BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:80149|NCBI_annot:hypothetical protein|genbank:acc:YP_001425610;genbank:gi:155042943;genbank:GeneID:5 469578 (193 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hy... 400 e-114 gi|5735|lcl|protein:vir:95370 Length: 194 # NCBI annotation: maj... 383 e-109 gi|17556|lcl|protein:vir:968 Length: 202 # NCBI annotation: Orf5... 172 2e-45 gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: pu... 144 9e-37 gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hyp... 72 6e-15 gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hyp... 49 5e-08 gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: pu... 43 3e-06 gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: ma... 43 3e-06 gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: ma... 43 3e-06 gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: ma... 43 3e-06 gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: maj... 37 1e-04 gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: ph... 35 7e-04 gi|17700|lcl|protein:vir:9314 Length: 193 # NCBI annotation: str... 23 2.8 gi|7654|lcl|protein:vir:96352 Length: 193 # NCBI annotation: ORF... 23 3.3 gi|11600|lcl|protein:vir:78825 Length: 193 # NCBI annotation: ma... 23 3.3 gi|9840|lcl|protein:vir:103919 Length: 193 # NCBI annotation: ma... 23 3.4 gi|7311|lcl|protein:vir:96224 Length: 193 # NCBI annotation: ORF... 23 3.4 gi|9299|lcl|protein:vir:97120 Length: 193 # NCBI annotation: ORF... 23 3.4 gi|2790|lcl|protein:vir:99775 Length: 193 # NCBI annotation: hyp... 23 3.5 gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: ter... 22 5.9 gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp... 22 6.1 gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp1... 22 6.9 >gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425610;genbank:gi:155042943;genbank:Ge neID:5469578 Length = 193 Score = 400 bits (1027), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 1 MTVPTSNKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDS 60 MTVPTSNKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDS Sbjct: 1 MTVPTSNKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDS 60 Query: 61 AYYSEATNNGYDGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPFALLFEFQGDKK 120 AYYSEATNNGYDGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPFALLFEFQGDKK Sbjct: 61 AYYSEATNNGYDGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPFALLFEFQGDKK 120 Query: 121 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS 180 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS Sbjct: 121 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS 180 Query: 181 WYTQVHVKGSTGA 193 WYTQVHVKGSTGA Sbjct: 181 WYTQVHVKGSTGA 193 >gi|5735|lcl|protein:vir:95370 Length: 194 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764482;genbank:gi:115334636;genbank:GeneI D:5179257 Length = 194 Score = 383 bits (984), Expect = e-109, Method: Compositional matrix adjust. Identities = 183/191 (95%), Positives = 188/191 (98%) Query: 1 MTVPTSNKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDS 60 MT P++NKIKYGLRNVHYAVITEDP TGAITYGTPKRIPGAVSL+LEPAGETFDFYADDS Sbjct: 1 MTAPSTNKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDS 60 Query: 61 AYYSEATNNGYDGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPFALLFEFQGDKK 120 AYYSEATNNGYDGELE+ANLTDEFRIDVLGDTY NGVMYENADQVTKPFALLFEFQGDKK Sbjct: 61 AYYSEATNNGYDGELEVANLTDEFRIDVLGDTYENGVMYENADQVTKPFALLFEFQGDKK 120 Query: 121 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS 180 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS Sbjct: 121 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS 180 Query: 181 WYTQVHVKGST 191 WYTQVHVKG+T Sbjct: 181 WYTQVHVKGAT 191 >gi|17556|lcl|protein:vir:968 Length: 202 # NCBI annotation: Orf50 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076622;genbank:gi:13095730;genbank:GeneID :920287 Length = 202 Score = 172 bits (436), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/184 (46%), Positives = 118/184 (64%), Gaps = 1/184 (0%) Query: 7 NKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEA 66 NK+++GL NV++A T D +GA TY P R PGAV LSLE +G+ F AD+ YY Sbjct: 7 NKVEFGLENVYFARATTDLLSGATTYEKPIRWPGAVELSLEASGDLIKFKADNIDYYISG 66 Query: 67 TNNGYDGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPFALLFEFQGDKKAKRHVL 126 N GYDG+L A + +EF +LG+ GV E ++ T PFAL+F+F+GDKKA RHVL Sbjct: 67 NNQGYDGKLTTALVPEEFATKILGEVVEGGVQTEYSNVETSPFALMFQFEGDKKATRHVL 126 Query: 127 YYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDSWYTQVH 186 Y C ASRP+V G + + +P T+ L+F+A PRP K VK T P+ + +YD+W+ V+ Sbjct: 127 YNCSASRPSV-GSSTIDKGDPNTTELSFSASPRPSDKAVKTKTRPDTEPTVYDAWFNSVY 185 Query: 187 VKGS 190 K S Sbjct: 186 DKNS 189 >gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: putative major capsid protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285818;genbank:gi:148747739;genbank:Ge neID:5247194 Length = 195 Score = 144 bits (362), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 115/197 (58%), Gaps = 7/197 (3%) Query: 1 MTVPTSNKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDS 60 M + NK+ +GL NVH A + D AT + + TP +IPGAV + EP GE FYAD+ Sbjct: 1 MNKMSQNKVTFGLDNVHIAFLI-DGATPS--WETPVKIPGAVRFAPEPQGEESTFYADNG 57 Query: 61 AYYSEATNNGYDGELELANLTDEFRIDVLG-DTYVNGVMYENADQVTKPFALLFEFQGDK 119 Y+S +NNGY ELE+ANL D+ ++LG + NG++ E D K FALL + GDK Sbjct: 58 PYFSYTSNNGYTAELEMANLPDDILAEMLGWEIDANGMLVETTDGTPKEFALLGQILGDK 117 Query: 120 KAKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEI---DQA 176 K +R V Y CKASRPT T+ E+ EP T TLN T P + E+ +QA Sbjct: 118 KNRRFVYYRCKASRPTAEHNTRGESVEPTTQTLNITILPIEIGGKNVVRGVLELNDTNQA 177 Query: 177 LYDSWYTQVHVKGSTGA 193 +YD++++ V V G+T Sbjct: 178 IYDNFFSTVTVPGATAG 194 >gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690767;genbank:gi:22855007;genbank:GeneID :955222 Length = 200 Score = 71.6 bits (174), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 15/188 (7%) Query: 7 NKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEA 66 K+ GL H A + +D + + P+ +PGAVS+ L+P ET FYAD+ A+ + Sbjct: 2 GKVLSGLDMFHIAEVLKD-TKDELEFSVPEELPGAVSMKLDPKSETETFYADNGAFAQLS 60 Query: 67 TNNGYDGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPFALLFEFQGDKKAKRHVL 126 + DGE+E+A+L + + + G T G+ + +AD T AL F + R+ Sbjct: 61 SLGDIDGEMEVADLPLDMQAKIFGKTVEGGIHFSSADDRTLEIALGFRAKISTGGYRY-- 118 Query: 127 YYCKASRPT---VAGQTKAENTEPQTSTLNFTARPRPDTK------EVKADTTPEIDQAL 177 Y+ +P V +T+ PQ + + P + K E KA+ I+ Sbjct: 119 YWALKGKPELVPVEHKTEEGKPSPQPTQVKIKFSPLTNLKKGKKRWEAKAEEGNGINA-- 176 Query: 178 YDSWYTQV 185 ++W+ QV Sbjct: 177 -ETWFKQV 183 >gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795472;genbank:gi:28876219;genbank:GeneID :1257763 Length = 203 Score = 48.9 bits (115), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 69/159 (43%), Gaps = 9/159 (5%) Query: 7 NKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEA 66 K+K+GLR+ +Y V+ + G K +PG S L+ E ADD Y Sbjct: 2 GKVKFGLRDFYYGVLDDKDMVKDKGAGI-KHLPGMKSAKLDITNELVTVSADDGPYV--V 58 Query: 67 TNNGY---DGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPFALLFEFQGDK-KAK 122 + G E+E+ +LT + R D G T GV N K A +F + KA Sbjct: 59 LSGGITETKLEIEVLDLTSDARKDFFGITVEKGVEKYNRSLTPKDIACVFRTSDENGKAI 118 Query: 123 RHVLYYCKASRPTVAGQTK--AENTEPQTSTLNFTARPR 159 L K + P + QTK A + +P + T NF AR + Sbjct: 119 WVGLLKGKFNLPGMEAQTKEGAPDPKPDSVTGNFVARGK 157 >gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459974;genbank:gi:85701389;genbank:GeneID :3882150 Length = 202 Score = 42.7 bits (99), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 6/182 (3%) Query: 12 GLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEATNNGY 71 G+ N+ YA + +D ++ AI Y K++ GAV + L + ++D+ ++ Sbjct: 13 GVDNLVYAKVLQDDSS-AIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 Query: 72 DGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPF-ALLFEFQGDKKAKRHV-LYYC 129 + E+E+ L+ + D+ G V + + + KP+ A+ F F R+V L Sbjct: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 Query: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 Query: 187 VK 188 K Sbjct: 192 EK 193 >gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338193;genbank:gi:77020189;genbank:GeneID :3703750 Length = 202 Score = 42.7 bits (99), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 6/182 (3%) Query: 12 GLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEATNNGY 71 G+ N+ YA + +D ++ AI Y K++ GAV + L + ++D+ ++ Sbjct: 13 GVDNLVYAKVLQDDSS-AIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 Query: 72 DGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPF-ALLFEFQGDKKAKRHV-LYYC 129 + E+E+ L+ + D+ G V + + + KP+ A+ F F R+V L Sbjct: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 Query: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 Query: 187 VK 188 K Sbjct: 192 EK 193 >gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338142;genbank:gi:77020241;genbank:GeneID :3703754 Length = 202 Score = 42.7 bits (99), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 6/182 (3%) Query: 12 GLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEATNNGY 71 G+ N+ YA + +D ++ AI Y K++ GAV + L + ++D+ ++ Sbjct: 13 GVDNLVYAKVLQDDSS-AIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 Query: 72 DGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPF-ALLFEFQGDKKAKRHV-LYYC 129 + E+E+ L+ + D+ G V + + + KP+ A+ F F R+V L Sbjct: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 Query: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 Query: 187 VK 188 K Sbjct: 192 EK 193 >gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512320;genbank:gi:89152489;genbank:GeneID :3953030 Length = 202 Score = 42.7 bits (99), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 6/182 (3%) Query: 12 GLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEATNNGY 71 G+ N+ YA + +D ++ AI Y K++ GAV + L + ++D+ ++ Sbjct: 13 GVDNLVYAKVLQDDSS-AIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 Query: 72 DGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPF-ALLFEFQGDKKAKRHV-LYYC 129 + E+E+ L+ + D+ G V + + + KP+ A+ F F R+V L Sbjct: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 Query: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 Query: 187 VK 188 K Sbjct: 192 EK 193 >gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612840;genbank:gi:20065974;genbank:GeneID :935777 Length = 198 Score = 37.0 bits (84), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/191 (19%), Positives = 81/191 (42%), Gaps = 10/191 (5%) Query: 7 NKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEA 66 N + G ++++ A++ ++ AT T TP ++ A++ + +DD+ + Sbjct: 6 NTRRCGCKDIYIAIVNKNTATEYAT-ATPIKLGRALNAKVTTKKTVESTESDDTIEETFE 64 Query: 67 TNNGYDGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPFALLFEFQGDKKAKRHVL 126 + + + E ++ L+ E + + G TY +G + N D K A+ + + V Sbjct: 65 SFDSIEIEFDVNKLSPEQKAILRGATYEDGFLINNVDDQAKEVAIGWRARQTNGKYEFVW 124 Query: 127 YYCKASRPTVAGQTKAENTEPQTSTLN----FTARPRPDTKEVKADTTPEID-----QAL 177 YYC Q + +P+T T F R + ++ D T ++ ++ Sbjct: 125 YYCGKFNSGWDDQYETNGKKPKTQTDKMKGTFYGRQKDGNTSIEVDETFLLESHNDAKSS 184 Query: 178 YDSWYTQVHVK 188 +W+++V K Sbjct: 185 ITNWFSKVQEK 195 >gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: phage major tail protein, phi13 family subfamily # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699936;genbank:gi:110804026;genbank:GeneI D:4206655 Length = 210 Score = 34.7 bits (78), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Query: 20 VITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEATNNGYDGELELAN 79 ++TE+ G I++ TP+ + G + ++P T +Y + + E T + + + Sbjct: 23 LLTEE--IGKISFDTPRYLEGVKQIGIKPKQNTDPYYHEGRKIFDEQTIQDVAVTINITD 80 Query: 80 LTDEFRIDVLGDTYVN-GVMYENADQVTKPFALLFEFQGDKKAKRHVLYY 128 LTDE V+G G + N + + A+++E + + ++ + Y Sbjct: 81 LTDEDECYVMGHKLAKTGGVIRNDNDIAPTLAIMYEAEKAQGVTKYGILY 130 >gi|17700|lcl|protein:vir:9314 Length: 193 # NCBI annotation: structural phi Mu50B # Family: family:all:464 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803292;genbank:gi:29028602;genbank:GeneID :1258050 Length = 193 Score = 22.7 bits (47), Expect = 2.8, Method: Compositional matrix adjust. Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 173 IDQALYDSWYTQVHVKGSTG 192 +D+ LY++W + + G G Sbjct: 81 VDRVLYEAWEVESRIPGKNG 100 >gi|7654|lcl|protein:vir:96352 Length: 193 # NCBI annotation: ORF025 # Family: family:all:464 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239653;genbank:gi:66395394;genbank:GeneID :5132828 Length = 193 Score = 22.7 bits (47), Expect = 3.3, Method: Compositional matrix adjust. Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 173 IDQALYDSWYTQVHVKGSTG 192 +D+ LY++W + + G G Sbjct: 81 VDRVLYEAWEVESRIPGKNG 100 >gi|11600|lcl|protein:vir:78825 Length: 193 # NCBI annotation: major tail protein # Family: family:all:464 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285367;genbank:gi:148717895;genbank:Ge neID:5246956 Length = 193 Score = 22.7 bits (47), Expect = 3.3, Method: Compositional matrix adjust. Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 173 IDQALYDSWYTQVHVKGSTG 192 +D+ LY++W + + G G Sbjct: 81 VDRVLYEAWEVESRIPGKNG 100 >gi|9840|lcl|protein:vir:103919 Length: 193 # NCBI annotation: major tail protein # Family: family:all:464 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873998;genbank:gi:118430773;genbank:GeneI D:4525411 Length = 193 Score = 22.7 bits (47), Expect = 3.4, Method: Compositional matrix adjust. Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 173 IDQALYDSWYTQVHVKGSTG 192 +D+ LY++W + + G G Sbjct: 81 VDRVLYEAWEVESRIPGKNG 100 >gi|7311|lcl|protein:vir:96224 Length: 193 # NCBI annotation: ORF023 # Family: family:all:464 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239576;genbank:gi:66395315;genbank:GeneID :5132772 Length = 193 Score = 22.7 bits (47), Expect = 3.4, Method: Compositional matrix adjust. Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 173 IDQALYDSWYTQVHVKGSTG 192 +D+ LY++W + + G G Sbjct: 81 VDRVLYEAWEVESRIPGKNG 100 >gi|9299|lcl|protein:vir:97120 Length: 193 # NCBI annotation: ORF025 # Family: family:all:464 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239731;genbank:gi:66394894;genbank:GeneID :5130853 Length = 193 Score = 22.7 bits (47), Expect = 3.4, Method: Compositional matrix adjust. Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 173 IDQALYDSWYTQVHVKGSTG 192 +D+ LY++W + + G G Sbjct: 81 VDRVLYEAWEVESRIPGKNG 100 >gi|2790|lcl|protein:vir:99775 Length: 193 # NCBI annotation: hypothetical protein # Family: family:all:464 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004313;genbank:gi:122891767;genbank:Ge neID:4712330 Length = 193 Score = 22.7 bits (47), Expect = 3.5, Method: Compositional matrix adjust. Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 173 IDQALYDSWYTQVHVKGSTG 192 +D+ LY++W + + G G Sbjct: 81 VDRVLYEAWEVESRIPGKNG 100 >gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891724;genbank:gi:33620526;genbank:GeneID :1725332 Length = 607 Score = 21.9 bits (45), Expect = 5.9, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Query: 71 YDGELELANLTDEFR--IDVLGDTYVNGVMYENADQV 105 Y G+ E+ ++ FR +D LG+ Y V+Y+ A+ + Sbjct: 559 YAGKDEMRIASEIFRKELDELGEEYAPVVIYDGANGI 595 >gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469498;genbank:gi:157311455;genbank:Ge neID:5602125 Length = 607 Score = 21.9 bits (45), Expect = 6.1, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Query: 71 YDGELELANLTDEFR--IDVLGDTYVNGVMYENADQV 105 Y G+ E+ ++ FR +D LG+ Y V+Y+ A+ + Sbjct: 559 YAGKDEMRIASEIFRKELDELGEEYAPVVIYDGANGI 595 >gi|26945|lcl|protein:vir:5664 Length: 166 # NCBI annotation: gp19 # Family: family:all:1107 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899603;genbank:gi:34419590;genbank:GeneID :2545785 Length = 166 Score = 21.6 bits (44), Expect = 6.9, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 13/28 (46%) Query: 24 DPATGAITYGTPKRIPGAVSLSLEPAGE 51 DP T A YG + G V+L + E Sbjct: 123 DPTTSATVYGIFPTVVGEVALDWDSNNE 150 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.312 0.130 0.378 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,293 Number of Sequences: 514 Number of extensions: 4191 Number of successful extensions: 32 Number of sequences better than 100.0: 27 Number of HSP's better than 100.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 27 length of query: 193 length of database: 206,069 effective HSP length: 67 effective length of query: 126 effective length of database: 171,631 effective search space: 21625506 effective search space used: 21625506 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 35 (18.1 bits)