----chhh-ccCCCceEEEe Confidence 00 011122221 111110 0000111000 0000 00000000000 Q ss_pred cccCccccee-ecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHSV-SIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~~-~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~ 309 (518) ...+.....+ ..+.+.|. . +++ ..+. .|+|....+.+-+++.+.+-.....=+..-....+ -.++..-. T Consensus 265 G~~IH~SRL~~~vg~pvpd-~-LKp--~y~f-----~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~~~~l-~~dla~aL 334 (698) T protein:vir:10 265 GSEVHATRLHTIVSRPVGD-M-LKP--TYSF-----AGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGI-LMDLAQAL 334 (698) T ss_pred cceecceeEEEecCCCchh-h-hcc--hhcc-----CCccHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH-HHHHHHhc Confidence 0011111111 11111111 1 111 1111 39999999999999998876665544322222221 12232222 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcccc-ccCCccchH Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATF-NLGNREVKA 388 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf-~~d~~~~TA 388 (518) .++.......-. .--+.|+...+..-. +++.+.++.++ ....-.-.-+..++..+.-.++++.--| |.+..+..| T Consensus 335 ~~g~~~~l~~R~-eli~~~Rsn~G~~ll-Dk~~Eefeq~s--t~lSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNA 410 (698) T protein:vir:10 335 TPGANVDLSMRA-ELINRYRDNRNILFL-DKATEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNA 410 (698) T ss_pred CChhhHHHHHHH-HHHHHhcCccceEEE-ecCCcceEEEe--cCcCCHHHHHHHHHHHHHhhhcCchhhhhccCCcccCc Confidence 222110000000 001123333322211 12334454444 3334445555566666777777775444 555555433 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHH------ Q lcl|Aclame:pro 389 TEIWSLQDATVRKIEKKK-RLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTL------ 461 (518) Q Consensus 389 tEi~s~~~~t~~t~~~~~-~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~------ 461 (518) |- .++..-.|-.+..+| ..++..|+.++..+..- .++... -++++.|+.--..++.++|+.. T Consensus 411 TG-E~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS-------~~G~id---p~i~~~fnPL~qmtd~EkAeI~~k~A~~ 479 (698) T protein:vir:10 411 SS-EGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLS-------LFGAVD---PSIKWQWNALRELDDLEVAEARYKQAQS 479 (698) T ss_pred cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCC---CcceEEeCCCCCcCHHHHHHHHhhhhHH Confidence 31 112222455555554 34555555554443221 123222 2689999988888877776654 Q ss_pred -HHHHhCCCCCHHHHHHHHcCC----CCH-------------HHHHHHHHHHHHhccccCCCCchh-ccCcCCCCC Q lcl|Aclame:pro 462 -NNMNSALAMSVEEKVKLIHPK----WED-------------EEIQAEVKRIYLENAIGEVPDPEA-IGGMETKGG 518 (518) Q Consensus 462 -~~~~~aG~~S~~~~v~~~~~~----~~e-------------eea~eev~rI~~E~~~~~~~dp~~-~~~~~~~gG 518 (518) +.....|+++..+.-+++.-+ +.. ..++.++...+.-.......+|.. .|.-.+.+- T Consensus 480 d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (698) T protein:vir:10 480 DVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGVLTYVQRMAEGGDTGAPTAPGGARAGATA 555 (698) T ss_pred HHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHHHhhhcCCcCCCCcccccccccccCCCCC Confidence 344466888877766666321 111 111111111100000000000000 000000000 No 209 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=94.95 E-value=0.0031 Score=34.33 Aligned_cols=372 Identities=7% Similarity=-0.040 Sum_probs=143.3 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhh---hccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSL---WAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) ||+++-+. .+.+.. . .+.. .+.... ...+ |.....- ..+..++..--..+++.+| T Consensus 1 Mglf~~~~-------~~~~~~---~---~~~~-------~~~~~~-~~~~~~~~~~~~~v-~~~~al~~~~V~~~i~~Ia 58 (384) T protein:vir:49 1 MPIFNITN-------LATESP---P---SNQD-------SFFDIT-DPEFLDALNGSEWV-SAETALKNSDLFSIISQLS 58 (384) T ss_pred Cccccccc-------cCcccc---c---ccch-------hhcccc-chhhcccccCCcee-chhhhhccHHHHHHHHHHH Confidence 88875321 111100 0 0000 000000 0011 1111000 0111122222233456666 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC-CeE-EEEEEcCCeeEEEE Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN-GRP-SISVHSSSQFWIDF 155 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i-~i~~v~ad~~~P~~ 155 (518) +-+.+=| |.+.... ...+.+.-+. .-....-.+..+...+..|.+++.+..+. |++ .+..++|+.+-+.. T Consensus 59 ~~ia~l~--~~~~~~~---~~~l~~~PN~---~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~ 130 (384) T protein:vir:49 59 NDLATAK--ITTSRKQ---LQGIVDNPSN---NANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNR 130 (384) T ss_pred HHHhhCc--eeeecch---hhhhhhccCC---CCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 6655434 3332111 1111111111 11123333345556677788888776653 443 45556666665532 Q ss_pred EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 156 KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 156 ~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) .+ +...++|... .++...... ..+ . T Consensus 131 ~~---------------~~~~~~y~~~-------------------------~~~~~~~~~------~~~---------~ 155 (384) T protein:vir:49 131 LD---------------NQNGLYYNIT-------------------------FDDPRIPPK------QHV---------P 155 (384) T ss_pred cC---------------CCceEEEEEE-------------------------ecCccccce------eEe---------c Confidence 11 1111111100 000000000 000 0 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeee--chhhhccCCCC Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAA--SERMFRKKVNK 312 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v--~~~~l~~~~~~ 312 (518) .+ -+.|++....+ +...|+|.+..+...+.....+-.....-|+.|. +.-++ |..+... T Consensus 156 ~~----------eVih~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~---- 217 (384) T protein:vir:49 156 QG----------DILHFRLLSVD----GGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLD---- 217 (384) T ss_pred Cc----------cEEEecCCCCC----CceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChH---- Confidence 00 13445543222 2346999998888888766555554555566544 33332 1111100 Q ss_pred CccccccCCCcchhheeee-cCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHH Q lcl|Aclame:pro 313 STDKEEWSMNVDEDYFMQF-KGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATE 390 (518) Q Consensus 313 ~~~~~~~~~d~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtE 390 (518) .... .....+... +..--.--+.+..++.++.+..+.++++..+...+.|....|++|..++..+.. -|++. T Consensus 218 --~~~~----~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~ 291 (384) T protein:vir:49 218 --FKTK----QSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEM 291 (384) T ss_pred --HHHH----HHHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHH Confidence 0000 000000000 000000011123466677777888999999999999999999999999875332 24433 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 391 IWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAM 470 (518) Q Consensus 391 i~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~ 470 (518) +.... ...+......|...|.+.+..-+ .++.....-.+..........+..++++ T Consensus 292 ~~~~~---~~~i~~~l~pi~~~i~~~l~~~l---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (384) T protein:vir:49 292 IYNIY---FKAVSRFLRPFVSELSKKLSCEV---------------------DADILPAVDPTGSNYIGLINSMVKTGTL 347 (384) T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHhchhh---------------------hhhhhhhhhccchHHHHHHHHHhhcCcc Confidence 32211 11222222222222222211100 0011111112222233334456677888 Q ss_pred CHHHHHHHH--cCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 471 SVEEKVKLI--HPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 471 S~~~~v~~~--~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) ++.++.+.+ .|-.+ .|+.+. . + .+ |...|.-|.+= T Consensus 348 t~~e~~~~l~~~g~~~-ne~r~~----~--~---~~--p~~gGd~~~~~ 384 (384) T protein:vir:49 348 AQNQGLYVLQQAEILP-KDLPEG----E--T---DS--TLKGGETNEQY 384 (384) T ss_pred cHHHHHHHHhhCCCCC-hhHHHH----c--C---CC--CCCCCCCCCCC Confidence 888876654 23233 333221 1 1 11 11111111111 No 210 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=94.73 E-value=0.0037 Score=33.95 Aligned_cols=394 Identities=9% Similarity=-0.012 Sum_probs=157.2 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCcc---ccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~l~~~i~~~~A 77 (518) |++- -|.++..-. . ..-..|.... .-+++.+...+. ....+...---.+++.+| T Consensus 1 m~~~--------~~~~~~~~~-----------~--s~~~~w~~~~--~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia 57 (421) T protein:vir:10 1 MFIP--------QMFEGKKRS-----------V--SGGGFWEAML--GGVRSSHSKAGVMITPETALALSAVRACVTLLA 57 (421) T ss_pred CCCc--------chhcccccc-----------c--CcchhhHHHh--hhhccCcccCCceechHHhhccHHHHHHHHHHH Confidence 5433 344433210 0 0001111100 000011111111 111122211223445555 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHh--hc---ChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCe Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALR--ID---NFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQ 150 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~--dn---~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~ 150 (518) +-+..=|..+--...+.......+-.+..+|. -| ....-.+..+...+-.|.+++.+..+ +|++ .+-.++|+. T Consensus 58 ~~iA~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~ 137 (421) T protein:vir:10 58 ESVAQLPVELYRRDKNGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKK 137 (421) T ss_pred HhhccCceEEEEEcCCCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCce Confidence 55544343331111111110111111223332 11 12222233344566668777666544 3444 344555555 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +-+... +.+.+|+. .+ ..+..+ + T Consensus 138 v~v~~~----------------~~g~~~y~------------------------~~--~~g~~~-----~---------- 160 (421) T protein:vir:10 138 VIVLKG----------------PDGMPYYE------------------------IP--EIGETL-----P---------- 160 (421) T ss_pred EEEEEC----------------CCceEEEE------------------------Ec--CCCcEE-----c---------- Confidence 554321 11111111 00 000000 0 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~ 309 (518) .+ -+.|++....| ...|+|...-+...++.....-.....-|+.|. +.-++ ... T Consensus 161 -----~~----------eiih~~~~~~d-----~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil-----~~~ 215 (421) T protein:vir:10 161 -----MR----------MMHHVKVFSLD-----GYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVI-----ERP 215 (421) T ss_pred -----hh----------hEEEecCcCCC-----CcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEE-----Eec Confidence 00 12334433222 345999988888777654443333344456644 33332 111 Q ss_pred CCCCcc--ccc--cCCCcchhheeeecCCc-CCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc Q lcl|Aclame:pro 310 VNKSTD--KEE--WSMNVDEDYFMQFKGTL-DAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR 384 (518) Q Consensus 310 ~~~~~~--~~~--~~~d~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~ 384 (518) .+..+. ... .....-.+.|.+..... -.--+++-.++.++......++++..+...+.|....|++|..++..+. T Consensus 216 ~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~ 295 (421) T protein:vir:10 216 KEAPAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLAK 295 (421) T ss_pred CccCccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCcC Confidence 110000 000 00000001121110000 0001223457778888889999999999999999999999999987543 Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 385 EV-KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNN 463 (518) Q Consensus 385 ~~-TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~ 463 (518) .. +..| ... ...++.+|..++..+-........ .......+.+.++.+..+..|..++++.+.+ T Consensus 296 ~t~sn~e--~~~----------~~f~~~tl~P~~~~ie~~ln~kL~---~~~~~~~~~v~fd~~~l~~~d~~~~~~~~~~ 360 (421) T protein:vir:10 296 ATNNNIE--HQG----------LQFVMYTLLAWLKRHEGALQRDLL---LPSERRDLYIEFNVSGLLRGDQKSRYESYAL 360 (421) T ss_pred CccccHH--HHH----------HHHHHHHHHHHHHHHHHHHhhhcc---CccccCCeEEEEechhhhccCHHHHHHHHHH Confidence 31 1111 111 112233333333333222221111 1111123456777777788899999999999 Q ss_pred HHhCCCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 464 MNSALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 464 ~~~aG~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++.+|+|+.-++.+++. +.. +..++-+ +...........|.....-..+++ T Consensus 361 ~~~~G~~T~NE~R~~~g--l~p~~ggD~~~--~~~n~~~~~~~~~~~~~~~~~~~~ 412 (421) T protein:vir:10 361 GRQWGWLSVNDIRRMEN--LPPIAGGDKYL--TPLNMVDSAQIIPGDKKPTAQQMA 412 (421) T ss_pred HHhCCCcCHHHHHHHhC--CCCCCCcceee--eccccccccccccCCCCcccccCc Confidence 99999999999887763 211 1111111 000000000000000000011111 No 211 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=94.61 E-value=0.004 Score=33.75 Aligned_cols=430 Identities=9% Similarity=0.029 Sum_probs=163.4 Q ss_pred CCcCchHHHHHHHHhcCCCChh-------hHHhhHHHHhhccchhhhhhhhhhh--h------hhhccCCCCccc----- Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGS-------EPELIPKYLPLVPDNQKEWSKDSYL--T------SLWAQGYVPTVH----- 60 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~-------e~~~~~~~~~~~~~~~~~~~~~~~~--~------~~w~~~~~~~~~----- 60 (518) |.|--+|.+..- +.-.-..+ |-+++.+- ..++ +...+..+. . .+|...+.+... T Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 74 (535) T protein:vir:10 1 MAILKDLRNAFS--LSNKKSTSYIELGDYDKDIVNKA--IRPG--RASARDTVDGIDIADGNVAGQYSVASISDVLSTKK 74 (535) T ss_pred ChhhHHHHHHHH--hhhhhhhhhHHHhhhhHHHHHhh--hhhh--hhhhhccccccccccCCcccccccCccccccCHHH Confidence 777666665541 11000000 11111111 0010 000000000 0 011111111100 Q ss_pred --cceecCchHHHHHHHHHHHHcC-----------CcceEEeccccc-cc--hHHHHHHHHHHHhh--cC------hHH- Q lcl|Aclame:pro 61 --DKLMNSGTGNEIVVVAAEYISG-----------KPLSIDVTGVNG-SK--DENLTKQLKEALRI--DN------FDS- 115 (518) Q Consensus 61 --~~~~~~~l~~~i~~~~A~ll~~-----------e~~~i~v~~~~~-~~--d~~~~~~l~~vl~d--n~------f~~- 115 (518) +.....++...+.+..|+.+.. -...|.+-..+. .. .......+..+|.. |. |+. T Consensus 75 l~~~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~ 154 (535) T protein:vir:10 75 LLKAYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPR 154 (535) T ss_pred HHHHhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHH Confidence 0001112223333333333220 011222211110 11 11112234444431 22 333 Q ss_pred HHHHHHHHHHhhCCEE-EEEEEE-CCeE-EEEEEcCCeeEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeeccccee Q lcl|Aclame:pro 116 KSVKIVELAGGSGVSA-VKINIL-NGRP-SISVHSSSQFWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDK 191 (518) Q Consensus 116 ~~~~~~e~~~a~G~~~-~k~~~d-~~~i-~i~~v~ad~~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~ 191 (518) .+...+..++.+|+.+ +.+..+ .|++ .+-.++|+.+.+.... +. +...+|+. T Consensus 155 ~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~-------------~~~~~~~~----------- 210 (535) T protein:vir:10 155 LLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYSPRSK-------------DQPRKFEQ----------- 210 (535) T ss_pred HHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEcCccc-------------cCceEEEE----------- Confidence 3344556667777654 444333 4554 3667777777664221 11 00011110 Q ss_pred eeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEec-CcccCccccCCCCCcch Q lcl|Aclame:pro 192 EGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLIN-NSPSNTRYPHLNLGESD 270 (518) Q Consensus 192 ~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~-n~~~N~~~~~sPlG~S~ 270 (518) |.... ... .+ .... +.|++ ++ +......++|+|. T Consensus 211 --------------~~~~~-~~~---------~~----------------~~~e---iih~~~~~--~~~~~~~~~G~Sp 245 (535) T protein:vir:10 211 --------------FVSET-KSV---------KF----------------SERN---LTFINYWN--LSDTDRRGYGYSP 245 (535) T ss_pred --------------EecCc-eeE---------EE----------------Cccc---EEEEeccC--CCCcccccccccH Confidence 00000 000 00 0000 12222 21 1112235679999 Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCCcchh----heeeecCC--cCCCCCCCcc Q lcl|Aclame:pro 271 LSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDED----YFMQFKGT--LDAGAKLNDM 344 (518) Q Consensus 271 ~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~----~~~~~~~~--~~~~~~~~~~ 344 (518) +.-+...|.....+-.-..+-|+.|... ..+|............-....-.+ .|.+.... .-.-.+.+.. T Consensus 246 i~~~~~~i~~~~aa~~~~~~~f~ng~~p----~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~ 321 (535) T protein:vir:10 246 VEASIPLIRAIYDTEQFNARFFSQGGTT----RGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAKDAK 321 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCc----cEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCCCce Confidence 9888888877665554444556766542 111221111000000000000000 11111000 0000011234 Q ss_pred ceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 345 IQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWSLQDATV-RKIE-KKKRLIQNVYEQMLWDFL 421 (518) Q Consensus 345 i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t~-~t~~-~~~~~~~~~l~~li~~il 421 (518) ++.++....+.++++..+...+.|....|++|..+|+.+.+ -+..+ ...+.++ .++. .....++.+|..++..+- T Consensus 322 ~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~--~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie 399 (535) T protein:vir:10 322 FVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKS--GTKSVNEGSTAKAKLESSKDKGLTPLLSFIE 399 (535) T ss_pred EEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccch--hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH Confidence 66677777889999999999999999999999999874322 11111 0011111 1111 122233444555544443 Q ss_pred HHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcC-CCCHHHHHH-HH--HHHHH Q lcl|Aclame:pro 422 YLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHP-KWEDEEIQA-EV--KRIYL 497 (518) Q Consensus 422 ~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~-~~~eeea~e-ev--~rI~~ 497 (518) ........ . ..+..+.++|+.....|..++++...... +|.|+.-++.+++.. -...-++-- .+ ..... T Consensus 400 ~~ln~~Ll---~---~~~~~~~f~f~~l~~~d~~~r~~~~~~~~-~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~ 472 (535) T protein:vir:10 400 QVINDKIM---R---YVDTDYRFSFTLGDAQDKLQEEQVWKLKL-ANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFIN 472 (535) T ss_pred HHHhhhcc---c---ccCCeEEEEeccccccCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCCCCCccccccccchhhccc Confidence 33322111 1 11235788999888899888887776554 577999997766531 111100000 00 00000 Q ss_pred hccccCCCCchh-----------------ccCcCCCCC Q lcl|Aclame:pro 498 ENAIGEVPDPEA-----------------IGGMETKGG 518 (518) Q Consensus 498 E~~~~~~~dp~~-----------------~~~~~~~gG 518 (518) .++...+..|.. ......++| T Consensus 473 ~~~~~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~~g 510 (535) T protein:vir:10 473 ATGFGQPNVPDSSDDSGSTLGERERQERIQHSKDYEKG 510 (535) T ss_pred ccccccccCCCCCCCccccCCccccCcccccccccccC Confidence 000001111100 001111222 No 212 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=94.58 E-value=0.004 Score=33.72 Aligned_cols=429 Identities=11% Similarity=0.017 Sum_probs=156.9 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhh----hhhhhhhhccCCCCc--ccc-c----eecCchH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSK----DSYLTSLWAQGYVPT--VHD-K----LMNSGTG 69 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~~~w~~~~~~~--~~~-~----~~~~~l~ 69 (518) .=+.-.+..+++.=-.- + +.+. .........+... ....+.+|-.|++.. ... . ...-++. T Consensus 25 ~~~~~~~~~~~~~~~~~--~----~~~~--~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv 96 (576) T protein:vir:96 25 VPIDDGLQANIRNIEEK--S----KELN--KSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFGNNPIL 96 (576) T ss_pred hhcccChhHHHHHhhhh--h----hhhc--cccCCccchhhcceeeeeecCCCccccCcchhhhhhhHHHHHHhhcCHHH Confidence 11122344444222000 0 0000 0010000000000 001111222221100 000 0 0011234 Q ss_pred HHHHHHHHHHHcCCc-----------ceEEeccccc-cchHH--HHHHHHHHHh----h-----cChHHHHHHHHHHHHh Q lcl|Aclame:pro 70 NEIVVVAAEYISGKP-----------LSIDVTGVNG-SKDEN--LTKQLKEALR----I-----DNFDSKSVKIVELAGG 126 (518) Q Consensus 70 ~~i~~~~A~ll~~e~-----------~~i~v~~~~~-~~d~~--~~~~l~~vl~----d-----n~f~~~~~~~~e~~~a 126 (518) ..+++..|+-+..-. ..|..-..+. ..++. ....+...+. + ..+...++..+...+. T Consensus 97 ~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll 176 (576) T protein:vir:96 97 NAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYT 176 (576) T ss_pred HHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHh Confidence 445555554432211 1111111110 01111 1112222222 1 1244455566667788 Q ss_pred hCCEEEEEEEEC---CeE-EEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEE Q lcl|Aclame:pro 127 SGVSAVKINILN---GRP-SISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFV 201 (518) Q Consensus 127 ~G~~~~k~~~d~---~~i-~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I 201 (518) .|.+++.+.++. |++ .+-.++|+.+-+... +|.. |++..+ T Consensus 177 ~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg~~-----------------~~~~~~------------------ 221 (576) T protein:vir:96 177 YDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDKNGKI-----------------IKGGKR------------------ 221 (576) T ss_pred cCCeEEEEEEecCCCCceEEEEEeCCceeEEEECCCCce-----------------eeeeeE------------------ Confidence 899988877653 333 466677777766532 2221 111000 Q ss_pred EEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHH Q lcl|Aclame:pro 202 TYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAV 281 (518) Q Consensus 202 ~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~l 281 (518) +..+. ++...+ ...... .+++++++..+ ....++|+|.+..+...|... T Consensus 222 -~~~~~-~~~~~~-------------------------~~~~~d--ii~~~~~~~~d--~~~~~~G~Spi~~a~~~i~~~ 270 (576) T protein:vir:96 222 -FVQVI-NKKVVA-------------------------SFTSRE--MAMGIRNPRTE--LSSSGYGLSEVEIAMKQFIAY 270 (576) T ss_pred -EEEec-CCceEE-------------------------Eecccc--eEEEeecCCCC--cccCcccccHHHHHHHHHHHH Confidence 00000 000000 000000 12233443221 123567999998888887665 Q ss_pred HHHHHHHHHHHHhcc-ceeee--chhh-hccCCCCCccccccCCCcchhheeeecCCc--CCCCCCCccceEecccccHH Q lcl|Aclame:pro 282 DYFFTVYMREGEKTK-TKIAA--SERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTL--DAGAKLNDMIQFMQGDFRDG 355 (518) Q Consensus 282 D~~~s~~~~e~~~g~-~ri~v--~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~ir~~ 355 (518) ..+-.-..+=|+.|. ++-++ +... +.. ...... ...-...|.+..... -.-.+.+..++.++....+. T Consensus 271 ~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~-----e~~~~l-r~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~ 344 (576) T protein:vir:96 271 NNTETFNDRFFSHGGTTRGILQIKSEQQQSQ-----RALENF-KREWKSSFSGINGSWQVPVVMADDIKFVNMTPTANDM 344 (576) T ss_pred HHHHHHHHHHHhccCCCceEEEeCCCCCCCH-----HHHHHH-HHHHHHHhccccccccceeecCCCceEEeccCChhhH Confidence 544333334456654 33222 2110 000 000000 000001111110000 00012234577778888899 Q ss_pred HHHHHHHHHHHHHHHHhCCCccccccCCcc-chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccC Q lcl|Aclame:pro 356 SYRETMEYFAQKAVSKSGYNPATFNLGNRE-VKATEIWSLQDATVRKIEK-KKRLIQNVYEQMLWDFLYLLTGGTNNKEK 433 (518) Q Consensus 356 ~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t~~t~~~-~~~~~~~~l~~li~~il~l~~~~~~~~~~ 433 (518) ++++..+...+.|....|++|..+|+...+ .+++... .+-++.++.. ....++.+|..++..+........... T Consensus 345 qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~--~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~-- 420 (576) T protein:vir:96 345 QFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGG--NTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISE-- 420 (576) T ss_pred HHHHHHHHhHHHHHHHhCCCHHHccccccccccccccc--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-- Confidence 999999999999999999999999874322 2221100 0011111111 122334445554444433332211111 Q ss_pred CCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCC-CCH-H-----------------------HH Q lcl|Aclame:pro 434 AIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPK-WED-E-----------------------EI 488 (518) Q Consensus 434 ~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~-~~e-e-----------------------ea 488 (518) ....+.++|...-..+..+..... ....+|+|+.-++.+.+... ... + .. T Consensus 421 ----~~~~~~~~f~r~d~~~~~e~~~~~-~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~ 495 (576) T protein:vir:96 421 ----YSDKYVFQFVGGDTKSELDKIKIL-QEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQ 495 (576) T ss_pred ----ccCceEEEeccCCHHHHHHHHHHH-HHHhcCccCHHHHHHHhCCCCCCCcceeccccccccccccccCCCCCCccc Confidence 122456777655443333333322 33457999999977665211 110 0 00 Q ss_pred HHHHHHHHHh-cc-ccC-----CCCchhccCcCCCCC Q lcl|Aclame:pro 489 QAEVKRIYLE-NA-IGE-----VPDPEAIGGMETKGG 518 (518) Q Consensus 489 ~eev~rI~~E-~~-~~~-----~~dp~~~~~~~~~gG 518 (518) ++-+..+.+. +. ... ++++..-|....+.| T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~~~ 532 (576) T protein:vir:96 496 KERFDMIQQFLNSPDDEEPQQESTEDKVDGRESNDPT 532 (576) T ss_pred cccccccccccCCCCCCCCCCCCCCCcccccccccCC Confidence 0000001000 00 000 000011111111111 No 213 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=94.47 E-value=0.0043 Score=33.55 Aligned_cols=436 Identities=15% Similarity=0.102 Sum_probs=194.5 Q ss_pred CCcCc-----------------------------hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhh Q lcl|Aclame:pro 1 MGVWS-----------------------------VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLW 51 (518) Q Consensus 1 ~~~~~-----------------------------~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w 51 (518) ||.+- ..-+|.. ..|.. ..+.++|.+|+.+.. .++.. .+.. T Consensus 5 fgf~~~~~~~~~~~~~s~~~p~~ddg~~~~~~~g~~~~~~~--~~~~~-~~~~eLI~~YR~ma~--~pEvd-~Av~---- 74 (558) T protein:vir:10 5 FGFSIEETQKKSTSIISPVPKNNEDGVDNFISSGFYGQYVD--IEGAY-RSEYDLIRRYREMAL--HPEAD-GAIE---- 74 (558) T ss_pred hcchhhhhhhhccCCccccCCCccccccceeccceeeeeec--ccchh-hhHHHHHHHHHHHhh--ccchh-hHHH---- Confidence 11111 0001110 12332 245666666665531 11110 0000 Q ss_pred ccCCCCccccceecCchHHHHHHHH-HHHHcCCcceEEecccccc--chHHHHHHHHHHHhhcChHHHHHHHHHHHHhhC Q lcl|Aclame:pro 52 AQGYVPTVHDKLMNSGTGNEIVVVA-AEYISGKPLSIDVTGVNGS--KDENLTKQLKEALRIDNFDSKSVKIVELAGGSG 128 (518) Q Consensus 52 ~~~~~~~~~~~~~~~~l~~~i~~~~-A~ll~~e~~~i~v~~~~~~--~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G 128 (518) .|+.+. ..=-..+|.+|.+...+.+ -.++..+.++.|+.--+|..+..+.+..+-+-| T Consensus 75 -------------------eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDg 135 (558) T protein:vir:10 75 -------------------DVVNEAIVSDLYDSPVEVELSNLNASNTLKKKIREEFRYIKEMMDFDKKSHEIFRNWYVDG 135 (558) T ss_pred -------------------HhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeee Confidence 000000 0001122344554444332 245667778888888899999999999999999 Q ss_pred CEEEEEEEECCe-----EEEEEEcCCeeEEEEE----cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccce Q lcl|Aclame:pro 129 VSAVKINILNGR-----PSISVHSSSQFWIDFK----NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGG 199 (518) Q Consensus 129 ~~~~k~~~d~~~-----i~i~~v~ad~~~P~~~----~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~ 199 (518) .++|.-++|..+ ..+.+++|-++-++.. ..+...+..+ + +... + ...++ T Consensus 136 RiyfHKiid~k~pk~GI~ELr~lDPr~i~~Vr~i~~~~~~~~~~~~~---~-~~~~-~-----------------~~~~~ 193 (558) T protein:vir:10 136 RVFYLKVIDTKNPQEGIQDLRYIDPLKIKFIRQEKRKPGNQDPAIRV---R-SEQD-V-----------------VPNPE 193 (558) T ss_pred EEEEEEEEeCCCccccceeeeeeCcccceeeeeeccccccccceeee---e-cccc-e-----------------eeccc Confidence 999999998542 4567777777655321 0111111100 0 0000 0 01133 Q ss_pred EEEEEEEeccCCcccccc-ccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHH Q lcl|Aclame:pro 200 FVTYSVIKIDGDKTTPIS-AERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYL 278 (518) Q Consensus 200 ~I~n~ly~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i 278 (518) +.++.+|........... ....... + -++.. .++|.-- + -.+..+..=+|-+..|+-.+ T Consensus 194 ~~eyy~Y~~~~~~~~~~~~~~~~~~~---v----kI~~d----------AI~y~hS-G--L~d~~~~~i~syLhkAIKp~ 253 (558) T protein:vir:10 194 FEEFYIYTPKVQHPTGMVGQMGGKNS---I----KIAKD----------SITMCTS-G--LVDRNKNRVLSYLHKAIKAL 253 (558) T ss_pred eeEeeeecCCcccccccceeecCCCc---e----eechh----------heeeecc-c--ceecCCCeeeecchHhhHhH Confidence 344444532211000000 0000000 0 00000 1111100 0 00001111235555666555 Q ss_pred HHHHHHHHH--HHHHHHhccceeee-chhhhccC------------------CCCCccccccCCCcchhheeeecCCcC- Q lcl|Aclame:pro 279 FAVDYFFTV--YMREGEKTKTKIAA-SERMFRKK------------------VNKSTDKEEWSMNVDEDYFMQFKGTLD- 336 (518) Q Consensus 279 ~~lD~~~s~--~~~e~~~g~~ri~v-~~~~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~~~~- 336 (518) ..|=-.-+. +.|-.|+-++|||- +-.=|++. -+..++ .-.+++.|+.+..++. T Consensus 254 NQLkmlEDAlVIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TG-----ev~ddrk~msMlEDyWL 328 (558) T protein:vir:10 254 NQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTG-----EVRDDRKFMSMMEDFWL 328 (558) T ss_pred HhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCc-----eecccchhhhhHhhhcc Confidence 555333332 22344555677763 11111110 011111 1123445554443332 Q ss_pred ---CCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc-c-chHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 337 ---AGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR-E-VKATEIWSLQDATVRKIEKKKRLIQN 411 (518) Q Consensus 337 ---~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~-~-~TAtEi~s~~~~t~~t~~~~~~~~~~ 411 (518) .|+.+ ..|+.+ |...--.-+..+..+.+.+....+.+.+-+..+++ . .-++||.+..-+-...+.+.|..+.. T Consensus 329 pRReGgrg-TEItTL-pGgqnLgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~ 406 (558) T protein:vir:10 329 PRREGGRG-TEITTL-PGGQNLGELSDVDYFQKKLYRALGVPESRIAAEGGFNLGRSSEILRDELKFAKFVGRLRKRFAA 406 (558) T ss_pred cccCCCCc-cceeec-cccCCcchHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH Confidence 12222 223322 33333334556777778888888888888765432 1 24567766665555566666666666 Q ss_pred HHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH-------HHHHHH--hCCCCCHHHHHHHHcCC Q lcl|Aclame:pro 412 VYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS-------TLNNMN--SALAMSVEEKVKLIHPK 482 (518) Q Consensus 412 ~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~-------~~~~~~--~aG~~S~~~~v~~~~~~ 482 (518) -+.++++.=|-|-.-. .. .-...-...|.++|...-.-.+...++ .++.+. -+...|.++..+.. -. T Consensus 407 lF~~~Lk~qLilKgii-t~--eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~I-Lr 482 (558) T protein:vir:10 407 MFNDMLKTQLVLKNIV-TP--EDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYSTEYVRKRV-LR 482 (558) T ss_pred HHHHHHHHhhhhccCC-CH--HHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH-hc Confidence 6666665544331100 00 000001134667776433333322222 222221 12356888877665 36 Q ss_pred CCHHHHHHHHHHHHHhccccCCCCchhcc----CcCCCCC Q lcl|Aclame:pro 483 WEDEEIQAEVKRIYLENAIGEVPDPEAIG----GMETKGG 518 (518) Q Consensus 483 ~~eeea~eev~rI~~E~~~~~~~dp~~~~----~~~~~gG 518 (518) +||+|.++|-+.|++|....--++|.... +.-+.+| T Consensus 483 ~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~ 522 (558) T protein:vir:10 483 QTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITGEPLPQEG 522 (558) T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCccccChhhccccCccC Confidence 89999999999999998777666665321 1112222 No 214 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=94.44 E-value=0.0044 Score=33.50 Aligned_cols=385 Identities=12% Similarity=0.032 Sum_probs=147.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHH--HHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGN--EIVVVAAE 78 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~--~i~~~~A~ 78 (518) |+++.-....+..+| ...+.+. .....+...+.... .+..+. .+++.+|+ T Consensus 1 m~~~~~~~~~~~~~~---------------~~~~~~~--------~~~~~~~g~~~~~~-----Al~~~~V~~cv~~ia~ 52 (417) T protein:vir:38 1 MKLFRGLATEVDPHW---------------ADHLLDS--------GVIPSFRGGYLGIS-----ALRNSDVLTAVSIVSG 52 (417) T ss_pred CccccccccCCCccc---------------hhhhccc--------ccccccCCceechh-----hcccHHHHHHHHHHHH Confidence 555432222221111 0000000 00000111111111 112222 24455565 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHhh--cCh--HHHHHHH-HHHHHhhCCEEEEEEEE--CCeEE-EEEEcCCe Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRI--DNF--DSKSVKI-VELAGGSGVSAVKINIL--NGRPS-ISVHSSSQ 150 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n~f--~~~~~~~-~e~~~a~G~~~~k~~~d--~~~i~-i~~v~ad~ 150 (518) -|-+-|+.+.-...+...+ +..+..+|.. |.. ...|.+. +...+-.|.+++.+.-+ ++.+. +.+++|+. T Consensus 53 ~iA~lp~~~~~~~~~~~~~---~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~ 129 (417) T protein:vir:38 53 DVSRFPLVITDSSTDEVID---LANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQ 129 (417) T ss_pred hhccCeeEEEEcCCcceec---cchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCce Confidence 5555455443222222111 1122233321 111 1123333 44455557777666544 23333 45566666 Q ss_pred eEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~ 230 (518) +.+...+. ...+|+. ...++..... T Consensus 130 v~v~~~~~---------------~~~~y~~-------------------------~~~~~~~~~~--------------- 154 (417) T protein:vir:38 130 TQVDTSDP---------------DNIIYRF-------------------------TPYNSSMQKV--------------- 154 (417) T ss_pred EEEEEcCC---------------CeEEEEE-------------------------EEcCCcEEEE--------------- Confidence 65532211 0111110 0000000000 Q ss_pred cccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhccC Q lcl|Aclame:pro 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRKK 309 (518) Q Consensus 231 ~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~~ 309 (518) +... -+.|++....| .-.|+|.+.-+...|.....+-.....-|+.|.. ..++ ... T Consensus 155 ---~~~~----------dviH~r~~~~d-----~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il-----~~~ 211 (417) T protein:vir:38 155 ---CGFE----------DVIHWKFFSYD-----TIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIK-----AKE 211 (417) T ss_pred ---ecCc----------ceEEecCCCCC-----CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEE-----EeC Confidence 0000 02344432212 2359999888877776555544444445566543 2222 111 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCC----CCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAG----AKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE 385 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~ 385 (518) ..-.... .+.-.+.|....+....+ -+++..++.++....+.++++..+...+.|....|++|..++..+.. T Consensus 212 ~~l~~e~----~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~ 287 (417) T protein:vir:38 212 SRLSAEA----RQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNSPN 287 (417) T ss_pred CCCCHHH----HHHHHHHHHHHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCCCCcc Confidence 1100000 000011121111111111 01223466666677778888888888889999999999999743322 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) .++.+. .. ..++.+|..++..+........ +.... .....|.|+-.- .+... ...+.+++ T Consensus 288 s~~e~~---~~----------~~~~~tl~P~~~~ie~~l~~~L---l~~~~--~~~~~~~fd~~~-l~~~~-~~~~~~~~ 347 (417) T protein:vir:38 288 QSVKQL---AD----------DYIRNDLPFYFEPITSEFELKL---LDDAQ--RHQYCIGFDTKS-VNGLP-IADVNTAV 347 (417) T ss_pred hhHHHH---HH----------HHHHHHHHHHHHHHHHHHHhhh---cChhh--cccceEEechhh-hhHHH-HHHHHHHH Confidence 222221 11 1223344444443332222111 11111 113456665322 12222 33466778 Q ss_pred hCCCCCHHHHHHHHcC-CCCHHHHHHH--------HHHHHHhc----cccCCCCchhccCcCCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIHP-KWEDEEIQAE--------VKRIYLEN----AIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~~-~~~eeea~ee--------v~rI~~E~----~~~~~~dp~~~~~~~~~gG 518 (518) .+|+|+.-++.+++.. ...+-++++- +....+++ ......++..-+..|+.|+ T Consensus 348 ~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~~~~~~~kgg~~~~~~~~~~~~~ 413 (417) T protein:vir:38 348 NGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAEHAAELKGGDTNAKGNQNGSGT 413 (417) T ss_pred hCCCcCHHHHHHHhCCCCCCCCCCCeeeecccccccccccccccccccccCCCCCCCCCCCcCCCC Confidence 8999999998777632 1222221110 00111111 0111111111122222222 No 215 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=94.38 E-value=0.0046 Score=33.41 Aligned_cols=399 Identities=11% Similarity=0.034 Sum_probs=146.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+.+-|-.....= . .| ...+.. +......++.........-....+--..+++.+|+-+ T Consensus 1 Mg~~~~~~~~~~~~-~-~~----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~i 60 (423) T protein:vir:81 1 MGFLQKLGLAPSVV-A-TP----------------EPIELV--GPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNV 60 (423) T ss_pred CchhHhhccccccc-c-Cc----------------cccccc--cccccccccccchhhHHHHHHhhhHHHHHHHHHHHhH Confidence 88877663222100 0 00 000000 0000000000000000000001111224556666666 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcC---hHHHHHHH-HHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDN---FDSKSVKI-VELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFK 156 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~---f~~~~~~~-~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~ 156 (518) .+=|..+--...++......+..+..++..-+ -...+.+. +...+-.|.+++-+.-+.+.. ...+++.- T Consensus 61 a~lp~~~~~~~~dg~~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~-------~~~~~l~p 133 (423) T protein:vir:81 61 ASLQLQAFERVEDGGRERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVD-------TPTLDIRP 133 (423) T ss_pred hhCceEEEEEecCCceeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcC-------cceEEEee Confidence 55444331111111111111112333333221 11223333 344555577665544332211 01111110 Q ss_pred cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcc Q lcl|Aclame:pro 157 NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQL 236 (518) Q Consensus 157 ~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 236 (518) . ....+-+..... +.+.+.|..+....... .. . .+.. T Consensus 134 ~--~~~~v~~~~~~~-------------------------~~~~~~Y~~~~~~~~~g---~~----~---------~~~~ 170 (423) T protein:vir:81 134 I--PVSWVQRRAYKD-------------------------GWGSLDYIIIESGDNDG---RS----V---------KVPG 170 (423) T ss_pred c--ccceeeeeeccC-------------------------CCcceEEEEEEecCCCc---eE----E---------EEcc Confidence 0 000000000000 01112222221111000 00 0 0000 Q ss_pred cceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhcc-ceeeechhhhccCCCCCc Q lcl|Aclame:pro 237 NHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMRE-GEKTK-TKIAASERMFRKKVNKST 314 (518) Q Consensus 237 ~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e-~~~g~-~ri~v~~~~l~~~~~~~~ 314 (518) --+.|+++...+. ...|+|...-+.+.+.....+ .++... |+.|- +.-++ ........ T Consensus 171 ----------~evih~r~~~~~~----~~~G~spi~~~~~~i~~~~~~-~~~~~~~f~ng~~p~gvi-----~~~~~~~~ 230 (423) T protein:vir:81 171 ----------ERVIHRHGYNPKT----MKRGKSPVQSLRDILGEQIEA-AIFRAQMWRNGPRPGMVI-----MRDPESKA 230 (423) T ss_pred ----------cceEEecCCCCCC----ccccccHHHHHHHHHHHHHHH-HHHHHHHHhccCCCceEE-----EecCcccC Confidence 0134455443332 225999988877777654443 333333 45543 33232 11111000 Q ss_pred cccccCCCcchhh---eeee-cCCcC-C----CCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc Q lcl|Aclame:pro 315 DKEEWSMNVDEDY---FMQF-KGTLD-A----GAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE 385 (518) Q Consensus 315 ~~~~~~~d~d~~~---~~~~-~~~~~-~----~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~ 385 (518) . ....+..++. +... .+... . --+++..++.++....+.++++..+.....|....|++|..+|..+++ T Consensus 231 ~--~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~ 308 (423) T protein:vir:81 231 G--KWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNA 308 (423) T ss_pred c--cCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCC Confidence 0 0000000000 1000 00000 0 001123466666666788888888888888999999999999864333 Q ss_pred -chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 386 -VKATEIWSLQDAT-VRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNN 463 (518) Q Consensus 386 -~TAtEi~s~~~~t-~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~ 463 (518) .+..|- ..... -.++.-+...++.+|...+ ... .......+-+.+++++-+..|.+++++.+++ T Consensus 309 t~sn~e~--~~~~f~~~~L~P~~~~ie~~l~~~L-----------~~~-~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~ 374 (423) T protein:vir:81 309 NYSNVRE--FRKALYGDNLGSWIRIIQDVMNLFL-----------LPR-VGIDNEKFYFEFNLEEKLRASFEEAAEIKRA 374 (423) T ss_pred CcccHHH--HHHHHHHHHHHHHHHHHHHHHhhhh-----------cCc-cccccCccEEEecchhhhccCHHHHHHHHHH Confidence 222221 11111 1123333333333222211 100 0111123346666777788899999999888 Q ss_pred HH-hCCCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 464 MN-SALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 464 ~~-~aG~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++ ++|+|+.-++.+.+ ++.. +..++ + +...+ ...+..+..+| T Consensus 375 ~l~~~G~~T~NE~R~~~--gl~p~~gGD~-~--~~p~n--------~~~~~~~~~~~ 418 (423) T protein:vir:81 375 AVGNVAWMTINEVRAMD--NLPSIDGGDD-L--ARPLN--------TEFGDSEDAPG 418 (423) T ss_pred HHhCCCCcCHHHHHHHh--CCCCCCCcce-e--ecccc--------cccCccCCCCC Confidence 76 56999998877665 2322 11111 1 00111 01111222223 No 216 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=94.22 E-value=0.005 Score=33.18 Aligned_cols=420 Identities=12% Similarity=0.079 Sum_probs=192.6 Q ss_pred CCcCchHH--H-HHHHHh--cCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMT--R-FIKGWL--NGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVV 75 (518) Q Consensus 1 ~~~~~~~~--~-~~~~w~--~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~ 75 (518) -+..++-+ . +-+..+ .+++- .+.++|.+|+.+.. .++.. .+..... -..-....... T Consensus 44 ~~~~~~~~~~gg~~~~~~~~e~~~~-~~~eLI~~YR~ma~--~pEvd-~Av~eIV-neaiv~d~~~~------------- 105 (521) T protein:vir:81 44 INDNLPASAWNSLTQQFYSTDQKIS-TTKQLVNTYRGLMN--NHEVE-NAVQNIV-NDAIVFEEGHE------------- 105 (521) T ss_pred ccCCCcceeecceeeeecccccchh-hHHHHHHHHHHHhh--ccchh-hHHHHhh-cceeEecCCCc------------- Confidence 00010100 0 001111 22221 45677877776532 12211 1110000 00001111112 Q ss_pred HHHHHcCCcceEEecccc--ccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC----CeEEEEEEcCC Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVN--GSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN----GRPSISVHSSS 149 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~--~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~----~~i~i~~v~ad 149 (518) |.++.+...+ .+-.++..+..+.|+.--+|..+..+.+..+-+-|.++|...++. |=..+.+++|- T Consensus 106 --------pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~pk~GI~Elr~lDPr 177 (521) T protein:vir:81 106 --------VVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPR 177 (521) T ss_pred --------eEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEEcCCccccceeeeeeCCc Confidence 2333332221 112355677788888888899999999999999999999988763 22456777777 Q ss_pred eeEEEEEcCcEEEEEEEEEEEecCc--eEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccc Q lcl|Aclame:pro 150 QFWIDFKNNEPFRFNFFEEIPTSNK--ADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITS 227 (518) Q Consensus 150 ~~~P~~~~g~~~~~~f~~~~~~~~~--~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~ 227 (518) ++-+... ..+.+. ..++ +++..|-+|.-........... ...... T Consensus 178 ~i~~vr~------------i~k~~~~~~~v~-------------------~~~~e~f~Y~~~~~~~~~~g~~--~~~~~~ 224 (521) T protein:vir:81 178 NLEYVRE------------IITEDTPEGKIY-------------------KATKEYFIYTVGNSSYCAGGQV--FSPNSR 224 (521) T ss_pred ceeeeee------------ecccccCcccee-------------------cceeeeeeeecCCcccccccee--ecCCcc Confidence 7666422 111111 0111 1112222221110000000000 000000 Q ss_pred ccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH--HHHHHhccceeee-chh Q lcl|Aclame:pro 228 YLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY--MREGEKTKTKIAA-SER 304 (518) Q Consensus 228 ~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~ 304 (518) + -++. -.++|.- .+-.+.....=+|-+..|+-.+..|=-.-+.+ .|-.|+-++|||- +-. T Consensus 225 v----kI~~----------dAI~y~h---SGl~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvG 287 (521) T protein:vir:81 225 V----KIPR----------SAITYAH---SGLMDCDDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTG 287 (521) T ss_pred e----eech----------hheeeee---ccceeCCCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecC Confidence 0 0000 0111211 11122222223466666666666553333332 2444566677763 111 Q ss_pred hhccC-------------C-----CCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHHH Q lcl|Aclame:pro 305 MFRKK-------------V-----NKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETME 362 (518) Q Consensus 305 ~l~~~-------------~-----~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~ 362 (518) =|++. . +..++. ..+++.++.+..+.. .|+.+ ..|+.+ |...--.-.+.+. T Consensus 288 nlpk~KAeqYl~~im~k~kNklvYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrg-TEItTL-pGgqnlgem~DV~ 360 (521) T protein:vir:81 288 NMNNRKAAQHMNSVAQSFKNRVVYDASTGK-----LKNQQANLSMTEDYWLQRRDGKAI-TDVTTL-PGASGMSDIDDIR 360 (521) T ss_pred CCCchhHHHHHHHHHHhcCceeEeeccccc-----ccccccccchhhhhcccccCCCcc-cceeec-ccCCCCChHHHHH Confidence 11110 0 111111 123444554443332 12222 223332 2323333456667 Q ss_pred HHHHHHHHHhCCCccccccCCc-c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCC Q lcl|Aclame:pro 363 YFAQKAVSKSGYNPATFNLGNR-E---VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRD 438 (518) Q Consensus 363 ~~l~~i~~~~G~s~~tf~~d~~-~---~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~ 438 (518) .+.+.+....+.+.+-+..++. . .-++||....-+-...+.+.|..+..-+.++++.=|-| ++.... T Consensus 361 YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLil---------Kgiit~ 431 (521) T protein:vir:81 361 YFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFSKFIRTRQSQFSEVLRDPLKYNLIL---------KNVITE 431 (521) T ss_pred HHHHHHHHHhCCccccccCCCCcceeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hcCCCH Confidence 7778888888988888854321 1 24667766665555566666666666666666554433 222111 Q ss_pred ------ceeeEEEeCCCCCCCHHHHHHH-------HHHHH--hCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccC Q lcl|Aclame:pro 439 ------EIRVIIEFPDPMSVNLNELSST-------LNNMN--SALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGE 503 (518) Q Consensus 439 ------~~~v~v~f~D~i~~d~~~~~~~-------~~~~~--~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~ 503 (518) ...|.++|...-.-.+...++. ++.+. -+...|.++..+.. -.+||+|.++|-+.|++|....- T Consensus 432 eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~I-Lr~tDeei~~~~k~I~~E~~~~~ 510 (521) T protein:vir:81 432 DDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDI-LKYTDDQMDTEKKQIEEEANDPR 510 (521) T ss_pred HHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH-hccCHHHHHHHHHHHHHHhhCCC Confidence 1236777764333333222222 22221 12356888876665 36899999999999999988776 Q ss_pred CCCch-hccCc Q lcl|Aclame:pro 504 VPDPE-AIGGM 513 (518) Q Consensus 504 ~~dp~-~~~~~ 513 (518) -++|. ..++| T Consensus 511 ~~~p~~~~~~f 521 (521) T protein:vir:81 511 FKQTPDEIEDF 521 (521) T ss_pred CCCCcccccCC Confidence 66665 55566 No 217 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=94.16 E-value=0.0052 Score=33.10 Aligned_cols=395 Identities=10% Similarity=0.007 Sum_probs=163.3 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+ .-||.+.|...... |.. +.+. + ....|..+..- .....+...--..+++.+|+-+ T Consensus 1 m~~--------~~~~~~~~~~~~~~----~~~-~~~~---~-----~~~~~~~g~~v-~~~~al~~~~v~~~i~~ia~~i 58 (419) T protein:vir:57 1 MFI--------PQFWKGRPSENRVN----WQV-VPGG---M-----RSSSSQAGVII-TPETALALSAVRACVTLLAESV 58 (419) T ss_pred Ccc--------hhhhccCCcccccc----ccc-cccc---c-----ccccccCCcee-chHHhhccHHHHHHHHHHHHhh Confidence 554 33666655321111 100 0000 0 00001110000 0111222222234455555555 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWI 153 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P 153 (518) -+=|..+-=...++.......-.+..+|.. | ....-.+..+...+..|.+++.+..+ +|++ .+..++|+.+-+ T Consensus 59 a~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v 138 (419) T protein:vir:57 59 AQLPCVLYRRTENGGREIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIV 138 (419) T ss_pred ccCceEEEEEcCCCceeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEE Confidence 443433311111111111111123333321 1 22222334444555667776666544 3443 455555555544 Q ss_pred EEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 154 ~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) .-. +.+.+|+.. ... +. + . T Consensus 139 ~~~----------------~~g~~~y~~-------------------------~~~-~~-~----~-------------- 157 (419) T protein:vir:57 139 LKG----------------PDGMPYYDI-------------------------PSI-GE-I----L-------------- 157 (419) T ss_pred EEC----------------CCceEEEEE-------------------------cCC-ce-E----E-------------- Confidence 311 111111110 000 00 0 0 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNK 312 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~ 312 (518) +.+ -+.|+++... +..+|.|.+..+...|.....+-.....-|+.|. +.-++.. +...+. T Consensus 158 -~~~----------~vih~r~~~~-----d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~---~~~~~~ 218 (419) T protein:vir:57 158 -PMR----------MVHHIKSFSL-----DGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIER---PFEAKA 218 (419) T ss_pred -chh----------hEEEecCcCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEe---cCcCCc Confidence 000 1234443321 2356999998888887765554444444456644 4333210 000010 Q ss_pred Cccccc--cCCCcchhheeeec--CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-ch Q lcl|Aclame:pro 313 STDKEE--WSMNVDEDYFMQFK--GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-VK 387 (518) Q Consensus 313 ~~~~~~--~~~d~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~T 387 (518) ...... .....-.+.|.... +.. .--+++..++.++...++.++.+..+...+.|....|++|..++..+.. .+ T Consensus 219 ~~~~e~~~~~~~~~~~~~~g~~nag~~-~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~s 297 (419) T protein:vir:57 219 IASQAAVDAILAKWTERYGGVRNAFSV-GMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNN 297 (419) T ss_pred ccCHHHHHHHHHHHHHHhccccccccc-eecCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCccc Confidence 000000 00000001111100 000 0012234567777788899999999999999999999999999864332 12 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhC Q lcl|Aclame:pro 388 ATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSA 467 (518) Q Consensus 388 AtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~a 467 (518) ..|- + ....++.+|..++..+........ +.......+.|.+++++.+..|.+++++.+.+++++ T Consensus 298 n~e~----~--------~~~f~~~~l~P~~~~ie~~l~~~l---l~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~ 362 (419) T protein:vir:57 298 NIEH----Q--------GLQYVIYTMLAILKRHESAMMRDL---LLPSERRDFYIEFNVSSLLRGDQKSRYESYALGRQW 362 (419) T ss_pred cHHH----H--------HHHHHHHHHHHHHHHHHHHHHhhc---cCccccCCeEEEEechhhhccCHHHHHHHHHHHHhC Confidence 1111 1 111233344444444433222111 111111245677888888889999999999999999 Q ss_pred CCCCHHHHHHHHcCCCCH-HHHHHHH--------HHHHHhccccC--CCCchhccCcCC Q lcl|Aclame:pro 468 LAMSVEEKVKLIHPKWED-EEIQAEV--------KRIYLENAIGE--VPDPEAIGGMET 515 (518) Q Consensus 468 G~~S~~~~v~~~~~~~~e-eea~eev--------~rI~~E~~~~~--~~dp~~~~~~~~ 515 (518) |+|+.-++.+++. +.. +..++-+ +.+.+.+..+. .++......+.. T Consensus 363 G~~T~NE~R~~~g--l~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (419) T protein:vir:57 363 GWLSVNDIRRMEN--LTPIPGGDKYLTPLNMVDSKALTGIGKATPQQLKDIEAILCTRN 419 (419) T ss_pred CCcCHHHHHHHhC--CCCCCCcCeeeeccccccccccccccCCCcccCcchhhhhhccC Confidence 9999999887663 221 1111110 00111000000 000111111111 No 218 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=94.04 E-value=0.0056 Score=32.94 Aligned_cols=433 Identities=16% Similarity=0.132 Sum_probs=192.1 Q ss_pred CCcCchHHHHHHHHh------cC-CCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWL------NG-KPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIV 73 (518) Q Consensus 1 ~~~~~~~~~~~~~w~------~g-~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~ 73 (518) =|+. .+ -.+|| .| ..-..+.++|.+|+.+.. .++.. .+. ..|+ T Consensus 27 ~~~~-~i---~~g~~g~~v~~~g~~~~~n~~eLI~~YR~ma~--~pEVd-~Av-----------------------~eIV 76 (564) T protein:vir:10 27 ASVS-TV---AGGYFGTYVDTSGGQNSRNEYELIRRYRDMSL--HPEVD-SAI-----------------------DEIV 76 (564) T ss_pred CChh-hh---hccccceeeecccccchhhHHHHHHHHHHHhh--ccchh-hHH-----------------------HHhh Confidence 1110 00 12221 11 122345677777766531 11110 000 0111 Q ss_pred HHHHHHHcC----CcceEEeccccc--cchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe-----EE Q lcl|Aclame:pro 74 VVAAEYISG----KPLSIDVTGVNG--SKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR-----PS 142 (518) Q Consensus 74 ~~~A~ll~~----e~~~i~v~~~~~--~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~-----i~ 142 (518) .+ .++. +|.++.++..+- +-.+...+.++.|+.--+|..+..+.+..+-+-|.++|...+|.++ .. T Consensus 77 ne---aIv~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~e 153 (564) T protein:vir:10 77 NE---FVVNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILRMMNFNVNAHEIIRNWYVDGRSHYHKVIDLDNPKKGILE 153 (564) T ss_pred cc---eeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEeeCCChhhhhhh Confidence 11 1111 122333322221 1124466677888888889999999999999999999998887433 34 Q ss_pred EEEEcCCeeEEEEEc-----CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccC--Ccccc Q lcl|Aclame:pro 143 ISVHSSSQFWIDFKN-----NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDG--DKTTP 215 (518) Q Consensus 143 i~~v~ad~~~P~~~~-----g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~--~~~v~ 215 (518) +.+++|-++-+++.. -..++++ ++.. ..|... +...+.+|.-.+ ++. + T Consensus 154 Lr~lDPr~i~~vr~i~~~~~~~~~~v~------k~~~-~~~~y~-----------------~~~Eyy~Ynp~~~~g~~-~ 208 (564) T protein:vir:10 154 LRYIDSLKIRKVRQKLKDVDPNRKEIE------KGTA-LQYDYG-----------------DFIEYYIYNPKGFAGNI-P 208 (564) T ss_pred hhhhcccceeeeeeeccccccccceee------eeee-eecccc-----------------ccccceeeccccccCcc-c Confidence 677777776665421 1111111 0100 001000 001122222110 000 0 Q ss_pred ccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH--HHHHH Q lcl|Aclame:pro 216 ISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY--MREGE 293 (518) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~--~~e~~ 293 (518) + ..... .+.. .....++ .-+++|..-- -.+.....=+|-+..|+-.+..|=-.-+.+ .|-.| T Consensus 209 ~-----~~~~~---~~~~-~~~ikI~----~daI~y~hSG---L~d~~~~~i~gyLhkAIKp~NQLkmlEDAlVIYRitR 272 (564) T protein:vir:10 209 M-----VTGSM---DWSN-QEGIKIA----SDAIAQSTSG---LMDLNKKMTLSFLHKAIKSLNQLRMIEDSLVIYRLSR 272 (564) T ss_pred c-----ccccc---cccc-ccceeec----hhhcceeccc---ceeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhc Confidence 0 00000 0000 0000000 0112221110 011112223455566665555553333332 23445 Q ss_pred hccceeee-chhhhccC------------------CCCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecc Q lcl|Aclame:pro 294 KTKTKIAA-SERMFRKK------------------VNKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQG 350 (518) Q Consensus 294 ~g~~ri~v-~~~~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~ 350 (518) +-++|||- +-.=|++. -+..++. -.+++.|+.+..++. .|+.+ ..|+.+ | T Consensus 273 APeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGe-----vrddrk~msMlEDyWLPRReGgrg-TEItTL-p 345 (564) T protein:vir:10 273 APERRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDGQTGE-----IRDDKKHMSMLEDFWLPRREGGRG-TEITTL-P 345 (564) T ss_pred cccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCce-----ecccchhhhhHhhhcccccCCCcc-cceeec-c Confidence 55677763 11111110 0111111 133445555443332 12222 223322 3 Q ss_pred cccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 351 DFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE---VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGG 427 (518) Q Consensus 351 ~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~---~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~ 427 (518) ...--.-+..+..+.+.+....+.+.+-+..+++. .-++||.+..-+-...+.+.|..+..-+.++++.=|-|-.-. T Consensus 346 GgqnLgem~DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgii 425 (564) T protein:vir:10 346 GGQNLGELKDVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKSTEILRDELKFTKFIGRLRKRFAQLFHDILKTQLILKGII 425 (564) T ss_pred ccCCcchHHHHHHHHHHHHHHhCCCcccccCCCceeecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC Confidence 33333345566777788888888888777665321 135666666555555666666666666666665544331100 Q ss_pred hccccCCCcCCceeeEEEeCCCCCCCHHHHHHH-------HHHH--HhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHh Q lcl|Aclame:pro 428 TNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST-------LNNM--NSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLE 498 (518) Q Consensus 428 ~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~-------~~~~--~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E 498 (518) .. .-...-...|.++|...-.-.+...++. ++.+ .-+...|.++..+.. -.+||+|.++|-+.|++| T Consensus 426 -t~--eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~I-Lr~tDeei~~~~kqI~~E 501 (564) T protein:vir:10 426 -TP--EDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGKYFSTEYIRRKI-LMQTENEFKEIDKQMKSD 501 (564) T ss_pred -CH--HHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH-hccCHHHHHHHHHHHHHH Confidence 00 0000011346677763333233222222 2222 122356988877665 358999999999999999 Q ss_pred ccccCCCCchhccCc---CCCCC Q lcl|Aclame:pro 499 NAIGEVPDPEAIGGM---ETKGG 518 (518) Q Consensus 499 ~~~~~~~dp~~~~~~---~~~gG 518 (518) .....-++|....+. ...|| T Consensus 502 ~k~~~~~~P~e~~~~~~~~~~~~ 524 (564) T protein:vir:10 502 IESGLAIDPIQVNMLDDMEKQNQ 524 (564) T ss_pred hhcCCCCCchhhhcCCCccCCCC Confidence 887766777433332 12222 No 219 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=93.90 E-value=0.006 Score=32.76 Aligned_cols=341 Identities=11% Similarity=0.055 Sum_probs=139.9 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHH--HHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGN--EIVVVAAE 78 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~--~i~~~~A~ 78 (518) ||+++...+.- .+.|+. |....... ..|.. ......+ ..+..+. ..++.+|+ T Consensus 1 M~~~~~f~~r~----~~~~~~--------~~~~~~~~-----------~~~~~--~~~v~~~-~al~~~av~~cv~~ia~ 54 (359) T protein:vir:10 1 MSILNPFERRS----SITPNN--------YYPFMVQN-----------GSIVP--NSLVDAT-EALKNSDLYAVTSLISS 54 (359) T ss_pred Ccccchhhccc----cCCCCc--------chhhhhcc-----------ccccC--CcccCHH-HhhcchHHHHHHHHHHH Confidence 99998654321 112211 00000000 00000 0000000 0122232 24555555 Q ss_pred HHcCCcceEEeccccccchHHHHHHHHHHHhhcC---hHHHHHHHHH-HHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeE Q lcl|Aclame:pro 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRIDN---FDSKSVKIVE-LAGGSGVSAVKINIL-NGRP-SISVHSSSQFW 152 (518) Q Consensus 79 ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~---f~~~~~~~~e-~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~ 152 (518) -|-+-|. . ++..... ++..-+ -...|.+.+. ..+-.|.+++.+..+ +|++ .+..++++.+- T Consensus 55 ~ia~~p~--~-------~~~~~~~----L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~ 121 (359) T protein:vir:10 55 DIAGTRF--I-------GNQVFTS----VLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAIT 121 (359) T ss_pred hhhcCcc--c-------cchHHHH----HhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEE Confidence 5544332 1 1222222 222211 1112333333 344447776665443 4543 35555666555 Q ss_pred EEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccc Q lcl|Aclame:pro 153 IDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTN 232 (518) Q Consensus 153 P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~ 232 (518) +...++. .+|+. +...++.... + T Consensus 122 i~~~~~~----------------~~y~~-------------------------~~~~~~~~~~---------~------- 144 (359) T protein:vir:10 122 IDLTDDT----------------LTYEV-------------------------NQFDDYPSAK---------Y------- 144 (359) T ss_pred EEEcCCe----------------EEEEE-------------------------EecCCceEEE---------E------- Confidence 4322221 11110 0000000000 0 Q ss_pred cCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeee--chhhhccC Q lcl|Aclame:pro 233 DIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAA--SERMFRKK 309 (518) Q Consensus 233 ~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v--~~~~l~~~ 309 (518) ... -+.|++....|....+.-.|.|.+.-+...+.....+-.-...-|+.|.. .-++ |...+... T Consensus 145 --~~~----------evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e 212 (359) T protein:vir:10 145 --NAS----------EMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSE 212 (359) T ss_pred --ccc----------ceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHH Confidence 000 02234432222111122359998888888777666555555556676553 3222 22211110 Q ss_pred CCCCccccccCCCcchhheeeecCCcCCC----CCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCC-c Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAG----AKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGN-R 384 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~~----~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~-~ 384 (518) . . +.-++.+....+....+ -+++..++.++....+.++++..+...+.|....|++|..++..+ . T Consensus 213 ~-----~-----~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~ 282 (359) T protein:vir:10 213 A-----K-----DSIRKEFEKANGGNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQ 282 (359) T ss_pred H-----H-----HHHHHHHHHHhCccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcc Confidence 0 0 00011111111111000 022234666666777888999999999999999999999997532 2 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 385 EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNM 464 (518) Q Consensus 385 ~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~ 464 (518) ..|...++... ...+......|...|...+..- +.++.+..+..|.+.......++ T Consensus 283 ~~~~~~~e~~~---~~~l~~~l~p~~~~l~~~l~~~---------------------~~~~~~~~~~~d~~~~~~~~~~~ 338 (359) T protein:vir:10 283 QSSLDQIKDLY---VNALNRFIEPLISELRIKCDSS---------------------IGVDMSPITDYSNSVFKADILNW 338 (359) T ss_pred cccHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhh---------------------hcccchhhhhcCHHHHHHHHHHH Confidence 23444442222 1222222222222222211100 11122222333444555666778 Q ss_pred HhCCCCCHHHHHHHHc--CCC Q lcl|Aclame:pro 465 NSALAMSVEEKVKLIH--PKW 483 (518) Q Consensus 465 ~~aG~~S~~~~v~~~~--~~~ 483 (518) +.+|+|++-++.+.+. |-+ T Consensus 339 ~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 339 VKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HhCCCcCHHHHHHHhCCCCCC Confidence 8888888887766552 112 No 220 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=93.64 E-value=0.0069 Score=32.44 Aligned_cols=439 Identities=12% Similarity=0.001 Sum_probs=164.6 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |-=-|++..-+ |-..-. ..++.+...+..+....++..+-.....|=.. .......++-=+.+...++.+|+-| T Consensus 1 ~~~~~~~~~~~--~~~~l~--~r~~~L~~~R~~~e~~w~e~a~~~lP~~~~~~--~~~~~~~~~~dstg~~a~~~LAa~l 74 (516) T protein:vir:96 1 MKQSIDLEYGG--KRSKIP--KLWEKFSNKRSSFLDRAKHYSKLTLPYLMNDK--GDNETSQNGWQGVGAQATNHLANKL 74 (516) T ss_pred Ccchhhhhhhh--hHHHHH--HHHHHHHHHhhHHHHHHHHHHHhhcccccCCC--CCccccCCcccchHHHHHHHHHHHH Confidence 33333332222 211000 01122222222222222222222222211000 1111111221223566666666665 Q ss_pred cCCc-----ceEEeccccc---------cchHHH-------HHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECC Q lcl|Aclame:pro 81 SGKP-----LSIDVTGVNG---------SKDENL-------TKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG 139 (518) Q Consensus 81 ~~e~-----~~i~v~~~~~---------~~d~~~-------~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~ 139 (518) .+-. +=+.+...+. .+...+ ...+...+..++|+..+.++.....+.|.+++- .+.+ T Consensus 75 ~~~ltpp~~~WF~L~~~~~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~--~d~~ 152 (516) T protein:vir:96 75 AQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCMLY--KPSK 152 (516) T ss_pred HhhhcCCCCcccccccChhHHhhccccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeEE--ecCC Confidence 5542 2233332221 011112 334556778899999999999999999998754 3432 Q ss_pred eEEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEe----------------------cCceEEEEEEEEeecccceeeeeec Q lcl|Aclame:pro 140 RPSISVHSSSQFWIDFK-NNEPFRFNFFEEIPT----------------------SNKADIYYLVESREIKQWDKEGKKL 196 (518) Q Consensus 140 ~i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~----------------------~~~~~~y~~lE~he~~~~~~~~~~~ 196 (518) ..+..++-..|+-.-+ +|++..+++-..+.. .+.-.+|++.+++. T Consensus 153 -~~~~~~pl~~y~v~~d~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~----------- 220 (516) T protein:vir:96 153 -GAISAIPMHHYVVNRDTNGDLLDIILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVKLYTHAKYLG----------- 220 (516) T ss_pred -CCEEEEEcCeEEEeeCCCCCeeeehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEeeeeeC----------- Confidence 2345556566555433 466655443221110 00111222222211 Q ss_pred cceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCC---CcceEEEecCcccCccccCCCCCcchhhh Q lcl|Aclame:pro 197 SGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGL---KSMGAYLINNSPSNTRYPHLNLGESDLSQ 273 (518) Q Consensus 197 ~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~---~~~~~~~~~n~~~N~~~~~sPlG~S~~~~ 273 (518) +.+ +.+|..-++.. +.. ..+. ..|+++.--+ ...++.||+|--.. T Consensus 221 ~~~---~~~~~~~d~~~--------------------~~~----es~~~~~e~P~~~~Rw~-----~~~ge~YGrgp~~~ 268 (516) T protein:vir:96 221 DGF---WELKQSADDIP--------------------VGK----VSKIKSEKLPFIPLTWK-----RSYGEDWGRPLAED 268 (516) T ss_pred Cce---eEEEEEeCcee--------------------ecc----ccccccccCCeeeeeee-----ecCCCCcccchHHH Confidence 000 01111111100 000 1111 1233322212 23467889999999 Q ss_pred hHHHHHHHHHHHHHHHHHH-Hhccceeeechhhh-ccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccc Q lcl|Aclame:pro 274 CTNYLFAVDYFFTVYMREG-EKTKTKIAASERMF-RKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD 351 (518) Q Consensus 274 ~~~~i~~lD~~~s~~~~e~-~~g~~ri~v~~~~l-~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (518) +.+-++.|+..--....-. ...+....||++.+ +...- .+.....+. .|..+...+-.+.+. T Consensus 269 ~L~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~~~l---------~~~~~g~i~-------~g~~~~v~~~q~~~~ 332 (516) T protein:vir:96 269 YSGDLFVIQFLSEAVARGAALMADIKYLIRPGAQTDVDHF---------VNSGTGEVV-------TGVEEDIHIVQLGKY 332 (516) T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccccCcccccchhhh---------ccCCCceee-------cCCcccceeeecCcc Confidence 9999999986554444433 34556656644332 21110 011111111 111111111112232 Q ss_pred ccHHHHHHHHHHHHHHHHHHhCCCcccccc-CCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 352 FRDGSYRETMEYFAQKAVSKSGYNPATFNL-GNREVKATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGGTN 429 (518) Q Consensus 352 ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~-d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~~~ 429 (518) .....-...|+.+-+.|.... + ...+.. ++..+|||||..+.+...+...-.-..+.. .|..++.-++... T Consensus 333 ~d~~~~~~~i~~~~~rI~~af-~-~~~l~~r~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~l~~~----- 405 (516) T protein:vir:96 333 ADLTPISAVLEVYTRRIGVVF-M-METMTRRDAERVTAVEIQRDALEIEQNMGGVYSLFATTMQSPVAMWGLLEA----- 405 (516) T ss_pred cchhHHHHHHHHHHHHHHHHH-h-hhhhccCCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc----- Confidence 233334444555544443332 1 111222 445589999988877766555443333322 2333333332221 Q ss_pred cccCCCcCCceeeEEEeCCCCCC-----CHHHHHHHHHHHH-hCCC-------CCHHHHHHHH---c---CC--CCHHHH Q lcl|Aclame:pro 430 NKEKAIMRDEIRVIIEFPDPMSV-----NLNELSSTLNNMN-SALA-------MSVEEKVKLI---H---PK--WEDEEI 488 (518) Q Consensus 430 ~~~~~~~~~~~~v~v~f~D~i~~-----d~~~~~~~~~~~~-~aG~-------~S~~~~v~~~---~---~~--~~eeea 488 (518) ++..++..+.++.--++.. +.+...+.++.+- .+++ +-...+++.+ . +. -++||+ T Consensus 406 ----~p~lp~~~v~~~~vs~l~~l~r~~~~~~i~~~~~~i~~~~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~irs~eev 481 (516) T protein:vir:96 406 ----GESFTSDLVDPVIITGIEALGRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEM 481 (516) T ss_pred ----CCCCccccccceeechHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHhCCCccccCCHHHH Confidence 1222233344333222211 0111111111110 0111 1233333332 0 00 244555 Q ss_pred HHHHHHHHHhccccCCCCchhc--cCcCCCCC Q lcl|Aclame:pro 489 QAEVKRIYLENAIGEVPDPEAI--GGMETKGG 518 (518) Q Consensus 489 ~eev~rI~~E~~~~~~~dp~~~--~~~~~~gG 518 (518) +++.+.-.+-|+..+...+-.- .+.-...+ T Consensus 482 ~~~~~~~~~~q~~~~~a~~~~~~~~~~~~~~~ 513 (516) T protein:vir:96 482 AQEQEAQMQAQQAQMLEEGVAKAVPGVIQQEL 513 (516) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHhhccc Confidence 4443332222221111111000 00001111 No 221 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=93.59 E-value=0.007 Score=32.38 Aligned_cols=427 Identities=13% Similarity=0.077 Sum_probs=157.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHH---------hhc--cchhhhhh-hhhhhhhhhccCCCCcc---ccceec Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYL---------PLV--PDNQKEWS-KDSYLTSLWAQGYVPTV---HDKLMN 65 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~---------~~~--~~~~~~~~-~~~~~~~~w~~~~~~~~---~~~~~~ 65 (518) .-|--++.-+|+.= +-+| ...+.+.+-. +.. .+...++. +..+. .++... -+..-. T Consensus 23 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~ 93 (563) T protein:vir:99 23 VPIDEGLQANIKKI-EQDN--KEYQDLTKSLYGQQQAYAEPFIEMMDTNPEFRDKRSYM------KNEHNLHDVLKKFGN 93 (563) T ss_pred eeccCChhhhHhhh-hccc--hhHHHHHhhhccCCCcchhhhHhhhcccccccccccCC------CCcccHHHHHHHhhc Confidence 22222222222110 0011 1111221110 000 01101110 00000 000000 011111 Q ss_pred CchHHHHHHHHHHHHcCCcc-----------eEEeccccc-cc--hHHHHHHHHHHHh----h-----cChHHHHHHHHH Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPL-----------SIDVTGVNG-SK--DENLTKQLKEALR----I-----DNFDSKSVKIVE 122 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~-----------~i~v~~~~~-~~--d~~~~~~l~~vl~----d-----n~f~~~~~~~~e 122 (518) .++...+++..|+.+..-.| .|.+-..+. .. +......+...+. + ..|...++..+. T Consensus 94 n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~ 173 (563) T protein:vir:99 94 NPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVR 173 (563) T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHH Confidence 23444444444444332111 122111111 01 1111122333332 1 124455666777 Q ss_pred HHHhhCCEEEEEEEE-C--CeE-EEEEEcCCeeEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeecc Q lcl|Aclame:pro 123 LAGGSGVSAVKINIL-N--GRP-SISVHSSSQFWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLS 197 (518) Q Consensus 123 ~~~a~G~~~~k~~~d-~--~~i-~i~~v~ad~~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~ 197 (518) ..+..|.+++-+.+. + |++ .+..++|..+-+.-.+ |.. |+.. T Consensus 174 ~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~-----------------~~~~---------------- 220 (563) T protein:vir:99 174 DTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKI-----------------IKGG---------------- 220 (563) T ss_pred HHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCce-----------------eccc---------------- Confidence 888889888876654 2 443 4666777777665322 211 1000 Q ss_pred ceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHH Q lcl|Aclame:pro 198 GGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNY 277 (518) Q Consensus 198 ~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~ 277 (518) +.+..+. .+.... .+ .-.. .+++++++..+ ....++|+|.+..+... T Consensus 221 ---~~y~~~~-~g~~~~------------~~-------------~~~e--vI~~~~~~~~d--~~~~~~G~Spi~~a~~~ 267 (563) T protein:vir:99 221 ---KRFVQVV-DKRVVA------------SF-------------TSRE--LAMGIRNPRTE--LSSSGYGLSEVEIAMKE 267 (563) T ss_pred ---eeEEEEe-CCceeE------------Ee-------------cCcc--eEEEeccCCCC--cccCcccchHHHHHHHH Confidence 0000000 000000 00 0000 12334443221 12246799999988888 Q ss_pred HHHHHHHHHHHHHHHHhcc-ceee--echhh-hccCCCCCccccccCCCcchhheeeecCCc--CCCCCCCccceEeccc Q lcl|Aclame:pro 278 LFAVDYFFTVYMREGEKTK-TKIA--ASERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTL--DAGAKLNDMIQFMQGD 351 (518) Q Consensus 278 i~~lD~~~s~~~~e~~~g~-~ri~--v~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~ 351 (518) |.....+-.-..+-|+.|. ++-+ ++... +.. ...... ...-...|.+..... -.-.+++..++.++.+ T Consensus 268 i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~-----e~~~~~-~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~ 341 (563) T protein:vir:99 268 FIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQ-----HALENF-KREWKSSLSGINGSWQIPVVMADDIKFVNMTPT 341 (563) T ss_pred HHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCH-----HHHHHH-HHHHHHHhccccccccceEEcCCCceEEeccCC Confidence 8655554444445566654 3322 22111 000 000000 000001121110000 0001122346677777 Q ss_pred ccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 352 FRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V-KATEIWSLQDATVRKI-EKKKRLIQNVYEQMLWDFLYLLTGGT 428 (518) Q Consensus 352 ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~-TAtEi~s~~~~t~~t~-~~~~~~~~~~l~~li~~il~l~~~~~ 428 (518) ..+.++++..+...+.|....|++|..+|+..++ . ++.+-.+-+ ++++ ......++.+|..++..+-....... T Consensus 342 ~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~---~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L 418 (563) T protein:vir:99 342 ANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLN---EADPGKKQQQSQNKGLQPLLRFIEDLVNRHI 418 (563) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchh---hccHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 7889999999999999999999999999874322 1 111110001 1111 11122334444444444333322211 Q ss_pred ccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCC-CCH-H-------------------- Q lcl|Aclame:pro 429 NNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPK-WED-E-------------------- 486 (518) Q Consensus 429 ~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~-~~e-e-------------------- 486 (518) .. .....+.++|..+-..+..+..+ ..+++.+|+|+.-++.+++... ... + T Consensus 419 ~~------~~~~~~~~~f~r~D~~~~~e~~~-~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~ 491 (563) T protein:vir:99 419 IS------EYGDKYTFQFVGGDTKSATDKLN-ILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQY 491 (563) T ss_pred ch------hcccccEEEeccCCHHHHHHHHH-HHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCC Confidence 11 11224566776543333333322 3346788999999977665211 110 0 Q ss_pred --HHHHH-HHHHHH-hcccc--CCCCch-hccCcCCCCC Q lcl|Aclame:pro 487 --EIQAE-VKRIYL-ENAIG--EVPDPE-AIGGMETKGG 518 (518) Q Consensus 487 --ea~ee-v~rI~~-E~~~~--~~~dp~-~~~~~~~~gG 518 (518) +.++. ...++. .+... .++++. ....-+.+.| T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (563) T protein:vir:99 492 NDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIG 530 (563) T ss_pred CccccchhhhhcccccCCCCCCCCCCCCCCCCCCccccc Confidence 00000 000000 00000 001111 0011112222 No 222 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=93.59 E-value=0.007 Score=32.38 Aligned_cols=427 Identities=13% Similarity=0.077 Sum_probs=157.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHH---------hhc--cchhhhhh-hhhhhhhhhccCCCCcc---ccceec Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYL---------PLV--PDNQKEWS-KDSYLTSLWAQGYVPTV---HDKLMN 65 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~---------~~~--~~~~~~~~-~~~~~~~~w~~~~~~~~---~~~~~~ 65 (518) .-|--++.-+|+.= +-+| ...+.+.+-. +.. .+...++. +..+. .++... -+..-. T Consensus 23 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~~~~~ 93 (563) T protein:vir:95 23 VPIDEGLQANIKKI-EQDN--KEYQDLTKSLYGQQQAYAEPFIEMMDTNPEFRDKRSYM------KNEHNLHDVLKKFGN 93 (563) T ss_pred eeccCChhhhHhhh-hccc--hhHHHHHhhhccCCCcchhhhHhhhcccccccccccCC------CCcccHHHHHHHhhc Confidence 22222222222110 0011 1111221110 000 01101110 00000 000000 011111 Q ss_pred CchHHHHHHHHHHHHcCCcc-----------eEEeccccc-cc--hHHHHHHHHHHHh----h-----cChHHHHHHHHH Q lcl|Aclame:pro 66 SGTGNEIVVVAAEYISGKPL-----------SIDVTGVNG-SK--DENLTKQLKEALR----I-----DNFDSKSVKIVE 122 (518) Q Consensus 66 ~~l~~~i~~~~A~ll~~e~~-----------~i~v~~~~~-~~--d~~~~~~l~~vl~----d-----n~f~~~~~~~~e 122 (518) .++...+++..|+.+..-.| .|.+-..+. .. +......+...+. + ..|...++..+. T Consensus 94 n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~ 173 (563) T protein:vir:95 94 NPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVR 173 (563) T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHH Confidence 23444444444444332111 122111111 01 1111122333332 1 124455666777 Q ss_pred HHHhhCCEEEEEEEE-C--CeE-EEEEEcCCeeEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeecc Q lcl|Aclame:pro 123 LAGGSGVSAVKINIL-N--GRP-SISVHSSSQFWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLS 197 (518) Q Consensus 123 ~~~a~G~~~~k~~~d-~--~~i-~i~~v~ad~~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~ 197 (518) ..+..|.+++-+.+. + |++ .+..++|..+-+.-.+ |.. |+.. T Consensus 174 ~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~-----------------~~~~---------------- 220 (563) T protein:vir:95 174 DTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKGKI-----------------IKGG---------------- 220 (563) T ss_pred HHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCCce-----------------eccc---------------- Confidence 888889888876654 2 443 4666777777665322 211 1000 Q ss_pred ceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHH Q lcl|Aclame:pro 198 GGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNY 277 (518) Q Consensus 198 ~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~ 277 (518) +.+..+. .+.... .+ .-.. .+++++++..+ ....++|+|.+..+... T Consensus 221 ---~~y~~~~-~g~~~~------------~~-------------~~~e--vI~~~~~~~~d--~~~~~~G~Spi~~a~~~ 267 (563) T protein:vir:95 221 ---KRFVQVV-DKRVVA------------SF-------------TSRE--LAMGIRNPRTE--LSSSGYGLSEVEIAMKE 267 (563) T ss_pred ---eeEEEEe-CCceeE------------Ee-------------cCcc--eEEEeccCCCC--cccCcccchHHHHHHHH Confidence 0000000 000000 00 0000 12334443221 12246799999988888 Q ss_pred HHHHHHHHHHHHHHHHhcc-ceee--echhh-hccCCCCCccccccCCCcchhheeeecCCc--CCCCCCCccceEeccc Q lcl|Aclame:pro 278 LFAVDYFFTVYMREGEKTK-TKIA--ASERM-FRKKVNKSTDKEEWSMNVDEDYFMQFKGTL--DAGAKLNDMIQFMQGD 351 (518) Q Consensus 278 i~~lD~~~s~~~~e~~~g~-~ri~--v~~~~-l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~--~~~~~~~~~i~~~~~~ 351 (518) |.....+-.-..+-|+.|. ++-+ ++... +.. ...... ...-...|.+..... -.-.+++..++.++.+ T Consensus 268 i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~-----e~~~~~-~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~ 341 (563) T protein:vir:95 268 FIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQ-----HALENF-KREWKSSLSGINGSWQIPVVMADDIKFVNMTPT 341 (563) T ss_pred HHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCH-----HHHHHH-HHHHHHHhccccccccceEEcCCCceEEeccCC Confidence 8655554444445566654 3322 22111 000 000000 000001121110000 0001122346677777 Q ss_pred ccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 352 FRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V-KATEIWSLQDATVRKI-EKKKRLIQNVYEQMLWDFLYLLTGGT 428 (518) Q Consensus 352 ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~-TAtEi~s~~~~t~~t~-~~~~~~~~~~l~~li~~il~l~~~~~ 428 (518) ..+.++++..+...+.|....|++|..+|+..++ . ++.+-.+-+ ++++ ......++.+|..++..+-....... T Consensus 342 ~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~---~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L 418 (563) T protein:vir:95 342 ANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLN---EADPGKKQQQSQNKGLQPLLRFIEDLVNRHI 418 (563) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchh---hccHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 7889999999999999999999999999874322 1 111110001 1111 11122334444444444333322211 Q ss_pred ccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCC-CCH-H-------------------- Q lcl|Aclame:pro 429 NNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPK-WED-E-------------------- 486 (518) Q Consensus 429 ~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~-~~e-e-------------------- 486 (518) .. .....+.++|..+-..+..+..+ ..+++.+|+|+.-++.+++... ... + T Consensus 419 ~~------~~~~~~~~~f~r~D~~~~~e~~~-~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~ 491 (563) T protein:vir:95 419 IS------EYGDKYTFQFVGGDTKSATDKLN-ILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQY 491 (563) T ss_pred ch------hcccccEEEeccCCHHHHHHHHH-HHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCC Confidence 11 11224566776543333333322 3346788999999977665211 110 0 Q ss_pred --HHHHH-HHHHHH-hcccc--CCCCch-hccCcCCCCC Q lcl|Aclame:pro 487 --EIQAE-VKRIYL-ENAIG--EVPDPE-AIGGMETKGG 518 (518) Q Consensus 487 --ea~ee-v~rI~~-E~~~~--~~~dp~-~~~~~~~~gG 518 (518) +.++. ...++. .+... .++++. ....-+.+.| T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (563) T protein:vir:95 492 NDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIG 530 (563) T ss_pred CccccchhhhhcccccCCCCCCCCCCCCCCCCCCccccc Confidence 00000 000000 00000 001111 0011112222 No 223 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=92.78 E-value=0.01 Score=31.55 Aligned_cols=426 Identities=15% Similarity=0.122 Sum_probs=190.1 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) -|.+-...+. .|.-- .+.++|.+|+.+... ++. ..+..... -..-...... T Consensus 36 ~~~~~~~~~~-----e~~~~-~~~eLI~~YR~ma~~--pEv-d~Av~eIV-neaiv~d~~~------------------- 86 (533) T protein:vir:10 36 GGYYGYTVDF-----DGQVR-NEYQLISRYREMVLQ--PEC-DSAVDDIV-NETICGNFDD------------------- 86 (533) T ss_pred ccccceeeec-----ccccc-hHHHHHHHHHHHhhc--cch-hhHHHHhh-cceeeecCCC------------------- Confidence 0000000000 22211 255666666554321 111 00000000 0000011111 Q ss_pred cCCcceEEeccccc--cchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe-----EEEEEEcCCeeEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNG--SKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR-----PSISVHSSSQFWI 153 (518) Q Consensus 81 ~~e~~~i~v~~~~~--~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~-----i~i~~v~ad~~~P 153 (518) +|.++.++..+. +-.++..+.++.|+.--+|..+..+.+..+-+-|.++|...+|.++ ..+.+++|-++-+ T Consensus 87 --~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~ELr~lDPr~i~~ 164 (533) T protein:vir:10 87 --VPVSVELSNLKVSDKIKKLIREEFGEILRLLDFENRSYEIFRRWYVDGRLFYHKVIDPDNPQGGLIELRYIDPRKIRK 164 (533) T ss_pred --ceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCCCccccceeeeeccccceee Confidence 123333332211 1234566777888888889999999999999999999998887432 4567777766666 Q ss_pred EEEcCcEEEEEEEEEEE--ecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNNEPFRFNFFEEIP--TSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 154 ~~~~g~~~~~~f~~~~~--~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) .. ++. ..++.. +.... ... .++..+|-+|.-.+-...+.+... T Consensus 165 vr------------~i~~~~~~~~~-~~~~~----------~~v-~~~~~eyf~Ynp~g~~~~~~~~vk----------- 209 (533) T protein:vir:10 165 IN------------ETEQKRPEQLR-GLPLN----------QQL-SPKSAEYFLYDPKGLKNSTTQGLK----------- 209 (533) T ss_pred ee------------eeeccCCCccc-eeecc----------hhh-hccceeeeeeccccccccCCCcee----------- Confidence 42 111 111100 00000 000 112222333421110000000000 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH--HHHHHhccceeee-chhhhcc Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY--MREGEKTKTKIAA-SERMFRK 308 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~~l~~ 308 (518) ++. -.++|.- .+-.+.....=+|-+..|+-.+..|=-.-+.+ .|-.|+-++|||- +-.=|++ T Consensus 210 --I~~----------dAI~y~h---SGl~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk 274 (533) T protein:vir:10 210 --IAP----------DSICYVH---SGIMDLNKNMTLSHLHKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPK 274 (533) T ss_pred --cch----------hheeeee---ccceeCCCCceeccchHhHHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCc Confidence 000 0111111 11122222223466666666666553333332 2344555677763 1111111 Q ss_pred C------------------CCCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHHHHHHH Q lcl|Aclame:pro 309 K------------------VNKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETMEYFAQ 366 (518) Q Consensus 309 ~------------------~~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~ 366 (518) . -+..++ .-.+++.|+.+..++. .|+.+ ..|+.+ |...--.-...+..+.+ T Consensus 275 ~KAeqYlr~iM~k~KNklVYDa~TG-----ev~ddrk~msMlEDyWLPRReGgrg-TEItTL-pGgqnLgem~DV~YF~k 347 (533) T protein:vir:10 275 NKAEQYLREVMGRYRNKLVYDANTG-----EIKDDKKFMSMLEDFWLPRREGGRG-TEITTL-PGGQNLGELEDVKYFQK 347 (533) T ss_pred hhHHHHHHHHHHhccceEEEeccCc-----eecccchhhhhHhhhcccccCCCCc-cceeec-cccCCcChHHHHHHHHH Confidence 0 011111 1133445555443332 12222 223322 23332334566677778 Q ss_pred HHHHHhCCCccccccCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEE Q lcl|Aclame:pro 367 KAVSKSGYNPATFNLGNR--EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVII 444 (518) Q Consensus 367 ~i~~~~G~s~~tf~~d~~--~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v 444 (518) .+....+.+.+-+..+++ ..-++||....-+-...+.+.|..+..-+.++++.=|-|-.-. .. .-...-...|.+ T Consensus 348 KLY~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgii-t~--eeW~~i~~~I~~ 424 (533) T protein:vir:10 348 KLYKSLNVPGSRLETETTFNVGRAAEITRDEVKFQKFVARLRKRFSELFTDLLKTQLVLKGVI-SI--EEWDQMKEHIQY 424 (533) T ss_pred HHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CH--HHHHHHhhcceE Confidence 888888888888765432 1245677666655555666666666666666665544331100 00 000001134667 Q ss_pred EeCCCCCCCHHHHHH-------HHHHH--HhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhc----- Q lcl|Aclame:pro 445 EFPDPMSVNLNELSS-------TLNNM--NSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAI----- 510 (518) Q Consensus 445 ~f~D~i~~d~~~~~~-------~~~~~--~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~----- 510 (518) +|...-.-.+...++ .++.+ .-+...|.++..+.. -.+||+|.++|-+.|++|....--++|..- T Consensus 425 ~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~I-Lr~tDeei~~~~kqI~~E~k~~~~~~p~~~~~~~~ 503 (533) T protein:vir:10 425 DYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQV-LKQTDVEMKEIDKQIESEMESGIIADPAAEMDPAM 503 (533) T ss_pred eeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH-hccCHHHHHHHHHHHHHHHhCCCCCCCcchhhHHh Confidence 776433323322222 22222 122356988877665 368999999999999999877655555321 Q ss_pred cCcCCC-CC Q lcl|Aclame:pro 511 GGMETK-GG 518 (518) Q Consensus 511 ~~~~~~-gG 518 (518) +++.++ || T Consensus 504 ~~~~~~~~~ 512 (533) T protein:vir:10 504 AAGDPDAGG 512 (533) T ss_pred cCCCCCcCC Confidence 333322 22 No 224 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=92.41 E-value=0.011 Score=31.22 Aligned_cols=378 Identities=10% Similarity=-0.020 Sum_probs=126.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+...|-.. +..+ .... +.... ...+. ...+....-..+++.+|+-+ T Consensus 1 Mg~f~~lf~~-----~~~~-----~~~~--------~~~~~----------~~v~~----~~~~~~~~v~~~i~~Ia~~i 48 (395) T protein:vir:95 1 MSILEKIFKT-----RKDI-----TYML--------DLDMI----------EDLSQ----QAYVKRLAIDSCIEFVARAV 48 (395) T ss_pred Cchhhhhhcc-----Cccc-----cccc--------cchhc----------cccch----hhhhhhHHHHHHHHHHHHhh Confidence 8885544221 0000 0000 00000 00000 00111112233344444444 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcCcE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNEP 160 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~~ 160 (518) ..-|. .+-..+...+..+...|..--...--...+.+.+...+.+||.++....+++.+.+ ..+-..-|....... T Consensus 49 A~~p~--~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 124 (395) T protein:vir:95 49 AQSHF--KVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKELLI--ADSFYREEYALYDDI 124 (395) T ss_pred cccee--EeccCCccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCCeEe--cCCccceeEeecCcc Confidence 33332 22221111122222222210111111223445555666777777754433332211 000000000000000 Q ss_pred EEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccccee Q lcl|Aclame:pro 161 FRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSV 240 (518) Q Consensus 161 ~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (518) ... ++.. .|.+... | ....++ T Consensus 125 ~~~--------------~~~~----------------~~~~~~~-~----------------------------~~~evi 145 (395) T protein:vir:95 125 FKD--------------VTVK----------------DYTYQRT-F----------------------------TMQEVI 145 (395) T ss_pred eeE--------------EEEc----------------Cceeeee-e----------------------------ccccEE Confidence 000 0000 0000000 0 000001 Q ss_pred ecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceee--echhhhccCCCCCccccc Q lcl|Aclame:pro 241 SIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIA--ASERMFRKKVNKSTDKEE 318 (518) Q Consensus 241 ~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~--v~~~~l~~~~~~~~~~~~ 318 (518) . +-+.. ..+.. +|.|.+..+..+++..... +. +.+..+-+ ++...+... .... T Consensus 146 h-------~~~~~--~~~~~-----~G~spi~~~~~~~~~~~~~---~~---~~~~~~gii~~~~~~~~~e-----~~~~ 200 (395) T protein:vir:95 146 Y-------LKYNN--NKVTH-----FVESLFEDYGKIFGRMIGA---QL---KNYQIRGILKSASSAYDEK-----NIEK 200 (395) T ss_pred E-------EccCC--CCccc-----ccchHHHHHHHHHHHHHHH---HH---hcCCCceEEEeCCCCCCHH-----HHHH Confidence 0 00101 11211 2555554444444332221 11 22322222 222211100 0000 Q ss_pred cCCCcchhheeeecCCcCCC--CCCCccceEec--c---cccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHH Q lcl|Aclame:pro 319 WSMNVDEDYFMQFKGTLDAG--AKLNDMIQFMQ--G---DFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEI 391 (518) Q Consensus 319 ~~~d~d~~~~~~~~~~~~~~--~~~~~~i~~~~--~---~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi 391 (518) . -..-++.+...+.....- .+++..++.++ | +....++.+..+...+.|....|++|..++-+.. ++.+ T Consensus 201 ~-~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~s--n~e~- 276 (395) T protein:vir:95 201 L-QAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETA--DLEK- 276 (395) T ss_pred H-HHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCccc--CHHH- Confidence 0 000001111110000000 00111122222 1 2345578888888889999999999998862211 1111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMS 471 (518) Q Consensus 392 ~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S 471 (518) ..... ++.+|..++..+-....... +.. ......+.+++...+..|.+++++.+.+++.+|+|+ T Consensus 277 --~~~~~----------~~~~l~P~~~~ie~~l~~kL---~~~-~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt 340 (395) T protein:vir:95 277 --NTLVF----------EKFCLTPLLKKIQNELNAKL---ITQ-SMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFT 340 (395) T ss_pred --HHHHH----------HHHHHHHHHHHHHHHHHHhh---cCh-hhhcccceecchhhhccCHHHHHHHHHHHHhCCCcC Confidence 11111 22223333332222211111 010 001112456777778889999999999999999999 Q ss_pred HHHHHHHHc-CCCCHHHHHHHH-----HHHHH-hccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 472 VEEKVKLIH-PKWEDEEIQAEV-----KRIYL-ENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 472 ~~~~v~~~~-~~~~eeea~eev-----~rI~~-E~~~~~~~dp~~~~~~~~~gG 518 (518) .-++.+++. |-.++.+.++-+ ..+.. ++......+...-|+-+...| T Consensus 341 ~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g 394 (395) T protein:vir:95 341 RNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESG 394 (395) T ss_pred HHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCC Confidence 999887762 223222221111 11110 000000001111122222223 No 225 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=92.41 E-value=0.011 Score=31.22 Aligned_cols=378 Identities=10% Similarity=-0.020 Sum_probs=126.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+...|-.. +..+ .... +.... ...+. ...+....-..+++.+|+-+ T Consensus 1 Mg~f~~lf~~-----~~~~-----~~~~--------~~~~~----------~~v~~----~~~~~~~~v~~~i~~Ia~~i 48 (395) T protein:vir:10 1 MSILEKIFKT-----RKDI-----TYML--------DLDMI----------EDLSQ----QAYVKRLAIDSCIEFVARAV 48 (395) T ss_pred Cchhhhhhcc-----Cccc-----cccc--------cchhc----------cccch----hhhhhhHHHHHHHHHHHHhh Confidence 8885544221 0000 0000 00000 00000 00111112233344444444 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcCcE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNEP 160 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~~ 160 (518) ..-|. .+-..+...+..+...|..--...--...+.+.+...+.+||.++....+++.+.+ ..+-..-|....... T Consensus 49 A~~p~--~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 124 (395) T protein:vir:10 49 AQSHF--KVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKELLI--ADSFYREEYALYDDI 124 (395) T ss_pred cccee--EeccCCccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCCeEe--cCCccceeEeecCcc Confidence 33332 22221111122222222210111111223445555666777777754433332211 000000000000000 Q ss_pred EEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccccee Q lcl|Aclame:pro 161 FRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSV 240 (518) Q Consensus 161 ~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (518) ... ++.. .|.+... | ....++ T Consensus 125 ~~~--------------~~~~----------------~~~~~~~-~----------------------------~~~evi 145 (395) T protein:vir:10 125 FKD--------------VTVK----------------DYTYQRT-F----------------------------TMQEVI 145 (395) T ss_pred eeE--------------EEEc----------------Cceeeee-e----------------------------ccccEE Confidence 000 0000 0000000 0 000001 Q ss_pred ecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceee--echhhhccCCCCCccccc Q lcl|Aclame:pro 241 SIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIA--ASERMFRKKVNKSTDKEE 318 (518) Q Consensus 241 ~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~--v~~~~l~~~~~~~~~~~~ 318 (518) . +-+.. ..+.. +|.|.+..+..+++..... +. +.+..+-+ ++...+... .... T Consensus 146 h-------~~~~~--~~~~~-----~G~spi~~~~~~~~~~~~~---~~---~~~~~~gii~~~~~~~~~e-----~~~~ 200 (395) T protein:vir:10 146 Y-------LKYNN--NKVTH-----FVESLFEDYGKIFGRMIGA---QL---KNYQIRGILKSASSAYDEK-----NIEK 200 (395) T ss_pred E-------EccCC--CCccc-----ccchHHHHHHHHHHHHHHH---HH---hcCCCceEEEeCCCCCCHH-----HHHH Confidence 0 00101 11211 2555554444444332221 11 22322222 222211100 0000 Q ss_pred cCCCcchhheeeecCCcCCC--CCCCccceEec--c---cccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHH Q lcl|Aclame:pro 319 WSMNVDEDYFMQFKGTLDAG--AKLNDMIQFMQ--G---DFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEI 391 (518) Q Consensus 319 ~~~d~d~~~~~~~~~~~~~~--~~~~~~i~~~~--~---~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi 391 (518) . -..-++.+...+.....- .+++..++.++ | +....++.+..+...+.|....|++|..++-+.. ++.+ T Consensus 201 ~-~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~s--n~e~- 276 (395) T protein:vir:10 201 L-QAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETA--DLEK- 276 (395) T ss_pred H-HHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCccc--CHHH- Confidence 0 000001111110000000 00111122222 1 2345578888888889999999999998862211 1111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMS 471 (518) Q Consensus 392 ~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S 471 (518) ..... ++.+|..++..+-....... +.. ......+.+++...+..|.+++++.+.+++.+|+|+ T Consensus 277 --~~~~~----------~~~~l~P~~~~ie~~l~~kL---~~~-~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt 340 (395) T protein:vir:10 277 --NTLVF----------EKFCLTPLLKKIQNELNAKL---ITQ-SMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFT 340 (395) T ss_pred --HHHHH----------HHHHHHHHHHHHHHHHHHhh---cCh-hhhcccceecchhhhccCHHHHHHHHHHHHhCCCcC Confidence 11111 22223333332222211111 010 001112456777778889999999999999999999 Q ss_pred HHHHHHHHc-CCCCHHHHHHHH-----HHHHH-hccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 472 VEEKVKLIH-PKWEDEEIQAEV-----KRIYL-ENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 472 ~~~~v~~~~-~~~~eeea~eev-----~rI~~-E~~~~~~~dp~~~~~~~~~gG 518 (518) .-++.+++. |-.++.+.++-+ ..+.. ++......+...-|+-+...| T Consensus 341 ~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g 394 (395) T protein:vir:10 341 RNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESG 394 (395) T ss_pred HHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCC Confidence 999887762 223222221111 11110 000000001111122222223 No 226 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=92.41 E-value=0.011 Score=31.22 Aligned_cols=378 Identities=10% Similarity=-0.020 Sum_probs=126.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+...|-.. +..+ .... +.... ...+. ...+....-..+++.+|+-+ T Consensus 1 Mg~f~~lf~~-----~~~~-----~~~~--------~~~~~----------~~v~~----~~~~~~~~v~~~i~~Ia~~i 48 (395) T protein:vir:10 1 MSILEKIFKT-----RKDI-----TYML--------DLDMI----------EDLSQ----QAYVKRLAIDSCIEFVARAV 48 (395) T ss_pred Cchhhhhhcc-----Cccc-----cccc--------cchhc----------cccch----hhhhhhHHHHHHHHHHHHhh Confidence 8885544221 0000 0000 00000 00000 00111112233344444444 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcCcE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNEP 160 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~~ 160 (518) ..-|. .+-..+...+..+...|..--...--...+.+.+...+.+||.++....+++.+.+ ..+-..-|....... T Consensus 49 A~~p~--~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 124 (395) T protein:vir:10 49 AQSHF--KVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKELLI--ADSFYREEYALYDDI 124 (395) T ss_pred cccee--EeccCCccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCCeEe--cCCccceeEeecCcc Confidence 33332 22221111122222222210111111223445555666777777754433332211 000000000000000 Q ss_pred EEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCccccee Q lcl|Aclame:pro 161 FRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSV 240 (518) Q Consensus 161 ~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (518) ... ++.. .|.+... | ....++ T Consensus 125 ~~~--------------~~~~----------------~~~~~~~-~----------------------------~~~evi 145 (395) T protein:vir:10 125 FKD--------------VTVK----------------DYTYQRT-F----------------------------TMQEVI 145 (395) T ss_pred eeE--------------EEEc----------------Cceeeee-e----------------------------ccccEE Confidence 000 0000 0000000 0 000001 Q ss_pred ecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceee--echhhhccCCCCCccccc Q lcl|Aclame:pro 241 SIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIA--ASERMFRKKVNKSTDKEE 318 (518) Q Consensus 241 ~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~--v~~~~l~~~~~~~~~~~~ 318 (518) . +-+.. ..+.. +|.|.+..+..+++..... +. +.+..+-+ ++...+... .... T Consensus 146 h-------~~~~~--~~~~~-----~G~spi~~~~~~~~~~~~~---~~---~~~~~~gii~~~~~~~~~e-----~~~~ 200 (395) T protein:vir:10 146 Y-------LKYNN--NKVTH-----FVESLFEDYGKIFGRMIGA---QL---KNYQIRGILKSASSAYDEK-----NIEK 200 (395) T ss_pred E-------EccCC--CCccc-----ccchHHHHHHHHHHHHHHH---HH---hcCCCceEEEeCCCCCCHH-----HHHH Confidence 0 00101 11211 2555554444444332221 11 22322222 222211100 0000 Q ss_pred cCCCcchhheeeecCCcCCC--CCCCccceEec--c---cccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHH Q lcl|Aclame:pro 319 WSMNVDEDYFMQFKGTLDAG--AKLNDMIQFMQ--G---DFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEI 391 (518) Q Consensus 319 ~~~d~d~~~~~~~~~~~~~~--~~~~~~i~~~~--~---~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi 391 (518) . -..-++.+...+.....- .+++..++.++ | +....++.+..+...+.|....|++|..++-+.. ++.+ T Consensus 201 ~-~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~s--n~e~- 276 (395) T protein:vir:10 201 L-QAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETA--DLEK- 276 (395) T ss_pred H-HHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCccc--CHHH- Confidence 0 000001111110000000 00111122222 1 2345578888888889999999999998862211 1111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMS 471 (518) Q Consensus 392 ~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S 471 (518) ..... ++.+|..++..+-....... +.. ......+.+++...+..|.+++++.+.+++.+|+|+ T Consensus 277 --~~~~~----------~~~~l~P~~~~ie~~l~~kL---~~~-~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt 340 (395) T protein:vir:10 277 --NTLVF----------EKFCLTPLLKKIQNELNAKL---ITQ-SMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFT 340 (395) T ss_pred --HHHHH----------HHHHHHHHHHHHHHHHHHhh---cCh-hhhcccceecchhhhccCHHHHHHHHHHHHhCCCcC Confidence 11111 22223333332222211111 010 001112456777778889999999999999999999 Q ss_pred HHHHHHHHc-CCCCHHHHHHHH-----HHHHH-hccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 472 VEEKVKLIH-PKWEDEEIQAEV-----KRIYL-ENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 472 ~~~~v~~~~-~~~~eeea~eev-----~rI~~-E~~~~~~~dp~~~~~~~~~gG 518 (518) .-++.+++. |-.++.+.++-+ ..+.. ++......+...-|+-+...| T Consensus 341 ~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g 394 (395) T protein:vir:10 341 RNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESG 394 (395) T ss_pred HHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCC Confidence 999887762 223222221111 11110 000000001111122222223 No 227 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=92.38 E-value=0.012 Score=31.19 Aligned_cols=458 Identities=8% Similarity=-0.024 Sum_probs=171.0 Q ss_pred chHHH------HHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHH Q lcl|Aclame:pro 5 SVMTR------FIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAE 78 (518) Q Consensus 5 ~~~~~------~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ 78 (518) |-=++ .+|.=| +.+...+..+....++..+-...+.+-........+..++-=+-+...++.+|+ T Consensus 1 m~~~~~~~~~~~~~~r~---------~~lk~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~dst~~~a~~~Laa 71 (536) T protein:vir:21 1 MAEKRTGLAEDGAKSVY---------ERLKNDRAPYETRAQNCAQYTIPSLFPKDSDNASTDYQTPWQAVGARGLNNLAS 71 (536) T ss_pred CcchhhchhHHHHHHHH---------HHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccccccHHHHHHHHHH Confidence 11111 111111 111111111222222222222222111111111122233434456677777776 Q ss_pred HHcCCc----ceEEeccccccc------h----------HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEEC Q lcl|Aclame:pro 79 YISGKP----LSIDVTGVNGSK------D----------ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN 138 (518) Q Consensus 79 ll~~e~----~~i~v~~~~~~~------d----------~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~ 138 (518) -|++-. +=+.+...+..- + +...+.+...+..++|+..+.+++....+.|.+++-.--+. T Consensus 72 ~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~e~~ 151 (536) T protein:vir:21 72 KLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLPEPE 151 (536) T ss_pred HHHHhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEeeCC Confidence 665542 222322221110 0 11234566778889999999999999999999886432222 Q ss_pred C--eEEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccc Q lcl|Aclame:pro 139 G--RPSISVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTP 215 (518) Q Consensus 139 ~--~i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~ 215 (518) + ...+..++-..|+-.-+ +|++..++.-.+++...-..-|- +........ ..-+..-.|-|.+|.-.+.... T Consensus 152 ~~~~~~f~~~pl~~~~v~~d~~G~vd~i~r~~~~t~~~l~~~fg--~~~~~~~~~--~~~~~~v~v~~~v~~~~~~~~~- 226 (536) T protein:vir:21 152 GSNYNPMKLYRLSSYVVQRDAFGNVLQMVTRDQIAFGALPEDIR--KAVEGQGGE--KKADETIDVYTHIYLDEDSGEY- 226 (536) T ss_pred CCceeeEEEEEcCeEEEeeCCCCCeeEEeeeeeccHHHHHHhhh--hhhcccccc--cccccceeEEEEEEEecCCCcE- Confidence 2 22356677677766533 46554443222111000000000 000000000 0000111222333332111000 Q ss_pred ccccccccccccccccccCccccee-ecC----CCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 216 ISAERLPEQITSYLHTNDIQLNHSV-SIG----LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMR 290 (518) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~-~tg----~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~ 290 (518) . . +..+....+. ..| ...|+++.-.+ ...++.||+|--..+.+-++.|+..--.... T Consensus 227 -------~---~---~~e~~g~~v~~~~g~~~f~~~P~i~~Rw~-----~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~ 288 (536) T protein:vir:21 227 -------L---R---YEEVEGMEVQGSDGTYPKEACPYIPIRMV-----RLDGESYGRSYIEEYLGDLRSLENLQEAIVK 288 (536) T ss_pred -------E---E---EeccCCeeeccccCccccccCCeeeeeee-----ecCCCccccchHHHHHHHHHHHHHHHHHHHH Confidence 0 0 0000000010 111 11233322222 2346778999999999999999876554444 Q ss_pred -HHHhccceeee-chhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 291 -EGEKTKTKIAA-SERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKA 368 (518) Q Consensus 291 -e~~~g~~ri~v-~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i 368 (518) .....+....| |..+.....- -+.....+.. +..+...+..+....+...-.+.|+.+-+.| T Consensus 289 ~~~~a~~~~~lv~p~g~~~~~~~---------~~~~~g~~v~-------g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI 352 (536) T protein:vir:21 289 MSMISSKVIGLVNPAGITQPRRL---------TKAQTGDFVT-------GRPEDISFLQLEKQADFTVAKAVSDAIEARL 352 (536) T ss_pred HHHHHhcCCcccCcccccchhhh---------ccCCCcceec-------CCcccceeeeccccccchHHHHHHHHHHHHH Confidence 33444444344 3333222110 0011111111 1111111222222222222334444444444 Q ss_pred HHHhCCCccccc-cCCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEe Q lcl|Aclame:pro 369 VSKSGYNPATFN-LGNREVKATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEF 446 (518) Q Consensus 369 ~~~~G~s~~tf~-~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f 446 (518) ....=+. .+. .++..+|||||..+.+...+...-.-..+.. .|..++.-++.+.... ......+. .-+.+++ T Consensus 353 ~~af~~~--~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~--g~lP~~p~--~~v~~~~ 426 (536) T protein:vir:21 353 SFAFMLN--SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQAT--QQIPELPK--EAVEPTI 426 (536) T ss_pred HHHHhhh--hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCh--hhccceE Confidence 3333111 122 2455689999988887776655544333333 3444555555554221 11122222 2234444 Q ss_pred CCCCCCCHHHHHHH-------HHHHHhCC------CCCHHHHHHHH---cC---C---CCHHHHHHHHHHHHHhccccCC Q lcl|Aclame:pro 447 PDPMSVNLNELSST-------LNNMNSAL------AMSVEEKVKLI---HP---K---WEDEEIQAEVKRIYLENAIGEV 504 (518) Q Consensus 447 ~D~i~~d~~~~~~~-------~~~~~~aG------~~S~~~~v~~~---~~---~---~~eeea~eev~rI~~E~~~~~~ 504 (518) --++. ...+.+. .+.+.+.+ .+....+++.+ ++ . -+++|++++.++-.+.++..+. T Consensus 427 vs~l~--~l~r~~~~~~l~~~~~~la~~~Pe~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~ 504 (536) T protein:vir:21 427 STGLE--AIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNG 504 (536) T ss_pred EecHH--HHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHH Confidence 32222 2111111 11111111 13344444443 21 0 1445554443321111111000 Q ss_pred C-------------CchhccCcCCCCC Q lcl|Aclame:pro 505 P-------------DPEAIGGMETKGG 518 (518) Q Consensus 505 ~-------------dp~~~~~~~~~gG 518 (518) . -|....+.-..+| T Consensus 505 a~~~~~~~~~~~~~~~~~~~~~~~~~g 531 (536) T protein:vir:21 505 AAALAQGMAAQATASPEAMAAAADSVG 531 (536) T ss_pred HHHHHHHHHHHHhcChhhHHhhhhccc Confidence 0 0111111111222 No 228 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=92.30 E-value=0.012 Score=31.12 Aligned_cols=425 Identities=11% Similarity=0.027 Sum_probs=189.6 Q ss_pred CCcCchHH-HHHHHHh--cCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMT-RFIKGWL--NGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~-~~~~~w~--~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) -|..+... -+.++.+ .|+-. .+.++|.+|+.+.. .++. +.+..... -..-..... T Consensus 43 ~~~~~~~~~g~~~~~~d~~~~~~-~~~~LI~~YR~ma~--~pEv-d~Av~eIv-neaiv~d~~----------------- 100 (516) T protein:vir:10 43 AREGESSYNALMQQFFGIDNNIS-GTKDLINTYRQLTN--NPEV-ERAVANIV-NEAVVYEKG----------------- 100 (516) T ss_pred cCcccccccceeeeeecccCccc-cHHHHHHHHHHhhh--ccch-hHHHHHhh-cceeEecCC----------------- Confidence 11111100 1111222 22221 34566666654331 1111 00000000 000000011 Q ss_pred HHHcCCcceEEecccc--ccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe---EEEEEEcCCeeE Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVN--GSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR---PSISVHSSSQFW 152 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~--~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~---i~i~~v~ad~~~ 152 (518) .+|.++.++..+ .+-.++..+..+.|+.--+|..+..+.+..+-+-|.++|.-+.|+++ ..+.+++|-++- T Consensus 101 ----~~pV~l~l~~~e~s~sik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k~GI~elr~lDPr~i~ 176 (516) T protein:vir:10 101 ----HKVVSLDLDDTEFSSSIKDKILEEFDEICRLLDASRKLDTLFRRWYIDSRIFFHKIMPNPKEGIVELRRLDPRHVE 176 (516) T ss_pred ----CceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhhhhcceEEEEEEecCcccceeeeeeeCCccee Confidence 122333333221 12234566777888888889999999999999999999998887532 457777777776 Q ss_pred EEEEcCcEEEEEEEEEEEecCc--eEEEE-EEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 153 IDFKNNEPFRFNFFEEIPTSNK--ADIYY-LVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 153 P~~~~g~~~~~~f~~~~~~~~~--~~~y~-~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) +... +.+.+. ..++. ..||. .|...+.-|.-++.-..+.+. + T Consensus 177 ~vR~------------i~~~~~~~~~v~~~~~e~~-------------~Y~~~~~~~~~~g~~~~~~~~---------i- 221 (516) T protein:vir:10 177 YYRE------------IVTSDVGGTSVVKGYREFF-------------VYTTGNEGYAYNGRLFEPNTR---------I- 221 (516) T ss_pred eEEe------------eecccCcchhhhhceeeee-------------eeecCccceeccccccCCCCc---------e- Confidence 6422 111110 00000 00110 011111111111110000000 0 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH--HHHHHhccceeee-chhhh Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY--MREGEKTKTKIAA-SERMF 306 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~~l 306 (518) -++.. .++|.- .+-.+.....=+|-+..|+-.+..|=-.-+.+ .|-.|+-++|||- +-.=| T Consensus 222 ---kI~~d----------aI~y~h---SGl~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnL 285 (516) T protein:vir:10 222 ---KIPRS----------AIVYAH---SGLQDCSDRGIVGYLHNAVKPANQLKLLEDALVIYRITRAPERRVFYIDVGNM 285 (516) T ss_pred ---ecchh----------heeeee---cCcccCCCCceeceehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCC Confidence 00000 111110 00011111111355556665555553333332 2444556677763 11111 Q ss_pred ccC------------------CCCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHHHHH Q lcl|Aclame:pro 307 RKK------------------VNKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETMEYF 364 (518) Q Consensus 307 ~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~~ 364 (518) ++. -+..++. -.+++.++.+..++. .|+.+ ..|+.+ |...--.-...+..+ T Consensus 286 Pk~KAeqYl~~iM~k~KNklvYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrg-TEItTL-pGgqnlgem~DV~YF 358 (516) T protein:vir:10 286 PNRKATEYVNGIMQSLKNRVVYDSNTGT-----VKNQKRNLSMTEDYWLMRRDGKSV-TEVTSL-PGAQTMGEMDDVRWF 358 (516) T ss_pred CchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhHhhhcccccCCCcc-cceeec-cccCCcChHHHHHHH Confidence 110 0111111 123344444433332 12222 223322 333333345667777 Q ss_pred HHHHHHHhCCCccccccCCc-c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCce Q lcl|Aclame:pro 365 AQKAVSKSGYNPATFNLGNR-E---VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEI 440 (518) Q Consensus 365 l~~i~~~~G~s~~tf~~d~~-~---~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~ 440 (518) .+.+....+.+.+-+..+++ . .-++||....-+-...+.+.|..+..-+.++++.=|-|-. .... .....-.. T Consensus 359 ~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lF~~~L~~qLilKg-Iit~--eeW~~i~~ 435 (516) T protein:vir:10 359 NKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDELDFRKFIVQLQHNFEEIFLDPLKTNLIYKK-IILE--SEWEEQIN 435 (516) T ss_pred HHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCH--HHHHHHhh Confidence 78888899998888865432 2 2457776665555556666666555555555554332211 0000 00000112 Q ss_pred eeEEEeCCCCCCCHHH-------HHHHHHHHH--hCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhcc Q lcl|Aclame:pro 441 RVIIEFPDPMSVNLNE-------LSSTLNNMN--SALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIG 511 (518) Q Consensus 441 ~v~v~f~D~i~~d~~~-------~~~~~~~~~--~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~ 511 (518) .|.++|...-.-.+.. ++..++.+. -++..|.++..+.. -..+|++..+|-+.|++|....--++|..-. T Consensus 436 ~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~~yi~k~I-Lr~tDeei~~~~k~I~~E~~~~~~~~p~~e~ 514 (516) T protein:vir:10 436 NIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGKYVSHDYVMKNI-LQMTDEQIAQEEKQIEKEANVKRFQNPENED 514 (516) T ss_pred cceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH-hcCCHhHHHHHHHHHHHhhhCCCCCCCCccc Confidence 4667776333222222 233333332 34678988877665 4689999999999999998776556666656 Q ss_pred Cc Q lcl|Aclame:pro 512 GM 513 (518) Q Consensus 512 ~~ 513 (518) .| T Consensus 515 ~f 516 (516) T protein:vir:10 515 DF 516 (516) T ss_pred cC Confidence 67 No 229 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=92.20 E-value=0.012 Score=31.04 Aligned_cols=410 Identities=10% Similarity=0.066 Sum_probs=152.4 Q ss_pred cCc---hHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccc--cceecCchHHHHHHHHH Q lcl|Aclame:pro 3 VWS---VMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVH--DKLMNSGTGNEIVVVAA 77 (518) Q Consensus 3 ~~~---~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~l~~~i~~~~A 77 (518) +.+ .|+... +| .-+.... ......... +... |..++..... +-..+.+....+++.+| T Consensus 1 ~~~~~~~i~s~~------~~-----~~i~~~~----~~s~~~~~~-~~~~-~~~pp~~~~~la~l~~~n~~v~scI~~ia 63 (542) T protein:vir:41 1 MFNYHLSIRSLE------KY-----KAIKREE----VESQALGET-RFEE-YVEPKVNPLVLLSLLQVNPYHASACSIKA 63 (542) T ss_pred Cccccccccccc------cc-----hhhhhcc----ccccccccc-cCCc-cccCCCCHHHHHHHHhhcHHHHHHHHHHH Confidence 111 111110 00 0110000 000000000 0001 1111111111 11113344556777777 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhhc--ChHHHHHHHHHHHHhhCCEEEEEEEEC-CeE-EEEEEcCCeeEE Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRID--NFDSKSVKIVELAGGSGVSAVKINILN-GRP-SISVHSSSQFWI 153 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn--~f~~~~~~~~e~~~a~G~~~~k~~~d~-~~i-~i~~v~ad~~~P 153 (518) +-+.+-+..+. .. +.. .+...+-+. .+...++..+...+..|.+++.+..+. |++ .+..+++..+-+ T Consensus 64 ~~IA~l~~~~~--~~---~~~----~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v 134 (542) T protein:vir:41 64 NDIIRTGYILE--GD---DEG----VVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRV 134 (542) T ss_pred HHHhhCceeee--cc---cch----hhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEE Confidence 77766554432 21 111 222322221 233344555667777799888776654 554 466677766655 Q ss_pred EEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 154 ~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) .- +++. |.. ...+.. .+|+ .-|..... +.... +... .. T Consensus 135 ~~-d~~~----~~~-~~~~~~-~~~~------------------------~~y~~~~~--~~~~~---g~~~------~~ 172 (542) T protein:vir:41 135 HK-DGSR----YRQ-TWDGVN-ITHF------------------------KDYRYEGE--INPET---GEDQ------DS 172 (542) T ss_pred EE-cCCe----eEe-eecCCc-ceeE------------------------Eeeccccc--ccccc---cccc------cc Confidence 42 2221 110 011111 1111 11111000 00000 0000 00 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHH-HHhccc-e--eeechhhhccC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMRE-GEKTKT-K--IAASERMFRKK 309 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e-~~~g~~-r--i~v~~~~l~~~ 309 (518) .+.--+.|+++.. ..+.++|+|.+..+...+... .+...+..- |+.|.. . +.++..+.+.. T Consensus 173 ----------~~~~eIiHir~~~----~~~~~~Glspi~~~~~~i~~~-~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~ 237 (542) T protein:vir:41 173 ----------VGANELVFIHIPS----PVCSYYGVPRYVSAAPAILAM-QKIDEYNYAFFDNYTIPSYVITVTGEFEDEL 237 (542) T ss_pred ----------cCcccEEEecCCC----CCCCcccccHHHHHHHHHHHH-HHHHHHHHHHHhccCCccEEEEeCCcccccc Confidence 0011134455432 123457999998888777543 444444443 565443 2 33333222111 Q ss_pred CCCCccccccCCCcc-------hhheeeecC--------CcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVD-------EDYFMQFKG--------TLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGY 374 (518) Q Consensus 310 ~~~~~~~~~~~~d~d-------~~~~~~~~~--------~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~ 374 (518) .... ....+.. ...|..... ....+.+++-.++.++....+.++.+..+...+.|....|+ T Consensus 238 ~~~~----~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgV 313 (542) T protein:vir:41 238 EEDP----DGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMI 313 (542) T ss_pred cccc----ccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCC Confidence 0000 0000000 000111000 00001122234555666677889999999999999999999 Q ss_pred CccccccCCcc-c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCC Q lcl|Aclame:pro 375 NPATFNLGNRE-V--KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMS 451 (518) Q Consensus 375 s~~tf~~d~~~-~--TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~ 451 (518) +|..+|+.+++ . +..|- .. ...++.+|..++..+-.......... ....+.+.++..+.+. T Consensus 314 Pp~~lG~~~~~t~n~sn~Eq--~~----------~~f~~~tL~P~~~~ie~~ln~~L~~~----~~~~~~~~f~~~~ll~ 377 (542) T protein:vir:41 314 DPYRLGIADTGPLGGNFAEV--TR----------RTYYESVVRPQQNIISSILTDFFQVK----FNPKTRFKFNDETLLE 377 (542) T ss_pred CHHHhCcCCCcccccccHHH--HH----------HHHHHHHHHHHHHHHHHHHHhhcccc----cCCceEEEecchhhcc Confidence 99999875322 1 11221 11 11122223333332222221111100 1112334444445454 Q ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHc--CCCCHHHH---HHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 452 VNLNELSSTLNNMNSALAMSVEEKVKLIH--PKWEDEEI---QAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 452 ~d~~~~~~~~~~~~~aG~~S~~~~v~~~~--~~~~eeea---~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .|.. ..+..++++|+|++.++.+.+. +..+|.-. .--.+.++..+......++.....-..++| T Consensus 378 ~d~~---~~~~~~v~~GilT~NE~Re~L~g~~pgdd~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~ 446 (542) T protein:vir:41 378 SDSV---RNCALLVQSGVLTPAEARERLFGLDGGPDIFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYR 446 (542) T ss_pred hHHH---HHHHHHHhCCCCCHHHHHHhhCCCCCCCccccccccccccccccCCcCCCCCchhhhhhcccccC Confidence 4433 3455678899999999765552 11222100 000000000000000000000001111111 No 230 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=91.50 E-value=0.016 Score=30.49 Aligned_cols=394 Identities=10% Similarity=-0.042 Sum_probs=153.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |..--..++.+ |..+. ...-|.....+. ....+|....+ ...+.+.---..++.+|+-+ T Consensus 1 m~~~~~~~~~~-----~~~~~----~~~~~~~~~~g~---------~~s~~~~~v~~---~~al~~~~v~~cv~~ia~~i 59 (419) T protein:vir:80 1 MFFSRQLLSNL-----GQTQP----GSGGWVSALLGS---------ARSEAGQVVTP---ASALSLTVLQNCVTLLAESI 59 (419) T ss_pred CCccccccccc-----CcCCC----CcchhhHHhhcc---------cccccCcccCh---HHhhccHHHHHHHHHHHHhh Confidence 21111000000 00000 000000000000 00001111111 11122222233555666655 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhh--c--ChHHHHH-HHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRI--D--NFDSKSV-KIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWI 153 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n--~f~~~~~-~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P 153 (518) -+=|..+--...+.. .+..+..+..+|.. | --...+. ..+...+..|.+++.+..+ +|++ .+-.++++.+-+ T Consensus 60 a~lp~~~~~~~~~~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i 138 (419) T protein:vir:80 60 AQLPVELYERSGDDR-KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTV 138 (419) T ss_pred ccCceEEEEecCCCc-ccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEE Confidence 544544422211111 11111123333321 1 1112333 3444566668777766544 3443 244445554433 Q ss_pred EEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 154 ~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) ... .+. .++ |+-.+... T Consensus 139 ~~~---------------~~~-~~~---------------------------y~~~~~~~-------------------- 155 (419) T protein:vir:80 139 MKG---------------PDL-KPM---------------------------YRVAGADP-------------------- 155 (419) T ss_pred EEC---------------CCc-eEE---------------------------EEEcCccc-------------------- Confidence 210 111 111 11111000 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNK 312 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~ 312 (518) +..+ .+.+++... .+..+|+|.+.-+...|.-....-.....-|+.|. +.-++ ....+. T Consensus 156 ~~~~----------~i~h~~~~~-----~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil-----~~~~~~ 215 (419) T protein:vir:80 156 LPQR----------LVHHVRWMS-----INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI-----ERPTDA 215 (419) T ss_pred cchh----------heEEecCCC-----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEE-----EecCCC Confidence 0001 123444321 13456999988777776655444333333456544 33332 111111 Q ss_pred CccccccCCCcch----hheeeec-CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc-c Q lcl|Aclame:pro 313 STDKEEWSMNVDE----DYFMQFK-GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE-V 386 (518) Q Consensus 313 ~~~~~~~~~d~d~----~~~~~~~-~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~-~ 386 (518) .+....-..+.-. +.|.... ...-.--+++..++.++....+.++.+..+...+.|....|++|..++..+++ . T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~ 295 (419) T protein:vir:80 216 PALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF 295 (419) T ss_pred CcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCc Confidence 0000000000000 0111100 00000011123466666667788899999888899999999999999864332 2 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) +..|-. . ...++.+|..++..+-...... .+.......+.+.+++++.+..|.+++++.+.+++. T Consensus 296 ~n~e~~--~----------~~f~~~~l~P~~~~ie~~l~~k---ll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~~~~~~ 360 (419) T protein:vir:80 296 SNIEHQ--S----------LQFVIYTLLPWVKRHEQAKTRD---LLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQ 360 (419) T ss_pred ccHHHH--H----------HHHHHHHHHHHHHHHHHHHhhh---ccCccccCCeEEEEechhhhccCHHHHHHHHHHHHh Confidence 222211 1 1122223333333332221111 111111224567777778888899999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|+|+.-++.+++. +.. +..++-+ +...-.....+.|...|.-+.... T Consensus 361 ~G~~T~NE~R~~~g--~~p~~gGD~~~--~~~n~~~~~~~~~~~~~~~~~~~~ 409 (419) T protein:vir:80 361 WGWLSINDIRRLEN--MPPVKGGDIYL--SPMNMVDASKPQPIPMGKTEPTKA 409 (419) T ss_pred CCCcCHHHHHHHhC--CCCCCCcceee--eccccccccccccccCCCCCchhh Confidence 99999999877652 221 1111100 000000011112222222111111 No 231 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=91.16 E-value=0.017 Score=30.26 Aligned_cols=413 Identities=7% Similarity=-0.014 Sum_probs=153.3 Q ss_pred cCchHHHHHH--HHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccc-cceecCchH--HHHHHHHH Q lcl|Aclame:pro 3 VWSVMTRFIK--GWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVH-DKLMNSGTG--NEIVVVAA 77 (518) Q Consensus 3 ~~~~~~~~~~--~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~l~--~~i~~~~A 77 (518) +++.+.+.+| ++-.. ...+.|...+-.. +++.+. .+.. .....+..| -.+++.+| T Consensus 1 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~------------~~~~~~-~~~~~~~~~a~~~~~v~~~v~~ia 60 (460) T protein:vir:10 1 MANRIIRALRELTGLDN-------KFNDAFIKYIGQT------------FTKYDN-NGKTYLEQGYNINPDVYSCISQMA 60 (460) T ss_pred CchhHHHHHhhhhccCC-------CchHHHHHhhccc------------cCCCcc-chhhhhHHHHhcchHHHHHHHHHH Confidence 4555555553 22111 1122222211100 111110 0000 000112222 23445555 Q ss_pred HHHcCCcceEEeccccccchH---------HH------------------HHHHHHHHhhc----ChHHHHHHHHHHHHh Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDE---------NL------------------TKQLKEALRID----NFDSKSVKIVELAGG 126 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~---------~~------------------~~~l~~vl~dn----~f~~~~~~~~e~~~a 126 (518) +-+.+=|..+--...+....+ .+ ...+..++..- .........+...+. T Consensus 61 ~~iA~lp~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll 140 (460) T protein:vir:10 61 AKTVAVPYTIKVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRL 140 (460) T ss_pred HhhhhCceEEEeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhh Confidence 555444444322211111000 00 00111111111 112223344556667 Q ss_pred hCCEEEEEEEE-----CCeE-EEEEEcCCeeEEEEEc-CcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccce Q lcl|Aclame:pro 127 SGVSAVKINIL-----NGRP-SISVHSSSQFWIDFKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGG 199 (518) Q Consensus 127 ~G~~~~k~~~d-----~~~i-~i~~v~ad~~~P~~~~-g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~ 199 (518) .|.+++.+..+ .|++ .+-.++|+.+-+.-.+ +... ++ ++ T Consensus 141 ~Gnay~~i~r~~~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~----------------~~--~~---------------- 186 (460) T protein:vir:10 141 NGNCYFYLMSPDDGINAGVPSQMYVLPAHLIKIVLKDDINLL----------------ST--DS---------------- 186 (460) T ss_pred cCCeEEEEEecCCCccCceeEEEEEEcCceEEEEEcCCCcee----------------ee--ee---------------- Confidence 78877766542 2344 3556666666664322 2110 00 00 Q ss_pred EEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCC-CCCcchhhhhHHHH Q lcl|Aclame:pro 200 FVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHL-NLGESDLSQCTNYL 278 (518) Q Consensus 200 ~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~s-PlG~S~~~~~~~~i 278 (518) .+....|.. ++.... +... -+.|++...+++--.++ -.|+|...-+...+ T Consensus 187 ~~~~~~~~~-~g~~~~------------------~~~~----------evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i 237 (460) T protein:vir:10 187 PIKSYMLIQ-GDQFIE------------------FNED----------EVIHTKYANPNFDLQGSHLYGMSPIRAILRNI 237 (460) T ss_pred eeeEEEEec-CceeEE------------------eccc----------ceEEEecCCCCcccccCccccccHHHHHHHHH Confidence 000000110 010000 0000 02334433333222223 36999998888777 Q ss_pred HHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccccCCCcchhheeeecC-CcCCCCCCCccceEecccccHHHH Q lcl|Aclame:pro 279 FAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKG-TLDAGAKLNDMIQFMQGDFRDGSY 357 (518) Q Consensus 279 ~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~ir~~~~ 357 (518) .-...+-.....-|+.|...-.| +.....-........-..-.+.|.+... .--.--+++..++.++.+..+.++ T Consensus 238 ~~~~~~~~~~~~~f~ng~~~~~i----~~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~ 313 (460) T protein:vir:10 238 NSQNSTIDNNVKTMQNGGVFGFI----HGGSTGLTQPQADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKP 313 (460) T ss_pred HHHHHHHHHHHHHHhcCCCccee----eecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHH Confidence 76655554444556766533222 1111110000000000000001111000 000011223346667777778899 Q ss_pred HHHHHHHHHHHHHHhCCCccccccCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCc Q lcl|Aclame:pro 358 RETMEYFAQKAVSKSGYNPATFNLGNR-EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIM 436 (518) Q Consensus 358 ~~~i~~~l~~i~~~~G~s~~tf~~d~~-~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~ 436 (518) .+..+...+.|....|++|..++...+ ..+.+-+...... .++.+|..++..+........... ... T Consensus 314 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~----------f~~~~l~P~~~~ie~~ln~kl~~~--~~~ 381 (460) T protein:vir:10 314 FDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKR----------VVTDNIQPDLVILKQAFDKKFIKR--FKG 381 (460) T ss_pred HHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhcCc--ccc Confidence 999999999999999999999987432 2211111111111 122233333333322221111110 111 Q ss_pred CCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCC Q lcl|Aclame:pro 437 RDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMET 515 (518) Q Consensus 437 ~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~ 515 (518) ...+.+.++|++. ....+.......++.+|+|+..++.+.+. |-.+++..++-+... .-+......+....++.|. T Consensus 382 ~~~~~i~~d~~~l--~~l~~d~~~~~~~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~-n~~~~~~~~~~~~~~~~nq 458 (460) T protein:vir:10 382 YENAVIEWDISEL--PEMQTDMVAMASWLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPS-NKVRIDDVSNNLIDSAFNQ 458 (460) T ss_pred cCCceEEeecchh--hhHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCCeeeecc-cccchhhcccccCCCcccC Confidence 2223455555443 22222333445567889999999877663 212333222111000 0000000111111122222 Q ss_pred CC Q lcl|Aclame:pro 516 KG 517 (518) Q Consensus 516 ~g 517 (518) .. T Consensus 459 ~~ 460 (460) T protein:vir:10 459 NQ 460 (460) T ss_pred CC Confidence 22 No 232 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=90.91 E-value=0.018 Score=30.10 Aligned_cols=425 Identities=14% Similarity=0.083 Sum_probs=184.7 Q ss_pred CCcCchHHH-----HH----------------------------------HHHhcCC-CC-hhhHHhhHHHHhhccchhh Q lcl|Aclame:pro 1 MGVWSVMTR-----FI----------------------------------KGWLNGK-PN-GSEPELIPKYLPLVPDNQK 39 (518) Q Consensus 1 ~~~~~~~~~-----~~----------------------------------~~w~~g~-p~-~~e~~~~~~~~~~~~~~~~ 39 (518) +|.|..-+. -+ ++-|-|. +. ..+.++|.+|+.+.. .+ T Consensus 9 f~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR~ma~--~p 86 (523) T protein:vir:68 9 FAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYRNLMT--NY 86 (523) T ss_pred hhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHHHHhh--cc Confidence 333332211 11 1112111 00 134455555554421 11 Q ss_pred hhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHc----CCcceEEecccc--ccchHHHHHHHHHHHhhcCh Q lcl|Aclame:pro 40 EWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYIS----GKPLSIDVTGVN--GSKDENLTKQLKEALRIDNF 113 (518) Q Consensus 40 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~----~e~~~i~v~~~~--~~~d~~~~~~l~~vl~dn~f 113 (518) +. -.+|-+-.-+.+. .+|.+|.++..+ .+-.+...+..+.|+.--+| T Consensus 87 Ev---------------------------d~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F 139 (523) T protein:vir:68 87 EV---------------------------DNAVSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLNHLSF 139 (523) T ss_pred ch---------------------------hhHHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhcc Confidence 11 0011111111111 123444443332 12235567778888888899 Q ss_pred HHHHHHHHHHHHhhCCEEEEEEEECCe-----EEEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeeccc Q lcl|Aclame:pro 114 DSKSVKIVELAGGSGVSAVKINILNGR-----PSISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQ 188 (518) Q Consensus 114 ~~~~~~~~e~~~a~G~~~~k~~~d~~~-----i~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~ 188 (518) ..+..+.+..+-+-|.++|.-++|..+ ..+..++|-++-+. +++.+.+...++.. T Consensus 140 ~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~v------------r~i~~~~~~g~~vi-------- 199 (523) T protein:vir:68 140 QRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYV------------REVITTTEAGVKIV-------- 199 (523) T ss_pred chhhhHHHHhheeeeEEEEEEEeeCCCccccceeeeeeCCcceeEE------------EeecCCCCcchhhh-------- Confidence 999999999999999999999988543 34666666655442 22222111111000 Q ss_pred ceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCc Q lcl|Aclame:pro 189 WDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGE 268 (518) Q Consensus 189 ~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~ 268 (518) ++.-.|-+|.-........... +..-+.+ -++.. .++|.. . +-.+.....=+ T Consensus 200 ---------~~~~e~f~Y~~~~~~~~~~g~~--~~~~~~i----kI~~d----------AI~y~h-S--GL~d~~~~~i~ 251 (523) T protein:vir:68 200 ---------KGYKEYFIYDTSHESYACDGRI--YEAGTKI----KIPKA----------AIVYAH-S--GLVDCCGKNII 251 (523) T ss_pred ---------hhhhhheeeccccccccccccc--cCCCcce----ecchh----------heeeee-c--cceeCCCCcee Confidence 0111111222110000000000 0000000 00000 111211 0 00000000113 Q ss_pred chhhhhHHHHHHHHHHHHH--HHHHHHhccceeee-chhhhccC------------------CCCCccccccCCCcchhh Q lcl|Aclame:pro 269 SDLSQCTNYLFAVDYFFTV--YMREGEKTKTKIAA-SERMFRKK------------------VNKSTDKEEWSMNVDEDY 327 (518) Q Consensus 269 S~~~~~~~~i~~lD~~~s~--~~~e~~~g~~ri~v-~~~~l~~~------------------~~~~~~~~~~~~d~d~~~ 327 (518) |-+..|+-.+..|=-.-+. +.|-.|+-++|||- +-.=|++. -+..++. -.+++. T Consensus 252 gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNKlvYDa~TGe-----v~ddrk 326 (523) T protein:vir:68 252 GYLHRAIKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQHVMNTMKNRIAYDATTGK-----IKNQQH 326 (523) T ss_pred ccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhhcceeEEeccCCe-----eccchh Confidence 5555555555555333332 22344555677763 11111110 0111111 122334 Q ss_pred eeeecCCcC----CCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc--c-chHHHHHHHHHHHHH Q lcl|Aclame:pro 328 FMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR--E-VKATEIWSLQDATVR 400 (518) Q Consensus 328 ~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~--~-~TAtEi~s~~~~t~~ 400 (518) ++.+..++. .|+.+ ..|+.+ |...--.-.+.+..+.+.+....+.+.+-+..+++ . .-++||....-+-.. T Consensus 327 ~msMlEDyWLpRReGgrg-TEItTL-pGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRDEikF~K 404 (523) T protein:vir:68 327 IMSMTEDYWLQRRDGKAV-TEVDTL-PGADNTGNMEDVRWFRNALYMALRIPITRIPSDQGGIQFDAGTSITRDELSFGK 404 (523) T ss_pred hhhhHhhhcccccCCCcc-cceeec-cccCCcChHHHHHHHHHHHHHHhCCcceeecCCCcceecccccchhHHHHHHHH Confidence 444333322 12222 223332 23323334566667778888888888877744322 1 135677666655555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH-------HHHHHH--hCCCCC Q lcl|Aclame:pro 401 KIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS-------TLNNMN--SALAMS 471 (518) Q Consensus 401 t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~-------~~~~~~--~aG~~S 471 (518) .+.+.|..+..-+.++++.=|-|-.-. .. .-...-...|.++|...-.-.+...++ .++.+. -+...| T Consensus 405 FI~rLR~rFs~lf~~~Lk~qLilKgii-t~--eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s 481 (523) T protein:vir:68 405 FIRELQHKFEEIFLDPLKTNLILKGII-TE--DEWNDEINNIKIKFHRDSYFSELKDAEILERRINMLQMAEPFIGKYIS 481 (523) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCC-CH--HHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccch Confidence 666666666666666665544331100 00 000001134667776433333322222 222221 123568 Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhc-cCc Q lcl|Aclame:pro 472 VEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAI-GGM 513 (518) Q Consensus 472 ~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~-~~~ 513 (518) .++..+.. -.+||+|.++|-+.|++|....--++|..- ..| T Consensus 482 ~~yi~k~I-Lr~tDeei~~~~kqI~~E~k~~~~~~p~~e~~~f 523 (523) T protein:vir:68 482 HRTAMKDI-LQMSDEEIEQEAKQIEEESKEARFQDPDQEQEDF 523 (523) T ss_pred hHHHHHHH-hccCHHHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 88877665 368999999999999999776655555422 344 No 233 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=90.70 E-value=0.02 Score=29.96 Aligned_cols=382 Identities=14% Similarity=0.070 Sum_probs=147.2 Q ss_pred hcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccc-cceecCchHHHHHHHHHHHHcCCcceEEecccc Q lcl|Aclame:pro 15 LNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVH-DKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVN 93 (518) Q Consensus 15 ~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~ 93 (518) ....| ...-.| .-|......+.. ...+..+---..++.+|+-|-+=|.. +-..+ T Consensus 1 ~~~~~----------------~~~g~~-------~~~~~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~--l~~~~ 55 (723) T protein:vir:94 1 MTTFP----------------SGAGGW-------NAWSADSVFGNGAKGWSNSAVAYRCISMLANNAASVDLV--VRGPD 55 (723) T ss_pred Ccccc----------------cCCCcc-------ccccccccccccHHHHhhhHHHHHHHHHHHHhhccceeE--EEcCC Confidence 11111 110000 011111111111 11122222233455555555443433 32222 Q ss_pred ccchHHHHHHHHHHHhh--cCh--HHHHHHHHHH-HHhhCCEEEEEEEEC----CeE-EEEEEcCCeeEEEEEcCcEEEE Q lcl|Aclame:pro 94 GSKDENLTKQLKEALRI--DNF--DSKSVKIVEL-AGGSGVSAVKINILN----GRP-SISVHSSSQFWIDFKNNEPFRF 163 (518) Q Consensus 94 ~~~d~~~~~~l~~vl~d--n~f--~~~~~~~~e~-~~a~G~~~~k~~~d~----~~i-~i~~v~ad~~~P~~~~g~~~~~ 163 (518) ....+ ..-+-.+|.. |.+ ...|.+.+.. .+-.|.+++.+..++ |.+ .+..++++...+...++. T Consensus 56 ~~~~~--~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~---- 129 (723) T protein:vir:94 56 GELDE--LHPLSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAA---- 129 (723) T ss_pred Cccch--hhHHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCC---- Confidence 11111 1123333431 211 1234455554 444477666654332 222 233334433333222110 Q ss_pred EEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecC Q lcl|Aclame:pro 164 NFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIG 243 (518) Q Consensus 164 ~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg 243 (518) ..++. .+.+.|.++..++ ..+.+ ..+ T Consensus 130 ------------~~~~~-----------------~~~~~y~~~~~~G-~~~~~------------------~~~------ 155 (723) T protein:vir:94 130 ------------DAVPQ-----------------AQIIGYVIERTDG-VRVPV------------------LAD------ 155 (723) T ss_pred ------------cccee-----------------eeeeEEEEEecCc-eeEEe------------------ccc------ Confidence 00100 0111121111111 10000 000 Q ss_pred CCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccc-eeeechhhhccCCCCCccccccCCC Q lcl|Aclame:pro 244 LKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKT-KIAASERMFRKKVNKSTDKEEWSMN 322 (518) Q Consensus 244 ~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~-ri~v~~~~l~~~~~~~~~~~~~~~d 322 (518) -+.|++.. |.. +.-.|+|.+.-+...|.....+-.--..-|+.|-. .-++. ........ .. T Consensus 156 ----dIiHir~~--~~~--dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~-----~~~l~~e~-----~~ 217 (723) T protein:vir:94 156 ----EMLWLRFS--DPY--DPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVN-----LGDMDEQT-----FT 217 (723) T ss_pred ----ceEEecCC--CCC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEE-----cCCCCHHH-----HH Confidence 02344432 111 22359999988777776544333333334566543 33321 11000000 00 Q ss_pred cchhheeeec-CCcC-------CC-------CCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccch Q lcl|Aclame:pro 323 VDEDYFMQFK-GTLD-------AG-------AKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVK 387 (518) Q Consensus 323 ~d~~~~~~~~-~~~~-------~~-------~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~T 387 (518) .-...|.... +... ++ .+.+-.++.++.+..+.++++..+...+.|....|++|..++.+....+ T Consensus 218 ~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~~st~sN 297 (723) T protein:vir:94 218 KTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLGGSTYEN 297 (723) T ss_pred HHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCCCCCccc Confidence 0001111100 0000 00 0112345666777778899999999999999999999987754321111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCC--CCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 388 ATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPD--PMSVNLNELSSTLNNMN 465 (518) Q Consensus 388 AtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D--~i~~d~~~~~~~~~~~~ 465 (518) ..+ ... ..+..+|...+..+-......... ...+.+.++|+. .+..|.+++++.+..++ T Consensus 298 ~e~---~~~----------~f~~~tL~P~~~~ie~~ln~~Ll~------~~g~~~~~~f~~~~lLr~D~~~r~~~~~~~v 358 (723) T protein:vir:94 298 QAE---AKA----------AVWTETLIPQMEVMASITDLQLLP------DIGWTVEWDFNSVPALQEDLEAQAGRNQGYL 358 (723) T ss_pred HHH---HHH----------HHHHHHHHHHHHHHHHHHhHhhcc------cccCceEEeecchhhhhcCHHHHHHHHHHHH Confidence 111 111 112233333333333222211111 112356778875 35689999999999999 Q ss_pred hCCCCCHHHHHHHHcC-CCC--H------------------HHHHHH-HHHHHH--hccccCCCCch----hccCcCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIHP-KWE--D------------------EEIQAE-VKRIYL--ENAIGEVPDPE----AIGGMETKG 517 (518) Q Consensus 466 ~aG~~S~~~~v~~~~~-~~~--e------------------eea~ee-v~rI~~--E~~~~~~~dp~----~~~~~~~~g 517 (518) ++|+|+.-++.+.+.. ... + ..+.+| -+|+.+ |.-.++.|.|. ..--++... T Consensus 359 ~~G~~T~NE~R~~lglpPi~gGd~~~~~~p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 438 (723) T protein:vir:94 359 VNDVLMVDEVRATIGLDPLPGGIGQMTLTPYRAQFAPAPAPAPAVEEGAARMLALLERVAADRPLPELPVRATTVLHHDP 438 (723) T ss_pred hCCCcCHHHHHHHhCCCCCCCCcccceeccccccccCCCCCCccchhhhHhhhhhccccccccCcCCCCCCCCCCCCCCc Confidence 9999999998776631 111 1 000001 011111 11111111110 011123334 Q ss_pred C Q lcl|Aclame:pro 518 G 518 (518) Q Consensus 518 G 518 (518) | T Consensus 439 ~ 439 (723) T protein:vir:94 439 G 439 (723) T ss_pred c Confidence 4 No 234 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=89.44 E-value=0.026 Score=29.24 Aligned_cols=427 Identities=12% Similarity=0.054 Sum_probs=192.0 Q ss_pred CCcCchH-------------------------------------HHHHHHHh---cCCCChhhHHhhHHHHhhccchhhh Q lcl|Aclame:pro 1 MGVWSVM-------------------------------------TRFIKGWL---NGKPNGSEPELIPKYLPLVPDNQKE 40 (518) Q Consensus 1 ~~~~~~~-------------------------------------~~~~~~w~---~g~p~~~e~~~~~~~~~~~~~~~~~ 40 (518) |-.|..- ...+-+-| +|.-. .+ ++|.+|+.+... ++ T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~-~~-eLI~~YR~ma~~--pE 76 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIP-VK-ELIKSYRALAEY--HE 76 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCCCCCCCceEEecccccceecceeccccccccCccc-hH-HHHHHHHHHhhc--cc Confidence 1111100 00000111 11111 12 455555443210 11 Q ss_pred hhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCcceEEecccc--ccchHHHHHHHHHHHhhcChHHHHH Q lcl|Aclame:pro 41 WSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVN--GSKDENLTKQLKEALRIDNFDSKSV 118 (518) Q Consensus 41 ~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~--~~~d~~~~~~l~~vl~dn~f~~~~~ 118 (518) . ..+..... -..-.... ..+|.++.+...+ .+-.++..+.++.|+.--+|..+.. T Consensus 77 v-d~Av~eIv-ne~iv~d~---------------------~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~ 133 (511) T protein:vir:56 77 V-DDAIQEIV-DEAIVYEN---------------------DKEVVWLNLDNTDFSENIKAKINEEFDRVVSLLQMRKHGY 133 (511) T ss_pred h-hhHHHHhh-cceeEecC---------------------CCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhh Confidence 1 00000000 00000001 1123444443333 1223556777888888888999999 Q ss_pred HHHHHHHhhCCEEEEEEEECCe--EEEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeec Q lcl|Aclame:pro 119 KIVELAGGSGVSAVKINILNGR--PSISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKL 196 (518) Q Consensus 119 ~~~e~~~a~G~~~~k~~~d~~~--i~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~ 196 (518) +.+..+-+-|.++|.-.+|..+ ..+.+++|-+.-++ +++++.+... +... T Consensus 134 ~~fR~WYVDgRi~fHkiid~k~GI~eLr~lDPr~i~~v------------r~i~~~~~~~----------------~~v~ 185 (511) T protein:vir:56 134 KWFRKWYVDSRIYFHKILDKDNNIIELRPLNPMKMELV------------REIQKETIDG----------------VEVV 185 (511) T ss_pred HHHhhhhhcceEEEEEEeccccceeehhhcCcccchhh------------hhhhcccccc----------------cccc Confidence 9999999999999998776432 23444454444332 1111111000 0001 Q ss_pred cceEEEEEEEeccCCcc-ccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhH Q lcl|Aclame:pro 197 SGGFVTYSVIKIDGDKT-TPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCT 275 (518) Q Consensus 197 ~~~~I~n~ly~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~ 275 (518) +++..|.+|...+... +..... +. ......+ +.-.++|..-... .....+++.+|-+..|+ T Consensus 186 -~~~~ey~~Y~~~~~~~~~~~~~~--~~----------~~~~vkI----~~daI~y~hSGL~-d~~~~~g~i~syLhkAi 247 (511) T protein:vir:56 186 -KGTLEYYVYKQSDYKMPSWMSAT--NR----------AQTSFRI----PKDAIVFAHSGLM-RGCADDPYIIGYLDRAI 247 (511) T ss_pred -cceeeeeEecCCCcccCcccccc--cc----------cccceee----chhheeeecccce-eccCCCCeeeccchhhh Confidence 1234555554211110 000000 00 0000000 0111222211100 01134566788888888 Q ss_pred HHHHHHHHHHHHH--HHHHHhccceeee-chhhhccC------------------CCCCccccccCCCcchhheeeecCC Q lcl|Aclame:pro 276 NYLFAVDYFFTVY--MREGEKTKTKIAA-SERMFRKK------------------VNKSTDKEEWSMNVDEDYFMQFKGT 334 (518) Q Consensus 276 ~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~~ 334 (518) -.+..|=-.-+.+ .+-.|+-++|||- +-.=|++. -+..++. -.+++.++.+..+ T Consensus 248 Kp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGe-----v~ddrk~msMlED 322 (511) T protein:vir:56 248 KPANQLKMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQ-----VKNTTNAMSMLED 322 (511) T ss_pred HHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCce-----eccchhhhhhHhh Confidence 7777774444433 2444566677763 11111110 0111111 0223344444333 Q ss_pred cC----CCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc--c---chHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 335 LD----AGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR--E---VKATEIWSLQDATVRKIEKK 405 (518) Q Consensus 335 ~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~--~---~TAtEi~s~~~~t~~t~~~~ 405 (518) +. .|+.+ ..|+.+ |...--.-++.+..+.+.+....+.+.+-+..+++ + .-++||....-+-...+.+. T Consensus 323 yWLpRReGgrg-TEItTL-pGgqnlgem~DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF~KFI~RL 400 (511) T protein:vir:56 323 YYLPRREGSKG-TEVSTL-PGGQSLGDIEDVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELKFTKFVKRL 400 (511) T ss_pred hcccccCCCCc-cceeec-cccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHHHHHHHHHH Confidence 22 12222 223322 33332334566777778888888888888865431 1 13677766665656666677 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHH-------HHH--hCCCCCHHHHH Q lcl|Aclame:pro 406 KRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLN-------NMN--SALAMSVEEKV 476 (518) Q Consensus 406 ~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~-------~~~--~aG~~S~~~~v 476 (518) +..+..-+.++++.=|-|-.-. .. .-...-...|.++|...-.-.+...++.+. .+. -+...|.++.. T Consensus 401 R~rFs~lF~~~Lk~qLilKgii-t~--eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~~yi~ 477 (511) T protein:vir:56 401 QTKFETVITDPLKHQLIVNNII-TE--EEWDANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYSHKYIQ 477 (511) T ss_pred HHHHHHHHHHHHHHhhhhccCC-CH--HHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccccchHHHH Confidence 7666666666665544331100 00 000001134677776433333322222222 221 12356888877 Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCc Q lcl|Aclame:pro 477 KLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM 513 (518) Q Consensus 477 ~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~ 513 (518) +.. -.+||+|.++|-+.|++|....--+.|+ .+| T Consensus 478 k~I-Lr~tDeei~~~~k~I~~E~k~~~~~~~e--~~f 511 (511) T protein:vir:56 478 KNI-LRLSDDQITAMQSEIDEEETNPRFQQDD--QGF 511 (511) T ss_pred HHH-hccCHHHHHHHHHHHHHhhcCCCCCCcc--cCC Confidence 665 3689999999999999998776555554 234 No 235 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=88.77 E-value=0.03 Score=28.91 Aligned_cols=434 Identities=12% Similarity=0.002 Sum_probs=162.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) |-=-|++..- .|-..-. ..++.+...+..+....++..+-.....|=.. .......++==+.+...++.+|+-| T Consensus 1 ~~~~~~~~~~--~~~~~l~--~r~~~L~~~R~~~e~~w~e~a~~~lP~~~~~~--~~~~~~~~~~dstg~~a~~~LAa~l 74 (516) T protein:vir:10 1 MKQSTDLEYG--GKRSKIP--KLWEKFSTKRSSFLDRAKHYSKLTLPYLMNDK--GDNETSQNGWQGVGAQATNHLANKL 74 (516) T ss_pred CCchhhHhhh--hHHHHHH--HHHHHHHHhhhHHHHHHHHHHHhhcccccCCC--CCcccccccccchHHHHHHHHHHHH Confidence 2222222111 1110000 00111111122222222222222222111111 1111111221223566666666665 Q ss_pred cCCc-----ceEEecccccc---------chHHHHH-------HHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECC Q lcl|Aclame:pro 81 SGKP-----LSIDVTGVNGS---------KDENLTK-------QLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNG 139 (518) Q Consensus 81 ~~e~-----~~i~v~~~~~~---------~d~~~~~-------~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~ 139 (518) .+-. +=+.+...+.. +...+++ .+...+..++|+..+.++.....+.|.+++ |.+.. T Consensus 75 ~~~ltpp~~~WF~L~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~d~~ 152 (516) T protein:vir:10 75 AQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCML--YKPSK 152 (516) T ss_pred HhhhcCCCCccccccCChhhHhhhhccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeE--EecCC Confidence 5542 22333322210 0111223 345578889999999999999999999874 44432 Q ss_pred eEEEEEEcCCeeEEEEE-cCcEEEEEEEEEEEe----------------------cCceEEEEEEEEeecccceeeeeec Q lcl|Aclame:pro 140 RPSISVHSSSQFWIDFK-NNEPFRFNFFEEIPT----------------------SNKADIYYLVESREIKQWDKEGKKL 196 (518) Q Consensus 140 ~i~i~~v~ad~~~P~~~-~g~~~~~~f~~~~~~----------------------~~~~~~y~~lE~he~~~~~~~~~~~ 196 (518) . .+..++-..|+-.-+ +|++..+++-.++.. .++-.+|++.++.. T Consensus 153 ~-~~~~~pl~~y~v~~d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~i~t~v~~~~----------- 220 (516) T protein:vir:10 153 G-AISAIPMHHYVVNRDTNGDLLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDSIKLYTHAKYLG----------- 220 (516) T ss_pred C-CeEEEEcCeEEEeeCCCCCeEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCceEEEEEEEecC----------- Confidence 2 245556566555433 477666654332211 00111222222210 Q ss_pred cceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCC---CcceEEEecCcccCccccCCCCCcchhhh Q lcl|Aclame:pro 197 SGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGL---KSMGAYLINNSPSNTRYPHLNLGESDLSQ 273 (518) Q Consensus 197 ~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~---~~~~~~~~~n~~~N~~~~~sPlG~S~~~~ 273 (518) ..+. ..|...++. .. . ...+. ..|+++.--+ ...++.||+|--.. T Consensus 221 ~~~~---~~~~~~d~~-~~-------------------~----~~s~~~~~e~P~~~~Rw~-----~~~ge~YGrgp~~~ 268 (516) T protein:vir:10 221 EGFW---ELKQSADDI-PV-------------------G----KVSKIKSEKLPFIPLTWK-----RSYGEDWGRPLAED 268 (516) T ss_pred CCce---EEEEeeCce-ee-------------------c----cccccccccCCeeeeeee-----ecCCCCcccchHHH Confidence 0110 001100000 00 0 00111 1233322112 23467889999999 Q ss_pred hHHHHHHHHHHHHHHHH-HHHhccceeeechhhh-ccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccc Q lcl|Aclame:pro 274 CTNYLFAVDYFFTVYMR-EGEKTKTKIAASERMF-RKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD 351 (518) Q Consensus 274 ~~~~i~~lD~~~s~~~~-e~~~g~~ri~v~~~~l-~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (518) +.+-++.|+..--.... .....+....||++.+ +... ..+.....+.. |..+...+-.+.+. T Consensus 269 ~L~D~k~L~~l~~~~l~~~~~a~~~~~lv~p~g~~~~~~---------l~~~~~g~~~~-------g~~~~v~~~q~~~~ 332 (516) T protein:vir:10 269 YSGDLFVIQFLSEAVARGAALMADIKYLIRPGAQTDVDH---------FVNSGTGEVVT-------GVEEDIHIVQLGKY 332 (516) T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCcccCcccccchhh---------hccCCCceeec-------CCcccceeeecCcc Confidence 99999999865544444 3345666666644332 2110 01111112211 11111111112232 Q ss_pred ccHHHHHHHHHHHHHHHHHHhCCCcccccc-CCccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 352 FRDGSYRETMEYFAQKAVSKSGYNPATFNL-GNREVKATEIWSLQDATVRKIEKKKRLIQN-VYEQMLWDFLYLLTGGTN 429 (518) Q Consensus 352 ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~-d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~-~l~~li~~il~l~~~~~~ 429 (518) .....-...|+.+-+.|.... + ...+.. ++..+|||||..+.+...+...-.-..+.. .|..++..++. .. T Consensus 333 ~d~~~~~~~i~~~~~rI~~af-~-~~~l~~rd~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~---~~-- 405 (516) T protein:vir:10 333 ADLTPISAVLEVYTRRIGVVF-M-METMTRRDAERVTAVEIQRDALEIEQNMGGVYSLFATTMQSPVAMWGLL---EA-- 405 (516) T ss_pred cchHHHHHHHHHHHHHHHHHH-h-hhhhhccCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---hh-- Confidence 233334444444444443332 1 111222 455689999988877766555443333322 22333332211 11 Q ss_pred cccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHH------Hh--CCCC-------CHHHHHHHH---c---CC--CCHH Q lcl|Aclame:pro 430 NKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNM------NS--ALAM-------SVEEKVKLI---H---PK--WEDE 486 (518) Q Consensus 430 ~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~------~~--aG~~-------S~~~~v~~~---~---~~--~~ee 486 (518) .+..++.-+.++--. ..+...+++.+..+ ++ +++- ....+++.+ . +. -++| T Consensus 406 ----~p~~P~~lv~~~~v~--~i~~L~raq~~~~i~~~~q~i~~~~q~~p~v~d~id~d~~~~~~a~~~gvp~~~irs~e 479 (516) T protein:vir:10 406 ----GDSFTSDLVDPVIIT--GIEALGRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAE 479 (516) T ss_pred ----CCCCChhhcCcceeh--hHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCHHHHHHHHHHHhCCChhccCCHH Confidence 111111122222111 12222222211111 10 1111 111122111 1 01 2455 Q ss_pred HHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 487 EIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 487 ea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) |++++.++-++.|...+ ..+.... ...|+ T Consensus 480 ev~~~r~~~~~~q~~~~-~~~~~~~--~~~~~ 508 (516) T protein:vir:10 480 EMEQEQEAQMQAQQAQM-LEEGVAK--AVPGV 508 (516) T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhh--cccch Confidence 55555443322222221 1222221 22222 No 236 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=88.40 E-value=0.033 Score=28.74 Aligned_cols=428 Identities=13% Similarity=0.077 Sum_probs=186.8 Q ss_pred CCcC------------------------------------chHHHHH-HHHh---cCCCChhhHHhhHHHHhhccchhhh Q lcl|Aclame:pro 1 MGVW------------------------------------SVMTRFI-KGWL---NGKPNGSEPELIPKYLPLVPDNQKE 40 (518) Q Consensus 1 ~~~~------------------------------------~~~~~~~-~~w~---~g~p~~~e~~~~~~~~~~~~~~~~~ 40 (518) +|.| ..=..++ ++-| .+.+ ..+.++|.+|+.+.. .++ T Consensus 11 f~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~-~~~~eLI~~YR~ma~--~pE 87 (524) T protein:vir:10 11 LKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEV-KNTRELIDTYRNLMN--NYE 87 (524) T ss_pred hhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchh-hhHHHHHHHHHHHhh--ccc Confidence 1111 1111122 3333 1211 145666777665531 111 Q ss_pred hhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCcceEEeccccc--cchHHHHHHHHHHHhhcChHHHHH Q lcl|Aclame:pro 41 WSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNG--SKDENLTKQLKEALRIDNFDSKSV 118 (518) Q Consensus 41 ~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~--~~d~~~~~~l~~vl~dn~f~~~~~ 118 (518) .. .+..... -..-+... ..+|.++.++..+- +-.++..+..+.|+.--+|..+.. T Consensus 88 vd-~Av~eIV-neaiv~d~---------------------~~~pV~l~Ld~~~~s~siK~kI~eeF~~Il~ll~F~~~~~ 144 (524) T protein:vir:10 88 VD-NAVQEIV-SDAIVYED---------------------DKEVVALNLDGTDFSQSIKDKILAEFSEVLNLLNFQRKGT 144 (524) T ss_pred hh-hHHHHhh-cceeEecC---------------------CCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhh Confidence 10 0000000 00000001 11234444433331 223556777888888888999999 Q ss_pred HHHHHHHhhCCEEEEEEEECCe-----EEEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeee Q lcl|Aclame:pro 119 KIVELAGGSGVSAVKINILNGR-----PSISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEG 193 (518) Q Consensus 119 ~~~e~~~a~G~~~~k~~~d~~~-----i~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~ 193 (518) +.+..+-+-|.++|...+|.++ ..+.+++|-++-+. +++.+.....++.. T Consensus 145 ~~fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~v------------r~i~~~~~~~~~vi------------- 199 (524) T protein:vir:10 145 DHFQRWYVDSRIFFHKIINPKKMKDGVQELRRLDPRQVQYI------------REIVTRMEDGVKIV------------- 199 (524) T ss_pred HHHhhheeeceEEEEEEeeCCCccccceeeeeeCCccceee------------eeecccCcccchhh------------- Confidence 9999999999999998887432 34666666665443 22211111111100 Q ss_pred eeccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhh Q lcl|Aclame:pro 194 KKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQ 273 (518) Q Consensus 194 ~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~ 273 (518) +++-.|-+|- .++............-+.+ -++.+ .++|..- +-.+.....=+|-+.. T Consensus 200 ----~~~~e~f~Y~--~~~~~~~~~~~~~~~~~~i----kI~~d----------AIvy~~S---GL~d~~~~~i~syLhk 256 (524) T protein:vir:10 200 ----DGYREFFVYD--TGHESYCADGRIYSAGTKV----KIPRA----------AVVYAHS---GLLDCCGKNIIGYLQR 256 (524) T ss_pred ----cchhhheeec--CCCcccccCcceecCCcce----ecchh----------heeeecc---CcccCCCCceeccchH Confidence 0111122221 0000000000000000000 00111 1122110 0000000011355555 Q ss_pred hHHHHHHHHHHHHHH--HHHHHhccceeee-chhhhccC------------------CCCCccccccCCCcchhheeeec Q lcl|Aclame:pro 274 CTNYLFAVDYFFTVY--MREGEKTKTKIAA-SERMFRKK------------------VNKSTDKEEWSMNVDEDYFMQFK 332 (518) Q Consensus 274 ~~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~ 332 (518) |+-.+..|=-.-+.+ .|-.|+-++|||- +-.=|++. -+..++. -.+++.++.+. T Consensus 257 AiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa~TGe-----v~ddrk~msMl 331 (524) T protein:vir:10 257 AIKPANQLKLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDASTGK-----IKNQQHNMSMT 331 (524) T ss_pred hhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeccCCe-----eccchhhhhhH Confidence 655555553333332 2444556677763 11111110 0111111 12233444433 Q ss_pred CCcC----CCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc-c---chHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 333 GTLD----AGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR-E---VKATEIWSLQDATVRKIEK 404 (518) Q Consensus 333 ~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~-~---~TAtEi~s~~~~t~~t~~~ 404 (518) .++. .|+.+ ..|+.+ |...--.-.+.+..+.+.+....+.+.+-+..++. . .-++||....-+-...+.+ T Consensus 332 EDyWLpRReGgrg-TEItTL-pGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~~EItRDEiKF~KFI~r 409 (524) T protein:vir:10 332 EDYWLQRRDGKAV-TEVDTM-PGATGMSDMDDVLYFRTALYRALRIPESRIPSESNSGVMFDAGTAITRDELKFAKWIRQ 409 (524) T ss_pred hhhcccccCCCCc-cceeec-cccCCcChHHHHHHHHHHHHHHhCCCchhccCCCCccccccccchhhHHHHHHHHHHHH Confidence 3322 12222 223322 23332334566677778888888888888854321 1 2466776666555556666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHH-------HHHHH--hCCCCCHHHH Q lcl|Aclame:pro 405 KKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSST-------LNNMN--SALAMSVEEK 475 (518) Q Consensus 405 ~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~-------~~~~~--~aG~~S~~~~ 475 (518) .|..+..-+.++++.=|-|-.-. .. .-...-...|.++|...-.-.+...++. ++.+. -+...|.++. T Consensus 410 LR~rFs~lf~~~L~~qLilKgii-t~--eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi 486 (524) T protein:vir:10 410 LQNKFEEIFLDPLKTNLILKKII-TE--DEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPFIGKYISHQTA 486 (524) T ss_pred HHHHHHHHHHHHHHHhhhhccCC-CH--HHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHH Confidence 66666666666665544331100 00 0000011346677764333333222222 22221 1235688887 Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccccCCCCc-hhccCc Q lcl|Aclame:pro 476 VKLIHPKWEDEEIQAEVKRIYLENAIGEVPDP-EAIGGM 513 (518) Q Consensus 476 v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp-~~~~~~ 513 (518) .+.. -.+||+|.++|-+.|++|....--++| .....| T Consensus 487 ~k~I-Lr~tDeei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 487 MKDF-LQMTDEEINQEAKQIEEESKEARFQNPDEEEEDF 524 (524) T ss_pred HHHH-hccCHHHHHHHHHHHHHHhhcCCCCCCChhhhcC Confidence 6665 468999999999999999776655555 233445 No 237 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=88.02 E-value=0.035 Score=28.57 Aligned_cols=426 Identities=15% Similarity=0.051 Sum_probs=185.5 Q ss_pred CC-cCchHHHHHHHHhcC-CCC-hhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MG-VWSVMTRFIKGWLNG-KPN-GSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~-~~~~~~~~~~~w~~g-~p~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) -+ +.+.-.-..+.-|-| ++. ..+.++|.+|+.+.. .++.. .+... |+.+.. T Consensus 47 ~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR~ma~--~pEvd-~Av~e-----------------------IVneai 100 (524) T protein:vir:72 47 SNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYRNLMN--NYEVD-NAVSE-----------------------IVSDAI 100 (524) T ss_pred ccccccccceeeeehhcccccccchHHHHHHHHHHHhh--ccchh-hHHHH-----------------------hhccee Confidence 00 000001011111222 111 145677777776532 12210 00000 000000 Q ss_pred -HHHcCCcceEEecccccc--chHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe-----EEEEEEcCC Q lcl|Aclame:pro 78 -EYISGKPLSIDVTGVNGS--KDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR-----PSISVHSSS 149 (518) Q Consensus 78 -~ll~~e~~~i~v~~~~~~--~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~-----i~i~~v~ad 149 (518) .=-..+|.++.+...+.+ -.+...+.++.|+.--+|..+..+.+..+-+-|.++|.-++|..+ ..+.+++|- T Consensus 101 v~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr 180 (524) T protein:vir:72 101 VYEDDTEVVALNLDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPR 180 (524) T ss_pred EecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeeeCCc Confidence 001122344444333321 134566777888888889999999999999999999999988543 346666666 Q ss_pred eeEEEEEcCcEEEEEEEEEEEecCc--eEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccc Q lcl|Aclame:pro 150 QFWIDFKNNEPFRFNFFEEIPTSNK--ADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITS 227 (518) Q Consensus 150 ~~~P~~~~g~~~~~~f~~~~~~~~~--~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~ 227 (518) ++-+. +++.+... ..+++ ++-.+-+|.-........... +..-+. T Consensus 181 ~i~~v------------r~i~~~~~~~~~vi~-------------------~~~e~f~Y~~~~~~y~~~g~~--~~~~~~ 227 (524) T protein:vir:72 181 QVQYV------------REIITETEAGTKIVK-------------------GYKEYFIYDTAHESYACDGRM--YEAGTK 227 (524) T ss_pred cceee------------eeeccCCCccchhhc-------------------chhhheeeccCccccccCccc--cCCCcc Confidence 55442 22211111 11111 111112222110000000000 000000 Q ss_pred ccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHH--HHHHHHhccceeee-chh Q lcl|Aclame:pro 228 YLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTV--YMREGEKTKTKIAA-SER 304 (518) Q Consensus 228 ~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~--~~~e~~~g~~ri~v-~~~ 304 (518) + -++.. .++|.. . +-.+.....=+|-+..|+-.+..|=-.-+. +.|-.|+-++|||- +-. T Consensus 228 i----kI~~d----------AI~y~h-S--GL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvG 290 (524) T protein:vir:72 228 I----KIPKA----------AVVYAH-S--GLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTG 290 (524) T ss_pred e----ecchh----------heeeee-c--cceeCCCCceeccchhhhHhHHhhhHHHhhHHHHhhhccccceEEEEecC Confidence 0 00000 111211 0 000000001135555555555555333332 22344555677763 111 Q ss_pred hhccC------------------CCCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHHH Q lcl|Aclame:pro 305 MFRKK------------------VNKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETME 362 (518) Q Consensus 305 ~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~ 362 (518) =|++. -+..++. -.+++.++.+..++. .|+.+ ..|+.+ |..+--.-.+.+. T Consensus 291 nlPk~KAeqYl~~im~k~KNklvYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrg-TEItTL-pGgqnlgem~DV~ 363 (524) T protein:vir:72 291 NMPARKAAEHMQHVMNTMKNRVVYDASTGK-----IKNQQHNMSMTEDYWLQRRDGKAV-TEVDTL-PGADNTGNMEDIR 363 (524) T ss_pred CCCchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhHhhhcccccCCCcc-cceeec-cccCCcChHHHHH Confidence 11110 0111111 122344444433322 12222 223332 2232333456666 Q ss_pred HHHHHHHHHhCCCccccccCC-cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCC Q lcl|Aclame:pro 363 YFAQKAVSKSGYNPATFNLGN-RE---VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRD 438 (518) Q Consensus 363 ~~l~~i~~~~G~s~~tf~~d~-~~---~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~ 438 (518) .+.+.+....+.+.+-+..++ +. .-++||....-+-...+.+.|..+..-+.++++.=|-|-.-. .. .-...- T Consensus 364 YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgii-t~--eew~~i 440 (524) T protein:vir:72 364 WFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGII-TE--DEWNDE 440 (524) T ss_pred HHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CH--HHHHHH Confidence 777788888888877774331 11 245677666655555666666666666666665544331100 00 000001 Q ss_pred ceeeEEEeCCCCCCCHHHHHHH-------HHHHH--hCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchh Q lcl|Aclame:pro 439 EIRVIIEFPDPMSVNLNELSST-------LNNMN--SALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEA 509 (518) Q Consensus 439 ~~~v~v~f~D~i~~d~~~~~~~-------~~~~~--~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~ 509 (518) ...|.++|...-.-.+...++. ++.+. -+...|.++..+.. -.+||+|.++|-+.|++|....--++|.. T Consensus 441 ~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~I-Lr~tDeei~~~~k~I~~E~k~~~~~~~~~ 519 (524) T protein:vir:72 441 INNIKIEFHRDSYFAELKEAEILERRINMLTMAEPFIGKYISHRTAMKDI-LQMTDEEIEQEAKQIEEESKEARFQDPDQ 519 (524) T ss_pred hhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH-hccCHHHHHHHHHHHHHHhhcCCCCCCch Confidence 1346677764333333222222 22221 12356888877665 36899999999999999977665555542 Q ss_pred -ccCc Q lcl|Aclame:pro 510 -IGGM 513 (518) Q Consensus 510 -~~~~ 513 (518) ...| T Consensus 520 ~~~~f 524 (524) T protein:vir:72 520 EQEDF 524 (524) T ss_pred hhhcC Confidence 2445 No 238 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=87.29 E-value=0.04 Score=28.26 Aligned_cols=426 Identities=15% Similarity=0.050 Sum_probs=185.3 Q ss_pred CC-cCchHHHHHHHHhcC-CCC-hhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MG-VWSVMTRFIKGWLNG-KPN-GSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~-~~~~~~~~~~~w~~g-~p~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) -+ +.+.-.-..+.-|-| ++. ..+.++|.+|+.+.. .++.. .+... |+.+.. T Consensus 47 ~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR~ma~--~pEvd-~Av~e-----------------------IVneai 100 (524) T protein:vir:10 47 SNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYRNLMN--NYEVD-NAVSE-----------------------IVSDAI 100 (524) T ss_pred ccccccccceeeeehhcccccccchHHHHHHHHHHHhh--ccchh-hHHHH-----------------------hhccee Confidence 00 000001011111222 111 145677777776532 12210 00000 000000 Q ss_pred -HHHcCCcceEEecccccc--chHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe-----EEEEEEcCC Q lcl|Aclame:pro 78 -EYISGKPLSIDVTGVNGS--KDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR-----PSISVHSSS 149 (518) Q Consensus 78 -~ll~~e~~~i~v~~~~~~--~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~-----i~i~~v~ad 149 (518) .=-..+|.++.+...+.+ -.+...+.++.|+.--+|..+..+.+..+-+-|.++|.-++|..+ ..+.+++|- T Consensus 101 v~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr 180 (524) T protein:vir:10 101 VYEDDTEVVALNLDKSKFSPKIKNMMLDEFNDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPR 180 (524) T ss_pred EecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEeeCCCccccceeeeeeCCc Confidence 001122344444333321 134566777888888889999999999999999999999988543 346666666 Q ss_pred eeEEEEEcCcEEEEEEEEEEEecCc--eEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccc Q lcl|Aclame:pro 150 QFWIDFKNNEPFRFNFFEEIPTSNK--ADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITS 227 (518) Q Consensus 150 ~~~P~~~~g~~~~~~f~~~~~~~~~--~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~ 227 (518) ++-+. +++.+... ..+++ ++-.+-+|.-........... +..-+. T Consensus 181 ~i~~v------------r~i~~~~~~~~~vi~-------------------~~~e~f~Y~~~~~~y~~~g~~--~~~~~~ 227 (524) T protein:vir:10 181 QVQYV------------REIITETEAGTKIVK-------------------GYKEYFIYDTAHESYACDGRM--YEAGTK 227 (524) T ss_pred cceee------------eeeccCCCccchhhc-------------------chhhheeeccCccccccCccc--cCCCcc Confidence 55442 22211111 11111 111112222100000000000 000000 Q ss_pred ccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHH--HHHHHHhccceeee-chh Q lcl|Aclame:pro 228 YLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTV--YMREGEKTKTKIAA-SER 304 (518) Q Consensus 228 ~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~--~~~e~~~g~~ri~v-~~~ 304 (518) + -++.. .++|.. . +-.+.....=+|-+..|+-.+..|=-.-+. +.|-.|+-++|||- +-. T Consensus 228 i----kI~~d----------AI~y~h-S--GL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvG 290 (524) T protein:vir:10 228 I----KIPKA----------AIVYAH-S--GLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTG 290 (524) T ss_pred e----ecchh----------heeeee-c--cceeCCCCceeccchhhhHHHHhhhHHHhhHHHHhhhccccceEEEEecC Confidence 0 00000 111211 0 000000001135555555555555333332 22344555677763 211 Q ss_pred hhccC------------------CCCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHHH Q lcl|Aclame:pro 305 MFRKK------------------VNKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETME 362 (518) Q Consensus 305 ~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~ 362 (518) =|++. -+..++. -.+++.++.+..++. .|+.+ ..|+.+ |..+--.-.+.+. T Consensus 291 nlPk~KAeqYl~~im~k~KNklvYDa~TGe-----v~ddrk~msMlEDyWLpRReGgrg-TEItTL-pGgqnlgem~DV~ 363 (524) T protein:vir:10 291 NMPARKAAEHMQHVMNTMKNRVVYDASTGK-----IKNQQHNMSMTEDYWLQRRDGKAV-TEVDTL-PGADNTGNMEDVR 363 (524) T ss_pred CCCchhHHHHHHHHHHhcCceeEEeCCCCe-----eccchhhhhhHhhhcccccCCCcc-cceeec-cccCCcChHHHHH Confidence 11110 0111111 122344444433322 12222 223332 2232333455666 Q ss_pred HHHHHHHHHhCCCccccccCC-cc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCC Q lcl|Aclame:pro 363 YFAQKAVSKSGYNPATFNLGN-RE---VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRD 438 (518) Q Consensus 363 ~~l~~i~~~~G~s~~tf~~d~-~~---~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~ 438 (518) .+.+.+....+.+.+-+..++ +. .-++||....-+-...+.+.|..+..-+.++++.=|-|-.-. .. .-...- T Consensus 364 YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgii-t~--eew~~i 440 (524) T protein:vir:10 364 WFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGII-TE--DEWNDE 440 (524) T ss_pred HHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-CH--HHHHHH Confidence 777788888888877774331 11 245677666655555666666666666666665544331100 00 000001 Q ss_pred ceeeEEEeCCCCCCCHHHHHHH-------HHHHH--hCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchh Q lcl|Aclame:pro 439 EIRVIIEFPDPMSVNLNELSST-------LNNMN--SALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEA 509 (518) Q Consensus 439 ~~~v~v~f~D~i~~d~~~~~~~-------~~~~~--~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~ 509 (518) ...|.++|...-.-.+...++. ++.+. -+...|.++..+.. -.+||+|.++|-+.|++|....--++|.. T Consensus 441 ~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~I-Lr~tDeei~~~~k~I~~E~k~~~~~~~~~ 519 (524) T protein:vir:10 441 INNIKIEFHRDSYFTELKEAEILERRINMLTMAEPFIGKYISHRTAMKDI-LQMTDEEIEQEAKQIEEESKEARFQDPDQ 519 (524) T ss_pred hhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHH-hccCHHHHHHHHHHHHHHhhcCCCCCCch Confidence 1346677764333333222222 22221 12356888877665 36899999999999999977665555542 Q ss_pred c-cCc Q lcl|Aclame:pro 510 I-GGM 513 (518) Q Consensus 510 ~-~~~ 513 (518) - ..| T Consensus 520 ~~~~f 524 (524) T protein:vir:10 520 EQEDF 524 (524) T ss_pred hhhcC Confidence 2 344 No 239 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=86.87 E-value=0.043 Score=28.10 Aligned_cols=411 Identities=11% Similarity=0.076 Sum_probs=156.5 Q ss_pred CCcCchHHH-----HHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCC--ccccceecCchHHHHH Q lcl|Aclame:pro 1 MGVWSVMTR-----FIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP--TVHDKLMNSGTGNEIV 73 (518) Q Consensus 1 ~~~~~~~~~-----~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~l~~~i~ 73 (518) .--.|.|-. .||. ++ ..+.+..+.+.+ |..++.. ...+-..+......++ T Consensus 2 ~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~----------~~~pp~~~~~La~~~~~n~~v~scI 58 (540) T protein:vir:41 2 FNYHLSIKSLEKYRAIKG--DT-----------DSQALKEDRFEE----------YVEPKVHPLVLLSLLQVNPYHASAC 58 (540) T ss_pred CCcccChhhccchhhhhc--cc-----------cccccccCCCCc----------cccCCCCHHHHHHHHHhcHHHHHHH Confidence 111111111 1110 00 001111111111 1111111 1111112334556677 Q ss_pred HHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCee Q lcl|Aclame:pro 74 VVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQF 151 (518) Q Consensus 74 ~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~ 151 (518) +.+|+-+.+-+..+... +..+...+-.- .-.+...++..+...+..|.+++.+..+ +|++ .+..++|+.+ T Consensus 59 ~~ia~~ia~~~~~i~~~------~~~~~~~lpN~--~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V 130 (540) T protein:vir:41 59 SIKANDILRTGYLIDGD------DGGVEELLRAC--RPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTV 130 (540) T ss_pred HHHHHHHhcCCceEecC------ccchhhhccCC--CCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcce Confidence 88888887776655432 11222221100 1123344445566677779988877655 3554 5777777776 Q ss_pred EEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 152 WIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 152 ~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) -+.- ++.. ++. . ..+...+|+ ..|..... +.... .. T Consensus 131 ~v~~-~~~~----~~~-~-~d~~~~~~~------------------------~~~~~~~~--~~~~~---g~-------- 166 (540) T protein:vir:41 131 RVHR-DGSR----YMQ-T-WDGIHVTYF------------------------KDYRYEGE--VNPDN---GE-------- 166 (540) T ss_pred EEeE-cCce----eEe-e-ecCceeeee------------------------ecccccce--eeccc---cc-------- Confidence 5542 1110 000 0 011111111 11110000 00000 00 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccce---eeechhhhcc Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTK---IAASERMFRK 308 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~r---i~v~~~~l~~ 308 (518) ....+ +.--+.|++...+ .+..+|+|.+..+...+.....+-.-...=|+.|... |.++..+.+. T Consensus 167 ----~~~~~----~~~eViHir~~~~----~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e 234 (540) T protein:vir:41 167 ----DQDGV----GANEIIFIHLPSP----ICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDE 234 (540) T ss_pred ----cceee----cccceEEecCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCch Confidence 00000 0001334554321 1345799999888777665544333333345665532 2233222111 Q ss_pred CCCCCcccc--ccCCC-cchhheee--------ecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 309 KVNKSTDKE--EWSMN-VDEDYFMQ--------FKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPA 377 (518) Q Consensus 309 ~~~~~~~~~--~~~~d-~d~~~~~~--------~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~ 377 (518) ......... .-.+. .-...|.. +-.....+.+++-.++.++....+.++.+..+...+.|....|++|. T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~ 314 (540) T protein:vir:41 235 MELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPY 314 (540) T ss_pred hccchHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 100000000 00000 00000000 00000011122345666777788899999999999999999999999 Q ss_pred ccccCC-ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCC Q lcl|Aclame:pro 378 TFNLGN-REV---KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVN 453 (518) Q Consensus 378 tf~~d~-~~~---TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d 453 (518) .+|+.. +.. ++.+.... -.-.++.-.+..++..|...+ .. . ... ...|.|+..-... T Consensus 315 ~lG~~~~~~~n~sn~eq~~~~--f~~~tL~P~~~~ie~~ln~~L-----------~~---~-~~~--~~~i~f~~~~ll~ 375 (540) T protein:vir:41 315 RLGITDVGPLGGNFAEVARRT--YYESVVRPQQEIVSSVLTDFI-----------QL---K-LDP--GARFVFNEEILME 375 (540) T ss_pred HcCcccCCCCCcccHHHHHHH--HHHHHHHHHHHHHHHHHHHhh-----------hh---c-cCC--ceEEEecchhhcc Confidence 998743 221 22221111 111223333333333332211 00 0 011 2345555443333 Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHcC--CCCHHH------HHHHHHHHHHhcccc---------CCCCchhccCc--- Q lcl|Aclame:pro 454 LNELSSTLNNMNSALAMSVEEKVKLIHP--KWEDEE------IQAEVKRIYLENAIG---------EVPDPEAIGGM--- 513 (518) Q Consensus 454 ~~~~~~~~~~~~~aG~~S~~~~v~~~~~--~~~eee------a~eev~rI~~E~~~~---------~~~dp~~~~~~--- 513 (518) . +.+..+.+++++|+|+.-++.+.+.| ..++.- ...+++.-..+.... ...+|...+.. T Consensus 376 ~-D~~~~~~~lv~~G~lT~NE~Re~L~g~e~gdd~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 454 (540) T protein:vir:41 376 S-EFVHNYALLVQCGVLTPSEVREKLFGLDGGPDMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSE 454 (540) T ss_pred h-HHHHHHHHHHhCCCCCHHHHHHHhCcCcCCCcccccccccccccccccccccCCCCccccccccchhcccccCccccc Confidence 3 34445667889999999997655522 122210 001111000000000 00011000000 Q ss_pred ---CCCCC Q lcl|Aclame:pro 514 ---ETKGG 518 (518) Q Consensus 514 ---~~~gG 518 (518) +.+++ T Consensus 455 ~~~~~~~~ 462 (540) T protein:vir:41 455 SPLEDKKK 462 (540) T ss_pred cccccccc Confidence 00011 No 240 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=85.99 E-value=0.049 Score=27.78 Aligned_cols=418 Identities=7% Similarity=-0.057 Sum_probs=150.3 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhcc----chhhhhhhhhhhhhhhccCCC----Cc---cccceecCchH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVP----DNQKEWSKDSYLTSLWAQGYV----PT---VHDKLMNSGTG 69 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~----~~~~~~~~~~~~~~~w~~~~~----~~---~~~~~~~~~l~ 69 (518) ||+-.-|....+ +.|- ..++.......... +....+........++|.... .+ .....+..+-- T Consensus 1 M~~~~~l~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v 75 (466) T protein:vir:81 1 MRLIDRLLSTRG----AAPR-MSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPV 75 (466) T ss_pred CchhHHHhhccC----cccc-cchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHH Confidence 665443333332 2221 11111111110000 000111111111222222111 01 11222334444 Q ss_pred HHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcC----hHHHHHHHHHHHHhhCCEEEEEEEEC-Ce---- Q lcl|Aclame:pro 70 NEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDN----FDSKSVKIVELAGGSGVSAVKINILN-GR---- 140 (518) Q Consensus 70 ~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~----f~~~~~~~~e~~~a~G~~~~k~~~d~-~~---- 140 (518) ..+++.+|+-|.+=|..+.-.. +....+.....+..++..-+ .....+..+...+..|.+++.+..++ +. T Consensus 76 ~~~i~~Ia~~ia~lp~~~~~~~-~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~ 154 (466) T protein:vir:81 76 FACMLVRQLVFSSVRFRWQRLR-DGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPD 154 (466) T ss_pred HHHHHHHHHhhccCceEEEEec-CCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccc Confidence 5567777777766555443221 11111111112223333211 12222333445556677776654432 11 Q ss_pred -----EEEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccc Q lcl|Aclame:pro 141 -----PSISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTP 215 (518) Q Consensus 141 -----i~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~ 215 (518) +.+..++++.+.+... .+. ...+.|. |.-.+ .... T Consensus 155 ~~g~~~~l~~l~~~~v~~~~~---------------~~~-----------------------~~~~~y~-~~~~~-~~~~ 194 (466) T protein:vir:81 155 WVDVVVEERMVRGGRGELGGG---------------QLG-----------------------WRKVGYL-YTEGG-RQSG 194 (466) T ss_pred cCcceeEEEEecCcceEEEEc---------------CCC-----------------------ceEEEEE-EEecC-cccc Confidence 1122222222222110 000 0001110 11000 0000 Q ss_pred ccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 216 ISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKT 295 (518) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g 295 (518) ... . .+..+ -+.|++.. .|.. +.-.|+|.+.-+...|.....+-.....-|+.| T Consensus 195 ~~~----~---------~~~~~----------dviHir~~-~~~~--d~~~G~s~i~~~~~~i~~~~a~~~~~~~~f~ng 248 (466) T protein:vir:81 195 NES----V---------GFLAE----------DVVHFAPI-PDPL--ASYRGMSWLTPILREIRADQAMSKHQAKFFDNG 248 (466) T ss_pred cce----e---------eeccc----------cEEEEcCC-CCcc--cccccccHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 000 0 00000 12344421 1111 223599999888887765444433333445665 Q ss_pred cceeeechhhhccCCCCCccccccCCCcchhheeeecC-CcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 296 KTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKG-TLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGY 374 (518) Q Consensus 296 ~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~-~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~ 374 (518) -.. ..++.....-........-..-.+.|.+... .--.-.+++..++.++....+.++++..+...+.|....|+ T Consensus 249 ~~p----~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgV 324 (466) T protein:vir:81 249 ATV----NLVIKHNPMADPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETRIAAAAGV 324 (466) T ss_pred CCc----ceEEecCCCCCHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCC Confidence 432 1122211110000000000000111211100 00001122345677777778899999999999999999999 Q ss_pred CccccccCCcc--chHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCC Q lcl|Aclame:pro 375 NPATFNLGNRE--VKATEIWSLQDA-TVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMS 451 (518) Q Consensus 375 s~~tf~~d~~~--~TAtEi~s~~~~-t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~ 451 (518) +|..+|+.... .|..-+...... .-.++.-+...++.+|... .. .......+.+.++..+-+. T Consensus 325 Pp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~-----------L~---~~~~~~~~~~~f~~~~llr 390 (466) T protein:vir:81 325 PPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHV-----------MP---DMGPDVRLWYDADDVPFLR 390 (466) T ss_pred CHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------cC---CcccCcceEEEecchhhhc Confidence 99999875332 232222111211 1223333333333332221 11 1111112334444455566 Q ss_pred CCHHHHHHH-------HHHHHhCCCCCHHHHHHHHcCC------CCHHHHHHHHHHHHHhccc-cCCCCchhccCcCCCC Q lcl|Aclame:pro 452 VNLNELSST-------LNNMNSALAMSVEEKVKLIHPK------WEDEEIQAEVKRIYLENAI-GEVPDPEAIGGMETKG 517 (518) Q Consensus 452 ~d~~~~~~~-------~~~~~~aG~~S~~~~v~~~~~~------~~eeea~eev~rI~~E~~~-~~~~dp~~~~~~~~~g 517 (518) .|.+++++. +..++++|+ .+.+......++ .+.....+ .+..-+.. ..+++| +.+| T Consensus 391 ~d~~~r~~~~~~~~~~~~~~~~~g~-t~nE~r~~~~~gd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~G 460 (466) T protein:vir:81 391 EDEKDAADIQKVRAETINTLITAGY-EPESVVAAVNSGDLRLLKHTGLTSVQ---LLPPGVSASASSDTP------TSGG 460 (466) T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCC-ChhhccccccCCccccccCCCcchhh---hcccccccccCCCCc------ccCC Confidence 777766554 455667775 555544322110 01100000 11111110 111111 2233 Q ss_pred C Q lcl|Aclame:pro 518 G 518 (518) Q Consensus 518 G 518 (518) | T Consensus 461 g 461 (466) T protein:vir:81 461 A 461 (466) T ss_pred C Confidence 3 No 241 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=85.82 E-value=0.05 Score=27.72 Aligned_cols=385 Identities=8% Similarity=-0.016 Sum_probs=155.9 Q ss_pred CCcCchHH------HHHHHHhcC-CCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHH Q lcl|Aclame:pro 1 MGVWSVMT------RFIKGWLNG-KPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIV 73 (518) Q Consensus 1 ~~~~~~~~------~~~~~w~~g-~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~ 73 (518) .=.++-+. +++..|..| .|+...+-+ ..-.++.+. |...+ +-.| +...+ T Consensus 4 ~~l~~e~at~~~~~d~~~~~~~~l~~~~~~il~-----~a~~g~~~~-----y~~l~-----------~D~~--i~s~l- 59 (488) T protein:vir:99 4 PALGREIATSGDGRDITRPFISGLQVPNDSILQ-----RRGGNDLRV-----YEEIL-----------SDAQ--VKTVW- 59 (488) T ss_pred cchhHHHHHHHhhhhhhccccCCCCCCChHHHH-----hhccCCHHH-----HHHHh-----------hChH--HHHHH- Confidence 11111111 111222221 211111000 000011111 11100 0012 23333 Q ss_pred HHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE--CCeE---EEEEEcC Q lcl|Aclame:pro 74 VVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL--NGRP---SISVHSS 148 (518) Q Consensus 74 ~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d--~~~i---~i~~v~a 148 (518) ++.-.-|.+-+-.|. +..+...+.+..+++.+.|.+-+|...+.+.+ .+...|-.++-..|. ++.+ ++.++++ T Consensus 60 ~~rk~av~~~~w~i~-p~~~~~~~~~~ae~v~~~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 137 (488) T protein:vir:99 60 GQRQLAVVSREWKVE-AGGDRPIDQAAAEHLEQQLQRVGWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVRNR 137 (488) T ss_pred HHHHHHHhcCCceEE-cCCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeeecc Confidence 334444556666664 33344456667788999998878887776655 678888888887764 2221 1222222 Q ss_pred CeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccc Q lcl|Aclame:pro 149 SQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSY 228 (518) Q Consensus 149 d~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~ 228 (518) ..|.+. .. +.-++. .+++... +. T Consensus 138 ~~f~~d---------------------------------~~-------~~l~~~---~~~~~~~---------g~----- 160 (488) T protein:vir:99 138 RRFRYD---------------------------------QD-------GGLRLL---TPNNMFE---------GE----- 160 (488) T ss_pred cceeec---------------------------------CC-------CceEEe---ccCCCCC---------cc----- Confidence 211110 00 000000 0110000 00 Q ss_pred cccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeeechhhhc Q lcl|Aclame:pro 229 LHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKTKIAASERMFR 307 (518) Q Consensus 229 ~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~ri~v~~~~l~ 307 (518) . ++. +..++++... ...++|+|.|.+..|.-..--=+..+..|..=++ .|-+-. +.. T Consensus 161 ----~------lp~--~~~~i~~~~~-----~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~-igk---- 218 (488) T protein:vir:99 161 ----P------CPA--PYFWHFSTGA-----DNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTA-VGR---- 218 (488) T ss_pred ----c------ccc--CceEEEEeec-----CCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCcee-eee---- Confidence 0 000 1112222222 1247899999999988654433444444444333 344433 222 Q ss_pred cCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccc-ccHHHHHHHHHHHHHHHHHHhCCCccccccCCc-- Q lcl|Aclame:pro 308 KKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD-FRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR-- 384 (518) Q Consensus 308 ~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~-- 384 (518) .+..+.+...+ ..-.+....+......--.....|+.++.. -..+.|.+.++.+=+.|+..+ ++ +|++.+++ T Consensus 219 y~~~~a~~~ek---~~l~~av~~~~~~~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~i-LG-qtlts~~~~G 293 (488) T protein:vir:99 219 YDDKTATPEDK---AKLLAALHAIQTDSAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKVG-LG-QVASTQGTPG 293 (488) T ss_pred cCCCCCCHHHH---HHHHHHHHHHhcCcEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHHH-hh-hhhccccccc Confidence 11111110000 000011111111111111222335555532 223345555555544554443 33 45544322 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 385 EVKATEIWSLQDATVRKIEKKKRLIQNVYE-QMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNN 463 (518) Q Consensus 385 ~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~-~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~ 463 (518) .....++..+- .-..++.-++.+...+. +++..++.+ | +.. ...+.+.|+..-.+|..+.++.+.+ T Consensus 294 s~a~~~vh~~v--~~d~~~aDa~~i~~tln~~li~~l~~~-----N--~~~----~~~p~~~~~~~e~edl~~~a~~~~~ 360 (488) T protein:vir:99 294 RLGNDDLQADV--RLDLVKADADLICESFNLGPARWLTEW-----N--FPG----AQPPRVYRVIEEPEDITAKAERDEK 360 (488) T ss_pred chhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-----C--cCC----cCCceeEecCCCcccHHHHHHHHHH Confidence 22233332222 23344555566666664 466655443 1 111 1125567887788899999999999 Q ss_pred HHhC-CCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 464 MNSA-LAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 464 ~~~a-G~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++.. |+--.+..+++.+ +...++..+++. ...+ .......+...+ T Consensus 361 l~~~~G~~i~~~~i~e~~-Gip~~~~~~~~~--------~~~~-~~~~~~~~~~~~ 406 (488) T protein:vir:99 361 VFRMSGFRPTRGYVQETY-GVEVESTQAEAT--------APTP-STEFAEGDQPSD 406 (488) T ss_pred HHhhcCCCCCHHHHHHHc-CCCCcccccccc--------cCCC-cccCCCCCCCCC Confidence 9885 8744455666665 354432222110 0000 011111111111 No 242 >protein:vir:345 Length: 663 # NCBI annotation: virion structural protein # Family: family:all:3199 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203459;genbank:gi:15320615;genbank:GeneID:921720 Probab=83.48 E-value=0.068 Score=26.98 Aligned_cols=462 Identities=9% Similarity=-0.025 Sum_probs=184.8 Q ss_pred CCcCchHHHH-------HHHHhcCCCChhhHHhhHHHHhhccchhhhhhhh------hhhhhhhccCCCCccccceecCc Q lcl|Aclame:pro 1 MGVWSVMTRF-------IKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKD------SYLTSLWAQGYVPTVHDKLMNSG 67 (518) Q Consensus 1 ~~~~~~~~~~-------~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~------~~~~~~w~~~~~~~~~~~~~~~~ 67 (518) |-=..+ ++| -|.|. ++|...++.+ ..||+. .|...-|... +...+-+.+|.| T Consensus 1 m~~~~~-~~~~~tpe~la~~W~---------~~I~~a~~~~----~~~h~r~~~~~k~y~~~~~~~~-~~~~r~nl~~sn 65 (663) T protein:vir:34 1 MNESQP-TDFADTPQGWAQRWQ---------EEMSAAREPL----EKWHTQGKEIVKRYRDERDSAH-DAETRWNLFSTN 65 (663) T ss_pred CCcccc-ccchhcchhHHHHHH---------HHHHHHHhcc----chHHHHHHHHHHHhhccccCCC-ccccccchhhhh Confidence 111000 011 13343 2222222211 222221 1222222211 111112233444 Q ss_pred hHHHHHHHHHHHHcCCcceEEeccccccch----HHHHHHHHHHH------hhcChHHHHHHHHHHHHhhCCEEEEEEEE Q lcl|Aclame:pro 68 TGNEIVVVAAEYISGKPLSIDVTGVNGSKD----ENLTKQLKEAL------RIDNFDSKSVKIVELAGGSGVSAVKINIL 137 (518) Q Consensus 68 l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d----~~~~~~l~~vl------~dn~f~~~~~~~~e~~~a~G~~~~k~~~d 137 (518) +-...- + |.+-+|.+.|...-...| ..+.+.+++.+ ++++|+..+...+..++--|-+.+++.+. T Consensus 66 i~~i~P----~-iYar~P~p~V~~rf~d~d~~~~r~ase~leR~~~~~~~~D~~~l~~~~~~~v~d~ll~~rG~~~v~Ye 140 (663) T protein:vir:34 66 IQTQMA----S-LYGQTPKVSVSRRFADADDDVARVASELLERLLNTDIEKDSDTFQQALEYALQDRLLPGFGLCRIRYE 140 (663) T ss_pred HHHHhh----h-hhcCCCcceeeecccCcccchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhccccceEEEEee Confidence 332222 2 234456666654322211 22344444444 55668888888888888888888888662 Q ss_pred C--------------------------------CeEEEEEEcCCeeEE----EEEcCcEEEEEEEEEEEe---------- Q lcl|Aclame:pro 138 N--------------------------------GRPSISVHSSSQFWI----DFKNNEPFRFNFFEEIPT---------- 171 (518) Q Consensus 138 ~--------------------------------~~i~i~~v~ad~~~P----~~~~g~~~~~~f~~~~~~---------- 171 (518) . .++.|++|.-..|.- .|+ +..-++|-...++ T Consensus 141 ~~~~~~~~~~~~~D~~~~~~~a~~~~~~e~~a~E~v~id~v~~~dfl~~pAr~W~--ev~wva~r~~mtk~e~~~rf~~~ 218 (663) T protein:vir:34 141 VEWEEVAGVDAILDEATGAELAAAVPPTQRKAYECVETDYLHWQDVLWSPARVWH--EVRWLAFRNLLDMREFNARFDAD 218 (663) T ss_pred cccchhccccccCCCccccchhcccccchhhcccceeeeeechhhcccchhhccc--cccceeeeccCCHHHHHHhhcCC Confidence 1 146777776666532 121 1112222211111 Q ss_pred cCceEEEEE-EEEeeccc------------ceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccc Q lcl|Aclame:pro 172 SNKADIYYL-VESREIKQ------------WDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNH 238 (518) Q Consensus 172 ~~~~~~y~~-lE~he~~~------------~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (518) +++..-|.+ ......++ ...+.|... +|++|-.-.+. ..+-+..+.. T Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~VwEIWdK~----~~~V~w~~eg~----------------~~~L~~~~p~ 278 (663) T protein:vir:34 219 GSRNLWASVPKVGKPKDGKDGQSCHPWDRAEVWEIWDKG----GRKVDWYVEGY----------------SAVLDTQPDP 278 (663) T ss_pred hhhhhhhhccCcCCccccCCCCCcchhcCcceeEEEecC----CcEEEEEEcCc----------------ceecccCCCC Confidence 000000000 00000000 000111100 11111110000 0111111111 Q ss_pred eeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCccccc Q lcl|Aclame:pro 239 SVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEE 318 (518) Q Consensus 239 ~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~ 318 (518) .-..|..|-++...|+ ...+|=..+++|.-..++++++|..-.++.--.++-+.+-+.|.+.-...+. . T Consensus 279 lgl~~ffPcPrpl~~~-----~~~ds~ipvpd~~~y~~~~~E~n~~t~Rin~l~d~ikv~gvy~~~~g~~i~~------~ 347 (663) T protein:vir:34 279 LGLESFFPCPKPLLAN-----WTTDKVVPRPDFVLAQDLYKEIDLVSTRITLLERAIRVVGVYDKSSGLTIGR------L 347 (663) T ss_pred CCCCCCCCCcccccce-----ecCCCeecCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeccccchhHHH------H Confidence 1111211111111122 2224556899999999999999998888876666677777766332100000 0 Q ss_pred cCCCcchhheeeecC--CcCCCCCCCccceEecccccH---HHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHHHH Q lcl|Aclame:pro 319 WSMNVDEDYFMQFKG--TLDAGAKLNDMIQFMQGDFRD---GSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWS 393 (518) Q Consensus 319 ~~~d~d~~~~~~~~~--~~~~~~~~~~~i~~~~~~ir~---~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s 393 (518) . -+.-++.+..+.. .+...++....|..+.-+--+ .+....-..+..-+++.+|+|--.=|-....+||||-.- T Consensus 348 l-~~a~~n~lvpV~~~~~~~~~gg~~k~I~~~pi~~~~~aI~~l~~~r~qir~d~~qITGiaDi~Rga~~a~ETatAQ~I 426 (663) T protein:vir:34 348 L-SEAAQNDLIPVENWLTFADKGGLRGVVDWFPLEPVVAALTSLRDYRRELVDALHQVTGMADIMRGASDPRETAMAQGV 426 (663) T ss_pred H-HHhhCCCceecchhhhhhhhcCccchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccCcchhhHHHHH Confidence 0 0000011111110 000011111223222111111 111122222333467888888322233334467766554 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------c------------cCCCcCCceeeEEEeCCCCC Q lcl|Aclame:pro 394 LQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNN----------K------------EKAIMRDEIRVIIEFPDPMS 451 (518) Q Consensus 394 ~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~----------~------------~~~~~~~~~~v~v~f~D~i~ 451 (518) ..+-.-.++..++..+++.+.++++...++...-+-. . +.......+.+.|.=+-.+. T Consensus 427 Ksq~gS~RIqe~qdevqR~arDi~ql~AEIl~~~~~~etl~~m~~~elp~~~ei~~~~~~L~n~~~r~~~ldIe~dsT~~ 506 (663) T protein:vir:34 427 KAKFGSIRLQRLQDEVARFASDIQRLKAEVIAEHYDVASILAQANAEFTFDKELAPKAAELIKSRFSMYRVEVKPEAVSL 506 (663) T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCcccchhHHHHHHhcCCCcceeeeeccCCCCc Confidence 5566777889999999999999998887765421100 0 01112345667788888888 Q ss_pred CCHHHHHHHHHHHHhC--------------CCCCHHHHHHHH-------cCCCCHHHHHHHHHHHHHhcccc--CCCCch Q lcl|Aclame:pro 452 VNLNELSSTLNNMNSA--------------LAMSVEEKVKLI-------HPKWEDEEIQAEVKRIYLENAIG--EVPDPE 508 (518) Q Consensus 452 ~d~~~~~~~~~~~~~a--------------G~~S~~~~v~~~-------~~~~~eeea~eev~rI~~E~~~~--~~~dp~ 508 (518) .|+.+..+.+++...+ +-|.......++ ..+..=+.+.+.+..-.+ +++. .+++|. T Consensus 507 ~D~~~eK~~~~E~l~~i~~~~qq~~pl~~q~p~~~p~l~Ellk~~~~~f~~~~qie~ai~~~~~~~e-~aa~~~~~~~pa 585 (663) T protein:vir:34 507 QDFAALRNEKMEVLSGIASFMQGVAPLAQQVPGSAPFLLQMLKWSVSGLRGSSTIEGVLDKAIAAAE-EAQKQAAQQSPA 585 (663) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCChhhhHHHHHHHHHhhhH-HHhhccCCCCcc Confidence 8986666555544331 112212111121 111122333333333222 2221 223332 Q ss_pred hccCcCCCCC Q lcl|Aclame:pro 509 AIGGMETKGG 518 (518) Q Consensus 509 ~~~~~~~~gG 518 (518) .--. ..+-+ T Consensus 586 ~~~~-~~k~~ 594 (663) T protein:vir:34 586 PQQP-DPKVV 594 (663) T ss_pred cchh-hHHHH Confidence 1110 11111 No 243 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=81.53 E-value=0.085 Score=26.46 Aligned_cols=357 Identities=10% Similarity=0.035 Sum_probs=123.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+++.++.|-+.+...++. .+..+ .+. ...+ ....-..+++.+|+-| T Consensus 1 Mg~f~~~~~~~~~~~~~~~~-----~~~~~----~~~-----~~~~------------------~~~~v~~~v~~IA~~i 48 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQ-----RVTAW----QNE-----AVEY------------------TSAFVTNIHNKIANEI 48 (378) T ss_pred CCccccchhcccccccCCcc-----eeeee----ccc-----hhHH------------------HHHHHHHHHHHHHhhh Confidence 99999999887666544431 00000 000 0000 0011222334444444 Q ss_pred cCCcce-EEeccccccchH---HHHHHHHHHHhh--cC--hHHHHHH-HHHHHHhhCCEEEEEEEECCeEEEEEEcCCee Q lcl|Aclame:pro 81 SGKPLS-IDVTGVNGSKDE---NLTKQLKEALRI--DN--FDSKSVK-IVELAGGSGVSAVKINILNGRPSISVHSSSQF 151 (518) Q Consensus 81 ~~e~~~-i~v~~~~~~~d~---~~~~~l~~vl~d--n~--f~~~~~~-~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~ 151 (518) .+=|+. +.-...+...+. ..+.-+..+|.. |. -...|.+ .+..++-.|.+++.+.+++....+ T Consensus 49 A~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~-------- 120 (378) T protein:vir:94 49 TKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGEL-------- 120 (378) T ss_pred hhCceeeEEEcccCcccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceE-------- Confidence 433433 222211111111 111223334432 11 1122333 344455557777665555421111 Q ss_pred EEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 152 WIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 152 ~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) +.++..+.... ++.. .++ | |.+-++-..+ . .++...... T Consensus 121 ~~l~p~~~~~~------~~~~---dii-----H----------------~~~~~~~~~g-----~--s~l~~~~~~---- 159 (378) T protein:vir:94 121 LDLLFADDKKE------YKPE---ELV-----R----------------LTSPFYINED-----T--SILDNALAS---- 159 (378) T ss_pred EEEEecCCeeE------eeee---eeE-----E----------------ecCcCCccch-----h--HHHHHHHHH---- Confidence 11111111000 0000 000 0 0000000000 0 000000000 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCC Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVN 311 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~ 311 (518) +. ..+.++.. ..+ +..+ . .++. +......+++...|+.....-..| ++.| T Consensus 160 --i~--~~~~~~~~-~gi--l~~~--~--------~l~~-~~~~~~~~~~~~~~~~~~~~~~~g--~~~v---------- 209 (378) T protein:vir:94 160 --IQ--TKLEQGKL-RGL--LKIN--A--------FLDI-DNTQEYREKALTTIKNMQEGSSYN--GLTP---------- 209 (378) T ss_pred --HH--HHHhcccc-cce--eeeC--C--------cCCH-HHHHHHHHHHHHHHHHhhcccccc--ccee---------- Confidence 00 00011110 000 0000 0 0000 001111122211111110000000 0000 Q ss_pred CCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHHH Q lcl|Aclame:pro 312 KSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEI 391 (518) Q Consensus 312 ~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi 391 (518) + +++..++.++.+..+.+ +...+...+.|....|++|..+.- |.+|. T Consensus 210 -------------------l--------~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVP~~~l~~-----~~se~ 256 (378) T protein:vir:94 210 -------------------V--------DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG-----TASQE 256 (378) T ss_pred -------------------c--------CCCceEEEccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhcC-----ChHHH Confidence 0 01112344444444444 345566667899999999987731 22232 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhC Q lcl|Aclame:pro 392 WSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNK----EKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSA 467 (518) Q Consensus 392 ~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~----~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~a 467 (518) .. ...+..+|..++..+-.......... .+.......++.++++.....|.+++++.+.+++.+ T Consensus 257 ~~------------~~f~~~tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~ 324 (378) T protein:vir:94 257 QQ------------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENING 324 (378) T ss_pred HH------------HHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhC Confidence 11 11233334444433322221111000 000011123467788888899999999999999999 Q ss_pred CCCCHHHHHHHHcCC-CCHHHHHH-----HHHHH--HHhccccCCCCchhccCcCCC Q lcl|Aclame:pro 468 LAMSVEEKVKLIHPK-WEDEEIQA-----EVKRI--YLENAIGEVPDPEAIGGMETK 516 (518) Q Consensus 468 G~~S~~~~v~~~~~~-~~eeea~e-----ev~rI--~~E~~~~~~~dp~~~~~~~~~ 516 (518) |+|+.-++.+++... ... .++ ....+ ..++..... .....++-|.+ T Consensus 325 G~~T~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~~~~~~~-~~~~~~e~~n~ 378 (378) T protein:vir:94 325 PIFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSRK-DVTSTDETNNQ 378 (378) T ss_pred CCcCHHHHHHHhCCCCCCC--CCeeeecccccccccchhhcCCcC-CCCCCCCCCCC Confidence 999999987776311 111 110 00011 011110000 00001111222 No 244 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=79.89 E-value=0.1 Score=26.06 Aligned_cols=419 Identities=11% Similarity=0.079 Sum_probs=184.8 Q ss_pred CCcCc-hHHHHHHHHhcC-CCCh-hhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWS-VMTRFIKGWLNG-KPNG-SEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~-~~~~~~~~w~~g-~p~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) -|... ...-+.++-|.| ++.. .+.++|.+|+.+.. .++.. .+. ..|+.+.. T Consensus 49 ~~~~~~~~~g~~~~~y~~~e~~~~~~~eLI~~YR~ma~--~pEvd-~Av-----------------------~eIVneaI 102 (524) T protein:vir:98 49 TDLNNQKYAGVFQQFYSGQDPAIQNKEQLINTYRGIMS--YPEVE-NAV-----------------------SEIIDDAI 102 (524) T ss_pred CCCCcceecceeeeeccccccccchHHHHHHHHHHHhh--ccchh-hHH-----------------------Hhhhccee Confidence 11000 011111222321 1111 36777777776532 12210 000 00111110 Q ss_pred -HHHcCCcceEEecccc--ccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe----EEEEEEcCCe Q lcl|Aclame:pro 78 -EYISGKPLSIDVTGVN--GSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR----PSISVHSSSQ 150 (518) Q Consensus 78 -~ll~~e~~~i~v~~~~--~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~----i~i~~v~ad~ 150 (518) .=-..+|.++.++..+ .+-.++..+..+.|+.--+|..+..+.+..+-+-|.++|...+++.+ ..+.+++|-+ T Consensus 103 v~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~~~kGI~ELr~lDPr~ 182 (524) T protein:vir:98 103 VNEQGKDIITMDLAKTNFSKAIQDKIVEEFDNVLNIYDFDNMGARLFRDWYVDSRIYFHKIMHKDESKGIRELRQLDPRC 182 (524) T ss_pred EecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCCCcceeeeeeeCCcc Confidence 0001123334433322 12235567778888888889999999999999999999998877422 3466666666 Q ss_pred eEEEEEcCcEEEEEEEEEEEec--C-ceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccc Q lcl|Aclame:pro 151 FWIDFKNNEPFRFNFFEEIPTS--N-KADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITS 227 (518) Q Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~--~-~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~ 227 (518) +-++.. +.+. + ...++. ++-.+-+|.............-.+- .. T Consensus 183 i~~vr~------------~~~~~~~~~~~v~~-------------------~~~e~f~Y~~~~~~~~~~g~~~~~~--~~ 229 (524) T protein:vir:98 183 MELIRE------------SITETLDGGVKVFR-------------------GYREFFVYSAPKAGYTYNGQIYQAN--QK 229 (524) T ss_pred ceeeee------------ccccccccchhhcc-------------------ceeeeeeeccCCCccccccceecCC--Cc Confidence 644321 1000 0 000110 1111222221000000000000000 00 Q ss_pred ccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHH--HHHHHhccceeee-chh Q lcl|Aclame:pro 228 YLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVY--MREGEKTKTKIAA-SER 304 (518) Q Consensus 228 ~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~--~~e~~~g~~ri~v-~~~ 304 (518) + -++.+ .++|..-- -.+....+ +|-+..|+-.+..|=-.-+.+ .|-.|+-++|||- +-. T Consensus 230 i----kI~~d----------AIvy~hSG---L~d~~~~i-isyLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvG 291 (524) T protein:vir:98 230 I----KIPRS----------AIVYAHSG---LEDCSNNI-IGYLHRAVKPANQLRLLEDAMVIYRITRAPERRVFYIDVG 291 (524) T ss_pred e----eechh----------heeeeccC---cccCCCCe-eeehhHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecC Confidence 0 01111 11221100 00000001 355556665555553333322 2344555677763 111 Q ss_pred hhccC------------------CCCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHHH Q lcl|Aclame:pro 305 MFRKK------------------VNKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETME 362 (518) Q Consensus 305 ~l~~~------------------~~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~ 362 (518) =|++. -+..++. -.+++.++.+..++. .|+.+ ..|+.+ |..+--.-.+.+. T Consensus 292 nlPk~KAeqYl~~im~k~kNklvYDa~TGe-----vrddrk~msMlEDyWLpRReGgrg-TEItTL-pggqnlgem~DV~ 364 (524) T protein:vir:98 292 QMGGNKATQYVNNIAQGLKNRVVYDARTGT-----VKNQQNNLSMTEDYWLMRRDGKAI-TEVSTL-PGGQNFSDMDDIK 364 (524) T ss_pred CCCchhHHHHHHHHHHhcCceeEeeccCce-----eeccccccchhhhhcccccCCCCc-cceeec-cccCCcChHHHHH Confidence 11110 0111111 123344444433332 12222 223322 3333233456666 Q ss_pred HHHHHHHHHhCCCccccccCCc--c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCC- Q lcl|Aclame:pro 363 YFAQKAVSKSGYNPATFNLGNR--E-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRD- 438 (518) Q Consensus 363 ~~l~~i~~~~G~s~~tf~~d~~--~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~- 438 (518) .+.+.+....+.+.+-+..+++ . .-++||....-+-...+.+.|..+..-+.++++.=|-| ++.... T Consensus 365 YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLil---------Kgiit~e 435 (524) T protein:vir:98 365 WFNRKLYEALRVPLSRMPRDDGGMQIGGGGEITRDELKFSKFIRTLQIQFSPVLSDPLKTNLIA---------KKIITED 435 (524) T ss_pred HHHHHHHHHhCCCceeccCCCCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hcCCCHH Confidence 7777888888888777753321 1 13566666555555566666666666666665554333 222111 Q ss_pred -----ceeeEEEeCCCCCCCHHHHHH-------HHHHHH--hCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCC Q lcl|Aclame:pro 439 -----EIRVIIEFPDPMSVNLNELSS-------TLNNMN--SALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEV 504 (518) Q Consensus 439 -----~~~v~v~f~D~i~~d~~~~~~-------~~~~~~--~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~ 504 (518) ...|.++|...-.-.+...++ .++.+. -+...|.++..+.. -..||+|.+++-+.|++|....-- T Consensus 436 ew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~I-Lr~tDeei~~~~k~I~~E~k~~~~ 514 (524) T protein:vir:98 436 EWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVEGVVGKYVSHKYIMKEI-LRMSDEDIDEQAKLIEEESKEERF 514 (524) T ss_pred HHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHH-hccCHHHHHHHHHHHHHHHhCCCC Confidence 123677776433333322222 222222 12367888876665 368999999999999999776655 Q ss_pred CCch-hccCc Q lcl|Aclame:pro 505 PDPE-AIGGM 513 (518) Q Consensus 505 ~dp~-~~~~~ 513 (518) ++|. ..+.| T Consensus 515 ~~p~~e~~~f 524 (524) T protein:vir:98 515 KNPEAEEENF 524 (524) T ss_pred cCCccccccC Confidence 5553 33445 No 245 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=76.09 E-value=0.14 Score=25.28 Aligned_cols=402 Identities=10% Similarity=-0.010 Sum_probs=154.7 Q ss_pred CCc------------------CchHHHHHHHHh----cCCCChhhHHhhHHHHh-hccchhhhhhhhhhhhhhhccCCCC Q lcl|Aclame:pro 1 MGV------------------WSVMTRFIKGWL----NGKPNGSEPELIPKYLP-LVPDNQKEWSKDSYLTSLWAQGYVP 57 (518) Q Consensus 1 ~~~------------------~~~~~~~~~~w~----~g~p~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~ 57 (518) |+. +..+...=+.|- +|... .+...-++ .-.++... +..++-.+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp----~~l~~il~~a~~gd~~~------~~~L~~~m--- 67 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTP----AKLAHILIEAEQGHLQA------QAELFMDM--- 67 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCH----HHHHHHHHhhhCCCHHH------HHHHHHHH--- Confidence 100 000000001110 12111 11000000 00011110 00111000 Q ss_pred ccccceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhc-ChHHHHHHHHHHHHhhCCEEEEEEE Q lcl|Aclame:pro 58 TVHDKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRID-NFDSKSVKIVELAGGSGVSAVKINI 136 (518) Q Consensus 58 ~~~~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn-~f~~~~~~~~e~~~a~G~~~~k~~~ 136 (518) ..+--| +...+- +--.-|.+-+..|.-...+...++...+++++.+.+- +|...+ ..+..+...|-.++-..| T Consensus 68 --~e~D~~--i~s~l~-~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i-~~~lda~~~G~s~~Ei~w 141 (528) T protein:vir:10 68 --EERDAH--LFAEMS-KRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLM-LDCMDGVGHGYSAIELDW 141 (528) T ss_pred --HhhChH--HHHHHH-HHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHH-HHHHhhhhhcceeEEEEE Confidence 000112 233333 3333444555555544344455566777888888764 466544 445668888888887766 Q ss_pred EC--CeE---EEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCC Q lcl|Aclame:pro 137 LN--GRP---SISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGD 211 (518) Q Consensus 137 d~--~~i---~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~ 211 (518) .. +.. .+.++++..|.. ... +..++ +.+.+.. T Consensus 142 ~~~~g~~~~~~~~~r~~~~f~~------------------------------~~~----------~~~~l---~~~~~~~ 178 (528) T protein:vir:10 142 SLQGREWLPQAFDHRPQSWFQL------------------------------NPD----------DQDEL---RLRDNSI 178 (528) T ss_pred eecCCceeEEEeeeecccceee------------------------------ccC----------CCcEE---eccCCCC Confidence 42 221 111222111110 000 00000 0011100 Q ss_pred ccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 212 KTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMRE 291 (518) Q Consensus 212 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e 291 (518) . ++. ++ . .-|+++... ...++|+|.|.+..|.-..--=+..+..|+.= T Consensus 179 ~---------g~~---------------l~-~--~k~iv~~~~-----~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f 226 (528) T protein:vir:10 179 A---------GEV---------------LQ-P--FGWIMHKPR-----SRSGYVARSGLFRVLAWPYLFKHYSTADLAEM 226 (528) T ss_pred C---------cee---------------ec-C--CCeEEEeec-----CCCCCccccchHHHHHHHHHHHHhhHHHHHHH Confidence 0 000 00 0 112333222 23467888888888876554444444555543 Q ss_pred HHh-ccceeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccc-ccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 292 GEK-TKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD-FRDGSYRETMEYFAQKAV 369 (518) Q Consensus 292 ~~~-g~~ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-ir~~~~~~~i~~~l~~i~ 369 (518) ++. |-+-++. . .. .+.....+ +.-.+....+......--.....|+.++.. ...+.|.+.++.+=+.|+ T Consensus 227 ~E~yG~P~~ig-k----y~-~~a~~~ek---~~L~~al~~i~~~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Is 297 (528) T protein:vir:10 227 LEIYGLPIRLG-K----YP-PGTPDEEK---VTLLRAVTGLGHAAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMS 297 (528) T ss_pred HHHcCCCeEEE-e----cC-CCCCHHHH---HHHHHHHHHHhhCcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHH Confidence 333 4443332 1 11 01010000 000011111111111111122335555432 334445555555555555 Q ss_pred HHhCCCccccccC-Cccch----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCCcCCceeeE Q lcl|Aclame:pro 370 SKSGYNPATFNLG-NREVK----ATEIWSLQDATVRKIEKKKRLIQNVYE-QMLWDFLYLLTGGTNNKEKAIMRDEIRVI 443 (518) Q Consensus 370 ~~~G~s~~tf~~d-~~~~T----AtEi~s~~~~t~~t~~~~~~~~~~~l~-~li~~il~l~~~~~~~~~~~~~~~~~~v~ 443 (518) ..+ ++ +|++.+ +..++ ..+|..+- .-..++.-.+.+...|. +++..++.+ .+........-+. T Consensus 298 k~i-LG-qtlTs~~~~g~~gS~Alg~vh~~v--~~di~~aDa~~i~~tln~~li~~l~~~-------N~~~~~~~~~~p~ 366 (528) T protein:vir:10 298 KAI-LG-GTLTSQTSESGGGAYALGQVHNEV--RHDLLAADARQLAATLSRDLLWPLLVL-------NRSGNLDARRAPR 366 (528) T ss_pred HHH-hh-hhhhccccccccchhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCCCCCccccce Confidence 555 44 566443 21222 22332111 22234455556666664 566665543 1122222233467 Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhCCC-CCHHHHHHHHcCCCCHHHHHHHHHHHH--HhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 444 IEFPDPMSVNLNELSSTLNNMNSALA-MSVEEKVKLIHPKWEDEEIQAEVKRIY--LENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 444 v~f~D~i~~d~~~~~~~~~~~~~aG~-~S~~~~v~~~~~~~~eeea~eev~rI~--~E~~~~~~~dp~~~~~~~~~gG 518 (518) +.|+..-.+|..+.++.+++++..|+ ++.. ++++.++ ....+..+++..-. ...+......+.....+....+ T Consensus 367 ~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~-~i~e~~g-ip~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (528) T protein:vir:10 367 LVFDLKDRADLAAMATSLPPLVKLGVQVPVN-WVQEQLG-IPLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQVIG 442 (528) T ss_pred EEecCCCcccHHHHHHHHHHHHhCCCCCCHH-HHHHHhC-CCCCCCCcccccCCCcccccccCccccccccccccccc Confidence 88999899999999999999999998 5655 4555553 43222112221100 0000000000011111111111 No 246 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=74.82 E-value=0.15 Score=25.04 Aligned_cols=357 Identities=11% Similarity=0.011 Sum_probs=117.7 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+|+.++.|=..+...++. .+. . |.+.. .. +.......+++.+|+-| T Consensus 1 Mg~f~~~~~~~~~~~~~~~~-----~~~-----------~----------~~~~~---~~---~~~~~v~~~i~~Ia~~i 48 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNNDTQ-----RVT-----------A----------WQNEA---VE---YTSAFVTNIHNKIANEI 48 (378) T ss_pred CccchhhhhhhcccccCCcc-----eee-----------e----------cccch---hh---HHHHHHHHHHHHHHhhh Confidence 99999988764334322221 000 0 00000 00 00011112333333333 Q ss_pred cCCcceE-Eeccccccch---HHHHHHHHHHHhh--c---ChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCee Q lcl|Aclame:pro 81 SGKPLSI-DVTGVNGSKD---ENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQF 151 (518) Q Consensus 81 ~~e~~~i-~v~~~~~~~d---~~~~~~l~~vl~d--n---~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~ 151 (518) ..=+..+ .-...+...+ +....-+..+|.. | ....-.+..+...+-.|.+++.+.+++....+ T Consensus 49 A~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~-------- 120 (378) T protein:vir:16 49 TKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGEL-------- 120 (378) T ss_pred hhCceeEEEEcccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceE-------- Confidence 3223221 1111111111 1112223444432 1 11222223344555567777666555421111 Q ss_pred EEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccc Q lcl|Aclame:pro 152 WIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) Q Consensus 152 ~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~ 231 (518) +.++.++.... ++.. .++ | |.+-++-. .+ . .++...... T Consensus 121 ~~l~~~~~~~~------~~~~---dii-----h----------------~r~~~~~~-~~--~----s~l~~~~~~---- 159 (378) T protein:vir:16 121 LDLLFADDKKE------YKPE---ELV-----R----------------LTSPFYIN-ED--T----SILDNALAS---- 159 (378) T ss_pred EEEEecCCeeE------eccc---ceE-----E----------------ecCccCcc-ch--h----HHHHHHHHH---- Confidence 11111110000 0000 010 0 00000000 00 0 000000000 Q ss_pred ccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---cc--ceeeechhhh Q lcl|Aclame:pro 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK---TK--TKIAASERMF 306 (518) Q Consensus 232 ~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~---g~--~ri~v~~~~l 306 (518) +.. .+.++. +..+ +..+ + .++. +. .++.-.+|...++. |. .++.|. T Consensus 160 --i~~--~~~~~~-~~g~--l~~~--~--------~l~~-----~~---~~~~~~~~~~~~~~~~~~~~~g~~~vl---- 210 (378) T protein:vir:16 160 --IQT--KLEQGK-LRGL--LKIN--A--------FLDI-----DN---TQEYREKALTTIKNMQEGSSYNGLTPV---- 210 (378) T ss_pred --HHH--HHhcCc-ccee--eEeC--C--------cCCH-----HH---HHHHHHHHHHHHHHhhcccccccceEc---- Confidence 000 011111 1111 1110 0 0110 01 11112222221111 10 011110 Q ss_pred ccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccc Q lcl|Aclame:pro 307 RKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV 386 (518) Q Consensus 307 ~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~ 386 (518) +++..++.++.+-.+.+ +..+..+.+.|....|++|..+.- T Consensus 211 ---------------------------------~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~g----- 251 (378) T protein:vir:16 211 ---------------------------------DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG----- 251 (378) T ss_pred ---------------------------------CCCceEEEccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhcC----- Confidence 01112333343333444 344556667899999999988731 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNS 466 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~ 466 (518) |.+|-.. ..-...++.-....++.+|..-+-.--+... +........+.++++.....|.+++++.+.+++. T Consensus 252 ~~~e~~~-~~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~-------~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~ 323 (378) T protein:vir:16 252 TASQEQQ-IYFYNSTIIPLLIQLEKELTYKLISTNRRRV-------VKGNLYYERIIVDNQLFKFATLKELIDLYHENIN 323 (378) T ss_pred CchHHHH-HHHHHHHHHHHHHHHHHHHHhhcCChhhhhh-------hhhcccccceeeccchhhhcCHHHHHHHHHHHHh Confidence 2223111 1111122333333333333221100000000 0001112346778888899999999999999999 Q ss_pred CCCCCHHHHHHHHcCCCCHHHHHH-----HHHHHH--HhccccCCCCchhccCcCCC Q lcl|Aclame:pro 467 ALAMSVEEKVKLIHPKWEDEEIQA-----EVKRIY--LENAIGEVPDPEAIGGMETK 516 (518) Q Consensus 467 aG~~S~~~~v~~~~~~~~eeea~e-----ev~rI~--~E~~~~~~~dp~~~~~~~~~ 516 (518) +|+|+.-++.+++...--+ ..++ -...+. .++..... +....++-|.+ T Consensus 324 ~G~~T~NE~R~~~g~~p~~-ggD~~~~~~n~~~~~~~~~~~~~~~-~~~~~~e~~ne 378 (378) T protein:vir:16 324 GPIFTQNQLLVKMGEQPIE-GGDVYIANLNAVAVKNLSDLQGSRK-DVTSTDETNNQ 378 (378) T ss_pred CCCcCHHHHHHHhCCCCCC-CCCeEeeccccccccchhhhcCccC-CCCCCCCCCCC Confidence 9999999987776311111 1110 011110 00000000 00011111222 No 247 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=73.02 E-value=0.18 Score=24.73 Aligned_cols=371 Identities=12% Similarity=0.028 Sum_probs=146.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCc---cccceecCchHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPT---VHDKLMNSGTGNEIVVVAA 77 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~~l~~~i~~~~A 77 (518) ||+.+.+.... +. +...+.... ...+|+. ...+ .....+..+---.+++.+| T Consensus 1 Mg~f~~~~~~~-------~~----------------~~~~~~~~~-~~~~~~~-~~~~~~v~~~~~l~~~~v~~~i~~ia 55 (382) T protein:vir:48 1 MPIFNLATESP-------PD----------------NQGGFFDVV-DSDFLAS-LKGNEWVSAETALRNSDLFSIINQLS 55 (382) T ss_pred CccccccccCC-------cc----------------cccccccch-hhhcccc-ccCCcccchHhhhccHHHHHHHHHHH Confidence 88876543321 00 000000000 0001100 0000 0011111112223556666 Q ss_pred HHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeEEEE Q lcl|Aclame:pro 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFWIDF 155 (518) Q Consensus 78 ~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~P~~ 155 (518) +-+.+=| |.+-... ...+.+.-+. .-....-++..+...+-.|.+++.+.-+ +|++ .+..++++.+-+.. T Consensus 56 ~~ia~~~--~~~~~~~---~~~L~~~PN~---~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~ 127 (382) T protein:vir:48 56 NDLATVK--LITSRKK---LQGIVDNPSN---NANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNR 127 (382) T ss_pred HhhccCc--eeeecch---hhhhhhhcCC---CCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEE Confidence 6654434 3332211 1111111111 0012233334444566668777776554 3443 56666777665542 Q ss_pred E-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccC Q lcl|Aclame:pro 156 K-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDI 234 (518) Q Consensus 156 ~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 234 (518) . +|. .++|.. + ..+..... ...+ T Consensus 128 ~~~~~----------------~~~y~~--------------------~-----~~~~~~~~------~~~~--------- 151 (382) T protein:vir:48 128 LDNKD----------------GIYYNI--------------------T-----FDDPRIPP------KQHV--------- 151 (382) T ss_pred cCCCC----------------eEEEEE--------------------E-----ecCccccc------eeEE--------- Confidence 1 111 111110 0 00000000 0000 Q ss_pred cccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc-ceeeechhhhccCCCCC Q lcl|Aclame:pro 235 QLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK-TKIAASERMFRKKVNKS 313 (518) Q Consensus 235 ~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~-~ri~v~~~~l~~~~~~~ 313 (518) ... -+.|++.... .+..+|+|.+..+...++....+-.....-|+.|- ++-++- ...... T Consensus 152 ~~~----------evih~~~~~~----~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~-----~~~~~~ 212 (382) T protein:vir:48 152 PQN----------DVLHFRLLSV----DGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILK-----IKGGGL 212 (382) T ss_pred cCc----------cEEEecCCCC----CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE-----eCCCCC Confidence 000 0334443321 13457999999888888655444443444456543 333331 111100 Q ss_pred ccccccCCCcchhheeeec---CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHHH Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFK---GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATE 390 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~---~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtE 390 (518) ...... . .+.+.... +..- --+++..++.++....+.++.+..+...+.|....|++|..+|..+...+..+ T Consensus 213 ~e~~~~---~-~~~~~~~~~n~g~~~-vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~~ 287 (382) T protein:vir:48 213 LDFKTK---L-SRSRQAMKQMQGGPL-VLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQQSSLE 287 (382) T ss_pred hHHHHH---H-HHHHHhhccCCCCee-EcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHH Confidence 000000 0 00000000 0000 01122346777777788899999999999999999999999986443322111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCC Q lcl|Aclame:pro 391 IWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAM 470 (518) Q Consensus 391 i~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~ 470 (518) - + ...++.+|..++..+............ +......+ -.+.......+.++..+|++ T Consensus 288 ~----~---------~~~~~~~l~p~~~~i~~~l~~~l~~~~------~~~~~~~~----~~~~~~~~~~~~~l~~~g~~ 344 (382) T protein:vir:48 288 M----S---------SDLYSKAVSRYLRPFLSELSQKLSCDV------DADIFPAV----DPTGSNYISRINSLVKTGTL 344 (382) T ss_pred H----H---------HHHHHHHHHHHHHHHHHHHHHHhcChh------hhhhhhhh----ccchhHHHHHHHHHhhcCcc Confidence 1 1 112233333333333222221111000 01111111 12334455566677888999 Q ss_pred CHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCC Q lcl|Aclame:pro 471 SVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKG 517 (518) Q Consensus 471 S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~g 517 (518) ++-++.+.+. .++...++. + .|+. .+ |...|.-+... T Consensus 345 t~~e~r~~l~~~g~~~~~~~----~--~~~~--~~--~~~GGd~~~~~ 382 (382) T protein:vir:48 345 AQNQGLYILQQAEILPKELP----N--GENP--NS--TLKGGEEDGQD 382 (382) T ss_pred CHHHHHHHHhhCCCCCcchh----h--hhcC--CC--CCCCCCCCCCC Confidence 9988876541 123222221 1 1111 01 11111111111 No 248 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=72.41 E-value=0.18 Score=24.63 Aligned_cols=383 Identities=9% Similarity=0.031 Sum_probs=124.1 Q ss_pred chHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHHcCCc Q lcl|Aclame:pro 5 SVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYISGKP 84 (518) Q Consensus 5 ~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll~~e~ 84 (518) |.+..+|+.|....... . ... + + .+|...... .....+...--..+++.+|+-|..-| T Consensus 1 Mg~~~~~~~~~~~~~~~-----~----~~~--~---~-------~~~~~~~~~-~~~~~l~~~~v~~~v~~Ia~~ia~~p 58 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRT-----L----NLT--D---T-------VWCSIPSEK-LKELSIKKWAIDSCANKIANTLSCAE 58 (395) T ss_pred CchHHHHHhhhcccccc-----c----ccc--c---c-------hhhcccccc-chhhhhhhHHHHHHHHHHHHHHhhCc Confidence 55566777776433211 0 000 0 0 011100000 00011111111223333333333223 Q ss_pred ceEEeccccccchHHHHHHHHHHHhh--cCh--HHHHHHHHHHHHhh-CCEEEEEEEECCeEEEEEEcCCeeEEEEEcCc Q lcl|Aclame:pro 85 LSIDVTGVNGSKDENLTKQLKEALRI--DNF--DSKSVKIVELAGGS-GVSAVKINILNGRPSISVHSSSQFWIDFKNNE 159 (518) Q Consensus 85 ~~i~v~~~~~~~d~~~~~~l~~vl~d--n~f--~~~~~~~~e~~~a~-G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~ 159 (518) |.+-..+...+ .-+..+|.. |.+ ...|.+.+...+.+ |.+++.+ .++++.+ ++.+...... T Consensus 59 --~~~~~~~~~~~----~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~--~~~~~~~----~~~~~~~~~~-- 124 (395) T protein:vir:40 59 --VLTYEKGEEVR----KKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFM--QDEYIYV----ADSFTKNDKS-- 124 (395) T ss_pred --eeeccCCcccc----chHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEE--ecCceee----cCCccccccc-- Confidence 33322221111 122233321 111 12344444444444 5555433 2222211 1111111000 Q ss_pred EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce Q lcl|Aclame:pro 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) Q Consensus 160 ~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (518) .....+. .+...+. .+.+ ......|-|--|-..+.... +. . + ............... T Consensus 125 ~~~~~~~-~v~~~~~--~~~~--------------~~~~~evih~r~~~~~~~~~-~~-~-l---~~~~~~~~~~~~~~~ 181 (395) T protein:vir:40 125 LYENTYT-EVTLKDL--TLKK--------------EFKESEVLHLTLNNESIKSI-ID-G-F---YLLYGDLLTAAVNKY 181 (395) T ss_pred cccceee-eeeecCc--eeee--------------eeccccEEEeecCCCCcccc-ch-h-H---HHHHHHHHHHHHHHH Confidence 0000110 0000000 0000 00111122211211111100 00 0 0 000000000000000 Q ss_pred eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcccccc Q lcl|Aclame:pro 240 VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEW 319 (518) Q Consensus 240 ~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~~~ 319 (518) ...+..++... +.. +-..+ .+..+.+-+.|.+...-......+++|.+ T Consensus 182 ~~~~~~~~~l~-~~~----------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~vl~---------------- 229 (395) T protein:vir:40 182 KKLNSRKIIVK-LKA----------MFGQT-----PEAEEKLRLMLSERMKKFLAEGDSALPVE---------------- 229 (395) T ss_pred HhcCCCCceEE-Eec----------ccCCC-----HHHHHHHHHHHHHHHHHhhccCCceeecC---------------- Confidence 01111111111 110 00111 12222222222222111111111121100 Q ss_pred CCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHH---HHHHHHHHHHhCCCccccccCCccchHHHHHHHHH Q lcl|Aclame:pro 320 SMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETM---EYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQD 396 (518) Q Consensus 320 ~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i---~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~ 396 (518) ++..++.++.+..+.++.+.- +.+.+.|....|++|+.++.+... ..+. . T Consensus 230 ---------------------~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~~~~sn--~e~~---~- 282 (395) T protein:vir:40 230 ---------------------DGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAKGDTVG--LSEQ---V- 282 (395) T ss_pred ---------------------CCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCcC--HHHH---H- Confidence 011244444444455555432 334567888899999988532111 1111 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHH Q lcl|Aclame:pro 397 ATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKV 476 (518) Q Consensus 397 ~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v 476 (518) ...++.+|..++..+.......... .......+.+.++++.-+..|.+++++.+.+++.+|+|+.-++. T Consensus 283 ---------~~f~~~~L~P~~~~ie~~l~~kLl~--~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R 351 (395) T protein:vir:40 283 ---------NSFLMFSINPIAEMFTDEGNRKFYG--RDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNL 351 (395) T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhcCC--hhhhcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHH Confidence 1122333444443332222211100 00111234678888888899999999999999999999999988 Q ss_pred HHHc-CCCCHHHHHHHHHHHHHh-ccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 477 KLIH-PKWEDEEIQAEVKRIYLE-NAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 477 ~~~~-~~~~eeea~eev~rI~~E-~~~~~~~dp~~~~~~~~~gG 518 (518) +++. |-.++.+.++-. +... +......+....|+-+...| T Consensus 352 ~~~g~~pi~~~~gD~~~--~~~n~~~~~~~~~~~kgge~~~~~~ 393 (395) T protein:vir:40 352 RMIGREPVMSPETQERF--VTKNYAPLGENEEDLKGGDINENKG 393 (395) T ss_pred HHhCCCCCCCCCCceee--eccccccccccccccCCCCCCCCcC Confidence 7763 222222222110 0000 11111111111222222222 No 249 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=70.07 E-value=0.21 Score=24.25 Aligned_cols=378 Identities=10% Similarity=-0.003 Sum_probs=123.8 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+-+-+. .+.+. ....+. ++...........++..--..+++.+|+-+ T Consensus 1 MGlf~~~~-------~~~~~--~~~~~~----------------------~~~~~~~~~~~~~~~~~~v~~~I~~ia~~i 49 (395) T protein:vir:98 1 MGILDFFS-------FKKSG--TLSDDD----------------------SGSTTSEKLTNVVLKEDALYKCVNYLARII 49 (395) T ss_pred Ccchhhhc-------CCCcc--cccccc----------------------cchhhhhhcchhhhhhHHHHHHHHHHHHHH Confidence 88854321 11110 000000 000000000111111111222344455544 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhh--cC--hHHHHHHH-HHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRI--DN--FDSKSVKI-VELAGGSGVSAVKINILNGRPSISVHSSSQFWIDF 155 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n~--f~~~~~~~-~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~ 155 (518) .+=|..+.-.+.+...+.. +..+|.. |. -...+.+. +...+-.|-+++.|..+.+ + +.++.+.... T Consensus 50 A~lp~~~~~~~~~~~~~~~----~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~-~----~~~~~~~~~~ 120 (395) T protein:vir:98 50 SKSTFRLKTPEKLTENQKD----WLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKG-I----YVADSFTQDK 120 (395) T ss_pred hhCceeEEecCCcccccch----HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCc-e----ecCCcccccc Confidence 4434333211111111111 2233321 11 11223333 4444445666655543321 1 1111111110 Q ss_pred EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 156 KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 156 ~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) . .. ..+|+.... ..|.+.. .|. T Consensus 121 ~---~~-------------~~~~~~~~~-------------~~~~~~~-~~~---------------------------- 142 (395) T protein:vir:98 121 K---IS-------------GSQFKVSRV-------------QGQTYEK-TFT---------------------------- 142 (395) T ss_pred c---cc-------------Ccccceeee-------------cCceeee-Eec---------------------------- Confidence 0 00 000100000 0010100 000 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHH-HHHH-HHHHHHHHHhccceeeechhhhccCCCCC Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFA-VDYF-FTVYMREGEKTKTKIAASERMFRKKVNKS 313 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~-lD~~-~s~~~~e~~~g~~ri~v~~~~l~~~~~~~ 313 (518) +. -+.|++....+. .+.+.+.+..+..++.. ++.. ...-.+-+..+...-.++........... T Consensus 143 ~~----------evih~k~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (395) T protein:vir:98 143 FD----------QVIYLKNDNSDL----MSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQ 208 (395) T ss_pred Cc----------cEEEecCCCCCc----cccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHH Confidence 00 012333221111 11122222222222111 1111 00001111111111111111100000000 Q ss_pred ccccccCCCcchhheeeecCCcC--CCCCCCccceEec------ccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc Q lcl|Aclame:pro 314 TDKEEWSMNVDEDYFMQFKGTLD--AGAKLNDMIQFMQ------GDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE 385 (518) Q Consensus 314 ~~~~~~~~d~d~~~~~~~~~~~~--~~~~~~~~i~~~~------~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~ 385 (518) ..... ..-+..+.+...... .-...+..++.++ ....+.++.+..+...+.|....|++|..++.+. T Consensus 209 ~~~~~---~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~~~-- 283 (395) T protein:vir:98 209 SKSDK---DFFKRTVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHGDI-- 283 (395) T ss_pred HHHHH---HHHHHHHhhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCc-- Confidence 00000 000000111000000 0000111222232 1345668888888888999999999999986221 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) +..| ... ...++.+|...+..+-....... +.. ......+.|+|+..+..|.+++++.+.+++ T Consensus 284 -sn~e--~~~----------~~f~~~tl~P~~~~ie~~l~~kl---l~~-~~~~~g~~f~~~~l~~~d~~~~~~~~~~~~ 346 (395) T protein:vir:98 284 -ADNQ--KNY----------ELLLEGPIESLITNIVDGLEYAI---FDK-SETLQGSFIKVTGLKNYDLFSISNQADKLI 346 (395) T ss_pred -ccHH--HHH----------HHHHHHHHHHHHHHHHHHHHHhc---CCh-hhhcCcceeeehhhhccCHHHHHHHHHHHH Confidence 1111 111 11222333333333222221111 010 000122457888888999999999999999 Q ss_pred hCCCCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 466 SALAMSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+|+|+.-++.+++. |-.++++.++-+. .-+ ..+-....|+-+.+.| T Consensus 347 ~~G~~T~NE~R~~~g~~Pi~~~~gD~~~~---~~n---~~~~~~~gge~~~~~~ 394 (395) T protein:vir:98 347 SSGFVFIDEVREEIGLPELPDGLGKVLYM---TKN---YESVLERGGEVDEEVE 394 (395) T ss_pred hCCCcCHHHHHHHhCCCCCCCCCCceeee---ccc---ceecccccCCCCCCCC Confidence 999999999887762 2233433332211 001 1111111222223333 No 250 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=69.01 E-value=0.23 Score=24.09 Aligned_cols=210 Identities=8% Similarity=0.002 Sum_probs=89.7 Q ss_pred EEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccceeecCCCcceEEEecCcccCcc Q lcl|Aclame:pro 181 VESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTR 260 (518) Q Consensus 181 lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~ 260 (518) +..+ ..+.+..++ +..... ..+. ...+. .. -+.+++.+.+ T Consensus 1 ~r~~----------~dg~~~y~~---~~~~~~-~~g~-------------------~~~~~-~~---eilH~r~~~~--- 40 (219) T protein:vir:98 1 MRVC----------KDGNYKYLM---KKSLYD-TKSE-------------------IYEYN-KN---DVIFIKLYDP--- 40 (219) T ss_pred Ccee----------ecCeEEEEE---ecceec-CCce-------------------eEEec-cc---cEEEecCCCC--- Confidence 1111 112221111 110000 0000 00000 00 1245554321 Q ss_pred ccCCC-CCcchhhhhHHHHHHHHHHHHHHHHHH-Hhccc-ee--eechhhhccCCCCCccccccCCC---cchhheeeec Q lcl|Aclame:pro 261 YPHLN-LGESDLSQCTNYLFAVDYFFTVYMREG-EKTKT-KI--AASERMFRKKVNKSTDKEEWSMN---VDEDYFMQFK 332 (518) Q Consensus 261 ~~~sP-lG~S~~~~~~~~i~~lD~~~s~~~~e~-~~g~~-ri--~v~~~~l~~~~~~~~~~~~~~~d---~d~~~~~~~~ 332 (518) .++ +|+|.+..+...+. ++.+-.++...| +.|.. .- .+|...+..... ...+-.+. ...+ ...+- T Consensus 41 --~~~~~Glspi~~a~~~i~-~~~aa~~~~~~~f~Ng~~p~gil~~~~~~l~~e~~---~~~~~~~~~~~g~~n-~~~~~ 113 (219) T protein:vir:98 41 --MQQVYGSPDYVGGITSAL-LNSDATIFRRRYYSNGAHMGFILYSTDPDMTEEME---DEIAERIRDSKGVGN-FRSMF 113 (219) T ss_pred --CCCcceecHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCceEEEeCCCCCCHHHH---HHHHHHHHHhcCccc-cccee Confidence 122 49999888777765 456666776654 55443 21 233322211100 00000000 0000 00000 Q ss_pred CCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccC-CccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 333 GTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLG-NREVKATEIWSLQDATVRKIEKKKRLIQN 411 (518) Q Consensus 333 ~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d-~~~~TAtEi~s~~~~t~~t~~~~~~~~~~ 411 (518) .....+..+.-.++.++....+.++++.-+.....|....|++|..+|+. .+..|-+-+...+. ..++. T Consensus 114 l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp~~lG~~~~~~~~~sn~eq~~~----------~f~~~ 183 (219) T protein:vir:98 114 VNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPPGLSGIIPVNTAGLGDPLKIRE----------AYQAD 183 (219) T ss_pred EecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcccccCCCCCccCHHHHHH----------HHHHH Confidence 00001111234566677788899999999999999999999999999863 32222211111111 11222 Q ss_pred HHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHH Q lcl|Aclame:pro 412 VYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLN 455 (518) Q Consensus 412 ~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~ 455 (518) .|...+..+....... ...+..+.+.|++....|.. T Consensus 184 tL~P~~~~ie~~ln~~--------~~~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 184 EVLPLQEIIAESINSD--------YEIKSALKVNFKQPEKRDKN 219 (219) T ss_pred HHHHHHHHHHHHhhhh--------hcCCCccEEeecCcccccCC Confidence 3333333322221110 01122467899999999877 No 251 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=65.78 E-value=0.28 Score=23.63 Aligned_cols=273 Identities=10% Similarity=0.038 Sum_probs=107.9 Q ss_pred HHHHHcCCcceEEeccccccchHHHHHHHHHHH-hhcChHHHHHHHHHHHHhhCCEEEEEEEE-CCeE-EEEEEcCCeeE Q lcl|Aclame:pro 76 AAEYISGKPLSIDVTGVNGSKDENLTKQLKEAL-RIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQFW 152 (518) Q Consensus 76 ~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl-~dn~f~~~~~~~~e~~~a~G~~~~k~~~d-~~~i-~i~~v~ad~~~ 152 (518) +|++ | |.+-..+...+..+...|..-- .......-+...+...+..|.+++.+..+ +|++ .+..++|+.+- T Consensus 1 ia~l----~--~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~ 74 (278) T protein:vir:78 1 MASL----P--LKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVE 74 (278) T ss_pred Cccc----e--eEEEecCcccccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeE Confidence 2221 1 1111111111111211111100 00112222334455677778887776654 3443 45555566554 Q ss_pred EEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccc Q lcl|Aclame:pro 153 IDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTN 232 (518) Q Consensus 153 P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~ 232 (518) +.-.+ +...+|+..+ ...+..+. + T Consensus 75 v~~~~---------------~~~~~~y~~~-------------------------~~~g~~~~---------~------- 98 (278) T protein:vir:78 75 MLIEN---------------QSRELYYSIH-------------------------AATGNKLI---------V------- 98 (278) T ss_pred EEEcC---------------CCceEEEEEE-------------------------cCCceEEE---------E------- Confidence 43211 1111121110 00000000 0 Q ss_pred cCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCC Q lcl|Aclame:pro 233 DIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNK 312 (518) Q Consensus 233 ~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~ 312 (518) ... -+.|++.... .+..+|+|.+..+...++....+-..-..-+..+..-|+....-+..... T Consensus 99 --~~~----------evih~~~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e~~- 161 (278) T protein:vir:78 99 --HNM----------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKR- 161 (278) T ss_pred --ccc----------cEEEECCCCC----CCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCCCCHHHH- Confidence 000 1244443211 13356999999888888766554333223333333333332222111000 Q ss_pred CccccccCCCcchhheeeecCCcCCCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc--chHHH Q lcl|Aclame:pro 313 STDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE--VKATE 390 (518) Q Consensus 313 ~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~--~TAtE 390 (518) ....-.| .+.+.. .+.. .--+++..++.++....+.++.+..+...+.|....|++|..+|..++. .++.+ T Consensus 162 --~~~~~~~---~~~~~~-~g~~-~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~~~ 234 (278) T protein:vir:78 162 --QQVLEDF---KQYYEE-NGGI-LFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEE 234 (278) T ss_pred --HHHHHHH---HHHhcc-CCCc-eecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHH Confidence 0000000 000100 0000 0011223477788888899999999999999999999999999864322 23333 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCC Q lcl|Aclame:pro 391 IWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMS 451 (518) Q Consensus 391 i~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~ 451 (518) . .. ..++.+|..++..+.......... .......+. |.|+=... T Consensus 235 ~---~~----------~~~~~~l~P~~~~i~~~ln~~L~~--~~e~~~g~~--~~f~~~~l 278 (278) T protein:vir:78 235 L---NR----------FYLQHTLLPIVKQYEEEFNRKLLT--KTDREKIGI--LNLTLNLI 278 (278) T ss_pred H---HH----------HHHHHHHHHHHHHHHHHHHhhcCC--hhHhcCCce--EEEecccC Confidence 1 11 122223333333332222211110 000001123 44442222 No 252 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=64.55 E-value=0.3 Score=23.46 Aligned_cols=404 Identities=10% Similarity=0.002 Sum_probs=154.5 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhc-cchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLV-PDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) .||...+..+. .+|... .....-++.. .++... +..++-.+ ..+--| +...+-..... T Consensus 26 ~~~~~~~~~~~---~~gltp----~~l~~iLr~a~~gd~~~------~~~L~e~m-----~e~D~~--i~s~l~~Rk~a- 84 (526) T protein:vir:99 26 AGLAKEFAQHP---AKGLTP----AKLARILVEAEQGNLQA------QAELFMDM-----EERDAH--LFAEMSKRKRA- 84 (526) T ss_pred hhhhhhhcccC---cCCCCH----HHHHHHHHhhhCCCHHH------HHHHHHHH-----HhhChH--HHHHHHHHHHH- Confidence 11111111000 022111 1111101100 011000 00111000 001112 23444333333 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhc-ChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcC Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRID-NFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNN 158 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn-~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g 158 (518) |.+-+..|.-...+...++...+.+++.+.+. +|...+.. +..|...|=.++-..|... ...+.|. T Consensus 85 v~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~-~lda~~~G~s~~Eivw~~~--------~g~~~~~---- 151 (526) T protein:vir:99 85 ILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLD-ALDGIGHGYSCIELEWALQ--------GREWMPL---- 151 (526) T ss_pred HhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHH-HHHhhhhcceeEEEEEeec--------CCceeEE---- Confidence 34544555544344455667778888888764 47766655 4468888888887766521 1112221 Q ss_pred cEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccc Q lcl|Aclame:pro 159 EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNH 238 (518) Q Consensus 159 ~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 238 (518) .+++ +.-++..+... +...+ +++.+.... +. T Consensus 152 ---~l~~-------------r~~~~f~~~~~-------~~~~l---~~~~~~~~g---------~~-------------- 182 (526) T protein:vir:99 152 ---AFHH-------------RPQSWFQLNPE-------DQNEL---RLRDNSPAG---------EA-------------- 182 (526) T ss_pred ---Eeee-------------ecccceeeccC-------CCcEE---EecCCCCCc---------ee-------------- Confidence 0110 00011111000 00000 011111100 00 Q ss_pred eeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeeechhhhccCCCCCcccc Q lcl|Aclame:pro 239 SVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKTKIAASERMFRKKVNKSTDKE 317 (518) Q Consensus 239 ~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~ri~v~~~~l~~~~~~~~~~~ 317 (518) ++ . .-|+++... ...++|+|.|.+..|.-..--=+..+..|+.=++ .|.+-++.. .. .+.+... T Consensus 183 -l~-~--~k~i~~~~~-----~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igk-----y~-~~a~~~e 247 (526) T protein:vir:99 183 -LQ-P--FGWIIHRPR-----ARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGK-----YP-PGTADEE 247 (526) T ss_pred -ec-C--CCeEEEeec-----CCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEEe-----cC-CCCCHHH Confidence 00 0 112333222 2347888999998887554443444444444333 355433331 11 1111100 Q ss_pred ccCCCcchhheeeecCCcCCCCCCCccceEeccc-ccHHHHHHHHHHHHHHHHHHhCCCccccccC-Cccch----HHHH Q lcl|Aclame:pro 318 EWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD-FRDGSYRETMEYFAQKAVSKSGYNPATFNLG-NREVK----ATEI 391 (518) Q Consensus 318 ~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d-~~~~T----AtEi 391 (518) + ..-.+....+......--..+..|+.++.. ...+.|.+.++.+=+.|+..+ ++ +|++.+ +.+++ ..++ T Consensus 248 k---~~L~~av~~i~~d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LG-qtlTs~~~~g~~gS~a~g~v 322 (526) T protein:vir:99 248 K---ATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LG-GTLTSTTSQSGGGAFALGQV 322 (526) T ss_pred H---HHHHHHHHHHhhCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH-hh-hhhccccccCcchhhhHHHH Confidence 0 000011111111111111122335555532 233445555555544555444 33 355432 11122 2233 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCC- Q lcl|Aclame:pro 392 WSLQDATVRKIEKKKRLIQNVYE-QMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALA- 469 (518) Q Consensus 392 ~s~~~~t~~t~~~~~~~~~~~l~-~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~- 469 (518) ..+- ...-++.-++.+...|. +++..++.+ | +........-+.+.|+..-.+|..+.++.+++++..|+ T Consensus 323 h~~v--~~di~~aDa~~i~~tln~~Li~~l~~~-----N--~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~ 393 (526) T protein:vir:99 323 HNEV--RHDLLASDARQLAATLSRDLLWPLLVL-----N--RPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLE 393 (526) T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-----C--CCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCc Confidence 2222 22233445555666663 576666543 1 11212222346788998889999999999999999998 Q ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 470 MSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 470 ~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ++..+ +++.+ +..+.+..+++-.-....+......+.....+....+ T Consensus 394 i~~~~-i~e~~-Gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (526) T protein:vir:99 394 IPSAW-VYDKL-GIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVG 440 (526) T ss_pred cCHHH-HHHHh-CCCCCCCcccccCCCCCCccccccccccccccccccc Confidence 66654 54544 3433221122211000000000000000000000000 No 253 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=64.42 E-value=0.3 Score=23.45 Aligned_cols=368 Identities=11% Similarity=0.009 Sum_probs=133.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+.+.+-..=+.+-.+ .+.+.+ . ..... ..+...--..+++.+|+-+ T Consensus 1 Mg~f~~~f~~~~~~~~~----~~~~~~----~-------~~~~~-----------------~a~~~~~v~~~i~~ia~~i 48 (385) T protein:vir:95 1 MGLFDSVFKRHSELSWM----YDLEFL----Q-------DKSKK-----------------AYLKQIALNTVVEMVARTI 48 (385) T ss_pred CchhhhhhccCcccccc----cchhhh----h-------ccchh-----------------hhhhhHHHHHHHHHHHHHH Confidence 99865542211111000 000000 0 00000 0011111123444444444 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHH-HHHHHhhCCEEEEEEEECCeEEEEEEcCCeeEEEEEcCc Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKI-VELAGGSGVSAVKINILNGRPSISVHSSSQFWIDFKNNE 159 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~-~e~~~a~G~~~~k~~~d~~~i~i~~v~ad~~~P~~~~g~ 159 (518) .+-|. .+-..+...+..+...|..--..+-=...+.+. +...+-.|.+++.+ ..+++. +.+..+.+... T Consensus 49 a~~p~--~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~-~~~~~~----~~~~~~~~~~~--- 118 (385) T protein:vir:95 49 SQSEF--RVMKNNTKEKGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVK-NDEGHF----FVADDFEKEDE--- 118 (385) T ss_pred cccce--eeeecCccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEE-ecCCCe----eeccccccccc--- Confidence 44333 332222112222222221100001111223333 33444445555433 222221 11111111000 Q ss_pred EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce Q lcl|Aclame:pro 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) Q Consensus 160 ~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (518) +... . ..|+.... ..|.+.. . +... T Consensus 119 ---~~~~------~--~~~~~~~~-------------~~~~~~~-~----------------------------~~~~-- 143 (385) T protein:vir:95 119 ---LGLY------S--HRFTNVLV-------------NDFEFKR-V----------------------------FTMD-- 143 (385) T ss_pred ---cccc------c--ccceeeee-------------cccceee-e----------------------------eccc-- Confidence 0000 0 00000000 0000000 0 0000 Q ss_pred eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccCCCCCcccc-c Q lcl|Aclame:pro 240 VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKE-E 318 (518) Q Consensus 240 ~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~~~~~~~~~-~ 318 (518) -+.|++....+ +..+|.|.+.-+..++... ++.. +..+..+-++ ....+...... . T Consensus 144 --------eiih~~~~~~~----~~~~G~s~~~~~~~~i~~~---~~~~---~~~~~~~g~l-----~~~~~~~~~~e~~ 200 (385) T protein:vir:95 144 --------DVIYLKYNNQK----LDAFSLGLFEDYGEIFGRM---IDLQ---MLNNQIRGIL-----KVDATKFYNKEKQ 200 (385) T ss_pred --------cEEEecCCCCC----cccccchHHHHHHHHHHHH---HHHH---HhcCCCceEE-----EeCCccCCCHHHH Confidence 12344433221 2235888887776655432 2222 1233333222 11100000000 0 Q ss_pred cCC-CcchhheeeecCCcC--CCCCCCccceEecc------cccHHHHHHHHHHHHHHHHHHhCCCccccccCCccchHH Q lcl|Aclame:pro 319 WSM-NVDEDYFMQFKGTLD--AGAKLNDMIQFMQG------DFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKAT 389 (518) Q Consensus 319 ~~~-d~d~~~~~~~~~~~~--~~~~~~~~i~~~~~------~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~~TAt 389 (518) ..+ ..-...|.+...... .-.+++..++.++. ...+.++.+..+...+.|....|++|..++-+ ..++. T Consensus 201 ~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~--~sn~e 278 (385) T protein:vir:95 201 KELQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVLGE--MADLE 278 (385) T ss_pred HHHHHHHHHHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhcCC--CcCHH Confidence 000 000011111100000 00111222343332 22367889999999999999999999988521 11221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 390 EIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALA 469 (518) Q Consensus 390 Ei~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~aG~ 469 (518) + .....++.+|..++..+......... .........+.++++..+..|.+++++.+.+++.+|+ T Consensus 279 ~-------------~~~~~~~~~l~P~~~~ie~~l~~~L~---~~~~~~~~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~ 342 (385) T protein:vir:95 279 K-------------TIESYLQFCINPLLRKIEAELNSKFF---YQDEYLNDDMHIKVVGIDKRDPLKLSEAIDKLVASGT 342 (385) T ss_pred H-------------HHHHHHHHHHHHHHHHHHHHHHhhcC---ChhhcccceEEEechhhhccCHHHHHHHHHHHHhCCC Confidence 1 11222333444444443332221111 1111122357788888889999999999999999999 Q ss_pred CCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 470 MSVEEKVKLIHPK-WEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 470 ~S~~~~v~~~~~~-~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) |+.-++.+.+... ..++..++-. +.. + ..+.+ +.+|| T Consensus 343 lt~NE~R~~~g~~p~~~~~gd~~~--~~~-n--~~~~~-------~~kgg 380 (385) T protein:vir:95 343 FTRNQVRIMTGEEPADDPELDKFI--ITK-N--LQSAD-------AFKGG 380 (385) T ss_pred cCHHHHHHHhCCCCCCCCCCceee--ecc-c--ceecc-------cccCC Confidence 9999987766211 2222222111 000 0 01111 13444 No 254 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=62.93 E-value=0.33 Score=23.25 Aligned_cols=302 Identities=12% Similarity=0.045 Sum_probs=103.1 Q ss_pred EEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCcccce Q lcl|Aclame:pro 160 PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHS 239 (518) Q Consensus 160 ~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (518) ..++++- ..+.......|.+.- .-+|..-.|..++ ....+... .. .+. +... T Consensus 1 v~Eivw~----~~~g~~~~~~l~~r~------------~~~~~~f~~~~~~-~l~~~~~~-------~~---~g~-~~~~ 52 (355) T protein:vir:78 1 MFEQVYR----IENGRARLGKLAWRP------------PRTISRFDVAPDG-GLVAIEQW-------GV---FGK-ATVR 52 (355) T ss_pred CeEEEEE----eeCCeEEEeeeeecC------------ccceeeeeeccCC-ceeEEEec-------CC---CCC-Ccce Confidence 1122211 001111111111110 0001110011110 00000000 00 000 0000 Q ss_pred eecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-h--ccceeeechhhhccCCCCCccc Q lcl|Aclame:pro 240 VSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-K--TKTKIAASERMFRKKVNKSTDK 316 (518) Q Consensus 240 ~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~--g~~ri~v~~~~l~~~~~~~~~~ 316 (518) ++ +.-|++|... ...++|+|.|.+..|.-..--=...+..|+.=++ . |-+-...|...-..+.+..... T Consensus 53 lp---~~kfi~~~~~-----~~~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~ 124 (355) T protein:vir:78 53 IP---VDRLVVFVNE-----REGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAE 124 (355) T ss_pred ec---cCCEEEEEeC-----CCCCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHH Confidence 10 1113333322 2346799999999888544333333333333222 1 3333333322111000000000 Q ss_pred cccCCCcchh-h---eeeecCCcCC--CCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCc----cc Q lcl|Aclame:pro 317 EEWSMNVDED-Y---FMQFKGTLDA--GAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNR----EV 386 (518) Q Consensus 317 ~~~~~d~d~~-~---~~~~~~~~~~--~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~----~~ 386 (518) ... ..+.+ . ...+.++.+. -......|+.+........+.+.++.+=+.|+..+ ++ +|++.++. .. T Consensus 125 -~~~-~~~~~~l~~~~~~i~~g~~a~~iip~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~i-LG-qtlTs~~~~~gGS~ 200 (355) T protein:vir:78 125 -QWL-NDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAV-LA-HFLTLGGDKSTGSY 200 (355) T ss_pred -HHH-HHHHHHHHHHHHHhhCCcceeEeecCCceEEEeecCCCcccHHHHHHHHHHHHHHHH-hh-hhhccccCCccchh Confidence 000 00000 0 0000000000 01112235555554454455555555545555554 33 35544321 12 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 387 KATEIWSLQDATVRKIEKKKRLIQNVYE-QMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMN 465 (518) Q Consensus 387 TAtEi~s~~~~t~~t~~~~~~~~~~~l~-~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~ 465 (518) ...++..+- ....++.-...+...|. +||..++.+ | ++ .. ..-+.+.|+. +..+..+.++..++++ T Consensus 201 Alg~vh~~v--~~~~~~aD~~~i~~~ln~~li~~l~~l-----N--~~--~~-~~~P~~~~~~-~~~~~~~~a~~~~~l~ 267 (355) T protein:vir:78 201 ALGDTFASF--FTGSLNAVMKHIADVTQQHVVEDLVDQ-----N--WG--PE-EPAPRLVPAQ-LGKEQPVTAEAIRALV 267 (355) T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-----c--CC--CC-CCCCEEEecC-cChhHHHHHHHHHHHH Confidence 223432222 23334445555666663 466655442 1 11 11 1235677865 5566677899999999 Q ss_pred hCCCCCH----HHHHHHHcCCCCH-HHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 466 SALAMSV----EEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 466 ~aG~~S~----~~~v~~~~~~~~e-eea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ..|++-. +.++++.++ ..+ ++.++++. -.++.... ..+...+.-...++ T Consensus 268 ~~G~~~~~~~~~~~~~e~~g-ip~p~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~ 321 (355) T protein:vir:78 268 ECGAFTADPELEKDLRARYG-LPAPAERDDGAD-AAAAKAAG--RRRAKRLPGQRQGA 321 (355) T ss_pred hCCCccccHHHHHHHHHHhC-CCCCCCCCcccC-Cccccccc--cccccccCCccccc Confidence 9998543 345666653 322 11111111 01111111 11111111011111 No 255 >protein:vir:101418 Length: 569 # NCBI annotation: Prt # Family: family:all:9458 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006480;genbank:gi:46401636;genbank:GeneID:2777482 Probab=55.71 E-value=0.47 Score=22.37 Aligned_cols=444 Identities=11% Similarity=0.054 Sum_probs=153.8 Q ss_pred CCcCchHHH---HHHHHhcCCCChhh--HHhhHHHHhhccchhhhhhh---hhhhhhhhccCCCCccccceecCchHHHH Q lcl|Aclame:pro 1 MGVWSVMTR---FIKGWLNGKPNGSE--PELIPKYLPLVPDNQKEWSK---DSYLTSLWAQGYVPTVHDKLMNSGTGNEI 72 (518) Q Consensus 1 ~~~~~~~~~---~~~~w~~g~p~~~e--~~~~~~~~~~~~~~~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~~l~~~i 72 (518) -|+--.++- ...+.+.|+|-..- .+-+.--.+.+ .+..+-.+ ..|..+.....++.-..--.+|+ T Consensus 39 ~~~~~s~~g~p~~~~~~~~~~~~~~t~~~D~~~~g~~~~-~~~~~~pr~R~qiY~~~eeM~~~p~Ia~AlniHV------ 111 (569) T protein:vir:10 39 SGYLFSRAGAPVQLSGFLGGKPGDSGMAGDGLVDGSRFI-FDEVQLPEDRLQRYPLLEEMAVYSTIATALNIHI------ 111 (569) T ss_pred cceEEeecCcchhhhhhhccCccccchhhhhHHHHHHHH-hhhccCchhHHHHHHHHHHHhcCchhhhhhhhhh------ Confidence 111100000 11223333332100 00000000000 11111111 11221111222222222122222 Q ss_pred HHHHHHHHcCC----cceEEe-ccccccchHH---HHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEEE Q lcl|Aclame:pro 73 VVVAAEYISGK----PLSIDV-TGVNGSKDEN---LTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSIS 144 (518) Q Consensus 73 ~~~~A~ll~~e----~~~i~v-~~~~~~~d~~---~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i~ 144 (518) .|.|=..| ...|+- ..-+.++.+. +.+.|+.-+.. -+++.+....-.+++.|..+.|||.+.++..++ T Consensus 112 ---taALggde~TGd~vfI~p~~~~~~a~~daakai~~el~~dl~~-~iNr~~~~lA~~~~aFGdsYaRiY~~~~~GV~d 187 (569) T protein:vir:10 112 ---THALSFDKKTGQTFSIVPVHNGNDSDYDAAQALCGELMNDIGR-TINKEVAGWAFIMSVFGVAYVRPYAKEGIGITS 187 (569) T ss_pred ---heeecccccccceEEEEeecCCCCCcchHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHhhhhhheeeeccCCceeEE Confidence 22222222 122211 1111122222 22223221111 245566677788999999999999999888777 Q ss_pred EEcCCeeEEEE----E-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccc Q lcl|Aclame:pro 145 VHSSSQFWIDF----K-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAE 219 (518) Q Consensus 145 ~v~ad~~~P~~----~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~ 219 (518) +.-.....|-+ . .|+.++.. ... ..+...-.++|--|. .+++. T Consensus 188 l~~s~yt~PsfIqpFE~g~~tvGF~-~~~--~~~~~~ti~~l~p~q---------------------------m~rmK-- 235 (569) T protein:vir:10 188 FECSYYTLPSFIKEFEVSGNLAGFS-GDY--LKDASGKMVFADPWA---------------------------IIPMK-- 235 (569) T ss_pred EEecccccccccchhhhcCceEEee-ccc--CCccccceeeechhh---------------------------hhhhc-- Confidence 77766666632 2 23322211 111 111111112221111 11100 Q ss_pred ccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcccee Q lcl|Aclame:pro 220 RLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKI 299 (518) Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri 299 (518) .|.|..+..-.-+.+|.+..+... +....+--..|.+|-|-++.+.+.++.+=.+.-.+.- .+-.= T Consensus 236 --------mPrm~~i~q~~~v~~g~~~~~L~~--d~~~~~Pi~psn~GgSFL~~ae~pf~~l~~Al~sL~~----qri~d 301 (569) T protein:vir:10 236 --------IPYWRPKSNLMPVHTGHKAYSLLD--NPEERTPIETQNYGTSLLEYAYEPYMNLRSAIRSLKA----TRFNA 301 (569) T ss_pred --------ccceeeccccchhhhhhhheeecc--cccccccccchhhhhHHHHHHHhHHHHHHHHHHhccc----hhhHH Confidence 011111110011123333222211 1111111113557999999998888877554443321 11000 Q ss_pred eechhhhccCCCCCc---------------------------cccccCCCcchhheeeecCCcCCCCCCCccceEecccc Q lcl|Aclame:pro 300 AASERMFRKKVNKST---------------------------DKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDF 352 (518) Q Consensus 300 ~v~~~~l~~~~~~~~---------------------------~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~i 352 (518) .|-+.+|.-..++.. ++. .++ ...|..+.. ++.+ +..+++-+-.+ T Consensus 302 Sv~~~~Itlnm~gM~p~qr~~y~r~lt~~LKr~~d~ie~a~~gg~-~~~---~~~~H~LPv-~gek---q~~~tvDt~~~ 373 (569) T protein:vir:10 302 SKIDRIIGLAMNSLDPVKAADYSRTITQTLKRAADLMERRARGAN-NMP---TVTNTLLPI-MGDG---KGQMTIDTQTI 373 (569) T ss_pred HHHhHHhhccccCCCHHHHhHHHHHHHHHHHHHHHHHHHHhccCc-ccc---ccceeeeee-ecCc---ccccccccccc Confidence 011111111111100 000 001 112222221 1111 11222222222 Q ss_pred cHHH-HHHHHHHHHHHHHHHhCCCccccccC----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 353 RDGS-YRETMEYFAQKAVSKSGYNPATFNLG----NREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGG 427 (518) Q Consensus 353 r~~~-~~~~i~~~l~~i~~~~G~s~~tf~~d----~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~ 427 (518) +-.. -++.+-..+|++.-..|+.+..+|+. |+-..+-..+.+-|.- .....++.++.+.+..++.+--. T Consensus 374 ~A~~~gIEdvM~~~R~LagaLGlD~SMlGwAD~LsGGLGeGG~frtSaQaa-----~RS~~iRqa~~e~in~iidiH~~- 447 (569) T protein:vir:10 374 QADINGIEDILTYMRQLAAALGLDYTLLGWADQMSGGLGEGGFLRTAIQAA-----MRASWIQQGVEEFIQRAIDIHLA- 447 (569) T ss_pred ccCcccHHHHHHHHHHHHhhhccchhHhhHHHHhcccccccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhh- Confidence 2211 23445566788889999999998862 3322332222222221 22233555666666666666432 Q ss_pred hccccCCC-cCCceeeEEEeCCCC--CCCH-----HHHHHHHHHHH-------hCCCCC-HHHHHHHHc---CCCCHHHH Q lcl|Aclame:pro 428 TNNKEKAI-MRDEIRVIIEFPDPM--SVNL-----NELSSTLNNMN-------SALAMS-VEEKVKLIH---PKWEDEEI 488 (518) Q Consensus 428 ~~~~~~~~-~~~~~~v~v~f~D~i--~~d~-----~~~~~~~~~~~-------~aG~~S-~~~~v~~~~---~~~~eeea 488 (518) ..++.+ .+.++.-.|+|.-.. ...+ +.++++...++ .+.++- -+.+.+.+. .++++..+ T Consensus 448 --fKYgevf~~~drP~~V~F~s~~tAl~~E~~~n~~~raN~a~i~~Q~la~l~e~n~Lg~de~~m~y~l~d~~~~De~~~ 525 (569) T protein:vir:10 448 --FKYGKVYPEGDRPYKIEFHSVNTALQQEHNDNRDSQANYATIVTQILDAVSNNSVLANSDAFKRYLFSDVLEIDEKIS 525 (569) T ss_pred --hhcCcccCCCCcceEEEeccchHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHhhcchhHH Confidence 223332 233445566676433 2222 12222222111 111111 233333332 13555555 Q ss_pred HHHHHHHHHh----cccc-----CCCCc------hhccCcCCCC Q lcl|Aclame:pro 489 QAEVKRIYLE----NAIG-----EVPDP------EAIGGMETKG 517 (518) Q Consensus 489 ~eev~rI~~E----~~~~-----~~~dp------~~~~~~~~~g 517 (518) ++.+++.++. +-.+ .||.. ..+.+-|... T Consensus 526 e~l~ae~~akp~DEe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (569) T protein:vir:10 526 EALVNELKAKSEDDDHLMDSIIKTPPQELAQILESVFKEGNDND 569 (569) T ss_pred HHHHhhcCCCcchhHHHHHHHhcCChHHHHHHHHHHhhccCCCC Confidence 5555554211 1100 00100 1111112111 No 256 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=53.94 E-value=0.52 Score=22.16 Aligned_cols=414 Identities=11% Similarity=-0.002 Sum_probs=138.0 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhcc----------------chhhhhhhhhh-hhhhhccCCCCccccce Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVP----------------DNQKEWSKDSY-LTSLWAQGYVPTVHDKL 63 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~----------------~~~~~~~~~~~-~~~~w~~~~~~~~~~~~ 63 (518) -|+|-.|.-.+ =+.+++.. .++..+-...+. .....+..... ....||..+..-.... T Consensus 76 ag~g~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~- 150 (651) T protein:vir:99 76 VGFGFDLVPAQ--GVDGDDAS--DAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDI- 150 (651) T ss_pred hccCceeeecc--cCCCCccc--hHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcC- Confidence 33332211111 01111111 011100000000 00000100000 0111222221111000 Q ss_pred ecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhh--c--ChHHHHHHHHHHHHhhCCEEEEEEEECC Q lcl|Aclame:pro 64 MNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRI--D--NFDSKSVKIVELAGGSGVSAVKINILNG 139 (518) Q Consensus 64 ~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n--~f~~~~~~~~e~~~a~G~~~~k~~~d~~ 139 (518) .+-|..++...+. .+.+...+ ......+..++.. | .....+...+ .....+..++..+.+.. T Consensus 151 --~g~pv~L~~lp~~-------~~Rv~~~~----~~~~~~~~~ll~~~pn~~~~~~~~~~~~-q~~~~~~~~~~~~g~~~ 216 (651) T protein:vir:99 151 --EGRPVGLAYVPAR-------TVRVRRPQ----NRFDQPRHPEEGRYVDGDVADIASRGYV-QIRNGNRRYFGEAGDRY 216 (651) T ss_pred --ccchhhhhhcChh-------heeeeccc----ccccchhhhhhhcccccccchhHHHHHH-HHHhcCcceEEEeeccc Confidence 0001111111111 11111111 1111111111111 0 0111111221 22334555666554421 Q ss_pred -eEE-EEEEcCCeeEEEEEcC-cE-EEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccc Q lcl|Aclame:pro 140 -RPS-ISVHSSSQFWIDFKNN-EP-FRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTP 215 (518) Q Consensus 140 -~i~-i~~v~ad~~~P~~~~g-~~-~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~ 215 (518) ++. +.....+.+.+.+... .. ....+. + .++........... T Consensus 217 ~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~------~--------------------------~~~g~~~~~~~~~~-- 262 (651) T protein:vir:99 217 RGQEVVIDESGDEPTIRYREDEESEREPIFV------D--------------------------RETGDVTTGDANGL-- 262 (651) T ss_pred cceeeeeccCCcceeEEeccCcceeeeeecc------c--------------------------ceeeeEEEcCCCce-- Confidence 221 2222333333322111 10 000000 0 00000000000000 Q ss_pred ccccccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 216 ISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKT 295 (518) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g 295 (518) . .+.. --+.|++... ..+.++|+|.+..+...+.....+-.-..+=|+.| T Consensus 263 -------~---------~~~~----------~eViHir~~~----~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG 312 (651) T protein:vir:99 263 -------E---------NRPA----------NELIFIPNPS----ILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDND 312 (651) T ss_pred -------e---------Eecc----------cceEEecCCC----CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 0 0000 0134455431 12345799999999888855444333333445665 Q ss_pred c-ceee--echhhhccCCCCCccccccCCC-----cchhheeeecCCcC-CCCCCCccceEecccc-cHHHHHHHHHHHH Q lcl|Aclame:pro 296 K-TKIA--ASERMFRKKVNKSTDKEEWSMN-----VDEDYFMQFKGTLD-AGAKLNDMIQFMQGDF-RDGSYRETMEYFA 365 (518) Q Consensus 296 ~-~ri~--v~~~~l~~~~~~~~~~~~~~~d-----~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~i-r~~~~~~~i~~~l 365 (518) . +.-+ +|...+..... ...+-.|. .....+....+... ...+.+-.++.++... .+.++.+..+... T Consensus 313 ~~p~gil~~~~~~ls~e~~---~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~ 389 (651) T protein:vir:99 313 TIPRMVIKVTGGELSEESK---RDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNE 389 (651) T ss_pred CCCceEEEecCCCCCHHHH---HHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHH Confidence 4 3333 23222211100 00000000 00000000000000 0001122344444433 4678888888888 Q ss_pred HHHHHHhCCCccccccCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEE Q lcl|Aclame:pro 366 QKAVSKSGYNPATFNLGNRE-VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVII 444 (518) Q Consensus 366 ~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v 444 (518) +.|....|++|..+|+.+.. .+..|-... ..++.+|..++..+.......... .......+.+.+ T Consensus 390 ~eIa~afgVPp~~lG~~~~~~~sn~E~~~~------------~f~~~tL~P~~~~ie~eln~kLl~--~~e~~~~~~i~~ 455 (651) T protein:vir:99 390 HEIAKVLEVPPVKIGVTDSANRSNSDQQDK------------DFALEVIQPEQHTFAEWLYQIIHQ--QALGVTDWTIEY 455 (651) T ss_pred HHHHHHhCCCHHHhccCCCCCcccHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcC--ccccccCceEEE Confidence 99999999999999874332 222221111 112222333333322222111111 111112234555 Q ss_pred EeC--CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccC--------c Q lcl|Aclame:pro 445 EFP--DPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGG--------M 513 (518) Q Consensus 445 ~f~--D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~--------~ 513 (518) +|+ +-...|..++++.+..++++|+|+..++.+++. |-..+++...-+..++... ..++...|+ - T Consensus 456 ef~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~----~g~~~~gge~~~~~~~~~ 531 (651) T protein:vir:99 456 ELRGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEV----AGDVAGGGETEAVHEPPE 531 (651) T ss_pred EeccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcccccccccccccc----ccccccCCCCcccccCcc Confidence 555 456678999999999999999999999887773 2233333322222111100 000000000 0 Q ss_pred CCCCC Q lcl|Aclame:pro 514 ETKGG 518 (518) Q Consensus 514 ~~~gG 518 (518) +.+.| T Consensus 532 ~~~~~ 536 (651) T protein:vir:99 532 ENKIG 536 (651) T ss_pred ccccc Confidence 11111 No 257 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=48.16 E-value=0.68 Score=21.51 Aligned_cols=374 Identities=10% Similarity=0.013 Sum_probs=121.3 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) ||+- ++++......- ... .+. .....+ ... ..+...--..+++.+|+-+ T Consensus 1 Mgl~----d~~~~~~~~~~-----~~~-~~~----~~~~~~--------------~~~---~~l~~~~v~~~i~~Ia~~i 49 (395) T protein:vir:96 1 MGIL----DFFSFKKSGTL-----SDD-DSG----STTSEK--------------LTN---VVLKEDALYKCVNYLARII 49 (395) T ss_pred Ccch----hhhcCCCCccc-----ccc-ccc----cchhhh--------------cch---hhhhhHHHHHHHHHHHHhh Confidence 7765 44432211100 000 000 000000 000 0111111122334455544 Q ss_pred cCCcceEEeccccccchHHHHHHHHHHHhh--cCh--HHHHHHHHHHHHh-hCCEEEEEEEECCeEEEEEEcCCeeEEEE Q lcl|Aclame:pro 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRI--DNF--DSKSVKIVELAGG-SGVSAVKINILNGRPSISVHSSSQFWIDF 155 (518) Q Consensus 81 ~~e~~~i~v~~~~~~~d~~~~~~l~~vl~d--n~f--~~~~~~~~e~~~a-~G~~~~k~~~d~~~i~i~~v~ad~~~P~~ 155 (518) ..=|..+.-.+.....+. .+..+|.. |.+ ...+.+.+...+. .|.+++.+..+. .+ +.++.+.... T Consensus 50 a~lp~~v~~~~~~~~~~~----~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~-~~----~~~~~~~~~~ 120 (395) T protein:vir:96 50 SKSTFRIKAPEKLTENQK----DWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGK-GI----YVADAFTQDK 120 (395) T ss_pred ccceeEEEeCCccccccc----hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCC-ce----ecCCcccccc Confidence 443433322211111222 23333321 211 1223344444444 455554443322 11 1111111000 Q ss_pred EcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccccccccccccCc Q lcl|Aclame:pro 156 KNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQ 235 (518) Q Consensus 156 ~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 235 (518) . +. . ..|.... ...|.+... | . T Consensus 121 ---~---------~~-~---~~~~~v~-------------~~~~~~~~~-~----------------------------~ 142 (395) T protein:vir:96 121 ---K---------LS-G---NKFKVSR-------------VQGQTYEKI-F----------------------------T 142 (395) T ss_pred ---c---------cc-c---ceeeeee-------------eccceeeeE-e----------------------------c Confidence 0 00 0 0010000 001111100 0 0 Q ss_pred ccceeecCCCcceEEEecCcccCccccCCCCCcc---hhhhhHHHHHHHHHHHH--HHHH-HHHhccceeeechhhhccC Q lcl|Aclame:pro 236 LNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGES---DLSQCTNYLFAVDYFFT--VYMR-EGEKTKTKIAASERMFRKK 309 (518) Q Consensus 236 ~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S---~~~~~~~~i~~lD~~~s--~~~~-e~~~g~~ri~v~~~~l~~~ 309 (518) +.. +.|++..... ..+.+.+ .+..++.+.-++...-. ++.. -+..|.....+ +... T Consensus 143 ~~d----------vih~k~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 204 (395) T protein:vir:96 143 FDQ----------VIYLKNDNSD----LMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQ----ENSD 204 (395) T ss_pred cCc----------eEEecccCCc----cccccccccchHHHHHHHHHHHHHHHHHHHHHhhhccccccccee----eccC Confidence 000 1222221100 1111222 22233333222211111 1111 12222211111 1111 Q ss_pred CCCCccccccCCCcchhheeeecCCcCC--CCCCCccceEecccccHH------HHHHHHHHHHHHHHHHhCCCcccccc Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDA--GAKLNDMIQFMQGDFRDG------SYRETMEYFAQKAVSKSGYNPATFNL 381 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~~--~~~~~~~i~~~~~~ir~~------~~~~~i~~~l~~i~~~~G~s~~tf~~ 381 (518) ......... ..-++.+......... ...++..++.++..-... ++.+..+...+.|....|++|..++. T Consensus 205 ~~~~~~~~~---~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~~ 281 (395) T protein:vir:96 205 GGRQPKSDK---DFFKRTIEKIRTESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHG 281 (395) T ss_pred chhhHHHHH---HHHHHHHHHhhcCCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcC Confidence 000000000 0000111111100000 001112233344433333 34444455667899999999998862 Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 382 GNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTL 461 (518) Q Consensus 382 d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~ 461 (518) +.. ++.+ .. ...++.+|...+..+-....... ... ......+.++|+.-+..|.+++++.+ T Consensus 282 ~~s--n~e~---~~----------~~f~~~~L~P~~~~ie~~l~~~L---l~~-~e~~~~~~f~~~~l~~~d~~~~~~~~ 342 (395) T protein:vir:96 282 DIA--DNQK---NY----------ELLLEGPIESLITNIVDGLEYAI---FDK-SETLEGSFIKVTGLKNYDLFSISSQA 342 (395) T ss_pred CCc--cHHH---HH----------HHHHHHHHHHHHHHHHHHHHhhc---CCh-hhhcCceeEeecchhccCHHHHHHHH Confidence 211 1111 11 12233334444333332221111 010 00112245788888899999999999 Q ss_pred HHHHhCCCCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 462 NNMNSALAMSVEEKVKLIH-PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 462 ~~~~~aG~~S~~~~v~~~~-~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+++.+|+|+.-++.+++. |..++.+.++-. ..-+ ..+-+...|+-+.+.| T Consensus 343 ~~~~~~G~~T~NE~R~~~gl~pi~~~~gD~~~---~~~N---~~~~~~~gge~~~~~~ 394 (395) T protein:vir:96 343 DKLISSGFVFIDEVREEIGLPELPDGLGKVLY---MTKN---YESVLERGGEVDEEVE 394 (395) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCCCCceee---eccc---ceechhccCCCCCCCC Confidence 9999999999999877662 223332222111 0000 1111112233334444 No 258 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=44.99 E-value=0.79 Score=21.16 Aligned_cols=410 Identities=10% Similarity=0.018 Sum_probs=152.1 Q ss_pred CCc-----CchH-------------HHHHHHHhcCCCC-hhhHHhhHHHHhhc-cchhhhhhhhhhhhhhhccCCCCccc Q lcl|Aclame:pro 1 MGV-----WSVM-------------TRFIKGWLNGKPN-GSEPELIPKYLPLV-PDNQKEWSKDSYLTSLWAQGYVPTVH 60 (518) Q Consensus 1 ~~~-----~~~~-------------~~~~~~w~~g~p~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~ 60 (518) |.. |.++ ...=+.| ++-|- +.-+.+...-++.. .++... +..++-.+ . T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~gltp~~l~~il~~a~~gd~~~------~~~L~edm-----~ 68 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEF-AQHPAKGLTPAKLARILVEAEQGNLQA------QAELFMDM-----E 68 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhc-ccCCCCCcCHHHHHHHHHHhhCCCHHH------HHHHHHHH-----H Confidence 110 1111 0000111 11110 00001111101100 011000 00111000 0 Q ss_pred cceecCchHHHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhc-ChHHHHHHHHHHHHhhCCEEEEEEEECC Q lcl|Aclame:pro 61 DKLMNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRID-NFDSKSVKIVELAGGSGVSAVKINILNG 139 (518) Q Consensus 61 ~~~~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn-~f~~~~~~~~e~~~a~G~~~~k~~~d~~ 139 (518) .+--| +...+...... |.+-+..|.-...+...++...+.+++.+.+. +|...+.+ +..|...|-.++-..|... T Consensus 69 e~D~~--i~s~l~~Rk~a-v~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~-~ldA~~~G~s~~Ei~w~~~ 144 (526) T protein:vir:79 69 ERDAH--LFAEMSKRKRA-ILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLD-ALDGIGHGYSCIELEWALQ 144 (526) T ss_pred hhChH--HHHHHHHHHHH-HhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHH-HHhhhhhcceeEEEEEeec Confidence 01112 23333333333 44555556544444455666777888888764 46665554 5558888888887766421 Q ss_pred eEEEEEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccc Q lcl|Aclame:pro 140 RPSISVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAE 219 (518) Q Consensus 140 ~i~i~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~ 219 (518) ...+.|. .+++ +.-++..+... +...+ +++.+.... T Consensus 145 --------~g~~~~~-------~l~~-------------r~~~~F~~~~~-------~~~~l---~~~~~~~~g------ 180 (526) T protein:vir:79 145 --------GREWMPL-------AFHH-------------RPQSWFQLNPE-------DQNEL---RLRDNSPAG------ 180 (526) T ss_pred --------CCceeEE-------Eeee-------------ecccceEeccC-------CCcEE---EecCCCCCc------ Confidence 1112221 0000 00001000000 00000 011111100 Q ss_pred ccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccce Q lcl|Aclame:pro 220 RLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKTK 298 (518) Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~r 298 (518) +. ++ +.-++++... ...++|+|.+.+..|.-..--=+..+..|+.=.+ .|.+- T Consensus 181 ---~~---------------l~---~~k~iv~~~~-----~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~ 234 (526) T protein:vir:79 181 ---EA---------------LQ---PFGWIIHRPR-----ARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) T ss_pred ---ee---------------ec---CCceEEEeec-----CCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCce Confidence 00 00 0112333222 2347788999988887544333334444443333 35443 Q ss_pred eeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccc-ccHHHHHHHHHHHHHHHHHHhCCCcc Q lcl|Aclame:pro 299 IAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD-FRDGSYRETMEYFAQKAVSKSGYNPA 377 (518) Q Consensus 299 i~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-ir~~~~~~~i~~~l~~i~~~~G~s~~ 377 (518) .+.- .. .+.+...+ ..-.+....+......--..+..|+.++.. ...+.|.+.++.+=+.|+..+ ++ + T Consensus 235 ~igk-----y~-~~a~~~ek---~~L~~av~~i~~da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LG-q 303 (526) T protein:vir:79 235 RLGK-----YP-PGTADEEK---ATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LG-G 303 (526) T ss_pred EEEe-----cC-CCCCHHHH---HHHHHHHHHHhcCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH-hh-h Confidence 3321 10 11110000 000011111111111111122335555532 233445555555544555444 43 3 Q ss_pred ccccC-Cccch----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCC Q lcl|Aclame:pro 378 TFNLG-NREVK----ATEIWSLQDATVRKIEKKKRLIQNVYE-QMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMS 451 (518) Q Consensus 378 tf~~d-~~~~T----AtEi~s~~~~t~~t~~~~~~~~~~~l~-~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~ 451 (518) |++.+ +.+++ ..++..+- .-.-++.-++.+...|. +++..++.+ | +........-+.+.|+..-. T Consensus 304 tlTs~~~~g~~gS~a~g~vh~~v--~~di~~aDa~~i~~tln~~Li~~l~~~-----N--~~~~~~~~~~p~~~~~~~e~ 374 (526) T protein:vir:79 304 TLTSTTSQSGGGAFALGQVHNEV--RHDILASDARQLAATLSRDLLWPLLVL-----N--RPGSPDVRRAPRLVFDLREQ 374 (526) T ss_pred hhccccccCcchhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-----C--CCCcCCccccceEEeCCCCc Confidence 55442 11122 22332222 22233445556666663 566665543 1 12111222346788998889 Q ss_pred CCHHHHHHHHHHHHhCCC-CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 452 VNLNELSSTLNNMNSALA-MSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 452 ~d~~~~~~~~~~~~~aG~-~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) +|..+.++.+.+++..|+ ++.. ++++.++ ..+.+..+.+..-....+......+.....+....+ T Consensus 375 eDl~~~a~~~~~L~~~G~~i~~~-~i~e~~g-ip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (526) T protein:vir:79 375 ADITSMAQSIPALVNVGLEIPSA-WVYDKLG-IPQPAKNEPVLRPAAQPAILSRQHGQRVAALATIVG 440 (526) T ss_pred ccHHHHHHHHHHHHhCCCcCCHH-HHHHHhC-CCCCCCchhhccccCCcccccccccccccccccccc Confidence 999999999999999998 5554 5555543 432211122211000000000000000000100000 No 259 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=43.99 E-value=0.82 Score=21.05 Aligned_cols=351 Identities=10% Similarity=0.004 Sum_probs=118.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCc--hHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSG--TGNEIVVVAAE 78 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--l~~~i~~~~A~ 78 (518) ||+|+.++.|=..+...++.. + ..| ... .+.++ ..-.+++.+|+ T Consensus 1 Mg~f~~~~~f~~~~~~~~~~~-----~-----------~~~----------~~~--------~~~~~~~~v~~~i~~Ia~ 46 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLNNDTQR-----V-----------TAW----------QNE--------AVEYTSAFVTNIHNKIAN 46 (378) T ss_pred CccchhhhhhhccccCCCcce-----e-----------eec----------ccc--------hhHHHHHHHHHHHHHHHh Confidence 999999987654444333210 0 000 000 00001 11223344444 Q ss_pred HHcCCcceE-Eeccccccch---HHHHHHHHHHHhh--cCh--HHHHHHH-HHHHHhhCCEEEEEEEECCeEEEEEEcCC Q lcl|Aclame:pro 79 YISGKPLSI-DVTGVNGSKD---ENLTKQLKEALRI--DNF--DSKSVKI-VELAGGSGVSAVKINILNGRPSISVHSSS 149 (518) Q Consensus 79 ll~~e~~~i-~v~~~~~~~d---~~~~~~l~~vl~d--n~f--~~~~~~~-~e~~~a~G~~~~k~~~d~~~i~i~~v~ad 149 (518) -+.+=|..+ .-...+...+ +....-+..+|.. |.. ...|.+. +...+-.|.+++.+..++.... T Consensus 47 ~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~------- 119 (378) T protein:vir:93 47 EITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGE------- 119 (378) T ss_pred hhhhCceeeEEEcccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCce------- Confidence 443333322 1111111111 0111223344431 111 1123333 4445555766655444332111 Q ss_pred eeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccc Q lcl|Aclame:pro 150 QFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYL 229 (518) Q Consensus 150 ~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~ 229 (518) .+..+..+... .|. ...| T Consensus 120 -~~~l~~~~~~~---------------~~~------------------~~di---------------------------- 137 (378) T protein:vir:93 120 -LLDLLFADDKK---------------EYK------------------TEEL---------------------------- 137 (378) T ss_pred -EEEEEecCCee---------------Eec------------------ccee---------------------------- Confidence 11111111000 000 0000 Q ss_pred ccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhccceeeechhhhccC Q lcl|Aclame:pro 230 HTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKK 309 (518) Q Consensus 230 ~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~~ri~v~~~~l~~~ 309 (518) .|++++. + .--|.|..+.+.. +++. .+..|..+-+ +... T Consensus 138 --------------------ih~r~~~----~--~~~~~s~l~~~~~---~i~~-------~~~~~~~~g~-----l~~~ 176 (378) T protein:vir:93 138 --------------------VRLTSPF----Y--INEDTSILDNALA---SIQT-------KLEQGKLRGL-----LKIN 176 (378) T ss_pred --------------------EEecCcc----c--cchhhHHHHHHHH---HHHH-------HHhcCcccce-----eeeC Confidence 1111100 0 0002222221111 1111 1111211111 1000 Q ss_pred CCCCccccccCCCcchhheeeecCCcC----CCCCCCccceEecccccHHHHHHHHHHHHHHHHHHhCCCccccccCCcc Q lcl|Aclame:pro 310 VNKSTDKEEWSMNVDEDYFMQFKGTLD----AGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNRE 385 (518) Q Consensus 310 ~~~~~~~~~~~~d~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d~~~ 385 (518) ..-.........+.-.+.|....+... .--+++..++.++.+..+.+ +.......+.|....|++|..+.- T Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~g---- 251 (378) T protein:vir:93 177 AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG---- 251 (378) T ss_pred CcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhh-HHHHHHHHHHHHHHhCCCHHHhcC---- Confidence 000000000000000000000000000 00011122444444444444 355566777899999999987731 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cCCCcCCceeeEEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 386 VKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNK----EKAIMRDEIRVIIEFPDPMSVNLNELSSTL 461 (518) Q Consensus 386 ~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~----~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~ 461 (518) |++|-.. ...+..+|..++..+........... .+........+.++++.....|.+++++.+ T Consensus 252 -~~~e~~~------------~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~ 318 (378) T protein:vir:93 252 -TATQEQQ------------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLY 318 (378) T ss_pred -CcHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCHHHHHHHH Confidence 2333111 11223333333333322221110000 000011123467788888899999999999 Q ss_pred HHHHhCCCCCHHHHHHHHcCCCCH-HHHHH-----HHHHHH--HhccccCCCCchhccCcCCC Q lcl|Aclame:pro 462 NNMNSALAMSVEEKVKLIHPKWED-EEIQA-----EVKRIY--LENAIGEVPDPEAIGGMETK 516 (518) Q Consensus 462 ~~~~~aG~~S~~~~v~~~~~~~~e-eea~e-----ev~rI~--~E~~~~~~~dp~~~~~~~~~ 516 (518) .+++.+|+|+.-++.+++. +.. +..++ -...+. .++......+ ...++-|.+ T Consensus 319 ~~~~~~G~~t~NE~R~~~g--l~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~-~~~~e~~n~ 378 (378) T protein:vir:93 319 HENINGPIFTQNQLLVKMG--EQPIEGGDVYIANLNAVAVKNLSDLQGSRKDV-TSTDETNNQ 378 (378) T ss_pred HHHHhCCCcCHHHHHHHhC--CCCCCCCCeeeeccccccccchhhhcCccCCC-CCCCCCCCC Confidence 9999999999999877663 221 11110 000000 0100000000 000111222 No 260 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=40.09 E-value=0.99 Score=20.61 Aligned_cols=412 Identities=14% Similarity=0.130 Sum_probs=160.1 Q ss_pred CCcCchH----------HHHHHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHH Q lcl|Aclame:pro 1 MGVWSVM----------TRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGN 70 (518) Q Consensus 1 ~~~~~~~----------~~~~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~ 70 (518) -|..|+| -..+|-|+. +|| +++. -+.+-.-+ |+. .. T Consensus 47 ~gfv~~~~~ng~i~~v~~~~l~~~f~-npd----~~~~----~i~~l~~y---------~yi----------------~~ 92 (525) T protein:vir:10 47 DGFVMDLCNNGKIKTVNLDTLQLWFN-NPD----KYIN----NIVNLLTY---------YYI----------------ID 92 (525) T ss_pred HHHHHHhhcCCceeeeeHHHHHhhhc-ChH----HHHH----HHHHHHHH---------hhh----------------hc Confidence 3333333 245688886 465 1211 11111111 110 00 Q ss_pred HHHHHHHHHHcCCcc---eEEeccccccch---HHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCeEEE- Q lcl|Aclame:pro 71 EIVVVAAEYISGKPL---SIDVTGVNGSKD---ENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSI- 143 (518) Q Consensus 71 ~i~~~~A~ll~~e~~---~i~v~~~~~~~d---~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~i~i- 143 (518) .=+.++-+|+|+=|+ .|.+-..+...+ ..++..|.+-+++-+ ..++.+.+.+-.|+.+--...+...|-+ T Consensus 93 ~~v~ql~~li~~lp~l~y~i~~~~~~k~~~~~~s~~n~~l~k~i~hk~---ltrdll~q~a~~gtlig~wlg~~~~py~~ 169 (525) T protein:vir:10 93 GNVFQLYDLIFSLPPLDYQIKVLKRDKDYKEDLSTINLYLEKKIQHKQ---LTRDLLVQLAHSGTLIGTWLGSKREPYFN 169 (525) T ss_pred chHHHHHHHHHhcCCcceeehhhhhccchhhHHHHHHHHHHHhHHHHH---HHHHHHHHhhccCceeEeeecCCCCcchh Confidence 112345566666542 222222222222 234555665444322 2333444444445544322122111211 Q ss_pred EEEcCCeeEEEEE-cCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEec----cCCccccccc Q lcl|Aclame:pro 144 SVHSSSQFWIDFK-NNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKI----DGDKTTPISA 218 (518) Q Consensus 144 ~~v~ad~~~P~~~-~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~----~~~~~v~~~~ 218 (518) -|-.-..+||-++ +|+.++++=..-+.. |.-+|+.+ ..+...+| |+..-|+. ++.+.-.+.. T Consensus 170 vf~~~kyvfp~~r~~g~~v~vid~~~f~~------~~~~~r~~------~~~~lsp~-i~~~~y~~~~~~~~~~~~~~r~ 236 (525) T protein:vir:10 170 VFNNLKYVFPYGRAKGKMVAVIDLQWFDE------MSELERKL------TFENLSPL-ITENKYKKWKEYNGENEDALRY 236 (525) T ss_pred hhhhhhhhccccccCCceEEEEehHHhhh------hhHHHHHH------HHHhhchh-hhhhhhhHHhhcccccchhhee Confidence 1112345577654 677776652211000 00111111 11111222 22111110 0111000111 Q ss_pred cccccccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccc Q lcl|Aclame:pro 219 ERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKT 297 (518) Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~ 297 (518) .++ +.+.++ ..-+-.+ +-|...+.|||..-|.++.-.. .+ +.++ .-.. T Consensus 237 i~L-------------P~e~t~--------~lr~~tl-~rnqrlG~s~vtp~l~dI~hk~-kl--------rd~EqsIA~ 285 (525) T protein:vir:10 237 IML-------------PISKTL--------VARIHTL-SRNQRLGIPYGTQTLFDIQHKQ-KL--------RDLEQSIAD 285 (525) T ss_pred eec-------------ccceeE--------Eeeeccc-ccCcccCcchhhhHHHHHHHHH-HH--------HHHHHHHHH Confidence 111 111111 1111111 1222335566665554433221 11 1111 1122 Q ss_pred eeeechhhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEec-c--------ccc------HHHHHHHHH Q lcl|Aclame:pro 298 KIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQ-G--------DFR------DGSYRETME 362 (518) Q Consensus 298 ri~v~~~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~-~--------~ir------~~~~~~~i~ 362 (518) +|+-|-.+|+..++.+ ..+...--.++++..++.....-+.+.++++.+++ | ++. +-+ -++ T Consensus 286 kii~a~avLk~gg~~g-n~mk~p~~~kqkil~gVk~aleK~~kdK~Gi~vi~~Pdfa~~efp~ik~~~~glDg~---K~d 361 (525) T protein:vir:10 286 KIIKAMAVLKFRGKDD-NDSKVKESAKRKVLAGVKRALEKGVKDKNGIACIAMPDFATFEFPEIKNGDKTLDPK---KYD 361 (525) T ss_pred HhhhhheeeeeccccC-ccccCchHHHHHHHHHHHHHHhcccccccCeEEEeccceeecccccccCcccCCCch---hhh Confidence 3333333443332211 11111111223333333322233334444444432 1 111 112 233 Q ss_pred HHHHHHHHHhCCCccccccCCcc-chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCce Q lcl|Aclame:pro 363 YFAQKAVSKSGYNPATFNLGNRE-VKATEIWSLQDAT-VRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEI 440 (518) Q Consensus 363 ~~l~~i~~~~G~s~~tf~~d~~~-~TAtEi~s~~~~t-~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~ 440 (518) ++=+-|-...|+|..-..-++++ .|| +-+.++ |+++.-....++.+..+|+..++-- .... T Consensus 362 ~I~~DI~~A~GlS~sL~nGdggNyAta----slnld~fykkigVm~e~Iee~y~kL~d~Vl~~-------------~k~~ 424 (525) T protein:vir:10 362 SIDNDITNATGISQVLTNGTKGNYASA----KLNLDVFYKKIGVMLEIIEEIYNQLIDIILGE-------------EKGC 424 (525) T ss_pred hhhhhhhhhhccceeeecCCCCceeee----eeeHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-------------ccCc Confidence 34445778889987766555554 344 223333 3333333333344444444333211 1112 Q ss_pred eeEEEeCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 441 RVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIHPKWED--EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 441 ~v~v~f~D~i~~d~~~~~~~~~~~~~aG~~S~~~~v~~~~~~~~e--eea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) ..-++.+..-+.+.+++.+.+.++..-|..++ ..+.-+--+|++ |++--|.+|.+-......++.. .-|.++.| T Consensus 425 nyifnydkd~pi~~kkk~d~LIkL~d~g~s~k-~vldl~gis~e~y~E~s~yEtE~lkl~EKi~pp~~~---~v~SGk~~ 500 (525) T protein:vir:10 425 NYIFQYNKDTPIEREKKLDTLIKLEAQGYSAK-YVLDILGISSEEYFEESIYEIEKLKLREKIMPPLNT---NVLSGKDG 500 (525) T ss_pred ceEEecCCCchhhhhhhhhhhhhhhccchhhh-hhhhhhccCcchHHHHHHHHHHHHHHhhhccccccc---eeeecccc Confidence 33456788889999999999999988787553 345432223443 5666677777644344333322 22334444 No 261 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=39.99 E-value=0.99 Score=20.60 Aligned_cols=396 Identities=9% Similarity=-0.034 Sum_probs=150.4 Q ss_pred CCcCchHHHHHHHHhcCCCChhhHHhhHHHHhhc-cchhhhhhhhhhhhhhhccCCCCccccceecCchHHHHHHHHHHH Q lcl|Aclame:pro 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLV-PDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) Q Consensus 1 ~~~~~~~~~~~~~w~~g~p~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) -||+..+..+. -+|... .+...-++.. .++...+. .++..+ -.+--| +...+-... .- T Consensus 26 ~~~~~~~~~~~---~~gltp----~~l~~iL~~a~~gd~~~~~------~L~~dm-----~~~D~h--i~s~l~~Rk-~a 84 (512) T protein:vir:19 26 AMVMKRTQEHP---SSGVTP----NRAAQMLRDAERGDLTAQA------DLAFDM-----EEKDTH--LFSELSKRR-LA 84 (512) T ss_pred cccchhhcccc---ccCCCH----HHHHHHHHHhhCCCHHHHH------HHHHHH-----HhhChH--HHHHHHHHH-HH Confidence 22221111000 122111 1111101000 01111100 000000 001112 244443333 33 Q ss_pred HcCCcceEEeccccccchHHHHHHHHHHHhhc-ChHHHHHHHHHHHHhhCCEEEEEEEE--CCeE---EEEEEcCCeeEE Q lcl|Aclame:pro 80 ISGKPLSIDVTGVNGSKDENLTKQLKEALRID-NFDSKSVKIVELAGGSGVSAVKINIL--NGRP---SISVHSSSQFWI 153 (518) Q Consensus 80 l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn-~f~~~~~~~~e~~~a~G~~~~k~~~d--~~~i---~i~~v~ad~~~P 153 (518) |.+-+..|.-...+..++..+.+.+++.|.+- +|...+.. +.+|...|=.++-..|. ++.. ++.++++..|.. T Consensus 85 v~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~-lldA~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~~f~~ 163 (512) T protein:vir:19 85 IQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFD-AGDAILKGYSMQEIEWGWLGKMRVPVALHHRDPALFCA 163 (512) T ss_pred HhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHH-HHhhhhhcceeeeeEeeeeCCceeeeeeeeecccccee Confidence 44555555543333445566777888888764 46665554 55688888888877664 2221 122222221111 Q ss_pred EEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccccccccccccc Q lcl|Aclame:pro 154 DFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) Q Consensus 154 ~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~~~~~~~~~~ 233 (518) . . .+..++ .++...... .. T Consensus 164 ~------------------------------~----------~~~~~l---r~~~~~~~G---------~~--------- 182 (512) T protein:vir:19 164 N------------------------------P----------DNLNEL---RLRDASYHG---------LE--------- 182 (512) T ss_pred c------------------------------c----------CCCcEE---EecCCCCCc---------ee--------- Confidence 0 0 000001 011111000 00 Q ss_pred CcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeeechhhhccCCCC Q lcl|Aclame:pro 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKTKIAASERMFRKKVNK 312 (518) Q Consensus 234 ~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~ri~v~~~~l~~~~~~ 312 (518) ++ .. -++++... ...++|+|.+.+..|.-..--=+..+..|+.=.+ .|.+-++.- .+ .+ T Consensus 183 ------l~-~~--k~i~~~~~-----~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igk-----y~-~~ 242 (512) T protein:vir:19 183 ------LQ-PF--GWFMHRAK-----SRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMRVGK-----YP-TG 242 (512) T ss_pred ------ec-CC--ceEEEecc-----CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEe-----cC-CC Confidence 00 11 12333222 2346788999988887555444444454544443 354433321 11 00 Q ss_pred CccccccCCCcchhheeeecCCcCCCCCCCccceEeccc-ccHHHHHHHHHHHHHHHHHHhCCCccccccC-Ccc--chH Q lcl|Aclame:pro 313 STDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD-FRDGSYRETMEYFAQKAVSKSGYNPATFNLG-NRE--VKA 388 (518) Q Consensus 313 ~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-ir~~~~~~~i~~~l~~i~~~~G~s~~tf~~d-~~~--~TA 388 (518) .+...+ +.-.+....+.......-..+..|+..... ...+.|.+.++.+=+.|+..+ + -+|++.+ ++. ... T Consensus 243 a~~~ek---~~L~~al~~~~~~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~i-L-GqtlTs~~g~~Gs~a~ 317 (512) T protein:vir:19 243 STNREK---ATLMQAVMDIGRRAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAI-L-GGTLTTEAGDKGARSL 317 (512) T ss_pred CCHHHH---HHHHHHHHHHhhCcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHH-h-hhhhcccccccchhhH Confidence 000000 000011111111111111122234444432 223335544554444555443 2 3455433 211 223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHHHHHHHHhC Q lcl|Aclame:pro 389 TEIWSLQDATVRKIEKKKRLIQNVYE-QMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSA 467 (518) Q Consensus 389 tEi~s~~~~t~~t~~~~~~~~~~~l~-~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~~~a 467 (518) .++..+- .-.-++.-++.+...|. +++..++.+ | ++.......-+.+.|+..=++|.+..++.+.++. . T Consensus 318 ~~vh~ev--~~di~~aDa~~i~~tln~~li~~l~~~-----N--~~~~~~~~~~p~~~f~~~e~eDl~~~a~~~~~l~-~ 387 (512) T protein:vir:19 318 GEVHDEV--RREIRNADVGQLARSINRDLIYPLLAL-----N--SDSTIDINRLPGIVFDTSEAGDITALSDAIPKLA-A 387 (512) T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-----C--CCCCCCccccceEEecCCChhhHHHHHHHHHHHh-c Confidence 3333222 23334455566667773 577665543 1 1111122234778898888889888999888876 6 Q ss_pred CCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCC--CC Q lcl|Aclame:pro 468 LAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETK--GG 518 (518) Q Consensus 468 G~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~--gG 518 (518) |+--.+.++++.++ ..+-+..+.+-.....+. +..+...-..+.. .. T Consensus 388 G~~i~~~~i~e~~G-ip~~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 436 (512) T protein:vir:19 388 GMRIPVSWIQEKLH-IPQPVGDEAVFTIQPVVP---DNGSQKEAALSAEDIPQ 436 (512) T ss_pred CCCCCHHHHHHHhC-CCCCCCccccccCCCccc---cccccccccccccCCCc Confidence 76333445555553 432111111111111100 0000000000000 00 No 262 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=37.05 E-value=1.1 Score=20.27 Aligned_cols=398 Identities=10% Similarity=-0.013 Sum_probs=165.2 Q ss_pred CCcCch-------HHHH--HHHHhcCCCChhhHHhhHHHHhhccchhhhhhhhhhhhhhhccCCCCccccceecCchHHH Q lcl|Aclame:pro 1 MGVWSV-------MTRF--IKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNE 71 (518) Q Consensus 1 ~~~~~~-------~~~~--~~~w~~g~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~ 71 (518) =|..++ .... -.+.|-|+ ...+.++|.+|+.+...+ ++. .. T Consensus 33 dG~s~i~~~~~~~~~~~~~~~~~~gg~-~~n~~eLI~~YR~ma~~~-pEV----------------------------d~ 82 (533) T protein:vir:58 33 GGSSMIPINMYHPFATAGYASRFYGGI-EFNRFFLYDMYDRMDYTD-PLI----------------------------ST 82 (533) T ss_pred CCCccccCCCCcchhhhhhhhhhhccc-cccHHHHHHHHHHhhccC-cch----------------------------hh Confidence 111111 1111 13344444 235556666665543111 010 00 Q ss_pred HHHHHHHH-----HcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEECCe--E-EE Q lcl|Aclame:pro 72 IVVVAAEY-----ISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGR--P-SI 143 (518) Q Consensus 72 i~~~~A~l-----l~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d~~~--i-~i 143 (518) .++.+++- -+..|.++.+...+- .+.+.+.|.++ .+|.++..+.+..+.+-|.+++....++.+ | .+ T Consensus 83 AideIvneaiv~d~~~~pV~v~l~~~e~--s~~iK~kI~~l---ldf~~~~~~~fR~WYVDGriy~Hkiik~~k~GI~el 157 (533) T protein:vir:58 83 VLDIIADECTIPNENGNIVDVVTKDIEL--AKAILSYLDYV---INIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKF 157 (533) T ss_pred HHHhhhceeeEecCCCceeEeecccccc--cHHHHHHHHHH---hcchhhhhHHHHhhhhcceeEEEeccCCcccchhhh Confidence 01111110 122233333322221 22333444444 469999999999999999999987443221 2 34 Q ss_pred EEEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCcccccccccccc Q lcl|Aclame:pro 144 SVHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPE 223 (518) Q Consensus 144 ~~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~ 223 (518) .+++|-++-+. .+..+. . .|++-|..|.+...... . T Consensus 158 r~lDPr~i~~v------------r~~~t~---~---------------------eyyvy~~~~~~~~s~~~---~----- 193 (533) T protein:vir:58 158 QVVSPYIFSKR------------YNPETD---T---------------------WYYVITDVYRNVVSGYF---N----- 193 (533) T ss_pred eecCCeeeEEE------------Eeeccc---e---------------------EEEeecccccccccCcc---c----- Confidence 55555444332 111110 0 11222222221111000 0 Q ss_pred ccccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHhcc---ceee Q lcl|Aclame:pro 224 QITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTK---TKIA 300 (518) Q Consensus 224 ~~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~~g~---~ri~ 300 (518) -.++++. +.|.-- -..+..+|+++|-+..|+-.+..|=-.-+. +-.+|.++ +||| T Consensus 194 --------~kI~~da----------I~y~~S---Gl~d~~~~~iisyLhkAiKp~NQLkmiEDA-lVIYRisRAPeRRvF 251 (533) T protein:vir:58 194 --------EDIPEED----------VIHFSH---KIDTNFFPYGRSYLESARAIWNQLRLMEDA-LMLYRVVRSVDRRVF 251 (533) T ss_pred --------cccchhh----------eeeeee---ccccCCCCceehhhhHHHHHHHHHHHHHHH-HHHHhhcCChhheEE Confidence 0111111 122111 113345678999999987777666443333 33445544 5665 Q ss_pred e-chhhhccCCCCC-------ccccccCCC------cchhhee---eecCCcC----CCCCCCccceEecccccHHHHHH Q lcl|Aclame:pro 301 A-SERMFRKKVNKS-------TDKEEWSMN------VDEDYFM---QFKGTLD----AGAKLNDMIQFMQGDFRDGSYRE 359 (518) Q Consensus 301 v-~~~~l~~~~~~~-------~~~~~~~~d------~d~~~~~---~~~~~~~----~~~~~~~~i~~~~~~ir~~~~~~ 359 (518) - .-.=|++....+ ....+...| .|++.|+ .+..++. .|+. ...|+.+. .-+ -.-++ T Consensus 252 YIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgr-gTEI~TLp-Gg~-lgeme 328 (533) T protein:vir:58 252 YVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRR-AVEIDILQ-GSK-VDLAE 328 (533) T ss_pred EEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCc-cceeeecC-CCC-CCcHH Confidence 2 211111110000 000001111 1112222 1111110 1222 23344443 223 34567 Q ss_pred HHHHHHHHHHHHhCCCccccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCc Q lcl|Aclame:pro 360 TMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDE 439 (518) Q Consensus 360 ~i~~~l~~i~~~~G~s~~tf~~d~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~ 439 (518) .++.+.+.+....+.+.+-+..+++-.-++||....-+-...+.+.|..+ .+++..-|. .++. ... T Consensus 329 DV~YF~kkLy~ALnVP~sRl~~e~~fgr~~eItRDEiKF~KFI~rLR~rF----~~ll~~qLi---------lk~i-it~ 394 (533) T protein:vir:58 329 DVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNNTIKRIQGFF----VEELERMVR---------MNKE-FAD 394 (533) T ss_pred HHHHHHHHHHHHhCCCeeecCCCCCCccchhhhHHHHHHHHHHHHHHHHH----HHHHhcccc---------cccC-cch Confidence 78888889999999998888776544445666555433333344444333 333332221 1232 333 Q ss_pred eeeEEEeCCCCCCCHHHHHHHHHHH-----HhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCc- Q lcl|Aclame:pro 440 IRVIIEFPDPMSVNLNELSSTLNNM-----NSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGM- 513 (518) Q Consensus 440 ~~v~v~f~D~i~~d~~~~~~~~~~~-----~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~- 513 (518) .+..++|...-.-.+...++.+... ...+.+++.+..+.. -..+||... +.+.|++|....--+.|...+.. T Consensus 395 eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~I-Lr~tdei~~-q~e~ie~E~~~~~~~~~~~~~e~~ 472 (533) T protein:vir:58 395 QDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNI-LQIPYDLKP-QEEVAEAAGGGGLFDTGGFGEETT 472 (533) T ss_pred hheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH-hcCChhhhH-HHHHHHHhhcCCCCCCCCcccccC Confidence 4566777643333332222222211 122567776544443 356775443 44668888554333332211111 Q ss_pred ----CCCCC Q lcl|Aclame:pro 514 ----ETKGG 518 (518) Q Consensus 514 ----~~~gG 518 (518) .++.| T Consensus 473 ~~~~~~~~~ 481 (533) T protein:vir:58 473 PADFLGERG 481 (533) T ss_pred CcccCcccc Confidence 11111 No 263 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=21.24 E-value=2.6 Score=18.28 Aligned_cols=390 Identities=11% Similarity=0.047 Sum_probs=154.2 Q ss_pred HHHHHHHHh-cCCCChhhHHhhHHH-HhhccchhhhhhhhhhhhhhhccC-CCCccc---------cc----e-ecCchH Q lcl|Aclame:pro 7 MTRFIKGWL-NGKPNGSEPELIPKY-LPLVPDNQKEWSKDSYLTSLWAQG-YVPTVH---------DK----L-MNSGTG 69 (518) Q Consensus 7 ~~~~~~~w~-~g~p~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~---------~~----~-~~~~l~ 69 (518) |+.-| |= .|+|-. .....+. -+.+... ... ..+|+.. +++... .+ . ...-+. T Consensus 1 m~~~i--~~~~g~p~~--~~~~~~~~~~~ia~~------~~~-~~~~~~~~~~~~~~~iLr~~~~~~~~y~~m~~D~~i~ 69 (491) T protein:vir:10 1 MSKGL--WVSPTEFVT--FGEPDKSLSSQIATR------ARS-IDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVG 69 (491) T ss_pred CCCce--eCCCCCccC--cccCChHHHHHHHhh------hcc-cccccccCCccchHHHHHhcCCCHHHHHHHhhChHHH Confidence 33333 10 122210 0000000 0000000 000 0011000 000000 00 0 011123 Q ss_pred HHHHHHHHHHHcCCcceEEeccccccchHHHHHHHHHHHhhcChHHHHHHHHHHHHhhCCEEEEEEEE--CCeE---EEE Q lcl|Aclame:pro 70 NEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL--NGRP---SIS 144 (518) Q Consensus 70 ~~i~~~~A~ll~~e~~~i~v~~~~~~~d~~~~~~l~~vl~dn~f~~~~~~~~e~~~a~G~~~~k~~~d--~~~i---~i~ 144 (518) ..+-. .-.-|.+-+..|.-.. +++...+.+.+.++.-.|...+.+.+ ++...|-.++-..|. ++.+ ++. T Consensus 70 s~l~~-Rk~av~~~~w~i~~~~----~~~~~~e~v~e~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~ 143 (491) T protein:vir:10 70 GCVRR-RKAAVKALEWGLDRGK----AKSRVAKSIADVFADLDLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVV 143 (491) T ss_pred HHHHH-HHHHHhCCCcEEecCC----CCHHHHHHHHHHHhcCCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEee Confidence 33333 3344556555554321 23456678888888878887776655 688888888887774 2221 222 Q ss_pred EEcCCeeEEEEEcCcEEEEEEEEEEEecCceEEEEEEEEeecccceeeeeeccceEEEEEEEeccCCccccccccccccc Q lcl|Aclame:pro 145 VHSSSQFWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQ 224 (518) Q Consensus 145 ~v~ad~~~P~~~~g~~~~~~f~~~~~~~~~~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~ 224 (518) ++++..|.+.. ++. . .|+..++. . . ++. T Consensus 144 ~r~~~~f~~d~-~~~-----------------------------------------l---~~~~~~~~-~--~----g~~ 171 (491) T protein:vir:10 144 GKPADWFVYDP-ENQ-----------------------------------------L---RFRSKDHW-M--Q----GEE 171 (491) T ss_pred eecccceeecc-CCc-----------------------------------------e---EEecCCCC-C--C----cce Confidence 33332222110 000 0 01111100 0 0 000 Q ss_pred cccccccccCcccceeecCCCcceEEEecCcccCccccCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH-hccceeeech Q lcl|Aclame:pro 225 ITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE-KTKTKIAASE 303 (518) Q Consensus 225 ~~~~~~~~~~~~~~~~~tg~~~~~~~~~~n~~~N~~~~~sPlG~S~~~~~~~~i~~lD~~~s~~~~e~~-~g~~ri~v~~ 303 (518) ++ +.-|+++.... ..++|+|.|.+..|.-..---+..+..|+.=.+ .|.+-++.- T Consensus 172 ---------l~---------~~k~i~~~~~~-----~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igk- 227 (491) T protein:vir:10 172 ---------LP---------ARKFLVPRQEA-----TYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGK- 227 (491) T ss_pred ---------ec---------CCCEEEEEecC-----CCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe- Confidence 00 11133443322 346789999999998766666656666654443 355433321 Q ss_pred hhhccCCCCCccccccCCCcchhheeeecCCcCCCCCCCccceEeccccc---HHHHHHHHHHHHHHHHHHhCCCccccc Q lcl|Aclame:pro 304 RMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFR---DGSYRETMEYFAQKAVSKSGYNPATFN 380 (518) Q Consensus 304 ~~l~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ir---~~~~~~~i~~~l~~i~~~~G~s~~tf~ 380 (518) .. .+.+...+ +.-.+....+..+...--.....|+.++...+ .+.|.+.++.+=+.|+..+ ++ +|++ T Consensus 228 ----y~-~~a~~~ek---~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i-LG-qtlT 297 (491) T protein:vir:10 228 ----HP-RSASDGEK---NLLLDCLEDMVQDAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIAL-LG-QNQT 297 (491) T ss_pred ----cC-CCCCHHHH---HHHHHHHHHHhcCcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHH-hh-hhcc Confidence 11 11110000 00001111111111111122234555554432 2335444544444444443 33 4555 Q ss_pred cC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCcCCceeeEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 381 LG-NREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSS 459 (518) Q Consensus 381 ~d-~~~~TAtEi~s~~~~t~~t~~~~~~~~~~~l~~li~~il~l~~~~~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~ 459 (518) .+ ++...+.++..+-. -.-++.-+..+...+.+++.-++.+ | +.... .+.+.|.+. ..+.++.++ T Consensus 298 t~~~gs~a~~~vh~~v~--~di~~~D~~~i~~tln~li~~l~~~-----N----~~~~~--~p~f~~~~~-~e~~~~~a~ 363 (491) T protein:vir:10 298 TEATSTRASAQAGLEVT--DDIRDGDKAVVSEAMNMLIRWICDL-----N----FDGAD--RPVFDMWEQ-EQVDEIQAG 363 (491) T ss_pred cCcccchhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh-----c----CCCCC--cceEEecCc-CchhHHHHH Confidence 43 33333444433322 2233445566777777777665543 1 11111 255777753 344467899 Q ss_pred HHHHHHhCCCCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccccCCCCchhccCcCCCCC Q lcl|Aclame:pro 460 TLNNMNSALAMSVEEKVKLIHPKWEDEEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) Q Consensus 460 ~~~~~~~aG~~S~~~~v~~~~~~~~eeea~eev~rI~~E~~~~~~~dp~~~~~~~~~gG 518 (518) .+.+++..|+--.+.++++.++ ..+.+..++....+..+ +..+..+......+- T Consensus 364 ~~~~L~~~G~~i~~~~i~e~~G-ip~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 417 (491) T protein:vir:10 364 RDQKLTQAGARFTPAYFKRAYN-LQDGDLDERPLPVSAVD----TVGAASFAEFEAPDQ 417 (491) T ss_pred HHHHHHhCCCcCCHHHHHHHhC-CCCCCcCccccccCCCC----CcccccccccCCCCC Confidence 9999999998444555666553 43322222211100000 000011111111111 Done!