Query lcl|Aclame:protein:vir:78589|NCBI_annot:NUDIX hydrolase|genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Match_columns 695 No_of_seqs 391 out of 5026 Neff 7.8 Searched_HMMs 1612 Date Mon Dec 2 11:35:01 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_44 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_44_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:78589 Length: 695 100.0 8E-217 5E-220 1205.2 52.4 695 1-695 1-695 (695) 2 protein:vir:106716 Length: 698 100.0 8E-215 5E-218 1194.2 51.2 695 1-695 1-698 (698) 3 protein:vir:3648 Length: 695 # 100.0 4E-214 3E-217 1190.3 52.6 695 1-695 1-695 (695) 4 protein:vir:101541 Length: 694 100.0 1E-211 7E-215 1177.0 53.4 694 1-695 1-694 (694) 5 protein:vir:94049 Length: 532 100.0 7E-128 4E-131 717.8 41.2 521 36-587 1-532 (532) 6 protein:vir:107742 Length: 537 100.0 4E-125 3E-128 702.4 41.8 527 1-584 1-537 (537) 7 protein:vir:96068 Length: 765 100.0 1E-122 8E-126 688.7 46.4 633 1-695 1-759 (765) 8 protein:vir:99563 Length: 862 100.0 1E-122 8E-126 688.9 41.0 597 1-695 1-629 (862) 9 protein:vir:107662 Length: 427 100.0 4E-114 2E-117 642.6 34.2 417 62-556 1-427 (427) 10 protein:vir:5249 Length: 437 # 100.0 2E-113 1E-116 638.4 35.9 432 64-554 1-437 (437) 11 protein:vir:104338 Length: 422 100.0 9E-114 6E-117 640.4 33.6 413 64-532 1-422 (422) 12 protein:vir:79647 Length: 435 100.0 9E-113 5E-116 634.9 34.8 424 49-538 1-435 (435) 13 protein:vir:80040 Length: 461 100.0 4E-104 3E-107 587.3 36.8 430 46-535 1-461 (461) 14 protein:vir:105782 Length: 449 100.0 8.3E-96 5.1E-99 541.9 30.7 423 46-524 1-449 (449) 15 protein:vir:103219 Length: 201 100.0 4.4E-55 2.7E-58 318.6 13.7 201 325-531 1-201 (201) 16 protein:vir:102118 Length: 409 99.7 5.6E-17 3.5E-20 109.7 27.2 393 46-538 1-409 (409) 17 protein:vir:95378 Length: 406 99.6 2.6E-16 1.6E-19 106.0 24.6 398 46-557 1-406 (406) 18 protein:vir:1380 Length: 422 # 99.6 7.3E-16 4.5E-19 103.6 26.7 407 46-540 1-422 (422) 19 protein:vir:102080 Length: 429 99.6 1.3E-15 7.9E-19 102.3 27.6 412 46-555 1-429 (429) 20 protein:vir:102855 Length: 432 99.6 9.5E-16 5.9E-19 102.9 26.7 417 46-552 1-432 (432) 21 protein:vir:105002 Length: 432 99.6 9.5E-16 5.9E-19 102.9 26.7 417 46-552 1-432 (432) 22 protein:vir:107605 Length: 432 99.6 9.5E-16 5.9E-19 102.9 26.7 417 46-552 1-432 (432) 23 protein:vir:8418 Length: 409 # 99.6 2.1E-15 1.3E-18 101.1 23.9 402 46-560 1-409 (409) 24 protein:vir:4454 Length: 414 # 99.6 3.1E-15 1.9E-18 100.1 24.5 398 46-557 1-414 (414) 25 protein:vir:79772 Length: 648 99.6 2.2E-15 1.4E-18 100.9 22.6 572 46-695 1-633 (648) 26 protein:vir:100882 Length: 383 99.6 3.7E-15 2.3E-18 99.7 22.8 369 46-538 1-383 (383) 27 protein:vir:81152 Length: 411 99.5 1.3E-14 8.2E-18 96.7 25.2 394 46-537 1-411 (411) 28 protein:vir:483 Length: 413 # 99.5 8.6E-15 5.3E-18 97.7 24.1 398 46-560 1-413 (413) 29 protein:vir:960 Length: 413 # 99.5 9.7E-15 6E-18 97.4 24.3 401 43-537 1-413 (413) 30 protein:vir:80644 Length: 551 99.5 1.1E-13 7E-17 91.6 29.8 519 21-610 1-551 (551) 31 protein:vir:8100 Length: 466 # 99.5 3.7E-14 2.3E-17 94.2 26.6 447 27-562 1-466 (466) 32 protein:vir:1266 Length: 416 # 99.5 3.1E-14 1.9E-17 94.7 25.2 400 46-554 1-416 (416) 33 protein:vir:63755 Length: 547 99.5 1.8E-13 1.1E-16 90.5 28.9 497 1-610 1-547 (547) 34 protein:vir:3843 Length: 397 # 99.5 2E-14 1.2E-17 95.7 22.4 383 46-555 1-397 (397) 35 protein:vir:7853 Length: 518 # 99.5 1.6E-14 9.8E-18 96.2 20.7 469 51-625 1-518 (518) 36 protein:vir:100187 Length: 385 99.5 4E-14 2.5E-17 94.0 22.7 369 46-524 1-385 (385) 37 protein:vir:5737 Length: 419 # 99.5 1.7E-13 1E-16 90.6 25.8 403 46-562 1-419 (419) 38 protein:vir:81072 Length: 432 99.5 8.4E-14 5.2E-17 92.3 24.1 414 39-561 1-432 (432) 39 protein:vir:8317 Length: 409 # 99.5 8.9E-14 5.5E-17 92.1 23.6 398 21-514 1-409 (409) 40 protein:vir:4337 Length: 434 # 99.5 1.7E-13 1.1E-16 90.6 25.1 418 46-553 1-434 (434) 41 protein:vir:97060 Length: 432 99.5 1E-13 6.2E-17 91.9 23.6 415 39-561 1-432 (432) 42 protein:vir:80333 Length: 419 99.5 3.1E-13 1.9E-16 89.1 26.2 406 46-564 1-419 (419) 43 protein:vir:2683 Length: 412 # 99.5 1.8E-13 1.1E-16 90.5 24.5 399 52-551 1-412 (412) 44 protein:vir:100249 Length: 431 99.4 4.2E-13 2.6E-16 88.4 26.0 415 46-552 1-431 (431) 45 protein:vir:6240 Length: 457 # 99.4 4.3E-13 2.6E-16 88.4 25.8 436 46-573 1-457 (457) 46 protein:vir:80134 Length: 403 99.4 2.1E-13 1.3E-16 90.1 23.7 394 46-553 1-403 (403) 47 protein:vir:189 Length: 424 # 99.4 4.3E-13 2.7E-16 88.4 25.3 409 37-536 1-424 (424) 48 protein:vir:93610 Length: 454 99.4 4.4E-13 2.7E-16 88.3 24.7 434 33-592 1-454 (454) 49 protein:vir:94426 Length: 409 99.4 4.2E-13 2.6E-16 88.4 24.5 397 46-551 1-409 (409) 50 protein:vir:93943 Length: 409 99.4 3.5E-13 2.2E-16 88.9 23.7 395 46-551 1-409 (409) 51 protein:vir:4598 Length: 416 # 99.4 4E-13 2.5E-16 88.6 24.0 400 67-553 1-416 (416) 52 protein:vir:81095 Length: 416 99.4 4E-13 2.5E-16 88.6 24.0 400 67-553 1-416 (416) 53 protein:vir:1326 Length: 457 # 99.4 5.6E-13 3.4E-16 87.8 24.7 433 46-587 1-457 (457) 54 protein:vir:1431 Length: 419 # 99.4 1.3E-12 7.8E-16 85.8 26.2 405 46-564 1-419 (419) 55 protein:vir:10362 Length: 432 99.4 4.8E-13 3E-16 88.1 23.7 414 39-561 1-432 (432) 56 protein:vir:1884 Length: 424 # 99.4 1.2E-12 7.5E-16 85.9 25.7 409 37-536 1-424 (424) 57 protein:vir:3153 Length: 467 # 99.4 8.2E-13 5.1E-16 86.8 24.3 395 115-573 1-467 (467) 58 protein:vir:96980 Length: 409 99.4 3.9E-13 2.4E-16 88.6 22.2 395 46-551 1-409 (409) 59 protein:vir:105064 Length: 421 99.4 2.2E-12 1.4E-15 84.5 25.9 407 46-562 1-421 (421) 60 protein:vir:100150 Length: 437 99.4 1.5E-12 9.4E-16 85.4 24.9 421 46-560 1-437 (437) 61 protein:vir:4952 Length: 386 # 99.4 5.3E-13 3.3E-16 87.9 22.4 371 46-528 1-386 (386) 62 protein:vir:101648 Length: 518 99.4 2.9E-13 1.8E-16 89.4 20.9 476 46-625 1-518 (518) 63 protein:vir:4509 Length: 424 # 99.4 2E-12 1.2E-15 84.7 25.3 408 46-555 1-424 (424) 64 protein:vir:7987 Length: 456 # 99.4 3.3E-13 2.1E-16 89.0 20.5 400 77-543 1-456 (456) 65 protein:vir:100691 Length: 535 99.4 8.5E-12 5.3E-15 81.3 27.7 498 27-588 1-535 (535) 66 protein:vir:95599 Length: 563 99.4 2.7E-12 1.7E-15 84.0 24.7 504 27-600 1-563 (563) 67 protein:vir:99312 Length: 563 99.4 2.7E-12 1.7E-15 84.0 24.7 504 27-600 1-563 (563) 68 protein:vir:9359 Length: 348 # 99.4 7.8E-13 4.8E-16 87.0 21.7 336 128-551 1-348 (348) 69 protein:vir:96579 Length: 576 99.3 1.6E-11 9.9E-15 79.8 28.4 506 23-601 1-576 (576) 70 protein:vir:105819 Length: 456 99.3 1.1E-12 7.1E-16 86.0 21.9 404 37-543 1-456 (456) 71 protein:vir:102602 Length: 456 99.3 1.1E-12 7.1E-16 86.0 21.9 404 37-543 1-456 (456) 72 protein:vir:101647 Length: 460 99.3 6.2E-12 3.8E-15 82.0 24.7 424 46-540 1-460 (460) 73 protein:vir:80796 Length: 574 99.3 1.1E-11 6.6E-15 80.8 25.3 529 21-606 1-574 (574) 74 protein:vir:4995 Length: 384 # 99.2 4.1E-12 2.6E-15 83.0 20.4 364 46-515 1-384 (384) 75 protein:vir:3868 Length: 417 # 99.2 2.7E-11 1.7E-14 78.5 24.6 402 67-560 1-417 (417) 76 protein:vir:81218 Length: 423 99.2 1.4E-11 8.5E-15 80.1 22.8 398 46-556 1-423 (423) 77 protein:vir:9702 Length: 406 # 99.2 1.6E-11 1E-14 79.7 22.5 395 46-556 1-406 (406) 78 protein:vir:4854 Length: 386 # 99.2 1.9E-11 1.2E-14 79.3 22.7 372 46-529 1-386 (386) 79 protein:vir:9408 Length: 441 # 99.2 3.7E-11 2.3E-14 77.8 24.1 420 46-553 1-441 (441) 80 protein:vir:79984 Length: 441 99.2 3.7E-11 2.3E-14 77.8 24.1 420 46-553 1-441 (441) 81 protein:vir:9507 Length: 395 # 99.2 1.4E-11 8.4E-15 80.2 21.7 377 67-555 1-395 (395) 82 protein:vir:100650 Length: 395 99.2 1.4E-11 8.4E-15 80.2 21.7 377 67-555 1-395 (395) 83 protein:vir:101289 Length: 395 99.2 1.4E-11 8.4E-15 80.2 21.7 377 67-555 1-395 (395) 84 protein:vir:104259 Length: 403 99.2 2.1E-11 1.3E-14 79.1 22.3 393 79-555 1-403 (403) 85 protein:vir:4828 Length: 382 # 99.2 3.4E-11 2.1E-14 78.0 23.0 368 46-528 1-382 (382) 86 protein:vir:98396 Length: 441 99.2 5.4E-11 3.4E-14 76.9 23.8 419 46-553 1-441 (441) 87 protein:vir:7407 Length: 392 # 99.1 1.4E-10 8.9E-14 74.6 23.7 379 44-542 1-392 (392) 88 protein:vir:3989 Length: 392 # 99.1 1.9E-10 1.2E-13 73.9 24.1 379 44-542 1-392 (392) 89 protein:vir:1023 Length: 392 # 99.1 1.9E-10 1.2E-13 73.9 24.1 379 44-542 1-392 (392) 90 protein:vir:4156 Length: 542 # 99.1 5E-10 3.1E-13 71.6 26.3 488 46-642 1-542 (542) 91 protein:vir:6210 Length: 394 # 99.1 3.9E-10 2.4E-13 72.2 24.6 384 46-554 1-394 (394) 92 protein:vir:94666 Length: 723 99.1 2.1E-09 1.3E-12 68.1 29.2 455 81-695 1-482 (723) 93 protein:vir:78641 Length: 278 99.1 1.7E-10 1.1E-13 74.1 21.7 268 128-464 1-278 (278) 94 protein:vir:1082 Length: 359 # 99.1 1.1E-09 6.6E-13 69.8 25.2 348 46-504 1-359 (359) 95 protein:vir:1661 Length: 378 # 99.0 9E-11 5.6E-14 75.7 19.1 361 77-553 1-378 (378) 96 protein:vir:94002 Length: 378 99.0 1.5E-10 9E-14 74.5 19.8 362 77-553 1-378 (378) 97 protein:vir:93867 Length: 378 99.0 1E-10 6.5E-14 75.3 18.8 362 77-553 1-378 (378) 98 protein:vir:4194 Length: 540 # 99.0 1.4E-09 8.7E-13 69.1 23.4 488 46-642 1-540 (540) 99 protein:vir:78310 Length: 376 99.0 7.5E-10 4.7E-13 70.6 21.7 362 67-535 1-376 (376) 100 protein:vir:95965 Length: 385 99.0 4.9E-10 3E-13 71.6 20.5 367 67-540 1-385 (385) 101 protein:vir:98444 Length: 434 99.0 7.4E-10 4.6E-13 70.6 21.0 386 105-558 1-434 (434) 102 protein:vir:99072 Length: 479 98.9 4.5E-09 2.8E-12 66.3 23.1 437 74-587 1-479 (479) 103 protein:vir:9641 Length: 395 # 98.9 3.4E-09 2.1E-12 67.0 21.6 378 67-536 1-395 (395) 104 protein:vir:389 Length: 530 # 98.9 2.5E-08 1.5E-11 62.3 26.3 454 37-568 1-530 (530) 105 protein:vir:99916 Length: 504 98.8 2.9E-08 1.8E-11 61.9 26.4 443 80-577 1-504 (504) 106 protein:vir:94101 Length: 474 98.8 3.2E-08 2E-11 61.7 26.8 411 67-557 1-474 (474) 107 protein:vir:105889 Length: 474 98.8 3.2E-08 2E-11 61.7 26.8 411 67-557 1-474 (474) 108 protein:vir:79538 Length: 502 98.8 1.1E-08 6.7E-12 64.3 22.4 451 31-570 1-502 (502) 109 protein:vir:94869 Length: 378 98.8 2E-09 1.2E-12 68.3 17.8 361 67-553 1-378 (378) 110 protein:vir:102727 Length: 945 98.8 6E-08 3.7E-11 60.2 26.0 520 27-695 1-584 (945) 111 protein:vir:10321 Length: 495 98.7 4.5E-08 2.8E-11 60.9 23.7 434 52-560 1-495 (495) 112 protein:vir:78227 Length: 480 98.7 1.9E-08 1.2E-11 63.0 21.5 431 79-572 1-480 (480) 113 protein:vir:105292 Length: 478 98.7 7.1E-08 4.4E-11 59.8 27.5 406 57-555 1-478 (478) 114 protein:vir:9568 Length: 410 # 98.7 3.2E-08 2E-11 61.7 21.8 353 90-527 1-410 (410) 115 protein:vir:96738 Length: 505 98.7 1.1E-07 6.5E-11 58.8 24.5 445 37-572 1-505 (505) 116 protein:vir:7768 Length: 484 # 98.7 6.3E-08 3.9E-11 60.1 22.7 436 37-579 1-484 (484) 117 protein:vir:94742 Length: 409 98.7 6.4E-08 4E-11 60.0 22.6 364 97-504 1-409 (409) 118 protein:vir:79150 Length: 368 98.7 4.6E-08 2.9E-11 60.8 21.5 345 46-477 1-368 (368) 119 protein:vir:858 Length: 378 # 98.6 9.6E-09 6E-12 64.5 17.0 361 67-553 1-378 (378) 120 protein:vir:8184 Length: 474 # 98.6 1.2E-07 7.4E-11 58.5 22.7 419 64-540 1-474 (474) 121 protein:vir:94498 Length: 474 98.6 1.9E-07 1.2E-10 57.5 27.9 410 69-564 1-474 (474) 122 protein:vir:97447 Length: 474 98.6 1.9E-07 1.2E-10 57.5 27.9 410 69-564 1-474 (474) 123 protein:vir:95806 Length: 440 98.6 5.6E-08 3.5E-11 60.3 20.6 382 92-553 1-440 (440) 124 protein:vir:98643 Length: 395 98.6 1.3E-07 8E-11 58.4 22.4 377 67-556 1-395 (395) 125 protein:vir:2500 Length: 501 # 98.6 2.3E-07 1.4E-10 57.0 23.3 428 60-568 1-501 (501) 126 protein:vir:1634 Length: 409 # 98.6 1.1E-07 6.9E-11 58.7 21.3 362 97-504 1-409 (409) 127 protein:vir:1236 Length: 483 # 98.6 2.6E-07 1.6E-10 56.7 28.6 430 46-555 1-483 (483) 128 protein:vir:99452 Length: 651 98.6 2.7E-07 1.7E-10 56.6 26.1 531 46-659 1-651 (651) 129 protein:vir:2427 Length: 485 # 98.6 2.8E-07 1.7E-10 56.5 23.2 420 60-568 1-485 (485) 130 protein:vir:93747 Length: 472 98.6 2.9E-07 1.8E-10 56.5 26.7 423 38-564 1-472 (472) 131 protein:vir:3420 Length: 533 # 98.6 2.9E-07 1.8E-10 56.4 24.3 459 37-568 1-533 (533) 132 protein:vir:104082 Length: 485 98.6 3E-07 1.9E-10 56.3 24.2 420 77-568 1-485 (485) 133 protein:vir:99522 Length: 470 98.5 3.3E-07 2E-10 56.1 25.3 406 46-555 1-470 (470) 134 protein:vir:102330 Length: 451 98.5 3.4E-07 2.1E-10 56.1 23.8 394 52-539 1-451 (451) 135 protein:vir:78191 Length: 351 98.5 3.4E-07 2.1E-10 56.0 23.8 332 46-470 1-351 (351) 136 protein:vir:78537 Length: 480 98.5 1.5E-07 9.3E-11 58.0 20.8 418 79-587 1-480 (480) 137 protein:vir:4089 Length: 395 # 98.5 1.6E-07 9.7E-11 57.9 20.8 380 67-558 1-395 (395) 138 protein:vir:1150 Length: 350 # 98.5 3E-07 1.9E-10 56.3 22.2 331 1-464 1-350 (350) 139 protein:vir:9751 Length: 422 # 98.5 1.3E-07 8.1E-11 58.3 20.0 354 92-526 1-422 (422) 140 protein:vir:102950 Length: 471 98.5 4.3E-07 2.6E-10 55.5 24.7 379 92-557 1-471 (471) 141 protein:vir:9871 Length: 429 # 98.5 4.5E-07 2.8E-10 55.4 27.6 375 92-557 1-429 (429) 142 protein:vir:6382 Length: 553 # 98.5 4.9E-07 3.1E-10 55.2 25.4 467 21-587 1-553 (553) 143 protein:vir:107112 Length: 478 98.5 5E-07 3.1E-10 55.1 28.5 415 74-560 1-478 (478) 144 protein:vir:2341 Length: 488 # 98.5 5.9E-07 3.7E-10 54.7 24.7 438 46-578 1-488 (488) 145 protein:vir:79043 Length: 479 98.5 6E-07 3.7E-10 54.7 26.7 395 51-556 1-479 (479) 146 protein:vir:103971 Length: 376 98.4 6.6E-07 4.1E-10 54.5 24.5 356 1-470 1-376 (376) 147 protein:vir:2013 Length: 344 # 98.4 9.2E-07 5.7E-10 53.7 22.5 325 46-466 1-344 (344) 148 protein:vir:96179 Length: 468 98.4 9.8E-07 6.1E-10 53.5 27.7 410 53-546 1-468 (468) 149 protein:vir:100328 Length: 346 98.4 6.3E-07 3.9E-10 54.6 20.4 331 46-468 1-346 (346) 150 protein:vir:733 Length: 453 # 98.3 1.2E-06 7.5E-10 53.0 26.9 402 52-548 1-453 (453) 151 protein:vir:5961 Length: 503 # 98.3 1.2E-06 7.6E-10 53.0 29.2 424 57-579 1-503 (503) 152 protein:vir:79207 Length: 351 98.3 1.3E-06 8E-10 52.9 24.3 331 46-470 1-351 (351) 153 protein:vir:97171 Length: 512 98.3 1.7E-06 1.1E-09 52.2 25.1 446 46-560 1-512 (512) 154 protein:vir:6058 Length: 344 # 98.3 2E-06 1.2E-09 51.9 22.9 324 46-466 1-344 (344) 155 protein:vir:98567 Length: 340 98.3 2E-06 1.2E-09 51.8 23.3 323 46-467 1-340 (340) 156 protein:vir:95113 Length: 474 98.2 2.7E-06 1.7E-09 51.1 30.0 425 51-561 1-474 (474) 157 protein:vir:96839 Length: 474 98.2 2.7E-06 1.7E-09 51.1 27.3 398 74-557 1-474 (474) 158 protein:vir:95899 Length: 474 98.2 2.8E-06 1.7E-09 51.0 26.0 423 46-560 1-474 (474) 159 protein:vir:96266 Length: 474 98.2 2.8E-06 1.7E-09 51.0 26.0 423 46-560 1-474 (474) 160 protein:vir:99781 Length: 511 98.2 3E-06 1.9E-09 50.9 21.6 446 46-560 1-511 (511) 161 protein:vir:106639 Length: 481 98.2 3.1E-06 1.9E-09 50.8 24.1 422 46-561 1-481 (481) 162 protein:vir:3609 Length: 452 # 98.2 3.4E-06 2.1E-09 50.5 24.2 409 59-559 1-452 (452) 163 protein:vir:79703 Length: 505 98.2 3.2E-06 2E-09 50.7 19.9 434 46-536 1-505 (505) 164 protein:vir:4223 Length: 486 # 98.1 3.6E-06 2.3E-09 50.4 21.6 440 60-567 1-486 (486) 165 protein:vir:94805 Length: 492 98.1 4.2E-06 2.6E-09 50.1 28.7 426 62-559 1-492 (492) 166 protein:vir:97336 Length: 492 98.1 4.6E-06 2.9E-09 49.8 28.9 428 1-553 21-492 (492) 167 protein:vir:3780 Length: 345 # 98.1 4.9E-06 3E-09 49.7 22.8 328 46-466 1-345 (345) 168 protein:vir:3743 Length: 345 # 98.1 5.6E-06 3.5E-09 49.4 24.5 329 46-465 1-345 (345) 169 protein:vir:5839 Length: 533 # 98.1 5.7E-06 3.5E-09 49.3 24.0 472 18-604 1-533 (533) 170 protein:vir:267 Length: 348 # 98.0 7E-06 4.3E-09 48.9 24.6 329 37-472 1-348 (348) 171 protein:vir:95542 Length: 548 98.0 7.3E-06 4.5E-09 48.7 24.1 474 31-573 1-548 (548) 172 protein:vir:96366 Length: 511 97.9 9.9E-06 6.2E-09 48.0 21.7 447 46-560 1-511 (511) 173 protein:vir:78805 Length: 511 97.9 9.9E-06 6.2E-09 48.0 21.7 447 46-560 1-511 (511) 174 protein:vir:80680 Length: 441 97.9 1E-05 6.4E-09 47.9 24.3 375 92-541 1-441 (441) 175 protein:vir:5691 Length: 344 # 97.9 1.1E-05 7E-09 47.7 22.2 326 46-468 1-344 (344) 176 protein:vir:9306 Length: 511 # 97.9 1.4E-05 8.6E-09 47.2 25.0 444 46-560 1-511 (511) 177 protein:vir:96240 Length: 511 97.9 1.4E-05 8.6E-09 47.2 24.1 446 46-560 1-511 (511) 178 protein:vir:103951 Length: 511 97.8 1.7E-05 1E-08 46.8 26.0 447 46-560 1-511 (511) 179 protein:vir:3964 Length: 453 # 97.8 1.9E-05 1.2E-08 46.4 26.7 407 52-559 1-453 (453) 180 protein:vir:4698 Length: 251 # 97.8 5.8E-06 3.6E-09 49.3 15.4 239 67-366 1-251 (251) 181 protein:vir:106571 Length: 499 97.8 2E-05 1.2E-08 46.4 28.3 447 63-574 1-499 (499) 182 protein:vir:9922 Length: 489 # 97.8 2.1E-05 1.3E-08 46.3 24.1 409 46-561 1-489 (489) 183 protein:vir:9815 Length: 500 # 97.7 2.8E-05 1.8E-08 45.5 21.0 431 1-536 1-500 (500) 184 protein:vir:3028 Length: 500 # 97.7 2.8E-05 1.8E-08 45.5 21.0 431 1-536 1-500 (500) 185 protein:vir:1587 Length: 508 # 97.6 4.5E-05 2.8E-08 44.4 19.1 421 46-539 1-508 (508) 186 protein:vir:2732 Length: 501 # 97.6 4.5E-05 2.8E-08 44.4 25.0 450 46-563 1-501 (501) 187 protein:vir:4898 Length: 502 # 97.6 4.6E-05 2.9E-08 44.4 27.6 449 1-563 17-502 (502) 188 protein:vir:80959 Length: 499 97.5 4.9E-05 3E-08 44.2 21.9 437 29-553 1-499 (499) 189 protein:vir:96494 Length: 501 97.5 5.2E-05 3.3E-08 44.1 26.5 447 1-563 16-501 (501) 190 protein:vir:98853 Length: 219 97.5 5.3E-05 3.3E-08 44.0 17.9 207 221-468 1-219 (219) 191 protein:vir:78749 Length: 337 97.4 7.5E-05 4.7E-08 43.2 23.6 321 46-464 1-337 (337) 192 protein:vir:105461 Length: 470 97.4 8.5E-05 5.3E-08 42.9 24.0 390 92-553 1-470 (470) 193 protein:vir:38 Length: 496 # N 97.2 0.00013 8.1E-08 41.9 24.4 427 60-553 1-496 (496) 194 protein:vir:78083 Length: 537 97.1 0.00017 1.1E-07 41.2 24.8 441 92-578 1-537 (537) 195 protein:vir:98883 Length: 517 97.0 0.00022 1.3E-07 40.7 19.2 440 75-553 1-517 (517) 196 protein:vir:94546 Length: 506 97.0 0.00024 1.5E-07 40.4 26.5 431 63-560 1-506 (506) 197 protein:vir:7208 Length: 524 # 96.9 0.00027 1.7E-07 40.2 25.1 445 21-530 1-524 (524) 198 protein:vir:103177 Length: 533 96.9 0.00027 1.7E-07 40.1 28.1 458 46-565 1-533 (533) 199 protein:vir:108049 Length: 524 96.9 0.00028 1.7E-07 40.1 24.9 445 27-530 1-524 (524) 200 protein:vir:103458 Length: 524 96.9 0.0003 1.8E-07 39.9 25.1 445 21-530 1-524 (524) 201 protein:vir:106999 Length: 564 96.8 0.00035 2.2E-07 39.5 23.8 467 46-573 1-564 (564) 202 protein:vir:81017 Length: 521 96.7 0.00043 2.7E-07 39.0 24.2 441 29-530 1-521 (521) 203 protein:vir:6596 Length: 521 # 96.6 0.00044 2.7E-07 39.0 24.3 448 29-530 1-521 (521) 204 protein:vir:108215 Length: 469 96.6 0.00046 2.9E-07 38.9 29.9 430 34-584 1-469 (469) 205 protein:vir:5665 Length: 511 # 96.5 0.00058 3.6E-07 38.3 23.2 433 39-530 1-511 (511) 206 protein:vir:101806 Length: 516 96.4 0.00071 4.4E-07 37.8 23.4 440 27-530 1-516 (516) 207 protein:vir:101189 Length: 516 96.4 0.00071 4.4E-07 37.8 23.4 440 27-530 1-516 (516) 208 protein:vir:101418 Length: 569 96.0 0.0012 7.2E-07 36.7 20.7 501 21-569 1-569 (569) 209 protein:vir:107880 Length: 491 95.9 0.0014 8.4E-07 36.3 32.2 442 46-565 1-491 (491) 210 protein:vir:98265 Length: 524 95.8 0.0015 9.3E-07 36.1 26.0 449 25-530 1-524 (524) 211 protein:vir:78907 Length: 518 95.5 0.0019 1.2E-06 35.5 24.3 433 67-548 1-518 (518) 212 protein:vir:100598 Length: 516 95.3 0.0023 1.4E-06 35.1 22.7 441 27-530 1-516 (516) 213 protein:vir:104500 Length: 537 95.1 0.0027 1.7E-06 34.7 26.5 457 29-588 1-537 (537) 214 protein:vir:104892 Length: 558 95.0 0.003 1.8E-06 34.4 23.5 463 46-590 1-558 (558) 215 protein:vir:4782 Length: 522 # 94.7 0.0038 2.3E-06 33.9 22.1 442 52-561 1-522 (522) 216 protein:vir:106282 Length: 521 94.6 0.004 2.5E-06 33.7 26.2 432 37-530 1-521 (521) 217 protein:vir:6896 Length: 523 # 93.7 0.0066 4.1E-06 32.5 24.6 444 21-530 1-523 (523) 218 protein:vir:101494 Length: 527 93.2 0.0083 5.1E-06 32.0 27.7 443 52-554 1-527 (527) 219 protein:vir:102239 Length: 527 93.2 0.0086 5.3E-06 31.9 27.7 443 52-554 1-527 (527) 220 protein:vir:79063 Length: 491 88.8 0.03 1.9E-05 28.9 31.8 439 46-565 1-491 (491) 221 protein:vir:79511 Length: 448 80.3 0.096 6E-05 26.2 30.0 421 46-561 1-448 (448) 222 protein:vir:78161 Length: 355 78.3 0.12 7.2E-05 25.7 25.2 327 201-586 1-355 (355) 223 protein:vir:98816 Length: 446 71.9 0.19 0.00012 24.5 29.6 399 52-511 1-446 (446) 224 protein:vir:103860 Length: 528 62.1 0.34 0.00021 23.1 30.5 459 46-586 1-528 (528) 225 protein:vir:95254 Length: 488 47.8 0.69 0.00043 21.5 26.4 445 46-587 1-488 (488) 226 protein:vir:77981 Length: 448 45.2 0.78 0.00048 21.2 31.6 425 46-562 1-448 (448) 227 protein:vir:7430 Length: 563 # 37.6 1.1 0.00069 20.3 26.4 434 46-584 1-563 (563) 228 protein:vir:79233 Length: 526 30.8 1.5 0.00096 19.5 28.2 457 30-571 1-526 (526) 229 protein:vir:4073 Length: 279 # 28.4 1.7 0.0011 19.3 8.2 247 214-487 1-279 (279) No 1 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=100.00 E-value=8.2e-217 Score=1205.23 Aligned_cols=695 Identities=100% Similarity=1.465 Sum_probs=638.3 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) ||+++.|||++++|+++++|++|+..||+..+|+++..++|+|+.|.||+..++.+++|++.|.||++..++|+++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) T protein:vir:78 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (695) T ss_pred CCccchhhhhhhhhcCCCcchhhhhhhhhhhhhhhhccccccchhhcccccccccccccccCCCcccccceeceeccccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccc Q lcl|Aclame:pro 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG 160 (695) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~ 160 (695) +|++.++.+|+|++++..++.++||+++||+|||+||+++|+|+||++|++++++|||+|+++++...+++.+.|+++.+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~ 160 (695) T protein:vir:78 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG 160 (695) T ss_pred CccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhc Q lcl|Aclame:pro 161 NAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWV 240 (695) Q Consensus 161 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i 240 (695) +..+++++|++++|+++++||+||++|+++++|+|||||++++|+|++|+..+++||.+++.+|++|+||+|+|+||||+ T Consensus 161 ~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~v 240 (695) T protein:vir:78 161 NAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWV 240 (695) T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccccccCcceeeeEeeccccc Confidence 99999999999999999999999999999999999999999999999998889999988999999999999999999999 Q ss_pred cccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH Q lcl|Aclame:pro 241 TPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) Q Consensus 241 ~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~ 320 (695) +|..++..||++|+||+|++|+|.|++||+||+++|.++++|+++|+.|+|||+|++|++|++|.+|++++.++++|+++ T Consensus 241 tP~~~n~~dP~spdfgkP~~y~V~G~kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~ 320 (695) T protein:vir:78 241 TPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) T ss_pred ccchhhhccchhhccCCCceEEEeceEEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHh Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKL 400 (695) Q Consensus 321 ~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L 400 (695) +++.++|+++++.|+++++.++.+|+++++++|||+|+++||+++|+|++++++||||++++++|+++|||+++||+||| T Consensus 321 ~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~stslSGLddVi~qf~q~VAgaa~IPltkL 400 (695) T protein:vir:78 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKL 400 (695) T ss_pred hhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecCCcceEEEecccCCHHHHHHHHHHHHHhhhcCchhhh Confidence 99999999999999998888999999999999999999999988899999999999999999999999999999999999 Q ss_pred eccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhh Q lcl|Aclame:pro 401 LGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSD 480 (695) Q Consensus 401 ~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~ 480 (695) |||||+|||||||+|++||||+|+++||+.|+|.|++++++|++|.||.++++|+|+|+|||+||++|+|+|++++|+++ T Consensus 401 fGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d 480 (695) T protein:vir:78 401 LGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSD 480 (695) T ss_pred hccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhh Q lcl|Aclame:pro 481 VLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 481 ~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (695) ++|++.|+|++.+++.+|..++.++|....+.......................+....................+..+. T Consensus 481 ~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 560 (695) T protein:vir:78 481 VLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) T ss_pred HHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCCCCCCCCCCCceeeee Confidence 99999999999999999999999999765554444332222222211111111111111111112222222223333333 Q ss_pred hccccccccccCceEEEEEEEEEcCCeEEEEEeCCCceeCCcceeCCCCCHHHHHHHHHHHhcCceEeEEEEecCcccEE Q lcl|Aclame:pro 561 ANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHDGELVPLGKFDGF 640 (695) Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~lPGG~vE~gEs~~~aa~REv~EEtGl~v~~~~~~~~~~~~~ 640 (695) ...........++.+.++++|+..+|+|||+||+.|.|+||||+||.|||+++||+||++|||||++....++.+.++.+ T Consensus 561 ~~~~~~~ag~~~~~~~aag~v~~~~g~vLl~kr~~g~W~lPgG~vE~gEt~~~aa~RE~~EEtGl~~~~el~~~g~~~~~ 640 (695) T protein:vir:78 561 ANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHDGELVPLGKFDGF 640 (695) T ss_pred ccccccccCCCCcccceeEEEEEeCCEEEEEEecCCCccCCccccCCCCCHHHHHHHHHHHHhCCccccceeeeeeecce Confidence 33333344456667777888888899999999999999999999999999999999999999999988777888889999 Q ss_pred EEEEEEEeeCCccccCchhhhhccCCHHHHhhhcCcchHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 641 FHAFVAHLEPFDVELNDEHTAFDWFNPDELPHPLHRDTAAIVDAACKALDRLERA 695 (695) Q Consensus 641 ~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~l~~~~~~~i~~~~~~l~~~~~~ 695 (695) +|+|+|.+.++++++++||.+++||++++||++|++++..+|+++.+.|+|++|| T Consensus 641 ~~~f~~~~e~~~~~l~dEh~~~~Wf~pdeLP~pL~~~~aavl~aA~k~ld~~~~~ 695 (695) T protein:vir:78 641 FHAFVAHLEPFDVELNDEHTAFDWFNPDELPHPLHRDTAAIVDAACKALDRLERA 695 (695) T ss_pred EEEEEEeecccCcccCchhhhcccCChhhcCcccchHHHHHHHHHHHHHHhhcCC Confidence 9999999998899999999999999999999999999999999999999999999 No 2 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=100.00 E-value=8.3e-215 Score=1194.24 Aligned_cols=695 Identities=94% Similarity=1.383 Sum_probs=633.8 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) ||+++.|||++++|+++++|++|+..||+..+|+++..++|+|+.|.||+..++.+++|++.|.||++..++|+++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (698) T protein:vir:10 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (698) T ss_pred CCccchhhhhhhhhcCCCcchhhhhhhhhhhhhhhhccccccchhhcccccccccccccccCCCccccccccceeccccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccc Q lcl|Aclame:pro 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG 160 (695) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~ 160 (695) +|++.++.+|+|+++...++.++||+++||+|||+||+++|+|+||++|++++++|||+|+++++...+++.+.|+++.+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~ 160 (698) T protein:vir:10 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG 160 (698) T ss_pred CccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhc Q lcl|Aclame:pro 161 NAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWV 240 (695) Q Consensus 161 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i 240 (695) +..+++++|++++|+++++||+||++|+++++|+|||||++++|+|++|+..+++||.+++.+|++|+||+|+|+||||+ T Consensus 161 ~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~v 240 (698) T protein:vir:10 161 NAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWV 240 (698) T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceEEEEEeecCccccccccccccccccCccceeeeeeccccc Confidence 99999999999999999999999999999999999999999999999998889999988999999999999999999999 Q ss_pred cccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH Q lcl|Aclame:pro 241 TPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) Q Consensus 241 ~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~ 320 (695) +|..++..||++|+||+|++|+|.|++||+||+++|.++++|+++|+.|+|||+|++|++|++|.+|++++.++++|+++ T Consensus 241 tP~~~n~~dP~spdfgkP~~y~V~G~~IH~SRL~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~ 320 (698) T protein:vir:10 241 TPNNYNSINPVADDFYKPSTWWMIGSEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (698) T ss_pred ccchhhhccchhhccCCCceEEEecceecceeEEEecCCCchhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHHHHH Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKL 400 (695) Q Consensus 321 ~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L 400 (695) +++.++++++++.|++++..++.+|+++++++|||+|+++||+++|+|++++++||||++++++|+|+|||+++||+||| T Consensus 321 ~~~~~l~~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~st~lSGLddVi~qf~q~VAgaa~IPltkL 400 (698) T protein:vir:10 321 FSVSGILMDLAQALTPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKL 400 (698) T ss_pred hhHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCccceEEEecCCcceEEEecCcCCHHHHHHHHHHHHHhhhcCchhhh Confidence 99999999999999998888999999999999999999999988899999999999999999999999999999999999 Q ss_pred eccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhh Q lcl|Aclame:pro 401 LGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSD 480 (695) Q Consensus 401 ~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~ 480 (695) |||||+|||||||+|++||||+|+++||+.|+|+|++++++|++|+||.+|++|+|+|+|||+||++|+|+|++++|+++ T Consensus 401 fGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i~~~fnPL~qmtd~EkAeI~~k~A~~d 480 (698) T protein:vir:10 401 LGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAEARYKQAQSD 480 (698) T ss_pred hccCCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---hhhhhhhcccccccccCCCccchhhhh Q lcl|Aclame:pro 481 VLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTY---VQRLAEGGDTGAPGGARAGATAPPTVA 557 (695) Q Consensus 481 ~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (695) ++|+..|+|++++++.+|..++.++|....+................... ....+...................... T Consensus 481 ~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (698) T protein:vir:10 481 VLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGVLTYVQRMAEGGDTGAPTAPGGARAGATAPPAAA 560 (698) T ss_pred HHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHHHhhhcCCcCCCCcccccccccccCCCCCCcccc Confidence 99999999999999999999999999765443333222222222111111 111111111111112222222222233 Q ss_pred hhhhccccccccccCceEEEEEEEEEcCCeEEEEEeCCCceeCCcceeCCCCCHHHHHHHHHHHhcCceEeEEEEecCcc Q lcl|Aclame:pro 558 NVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHDGELVPLGKF 637 (695) Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~lPGG~vE~gEs~~~aa~REv~EEtGl~v~~~~~~~~~~ 637 (695) .+...............+.+++||++.+++|||++|..|.|+||||+||+|||+++||+||++||||+.......+.+.+ T Consensus 561 ~~~~~~~~~~~~~~~~~~~a~giv~~~g~~vLL~~r~~g~W~lPgG~ie~GEt~~~aa~RE~~EEtG~~~~~~l~~~g~~ 640 (698) T protein:vir:10 561 NVNANANPREAGAQDAAMRAAGIVFRAGDKVLLMKRPAGDWGLPAGKVEDGETPEEAARRETLEETGHAGDYVLAPLGKY 640 (698) T ss_pred cccCCCCccccCcccceeeEEEEEEEcCCeEEEEEecCCCcccCccccCCCCCHHHHHHHHHHhhcccccchhhhccccc Confidence 33333344444555666788888899999999999999999999999999999999999999999998765444456777 Q ss_pred cEEEEEEEEEeeCCccccCchhhhhccCCHHHHhhhcCcchHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 638 DGFFHAFVAHLEPFDVELNDEHTAFDWFNPDELPHPLHRDTAAIVDAACKALDRLERA 695 (695) Q Consensus 638 ~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~l~~~~~~~i~~~~~~l~~~~~~ 695 (695) +.++|+|+|++.++++.+++||.+++||++++||++|......+|++++++|++++|| T Consensus 641 de~~~~f~ad~~p~~~~l~dEh~~~~WfdpdeLP~pL~~~~~~ii~~A~kald~~~~~ 698 (698) T protein:vir:10 641 DEFFHAFVADVNPFDVELNDEHTAFDWFDPDELPHPLHRDTAAIVDAACKALDRLERA 698 (698) T ss_pred ceEEEEEEEEecCcceeeccccccccccChHhcccccCHHHHHHHHHHHHHHhhhcCC Confidence 7888999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=100.00 E-value=4.4e-214 Score=1190.26 Aligned_cols=695 Identities=99% Similarity=1.453 Sum_probs=638.1 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) ||+++.|||.+++.+++++|++|+.-||+..+|+++..++|+|+...||+..++.+++|+-.|.||++..++|+++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) T protein:vir:36 1 MSRRNAKKRAQLARTGRRPEVAKAATLAAAATIATAAAAQPVPADFARRGALNALDAAPVVEPSPSLRLARQFEVDVSNY 80 (695) T ss_pred CCccchhhHHHHhhcCCCcchhhhhhhhhhhhhhhhccccccchhhhhcccccccccccccCCCcccccceeceeccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccc Q lcl|Aclame:pro 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG 160 (695) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~ 160 (695) +|++.++.+|+|++++..++.++||+++||+|||+||+++|+|+||++|++++++|||+|+++++...+++.+.|+++.+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~ 160 (695) T protein:vir:36 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG 160 (695) T ss_pred CccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcccceecccchhhhhhccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhc Q lcl|Aclame:pro 161 NAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWV 240 (695) Q Consensus 161 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i 240 (695) +..+++++|++++|+++++||+||++|+++++|+|||||++++|+|++|+..+++||.+++.+|++|+||+|+|+||||+ T Consensus 161 ~~~~~~d~dqik~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~v 240 (695) T protein:vir:36 161 NAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWV 240 (695) T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccccccCcceeeeEeeccccc Confidence 99999999999999999999999999999999999999999999999998889999988999999999999999999999 Q ss_pred cccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH Q lcl|Aclame:pro 241 TPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) Q Consensus 241 ~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~ 320 (695) +|..++..||++|+||+|++|+|.|++||+||+++|.++++|+++|+.|+|||+|++|++|++|.+|++++.++++|+++ T Consensus 241 tP~~~n~~dP~spdfgkP~~y~V~G~kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~ 320 (695) T protein:vir:36 241 TPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) T ss_pred ccchhhhccchhhccCCCceEEEeceEEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHh Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKL 400 (695) Q Consensus 321 ~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L 400 (695) +++.++|+++++.|+++++.++.+|+++++++|||+|+++||+++|+|++++++||||++++++|+++|||+++||+||| T Consensus 321 ~~v~~lk~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~stslSGLddVi~qf~q~VAgaa~IPltkL 400 (695) T protein:vir:36 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKL 400 (695) T ss_pred hhHHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecCCcceEEEecccCCHHHHHHHHHHHHHhhhcCchhhh Confidence 99999999999999998888999999999999999999999988899999999999999999999999999999999999 Q ss_pred eccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhh Q lcl|Aclame:pro 401 LGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSD 480 (695) Q Consensus 401 ~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~ 480 (695) |||||+|||||||+|++||||+|+++||+.|+|.|++++++|++|.||.++++|+|+|+|||+||++|+|+|++++++++ T Consensus 401 fGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idpdi~~~fnPL~qmtd~EkAeI~~k~A~~d 480 (695) T protein:vir:36 401 LGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSD 480 (695) T ss_pred hccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhh Q lcl|Aclame:pro 481 VLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 481 ~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (695) ++|++.|+|++.+++.+|..++.++|....+.......................+....................+..+. T Consensus 481 ~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~ 560 (695) T protein:vir:36 481 VLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) T ss_pred HHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCcccccccCCCcccccc Confidence 99999999999999999999999999765554444322222222211111111111111111111222222223333333 Q ss_pred hccccccccccCceEEEEEEEEEcCCeEEEEEeCCCceeCCcceeCCCCCHHHHHHHHHHHhcCceEeEEEEecCcccEE Q lcl|Aclame:pro 561 ANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHDGELVPLGKFDGF 640 (695) Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~lPGG~vE~gEs~~~aa~REv~EEtGl~v~~~~~~~~~~~~~ 640 (695) ...........++.+.++++|+..+|+|||+||+.|.|+||||+||.|||+++||+||++|||||++....++.+.++.+ T Consensus 561 ~~~~~~~ag~~~~~~~aag~v~~~~g~vLl~kr~~g~W~lPgG~vE~gEt~~~aa~RE~~EEtGl~~~~el~~~g~~~~~ 640 (695) T protein:vir:36 561 ANVNPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHDGELVPLGKFDGF 640 (695) T ss_pred cccCccccCCCCccceeeEEEEEeCCEEEEEEecCCCccCCccccCCCCCHHHHHHHHHHHHhCCccccceeeeeeecce Confidence 33333344556666778888888899999999999999999999999999999999999999999988777888889999 Q ss_pred EEEEEEEeeCCccccCchhhhhccCCHHHHhhhcCcchHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 641 FHAFVAHLEPFDVELNDEHTAFDWFNPDELPHPLHRDTAAIVDAACKALDRLERA 695 (695) Q Consensus 641 ~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~l~~~~~~~i~~~~~~l~~~~~~ 695 (695) +|+|+|.+.++++++++||.+++||++++||++|++++..+|+++.++|+|++|| T Consensus 641 ~~~f~~~~e~~~~~l~dEh~~~~Wf~pdeLP~pL~~~~a~vl~aa~k~l~~~~~~ 695 (695) T protein:vir:36 641 FHAFVAHLEPFDVELNDEHTAFDWFNPDELPHPLHRDTAAIVDAACKALDRLERA 695 (695) T ss_pred EEEEEEeecccCcccCchhhhcccCChhhcCccccHHHHHHHHHHHHHHHhhccC Confidence 9999999998899999999999999999999999999999999999999999999 No 4 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=100.00 E-value=1.1e-211 Score=1177.04 Aligned_cols=694 Identities=99% Similarity=1.458 Sum_probs=635.1 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) ||+++.|||++++.+++++|++|+..|+..+.|++| .++|.|+.-.|+++.+..+++|+.+|.||++..++|+++.+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (694) T protein:vir:10 1 MSRRNAKKRTQLARTGRRPEVAKAAALAAAATIATA-AAQPVPADFARRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 79 (694) T ss_pred CCccchhhHHHHhhcCCCcchhhhhhhhhhhhhhhc-CCCcccCCccccccchhhcccccCCCCcchhhhhhccccccCC Confidence 999999999999999999999999999999999986 7889999999999999999999999999999999999999999 Q ss_pred cccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccc Q lcl|Aclame:pro 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG 160 (695) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~ 160 (695) +|++.++.+|+++++...++.++||+++||+|||+||+++|+|+||++|+++|++|||+|+++++...+++.+.|+++.+ T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~ 159 (694) T protein:vir:10 80 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG 159 (694) T ss_pred CccccchhhhhhccCcccccchhhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhc Q lcl|Aclame:pro 161 NAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWV 240 (695) Q Consensus 161 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i 240 (695) +..+++++|++++|+++++||+||++|+++++|+|||||++++|+|++|+..+++||.+++.+|++|+||+|+|+||||+ T Consensus 160 ~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~v 239 (694) T protein:vir:10 160 NAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWV 239 (694) T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeecCccccccccccccccccCcceeeeEeeccccc Confidence 99999999999999999999999999999999999999999999999998889999988999999999999999999999 Q ss_pred cccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH Q lcl|Aclame:pro 241 TPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) Q Consensus 241 ~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~ 320 (695) +|..++..||++|+||+|++|+|.|++||+||+++|.++++|+++|+.|+|||+|++|++|++|.+|++++.++++|+++ T Consensus 240 tP~~~n~~dP~spdfgkP~~y~V~G~~IH~SRL~~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~ 319 (694) T protein:vir:10 240 TPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 319 (694) T ss_pred ccchhhhccchhhccCCCceEEEeceEEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHh Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKL 400 (695) Q Consensus 321 ~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L 400 (695) +++.++|+++++.|+++++.++.+|+++++++|||+|+++||+++|+|++++++||||++++++|+++|||+++||+||| T Consensus 320 ~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~stslSGLddVi~qf~q~VAgaa~IPltkL 399 (694) T protein:vir:10 320 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKL 399 (694) T ss_pred hhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecCCcceEEEecccCCHHHHHHHHHHHHHhhhcCchhhh Confidence 99999999999999998888999999999999999999999987899999999999999999999999999999999999 Q ss_pred eccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhh Q lcl|Aclame:pro 401 LGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSD 480 (695) Q Consensus 401 ~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~ 480 (695) |||||+|||||||+|++||||+|+++||+.|+|.|++++++|++|.||.++++|+|+|+|||+||++|+|+|++++|+++ T Consensus 400 fGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i~~~fnPL~qmtd~EkAeI~~k~A~~d 479 (694) T protein:vir:10 400 LGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSD 479 (694) T ss_pred hccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCcCHHHHHHHHhhhhHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhh Q lcl|Aclame:pro 481 VLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 481 ~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (695) ++|++.|+|++.+++.+|..+..++|....+.......................+.......................+. T Consensus 480 ~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~ 559 (694) T protein:vir:10 480 VLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 559 (694) T ss_pred HHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCcccccccCCCCcccccccCCCcccccc Confidence 99999999999999999999999999765554444322222222211111111111111111111222222222333333 Q ss_pred hccccccccccCceEEEEEEEEEcCCeEEEEEeCCCceeCCcceeCCCCCHHHHHHHHHHHhcCceEeEEEEecCcccEE Q lcl|Aclame:pro 561 ANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHDGELVPLGKFDGF 640 (695) Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~lPGG~vE~gEs~~~aa~REv~EEtGl~v~~~~~~~~~~~~~ 640 (695) ...........++.+.++++|+..+|+|||+||+.|.|+||||+||.|||+++||+||++|||||++....++.+.++.+ T Consensus 560 ~~~~~~~ag~~~~~~~~ag~v~~~~g~vLl~kr~~g~W~lPgG~vE~gEt~~~a~~RE~~EEtGl~~~~el~~~~~~~~~ 639 (694) T protein:vir:10 560 ANVNPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRETREETGYDHDGELVPLGKFDGF 639 (694) T ss_pred cccCccccCCCCccceeeEEEEEeCCEEEEEEecCCCccCCccccCCCCCHHHHHHHHHHHHhCCccccceeeeeeecce Confidence 33333344556666778888888899999999999999999999999999999999999999999988777888888999 Q ss_pred EEEEEEEeeCCccccCchhhhhccCCHHHHhhhcCcchHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 641 FHAFVAHLEPFDVELNDEHTAFDWFNPDELPHPLHRDTAAIVDAACKALDRLERA 695 (695) Q Consensus 641 ~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~l~~~~~~~i~~~~~~l~~~~~~ 695 (695) +|+|+|.+.++++.+++||.+++||++++||++|+..+..+|+++.++|+|++|| T Consensus 640 ~h~f~~~~e~~~v~l~dEh~~~~Wf~pdeLP~pL~~~ta~~L~aa~k~l~~~~~~ 694 (694) T protein:vir:10 640 FHAFVAHLEPFDVELNDEHTAFDWFNPDELPHPLHRDTAAIVDAACKALDRLERA 694 (694) T ss_pred EEEEEEeecccCcccCchhhhcccCChhhcCccccHHHHHHHHHHHHHHHhhccC Confidence 9999999999899999999999999999999999999999999999999999999 No 5 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=100.00 E-value=6.8e-128 Score=717.75 Aligned_cols=521 Identities=45% Similarity=0.739 Sum_probs=400.3 Q ss_pred hcCCCCcccchhhccccc-ccccccccccchhhhhhhcccccCCCCcccccc--ccccc----ccccccchhhhhhhccC Q lcl|Aclame:pro 36 ATAAQPVPADMGRRGALN-ALDAAPVAEPSPSLRLARQFEVDVSNYTPRERR--AASYA----LDFNGTSMDALSFVTSS 108 (695) Q Consensus 36 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~ 108 (695) -..|.|.|+|.....+.. +.......+...+...+.++++.+++..|-... .+.++ +...........|+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~ 80 (532) T protein:vir:94 1 MADTDPTPRPEITYATLQQAQRVDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEAT 80 (532) T ss_pred CCCCCCCCCcceehhhhhhHhhhhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCccccccccccccccc Confidence 233455555433322211 111111112222233344444444443332211 11122 21111222344678888 Q ss_pred CCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHH Q lcl|Aclame:pro 109 GFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVR 188 (695) Q Consensus 109 ~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 188 (695) +|+||++|++|++||++|++||+||+||||+|++|+... +.+.+++.+++|++++++|++|++|+ T Consensus 81 ~~~~~~l~a~Y~~~~l~r~~Vd~~aed~~r~~~~i~~~~---------------~~~~~~~~~~~i~~~~~~l~v~~~l~ 145 (532) T protein:vir:94 81 SWPGFPTLALLAQLPEYRTMHETPADECVRAWGKITCSS---------------KDELAADKATRITQKLEQYNVRTLVR 145 (532) T ss_pred ccchHHHHHHHHcCchhhhhhccchHHHhhCCceEeeCC---------------ccccchHHHHHHHHHHHhhhHHHHHH Confidence 999999999999999999999999999999999996432 23456788999999999999999999 Q ss_pred HHHHhcCccceEEEEEEEcCCCc--hhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc-c Q lcl|Aclame:pro 189 TTVIHDQAFGRAHPYFKIKGDDQ--IMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI-G 265 (695) Q Consensus 189 ~a~~~~Rl~G~~~i~i~~~~d~~--~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~-~ 265 (695) ++++|+|||||++++|++++++. .+++|+++++.+|++|+|++|+|+||+||+|..++..||+||+||+|++|+|. | T Consensus 146 ~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~~g 225 (532) T protein:vir:94 146 TVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIATSG 225 (532) T ss_pred HHHHhhhcccceEEEEEeccCCccccccccccccccccccceeeEEEeechheecccccccccccccccCCceeEEEccC Confidence 99999999999999999987653 47899999999999999999999999999999998889999999999999985 7 Q ss_pred eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHH Q lcl|Aclame:pro 266 TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMR 345 (695) Q Consensus 266 ~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r 345 (695) ++||+||||||.|+++|++++++|+|||+|++|++|++|++|+++++++++|++++++.|+|+++.+.++.++...+.+| T Consensus 226 ~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~a~~ls~~~~~~~~~r 305 (532) T protein:vir:94 226 KKIHSSRIHTVVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFSMTNLATDMAQLLAPGGAQSLDAR 305 (532) T ss_pred eeeccceEEEecCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechHHhhcchhHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888999999 Q ss_pred HHHHHHhcCCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHH Q lcl|Aclame:pro 346 AELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRA 425 (695) Q Consensus 346 ~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~ 425 (695) +++++++++|+|++++|+++|+|++++++||||++++++++++|||+++||+|||||+||+|||||||+|++||||+|++ T Consensus 306 ~~~~~~~~~n~g~~~id~~~e~~e~~~~~lsgl~~~l~~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s 385 (532) T protein:vir:94 306 LQLFNLYRDNRNIGALDKGTEEIQQTNTPLSGLDSLQAQSQEQMAAVSHIPLVKLLGITPNGLNASSDGEIRVWYDFIAG 385 (532) T ss_pred HHHHHhhcCCccceEEcCCCceeEEEecccCCHHHHHHHHHHHHHhHhCCCeeeeecCCcccccccchHHHHHHHHHHHH Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhh Q lcl|Aclame:pro 426 YQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGP 505 (695) Q Consensus 426 ~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~ 505 (695) +||+.++|.|++|+++|+++++|.++++|+|+|+|||++|++|+|+++++++++++++++.|+++++++++.+...+.++ T Consensus 386 ~Qe~~l~p~le~l~~~l~~s~~g~~~~d~~~~f~pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~ 465 (532) T protein:vir:94 386 YQATNLTPLMEWIIDLIQLSEYGQIDPGLAWEWSPLMELDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSG 465 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhh-hhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEc Q lcl|Aclame:pro 506 YAGKLDANDDPGVPADDDIDGVLTY-VQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVV 584 (695) Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 584 (695) +........................ ........... ............ .............| +.. T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~-~~~~~~~~~~~~~~-~~~------- 531 (532) T protein:vir:94 466 YAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPN-----PQPDSEDDQTDN-QPDAQADPAQNDQP-VGN------- 531 (532) T ss_pred cccccccccccccccchhhhhcccccCCCCCCCCCCC-----CCCCCCCCCCCC-ccCCCccccccCCC-cCC------- Confidence 7655433222111111100000000 00000000000 000000000000 00000000000000 000 Q ss_pred CCe Q lcl|Aclame:pro 585 DGK 587 (695) Q Consensus 585 ~~~ 587 (695) + T Consensus 532 --~ 532 (532) T protein:vir:94 532 --R 532 (532) T ss_pred --C Confidence 0 No 6 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=100.00 E-value=4.2e-125 Score=702.43 Aligned_cols=527 Identities=19% Similarity=0.230 Sum_probs=392.6 Q ss_pred CcchhhhhhhhhchhccccccCh-------hhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcc Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAK-------AAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQF 73 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (695) |-+|+|||.-.-.....+++..+ ++..+.+..- +...+.+.+.. .|...-++++++..+- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 67 (537) T protein:vir:10 1 MFKFWRKKTVEAVQSSIAERIEPRVGIFGAGDDEKPFTRA------------QLVHQTMMAIR-DHAIAMMPKVDGSHPD 67 (537) T ss_pred CCCccccccccccccccccccccccCCCcccchhhHHHHH------------HhhhhccCCCC-CccCcccccccccccc Confidence 88888776533222211222111 1111111111 11111111111 1111122333433332 Q ss_pred cccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhc Q lcl|Aclame:pro 74 EVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADT 153 (695) Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~ 153 (695) .+..+. .......+.+ ..+.++.....||+.++|+||++|++|++||++|+|||+||+||||+|++|... T Consensus 68 ~a~d~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~iVd~~A~d~~r~~~~i~~~------- 137 (537) T protein:vir:10 68 MAMDGL-DVEGGTFSAY--ANPNLSEGLVLWYAQQAFIGHQMCALIATHWLVNKACSQMPRDAMRKGYKIISD------- 137 (537) T ss_pred hhcccc-ccchhhhhhh--ccccccchhhhhccccCCccHHHHHHHHhCchhhhhhhhhhHHhhcCCceeecC------- Confidence 222221 1111111111 123344445579999999999999999999999999999999999999998643 Q ss_pred cCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcC-CCchhccccCCccccccCcceEEE Q lcl|Aclame:pro 154 SGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKG-DDQIMDTPLVPRPYTVPKGSFQGL 232 (695) Q Consensus 154 ~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~-d~~~~~~Pl~~~~~~i~~g~l~~l 232 (695) ..++.+++.+++|++++++|++|++|+++++|+|||||++++|++++ |+..+++|| ++++|++|+|++| T Consensus 138 --------~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl--~~~~i~kg~~k~l 207 (537) T protein:vir:10 138 --------DGNELDPKDAKFIDRYDRAFNIKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPF--NIDGVMPGAYKGI 207 (537) T ss_pred --------CcccccHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEeecCcCCccccccc--ccccccccceeEE Confidence 23345778899999999999999999999999999999999999975 456799999 5568999999999 Q ss_pred EEecchhccccc--eecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 233 RVVEPYWVTPNN--YNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRT 310 (695) Q Consensus 233 ~v~d~~~i~p~~--~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~ 310 (695) +|+||+|++|.. ++..||+||+||+|++|+|+|++||+||||+|.|+++|++++++|+|||+|++|++|++|++|+++ T Consensus 208 ~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~v~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t 287 (537) T protein:vir:10 208 VQIDPYWCAPLLDAQASSNPVSMHFYEPTYWLINGKKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAAERT 287 (537) T ss_pred EEechhhcccccchhhhccCCccccCCceeeeecCeEecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHHHHH Confidence 999999999954 556799999999999999999999999999999999999999999999999999999999999999 Q ss_pred hHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHH Q lcl|Aclame:pro 311 RQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMS 390 (695) Q Consensus 311 ~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~ia 390 (695) ++++++|++++++.|+|+++++.++++ +.+.+|+++++++++|+|++++|+++|+|++++++||||++++++++++|| T Consensus 288 ~~~~~~l~~~~~~~v~k~~~~~~l~~~--~~~~~r~~~~~~~r~n~g~~~id~e~e~~e~~~~~lsgl~~~l~~~~~~iA 365 (537) T protein:vir:10 288 ANEGPMLAMTKRQTVLKVDAAQVLANK--QQFDETMSWWTATRDNYQVRVVDKDNEDVVQIDTTLNDLDKVIMNQYQLVC 365 (537) T ss_pred HHHHHHHHHhcCCceeeechHHhhcCH--HHHHHHHHHHHhhcCCcceeEecCCCceeEEEeccCCCHHHHHHHHHHHHH Confidence 999999999999999999999988764 568999999999999999999998779999999999999999999999999 Q ss_pred hhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHH Q lcl|Aclame:pro 391 AVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVA 470 (695) Q Consensus 391 aas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~A 470 (695) ++++||+|||||+||+|||||||+|++||||+|+++|| .|+|.|++++++|+++++|. +.+|+|+|+||+++|++|+| T Consensus 366 a~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe-~l~p~l~~l~~ll~~~~~~~-~~~~~i~f~pL~~~s~kEkA 443 (537) T protein:vir:10 366 AIARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQD-DMRPLIDRHHQLVCRSHLRK-RIRVKVEFPPMDAPKESERA 443 (537) T ss_pred hhhCCCceeeccCCccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-CcceEEEeCCCCCCCHHHHH Confidence 99999999999999999999999999999999999999 59999999999999999986 66899999999999999999 Q ss_pred HHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCc Q lcl|Aclame:pro 471 ESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGA 550 (695) Q Consensus 471 ei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (695) +++++++++++++++.|+++++++++.|...+..++.........+............ ............ ..... T Consensus 444 ei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~---~~~~~~~~~~~~--~~~~~ 518 (537) T protein:vir:10 444 DTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGK---PVRIIEDQPAPS--EMFGA 518 (537) T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhhcccCCccCC---cCCCCCCCCCcc--ccCCC Confidence 9999999999999999999999999999998777666543221111111110000000 000000000000 00000 Q ss_pred cchhhhhhhhhccccccccccCceEEEEEEEEEc Q lcl|Aclame:pro 551 TAPPTVANVNANVKPREAGAQDAAMRAAGAVYVV 584 (695) Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 584 (695) ........ . ....++...+ T Consensus 519 ~~~~~~~~----~-----------~~~~~a~~~~ 537 (537) T protein:vir:10 519 TSSGESAN----D-----------PRDSGAAFED 537 (537) T ss_pred CccccccC----C-----------CccCccccCC Confidence 00000000 0 0000000000 No 7 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=100.00 E-value=1.3e-122 Score=688.72 Aligned_cols=633 Identities=21% Similarity=0.305 Sum_probs=414.7 Q ss_pred Ccchhh----hhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcc-cchhhcccccccccccccccchhhhhhhcccc Q lcl|Aclame:pro 1 MSRRNA----KKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVP-ADMGRRGALNALDAAPVAEPSPSLRLARQFEV 75 (695) Q Consensus 1 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (695) |-|-.| ||-. .+-.+.++ +|-+ + -.++.| .+|+|.++.......+...| .......|+. T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 64 (765) T protein:vir:96 1 MFKLSWIFGRKKDN-AACSESAP--EKVA---------R--IPQHDPLDPMIKLGKIRGWNVEPEKAP--VIRSVKDFLE 64 (765) T ss_pred Cceeeeeccccccc-ccccccCc--hhhh---------h--cCCCCCcccchhHHHHhhcccccccCC--CCCCCCcccC Confidence 544333 3211 11111110 0101 1 012222 22445443322211111111 1111111221 Q ss_pred cC----------CCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeec Q lcl|Aclame:pro 76 DV----------SNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIG 145 (695) Q Consensus 76 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~ 145 (695) +. .+.+++. .+...+++..........||+.++|+|||+|++|++||++|+|||+||+||||+|++|.. T Consensus 65 ~~~~~a~ds~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~alY~~~~l~rkiVd~pAeDa~R~g~~I~~ 143 (765) T protein:vir:96 65 PGLSVAMDSAYGDGPTPAA-KAAAGGQNPYVVPTMLQDWYNSQGFIGYQACAIISQHWLVDKACSMSGEDAARNGWELKS 143 (765) T ss_pred cccceeccccccccccchH-HHhhhccCccchhhHHHhhhcccCCccHHHHHHHHhCchhhhhhhcchHHhhcCCceeec Confidence 11 1222222 122223222234445567999999999999999999999999999999999999999853 Q ss_pred cchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCC-CchhccccCCccccc Q lcl|Aclame:pro 146 GTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGD-DQIMDTPLVPRPYTV 224 (695) Q Consensus 146 ~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d-~~~~~~Pl~~~~~~i 224 (695) . +.+.+++++++|++++++|++|++|++|++|+|||||++++|+++++ +..|++|| ++++| T Consensus 144 ~----------------~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~~PL--~~~~I 205 (765) T protein:vir:96 144 D----------------GRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYYEKPF--NPDGI 205 (765) T ss_pred C----------------ccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcchhhccc--ccccc Confidence 2 12456788999999999999999999999999999999999999764 56799999 55689 Q ss_pred cCcceEEEEEecchhccccc--eecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHH Q lcl|Aclame:pro 225 PKGSFQGLRVVEPYWVTPNN--YNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMP 302 (695) Q Consensus 225 ~~g~l~~l~v~d~~~i~p~~--~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~ 302 (695) ++|+|++|+|+||+|++|.. ++..||++|+||+|++|+|+|++||+||||+|.|.++|++++++|+|||+|++|++|+ T Consensus 206 ~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i~g~~IH~SRli~~~g~~lpd~lk~~~~~~G~Svlq~~yd 285 (765) T protein:vir:96 206 APGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWIISGKKYHRSHLVVVRGPQPPDILKPTYIFGGIPLTQRIYE 285 (765) T ss_pred ccceeeEEEEechhhcccccchhccccccccccCcceeeeecCceeccceEEEecCCCchhhhccccCccCccHHHHHHH Confidence 99999999999999999953 4567999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCChHHHH Q lcl|Aclame:pro 303 YIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQ 382 (695) Q Consensus 303 ~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~ 382 (695) +|++|+++++++++|++++++.|+|+++++.+++. +++.+|++++++++||+|++++|+ +|+|++++++||||++++ T Consensus 286 ~I~~~~~t~~~~a~Ll~k~~~~v~k~~~~~~l~~~--~~l~~r~~~~~~~r~n~g~~~id~-ee~~e~~s~~lsgl~d~l 362 (765) T protein:vir:96 286 RVYAAERTANEAPLLAMSKRTSTIHVDVEKAIANE--DAFNARLAFWIANRDNHGVKVIGI-DETMEQFDTNLSDFDSVI 362 (765) T ss_pred HHHHHHHHHHHHHHHHHHhccceeeechHhhhccH--HHHHHHHHHHHHhcCCceeEEecC-CcceeEEecccCCHHHHH Confidence 99999999999999999999999999999888753 579999999999999999999996 789999999999999999 Q ss_pred HHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEecccc Q lcl|Aclame:pro 383 AQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALR 462 (695) Q Consensus 383 ~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~ 462 (695) ++++++|||+++||+|||||+||+|||||||+|++||||+|+++||+.|+|.|++|+++|+++ +.++++|+|+|+||+ T Consensus 363 ~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s--~~i~~d~~i~FnpL~ 440 (765) T protein:vir:96 363 MNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISYHEELESIQEHIFDPLLERHYLLLAKS--ESIDVQLEIVWNPVD 440 (765) T ss_pred HHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCcceEEeCCCC Confidence 999999999999999999999999999999999999999999999999999999999999988 567889999999999 Q ss_pred ccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh------hhh----hhhhhhhh Q lcl|Aclame:pro 463 ELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPAD------DDI----DGVLTYVQ 532 (695) Q Consensus 463 ~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~ 532 (695) ++|++|+|++++++++++++|+++|+++++++++.++.+..+++......+........ ... ........ T Consensus 441 ~~sekEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~~~~~~~~~~~~~e~ 520 (765) T protein:vir:96 441 STTSQQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAELEKAGAQSAKAKGEA 520 (765) T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCccccccccCCCcccccccCcc Confidence 99999999999999999999999999999999999998887776543322211100000 000 00000000 Q ss_pred -----------hhhhhcccccccccCC--------------------Cccchhhhhh-------hhh------------- Q lcl|Aclame:pro 533 -----------RLAEGGDTGAPGGARA--------------------GATAPPTVAN-------VNA------------- 561 (695) Q Consensus 533 -----------~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~-------~~~------------- 561 (695) .........+...... .......... ... T Consensus 521 ~~~~a~p~~~eg~~~~~~~~p~~~~p~~~~~~~~~g~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~~ 600 (765) T protein:vir:96 521 ERAEAQAGAVEGAGDPVPAAPRGTKPLAKAAEEGAGEAATPPSRPNPRAELRNLLSDLLSKLEALDDAQAPDGVDIEQDD 600 (765) T ss_pred ccccCCCCccCCCCcccccCCcccCCccccccccCccccCccccccccccchhcccchhhhhhccccccccCCCCCCCCc Confidence 0000000000000000 0000000000 000 Q ss_pred ------------ccccccc-----------cccCceEEEEEEEEEcCCeEEEEEeCCCceeCCcceeCCCCCHHHHHHHH Q lcl|Aclame:pro 562 ------------NVKPREA-----------GAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRE 618 (695) Q Consensus 562 ------------~~~~~~~-----------~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~lPGG~vE~gEs~~~aa~RE 618 (695) ....... .+...++.+.+..+.- +-|.|.+-.|...+ T Consensus 601 ~~a~~~a~~ps~a~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i--------------e~p~g~~r~g~~~~------ 660 (765) T protein:vir:96 601 APGLKRTSKPSVSGMEPSVFSSNRIVGPRDHSELQRIKVNGITTLI--------------ENPRGSIRQGKDGS------ 660 (765) T ss_pred cchhhhhhccccCCCCCcccCCCCCCCCcccccccceeecceEeee--------------eCccceeeecCCCc------ Confidence 0000000 0000011111111110 11223333322210 Q ss_pred HHH------------hcCceEeEEEEecCcccEEEEEEEEEeeCCccccCchhhh-hccCCHHHHhh-hc---------- Q lcl|Aclame:pro 619 TRE------------ETGYDHDGELVPLGKFDGFFHAFVAHLEPFDVELNDEHTA-FDWFNPDELPH-PL---------- 674 (695) Q Consensus 619 v~E------------EtGl~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~-~~W~~~~el~~-~l---------- 674 (695) |+ =-|.+-....+..+....-..+|++.-...+-. -+||.- +.+-+.++... .| T Consensus 661 -w~~~~~~~yg~~~~~~g~d~~~~d~~~~~~~~~~~~~~~~q~~~~~~-fde~k~~~~~~~~~~a~~~y~~~~~~~~~~~ 738 (765) T protein:vir:96 661 -WRVQMKHHYGFIKGTKGADGDEVDCFVGPNLGSKRVFVVNQVNKDGQ-FDEHKCMLGFNNINDAKSGYLSCFRPGWDGL 738 (765) T ss_pred -cCcccccccceeeecccccCcccceeecCCCCCceeEEEeeecCCCC-cccceeeecCCCHHHHHHHHHhccccccccC Confidence 11 011111111111111111235566544321111 134432 23333343321 11 Q ss_pred CcchHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 675 HRDTAAIVDAACKALDRLERA 695 (695) Q Consensus 675 ~~~~~~~i~~~~~~l~~~~~~ 695 (695) -.=+.-.+++|..||.--..+ T Consensus 739 ~~~~~~~~~~~~~~~~~~~~~ 759 (765) T protein:vir:96 739 GSIHEVDLPAFRRWLANGDTT 759 (765) T ss_pred CCccccCHHHHHHHHhCCCcc Confidence 001122345667777555445 No 8 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=100.00 E-value=1.3e-122 Score=688.86 Aligned_cols=597 Identities=19% Similarity=0.259 Sum_probs=398.7 Q ss_pred Cc--chhh-hhhhhhchhccccccChh------hhHHHHHHHHHhcCCCCc----ccchhhcccccc----cccccc-cc Q lcl|Aclame:pro 1 MS--RRNA-KKRTQLAHTGRRPEVAKA------AALAAAATIATATAAQPV----PADMGRRGALNA----LDAAPV-AE 62 (695) Q Consensus 1 ~~--~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~-~~ 62 (695) |- .||| |-|.++.++..|-|+.-+ ++|-+. .+....-|. |+|.+|...... .+..+. .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (862) T protein:vir:99 1 MFKKLFKRFLIRQEQSPEPTPVEASIADEIPRHDPLDPL---ARTRQNWPVQKEKPNPIIRSVKDFPFVEISDSVNAKSV 77 (862) T ss_pred ChhHHHHHHhhhhhcCCCCccchhhhhhhccccCccchH---HhhcccCCcccccCCCCCCcccccccccccccccchhh Confidence 43 3333 224444444444333222 222221 122222211 111112111100 000000 00 Q ss_pred --cchhhhhhhccccc--CCCCcccccccccccc--ccc----ccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcc Q lcl|Aclame:pro 63 --PSPSLRLARQFEVD--VSNYTPRERRAASYAL--DFN----GTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVL 132 (695) Q Consensus 63 --~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~ 132 (695) ....++.+.++.+. ++....+ ......++ ... ..+..+.+||...+|+||++|++|++||++|+|||+| T Consensus 78 ~~~~~a~~~a~~~~~~~~~~~~~Dg-l~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~gyql~alY~~~~larkiVd~p 156 (862) T protein:vir:99 78 SGKNFAMDSAVRSAIKAITGFAMDD-GGGAPVPIGAEGKQSSYAVPEALQDWYLSQGFIGHQACALIAQHWLVDKACSLA 156 (862) T ss_pred hhhhhcchhhcchhhhhhhhhhhhc-chhhhhhccccccccccccchhccccccccCcccHHHHHHHHhCchhhhhhhhh Confidence 01122222222211 0000000 00000111 011 1233456788899999999999999999999999999 Q ss_pred hHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcC-CCc Q lcl|Aclame:pro 133 ADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKG-DDQ 211 (695) Q Consensus 133 a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~-d~~ 211 (695) |+||||+|++|..... ..+.+++++++|++++++|++|++|++|++|+|||||+++++++++ |+. T Consensus 157 AeDatR~g~~I~~~~d--------------~~e~~~e~~~~ie~~~~rL~v~~~l~eair~~RLyGga~ililv~~~D~~ 222 (862) T protein:vir:99 157 GEDAIRNGWHLKSLGE--------------GEEIDEESLEKFKAIDVEFKVKENLIEFNRFKNVFGIRVAIFVVDSEDPD 222 (862) T ss_pred hHHHhhCCceEeecCc--------------ccccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEEecCcCch Confidence 9999999999964322 2355788999999999999999999999999999999999999866 456 Q ss_pred hhccccCCccccccCcceEEEEEecchhccccc--eecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhccc Q lcl|Aclame:pro 212 IMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNN--YNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTY 289 (695) Q Consensus 212 ~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~--~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~ 289 (695) .|++||+ +++|++|+|++|+||||+|++|.. ++..||++|+||+|++|+|+|++||+||||+|.|.++|++++++| T Consensus 223 ~LsqPLn--~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I~g~~IH~SRliif~g~~vpd~lk~ay 300 (862) T protein:vir:99 223 YYEKPFN--PDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWIISGQKYHRSHLIIARGPQPADILKPTY 300 (862) T ss_pred hhhcCcC--cccccccceeEEEEechhhhcccccccccccccccccCCceeeeecCeeeccceeEEecCCCchhhhhccC Confidence 7999994 568999999999999999999843 567899999999999999999999999999999999999999999 Q ss_pred CCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeE Q lcl|Aclame:pro 290 SFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF 369 (695) Q Consensus 290 ~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~ 369 (695) +|||+|++|++|++|++|+++++++++|++++++.|+|+++++.++++ ..+.+|+++++++++|+|++++|+ +|+|+ T Consensus 301 ~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~v~ktd~l~~l~~e--d~l~~r~~~~~~~rdN~Gi~liD~-eEe~e 377 (862) T protein:vir:99 301 IFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTTAIHTDTAKAIANE--DKFIQRLMFWVRYRDNHAVKVLGT-DETME 377 (862) T ss_pred CccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeechhHhhhccH--HHHHHHHHHHHhccCcceeEEecC-CCcee Confidence 999999999999999999999999999999999999999999988763 568999999999999999999996 78999 Q ss_pred EEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 370 QFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA 449 (695) Q Consensus 370 ~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~ 449 (695) +++++||||++++++++++|||+++||+|||||+||+|||||||+|++||||+|+++||++|+|.|++|+.++++ ++| T Consensus 378 ~ls~slSGL~dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~D~~nYyD~I~s~QE~~L~P~LerL~~li~~-~lg- 455 (862) T protein:vir:99 378 QFDTSLADFDAVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEFETISYHEELESIQEHVYMPFLQRHYLISRL-SLG- 455 (862) T ss_pred EEecccCChHHHHHHHHHHHHhhhCCCceeecccCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC- Confidence 999999999999999999999999999999999999999999999999999999999999999999999987765 455 Q ss_pred CCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 450 VDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLT 529 (695) Q Consensus 450 ~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (695) ++++|+|+|+||+++|++|+|++++++++++++++++|++++++++..|+.+..+++......+............. . T Consensus 456 ~~~d~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~-~- 533 (862) T protein:vir:99 456 IQHEIDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLA-A- 533 (862) T ss_pred CCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCccccc-c- Confidence 67899999999999999999999999999999999999999999999999887777665433322211111000000 0 Q ss_pred hhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcCCeEEEEEe-CCCceeCCcceeCCC Q lcl|Aclame:pro 530 YVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKR-PAGDWGLPAGKVEGN 608 (695) Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r-~~g~W~lPGG~vE~g 608 (695) ....+.... ... ...... . . .+..+-.+... ..+ ..+. +|--..- T Consensus 534 -~e~~g~a~~-----------~ap-~de~~a-----------g-a--~~~~~e~d~~~---~p~~~~~~----~g~~~~~ 579 (862) T protein:vir:99 534 -YQKAGAAQE-----------TAS-AKETQA-----------G-A--AVTTAEGDQPN---VQMVPSMK----PGQMVGP 579 (862) T ss_pred -cccCCcccc-----------ccc-cccccc-----------c-c--CCccccCCccc---ccccCCCC----CCCcccc Confidence 000000000 000 000000 0 0 00000001110 000 0000 0111111 Q ss_pred CCHHHHHHHHHHHhcCceEeEEEEecCcccEEEEEEEEEeeCCccccCchhhhhccCCHHHHhhhcCcchHHHHHHHHHH Q lcl|Aclame:pro 609 ETPEEAARRETREETGYDHDGELVPLGKFDGFFHAFVAHLEPFDVELNDEHTAFDWFNPDELPHPLHRDTAAIVDAACKA 688 (695) Q Consensus 609 Es~~~aa~REv~EEtGl~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~l~~~~~~~i~~~~~~ 688 (695) +...+++.+|..+-+ .=.|-+..|+...-...+..++...+.. T Consensus 580 t~~~~a~~p~~~~~~-------------------------------------~~~~~~~~e~~~~~~~~~~~v~~~~~~~ 622 (862) T protein:vir:99 580 EVGITAPMPEDDAPV-------------------------------------AGVVAKLAELQQAQMGAVTGVLARLVEQ 622 (862) T ss_pred ccccccCCCcccccc-------------------------------------CcccccchhhhcCcchhhcchhhhhHHH Confidence 111222222222211 1122233333221111111111111111 Q ss_pred HHHhccC Q lcl|Aclame:pro 689 LDRLERA 695 (695) Q Consensus 689 l~~~~~~ 695 (695) |++...+ T Consensus 623 ~~~~~~~ 629 (862) T protein:vir:99 623 LDRMHDR 629 (862) T ss_pred HHhhhhh Confidence 1111111 No 9 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=100.00 E-value=3.5e-114 Score=642.58 Aligned_cols=417 Identities=12% Similarity=0.118 Sum_probs=339.8 Q ss_pred ccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCc Q lcl|Aclame:pro 62 EPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWG 141 (695) Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~ 141 (695) -+....|++.|+. +++.++ +.| ....+|.||++|++|++||++|||||+||+||||+|+ T Consensus 1 ~~~~~~d~~~~~~---~~~~~~----~~~--------------~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~ 59 (427) T protein:vir:10 1 MKIVKHDGYNDIF---NGGADG----SPK--------------PFFMSDASYHVGSFYNDNATAKRIVDVIPEEMVTAGF 59 (427) T ss_pred CCccccchHHHHh---hcCCCC----ccc--------------CccccCchHHHHHHHHcCchhhhhhccchHHhhcCCc Confidence 2222334444431 111111 011 1123788999999999999999999999999999999 Q ss_pred eeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCcc Q lcl|Aclame:pro 142 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRP 221 (695) Q Consensus 142 ~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~ 221 (695) +|.. + ++.++|+++|++|++|++|++|++|+|||||++++|++++ +..+++|+ T Consensus 60 ~i~g--------------------~--~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d-~~~l~~p~---- 112 (427) T protein:vir:10 60 KMSG--------------------V--KDEKEFKSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKD-NRMLTSQA---- 112 (427) T ss_pred cccC--------------------c--cHHHHHHHHHHHhhHHHHHHHHHHhccccceeEEEEEecC-CCcccccc---- Confidence 9831 1 1335799999999999999999999999999999999974 44577776 Q ss_pred ccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc------eEEchhhEEEecCCcchhhhhcccCCCCch Q lcl|Aclame:pro 222 YTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG------TEVHATRLHTIVSRPVGDMLKPTYSFAGIS 295 (695) Q Consensus 222 ~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S 295 (695) +++|+|++|+|+|++|++|..++ .||++|+||+|++|+|+| ++||+||||+|.|.++|+++++.++|||.| T Consensus 113 --~~~g~l~~l~v~d~~~~~~~~~~-~dp~s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S 189 (427) T protein:vir:10 113 --KPGAKLEGVRVYDRFAITVEKRV-TNARSPRYGEPEIYKVSPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGAS 189 (427) T ss_pred --CCCcceeEEEEechhcccccccc-cCccccccCcceEEEEecCCCCcceEEccccEEEecCCCchhhhcccCCcccch Confidence 36789999999999999998876 699999999999999976 589999999999999999999999999999 Q ss_pred HH-HHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHh-hcc-hHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEe Q lcl|Aclame:pro 296 MT-QLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQA-LMP-GANVDLSMRAELINRYRDNRNILFLDKATEEFFQFN 372 (695) Q Consensus 296 ~l-~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~-l~~-~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~ 372 (695) +| |++|++|++|+++++++++|++++++.|+|++++.. ++. +.+..+.+|++.++++++|++.+++|+++|+|++++ T Consensus 190 ~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~v~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~ 269 (427) T protein:vir:10 190 VLNKSLIDAICDYDYCESLATQILRRKQQAVWKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLN 269 (427) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEe Confidence 87 679999999999999999999999999999976554 433 345678999999999999999999998889999999 Q ss_pred cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCC Q lcl|Aclame:pro 373 TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDP 452 (695) Q Consensus 373 ~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~ 452 (695) ++||||++++++++++|||+++||+|||||+||+|||||||+|++||||+|+++||+.++|+|++|+++++++ + T Consensus 270 ~~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i~~s------~ 343 (427) T protein:vir:10 270 SDISGVPEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFIVDE------E 343 (427) T ss_pred cccCChHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------C Confidence 9999999999999999999999999999999999999999999999999999999999999999999999977 4 Q ss_pred ceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh-hhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 453 SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK-LDANDDPGVPADDDIDGVLTYV 531 (695) Q Consensus 453 d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 531 (695) +|+|+|+|||++|++|+|++++++++++++++++|+++++++++.|+.......... ....... ...... T Consensus 344 ~~~~~f~pL~~~s~kEkaei~~~~a~a~~~~~~~gvi~~~e~r~~L~~~~~~~~~~~~~~~~~e~-~~~~~e-------- 414 (427) T protein:vir:10 344 EWSIEFEPLSVPSKKEESEITKNNVESVTKAITEQIIDLEEARDTLRSIAPEFKLKDGNNINIRE-PEETTE-------- 414 (427) T ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhhccccCCCCccccccc-cchhcC-------- Confidence 899999999999999999999999999999999999999999998875432221110 0000000 000000 Q ss_pred hhhhhhcccccccccCCCccchhhh Q lcl|Aclame:pro 532 QRLAEGGDTGAPGGARAGATAPPTV 556 (695) Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (695) ..+ .......... T Consensus 415 --------~~p----~~~e~~~d~~ 427 (427) T protein:vir:10 415 --------PEP----GLGEKLEDEN 427 (427) T ss_pred --------CCC----CCCCCCCCCC Confidence 000 0000000000 No 10 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=100.00 E-value=2.1e-113 Score=638.36 Aligned_cols=432 Identities=15% Similarity=0.194 Sum_probs=357.9 Q ss_pred chhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCcee Q lcl|Aclame:pro 64 SPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEA 143 (695) Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i 143 (695) .-.+|++.|+.... |+.. +....++++...+.+|++|++|++||++|++||+||+||||+|++| T Consensus 1 ~~~~D~~~~~~~~~--g~~~--------------~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~vd~~a~d~~r~~~~i 64 (437) T protein:vir:52 1 MKFFDGIKSLALKL--GSKQ--------------EQTYYSPSLSLTDDLVQLEALWRDNWIANKVCIKRPEDMVRNWREI 64 (437) T ss_pred CchhhhhHhHHhcC--CCcc--------------ccceeecCccccccHHHHHHHHHhCchhhHHhhcchHHhhcCCceE Confidence 44566666665422 2221 1111234555567889999999999999999999999999999998 Q ss_pred eccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCcccc Q lcl|Aclame:pro 144 IGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYT 223 (695) Q Consensus 144 ~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~ 223 (695) .. .+.+++++++|++++++|++|++|++|++|+||||+++++|++++ ..+++||+. T Consensus 65 ~~------------------~d~~~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~--~~~~~pl~~---- 120 (437) T protein:vir:52 65 YS------------------NDLNSKQLDLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDS--QNTSAPLKP---- 120 (437) T ss_pred ec------------------CCCCHHHHHHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecC--CCccccccc---- Confidence 53 235678889999999999999999999999999999999998865 458999952 Q ss_pred ccCcceEEEEEecchhccccceecccccccccCCceeEEEcce----EEchhhEEEecCCcchhhhhcccCCCCchHHHH Q lcl|Aclame:pro 224 VPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGT----EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQL 299 (695) Q Consensus 224 i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~----~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~ 299 (695) .|.+++|+|+|+|+++|..++..||++|+||+|++|+|+|. +||+||||+|.|.++| ++.++|||+|++|+ T Consensus 121 --~~~~~~~~v~~~~~v~~~~~~~~dp~s~~fg~p~~y~v~~~~~~~~iH~SRii~~~~~~~~---~~~~~~~G~s~le~ 195 (437) T protein:vir:52 121 --TERLKRLIILPKWKISPTGTKDDDVLSPNFGRYSEYSILGGSQSITVHHSRLIILNANDAP---LSDNDIWGVSDLEK 195 (437) T ss_pred --CCceeEEEEechhhccccccccccccccccCcceEEEEecCCcceeEccceeEEecCccCC---CccccccCCchHHH Confidence 46899999999999999888888999999999999999874 8999999999999998 46799999999999 Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccceeeec-hHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCCh Q lcl|Aclame:pro 300 AMPYIDNWLRTRQSVSDIVKQFSVSGILMD-LAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGL 378 (695) Q Consensus 300 ~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~-~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl 378 (695) +|++|.+|+++++++++|++++++.|+|++ +++.++.+.++.+.+|+++++.+++|+|++++|+ +|+|++++++|||| T Consensus 196 ~~~~i~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~e~~~~~~sgl 274 (437) T protein:vir:52 196 IIDVLKRFDSASVNVGDLIFESKIDIFKIAGLSDKIAAGMENEVASVISAVQEIKSATNSLLLDA-ENEYDRKELTFTGL 274 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCceecchHHHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcC-CcceEEEecCcCCH Confidence 999999999999999999999999999998 5567887778889999999999999999999997 68999999999999 Q ss_pred HHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEe Q lcl|Aclame:pro 379 DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQW 458 (695) Q Consensus 379 ~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f 458 (695) ++++++++++||++++||+|+|||+||+|| ||||+|++||||+|+++||+.++|.|++++++|+++.+|.+|++|+|+| T Consensus 275 ~~~l~~~~~~iaaa~~iP~t~L~G~s~~Gl-asge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~~~~~~~f 353 (437) T protein:vir:52 275 KDLLTEFRNAVAGAADMPVTILFGQSVSGL-ASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLPADWWFEF 353 (437) T ss_pred HHHHHHHHHHHHHHhcCchhhhcCcCcccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEe Confidence 999999999999999999999999999999 8999999999999999999999999999999999999999999999999 Q ss_pred ccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhc Q lcl|Aclame:pro 459 NALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGG 538 (695) Q Consensus 459 ~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (695) +|||++|++|+|+++++.++++++++++|+++++++++.|+....++.... +..+...... ....... T Consensus 354 ~pL~~~s~kekae~~~~~a~a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~---~~~~~~~~~~-~~~~~~~-------- 421 (437) T protein:vir:52 354 VPLTTVKQEQQINMLNTFATAANTLIQNGVLNEYQIANELRESGLFANISA---EHIEELKNAD-EFAGNFE-------- 421 (437) T ss_pred CCcCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCc---cccccccCCC-CCCCccC-------- Confidence 999999999999999999999999999999999999999877544332211 1111000000 0000000 Q ss_pred ccccccccCCCccchh Q lcl|Aclame:pro 539 DTGAPGGARAGATAPP 554 (695) Q Consensus 539 ~~~~~~~~~~~~~~~~ 554 (695) ................ T Consensus 422 ~~~~~~~~~~~~~~~~ 437 (437) T protein:vir:52 422 EPEKMEGAQVQNSEDQ 437 (437) T ss_pred CCCCCCCCCCCCCCCC Confidence 0000000000000000 No 11 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=100.00 E-value=8.9e-114 Score=640.37 Aligned_cols=413 Identities=14% Similarity=0.135 Sum_probs=342.1 Q ss_pred chhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCcee Q lcl|Aclame:pro 64 SPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEA 143 (695) Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i 143 (695) =..+|++.|..+ |+.. ++.+ +.+..+.-+|++|++|++||++|++||+||+||||+|++| T Consensus 1 ~~~~D~~~n~~~--gg~~-----~~~~-------------~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i 60 (422) T protein:vir:10 1 MVKTDSYANIFL--GGSD-----GSEI-------------YGSLQNQAPTILASLYADNALVRRIIDTIPETALAAGFHI 60 (422) T ss_pred CccchhhHHHHc--CCCC-----Cccc-------------cCcccccCHHHHHHHHHhChhhHHHHhhhhHHHhcCCccc Confidence 233444444321 1111 1111 1111234458999999999999999999999999999997 Q ss_pred eccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCcccc Q lcl|Aclame:pro 144 IGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYT 223 (695) Q Consensus 144 ~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~ 223 (695) . +.+ +.++++++|++|++|++|++|++|+|||||++++|+++ |+..+++||+. T Consensus 61 ~--------------------~~~--~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~-d~~~~~~Pl~~---- 113 (422) T protein:vir:10 61 D--------------------GID--DEPAFWSRWDDLEMTQNINDAWSWARLFGGAAIVAIVK-DNRALTSPVRE---- 113 (422) T ss_pred c--------------------CCC--HHHHHHHHHHHhhHHHHHHHHHHhhccccceEEEEEec-CCCCccccccc---- Confidence 3 111 22468999999999999999999999999999999996 56779999953 Q ss_pred ccCcceEEEEEecchhccccceecccccccccCCceeEEEcc------eEEchhhEEEecCCcchhhhhcccCCCCchHH Q lcl|Aclame:pro 224 VPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMT 297 (695) Q Consensus 224 i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l 297 (695) .|+|++|+|+|++|++|..++ .||++|+||+|++|+|++ ++||+||||+|.|.++|+++++.++|||.|++ T Consensus 114 --~g~~~~l~v~d~~~i~~~~~~-~dp~s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l 190 (422) T protein:vir:10 114 --GAELETVRVYDRTQVKVQTRE-ENPRNARFGEPLTYRITTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVL 190 (422) T ss_pred --cCceeeEEeeccccccchhcc-cCccccccCcceEEEEecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhH Confidence 468999999999999999887 599999999999999976 68999999999999999999999999999999 Q ss_pred HH-HHHHHHHHHHHhHHHHHHHHHhccceeeechHHhh-c-chHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecc Q lcl|Aclame:pro 298 QL-AMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQAL-M-PGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTP 374 (695) Q Consensus 298 ~~-~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l-~-~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~ 374 (695) ++ +|++|++|+++++++++|++++++.|+|++++..+ + ++....+.+|++.+++.++|++++++|+++|+|++++++ T Consensus 191 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~ 270 (422) T protein:vir:10 191 SSDILDSIKDYTNCERLATQLLKRKQQAVWKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSD 270 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecc Confidence 75 89999999999999999999999999999976554 3 334567889999999999999999999888999999999 Q ss_pred cCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCce Q lcl|Aclame:pro 375 LSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSI 454 (695) Q Consensus 375 lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~ 454 (695) ||||++++++++++|||+++||+|||||+||+|||||||+|++||||+|+++||+.++|+|++|+++|+++ ++| T Consensus 271 lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~i~~s------~~~ 344 (422) T protein:vir:10 271 IGGIDAFLDKKFDRIVALSGIHEIILKNKNVGGVSSSQNTALETFHKLVDRKRNAELLPILEFLIPFIVNA------EEW 344 (422) T ss_pred cCChHHHHHHHHHHHHhhhCCCeeeeccCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------CCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 489 Q ss_pred eEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 455 KWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQ 532 (695) Q Consensus 455 ~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (695) +|+|+||++||++|+|++++++++++++++++|+++++++++.|+................................. T Consensus 345 ~~~f~pL~~~sekekaei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 422 (422) T protein:vir:10 345 SVEFNPLAQESSKDKAEILEKNVNSIAALIAAGAMDIDEARDTLRTIAPEVKINDGSVETEVTISETSNDPLEVPTDD 422 (422) T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccCCCCCCccccchhhcCCCCCCCCCCC Confidence 999999999999999999999999999999999999999999997654443333222111111111000000000000 No 12 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=100.00 E-value=8.7e-113 Score=634.94 Aligned_cols=424 Identities=14% Similarity=0.139 Sum_probs=344.9 Q ss_pred cccccccccccccccchhhhhhhc-ccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhh Q lcl|Aclame:pro 49 RGALNALDAAPVAEPSPSLRLARQ-FEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRA 127 (695) Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~ 127 (695) -+-|-+.+. .+..+.|++.| |..+.| +.. .+|++...|.+++++++|++||++|+ T Consensus 1 ~~~~m~~~~----~~~~~~D~~~~~~~~~~g----------------~~~----~~~~~~~~~~~~~l~~~Y~~~~l~~~ 56 (435) T protein:vir:79 1 MGVFMSDKV----KAITKEDGYNEIFGSKDG----------------TFR----PNAFYMQRAAFKALSQFYEEDGMARR 56 (435) T ss_pred CCccccccc----ccchhhcchhhhhccccc----------------ccc----cCcccCCcCCHHHHHHHHhcCchhhh Confidence 122222221 22223344443 211111 111 14566666666677899999999999 Q ss_pred HhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEc Q lcl|Aclame:pro 128 MHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIK 207 (695) Q Consensus 128 ~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~ 207 (695) |||+||+||||+|++|.. .+ +.++|++++++|++|++|++|++|+|+|||++|++++. T Consensus 57 ~Vd~~aed~~r~g~~i~g--------------------~~--~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~ 114 (435) T protein:vir:79 57 IVDVIPEEMVTPGFKVDG--------------------VK--NEKSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVA 114 (435) T ss_pred hhccchHHhhcCCceecC--------------------CC--hHHHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEec Confidence 999999999999999732 11 23569999999999999999999999999999999986 Q ss_pred CCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc------ceEEchhhEEEecCCcc Q lcl|Aclame:pro 208 GDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI------GTEVHATRLHTIVSRPV 281 (695) Q Consensus 208 ~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~------~~~iH~SRli~~~~~~~ 281 (695) |+..+++||+. +|+|++|+|+|++|++|..++ .||++|+||+|++|+|+ +++||+||||+|.|.++ T Consensus 115 -d~~~~~~Pl~~------~g~i~~i~v~d~~~i~~~~~~-~dp~sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~ 186 (435) T protein:vir:79 115 -DNKMLKSPVKP------GAQLEDIRVYDRYQITIHERE-TNARSVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGERV 186 (435) T ss_pred -CCCCccccccc------CCceeeEEeechhhccchhhc-cCCcccccCcceEEEEecCCCCCceEEcceeEEEecCCcc Confidence 55679999964 379999999999999999887 59999999999999996 46899999999999999 Q ss_pred hhhhhcccCCCCchHH-HHHHHHHHHHHHHhHHHHHHHHHhccceeeechHH-hhcch-HHHHHHHHHHHHHHhcCCcee Q lcl|Aclame:pro 282 GDMLKPTYSFAGISMT-QLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQ-ALMPG-ANVDLSMRAELINRYRDNRNI 358 (695) Q Consensus 282 p~~~~~~~~~~G~S~l-~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~-~l~~~-~~~~l~~r~~~~~~~~~n~~~ 358 (695) |+++++.++|||.|++ |++|++|++|+++++++++|++++++.|+|++++. .++.+ ....+.+|+++++..++|++. T Consensus 187 p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 266 (435) T protein:vir:79 187 SNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQAVWKARDLALMCDDEEGRYAARLRLAQVDDESGVGKA 266 (435) T ss_pred hhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCc Confidence 9999999999999976 79999999999999999999999999999997554 44433 456788999999999999999 Q ss_pred EEEEcCCceeEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHH Q lcl|Aclame:pro 359 LFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDV 438 (695) Q Consensus 359 ~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l 438 (695) +++|+++|+|++++++||||++++++++++|||+++||+|+|||+||+|||||||+|++||||+|+++||+.++|+|++| T Consensus 267 ~~i~~~~e~~e~~~~~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l 346 (435) T protein:vir:79 267 IGIDATDEEYEVLNSDVSGVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETFYKLIDRKRVEDYKPILEFL 346 (435) T ss_pred eeEecCCcceEEEecccCCHHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhh-hhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 439 IVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNT-EPDGPYAGKLDANDDPG 517 (695) Q Consensus 439 ~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~-~~~~~~~~~~~~~~~~~ 517 (695) +.+++++ ++|+|+|+||+++|++|+|+++++.+++++++++.|+++++++++.++. ....++....... .+. T Consensus 347 ~~li~~s------~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~-~~~ 419 (435) T protein:vir:79 347 LPFMISE------TEWSIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQAINLKETRDTLRSICPDLKIMDNDNIE-LPE 419 (435) T ss_pred HHHhhcC------CCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccccCCCCccccc-CCc Confidence 9999876 5999999999999999999999999999999999999999999999965 3333333322221 111 Q ss_pred hhhhhhhhhhhhhhhhhhhhc Q lcl|Aclame:pro 518 VPADDDIDGVLTYVQRLAEGG 538 (695) Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~ 538 (695) ............ +... T Consensus 420 ~~d~~~~~~~e~-----g~~~ 435 (435) T protein:vir:79 420 PEDLDPEPGQEG-----GLNK 435 (435) T ss_pred cccCCCCCCCCC-----CCCC Confidence 100000000000 0000 No 13 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=100.00 E-value=4.2e-104 Score=587.34 Aligned_cols=430 Identities=16% Similarity=0.151 Sum_probs=340.6 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHH-HHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTL-VLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~-a~~~~~~~ 124 (695) |.+++. ++........++..|+.+.. |..+...... .+++..+.+++|+.| ++|++||+ T Consensus 1 ~~~~~~------a~~~~~~~~a~~~~~~~~~~--g~~~~~d~~~------------~~~~~~~~~~~~~~l~~lY~~~~l 60 (461) T protein:vir:80 1 MYSIDK------AKQAKIDSKIVNRNDFMVGH--GKANSRDKLT------------RQTPGNGQKLDLKACENLYASNSI 60 (461) T ss_pred Cccchh------hhhhhhhhhhhhhhHHHhhc--CCcchhhhhh------------ccccCcccccCHHHHHHHHHhCCc Confidence 444332 22222222233445555333 2222222222 234545567899998 78889999 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYF 204 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i 204 (695) +|+|||+||+||||+|++|. +.+++.++.|+++|++|++|++|+++++|+|+||+++++| T Consensus 61 ~r~iVd~~a~d~~r~g~~i~--------------------~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i 120 (461) T protein:vir:80 61 AMNIVDIISEDMVRAGWSLK--------------------TDNKEMKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSI 120 (461) T ss_pred cchhhccchHHhhcCCeeee--------------------cCCHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEE Confidence 99999999999999999884 3466788899999999999999999999999999999999 Q ss_pred EEcCCC---chhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc---------------- Q lcl|Aclame:pro 205 KIKGDD---QIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG---------------- 265 (695) Q Consensus 205 ~~~~d~---~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~---------------- 265 (695) .+++.+ ..+++|| ++.+++ +|++|.|+|++++++..++ .||++|+||+|++|+|.+ T Consensus 121 ~v~d~~~~~~~~~~pl--~~~~~~--~~~~l~~~~~~~i~~~~~~-~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~ 195 (461) T protein:vir:80 121 GVVSSNREQADLSTAI--DPKTIK--SIPYINTFNTQKVTQLYLN-QDMFSEHFGEVEFFEVNRVSQLGEEILSGTTAST 195 (461) T ss_pred EeecCCccccCccCCc--cccccc--ceeEEEeccccccchhhhc-ccCcCcccccceEEEEeccccccccccccccCcc Confidence 986542 3466777 444543 6889999999999887665 699999999999999964 Q ss_pred -eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHH Q lcl|Aclame:pro 266 -TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSM 344 (695) Q Consensus 266 -~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~ 344 (695) ++||+||||+|.+.++|+. +||+|++|++|++|++|+++++++++|++++++.++|+++++++.++...++.+ T Consensus 196 ~~~iH~SRii~~~~~~~~~~------~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~~~~~~~~~~~ 269 (461) T protein:vir:80 196 SEQIHRSRIIHEQGLRFEGE------TKGRSIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDALNKDDKANLTA 269 (461) T ss_pred ceEEccccEEEecCCCCCcc------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecchHHhhhchHHHHHHH Confidence 6899999999999999875 689999999999999999999999999999999999999998888877766666 Q ss_pred HHHHHHHhcCCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHH Q lcl|Aclame:pro 345 RAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVR 424 (695) Q Consensus 345 r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~ 424 (695) +++ .+++|+|++++|+ +|+|++++++||||+++++++++.|||+++||+|+|||+|| |.|||||+|++|||++|+ T Consensus 270 ~~~---~~~~~~g~~~~d~-~e~~e~~~~~lsgl~~~l~~~~~~iaa~s~iP~t~L~G~s~-g~~asge~D~~~yyd~i~ 344 (461) T protein:vir:80 270 MLD---FMFRTEALAIIKG-DEQLTKESTNVSGMKDLLDYGWDYLAGAVRMPKTVLKGQEA-GTLTGAQYDVMNYYARVS 344 (461) T ss_pred HHH---HhcCCceEEEEcC-CcceEEEecCcCCHHHHHHHHHHHHhhhhcCCeeeeecccC-CccccchHHHHHHHHHHH Confidence 654 5678999999986 78999999999999999999999999999999999999999 667999999999999999 Q ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCC---C---CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhh Q lcl|Aclame:pro 425 AYQRNALQQLMNDVIVMIQLSLFGAV---D---PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARL 498 (695) Q Consensus 425 ~~Qe~~l~p~l~~l~~~l~~s~~g~~---~---~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L 498 (695) ++||+.++|.|++|+++|+++.+|.. + .+|+|+|+|||++|++|+|+++++.++++++++++|+++++++++.+ T Consensus 345 ~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l 424 (461) T protein:vir:80 345 SIQENRLRPQLEYLTRLLMWASDDCGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETR 424 (461) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccCccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH Confidence 99999999999999999999988732 2 37999999999999999999999999999999999999999999988 Q ss_pred hhhh----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 499 NTEP----DGPYAGKLDANDDPGVPADDDIDGVLTYVQRLA 535 (695) Q Consensus 499 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (695) +... ...+..... +........... ......-+ T Consensus 425 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~e~~~g 461 (461) T protein:vir:80 425 FGRFGLENSSKFSGDSA-EIDKLAKLVYDA---YAKKNADG 461 (461) T ss_pred HHhcCCCCCccCCCCCc-hhhhhhhhcccc---ccccCCCC Confidence 6432 111111111 100000000000 00000000 No 14 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=100.00 E-value=8.3e-96 Score=541.86 Aligned_cols=423 Identities=12% Similarity=0.106 Sum_probs=314.9 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchH-HHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~-~~a~~~~~~~ 124 (695) |+.+-.++-+.+.-.....-+.+++.|+...+|...+ .....|+.. .-++|. +.++|+.||+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~--~~~~~~g~~---------------~~~~~~~l~~~Yr~~~i 63 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRH--SAWCEYGFP---------------ELVTYENLYSLYRRGGI 63 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHhcCCcccc--hhhhhcCCc---------------ccCCHHHHHHHHhcCch Confidence 5554433322222222223345667776544433332 222222211 113444 4578899999 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhh---chHHHHHHHHHhcCccceEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL---RIRDAVRTTVIHDQAFGRAH 201 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l---~~~~~~~~a~~~~Rl~G~~~ 201 (695) +|+|||.|+|+|+|.|..|+... ...+.+..+.+++.+++| ++|.+|++|++|+|||||++ T Consensus 64 a~~iVd~~~d~~~~~~~~i~~g~----------------~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~ 127 (449) T protein:vir:10 64 AHGAVEKLVGKCWQTNPEIIEGD----------------DADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAG 127 (449) T ss_pred hHHHHHhhhhhhhhcCcccccCc----------------cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEE Confidence 99999999999999999886432 122334455666666665 68899999999999999999 Q ss_pred EEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc---------eEEchhh Q lcl|Aclame:pro 202 PYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG---------TEVHATR 272 (695) Q Consensus 202 i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~---------~~iH~SR 272 (695) |+++|+ |++.|++||+ +.++|++|+|+|+++++|..++ .||+||+||+|++|+|++ ++||+|| T Consensus 128 i~i~v~-d~~~l~~Pl~------~~~~i~~i~v~~~~~i~~~~~~-~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SR 199 (449) T protein:vir:10 128 ILLHIR-DEKDWNLPAT------KGRGLQKVSVSWAGSLKVAEWD-TGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDR 199 (449) T ss_pred EEEEec-CCCCCCcccc------cCcceeeEEeeccccCChhhhh-cCCCCCCCCCceEEEEeeeccCCCccceeeccce Confidence 999995 6778999994 2358999999999999999887 599999999999999874 3799999 Q ss_pred EEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcccee------eec---hHHhhcchHHHHHH Q lcl|Aclame:pro 273 LHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGI------LMD---LAQALMPGANVDLS 343 (695) Q Consensus 273 li~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~------k~~---~~~~l~~~~~~~l~ 343 (695) |++|.+.++| |+|+|+++|+.|.+++++.+++++.+.+.....+ +++ +...++.+.+ ++. T Consensus 200 l~~~~~~~~~----------g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~~~~~e-~~~ 268 (449) T protein:vir:10 200 VFILGDYSED----------AIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSID-ELQ 268 (449) T ss_pred eEeecCCCCC----------ChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHHhhCCch-HHH Confidence 9999988765 8999999999999999999999986655332211 122 2233333322 333 Q ss_pred HHH-HHHHHhcCCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHH Q lcl|Aclame:pro 344 MRA-ELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDY 422 (695) Q Consensus 344 ~r~-~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~ 422 (695) +++ +.+..+..+.+.+++|. +++|++++++|||++++++++++.|||+++||+|||||+||+||||| + |++|||++ T Consensus 269 ~~~~~~~~~~~~~~~~~~i~~-~~d~~~~~~~~sgl~d~l~~~~q~iaaa~~IP~t~L~Gqsp~glnst-~-D~~nyyd~ 345 (449) T protein:vir:10 269 DKFNEVAGEINRGNDVLMTTQ-GATVTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSST-E-DQKYFNAR 345 (449) T ss_pred HHHHHHHHHHhccchheeecC-CcceEEEecccCChhHHHHHHHHHHHHHhCCCeeeeeccCccccccc-h-hHHHHHHH Confidence 322 23334444555667775 67899999999999999999999999999999999999999999865 3 89999999 Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhh---cchhhhhhhhhh Q lcl|Aclame:pro 423 VRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQ---VIRPDQVAARLN 499 (695) Q Consensus 423 i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g---~i~~~e~r~~L~ 499 (695) |+++|+ .|+|.|++|+++|+++.+|.+|++|+|+|+|||+||++|+|++++++|+++++++++| +++.+|+++.+. T Consensus 346 i~~~Q~-~l~p~le~l~~~l~~s~~g~~~~d~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~ 424 (449) T protein:vir:10 346 CQSRRV-DLSFEIEDFCDKLIELKIIDAVAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAG 424 (449) T ss_pred HHHHHH-hhhHHHHHHHHHHHHhhcCCCCCceeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHHhc Confidence 999987 5999999999999999999999999999999999999999999999999999999887 889999998887 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 500 TEPDGPYAGKLDANDDPGVPADDDI 524 (695) Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (695) ..+...................... T Consensus 425 ~~~~~~~~~~~e~~de~~~~~d~~a 449 (449) T protein:vir:10 425 YDNDDEEPLGEEDGDEEDKATDSAA 449 (449) T ss_pred ccCCCCCCCCCCCCccccccCCcCC Confidence 6654443322222221111111111 No 15 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=100.00 E-value=4.4e-55 Score=318.61 Aligned_cols=201 Identities=18% Similarity=0.228 Sum_probs=171.2 Q ss_pred eeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccC Q lcl|Aclame:pro 325 GILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGIT 404 (695) Q Consensus 325 v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~s 404 (695) |||++++..+.+.++..+.+|+++++.+|+|++++++|+++|+|++++++||||++++++++++|||+++||+|||||+| T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ld~~~e~~e~~~~~lsGl~d~l~~~~~~iaa~s~iP~t~LfG~s 80 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQVDNNSGVGQAIGIDADSEEYNVLNSDIGGIDTFLSQKFDRIVALSGIHEIILKGKN 80 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHHHHhhhhhhhheeecCCcceeeeecCcCChHHHHHHHHHHHHhHhcCchhhhcCCC Confidence 99988666555555778999999999999999999999888999999999999999999999999999999999999999 Q ss_pred cccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhh Q lcl|Aclame:pro 405 PTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV 484 (695) Q Consensus 405 p~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~ 484 (695) |+|||||||+|++||||+|+++||+.++|+|++|+++++ .+++|+|+|+|||+||++|+|++++++++++++|+ T Consensus 81 p~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~~~------~~~~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~ 154 (201) T protein:vir:10 81 VGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPFIV------TEQEWSVEFNPLSQVSDKDKSEILEKNVNSVAALI 154 (201) T ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCceEeeCCCCCCCHHHHHHHHHHHHHHHHHHH Confidence 999999999999999999999999999999999988654 57899999999999999999999999999999999 Q ss_pred hhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 485 QEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYV 531 (695) Q Consensus 485 ~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (695) +.|++++.++++.|+....+++.................+....... T Consensus 155 ~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~e~~dp~~~~~~~ 201 (201) T protein:vir:10 155 AAGIIDADEARDTLRAISTEVKIGEGSIQTEVVINESEDPLDVSANN 201 (201) T ss_pred HcCCCCHHHHHHHHHhcCCcCCCCCCCCCccccccccCCCCCCCCCC Confidence 99999999999999999888876543322221111111000000000 No 16 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=99.70 E-value=5.6e-17 Score=109.68 Aligned_cols=393 Identities=12% Similarity=0.033 Sum_probs=215.3 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCc-hHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG-FPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g-y~~~a~~~~~~~ 124 (695) |..+..+.... .+...+.+ ....|... +..| |-.-....+++. T Consensus 1 m~f~~~~~~~~-~~~~~~~~----------------------------------~~~~~~g~-~~~~~~v~~~~al~~~~ 44 (409) T protein:vir:10 1 MLFRKGFKNQS-QEISIDDK----------------------------------KILEWLGI-NPSETYVNGKSCLKQAT 44 (409) T ss_pred CcccccccCcC-CCCCCChH----------------------------------HHHHHhcC-CcCcceechhhhhccHH Confidence 55443333221 11100000 00011100 0000 101122346788 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~ 203 (695) ++++|+++|.+.-.--+++.... .|. ....+......|...=...--+..|.+.+.+ .-++|-++++ T Consensus 45 v~~~i~~ia~~ia~lp~~~~~~~------~~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~ 112 (409) T protein:vir:10 45 VFGCIRILSDNISKLPIKIYQKK------DGI------KRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVA 112 (409) T ss_pred HHHHHHHHHHhhhhCceEEEEec------CCe------eeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEE Confidence 89999999999876644442110 000 0001111222222222223334455554444 4568888888 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc---c--eEEchhhEEEecC Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---G--TEVHATRLHTIVS 278 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---~--~~iH~SRli~~~~ 278 (695) +.-+. .|.+.+|.++++.++++...+ +... .+.....|.+. | ..++++.|||+.+ T Consensus 113 i~r~~-----------------~G~~~~L~~i~~~~V~v~~~~--~~~~-~~~~~~~y~~~~~~g~~~~~~~~evih~r~ 172 (409) T protein:vir:10 113 LDFKK-----------------NGEIKGLYPLKSDGMKIFVDD--TGLL-NSENNVWYLYTDDLGQRHKFMSDEILHFKG 172 (409) T ss_pred EEEcC-----------------CCcEEEEEEEcCCceEEEEcC--Cccc-cccceEEEEEEeCCceeEEeccccEEEecC Confidence 75422 245678899999988764321 2221 12222234432 2 4689999999976 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRDNR 356 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~ 356 (695) ... ..+.|.|.++.+.+.|.....+......++...... +++++ ..++.+..+.+.++++.....-.|. T Consensus 173 ~~~-------d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~n~ 243 (409) T protein:vir:10 173 LTA-------DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYA--GDLNPEAEEVFKENFERMSSGLKNA 243 (409) T ss_pred cCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC--CCCCHHHHHHHHHHHHHHhcccccc Confidence 542 235799999999999999888888888877764432 44544 3466555566666666544433344 Q ss_pred -eeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhH Q lcl|Aclame:pro 357 -NILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQ 433 (695) Q Consensus 357 -~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p 433 (695) ++++++ ++.+|++++.+..+ +-+......++||++.+||..+| |...++-.++.|...+.||..+ |.| T Consensus 244 ~~~~vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~e~~~~~f~~~~-------l~P 314 (409) T protein:vir:10 244 HRIAMLP-IGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQL-NDLDRATHSNITEQNREFYIDT-------LQS 314 (409) T ss_pred CCceecC-CCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHc-CCCCCCccccHHHHHHHHHHHH-------HHH Confidence 466676 46789998877654 44667778899999999999987 5454555666676777887544 778 Q ss_pred HHHHHHHHHHHHhcCC--CCCceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 434 LMNDVIVMIQLSLFGA--VDPSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 434 ~l~~l~~~l~~s~~g~--~~~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) .++.+-+.+-+..+.. ...++.++ ++.|...+.+++ ++...+++..|+++++|+|..+...+..+.... T Consensus 315 ~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ll~~d~~~~-------~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD~~ 387 (409) T protein:vir:10 315 ILNMYELEINYKLFLISEIKNGFYSKFNVDTILRADIKTR-------YESYKEAIQNGFKTPNEIRELEEDEPLEGGDVL 387 (409) T ss_pred HHHHHHHHHHHhhcCchhccCCcEEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 8887766665444422 23444444 556666666665 456667889999999999998766554321111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhc Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGVLTYVQRLAEGG 538 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (695) ... .. .............+... T Consensus 388 ~~~-----~n--~~~~~~~~~~~~kgGe~ 409 (409) T protein:vir:10 388 LIN-----GN--MIPVKMAGEQYSKGGEK 409 (409) T ss_pred eec-----cC--ccchhhccccccccCCC Confidence 000 00 00000000000000000 No 17 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=99.64 E-value=2.6e-16 Score=106.00 Aligned_cols=398 Identities=12% Similarity=0.037 Sum_probs=207.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCch-HHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGF-PTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy-~~~a~~~~~~~ 124 (695) |.=.+.+...+.++.... ...+.. -|..+++..+. .....+.+++. T Consensus 1 Mg~f~~~~~~~~~~~~~~-----------------------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 47 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRA-----------------------DTGYVG----------LFMSGEDVSFLVPGYVRLSDNPE 47 (406) T ss_pred Ccchhhhccccccccccc-----------------------cchhhh----------hhccCcccCccccCHHHHhhcHH Confidence 333333221110000000 000000 00001111110 01123457899 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~ 203 (695) ++++|+++|+++..--+++.....+ | ....+......|...=..+--+..|.+.+.+. -|+|-+.++ T Consensus 48 v~~~i~~ia~~ia~~~~~~~~~~~~-----~-------~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~ 115 (406) T protein:vir:95 48 VRMAVHKIADLISSMTIYLMQNTED-----G-------DIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSV 115 (406) T ss_pred HHHHHHHHHHhhccCceEEEEecCC-----c-------ceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEE Confidence 9999999999988765554221110 0 01112222333333323333455555555544 456767666 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchh Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGD 283 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~ 283 (695) +.+..++ .|.+..|.++++..+++.... + | -.|.+.++.+.++.||||.-...+ T Consensus 116 ~~~~~~~---------------~g~~~~l~~i~~~~v~~~~~~--~------~--~~~~~~~~~~~~~evih~~~~~~~- 169 (406) T protein:vir:95 116 VFPKYTA---------------DGLIDELVPLTPSKVNFLDTP--D------G--YQVLYGGQTFNYDEVLHFIYNPDP- 169 (406) T ss_pred EEEEECC---------------CCcEEEEEEEcCceeEEEEcC--C------e--EEEEeccEEEchhHEEEeeccCCC- Confidence 6553322 345677889998888763221 1 1 235567888999999998743221 Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcCC-ceeEE Q lcl|Aclame:pro 284 MLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRDN-RNILF 360 (695) Q Consensus 284 ~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n-~~~~~ 360 (695) ...+.|.|.++.+.+.+.....+......++...... +++++ ..++.+..+.+.+++...-..-+| .+..+ T Consensus 170 ----~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~--~~l~~e~~~~~~~~~~~~~~g~~n~~~~~v 243 (406) T protein:vir:95 170 ----ERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVD--AATAELSSEEGRNAVFKKYLQATEAGQPWI 243 (406) T ss_pred ----CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC--CCCCHHHHHHHHHHHHHHhccccccCCcee Confidence 2345799999999999999999988888887765553 44444 345555555555555433222233 33455 Q ss_pred EEcCCceeEEEe-cc--cCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHH Q lcl|Aclame:pro 361 LDKATEEFFQFN-TP--LSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMND 437 (695) Q Consensus 361 ld~~~e~~~~~~-~~--lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~ 437 (695) +..+.++++++. .+ -+.+.+......+.||.+.+||..+| |.. +..+....+||.. -|.|.++. T Consensus 244 ~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~l-g~~-----~~~~~~~~~~~~~-------~l~P~~~~ 310 (406) T protein:vir:95 244 IPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLL-GIG-----EFNRDEYNNFINS-------TILPIAKG 310 (406) T ss_pred ecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-CCC-----CchHHHHHHHHHH-------HHHHHHHH Confidence 544456665442 23 33455777888899999999999777 532 2234445666543 48999988 Q ss_pred HHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 438 VIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPG 517 (695) Q Consensus 438 l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~ 517 (695) +-+.+-+..+....-.+.|.+..|...+.+++ ++....++..|+++++|+|..+...+..+....... T Consensus 311 ie~~l~~~l~~~~~~~~~fd~~~l~~~d~~~~-------~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~~----- 378 (406) T protein:vir:95 311 IEQELTRKLLISPDLYFKFNPRSLYAYDLKEL-------AEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVIL----- 378 (406) T ss_pred HHHHHHHhcCCCCCcEEEeechhhhcCCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec----- Confidence 88877655554322235555666666666655 456667788999999999988766543221111000 Q ss_pred hhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhh Q lcl|Aclame:pro 518 VPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVA 557 (695) Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (695) ................-+. . ........ T Consensus 379 ~n~~~~~~~~~~~~~k~g~----------~--~~~~~~~~ 406 (406) T protein:vir:95 379 ENYIPLDKIGDQSKLKGGD----------N--SGADGQTD 406 (406) T ss_pred cCccchhhcccccccCCCC----------C--CCCCCCCC Confidence 0000000000000000000 0 00000000 No 18 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=99.64 E-value=7.3e-16 Score=103.57 Aligned_cols=407 Identities=13% Similarity=0.034 Sum_probs=213.8 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.-..++-..+. +.+..++. +....+ .+ ...+..+.. |....++ +...-.. .+++.+ T Consensus 1 MG~f~~lf~~~~-----~~~~~~~~--~~~~~~--~~-~~~~~~~~~-----------~g~~~~~-~v~~~~a-l~~~~v 57 (422) T protein:vir:13 1 MGFLRGLFNKKN-----NNDEKRSN--YDEDIG--ID-ISDSNFWEK-----------FGIKLNF-SVRGKRA-LKENTV 57 (422) T ss_pred CchhhhhhhccC-----Cccchhhh--hhhccc--cc-cCcchhhhh-----------ccccCCc-ccchhhh-hccHHH Confidence 433332111110 00001000 000000 00 000000000 0000111 0011111 245678 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~i 204 (695) .++|+++|++.-.--+++.... ....+......|...=...--+..|.+.+.+. -++|-+++++ T Consensus 58 ~~ci~~ia~~iA~lp~~~~~~~---------------~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i 122 (422) T protein:vir:13 58 YVCTKIRAESIGKLSLKIYKDK---------------EEYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYI 122 (422) T ss_pred HHHHHHHHHhhhhCceEEEecC---------------cccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEE Confidence 8899999999887666553211 00111223333332222333344555555554 4578887776 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc---c--eEEchhhEEEecCC Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---G--TEVHATRLHTIVSR 279 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---~--~~iH~SRli~~~~~ 279 (695) .-+ ..|.+..|.++++.+|++... .|..-..++. .+|.+. | ..++++.+||+... T Consensus 123 ~r~-----------------~~G~~~~L~~i~~~~v~~~~~--~~~~~~~~~~-~~y~~~~~~g~~~~~~~~eiih~~~~ 182 (422) T protein:vir:13 123 ERD-----------------RKGKIIGLYPINSDNVTKIID--DDNFLSSLSK-VWYVVTDKNGKEHKLLPDEMLHFIGD 182 (422) T ss_pred EEC-----------------CCCcEEEEEEECCcceEEEEc--CCcceeccce-EEEEEEeCCCeEEEEcccceEEEcCC Confidence 532 124567889999998876533 2333333333 345543 3 35899999999864 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCC-c Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDN-R 356 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n-~ 356 (695) .. ...+.|.|.++.+.+.+.....+......++..... .+++++ +.++.+..+.+.++++.......| . T Consensus 183 ~~------~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~n~~ 254 (422) T protein:vir:13 183 IT------LDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYV--GDLDEKAKKIFKKEFESMSNGLENAH 254 (422) T ss_pred CC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeC--CCCCHHHHHHHHHHHHHHhcCccccC Confidence 32 234579999999999999888888888887776432 334444 345555556676776655443334 4 Q ss_pred eeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~ 434 (695) ++++++. +-+|+.++.+..+ +-+......+.||.+.+||...|.+.. ++-.++.|....+||..+ |.|. T Consensus 255 ~~~vl~~-g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~-~~~~sn~e~~~~~f~~~~-------l~P~ 325 (422) T protein:vir:13 255 SISLLPF-GYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLE-RATFNNLTEQQKDFYVTT-------LQSS 325 (422) T ss_pred CceecCC-CceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHHHHHH-------HHHH Confidence 5677764 6789998876654 335556778889999999998775533 344455566677776543 7888 Q ss_pred HHHHHHHHHHHhcCCC--CCceeEEe--ccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 435 MNDVIVMIQLSLFGAV--DPSIKWQW--NALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 435 l~~l~~~l~~s~~g~~--~~d~~~~f--~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) +..+-+.+-+..+... ..++.|+| ..|...|.+++ ++...++++.|+++++|+|..+...+..+..... T Consensus 326 ~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~ 398 (422) T protein:vir:13 326 LTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTR-------YEAYRIGIQGGFIEANEARRRENLPPVEGGDRLL 398 (422) T ss_pred HHHHHHHHHHhhCChhhhcCCceEEeechhhhcCCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeee Confidence 8777666655444322 23445554 46666666665 4566678889999999999987765543211110 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhccc Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDT 540 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (695) . ............ ....-+..... T Consensus 399 ~-----~~n~~~l~~~~~-~~~~~g~~~g~ 422 (422) T protein:vir:13 399 V-----NGNMIPIEMAGE-QYKKGGEKGGK 422 (422) T ss_pred e-----ccCccchhhccc-ccccCCCcCCC Confidence 0 000000000000 00000000000 No 19 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=99.64 E-value=1.3e-15 Score=102.26 Aligned_cols=412 Identities=10% Similarity=0.021 Sum_probs=210.9 Q ss_pred hhhcccc-cccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchH-HHHHHHhCh Q lcl|Aclame:pro 46 MGRRGAL-NALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLP 123 (695) Q Consensus 46 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~-~~a~~~~~~ 123 (695) |..-.++ +..+ +... + +. ...........|... +..|.. .-....+++ T Consensus 1 M~~~~~~f~~~~-r~~~-~--~~-------------------------~~~~~~~~~~~~~g~-~~~~~~v~~~~al~~~ 50 (429) T protein:vir:10 1 MDSVKKFFNFEK-RQTS-Q--VI-------------------------ELNKDDEKLLEWLGI-SPSTISVKGKNALKVA 50 (429) T ss_pred Cchhhhhhcccc-cCcc-c--cc-------------------------ccCCChHHHHHHhcC-CCCcceechhhhhccH Confidence 4444332 1111 0000 0 00 000001111122211 111111 112234688 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHP 202 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i 202 (695) .++++|+++|++.-.-=+++.....+ |. ....+......|...=....-+..|.+.+.+. -++|-+++ T Consensus 51 ~v~~~i~~ia~~ia~l~~~~~~~~~~-----~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~ 119 (429) T protein:vir:10 51 TVFACIKILSESVSKLPLKIYQEDEY-----GI------QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYA 119 (429) T ss_pred HHHHHHHHHHHhhccCceEEEEecCC-----ce------eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEE Confidence 99999999999877654443211100 00 00011112222222211222233444444443 56888888 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c--eEEchhhEEEecC Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHTIVS 278 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~--~~iH~SRli~~~~ 278 (695) ++.-+. .|.+.+|.++++.+|++...+. ....++...+|.+. | +.++++.||||.. T Consensus 120 ~i~r~~-----------------~G~~~~L~~i~~~~v~v~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~evih~~~ 179 (429) T protein:vir:10 120 NIEFDR-----------------KGKVQALWPIDASKVTVYIDDV---GLLNSKTKMWYVVNTGGQQRVLKPEEILHFKN 179 (429) T ss_pred EEEECC-----------------CCcEEEEEEEcCceeEEEEcCc---ccccccceEEEEEccCCeEEEEccccEEEecC Confidence 875321 2346678899988887642211 11122222344443 3 4689999999974 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHh-cCC Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRY-RDN 355 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~-~~n 355 (695) ... ...+.|.|.++.+.+.|.....+......++...... +++++ ..++.+..+.+.++++..... ++. T Consensus 180 ~~~------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~--~~l~~e~~~~~~~~~~~~~~g~~n~ 251 (429) T protein:vir:10 180 GIT------LDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYV--GDLNEDAKKVFRENFESMSSGLQNS 251 (429) T ss_pred CCC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcC--CCCCHHHHHHHHHHHHHHhcccccc Confidence 322 2346799999999999999888888888887665443 34443 346666556666666654443 334 Q ss_pred ceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhH Q lcl|Aclame:pro 356 RNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQ 433 (695) Q Consensus 356 ~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p 433 (695) .++++++. +-+|+.++.+..+ +-+......++||.+.+||..+|-+ ..+|-.++.|.....||.. .|.| T Consensus 252 ~~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~-~~~~~~sn~e~~~~~f~~~-------~l~P 322 (429) T protein:vir:10 252 HRIALMPV-GYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLND-LSKATLNNIEQQQQQFYTD-------TLQA 322 (429) T ss_pred CceeecCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCCCcccHHHHHHHHHHH-------HHHH Confidence 45677764 6789888866443 3455667788999999999988843 3344445556566666643 4788 Q ss_pred HHHHHHHHHHHHhcCC--CCCceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 434 LMNDVIVMIQLSLFGA--VDPSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 434 ~l~~l~~~l~~s~~g~--~~~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) .+..+-+.+-+..+.. ...++.++ +..|...+.+++ ++...+++..|+++++|+|..+...+..+.... T Consensus 323 ~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~ 395 (429) T protein:vir:10 323 TLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTR-------YEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRL 395 (429) T ss_pred HHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 8777776665444322 23344555 446777777776 446677888999999999988765443221111 Q ss_pred hhhhhhhhhhhhhhhhhh-hhhhhhhhhhcccccccccCCCccchhh Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGV-LTYVQRLAEGGDTGAPGGARAGATAPPT 555 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (695) ... ... ..... .......+........ ...... T Consensus 396 ~~~-----~n~--~~~d~~~~~~~k~g~~~~~~~~------~~~e~~ 429 (429) T protein:vir:10 396 LVN-----GNM--LPIDMAGQAYLKGGDTNGEVSK------EGNEGN 429 (429) T ss_pred eec-----ccc--cchhhccccccCCCCCCCCCCC------CCCCCC Confidence 000 000 00000 0000000000000000 000000 No 20 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=99.63 E-value=9.5e-16 Score=102.93 Aligned_cols=417 Identities=10% Similarity=0.020 Sum_probs=212.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCch-HHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGF-PTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy-~~~a~~~~~~~ 124 (695) |.=..++...-.....+.+++.. .+........|...+ -.|. -......+++. T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~-------------------------~~~~~~~~~~~~g~~-~~~~~v~~~~al~~~~ 54 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIE-------------------------LNKDDEKLLEWLGIS-PSTISVKGKNALKVAT 54 (432) T ss_pred CChHHHHHHhcCccccCcccccc-------------------------cCCchHHHHHHhCCC-cCccccchhhhhccHH Confidence 22222111000000000000000 000001111222111 1111 11123456788 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~ 203 (695) +.++|++.|+++-.--+++.....+ |. ....+......|...=....-+..|.+.+.+ --++|-++++ T Consensus 55 v~~~i~~ia~~ia~lp~~~~~~~~~-----~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~ 123 (432) T protein:vir:10 55 VFACIKILSESVSKLPLKIYQEDEY-----GI------QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYAN 123 (432) T ss_pred HHHHHHHHHHhhccCceEEEEecCC-----ce------eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEE Confidence 9999999999987665554322110 00 0011112222232222222233444444444 4568888888 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c--eEEchhhEEEecCC Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHTIVSR 279 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~--~~iH~SRli~~~~~ 279 (695) +.-+ ..|.+.+|.++++.+|++...+ +.. ..++...+|.+. | +.++++.||||... T Consensus 124 i~r~-----------------~~G~~~~L~~i~~~~v~v~~d~--~~~-~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~ 183 (432) T protein:vir:10 124 IEFD-----------------RKGKVQALWPIDASKVTVYIDD--VGL-LNSKTKMWYVVNTGGQQRVLKPEEILHFKNG 183 (432) T ss_pred EEEC-----------------CCCcEEEEEEEcCceeEEEEcC--ccc-ccccceEEEEEecCCeEEEEccccEEEecCC Confidence 6532 1245678899999888764221 111 112122234433 3 46899999999743 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHh-cCCc Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRY-RDNR 356 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~-~~n~ 356 (695) . +...+.|.|.++.+.+.|.....+......++...... +++++ ..++.+..+.+.++++..... .+.. T Consensus 184 ~------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~n~~ 255 (432) T protein:vir:10 184 I------TLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYV--GDLNEDAKKVFRENFESMSSGLQNSH 255 (432) T ss_pred C------CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcC--CCCCHHHHHHHHHHHHHHhcccccCC Confidence 2 23456799999999999999998888888877764433 34444 346555556666666554433 3344 Q ss_pred eeEEEEcCCceeEEEecccCCh--HHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLSGL--DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~lsgl--~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~ 434 (695) ++++++. +-+|+.++.+..+. -+......++||.+.+||..+| |...+|-.++.|.....||.. -|.|. T Consensus 256 ~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~~s~~e~~~~~~~~~-------~l~P~ 326 (432) T protein:vir:10 256 RIALMPV-GYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQL-NDLSKATLNNIEQQQQQFYTD-------TLQAT 326 (432) T ss_pred cceecCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCCCcccHHHHHHHHHHH-------HHHHH Confidence 5677764 67899988776544 3666777899999999999998 433344445556566667644 47888 Q ss_pred HHHHHHHHHHHhcCC--CCCceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 435 MNDVIVMIQLSLFGA--VDPSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 435 l~~l~~~l~~s~~g~--~~~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) +..+-+.+-+..+.. ...++.|+ +..|...+.++++ ++..+++..|+++++|+|..+...+..+..... T Consensus 327 ~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~-------~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~ 399 (432) T protein:vir:10 327 LTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRY-------EAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLL 399 (432) T ss_pred HHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEe Confidence 877776665444322 23344444 5577777777764 466778889999999999887654432211110 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccc Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATA 552 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695) ..... ............+....... .. ...... T Consensus 400 ~~~n~-------~~~~~~~~~~~k~~~~~~~~-~~-~~~~~~ 432 (432) T protein:vir:10 400 VNGNM-------LPIDMAGQAYLKGGDTNGEV-SK-EGNEGN 432 (432) T ss_pred ecccc-------cchhhccccccCCCCCCCCC-CC-CCCCCC Confidence 00000 00000000000000000000 00 000000 No 21 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=99.63 E-value=9.5e-16 Score=102.93 Aligned_cols=417 Identities=10% Similarity=0.020 Sum_probs=212.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCch-HHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGF-PTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy-~~~a~~~~~~~ 124 (695) |.=..++...-.....+.+++.. .+........|...+ -.|. -......+++. T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~-------------------------~~~~~~~~~~~~g~~-~~~~~v~~~~al~~~~ 54 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIE-------------------------LNKDDEKLLEWLGIS-PSTISVKGKNALKVAT 54 (432) T ss_pred CChHHHHHHhcCccccCcccccc-------------------------cCCchHHHHHHhCCC-cCccccchhhhhccHH Confidence 22222111000000000000000 000001111222111 1111 11123456788 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~ 203 (695) +.++|++.|+++-.--+++.....+ |. ....+......|...=....-+..|.+.+.+ --++|-++++ T Consensus 55 v~~~i~~ia~~ia~lp~~~~~~~~~-----~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~ 123 (432) T protein:vir:10 55 VFACIKILSESVSKLPLKIYQEDEY-----GI------QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYAN 123 (432) T ss_pred HHHHHHHHHHhhccCceEEEEecCC-----ce------eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEE Confidence 9999999999987665554322110 00 0011112222232222222233444444444 4568888888 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c--eEEchhhEEEecCC Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHTIVSR 279 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~--~~iH~SRli~~~~~ 279 (695) +.-+ ..|.+.+|.++++.+|++...+ +.. ..++...+|.+. | +.++++.||||... T Consensus 124 i~r~-----------------~~G~~~~L~~i~~~~v~v~~d~--~~~-~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~ 183 (432) T protein:vir:10 124 IEFD-----------------RKGKVQALWPIDASKVTVYIDD--VGL-LNSKTKMWYVVNTGGQQRVLKPEEILHFKNG 183 (432) T ss_pred EEEC-----------------CCCcEEEEEEEcCceeEEEEcC--ccc-ccccceEEEEEecCCeEEEEccccEEEecCC Confidence 6532 1245678899999888764221 111 112122234433 3 46899999999743 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHh-cCCc Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRY-RDNR 356 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~-~~n~ 356 (695) . +...+.|.|.++.+.+.|.....+......++...... +++++ ..++.+..+.+.++++..... .+.. T Consensus 184 ~------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~n~~ 255 (432) T protein:vir:10 184 I------TLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYV--GDLNEDAKKVFRENFESMSSGLQNSH 255 (432) T ss_pred C------CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcC--CCCCHHHHHHHHHHHHHHhcccccCC Confidence 2 23456799999999999999998888888877764433 34444 346555556666666554433 3344 Q ss_pred eeEEEEcCCceeEEEecccCCh--HHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLSGL--DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~lsgl--~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~ 434 (695) ++++++. +-+|+.++.+..+. -+......++||.+.+||..+| |...+|-.++.|.....||.. -|.|. T Consensus 256 ~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~~s~~e~~~~~~~~~-------~l~P~ 326 (432) T protein:vir:10 256 RIALMPV-GYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQL-NDLSKATLNNIEQQQQQFYTD-------TLQAT 326 (432) T ss_pred cceecCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCCCcccHHHHHHHHHHH-------HHHHH Confidence 5677764 67899988776544 3666777899999999999998 433344445556566667644 47888 Q ss_pred HHHHHHHHHHHhcCC--CCCceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 435 MNDVIVMIQLSLFGA--VDPSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 435 l~~l~~~l~~s~~g~--~~~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) +..+-+.+-+..+.. ...++.|+ +..|...+.++++ ++..+++..|+++++|+|..+...+..+..... T Consensus 327 ~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~-------~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~ 399 (432) T protein:vir:10 327 LTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRY-------EAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLL 399 (432) T ss_pred HHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEe Confidence 877776665444322 23344444 5577777777764 466778889999999999887654432211110 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccc Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATA 552 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695) ..... ............+....... .. ...... T Consensus 400 ~~~n~-------~~~~~~~~~~~k~~~~~~~~-~~-~~~~~~ 432 (432) T protein:vir:10 400 VNGNM-------LPIDMAGQAYLKGGDTNGEV-SK-EGNEGN 432 (432) T ss_pred ecccc-------cchhhccccccCCCCCCCCC-CC-CCCCCC Confidence 00000 00000000000000000000 00 000000 No 22 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=99.63 E-value=9.5e-16 Score=102.93 Aligned_cols=417 Identities=10% Similarity=0.020 Sum_probs=212.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCch-HHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGF-PTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy-~~~a~~~~~~~ 124 (695) |.=..++...-.....+.+++.. .+........|...+ -.|. -......+++. T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~-------------------------~~~~~~~~~~~~g~~-~~~~~v~~~~al~~~~ 54 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIE-------------------------LNKDDEKLLEWLGIS-PSTISVKGKNALKVAT 54 (432) T ss_pred CChHHHHHHhcCccccCcccccc-------------------------cCCchHHHHHHhCCC-cCccccchhhhhccHH Confidence 22222111000000000000000 000001111222111 1111 11123456788 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~ 203 (695) +.++|++.|+++-.--+++.....+ |. ....+......|...=....-+..|.+.+.+ --++|-++++ T Consensus 55 v~~~i~~ia~~ia~lp~~~~~~~~~-----~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~ 123 (432) T protein:vir:10 55 VFACIKILSESVSKLPLKIYQEDEY-----GI------QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYAN 123 (432) T ss_pred HHHHHHHHHHhhccCceEEEEecCC-----ce------eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEE Confidence 9999999999987665554322110 00 0011112222232222222233444444444 4568888888 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c--eEEchhhEEEecCC Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHTIVSR 279 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~--~~iH~SRli~~~~~ 279 (695) +.-+ ..|.+.+|.++++.+|++...+ +.. ..++...+|.+. | +.++++.||||... T Consensus 124 i~r~-----------------~~G~~~~L~~i~~~~v~v~~d~--~~~-~~~~~~~~y~~~~~g~~~~~~~~eiih~r~~ 183 (432) T protein:vir:10 124 IEFD-----------------RKGKVQALWPIDASKVTVYIDD--VGL-LNSKTKMWYVVNTGGQQRVLKPEEILHFKNG 183 (432) T ss_pred EEEC-----------------CCCcEEEEEEEcCceeEEEEcC--ccc-ccccceEEEEEecCCeEEEEccccEEEecCC Confidence 6532 1245678899999888764221 111 112122234433 3 46899999999743 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHh-cCCc Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRY-RDNR 356 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~-~~n~ 356 (695) . +...+.|.|.++.+.+.|.....+......++...... +++++ ..++.+..+.+.++++..... .+.. T Consensus 184 ~------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~n~~ 255 (432) T protein:vir:10 184 I------TLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYV--GDLNEDAKKVFRENFESMSSGLQNSH 255 (432) T ss_pred C------CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcC--CCCCHHHHHHHHHHHHHHhcccccCC Confidence 2 23456799999999999999998888888877764433 34444 346555556666666554433 3344 Q ss_pred eeEEEEcCCceeEEEecccCCh--HHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLSGL--DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~lsgl--~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~ 434 (695) ++++++. +-+|+.++.+..+. -+......++||.+.+||..+| |...+|-.++.|.....||.. -|.|. T Consensus 256 ~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~l-g~~~~~~~s~~e~~~~~~~~~-------~l~P~ 326 (432) T protein:vir:10 256 RIALMPV-GYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQL-NDLSKATLNNIEQQQQQFYTD-------TLQAT 326 (432) T ss_pred cceecCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCCCcccHHHHHHHHHHH-------HHHHH Confidence 5677764 67899988776544 3666777899999999999998 433344445556566667644 47888 Q ss_pred HHHHHHHHHHHhcCC--CCCceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 435 MNDVIVMIQLSLFGA--VDPSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 435 l~~l~~~l~~s~~g~--~~~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) +..+-+.+-+..+.. ...++.|+ +..|...+.++++ ++..+++..|+++++|+|..+...+..+..... T Consensus 327 ~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~-------~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~ 399 (432) T protein:vir:10 327 LTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRY-------EAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLL 399 (432) T ss_pred HHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEe Confidence 877776665444322 23344444 5577777777764 466778889999999999887654432211110 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccc Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATA 552 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695) ..... ............+....... .. ...... T Consensus 400 ~~~n~-------~~~~~~~~~~~k~~~~~~~~-~~-~~~~~~ 432 (432) T protein:vir:10 400 VNGNM-------LPIDMAGQAYLKGGDTNGEV-SK-EGNEGN 432 (432) T ss_pred ecccc-------cchhhccccccCCCCCCCCC-CC-CCCCCC Confidence 00000 00000000000000000000 00 000000 No 23 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=99.58 E-value=2.1e-15 Score=101.07 Aligned_cols=402 Identities=12% Similarity=0.022 Sum_probs=200.2 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.--.++-... ....+. ....+.+. ....|......++ .....+++.+ T Consensus 1 Mgl~~~~f~~~-----~~~~~~--------~~~~~~~~----------------~~~~~~~~g~~v~---~~~al~~~~v 48 (409) T protein:vir:84 1 MSLFTRIFSGP-----SEERTL--------TKISGIPS----------------PAEDWAMHGDRPG---ANSAMTLGAF 48 (409) T ss_pred CchhhhhhcCC-----Cccccc--------cccccccc----------------ccchhhccCcccc---hhhhhccHHH Confidence 33322110000 000000 00000000 0011211111111 1222356778 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~i 204 (695) .++|+++|+++-.-=+++...... ....+......|...=...--+..|.+++. +.-++|-++++| T Consensus 49 ~~~v~~ia~~iA~lp~~~~~~~~~-------------~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i 115 (409) T protein:vir:84 49 YACVTLLADTVASLSIDAYRKKDN-------------VRIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYI 115 (409) T ss_pred HHHHHHHHHhhhhCceEEEEecCC-------------cccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEE Confidence 999999999976543333211000 000011122222222222333445555555 444688888887 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhh Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDM 284 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~ 284 (695) ...+. .|.+.+|.++++.++++.... |... .+ .-..|.+.|+.++++.|||+...... T Consensus 116 ~~~~~----------------~g~~~~L~~l~p~~v~v~~~~--~~~~-~~-~~~~~~~~g~~~~~~dvih~~~~~~~-- 173 (409) T protein:vir:84 116 SARDE----------------ANRPTAIMPIHPDCIHVTDAK--DEDG-DW-IEPVYRIDGKVVPNHRIMHIKRYPVA-- 173 (409) T ss_pred EEECC----------------CCceEEEEEEcCceeEEEEcC--CCcc-eE-EEEEecCCceEEchhhEEEecCCCCC-- Confidence 65321 245677889998887654332 2222 11 11245678899999999999875432 Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEE Q lcl|Aclame:pro 285 LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLD 362 (695) Q Consensus 285 ~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld 362 (695) ..+.|.|-++.+.+.|.....+......++..... .+++++ ..++.+..+.+.+++. ....+..+.++++ T Consensus 174 ----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~l~~e~~~~~~~~~~--~~~~n~g~~~vl~ 245 (409) T protein:vir:84 174 ----GCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSD--ADLTPDQVKQTQKQWI--QSHHNRRLPAVMS 245 (409) T ss_pred ----cccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecC--CCCCHHHHHHHHHHHH--HHhccCCCeeecC Confidence 23579999999999999888888888877665443 333443 2344444344444332 2233334456666 Q ss_pred cCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcc-ccc-CcchHHHHHHHHHHHHHHhhhhhHHHHHH Q lcl|Aclame:pro 363 KATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPT-GLN-ASSEGEIRVWYDYVRAYQRNALQQLMNDV 438 (695) Q Consensus 363 ~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~-Gln-atge~D~~nyyd~i~~~Qe~~l~p~l~~l 438 (695) ++.+|+.++.+.. .+-+......+.||.+.+||..+| |.... ... +.-|....+||..+ |.|.+..+ T Consensus 246 -~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~sn~e~~~~~f~~~~-------l~P~~~~i 316 (409) T protein:vir:84 246 -AGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMI-GDVEKSTSWGTGIEEQGINFVRHT-------LLPWLRCI 316 (409) T ss_pred -CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCcccccchHHHHHHHHHHHH-------HHHHHHHH Confidence 4778999887654 344555677889999999998866 54322 221 22243445666433 67777666 Q ss_pred HHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 439 IVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGV 518 (695) Q Consensus 439 ~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~ 518 (695) -+.+-+. +. ....+.|.++.|...+.+++ +++..+++..|+++.+|+|+.+...+..+............. T Consensus 317 e~~l~~~-L~-~g~~i~fd~~~l~~~d~~~~-------~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~n~~~~ 387 (409) T protein:vir:84 317 EQALDTF-LP-RGQFVKFNVDGLMRGDVTAR-------FTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPMNFVPL 387 (409) T ss_pred HHHHHHh-cc-CCCeEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccc Confidence 5544322 21 11234566667777766665 456777888999999999998766554331111000000000 Q ss_pred hhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhh Q lcl|Aclame:pro 519 PADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (695) ... .... .. ...... ....... T Consensus 388 ~~~---~~~~------~~----~~~~~~-------~~~~gn~ 409 (409) T protein:vir:84 388 GYV---PPEE------PA----QEPQPN-------SATEGNK 409 (409) T ss_pred ccC---Cccc------cC----cCCCCC-------CccCCCC Confidence 000 0000 00 000000 0000000 No 24 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=99.58 E-value=3.1e-15 Score=100.13 Aligned_cols=398 Identities=14% Similarity=0.064 Sum_probs=204.2 Q ss_pred hhhcccc-cccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHH-HHHHHhCh Q lcl|Aclame:pro 46 MGRRGAL-NALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPT-LVLLAQLP 123 (695) Q Consensus 46 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~-~a~~~~~~ 123 (695) |.-..+. ......+...+....+ .++.. ...+.|... -..+.+++ T Consensus 1 Mg~f~~lf~r~~~~~~~~~~~~~~--------------------~~~~~-------------~~~~~g~~v~~~~al~~~ 47 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTPAELAD--------------------AIGLS-------------YDTYTGKQISSQRAMRLT 47 (414) T ss_pred CchhhhhhccCccCcccchhhHhH--------------------hhccC-------------ccccCCceechhhhhccH Confidence 2221110 0000000000000000 00000 001111100 11233577 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHP 202 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i 202 (695) -+.++|+++|+++-.--+++.....+ + .....+......|...=....-...|.+.+.+. -++|.+++ T Consensus 48 ~v~~~i~~Ia~~ia~~p~~~~~~~~~-----~------~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~ 116 (414) T protein:vir:44 48 AVFSCVRVLAESVGMLPCNLYHLNGS-----L------KQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYA 116 (414) T ss_pred HHHHHHHHHHHHhccCceEEEEecCC-----c------eeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEE Confidence 88999999999987655444221110 0 000111222233333333344455566655554 45788877 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc---c--eEEchhhEEEec Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---G--TEVHATRLHTIV 277 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---~--~~iH~SRli~~~ 277 (695) ++. .++ |.+..|.++++.++++.... .+.+ .|.+. | ..++++.||+|. T Consensus 117 ~i~-~~~-----------------g~~~~L~~l~~~~v~~~~~~--------~~~~-~y~~~~~~g~~~~~~~~evih~~ 169 (414) T protein:vir:44 117 YKV-KAF-----------------GEVAELLPVDPGCVVPKLNS--------SWEP-VYQVTFPDGSTDVLSQEDIWHVR 169 (414) T ss_pred EEE-eCC-----------------CcEEEEEEEcCceEEEEECC--------CCcE-EEEEEecCceEEEEccccEEEec Confidence 653 211 23557888888888653211 2233 33332 2 468999999998 Q ss_pred CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 278 SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDN 355 (695) Q Consensus 278 ~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n 355 (695) +..+ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.++++.....-+| T Consensus 170 ~~~~-------d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~n 240 (414) T protein:vir:44 170 TLTL-------DGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTE--QTLSDQAYERLKKDFEERHTGLGN 240 (414) T ss_pred CCCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeC--CCCCHHHHHHHHHHHHHHhcCccc Confidence 6532 23579999999999998888888777777766443 344544 345555556666666544333334 Q ss_pred c-eeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 356 R-NILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 356 ~-~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~ 432 (695) . ++++++ ++.+|+.++.+..+ +-+......+.||.+.+||..+|-+ ..++-.++.|...++||..+ |. T Consensus 241 ~~~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~-~~~~t~~n~e~~~~~~~~~~-------l~ 311 (414) T protein:vir:44 241 AHRPMILE-MGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQN-TDRATFNNIEELGLGFINYS-------LV 311 (414) T ss_pred cCcceecC-CCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCCCcccHHHHHHHHHHHH-------HH Confidence 3 456676 46789998876554 4455667778999999999998844 32333345565667777543 78 Q ss_pred HHHHHHHHHHHHHhcCCCC-Cce--eEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLSLFGAVD-PSI--KWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 433 p~l~~l~~~l~~s~~g~~~-~d~--~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) |.++.+-+.+-+..+.... ..+ .|.+..|...+.+++ ++...+++..|+++++|+|..+...+..+.... T Consensus 312 P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ll~~d~~~~-------~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~ 384 (414) T protein:vir:44 312 PYLTRIEQRINTGLVRKSKQGVFYAKFNAGALLRGDMKSR-------FEAYATGINWGIYSPNDCRDLEDMNPRPGGDVY 384 (414) T ss_pred HHHHHHHHHHHhhcCCccccCceEEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee Confidence 8888776666554443222 233 444556666666665 456677888999999999988765443221110 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhh Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVA 557 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (695) ......... ..... .... . ........... T Consensus 385 ~~~~n~~~~-----~~~~~--------~~~~-~----~~~~~~d~~~~ 414 (414) T protein:vir:44 385 LTPMNMTTK-----PSDGS--------KAGK-Q----KDNANADETTS 414 (414) T ss_pred ccccccccc-----CCccc--------cCCC-C----CCCCCCCCCCC Confidence 000000000 00000 0000 0 00000000000 No 25 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=99.57 E-value=2.2e-15 Score=100.92 Aligned_cols=572 Identities=10% Similarity=-0.000 Sum_probs=235.4 Q ss_pred hhhcc---------cccccccccccccc---hhhhhhhcccccCCCCcccccccccccccccccchhhh----hhhccCC Q lcl|Aclame:pro 46 MGRRG---------ALNALDAAPVAEPS---PSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL----SFVTSSG 109 (695) Q Consensus 46 ~~~~~---------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 109 (695) |.|+- +.-.++.....+|+ .+++.-..|.+.++++........ .+-+....+.+. +.+.... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--d~~~~~~~r~g~~~~~~~~g~~~ 78 (648) T protein:vir:79 1 MARKVWGRGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKR--DPKMSLVKRIGLAIMDGGGGGRD 78 (648) T ss_pred CccchhcchhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccc--cchhHHHHHhHHHHHhhcCCccc Confidence 22221 00011111111221 111111222222211111100000 000111111111 1111111 Q ss_pred C----CchHHH-HHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHH-HHHHHHhhch Q lcl|Aclame:pro 110 F----PGFPTL-VLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQ-INDEIERLRI 183 (695) Q Consensus 110 f----~gy~~~-a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~-i~~~~~~l~~ 183 (695) | ..|..+ .+|..++.++++|++.++++....+.+...... ..+...... +......... T Consensus 79 ~~epp~d~~~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~---------------~~~~~~~~~ll~rPn~~~t~ 143 (648) T protein:vir:79 79 FEEPEFDFNEITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPN---------------AVEYIRMRFTLMAEATQIPT 143 (648) T ss_pred cccCCcCHHHHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCc---------------cchhhHHHHHhhccCCCCCH Confidence 2 123444 445579999999999999999987766432110 001101100 1111111122 Q ss_pred HHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCcc-ccccCcceEEEEEecchhccccceecccccccccCCceeEE Q lcl|Aclame:pro 184 RDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRP-YTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW 262 (695) Q Consensus 184 ~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~-~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~ 262 (695) .+-+...+..--+||-+++.+.-++++.. |+.+.+ .......++++.++++..+++.. | +||.+..|. T Consensus 144 ~~f~~~l~~~lll~GNAYveiiRd~~G~~---~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~----d----~~g~~~~Y~ 212 (648) T protein:vir:79 144 NQLFIEIAEDLVKYCNVVIAKSRAKDALP---FQGMNVMGVGDSMPVAGYFPLNLASMKVKR----D----KFGMIKGWQ 212 (648) T ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCCcc---chhhhhhhhccccceeeeEeecCceeEEEE----c----CCCceeeeE Confidence 23333344444579999988876555421 221110 01112245677777776665321 2 577887776 Q ss_pred Ec--c----eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhh Q lcl|Aclame:pro 263 MI--G----TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQAL 334 (695) Q Consensus 263 i~--~----~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l 334 (695) +. | ..++++.||||..... ...+.|.|.++.+.+.|.....+....+.++..... .++++...... T Consensus 213 y~~~g~~~~~~~~~~dIIHik~~~~------~d~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~ 286 (648) T protein:vir:79 213 QEQEGQDKPQKFKPEDIVHIYYKRE------KGRAFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEG 286 (648) T ss_pred EEecCCceeEEecCccEEEEccCCC------CCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCccc Confidence 53 2 3467899999975432 234579999999999999888888888887776554 33443321111 Q ss_pred cchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCC------hHHHHHHHHHHHHhhhcCCceeeeccCcccc Q lcl|Aclame:pro 335 MPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSG------LDALQAQAQEQMSAVSHIPLIKLLGITPTGL 408 (695) Q Consensus 335 ~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsg------l~~~~~~~~~~iaaas~iP~t~L~G~sp~Gl 408 (695) .+ ...+..+.+...- +++.+. +..-+++.++.+..+ +.+......++||++.+||-.+| |...++- T Consensus 287 -~e---~~k~~~e~~~~~~--~~~~i~-gg~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP~lL-G~~~~ss 358 (648) T protein:vir:79 287 -FG---AEEGEVDLVRGEV--ENMDVE-GGMVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSELMM-GRGGTAS 358 (648) T ss_pred -hH---HHHHHHHHHHHhc--cccccc-ccccccceeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCHhHc-ccCCCcc Confidence 11 1112222222211 122233 223345555554322 23344666789999999998766 8765555 Q ss_pred cCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHh---cCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhh Q lcl|Aclame:pro 409 NASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQ-LSL---FGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV 484 (695) Q Consensus 409 natge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~-~s~---~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~ 484 (695) .++++....+|++.|...|....+..-..+...+. ... +...+..+.|.|++|...+.+.+++ ....++ T Consensus 359 ~stae~~~~~~~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~-------~~~~l~ 431 (648) T protein:vir:79 359 RSTGDNLSSDFKDRIKALQKVMATFINEFMVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLEN-------QAVFLY 431 (648) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccceEEEeecccchhhHHHHHH-------HHHHHH Confidence 56777778899999998886654444333333222 122 2223345778888888777666544 344577 Q ss_pred hhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccc Q lcl|Aclame:pro 485 QEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVK 564 (695) Q Consensus 485 ~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (695) .+|+++.+|+|..+...+............. ............ ..................... . ....... T Consensus 432 ~~GilT~NEaR~~lGlpPi~~g~~~~~l~~~---~~~~~~~~~~~~--~~~~~~~~~~~~a~~eg~~~e--~-~~~~~~~ 503 (648) T protein:vir:79 432 EHNAISEDEMRELIGRDPVDDGEGRAKMHLQ---MVTIAQATALAA--LAPTPAGGSSASASGDKKKKA--T-DNKTKPT 503 (648) T ss_pred hCCCcCHHHHHHHhCCCCCCCCCCccccccc---cccchhcccccc--CCCCCCCCCCCCccccccccc--c-CCCCCCC Confidence 8899999999988766554322211000000 000000000000 000000000000000000000 0 0000000 Q ss_pred cccccccCceEEEEEEEEEcCCeEEEEEeC-CCcee--CCcceeCC----------CCCHHHHHHHHHHHhcCceEeEEE Q lcl|Aclame:pro 565 PREAGAQDAAMRAAGAVYVVDGKVLLMKRP-AGDWG--LPAGKVEG----------NETPEEAARRETREETGYDHDGEL 631 (695) Q Consensus 565 ~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~-~g~W~--lPGG~vE~----------gEs~~~aa~REv~EEtGl~v~~~~ 631 (695) .......++ -+.. .-+|. ++- ..|. -+.-.+...-|+.++.+=.+.... T Consensus 504 ~~~g~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (648) T protein:vir:79 504 NQHGTKTSP-----------------KKQTNGRHVRYMQEM-LLEYTTLNEAIKALIERYYQYGSKEHLKSINGSLMYTE 565 (648) T ss_pred CCCCcCCCC-----------------ccccchhhhhhhhhh-hhcchhhhHHHhhHHHHHHHHhHHHHHHhhhhhheecc Confidence 000000000 0010 01121 110 1111 111122222333333332222110 Q ss_pred EecCcccEEEEEEEEEeeCCccccC-ch----hhhhccCCHHHHhhh--cCcchHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 632 VPLGKFDGFFHAFVAHLEPFDVELN-DE----HTAFDWFNPDELPHP--LHRDTAAIVDAACKALDRLERA 695 (695) Q Consensus 632 ~~~~~~~~~~~~f~~~~~~~~~~~~-~E----~~~~~W~~~~el~~~--l~~~~~~~i~~~~~~l~~~~~~ 695 (695) +.+...+.-|.++-+...+.++ ++ ..++---.++.+... +..-...+.+.+-.+|.++-.- T Consensus 566 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (648) T protein:vir:79 566 ---GRLLELTTQYWGEEVTEKVRIPFHRMTENLREEVMSTIDKVEGVAEASDIAQAVFDVFTDRLGHISNE 633 (648) T ss_pred ---chhHHHHHHHhhhhhhceeeeeHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhh Confidence 1110000000111111122221 11 112222223322211 1111122334444444443221 No 26 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=99.55 E-value=3.7e-15 Score=99.70 Aligned_cols=369 Identities=11% Similarity=0.002 Sum_probs=193.6 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCc-hHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG-FPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g-y~~~a~~~~~~~ 124 (695) |.=-+.....+..+. . ... +.+....+...+ +..+ |-....+.+++. T Consensus 1 Mg~~~~~~~~k~~~~----~-------------~~~--------------~~~~~~~~~~~~-~~~~~~v~~~~~l~~~~ 48 (383) T protein:vir:10 1 MGLLTPKNFSKRNAK----N-------------MVY--------------PSNPAFFTTTVG-GMQLSYVSALSALQNTN 48 (383) T ss_pred CCccccccccccccc----c-------------ccc--------------ccchhhhhhhcc-CccccccchhHhhcchH Confidence 222211111100000 0 000 000000000000 0000 111123346788 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~ 203 (695) +.++|+++|+++-.--+++....... .++ .-..+.-+..|.+.+. +.-|+|-++++ T Consensus 49 v~~~i~~ia~~ia~~~~~~~~~~~~~----------------------ll~-~PN~~~t~~~f~~~~~~~l~l~Gn~~~~ 105 (383) T protein:vir:10 49 VYSVINRIASDVSSAHFKTENTATLN----------------------RLE-SPSSLIGRFSFWQGALMQLCLSGNDYIP 105 (383) T ss_pred HHHHHHHHHHhhccCceeecccchhh----------------------hhh-CCCCCCCHHHHHHHHHHHhhhcCCeEEE Confidence 89999999999887655553221111 111 1112223334444443 33458888877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE--c----ceEEchhhEEEec Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--I----GTEVHATRLHTIV 277 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i--~----~~~iH~SRli~~~ 277 (695) +. ++. .++.+.++.++.+.. |.. ..+|.+ . .+.+.++.||||. T Consensus 106 i~--~~~-------------------~~~~p~~~~~v~~~~----~~~------~~~~~~~~~~~~~~~~~~~~evih~r 154 (383) T protein:vir:10 106 LV--GQN-------------------LEHIPNSDVQINYLP----GNM------GIVYTVLESNDRPKMVLRQDQMLHFR 154 (383) T ss_pred EE--cCc-------------------eeEeecCcceEEEEE----cCC------ceEEEEEEcCCceEEEEcccceEEec Confidence 53 221 124455555443321 110 122222 1 2568899999987 Q ss_pred CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhc-chHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 278 SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALM-PGANVDLSMRAELINRYRD 354 (695) Q Consensus 278 ~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~-~~~~~~l~~r~~~~~~~~~ 354 (695) ....+ . .....|.|.++.+.+.|.....+......++...... +++++ ..+. .+..+.+.++++......+ T Consensus 155 ~~~~~-~---~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~--~~~~~~e~~~~~~~~~~~~~~~~n 228 (383) T protein:vir:10 155 LMPDP-Q---YRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTIS--NYLSDGKDLESAREEFEKANTGDN 228 (383) T ss_pred cCCCC-c---ccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC--CCCCCHHHHHHHHHHHHHHhCccc Confidence 54321 1 1234699999999999999999999888887766543 44443 2333 3334455555554443333 Q ss_pred CceeEEEEcCCceeEEEecccCChH---HHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 355 NRNILFLDKATEEFFQFNTPLSGLD---ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNAL 431 (695) Q Consensus 355 n~~~~~ld~~~e~~~~~~~~lsgl~---~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l 431 (695) ..++++++ ++.+|+.++.+....+ +......++||++.+||-.+|-+...++.+.+.-+..+.+|.. -| T Consensus 229 ~~~~~vl~-~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~~-------~l 300 (383) T protein:vir:10 229 SGRLMVLP-DGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLA-------NL 300 (383) T ss_pred cCCccccC-CCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHHHH-------HH Confidence 34467776 4788999988776654 4456668899999999999886544333333332233333321 27 Q ss_pred hHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 432 QQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 432 ~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) +|.+..+-+.+-+..++ +++.|.+.++...+.+++ +++..+++..|+++.+|+|+.+...+..+...... T Consensus 301 ~P~~~~ie~~l~~~l~~---~~~~f~~~~l~~~d~~~~-------~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~ 370 (383) T protein:vir:10 301 NSYVNPIVDELRLKMNA---PDLELDIKDMLDVDDSIL-------INQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF 370 (383) T ss_pred HHHHHHHHHHHHHhhCC---ceEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCcccCCccccc Confidence 78887776665544433 468888889888888876 44567778899999999999876544322211000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhc Q lcl|Aclame:pro 512 ANDDPGVPADDDIDGVLTYVQRLAEGG 538 (695) Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (695) .... .... -+... T Consensus 371 ~~~~-~~~~-------------gGd~e 383 (383) T protein:vir:10 371 KPLT-NETK-------------GGDDK 383 (383) T ss_pred CCCc-ccCC-------------CCCCC Confidence 0000 0000 00000 No 27 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=99.55 E-value=1.3e-14 Score=96.67 Aligned_cols=394 Identities=13% Similarity=0.085 Sum_probs=206.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.=..+.... |..+ +....+ .......|..... +.. ....+++-+ T Consensus 1 MG~~~~~~~~-----------------~~~~----------~~~~~~----~~~~~~~~~g~~~---~~~-~~al~~~~V 45 (411) T protein:vir:81 1 MGWWSRLTRF-----------------FRPR----------NETVDM----TNPLLLQWLGVDP---DTP-RNQLSEATY 45 (411) T ss_pred CchHHHHHhh-----------------ccCc----------cccccc----chHHHHHHhcCcc---cCh-hhhhccHHH Confidence 2221111000 0000 000000 0000011111111 111 111246778 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~i 204 (695) .++|+++|+++-.--+++.-...+ |. ....+......|..+=...--+..|.+.+.+ --++|.+++++ T Consensus 46 ~~~v~~Ia~~iA~lp~~~~~~~~~-----~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i 114 (411) T protein:vir:81 46 FACLKILSESLGKLPLKMYQKTER-----GI------VKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWC 114 (411) T ss_pred HHHHHHHHHhHhhCceeEEEecCC-----ce------eeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEE Confidence 899999999986654443211110 00 0011112222232222223334455555544 45688888876 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE----cce--EEchhhEEEecC Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM----IGT--EVHATRLHTIVS 278 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i----~~~--~iH~SRli~~~~ 278 (695) .-+ + |.+..|.++.+..+++...+ +..-. .....+|.+ .|+ .++++.||||.. T Consensus 115 ~r~--~----------------g~~~~l~~l~~~~v~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~~~~eiih~k~ 173 (411) T protein:vir:81 115 QYS--G----------------PQLQALWILPSQYVTIVVDD--RGLLG-EKNAIWYRYNDPYDGKMYVFRNDEILHFKT 173 (411) T ss_pred Eec--C----------------CceEEEEEECCceEEEEEcC--ccccc-ccceEEEEEEecCCceEEEEccccEEEEcC Confidence 532 1 23456888888888775322 11110 111123333 233 579999999975 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRDNR 356 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~ 356 (695) ... ...+.|.|.++.+.+.+.....+......++...... +++++ ..++.+..+.+.++++.....-+|. T Consensus 174 ~~~------~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~n~ 245 (411) T protein:vir:81 174 SVT------FDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYT--GDLNQEARDRLVKGFEQFANGSKNA 245 (411) T ss_pred CCC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeC--CCCCHHHHHHHHHHHHHHhcCcccc Confidence 322 2346799999999999999999988888877665443 34443 4466555566767666554443343 Q ss_pred -eeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhH Q lcl|Aclame:pro 357 -NILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQ 433 (695) Q Consensus 357 -~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p 433 (695) ++++++ ++-+|+.++.+.. .+-+......++||++.+||..+| |...+|-.++.|....+||.. -|.| T Consensus 246 g~~~vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~n~e~~~~~f~~~-------~l~P 316 (411) T protein:vir:81 246 GKIIPVP-LGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQI-NDYEKSSYASAEAQNLAFYVD-------TLLY 316 (411) T ss_pred CCceecC-CCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCCCchhHHHHHHHHHHH-------HHHH Confidence 456666 4678999886654 344666788899999999998877 655555445556555666644 4788 Q ss_pred HHHHHHHHHHHHhcCC--CCCce--eEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 434 LMNDVIVMIQLSLFGA--VDPSI--KWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 434 ~l~~l~~~l~~s~~g~--~~~d~--~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) .+..+-+-+-+..+.. ...+. .|.+..|...+.+++ +++..+++..|+++++|+|+.+...+..+.... T Consensus 317 ~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~-------~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~ 389 (411) T protein:vir:81 317 VLKQYEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQ-------MDSLSTAVQNGIMTPNEARDYLDMPADDYGNNL 389 (411) T ss_pred HHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCee Confidence 8888777665544422 23344 455555556666655 556777888999999999988765443221110 Q ss_pred hhhhhhhhhhhhhhhhhh-hhhhhhhhhh Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGV-LTYVQRLAEG 537 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 537 (695) ..... ...... ......-+.. T Consensus 390 ~~~~n-------~~pl~~~~~~~~kgGd~ 411 (411) T protein:vir:81 390 MANGN-------YIPLSMLGANYGKGGDS 411 (411) T ss_pred eeccC-------ccchhhhhhhhccCCCC Confidence 00000 000000 0000000000 No 28 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=99.55 E-value=8.6e-15 Score=97.70 Aligned_cols=398 Identities=14% Similarity=0.068 Sum_probs=208.6 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.-.+-|......+...+......+ +.+... ..+ . .+ ....+.+++-+ T Consensus 1 ~~f~~~f~r~~~~~~~~~~~~~~~~-------~~~~~~-~~g---------~--------------~v-~~~~~l~~~~v 48 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTTPAELAEAI-------GLSYDT-YTG---------K--------------RI-SSQRAMRLTAV 48 (413) T ss_pred CccchhhccCccCCccchHHHHHhh-------hcCccc-ccC---------c--------------ee-chhhhhccHHH Confidence 6655554443322222221111110 000000 000 0 00 01223356778 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCcccccccccc-CCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAAST-SDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPY 203 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~ 203 (695) .++|+++|+++-.--+++.....+ .... .+......|...=...--+..|.+.+. +--++|-++++ T Consensus 49 ~~~i~~Ia~~iA~~p~~~~~~~~~------------~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~ 116 (413) T protein:vir:48 49 YSCVRVLAESVGMLPCSLYKISGT------------LKTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAY 116 (413) T ss_pred HHHHHHHHHhhhhCceEEEEecCC------------cceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEE Confidence 899999999987654444322110 0011 111222222222222233334444444 44467888777 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE---cc--eEEchhhEEEecC Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM---IG--TEVHATRLHTIVS 278 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i---~~--~~iH~SRli~~~~ 278 (695) +. .+ .|.+..|.++++.++++... .. +.+ .|.+ .| ..++++.||+|.. T Consensus 117 i~-~~-----------------~g~~~~L~~l~~~~v~~~~~----~~----~~~-~y~~~~~~g~~~~~~~~evih~~~ 169 (413) T protein:vir:48 117 KV-KA-----------------LGEVVELLPIDPGCVEPKLN----SQ----WQP-VYQVTFPDGSVDVLTQDEIWHVRT 169 (413) T ss_pred EE-eC-----------------CCcEEEEEEEcCceEEEEEc----CC----ceE-EEEEEecCceEEEEccccEEEecC Confidence 53 21 13456788899888876321 11 222 2333 23 4689999999986 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNR 356 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~ 356 (695) ..+ ....|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.+.++......+|. T Consensus 170 ~~~-------d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~--~~~~~e~~~~~~~~~~~~~~g~~n~ 240 (413) T protein:vir:48 170 LTL-------DGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTE--QKLTPDAYERLKKDFEERHTGLGNA 240 (413) T ss_pred cCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC--CCCCHHHHHHHHHHHHHHhcCcccc Confidence 542 23579999999999999888888888887776554 344444 3455555556666665444433444 Q ss_pred -eeEEEEcCCceeEEEecccCCh--HHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhH Q lcl|Aclame:pro 357 -NILFLDKATEEFFQFNTPLSGL--DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQ 433 (695) Q Consensus 357 -~~~~ld~~~e~~~~~~~~lsgl--~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p 433 (695) +.++++ ++.+|+.++.+..+. -+........||.+.+||..+|-+ ..++-.++.|....+||.. -|.| T Consensus 241 g~~~vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~~t~~n~e~~~~~f~~~-------~i~P 311 (413) T protein:vir:48 241 HRPMILE-MGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQN-TDRATFNNIEELGLGFINY-------SLVP 311 (413) T ss_pred CcceecC-CCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CcCCCcccHHHHHHHHHHH-------HHHH Confidence 456666 467899988776544 467778888999999999999854 3333335556566777754 3778 Q ss_pred HHHHHHHHHHHHhcCCCC-Cc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 434 LMNDVIVMIQLSLFGAVD-PS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 434 ~l~~l~~~l~~s~~g~~~-~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) .++.+-+.+-+..+.... .+ +.|.+..|...+.+++ +++..+++..|+++++|+|..+...+..+..... T Consensus 312 ~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~d~~~~-------~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~~ 384 (413) T protein:vir:48 312 YLTRIEQRINTGLVRESKQGKFYAKFNAGALLRGDMKSR-------FEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYL 384 (413) T ss_pred HHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceee Confidence 888776665544332111 13 4455556666666665 4566778899999999999887655443211110 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhh Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (695) ........... .... ..... ........ . T Consensus 385 ~~~n~~~~~~~-----~~~~----~~~~~-----~~~~~~~~-------~ 413 (413) T protein:vir:48 385 TPMNMTTSPSA-----GDDN----GKKKE-----SGDADKTA-------S 413 (413) T ss_pred ccccccccccc-----cccC----CCCCC-----CCCccccC-------C Confidence 00000000000 0000 00000 00000000 0 No 29 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=99.54 E-value=9.7e-15 Score=97.41 Aligned_cols=401 Identities=12% Similarity=0.067 Sum_probs=201.8 Q ss_pred ccchhhcccc---cccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHH Q lcl|Aclame:pro 43 PADMGRRGAL---NALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLL 119 (695) Q Consensus 43 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~ 119 (695) -+-|+..-+- +-...+ .++.. ...+ ..... .+...... .-+|+.....-+|. .+ T Consensus 1 ~~~~~~~~~~~~m~~F~~~--~~~~~-~~~~--~~~~~------------~~~~~~~~---~~~~~~~~~~~~~~---~~ 57 (413) T protein:vir:96 1 MPGVSEIRKDKNLKFFNNK--RSPTE-ESKA--KDEIP------------KAPQVVMT---LPNFFKELISDGYT---KL 57 (413) T ss_pred CCccchhhhhhcCCccccC--CCcch-hhhh--hcccc------------cccccccc---chhhHhhhccchhH---HH Confidence 0001111000 000000 00000 0000 00000 00000000 00121111111222 34 Q ss_pred HhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-Cccc Q lcl|Aclame:pro 120 AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFG 198 (695) Q Consensus 120 ~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G 198 (695) .+++.+.++|+++|.+.-.--+++..... ......+......+...-...--+..|.+.+... -++| T Consensus 58 ~~~~~v~~cI~~ia~~ia~~~~~~~~~~~------------~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~G 125 (413) T protein:vir:96 58 SDSPEVRMAVDCIADLVSNMTIQLMQNGE------------TGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEG 125 (413) T ss_pred hhchHHHHHHHHHHHhhccCceEEEEecC------------CCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcC Confidence 56889999999999998776555532111 0011112222233322222333344555554444 4678 Q ss_pred eEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecC Q lcl|Aclame:pro 199 RAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVS 278 (695) Q Consensus 199 ~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~ 278 (695) -+++++.-+.++ +.+..|.++++..|++... ... + --.|.+.++.+.++.||||.. T Consensus 126 n~~~~i~r~~~g----------------~~~~~L~~l~~~~v~~~~~----~~~--~--~y~~~~~~~~~~~~evih~k~ 181 (413) T protein:vir:96 126 NGNAVVKPQVSG----------------DKIIGLTPISPYKVTFNVS----DDD--L--DYSITFDNKEYDPSTLLHFVL 181 (413) T ss_pred CeEEEEEEcCCC----------------CceEEEEEecCceeEEEEc----CCe--E--EEEEeecCcEEchhhEEEEec Confidence 888776643222 1345678888888765321 111 1 012344678889999999875 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNR 356 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~ 356 (695) .+-++ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.++++.......|. T Consensus 182 ~~~~~-----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~n~ 254 (413) T protein:vir:96 182 NPSIE-----RPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVD--SDSDELSDEEGRENFEEMYLKRKEA 254 (413) T ss_pred cCCCC-----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeC--CCCCHHHHHHHHHHHHHHhcCcccc Confidence 43222 34579999999999999999888888887777554 345554 3455555566666665443333343 Q ss_pred -eeEEEEcCCceeEEEe-ccc--CChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 357 -NILFLDKATEEFFQFN-TPL--SGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 357 -~~~~ld~~~e~~~~~~-~~l--sgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~ 432 (695) +.+++..+..++..+. .+. ..+-+......+.||.+-+||..+| |.. ...+....+||.. -|. T Consensus 255 g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~l-g~~-----~~~~~~~~~~~~~-------~l~ 321 (413) T protein:vir:96 255 GKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLL-GVG-----TYNKDEFNNFINT-------KIM 321 (413) T ss_pred CceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-CCC-----cchHHHHHHHHHH-------HHH Confidence 4456654445454432 232 2344566677789999999999877 421 2234344566543 388 Q ss_pred HHHHHHHHHHHHHhcCCCCCcee--EEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLSLFGAVDPSIK--WQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 433 p~l~~l~~~l~~s~~g~~~~d~~--~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) |.++.+-+.+-+..+ ++++. |.+..|...+.+++ +++...++..|+++++|+|..+...+..+.... T Consensus 322 P~~~~ie~~ln~~ll---~~~~~~~fd~~~ll~~d~~~~-------~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd~~- 390 (413) T protein:vir:96 322 SIAQVIQQTYNKLIV---EEDMYFSLNPRSLYNYSLTEM-------VSAGAQMTQLNALRRNEFRNWVGMPPDAEMDDL- 390 (413) T ss_pred HHHHHHHHHHHHhhC---CCCcEEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee- Confidence 888887777655443 23444 44556666666665 456667888999999999988776554321111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEG 537 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (695) ....................+.. T Consensus 391 ----~~~~n~~~~~~~~~~~~~~~~dt 413 (413) T protein:vir:96 391 ----LVLENYLQQKDLVNQKKLIQDET 413 (413) T ss_pred ----eecccccchhhcccccCCCCCCC Confidence 00000000000000000000000 No 30 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=99.54 E-value=1.1e-13 Score=91.56 Aligned_cols=519 Identities=11% Similarity=-0.002 Sum_probs=213.9 Q ss_pred cChhhhHHHHHHHHHhcCCCCcc--cchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccc Q lcl|Aclame:pro 21 VAKAAALAAAATIATATAAQPVP--ADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTS 98 (695) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (695) +. ++++++..+-.- +.+.. --..|...... ...-....++.. ......+.+..+....++.+.. T Consensus 1 ~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---k~~~~~~~a~~~~~~~~~~~~~-- 66 (551) T protein:vir:80 1 MK--NKLGLFESIRLV--GVNKSDAVKHIEVDDNYS-----IAIQQREQEQIS---KAMNNKEVAYSQPVIGSMSANP-- 66 (551) T ss_pred Cc--hhhhhHHHhhhc--cCChhhccccccccccee-----eecccccHHHHH---HhhccCcceeecccccceecCc-- Confidence 11 223333322210 11110 00011100000 000000001000 0000011110010000111100 Q ss_pred hhhhhhhccCCCCchHH----HHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCcccccc----ccccCCHHH Q lcl|Aclame:pro 99 MDALSFVTSSGFPGFPT----LVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGN----AASTSDGDQ 170 (695) Q Consensus 99 ~~~~~~~~~~~f~gy~~----~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~----~~~~~~~~~ 170 (695) ++..+.+...|.. +..|+.++++++||++.+++...-...+.. ..-..||.+..- .....+... T Consensus 67 ----~~~~r~~~~~~~~l~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~----~~~g~~~~i~~kd~~~~~~~~~~~~ 138 (551) T protein:vir:80 67 ----GFKTKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARH----SEKGVGFEVRLKDLDKKPTSHDEAT 138 (551) T ss_pred ----ccccCccccChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhh----hcCCCCceEEecccCcccChhHHHH Confidence 1112223333332 335667999999999999986542111000 000001111100 001122334 Q ss_pred HHHHHHHHHhhch--------HHHHHHHHH-hcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcc Q lcl|Aclame:pro 171 LKQINDEIERLRI--------RDAVRTTVI-HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVT 241 (695) Q Consensus 171 ~~~i~~~~~~l~~--------~~~~~~a~~-~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~ 241 (695) .+.++..+++.+. +..|.+.+. ..-++|.+++++.-+. .|.+.+|.++++..|+ T Consensus 139 ~~~i~~~l~~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~rd~-----------------~G~~~~L~~l~p~~V~ 201 (551) T protein:vir:80 139 IKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNR-----------------NQSMVRFVAKDPTTIF 201 (551) T ss_pred HHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEEECC-----------------CCcEEEEEEeCCceeE Confidence 4556666666553 223444444 3446788877665432 2346778899998887 Q ss_pred ccceecccccccccCCceeE-EE-cc---eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHH Q lcl|Aclame:pro 242 PNNYNSINPVADDFYKPSTW-WM-IG---TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD 316 (695) Q Consensus 242 p~~~~~~dp~s~~yg~P~~y-~i-~~---~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~ 316 (695) +... +..-....+..| ++ .| ..+.++.||+|...+.++.. ....|.|-++.+.+.|.....+...... T Consensus 202 v~~~----~~g~~~~~~~~y~~~~~g~~~~~~~~~eiiH~~~n~~~~~~---~~~~G~spi~~a~~~i~~~~a~~~~~~~ 274 (551) T protein:vir:80 202 FATT----ADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIY---ATGYGYPELEIALKQFIAHENTEAFNDR 274 (551) T ss_pred EEEC----CccccccCceEEEEEeCCcEEEEEcccceEEecccCCCCcc---cccccccHHHHHHHHHHHHHHHHHHHHH Confidence 6422 111111112223 32 22 35788899999877654432 3356999999999999988888888888 Q ss_pred HHHHhc-cc-eeeechHHhhcchHHHHHHHHHHHHHHhcCCcee-EEEEcCCceeEEEecccCC--hHHHHHHHHHHHHh Q lcl|Aclame:pro 317 IVKQFS-VS-GILMDLAQALMPGANVDLSMRAELINRYRDNRNI-LFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSA 391 (695) Q Consensus 317 l~~~~~-~~-v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~-~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaa 391 (695) ++.... .. +++++....++.+..+.+.+.++..-..-+|.|- .++..++-+|+.++.+..+ +-+......+.||. T Consensus 275 ~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~ 354 (551) T protein:vir:80 275 FFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISA 354 (551) T ss_pred HHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCccccccCCCceEEEccCChhHHHHHHHHHHHHHHHHH Confidence 776643 23 3455444445555545565555543333345554 3554334477777655443 44556667788999 Q ss_pred hhcCCceeeeccC-cccccCc-ch-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhH Q lcl|Aclame:pro 392 VSHIPLIKLLGIT-PTGLNAS-SE-GEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLE 468 (695) Q Consensus 392 as~iP~t~L~G~s-p~Glnat-ge-~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e 468 (695) +-+||-..| |.. -++..++ ++ .-..|+-+.....-+.-|.|.+.++-..|-+..+......+.|.|..+...+..+ T Consensus 355 aFgVPp~~l-G~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~f~f~~~~~~~~~~ 433 (551) T protein:vir:80 355 LYGIDPAEI-NIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFGDKYTFQFVGGDIKSELE 433 (551) T ss_pred HhcCCHHHc-CcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEeeccChhhHHH Confidence 999998877 322 1111000 00 0011111222222233477877777666655444334457889999887766666 Q ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCC Q lcl|Aclame:pro 469 VAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARA 548 (695) Q Consensus 469 ~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (695) ++.+. .....|+++.+|+|..+...+.....+............................. .......... T Consensus 434 ~~~~~--------~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 504 (551) T protein:vir:80 434 SVKIL--------AEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNL-QMLQEQTGNR 504 (551) T ss_pred HHHHH--------HHHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCcchhhhhhcc-ccccCcCCCC Confidence 54322 23446899999999887754421111111000000000000000000000000000 0000000000 Q ss_pred CccchhhhhhhhhccccccccccCceEEEEEEEEEcCCeEEEEEeCCCceeCCcceeCCCCC Q lcl|Aclame:pro 549 GATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNET 610 (695) Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~lPGG~vE~gEs 610 (695) ....... .+ ... .......-..-+-++++ ..+|+=..=|=+=+.+.| T Consensus 505 ~~~~~~~-------~p-~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 551 (551) T protein:vir:80 505 VSTDVED-------IP-DGK-DTTGDIGKDGQRKDKDN------ANAGKQGMKGDKPNDWQT 551 (551) T ss_pred CCCCCCC-------CC-Ccc-ccCCCccccccccCccc------cchhhhhcCCCCccccCC Confidence 0000000 00 000 00000000001111111 001100000111111111 No 31 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=99.53 E-value=3.7e-14 Score=94.22 Aligned_cols=447 Identities=11% Similarity=-0.048 Sum_probs=215.0 Q ss_pred HHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhc Q lcl|Aclame:pro 27 LAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVT 106 (695) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (695) .-.+-++..+.+++|.. ....+.+..|.....+.+.....++.... .. .......+.. T Consensus 1 M~~~~~l~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~g~~~~~~~ 58 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRM-------------------SIDDYAQMLNEFAFNGIGYGFGGGVPRIQ-QT--LAGPSTELAP 58 (466) T ss_pred CchhHHHhhccCccccc-------------------chhhhhhhhhhhhccccccccccccHHHH-Hh--hccccccccC Confidence 22233333322222211 11111222222111111110000000000 00 0000000100 Q ss_pred cCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHH Q lcl|Aclame:pro 107 SSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDA 186 (695) Q Consensus 107 ~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 186 (695) . ++... .-..+.+++.+.++|+++|+++-.--+++..... | .....+....-.|...=........ T Consensus 59 ~-~g~~v-~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~------~------~~~~~~~~~~~~L~~~PN~~~t~~~ 124 (466) T protein:vir:81 59 D-TFVGL-ATQAYQANGPVFACMLVRQLVFSSVRFRWQRLRD------G------KPSDTFGSRDLQILETPWKGGTTQD 124 (466) T ss_pred c-ccccc-chhhhhccHHHHHHHHHHHHhhccCceEEEEecC------C------ceeeccccHHHHHhhCCCCCCCHHH Confidence 0 11100 1234567889999999999998876655532110 0 0011111112122222122233444 Q ss_pred HHHHHH-hcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc Q lcl|Aclame:pro 187 VRTTVI-HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG 265 (695) Q Consensus 187 ~~~a~~-~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~ 265 (695) |.+.+. ..-|+|-++++|.-.+.+ ++. ....|....+.++.+..+++.... |....- .-.|++.+ T Consensus 125 f~~~l~~~lll~Gnay~~i~r~~~g-----~l~----~~~~g~~~~l~~l~~~~v~~~~~~--~~~~~~---~y~~~~~~ 190 (466) T protein:vir:81 125 MLSRMIQDADLAGNSYWTIVDGEFV-----RMR----PDWVDVVVEERMVRGGRGELGGGQ--LGWRKV---GYLYTEGG 190 (466) T ss_pred HHHHHHHHHHhcCCeEEEEEecCcc-----ccc----cccCcceeEEEEecCcceEEEEcC--CCceEE---EEEEEecC Confidence 544444 334588888887643211 111 112355778899998888764321 211110 11233433 Q ss_pred -------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcc Q lcl|Aclame:pro 266 -------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMP 336 (695) Q Consensus 266 -------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~ 336 (695) ..++++.||||.+...| ...+.|.|.++.+.+.|.....+......++...... +++++ ..++. T Consensus 191 ~~~~~~~~~~~~~dviHir~~~~~-----~d~~~G~s~i~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~--~~l~~ 263 (466) T protein:vir:81 191 RQSGNESVGFLAEDVVHFAPIPDP-----LASYRGMSWLTPILREIRADQAMSKHQAKFFDNGATVNLVIKHN--PMADP 263 (466) T ss_pred cccccceeeeccccEEEEcCCCCc-----ccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecC--CCCCH Confidence 45789999999764322 2345799999999999988888888888877765543 34444 34555 Q ss_pred hHHHHHHHHHHHHHHhcCCce-eEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCc-- Q lcl|Aclame:pro 337 GANVDLSMRAELINRYRDNRN-ILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNAS-- 411 (695) Q Consensus 337 ~~~~~l~~r~~~~~~~~~n~~-~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnat-- 411 (695) +..+.+.+.++..-..-.|.+ +++++ ++-+|+.++.+..+ +-+......+.||.+.+||-..| |.+..+-.+| T Consensus 264 e~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~l-G~~~~~~~st~s 341 (466) T protein:vir:81 264 AAVKKWADEVNSKHAGVDNAWKNLNLY-PGADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPPVIV-GLSEGLAAATYS 341 (466) T ss_pred HHHHHHHHHHHHHhcCccccccceEcC-CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-ccccCCCccccc Confidence 544555555544333333444 56676 46789998876543 34566778899999999996665 6543222233 Q ss_pred -chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEe--ccccccchhHHHHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 412 -SEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQW--NALRELDDLEVAESRYKQAQSDVLYVQEQ 487 (695) Q Consensus 412 -ge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f--~pL~~~se~e~Aei~~~~a~~~~~~~~~g 487 (695) -|...++||.. -|.|.+..+-+.+-+..+..- ...+.|+| .+|...+.++++++....++....++..| T Consensus 342 n~eq~~~~f~~~-------tl~P~~~~ie~~l~~~L~~~~~~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g 414 (466) T protein:vir:81 342 NYGQARRRLADG-------TAHPLWQNLSGCIGHVMPDMGPDVRLWYDADDVPFLREDEKDAADIQKVRAETINTLITAG 414 (466) T ss_pred cHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCCcccCcceEEEecchhhhccCHHHHHHHHHHHHHHHHHHHHcC Confidence 24445566644 377888777666554333211 11244444 57778899999999888888888888888 Q ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhc Q lcl|Aclame:pro 488 VIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNAN 562 (695) Q Consensus 488 ~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (695) ++++|++..+........... ... .......... ........... ... . .. . T Consensus 415 -~t~nE~r~~~~~gd~~~~~~~---~~~-----~~~~~~~~~~-~~~~~~~~~~~-----Gg~----~-ng---n 466 (466) T protein:vir:81 415 -YEPESVVAAVNSGDLRLLKHT---GLT-----SVQLLPPGVS-ASASSDTPTSG-----GAD----D-NG---N 466 (466) T ss_pred -CChhhccccccCCccccccCC---Ccc-----hhhhcccccc-cccCCCCcccC-----CCC----c-CC---C Confidence 488888764321111000000 000 0000000000 00000000000 000 0 00 0 No 32 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=99.52 E-value=3.1e-14 Score=94.65 Aligned_cols=400 Identities=12% Similarity=0.032 Sum_probs=208.3 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhcc-C--CCCchHHHHHHHhC Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTS-S--GFPGFPTLVLLAQL 122 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~f~gy~~~a~~~~~ 122 (695) |.-..-|..+ .+... .. .. .+....+++.+ . +...... ..+.++ T Consensus 1 m~~~~~f~~~---------------------~~~~~-~~--~~--------~~~~~~~~~~~~~~~~~~~v~~-~~al~~ 47 (416) T protein:vir:12 1 MLLERMFEKR---------------------SGSSD-HE--DG--------FNNILLNMFGGRKTASGERVSE-SNSLVQ 47 (416) T ss_pred Cccchhcccc---------------------cCccc-cC--cc--------chhHHHHhhcCcccccCceech-hhhhcc Confidence 2221111111 00000 00 00 00000011000 0 0000001 112246 Q ss_pred hhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEE Q lcl|Aclame:pro 123 PEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAH 201 (695) Q Consensus 123 ~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~ 201 (695) +-+.++|+.+|++.-.--+++.....+ |. ....+......|...=..+.-+..|.+.+... -++|-++ T Consensus 48 ~~v~~~i~~Ia~~ia~l~~~~~~~~~~-----~~------~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~ 116 (416) T protein:vir:12 48 PDIFACVNVLSDDIAKLPIHTYKRTDG-----GI------ERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAY 116 (416) T ss_pred HHHHHHHHHHHHhhhhCceEEEEecCC-----cc------ccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeE Confidence 677899999999987665443211100 00 00011122233333333334444555555544 4578888 Q ss_pred EEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE--cce--EEchhhEEEec Q lcl|Aclame:pro 202 PYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--IGT--EVHATRLHTIV 277 (695) Q Consensus 202 i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i--~~~--~iH~SRli~~~ 277 (695) +++.-+. .|.+.+|.++++..|++..... +.+.+|++ .|. .++.+.||++. T Consensus 117 ~~i~r~~-----------------~G~~~~L~~l~~~~v~v~~~~~--------~~~~~~~~~~~g~~~~~~~~eiih~~ 171 (416) T protein:vir:12 117 SYIQFGS-----------------HGYPEALFPLRPDYTNAYVHPT--------TGMLWYQTVLNGKAIELYDYEVLHFK 171 (416) T ss_pred EEEEECC-----------------CCcEEEEEEECCcceEEEEeCC--------CcEEEEEEecCCeEEEecCccEEEec Confidence 7765321 2346778899998887643211 12334544 454 67899999997 Q ss_pred CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 278 SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDN 355 (695) Q Consensus 278 ~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n 355 (695) ...+ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.++++ ...+. T Consensus 172 ~~~~-------~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~--~~~~~e~~~~~~~~~~---~~~~~ 239 (416) T protein:vir:12 172 GLST-------DGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVP--AFLDEKPKENVRKEWK---RVNKV 239 (416) T ss_pred CcCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecC--CCCCHHHHHHHHHHHH---HHhcC Confidence 5432 24579999999999999988888888887776544 345554 2344444445554443 44456 Q ss_pred ceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhH Q lcl|Aclame:pro 356 RNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQ 433 (695) Q Consensus 356 ~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p 433 (695) .++.+++. +-+|++++.+... +-+......+.||.+.+||..+|-+.. +|-.++.|...++||.. -|.| T Consensus 240 ~~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~t~sn~e~~~~~f~~~-------~l~P 310 (416) T protein:vir:12 240 ENIAIIDY-GLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELD-KATFSNIEHQSIEYVRN-------TLQP 310 (416) T ss_pred CCeeecCC-CceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCcc-CCCcccHHHHHHHHHHH-------HHHH Confidence 67777874 6789999877664 447778888999999999999995533 33334556566677754 4788 Q ss_pred HHHHHHHHHHHHhcCCC--CCceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 434 LMNDVIVMIQLSLFGAV--DPSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 434 ~l~~l~~~l~~s~~g~~--~~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) .+..+-+.+-+..+... ..++.|+ +..|...+.+++ +++..+++..|+++.+|+|..+...+..+.... T Consensus 311 ~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~~ 383 (416) T protein:vir:12 311 WIVNFEQELNVKLFLDHDQKSGHYVKFNIDSELRGDSKTQ-------AEYLKTLHETGVLNKDEIRELLERNPIENGDKY 383 (416) T ss_pred HHHHHHHHHHHhhcCchhhcCCceEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee Confidence 88887776655443222 2234455 455656666665 456677889999999999998876654322111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchh Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPP 554 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (695) ... .................+.... ........ T Consensus 384 ~~~-----~n~~~~~~~~~~~~~~~~~~~~-------gge~~~~g 416 (416) T protein:vir:12 384 ISS-----LNYVFLDFLEEYQRLKAGGAMK-------GGDNKNEG 416 (416) T ss_pred eec-----cccccccccchhhccccccccC-------CCCCcCCC Confidence 000 0000000000000000000000 00000000 No 33 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=99.51 E-value=1.8e-13 Score=90.49 Aligned_cols=497 Identities=12% Similarity=0.034 Sum_probs=211.0 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcccchhhcccc-----------cccc---cccccccchh Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGAL-----------NALD---AAPVAEPSPS 66 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---~~~~~~~~~~ 66 (695) |- +++.+-.++.-.+.+....|.... ...+ ..+.+...+. T Consensus 1 ~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 54 (547) T protein:vir:63 1 MG--------------------------LFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPV 54 (547) T ss_pred Cc--------------------------hhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhcccchhhhchh Confidence 33 333333332222222211111100 0000 0111111111 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchH----HHHHHHhChhhhhHhhcchHHHhhCCce Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP----TLVLLAQLPEYRAMHEVLADECIRTWGE 142 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~----~~a~~~~~~~~r~~v~~~a~d~tR~~~~ 142 (695) +. ...+.. ++..+.+...|. ++..|+.++++++||++.++...+-..- T Consensus 55 ~~------------------~~~~~~----------g~~~~~~~~~~~~l~~l~~~~~~npiv~~~I~~~a~~ia~~~~~ 106 (547) T protein:vir:63 55 IG------------------SMSANP----------GFKTKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKP 106 (547) T ss_pred hh------------------eeeccc----------ccccCCccCChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhh Confidence 10 000000 111111222222 2345677999999999999876542100 Q ss_pred eeccchhhhhccCcccccc----ccccCCHHHHHHHHHHHHhhch--------HHHHHHHHHhc-CccceEEEEEEEcCC Q lcl|Aclame:pro 143 AIGGTKEKADTSGLAAGGN----AASTSDGDQLKQINDEIERLRI--------RDAVRTTVIHD-QAFGRAHPYFKIKGD 209 (695) Q Consensus 143 i~~~~~~d~~~~g~~~~~~----~~~~~~~~~~~~i~~~~~~l~~--------~~~~~~a~~~~-Rl~G~~~i~i~~~~d 209 (695) + -.+....||.+..- .....+...++.++..+++.+. +..|.+.+... -++|.+++++.-+. T Consensus 107 ~----~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~~i~rd~- 181 (547) T protein:vir:63 107 A----RHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNR- 181 (547) T ss_pred h----hhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHhhCCEEEEEEECC- Confidence 0 00000001111000 0011223444556666666543 23455555444 45777776655321 Q ss_pred CchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeE-EE-cc---eEEchhhEEEecCCcchhh Q lcl|Aclame:pro 210 DQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTW-WM-IG---TEVHATRLHTIVSRPVGDM 284 (695) Q Consensus 210 ~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y-~i-~~---~~iH~SRli~~~~~~~p~~ 284 (695) .|.+.+|.++++..|.+.... | .-....+..| ++ .+ ..+.++.||+|...++.+. T Consensus 182 ----------------~G~~~~L~~l~p~~V~~~~~~--~--g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~~~ 241 (547) T protein:vir:63 182 ----------------NQSMVRFVAKDPTTIFFATTA--D--GKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDI 241 (547) T ss_pred ----------------CCcEEEEEEecCceeEEEECC--c--cccccCceEEEEEcCCcEEEEeccccEEEecccCCCCc Confidence 234677888998888764221 1 1111112222 32 22 3568889999988765443 Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc-c-eeeechHHhhcchHHHHHHHHHHHHHHhcCCcee-EEE Q lcl|Aclame:pro 285 LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV-S-GILMDLAQALMPGANVDLSMRAELINRYRDNRNI-LFL 361 (695) Q Consensus 285 ~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~-~-v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~-~~l 361 (695) . +...|.|.++.+.+.|.....+......++..... . +++++....++.+..+.+.+.++..-..-+|.|- .++ T Consensus 242 ~---~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl 318 (547) T protein:vir:63 242 Y---ATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVV 318 (547) T ss_pred c---cccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCcccccccccc Confidence 2 34569999999999999988888888887765433 2 3455544445555445555555443333345554 344 Q ss_pred EcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCccc--------cc-CcchHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 362 DKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTG--------LN-ASSEGEIRVWYDYVRAYQRNA 430 (695) Q Consensus 362 d~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~G--------ln-atge~D~~nyyd~i~~~Qe~~ 430 (695) ..++-+|+.++.+..+ +-+......+.||.+-+||-..|--..-+. ++ ++-|.....||. .- T Consensus 319 ~~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~-------~t 391 (547) T protein:vir:63 319 SAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKN-------KG 391 (547) T ss_pred cCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHH-------HH Confidence 3334477777655433 334455677889999999999883211111 11 112222233333 33 Q ss_pred hhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 431 LQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 431 l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) |.|.+.++-..|-+..+......+.|.|+.+...+..+++.+ ......|+++.+|+|..+...+.....+.. T Consensus 392 L~P~~~~ie~~ln~~L~~~~~~~~~~~f~~~~~~~~~~~~~~--------~~~~~~g~lT~NE~R~~~gl~P~~egGD~~ 463 (547) T protein:vir:63 392 LQPLLGFIEDFINKHIVAEFGDKYTFQFVGGDIKSELESVKI--------LAEKAKVAMTVNEVRKELNLPGDVIGGDIP 463 (547) T ss_pred HHHHHHHHHHHHHhhcccccCCceEEEeeccccccHHHHHHH--------HHHHhCCCcCHHHHHHHhCCCCCCCCCcee Confidence 777777776655444443344578899998877776665432 234456899999999887654321111110 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcCCeEEE Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKVLL 590 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL 590 (695) .............................. ........... . ...+. .........-..-+-.+++ T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~---~~~~~--~~~~~~~~~~d~~~~~~~~---- 529 (547) T protein:vir:63 464 LNGVIVQRIGQLMQQEQFEHEKQQSNLQML----QEQTGNRVSTD-V---EDIPD--GKDTTGDIGKDGQRKDKDN---- 529 (547) T ss_pred ecccccccccccccccCCccccchhhcccc----ccccCCCCCCC-C---CCCCC--CcccCCCcCccccccCccc---- Confidence 000000000000000000000000000000 00000000000 0 00000 0000000000000111111 Q ss_pred EEeCCCceeCCcceeCCCCC Q lcl|Aclame:pro 591 MKRPAGDWGLPAGKVEGNET 610 (695) Q Consensus 591 ~~r~~g~W~lPGG~vE~gEs 610 (695) +.+|+=..=|=+=+.+.| T Consensus 530 --~~~~~~~~~~~~~~~~~~ 547 (547) T protein:vir:63 530 --ANAGKQGMKGDKPNDWQT 547 (547) T ss_pred --cchhhhhcCCCCccccCC Confidence 000100000001111111 No 34 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=99.50 E-value=2e-14 Score=95.73 Aligned_cols=383 Identities=13% Similarity=0.042 Sum_probs=197.0 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchH-HHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~-~~a~~~~~~~ 124 (695) |+- |+... ........ ...+.+.+..+ +..|-. .-....+++. T Consensus 1 M~~---------------------f~~~~----------~~~~~~~~----~~~~~~~~~~~-~~~~~~v~~~~al~~~~ 44 (397) T protein:vir:38 1 MPL---------------------LKLNK----------SHSQGFSL----NDPDWVNFLTG-GEAQKYVSADTALKNSD 44 (397) T ss_pred Ccc---------------------hhhhh----------cccCcccC----CchhhhhhhcC-CcCCceechHHhhccHH Confidence 211 11000 00000000 00000111111 111100 0112235788 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~ 203 (695) +.++|+++|+++-.-=++. +......|...-...--+..|.+.+.+. -++|-++++ T Consensus 45 V~~~v~~ia~~ia~~p~~~-----------------------~~~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~ 101 (397) T protein:vir:38 45 IFSLIMQLSGDLAMVRYTS-----------------------ESDRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAY 101 (397) T ss_pred HHHHHHHHHHHHhhCcccc-----------------------cccHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEE Confidence 9999999998875421111 1112222333323333455565555544 457888877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc------c--eEEchhhEEE Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI------G--TEVHATRLHT 275 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~------~--~~iH~SRli~ 275 (695) +.-+. .|.+.+|.++++..+++.... | |...+|++. | +.+.++.||| T Consensus 102 i~r~~-----------------~g~~~~l~~l~~~~v~i~~~~--~------~~~~~y~~~~~~~~~~~~~~~~~~eiih 156 (397) T protein:vir:38 102 RHKNT-----------------NGVDLSWEYLRPSQVQPMLLQ--D------GSGLIYNINFDEPAIGYMENVPAADVIH 156 (397) T ss_pred EEECC-----------------CCcEEEEEEEcCceeEEEEcC--C------CceEEEEEEeccccccceeEecCccEEE Confidence 65321 234667888888877654221 1 223345443 1 4688899999 Q ss_pred ecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 276 IVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYR 353 (695) Q Consensus 276 ~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~ 353 (695) |..... .....|.|.++.+...|.....+......++..... .+++++ ..+..+..+.+.++++...... T Consensus 157 ~~~~~~------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~--~~~~~e~~~~~~~~~~~~~~~~ 228 (397) T protein:vir:38 157 IRLLSK------NGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQ--KGGLLDAETRIARSKEISKQIH 228 (397) T ss_pred ecCCCC------CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeC--CCCCHHHHHHHHHHHHHHhccc Confidence 876432 223479999999999999888888888887766544 344443 3455555666777777666666 Q ss_pred CCceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 354 DNRNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNAL 431 (695) Q Consensus 354 ~n~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l 431 (695) ++.+.++++. +.+|+.++.+.. .+-+......++||++.+||..+|-|.. +-+++.| ....||. .-| T Consensus 229 n~~~~~vl~~-g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~--~~~~~~e-~~~~~~~-------~~l 297 (397) T protein:vir:38 229 NSDGPVVIDA-LEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQG--DQQSSIT-QISGQYA-------KSL 297 (397) T ss_pred ccCCceecCC-CceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CcccHHH-HHHHHHH-------HHH Confidence 6667788874 788998887644 3456778889999999999999986532 2122223 4455552 247 Q ss_pred hHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 432 QQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 432 ~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) .|.+..+-+.+-+..+.. .++.+. -+...+.++ .++.+.+++..|+++++|+|..+...+..+...... T Consensus 298 ~P~~~~ie~~ln~~l~~~--~~~~~~--~~~~~d~~~-------~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~ 366 (397) T protein:vir:38 298 NRYVQAIVGELNDKLHAN--ISANIR--FAIDAMGDQ-------YASTISSSVKGGTIAGNQARFILQNSGYLAKDLPDP 366 (397) T ss_pred HHHHHHHHHHHHHhccCh--hccccc--ccccCCHHH-------HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccccc Confidence 787777766554433322 223332 233334333 356677788999999999999876544322110000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhh Q lcl|Aclame:pro 512 ANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPT 555 (695) Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (695) .... .. ...... ...+...... .. ....... T Consensus 367 ~~~~---~~-~~~~~~----~~~g~~~~~~----~~-e~~~~~~ 397 (397) T protein:vir:38 367 EKEP---QQ-AIQLIQ----QEGGENDGNN----SD-ERGSDPE 397 (397) T ss_pred cccc---cc-cccccc----cccCCCCCCC----CC-CCCCCCC Confidence 0000 00 000000 0000000000 00 0000000 No 35 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=99.48 E-value=1.6e-14 Score=96.24 Aligned_cols=469 Identities=11% Similarity=0.030 Sum_probs=217.3 Q ss_pred cccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchH-------HHHHHHhCh Q lcl|Aclame:pro 51 ALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-------TLVLLAQLP 123 (695) Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~-------~~a~~~~~~ 123 (695) ..-++ ...+++|...-. .+ ... +.+....+.|++ ....+.+++ T Consensus 1 ~~~~~-~~~~~~p~~~~~-------~~-------~~~---------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 50 (518) T protein:vir:78 1 MLLAN-GQTLSAPAMAEL-------SP-------QMQ---------------DSYYYAPAVGMQLERQFSLYGGIYKNQP 50 (518) T ss_pred CcccC-ceeeccchhhhh-------hh-------hhh---------------hcccccceeceecccccchhhHHhhhhH Confidence 10010 011111110000 00 000 000000111111 013456889 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHP 202 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i 202 (695) .+.++|+++|++.-.--+++.....+ .....+......|...=..+--...|.+.+... -++|-+++ T Consensus 51 ~V~acV~~IA~~iA~lp~~l~~~~~~------------~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~ 118 (518) T protein:vir:78 51 WVRTVIAKRAQALARLPVKCMFTSGD------------TETEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYL 118 (518) T ss_pred HHHHHHHHHHHhhccCceEEEEEcCC------------ccccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEE Confidence 99999999999976654444211100 001111111222222212222333454444433 45788888 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc------c--eEEchhhEE Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI------G--TEVHATRLH 274 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~------~--~~iH~SRli 274 (695) ++.-+ ..|.+..|.++++..|++.... + +-...|++. + ..+..+.|| T Consensus 119 ~i~r~-----------------~~G~~~~L~~l~p~~Vtv~~~~--~------~~~~~y~~~~~~~~~~~~~~~~~~eIi 173 (518) T protein:vir:78 119 AIQKN-----------------KSGTPEKLMPMHPSRVAIKRNS--R------TGRYEYYFQAGAGVGTQLVSFADDEVV 173 (518) T ss_pred EEEEc-----------------CCCcEEEEEEECCCceEEEEcC--C------CCEEEEEEEecCCccceeEEecCCcEE Confidence 87532 2345678899999888764321 1 112234332 1 357889999 Q ss_pred EecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHh Q lcl|Aclame:pro 275 TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRY 352 (695) Q Consensus 275 ~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~ 352 (695) ||.+... .....|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.+.++..... T Consensus 174 Hir~~~~------dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~--~~ls~e~~~~~k~~~~~~~~G 245 (518) T protein:vir:78 174 PIRFFNP------DGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHE--KRLSPEAQQRLREQFDRAHAG 245 (518) T ss_pred EecCCCC------CcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecC--CCCCHHHHHHHHHHHHHHhcC Confidence 9875432 122359999999999999988888888887766554 345554 445555555666666555444 Q ss_pred cCCce-eEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 353 RDNRN-ILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRN 429 (695) Q Consensus 353 ~~n~~-~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~ 429 (695) .+|.| +.+++ ++.+|+.++.+..+ +-+......+.||.+.+||-.+| |...++-.++-|.-...||..+ T Consensus 246 ~~nag~~~vL~-~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~l-g~~~~st~sn~e~~~~~f~~~t------ 317 (518) T protein:vir:78 246 SSNTGKTMVVE-EGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIV-HILDRATFSNISAQMRAFYRDT------ 317 (518) T ss_pred cccCCceeEcC-CCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccCCCCCchhHHHHHHHHHHHH------ Confidence 34444 56666 46789988876443 44556677789999999998887 6554443344455556666543 Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 430 ALQQLMNDVIVMIQLSLFGAVDPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYA 507 (695) Q Consensus 430 ~l~p~l~~l~~~l~~s~~g~~~~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~ 507 (695) |.|.+..+-+.+-+..+-..... +.|....|...+.+++ +++...++..|+++.+|+|..+...+..... T Consensus 318 -L~P~~~~ie~eln~~L~~~~~~~~~~~fd~~~Llr~D~~~r-------~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~ 389 (518) T protein:vir:78 318 -MAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDWEAK-------SESTQKMVNSGVATPNEGREIMGLPRSDDPK 389 (518) T ss_pred -HHHHHHHHHHHHHHhhcccccCcceEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 77777777665544332222223 4444446666666655 5566777889999999999887654332100 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEE---EEc Q lcl|Aclame:pro 508 GKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAV---YVV 584 (695) Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~ 584 (695) . ......... ........-...+...... ............. . .........+. ...=+ .-+ T Consensus 390 g---D~~~v~~n~--~pl~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~---~-~~~~~~~~~~~--~~~~~~~~~~~ 454 (518) T protein:vir:78 390 A---DELYANSAL--QPLGATPDGAVEGEEAPAP----KRPASTPVASLDQ---S-PPASVPGLSPT--NSDRSTDSGKT 454 (518) T ss_pred C---ceeeecccc--eecccccccccCCCCCCCC----CCCCccccccccc---C-ccccCCCCCcc--ccccccccccc Confidence 0 000000000 0000000000000000000 0000000000000 0 00000000000 00000 001 Q ss_pred CCeEEEEEeCC-----CceeCCcceeCCCCCHHHHHHH------------------HHHHhcCc Q lcl|Aclame:pro 585 DGKVLLMKRPA-----GDWGLPAGKVEGNETPEEAARR------------------ETREETGY 625 (695) Q Consensus 585 ~~~vLL~~r~~-----g~W~lPGG~vE~gEs~~~aa~R------------------Ev~EEtGl 625 (695) +.+-++.+-+. .+-.+..|.+-.|.+++--|.. -+.|.-.- T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (518) T protein:vir:78 455 EPRRLMQKPPPKESSPKHLRAVKGAMGRGKDIKGFALQLAEKYPDDLEDILLAVQLALAERKDN 518 (518) T ss_pred chhcccCCCCcccccchHHHHHHHHhhcCCcchhhhhhhhhhcchhHHHHHHHHHHhhhhccCC Confidence 12233322110 1223335555555554443332 12221111 No 36 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=99.48 E-value=4e-14 Score=94.01 Aligned_cols=369 Identities=12% Similarity=0.030 Sum_probs=196.3 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCc-hHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG-FPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g-y~~~a~~~~~~~ 124 (695) |.=.+++...+.... .. .+..+ .... ....+++.+ +-....+.+++. T Consensus 1 Mg~~~~~~~~~~~~~-~~-------------------------~~~~~-----~~~~-~~~~~~~~~~~v~~~~al~~~~ 48 (385) T protein:vir:10 1 MGLLTPRNFNKRKAK-NM-------------------------VYPSN-----PAFF-TTTVGGMQLSYVSALSALQNTN 48 (385) T ss_pred Cccccchhccccccc-cc-------------------------ccccc-----hhhh-hhhccccCccccCHHHhhccHH Confidence 332221111100000 00 00000 0000 000011111 111223345778 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~ 203 (695) ++++|+++|+++-..-+++....... |...=..+-....|.+.+.+.. |+|-++++ T Consensus 49 v~~~i~~ia~~ia~~p~~v~~~~~~~-----------------------ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~ 105 (385) T protein:vir:10 49 VYSVINRIASDVASAHFKTENTATLN-----------------------RLESPSSLIGRFSFWQGALMQLCLSGNDYIP 105 (385) T ss_pred HHHHHHHHHHHHhhCceeeeccchhh-----------------------hhhcCCCCCCHHHHHHHHHHHhhhcCCeEEE Confidence 89999999999887766653222111 1111123334556666666555 47888877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc------ceEEchhhEEEec Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI------GTEVHATRLHTIV 277 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~------~~~iH~SRli~~~ 277 (695) +. ++. .++.++++..+.+.. |... .+|++. .+.+.++.||||. T Consensus 106 i~--r~~-------------------~~~~p~~~~~v~~~~----~~~~------~~~~~~~~~~~~~~~~~~~eiihik 154 (385) T protein:vir:10 106 LV--GQN-------------------LEHIPNSDVQINYLP----GNMG------IVYTVLESNDRPQMVLRQDQMLHFR 154 (385) T ss_pred EE--cCc-------------------eeEeecCCceEEEEE----cCCc------eEEEEEEcCCceEEEEccccEEEec Confidence 54 221 124455555554321 1111 223331 2458999999998 Q ss_pred CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhc-chHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 278 SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALM-PGANVDLSMRAELINRYRD 354 (695) Q Consensus 278 ~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~-~~~~~~l~~r~~~~~~~~~ 354 (695) ....+.. ....|.|.++.+.+.+.....+......++..... .+++++ ..+. .+..+.+.++++......+ T Consensus 155 ~~~~~~~----~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~--~~~~~~e~~~~~~~~~~~~~~~~n 228 (385) T protein:vir:10 155 LMPDPQY----RYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTIS--NYLSDGKDLESAREEFEKANTGDN 228 (385) T ss_pred cCCCCcc----cccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC--CCCCCHHHHHHHHHHHHHHhCccc Confidence 6432211 12369999999999999888888888887766443 344444 2333 2344556666665544433 Q ss_pred CceeEEEEcCCceeEEEecccCChH---HHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 355 NRNILFLDKATEEFFQFNTPLSGLD---ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNAL 431 (695) Q Consensus 355 n~~~~~ld~~~e~~~~~~~~lsgl~---~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l 431 (695) ..+.++++. +.+|+.++.+....+ +......++||.+.+||-.+|-+...++.+.+.-+..+.||.. -| T Consensus 229 ~~~~~vl~~-g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~-------~l 300 (385) T protein:vir:10 229 SGRLMVLPD-GFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLA-------NL 300 (385) T ss_pred cCCccccCC-CceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHH-------HH Confidence 334677764 678999888766654 3456667899999999988886543333322222233444421 36 Q ss_pred hHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh- Q lcl|Aclame:pro 432 QQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL- 510 (695) Q Consensus 432 ~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~- 510 (695) .|.+..+.+-+-+..++ +++.|.+.+|...+.+++ +++..++++.|+++++|+|..+...+........ T Consensus 301 ~P~~~~ie~~l~~~l~~---~~~~f~~~~ll~~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~ 370 (385) T protein:vir:10 301 NSYVNPIVDELRLKMNA---PDLELDIKDMLDVDDSAL-------INQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF 370 (385) T ss_pred HHHHHHHHHHHHHhhCC---ceEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCccc Confidence 78888777766654432 468888888888888776 5667778889999999999876544322111000 Q ss_pred h-hhhhhhhhhhhhh Q lcl|Aclame:pro 511 D-ANDDPGVPADDDI 524 (695) Q Consensus 511 ~-~~~~~~~~~~~~~ 524 (695) . ............. T Consensus 371 ~~~~~~~~~g~~~dn 385 (385) T protein:vir:10 371 KPLTTQVKGGDEGDN 385 (385) T ss_pred cCcccccCCCCCCCC Confidence 0 0000000000000 No 37 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=99.47 E-value=1.7e-13 Score=90.63 Aligned_cols=403 Identities=13% Similarity=-0.023 Sum_probs=201.9 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCC--CchHHHHHHHhCh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGF--PGFPTLVLLAQLP 123 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~gy~~~a~~~~~~ 123 (695) |.=..-+........... .. ..+ +|...++. ....... ..+++ T Consensus 1 m~~~~~~~~~~~~~~~~~---------~~--~~~-----------------------~~~~~~~~~g~~v~~~~-al~~~ 45 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNW---------QV--VPG-----------------------GMRSSSSQAGVIITPET-ALALS 45 (419) T ss_pred CcchhhhccCCccccccc---------cc--ccc-----------------------ccccccccCCceechHH-hhccH Confidence 332222111110000000 00 000 00000000 0111111 22467 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCcccccccccc-CCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAAST-SDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAH 201 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~ 201 (695) -++++|+++|++.-.--+++.....+ | .... .+......|...-....-...|.+.+. .--++|-++ T Consensus 46 ~v~~~i~~ia~~ia~lp~~~~~~~~~-----g------~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~ 114 (419) T protein:vir:57 46 AVRACVTLLAESVAQLPCVLYRRTEN-----G------GREIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSY 114 (419) T ss_pred HHHHHHHHHHHhhccCceEEEEEcCC-----C------ceeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeE Confidence 78999999998865543332111000 0 0000 011122223222223333444544444 334678887 Q ss_pred EEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--ceEEchhhEEEecCC Q lcl|Aclame:pro 202 PYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--GTEVHATRLHTIVSR 279 (695) Q Consensus 202 i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~~~iH~SRli~~~~~ 279 (695) ++|.-. ..|.+.+|.++++.++++.... .|.+ +|++. ++.+..+.||++... T Consensus 115 ~~i~r~-----------------~~G~~~~L~pl~~~~v~v~~~~--------~g~~-~y~~~~~~~~~~~~~vih~r~~ 168 (419) T protein:vir:57 115 SLIDRN-----------------GRGDITELIPINPHKVIVLKGP--------DGMP-YYDIPSIGEILPMRMVHHIKSF 168 (419) T ss_pred EEEEEC-----------------CCCcEEEEEEEcCcceEEEECC--------CceE-EEEEcCCceEEchhhEEEecCc Confidence 776532 1245678999999888763221 1232 45664 567889999998764 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeech--HHhhcchHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDL--AQALMPGANVDLSMRAELINRYRDN 355 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~--~~~l~~~~~~~l~~r~~~~~~~~~n 355 (695) +. ..+.|.|.++.+...+.....+......++...... +++++. ...++.+.-+.+.+.+...-..-.| T Consensus 169 ~~-------d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~n 241 (419) T protein:vir:57 169 SL-------DGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAILAKWTERYGGVRN 241 (419) T ss_pred CC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHHHHHHHHhccccc Confidence 32 245799999999999988888887777776664432 445432 2334433334444444332222223 Q ss_pred -ceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 356 -RNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 356 -~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~ 432 (695) .++++++ ++.+|+.++.+... +-+......+.||++.+||..+|-+ ..++-.++.|.....||+.+ |. T Consensus 242 ag~~~vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~~t~sn~e~~~~~f~~~~-------l~ 312 (419) T protein:vir:57 242 AFSVGMLQ-EGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQD-LQKSTNNNIEHQGLQYVIYT-------ML 312 (419) T ss_pred cccceecC-CCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCCccccHHHHHHHHHHHH-------HH Confidence 3456666 46789888876543 4466677788999999999988844 33444455566667777554 78 Q ss_pred HHHHHHHHHHHHHhcCCC-CCceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLSLFGAV-DPSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 433 p~l~~l~~~l~~s~~g~~-~~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) |.+..+-+.+-+..+... ..++.++ +..|...|.++++ +...++++.|+++.+|+|+.+...+..+.... T Consensus 313 P~~~~ie~~l~~~ll~~~~~~~~~i~fd~~~ll~~d~~~~~-------~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~ 385 (419) T protein:vir:57 313 AILKRHESAMMRDLLLPSERRDFYIEFNVSSLLRGDQKSRY-------ESYALGRQWGWLSVNDIRRMENLTPIPGGDKY 385 (419) T ss_pred HHHHHHHHHHHhhccCccccCCeEEEEechhhhccCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 888887766655444221 1244444 4567677777764 45566788999999999988766544322111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhc Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNAN 562 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (695) ........... . .. ..................+. T Consensus 386 ~~~~n~~~~~~----~-~~--------------~~~~~~~~~~~~~~~~~~~~ 419 (419) T protein:vir:57 386 LTPLNMVDSKA----L-TG--------------IGKATPQQLKDIEAILCTRN 419 (419) T ss_pred eeccccccccc----c-cc--------------ccCCCcccCcchhhhhhccC Confidence 00000000000 0 00 00000000000000000000 No 38 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=99.47 E-value=8.4e-14 Score=92.27 Aligned_cols=414 Identities=12% Similarity=0.085 Sum_probs=200.3 Q ss_pred CCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhh--hhhhccCCCCchHHH Q lcl|Aclame:pro 39 AQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDA--LSFVTSSGFPGFPTL 116 (695) Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~gy~~~ 116 (695) -+++ +.|....+... .+.++..+.. .++. ..++.+... +++....+.... .. T Consensus 1 ~~~~-~~mg~f~r~~~-----~~~~~~~~~~-------~~~~------------~~~~~~~~~~~~~~~~~~~g~~v-~~ 54 (432) T protein:vir:81 1 MPDE-KKLGLFGQLKA-----MFVPPDPVDI-------GGGQ------------TFTPVNATARDLGIIISDTGAAV-NA 54 (432) T ss_pred CCch-hhcchhhhhhh-----hccccccccc-------cccc------------ccccCccchhhhcccccccCccc-ch Confidence 1111 11322222110 1111000000 0000 000111100 011111111111 11 Q ss_pred HHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cC Q lcl|Aclame:pro 117 VLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQ 195 (695) Q Consensus 117 a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~R 195 (695) ..+.+++.+.++|+++|++.-.-=+++.-...+ |. ....+......|...=...--...|.+.+.. .- T Consensus 55 ~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~-----g~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~ll 123 (432) T protein:vir:81 55 DAIMRLDAVAACVKLVSQAIAAMPLTMYMRTPD-----GR------KEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLL 123 (432) T ss_pred HhhhccHHHHHHHHHHHHhhhhCceeeEEecCC-----cc------eecccchHHHHHHhcccccCCHHHHHHHHHHHHh Confidence 234467888999999999976543332111000 00 0001112223333222223334445555554 34 Q ss_pred ccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE---cc--eEEch Q lcl|Aclame:pro 196 AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM---IG--TEVHA 270 (695) Q Consensus 196 l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i---~~--~~iH~ 270 (695) |+|-+++++.- .+ |.+..|.++.+.++++.. |+. |.+ .|.+ .| ..++. T Consensus 124 l~Gnayv~i~~-~~-----------------g~~~~L~~l~~~~v~v~~----~~~----g~~-~y~~~~~~g~~~~~~~ 176 (432) T protein:vir:81 124 LDGTAYVRKVV-TD-----------------GRIESLQYLANDRLTITT----DPK----GNT-AYRYRRTDGQMIDIPK 176 (432) T ss_pred hcCCeEEEEEe-cC-----------------CcEEEEEEEcCCceEEEE----CCC----CcE-EEEEEecCceEEEEcc Confidence 57777766542 11 235578888888887642 221 222 3333 34 36899 Q ss_pred hhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHH Q lcl|Aclame:pro 271 TRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAEL 348 (695) Q Consensus 271 SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~ 348 (695) +.|+||.+.++ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.+++ T Consensus 177 ~~iih~r~~~~-------dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~--~~l~~e~~~~~~~~~-- 245 (432) T protein:vir:81 177 QQIWKIMGYSL-------DGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQID--RFLTDDQYDSFAKKV-- 245 (432) T ss_pred ccEEEecCCCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecC--CCCCHHHHHHHHHHH-- Confidence 99999976543 24579999999999998888887777776654333 355554 334444434444443 Q ss_pred HHHhcCCceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcc---hHHHHHHHHHH Q lcl|Aclame:pro 349 INRYRDNRNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASS---EGEIRVWYDYV 423 (695) Q Consensus 349 ~~~~~~n~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatg---e~D~~nyyd~i 423 (695) ....+..++++++. +.+|++++.+..+ +-+......++||.+.+||-.+| |....|-.+++ |.-.+.||.. T Consensus 246 -~~~~nag~~~vl~~-g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~~sn~eq~~~~f~~~- 321 (432) T protein:vir:81 246 -SGSVEAGRAPLLEG-GMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMI-GHSSAGTTSWGSGIESQQLGFLTM- 321 (432) T ss_pred -hhhhcCCCceecCC-CceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHc-CCcCCccccccchHHHHHHHHHHH- Confidence 33444556788874 6789999876554 44666788889999999998777 65544443332 3334556543 Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhcCCCC-CceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 424 RAYQRNALQQLMNDVIVMIQLSLFGAVD-PSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNT 500 (695) Q Consensus 424 ~~~Qe~~l~p~l~~l~~~l~~s~~g~~~-~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~ 500 (695) -|.|.+..+-+-+-+..+.... ..+.++ ...|...+.+++ +++..+++..|+++.+|+|..+.. T Consensus 322 ------tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d~~~r-------~~~~~~~~~~G~~t~NE~R~~~gl 388 (432) T protein:vir:81 322 ------TLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAAR-------SSYYSQLVNNGLMTRDEAREIEGL 388 (432) T ss_pred ------HHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccCHHHH-------HHHHHHHHhCCCCCHHHHHHHhCC Confidence 3677777766655554432211 233444 446666666665 456667788999999999998866 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhh Q lcl|Aclame:pro 501 EPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNA 561 (695) Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (695) .+..+..... ............ +.. ............... .... T Consensus 389 pp~~g~~~~~------~~~~~~~pl~~~------~~~---~~~~~~~~~~n~~~~--~~~~ 432 (432) T protein:vir:81 389 PKLGGNAAVL------TVQSAMVPLDSI------GLQ---ASPEPASGLGNQQQD--KVSK 432 (432) T ss_pred CCCCCCcceE------eecCcccchhhh------ccC---CCCCCCCCCCCcccc--cccC Confidence 5543221110 000000000000 000 000000000000000 0000 No 39 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=99.46 E-value=8.9e-14 Score=92.14 Aligned_cols=398 Identities=13% Similarity=0.050 Sum_probs=196.6 Q ss_pred cChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccc---ccccccccccccc Q lcl|Aclame:pro 21 VAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRE---RRAASYALDFNGT 97 (695) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 97 (695) |.=|-.|- .-|.++..+.++.+ .+..|. . |.+-.|+.|......-.... .+.+++... T Consensus 1 ~~~~~~~~----------~~~~~~~~~~~~~~--~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---- 61 (409) T protein:vir:83 1 MGFWSNLF----------GIPSIPDLPNDNGP--VDYNPG-D--PDMVEFRGPEEEPEARALPWIRPTAWSGYPES---- 61 (409) T ss_pred Cchhhhhc----------ccccCCCccccccc--ccccCC-C--CceeeccCCCcchhhhhccccccccccccccc---- Confidence 22222221 11112212222211 111111 0 11111211111110000000 001111111 Q ss_pred chhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHH Q lcl|Aclame:pro 98 SMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDE 177 (695) Q Consensus 98 ~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~ 177 (695) |... ++.+ -.-..+.+++.+.++|+++++++-.-=+++... +. ..+ +....+... T Consensus 62 ------~~~~-~~~~-~t~~~~~~~~~v~acV~~Ia~~iA~lpl~~~~~--------~~--------~~~-~~~~ll~~~ 116 (409) T protein:vir:83 62 ------WATP-SWGS-AQDKLRTLIDVAWACIDLNASVLSSMPIYRMRN--------GR--------IID-SVAWMSNPD 116 (409) T ss_pred ------cccc-Cccc-cchhhHhhhHHHHHHHHHHHHhhccCceEEeeC--------Cc--------ccc-chhhhcccC Confidence 1111 1111 112334567788889999998865432222110 00 001 111111111 Q ss_pred HHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCC Q lcl|Aclame:pro 178 IERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYK 257 (695) Q Consensus 178 ~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~ 257 (695) =..+--+..|.+.+.+.-+.|++++++...+. .|.+..+.++++..+++... .| |. T Consensus 117 PN~~~t~~~f~~~l~~~lllGnay~~~i~r~~----------------~G~~~~L~pl~p~~v~v~~~--~~------g~ 172 (409) T protein:vir:83 117 PEVYTSWQEFAKQLFWDFQLGEAFVLPMAHGS----------------DGYPIRFRVVPPWLVNVELK--KG------AR 172 (409) T ss_pred CCCCCCHHHHHHHHHHHHhhCCcEEEEEEECC----------------CCcEEEEEEECCcceEEEEc--CC------ce Confidence 12233455666666666667888877554221 23456788889888765322 12 12 Q ss_pred ceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhc-c-ceeeechHHhhc Q lcl|Aclame:pro 258 PSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS-V-SGILMDLAQALM 335 (695) Q Consensus 258 P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~-~-~v~k~~~~~~l~ 335 (695) .+|+|++.. -.+.||||..... ...+.|.|-++.+...+.....+......++.... . .+++++ ..++ T Consensus 173 -~~y~~~~~~-~~~eiiHir~~~~------~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p~gil~~~--~~ls 242 (409) T protein:vir:83 173 -REYRIGGLN-VTDEILHIRYQGN------TADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVPLYWLGVE--RRLS 242 (409) T ss_pred -EEEEEcccc-CccceEEeCCCCC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEeecC--CCCC Confidence 356776653 3577888865322 23457999999999998877777776666655422 2 334444 3455 Q ss_pred chHHHHHHHHHHHHHHhcCCce-eEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccC-- Q lcl|Aclame:pro 336 PGANVDLSMRAELINRYRDNRN-ILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNA-- 410 (695) Q Consensus 336 ~~~~~~l~~r~~~~~~~~~n~~-~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glna-- 410 (695) .+.-+.+.++++. ...+|.| .+++..+.+.++.++.+..+ +-+........||.+-+||- .|+|....+-++ T Consensus 243 ~e~~~~~~~~~~~--~~~~nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp-~llg~~~~~~~~ty 319 (409) T protein:vir:83 243 ETEAVDLMDRWIE--SRSKYAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPP-FLVGLPGATGSLTY 319 (409) T ss_pred HHHHHHHHHHHHH--hhCCccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCH-HHccCCCCcccccc Confidence 5555556565543 2333444 35565444434445554332 33444556778999999996 555753222212 Q ss_pred -cchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcc Q lcl|Aclame:pro 411 -SSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVI 489 (695) Q Consensus 411 -tge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i 489 (695) .-|.....||.. -|.|.+.++-+.+-+..+- ....+.|.+..|...+.+++ ++..+.+++.|++ T Consensus 320 sn~eq~~~~f~~~-------tL~P~~~~ie~~l~~~Ll~-~~~~~~f~~~~llr~d~~~r-------~~~~~~~~~~G~l 384 (409) T protein:vir:83 320 SNIEQLFSFHDRS-------SLRPKATAVMAALDRWALP-SPQHLELNRDDYTRPSLVER-------ATAYKIMIEAGVM 384 (409) T ss_pred ccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCC-CCcEEEeehhhhhccCHHHH-------HHHHHHHHhCCCc Confidence 124455556543 3778887777666554431 12234455555555555554 5567788889999 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 490 RPDQVAARLNTEPDGPYAGKLDAND 514 (695) Q Consensus 490 ~~~e~r~~L~~~~~~~~~~~~~~~~ 514 (695) +.+|+|+.+...+..+.......+. T Consensus 385 T~NE~R~~~glpp~~ggd~l~~~gv 409 (409) T protein:vir:83 385 EPNEARAMERLHSEAAAVRLSGGGV 409 (409) T ss_pred CHHHHHHHhCCCCCCCCcccCCCCC Confidence 9999998876655444433333332 No 40 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=99.46 E-value=1.7e-13 Score=90.56 Aligned_cols=418 Identities=11% Similarity=0.032 Sum_probs=203.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhh-hhhccCCCCch-HHHHHHHhCh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGF-PTLVLLAQLP 123 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~gy-~~~a~~~~~~ 123 (695) |+|+-....-+ ....+..+.. +.+.+. +.+ .+.... .|..+.+-.|- -.-....+++ T Consensus 1 ~~~~l~~~~~~--~~~~~~~~~~---------~~~~~~------~~~----~~~~~~~~~~g~~~~~g~~v~~~~al~~~ 59 (434) T protein:vir:43 1 MSKSLGKVLSS--ATSAPRSSLF---------GWGGKT------IRL----TDGAFWSQFLGRESSSGKKVTVDKAMKLS 59 (434) T ss_pred Cccchhhhhhh--cccccchhhh---------cccccc------ccc----CchHHHHHHhcCCccCCceechhhhhccH Confidence 55543211110 0111111110 000000 000 000000 01111000000 0111234677 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHP 202 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i 202 (695) -+.++|+++|+++-.-=+++.....+ | ......+......|...=...--...|.+.+. +.-|+|-+++ T Consensus 60 ~V~~~i~~ia~~ia~lp~~~~~~~~~-----g-----~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~ 129 (434) T protein:vir:43 60 AVWACVRLISTSVAGLPLGVYERKAD-----G-----SRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYA 129 (434) T ss_pred HHHHHHHHHHHhhhhCceEEEEEcCC-----C-----ccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEE Confidence 88889999998876543332111000 0 00000111222223222222223344444444 3356788876 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE--cc--eEEchhhEEEecC Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--IG--TEVHATRLHTIVS 278 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i--~~--~~iH~SRli~~~~ 278 (695) +|. .++ |.+.+|.++++.+|++... . .|...++.. .| +.++++.|||+.+ T Consensus 130 ~i~--~~~----------------G~~~~L~~l~p~~v~~~~~----~----~g~~~y~~~~~~g~~~~~~~~eVih~~~ 183 (434) T protein:vir:43 130 EIR--RAA----------------GRPAALDFLLPSRVDLECD----E----NGRLKYFYTTKKGARREIERTNMLHIPA 183 (434) T ss_pred EEE--eCC----------------CcEEEEEEEcCcceEEEEc----C----CCeEEEEEEecCceEEEEccccEEEecC Confidence 653 111 3456788999998876422 1 133333333 23 5789999999976 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRDNR 356 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~ 356 (695) .++ ....|.|.++.+.+.|.....+......++...... +++++ ..++.+..+.+.+.++......+.. T Consensus 184 ~~~-------dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~--~~l~~e~~~~~r~~~~~~~g~~nag 254 (434) T protein:vir:43 184 FTL-------DGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVD--RILQPAQREEFREYVKSVSGAMNSG 254 (434) T ss_pred cCC-------CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecC--CCCCHHHHHHHHHHHHHhcCccccC Confidence 432 245799999999999988888888888877654433 44554 3455555555655555433233334 Q ss_pred eeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccccc--CcchHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSEGEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge~D~~nyyd~i~~~Qe~~l~ 432 (695) ++.+++. +.+|+.++.+.. .+-+......++||.+.+||-.+| |....+-+ ++-|.-...||.. -|. T Consensus 255 ~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~s~~e~~~~~f~~~-------~L~ 325 (434) T protein:vir:43 255 RSPVLEQ-GITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMI-GQTDKGSNWGTGLEQQMLAFLTF-------SIS 325 (434) T ss_pred CccccCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCcCCccccchHHHHHHHHHHH-------HHH Confidence 4677774 678999987654 455778888999999999997766 65543322 2223334455533 378 Q ss_pred HHHHHHHHHHHHHhcCCCC-CceeEEe--ccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLSLFGAVD-PSIKWQW--NALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 433 p~l~~l~~~l~~s~~g~~~-~d~~~~f--~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) |.+..+-.-+-+..+.... ..+.++| ..|...+.+++ ++...+++..|+++.+|+|..+...+..+.... T Consensus 326 P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~llr~d~~~r-------~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~ 398 (434) T protein:vir:43 326 SITNQIQQCVNKRLLTAPERIRYYAEFSLEGFLKADSAGR-------AAWYSTMAQNGFMTRNEGRRKENLPELPGGDIL 398 (434) T ss_pred HHHHHHHHHHHhhcCChhhhcCceEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeE Confidence 8887776666544432211 1344444 46666666665 566677888999999999998765543221111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) ........... ................ ........+ T Consensus 399 ~~~~n~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~ 434 (434) T protein:vir:43 399 TVQSNLVPIDQ---LGQSNKSQAVRAALMN-----WFSQPEPQE 434 (434) T ss_pred eeccCccchhh---hhccCCCcchhhhhhc-----cCCCCCCCC Confidence 00000000000 0000000000000000 000000000 No 41 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=99.46 E-value=1e-13 Score=91.86 Aligned_cols=415 Identities=12% Similarity=0.073 Sum_probs=199.8 Q ss_pred CCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCc-hHHHH Q lcl|Aclame:pro 39 AQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG-FPTLV 117 (695) Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g-y~~~a 117 (695) -+|. +-|..-++..+. +.|+..+.... . ...++.+.....+....+-.| +-... T Consensus 1 ~~~~-~~~g~~~~~~~~-----~~~~~~~~~~~-------~------------~~~~~~~~~~~~~~~~~~~~g~~v~~~ 55 (432) T protein:vir:97 1 MPDE-KKLGLLGQLKAM-----FVPPDPVDIGG-------G------------QTFTPVNATARDLGIIISDTGAAVNAD 55 (432) T ss_pred CCCc-ccCchhhhhHhh-----cCCcccccccc-------c------------cccccCchhhhhhcccccccCcccchH Confidence 1222 113222221111 11100000000 0 000001100001100000001 00112 Q ss_pred HHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCc Q lcl|Aclame:pro 118 LLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQA 196 (695) Q Consensus 118 ~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl 196 (695) .+.+++.+.++|+++++++-.-=+++--...+ |. ....+......|...=...--+..|.+.+. +.-+ T Consensus 56 ~a~~~~aV~~~v~~Ia~~ia~lp~~~y~~~~~-----g~------~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll 124 (432) T protein:vir:97 56 AIMRLDAVAACVKLVSQAVAAMPLMMYMRTPD-----GR------KEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLL 124 (432) T ss_pred hhhcchHHHHHHHHHHHhhccCceEEEEecCC-----Cc------ccccccHHHHHHHhcccccCCHHHHHHHHHHHHhh Confidence 34467889999999999875443322111000 00 001112222333322222333444555444 3345 Q ss_pred cceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE---cce--EEchh Q lcl|Aclame:pro 197 FGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM---IGT--EVHAT 271 (695) Q Consensus 197 ~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i---~~~--~iH~S 271 (695) +|-+++++.-. + |.+..|.++++.++++.. |. .|.+ .|++ +|+ .++.+ T Consensus 125 ~Gnay~~~~~~-~-----------------g~~~~L~~l~p~~v~v~~----~~----~g~~-~y~~~~~~g~~~~~~~~ 177 (432) T protein:vir:97 125 DGTAYVRKVVT-D-----------------GRIESLQYLANDRLTITT----DT----KGNT-AYRYRRTDGQMIDIPRQ 177 (432) T ss_pred cCCeEEEEEec-C-----------------CcEEEEEEEcCcceEEEE----cC----CCcE-EEEEEecCceEEEEccc Confidence 78887665421 1 235568888888887642 21 1222 3333 343 68899 Q ss_pred hEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHH Q lcl|Aclame:pro 272 RLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELI 349 (695) Q Consensus 272 Rli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~ 349 (695) .||++.+..+ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.+++ T Consensus 178 ~iih~r~~~~-------dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~--~~l~~e~~~~~~~~~--- 245 (432) T protein:vir:97 178 QIWKIMGYSL-------DGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQID--RFLTDDQYDSFSKKV--- 245 (432) T ss_pred cEEEecCcCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecC--CCCCHHHHHHHHHHH--- Confidence 9999876532 24569999999999998888888888877765443 356665 335544444444443 Q ss_pred HHhcCCceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcc---hHHHHHHHHHHH Q lcl|Aclame:pro 350 NRYRDNRNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASS---EGEIRVWYDYVR 424 (695) Q Consensus 350 ~~~~~n~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatg---e~D~~nyyd~i~ 424 (695) ....+..++.+++. +.+|+.++.+..+ +-+......+.||.+.+||-.+| |....|-.+++ |.-...||.. T Consensus 246 ~~~~nag~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~~~s~~e~~~~~f~~~-- 321 (432) T protein:vir:97 246 SGSVEAGRAPLLEG-GMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMI-GHSSAGTTSWGSGIESQQLGFLTM-- 321 (432) T ss_pred hhhhcCCCceecCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-CCcCCcccccchhHHHHHHHHHHH-- Confidence 33445556778874 6789999877554 34557788889999999998777 65433322222 3223444432 Q ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCC-Cc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 425 AYQRNALQQLMNDVIVMIQLSLFGAVD-PS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTE 501 (695) Q Consensus 425 ~~Qe~~l~p~l~~l~~~l~~s~~g~~~-~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~ 501 (695) -|.|.++.+-+-+-+..+.... .. +.|.+..|...+.+++ ++...+++..|+++.+|+|..+... T Consensus 322 -----tl~P~~~~ie~~ln~kLl~~~e~~~~~~~fd~~~llr~d~~~r-------~~~~~~~~~~G~~T~NE~R~~~glp 389 (432) T protein:vir:97 322 -----TLSPWLRRIEQSIALNLLTPAERRRYFADFDTSALLRADSAAR-------SSYYSQLVNNGLMTRDEAREIEGLP 389 (432) T ss_pred -----HHHHHHHHHHHHHhhhccCccccCceEEEeechhhhccCHHHH-------HHHHHHHHhCCCCCHHHHHHHhCCC Confidence 2667777666555544443221 12 4455556777777776 4466678888999999999887654 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhh Q lcl|Aclame:pro 502 PDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNA 561 (695) Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (695) +..+...... ............ ...... ........... .... T Consensus 390 p~~g~~~~~~------~~~~~~pl~~~~---~~~~~~------~~~~~~~~~~~--~~~~ 432 (432) T protein:vir:97 390 KLGGNAAVLT------VQSAMVPLDSIG---LQASPE------PASGLGNQQQD--KVSK 432 (432) T ss_pred CCCCCcceEe------ecccccchhhhc---ccCCCC------CCCCCCCcccc--cccC Confidence 4332211100 000000000000 000000 00000000000 0000 No 42 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=99.46 E-value=3.1e-13 Score=89.14 Aligned_cols=406 Identities=11% Similarity=-0.011 Sum_probs=199.0 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |+-+....... .+.. ...+ +.. ...++... ...+ ..+ ....-.+++-+ T Consensus 1 m~~~~~~~~~~-----~~~~------------~~~~-~~~-~~~~g~~~---s~~~-------~~v---~~~~al~~~~v 48 (419) T protein:vir:80 1 MFFSRQLLSNL-----GQTQ------------PGSG-GWV-SALLGSAR---SEAG-------QVV---TPASALSLTVL 48 (419) T ss_pred CCccccccccc-----CcCC------------CCcc-hhh-HHhhcccc---cccC-------ccc---ChHHhhccHHH Confidence 44321111100 0000 0000 000 00000000 0000 000 00112256788 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCcccccccccc-CCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAAST-SDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPY 203 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~-~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~ 203 (695) .++|+++|++.-.--+++.....+ .... .+......|...=....-...|.+++.+. -++|-++++ T Consensus 49 ~~cv~~ia~~ia~lp~~~~~~~~~------------~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~ 116 (419) T protein:vir:80 49 QNCVTLLAESIAQLPVELYERSGD------------DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSF 116 (419) T ss_pred HHHHHHHHHhhccCceEEEEecCC------------CcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEE Confidence 899999999986544433211110 0011 11122222332222233344555555544 467888877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc-eEEchhhEEEecCCcch Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG-TEVHATRLHTIVSRPVG 282 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~-~~iH~SRli~~~~~~~p 282 (695) +.-+ ..|.+.+|.++++.+|++... . .+.+ .|++.+ ..++.+-|+++...++ T Consensus 117 i~r~-----------------~~G~~~~L~~i~~~~v~i~~~----~----~~~~-~y~~~~~~~~~~~~i~h~~~~~~- 169 (419) T protein:vir:80 117 IDRD-----------------QDGVIQGLYPLDNEAVTVMKG----P----DLKP-MYRVAGADPLPQRLVHHVRWMSI- 169 (419) T ss_pred EEEC-----------------CCCcEEEEEEecCceEEEEEC----C----CceE-EEEEcCccccchhheEEecCCCC- Confidence 6432 124567899999998876422 1 1233 466665 4577777888776432 Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeech--HHhhcchHHHHHHHHHHHHHHhcCCce- Q lcl|Aclame:pro 283 DMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDL--AQALMPGANVDLSMRAELINRYRDNRN- 357 (695) Q Consensus 283 ~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~--~~~l~~~~~~~l~~r~~~~~~~~~n~~- 357 (695) ..+.|.|.++.+.+.|.....+......++...... +++++. ...+..+..+.+.+.++..-..-+|.| T Consensus 170 ------d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~ 243 (419) T protein:vir:80 170 ------NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKK 243 (419) T ss_pred ------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCC Confidence 345799999999999988888888777776664432 455542 122232222334444443322333433 Q ss_pred eEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHH Q lcl|Aclame:pro 358 ILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLM 435 (695) Q Consensus 358 ~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l 435 (695) +.+++ ++.+|+.++.+..+ +-+......+.||.+.+||..+| |..-+|-.++.|...+.||..+ |.|.+ T Consensus 244 ~~vl~-~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~ll-g~~~~~t~~n~e~~~~~f~~~~-------l~P~~ 314 (419) T protein:vir:80 244 VALLQ-EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFVIYT-------LLPWV 314 (419) T ss_pred ceecC-CCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHh-cCCCCCCcccHHHHHHHHHHHH-------HHHHH Confidence 56666 46789988876543 45666778899999999998887 4333344455565566676654 77877 Q ss_pred HHHHHHHHHHhcCCC-CCceeEEe--ccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 436 NDVIVMIQLSLFGAV-DPSIKWQW--NALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDA 512 (695) Q Consensus 436 ~~l~~~l~~s~~g~~-~~d~~~~f--~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~ 512 (695) ..+-+.+-+..+... ..++.++| ..|...+.++++ +...++++.|+++++|+|+.+...+..+....... T Consensus 315 ~~ie~~l~~kll~~~~~~~~~i~fd~~~l~~~d~~~~~-------~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~~~~~ 387 (419) T protein:vir:80 315 KRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRY-------AAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) T ss_pred HHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Confidence 777665554433211 12444444 455555666654 45666788999999999987765544321111000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccc Q lcl|Aclame:pro 513 NDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVK 564 (695) Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (695) ......... . . ....... .............. T Consensus 388 ~n~~~~~~~---~-------------~-~~~~~~~---~~~~~~~~~~~~l~ 419 (419) T protein:vir:80 388 MNMVDASKP---Q-------------P-IPMGKTE---PTKAALDEIGRILS 419 (419) T ss_pred ccccccccc---c-------------c-ccCCCCC---chhhhHHHHHhhcC Confidence 000000000 0 0 0000000 00000000000000 No 43 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=99.45 E-value=1.8e-13 Score=90.47 Aligned_cols=399 Identities=11% Similarity=0.024 Sum_probs=195.7 Q ss_pred cccccccccccc-chhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhh Q lcl|Aclame:pro 52 LNALDAAPVAEP-SPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHE 130 (695) Q Consensus 52 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~ 130 (695) ++.........- .+.+ ..+..... ....+. ++ .|.. .+|.|+.. ..+.+++.+.++|+ T Consensus 1 m~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~--~~-------~~~~-~~~~~v~~-~~a~~~~~v~~~i~ 59 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKL--IDNWIDQS--------TSKLYD--FS-------PWKN-RSFWGVIN-NTLETNETIFSAIT 59 (412) T ss_pred CccchhhhhhhhhhhhH--hhhhhccc--------cccccc--cc-------ccCC-ccccccch-hhhhccHHHHHHHH Confidence 444432111000 0000 00000000 000000 00 1111 12223222 34557888999999 Q ss_pred cchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEEEEEcCC Q lcl|Aclame:pro 131 VLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPYFKIKGD 209 (695) Q Consensus 131 ~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~i~~~~d 209 (695) ++|+++-.-=+++.... ...+.+....|...=..+--+..|.+.+. .--++|-+++++.-+. T Consensus 60 ~ia~~iA~lp~~~~~~~----------------~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~- 122 (412) T protein:vir:26 60 KLSNSMASLPLKMYEDY----------------KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI- 122 (412) T ss_pred HHHHhHhhCceeEeecc----------------ccccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECC- Confidence 99999765433332110 11122222233333333333445544444 4456888887765321 Q ss_pred CchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc-----eEEchhhEEEecCCcchhh Q lcl|Aclame:pro 210 DQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG-----TEVHATRLHTIVSRPVGDM 284 (695) Q Consensus 210 ~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~-----~~iH~SRli~~~~~~~p~~ 284 (695) .|.+..|.++.+..+++.... | +.+.+|++.. ..+.++-||||..... T Consensus 123 ----------------~G~~~~L~~l~~~~v~v~~~~--~------~~~~~y~~~~~~g~~~~~~~~evih~~~~~~--- 175 (412) T protein:vir:26 123 ----------------YHQPSKLFLLNPDVVEMLIEN--Q------SRELYYSIHAATGNKLIVHNMDMLHFKHIVA--- 175 (412) T ss_pred ----------------CCcEEEEEEEcCceeEEEEeC--C------CcEEEEEEEcCCceEEEEccccEEEeCCCCC--- Confidence 244667889998888764321 1 2344566652 3478899999976432 Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC Q lcl|Aclame:pro 285 LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA 364 (695) Q Consensus 285 ~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~ 364 (695) ...+.|.|.++.+.+.+.-...+.... +..-.....+-......++.+..+.+.++++. ...++.+.++++ + T Consensus 176 ---~~~~~G~s~i~~~~~~i~~~~a~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~--~~~~~g~~~vl~-~ 247 (412) T protein:vir:26 176 ---SNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQ--YYEENGGILFQE-P 247 (412) T ss_pred ---CCCcccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCCCCHHHHHHHHHHHHH--HhhcCCCeeecC-C Confidence 234579999988877665544443321 22111111111111233444433444444432 344555566776 4 Q ss_pred CceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHH Q lcl|Aclame:pro 365 TEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMI 442 (695) Q Consensus 365 ~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l 442 (695) +.+|+.++.+.. .+-+......++||++.+||-.+|-+.. ++-.++.|.-.+.||... |.|.+..+-+.+ T Consensus 248 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~-~~~~sn~e~~~~~f~~~~-------l~P~~~~ie~~l 319 (412) T protein:vir:26 248 GVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARS-NTNFAKNEELNRFYLQHT-------LLPIVKQYEEEF 319 (412) T ss_pred CceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHHHHHH-------HHHHHHHHHHHH Confidence 678998876644 3445555677899999999999886543 233344555556676654 788888876666 Q ss_pred HHHhcCCC--CCceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 443 QLSLFGAV--DPSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGV 518 (695) Q Consensus 443 ~~s~~g~~--~~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~ 518 (695) -+..+... .....|+ +..|...+.+++ +++..+++..|+++.+|+|..+...+..+............ T Consensus 320 n~kLl~~~~~~~~~~~~fd~~~l~~~d~~~~-------~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~- 391 (412) T protein:vir:26 320 NRKLLTKTDREKNRYFKFNVKSYLRADSATQ-------AEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYP- 391 (412) T ss_pred HhhcCCcccccCcceEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccc- Confidence 55444322 2234444 456666666665 45667778889999999999886555432111100000000 Q ss_pred hhhhhhhhhhhhhhhhhhhcccccccccCCCcc Q lcl|Aclame:pro 519 PADDDIDGVLTYVQRLAEGGDTGAPGGARAGAT 551 (695) Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (695) ......... ...+.-.. .... T Consensus 392 ---~~~~~~~~~-~~~gG~~n--------~~e~ 412 (412) T protein:vir:26 392 ---IDTPLELRK-SLKGGDKN--------VNES 412 (412) T ss_pred ---cccchhhcc-cccCCCCC--------cCCC Confidence 000000000 00000000 0000 No 44 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=99.44 E-value=4.2e-13 Score=88.43 Aligned_cols=415 Identities=11% Similarity=0.044 Sum_probs=200.9 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccch-hhhhhhccCCCCc-hHHHHHHHhCh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSM-DALSFVTSSGFPG-FPTLVLLAQLP 123 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~g-y~~~a~~~~~~ 123 (695) |.-...+...+ ++.....+.+ .|.+.....+.+..+ -.+.+.+. ....|..+.+-.| +-......+++ T Consensus 1 Mgl~d~~r~~~-~~~~~~~~~~----~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~ 70 (431) T protein:vir:10 1 MGLFDFIRREK-QPEAQARPHV----EPSFQASTPTTSIPG-----ETFEGLDDPRLKEYIRRGELNGGTGRETRALRNM 70 (431) T ss_pred CcchhhhhcCc-cccccccccc----ccccccccccccccc-----cccccccchHHHHhhccCccCcceechhhhhccH Confidence 43222222111 1111111111 011111111101100 01111111 1112222111111 11122233688 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHH-HhcCccceEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTV-IHDQAFGRAHP 202 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~-~~~Rl~G~~~i 202 (695) .+.++|+++++++-.-=+++.... + + .....+......|...=...--+..|.+.+ .+.-|+|-+++ T Consensus 71 ~V~~ci~~Ia~~iA~lp~~v~~~~--~----~------~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~ 138 (431) T protein:vir:10 71 AVLRCVTLISGTIGMLPMNLISSD--D----S------KQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMA 138 (431) T ss_pred HHHHHHHHHHHhhccCceEEEEec--C----c------eeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEE Confidence 899999999999865544442210 0 0 000011112222222222222334444443 44456788888 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE---cc--eEEchhhEEEec Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM---IG--TEVHATRLHTIV 277 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i---~~--~~iH~SRli~~~ 277 (695) +|.-+ + |....|.++++.++++.... | +.+ +|.+ .| ..+..+.||||. T Consensus 139 ~i~r~--~----------------g~~~~L~pl~~~~v~~~~~~--~------~~~-~y~~~~~~g~~~~~~~~dViHir 191 (431) T protein:vir:10 139 RIVWS--G----------------NRPIRLIPMDRGSAKGRLTS--T------WQI-VYDYTTPTGDKIELPAREVFHLR 191 (431) T ss_pred EEEEc--C----------------CceEEEEEEcCceeEEEEcC--C------CeE-EEEEEeCCceEEEEchhhEEEec Confidence 87532 1 23456788888887763221 1 222 2332 33 358889999987 Q ss_pred CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 278 SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRDN 355 (695) Q Consensus 278 ~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n 355 (695) +..+ ..+.|.|.++.+.+.|.....+......++...... +++++ ..++.+..+.+.++++..-..-+| T Consensus 192 ~~~~-------dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~ls~e~~~~~~~~~~~~~~g~~n 262 (431) T protein:vir:10 192 DLSI-------DGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEVP--KELSDNAYGRMKASVQENHTGSEN 262 (431) T ss_pred CcCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecC--CCCCHHHHHHHHHHHHHHhcCccc Confidence 6432 245799999999999998888888888877764443 44554 346655555566666544333334 Q ss_pred c-eeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 356 R-NILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 356 ~-~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~ 432 (695) . +.++++. +-+|++++.+... +-+.......+||.+-+||..+|-+.+ ++-.++.|.-...|+.. -|. T Consensus 263 ~g~~~vl~~-g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~-~~t~sn~eq~~~~f~~~-------tL~ 333 (431) T protein:vir:10 263 AGSWMLLEE-GATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDD-TSWGSGIEQLAIFFIQY-------GLS 333 (431) T ss_pred cCCceecCC-CceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCC-CCccccHHHHHHHHHHH-------HHH Confidence 4 4566764 6788888765432 334555567889999999999885432 23334444444556544 377 Q ss_pred HHHHHHHHHHHHHhcCCC-CCc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLSLFGAV-DPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 433 p~l~~l~~~l~~s~~g~~-~~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) |.+..+-+-+-+..+... ..+ +.|.+..|...+.+++++...+ .....++.|+++.+|+|..+...+..+.... T Consensus 334 P~~~~ie~~ln~~Ll~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~---~~~~G~~~g~lT~NE~R~~~gl~p~~~~~gD 410 (431) T protein:vir:10 334 HWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSK---ALGAGGQSPWMKQNEVREMLDLPRADDPVAD 410 (431) T ss_pred HHHHHHHHHHHhhccChhhcCCceEEEechhhhccCHHHHHHHHHH---HHhcccccCccCHHHHHHHhCCCCCCCcccc Confidence 877776665554443211 123 4455556666677666554432 2233345667999999998765443221110 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccc Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATA 552 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695) ... ...... ..+.... . + ... T Consensus 411 ---~~~-~p~n~~----------~~~~~~~--~-----p-~~~ 431 (431) T protein:vir:10 411 ---QLR-NPMTQK----------QKGSGDE--P-----P-ATT 431 (431) T ss_pred ---cee-cccccc----------cCCCCCC--C-----C-CCC Confidence 000 000000 0000000 0 0 000 No 45 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=99.44 E-value=4.3e-13 Score=88.41 Aligned_cols=436 Identities=14% Similarity=0.071 Sum_probs=201.2 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchH-HHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~-~~a~~~~~~~ 124 (695) |.-...+-....++.. +...... +.+.......+ .+.+..|-. .-....+++. T Consensus 1 Mg~~~~l~~~~~~~~~---------------------~~~~~~~----~~~~~~~~~~~-~~~~~~g~~v~~~~al~~~~ 54 (457) T protein:vir:62 1 MGFWSALFGRGHSPAL---------------------DAAEGRA----WEPYDPSIYNL-GATASSGERVTPHDALQVSA 54 (457) T ss_pred Cchhhhhhcccccccc---------------------ccccccc----cccchhhhhhc-cccccCCceechHHhhccHH Confidence 3222211111000000 0000000 00000000000 011111100 0122335778 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHH-HHHHHHHHHhhchHHHHHHHHHhcCccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQ-LKQINDEIERLRIRDAVRTTVIHDQAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~-~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~ 203 (695) +.++|+++|++.-.--+++...... .....+... ...+...-..+.-.+-+...+.+.-++|-++++ T Consensus 55 v~~~i~~ia~~iA~lp~~~~~~~~~------------~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~ 122 (457) T protein:vir:62 55 VFASVRLLSETIATLPLSTYSKRGG------------TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLA 122 (457) T ss_pred HHHHHHHHHHhHhhCceEEEEecCC------------ccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEE Confidence 8889999999876554443211100 001111111 111111111122233333444444567888877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c-----eEEchhhEEEe Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G-----TEVHATRLHTI 276 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~-----~~iH~SRli~~ 276 (695) |. .. .|.+..|.++.+..+++.... .+... +..-..|.+. | ..++++.||+| T Consensus 123 i~-~~-----------------~g~~~~l~~l~p~~v~v~~~~-~~~~~--~~~~~~y~~~~~g~~~~~~~~~~~eiih~ 181 (457) T protein:vir:62 123 VR-WA-----------------GPNIAGLDVLDPTKIHVHMVM-VDGLR--RKVFEAYDIDADGNEVLLGWFTPRDVLHI 181 (457) T ss_pred EE-eC-----------------CCcEEEEEEEcCcceEEEEec-cCCcc--ceeEEEEEEccCCceeEEEeeCccceEEe Confidence 63 21 124567888888888764332 12111 1111234443 2 35688999999 Q ss_pred cCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 277 VSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRD 354 (695) Q Consensus 277 ~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~ 354 (695) .+... ...+.|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.+.++....... T Consensus 182 r~~~~------~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~ls~e~~~~~~~~~~~~~~G~~ 253 (457) T protein:vir:62 182 PGMML------PGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP--GTMSEEGLARAREAWRAANSGVD 253 (457) T ss_pred cCCCC------CCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcC--CCCCHHHHHHHHHHHHHHhcCcc Confidence 76432 223579999999999998888888888887665444 445554 34555555556555555444333 Q ss_pred Cce-eEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCccccc--CcchHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 355 NRN-ILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSEGEIRVWYDYVRAYQRN 429 (695) Q Consensus 355 n~~-~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge~D~~nyyd~i~~~Qe~ 429 (695) |.+ +++++. +-+|+.++.+..+ +-+......+.||.+.+||-..| |....+-. +.-|.-...||..+ T Consensus 254 nag~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~sn~eq~~~~f~~~~------ 325 (457) T protein:vir:62 254 NAHRVALLTE-GAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMFS------ 325 (457) T ss_pred ccCcceecCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-CCCCCcccccchHHHHHHHHHHHH------ Confidence 433 567764 6789998876554 44666677889999999998766 76543322 22233445565543 Q ss_pred hhhHHHHHHHHHHHHHhcCCC-CCc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 430 ALQQLMNDVIVMIQLSLFGAV-DPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPY 506 (695) Q Consensus 430 ~l~p~l~~l~~~l~~s~~g~~-~~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~ 506 (695) |.|.+..+-..+-+..+... ... +.|.+..|...+.+++++ ...+++..|+++.+|+|..+...+..+. T Consensus 326 -l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~d~~~r~~-------~~~~~~~~G~~T~NE~R~~~gl~pi~~g 397 (457) T protein:vir:62 326 -LRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERME-------LWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) T ss_pred -HHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHH-------HHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 77877777665554443322 123 345555777777777644 5556778899999999998776554332 Q ss_pred hh-h-hhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCc Q lcl|Aclame:pro 507 AG-K-LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDA 573 (695) Q Consensus 507 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (695) .. . ........... ......... ..... ... ...............+...... ..... T Consensus 398 ~~D~~~~~~n~~~~~~----~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~~~~~d~~~~~-~~~~~ 457 (457) T protein:vir:62 398 LGEKYRVPLNLGEIGE----EPEPEPAPA-PPAID--PPA-EEPADDEEPDNAEGDPDEGETE-DDDDA 457 (457) T ss_pred Ccceeeeccccccccc----cccccccCC-CccCC--CCc-cCCCCCCCCCCCCCCCcccccc-ccccC Confidence 10 0 00000000000 000000000 00000 000 0000000000000000000000 00000 No 46 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=99.44 E-value=2.1e-13 Score=90.12 Aligned_cols=394 Identities=13% Similarity=0.120 Sum_probs=190.7 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.=.+-|.. +....|+..... + ....++...+..+|. .++.++.+ T Consensus 1 Mg~~~~f~~---k~~~~~~~~~~~------------------------~-----~~~~~~~~~~~~~~~---~~~~~~~V 45 (403) T protein:vir:80 1 MGLFNFFRR---KTRSEPTNAISW------------------------F-----LTQEAYDTLAIPGYT---RLSDNPEV 45 (403) T ss_pred Ccccccccc---cccccccchhhh------------------------h-----cccccccccccchhh---hhhhhHHH Confidence 222111110 000011000000 0 000111111222332 23456788 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCc-cceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQA-FGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl-~G~~~i~i 204 (695) .++|+++|+++-.--+++.....+ | ....+......|...=..+--+..|.+.+-+..+ .|.+..++ T Consensus 46 ~~~I~~ia~~iA~~p~~~~~~~~~-----g-------~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i 113 (403) T protein:vir:80 46 RMAVHKIAELISSMTIHLMQNTDN-----G-------DIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVV 113 (403) T ss_pred HHHHHHHHHhhhhCceEEEEecCC-----c-------eeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEE Confidence 999999999976544443211100 0 0011122222232222233344566666655443 44333333 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhh Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDM 284 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~ 284 (695) .+..+ ..|.+..|.++++..+++...+ + |. .+++.++.+-++-||||.....|+ T Consensus 114 ~~~~~---------------~~g~~~~L~~l~p~~v~~~~~~--~------g~--~~~y~~~~~~~~eiih~~~~~~~~- 167 (403) T protein:vir:80 114 FPKYT---------------TSGLIDELIPLAPSKVSFVDTD--T------GY--QIWYQGKAYNYDEVLHFIVNPDPE- 167 (403) T ss_pred EEEEc---------------CCCcEEEEEEEcCCeeEEEEcC--C------ce--EEEEeecccchhhEEEEeccCCCc- Confidence 33222 1345677888998888753211 1 11 233456777788899887433222 Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHH-HHHHHhcCCceeEEE Q lcl|Aclame:pro 285 LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRA-ELINRYRDNRNILFL 361 (695) Q Consensus 285 ~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~-~~~~~~~~n~~~~~l 361 (695) ..+.|.|.++.+.+.+.....+......++..... .+++++ ..+.....+++.+++ +.+....+..+..++ T Consensus 168 ----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 241 (403) T protein:vir:80 168 ----KPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVD--AATAELSSEEGRNAVFKKYLEASEAGQPWII 241 (403) T ss_pred ----CccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC--CCCChHHHHHHHHHHHHHHhhhhhcCCeeee Confidence 34579999999999988888777777776665443 344444 334444444444443 222233334455556 Q ss_pred EcCCceeEEEe-ccc--CChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHH Q lcl|Aclame:pro 362 DKATEEFFQFN-TPL--SGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDV 438 (695) Q Consensus 362 d~~~e~~~~~~-~~l--sgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l 438 (695) ..+..+++++. .+. +.+-+........||.+-+||..+| |. +..++....+||.. -|.|.+..+ T Consensus 242 ~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~-----~~~~~~~~~~f~~~-------~l~P~~~~i 308 (403) T protein:vir:80 242 PAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLL-GV-----GKYDKDEYNNFINS-------TILPIAKGI 308 (403) T ss_pred cccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHc-CC-----CCccHHHHHHHHHH-------HHHHHHHHH Confidence 44444444432 222 3445666677788999999998776 53 22233345666643 488988888 Q ss_pred HHHHHHHhcCCCCCceeEEec--cccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 439 IVMIQLSLFGAVDPSIKWQWN--ALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDP 516 (695) Q Consensus 439 ~~~l~~s~~g~~~~d~~~~f~--pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~ 516 (695) -+.+-+..+ .+.++.|+|+ .|...+.+++ ++...+++..|+++.+|+|..+...+..+........... T Consensus 309 e~~l~~kll--~~~~~~~~f~~~~ll~~d~~~~-------~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~~n~~ 379 (403) T protein:vir:80 309 EQELTRKLL--ISPDLYFKFNPRSLYAYDLKEL-------AEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVILENYI 379 (403) T ss_pred HHHHHHhcc--CCCCcEEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccccc Confidence 877655444 3456666664 4555555555 4566677889999999999987655433211100000000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 517 GVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) . . ...........+.... ...... T Consensus 380 p----l-~~~~~~~~~k~ge~~~--------~~~~~~ 403 (403) T protein:vir:80 380 P----L-DKIGDQNKLKGGEKGG--------ADGQTD 403 (403) T ss_pred c----h-hhccchhhccCCCCCC--------CCCCCC Confidence 0 0 0000000000000000 000000 No 47 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=99.43 E-value=4.3e-13 Score=88.35 Aligned_cols=409 Identities=9% Similarity=-0.005 Sum_probs=208.0 Q ss_pred cCCCCcccchhhccccc-ccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHH Q lcl|Aclame:pro 37 TAAQPVPADMGRRGALN-ALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPT 115 (695) Q Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~ 115 (695) |..|-++..|..|..+- ..++...... ..++.. +...+ +.. ..+|..+.+ + . T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~~f~~~~---------------~~~~~~--~~~~~----~~~--~~~~~~~~~-v---~ 53 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARLKSWFVGGR---------------LVTPNQ--GSQTG----PVS--AHGYLGDSS-I---N 53 (424) T ss_pred CCCCccccccCCCCchHHHHHhhccccc---------------cccccc--hhhcc----ccc--ccccccccc-c---c Confidence 55555555444433321 1111100000 000000 00000 000 001111111 0 1 Q ss_pred HHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hc Q lcl|Aclame:pro 116 LVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HD 194 (695) Q Consensus 116 ~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~ 194 (695) -....+++-+.++|++++++.-.--+++.....++ +...-..+......|...=...--...|.+.+. +- T Consensus 54 ~~~al~~~~v~~cv~~Ia~~iA~lp~~vy~~~~~~---------~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l 124 (424) T protein:vir:18 54 DERILQISTVWRCVSLISTLTACLPLDVFETDQND---------NRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQL 124 (424) T ss_pred HHHhhccHHHHHHHHHHHHhhccCceEEEEeccCC---------ceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHH Confidence 12234567788899999988754333321111000 000000111122223222222222333444444 44 Q ss_pred CccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEE--Ecc--eEEch Q lcl|Aclame:pro 195 QAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW--MIG--TEVHA 270 (695) Q Consensus 195 Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~--i~~--~~iH~ 270 (695) -++|-++++|.-+ ..|.+.+|.++++.++++... .+ +.+|+ +.| +.+++ T Consensus 125 ll~Gnay~~i~r~-----------------~~G~~~~L~~l~~~~v~v~~~--~~--------~~~y~~~~~g~~~~~~~ 177 (424) T protein:vir:18 125 CFYGNAYALVDRN-----------------SAGDVISLLPLQSANMDVKLV--GK--------KVVYRYQRDSEYADFSQ 177 (424) T ss_pred hhcCCeEEEEEEC-----------------CCCcEEEEEEecCcceEEEEc--CC--------eEEEEEEeCCeEEEecc Confidence 5688888776432 124567889999998876322 12 22344 444 47899 Q ss_pred hhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHH Q lcl|Aclame:pro 271 TRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAEL 348 (695) Q Consensus 271 SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~ 348 (695) +.||++.+... ..+.|.|.++.+.+.|.....+......++..... .+++++. ..++.+..+.+.++++. T Consensus 178 ~eVihir~~~~-------dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~-~~l~~e~~~~~~~~~~~ 249 (424) T protein:vir:18 178 KEIFHLKGFGF-------TGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGE-KVLTEQQRSQVEENFKE 249 (424) T ss_pred ccEEEecCcCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-cCCCHHHHHHHHHHHHH Confidence 99999975432 24579999999999998888888888887766443 3445432 23444444556666665 Q ss_pred HHHhcCCceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccccc--CcchHHHHHHHHHHH Q lcl|Aclame:pro 349 INRYRDNRNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSEGEIRVWYDYVR 424 (695) Q Consensus 349 ~~~~~~n~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge~D~~nyyd~i~ 424 (695) .....+..++++++. +-+|+.++.+.. .+-+......+.||.+-+||-.+| |...++-. ++-|.....||.. T Consensus 250 ~~~~~nag~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~~sn~eq~~~~f~~~-- 325 (424) T protein:vir:18 250 IAGGPVKKRLWILEA-GFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLV-GDVEKSTSWGSGIEQQNLGFLQY-- 325 (424) T ss_pred HhCCcccCCceeccC-CceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHh-CCCCCcccccccHHHHHHHHHHH-- Confidence 544444455777874 678988876644 345566777889999999997776 75543321 2224344556543 Q ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCC-Cc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 425 AYQRNALQQLMNDVIVMIQLSLFGAVD-PS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTE 501 (695) Q Consensus 425 ~~Qe~~l~p~l~~l~~~l~~s~~g~~~-~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~ 501 (695) -|.|.+.++-+-+-+..+.... .+ +.|.+..|...+.+++ ++...+++..|+++++|+|+.+... T Consensus 326 -----tl~P~~~~ie~~ln~~L~~~~~~~~~~~~fd~~~llr~d~~~r-------~~~~~~~~~~G~~T~NE~R~~~gl~ 393 (424) T protein:vir:18 326 -----TLQPYISRWENSIQRWLIPSKDVGRLHAEHNLDGLLRGDSASR-------AAFMKAMGESGLRTINEMRRTDNMP 393 (424) T ss_pred -----HHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCC Confidence 4788888877766554443211 23 4445566667777766 4455567889999999999987765 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 502 PDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAE 536 (695) Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (695) +..+.......... ...............+. T Consensus 394 pi~ggD~~~~~~n~----~~l~~~~~~~~~~~n~a 424 (424) T protein:vir:18 394 PLPGGDVAMRQAQY----VPITDLGTNKEPRNNGA 424 (424) T ss_pred CCCCcCeeeeccCc----cchhhhhccCCccccCC Confidence 54321110000000 00000000000000000 No 48 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=99.42 E-value=4.4e-13 Score=88.32 Aligned_cols=434 Identities=11% Similarity=0.065 Sum_probs=201.2 Q ss_pred HHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCc Q lcl|Aclame:pro 33 IATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG 112 (695) Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 112 (695) +.. .+||.+.+.....+.... .....+. ..+..++ +..-.| T Consensus 1 ~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~---------------g~~~~g 41 (454) T protein:vir:93 1 MWN----------LLRRTRKNQKSGRDVREA-GWTSLFQ-------------AVAEPFA---------------GAWQQG 41 (454) T ss_pred CCC----------ccccCcccccccccccch-hhhhhhh-------------hhhhhhc---------------chhhcC Confidence 000 112222111111111000 0000000 0000000 000000 Q ss_pred h-HHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHH Q lcl|Aclame:pro 113 F-PTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTV 191 (695) Q Consensus 113 y-~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~ 191 (695) - -......+++-+.++|+++|++.-.-=+++.....+ | .....+......|...=..+--...|.+.+ T Consensus 42 ~~v~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~-----g------~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l 110 (454) T protein:vir:93 42 VKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ-----G------IRRETRRGDIARLCRRPNAQQNRIQFFELW 110 (454) T ss_pred cccChHHhhccHHHHHHHHHHHHhhccCceEEEEeccC-----C------ccchhhhHHHHHHHhcCCCCCCHHHHHHHH Confidence 0 011122345678889999998876543443211100 0 000111111122222212222334555555 Q ss_pred H-hcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc------ Q lcl|Aclame:pro 192 I-HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI------ 264 (695) Q Consensus 192 ~-~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~------ 264 (695) . +--++|-+++++.-+. .|.+.+|.++++..+++.... | |. -.|.+. T Consensus 111 ~~~lll~Gna~~~i~r~~-----------------~G~~~~L~~i~~~~v~v~~~~--~------g~-~~y~~~~~~~~~ 164 (454) T protein:vir:93 111 LNAKLRHGNTVVLKIRNA-----------------RGQIKELRILDWNRVEPLVAD--D------GE-VFYRITPDRNCG 164 (454) T ss_pred HHHHhhcCceEEEEEECC-----------------CCcEEEEEEEcCcceEEEEcC--C------Cc-EEEEEEeccccc Confidence 5 3456888888766421 245678899999888764221 1 12 233332 Q ss_pred ---ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHH Q lcl|Aclame:pro 265 ---GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGAN 339 (695) Q Consensus 265 ---~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~ 339 (695) ...+..+.||||..... .....|.|.++.+.+.|.....+......++..... .+++++ ..++.+.. T Consensus 165 ~~~~~~~~~~eViH~k~~~~------~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~l~~e~~ 236 (454) T protein:vir:93 165 ITEAVTVPAREVIHDRFNCF------FHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIP--GSITEENA 236 (454) T ss_pred cceeEEecCcceEEeccCCC------CCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecC--CCCCHHHH Confidence 23577888988864322 234579999999999998888888777776655433 355665 34565555 Q ss_pred HHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHH Q lcl|Aclame:pro 340 VDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIR 417 (695) Q Consensus 340 ~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~ 417 (695) +.+.+.++......+..++.++++ +-+|++++.+..+ +-+......+.||.+.+||..+| |...++-.++.|.-.+ T Consensus 237 ~~~~~~~~~~~~g~n~g~~~vl~~-g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~sn~e~~~~ 314 (454) T protein:vir:93 237 KKLKSNWDSGYTGENAGKTAILSN-GAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKI-GVGQPPSSDNVEALEQ 314 (454) T ss_pred HHHHHHHHHHhcccccCCceeccC-CceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHc-CCCCCCcchhHHHHHH Confidence 667777766554443344677774 6789988876543 33555567789999999998876 5443333344444445 Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhh Q lcl|Aclame:pro 418 VWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVA 495 (695) Q Consensus 418 nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r 495 (695) .||.. -|.|.+..+-..+-+..+ .+.+ +.|.++.|...+.+++ ++...+++..|+++.+|+| T Consensus 315 ~f~~~-------~l~P~~~~ie~~ln~~L~--~~~~~~~~f~~~~ll~~D~~~r-------~~~~~~~~~~G~~T~NE~R 378 (454) T protein:vir:93 315 QYYSQ-------CLQTLIESIELLLDEALE--TGENESTEFDVTTLLRMDSERR-------MKTLGDAVKNTLLTPNEAR 378 (454) T ss_pred HHHHH-------HHHHHHHHHHHHHHHhhc--CCCCcEEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHH Confidence 55543 378888887666654433 2334 4444555656666555 4466677889999999999 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceE Q lcl|Aclame:pro 496 ARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAM 575 (695) Q Consensus 496 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (695) ..+...+..+....... ... .............................. .... .. ..... T Consensus 379 ~~~gl~pi~ggD~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~---~~----~~~e~--- 439 (454) T protein:vir:93 379 KRENLPPLAGGDALYLQ-----QQN-YSLEALSRRDAREDPFASSGKTASVPQAVA---ASDG---NK----AITET--- 439 (454) T ss_pred HHhCCCCCCCCCeeeec-----cCc-cchHhhhccCcccCCCCCCccCCCCCCCCC---CCCC---CC----CccCC--- Confidence 88766554322111000 000 000000000000000000000000000000 0000 00 00000 Q ss_pred EEEEEEEEcCCeE---EEEE Q lcl|Aclame:pro 576 RAAGAVYVVDGKV---LLMK 592 (695) Q Consensus 576 ~~~~~i~~~~~~v---LL~~ 592 (695) --+..+++ ++.| T Consensus 440 -----~~d~~~~~~~~~~~~ 454 (454) T protein:vir:93 440 -----EHDAVKAMFRGILKK 454 (454) T ss_pred -----ccchhhhhhhhhhcC Confidence 00000000 0000 No 49 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=99.42 E-value=4.2e-13 Score=88.44 Aligned_cols=397 Identities=12% Similarity=0.041 Sum_probs=198.2 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |+..+-+.-.+++- ..+...+.. ...+ ++. .|. +.+|.|... ..+.+++.+ T Consensus 1 ~~~~~~~~~~k~~~----------~~~~~~~~~--------~~~~--~~~-------~~~-~~~~~~v~~-~~a~~~~~v 51 (409) T protein:vir:94 1 MAKENIVTRIKKKL----------IDNWIDQSA--------SKLY--DFS-------PWK-NKSFWGVIN-NTLETNETI 51 (409) T ss_pred CcccccchhhhhHH----------hhhhhcCCc--------cccc--ccc-------ccc-Cccccccch-hhhhccHHH Confidence 55444333322110 000000000 0000 000 111 112333221 234567889 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~i 204 (695) .++|+++|+++-.-=+++.... ...+.+....|...=..+--+..|.+.+.+ .-++|-+++++ T Consensus 52 ~~~i~~Ia~~ia~lp~~~~~~~----------------~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i 115 (409) T protein:vir:94 52 FSAITKLSNSMASLPLKMYEDY----------------KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLI 115 (409) T ss_pred HHHHHHHHHhhhhCceeEeecc----------------cccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEE Confidence 9999999999876544442211 111222233333333333345556555443 45688888876 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc---ce--EEchhhEEEecCC Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---GT--EVHATRLHTIVSR 279 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---~~--~iH~SRli~~~~~ 279 (695) .-+. .|.+..|.++++..+++.... .+.+.+|.+. |. .+.++.||||... T Consensus 116 ~r~~-----------------~G~~~~L~~l~~~~v~v~~~~--------~~~~~~y~~~~~~g~~~~~~~~dvih~r~~ 170 (409) T protein:vir:94 116 ERDI-----------------YHQPSKLFLLNPDVVEMLIEN--------QSRELYYSIHAATGNKLIVHNMDMLHFKHI 170 (409) T ss_pred EECC-----------------CCcEEEEEEEcCceeEEEEeC--------CCcEEEEEEEcCCceEEEEccccEEEecCC Confidence 5321 245667889999888764221 1234456654 32 4788899999753 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeE Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNIL 359 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~ 359 (695) .. ...+.|.|.+..+.+.+.....+.... +..-.....+-......++.+..+.+.+.++ +.+.++.+++ T Consensus 171 ~~------~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~--~~~~~~g~~~ 240 (409) T protein:vir:94 171 VA------SNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVGKEKRQQVLEDFK--QYYEENGGIL 240 (409) T ss_pred CC------CCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCeeEEecCCCCCHHHHHHHHHHHH--HHhhcCCCee Confidence 22 234569999988877666544443321 1111111111111123344444444444443 2345566677 Q ss_pred EEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHH Q lcl|Aclame:pro 360 FLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMND 437 (695) Q Consensus 360 ~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~ 437 (695) +++ ++.+|+.++.+.. .+-+......++||.+-+||-.+|-+.. .+-.++-|.-.+.||..+ |.|.+.. T Consensus 241 vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~~sn~e~~~~~f~~~~-------l~P~~~~ 311 (409) T protein:vir:94 241 FQE-PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARS-NTNFAKNEELNRFYLQHT-------LLPIVKQ 311 (409) T ss_pred ecC-CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHHHHHH-------HHHHHHH Confidence 776 4678988876643 4455556677889999999999885433 222244454556666554 7888888 Q ss_pred HHHHHHHHhcCCC--CCceeEEec--cccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 438 VIVMIQLSLFGAV--DPSIKWQWN--ALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDAN 513 (695) Q Consensus 438 l~~~l~~s~~g~~--~~d~~~~f~--pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~ 513 (695) +-+.+-+..+... ..+..|+|+ .|...+.+++ +++..+++..|+++.+|+|..+...+..+........ T Consensus 312 ie~~ln~~Ll~~~~~~~~~~i~fd~~~ll~~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~ 384 (409) T protein:vir:94 312 YEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQ-------AEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISG 384 (409) T ss_pred HHHHHHHhhCCcccccCcceEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeEeecc Confidence 8777666554332 334555554 5555565555 5566778889999999999887654442211100000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCcc Q lcl|Aclame:pro 514 DDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGAT 551 (695) Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (695) .... ....... .....+.-.. .... T Consensus 385 n~~~----~~~~~~~-~~~~kGG~~n--------~~e~ 409 (409) T protein:vir:94 385 DLYP----IDTPLEL-RKSLKGGDKN--------VNES 409 (409) T ss_pred cccc----cccchhh-cccccCCCCC--------cCCC Confidence 0000 0000000 0000000000 0000 No 50 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=99.42 E-value=3.5e-13 Score=88.87 Aligned_cols=395 Identities=11% Similarity=-0.008 Sum_probs=195.5 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |..-+-+.-.+ +...-..+. ....+... + ..|... +|.|... ..+.+++.+ T Consensus 1 ~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~----------~-------~~~~~~-~~~~v~~-~~~~~~~~V 51 (409) T protein:vir:93 1 MAKENIVTRIK------KKLIDNWID----QSTSKLYD----------F-------SPWKNR-SFWGVIN-NTLETNETI 51 (409) T ss_pred CCccchhhhhh------hhhhhhhhc----cccccccc----------c-------ccccCc-cccccch-hhhhccHHH Confidence 33322211111 100000000 00000000 0 011111 2222211 235577888 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~i 204 (695) .++|+++|+++-.-=+++.... ...+......|...=...--+..|.+.+.+. -++|-+++++ T Consensus 52 ~~ci~~Ia~~ia~lp~~~~~~~----------------~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i 115 (409) T protein:vir:93 52 FSAITKLSNSMASLPLKMYEDY----------------KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLI 115 (409) T ss_pred HHHHHHHHHhhhhCceeEeecc----------------ccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEE Confidence 9999999999776544432111 1112222233333323333344554444443 5688888876 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc---c--eEEchhhEEEecCC Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---G--TEVHATRLHTIVSR 279 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---~--~~iH~SRli~~~~~ 279 (695) .-+. .|.+..|.++++..+++.... | +.+.+|.+. | ..+.++.||||.+. T Consensus 116 ~r~~-----------------~G~~~~L~~l~~~~v~~~~~~--~------~~~~~y~~~~~~g~~~~~~~~eVih~r~~ 170 (409) T protein:vir:93 116 ERDI-----------------YHQPSKLFLLNPDVVEMLIEN--Q------SRELYYSIHAATGNKLIVHNMDMLHFKHI 170 (409) T ss_pred EECC-----------------CCcEEEEEEEcCceeEEEEeC--C------CcEEEEEEEcCCceEEEEccccEEEeCCC Confidence 5422 234567888888887654321 1 234456664 3 35789999999764 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRN 357 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~ 357 (695) .. ...+.|.|.++.+.+.+.....+.... +..-... .+++.+ ..++.+..+.+.++++ +...++.+ T Consensus 171 ~~------~~~~~G~s~i~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~--~~l~~e~~~~~~~~~~--~~~~~~g~ 238 (409) T protein:vir:93 171 VA------SNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYG--SNVGKEKRQQVLEDFK--QYYEENGG 238 (409) T ss_pred CC------CCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecC--CCCCHHHHHHHHHHHH--HHhhcCCC Confidence 32 234579999988877766554443321 1111111 122222 2344443344444443 23455666 Q ss_pred eEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHH Q lcl|Aclame:pro 358 ILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLM 435 (695) Q Consensus 358 ~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l 435 (695) +++++. +.+|++++.+.. .+-+......+.||.+.+||-.+|-+.. .+-.++.|.-.+.||..+ |.|.+ T Consensus 239 ~~vl~~-g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~-~~~~sn~e~~~~~f~~~~-------l~P~~ 309 (409) T protein:vir:93 239 ILFQEP-GVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARS-NTNFAKNEELNRFYLQHT-------LLPIV 309 (409) T ss_pred eeecCC-CceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHHHHHH-------HHHHH Confidence 777764 678998876643 3445555678899999999999885533 233344565566777654 78888 Q ss_pred HHHHHHHHHHhcCC--CCCceeEEec--cccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 436 NDVIVMIQLSLFGA--VDPSIKWQWN--ALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 436 ~~l~~~l~~s~~g~--~~~d~~~~f~--pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) +.+-+.+-+..+.. ...++.|+|+ .|...+.+++ +++..+++..|+++.+|+|+.+...+..+...... T Consensus 310 ~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ll~~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~ 382 (409) T protein:vir:93 310 KQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQ-------AEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLI 382 (409) T ss_pred HHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeee Confidence 88766665544432 2334555554 5555565555 45667778899999999999886655432111000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCcc Q lcl|Aclame:pro 512 ANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGAT 551 (695) Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (695) . .................+.-.. .... T Consensus 383 ~-----~n~~~~~~~~~~~~~~~gG~~n--------~~e~ 409 (409) T protein:vir:93 383 S-----GDLYPIDTPLELRKSLKGGDKN--------VNES 409 (409) T ss_pred c-----ccccccccchhhcccccCCCCC--------cCCC Confidence 0 0000000000000000000000 0000 No 51 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=99.42 E-value=4e-13 Score=88.57 Aligned_cols=400 Identities=11% Similarity=0.062 Sum_probs=195.6 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..|..++.+....... +..+......+|. +.+...|.....+ +++-+.++|+++|.++-+-=+++... T Consensus 1 Mg~f~~~~~r~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~al-~~~~v~~cv~~Ia~~iA~~p~~~~~~ 69 (416) T protein:vir:45 1 MGIFYKNEKRDLQYNED---------DLQMMVQTLPGFQ-GTKLRQYKDIEAI-RHSDIFTAVMMIASDLARMPIRVTVN 69 (416) T ss_pred CCcccccccccccCCCc---------chhHHHHHhcccc-ccCccccchhhhh-cchHHHHHHHHHHHhhccCceEEecC Confidence 22222222111100000 0000000000110 0011112222222 33445567899998876654443211 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) . ....+......|...=..+--...|.+++.+. -++|-+++++.-++ T Consensus 70 ~---------------~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~----------------- 117 (416) T protein:vir:45 70 G---------------QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK----------------- 117 (416) T ss_pred c---------------cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECC----------------- Confidence 0 00111111122222222233344566666654 46888887765321 Q ss_pred CcceEEEEEecchhccccceecccccccccCCceeEEE--cc------eEEchhhEEEecCCcchhhhhcccCCCCchHH Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--IG------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMT 297 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i--~~------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l 297 (695) .|.+.+|.++++.++++.. | +.|.+.++.. .+ +.++++.||||...++ ..+.|.|.+ T Consensus 118 ~G~~~~L~~i~~~~v~v~~----~----~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~~-------d~~~G~s~i 182 (416) T protein:vir:45 118 TGEPMNLTFRKTSEIELKS----D----ARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSL-------DGINGLSLL 182 (416) T ss_pred CCcEEEEEEEcCceeEEEE----C----CCccEEEEEEEecCCCceeEEEEccccEEEeccCCC-------CCccccCHH Confidence 2456778899888886532 1 2344444432 21 4688999999976432 245799999 Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcch-HHHHHHHHHHHHHHh-cCCceeEEEEcCCceeEEEec Q lcl|Aclame:pro 298 QLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPG-ANVDLSMRAELINRY-RDNRNILFLDKATEEFFQFNT 373 (695) Q Consensus 298 ~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~-~~~~l~~r~~~~~~~-~~n~~~~~ld~~~e~~~~~~~ 373 (695) +.+.+.|.....+......++..... .+++++ ..+.++ ..+.+.++++..-.. ++..++++++. +.+|+.++. T Consensus 183 ~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~--~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~-g~~~~~l~~ 259 (416) T protein:vir:45 183 DTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK--GVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDE-SMTFDQLEV 259 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeC--CCCCCHHHHHHHHHHHHHHhcCccccCceeecCC-CceeEeccC Confidence 99999998888888877777666443 345554 233322 223444444433222 33345677774 678999876 Q ss_pred ccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC- Q lcl|Aclame:pro 374 PLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV- 450 (695) Q Consensus 374 ~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~- 450 (695) +.. .+-+......+.||++.+||..+| |...++.+ -+ +...+|. .-|.|.+..+-+.+-+..+..- T Consensus 260 ~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~--~~-~~~~~~~-------~~l~P~~~~ie~~ln~~l~~~~~ 328 (416) T protein:vir:45 260 DTEVLKLIRENKSSTREIAGVFGIPLHKF-GIETANMS--IT-DANLDYL-------STLKPYITCVCAELNFKFNDEYV 328 (416) T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHc-CCCCCCcc--HH-HHHHHHH-------HHHHHHHHHHHHHHhhhcccccc Confidence 643 344556667789999999999865 76554432 22 3333332 2377877776665544332211 Q ss_pred CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 451 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTY 530 (695) Q Consensus 451 ~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (695) ...+.|.+..|...+.+++ +++..+++..|+++.+|+|+.+...+..+........ .............. T Consensus 329 ~~~~~f~~~~l~~~D~~~~-------~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~---~~n~~~~~~~~~~~ 398 (416) T protein:vir:45 329 NREFKFDTTEIRVVDEKTQ-------AEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRV---DLNHVNIELVDEYQ 398 (416) T ss_pred CceEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEee---cccccccccccccC Confidence 1245666667777777766 4556677889999999999987655433322110000 00000000000000 Q ss_pred hhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 531 VQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) ........ .........+ T Consensus 399 ----~~~~~~~~-~~~kgGe~n~ 416 (416) T protein:vir:45 399 ----MNKSRATD-KKLKGGEENE 416 (416) T ss_pred ----cccccccc-cccCCCCCCC Confidence 00000000 0000000000 No 52 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=99.42 E-value=4e-13 Score=88.57 Aligned_cols=400 Identities=11% Similarity=0.062 Sum_probs=195.6 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..|..++.+....... +..+......+|. +.+...|.....+ +++-+.++|+++|.++-+-=+++... T Consensus 1 Mg~f~~~~~r~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~al-~~~~v~~cv~~Ia~~iA~~p~~~~~~ 69 (416) T protein:vir:81 1 MGIFYKNEKRDLQYNED---------DLQMMVQTLPGFQ-GTKLRQYKDIEAI-RHSDIFTAVMMIASDLARMPIRVTVN 69 (416) T ss_pred CCcccccccccccCCCc---------chhHHHHHhcccc-ccCccccchhhhh-cchHHHHHHHHHHHhhccCceEEecC Confidence 22222222111100000 0000000000110 0011112222222 33445567899998876654443211 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) . ....+......|...=..+--...|.+++.+. -++|-+++++.-++ T Consensus 70 ~---------------~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~----------------- 117 (416) T protein:vir:81 70 G---------------QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK----------------- 117 (416) T ss_pred c---------------cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECC----------------- Confidence 0 00111111122222222233344566666654 46888887765321 Q ss_pred CcceEEEEEecchhccccceecccccccccCCceeEEE--cc------eEEchhhEEEecCCcchhhhhcccCCCCchHH Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--IG------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMT 297 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i--~~------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l 297 (695) .|.+.+|.++++.++++.. | +.|.+.++.. .+ +.++++.||||...++ ..+.|.|.+ T Consensus 118 ~G~~~~L~~i~~~~v~v~~----~----~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~~~-------d~~~G~s~i 182 (416) T protein:vir:81 118 TGEPMNLTFRKTSEIELKS----D----ARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSL-------DGINGLSLL 182 (416) T ss_pred CCcEEEEEEEcCceeEEEE----C----CCccEEEEEEEecCCCceeEEEEccccEEEeccCCC-------CCccccCHH Confidence 2456778899888886532 1 2344444432 21 4688999999976432 245799999 Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcch-HHHHHHHHHHHHHHh-cCCceeEEEEcCCceeEEEec Q lcl|Aclame:pro 298 QLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPG-ANVDLSMRAELINRY-RDNRNILFLDKATEEFFQFNT 373 (695) Q Consensus 298 ~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~-~~~~l~~r~~~~~~~-~~n~~~~~ld~~~e~~~~~~~ 373 (695) +.+.+.|.....+......++..... .+++++ ..+.++ ..+.+.++++..-.. ++..++++++. +.+|+.++. T Consensus 183 ~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~--~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~-g~~~~~l~~ 259 (416) T protein:vir:81 183 DTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK--GVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDE-SMTFDQLEV 259 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeC--CCCCCHHHHHHHHHHHHHHhcCccccCceeecCC-CceeEeccC Confidence 99999998888888877777666443 345554 233322 223444444433222 33345677774 678999876 Q ss_pred ccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC- Q lcl|Aclame:pro 374 PLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV- 450 (695) Q Consensus 374 ~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~- 450 (695) +.. .+-+......+.||++.+||..+| |...++.+ -+ +...+|. .-|.|.+..+-+.+-+..+..- T Consensus 260 ~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~--~~-~~~~~~~-------~~l~P~~~~ie~~ln~~l~~~~~ 328 (416) T protein:vir:81 260 DTEVLKLIRENKSSTREIAGVFGIPLHKF-GIETANMS--IT-DANLDYL-------STLKPYITCVCAELNFKFNDEYV 328 (416) T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHc-CCCCCCcc--HH-HHHHHHH-------HHHHHHHHHHHHHHhhhcccccc Confidence 643 344556667789999999999865 76554432 22 3333332 2377877776665544332211 Q ss_pred CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 451 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTY 530 (695) Q Consensus 451 ~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (695) ...+.|.+..|...+.+++ +++..+++..|+++.+|+|+.+...+..+........ .............. T Consensus 329 ~~~~~f~~~~l~~~D~~~~-------~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~---~~n~~~~~~~~~~~ 398 (416) T protein:vir:81 329 NREFKFDTTEIRVVDEKTQ-------AEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRV---DLNHVNIELVDEYQ 398 (416) T ss_pred CceEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEee---cccccccccccccC Confidence 1245666667777777766 4556677889999999999987655433322110000 00000000000000 Q ss_pred hhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 531 VQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) ........ .........+ T Consensus 399 ----~~~~~~~~-~~~kgGe~n~ 416 (416) T protein:vir:81 399 ----MNKSRATD-KKLKGGEENE 416 (416) T ss_pred ----cccccccc-cccCCCCCCC Confidence 00000000 0000000000 No 53 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=99.41 E-value=5.6e-13 Score=87.77 Aligned_cols=433 Identities=12% Similarity=0.020 Sum_probs=200.8 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHH-HHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPT-LVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~-~a~~~~~~~ 124 (695) |.-..++-.+...+.. ..... ..+++.+..... +.+.+-.|... -....+++- T Consensus 1 Mg~~~~l~~r~~~~~~-----------------------~~~~~--~~~~~~~~~~~~-~~~~~~~g~~V~~~~al~~~~ 54 (457) T protein:vir:13 1 MGFWSALFGRGHSPAL-----------------------DGIEA--RAWEPYDPSIYN-LGAVAASGETVTPHDALQVSA 54 (457) T ss_pred Cchhhhhhcccccccc-----------------------ccccc--ccccccchHHHh-hcccccCCceechHHhhccHH Confidence 2221111000000000 00000 000111111111 11111112111 122335777 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh----hchHHHHHHHHHhcCccceE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER----LRIRDAVRTTVIHDQAFGRA 200 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~----l~~~~~~~~a~~~~Rl~G~~ 200 (695) +.++|+++|+++-.-=+++..... .+..+.....+...+.. +.-.+-+...+.+.-++|-+ T Consensus 55 V~~~v~~Ia~~iA~lp~~~~~~~~---------------~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna 119 (457) T protein:vir:13 55 VFASVRLLSETIATLPLSTYSKRG---------------GSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNA 119 (457) T ss_pred HHHHHHHHHHhhccCceEEEEecC---------------CcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCe Confidence 888999999887554333321100 00000001112222221 22223344444445567888 Q ss_pred EEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c-----eEEchhhE Q lcl|Aclame:pro 201 HPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G-----TEVHATRL 273 (695) Q Consensus 201 ~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~-----~~iH~SRl 273 (695) +++|. . ++ |.+..|.++++.++++..... +.. .+.....|.+. + ..++++.| T Consensus 120 ~~~i~-~-~~----------------g~~~~l~~l~p~~v~v~~~~~-~~~--~~~~~~~y~~~~~~~~~~~~~~~~~di 178 (457) T protein:vir:13 120 FLAVR-W-QG----------------PNIVGLDVLDPTKIHVHMVMV-DGL--RRKVFEAYDIDADGNEVLLGWFTPRDV 178 (457) T ss_pred EEEEE-e-cC----------------CcEEEEEEEccCceEEEEecC-CCc--cceeEEEEEEecCCceeeEEeeCccce Confidence 87753 2 11 234567888888887653321 211 11112234443 2 24688999 Q ss_pred EEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHH Q lcl|Aclame:pro 274 HTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINR 351 (695) Q Consensus 274 i~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~ 351 (695) |++..... ...+.|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.+.++.... T Consensus 179 ih~~~~~~------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~ls~e~~~~~~~~~~~~~~ 250 (457) T protein:vir:13 179 LHIPGMML------PGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVP--GTMSEEGLARAREAWRAANS 250 (457) T ss_pred EEecCCCC------CCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC--CCCCHHHHHHHHHHHHHHhc Confidence 99876432 123579999999999998888888888877766444 344544 35555555666666655544 Q ss_pred hcCC-ceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccC-c-chHHHHHHHHHHHHH Q lcl|Aclame:pro 352 YRDN-RNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNA-S-SEGEIRVWYDYVRAY 426 (695) Q Consensus 352 ~~~n-~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glna-t-ge~D~~nyyd~i~~~ 426 (695) ..+| .+.++++ ++-+|+.++.+..+ +-+......+.||.+.+||-.+| |....+-.. | -|.....||.. T Consensus 251 g~~nag~~~vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~~~~sn~eq~~~~f~~~---- 324 (457) T protein:vir:13 251 GVDNAHRVALLT-EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLI-SDATNSTSWGSGLAEQNIAFTMF---- 324 (457) T ss_pred CccccCcceecC-CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-CCCCCcccccchHHHHHHHHHHH---- Confidence 4344 4456676 46789998876544 34566677889999999998876 765433221 1 23333445443 Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCCC-Cc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhh Q lcl|Aclame:pro 427 QRNALQQLMNDVIVMIQLSLFGAVD-PS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPD 503 (695) Q Consensus 427 Qe~~l~p~l~~l~~~l~~s~~g~~~-~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~ 503 (695) -|.|.++++-+-+-+..+.... .. +.|.+..|...+.++++ +...+++..|+++.+|+|..+...+. T Consensus 325 ---tl~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~D~~~r~-------~~~~~~~~~G~~T~NE~R~~~gl~Pi 394 (457) T protein:vir:13 325 ---SLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERM-------ELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) T ss_pred ---HHHHHHHHHHHHHHHhhcCccccCceeEEeechhhhccCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 4788877776666555443322 22 44555577676776664 45566778999999999988766544 Q ss_pred hhhh-hhh-hhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEE Q lcl|Aclame:pro 504 GPYA-GKL-DANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAV 581 (695) Q Consensus 504 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 581 (695) .+.. ... ................... .......................... ... T Consensus 395 ~~g~~d~~~~~~n~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~d~~~~---~~~-------------- 451 (457) T protein:vir:13 395 PDGLGEKYRVPLNLGEVGEEPEPEPAPA------PPAIEPPAEEPDEEPEPEGKPDDEGA---TEE-------------- 451 (457) T ss_pred CCCcccceeeccccccccccccccccCC------CCCCCCCccccCCCCCCCCCCccccC---CCC-------------- Confidence 3221 000 0000000000000000000 00000000000000000000000000 000 Q ss_pred EEcCCe Q lcl|Aclame:pro 582 YVVDGK 587 (695) Q Consensus 582 ~~~~~~ 587 (695) ..+++- T Consensus 452 ~~~~~~ 457 (457) T protein:vir:13 452 DDEDDA 457 (457) T ss_pred cccccC Confidence 000000 No 54 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=99.41 E-value=1.3e-12 Score=85.84 Aligned_cols=405 Identities=12% Similarity=-0.007 Sum_probs=197.5 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCc-hHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG-FPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g-y~~~a~~~~~~~ 124 (695) |.-+-.+........ .+.+ +.. ...++.. .+-.| +-.-....+++- T Consensus 1 ~~~~r~~~~~~~~~~----~~~~--------------~~~-~~~~g~~--------------~s~~~~~vt~~~al~~~~ 47 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQ----MSAG--------------GWV-SALLGSS--------------RSDSGQVVTPASALALTV 47 (419) T ss_pred Ccccccccccccccc----cCcc--------------hhh-HHhhcCC--------------CccCCcccchHHhhccHH Confidence 322211111100000 0000 000 0000000 00000 001112235677 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccC-CHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTS-DGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHP 202 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~-~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i 202 (695) +.++|+++|++.-.-=+++.....++ .... +......|...=...--+..|.+.+.+. -++|-+++ T Consensus 48 v~~~v~~ia~~iA~lp~~~~~~~~~~------------~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~ 115 (419) T protein:vir:14 48 LQNCVTLLAESIAQLPIELYERSGED------------RKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYS 115 (419) T ss_pred HHHHHHHHHHhhccCceEEEEecCCc------------cccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEE Confidence 88999999998754433322111100 0111 1122222222222223344455554444 45788887 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcce-EEchhhEEEecCCcc Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGT-EVHATRLHTIVSRPV 281 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~-~iH~SRli~~~~~~~ 281 (695) ++.-+. .|.+.+|.++++.+|++... .| +.+ +|++.+. .++.+-|+++.+... T Consensus 116 ~i~r~~-----------------~G~~~~l~pl~~~~v~v~~~--~~------~~~-~y~~~~~~~~~~~~i~h~~~~~~ 169 (419) T protein:vir:14 116 FIDRDS-----------------DGVIQGLYPLDNEAVTVMRG--SD------LKP-VYRVRGSDPMPQRLVHHVRWMSI 169 (419) T ss_pred EEEECC-----------------CCcEEEEEEecCceEEEEEC--CC------ceE-EEEEccCcccchhheeEecCcCC Confidence 765321 24567899999988876421 11 222 5666654 466666777765432 Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeech-H-HhhcchHHHHHHHHHHHHHHhcCC-c Q lcl|Aclame:pro 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDL-A-QALMPGANVDLSMRAELINRYRDN-R 356 (695) Q Consensus 282 p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~-~-~~l~~~~~~~l~~r~~~~~~~~~n-~ 356 (695) ..+.|.|.++.+.+.|.....+......++..... .+++++. . ..+..+..+.+.+.++.....-+| . T Consensus 170 -------dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~nag 242 (419) T protein:vir:14 170 -------NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITDGWNAKFGGSGNAK 242 (419) T ss_pred -------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccC Confidence 34679999999999998888888888887766443 2455542 1 222222333344444433223234 3 Q ss_pred eeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~ 434 (695) ++.++++ +-+|++++.+..+ +-+......+.||.+.+||-.+|-. ..++-.++-|.-.+.||..+ |.|. T Consensus 243 ~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~-~~~~t~s~~E~~~~~f~~~~-------L~P~ 313 (419) T protein:vir:14 243 KVALLQE-GMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNE-LERATFSNIEHQSLQFVIYT-------LLPW 313 (419) T ss_pred CceecCC-CceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcC-CCCCCcccHHHHHHHHHHHH-------HHHH Confidence 4567764 6789988866543 4455667788999999999988843 33343344455556666554 7888 Q ss_pred HHHHHHHHHHHhcCCC-CCceeEEe--ccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 435 MNDVIVMIQLSLFGAV-DPSIKWQW--NALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 435 l~~l~~~l~~s~~g~~-~~d~~~~f--~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) +..+-+.+-+..+-.. ..++.++| ..|...+.+++ +++..++++.|+++.+|+|..+...+..+...... T Consensus 314 ~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~r~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~ 386 (419) T protein:vir:14 314 VKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSR-------YAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLS 386 (419) T ss_pred HHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeee Confidence 8877666655433221 12344454 46656666665 55666788999999999998876554432111100 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccc Q lcl|Aclame:pro 512 ANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVK 564 (695) Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (695) .......... .. ..................+- . T Consensus 387 ~~n~~~~~~~-----~~------------~~~~~~~~~~~~~~e~~~~l---~ 419 (419) T protein:vir:14 387 PMNMVDASKP-----QQ------------LPVGKSEPTKAAIDEIGRIL---S 419 (419) T ss_pred cccccccccc-----cc------------ccCCCCCCccccccchhccc---C Confidence 0000000000 00 00000000000000000000 0 No 55 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=99.40 E-value=4.8e-13 Score=88.13 Aligned_cols=414 Identities=12% Similarity=0.085 Sum_probs=199.9 Q ss_pred CCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhh--ccCCCCchHHH Q lcl|Aclame:pro 39 AQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFV--TSSGFPGFPTL 116 (695) Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~gy~~~ 116 (695) -+|.+ -|..-++..+. ...+.+ +... +.. ..++.+.....+. ...+... -.. T Consensus 1 ~~~~~-~~~~~~~~~~~----~~~~~~-~~~~-------~~~------------~~~~~~~~~~~~~~~~s~~g~~-v~~ 54 (432) T protein:vir:10 1 MPDEK-KLGLLGQLKAM----FVPPDP-VDIG-------GGQ------------TFTPVNATARDLGIIISDTGAA-VNA 54 (432) T ss_pred CCCCc-ccchhhhhHhh----cCCccc-cccc-------ccc------------ccccCcchhhhhcccccccCcc-cch Confidence 22221 13332221111 111111 0000 000 0000010000000 0001111 111 Q ss_pred HHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcC Q lcl|Aclame:pro 117 VLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQ 195 (695) Q Consensus 117 a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~R 195 (695) ..+.+++.+.++|+++|++.-.-=+++.-...+ |. ....+......|..+=...--+..|.+.+. .-- T Consensus 55 ~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~-----g~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~ll 123 (432) T protein:vir:10 55 DAIMRLDAVAACVKLVSQAIAAMPLTMYMRTPD-----GR------KEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLL 123 (432) T ss_pred hhhhcchHHHHHHHHHHHhhhhCceeEEEecCC-----Cc------ccccccHHHHHHHhcccccCCHHHHHHHHHHHHh Confidence 234467888999999999876543332111000 00 001112222333333223333444544444 335 Q ss_pred ccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE---cc--eEEch Q lcl|Aclame:pro 196 AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM---IG--TEVHA 270 (695) Q Consensus 196 l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i---~~--~~iH~ 270 (695) |+|-+++++.-. + |.+..|.++++.++++.. |. .|.+ .|++ +| ..++. T Consensus 124 l~Gnay~~~~~~-~-----------------g~~~~L~~l~~~~v~v~~----~~----~g~~-~y~~~~~~g~~~~~~~ 176 (432) T protein:vir:10 124 LDGTAYVRKVVT-D-----------------GRIESLQYLANDRLTITT----DT----KGNT-AYRYRRTDGQMIDIPK 176 (432) T ss_pred hcCCeEEEEEec-C-----------------CcEEEEEEEcCCceEEEE----cC----CCcE-EEEEEecCceEEEEcC Confidence 688887765421 1 235678888888887642 21 1222 3332 34 36889 Q ss_pred hhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHH Q lcl|Aclame:pro 271 TRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAEL 348 (695) Q Consensus 271 SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~ 348 (695) +.|+|+.+.++ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.+++ T Consensus 177 ~~iih~~~~~~-------dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~--~~l~~e~~~~~~~~~-- 245 (432) T protein:vir:10 177 QQIWKIMGYSL-------DGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQID--RFLTDDQYDSFAKKV-- 245 (432) T ss_pred ccEEEecCCCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecC--CCCCHHHHHHHHHHH-- Confidence 99999876533 24569999999999998888777777776554322 344554 345544444454444 Q ss_pred HHHhcCCceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcc---hHHHHHHHHHH Q lcl|Aclame:pro 349 INRYRDNRNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASS---EGEIRVWYDYV 423 (695) Q Consensus 349 ~~~~~~n~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatg---e~D~~nyyd~i 423 (695) ....+..++++++. +.+|++++.+..+ +-+......++||.+.+||-.+| |....|-.+++ |.-...||.. T Consensus 246 -~~~~nag~~~vl~~-g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~l-g~~~~~t~~~~sn~e~~~~~f~~~- 321 (432) T protein:vir:10 246 -SGSVEAGRAPLLEG-GMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMI-GHSSAGTTSWGSGIESQQLGFLSM- 321 (432) T ss_pred -hhhhhCCCceecCC-CceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHc-CCccCCcccccchHHHHHHHHHHH- Confidence 33445566788874 6789999876543 44556778889999999999877 65544433322 3334455533 Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhcCCCC-CceeEEe--ccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 424 RAYQRNALQQLMNDVIVMIQLSLFGAVD-PSIKWQW--NALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNT 500 (695) Q Consensus 424 ~~~Qe~~l~p~l~~l~~~l~~s~~g~~~-~d~~~~f--~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~ 500 (695) -|.|.+..+-+-+-+..+.... ..+.|+| ..|...+.++++ +...+++..|+++.+|+|..+.. T Consensus 322 ------tl~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~ll~~d~~~r~-------~~~~~~~~~G~~T~NE~R~~~gl 388 (432) T protein:vir:10 322 ------TLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARS-------SYYSQLVNNGLMTRDEAREIEGL 388 (432) T ss_pred ------HHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHH-------HHHHHHHhCCCCCHHHHHHHhCC Confidence 3677777776666554443221 2344444 466666666664 45666788899999999998766 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhh Q lcl|Aclame:pro 501 EPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNA 561 (695) Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (695) .+..+...... ............ .... ............... .. T Consensus 389 ppi~g~~~~~~------~~~~~~pl~~~~---~~~~------~~~~~~~~~~~~~~~--~~ 432 (432) T protein:vir:10 389 PKLGGNAAVLT------VQSAMVPLDSIG---LQAS------PEPASGLGNQQQDKV--SK 432 (432) T ss_pred CCCCCCcceEe------ecCcccchhhhc---ccCC------CCCCCCCCCcccccc--cC Confidence 55432211100 000000000000 0000 000000000000000 00 No 56 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=99.40 E-value=1.2e-12 Score=85.92 Aligned_cols=409 Identities=10% Similarity=-0.012 Sum_probs=205.7 Q ss_pred cCCCCcccchhhcc-cccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHH Q lcl|Aclame:pro 37 TAAQPVPADMGRRG-ALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPT 115 (695) Q Consensus 37 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~ 115 (695) |..|-++-...-+. -.+..++.-.. .-...+.. ++..+ +.. ..++..+... . T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~~~~~---------------~~~~~~~~--~~~~~----~~~--~~~~~~~~~v----~ 53 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARLQSWFVG---------------GRLVTPNQ--GSQTG----PVS--AHGHLGDSSI----N 53 (424) T ss_pred CCCCcceEeecCCCchHHHHHhhhcc---------------cccccccc--ccccc----ccc--cccccccccc----c Confidence 33333322211111 11111100000 00000000 00000 000 0001100000 1 Q ss_pred HHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hc Q lcl|Aclame:pro 116 LVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HD 194 (695) Q Consensus 116 ~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~ 194 (695) -....+++-+.++|+++|++.-.--+++.....++ -. .....+....+.|...=...--...|.+.+. +- T Consensus 54 ~~~al~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~~-----~~----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l 124 (424) T protein:vir:18 54 DERILQISTVWRCVSLISTLTACLPLDVFETDQND-----NR----KKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQL 124 (424) T ss_pred HHHhhccHHHHHHHHHHHHhhccCceEEEEeecCC-----ce----eeeccccHHHHHHhhccCCCCCHHHHHHHHHHHH Confidence 12334567788899999988654333321111000 00 0000011122223222222222334444444 34 Q ss_pred CccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeE--EEcc--eEEch Q lcl|Aclame:pro 195 QAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTW--WMIG--TEVHA 270 (695) Q Consensus 195 Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y--~i~~--~~iH~ 270 (695) -++|-+++++.-+. .|.+.+|.++++..|++... .+ +..| .+.| ..+.+ T Consensus 125 ll~Gnay~~i~r~~-----------------~G~~~~L~pl~~~~V~v~~~--~~--------~~~y~~~~~g~~~~~~~ 177 (424) T protein:vir:18 125 CFYGNAYALVDRNS-----------------AGDVISLLPLQSANMDVKLV--GK--------KVVYRYQRDSEYADFSQ 177 (424) T ss_pred hhcCCeEEEEEECC-----------------CCcEEEEEEecCcceEEEEc--CC--------eEEEEEEeCCeEEEecc Confidence 46888888765321 24567889999998876321 12 2233 4444 36888 Q ss_pred hhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHH Q lcl|Aclame:pro 271 TRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAEL 348 (695) Q Consensus 271 SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~ 348 (695) +.||||.+... ....|.|.++.+.+.|.....+......++...... +++++. ..++.+..+.+.++++. T Consensus 178 ~eIih~r~~~~-------dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~-~~l~~e~~~~~~~~~~~ 249 (424) T protein:vir:18 178 KEIFHLKGFGF-------TGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGE-KVLTEQQRSQVEENFKE 249 (424) T ss_pred ccEEEecCcCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCC-cCCCHHHHHHHHHHHHH Confidence 99999876432 245799999999999998888888888877765433 444431 23455555567777766 Q ss_pred HHHhcCCceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccccc--CcchHHHHHHHHHHH Q lcl|Aclame:pro 349 INRYRDNRNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSEGEIRVWYDYVR 424 (695) Q Consensus 349 ~~~~~~n~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge~D~~nyyd~i~ 424 (695) .....+..++.+++. +-+|++++.+.. .+-+......+.||.+-+||-.+| |....+-. +.-|.....||.. T Consensus 250 ~~~g~nag~~~vl~~-g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~~sn~eq~~~~f~~~-- 325 (424) T protein:vir:18 250 IAGGPVKKRLWILEA-GFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLV-GDVEKSTSWGSGIEQQNLGFLQY-- 325 (424) T ss_pred HhCCcccCCceeccC-CceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCcccccccHHHHHHHHHHH-- Confidence 554554555778874 678988877643 344566677889999999998877 65433321 2234445566543 Q ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCC-Cc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 425 AYQRNALQQLMNDVIVMIQLSLFGAVD-PS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTE 501 (695) Q Consensus 425 ~~Qe~~l~p~l~~l~~~l~~s~~g~~~-~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~ 501 (695) -|.|.+.++-+.+-+..+.... .. +.|.+..|...+.+++ ++...+++..|+++.+|+|..+... T Consensus 326 -----tl~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~llr~d~~~r-------~~~~~~~~~~G~~T~NE~R~~~gl~ 393 (424) T protein:vir:18 326 -----TLQPYISRWENSIQRWLIPAKDVGRIHAEHNLDGLLRGDSASR-------AAFMKAMGEAGLRTINEMRRTDNLP 393 (424) T ss_pred -----HHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCC Confidence 4788888887766555443221 23 4455556666666666 4555667889999999999987665 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 502 PDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAE 536 (695) Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (695) +..+............ .........-...+. T Consensus 394 pi~gGD~~~~~~n~~~----l~~~~~~~~p~~~ga 424 (424) T protein:vir:18 394 PLPGGDVAMRQSQYVP----ITDLGTNKEPRNNGA 424 (424) T ss_pred CCCCcCeeeeccCccc----hHhhhccCCCccCCC Confidence 5432111100000000 000000000000000 No 57 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=99.39 E-value=8.2e-13 Score=86.84 Aligned_cols=395 Identities=12% Similarity=0.012 Sum_probs=184.4 Q ss_pred HHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhc------------ Q lcl|Aclame:pro 115 TLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLR------------ 182 (695) Q Consensus 115 ~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~------------ 182 (695) ++.+...|+.++++|++.|++...-.+.+......+ .........+.+...+...+ T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~------------~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~ 68 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAE------------DPDRDGEQYERVWDFWFGDDSNWQVGPMESER 68 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcc------------cccchhhhhhhHHHHhhccCCCccccchhhHh Confidence 333444589999999999999987777664321110 00111122333333332221 Q ss_pred --hHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee-------------- Q lcl|Aclame:pro 183 --IRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN-------------- 246 (695) Q Consensus 183 --~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~-------------- 246 (695) ..+-+...+.+..++|-+++++.-+.. |.+..|.++++..|++.... T Consensus 69 ~t~~~~~~~~~~~l~l~Gn~~i~~~r~~~-----------------G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~ 131 (467) T protein:vir:31 69 ATATNVLQTAWTDYEAIGWLTIEILTQTD-----------------GTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYF 131 (467) T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEECCC-----------------CcEEEEEEeCCceeEeeeecceeEeecCCceeeE Confidence 123344555566678999987764322 23345556665555442110 Q ss_pred --cccccccccCC---ceeEEE------cceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH Q lcl|Aclame:pro 247 --SINPVADDFYK---PSTWWM------IGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 315 (695) Q Consensus 247 --~~dp~s~~yg~---P~~y~i------~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~ 315 (695) ..++...++.. +.++.+ .+..+..+.||||.... +...++|.|-++.+.+.|.....+..... T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diih~r~~~------~~~~~~G~s~~~~~~~~i~~~~~~~~~~~ 205 (467) T protein:vir:31 132 GVAGDRYQTNGNGDLDPVFVDADDGSTGTSVSNPANELIFKRNHS------PLYPHYGAPDIIPAVKTIRGDSAAQDYNI 205 (467) T ss_pred EeccccceeecccceeeeeeeeccccccceeEeccccEEEecCCC------CCCCcccccHHHHHHHHHHHHHHHHHHHH Confidence 00011111100 111111 12357788999887542 23456899999999999887777766666 Q ss_pred HHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHH-----------hcCCcee-EEEEcCCceeEEEeccc------ Q lcl|Aclame:pro 316 DIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINR-----------YRDNRNI-LFLDKATEEFFQFNTPL------ 375 (695) Q Consensus 316 ~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~-----------~~~n~~~-~~ld~~~e~~~~~~~~l------ 375 (695) .++..... .++++.. ..++.+..+.+.+.++-... ...|.+. .++. .+.++..+...+ T Consensus 206 ~~f~ng~~p~gil~~~~-~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~-~g~~~~~~~~~~~~ls~~ 283 (467) T protein:vir:31 206 DFFENDGVPRIAIIVKG-AELTEKGREEMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLA-DGADRSDVEIRLEPLTVG 283 (467) T ss_pred HHHhccCCCceEEEecC-cCCCHHHHHHHHHHHHhhhcchhhhhhhhhccccccccccccc-CCCcccccceeEEecccc Confidence 65544332 2334321 22344444444444332110 1123333 3333 344444443322 Q ss_pred ----CChHHHHHHHHHHHHhhhcCCceeeeccCc-ccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC- Q lcl|Aclame:pro 376 ----SGLDALQAQAQEQMSAVSHIPLIKLLGITP-TGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA- 449 (695) Q Consensus 376 ----sgl~~~~~~~~~~iaaas~iP~t~L~G~sp-~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~- 449 (695) +.+.+......++||++.+||-.+| |... +..+++.|....+|+..+ |.|.+..+-+.+-...+.. T Consensus 284 ~~~d~qf~e~~~~~~~~Ia~~fgVpp~~l-G~~~~~~~~s~~e~~~~~f~~~~-------l~P~~~~ie~~ln~~l~~~~ 355 (467) T protein:vir:31 284 IDEEASFLEFRGRNEHDILKVHDVPPVIA-GVVESGAFSTDAEEQRKEFAEET-------IQPKQHDFGELLYELVHKQG 355 (467) T ss_pred ChhhHHHHHHHHHHHHHHHHHhCCCHHHc-ccCCCCCcccCHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcchh Confidence 2234555667778999999998765 7653 334344455566666443 7787777766554443321 Q ss_pred -CCC--ceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 450 -VDP--SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDG 526 (695) Q Consensus 450 -~~~--d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (695) ... .+.|.+..+...+.+++++ +...++..|+++.+|+|..+...+.... .... ........ T Consensus 356 ~~~~~~~i~f~~~~l~~~d~~~~~~-------~~~~~~~~G~~T~NE~R~~~Gl~pi~d~------~~~~--~~~~~~~~ 420 (467) T protein:vir:31 356 LDAPDWTIEFELAKPDTKLQDVEIA-------SQRVQAMQGLLTVNELRDEFGFEPFPEE------HVYG--GETLVAEV 420 (467) T ss_pred hccCCceEEEecchhhccCHHHHHH-------HHHHHHhCCCcCHHHHHHHhCCCCCCcc------cccC--Cccccccc Confidence 112 3556667777777777654 4555778899999999988765432110 0000 00000000 Q ss_pred hhhhhhhhhhhcccccccccCCCccc----hhhhhhhhhccccccccccCc Q lcl|Aclame:pro 527 VLTYVQRLAEGGDTGAPGGARAGATA----PPTVANVNANVKPREAGAQDA 573 (695) Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 573 (695) ...... ................... ............... ... T Consensus 421 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 467 (467) T protein:vir:31 421 TGGSGP-GGGIGDQIEQLVEDRADEIIDSYQADLETEQLIEIGAN---ADS 467 (467) T ss_pred ccccCC-CCcccCcCCCCCCCcccchHhhhhhccccchhhhhccc---cCC Confidence 000000 0000000000000000000 000000000000000 000 No 58 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=99.39 E-value=3.9e-13 Score=88.58 Aligned_cols=395 Identities=12% Similarity=0.034 Sum_probs=197.3 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |..-+-+.-.+.. .+.+...+.. ...+ ++. .|. +.+|.|+..- .+.+++.+ T Consensus 1 ~~~~~~~~~~k~~----------~~~~~~~~~~--------~~~~--~~~-------~~~-~~~~~~v~~~-~a~~~~~V 51 (409) T protein:vir:96 1 MAKENIVTRIKKK----------LIDNWIDQSA--------SKLY--DFS-------PWK-NKSFWGVINN-TLETNETI 51 (409) T ss_pred CccccchhhhhhH----------Hhhhhhcccc--------cccc--ccc-------ccc-Cccccccchh-hHhhhHHH Confidence 4443332222210 0000010000 0000 000 111 1233333322 34467788 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~i 204 (695) .++|++.|+++-.-=+++.... ...+......|...=...--...|.+.+.+ --++|-+++++ T Consensus 52 ~~ci~~ia~~ia~lp~~~~~~~----------------~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i 115 (409) T protein:vir:96 52 FSAITKLSNSMASLPLKMYEDY----------------KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLI 115 (409) T ss_pred HHHHHHHHHhhhhCceEEeecc----------------cccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEE Confidence 8999999988765433332110 111222233333322223334445444443 35688888776 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc---c--eEEchhhEEEecCC Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---G--TEVHATRLHTIVSR 279 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---~--~~iH~SRli~~~~~ 279 (695) .-+. .|.+.+|.++++..+++...+ .+.+.+|.+. | ..+.++.||||... T Consensus 116 ~r~~-----------------~G~~~~L~~l~~~~v~v~~~~--------~~~~~~y~~~~~~g~~~~~~~~evih~r~~ 170 (409) T protein:vir:96 116 ERDI-----------------YHQPSKLFLLNPDVVEMLIEN--------QSRELYYSIHAATGNKLIVHNMDMLHFKHI 170 (409) T ss_pred EECC-----------------CCcEEEEEEEcCceeEEEEeC--------CCcEEEEEEEcCCceEEEEccccEEEeCCC Confidence 5321 234567889998888754221 1233455553 3 35778889998754 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRN 357 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~ 357 (695) .. ...+.|.|.+..+.+.+.....+.... +..-.+. .+++.+ ..++.+..+.+.++++ +.+.++.+ T Consensus 171 ~~------~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~--~~l~~e~~~~~~~~~~--~~~~n~g~ 238 (409) T protein:vir:96 171 VA------SNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYG--SNVSTEKRQQVLEDFK--QYYEENGG 238 (409) T ss_pred CC------CCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEecC--CCCCHHHHHHHHHHHH--HHhhcCCC Confidence 32 234579999988877765444333321 1111111 122222 3444444444544443 23455666 Q ss_pred eEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHH Q lcl|Aclame:pro 358 ILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLM 435 (695) Q Consensus 358 ~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l 435 (695) .++++ ++.+|+.++.+.. .+-+......++||.+.+||-.+|-+.. .+-.++.|...+.||... |.|.+ T Consensus 239 ~~vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~~s~~e~~~~~f~~~~-------l~P~~ 309 (409) T protein:vir:96 239 ILFQE-PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARS-NTNFAKNEELNRFYLQHT-------LLPIV 309 (409) T ss_pred eeecC-CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHHHHHH-------HHHHH Confidence 77776 4778999887654 3445556677889999999999884432 222244565566776654 88888 Q ss_pred HHHHHHHHHHhcCCC--CCceeEEec--cccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 436 NDVIVMIQLSLFGAV--DPSIKWQWN--ALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 436 ~~l~~~l~~s~~g~~--~~d~~~~f~--pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) ..+-+.+-+..+... ..++.|+|+ .|...+.+++ +++..++++.|+++.+|+|..+...+..+...... T Consensus 310 ~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d~~~~-------~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~~~ 382 (409) T protein:vir:96 310 KQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQ-------AEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLI 382 (409) T ss_pred HHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHH-------HHHHHHHHhCCCCCHHHHHHHhCCCCCCCcceeee Confidence 888777766555322 234556654 5555566555 55667788999999999999876554422111000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCcc Q lcl|Aclame:pro 512 ANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGAT 551 (695) Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (695) ....... ...........+.-.... .. T Consensus 383 ~~n~~~~-----~~~~~~~~~~~gG~~n~~--------e~ 409 (409) T protein:vir:96 383 SGDLYPI-----DTPLELRKSLKGGDKNVN--------ES 409 (409) T ss_pred ccccccc-----ccchhhcccccCCCCCcC--------CC Confidence 0000000 000000000000000000 00 No 59 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=99.38 E-value=2.2e-12 Score=84.49 Aligned_cols=407 Identities=14% Similarity=0.021 Sum_probs=205.5 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchH-HHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~-~~a~~~~~~~ 124 (695) |+....+...+ .+...+.. .. ...++ .+. +. +-.|-. .-....+++- T Consensus 1 m~~~~~~~~~~-~~~s~~~~----w~-----------~~~~~--~~~---~~-----------~~~g~~vt~~~al~~~~ 48 (421) T protein:vir:10 1 MFIPQMFEGKK-RSVSGGGF----WE-----------AMLGG--VRS---SH-----------SKAGVMITPETALALSA 48 (421) T ss_pred CCCcchhcccc-cccCcchh----hH-----------HHhhh--hcc---Cc-----------ccCCceechHHhhccHH Confidence 55544443332 11111100 00 00000 000 00 000000 0012235677 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~ 203 (695) +.++|+++|++.-.-=+++.....+. +. ..-.+......|...=...--+..|.+.+. +--++|-++++ T Consensus 49 v~~~i~~Ia~~iA~lp~~~~~~~~~g----~~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~ 118 (421) T protein:vir:10 49 VRACVTLLAESVAQLPVELYRRDKNG----GR------QRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSI 118 (421) T ss_pred HHHHHHHHHHhhccCceEEEEEcCCC----ce------eecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEE Confidence 88899999988654333321111000 00 000111222333333233333444555544 44468888877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE--cceEEchhhEEEecCCcc Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--IGTEVHATRLHTIVSRPV 281 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i--~~~~iH~SRli~~~~~~~ 281 (695) +.-++ .|.+..|.++++.++++.. |+ .|.+ +|++ .|+.+..+-||++..... T Consensus 119 i~r~~-----------------~G~~~~L~~l~~~~v~v~~----~~----~g~~-~y~~~~~g~~~~~~eiih~~~~~~ 172 (421) T protein:vir:10 119 IDRDG-----------------KGYPKELIPINPKKVIVLK----GP----DGMP-YYEIPEIGETLPMRMMHHVKVFSL 172 (421) T ss_pred EEEcC-----------------CCcEEEEEEecCceEEEEE----CC----CceE-EEEEcCCCcEEchhhEEEecCcCC Confidence 65322 2446778999998887632 21 2333 3445 467888999999876542 Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeech--HHhhcchHHHHHHHHHHHHHHhcCC-c Q lcl|Aclame:pro 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDL--AQALMPGANVDLSMRAELINRYRDN-R 356 (695) Q Consensus 282 p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~--~~~l~~~~~~~l~~r~~~~~~~~~n-~ 356 (695) ..+.|.|.++.+.+.+.....+......++..... .+++++. ...++.+..+.+.++++..-..-.| . T Consensus 173 -------d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~ 245 (421) T protein:vir:10 173 -------DGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKIDQLLAKWTDRYSGINNMF 245 (421) T ss_pred -------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHHHHHHHHHHHHhcCccccC Confidence 24579999999999998888888888887766332 3556542 2233444334455555443222233 4 Q ss_pred eeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~ 434 (695) ++++++. +-+|++++.+.. .+-+......+.||.+-+||-.+| |...++-.++-|.-...||.. -|.|. T Consensus 246 ~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~sn~e~~~~~f~~~-------tl~P~ 316 (421) T protein:vir:10 246 SVALLQE-GMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMV-QMLAKATNNNIEHQGLQFVMY-------TLLAW 316 (421) T ss_pred cceecCC-CceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHc-CCCcCCccccHHHHHHHHHHH-------HHHHH Confidence 5677775 678999887654 344555677889999999997776 544444445556555666654 37787 Q ss_pred HHHHHHHHHHHhcCCC-CCc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 435 MNDVIVMIQLSLFGAV-DPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 435 l~~l~~~l~~s~~g~~-~~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) +..+-..+-+..+..- ..+ +.|....|...+.++++ +...+++..|+++.+|+|..+...+..+...... T Consensus 317 ~~~ie~~ln~kL~~~~~~~~~~v~fd~~~l~~~d~~~~~-------~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~ 389 (421) T protein:vir:10 317 LKRHEGALQRDLLLPSERRDLYIEFNVSGLLRGDQKSRY-------ESYALGRQWGWLSVNDIRRMENLPPIAGGDKYLT 389 (421) T ss_pred HHHHHHHHhhhccCccccCCeEEEEechhhhccCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeee Confidence 7776665554333211 123 44555577677777764 4666677899999999998876654432211100 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhc Q lcl|Aclame:pro 512 ANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNAN 562 (695) Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (695) ...... ..... .+... ........... ..... T Consensus 390 ~~n~~~---~~~~~--------~~~~~------~~~~~~~e~d~--~~~~~ 421 (421) T protein:vir:10 390 PLNMVD---SAQII--------PGDKK------PTAQQMAEIDT--ILSRT 421 (421) T ss_pred cccccc---ccccc--------cCCCC------cccccCccccc--ccccC Confidence 000000 00000 00000 00000000000 00000 No 60 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=99.38 E-value=1.5e-12 Score=85.38 Aligned_cols=421 Identities=12% Similarity=0.044 Sum_probs=201.9 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCc-hHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG-FPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g-y~~~a~~~~~~~ 124 (695) |- --+.+.+.....+...+ +..+.....+....+ |....+-.| +-.-..+.+++- T Consensus 1 ~~------~~~~~~~~~~~~~~~~~--~g~~~s~~~~~~~~~----------------~~~~~~~~g~~v~~~~al~~~~ 56 (437) T protein:vir:10 1 MK------QGKQRALGRIKSSFLKW--LGVPISLTDGSFWSA----------------WGGMGSSSGETVTADSALQLSA 56 (437) T ss_pred CC------cchhhhhhhhHHhhhhh--cCCcccCCchhHHHh----------------hcccccCCCceechHhhhccHH Confidence 11 00001111111111111 111111000000000 100001111 001122346788 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~ 203 (695) +..+|+++|++.-.-=+++.....+ |- .....+......|...=..+--...|.+.+... -|+|-++++ T Consensus 57 v~~ci~~Ia~~ia~lp~~~~~~~~~-----g~-----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~ 126 (437) T protein:vir:10 57 VWSCVRLIAETIATLPLNLYQTKPD-----GT-----RVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYAR 126 (437) T ss_pred HHHHHHHHHHHHhhCceeEEEEcCC-----Cc-----eeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEE Confidence 8999999999876543332111000 00 000111222222332222233344455555544 468888877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeE--EEcc--eEEchhhEEEecCC Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTW--WMIG--TEVHATRLHTIVSR 279 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y--~i~~--~~iH~SRli~~~~~ 279 (695) +.-+ + |.+++|.++.+..+++.... | |...++ .+.| +.+.++.||||.+. T Consensus 127 i~r~--~----------------g~~~~L~~l~p~~v~i~~~~--~------g~~~y~~~~~~g~~~~~~~~dIih~r~~ 180 (437) T protein:vir:10 127 KLRS--A----------------GVLIGLELMLPQRTTVKRLT--S------GALQYTYRNVDGTVSTLAEDDVFHVRGF 180 (437) T ss_pred EEec--C----------------CcEEEEEEEcCcceEEEECC--C------CeEEEEEEecCceEEEEccccEEEecCc Confidence 6431 1 34567888888888764321 1 122121 2234 35788999998754 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCC-c Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDN-R 356 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n-~ 356 (695) .+ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..++.+..+.+.++++.....-.| . T Consensus 181 ~~-------d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~nag 251 (437) T protein:vir:10 181 SL-------DGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTD--QILQKEKRAEIRTDLAEQFGGAMQAG 251 (437) T ss_pred CC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcC--CCCCHHHHHHHHHHHHHHhcCccccC Confidence 32 23579999999999998888888888887766443 344444 446655556666666543332233 4 Q ss_pred eeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccc--ccCcchHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTG--LNASSEGEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~G--lnatge~D~~nyyd~i~~~Qe~~l~ 432 (695) ++++++. +-+|++++.+.. .+-+......+.||.+-+||-.+| |....+ .++.-|...+.||... |. T Consensus 252 ~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~~sn~e~~~~~f~~~t-------l~ 322 (437) T protein:vir:10 252 KTMVLEA-GMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMV-GHSEKSTSWGTGIEQQTLGFLTFT-------LR 322 (437) T ss_pred cceeccC-CceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCcccccchHHHHHHHHHHHH-------HH Confidence 4677764 678999876643 345666677889999999998887 654322 1122244455566443 78 Q ss_pred HHHHHHHHHHHHHhcCCCC-Cc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLSLFGAVD-PS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 433 p~l~~l~~~l~~s~~g~~~-~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) |.+..+-.-+-+..+.... .. +.|.+..|...+.++++ ++..+++..|+++++|+|+.+...+..+.... T Consensus 323 P~~~~ie~~l~~kll~~~e~~~~~~~fd~~~ll~~d~~~r~-------~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~~~ 395 (437) T protein:vir:10 323 PWLTRIEQAARRSLLRPGERDQFYAEFSVEGLLRADSAGRA-------AFYSTMTQNGLMTRDECRAKENLPPMGGNAAV 395 (437) T ss_pred HHHHHHHHHHHhhccCccccCceEEEEechhhhccCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCCcce Confidence 8888777666654442211 12 44555566666666664 45666788899999999988766554332111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhh Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (695) ... ........................ .... ..........+ T Consensus 396 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~e~ 437 (437) T protein:vir:10 396 LTV------QSALLPIDKLGEHTTATAAQDALK-AWLY--QEEKTRATQER 437 (437) T ss_pred Eee------cCcccchhhccCcCCCcchhcccc-ccCC--CCCCCCccccC Confidence 000 000000000000000000000000 0000 00000000000 No 61 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=99.38 E-value=5.3e-13 Score=87.90 Aligned_cols=371 Identities=11% Similarity=0.011 Sum_probs=188.0 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.-..+...... .+..+.+.+..+ ... .+.... .+-..+.. ....+++-+ T Consensus 1 M~~f~~~~~~~~----~~~~~~~~~~~~-----------~~~-~~~~~~-------------~~~~~v~~-~~al~~~~v 50 (386) T protein:vir:49 1 MPIFNITNLATE----SPPINQESFFDI-----------ADS-DFLASL-------------NSSEWVSA-ENALKNSDL 50 (386) T ss_pred CchhhhhccCCC----Ccccchhhhhhh-----------hhc-cccccc-------------cCCceech-hhhhccHHH Confidence 433322211110 000101000000 000 000000 00000111 112356788 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~i 204 (695) .++|+++|+++-.--+++..... +.|...-..+.-...|.+.+.+.. ++|-++++| T Consensus 51 ~~~i~~ia~~ia~~p~~~~~~~~-----------------------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i 107 (386) T protein:vir:49 51 FSIISQLSNDLATAKITTSRKQL-----------------------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYR 107 (386) T ss_pred HHHHHHHHHHhhhCceeeccchh-----------------------hhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEE Confidence 88999999998765555432211 112222223334556666666555 478888776 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--------ceEEchhhEEEe Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--------GTEVHATRLHTI 276 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--------~~~iH~SRli~~ 276 (695) .-+.+ |.+.+|.++++.++++...+. +...+|.+. .+.++.+.|||| T Consensus 108 ~r~~~-----------------g~~~~l~~i~~~~v~v~~~~~--------~~~~~y~~~~~~~~~~~~~~~~~~evih~ 162 (386) T protein:vir:49 108 WRNDN-----------------GRDMKWEYLRPSQVSFNRLDN--------QNGLYYNITFDDPHIAPKQHVPQNDILHF 162 (386) T ss_pred EECCC-----------------CcEEEEEEecCceeEEEEcCC--------CceEEEEEEEcCccccceeEEccccEEEe Confidence 54322 335578888888887653321 122344442 246889999999 Q ss_pred cCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 277 VSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRD 354 (695) Q Consensus 277 ~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~ 354 (695) ..... ...+.|.|.++.+.+.|.....+......++...... +++++ ..+..+....+.+ .++.+.. T Consensus 163 ~~~~~------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~--~~~~~~~~~~~~~---~~~~~~~ 231 (386) T protein:vir:49 163 RLLSV------DGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIK--GGGLLDFKTKVSR---SRQAMKQ 231 (386) T ss_pred cCCCC------CCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeC--CCCChHHHHHHHH---HHHHhcc Confidence 76432 1235799999999999999998888888877764443 34443 2333333333322 2333444 Q ss_pred Cc-eeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 355 NR-NILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNAL 431 (695) Q Consensus 355 n~-~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l 431 (695) |. ++++++ ++.+|+.++.+... +-+......++||++.+||-.+|-| +.++- ++++ ..+.|| ...+ T Consensus 232 n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~~~-~~~~-~~~~~~-------~~~i 300 (386) T protein:vir:49 232 MQGGPLVLD-DLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGG-DGDQQ-SSLE-MIYNIY-------FKSV 300 (386) T ss_pred CCCCceecC-CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCcc-chHH-HHHHHH-------HHHH Confidence 44 456676 46789998866543 4556788889999999999988844 32222 3333 334443 2234 Q ss_pred hHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 432 QQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 432 ~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) +|.+..+...+-+.. + .++.+....+...+..++ +.....++..|++++.|+++.+....... ..... T Consensus 301 ~~~l~~i~~~~~~~l-~---~~~~~~~~~~~~~d~~~~-------~~~~~~l~~~g~~t~nE~r~~l~~~~~~~-~~~~~ 368 (386) T protein:vir:49 301 SRYLRPFVSEMSKKL-S---CEVDVDISPAVDPTGSNY-------ISLINSMVKSGTLAQNQGLYILQQAEILP-KELPD 368 (386) T ss_pred HHHHHHHHHHHHHHh-c---chhcccchhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHHhhCCCCC-CcCcc Confidence 555555544443322 1 234444455555555444 34455678889999999998765332111 00000 Q ss_pred hhhhhhhhhh-hhhhhhh Q lcl|Aclame:pro 512 ANDDPGVPAD-DDIDGVL 528 (695) Q Consensus 512 ~~~~~~~~~~-~~~~~~~ 528 (695) .......... ....... T Consensus 369 ~~~~~~~~~~gGd~~~~~ 386 (386) T protein:vir:49 369 GKNPNRTSLKGGEINEQD 386 (386) T ss_pred hhccCCCCCCCCCCCCCC Confidence 0000000000 0000000 No 62 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=99.38 E-value=2.9e-13 Score=89.35 Aligned_cols=476 Identities=10% Similarity=0.028 Sum_probs=212.8 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |-=-+ ......|...- ..+ .....|+... .....+. ...+. ....+.+++-+ T Consensus 1 ~~~~~------~~~~~~p~~~e-------~~~-------~~~~~~~~~~--~~~~~~~--~~~~~----~~~~a~~~~~V 52 (518) T protein:vir:10 1 MLLAN------GQTLSAPAMAE-------LSP-------QMQDSYYYAP--AVGMQLE--RQFSL----YGGIYKNQPWV 52 (518) T ss_pred CcccC------ceeecCchhhh-------hhh-------hhhccccccc--ccceecc--cccch----hhHHHhhhHHH Confidence 11100 01111111000 000 0000000000 0000000 00000 01245678899 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~i 204 (695) .++|+++|++.-.--+++.-...+ .....+......|...=...--...|.+.+.. --++|-+++++ T Consensus 53 ~acV~~IA~~iA~lpl~l~~~~~~------------~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i 120 (518) T protein:vir:10 53 RTVIAKRAQALARLPVKCMFTSGD------------TETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAI 120 (518) T ss_pred HHHHHHHHHhhccCceEEEEEcCC------------CceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEE Confidence 999999999975433333211100 00111111111122111122223345544443 44688888876 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc------c--eEEchhhEEEe Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI------G--TEVHATRLHTI 276 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~------~--~~iH~SRli~~ 276 (695) .-+. .|.+..|.++++.+|++.... + -+. ..|.+. + ..+..+.|||| T Consensus 121 ~r~~-----------------~G~~~~L~~l~p~~v~v~~~~--~-----~~~-~~y~~~~~~~~~~~~~~~~~~eViHi 175 (518) T protein:vir:10 121 QKNK-----------------SGTPEKLMPMHPSRVAIKRNS--R-----TGR-YEYYFQAGAGVGTQLVSFADDEVVPI 175 (518) T ss_pred EECC-----------------CCcEEEEEEECCCceEEEEcC--C-----CCE-EEEEEEecCCccceEEEecCCcEEEe Confidence 5321 244677889999888764321 1 112 233332 1 24677889988 Q ss_pred cCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 277 VSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRD 354 (695) Q Consensus 277 ~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~ 354 (695) .+... ...+.|.|.++.+.+.|.....+......++...... +++++ ..++.+..+.+.+.++.....-. T Consensus 176 r~~s~------dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~--~~ls~e~~~~~k~~~~~~~~G~~ 247 (518) T protein:vir:10 176 RFFNP------DGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHE--KRLSEAAQQRLREQFDRAHSGSS 247 (518) T ss_pred cCCCC------CcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecC--CCCCHHHHHHHHHHHHHHhcCcc Confidence 75432 1224699999999999999988888888877765543 44544 34555555556555554433333 Q ss_pred Cce-eEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 355 NRN-ILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNAL 431 (695) Q Consensus 355 n~~-~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l 431 (695) |.+ +.+++ ++.+|+.++.+..+ +-+......+.||.+.+||-.+| |...++-.++.|.-..+||..+ | T Consensus 248 nag~v~vL~-~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~l-g~~~~~t~sn~eq~~~~f~~~t-------L 318 (518) T protein:vir:10 248 NTGKTMVVE-EGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIV-HILDRATFSNISAQMRAFYRDT-------M 318 (518) T ss_pred ccCcceEcC-CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-ccCCCCCchhHHHHHHHHHHHH-------H Confidence 444 56676 47789888866443 44555667789999999998877 6554443344455566666543 7 Q ss_pred hHHHHHHHHHHHHHhcCCCCCceeEEe--ccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhh-hhh Q lcl|Aclame:pro 432 QQLMNDVIVMIQLSLFGAVDPSIKWQW--NALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGP-YAG 508 (695) Q Consensus 432 ~p~l~~l~~~l~~s~~g~~~~d~~~~f--~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~-~~~ 508 (695) .|.+..+-+.+-+..+-.....+.|+| ..|...+.+++ +++...++..|+++.+|+|..+...+... ..+ T Consensus 319 ~P~l~~ie~~ln~~L~~~~~~~~~~~fd~~~llr~D~~~r-------~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~~gD 391 (518) T protein:vir:10 319 AIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPDWEAK-------SESTQKMVNSGVATPNEGREIMGLPRSDDPKAD 391 (518) T ss_pred HHHHHHHHHHHHHhhcccccCCceEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCC Confidence 777777666554433222222344444 46666666555 55667778899999999998776443221 100 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEE-EEEEEEEcCCe Q lcl|Aclame:pro 509 KLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMR-AAGAVYVVDGK 587 (695) Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 587 (695) . ....... ........-...+.... .. ............. . .........+... -..-=.-.+.+ T Consensus 392 ~----~~~~~n~--~pl~~~~~~~~~g~~~~---~~-~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (518) T protein:vir:10 392 E----LYANSAL--QPLGATPDGAVEGEEAP---AP-KRPASTPVASLDQ---S-PPTSVPGLSPTNSDRSTDSGKTEPR 457 (518) T ss_pred e----eeecccc--eecccccccccCCCCCC---CC-CCCCccccccccc---c-ccccCCCCCcccccccccccccchh Confidence 0 0000000 00000000000000000 00 0000000000000 0 0000000000000 00000001112 Q ss_pred EEEEEeCC-----C-ceeCCcceeCCCCCHHHHHHH------------------HHHHhcCc Q lcl|Aclame:pro 588 VLLMKRPA-----G-DWGLPAGKVEGNETPEEAARR------------------ETREETGY 625 (695) Q Consensus 588 vLL~~r~~-----g-~W~lPGG~vE~gEs~~~aa~R------------------Ev~EEtGl 625 (695) .++ .++. + +-.+..|.+-.|.+++--+.. -+.|.-.- T Consensus 458 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (518) T protein:vir:10 458 RLM-QKPPPKESSPKHLRAVKGAMGRGKDIKGFALQLAEKYPDDLEDILLAVQLALAERKDN 518 (518) T ss_pred ccc-cCCCcccccchHHHHHHHHhhcCccchhHhhhhhhhcchhHHHHHHHHHHhhhhccCC Confidence 332 2221 1 223335555555554443332 22221111 No 63 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=99.37 E-value=2e-12 Score=84.71 Aligned_cols=408 Identities=12% Similarity=0.033 Sum_probs=198.6 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccc-ccccccccccccchhhhhhhccCCCCchHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRER-RAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~ 124 (695) |-.-= -+.-. .|.-..-.++++--+.+...|... .+....+. +...... |-.-....+++- T Consensus 1 ~~~~~--~~~~~----~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~---------~~~~~~~---~vs~~~al~~~~ 62 (424) T protein:vir:45 1 MLYCW--WAHWL----WPEGGRVLLDALFRSKSLENPSTPITGDAVDTD---------GLFRADV---YVSPETAMKLAA 62 (424) T ss_pred CeeEe--eecee----cCcchhHHHHhhccccCCCCCccccchhhhhhh---------ccccCCc---eechHHhhccHH Confidence 10000 00000 000111111111101111111000 00000000 0000000 101122335677 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~ 203 (695) +.++|+++|++.-.-=+++......+ . ....+......|...=...--...|.+.+. ..-++|-++++ T Consensus 63 v~~cv~~Ia~~iA~lp~~v~~~~~~~-----~------~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~ 131 (424) T protein:vir:45 63 VYSCIYVLSSSLAQMPLHVMRRHKGK-----V------EPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTW 131 (424) T ss_pred HHHHHHHHHHHHhhCceEEEEecCCc-----e------eecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEE Confidence 88999999988765444432111000 0 000111122223222222333344555444 33457888877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc----ceEEchhhEEEecCC Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI----GTEVHATRLHTIVSR 279 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~----~~~iH~SRli~~~~~ 279 (695) |.-+. .|.+.+|.++.+..++..... +. ..|.+. ...+.++.||||.+. T Consensus 132 i~r~~-----------------~G~~~~L~~l~~~~v~i~~~~---------~~-~~y~~~~~~~~~~~~~~eVih~r~~ 184 (424) T protein:vir:45 132 VKRNR-----------------RGEVISLDCCMPWETTLMNTG---------GR-YTYGLYNEYGAFAISPDDMIHIRAL 184 (424) T ss_pred EEEcC-----------------CCcEEEEEEecCceEEEEEcC---------Ce-EEEEEEecCceEEECcccEEEecCc Confidence 65321 244567888888777653211 11 244443 246889999999764 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHh-cCCc Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRY-RDNR 356 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~-~~n~ 356 (695) .. ..+.|.|.++.+.+.|.....+......+...... .+++++ ..++.+..+.+.+.++..... .+|. T Consensus 185 ~~-------d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~~n~ 255 (424) T protein:vir:45 185 GN-------NQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVK--SGLNKESWGWLKDQWQKASQALRRQE 255 (424) T ss_pred CC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeC--CCCCHHHHHHHHHHHHHHhccccccC Confidence 32 24569999999999999888888888887665443 344544 345555555666666543332 3454 Q ss_pred e-eEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhH Q lcl|Aclame:pro 357 N-ILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQ 433 (695) Q Consensus 357 ~-~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p 433 (695) | +++++. +-+|+.++.+..+ +-+......++||.+-+||-.+|-+ .-++-.++.|.-.+.|+.. -|.| T Consensus 256 g~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~~~~t~sn~eq~~~~f~~~-------tL~P 326 (424) T protein:vir:45 256 NKTMLLPA-DLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMIND-LEKATFSNISAQAIQFVRY-------TMMP 326 (424) T ss_pred CceeEcCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCCCcccHHHHHHHHHHH-------HHHH Confidence 4 667764 6788888876543 4466677888999999999988843 3333334445445555543 3777 Q ss_pred HHHHHHHHHHHHhcCC--CCCceeEE--eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 434 LMNDVIVMIQLSLFGA--VDPSIKWQ--WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 434 ~l~~l~~~l~~s~~g~--~~~d~~~~--f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) .+..+-+-+-+..+.. ...++.++ ...|...|.+++ ++...+++..|+++.+|+|..+...+..+.... T Consensus 327 ~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d~~~r-------~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~ 399 (424) T protein:vir:45 327 WVTNWEQELNRRLFTRAELAAGYYVRFNLTGLLRGTPQER-------AQFYHFAITDGWMSRNEARAFEDMNPVEGLDEM 399 (424) T ss_pred HHHHHHHHHHHhcCChhhhcCCcEEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee Confidence 7777766554444322 22344444 445656666665 456666888999999999987765543221111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhh Q lcl|Aclame:pro 510 LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPT 555 (695) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (695) .... ... .. .+. ............. T Consensus 400 ~~~~-----n~~--~~--------~~~------~~~~~~~~~~~~~ 424 (424) T protein:vir:45 400 LVSV-----NAA--NP--------AGD------FKPPKNDEGKTNE 424 (424) T ss_pred eecc-----ccc--cc--------ccc------cCCCCCCCCCCCC Confidence 0000 000 00 000 0000000000000 No 64 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=99.36 E-value=3.3e-13 Score=88.99 Aligned_cols=400 Identities=11% Similarity=0.009 Sum_probs=176.6 Q ss_pred CCCCcccccccc---cccccccccchhhhhhhccCC---CCch------HHHHHHHhChhhhhHhhcchHHHhhCCceee Q lcl|Aclame:pro 77 VSNYTPRERRAA---SYALDFNGTSMDALSFVTSSG---FPGF------PTLVLLAQLPEYRAMHEVLADECIRTWGEAI 144 (695) Q Consensus 77 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---f~gy------~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~ 144 (695) +..-+|...-.- .+. ...++....-.+|.+.. +.|. ........+...++|||..+.-++=+++++ T Consensus 1 ~~~~t~~~~~~~l~~~~~-~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~- 78 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRID-DGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV- 78 (456) T ss_pred CCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCChhhcCcccChhhchhhhhhhcchHHHHHHHHHhhhccCCeec- Confidence 111111110000 000 00000000001111110 0010 011111122344666666665555555443 Q ss_pred ccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccc Q lcl|Aclame:pro 145 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTV 224 (695) Q Consensus 145 ~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i 224 (695) .. +.+.+..+.+.+.+++-++.....++.+.+-.||.+++++..+.++... T Consensus 79 --------------~~----~~d~~~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~----------- 129 (456) T protein:vir:79 79 --------------GG----SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT----------- 129 (456) T ss_pred --------------CC----CCCccHHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCCCCceE----------- Confidence 22 1223334457777777778888899999998999999888775554321 Q ss_pred cCcceEEEEEecchhcccccee------------cccccc-c----ccCCceeEE---Ec------ce---EEchhhEE- Q lcl|Aclame:pro 225 PKGSFQGLRVVEPYWVTPNNYN------------SINPVA-D----DFYKPSTWW---MI------GT---EVHATRLH- 274 (695) Q Consensus 225 ~~g~l~~l~v~d~~~i~p~~~~------------~~dp~s-~----~yg~P~~y~---i~------~~---~iH~SRli- 274 (695) +.+++|.++.+...+ ..+... + -|..+..|. .. .. ..+..... T Consensus 130 -------i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (456) T protein:vir:79 130 -------ITADSPETMVVSVDPLQPWRIRSAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVP 202 (456) T ss_pred -------EEEeccceeEEEEcCCCCCceEEEEEEEEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceee Confidence 222233332221000 000000 0 011111110 00 00 00000000 Q ss_pred -----EecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhc--cceee-echHHhhcchHHHHHHHHH Q lcl|Aclame:pro 275 -----TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS--VSGIL-MDLAQALMPGANVDLSMRA 346 (695) Q Consensus 275 -----~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~--~~v~k-~~~~~~l~~~~~~~l~~r~ 346 (695) ++.| .+|-. +..|-.|.|.++.+.+.+.+++++.-.....+..++ +.++. .+.......... +.+ T Consensus 203 ~~~~~~~~~-~~pvv--~~~N~~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g----~~i 275 (456) T protein:vir:79 203 VGDAVVTGS-PPPVV--VYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENG----NAI 275 (456) T ss_pred cccccCCCC-ceeEE--EecCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccc----ccc Confidence 0101 11111 124567999999999999898887654433322222 22221 111110001101 112 Q ss_pred HHHHHhcCCcee-EEEEcCCceeEEE-ecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHH---HHHHH Q lcl|Aclame:pro 347 ELINRYRDNRNI-LFLDKATEEFFQF-NTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEI---RVWYD 421 (695) Q Consensus 347 ~~~~~~~~n~~~-~~ld~~~e~~~~~-~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~---~nyyd 421 (695) ...+..+...+. ..++ ++.++.++ .+++.+..+.+.....+|++.+++|...|-|.+. |.||+.=. ..... T Consensus 276 ~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~~~~~~---N~Sg~Al~~~~~~l~~ 351 (456) T protein:vir:79 276 DYASIFEAAPGALWELP-PGVDIWESQTNDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA---NQSAEGAHNIEKGFLF 351 (456) T ss_pred chhhhhhhhccccccCC-CCcceeeecccChHHHHHHHHHHHHHHHhhcCCChhHhccccc---CcHHHHHHHHHHHHHH Confidence 222222222233 3444 45666555 4777889999999999999999999999977542 45666332 33333 Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 422 YVRAYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNT 500 (695) Q Consensus 422 ~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~ 500 (695) .++.+ +..+++.|++++.+++.-. |.. ...+.+.|.|....+..+.|+. ..++...|.++...+...+.. T Consensus 352 k~~~~-~~~f~~~l~~~~~l~~~~~-g~~~~~~i~v~w~~~~~~s~~~~ada-------~~kl~~~G~~~~~~~~~~lg~ 422 (456) T protein:vir:79 352 KCEDR-LSIAKIGLEAILVKALQIE-GESVEDTVDVSFESPDRVTLGEKYSA-------ASLAKAAGESWASIRRNILNY 422 (456) T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhc-CCCccccceEEeCCCCCcCHHHHHHH-------HHHHHhcCCChHHHHHhcCCC Confidence 44443 4578999999999876543 433 3468899999988887776554 444455566666554443322 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccc Q lcl|Aclame:pro 501 EPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAP 543 (695) Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (695) ...- ................... ....+ ..-..+ T Consensus 423 ~~~~-----i~~~e~~r~~~e~~~~~~~--~~~~~--~~~~~~ 456 (456) T protein:vir:79 423 NADQ-----IKQDDLDRAREQITLFAGN--PVQRP--QEDGSR 456 (456) T ss_pred CHHH-----HHHHHHHHHHHHHHHHhhh--HhhcC--CCCCCC Confidence 1110 0000110111100000000 00000 000000 No 65 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=99.35 E-value=8.5e-12 Score=81.28 Aligned_cols=498 Identities=9% Similarity=-0.033 Sum_probs=219.0 Q ss_pred HHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhc Q lcl|Aclame:pro 27 LAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVT 106 (695) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (695) .|++..+-.|+. | .++.+...-+-.....-.+ |-.+.+|.........+...++..+. +|.. T Consensus 1 ~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~ 62 (535) T protein:vir:10 1 MAILKDLRNAFS-------L--SNKKSTSYIELGDYDKDIV----NKAIRPGRASARDTVDGIDIADGNVA-----GQYS 62 (535) T ss_pred ChhhHHHHHHHH-------h--hhhhhhhhHHHhhhhHHHH----HhhhhhhhhhhhccccccccccCCcc-----cccc Confidence 222222211110 1 0111111100000000000 11222222221111111111111111 1111 Q ss_pred cC---CCCchH-HHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCcccccc--ccccCC--HHHHHHHHHHH Q lcl|Aclame:pro 107 SS---GFPGFP-TLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGN--AASTSD--GDQLKQINDEI 178 (695) Q Consensus 107 ~~---~f~gy~-~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~--~~~~~~--~~~~~~i~~~~ 178 (695) .. ....|+ +++.+..+++++.++++.++..+.-. .+....+.. .++.+..- ...+.+ ......+...+ T Consensus 63 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~t~~~~va~~~--~i~~~s~~~--~~~~i~l~~~~~~~~~~~~~~~~~l~~lL 138 (535) T protein:vir:10 63 VASISDVLSTKKLLKAYADNDIVQAIIRTRTNQVLTYS--NPSRYNRNG--VGFKVELKDATKVMSKAQIKRAHEIEDFI 138 (535) T ss_pred cCccccccCHHHHHHHhccChhHHHHHHHHHHHHHHHH--HHHHHhccc--CcceeEEEeccCCCcchhhhhhhHHHHHH Confidence 11 123333 45667788999999998887755310 000000000 01111000 000101 11112233333 Q ss_pred H----hh----chHHHHHHHH-HhcCccceE-EEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecc Q lcl|Aclame:pro 179 E----RL----RIRDAVRTTV-IHDQAFGRA-HPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSI 248 (695) Q Consensus 179 ~----~l----~~~~~~~~a~-~~~Rl~G~~-~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~ 248 (695) . .+ ..+..|...+ ....++||. +++|.-+ ..|.+.+|.++++..|++.. T Consensus 139 ~~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~-----------------~~G~~~~L~~l~p~~V~v~~---- 197 (535) T protein:vir:10 139 YNTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIFKN-----------------DSNELDHFNAVDASKVVISY---- 197 (535) T ss_pred HhCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEEEC-----------------CCCcEEEEEEeCCceeEEEE---- Confidence 2 11 1333444443 334556654 5444321 12456788999999887642 Q ss_pred cccccccCCceeEEEc----ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc- Q lcl|Aclame:pro 249 NPVADDFYKPSTWWMI----GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV- 323 (695) Q Consensus 249 dp~s~~yg~P~~y~i~----~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~- 323 (695) |+...+ +-+.+|++. +..+.++.||+|...+.++.. ..+.|.|.++.+.+.|.....+......++..... T Consensus 198 d~~~~~-~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~---~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng~~p 273 (535) T protein:vir:10 198 SPRSKD-QPRKFEQFVSETKSVKFSERNLTFINYWNLSDTD---RRGYGYSPVEASIPLIRAIYDTEQFNARFFSQGGTT 273 (535) T ss_pred cCcccc-CceEEEEEecCceeEEECcccEEEEeccCCCCcc---cccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCc Confidence 232211 123344443 246889999999887654432 24569999999999999999988888887776443 Q ss_pred -ceeeech--HHhhcchHHHHHHHHHHHHHHhcCCcee-EEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 324 -SGILMDL--AQALMPGANVDLSMRAELINRYRDNRNI-LFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPL 397 (695) Q Consensus 324 -~v~k~~~--~~~l~~~~~~~l~~r~~~~~~~~~n~~~-~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~ 397 (695) .+++++. ...++.+..+.+.+.++..-..-+|.+- .++.+++-+|+.++.+..+ +-+........||.+-+||- T Consensus 274 ~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp 353 (535) T protein:vir:10 274 RGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQP 353 (535) T ss_pred cEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 4566653 2345554445555555443333345554 3554445677777765543 44455567889999999999 Q ss_pred eeeeccCc-ccccCcchHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHH Q lcl|Aclame:pro 398 IKLLGITP-TGLNASSEGEIRVWYDYVRAYQRNA----LQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAES 472 (695) Q Consensus 398 t~L~G~sp-~Glnatge~D~~nyyd~i~~~Qe~~----l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei 472 (695) ..| |..- +..+.+.+.....|.+.++..+... |.|.+..+-..|-+..+.....++.|.|+.|...+.++++++ T Consensus 354 ~~l-G~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~~~~~~f~f~~l~~~d~~~r~~~ 432 (535) T protein:vir:10 354 EEI-NFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDKIMRYVDTDYRFSFTLGDAQDKLQEEQV 432 (535) T ss_pred HHh-ccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCeEEEEeccccccCHHHHHHH Confidence 988 6543 3333333334455666666665544 667777766666555554445678999999988888777654 Q ss_pred HHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhh---hhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCC Q lcl|Aclame:pro 473 RYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDA---NDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAG 549 (695) Q Consensus 473 ~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (695) ... ...|+++.+|+|+.+...+..+....... .................. ...+.......... ... T Consensus 433 ~~~--------~~~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~q~-~~~ 502 (535) T protein:vir:10 433 WKL--------KLANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFINATGFGQPNVPDSS-DDSGSTLGERERQE-RIQ 502 (535) T ss_pred HHH--------HHcCCCCHHHHHHHhCCCCCCCccccccccchhhcccccccccccCCCCC-CCccccCCccccCc-ccc Confidence 322 12467899999998765544322210000 000000000000000000 00000000000000 000 Q ss_pred ccchhhhhhhhhccccccccccCceEEEEEEEEEcCCeE Q lcl|Aclame:pro 550 ATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKV 588 (695) Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v 588 (695) ...........+..+. .++...- -+=.+++.-- T Consensus 503 ~~~~~~~g~~~~~~~~-----~~~~~~~-~~~~~~~~~~ 535 (535) T protein:vir:10 503 HSKDYEKGKDDPKSPL-----PKPSESD-DVSNNEDADT 535 (535) T ss_pred cccccccCCCCCCCCC-----CcCCCCC-ccccccccCC Confidence 0000000000000000 0000000 0000000000 No 66 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=99.35 E-value=2.7e-12 Score=84.03 Aligned_cols=504 Identities=12% Similarity=0.063 Sum_probs=210.2 Q ss_pred HHHHHHHHHhcCCCCcccchhhcccccccccccccccc-----hhhhhhhcccccCCCCcccccccc----c--cccccc Q lcl|Aclame:pro 27 LAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPS-----PSLRLARQFEVDVSNYTPRERRAA----S--YALDFN 95 (695) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~ 95 (695) +| .|-+. .|-++-...+.-+.+.|. .+... +.......+....+ . |.-.+. T Consensus 1 ~~---~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~ 62 (563) T protein:vir:95 1 MA---DLFKQ----------FRLGKDYGNNSTIAQVPIDEGLQANIKK-----IEQDNKEYQDLTKSLYGQQQAYAEPFI 62 (563) T ss_pred Ch---hhhhh----------hhcccccccccccceeeccCChhhhHhh-----hhccchhHHHHHhhhccCCCcchhhhH Confidence 11 11110 112221222222222222 00000 00000000000000 0 000011 Q ss_pred ccchhhhhhhccCCCCc--h---HHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccc--cccccC-- Q lcl|Aclame:pro 96 GTSMDALSFVTSSGFPG--F---PTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG--NAASTS-- 166 (695) Q Consensus 96 ~~~~~~~~~~~~~~f~g--y---~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~--~~~~~~-- 166 (695) .......+++...+.+- | .+|.+|+.++++++||++.+++..+-...+ ...++.. ++.+.. ....+. T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~--~~~~~~~--~~~i~l~~~~~~~~~~ 138 (563) T protein:vir:95 63 EMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPA--RYSEKGL--GFEVRLRDLDAEPGRK 138 (563) T ss_pred hhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhh--hhhcccc--cceeEEeecCCCcchh Confidence 11111123443333222 2 246778889999999999999876521100 0001110 111110 001111 Q ss_pred CHHHHHHHHHHHHhhc---------hHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecc Q lcl|Aclame:pro 167 DGDQLKQINDEIERLR---------IRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEP 237 (695) Q Consensus 167 ~~~~~~~i~~~~~~l~---------~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~ 237 (695) +...+..++..+..++ .++-+...+...-++|-+++++.+..++ .|.+.+|.++++ T Consensus 139 ~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~---------------~G~~~~L~pl~p 203 (563) T protein:vir:95 139 EKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNN---------------KTKLEKFIAVDP 203 (563) T ss_pred hhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecC---------------CCceEEEEEeCC Confidence 1122233444443222 1233344444456789888887664332 345778999999 Q ss_pred hhccccceecccccccccCCc-eeEE-Ecce---EEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhH Q lcl|Aclame:pro 238 YWVTPNNYNSINPVADDFYKP-STWW-MIGT---EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQ 312 (695) Q Consensus 238 ~~i~p~~~~~~dp~s~~yg~P-~~y~-i~~~---~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~ 312 (695) ..|++.... ...-|... .+++ +.|. .+-++.+|++.-.+.++. .....|.|.++.+.+.|.....+.. T Consensus 204 ~~V~v~~~~----~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~---~~~~~G~Spi~~a~~~i~~~~~~~~ 276 (563) T protein:vir:95 204 STIFYATDK----KGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTEL---SSSGYGLSEVEIAMKEFIAYNNTES 276 (563) T ss_pred ceeEEEECC----CCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCc---ccCcccchHHHHHHHHHHHHHHHHH Confidence 998874332 12222222 2333 3343 445667776655544332 2245699999999999999988888 Q ss_pred HHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCcee--EEEEcCCceeEEEecccCC--hHHHHHHHH Q lcl|Aclame:pro 313 SVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRNI--LFLDKATEEFFQFNTPLSG--LDALQAQAQ 386 (695) Q Consensus 313 ~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~--~~ld~~~e~~~~~~~~lsg--l~~~~~~~~ 386 (695) ....++..... .+++++....++.+..+.+.+.++.....-+|.|- ++++ ++-+|+.++.+... +-+...... T Consensus 277 ~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~-~G~~~~~l~~~~~d~qfle~~~~~~ 355 (563) T protein:vir:95 277 FNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMA-DDIKFVNMTPTANDMQFEKWLNYLI 355 (563) T ss_pred HHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcC-CCceEEeccCChhHHHHHHHHHHHH Confidence 88887776443 23555443445554445555555543333345443 4455 46788888876543 456777788 Q ss_pred HHHHhhhcCCceeeeccCcc-cccCc----------chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCcee Q lcl|Aclame:pro 387 EQMSAVSHIPLIKLLGITPT-GLNAS----------SEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIK 455 (695) Q Consensus 387 ~~iaaas~iP~t~L~G~sp~-Glnat----------ge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~ 455 (695) +.||.+.+||-.+| |.... +..++ -|.-...||+ .-|.|.+..+-..|-+..+-.....+. T Consensus 356 ~~Ia~afgVPp~~l-G~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~-------~tL~P~l~~ie~~ln~~L~~~~~~~~~ 427 (563) T protein:vir:95 356 NIISALYGIDPAEI-GFPNRGGATGSKGGSTLNEADPGKKQQQSQN-------KGLQPLLRFIEDLVNRHIISEYGDKYT 427 (563) T ss_pred HHHHHHhCCCHHHc-cccccccccccccccchhhccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhchhcccccE Confidence 89999999998888 65422 22111 1222223332 346777776665554433322233455 Q ss_pred EEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--hhh---hhhhh- Q lcl|Aclame:pro 456 WQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPAD--DDI---DGVLT- 529 (695) Q Consensus 456 ~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~- 529 (695) +.|. ..+.+.+++... ...++..|+++++|+|..+...+..+................ ... ..... T Consensus 428 ~~f~---r~D~~~~~e~~~-----~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (563) T protein:vir:95 428 FQFV---GGDTKSATDKLN-----ILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKER 499 (563) T ss_pred EEec---cCCHHHHHHHHH-----HHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchh Confidence 5553 334444433221 223567899999999998776544332111000000000000 000 00000 Q ss_pred hhhhhhh-hcccccccccCCCccchhhhh-hhhhccccccccccCceEEEEEEEEEcCCeEEEEEeCCCceeC Q lcl|Aclame:pro 530 YVQRLAE-GGDTGAPGGARAGATAPPTVA-NVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGL 600 (695) Q Consensus 530 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~l 600 (695) ....... ..................... ........ .....+.. ++ .. .++ +...+...|.- T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~-~~-~~~---~~~~~~~~~~~ 563 (563) T protein:vir:95 500 LQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGTDAQIKG--DDNVYRTQ--TS-NK-GQG---RKGEKSSDFKH 563 (563) T ss_pred hhhcccccCCCCCCCCCCCCCCCCCCcccccccccccc--cccccccc--Cc-cc-ccc---ccCcCcccccC Confidence 0000000 000000000000000000000 00000000 00000000 00 00 000 00000011111 No 67 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=99.35 E-value=2.7e-12 Score=84.03 Aligned_cols=504 Identities=12% Similarity=0.063 Sum_probs=210.2 Q ss_pred HHHHHHHHHhcCCCCcccchhhcccccccccccccccc-----hhhhhhhcccccCCCCcccccccc----c--cccccc Q lcl|Aclame:pro 27 LAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPS-----PSLRLARQFEVDVSNYTPRERRAA----S--YALDFN 95 (695) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~ 95 (695) +| .|-+. .|-++-...+.-+.+.|. .+... +.......+....+ . |.-.+. T Consensus 1 ~~---~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~ 62 (563) T protein:vir:99 1 MA---DLFKQ----------FRLGKDYGNNSTIAQVPIDEGLQANIKK-----IEQDNKEYQDLTKSLYGQQQAYAEPFI 62 (563) T ss_pred Ch---hhhhh----------hhcccccccccccceeeccCChhhhHhh-----hhccchhHHHHHhhhccCCCcchhhhH Confidence 11 11110 112221222222222222 00000 00000000000000 0 000011 Q ss_pred ccchhhhhhhccCCCCc--h---HHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccc--cccccC-- Q lcl|Aclame:pro 96 GTSMDALSFVTSSGFPG--F---PTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG--NAASTS-- 166 (695) Q Consensus 96 ~~~~~~~~~~~~~~f~g--y---~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~--~~~~~~-- 166 (695) .......+++...+.+- | .+|.+|+.++++++||++.+++..+-...+ ...++.. ++.+.. ....+. T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~--~~~~~~~--~~~i~l~~~~~~~~~~ 138 (563) T protein:vir:99 63 EMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPA--RYSEKGL--GFEVRLRDLDAEPGRK 138 (563) T ss_pred hhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhh--hhhcccc--cceeEEeecCCCcchh Confidence 11111123443333222 2 246778889999999999999876521100 0001110 111110 001111 Q ss_pred CHHHHHHHHHHHHhhc---------hHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecc Q lcl|Aclame:pro 167 DGDQLKQINDEIERLR---------IRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEP 237 (695) Q Consensus 167 ~~~~~~~i~~~~~~l~---------~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~ 237 (695) +...+..++..+..++ .++-+...+...-++|-+++++.+..++ .|.+.+|.++++ T Consensus 139 ~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~---------------~G~~~~L~pl~p 203 (563) T protein:vir:99 139 EKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNN---------------KTKLEKFIAVDP 203 (563) T ss_pred hhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecC---------------CCceEEEEEeCC Confidence 1122233444443222 1233344444456789888887664332 345778999999 Q ss_pred hhccccceecccccccccCCc-eeEE-Ecce---EEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhH Q lcl|Aclame:pro 238 YWVTPNNYNSINPVADDFYKP-STWW-MIGT---EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQ 312 (695) Q Consensus 238 ~~i~p~~~~~~dp~s~~yg~P-~~y~-i~~~---~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~ 312 (695) ..|++.... ...-|... .+++ +.|. .+-++.+|++.-.+.++. .....|.|.++.+.+.|.....+.. T Consensus 204 ~~V~v~~~~----~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~---~~~~~G~Spi~~a~~~i~~~~~~~~ 276 (563) T protein:vir:99 204 STIFYATDK----KGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTEL---SSSGYGLSEVEIAMKEFIAYNNTES 276 (563) T ss_pred ceeEEEECC----CCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCc---ccCcccchHHHHHHHHHHHHHHHHH Confidence 998874332 12222222 2333 3343 445667776655544332 2245699999999999999988888 Q ss_pred HHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCcee--EEEEcCCceeEEEecccCC--hHHHHHHHH Q lcl|Aclame:pro 313 SVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRNI--LFLDKATEEFFQFNTPLSG--LDALQAQAQ 386 (695) Q Consensus 313 ~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~--~~ld~~~e~~~~~~~~lsg--l~~~~~~~~ 386 (695) ....++..... .+++++....++.+..+.+.+.++.....-+|.|- ++++ ++-+|+.++.+... +-+...... T Consensus 277 ~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~-~G~~~~~l~~~~~d~qfle~~~~~~ 355 (563) T protein:vir:99 277 FNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMA-DDIKFVNMTPTANDMQFEKWLNYLI 355 (563) T ss_pred HHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcC-CCceEEeccCChhHHHHHHHHHHHH Confidence 88887776443 23555443445554445555555543333345443 4455 46788888876543 456777788 Q ss_pred HHHHhhhcCCceeeeccCcc-cccCc----------chHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCcee Q lcl|Aclame:pro 387 EQMSAVSHIPLIKLLGITPT-GLNAS----------SEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIK 455 (695) Q Consensus 387 ~~iaaas~iP~t~L~G~sp~-Glnat----------ge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~ 455 (695) +.||.+.+||-.+| |.... +..++ -|.-...||+ .-|.|.+..+-..|-+..+-.....+. T Consensus 356 ~~Ia~afgVPp~~l-G~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~-------~tL~P~l~~ie~~ln~~L~~~~~~~~~ 427 (563) T protein:vir:99 356 NIISALYGIDPAEI-GFPNRGGATGSKGGSTLNEADPGKKQQQSQN-------KGLQPLLRFIEDLVNRHIISEYGDKYT 427 (563) T ss_pred HHHHHHhCCCHHHc-cccccccccccccccchhhccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhchhcccccE Confidence 89999999998888 65422 22111 1222223332 346777776665554433322233455 Q ss_pred EEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--hhh---hhhhh- Q lcl|Aclame:pro 456 WQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPAD--DDI---DGVLT- 529 (695) Q Consensus 456 ~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~- 529 (695) +.|. ..+.+.+++... ...++..|+++++|+|..+...+..+................ ... ..... T Consensus 428 ~~f~---r~D~~~~~e~~~-----~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (563) T protein:vir:99 428 FQFV---GGDTKSATDKLN-----ILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKER 499 (563) T ss_pred EEec---cCCHHHHHHHHH-----HHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchh Confidence 5553 334444433221 223567899999999998776544332111000000000000 000 00000 Q ss_pred hhhhhhh-hcccccccccCCCccchhhhh-hhhhccccccccccCceEEEEEEEEEcCCeEEEEEeCCCceeC Q lcl|Aclame:pro 530 YVQRLAE-GGDTGAPGGARAGATAPPTVA-NVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGL 600 (695) Q Consensus 530 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~l 600 (695) ....... ..................... ........ .....+.. ++ .. .++ +...+...|.- T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~-~~-~~~---~~~~~~~~~~~ 563 (563) T protein:vir:99 500 LQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGTDAQIKG--DDNVYRTQ--TS-NK-GQG---RKGEKSSDFKH 563 (563) T ss_pred hhhcccccCCCCCCCCCCCCCCCCCCcccccccccccc--cccccccc--Cc-cc-ccc---ccCcCcccccC Confidence 0000000 000000000000000000000 00000000 00000000 00 00 000 00000011111 No 68 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=99.35 E-value=7.8e-13 Score=86.97 Aligned_cols=336 Identities=12% Similarity=0.033 Sum_probs=174.8 Q ss_pred HhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEEEEE Q lcl|Aclame:pro 128 MHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPYFKI 206 (695) Q Consensus 128 ~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~i~~ 206 (695) |-.+|-. .+|+. ...+......|...=...--+..|.+.+. +--++|-+++++.- T Consensus 1 ia~lp~~-~~~~~-----------------------~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r 56 (348) T protein:vir:93 1 MASLPLK-MYEDY-----------------------KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER 56 (348) T ss_pred CcccceE-eEecC-----------------------cCcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEE Confidence 1111110 11111 11122222333322222223444544444 44568888877653 Q ss_pred cCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc---c--eEEchhhEEEecCCcc Q lcl|Aclame:pro 207 KGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---G--TEVHATRLHTIVSRPV 281 (695) Q Consensus 207 ~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---~--~~iH~SRli~~~~~~~ 281 (695) +. .|.+..|.++.+..+++.... .+.+.+|.+. | ..+.++.||+|.+... T Consensus 57 ~~-----------------~G~~~~L~~l~~~~v~~~~~~--------~~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~ 111 (348) T protein:vir:93 57 DI-----------------YHQPSKLFLLNPDVVEMLIEN--------QSRELYYSIHAATGNKLIVHNMDMLHFKHIVA 111 (348) T ss_pred CC-----------------CCcEEEEEEEcCCceEEEEeC--------CCcEEEEEEEcCCCeEEEEccccEEEecCCCC Confidence 21 245667888888887654221 1234455554 2 3588999999986432 Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEE Q lcl|Aclame:pro 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFL 361 (695) Q Consensus 282 p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~l 361 (695) ...+.|.|.++.+.+.+.....+.... +..-..-..+.......++.+..+.+.++++. ...++.+++++ T Consensus 112 ------~~~~~G~s~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~--~~~n~~~~~vl 181 (348) T protein:vir:93 112 ------SNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQ--YYEENGGILFQ 181 (348) T ss_pred ------CCceeeccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEecCCCCCHHHHHHHHHHHHH--HhhcCCCeeec Confidence 234579999998887776554443332 22212211222222234555544555555543 23455556777 Q ss_pred EcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHH Q lcl|Aclame:pro 362 DKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVI 439 (695) Q Consensus 362 d~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~ 439 (695) +. +.+|+.++.+.. .+-+........||++.+||-.+|-+ ..++-.++.|.-.++||..+ |.|.++.+- T Consensus 182 ~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~-~~~~~~~~~e~~~~~~~~~~-------l~P~~~~ie 252 (348) T protein:vir:93 182 EP-GVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA-RSNTNFAKNEELNRFYLQHT-------LLPIVKQYE 252 (348) T ss_pred CC-CceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCCCcccHHHHHHHHHHHH-------HHHHHHHHH Confidence 64 678999887655 34555667788999999999988844 32333355565666776655 888888887 Q ss_pred HHHHHHhcCCC--CCc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 440 VMIQLSLFGAV--DPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDD 515 (695) Q Consensus 440 ~~l~~s~~g~~--~~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~ 515 (695) +.+-+..+-.. ..+ +.|.+..|...+.++++ ++..++++.|+++.+|+|..+...+..+.......... T Consensus 253 ~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a-------~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~ 325 (348) T protein:vir:93 253 EEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQA-------EVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDL 325 (348) T ss_pred HHHHHhhCCcccccCcceEEeechhhhccCHHHHH-------HHHHHHHhCCCCCHHHHHHHhCCCCCCCcCeEeecccc Confidence 76665444221 123 44556677777776664 46677788999999999998766554321111000000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhcccccccccCCCcc Q lcl|Aclame:pro 516 PGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGAT 551 (695) Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (695) ..... .........-+.... .. . T Consensus 326 ~~~~~----~~~~~~~~~gg~~n~-~~--------~ 348 (348) T protein:vir:93 326 YPIDT----PLELRKSLKGGDKNV-NE--------S 348 (348) T ss_pred ccccc----chhhcccccCCCCCc-CC--------C Confidence 00000 000000000000000 00 0 No 69 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=99.34 E-value=1.6e-11 Score=79.78 Aligned_cols=506 Identities=9% Similarity=0.023 Sum_probs=210.2 Q ss_pred hhhhHHH-HHHHHH------hcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCccccccccccccccc Q lcl|Aclame:pro 23 KAAALAA-AATIAT------ATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFN 95 (695) Q Consensus 23 ~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (695) ---+||+ ++++.- +-.|-|.... -.+.|.-.+.+..... -..++...+.. +..-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~~a~~-~p~~~ 62 (576) T protein:vir:96 1 MVTRLADIFKRLRLGRDYEDIIDTVPIDDG--LQANIRNIEEKSKELN---------------KSLYGKQQAYA-EPFLE 62 (576) T ss_pred ChhhHHHHHHHHhccCccccchhhhhcccC--hhHHHHHhhhhhhhhc---------------cccCCccchhh-cceee Confidence 1223332 222210 0001111110 0001111100000000 00000000000 00000 Q ss_pred ccchhhhhhhccCC----CCch-HHHHHHHhChhhhhHhhcchHHHhhC-CceeeccchhhhhccCcccccc-ccccCCH Q lcl|Aclame:pro 96 GTSMDALSFVTSSG----FPGF-PTLVLLAQLPEYRAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGN-AASTSDG 168 (695) Q Consensus 96 ~~~~~~~~~~~~~~----f~gy-~~~a~~~~~~~~r~~v~~~a~d~tR~-~~~i~~~~~~d~~~~g~~~~~~-~~~~~~~ 168 (695) .. ....++....+ +.++ .++..|+.++++++||++.+++...- ...... .+. .++.+..- ...+... T Consensus 63 ~~-~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~---~~~--~~~~i~lk~~~~~~~~ 136 (576) T protein:vir:96 63 VM-DTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILNAIILTRSNQVAMYCQPSRYN---ERG--LGFEVRMRDLDAEPGK 136 (576) T ss_pred ee-ecCCCccccCcchhhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhc---ccc--ccceeEEecCcCccch Confidence 00 00001111111 1122 34667888999999999999886542 000000 000 01111000 0001111 Q ss_pred HH---HHHHHHHHHhhch--------HHHHHHHHH-hcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEec Q lcl|Aclame:pro 169 DQ---LKQINDEIERLRI--------RDAVRTTVI-HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVE 236 (695) Q Consensus 169 ~~---~~~i~~~~~~l~~--------~~~~~~a~~-~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d 236 (695) +. +..+...+..+.. +..|.+.+. ..-+||-+++++....++ .|.+.+|.+++ T Consensus 137 ~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~---------------~g~~~~L~pl~ 201 (576) T protein:vir:96 137 KEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKN---------------ATTMDKFIAVD 201 (576) T ss_pred hhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEEecCC---------------CCceEEEEEeC Confidence 12 2223333333221 233544444 446799999887764332 24567889999 Q ss_pred chhccccceecccccccccCCceeE-EEc-c---eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 237 PYWVTPNNYNSINPVADDFYKPSTW-WMI-G---TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTR 311 (695) Q Consensus 237 ~~~i~p~~~~~~dp~s~~yg~P~~y-~i~-~---~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~ 311 (695) +..|++... .....|..+..| ++. + ..+.++.+|+|.-.+.++.. ....|.|.++.+.+.|.....+. T Consensus 202 p~~V~v~~~----~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~---~~~~G~Spi~~a~~~i~~~~~~~ 274 (576) T protein:vir:96 202 PSTIFYATD----KNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELS---SSGYGLSEVEIAMKQFIAYNNTE 274 (576) T ss_pred CceeEEEEC----CCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcc---cCcccccHHHHHHHHHHHHHHHH Confidence 988876432 222234344333 222 2 34567788877766554432 24569999999999999888888 Q ss_pred HHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCcee--EEEEcCCceeEEEecccC--ChHHHHHHH Q lcl|Aclame:pro 312 QSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRNI--LFLDKATEEFFQFNTPLS--GLDALQAQA 385 (695) Q Consensus 312 ~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~--~~ld~~~e~~~~~~~~ls--gl~~~~~~~ 385 (695) .....++..... .+++++....++.+..+.+.+.++..-..-+|.+- ++++ ++-+|+.++.+.. .+-+..... T Consensus 275 ~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~-~G~~~~~ls~~~~d~qfle~~~~~ 353 (576) T protein:vir:96 275 TFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVMA-DDIKFVNMTPTANDMQFEKWLTYL 353 (576) T ss_pred HHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecC-CCceEEeccCChhhHHHHHHHHHh Confidence 888887766443 34555543445554445555555543333345443 4555 4678888876543 456777788 Q ss_pred HHHHHhhhcCCceeeeccCcccc-----------cCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCce Q lcl|Aclame:pro 386 QEQMSAVSHIPLIKLLGITPTGL-----------NASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSI 454 (695) Q Consensus 386 ~~~iaaas~iP~t~L~G~sp~Gl-----------natge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~ 454 (695) .+.||.+.+||..+| |....+- .++-|...+.||+. -|.|.+..+-..|-+..+-....++ T Consensus 354 ~~~Ia~afgVPp~~l-G~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~-------tL~P~~~~ie~~ln~~Ll~~~~~~~ 425 (576) T protein:vir:96 354 INIISALYGIDPAEI-GFPNRGGATGGKGGNTLNEADPGKKQQQSQNK-------GLQPLLRFIEDLINTHIISEYSDKY 425 (576) T ss_pred HHHHHHHhCCCHHHc-cccccccccccccccccccccHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhchhccCce Confidence 899999999998888 6543221 12223333444433 3677777766555443332233455 Q ss_pred eEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----hhhh-hhh Q lcl|Aclame:pro 455 KWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPAD-----DDID-GVL 528 (695) Q Consensus 455 ~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~ 528 (695) .|+|. ..+.+.+++.. ........|+++.+|+|..+...+..+................ .... ... T Consensus 426 ~~~f~---r~d~~~~~e~~-----~~~~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~~~ 497 (576) T protein:vir:96 426 VFQFV---GGDTKSELDKI-----KILQEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQKE 497 (576) T ss_pred EEEec---cCCHHHHHHHH-----HHHHHHhcCccCHHHHHHHhCCCCCCCcceeccccccccccccccCCCCCCccccc Confidence 66654 33333333322 1123344699999999988765443321110000000000000 0000 000 Q ss_pred hhhhhhhhhcccccccccCCCccchhhhhh--------------hhhccccccccccCceEEEEEEEEEcCCeEEEEEe- Q lcl|Aclame:pro 529 TYVQRLAEGGDTGAPGGARAGATAPPTVAN--------------VNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKR- 593 (695) Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r- 593 (695) .................. .......... .......+.....+... ..++=...|- T Consensus 498 ~~~~~~~~~~~~~~~~~~--~~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 567 (576) T protein:vir:96 498 RFDMIQQFLNSPDDEEPQ--QESTEDKVDGRESNDPTKIDSPVGTDGQLKDQDNVKSQEGS--------NKGQGTKGKGN 567 (576) T ss_pred cccccccccCCCCCCCCC--CCCCCCcccccccccCCCCCCccccccccCCCCcccccccc--------cccccccccCC Confidence 000000000000000000 0000000000 00000000000000000 0111111111 Q ss_pred -CCCceeCC Q lcl|Aclame:pro 594 -PAGDWGLP 601 (695) Q Consensus 594 -~~g~W~lP 601 (695) +...|.-- T Consensus 568 ~~~~~~~~~ 576 (576) T protein:vir:96 568 EKPSDFKNN 576 (576) T ss_pred CCcccccCC Confidence 11223322 No 70 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=99.34 E-value=1.1e-12 Score=86.04 Aligned_cols=404 Identities=11% Similarity=0.028 Sum_probs=180.0 Q ss_pred cCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCC------- Q lcl|Aclame:pro 37 TAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSG------- 109 (695) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 109 (695) |++.. |...-.+-. ..+. . ..++......+|.+.. T Consensus 1 ~~~~t-~~~~~~~l~-------------------~~~~------------~------~~~r~~~l~~Yy~g~~~i~~~~~ 42 (456) T protein:vir:10 1 MTAST-PAEWLPVLT-------------------KRID------------D------GMSRVRLLARYSNGDAPLPELTR 42 (456) T ss_pred CCCCC-HHHHHHHHH-------------------HHHH------------H------HHHHHHHHHHHHhcCCCchhcCc Confidence 00000 000000000 0000 0 0000000001111100 Q ss_pred -CC-chHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHH Q lcl|Aclame:pro 110 -FP-GFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAV 187 (695) Q Consensus 110 -f~-gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 187 (695) +. -+..+.....+...++|||..+.-++-+++.+. + ..+.+..+.+.+.|++-++.... T Consensus 43 ~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~---------------~----~~d~~~~~~~~~i~~~N~~d~~~ 103 (456) T protein:vir:10 43 NTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG---------------G----SADSDLALRARRIWRDNRMDSVC 103 (456) T ss_pred ccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecC---------------C----CCCcchHHHHHHHHHhcChhhHH Confidence 00 000111112233457777777776666665542 1 12233345577778887888889 Q ss_pred HHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccc--------------eec------ Q lcl|Aclame:pro 188 RTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNN--------------YNS------ 247 (695) Q Consensus 188 ~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~--------------~~~------ 247 (695) .++.+.+-.||.++.++..+.++... |++++|.++.+.. +.. T Consensus 104 ~~~~~~a~i~G~ay~~v~~d~~g~~~------------------i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~ 165 (456) T protein:vir:10 104 KQWVKYGLDFGESYLTCWRRDDGTAT------------------ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESD 165 (456) T ss_pred HHHHHHHhhcCeeEEEEeeCCCCceE------------------EEEEccceeEEEEcCCCCcceEEEEEEEEecCCcee Confidence 99999998999999887765444221 2222333222210 000 Q ss_pred -----ccccccccCCceeE--EEcceEEc---hhh-----EEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhH Q lcl|Aclame:pro 248 -----INPVADDFYKPSTW--WMIGTEVH---ATR-----LHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQ 312 (695) Q Consensus 248 -----~dp~s~~yg~P~~y--~i~~~~iH---~SR-----li~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~ 312 (695) .+.....|+.+... .......+ .+- ..++-|. +|- -+..|-+|.|.++.+.+.+.+++++.. T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv--v~~~N~~g~gd~e~vi~liDa~~~~~s 242 (456) T protein:vir:10 166 FAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSP-PPV--VVYQNPDGMGEVEPHIDIINRINRAEL 242 (456) T ss_pred EEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCc-eeE--EEecCCCCCchhhhhHHHHHHHHHHHH Confidence 00000011111000 00000000 000 0011111 111 123466899999999999999988876 Q ss_pred HHHHHHHH--hccceee-echHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEe-cccCChHHHHHHHHHH Q lcl|Aclame:pro 313 SVSDIVKQ--FSVSGIL-MDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFN-TPLSGLDALQAQAQEQ 388 (695) Q Consensus 313 ~~~~l~~~--~~~~v~k-~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~ 388 (695) ....-..- +.+.+++ ++............+ ...+.+.... ..+..++ ++.++.+++ +++.+..+.+....++ T Consensus 243 ~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~-~~~~~~~~~~--~~~~~~~-~~~~~~q~~~~~~~~~~~~l~~~i~~ 318 (456) T protein:vir:10 243 QLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI-DYASIFEAAP--GALWELP-PGVDIWESQANDFTPMLSAIKEHIRQ 318 (456) T ss_pred HHHHHHHHhhhHhHhhhccCccccccccccccc-chhhhhhhhc--cccccCC-CCcceEEecccChhHHHHHHHHHHHH Confidence 54332222 2233332 111111111111111 1222232222 1234444 466666664 5677888999999999 Q ss_pred HHhhhcCCceeeeccCcccccCcchHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCC-CceeEEecccccc Q lcl|Aclame:pro 389 MSAVSHIPLIKLLGITPTGLNASSEGE---IRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVD-PSIKWQWNALREL 464 (695) Q Consensus 389 iaaas~iP~t~L~G~sp~Glnatge~D---~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~-~d~~~~f~pL~~~ 464 (695) |++.+++|...|-|.+. |.||+.= ....-..++. ++..+++.|++++.+++.- .|..+ .++.+.|.|.... T Consensus 319 ~~~~s~~p~~~~~~~~~---N~Sg~Ai~~~~~~l~~k~~~-~~~~f~~~l~~~~rl~~~~-~g~~~~~~~~v~w~~~~~~ 393 (456) T protein:vir:10 319 LSSATKTPLPMLMPDSA---NQSAEGAHNIEKGFLFKCED-RLSIAKIGLEAILVKALQI-EGESVEDTVDVSFESPDRV 393 (456) T ss_pred HHhccCCChHHhccccc---ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-cCCCcccceeEEecCCCCc Confidence 99999999999876542 4566632 2233334444 3456889999998887643 34443 4789999999888 Q ss_pred chhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccc Q lcl|Aclame:pro 465 DDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAP 543 (695) Q Consensus 465 se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (695) +..+.++ ++.++...|+++...++..+..... .................... ....+ ..-..+ T Consensus 394 ~~~~~ad-------a~~kl~~~gi~~~~~~~~~lg~~~~-----~i~~~e~er~~~e~~~~~~~--~~~~~--~~~~~~ 456 (456) T protein:vir:10 394 TLGEKYS-------AASLAKAAGESWASIRRNILNYNAD-----QIKQDDLDRAREQITLFAGN--PVQRP--QEDGSR 456 (456) T ss_pred CHHHHHH-------HHHHHHHcCCChHHHHHhhCCCCHH-----HHHHHHHHHHHHHHHHHhhh--hhhcC--CCCCCC Confidence 8777654 4445555677776665544422110 00000010000000000000 00000 000000 No 71 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=99.34 E-value=1.1e-12 Score=86.04 Aligned_cols=404 Identities=11% Similarity=0.028 Sum_probs=180.0 Q ss_pred cCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCC------- Q lcl|Aclame:pro 37 TAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSG------- 109 (695) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 109 (695) |++.. |...-.+-. ..+. . ..++......+|.+.. T Consensus 1 ~~~~t-~~~~~~~l~-------------------~~~~------------~------~~~r~~~l~~Yy~g~~~i~~~~~ 42 (456) T protein:vir:10 1 MTAST-PAEWLPVLT-------------------KRID------------D------GMSRVRLLARYSNGDAPLPELTR 42 (456) T ss_pred CCCCC-HHHHHHHHH-------------------HHHH------------H------HHHHHHHHHHHHhcCCCchhcCc Confidence 00000 000000000 0000 0 0000000001111100 Q ss_pred -CC-chHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHH Q lcl|Aclame:pro 110 -FP-GFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAV 187 (695) Q Consensus 110 -f~-gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 187 (695) +. -+..+.....+...++|||..+.-++-+++.+. + ..+.+..+.+.+.|++-++.... T Consensus 43 ~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~---------------~----~~d~~~~~~~~~i~~~N~~d~~~ 103 (456) T protein:vir:10 43 NTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG---------------G----SADSDLALRARRIWRDNRMDSVC 103 (456) T ss_pred ccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecC---------------C----CCCcchHHHHHHHHHhcChhhHH Confidence 00 000111112233457777777776666665542 1 12233345577778887888889 Q ss_pred HHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccc--------------eec------ Q lcl|Aclame:pro 188 RTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNN--------------YNS------ 247 (695) Q Consensus 188 ~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~--------------~~~------ 247 (695) .++.+.+-.||.++.++..+.++... |++++|.++.+.. +.. T Consensus 104 ~~~~~~a~i~G~ay~~v~~d~~g~~~------------------i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~d~~~~ 165 (456) T protein:vir:10 104 KQWVKYGLDFGESYLTCWRRDDGTAT------------------ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESD 165 (456) T ss_pred HHHHHHHhhcCeeEEEEeeCCCCceE------------------EEEEccceeEEEEcCCCCcceEEEEEEEEecCCcee Confidence 99999998999999887765444221 2222333222210 000 Q ss_pred -----ccccccccCCceeE--EEcceEEc---hhh-----EEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhH Q lcl|Aclame:pro 248 -----INPVADDFYKPSTW--WMIGTEVH---ATR-----LHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQ 312 (695) Q Consensus 248 -----~dp~s~~yg~P~~y--~i~~~~iH---~SR-----li~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~ 312 (695) .+.....|+.+... .......+ .+- ..++-|. +|- -+..|-+|.|.++.+.+.+.+++++.. T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv--v~~~N~~g~gd~e~vi~liDa~~~~~s 242 (456) T protein:vir:10 166 FAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSP-PPV--VVYQNPDGMGEVEPHIDIINRINRAEL 242 (456) T ss_pred EEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCc-eeE--EEecCCCCCchhhhhHHHHHHHHHHHH Confidence 00000011111000 00000000 000 0011111 111 123466899999999999999988876 Q ss_pred HHHHHHHH--hccceee-echHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEe-cccCChHHHHHHHHHH Q lcl|Aclame:pro 313 SVSDIVKQ--FSVSGIL-MDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFN-TPLSGLDALQAQAQEQ 388 (695) Q Consensus 313 ~~~~l~~~--~~~~v~k-~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~ 388 (695) ....-..- +.+.+++ ++............+ ...+.+.... ..+..++ ++.++.+++ +++.+..+.+....++ T Consensus 243 ~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~-~~~~~~~~~~--~~~~~~~-~~~~~~q~~~~~~~~~~~~l~~~i~~ 318 (456) T protein:vir:10 243 QLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI-DYASIFEAAP--GALWELP-PGVDIWESQANDFTPMLSAIKEHIRQ 318 (456) T ss_pred HHHHHHHHhhhHhHhhhccCccccccccccccc-chhhhhhhhc--cccccCC-CCcceEEecccChhHHHHHHHHHHHH Confidence 54332222 2233332 111111111111111 1222232222 1234444 466666664 5677888999999999 Q ss_pred HHhhhcCCceeeeccCcccccCcchHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCC-CceeEEecccccc Q lcl|Aclame:pro 389 MSAVSHIPLIKLLGITPTGLNASSEGE---IRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVD-PSIKWQWNALREL 464 (695) Q Consensus 389 iaaas~iP~t~L~G~sp~Glnatge~D---~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~-~d~~~~f~pL~~~ 464 (695) |++.+++|...|-|.+. |.||+.= ....-..++. ++..+++.|++++.+++.- .|..+ .++.+.|.|.... T Consensus 319 ~~~~s~~p~~~~~~~~~---N~Sg~Ai~~~~~~l~~k~~~-~~~~f~~~l~~~~rl~~~~-~g~~~~~~~~v~w~~~~~~ 393 (456) T protein:vir:10 319 LSSATKTPLPMLMPDSA---NQSAEGAHNIEKGFLFKCED-RLSIAKIGLEAILVKALQI-EGESVEDTVDVSFESPDRV 393 (456) T ss_pred HHhccCCChHHhccccc---ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-cCCCcccceeEEecCCCCc Confidence 99999999999876542 4566632 2233334444 3456889999998887643 34443 4789999999888 Q ss_pred chhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccc Q lcl|Aclame:pro 465 DDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAP 543 (695) Q Consensus 465 se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (695) +..+.++ ++.++...|+++...++..+..... .................... ....+ ..-..+ T Consensus 394 ~~~~~ad-------a~~kl~~~gi~~~~~~~~~lg~~~~-----~i~~~e~er~~~e~~~~~~~--~~~~~--~~~~~~ 456 (456) T protein:vir:10 394 TLGEKYS-------AASLAKAAGESWASIRRNILNYNAD-----QIKQDDLDRAREQITLFAGN--PVQRP--QEDGSR 456 (456) T ss_pred CHHHHHH-------HHHHHHHcCCChHHHHHhhCCCCHH-----HHHHHHHHHHHHHHHHHhhh--hhhcC--CCCCCC Confidence 8777654 4445555677776665544422110 00000010000000000000 00000 000000 No 72 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=99.31 E-value=6.2e-12 Score=82.04 Aligned_cols=424 Identities=11% Similarity=-0.003 Sum_probs=193.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCch-----HHH-HHH Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGF-----PTL-VLL 119 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy-----~~~-a~~ 119 (695) |...-...-.+.++ .+. +.....++|. +.+|.|+ +.. ..+ T Consensus 1 ~~~~~~~~~~~~~~-----------------~~~----------------~~~~~~~~~~-g~~~~~~~~~~~~~~~~~a 46 (460) T protein:vir:10 1 MANRIIRALRELTG-----------------LDN----------------KFNDAFIKYI-GQTFTKYDNNGKTYLEQGY 46 (460) T ss_pred CchhHHHHHhhhhc-----------------cCC----------------CchHHHHHhh-ccccCCCccchhhhhHHHH Confidence 11111100000000 000 0000111111 1112221 122 234 Q ss_pred HhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccc----------------cccccccCCHHHHHHHHHHHHhhch Q lcl|Aclame:pro 120 AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAA----------------GGNAASTSDGDQLKQINDEIERLRI 183 (695) Q Consensus 120 ~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~----------------~~~~~~~~~~~~~~~i~~~~~~l~~ 183 (695) .+++-+.++|++++++.-.-=+.+.....+.......+. +.......+......|...=..+-- T Consensus 47 ~~~~~v~~~v~~ia~~iA~lp~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t 126 (460) T protein:vir:10 47 NINPDVYSCISQMAAKTVAVPYTIKVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQT 126 (460) T ss_pred hcchHHHHHHHHHHHhhhhCceEEEeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCC Confidence 567778888998888864432222111100000000000 0000000001111111111111222 Q ss_pred HHHHHHHHH-hcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEE Q lcl|Aclame:pro 184 RDAVRTTVI-HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW 262 (695) Q Consensus 184 ~~~~~~a~~-~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~ 262 (695) ...|.+.+. .--++|-+++++.-...+ ...|.+..|.++++.++++.......+..-.|.. ..|. T Consensus 127 ~~~f~~~~~~~lll~Gnay~~i~r~~~~-------------~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~-~~~~ 192 (460) T protein:vir:10 127 WADIYSLYKTYMRLNGNCYFYLMSPDDG-------------INAGVPSQMYVLPAHLIKIVLKDDINLLSTDSPI-KSYM 192 (460) T ss_pred HHHHHHHHHHHHhhcCCeEEEEEecCCC-------------ccCceeEEEEEEcCceEEEEEcCCCceeeeeeee-eEEE Confidence 334444444 444688888776543221 1345677899999998887543322222211111 2232 Q ss_pred E--cc--eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchH Q lcl|Aclame:pro 263 M--IG--TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGA 338 (695) Q Consensus 263 i--~~--~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~ 338 (695) + .| ..+.++.||+|.....+... ....+.|.|.++.+.+.|.....+.......+.......+-......++.+. T Consensus 193 ~~~~g~~~~~~~~evih~r~~~~~~~~-~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~~~~i~~~~~~l~~e~ 271 (460) T protein:vir:10 193 LIQGDQFIEFNEDEVIHTKYANPNFDL-QGSHLYGMSPIRAILRNINSQNSTIDNNVKTMQNGGVFGFIHGGSTGLTQPQ 271 (460) T ss_pred EecCceeEEecccceEEEecCCCCccc-ccCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCHHH Confidence 2 23 46889999998754432211 1234579999999999998888887777776665333222222223455555 Q ss_pred HHHHHHHHHHHHHhcCCce-eEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCccc-cc-Ccch Q lcl|Aclame:pro 339 NVDLSMRAELINRYRDNRN-ILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTG-LN-ASSE 413 (695) Q Consensus 339 ~~~l~~r~~~~~~~~~n~~-~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~G-ln-atge 413 (695) .+.+.++++.......|.| .++++ ++-+|+.++.+... +-+......++||.+-+||-.+| |...+| .+ ++-| T Consensus 272 ~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~t~~~sn~e 349 (460) T protein:vir:10 272 ADSLKQRLTEMDKSPDRLSQIAGAS-GEIAFTKISLNTDELKPFDYLKYDQKAICNALGWSDKLL-NNNEGGGLNTGNLE 349 (460) T ss_pred HHHHHHHHHHHhcCccccCCceecC-CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCCCCccccHH Confidence 5566666655444444544 45666 46788888876443 45666677889999999999865 544322 21 3345 Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcC--CCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchh Q lcl|Aclame:pro 414 GEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFG--AVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRP 491 (695) Q Consensus 414 ~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g--~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~ 491 (695) .....||..+ |.|.+..+-+.+-+..+. +...++.++|+- ..+.. .+.+ ..+...++..|+++. T Consensus 350 ~~~~~f~~~~-------l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~-~~l~~-l~~d-----~~~~~~~~~~g~~T~ 415 (460) T protein:vir:10 350 EERKRVVTDN-------IQPDLVILKQAFDKKFIKRFKGYENAVIEWDI-SELPE-MQTD-----MVAMASWLNTIPVTP 415 (460) T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHhhcCcccccCCceEEeec-chhhh-HHHH-----HHHHHHHHhCCCCCH Confidence 4556666543 667776665554443332 233455555531 22211 0111 112233567899999 Q ss_pred hhhhhhhhhhhhh-hhhhhhhhhhhhhhhhhhhhhhh-hhhhhhhhhhccc Q lcl|Aclame:pro 492 DQVAARLNTEPDG-PYAGKLDANDDPGVPADDDIDGV-LTYVQRLAEGGDT 540 (695) Q Consensus 492 ~e~r~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 540 (695) +|+|+.+...+.. ...+.. ...... ..... ............. T Consensus 416 NE~R~~~g~~pi~~~~gD~~----~~~~n~--~~~~~~~~~~~~~~~nq~~ 460 (460) T protein:vir:10 416 NEIRIAMKYETLNQDGMDIV----FMPSNK--VRIDDVSNNLIDSAFNQNQ 460 (460) T ss_pred HHHHHHhCCCCCCCCCCCee----eecccc--cchhhcccccCCCcccCCC Confidence 9999887644321 011000 000000 00000 0000000000000 No 73 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=99.30 E-value=1.1e-11 Score=80.76 Aligned_cols=529 Identities=11% Similarity=0.008 Sum_probs=218.5 Q ss_pred cChhhhHHHHHHHHHhcCCCCcccchhhccccc-----ccccccccccchhhhh---h---hcccc-cCCCCcccccccc Q lcl|Aclame:pro 21 VAKAAALAAAATIATATAAQPVPADMGRRGALN-----ALDAAPVAEPSPSLRL---A---RQFEV-DVSNYTPRERRAA 88 (695) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~ 88 (695) |+||---|. -|.+ ......|.-.+. ..+...+-..+.+.+. + .+... .+-.+..+ ... T Consensus 1 ~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 70 (574) T protein:vir:80 1 MPKWLDKAL--GIEK------SSIEETRNMENYKMHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMS--VNP 70 (574) T ss_pred Ccchhhhhh--ccch------hhHHHHHhhhhhccccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhcc--ccc Confidence 555532221 1111 111111111000 0111111111111110 0 00000 00000000 000 Q ss_pred cccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccc-cccC- Q lcl|Aclame:pro 89 SYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNA-ASTS- 166 (695) Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~-~~~~- 166 (695) .|.......+ .+ .+ ...+..++.+++++.++++.++.+.+--..| .++.-+-+|++-... ..+. T Consensus 71 ~~~~~~~~~~-----~~---~~--~~~l~~~~~~~iv~~~i~~~~~~V~~~~~~i----~~~ia~lp~~i~~kd~~~~~~ 136 (574) T protein:vir:80 71 GYKTKPSIRN-----SQ---DL--HKTLKKFGNNIILNAIINTRSNQVSMYCKPA----RNSETGVGYEIRLKDIEAEPT 136 (574) T ss_pred cccCcCccCC-----cc---cH--HHHHHhhccChhHHHHHHHHHHHHHHHHHHH----HhhhccCceEEEEeccCCCcc Confidence 0110000000 00 01 2345667778999999998887765421111 111111122221000 0000 Q ss_pred --CHHHHHHHHHHHHhhc--------hHHHHHHHHHh-cCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEe Q lcl|Aclame:pro 167 --DGDQLKQINDEIERLR--------IRDAVRTTVIH-DQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVV 235 (695) Q Consensus 167 --~~~~~~~i~~~~~~l~--------~~~~~~~a~~~-~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~ 235 (695) +......+...+.+.. -+..|.+.+.. .-++|.+++++.-+. .|.+.+|.++ T Consensus 137 ~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~r~~-----------------~G~~~~L~pl 199 (574) T protein:vir:80 137 SHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKVFDK-----------------DGNFIKFDTV 199 (574) T ss_pred chhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEECC-----------------CCcEEEEEEE Confidence 1122233444444321 12234444444 446888887765422 2346789999 Q ss_pred cchhccccceecccccccccCCceeEEEc-c---eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 236 EPYWVTPNNYNSINPVADDFYKPSTWWMI-G---TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTR 311 (695) Q Consensus 236 d~~~i~p~~~~~~dp~s~~yg~P~~y~i~-~---~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~ 311 (695) ++..|++.... +... ....+.+|++. + ..+.++.||+|...+.++.+ ....|.|.++.+.+.|.....+. T Consensus 200 ~p~~V~v~~d~--~~~~-~~~~~~y~~~~~g~~~~~~~~~eiih~~~~~~~~~~---~~~~G~spi~~a~~~i~~~~~a~ 273 (574) T protein:vir:80 200 DPTTIFLATNG--EGKL-IKNGERFVQVIDNRIVAKFNERELAFAVRNPRADIE---VGQYGYPELEIALKQFIAHENTE 273 (574) T ss_pred cCceeEEEEcC--cccc-ccCceEEEEEeCCceEEEEccccEEEEeccCCCCcc---cccccccHHHHHHHHHHHHHHHH Confidence 99988874321 1111 11123455553 2 34688889999877655432 34569999999999999999998 Q ss_pred HHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCcee-EEEEcCCceeEEEecccCC--hHHHHHHHH Q lcl|Aclame:pro 312 QSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRNI-LFLDKATEEFFQFNTPLSG--LDALQAQAQ 386 (695) Q Consensus 312 ~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~-~~ld~~~e~~~~~~~~lsg--l~~~~~~~~ 386 (695) .....++..... .+++++....++.+..+.+.+.++..-..-.|.|- .++-.++-+|..++.+..+ +-+...... T Consensus 274 ~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfle~~~~~~ 353 (574) T protein:vir:80 274 VFNDRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFEKWLNYLI 353 (574) T ss_pred HHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHHHHHHHHHHHH Confidence 888887776543 33555544456655555555555443233234543 3443335678887765543 445666678 Q ss_pred HHHHhhhcCCceeeeccCcccccCcchHH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEecccccc Q lcl|Aclame:pro 387 EQMSAVSHIPLIKLLGITPTGLNASSEGE--IRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALREL 464 (695) Q Consensus 387 ~~iaaas~iP~t~L~G~sp~Glnatge~D--~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~ 464 (695) +.||.+.+||-.+|=-.+.+.+.+++.+. ..|.-.......+.-|.|.+.++-..|-+..+......+.|+|+..... T Consensus 354 ~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~f~~~d~~ 433 (574) T protein:vir:80 354 NVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEFGEKYQFQFRGGDLS 433 (574) T ss_pred HHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCceEEEecccchh Confidence 89999999999988322222222222111 1122222223334457888887776665544434445678888876554 Q ss_pred chhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----hhhhh-hhhhhhhhhhc Q lcl|Aclame:pro 465 DDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADD-----DIDGV-LTYVQRLAEGG 538 (695) Q Consensus 465 se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~ 538 (695) +..+... ...+...|+++++|+|..+...+..+................. ..... ........... T Consensus 434 ~~~~~~~--------~~~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (574) T protein:vir:80 434 AQLDKLK--------IIEQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSG 505 (574) T ss_pred hHHHHHH--------HHHHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhccccccccccC Confidence 4433322 1235668999999999987765543321111000000000000 00000 00000000000 Q ss_pred cc-ccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcCCeEEEEEeCC--CceeCCcceeC Q lcl|Aclame:pro 539 DT-GAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPA--GDWGLPAGKVE 606 (695) Q Consensus 539 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~--g~W~lPGG~vE 606 (695) .. ............................ .........---+..+| .|--+.+. +.=+--|=+-| T Consensus 506 ~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 574 (574) T protein:vir:80 506 GDVEQPEPEEPKDSQNDTDVSFQDEQQGLNG-KSKKVNGKVDDNVGKDG-QLKSEENTNSTKHGTDGIKKE 574 (574) T ss_pred CCCCCCCCCCCCCccccccchhhhhhhhhcc-chhhhcCCccccccccc-ccccccccccccccCccccCC Confidence 00 0000000000000000000000000000 00000000000011122 12111110 01111111111 No 74 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=99.25 E-value=4.1e-12 Score=82.99 Aligned_cols=364 Identities=11% Similarity=-0.003 Sum_probs=173.2 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.=..+..... .+|+...+... +...+.. .+...+..++ ....+.+++-+ T Consensus 1 Mglf~~~~~~~----~~~~~~~~~~~------~~~~~~~-----------------~~~~~~~~~v---~~~~al~~~~V 50 (384) T protein:vir:49 1 MPIFNITNLAT----ESPPSNQDSFF------DITDPEF-----------------LDALNGSEWV---SAETALKNSDL 50 (384) T ss_pred CccccccccCc----ccccccchhhc------cccchhh-----------------cccccCCcee---chhhhhccHHH Confidence 33322111100 01111110000 0000000 0000000111 11223467888 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~i 204 (695) .++|+++|+++-.--+++..... ..|...=..+.....|.+.+.... ++|-+++++ T Consensus 51 ~~~i~~Ia~~ia~l~~~~~~~~~-----------------------~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i 107 (384) T protein:vir:49 51 FSIISQLSNDLATAKITTSRKQL-----------------------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYR 107 (384) T ss_pred HHHHHHHHHHHhhCceeeecchh-----------------------hhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEE Confidence 99999999998766555432111 112222222333455555555554 478888776 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--------ceEEchhhEEEe Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--------GTEVHATRLHTI 276 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--------~~~iH~SRli~~ 276 (695) .-+. .|.+.+|.++++..+++.... +. ...+|++. .+.++.+.|||| T Consensus 108 ~r~~-----------------~g~~~~L~~l~~~~v~v~~~~-------~~-~~~~y~~~~~~~~~~~~~~~~~~eVih~ 162 (384) T protein:vir:49 108 WRNE-----------------NGRDMKWEYLRPSQVSFNRLD-------NQ-NGLYYNITFDDPRIPPKQHVPQGDILHF 162 (384) T ss_pred EECC-----------------CCcEEEEEEEcCceeEEEEcC-------CC-ceEEEEEEecCccccceeEecCccEEEe Confidence 6432 234567889999888764321 11 22345543 146889999999 Q ss_pred cCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 277 VSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRD 354 (695) Q Consensus 277 ~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~ 354 (695) ...... ....|.|.+..+.+.+.....+......++..... .+++++. .+..+. ...+..+......+ T Consensus 163 ~~~~~~------~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~--~~~~~~--~~~~~~~~~~~~~n 232 (384) T protein:vir:49 163 RLLSVD------GGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKG--GGLLDF--KTKQSRSRQAMKQM 232 (384) T ss_pred cCCCCC------CceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC--CCChHH--HHHHHHHHHhcccC Confidence 864322 23579999999999999999999988888776544 3445542 222111 11122222223344 Q ss_pred CceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 355 NRNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 355 n~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~ 432 (695) ..+.++++ ++.+|++++.+... +-+......++||.+.+||..+|-+ ...+- ++.+ .++.+|... -...++ T Consensus 233 ~~~~~vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~-~~~~~-~~~~-~~~~~~~~~---i~~~l~ 305 (384) T protein:vir:49 233 QGGPLVLD-DLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGG-EGDKQ-SSLE-MIYNIYFKA---VSRFLR 305 (384) T ss_pred CccceecC-CCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCcc-ccHH-HHHHHHHHH---HHHHHH Confidence 44556676 46789998866554 4466778889999999999887754 32222 3333 223232211 122345 Q ss_pred HHHHHHHHHHHHHhcCCC-----CC--ceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLSLFGAV-----DP--SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGP 505 (695) Q Consensus 433 p~l~~l~~~l~~s~~g~~-----~~--d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~ 505 (695) |.++.+-..+.+..+... ++ .+.+.+..|...+...+ .++...+...|+.+ .++++.....+..+ T Consensus 306 pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~-------~e~~~~l~~~g~~~-ne~r~~~~~~p~~g 377 (384) T protein:vir:49 306 PFVSELSKKLSCEVDADILPAVDPTGSNYIGLINSMVKTGTLAQ-------NQGLYVLQQAEILP-KDLPEGETDSTLKG 377 (384) T ss_pred HHHHHHHHHhchhhhhhhhhhhhccchHHHHHHHHHhhcCcccH-------HHHHHHHhhCCCCC-hhHHHHcCCCCCCC Confidence 555554443322111000 01 11122222222222222 22333344444443 44444433222111 Q ss_pred hhhhhhhhhh Q lcl|Aclame:pro 506 YAGKLDANDD 515 (695) Q Consensus 506 ~~~~~~~~~~ 515 (695) . ...+.+ T Consensus 378 G---d~~~~~ 384 (384) T protein:vir:49 378 G---ETNEQY 384 (384) T ss_pred C---CCCCCC Confidence 1 111111 No 75 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=99.24 E-value=2.7e-11 Score=78.48 Aligned_cols=402 Identities=10% Similarity=0.041 Sum_probs=190.4 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCC-chHHHHHHHhChhhhhHhhcchHHHhhCCceeec Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFP-GFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIG 145 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~ 145 (695) +..|+....... ... ...+ .++....++. ||....++ +++-+..+|+++|++.-+-=+++.. T Consensus 1 m~~~~~~~~~~~---~~~--~~~~-----------~~~~~~~~~~g~~~~~~Al-~~~~V~~cv~~ia~~iA~lp~~~~~ 63 (417) T protein:vir:38 1 MKLFRGLATEVD---PHW--ADHL-----------LDSGVIPSFRGGYLGISAL-RNSDVLTAVSIVSGDVSRFPLVITD 63 (417) T ss_pred CccccccccCCC---ccc--hhhh-----------cccccccccCCceechhhc-ccHHHHHHHHHHHHhhccCeeEEEE Confidence 111111000000 000 0000 0111111111 23322222 5677778899999887654333322 Q ss_pred cchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEEEEEcCCCchhccccCCccccc Q lcl|Aclame:pro 146 GTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYFKIKGDDQIMDTPLVPRPYTV 224 (695) Q Consensus 146 ~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i 224 (695) ...+ ....+......+...=...--...|.+.+.. .-|+|-++++|.-+..+ T Consensus 64 ~~~~-------------~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g-------------- 116 (417) T protein:vir:38 64 SSTD-------------EVIDLANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPIT-------------- 116 (417) T ss_pred cCCc-------------ceeccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCC-------------- Confidence 1100 0001111111222222222233445554444 45678888877532211 Q ss_pred cCcceEEEEEecchhccccceecccccccccCCceeEEEc---c---eEEchhhEEEecCCcchhhhhcccCCCCchHHH Q lcl|Aclame:pro 225 PKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---G---TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQ 298 (695) Q Consensus 225 ~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---~---~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~ 298 (695) |....+.++.+.++++... +. +.. .|++. + ..++++.||||.+..+ ..+.|.|.++ T Consensus 117 --~~~~~l~~l~p~~v~v~~~---~~-----~~~-~y~~~~~~~~~~~~~~~~dviH~r~~~~-------d~~~G~s~l~ 178 (417) T protein:vir:38 117 --NEPAMFEFYAPSQTQVDTS---DP-----DNI-IYRFTPYNSSMQKVCGFEDVIHWKFFSY-------DTIMGRSPLL 178 (417) T ss_pred --CEEEEEEEeCCceEEEEEc---CC-----CeE-EEEEEEcCCcEEEEecCcceEEecCCCC-------CCccccCHHH Confidence 2345677888887765322 11 111 34443 1 3467788999976432 2356999999 Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccC Q lcl|Aclame:pro 299 LAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLS 376 (695) Q Consensus 299 ~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~ls 376 (695) .+.+.|.....+......++...... +++++ ..++.+..+.+.++++......+..+.++++. +.+|+.++.+.. T Consensus 179 ~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~--~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~-g~~~~~l~~~~~ 255 (417) T protein:vir:38 179 SLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKE--SRLSAEARQKIREDFERAQAGADAGSPIIVDA-TMDYQPLEVDTN 255 (417) T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeC--CCCCHHHHHHHHHHHHHHhcccccCCceeccC-CceEEEccCCHH Confidence 99999988888877777766553332 33333 44666666777777776555544444677764 678998876644 Q ss_pred C--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC-CCc Q lcl|Aclame:pro 377 G--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV-DPS 453 (695) Q Consensus 377 g--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d 453 (695) + +-+......+.||.+-+||..+| |.+. -+++.|.-...||. .-|.|.+..+-+.+-+..+... ..+ T Consensus 256 d~q~le~~~~~~~~Ia~~fgVPp~~l-g~~~--~~s~~e~~~~~~~~-------~tl~P~~~~ie~~l~~~Ll~~~~~~~ 325 (417) T protein:vir:38 256 VLNLINSNNYSTAQIAKALRVPAYRL-AQNS--PNQSVKQLADDYIR-------NDLPFYFEPITSEFELKLLDDAQRHQ 325 (417) T ss_pred HHHHHHHHHhhHHHHHHHhCCCHHHh-CCCC--cchhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhcChhhccc Confidence 3 23344455678999999998888 6432 23444544555653 3477877777665554443221 124 Q ss_pred eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhh-hhhhh-hhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 454 IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAG-KLDAN-DDPGVPADDDIDGVLTYV 531 (695) Q Consensus 454 ~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 531 (695) +.|+|+. ..+..... ....+.++.|+++.+|+|+.+...+..+... ..... .................. T Consensus 326 ~~~~fd~-~~l~~~~~--------~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~~~~~~ 396 (417) T protein:vir:38 326 YCIGFDT-KSVNGLPI--------ADVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAEHAAE 396 (417) T ss_pred ceEEech-hhhhHHHH--------HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccccccccccccccccccc Confidence 6677752 22222222 2244567889999999999876655433211 00000 000000000000000000 Q ss_pred hhhhhhcccccccccCCCccchhhhhhhh Q lcl|Aclame:pro 532 QRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (695) ..-+....... .........+ T Consensus 397 ~kgg~~~~~~~--------~~~~~~~~~~ 417 (417) T protein:vir:38 397 LKGGDTNAKGN--------QNGSGTNANS 417 (417) T ss_pred cCCCCCCCCCC--------CcCCCCcCCC Confidence 00000000000 0000000000 No 76 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=99.24 E-value=1.4e-11 Score=80.14 Aligned_cols=398 Identities=11% Similarity=0.030 Sum_probs=189.8 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCC-CCchHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSG-FPGFPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~gy~~~a~~~~~~~ 124 (695) |.-...+....+.....+. . .. ++.. +...++ -..-..-+.+.+++- T Consensus 1 Mg~~~~~~~~~~~~~~~~~--~--------~~------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 48 (423) T protein:vir:81 1 MGFLQKLGLAPSVVATPEP--I--------EL------------VGPI----------FESLKLSTKNMTVEQIWEDQPH 48 (423) T ss_pred CchhHhhccccccccCccc--c--------cc------------cccc----------ccccccccchhhHHHHHHhhhH Confidence 3332222111000000000 0 00 0000 000000 000112234457888 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~ 203 (695) ++++|++.|+++-.--+++.-...+ | . .+......+..|...=..+-.+..|.+++.+. -|+|-++++ T Consensus 49 v~~~i~~ia~~ia~lp~~~~~~~~d-----g-----~-~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~ 117 (423) T protein:vir:81 49 LRTVTTFIARNVASLQLQAFERVED-----G-----G-RERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWL 117 (423) T ss_pred HHHHHHHHHHhHhhCceEEEEEecC-----C-----c-eeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEE Confidence 9999999999987654433111000 0 0 01111111112211222233344555554433 467887776 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE------cc--eEEchhhEEE Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM------IG--TEVHATRLHT 275 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i------~~--~~iH~SRli~ 275 (695) |.- |.. +.+.+..++++....+++.... |. .+.. .|++ .| ..++++.||| T Consensus 118 i~r--d~~-------------~~~~~~~l~p~~~~~v~~~~~~--~~----~~~~-~Y~~~~~~~~~g~~~~~~~~evih 175 (423) T protein:vir:81 118 LPG--DLG-------------VDTPTLDIRPIPVSWVQRRAYK--DG----WGSL-DYIIIESGDNDGRSVKVPGERVIH 175 (423) T ss_pred EEe--cCC-------------cCcceEEEeecccceeeeeecc--CC----Ccce-EEEEEEecCCCceEEEEcccceEE Confidence 543 211 1123444555555555443221 22 2222 2222 33 3578999999 Q ss_pred ecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechH---HhhcchHHHHHHHHHHHHH Q lcl|Aclame:pro 276 IVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLA---QALMPGANVDLSMRAELIN 350 (695) Q Consensus 276 ~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~---~~l~~~~~~~l~~r~~~~~ 350 (695) +.+... ...+.|.|.++.+.+.|.....+......++..... .+++++.. ..++.+..+.+.++++..- T Consensus 176 ~r~~~~------~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~~~~~~~~~~~~~ 249 (423) T protein:vir:81 176 RHGYNP------KTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAESRTRFMANLRASF 249 (423) T ss_pred ecCCCC------CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCHHHHHHHHHHHHHHh Confidence 875432 223469999999999998888888888877655332 35555422 2344444455555554332 Q ss_pred -HhcCCce-eEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHH Q lcl|Aclame:pro 351 -RYRDNRN-ILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAY 426 (695) Q Consensus 351 -~~~~n~~-~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~ 426 (695) ..-+|.| .++++. +.+|+.++.+..+ +-+........||.+-+||..+| |...++-.++.|.-.+.||... T Consensus 250 ~~~~~n~g~~~vl~~-g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~l-g~~~~~t~sn~e~~~~~f~~~~--- 324 (423) T protein:vir:81 250 SPKSSDVGGTLLLED-GMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMV-GQLDNANYSNVREFRKALYGDN--- 324 (423) T ss_pred ccccccCCcceecCC-CceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHh-cCCCCCCcccHHHHHHHHHHHH--- Confidence 2334444 566764 6788888766443 33444566778999999997655 7654443344454455666543 Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCC---CCceeEEe--ccccccchhHHHHHHHHHHHhhhhhh-hhhcchhhhhhhhhhh Q lcl|Aclame:pro 427 QRNALQQLMNDVIVMIQLSLFGAV---DPSIKWQW--NALRELDDLEVAESRYKQAQSDVLYV-QEQVIRPDQVAARLNT 500 (695) Q Consensus 427 Qe~~l~p~l~~l~~~l~~s~~g~~---~~d~~~~f--~pL~~~se~e~Aei~~~~a~~~~~~~-~~g~i~~~e~r~~L~~ 500 (695) |.|.+..+-+-+-+..+... ..++.|+| ..|...+.+++++. ..+++ +.|+++++|+|+.+.. T Consensus 325 ----L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~~~r~~~-------~~~~l~~~G~~T~NE~R~~~gl 393 (423) T protein:vir:81 325 ----LGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASFEEAAEI-------KRAAVGNVAWMTINEVRAMDNL 393 (423) T ss_pred ----HHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccCHHHHHHH-------HHHHHhCCCCcCHHHHHHHhCC Confidence 67777666555544444322 23445555 45556666665443 33333 4689999999987655 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhh Q lcl|Aclame:pro 501 EPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTV 556 (695) Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (695) .+..+........ ......... ... ..... T Consensus 394 ~p~~gGD~~~~p~-----n~~~~~~~~-------------------~~~--~~~~t 423 (423) T protein:vir:81 394 PSIDGGDDLARPL-----NTEFGDSED-------------------APG--EEVET 423 (423) T ss_pred CCCCCcceeeccc-----ccccCccCC-------------------CCC--CCCCC Confidence 4433211110000 000000000 000 00000 No 77 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=99.22 E-value=1.6e-11 Score=79.70 Aligned_cols=395 Identities=12% Similarity=0.005 Sum_probs=186.0 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |+-.+++.... . +.+..-..+..+.+-..|-....+ +++-+ T Consensus 1 m~~f~~~~~~~---~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~Al-~~~~V 41 (406) T protein:vir:97 1 MSFFQPLGTSK---V-----------------------------------SYDDYISSVLAGDVSQKYLGVSAL-KNSDI 41 (406) T ss_pred CccccccCCCC---C-----------------------------------CcchHHHHHhcCCCCcccccchhh-ccHHH Confidence 22222111100 0 000000011111111111111111 35566 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHH-HHHhcCccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRT-TVIHDQAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~-a~~~~Rl~G~~~i~i 204 (695) ..+|+++|+++-.-=+...... | ....+......|...=..+--+..|.+ .+.+--|+|-+++++ T Consensus 42 ~~~i~~Ia~~iA~lp~~~~~~~-------g-------~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i 107 (406) T protein:vir:97 42 LTATSIIAGDIARFPLVKKDVN-------G-------DIIHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRI 107 (406) T ss_pred HHHHHHHHHhhhhCeeEEEecC-------c-------cccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEE Confidence 7788888888765422221110 0 000011122222211112222334444 344445688888876 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc----c--eEEchhhEEEecC Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI----G--TEVHATRLHTIVS 278 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~----~--~~iH~SRli~~~~ 278 (695) .-++ ..|.+..|.++++.++++... + .+.+ .|++. + ..+.++.||||.+ T Consensus 108 ~r~~----------------~~g~~~~L~~i~p~~v~v~~~---~-----~~~~-~y~~~~~~~~~~~~~~~~evih~r~ 162 (406) T protein:vir:97 108 LRDP----------------KTNQALQFQFYRPSETTVEET---D-----NHEI-VYTFTDMLTAKQVKCFAHDVIHWKF 162 (406) T ss_pred EecC----------------CCCeEEEEEEECCCeeEEEEc---C-----CceE-EEEEEecCCceEEEEccccEEEecC Confidence 5321 123456788888888876322 1 1222 33442 3 3567899999975 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc-ceeeechHHhhcchHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV-SGILMDLAQALMPGANVDLSMRAELINRYRDNRN 357 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~-~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~ 357 (695) .+. ..+.|.|.++.+.+.|.....+......++..... .++.+. ...++.+..+.+.++++......++.+ T Consensus 163 ~~~-------dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~-~~~l~~e~~~~~~~~~~~~~~g~n~g~ 234 (406) T protein:vir:97 163 FSH-------DTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMK-GAQLSGDARQRARQEFEKMREGSVGGS 234 (406) T ss_pred CCC-------CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEec-CCCCCHHHHHHHHHHHHHHhcccccCc Confidence 431 23459999999999888877777777775544222 233222 234555555667777766554443445 Q ss_pred eEEEEcCCceeEEEecccCChH--HHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHH Q lcl|Aclame:pro 358 ILFLDKATEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLM 435 (695) Q Consensus 358 ~~~ld~~~e~~~~~~~~lsgl~--~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l 435 (695) .++++. +.+|++++.+..... +......+.||.+-+||-.+|-+.+ . +++.+.-.++||.. -|.|.+ T Consensus 235 ~~vl~~-g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~-~--~~~~e~~~~~f~~~-------~l~P~~ 303 (406) T protein:vir:97 235 PLVFDS-TMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNS-P--NQSVAQLMEDYVTN-------DLPFYF 303 (406) T ss_pred eeecCC-CceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCC-C--cchHHHHHHHHHHH-------HHHHHH Confidence 667774 678999876543322 4445557889999999999995422 2 23334445556543 377777 Q ss_pred HHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 436 NDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDAND 514 (695) Q Consensus 436 ~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~ 514 (695) ..+-+-+-+..+... ...+.++|+- ..+ ....+++..+++..|+++.+|+|..+...+..+.... .. T Consensus 304 ~~ie~~l~~kll~~~~~~~~~i~fd~-~~~--------~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD---~~ 371 (406) T protein:vir:97 304 DAITSELGLKTLNDKDRRLYHIEFDT-RSV--------TGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMD---RY 371 (406) T ss_pred HHHHHHHhhhhcChhhccceeEEEec-Ccc--------chhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCC---eE Confidence 776665544333211 1245566652 111 1223455667888999999999998865543221100 00 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhh Q lcl|Aclame:pro 515 DPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTV 556 (695) Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (695) ................... ..... . .......... T Consensus 372 ~~~~n~~~~~~~~~~~~~~-~~~~~----g--g~~~~~~~~~ 406 (406) T protein:vir:97 372 QSSLNYVFLDKKEEYQDKV-GIKGK----G--GEVNAEEDKS 406 (406) T ss_pred eeccCccchhccccccccc-ccccC----C--CCCCCCCCCC Confidence 0000000000000000000 00000 0 0000000000 No 78 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=99.22 E-value=1.9e-11 Score=79.33 Aligned_cols=372 Identities=13% Similarity=0.011 Sum_probs=190.2 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.-.+...... ..|..+...+..+. +. .+ ..+.. +-.++ ....+.+++.+ T Consensus 1 M~~f~~~~~~~----~~~~~~~~~~~~~~------------~~----~~-------~~~~~--~~~~v-~~~~~~~~~~v 50 (386) T protein:vir:48 1 MPIFNITNLAT----ESPPISQGGFFDIT------------DP----DF-------LSTLN--GSEWV-SAESALRNSDL 50 (386) T ss_pred Ccccccccccc----cccccccccccccc------------cc----hh-------ccccc--CCcee-chhhhhcchHH Confidence 44433322111 11111111110000 00 00 00000 00001 11223467889 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~i 204 (695) .++|+++++++-.-=+++... ....+...-...--+..|.+.+.+. -++|-+++++ T Consensus 51 ~~~i~~ia~~ia~~p~~~~~~-----------------------~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i 107 (386) T protein:vir:48 51 FSIINQLSNDLATVKLTASRK-----------------------QLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYR 107 (386) T ss_pred HHHHHHHHHhhccCceeeccc-----------------------hhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEE Confidence 999999998875432332211 1111222222222344455554444 5578788776 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c------eEEchhhEEEe Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G------TEVHATRLHTI 276 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~------~~iH~SRli~~ 276 (695) .-+. .|.+.+|.++++.++++.... .+.+.+|+|. + +.+-++.|||| T Consensus 108 ~r~~-----------------~g~~~~L~~l~~~~v~v~~~~--------~~~~~~y~~~~~~~~~~~~~~~~~~evih~ 162 (386) T protein:vir:48 108 WRNE-----------------NGRDMKWEYLRPSQVSFNRLD--------NKDGIYYNITFDDPRIPPKQHVPQGDVLHF 162 (386) T ss_pred EECC-----------------CCcEEEEEEecCceeEEEEcC--------CCceEEEEEEecCccccceeEecCccEEEe Confidence 5421 234567888888888764321 2344566553 2 23556778888 Q ss_pred cCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 277 VSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRD 354 (695) Q Consensus 277 ~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~ 354 (695) ..... ...+.|.|.++.+...|.....+......++...... +++++ ..+..+....+.+ .+..+.. T Consensus 163 ~~~~~------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~--~~~~~e~~~~~~~---~~~~~~~ 231 (386) T protein:vir:48 163 KLLSV------DGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIK--GGGLLDFKTKLSR---SRQAMKQ 231 (386) T ss_pred cCCCC------CCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC--CCCCHHHHHHHHH---HHHHhhc Confidence 75432 2235799999999999999888888888877764443 33333 2344333333333 3334444 Q ss_pred Cc-eeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 355 NR-NILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNAL 431 (695) Q Consensus 355 n~-~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l 431 (695) |. +.++++ ++.+|+.++.+... +-+......+.||++.+||-.+| |.+ +-+++.+....+||... | T Consensus 232 n~g~~~vl~-~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~--~~~~~~e~~~~~~~~~~-------l 300 (386) T protein:vir:48 232 MQGGPLVLD-DLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVV-GGQ--GDQQSSLEMSLDLYNKA-------V 300 (386) T ss_pred CCCCceecC-CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCC--CCcccHHHHHHHHHHHH-------H Confidence 44 456676 46789998876543 45667888899999999998877 543 22345565666666443 7 Q ss_pred hHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 432 QQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 432 ~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) .|.+..+-+.+-+..+. ++.+.+.++..++.... +.....++..|.++..|+++.+...+..+.. ... T Consensus 301 ~P~~~~ie~~l~~~l~~----~~~~~~~~~~~~d~~~~-------~~~~~~l~~~g~~t~nE~r~~lg~~~~~~~~-~~~ 368 (386) T protein:vir:48 301 SRYLRPFLSELSQKLSC----DVDADILPAVDPTGSNS-------VSRINSMVKSGTLAQNQGLYILQQAEILPKE-LPE 368 (386) T ss_pred HHHHHHHHHHHHHhhcc----hhhcchhhhhccChHHH-------HHHHHHHHhCCCcCHHHHHHHhhcCCCCCcc-chh Confidence 78777776666544432 23333333333333222 3445667888999999999877544422110 000 Q ss_pred hhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 512 ANDDPGVPADDDIDGVLT 529 (695) Q Consensus 512 ~~~~~~~~~~~~~~~~~~ 529 (695) .................. T Consensus 369 ~~~~~~~~~~gGd~~~~~ 386 (386) T protein:vir:48 369 GENPNKTTLKGGEINGED 386 (386) T ss_pred hcCCCCCccCCCCCCCCC Confidence 000000000000000000 No 79 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=99.22 E-value=3.7e-11 Score=77.75 Aligned_cols=420 Identities=11% Similarity=0.083 Sum_probs=193.0 Q ss_pred hhhcccc-cccccccccccchh---hhhhhcccccCCCCcccccccccccccccccchhhh-hhhccCCCCchHHHHHHH Q lcl|Aclame:pro 46 MGRRGAL-NALDAAPVAEPSPS---LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGFPTLVLLA 120 (695) Q Consensus 46 ~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~gy~~~a~~~ 120 (695) |-=-+.- ...+.+..-.+... +..|..++.+ +..........-...+ ++. +.+...|.....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al- 68 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKR----------DLQYNEDDLQMMVQTLPGFQ-GTKLRQYKDIEAI- 68 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccc----------cccCCCcchHHHHHHhcccC-cccccccchhhhh- Confidence 3222220 00111111111111 1112212211 1100000000000000 000 0111112222222 Q ss_pred hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccce Q lcl|Aclame:pro 121 QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGR 199 (695) Q Consensus 121 ~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~ 199 (695) +++-+.++|+++|++.-.-=+++... | ....+......|..+=..+--...|.+.+.+ .-++|- T Consensus 69 ~~~~V~~cv~~Ia~~iA~lp~~~~~~--------~-------~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn 133 (441) T protein:vir:94 69 RHSDIFTAVMMIASDLARMPIRVTVN--------G-------QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSH 133 (441) T ss_pred ccHHHHHHHHHHHHhhccCceeeecC--------c-------cccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCC Confidence 34456668888888765443333211 0 0001111122222221222223344444443 456898 Q ss_pred EEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEE--Ecc------eEEchh Q lcl|Aclame:pro 200 AHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW--MIG------TEVHAT 271 (695) Q Consensus 200 ~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~--i~~------~~iH~S 271 (695) +++++.-+ ..|.+.+|.++++..+++.. |. .|.+.++. +.+ +.++++ T Consensus 134 ay~~i~r~-----------------~~G~~~~L~~i~~~~v~v~~----d~----~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (441) T protein:vir:94 134 GYIEITRD-----------------KTGEPMNLTFRKTSEIELKS----DA----RGRLYYFHQRIDSNGNNIERNVKFE 188 (441) T ss_pred eEEEEEEC-----------------CCCcEEEEEEEcCceeEEEE----CC----CccEEEEEEEeccCCceeEEEEccc Confidence 88776532 12456778899988887632 21 23443332 211 357889 Q ss_pred hEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcc-hHHHHHHHHHHH Q lcl|Aclame:pro 272 RLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMP-GANVDLSMRAEL 348 (695) Q Consensus 272 Rli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~-~~~~~l~~r~~~ 348 (695) .||||...++ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..+.+ +..+.+.++++. T Consensus 189 dvih~k~~~~-------dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~~~~~e~~e~~r~~~~~ 259 (441) T protein:vir:94 189 DMLDIKFYSL-------DGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK--GVLDNKKARDRAREEFHK 259 (441) T ss_pred cEEEeccCCC-------CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC--CCCCCHHHHHHHHHHHHH Confidence 9999876432 23569999999999998888888877777666443 344554 33332 222344444443 Q ss_pred HHHhcCC-ceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHH Q lcl|Aclame:pro 349 INRYRDN-RNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRA 425 (695) Q Consensus 349 ~~~~~~n-~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~ 425 (695) ....-.| .++++++. +.+|+.++.+.. .+-+......+.||.+.+||...| |...++.+ -+ +...+|- T Consensus 260 ~~~G~~nag~~~vl~~-G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~s--~~-q~~~~~~---- 330 (441) T protein:vir:94 260 SFSGTKQAGKVVVLDE-SMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKF-GIETANMS--IT-DANLDYL---- 330 (441) T ss_pred HhcCccccCcceecCC-CceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHc-CCCCCCcc--HH-HHHHHHH---- Confidence 3222223 34677764 678999876644 345666677889999999999876 76544432 22 3333322 Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhh Q lcl|Aclame:pro 426 YQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDG 504 (695) Q Consensus 426 ~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~ 504 (695) .-|.|.+..+-.-+-+..+... ...+.|.+..|...+.+++ ++...+++..|+++++|+|..+...+.. T Consensus 331 ---~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~-------~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ 400 (441) T protein:vir:94 331 ---STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQ-------AEIDKINIDSGKMNIDEIRQRDGLAPIP 400 (441) T ss_pred ---HHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 1367777776655544332111 1234455556666666655 5567777888999999999887665543 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 505 PYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) +........... ............ ....... .......... T Consensus 401 ggd~~~~~~~~n--~~~~~~~~~~~~-----~~~~~~~-~~~kgGe~~e 441 (441) T protein:vir:94 401 GGNGSIHRVDLN--HVNIELVDEYQM-----NKSRATD-KKLKGGEENE 441 (441) T ss_pred CCCcceEeeccc--cccccccccccc-----ccccccc-cccCCCCCCC Confidence 322111000000 000000000000 0000000 0000000000 No 80 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=99.22 E-value=3.7e-11 Score=77.75 Aligned_cols=420 Identities=11% Similarity=0.083 Sum_probs=193.0 Q ss_pred hhhcccc-cccccccccccchh---hhhhhcccccCCCCcccccccccccccccccchhhh-hhhccCCCCchHHHHHHH Q lcl|Aclame:pro 46 MGRRGAL-NALDAAPVAEPSPS---LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGFPTLVLLA 120 (695) Q Consensus 46 ~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~gy~~~a~~~ 120 (695) |-=-+.- ...+.+..-.+... +..|..++.+ +..........-...+ ++. +.+...|.....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al- 68 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKR----------DLQYNEDDLQMMVQTLPGFQ-GTKLRQYKDIEAI- 68 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccc----------cccCCCcchHHHHHHhcccC-cccccccchhhhh- Confidence 3222220 00111111111111 1112212211 1100000000000000 000 0111112222222 Q ss_pred hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccce Q lcl|Aclame:pro 121 QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGR 199 (695) Q Consensus 121 ~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~ 199 (695) +++-+.++|+++|++.-.-=+++... | ....+......|..+=..+--...|.+.+.+ .-++|- T Consensus 69 ~~~~V~~cv~~Ia~~iA~lp~~~~~~--------~-------~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn 133 (441) T protein:vir:79 69 RHSDIFTAVMMIASDLARMPIRVTVN--------G-------QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSH 133 (441) T ss_pred ccHHHHHHHHHHHHhhccCceeeecC--------c-------cccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCC Confidence 34456668888888765443333211 0 0001111122222221222223344444443 456898 Q ss_pred EEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEE--Ecc------eEEchh Q lcl|Aclame:pro 200 AHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW--MIG------TEVHAT 271 (695) Q Consensus 200 ~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~--i~~------~~iH~S 271 (695) +++++.-+ ..|.+.+|.++++..+++.. |. .|.+.++. +.+ +.++++ T Consensus 134 ay~~i~r~-----------------~~G~~~~L~~i~~~~v~v~~----d~----~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (441) T protein:vir:79 134 GYIEITRD-----------------KTGEPMNLTFRKTSEIELKS----DA----RGRLYYFHQRIDSNGNNIERNVKFE 188 (441) T ss_pred eEEEEEEC-----------------CCCcEEEEEEEcCceeEEEE----CC----CccEEEEEEEeccCCceeEEEEccc Confidence 88776532 12456778899988887632 21 23443332 211 357889 Q ss_pred hEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcc-hHHHHHHHHHHH Q lcl|Aclame:pro 272 RLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMP-GANVDLSMRAEL 348 (695) Q Consensus 272 Rli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~-~~~~~l~~r~~~ 348 (695) .||||...++ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..+.+ +..+.+.++++. T Consensus 189 dvih~k~~~~-------dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~~~~~e~~e~~r~~~~~ 259 (441) T protein:vir:79 189 DMLDIKFYSL-------DGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK--GVLDNKKARDRAREEFHK 259 (441) T ss_pred cEEEeccCCC-------CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC--CCCCCHHHHHHHHHHHHH Confidence 9999876432 23569999999999998888888877777666443 344554 33332 222344444443 Q ss_pred HHHhcCC-ceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHH Q lcl|Aclame:pro 349 INRYRDN-RNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRA 425 (695) Q Consensus 349 ~~~~~~n-~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~ 425 (695) ....-.| .++++++. +.+|+.++.+.. .+-+......+.||.+.+||...| |...++.+ -+ +...+|- T Consensus 260 ~~~G~~nag~~~vl~~-G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~~~~s--~~-q~~~~~~---- 330 (441) T protein:vir:79 260 SFSGTKQAGKVVVLDE-SMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKF-GIETANMS--IT-DANLDYL---- 330 (441) T ss_pred HhcCccccCcceecCC-CceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHc-CCCCCCcc--HH-HHHHHHH---- Confidence 3222223 34677764 678999876644 345666677889999999999876 76544432 22 3333322 Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhh Q lcl|Aclame:pro 426 YQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDG 504 (695) Q Consensus 426 ~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~ 504 (695) .-|.|.+..+-.-+-+..+... ...+.|.+..|...+.+++ ++...+++..|+++++|+|..+...+.. T Consensus 331 ---~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D~~~~-------~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ 400 (441) T protein:vir:79 331 ---STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVDEKTQ-------AEIDKINIDSGKMNIDEIRQRDGLAPIP 400 (441) T ss_pred ---HHHHHHHHHHHHHHhhhccccccCceEEeechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 1367777776655544332111 1234455556666666655 5567777888999999999887665543 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 505 PYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) +........... ............ ....... .......... T Consensus 401 ggd~~~~~~~~n--~~~~~~~~~~~~-----~~~~~~~-~~~kgGe~~e 441 (441) T protein:vir:79 401 GGNGSIHRVDLN--HVNIELVDEYQM-----NKSRATD-KKLKGGEENE 441 (441) T ss_pred CCCcceEeeccc--cccccccccccc-----ccccccc-cccCCCCCCC Confidence 322111000000 000000000000 0000000 0000000000 No 81 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=99.22 E-value=1.4e-11 Score=80.17 Aligned_cols=377 Identities=10% Similarity=0.051 Sum_probs=173.0 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..|..+- .+......++....+.+ -....+.+++.++++|+++|++.-.--+.+... T Consensus 1 Mg~f~~lf---------------------~~~~~~~~~~~~~~~~~-v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~ 58 (395) T protein:vir:95 1 MSILEKIF---------------------KTRKDITYMLDLDMIED-LSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEG 58 (395) T ss_pred Cchhhhhh---------------------ccCccccccccchhccc-cchhhhhhhHHHHHHHHHHHHhhccceeEeccC Confidence 22221110 00000000010011111 112345578899999999999987654333211 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccC Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPK 226 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~ 226 (695) +...+.+....|...=..+-.+..|.+++...-++||.+.++...+.+ T Consensus 59 ----------------~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~---------------- 106 (395) T protein:vir:95 59 ----------------NRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKE---------------- 106 (395) T ss_pred ----------------CccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCC---------------- Confidence 011122222333333334445566666666666777766554432211 Q ss_pred cceEEEEEecchhccccceecccccccccCCceeEEEc----ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHH Q lcl|Aclame:pro 227 GSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI----GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMP 302 (695) Q Consensus 227 g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~----~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~ 302 (695) +.+++.+.+++... .++. ...+.+. .+.+.++.||||..... .....|.|.++.+.. T Consensus 107 -----~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~evih~~~~~~------~~~~~G~spi~~~~~ 167 (395) T protein:vir:95 107 -----LLIADSFYREEYAL------YDDI--FKDVTVKDYTYQRTFTMQEVIYLKYNNN------KVTHFVESLFEDYGK 167 (395) T ss_pred -----eEecCCccceeEee------cCcc--eeEEEEcCceeeeeeccccEEEEccCCC------CcccccchHHHHHHH Confidence 11112211111100 0000 0011111 14577889998875432 234569998887766 Q ss_pred HHHHHHHHhHHHHHHHHHhccc-eeeechHHhhcchHHHHHHHHHHHHHHhcCCce-eEE-EEcCCceeEEEecccCC-- Q lcl|Aclame:pro 303 YIDNWLRTRQSVSDIVKQFSVS-GILMDLAQALMPGANVDLSMRAELINRYRDNRN-ILF-LDKATEEFFQFNTPLSG-- 377 (695) Q Consensus 303 ~l~~~~~~~~~~~~l~~~~~~~-v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~-~~~-ld~~~e~~~~~~~~lsg-- 377 (695) .+...... ........ ++++. ...++.+..+.+.+.++......++.+ .++ ++ ++.+|+.++.+-.+ T Consensus 168 ~~~~~~~~------~~~~~~~~gii~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~-~g~~~~~l~~~~~~~~ 239 (395) T protein:vir:95 168 IFGRMIGA------QLKNYQIRGILKSA-SSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLI-EGFDYEELSNGGKNSN 239 (395) T ss_pred HHHHHHHH------HHhcCCCceEEEeC-CCCCCHHHHHHHHHHHHHHhccccccCcceEEcC-CCceeeeccccccccc Confidence 65433221 11222222 22332 122344444444444443322222223 233 45 46788888766543 Q ss_pred -----hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC-- Q lcl|Aclame:pro 378 -----LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV-- 450 (695) Q Consensus 378 -----l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~-- 450 (695) +-+......++||.+.+||-.+|-| -.++-|...++||.. -|.|.+..+-..+-+..++.. T Consensus 240 ~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~-----~~sn~e~~~~~~~~~-------~l~P~~~~ie~~l~~kL~~~~~~ 307 (395) T protein:vir:95 240 MPFSELSELMRDAIKNVALMIGIPPGLIYG-----ETADLEKNTLVFEKF-------CLTPLLKKIQNELNAKLITQSMY 307 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcC-----cccCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcChhhh Confidence 3344456667899999999998833 233446566777753 378888777766655544422 Q ss_pred CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhh-hh-hhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 451 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYA-GK-LDANDDPGVPADDDIDGVL 528 (695) Q Consensus 451 ~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 528 (695) ...+.|.++.|...+.+++ +++...++..|+++++|+|..+...+..+.. +. ................... T Consensus 308 ~~~~~f~~~~l~~~D~~~~-------~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~ 380 (395) T protein:vir:95 308 LKDTRIEIVGVNKKDPLQY-------AEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEK 380 (395) T ss_pred cccceecchhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcc Confidence 2245677777777777665 4566667788999999999887654443221 00 0000000000000000000 Q ss_pred hhhhhhhhhcccccccccCCCccchhh Q lcl|Aclame:pro 529 TYVQRLAEGGDTGAPGGARAGATAPPT 555 (695) Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (695) ......+ ........ T Consensus 381 ~~~~~kg------------g~~~~~g~ 395 (395) T protein:vir:95 381 DENTLKG------------GDEDESGD 395 (395) T ss_pred cccccCC------------CCCCCCCC Confidence 0000000 00000000 No 82 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=99.22 E-value=1.4e-11 Score=80.17 Aligned_cols=377 Identities=10% Similarity=0.051 Sum_probs=173.0 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..|..+- .+......++....+.+ -....+.+++.++++|+++|++.-.--+.+... T Consensus 1 Mg~f~~lf---------------------~~~~~~~~~~~~~~~~~-v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~ 58 (395) T protein:vir:10 1 MSILEKIF---------------------KTRKDITYMLDLDMIED-LSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEG 58 (395) T ss_pred Cchhhhhh---------------------ccCccccccccchhccc-cchhhhhhhHHHHHHHHHHHHhhccceeEeccC Confidence 22221110 00000000010011111 112345578899999999999987654333211 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccC Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPK 226 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~ 226 (695) +...+.+....|...=..+-.+..|.+++...-++||.+.++...+.+ T Consensus 59 ----------------~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~---------------- 106 (395) T protein:vir:10 59 ----------------NRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKE---------------- 106 (395) T ss_pred ----------------CccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCC---------------- Confidence 011122222333333334445566666666666777766554432211 Q ss_pred cceEEEEEecchhccccceecccccccccCCceeEEEc----ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHH Q lcl|Aclame:pro 227 GSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI----GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMP 302 (695) Q Consensus 227 g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~----~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~ 302 (695) +.+++.+.+++... .++. ...+.+. .+.+.++.||||..... .....|.|.++.+.. T Consensus 107 -----~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~evih~~~~~~------~~~~~G~spi~~~~~ 167 (395) T protein:vir:10 107 -----LLIADSFYREEYAL------YDDI--FKDVTVKDYTYQRTFTMQEVIYLKYNNN------KVTHFVESLFEDYGK 167 (395) T ss_pred -----eEecCCccceeEee------cCcc--eeEEEEcCceeeeeeccccEEEEccCCC------CcccccchHHHHHHH Confidence 11112211111100 0000 0011111 14577889998875432 234569998887766 Q ss_pred HHHHHHHHhHHHHHHHHHhccc-eeeechHHhhcchHHHHHHHHHHHHHHhcCCce-eEE-EEcCCceeEEEecccCC-- Q lcl|Aclame:pro 303 YIDNWLRTRQSVSDIVKQFSVS-GILMDLAQALMPGANVDLSMRAELINRYRDNRN-ILF-LDKATEEFFQFNTPLSG-- 377 (695) Q Consensus 303 ~l~~~~~~~~~~~~l~~~~~~~-v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~-~~~-ld~~~e~~~~~~~~lsg-- 377 (695) .+...... ........ ++++. ...++.+..+.+.+.++......++.+ .++ ++ ++.+|+.++.+-.+ T Consensus 168 ~~~~~~~~------~~~~~~~~gii~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~-~g~~~~~l~~~~~~~~ 239 (395) T protein:vir:10 168 IFGRMIGA------QLKNYQIRGILKSA-SSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLI-EGFDYEELSNGGKNSN 239 (395) T ss_pred HHHHHHHH------HHhcCCCceEEEeC-CCCCCHHHHHHHHHHHHHHhccccccCcceEEcC-CCceeeeccccccccc Confidence 65433221 11222222 22332 122344444444444443322222223 233 45 46788888766543 Q ss_pred -----hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC-- Q lcl|Aclame:pro 378 -----LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV-- 450 (695) Q Consensus 378 -----l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~-- 450 (695) +-+......++||.+.+||-.+|-| -.++-|...++||.. -|.|.+..+-..+-+..++.. T Consensus 240 ~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~-----~~sn~e~~~~~~~~~-------~l~P~~~~ie~~l~~kL~~~~~~ 307 (395) T protein:vir:10 240 MPFSELSELMRDAIKNVALMIGIPPGLIYG-----ETADLEKNTLVFEKF-------CLTPLLKKIQNELNAKLITQSMY 307 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcC-----cccCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcChhhh Confidence 3344456667899999999998833 233446566777753 378888777766655544422 Q ss_pred CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhh-hh-hhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 451 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYA-GK-LDANDDPGVPADDDIDGVL 528 (695) Q Consensus 451 ~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 528 (695) ...+.|.++.|...+.+++ +++...++..|+++++|+|..+...+..+.. +. ................... T Consensus 308 ~~~~~f~~~~l~~~D~~~~-------~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~ 380 (395) T protein:vir:10 308 LKDTRIEIVGVNKKDPLQY-------AEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEK 380 (395) T ss_pred cccceecchhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcc Confidence 2245677777777777665 4566667788999999999887654443221 00 0000000000000000000 Q ss_pred hhhhhhhhhcccccccccCCCccchhh Q lcl|Aclame:pro 529 TYVQRLAEGGDTGAPGGARAGATAPPT 555 (695) Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (695) ......+ ........ T Consensus 381 ~~~~~kg------------g~~~~~g~ 395 (395) T protein:vir:10 381 DENTLKG------------GDEDESGD 395 (395) T ss_pred cccccCC------------CCCCCCCC Confidence 0000000 00000000 No 83 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=99.22 E-value=1.4e-11 Score=80.17 Aligned_cols=377 Identities=10% Similarity=0.051 Sum_probs=173.0 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..|..+- .+......++....+.+ -....+.+++.++++|+++|++.-.--+.+... T Consensus 1 Mg~f~~lf---------------------~~~~~~~~~~~~~~~~~-v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~ 58 (395) T protein:vir:10 1 MSILEKIF---------------------KTRKDITYMLDLDMIED-LSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEG 58 (395) T ss_pred Cchhhhhh---------------------ccCccccccccchhccc-cchhhhhhhHHHHHHHHHHHHhhccceeEeccC Confidence 22221110 00000000010011111 112345578899999999999987654333211 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccC Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPK 226 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~ 226 (695) +...+.+....|...=..+-.+..|.+++...-++||.+.++...+.+ T Consensus 59 ----------------~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~---------------- 106 (395) T protein:vir:10 59 ----------------NRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKE---------------- 106 (395) T ss_pred ----------------CccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCC---------------- Confidence 011122222333333334445566666666666777766554432211 Q ss_pred cceEEEEEecchhccccceecccccccccCCceeEEEc----ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHH Q lcl|Aclame:pro 227 GSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI----GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMP 302 (695) Q Consensus 227 g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~----~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~ 302 (695) +.+++.+.+++... .++. ...+.+. .+.+.++.||||..... .....|.|.++.+.. T Consensus 107 -----~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~evih~~~~~~------~~~~~G~spi~~~~~ 167 (395) T protein:vir:10 107 -----LLIADSFYREEYAL------YDDI--FKDVTVKDYTYQRTFTMQEVIYLKYNNN------KVTHFVESLFEDYGK 167 (395) T ss_pred -----eEecCCccceeEee------cCcc--eeEEEEcCceeeeeeccccEEEEccCCC------CcccccchHHHHHHH Confidence 11112211111100 0000 0011111 14577889998875432 234569998887766 Q ss_pred HHHHHHHHhHHHHHHHHHhccc-eeeechHHhhcchHHHHHHHHHHHHHHhcCCce-eEE-EEcCCceeEEEecccCC-- Q lcl|Aclame:pro 303 YIDNWLRTRQSVSDIVKQFSVS-GILMDLAQALMPGANVDLSMRAELINRYRDNRN-ILF-LDKATEEFFQFNTPLSG-- 377 (695) Q Consensus 303 ~l~~~~~~~~~~~~l~~~~~~~-v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~-~~~-ld~~~e~~~~~~~~lsg-- 377 (695) .+...... ........ ++++. ...++.+..+.+.+.++......++.+ .++ ++ ++.+|+.++.+-.+ T Consensus 168 ~~~~~~~~------~~~~~~~~gii~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~-~g~~~~~l~~~~~~~~ 239 (395) T protein:vir:10 168 IFGRMIGA------QLKNYQIRGILKSA-SSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLI-EGFDYEELSNGGKNSN 239 (395) T ss_pred HHHHHHHH------HHhcCCCceEEEeC-CCCCCHHHHHHHHHHHHHHhccccccCcceEEcC-CCceeeeccccccccc Confidence 65433221 11222222 22332 122344444444444443322222223 233 45 46788888766543 Q ss_pred -----hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC-- Q lcl|Aclame:pro 378 -----LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV-- 450 (695) Q Consensus 378 -----l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~-- 450 (695) +-+......++||.+.+||-.+|-| -.++-|...++||.. -|.|.+..+-..+-+..++.. T Consensus 240 ~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~-----~~sn~e~~~~~~~~~-------~l~P~~~~ie~~l~~kL~~~~~~ 307 (395) T protein:vir:10 240 MPFSELSELMRDAIKNVALMIGIPPGLIYG-----ETADLEKNTLVFEKF-------CLTPLLKKIQNELNAKLITQSMY 307 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcC-----cccCHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcChhhh Confidence 3344456667899999999998833 233446566777753 378888777766655544422 Q ss_pred CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhh-hh-hhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 451 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYA-GK-LDANDDPGVPADDDIDGVL 528 (695) Q Consensus 451 ~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 528 (695) ...+.|.++.|...+.+++ +++...++..|+++++|+|..+...+..+.. +. ................... T Consensus 308 ~~~~~f~~~~l~~~D~~~~-------~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~ 380 (395) T protein:vir:10 308 LKDTRIEIVGVNKKDPLQY-------AEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEK 380 (395) T ss_pred cccceecchhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcc Confidence 2245677777777777665 4566667788999999999887654443221 00 0000000000000000000 Q ss_pred hhhhhhhhhcccccccccCCCccchhh Q lcl|Aclame:pro 529 TYVQRLAEGGDTGAPGGARAGATAPPT 555 (695) Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (695) ......+ ........ T Consensus 381 ~~~~~kg------------g~~~~~g~ 395 (395) T protein:vir:10 381 DENTLKG------------GDEDESGD 395 (395) T ss_pred cccccCC------------CCCCCCCC Confidence 0000000 00000000 No 84 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=99.21 E-value=2.1e-11 Score=79.14 Aligned_cols=393 Identities=11% Similarity=0.043 Sum_probs=186.8 Q ss_pred CCccccccccccccc-ccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCcc Q lcl|Aclame:pro 79 NYTPRERRAASYALD-FNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLA 157 (695) Q Consensus 79 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~ 157 (695) +|-.+.... ..... ........+ .....+.++..-..|..++.+.++|+++|++.-.-=+++.......... T Consensus 1 mg~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~~~~---- 73 (403) T protein:vir:10 1 MGFKSWITE-KLNPGQRIIRDMEPV--SHRTNRKPFTTGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIVTYA---- 73 (403) T ss_pred Ccchhhhhh-ccchhhhhhhccccc--ccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhCceeEeecccccccc---- Confidence 111111000 00000 000000001 1112334444445666788899999999988765433432111000000 Q ss_pred ccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEec Q lcl|Aclame:pro 158 AGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVE 236 (695) Q Consensus 158 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d 236 (695) ....+......|...=...--...|.+.+.+.. |+|-+++++. ++. + .|+ . T Consensus 74 -----~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~--~~~--l-~~l------------------~ 125 (403) T protein:vir:10 74 -----NGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWD--GTS--L-YHV------------------P 125 (403) T ss_pred -----cccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEe--Cce--e-Eee------------------c Confidence 000011111122221122333456666666555 5777776542 111 1 122 1 Q ss_pred chhccccceecccccccccCCceeE-EEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH Q lcl|Aclame:pro 237 PYWVTPNNYNSINPVADDFYKPSTW-WMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 315 (695) Q Consensus 237 ~~~i~p~~~~~~dp~s~~yg~P~~y-~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~ 315 (695) +..+++.. |. .+....| .-++..+.++++++|....+-. -+.....|.|.++.+.+.+.....+..... T Consensus 126 ~~~~~v~~----~~----~~~~~~~~~~~~~~~~~~eiih~~~~~~~~--~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~ 195 (403) T protein:vir:10 126 AALMQVEA----DA----NKFIKKFIFNNQINYRVDEIIFIKDNSYVC--GTNSQISGQSRVATVIDSLEKRSKMLNFKE 195 (403) T ss_pred CcceEEEE----cC----CceEEEEEecCceeecccceEEeccccccc--CCCCCcccccHHHHHHHHHHHHHHHHHHHH Confidence 11111110 00 0111111 1123455677888887543211 123456799999999999999888887777 Q ss_pred HHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCce-eEEEEcCCceeEEEecccC----ChHHHHHHHHHH Q lcl|Aclame:pro 316 DIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRN-ILFLDKATEEFFQFNTPLS----GLDALQAQAQEQ 388 (695) Q Consensus 316 ~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~-~~~ld~~~e~~~~~~~~ls----gl~~~~~~~~~~ 388 (695) .++..... .+++++ ..++.+.-+.+.++++.......|.| .++++ ++-+|+.++.+.+ .+-+........ T Consensus 196 ~~f~ng~~~~gil~~~--~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~~~~~~~~~d~q~~e~~~~~~~~ 272 (403) T protein:vir:10 196 KFLDNGTVIGLILETD--EILNKKLRERKQEELQLDYNPSTGQSSVLILD-GGMKAKPYSQISSFKDLDFKEDIEGFNKS 272 (403) T ss_pred HHHhccCCcceEEEeC--CCCCHHHHHHHHHHHHHHhCCcccCcceeecC-CCceeEEecccCCHHHHHHHHHHHHHHHH Confidence 76644332 345554 44555555666666665544445555 45565 4668888875433 235556667788 Q ss_pred HHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhH Q lcl|Aclame:pro 389 MSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLE 468 (695) Q Consensus 389 iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e 468 (695) ||.+-+||..+| |. |-+++-|.....||.. -|.|.+..+-+-+-+ ++| ..+.|.++.+.-+.... T Consensus 273 Ia~~fgVPp~~l-g~---~~~sn~e~~~~~f~~~-------tl~P~~~~ie~~l~~-~L~---~~~~~d~~~~~~l~~D~ 337 (403) T protein:vir:10 273 ICLAFGVPQVLL-DG---GNNANIRPNIELFYYM-------TIIPMLNKLTSSLTF-FFG---YKITPNTKEVAALTPDK 337 (403) T ss_pred HHHHhCCCHHHc-CC---CCCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHH-hcC---ceeeeccchhhhcccCH Confidence 999999999776 63 2334445555666643 377888777665544 232 34556665543332211 Q ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCC Q lcl|Aclame:pro 469 VAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARA 548 (695) Q Consensus 469 ~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (695) +..+++..++++.|+++++|+|..+...+..... ............... ...+.... .. T Consensus 338 -----~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~~---~d~~~~p~n~~~~~~------~~~~~e~~-------~~ 396 (403) T protein:vir:10 338 -----EAEAKHLTSLVNNGIITGNEARSELNLEPLDDEQ---MNKIRIPANVAGSAT------GVSGQEGG-------RP 396 (403) T ss_pred -----HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCccc---ccccccccccccccc------cCCCCcCC-------CC Confidence 1335677788999999999999988655432100 000000000000000 00000000 00 Q ss_pred Cccchhh Q lcl|Aclame:pro 549 GATAPPT 555 (695) Q Consensus 549 ~~~~~~~ 555 (695) ....... T Consensus 397 ~~~~~g~ 403 (403) T protein:vir:10 397 KGSTEGD 403 (403) T ss_pred CCCcCCC Confidence 0000000 No 85 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=99.20 E-value=3.4e-11 Score=77.98 Aligned_cols=368 Identities=13% Similarity=0.001 Sum_probs=182.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCch-HHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGF-PTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy-~~~a~~~~~~~ 124 (695) |.-..+....+..+. .... ..... .+. .+...|- -....+.+++. T Consensus 1 Mg~f~~~~~~~~~~~-----------------~~~~-~~~~~---------------~~~-~~~~~~~~v~~~~~l~~~~ 46 (382) T protein:vir:48 1 MPIFNLATESPPDNQ-----------------GGFF-DVVDS---------------DFL-ASLKGNEWVSAETALRNSD 46 (382) T ss_pred CccccccccCCcccc-----------------cccc-cchhh---------------hcc-ccccCCcccchHhhhccHH Confidence 333222111100000 0000 00000 000 0000010 01123446788 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~ 203 (695) +.++|+++|+++-.-=+++.... .+.|...=..+--+..|.+.+.+. -++|-++++ T Consensus 47 v~~~i~~ia~~ia~~~~~~~~~~-----------------------~~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~ 103 (382) T protein:vir:48 47 LFSIINQLSNDLATVKLITSRKK-----------------------LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAY 103 (382) T ss_pred HHHHHHHHHHhhccCceeeecch-----------------------hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEE Confidence 99999999988765544432211 112222223333445555555544 457878877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c------eEEchhhEEE Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G------TEVHATRLHT 275 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~------~~iH~SRli~ 275 (695) +.-+. .|.+.+|.++++.++++.... .+...+|+|. + +.+.++.||| T Consensus 104 i~rd~-----------------~G~~~~l~~i~~~~v~v~~~~--------~~~~~~y~~~~~~~~~~~~~~~~~~evih 158 (382) T protein:vir:48 104 RWRNE-----------------NGRDMKWEYLRPSQVSFNRLD--------NKDGIYYNITFDDPRIPPKQHVPQNDVLH 158 (382) T ss_pred EEECC-----------------CCcEEEEEEEcCceeEEEEcC--------CCCeEEEEEEecCccccceeEEcCccEEE Confidence 65321 234668889999888764321 2233456553 1 3578899999 Q ss_pred ecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 276 IVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYR 353 (695) Q Consensus 276 ~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~ 353 (695) |..... .....|.|.++.+.+.|.....+......++...... +++++ ..+..+....+.+.. ..... T Consensus 159 ~~~~~~------~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~--~~~~~e~~~~~~~~~--~~~~~ 228 (382) T protein:vir:48 159 FRLLSV------DGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIK--GGGLLDFKTKLSRSR--QAMKQ 228 (382) T ss_pred ecCCCC------CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeC--CCCChHHHHHHHHHH--Hhhcc Confidence 975432 2345799999999999988888888888877765543 44554 333333333332222 22334 Q ss_pred CCceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 354 DNRNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNAL 431 (695) Q Consensus 354 ~n~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l 431 (695) +..++++++. +.+|+.++.+... +-+......+.||.+.+||-.+| |.+..+ ++.+...+.||. ..| T Consensus 229 n~g~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~l-g~~~~~--~~~~~~~~~~~~-------~~l 297 (382) T protein:vir:48 229 MQGGPLVLDD-LEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVV-GGQGDQ--QSSLEMSSDLYS-------KAV 297 (382) T ss_pred CCCCeeEcCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCc--ccHHHHHHHHHH-------HHH Confidence 4455577774 6789999866553 44666777899999999997777 543222 222323445543 446 Q ss_pred hHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 432 QQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 432 ~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) .|.+..+-+-+-+..+.....++.. ...++... .......++..|.++..++++.+....... ..... T Consensus 298 ~p~~~~i~~~l~~~l~~~~~~~~~~----~~~~~~~~-------~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~-~~~~~ 365 (382) T protein:vir:48 298 SRYLRPFLSELSQKLSCDVDADIFP----AVDPTGSN-------YISRINSLVKTGTLAQNQGLYILQQAEILP-KELPN 365 (382) T ss_pred HHHHHHHHHHHHHHhcChhhhhhhh----hhccchhH-------HHHHHHHHhhcCccCHHHHHHHHhhCCCCC-cchhh Confidence 7777666655544333221111111 11111111 112334567778888888887664322111 00000 Q ss_pred hhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 512 ANDDPGVPADDDIDGVL 528 (695) Q Consensus 512 ~~~~~~~~~~~~~~~~~ 528 (695) .+............... T Consensus 366 ~~~~~~~~~GGd~~~~~ 382 (382) T protein:vir:48 366 GENPNSTLKGGEEDGQD 382 (382) T ss_pred hhcCCCCCCCCCCCCCC Confidence 00000000000000000 No 86 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=99.19 E-value=5.4e-11 Score=76.87 Aligned_cols=419 Identities=12% Similarity=0.074 Sum_probs=195.2 Q ss_pred hhhcccc-cccccccccccchhhh---hhhcccccCCCCcccccccccccccccccchhhh-hhhccCCCCchHHHHHHH Q lcl|Aclame:pro 46 MGRRGAL-NALDAAPVAEPSPSLR---LARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGFPTLVLLA 120 (695) Q Consensus 46 ~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~gy~~~a~~~ 120 (695) |-=-+.- ...+.+..-.+...+. .|..++.+ +..+.....+.-...+ +|. +.+..+|..-..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al- 68 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKR----------DLQYNEDDLQMMVQTLPGFQ-GTKLRQYKDIEAI- 68 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccc----------cccCCCcchHHHHHHhhccc-ccCccccchhhhh- Confidence 3222220 0122222222222221 12212221 1111100000000000 111 1112223333333 Q ss_pred hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccce Q lcl|Aclame:pro 121 QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGR 199 (695) Q Consensus 121 ~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~ 199 (695) +++-+.++|+++|+++-.-=+++... | ....+......|..+=..+--...|.+++.+ .-++|- T Consensus 69 ~~~~V~acv~~Ia~~iA~lpl~~~~~--------~-------~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gn 133 (441) T protein:vir:98 69 RHSDIFTAVMMIASDLARMPIRVTVN--------G-------QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSH 133 (441) T ss_pred ccHHHHHHHHHHHHhhccCceEEecC--------C-------cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCC Confidence 34556778899988875543333211 0 0001111222222222222223344444443 456888 Q ss_pred EEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE--cc------eEEchh Q lcl|Aclame:pro 200 AHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--IG------TEVHAT 271 (695) Q Consensus 200 ~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i--~~------~~iH~S 271 (695) ++++|.-+. .|...+|.++++..|++... . -|++.++.. .+ +.+.++ T Consensus 134 ay~~i~r~~-----------------~G~~~~L~~i~~~~v~v~~~----~----~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (441) T protein:vir:98 134 GYIEITRDK-----------------TGEPMNLTFRKTSEIELKLD----A----RGRLYYFHQRIDSNGNNIERNVKFE 188 (441) T ss_pred eEEEEEEcC-----------------CCcEEEEEEEcCceeEEEEC----C----CCcEEEEEEEeccCcceeeEEEccc Confidence 887765321 23466788999888876321 1 234433322 11 457888 Q ss_pred hEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchH-HHHHHHHHHH Q lcl|Aclame:pro 272 RLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGA-NVDLSMRAEL 348 (695) Q Consensus 272 Rli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~-~~~l~~r~~~ 348 (695) .||||...++ ..+.|.|.++.+.+.|.....+......++..... .+++++ ..+.++. .+.+.++++. T Consensus 189 dviHir~~~~-------dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~--~~~~~~e~~~~~~~~~~~ 259 (441) T protein:vir:98 189 DMLDIKFYSL-------DGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK--GVLDNKKARDRAREEFHK 259 (441) T ss_pred cEEEeccCCC-------CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeC--CCCCCHHHHHHHHHHHHH Confidence 8999876432 23569999999999998888888888877666443 444554 2333322 2334444444 Q ss_pred HHHhcCC-ceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHH Q lcl|Aclame:pro 349 INRYRDN-RNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRA 425 (695) Q Consensus 349 ~~~~~~n-~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~ 425 (695) ......| .++++++. +.+|+.++.+.. .+-+......++||.+.+||..+| |...++.+ -+ ....+| + T Consensus 260 ~~~G~~nag~~~vl~~-g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~l-g~~~~~~s--~~-q~~~~y--~-- 330 (441) T protein:vir:98 260 SFSGTKQAGKVVVLDE-SMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKF-GIETANMS--IT-DANLDY--L-- 330 (441) T ss_pred HhcCccccCcceecCC-CceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHc-CCCCCCcc--HH-HHHHHH--H-- Confidence 3333233 34577764 678998876543 344556667789999999999987 65544432 12 222222 1 Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCCCc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhh Q lcl|Aclame:pro 426 YQRNALQQLMNDVIVMIQLSLFGAVDPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPD 503 (695) Q Consensus 426 ~Qe~~l~p~l~~l~~~l~~s~~g~~~~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~ 503 (695) .-|.|.+..+-+-+-+..+ ....+ +.|....|...+.+++ +++...++..|+++++|+|+.+...+. T Consensus 331 ---~tl~P~~~~ie~~ln~~L~-~~~~~~~~~fd~~~llr~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~gl~pi 399 (441) T protein:vir:98 331 ---STLKPYITCVCAELNFKFN-DEYVNREFKFDTTEIRVVDEKTQ-------AEIDKINIDSGKMNIDEIRQRDGLAPI 399 (441) T ss_pred ---HHHHHHHHHHHHHHHhhcc-ccccCceEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 1367777776665544332 21223 4444455566666555 556677888999999999988765544 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 504 GPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) .+............... .......... ....... ........ T Consensus 400 ~gGd~~~~~~~~n~~~~--~~~~~~q~~~-----~~~~~~~-~kgGe~ne 441 (441) T protein:vir:98 400 PGGNGSIHRVDLNHVNI--ELVDEYQMNK-----SRATDKK-LKGGEENE 441 (441) T ss_pred CCCCcceEeeccccccc--cccccccccc-----ccccccc-cCCCCCCC Confidence 33221100000000000 0000000000 0000000 00000000 No 87 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=99.14 E-value=1.4e-10 Score=74.56 Aligned_cols=379 Identities=12% Similarity=0.017 Sum_probs=187.0 Q ss_pred cchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhCh Q lcl|Aclame:pro 44 ADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLP 123 (695) Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~ 123 (695) =-|+..+.+.....++.... +. +...........+++.+.+...+. .....+++ T Consensus 1 m~m~~~~~~~~~~~~~~~~~---------~~----------------~~~~~~~~~~~~~~~~~~~g~~v~-~~~al~~~ 54 (392) T protein:vir:74 1 MILPILNFINQTNDPPEAGS---------VQ----------------SYFPDGNDAQIMESLLGDNNEWVS-ARAALRNS 54 (392) T ss_pred CcchhhhhhhcccCcccccc---------cc----------------cccccCchhhhhhhccCCCCcccc-hhhhhcch Confidence 11222222111110000000 00 000000000111111111111111 11223577 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHP 202 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i 202 (695) -+.++|+++|++.-.--+++.... .+.|...=...--+..|.+.+.+. -++|-+++ T Consensus 55 ~v~~~v~~ia~~ia~lp~~~~~~~-----------------------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~ 111 (392) T protein:vir:74 55 DLFSIILQLSSDLAIVKINAEKKK-----------------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFA 111 (392) T ss_pred HHHHHHHHHHHhhccCceeeccch-----------------------hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEE Confidence 889999999988754333321110 111222222222344555555544 56788887 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc--------eEEchhhEE Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG--------TEVHATRLH 274 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~--------~~iH~SRli 274 (695) ++.-+. .|.+.+|.++++..|++.... ++...+|+++. ..++++.|| T Consensus 112 ~i~r~~-----------------~G~~~~L~~i~~~~v~v~~~~--------~~~~~~y~~~~~~~~~~~~~~~~~~evi 166 (392) T protein:vir:74 112 YRWRNA-----------------NGADMKWEYLRPSQVNTYYFE--------YENGMYYNITFDDPKIEPILQAPQSDLI 166 (392) T ss_pred EEEECC-----------------CCcEEEEEEEcCceeEEEEcC--------CCceEEEEEEecCCccceeEEEcCccEE Confidence 765321 244678899998888754221 12223455431 357889999 Q ss_pred EecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHh Q lcl|Aclame:pro 275 TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRY 352 (695) Q Consensus 275 ~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~ 352 (695) ||....+ ...+.|.|.++.+.+.|.....+......++..... .+++++....... +...+..+.+... T Consensus 167 h~~~~~~------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~---~~~~~~~~~~~~~ 237 (392) T protein:vir:74 167 HMKLLSI------DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD---KDKASRSRSFMKR 237 (392) T ss_pred EecCCCC------CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchH---HHHHHHHHHHhcc Confidence 9976543 123569999999999998888888877777666443 3455543222111 1222223333333 Q ss_pred cCCceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 353 RDNRNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNA 430 (695) Q Consensus 353 ~~n~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~ 430 (695) .+..+..+++. +.+|++++.+.. .+-+......++||.+-+||-.+| |... .- .+..+..+.||. .. T Consensus 238 ~n~g~~~vl~~-g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l-g~~~-~~-~~~~e~~~~~~~-------~~ 306 (392) T protein:vir:74 238 SRSGGPVVLDD-LEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQG-DQ-QSSIQQISGMYA-------SA 306 (392) T ss_pred ccCCCeeecCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCC-Cc-ccHHHHHHHHHH-------HH Confidence 33445677774 678999986533 455666777889999999998776 5332 11 122223444433 34 Q ss_pred hhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 431 LQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 431 l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) |.|.+..+-+-+-+..+ .++.+....+...+.+++ ++....++..|+++..++++.+....... + T Consensus 307 l~p~~~~ie~~l~~~l~----~~~~~~~~~~~~~d~~~~-------~~~~~~l~~~g~~t~near~~~~~~g~~p----n 371 (392) T protein:vir:74 307 LNRYLRPAISELEYKLS----DHISVNMRPAIDPLGDNY-------LSTISTATRWGALAENQATFVLQEAGYIP----K 371 (392) T ss_pred HHHHHHHHHHHHHHhcc----chhcccchhhhcCCHHHH-------HHHHHHHHhCCCcCHHHHHHHHHhCCCCc----c Confidence 77777776665544322 345555555555555444 44566778889999999988764322110 0 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhccccc Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDTGA 542 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (695) .....+ ...... -+......+ T Consensus 372 e~r~~e----nl~~~~-------~Gd~~~p~p 392 (392) T protein:vir:74 372 DLPAPE----NTNKKT-------TGQSNEPVP 392 (392) T ss_pred ccchhc----CCCCCC-------CCCCCCCCC Confidence 000000 000000 000000000 No 88 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=99.13 E-value=1.9e-10 Score=73.88 Aligned_cols=379 Identities=11% Similarity=0.028 Sum_probs=187.6 Q ss_pred cchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhCh Q lcl|Aclame:pro 44 ADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLP 123 (695) Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~ 123 (695) -.|.-.+.+.....++. ......+ ... ........+..+.+...+.. ....+++ T Consensus 1 m~m~~f~~~~~~~~~~~------~~~~~~~---~~~----------------~~~~~~~~~~~~~~~~~v~~-~~al~~~ 54 (392) T protein:vir:39 1 MILPILNFINQTNDPPE------VGSVQSY---FPD----------------GNDAQIMESLLGDNNEWVSA-RAALRNS 54 (392) T ss_pred Ccchhhhhhhccccccc------ccccccc---ccc----------------CchhhhhhhhcCCCCceech-HHhhccH Confidence 22332222111110000 0000000 000 00000011111111111111 1122567 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHP 202 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i 202 (695) .+.++|++.|++.-.-=+++.... .+.|...=...--...|.+.+. ..-++|-+++ T Consensus 55 ~v~~~i~~ia~~ia~lp~~~~~~~-----------------------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~ 111 (392) T protein:vir:39 55 DLFSIILQLSSDLAIVKINAEKKK-----------------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFA 111 (392) T ss_pred HHHHHHHHHHHhhccCceeeccch-----------------------hhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEE Confidence 888899999988654333332111 0111111112223344555555 3456788887 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc--------eEEchhhEE Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG--------TEVHATRLH 274 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~--------~~iH~SRli 274 (695) ++.-+. .|.+.+|.++++..|++.... .+...+|+++. ..++++.|| T Consensus 112 ~i~r~~-----------------~g~~~~L~~l~~~~v~~~~~~--------~~~~~~y~~~~~~~~~~~~~~~~~~eii 166 (392) T protein:vir:39 112 YRWRNA-----------------NGADMKWEYLRPSQVNTYYFE--------YENGMYYNITFDDPKIEPILQAPQSDLI 166 (392) T ss_pred EEEECC-----------------CCcEEEEEEEcCceeEEEEcC--------CCceEEEEEEecCcccceeEEEccccEE Confidence 765321 244678889998888654221 22334555531 358899999 Q ss_pred EecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHh Q lcl|Aclame:pro 275 TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRY 352 (695) Q Consensus 275 ~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~ 352 (695) |+..... ...+.|.|.++.+.+.+.....+.......+..... .+++++...... ++...+..+.+... T Consensus 167 h~~~~~~------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~---~~~~~~~~~~~~~~ 237 (392) T protein:vir:39 167 HMKLLSI------DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS---DKDKASRSRSFMKR 237 (392) T ss_pred EecCCCC------CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch---HHHHHHHHHHHhcc Confidence 9986542 223579999999999998888888877777766443 345554322221 11222222333333 Q ss_pred cCCceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 353 RDNRNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNA 430 (695) Q Consensus 353 ~~n~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~ 430 (695) .+..++++++. +.+|++++.+.. .+-+......++||.+-|||-.+| |.+... .+.++..+.||. .- T Consensus 238 ~~~g~~~vl~~-g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l-g~~~~~--~~~~~~~~~f~~-------~~ 306 (392) T protein:vir:39 238 SRSGGPVVLDD-LEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQ--QSSIQQISGMYA-------SA 306 (392) T ss_pred ccCCCeeecCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCc--ccHHHHHHHHHH-------HH Confidence 44455677774 678999986543 455666777889999999998777 533211 122334445544 33 Q ss_pred hhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 431 LQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 431 l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) |.|.+..+-+-+-+..+ .++.+....+...+..++ ++....++..|.++..|+++.+....... + T Consensus 307 l~P~~~~ie~~l~~~L~----~~~~~d~~~~~~~d~~~~-------~~~~~~l~~~g~~t~nE~r~~l~~~g~~p----~ 371 (392) T protein:vir:39 307 LNRYLRPAISELEYKLS----DHISVNMRPAIDPLGDNY-------LSTISTATRWGALAENQATFVLQEAGYIP----K 371 (392) T ss_pred HHHHHHHHHHHHHHhcc----ccccccchhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHHHhcCCCc----c Confidence 67777776665544322 344555555555554443 45566778889999999987664332111 0 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhccccc Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDTGA 542 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (695) ..... ...... ..+......+ T Consensus 372 e~r~~----e~l~~~-------~~Gd~~~p~p 392 (392) T protein:vir:39 372 DLPAP----ENTNKK-------TTGQSNEPVP 392 (392) T ss_pred ccchh----cCCCCC-------CCCCCCCCCC Confidence 00000 000000 0000000000 No 89 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=99.13 E-value=1.9e-10 Score=73.88 Aligned_cols=379 Identities=11% Similarity=0.028 Sum_probs=187.6 Q ss_pred cchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhCh Q lcl|Aclame:pro 44 ADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLP 123 (695) Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~ 123 (695) -.|.-.+.+.....++. ......+ ... ........+..+.+...+.. ....+++ T Consensus 1 m~m~~f~~~~~~~~~~~------~~~~~~~---~~~----------------~~~~~~~~~~~~~~~~~v~~-~~al~~~ 54 (392) T protein:vir:10 1 MILPILNFINQTNDPPE------VGSVQSY---FPD----------------GNDAQIMESLLGDNNEWVSA-RAALRNS 54 (392) T ss_pred Ccchhhhhhhccccccc------ccccccc---ccc----------------CchhhhhhhhcCCCCceech-HHhhccH Confidence 22332222111110000 0000000 000 00000011111111111111 1122567 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHP 202 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i 202 (695) .+.++|++.|++.-.-=+++.... .+.|...=...--...|.+.+. ..-++|-+++ T Consensus 55 ~v~~~i~~ia~~ia~lp~~~~~~~-----------------------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~ 111 (392) T protein:vir:10 55 DLFSIILQLSSDLAIVKINAEKKK-----------------------NQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFA 111 (392) T ss_pred HHHHHHHHHHHhhccCceeeccch-----------------------hhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEE Confidence 888899999988654333332111 0111111112223344555555 3456788887 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc--------eEEchhhEE Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG--------TEVHATRLH 274 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~--------~~iH~SRli 274 (695) ++.-+. .|.+.+|.++++..|++.... .+...+|+++. ..++++.|| T Consensus 112 ~i~r~~-----------------~g~~~~L~~l~~~~v~~~~~~--------~~~~~~y~~~~~~~~~~~~~~~~~~eii 166 (392) T protein:vir:10 112 YRWRNA-----------------NGADMKWEYLRPSQVNTYYFE--------YENGMYYNITFDDPKIEPILQAPQSDLI 166 (392) T ss_pred EEEECC-----------------CCcEEEEEEEcCceeEEEEcC--------CCceEEEEEEecCcccceeEEEccccEE Confidence 765321 244678889998888654221 22334555531 358899999 Q ss_pred EecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHh Q lcl|Aclame:pro 275 TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRY 352 (695) Q Consensus 275 ~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~ 352 (695) |+..... ...+.|.|.++.+.+.+.....+.......+..... .+++++...... ++...+..+.+... T Consensus 167 h~~~~~~------~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~---~~~~~~~~~~~~~~ 237 (392) T protein:vir:10 167 HMKLLSI------DGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS---DKDKASRSRSFMKR 237 (392) T ss_pred EecCCCC------CCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch---HHHHHHHHHHHhcc Confidence 9986542 223579999999999998888888877777766443 345554322221 11222222333333 Q ss_pred cCCceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 353 RDNRNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNA 430 (695) Q Consensus 353 ~~n~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~ 430 (695) .+..++++++. +.+|++++.+.. .+-+......++||.+-|||-.+| |.+... .+.++..+.||. .- T Consensus 238 ~~~g~~~vl~~-g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l-g~~~~~--~~~~~~~~~f~~-------~~ 306 (392) T protein:vir:10 238 SRSGGPVVLDD-LEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYI-GGQGDQ--QSSIQQISGMYA-------SA 306 (392) T ss_pred ccCCCeeecCC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCc--ccHHHHHHHHHH-------HH Confidence 44455677774 678999986543 455666777889999999998777 533211 122334445544 33 Q ss_pred hhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 431 LQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 431 l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) |.|.+..+-+-+-+..+ .++.+....+...+..++ ++....++..|.++..|+++.+....... + T Consensus 307 l~P~~~~ie~~l~~~L~----~~~~~d~~~~~~~d~~~~-------~~~~~~l~~~g~~t~nE~r~~l~~~g~~p----~ 371 (392) T protein:vir:10 307 LNRYLRPAISELEYKLS----DHISVNMRPAIDPLGDNY-------LSTISTATRWGALAENQATFVLQEAGYIP----K 371 (392) T ss_pred HHHHHHHHHHHHHHhcc----ccccccchhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHHHhcCCCc----c Confidence 67777776665544322 344555555555554443 45566778889999999987664332111 0 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhccccc Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDTGA 542 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (695) ..... ...... ..+......+ T Consensus 372 e~r~~----e~l~~~-------~~Gd~~~p~p 392 (392) T protein:vir:10 372 DLPAP----ENTNKK-------TTGQSNEPVP 392 (392) T ss_pred ccchh----cCCCCC-------CCCCCCCCCC Confidence 00000 000000 0000000000 No 90 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=99.13 E-value=5e-10 Score=71.59 Aligned_cols=488 Identities=15% Similarity=0.095 Sum_probs=195.3 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHH-HHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTL-VLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~-a~~~~~~~ 124 (695) |+-. .|+.. +..++.+............. +..+ +|+ ... +.+..| .++..++. T Consensus 1 ~~~~-~~~i~-------------s~~~~~~i~~~~~~s~~~~~------~~~~----~~~-~pp-~~~~~la~l~~~n~~ 54 (542) T protein:vir:41 1 MFNY-HLSIR-------------SLEKYKAIKREEVESQALGE------TRFE----EYV-EPK-VNPLVLLSLLQVNPY 54 (542) T ss_pred Cccc-ccccc-------------ccccchhhhhcccccccccc------ccCC----ccc-cCC-CCHHHHHHHHhhcHH Confidence 2221 11111 11111111100000000000 0000 111 111 123334 44567899 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHH--hhchHHHHHHHHHhcCccceEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIE--RLRIRDAVRTTVIHDQAFGRAHP 202 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~l~~~~~~~~a~~~~Rl~G~~~i 202 (695) ++.+|++.+++..+..+++..... +.+...+. .....+-+...+..-.++|-+++ T Consensus 55 v~scI~~ia~~IA~l~~~~~~~~~-----------------------~~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi 111 (542) T protein:vir:41 55 HASACSIKANDIIRTGYILEGDDE-----------------------GVVDEFIRACKPSFEYVLLRALEDLQVFNYCTL 111 (542) T ss_pred HHHHHHHHHHHHhhCceeeecccc-----------------------hhhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEE Confidence 999999999999988776531110 11111111 11223334444445567899888 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee-----cccccccccCCceeE--EE---c---ceEEc Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN-----SINPVADDFYKPSTW--WM---I---GTEVH 269 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~-----~~dp~s~~yg~P~~y--~i---~---~~~iH 269 (695) ++.-+. .|.+.+|.++++..+++.... ..+.....|.++-.| .+ . +..+. T Consensus 112 ~i~rd~-----------------~G~~~~L~~l~~~~v~v~~d~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~ 174 (542) T protein:vir:41 112 EVVRDD-----------------RGDPIRFEYIPSHTIRVHKDGSRYRQTWDGVNITHFKDYRYEGEINPETGEDQDSVG 174 (542) T ss_pred EEEEcC-----------------CCcEEEEEEEcCcceEEEEcCCeeEeeecCCcceeEEeecccccccccccccccccC Confidence 766432 234567788888777653210 011111111111110 01 1 12355 Q ss_pred hhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechH--------HhhcchHH Q lcl|Aclame:pro 270 ATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLA--------QALMPGAN 339 (695) Q Consensus 270 ~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~--------~~l~~~~~ 339 (695) ++-||||.... +...+.|.|.++.+...|.....+......++..... .+++++.. ..++.+.. T Consensus 175 ~~eIiHir~~~------~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~~~~~~~~~e~~ 248 (542) T protein:vir:41 175 ANELVFIHIPS------PVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDELEEDPDGNPTGR 248 (542) T ss_pred cccEEEecCCC------CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCccccccccccccCHHHH Confidence 66788876543 2234689999999998887776666666665544332 24555321 12333344 Q ss_pred HHHHHHHHH-HHHhcCCceeEE-EEc---CCc--eeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccc-cc Q lcl|Aclame:pro 340 VDLSMRAEL-INRYRDNRNILF-LDK---ATE--EFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTG-LN 409 (695) Q Consensus 340 ~~l~~r~~~-~~~~~~n~~~~~-ld~---~~e--~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~G-ln 409 (695) +.+.+.++. +....+|.|..+ +.. .++ +|..++.+.. .+-+......++||++.+||..+| |...++ +| T Consensus 249 ~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~l-G~~~~~t~n 327 (542) T protein:vir:41 249 TVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRL-GIADTGPLG 327 (542) T ss_pred HHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CcCCCcccc Confidence 445555533 333455665444 321 123 4555544322 334445566788999999998876 765433 44 Q ss_pred -CcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhc Q lcl|Aclame:pro 410 -ASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQV 488 (695) Q Consensus 410 -atge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~ 488 (695) ++.|....+||+.+ |.|.+..+-..+-...+-....++.|+|+...-+... + ......++..|+ T Consensus 328 ~sn~Eq~~~~f~~~t-------L~P~~~~ie~~ln~~L~~~~~~~~~~~f~~~~ll~~d-~-------~~~~~~~v~~Gi 392 (542) T protein:vir:41 328 GNFAEVTRRTYYESV-------VRPQQNIISSILTDFFQVKFNPKTRFKFNDETLLESD-S-------VRNCALLVQSGV 392 (542) T ss_pred cccHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcccccCCceEEEecchhhcchH-H-------HHHHHHHHhCCC Confidence 33455566665544 6777777666554322222223577788754443321 1 123445788999 Q ss_pred chhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh----hhh---hhhhhhhcccccccccCCCccchhhhhhhhh Q lcl|Aclame:pro 489 IRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV----LTY---VQRLAEGGDTGAPGGARAGATAPPTVANVNA 561 (695) Q Consensus 489 i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (695) ++++|+|+.+...+. .... ... ........... ... ...........+. ............. T Consensus 393 lT~NE~Re~L~g~~p--gdd~---~l~-p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~----~~~~~~~~~~~~~- 461 (542) T protein:vir:41 393 LTPAEARERLFGLDG--GPDI---FMV-PSKGAAKSVKRQERNYEKNQIREIRKIYAKYRPR----FNEIISSKLSAEE- 461 (542) T ss_pred CCHHHHHHhhCCCCC--CCcc---ccc-cccccccccccCCcCCCCCchhhhhhcccccCcc----ccccccccccchh- Confidence 999999865422111 1000 000 00000000000 000 0000000000000 0000000000000 Q ss_pred ccccccccccCceEEEEEEEEEcCCeEEEEEeCC--------CceeCCccee--CCCCCHHHHHHHHHHHhcCceEeEEE Q lcl|Aclame:pro 562 NVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPA--------GDWGLPAGKV--EGNETPEEAARRETREETGYDHDGEL 631 (695) Q Consensus 562 ~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~--------g~W~lPGG~v--E~gEs~~~aa~REv~EEtGl~v~~~~ 631 (695) .... ...+-....+- -...+.+.|++--.- |.=.+|.--+ |.-|.+.+|-+..+ .| .+ .. T Consensus 462 --~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~--~~ 531 (542) T protein:vir:41 462 --KKKK-IDESLAEFRAE-AYEAGKKMLIIGGDMGSMSALNQGVSVIPSKPLNLERYEELLEASVEDM---IG-RI--RH 531 (542) T ss_pred --hccc-ccchhhhhHHh-HHhcCceEEEeecCchhhhhhhccceeccCCCcChHHHHHHHHhhHHHH---HH-HH--HH Confidence 0000 00000000000 000112333332211 1122222211 11222222222111 01 00 01 Q ss_pred EecCcccEEEE Q lcl|Aclame:pro 632 VPLGKFDGFFH 642 (695) Q Consensus 632 ~~~~~~~~~~~ 642 (695) |++..+.|... T Consensus 532 ~~~~~~~~~~~ 542 (542) T protein:vir:41 532 YLYKVIGWREL 542 (542) T ss_pred HHHHHhhhccC Confidence 11111111000 No 91 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=99.10 E-value=3.9e-10 Score=72.19 Aligned_cols=384 Identities=12% Similarity=0.058 Sum_probs=185.7 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchH-HHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~-~~a~~~~~~~ 124 (695) |.=...+.... .....+. . .....+ + ...+..|-. ......+++. T Consensus 1 MGl~~~~~~~~-~~~~~~~------------------~-~~~~~~------------~--~~~~~~~~~vt~~~al~~~~ 46 (394) T protein:vir:62 1 MGLRDRFSNYL-FKKAEKR------------------G-YLDNVL------------G--KSIRYSGVYVTDSNILQSSD 46 (394) T ss_pred Cchhhhhhhhc-cCCCCch------------------h-hhhhhh------------h--cccccCccccChhhhhccHH Confidence 33222211100 0000000 0 000000 0 000111100 1122335678 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~ 203 (695) ++++|+++|+++-.--+++..... ...+.+..-.|...=...-....|.+.+.+. -++|-++++ T Consensus 47 v~~~i~~Ia~~iA~lp~~v~~~~g---------------~~~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~ 111 (394) T protein:vir:62 47 VYELLQDISNQMVLADIVVEDEFG---------------NEIKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPI 111 (394) T ss_pred HHHHHHHHHHhhcccceEEEcCCC---------------cccchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEE Confidence 999999999998766555532210 0111111111211112222333455544444 457888877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchh Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGD 283 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~ 283 (695) +. ++...+ | ..+ .|. . |. +.+ .+|.+.++.+.++.|||+.+..+ T Consensus 112 i~--~~~~~~--~-------------~~~--------~~~---~-~~---~~~--~~~~~~~~~~~~~eiih~r~~~~-- 155 (394) T protein:vir:62 112 LN--GAQIHL--A-------------SNV--------FTE---L-DD---NLV--EHFNIGGHEIPPCMIRHVKNIGA-- 155 (394) T ss_pred Ee--cceeec--c-------------ccc--------eEE---E-CC---ceE--EEEeeCCEEechhheEEecCcCC-- Confidence 52 322111 0 001 110 0 11 111 25667788999999999876432 Q ss_pred hhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcCCce-eEE Q lcl|Aclame:pro 284 MLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRDNRN-ILF 360 (695) Q Consensus 284 ~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~-~~~ 360 (695) ..+.|.|.++.+.+.|.....+......++...... +++++..........+.+.+.++......+|.| +.+ T Consensus 156 -----d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~v 230 (394) T protein:vir:62 156 -----DHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAILDQLESIDEARSVKM 230 (394) T ss_pred -----CCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHHHHHhccccccCceeE Confidence 235799999999999999998888888877765443 444442211112222334444433322334444 455 Q ss_pred EEcCCceeEEE--ecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHH Q lcl|Aclame:pro 361 LDKATEEFFQF--NTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMN 436 (695) Q Consensus 361 ld~~~e~~~~~--~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~ 436 (695) +.. +.+++.. +.+.. .+-+.......+||.+.+||-.+|-+ . -++..|.-.++||.. -|.|.+. T Consensus 231 l~~-g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-~---~~sn~e~~~~~~~~~-------~l~P~~~ 298 (394) T protein:vir:62 231 IPL-GKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTE-L---IKEDIEKAMMYIHNK-------AVRPIMK 298 (394) T ss_pred eeC-CCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCC-C---CCcCHHHHHHHHHHH-------HHHHHHH Confidence 653 5656644 43332 34445567788999999999998843 2 123345445566544 3788888 Q ss_pred HHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 437 DVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDD 515 (695) Q Consensus 437 ~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~ 515 (695) .+-+.+-+..++.- ...+.|+|+...-++..+++ +++.+++..|+++++|+|..+...+..+.... ... T Consensus 299 ~ie~~l~~kll~~~~~~~~~~~fd~~~~~~~~~~~-------~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~gd---~~~ 368 (394) T protein:vir:62 299 NFEDHLSLLFYAQNSGKRIKFKINILDFVTYSNKT-------NIGYNLVRTAITSPDNVADMLGFPKQNTKESQ---AIY 368 (394) T ss_pred HHHHHHhhhhcCccccCceEEEechhhhcCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCC---eee Confidence 87666655444322 23578889888777765543 45678889999999999998765543211110 000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchh Q lcl|Aclame:pro 516 PGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPP 554 (695) Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (695) ...................+.... .. T Consensus 369 ~~~n~~~~~~~~~~~~~~kgge~~-------------en 394 (394) T protein:vir:62 369 ISNDVTEIGKKEATDGSLGGGEEN-------------EN 394 (394) T ss_pred cccccccccccccccccCCCCCCC-------------CC Confidence 000000000000000000000000 00 No 92 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=99.10 E-value=2.1e-09 Score=68.11 Aligned_cols=455 Identities=15% Similarity=0.048 Sum_probs=197.9 Q ss_pred cccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccc Q lcl|Aclame:pro 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG 160 (695) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~ 160 (695) .....+++++.. .|. ...+.|... ..+.+++.+.++|++++++.-.--+++.... | T Consensus 1 ~~~~~~~~g~~~----------~~~-~~~~~~~~~-~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~-------~----- 56 (723) T protein:vir:94 1 MTTFPSGAGGWN----------AWS-ADSVFGNGA-KGWSNSAVAYRCISMLANNAASVDLVVRGPD-------G----- 56 (723) T ss_pred CcccccCCCccc----------ccc-ccccccccH-HHHhhhHHHHHHHHHHHHhhccceeEEEcCC-------C----- Confidence 000111111110 111 112222221 3356778888999999988754433332110 0 Q ss_pred cccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchh Q lcl|Aclame:pro 161 NAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYW 239 (695) Q Consensus 161 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~ 239 (695) ....+......|...=...--...|.+.+.+ --++|-+++++...+.+. .|....+.++.+.. T Consensus 57 --~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~--------------~g~p~~l~~l~~~~ 120 (723) T protein:vir:94 57 --ELDELHPLSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTP--------------AGVPDEIWYVYDRV 120 (723) T ss_pred --ccchhhHHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcc--------------ccceeEEEEecCcc Confidence 0000111112222111112223445555554 335788888876543221 12233455555544 Q ss_pred ccccceecccccccccCCceeEEE---cce--EEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHH Q lcl|Aclame:pro 240 VTPNNYNSINPVADDFYKPSTWWM---IGT--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSV 314 (695) Q Consensus 240 i~p~~~~~~dp~s~~yg~P~~y~i---~~~--~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~ 314 (695) +.+...+..+.... +....|.+ .|. .+..+.||||.... +...+.|.|.++.+.+.|.....+.... T Consensus 121 ~~v~~~~~~~~~~~--~~~~~y~~~~~~G~~~~~~~~dIiHir~~~------~~dg~~G~Spi~~a~~~i~~~~aa~~~~ 192 (723) T protein:vir:94 121 TTIVATRAADAVPQ--AQIIGYVIERTDGVRVPVLADEMLWLRFSD------PYDPLAVMAPWKAARAAVDADFYAATWQ 192 (723) T ss_pred eEEeecCCCcccee--eeeeEEEEEecCceeEEecccceEEecCCC------CCCCcccccHHHHHHHHHHHHHHHHHHH Confidence 43322221121111 11123333 343 57788999987542 2245679999999999988888777777 Q ss_pred HHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCcee-EEEEc---------CCceeEEEecccCC--hHH Q lcl|Aclame:pro 315 SDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRNI-LFLDK---------ATEEFFQFNTPLSG--LDA 380 (695) Q Consensus 315 ~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~-~~ld~---------~~e~~~~~~~~lsg--l~~ 380 (695) ..++..... .+++++ .++.+..+.+.++++..-..-.|-|- +++.+ .+-+|+.++.+..+ +-+ T Consensus 193 ~~~f~NG~~p~giL~~~---~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le 269 (723) T protein:vir:94 193 RQSFKNGARPGGVVNLG---DMDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYIN 269 (723) T ss_pred HHHHhcCCCcceEEEcC---CCCHHHHHHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHH Confidence 766654332 445544 24444444555555433222234443 33421 23467776655332 334 Q ss_pred HHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEecc Q lcl|Aclame:pro 381 LQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNA 460 (695) Q Consensus 381 ~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~p 460 (695) ......+.||.+.+||-..|.|.++ +++.+.-...||. .-|.|.++.+-+.+-+..+.....++.|+|+. T Consensus 270 ~r~~~~~eIa~afgVPp~~i~~~st---~sN~e~~~~~f~~-------~tL~P~~~~ie~~ln~~Ll~~~g~~~~~~f~~ 339 (723) T protein:vir:94 270 SRMHSAEEVMLAFGIRKDALLGGST---YENQAEAKAAVWT-------ETLIPQMEVMASITDLQLLPDIGWTVEWDFNS 339 (723) T ss_pred HHHHhHHHHHHHhCCChhHcCCCCC---cccHHHHHHHHHH-------HHHHHHHHHHHHHHhHhhcccccCceEEeecc Confidence 4556677899999999988876432 2333444555654 33788888877766655543333467788876 Q ss_pred c--cccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhc Q lcl|Aclame:pro 461 L--RELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGG 538 (695) Q Consensus 461 L--~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (695) . ...+.+++ ++....++..|+++++|+|..+...+..+... T Consensus 340 ~~lLr~D~~~r-------~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~------------------------------ 382 (723) T protein:vir:94 340 VPALQEDLEAQ-------AGRNQGYLVNDVLMVDEVRATIGLDPLPGGIG------------------------------ 382 (723) T ss_pred hhhhhcCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcc------------------------------ Confidence 3 44555444 45777788899999999998765544433110 Q ss_pred ccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcCCeEEEEEeCCCceeCCcceeCCCCCHHHHHHHH Q lcl|Aclame:pro 539 DTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVEGNETPEEAARRE 618 (695) Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~lPGG~vE~gEs~~~aa~RE 618 (695) .+.+.--.. .+ -|.- .+....++.+.|- T Consensus 383 ------------------------------------------------~~~~~p~~~-~~-a~~~--~~~p~~~e~~~~~ 410 (723) T protein:vir:94 383 ------------------------------------------------QMTLTPYRA-QF-APAP--APAPAVEEGAARM 410 (723) T ss_pred ------------------------------------------------cceeccccc-cc-cCCC--CCCccchhhhHhh Confidence 000000000 00 0000 0111222233332 Q ss_pred HHHhcCceEeEEEEecCc-ccEEEEEEEEEeeCCccccCchhhhhccCCHHHHhh-hcCcchH---HHHHHHHHHHHHhc Q lcl|Aclame:pro 619 TREETGYDHDGELVPLGK-FDGFFHAFVAHLEPFDVELNDEHTAFDWFNPDELPH-PLHRDTA---AIVDAACKALDRLE 693 (695) Q Consensus 619 v~EEtGl~v~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~-~l~~~~~---~~i~~~~~~l~~~~ 693 (695) +...--+.-. -+... ...... +.. .+....+++ -.|=.++.+-. .+..-.. .+.+.-+..+.+-+ T Consensus 411 ~~~~~~~~~~---~p~~~~~~~~~~-~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (723) T protein:vir:94 411 LALLERVAAD---RPLPELPVRATT-VLH--HDPGPDPQQ----TLYERLEALLQPLLVELGRRQAAVTLREFDLLMRGE 480 (723) T ss_pred hhhccccccc---cCcCCCCCCCCC-CCC--CCcccCCch----hHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhcch Confidence 2210000000 00000 000000 000 000111111 11111111110 0000000 00111111111111 Q ss_pred cC Q lcl|Aclame:pro 694 RA 695 (695) Q Consensus 694 ~~ 695 (695) +| T Consensus 481 ~~ 482 (723) T protein:vir:94 481 RA 482 (723) T ss_pred HH Confidence 11 No 93 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=99.08 E-value=1.7e-10 Score=74.11 Aligned_cols=268 Identities=12% Similarity=-0.000 Sum_probs=147.1 Q ss_pred HhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEEEEE Q lcl|Aclame:pro 128 MHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPYFKI 206 (695) Q Consensus 128 ~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~i~~ 206 (695) |-.+|- -.+|+ +...+.+....|...=....-+..|.+.+.+. -++|-+++++.- T Consensus 1 ia~l~~-~~~~~-----------------------~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r 56 (278) T protein:vir:78 1 MASLPL-KMYED-----------------------YKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER 56 (278) T ss_pred Ccccee-EEEec-----------------------CcccccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEE Confidence 111100 00010 01112222222222212222333455555444 456777766553 Q ss_pred cCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc---c--eEEchhhEEEecCCcc Q lcl|Aclame:pro 207 KGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---G--TEVHATRLHTIVSRPV 281 (695) Q Consensus 207 ~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---~--~~iH~SRli~~~~~~~ 281 (695) .. .|.+.+|.++++.+|++... +.+.+.+|++. | ..+..+.||+|.... T Consensus 57 ~~-----------------~G~~~~l~~l~~~~v~v~~~--------~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~- 110 (278) T protein:vir:78 57 DI-----------------YHQPSKLFLLNPDVVEMLIE--------NQSRELYYSIHAATGNKLIVHNMDMLHFKHIV- 110 (278) T ss_pred CC-----------------CCcEEEEEEECCceeEEEEc--------CCCceEEEEEEcCCceEEEEccccEEEECCCC- Confidence 21 24567889999988875322 12345566664 2 467889999986532 Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEE Q lcl|Aclame:pro 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFL 361 (695) Q Consensus 282 p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~l 361 (695) +...+.|.|.+..+...+.....+......-.....-.+++.+ ..++.+..+.+.++++. ...++.+++++ T Consensus 111 -----~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~--~~l~~e~~~~~~~~~~~--~~~~~g~~~vl 181 (278) T protein:vir:78 111 -----ASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYG--SNVGKEKRQQVLEDFKQ--YYEENGGILFQ 181 (278) T ss_pred -----CCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC--CCCCHHHHHHHHHHHHH--HhccCCCceec Confidence 1234579999999988887666555442211111111222222 33444445556555543 34455557777 Q ss_pred EcCCceeEEEecccCCh--HHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHH Q lcl|Aclame:pro 362 DKATEEFFQFNTPLSGL--DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVI 439 (695) Q Consensus 362 d~~~e~~~~~~~~lsgl--~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~ 439 (695) ++ +.+|++++.+.... .+......+.||++.|||-..| |...++-.++.+.-.++||..+ |.|.++.+- T Consensus 182 ~~-g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l-g~~~~~~~sn~~~~~~~~~~~~-------l~P~~~~i~ 252 (278) T protein:vir:78 182 EP-GVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFL-NARSNTNFAKNEELNRFYLQHT-------LLPIVKQYE 252 (278) T ss_pred CC-CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHh-CCCCCCCcccHHHHHHHHHHHH-------HHHHHHHHH Confidence 64 67899998776644 3666778889999999995555 7655444455555566676654 788888887 Q ss_pred HHHHHHhcCC--CCCceeEEecccccc Q lcl|Aclame:pro 440 VMIQLSLFGA--VDPSIKWQWNALREL 464 (695) Q Consensus 440 ~~l~~s~~g~--~~~d~~~~f~pL~~~ 464 (695) +.+-+..+.. ...++.|.|+ +..+ T Consensus 253 ~~ln~~L~~~~e~~~g~~~~f~-~~~l 278 (278) T protein:vir:78 253 EEFNRKLLTKTDREKIGILNLT-LNLI 278 (278) T ss_pred HHHHhhcCChhHhcCCceEEEe-cccC Confidence 7776655543 2234555555 3333 No 94 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=99.05 E-value=1.1e-09 Score=69.79 Aligned_cols=348 Identities=14% Similarity=0.095 Sum_probs=173.3 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |+=-+.|..+. ..++......... +..+. ...++. .....+++-+ T Consensus 1 M~~~~~f~~r~----------------------~~~~~~~~~~~~~---------~~~~~-~~~~v~---~~~al~~~av 45 (359) T protein:vir:10 1 MSILNPFERRS----------------------SITPNNYYPFMVQ---------NGSIV-PNSLVD---ATEALKNSDL 45 (359) T ss_pred Ccccchhhccc----------------------cCCCCcchhhhhc---------ccccc-CCcccC---HHHhhcchHH Confidence 33333221110 0000000000000 00000 001111 1111234556 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPYF 204 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~i 204 (695) ..+|+++|++.-.. .+++ ......|..+=..+--...|.+.+. +--|+|-+++++ T Consensus 46 ~~cv~~ia~~ia~~--p~~~----------------------~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i 101 (359) T protein:vir:10 46 YAVTSLISSDIAGT--RFIG----------------------NQVFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAI 101 (359) T ss_pred HHHHHHHHHhhhcC--cccc----------------------chHHHHHhhcccccCCHHHHHHHHHHhccccCceEEEE Confidence 67788877765321 1211 1122223222222333444555555 444678888776 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc------ceEEchhhEEEecC Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI------GTEVHATRLHTIVS 278 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~------~~~iH~SRli~~~~ 278 (695) .-++ .|.+..+.++.+..+++... .+ ...|+|. ...++++.||||.. T Consensus 102 ~r~~-----------------~g~~~~l~~l~~~~v~i~~~--~~--------~~~y~~~~~~~~~~~~~~~~evih~~~ 154 (359) T protein:vir:10 102 LKGD-----------------NSLMKELRLIPSNAITIDLT--DD--------TLTYEVNQFDDYPSAKYNASEMIHVKI 154 (359) T ss_pred EECC-----------------CCeEEEEEEeCCceEEEEEc--CC--------eEEEEEEecCCceEEEEcccceEEecc Confidence 5321 23345677777777765221 11 1123332 35789999999987 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNR 356 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~ 356 (695) ...+.. +...+.|.|.++.+.+.+.....+.......+..... .+++++. ..++.+..+.+.++++......+.. T Consensus 155 ~~~~~~--~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~-~~l~~e~~~~~~~~~~~~~~~~n~g 231 (359) T protein:vir:10 155 MAYGVD--TLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQ-GTLSSEAKDSIRKEFEKANGGNNSG 231 (359) T ss_pred CCCCCC--ccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCCHHHHHHHHHHHHHHhCccccC Confidence 543211 2244579999999999998888888877776655432 3555542 2345555566777776654443333 Q ss_pred eeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~ 434 (695) +..+++. +.+|+.++.+... +-+......+.||.+-+||-.+|-| . +.-+++.+ .++.+|.. ..+ ..+.|. T Consensus 232 ~~~vl~~-g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~-~-~~~~~~~~-~~e~~~~~--~l~-~~l~p~ 304 (359) T protein:vir:10 232 RVMVLDQ-SADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNG-T-GDQQSSLD-QIKDLYVN--ALN-RFIEPL 304 (359) T ss_pred CceecCC-CcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCC-C-CcccccHH-HHHHHHHH--HHH-HHHHHH Confidence 4677774 6788888765443 3355566678899999999988733 2 22222222 23233211 111 123444 Q ss_pred HHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhh Q lcl|Aclame:pro 435 MNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDG 504 (695) Q Consensus 435 l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~ 504 (695) ++.+-..+... +.+....+...+.... ......++..|+++++|+|+.+...+-. T Consensus 305 ~~~l~~~l~~~--------~~~~~~~~~~~d~~~~-------~~~~~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 305 ISELRIKCDSS--------IGVDMSPITDYSNSVF-------KADILNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHHHHHhhhh--------hcccchhhhhcCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 44433222211 1122222222222211 1234457788999999999988766666 No 95 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=99.05 E-value=9e-11 Score=75.67 Aligned_cols=361 Identities=11% Similarity=0.048 Sum_probs=166.9 Q ss_pred CCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCc Q lcl|Aclame:pro 77 VSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGL 156 (695) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~ 156 (695) +|........... ........+..|+..+...++..++++|+++|++.-.--+++.-....+ . T Consensus 1 Mg~f~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~-----~ 63 (378) T protein:vir:16 1 MNLFGKVVSFSRG------------KLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD-----V 63 (378) T ss_pred Cccchhhhhhhcc------------cccCCcceeeecccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEcccc-----c Confidence 1111111000000 0011112223333333445667789999999998765433322111100 0 Q ss_pred cccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEe Q lcl|Aclame:pro 157 AAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVV 235 (695) Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~ 235 (695) .... .....+.+....|..+=...--...|.+.+.... |+|-+++++..++. .|.+.++.+. T Consensus 64 ~~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~----------------~g~~~~l~~~ 126 (378) T protein:vir:16 64 GSDT-LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDN----------------TGELLDLLFA 126 (378) T ss_pred cccc-ccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecC----------------CceEEEEEec Confidence 0000 0001112222222211112222334444444444 47888887654321 1223333211 Q ss_pred cchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH Q lcl|Aclame:pro 236 EPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 315 (695) Q Consensus 236 d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~ 315 (695) + .++.+.++.||||.+ +.+...|.|.++.+...+....... T Consensus 127 ~---------------------------~~~~~~~~diih~r~--------~~~~~~~~s~l~~~~~~i~~~~~~~---- 167 (378) T protein:vir:16 127 D---------------------------DKKEYKPEELVRLTS--------PFYINEDTSILDNALASIQTKLEQG---- 167 (378) T ss_pred C---------------------------CeeEecccceEEecC--------ccCccchhHHHHHHHHHHHHHHhcC---- Confidence 1 123456778888864 1233457777777776654432211 Q ss_pred HHHHHhccceeeechHHhhcchHHHHHHHHHHH----HHHhcCCceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHH Q lcl|Aclame:pro 316 DIVKQFSVSGILMDLAQALMPGANVDLSMRAEL----INRYRDNRNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQM 389 (695) Q Consensus 316 ~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~----~~~~~~n~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~i 389 (695) .--.+++++ ..+..+...++.++++. .....++.+++++++ +.+|+.++.+.. .+.. .....++| T Consensus 168 -----~~~g~l~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~-g~~~~~l~~~~~~~~~~~-~~~~~~~I 238 (378) T protein:vir:16 168 -----KLRGLLKIN--AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN-KTEIVELKKDYSVLNKDE-IDLIKSEL 238 (378) T ss_pred -----ccceeeEeC--CcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCC-CceEEEccCChhhhhHHH-HHHHHHHH Confidence 111234443 22333333334444432 222334456778874 778999887654 3433 35566789 Q ss_pred HhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC----------CCceeEEec Q lcl|Aclame:pro 390 SAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV----------DPSIKWQWN 459 (695) Q Consensus 390 aaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~----------~~d~~~~f~ 459 (695) |.+-+||..+|-|. +.|....+||.. -|.|.+..+-+-+-+..+... ..++.|.++ T Consensus 239 a~~fgVPp~~l~g~-------~~e~~~~~f~~~-------tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~ 304 (378) T protein:vir:16 239 LTGYFMNENILLGT-------ASQEQQIYFYNS-------TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) T ss_pred HHHhCCCHHHhcCC-------chHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccc Confidence 99999999988542 224445566543 377777776666554433211 124667778 Q ss_pred cccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcc Q lcl|Aclame:pro 460 ALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGD 539 (695) Q Consensus 460 pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (695) .|...+.++++ +...+++..|+++.+|+|..+...+..+................ .. . . ..... T Consensus 305 ~l~~~d~~~~~-------~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~-----~~-~--~-~~~~~ 368 (378) T protein:vir:16 305 LFKFATLKELI-------DLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNL-----SD-L--Q-GSRKD 368 (378) T ss_pred hhhhcCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccccccccch-----hh-h--c-CccCC Confidence 88888887764 45677888899999999998776654332111100000000000 00 0 0 00000 Q ss_pred cccccccCCCccch Q lcl|Aclame:pro 540 TGAPGGARAGATAP 553 (695) Q Consensus 540 ~~~~~~~~~~~~~~ 553 (695) ..+ ....... T Consensus 369 ~~~----~~e~~ne 378 (378) T protein:vir:16 369 VTS----TDETNNQ 378 (378) T ss_pred CCC----CCCCCCC Confidence 000 0000000 No 96 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=99.04 E-value=1.5e-10 Score=74.52 Aligned_cols=362 Identities=12% Similarity=0.064 Sum_probs=169.0 Q ss_pred CCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCc Q lcl|Aclame:pro 77 VSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGL 156 (695) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~ 156 (695) +|............. ......|..++..+...++..++++|+++|++.-.-=+++......+ . T Consensus 1 Mg~f~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~-----~ 63 (378) T protein:vir:94 1 MNLFGKVVSFSRGKL------------NNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD-----V 63 (378) T ss_pred CCccccchhcccccc------------cCCcceeeeeccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccC-----c Confidence 222211111000000 00111233333344455677889999999999765433322111100 0 Q ss_pred cccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEe Q lcl|Aclame:pro 157 AAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVV 235 (695) Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~ 235 (695) ... ....-.+......|..+=...--...|.+.+.+. -++|-+++++..++. .|.+.++.+. T Consensus 64 ~~~-~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~----------------~g~~~~l~p~ 126 (378) T protein:vir:94 64 GSD-TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN----------------TGELLDLLFA 126 (378) T ss_pred ccc-cccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCC----------------CceEEEEEec Confidence 000 0000011112222221111122233444444444 457888887654321 1223333211 Q ss_pred cchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH Q lcl|Aclame:pro 236 EPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 315 (695) Q Consensus 236 d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~ 315 (695) + .++.+.++.||||.+ +.+...|.|.++.+...+..+-+.. T Consensus 127 ~---------------------------~~~~~~~~diiH~~~--------~~~~~~g~s~l~~~~~~i~~~~~~~---- 167 (378) T protein:vir:94 127 D---------------------------DKKEYKPEELVRLTS--------PFYINEDTSILDNALASIQTKLEQG---- 167 (378) T ss_pred C---------------------------CeeEeeeeeeEEecC--------cCCccchhHHHHHHHHHHHHHHhcc---- Confidence 0 124567788888874 1233468899988888776543221 Q ss_pred HHHHHhccceeeechHHhhcchHHHHHHHHHH----HHHHhcCCceeEEEEcCCceeEEEecccCChH-HHHHHHHHHHH Q lcl|Aclame:pro 316 DIVKQFSVSGILMDLAQALMPGANVDLSMRAE----LINRYRDNRNILFLDKATEEFFQFNTPLSGLD-ALQAQAQEQMS 390 (695) Q Consensus 316 ~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~----~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~-~~~~~~~~~ia 390 (695) . --.+++++ ..+..+..+.+.+++. ......++.++++++. +.+|++++.+....+ .......+.|| T Consensus 168 ~-----~~gil~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~-g~~~~~l~~~~~~~~~~~~~~~~~~Ia 239 (378) T protein:vir:94 168 K-----LRGLLKIN--AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN-KTEIVELKKDYSVLNKDEIDLIKSELL 239 (378) T ss_pred c-----ccceeeeC--CcCCHHHHHHHHHHHHHHHHHhhcccccccceecCC-CceEEEccCChhhhhHHHHHHHHHHHH Confidence 0 01244554 2233333333434432 2222334446778875 678998887655433 23355667899 Q ss_pred hhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC----------CCCceeEEecc Q lcl|Aclame:pro 391 AVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA----------VDPSIKWQWNA 460 (695) Q Consensus 391 aas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~----------~~~d~~~~f~p 460 (695) .+-+||..+|-|. ..|....+||.. -|.|.+..+-+-+-+..+.. .-.++.|.+.. T Consensus 240 ~~fgVP~~~l~~~-------~se~~~~~f~~~-------tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~ 305 (378) T protein:vir:94 240 TGYFMNENILLGT-------ASQEQQIYFYNS-------TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQL 305 (378) T ss_pred HHhCCCHHHhcCC-------hHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchh Confidence 9999999988442 124345566533 47888877666554433321 01235667777 Q ss_pred ccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccc Q lcl|Aclame:pro 461 LRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDT 540 (695) Q Consensus 461 L~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (695) |...+.+++ ++...++++.|+++.+|+|..+...+..+.................... ...... T Consensus 306 l~~~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~---------~~~~~~ 369 (378) T protein:vir:94 306 FKFATLKEL-------IDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQ---------GSRKDV 369 (378) T ss_pred hhhcCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccccccchhhc---------CCcCCC Confidence 777777766 4566677888999999999987665544321111000000000000000 000000 Q ss_pred ccccccCCCccch Q lcl|Aclame:pro 541 GAPGGARAGATAP 553 (695) Q Consensus 541 ~~~~~~~~~~~~~ 553 (695) .. ....... T Consensus 370 ~~----~~e~~n~ 378 (378) T protein:vir:94 370 TS----TDETNNQ 378 (378) T ss_pred CC----CCCCCCC Confidence 00 0000000 No 97 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=99.03 E-value=1e-10 Score=75.31 Aligned_cols=362 Identities=11% Similarity=0.048 Sum_probs=167.4 Q ss_pred CCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCc Q lcl|Aclame:pro 77 VSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGL 156 (695) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~ 156 (695) +|....-.. +.... . ......+..|+-.+...++..+.++|+++|++.-.--+++......+. T Consensus 1 Mg~f~~~~~----f~~~~--~------~~~~~~~~~~~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~----- 63 (378) T protein:vir:93 1 MNLFGKVVS----FSRGK--L------NNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV----- 63 (378) T ss_pred Cccchhhhh----hhccc--c------CCCcceeeecccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEccccc----- Confidence 111110000 00000 0 011111222333333446667888999999887665444322111100 Q ss_pred cccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEe Q lcl|Aclame:pro 157 AAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVV 235 (695) Q Consensus 157 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~ 235 (695) .... ...-.+.+....|..+=...--...|.+.+.+.. ++|-+++++..++. .|.+.++.+. T Consensus 64 ~~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~----------------~g~~~~l~~~ 126 (378) T protein:vir:93 64 GSDT-LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDN----------------TGELLDLLFA 126 (378) T ss_pred cccc-ccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecC----------------CceEEEEEec Confidence 0000 0000111222222211111222334444444443 57888877654321 1223222211 Q ss_pred cchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH Q lcl|Aclame:pro 236 EPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 315 (695) Q Consensus 236 d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~ 315 (695) + .++.+.++.|||+.+ +.+...|.|.++.+...+..+-... T Consensus 127 ~---------------------------~~~~~~~~diih~r~--------~~~~~~~~s~l~~~~~~i~~~~~~~---- 167 (378) T protein:vir:93 127 D---------------------------DKKEYKTEELVRLTS--------PFYINEDTSILDNALASIQTKLEQG---- 167 (378) T ss_pred C---------------------------CeeEeccceeEEecC--------ccccchhhHHHHHHHHHHHHHHhcC---- Confidence 0 134566778888864 1244568888888777665443211 Q ss_pred HHHHHhccceeeechHHhhcchHHHHHHHHHHH----HHHhcCCceeEEEEcCCceeEEEecccCChH-HHHHHHHHHHH Q lcl|Aclame:pro 316 DIVKQFSVSGILMDLAQALMPGANVDLSMRAEL----INRYRDNRNILFLDKATEEFFQFNTPLSGLD-ALQAQAQEQMS 390 (695) Q Consensus 316 ~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~----~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~-~~~~~~~~~ia 390 (695) .--.+++++ ..+..+....+.++++. .....++.+++++++ +.+|+.++.+....+ +......+.|| T Consensus 168 -----~~~g~l~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~~~~~~~~~~~~~Ia 239 (378) T protein:vir:93 168 -----KLRGLLKIN--AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN-KTEIVELKKDYSVLNKDEIDLIKSELL 239 (378) T ss_pred -----cccceeeeC--CcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCC-CceEEEccCChhhhhHHHHHHHHHHHH Confidence 111244544 22333333344444432 222234456778875 788999887655433 33456678999 Q ss_pred hhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC----------CCceeEEecc Q lcl|Aclame:pro 391 AVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV----------DPSIKWQWNA 460 (695) Q Consensus 391 aas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~----------~~d~~~~f~p 460 (695) .+-+||..+|-|. ..|....+||.. -|.|.+..+-+-+-+..+... ..++.|.++. T Consensus 240 ~~fgVPp~~l~g~-------~~e~~~~~f~~~-------tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~ 305 (378) T protein:vir:93 240 TGYFMNENILLGT-------ATQEQQIYFYNS-------TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQL 305 (378) T ss_pred HHhCCCHHHhcCC-------cHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccch Confidence 9999999988441 224344555533 467777666665544333211 1236677777 Q ss_pred ccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccc Q lcl|Aclame:pro 461 LRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDT 540 (695) Q Consensus 461 L~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (695) |...+.+++ +++..+++..|+++++|+|..+...+..+................ ..... . .... T Consensus 306 l~~~d~~~~-------~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~------~~~~~--~-~~~~ 369 (378) T protein:vir:93 306 FKFATLKEL-------IDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNL------SDLQG--S-RKDV 369 (378) T ss_pred hhhcCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccccccccch------hhhcC--c-cCCC Confidence 888877776 456777888999999999998776554432111000000000000 00000 0 0000 Q ss_pred ccccccCCCccch Q lcl|Aclame:pro 541 GAPGGARAGATAP 553 (695) Q Consensus 541 ~~~~~~~~~~~~~ 553 (695) . ........ T Consensus 370 ~----~~~e~~n~ 378 (378) T protein:vir:93 370 T----STDETNNQ 378 (378) T ss_pred C----CCCCCCCC Confidence 0 00000000 No 98 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=98.99 E-value=1.4e-09 Score=69.11 Aligned_cols=488 Identities=14% Similarity=0.076 Sum_probs=207.9 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHH-HHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTL-VLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~-a~~~~~~~ 124 (695) |++ +.-+..+...+.+.... +.+.++..... .+|+. .. +.+..| .+++.++. T Consensus 1 ~~~--------------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~-pp-~~~~~La~~~~~n~~ 53 (540) T protein:vir:41 1 MFN--------------YHLSIKSLEKYRAIKGD-------TDSQALKEDRF----EEYVE-PK-VHPLVLLSLLQVNPY 53 (540) T ss_pred CCC--------------cccChhhccchhhhhcc-------ccccccccCCC----Ccccc-CC-CCHHHHHHHHHhcHH Confidence 222 22222222111111100 00111110000 02221 11 223344 45567999 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPY 203 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~ 203 (695) ++.+|++.|++.-.-.+++.... ....+.+. ...--+..|.+.+. ..-++|-++++ T Consensus 54 v~scI~~ia~~ia~~~~~i~~~~--------------------~~~~~~lp---N~~~t~~~f~~~~v~dlll~Gnayv~ 110 (540) T protein:vir:41 54 HASACSIKANDILRTGYLIDGDD--------------------GGVEELLR---ACRPSFEFILLQALEDLQVFNYCTLE 110 (540) T ss_pred HHHHHHHHHHHHhcCCceEecCc--------------------cchhhhcc---CCCCCHHHHHHHHHHHHHhcCCeEEE Confidence 99999999999887766653211 01111110 11111223333333 34468988877 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccce-----ecccc----cccccCCceeEEEc----ceEEch Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNY-----NSINP----VADDFYKPSTWWMI----GTEVHA 270 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~-----~~~dp----~s~~yg~P~~y~i~----~~~iH~ 270 (695) +.-+. .|.+.+|.++++..|++... ...|. ....|+.+..+... ...+.+ T Consensus 111 i~r~~-----------------~G~~~~L~~i~~~~V~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (540) T protein:vir:41 111 VVRDD-----------------QGEPVRLDYIPAHTVRVHRDGSRYMQTWDGIHVTYFKDYRYEGEVNPDNGEDQDGVGA 173 (540) T ss_pred EEECC-----------------CCcEEEEEEeCCcceEEeEcCceeEeeecCceeeeeecccccceeeccccccceeecc Confidence 75422 23456677777777654211 11111 11122222221111 135677 Q ss_pred hhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeech--H--HhhcchHHHHHHH Q lcl|Aclame:pro 271 TRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDL--A--QALMPGANVDLSM 344 (695) Q Consensus 271 SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~--~--~~l~~~~~~~l~~ 344 (695) +-||||.... +.....|.|.+..+...+.....+......++..... .+++++. . ..+..+....+.+ T Consensus 174 ~eViHir~~~------~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~~~~~~~~ 247 (540) T protein:vir:41 174 NEIIFIHLPS------PICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSDGEPTGRT 247 (540) T ss_pred cceEEecCCC------CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchHHHHHHHH Confidence 8898886543 2345689999999999988887777777776654333 2344432 1 2233444444555 Q ss_pred HHHHHH-----HhcCCceeEEE-Ec-----CCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCccc-cc- Q lcl|Aclame:pro 345 RAELIN-----RYRDNRNILFL-DK-----ATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTG-LN- 409 (695) Q Consensus 345 r~~~~~-----~~~~n~~~~~l-d~-----~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~G-ln- 409 (695) +++..- ....|.|..++ .. ++-+|..++.+.. .+-+......+.||++.+||-.+| |...+| .| T Consensus 248 ~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~l-G~~~~~~~n~ 326 (540) T protein:vir:41 248 VLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRL-GITDVGPLGG 326 (540) T ss_pred HHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHc-CcccCCCCCc Confidence 554321 12345555444 21 1235666655433 344566778888999999998876 865432 33 Q ss_pred CcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcc Q lcl|Aclame:pro 410 ASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVI 489 (695) Q Consensus 410 atge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i 489 (695) |+.|....+||..+ |.|.++.+-..+-+..+-..+.++.|+|+...-+.. +. +.....++..|++ T Consensus 327 sn~eq~~~~f~~~t-------L~P~~~~ie~~ln~~L~~~~~~~~~i~f~~~~ll~~-D~-------~~~~~~lv~~G~l 391 (540) T protein:vir:41 327 NFAEVARRTYYESV-------VRPQQEIVSSVLTDFIQLKLDPGARFVFNEEILMES-EF-------VHNYALLVQCGVL 391 (540) T ss_pred ccHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhccCCceEEEecchhhcch-HH-------HHHHHHHHhCCCC Confidence 44565567777543 677777765555432222334567788876443322 22 1224457789999 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccc-cc Q lcl|Aclame:pro 490 RPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPR-EA 568 (695) Q Consensus 490 ~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 568 (695) +.+|+|+.+...+. ..... .. .......................... .......... ...... .. T Consensus 392 T~NE~Re~L~g~e~--gdd~~---l~-p~n~~~~~~~~~~~~~~~~~~~~~~k-----~~~~~~~~~~---~~~~~~~~~ 457 (540) T protein:vir:41 392 TPSEVREKLFGLDG--GPDMF---MV-PSSIGKSAMKRQKRNYEKNQINEIKR-----TYAKYKPRIQ---EIISSESPL 457 (540) T ss_pred CHHHHHHHhCcCcC--CCccc---cc-ccccccccccccccccCCCCcccccc-----ccchhccccc---Ccccccccc Confidence 99999865422111 11000 00 00000000000000000000000000 0000000000 000000 00 Q ss_pred cccCceEEEEEEEE-----EcCCeEEEEEeCC--------CceeCCc--ceeCCCCCHHHHHHHHHHHhcCceEeEEEEe Q lcl|Aclame:pro 569 GAQDAAMRAAGAVY-----VVDGKVLLMKRPA--------GDWGLPA--GKVEGNETPEEAARRETREETGYDHDGELVP 633 (695) Q Consensus 569 ~~~~~~~~~~~~i~-----~~~~~vLL~~r~~--------g~W~lPG--G~vE~gEs~~~aa~REv~EEtGl~v~~~~~~ 633 (695) ........-.-.-+ ....++|-+.+.- |.=.+|. -.+|.-|.+.+|-+..+-|-.- .|+ T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 531 (540) T protein:vir:41 458 EDKKKKIDEVLSDFRAEAYENGKKMLSIAGDMGTMSAINRGVSMIPPKPSNLEAYEDLLAASVDDIVERIR------HYL 531 (540) T ss_pred ccccccccccccccCCccccchhHHHHHhhhhhhhhhhhcCceecCCCCcchHHHHHHHHhhHHHHHHHHH------HHH Confidence 00000000000000 0011233333321 2222332 2345556666666655544321 111 Q ss_pred cCcccEEEE Q lcl|Aclame:pro 634 LGKFDGFFH 642 (695) Q Consensus 634 ~~~~~~~~~ 642 (695) +..+.|.-. T Consensus 532 ~~~~~~~~~ 540 (540) T protein:vir:41 532 YKVIGWREL 540 (540) T ss_pred HHHhhhccC Confidence 111111000 No 99 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=98.98 E-value=7.5e-10 Score=70.60 Aligned_cols=362 Identities=10% Similarity=0.041 Sum_probs=162.8 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhcc-CCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeec Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTS-SGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIG 145 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~ 145 (695) +..|...- .++.. ..+... ..|... .-..+.+++.+.++|+.++.++-+--+++.. T Consensus 1 Mg~f~~l~---------------------~~~~~-~~~~~~~~~~~~~-~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~ 57 (376) T protein:vir:78 1 MGFFSELF---------------------KRNKE-IEWMWDLDFLEDK-TTKVYLKKMALNTCVKHIARTIAKSDFRLKN 57 (376) T ss_pred Cchhhhhh---------------------ccCCc-cccccchhhcccc-chhhhhhhHHHHHHHHHHHHhhcccceeecc Confidence 22111100 00000 000000 011100 1122345778899999999998775544421 Q ss_pred cchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCc-cceEEEEEEEcCCCchhccccCCccccc Q lcl|Aclame:pro 146 GTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQA-FGRAHPYFKIKGDDQIMDTPLVPRPYTV 224 (695) Q Consensus 146 ~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl-~G~~~i~i~~~~d~~~~~~Pl~~~~~~i 224 (695) +. ...+......|...=...-.+..|.+.+.+..+ +|-+++++.-++++. T Consensus 58 ~~----------------~~~~~~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~------------- 108 (376) T protein:vir:78 58 GE----------------TSVRDKLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFL------------- 108 (376) T ss_pred cc----------------ccccchHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCee------------- Confidence 10 111222222333332333345555555555444 566666654332211 Q ss_pred cCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHH Q lcl|Aclame:pro 225 PKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYI 304 (695) Q Consensus 225 ~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l 304 (695) +..+.++.+..+.+..+. .....+|+. .+.+..+.|++|.....| |.+.+..+.+.. T Consensus 109 ----~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~evih~~~~~~~----------~~~~~~~~~~~~ 165 (376) T protein:vir:78 109 ----IADSYVRKEFAFFPDVFE--GVTVKDYRY-------NRNFSMDDVIFLEYGNER----------LSAFTDGMFEDY 165 (376) T ss_pred ----eccceeecccceeeeeee--eeeeeccee-------eeeeccccEEEeccCCCC----------chhhhhHHHHHH Confidence 111222222222222111 111112211 134667788888643221 223333332222 Q ss_pred HHHHHHhHHHHHHHHHhccce-eeechHHhhcchHHHHHHHHHHHHHHh-cCCce-eEEEEcCCceeEEEecccCCh--- Q lcl|Aclame:pro 305 DNWLRTRQSVSDIVKQFSVSG-ILMDLAQALMPGANVDLSMRAELINRY-RDNRN-ILFLDKATEEFFQFNTPLSGL--- 378 (695) Q Consensus 305 ~~~~~~~~~~~~l~~~~~~~v-~k~~~~~~l~~~~~~~l~~r~~~~~~~-~~n~~-~~~ld~~~e~~~~~~~~lsgl--- 378 (695) ........ ....+..+... +++.....++.+..+.+.++++..-.. .++.+ +++++ ++-+|+.++.+...+ T Consensus 166 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~v~~l~-~g~~~~~l~~~~~~~~~~ 242 (376) T protein:vir:78 166 GELFGKMI--RAQMRNFQIRGAVNFKMAGVADKDKQTKLQEYIDKVYASFNNNEIAIVPQL-EGFNYEEFGTTSVNNSQS 242 (376) T ss_pred HHHHHHHH--HHHHhcCCCceeEEEccCCCCCHHHHHHHHHHHHHHhccccccCcceEEcC-CCceEEeeccCccccchh Confidence 21111111 11122222222 223222344444445555555443332 23333 34466 467899988776543 Q ss_pred ----HHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCce Q lcl|Aclame:pro 379 ----DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSI 454 (695) Q Consensus 379 ----~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~ 454 (695) -+......+.||.+-+||-.+|-| -.++-|.-...||.. -|.|.+..+-+.+-+..++. .++ T Consensus 243 ~~q~~e~~~~~~~~Ia~~fgVPp~~l~~-----~~s~~e~~~~~f~~~-------~l~P~~~~ie~~l~~kll~~--~~~ 308 (376) T protein:vir:78 243 FDEVKKLRKEMIDYVASILGIPSSLLHG-----DMADLSNNMKAYMEY-------CIDPLTKKLEDELNAKLFTF--SEF 308 (376) T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHhCC-----CCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhCCc--ccc Confidence 444455567899999999998833 223334444555554 37888877777666555543 344 Q ss_pred e--EEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 455 K--WQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQ 532 (695) Q Consensus 455 ~--~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (695) . +.+..+...+.+++ +++..+++..|+++++|+|..+...+..+.... ................ T Consensus 309 ~~~~~~~~ll~~d~~~~-------~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~d---~~~~~~n~~~~~~~~e---- 374 (376) T protein:vir:78 309 LAGEHIKIIHKKDIIEN-------AEAVDKLVASGSFNRNEVRELLGAERVDNPELD---KYLITKNYQSADEGGE---- 374 (376) T ss_pred eecccchhhcccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc---eeeeccCceehhcccc---- Confidence 4 44445555555444 667778899999999999998876654332110 0000000000000000 Q ss_pred hhh Q lcl|Aclame:pro 533 RLA 535 (695) Q Consensus 533 ~~~ 535 (695) .+ T Consensus 375 -~g 376 (376) T protein:vir:78 375 -DG 376 (376) T ss_pred -CC Confidence 00 No 100 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=98.98 E-value=4.9e-10 Score=71.64 Aligned_cols=367 Identities=10% Similarity=0.062 Sum_probs=168.5 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +.-|.++-.+- ......+. ..+. .++. -..+.++..+.++|+++|.+..+--+++..+ T Consensus 1 Mg~f~~~f~~~------~~~~~~~~----------~~~~--~~~~----~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~ 58 (385) T protein:vir:95 1 MGLFDSVFKRH------SELSWMYD----------LEFL--QDKS----KKAYLKQIALNTVVEMVARTISQSEFRVMKN 58 (385) T ss_pred CchhhhhhccC------cccccccc----------hhhh--hccc----hhhhhhhHHHHHHHHHHHHHHcccceeeeec Confidence 22222211100 00000000 0000 0000 1223467888999999999988765544221 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) . ...+.+....|...=..+--+..|.+.+.+.. ++|-+++++. .++. .++... T Consensus 59 ~----------------~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~--~~~~---~~~~~~----- 112 (385) T protein:vir:95 59 N----------------TKEKGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKN--DEGH---FFVADD----- 112 (385) T ss_pred C----------------ccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEe--cCCC---eeeccc----- Confidence 1 01111222222211112223344444444343 5787776543 2221 111000 Q ss_pred CcceEEEEEecchhccccceecccccccccCCceeEEEc-ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHH Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI-GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYI 304 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~-~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l 304 (695) +..+.... .....|+........ .+.+-++.||+|...... ....|.|.++.+.+.+ T Consensus 113 -------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~------~~~~G~s~~~~~~~~i 170 (385) T protein:vir:95 113 -------------FEKEDELG---LYSHRFTNVLVNDFEFKRVFTMDDVIYLKYNNQK------LDAFSLGLFEDYGEIF 170 (385) T ss_pred -------------cccccccc---cccccceeeeecccceeeeeccccEEEecCCCCC------cccccchHHHHHHHHH Confidence 00011000 000011111110000 123456678887754321 2346999999888776 Q ss_pred HHHHHHhHHHHHHHHHhcc-ceeeechHHhhcchHHHHHHHHHHHH-HHhcCCce-eEEEEcCCceeEEEecccC----- Q lcl|Aclame:pro 305 DNWLRTRQSVSDIVKQFSV-SGILMDLAQALMPGANVDLSMRAELI-NRYRDNRN-ILFLDKATEEFFQFNTPLS----- 376 (695) Q Consensus 305 ~~~~~~~~~~~~l~~~~~~-~v~k~~~~~~l~~~~~~~l~~r~~~~-~~~~~n~~-~~~ld~~~e~~~~~~~~ls----- 376 (695) .....+. .+..+. .+++++....+..+..+.+.++++.. ...+++.+ +++++ ++.+|+.++.... T Consensus 171 ~~~~~~~------~~~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~i~~l~-~g~~~~~l~~~~~~~~s~ 243 (385) T protein:vir:95 171 GRMIDLQ------MLNNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAFQNNTIAVVPLT-EGLAYEEHSNRGAAQSAQ 243 (385) T ss_pred HHHHHHH------HhcCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhhhhcCCceEEcC-CCceeEeecccccccCCH Confidence 5433221 222222 23344333334444444555555433 23334444 45566 4778988875432 Q ss_pred ---ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC--- Q lcl|Aclame:pro 377 ---GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV--- 450 (695) Q Consensus 377 ---gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~--- 450 (695) .+-+.......+||.+-+||..+|-| -.++.|.....||... |.|.+..+-+.+-+..+... T Consensus 244 ~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~-----~~sn~e~~~~~~~~~~-------l~P~~~~ie~~l~~~L~~~~~~~ 311 (385) T protein:vir:95 244 QFSELNELKKTVLTDVARMIGVPPSLVLG-----EMADLEKTIESYLQFC-------INPLLRKIEAELNSKFFYQDEYL 311 (385) T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHhcC-----CCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCChhhcc Confidence 34456666777899999999998833 2244454556666543 78888777766655444321 Q ss_pred CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhh-hhhhh-hhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 451 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGP-YAGKL-DANDDPGVPADDDIDGVL 528 (695) Q Consensus 451 ~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 528 (695) ...+.|.+..|...+.+++ +++..+++..|+++++|+|..+...+... ..... .......... . T Consensus 312 ~~~~~fd~~~l~~~D~~~~-------~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~gd~~~~~~n~~~~~~----~--- 377 (385) T protein:vir:95 312 NDDMHIKVVGIDKRDPLKL-------SEAIDKLVASGTFTRNQVRIMTGEEPADDPELDKFIITKNLQSADA----F--- 377 (385) T ss_pred cceEEEechhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceeccc----c--- Confidence 1135556667766666665 45666788899999999999886543311 11100 0000000000 0 Q ss_pred hhhhhhhhhccc Q lcl|Aclame:pro 529 TYVQRLAEGGDT 540 (695) Q Consensus 529 ~~~~~~~~~~~~ 540 (695) .-+..... T Consensus 378 ----kgge~~~e 385 (385) T protein:vir:95 378 ----KGGESNEE 385 (385) T ss_pred ----cCCCCCCC Confidence 00000000 No 101 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=98.97 E-value=7.4e-10 Score=70.63 Aligned_cols=386 Identities=10% Similarity=-0.008 Sum_probs=170.9 Q ss_pred hccCCC-CchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhch Q lcl|Aclame:pro 105 VTSSGF-PGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRI 183 (695) Q Consensus 105 ~~~~~f-~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~ 183 (695) |-..+. .-|-.+....-....++|||+.++=+.=++++. + +.+..+.+.+.|++-++ T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~~ivd~~~~~l~~~gf~~---------------------~-d~~~~~~~~~i~~~N~~ 58 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCGLIANASVHRLLALGVTG---------------------P-DGEPDTRASRWWQANRL 58 (434) T ss_pred CCCCCccHHHHHhhhhhhccchHHHHHHHHhhhccCceec---------------------C-CCchHHHHHHHHHhcCh Confidence 111111 112222222223456888888776444334321 1 12233556777887788 Q ss_pred HHHHHHHHHhcCccceEEEEEEEcCCCchh-ccccCCccccccCcceEEEEEecchhccccceecccccccccCC----- Q lcl|Aclame:pro 184 RDAVRTTVIHDQAFGRAHPYFKIKGDDQIM-DTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYK----- 257 (695) Q Consensus 184 ~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~-~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~----- 257 (695) .....++.+.+-.||.++.++..+.+.... .+|. ..|++++|.++.+.. +... ..+.++- T Consensus 59 d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~------------~~I~~~~p~~~~~i~-D~~~-~~~~~ai~~~~~ 124 (434) T protein:vir:98 59 DSRQKLVWRMAMAQSAGYMLVGAHPTRTEDNGRPS------------PLITMEHPSECIVEY-DPET-GEPLVGLKVWHN 124 (434) T ss_pred hHHHHHHHHHHhhcCceEEEEecCCCcccccCCce------------eEEEEeccceeEEEE-eCCC-CceEEEEEEEEe Confidence 889999999998999999888765433211 0111 113344444433211 0000 0011110 Q ss_pred -----c--eeEE-------E----cc-------------eEEchhhEEEecCCcch-hhhhcccCCCCchHHHHHHHHHH Q lcl|Aclame:pro 258 -----P--STWW-------M----IG-------------TEVHATRLHTIVSRPVG-DMLKPTYSFAGISMTQLAMPYID 305 (695) Q Consensus 258 -----P--~~y~-------i----~~-------------~~iH~SRli~~~~~~~p-~~~~~~~~~~G~S~l~~~~~~l~ 305 (695) . ..|. . .+ ..+|.+.-+.|..-|+. ..-.+....+|.|.++.+.+.+. T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~~g~sd~e~vi~liD 204 (434) T protein:vir:98 125 DIDGFGYARVFFDDTSFPYRTRERTGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGEDPEPEFAGVLDIQD 204 (434) T ss_pred ccCCceEEEEEEeCcEEEEEEeeccccccccccccceecccccccccCCCCccceEEeccCCCcCcCCcchhhhHHHHHH Confidence 0 0000 0 00 00111111112222211 11122223579999999999999 Q ss_pred HHHHHhHHHHHHHHHhcc--ceee-echHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEe-cccCChHHH Q lcl|Aclame:pro 306 NWLRTRQSVSDIVKQFSV--SGIL-MDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFN-TPLSGLDAL 381 (695) Q Consensus 306 ~~~~~~~~~~~l~~~~~~--~v~k-~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~ 381 (695) +++++.........-++. .+++ .+.. ....+... ...-.+.+.. ....+.++++++-++-+++ +++.++.+. T Consensus 205 a~~~~~s~~~~~~~~~a~p~~~i~G~~~~-~~~~~~~~-~~~~~~~~~~--~~~~i~~~~~~~~~~~q~~~~~~~~~~~~ 280 (434) T protein:vir:98 205 RVNLGILNRMAASRFSGFRQKWIKGHKFA-KRTDPATG-MTVVDQPFVP--SPSAVWASEGENTQFGQLDATDLSGFLKE 280 (434) T ss_pred HHHHHHHHHHHHHHHhcchhhhhcCCCcc-cccccccc-cchhhhhhhc--cccccccCCCCCceEEEecCcchHHHHHH Confidence 999997765554443333 3332 1111 11111110 0011111111 1223344443334444443 344556666 Q ss_pred HHHHHHHHHhhhcCCceeeeccCcccccCcchH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCC--CceeE Q lcl|Aclame:pro 382 QAQAQEQMSAVSHIPLIKLLGITPTGLNASSEG---EIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVD--PSIKW 456 (695) Q Consensus 382 ~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~---D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~--~d~~~ 456 (695) +....+++|+.+++|...|-|.+ =|+||+. -....-..++.+| ..++..|++++.++..-. |..+ .++.+ T Consensus 281 l~~~i~~~~~~~~~p~~~~~~~~---~n~Sg~Al~~~~~~l~~k~~~k~-~~f~~~l~~~~rl~~~~~-g~~~~~~~~~v 355 (434) T protein:vir:98 281 HASDVRDMLTISQTPTYLYATDL---VNISADTIGALDILHVAKVREHI-ASFSEGLESVLALAAAQA-GVPEDYTEAEV 355 (434) T ss_pred HHHHHHHHhcccCCCHHHhcccc---CChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CCChhheeeeE Confidence 77779999999999988886532 1456663 2334444455544 457889999888776543 4332 25889 Q ss_pred EeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 457 QWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAE 536 (695) Q Consensus 457 ~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (695) .|.+....+..+.++...+. ...| ++....+..+. +... ........... ........ . T Consensus 356 ~w~~~~~~s~~~~ada~~kl-------~~~g-~~~e~~~~~lg------~~~~-e~~r~~~e~~~-~~~~~~~~----~- 414 (434) T protein:vir:98 356 RWANPAHVTMAVKADAATKL-------KSIG-YPLDVIAEELD------ESPA-RVRRIVAGAAS-QALLAASL----L- 414 (434) T ss_pred EecCCCCCCHHHHHHHHHHH-------HhcC-CcHHHHHHhCC------CCHH-HHHHHHHHHHH-HHHHHHhh----h- Confidence 99999999888876655443 3333 23333322221 1110 00000000000 00000000 0 Q ss_pred hcccccccccCCCccchhhhhh Q lcl|Aclame:pro 537 GGDTGAPGGARAGATAPPTVAN 558 (695) Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~ 558 (695) ...... .............. T Consensus 415 ~~~~~~--~~g~~~~~~~~~dg 434 (434) T protein:vir:98 415 PAPGAP--SAGNVPDSGGAVDG 434 (434) T ss_pred ccCCCC--CCCCCCcccCCCCC Confidence 000000 00000000000000 No 102 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=98.90 E-value=4.5e-09 Score=66.33 Aligned_cols=437 Identities=10% Similarity=0.016 Sum_probs=174.1 Q ss_pred cccCCC--CcccccccccccccccccchhhhhhhccCCCCchHHHHHHHh--ChhhhhHhhcchH--HH-----hhCCc- Q lcl|Aclame:pro 74 EVDVSN--YTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQ--LPEYRAMHEVLAD--EC-----IRTWG- 141 (695) Q Consensus 74 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~--~~~~r~~v~~~a~--d~-----tR~~~- 141 (695) .+..+- -++.....-. ....+..+. ....-|..+..|+. |.+...-...+.+ ++ .-||- T Consensus 1 ~~~~p~~~l~~~~~~~~~--------~~~l~~~~~-~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~n~~~ 71 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYL--------ETKVFPKMN-TECERLDDFEAWTKNGQEVPDLATRHKNKEREVLQQLSRKPWMG 71 (479) T ss_pred CccCCcccCChhHHHHHH--------HHHHHHHHH-HHhHHHHHHHHHHhcCCcccccccccCChhHHHHHHHhhcCcHH Confidence 000000 0000000000 000000000 01112223322321 2211110011111 11 11342 Q ss_pred eeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCcc Q lcl|Aclame:pro 142 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRP 221 (695) Q Consensus 142 ~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~ 221 (695) .||+...+-..-.||+.. +.+..+.+.+.|++-++.....++.+.+-.||.+++++.-..+. .+ T Consensus 72 ~iVd~~~~~l~~~gf~~~-------d~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~------~d--- 135 (479) T protein:vir:99 72 LMVNSFAQQLIVDGYRKT-------GTNENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISP------LD--- 135 (479) T ss_pred HHHHHHHhhcccccccCC-------CchhhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCC------cC--- Confidence 233332222222334322 12223345666666667788888888888999988876532111 00 Q ss_pred ccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc----e-------EE---chhh-EEEec-C-----Cc Q lcl|Aclame:pro 222 YTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG----T-------EV---HATR-LHTIV-S-----RP 280 (695) Q Consensus 222 ~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~----~-------~i---H~SR-li~~~-~-----~~ 280 (695) ..|. ..|++++|.++.+. | +|+.... .+ .|.+.. . .+ +... -..+. . .. T Consensus 136 ---~~g~-~~i~~~~p~~~~~i-y--dd~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~ 205 (479) T protein:vir:99 136 ---GTTV-ARIKCIDPRDAFAI-W--EDPYWDE--WP-KYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGH 205 (479) T ss_pred ---CCCc-eEEEEechhheEEE-e--cCCcccc--ee-eEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCC Confidence 0111 23667777777653 2 1222111 01 111110 0 00 0000 00000 0 00 Q ss_pred chhh---hhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 281 VGDM---LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRN 357 (695) Q Consensus 281 ~p~~---~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~ 357 (695) +|-. -.+.-..+|.|.++.+.+.+.+++++.......+..++...+.+-+...-....... ..+. ....+ T Consensus 206 vPvv~f~n~~~~~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~-----~~~~--~~~~~ 278 (479) T protein:vir:99 206 IPFVRYVNVMDLRGVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEGANADQ-----EKMR--FAQES 278 (479) T ss_pred cceEEeecCCCcCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCcccccccch-----hccc--ccccc Confidence 1110 011112479999999999999999887766555544444333322211100000000 0011 12233 Q ss_pred eEEEEcCCceeEEEe-cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHH--HhhhhhHH Q lcl|Aclame:pro 358 ILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAY--QRNALQQL 434 (695) Q Consensus 358 ~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~--Qe~~l~p~ 434 (695) +++..+++-++-+++ .++....+.+.....+||+.+++|.. .||.+ | |+||+.=...+...+... .+..+++. T Consensus 279 i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~-~~g~~--~-n~Sg~Al~~~~~~l~~ka~~~~~~f~~a 354 (479) T protein:vir:99 279 MLISQNEKASFGAIPAAPLDGLLNAYKESLLEFLALAQLPPH-IAGQI--V-NVAADALAAGTRQTMQKLFEKQATWKAS 354 (479) T ss_pred ceeecCCCceEEEecccchHHHHHHHHHHHHHHhccCCCCHH-Hcccc--c-chHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 455544445555553 44556667777778899999999986 56853 2 577774433343333322 34567899 Q ss_pred HHHHHHHHHHHhcCCCC---CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 435 MNDVIVMIQLSLFGAVD---PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 435 l~~l~~~l~~s~~g~~~---~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) |++++.+++.-..+..+ -++.+.|.+...++..+.++ +..+++.+|.++.......+...... . T Consensus 355 l~~~~~l~~~~~~~~~~~~~~~i~~~w~~~~~~s~~~~ad-------~~~kl~~ag~is~et~l~~l~gv~~~------~ 421 (479) T protein:vir:99 355 HNQTMRLVNKIEGRTEEATDLDFTITWQDVTIQSLAQFAD-------AWAKMVESLKIPAEGVWDMIPNLDQS------T 421 (479) T ss_pred HHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHH-------HHHHHHhcCCCCHHHHHHhcCCCCHH------H Confidence 99999887665544332 25788999888888877654 44445556677776665544211110 0 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcCCe Q lcl|Aclame:pro 512 ANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGK 587 (695) Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 587 (695) ........... ................ .................. ....... +++.|- T Consensus 422 ~e~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~-----------~~~~~~ 479 (479) T protein:vir:99 422 VNGWKEIYDRE-GDFGKYMRKLQNGPDP-AEQRGGPNGATNMQQANN-----KTGEPAS-----------LNKSGA 479 (479) T ss_pred HHHHHHHHHHH-HHHHHHHHHHhcccCc-ccccCCCCCCCCCCCCCC-----CCcchhc-----------cCCCCC Confidence 00000000000 0000000000000000 000000000000000000 0000000 000000 No 103 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=98.88 E-value=3.4e-09 Score=67.03 Aligned_cols=378 Identities=10% Similarity=0.009 Sum_probs=153.5 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..+..+..... ....+.....++.+..-..+.++..+.++|+++|+++-.-=+++... T Consensus 1 Mgl~d~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~ 59 (395) T protein:vir:96 1 MGILDFFSFKKS---------------------GTLSDDDSGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRIKAP 59 (395) T ss_pred CcchhhhcCCCC---------------------ccccccccccchhhhcchhhhhhHHHHHHHHHHHHhhccceeEEEeC Confidence 222221111000 00000000011111112233467778889999999976654444321 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) .. ....+......|...=...--...|.+.+.+.. ++|-+++++.- +... .|.+ T Consensus 60 ~~--------------~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~--~~~~--~~~~------- 114 (395) T protein:vir:96 60 EK--------------LTENQKDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIP--GKGI--YVAD------- 114 (395) T ss_pred Cc--------------cccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEc--CCce--ecCC------- Confidence 10 001111122222221112223344444444444 46777766542 2110 0110 Q ss_pred CcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHH--- Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMP--- 302 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~--- 302 (695) .+... ..+.|..+. .....+ |.+ .+.+.++.|+||.....+... .+.++++..-+ T Consensus 115 --~~~~~-----~~~~~~~~~--~v~~~~------~~~-~~~~~~~dvih~k~~~~~~~~------~~~~~~~~~~~~~~ 172 (395) T protein:vir:96 115 --AFTQD-----KKLSGNKFK--VSRVQG------QTY-EKIFTFDQVIYLKNDNSDLML------KVESLWEEYGELLG 172 (395) T ss_pred --ccccc-----cccccceee--eeeecc------cee-eeEeccCceEEecccCCcccc------ccccccchHHHHHH Confidence 00000 001111110 000001 111 245778889988754322111 12222221111 Q ss_pred HHHHHHHHhHHHHHHHHHhccceeeechHHhh-cchHHHHHHHHHHHH-HHhcCCcee-EEEEcCCceeEEEecccCCh- Q lcl|Aclame:pro 303 YIDNWLRTRQSVSDIVKQFSVSGILMDLAQAL-MPGANVDLSMRAELI-NRYRDNRNI-LFLDKATEEFFQFNTPLSGL- 378 (695) Q Consensus 303 ~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l-~~~~~~~l~~r~~~~-~~~~~n~~~-~~ld~~~e~~~~~~~~lsgl- 378 (695) .......... ..................-.+ .....+...+.++.+ ....++.+. +++++ +-+|+.++.+..+. T Consensus 173 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-g~~~~~l~~~~~d~q 250 (395) T protein:vir:96 173 HVINNQKIAN-QIRFTMTPPKDKVRERAQENSDGGRQPKSDKDFFKRTIEKIRTESVVGIPVTA-NTNYEEYGSKNTGSV 250 (395) T ss_pred HHHHHHHHHH-HHHHHhhhcccccccceeeccCchhhHHHHHHHHHHHHHHhhcCCcceEEccC-CceeEecccChhhhh Confidence 1111111111 111111111010000000111 111122333333333 233444443 34553 56788877654432 Q ss_pred -------HHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC-- Q lcl|Aclame:pro 379 -------DALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA-- 449 (695) Q Consensus 379 -------~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~-- 449 (695) .++.....++||.+-|||..+|-| -.++.|.....||... |.|.+..+-+.+-+..+.. T Consensus 251 ~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~~-----~~sn~e~~~~~f~~~~-------L~P~~~~ie~~l~~~Ll~~~e 318 (395) T protein:vir:96 251 KSYVDDIKKLKDQYMAEFAEMLGIPISLLHG-----DIADNQKNYELLLEGP-------IESLITNIVDGLEYAIFDKSE 318 (395) T ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCHHHhcC-----CCccHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCChhh Confidence 222334567899999999998832 1234454566676643 7888877776665554432 Q ss_pred CCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 450 VDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLT 529 (695) Q Consensus 450 ~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (695) ...++.|.|+.|...+.++++ +...+++..|+++++|+|..+...+..+.... ................. T Consensus 319 ~~~~~~f~~~~l~~~d~~~~~-------~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~gD---~~~~~~N~~~~~~~gge 388 (395) T protein:vir:96 319 TLEGSFIKVTGLKNYDLFSIS-------SQADKLISSGFVFIDEVREEIGLPELPDGLGK---VLYMTKNYESVLERGGE 388 (395) T ss_pred hcCceeEeecchhccCHHHHH-------HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc---eeeecccceechhccCC Confidence 234577888888888777764 45566778899999999988765553221100 00000000000000000 Q ss_pred hhhhhhh Q lcl|Aclame:pro 530 YVQRLAE 536 (695) Q Consensus 530 ~~~~~~~ 536 (695) .....+. T Consensus 389 ~~~~~~~ 395 (395) T protein:vir:96 389 VDEEVET 395 (395) T ss_pred CCCCCCC Confidence 0000000 No 104 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=98.86 E-value=2.5e-08 Score=62.30 Aligned_cols=454 Identities=9% Similarity=-0.005 Sum_probs=203.3 Q ss_pred cCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHH Q lcl|Aclame:pro 37 TAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTL 116 (695) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~ 116 (695) |.+|..-. |-..++ ......+. -++.... .....+.....+.+.. +... . .-+-=... T Consensus 1 ~~~~~~~~--------------~~~~~~--~~~~~~~~--~~a~~~~-~~~~~w~~~~~s~~~~-i~~~-~-~~lr~RaR 58 (530) T protein:vir:38 1 MKIPSLVG--------------PDGKTS--LREYAGYH--GGGGGFG-GQLRGWNPPSESADAA-LLPN-Y-SRGNARAD 58 (530) T ss_pred Cccceeec--------------Cccccc--hHHHhhhh--cccCCCC-CcccccccCCCCHHHH-HHHH-H-HHHHHHHH Confidence 21111100 000111 11111100 0000000 0111111111111111 0000 0 00000123 Q ss_pred HHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhh--------------c Q lcl|Aclame:pro 117 VLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL--------------R 182 (695) Q Consensus 117 a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l--------------~ 182 (695) .+++.|++++.+|+......+=.|++....+....+. + ..+.+.+..++|+++|++. . T Consensus 59 dl~rNn~~a~~av~~~~~nvVG~Gi~~~~~p~~~~l~--~------~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~ 130 (530) T protein:vir:38 59 DLVRNNGYAANAVQLHQDHIVGSFFRLSYRPSWRYLG--I------NEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRT 130 (530) T ss_pred HHHhcChHHHHHHHHHHHHhhCCCceeeeccchhhcC--C------CHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCC Confidence 4566799999999988888777777665544332221 1 1223444556667776531 2 Q ss_pred hHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccc---------c Q lcl|Aclame:pro 183 IRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVA---------D 253 (695) Q Consensus 183 ~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s---------~ 253 (695) +-+...-+++..-.-|-+++.+....++ .+.-| + .|.++++.+|.-. .+ .|.. - T Consensus 131 f~~~q~l~~r~~~~dGE~~~~~~~~~~~-g~~~~------------~-~lq~ie~d~l~~~-~~--~~~~~~i~~GIe~d 193 (530) T protein:vir:38 131 FTMMIREGVAMHAFNGELCVQATWDSDS-TRLFR------------T-QFKMVSPKRVSNP-NN--IGDTRNCRAGVKIN 193 (530) T ss_pred HHHHHHHHHHHHhhCCceEEEeeeccCC-CCccc------------e-EEEEechhhcCCC-CC--CCCCCeeEeeeEEC Confidence 3333444445333345555554432221 11111 1 3667777776421 11 1111 2 Q ss_pred ccCCceeEEEcc-----------------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHH Q lcl|Aclame:pro 254 DFYKPSTWWMIG-----------------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD 316 (695) Q Consensus 254 ~yg~P~~y~i~~-----------------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~ 316 (695) .+|+|..|+|.. +.|+..+|||+-...-|. +--|+|.+-+++..|.+++.-..+.-. T Consensus 194 ~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~~~r~g------Q~RGis~lapvl~~l~~l~~y~dael~ 267 (530) T protein:vir:38 194 DSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFEPMEDG------QTRGANAFYSVMEQMKMLDTLQNTQLQ 267 (530) T ss_pred CCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeeccccCCC------cccCCchHHHHHHHHHHHhHHHHHHHH Confidence 579999998841 235566777666544333 346999999999999988777654322 Q ss_pred --HHHHhccceeeechHH-----hhc-chHHH---HH----HHHHHHHHH--hcCCceeEEEEcCCceeEEEecc--cCC Q lcl|Aclame:pro 317 --IVKQFSVSGILMDLAQ-----ALM-PGANV---DL----SMRAELINR--YRDNRNILFLDKATEEFFQFNTP--LSG 377 (695) Q Consensus 317 --l~~~~~~~v~k~~~~~-----~l~-~~~~~---~l----~~r~~~~~~--~~~n~~~~~ld~~~e~~~~~~~~--lsg 377 (695) .+...-..++|.+... .+. .+... .+ ..+....+. ..-.-|++..-..+|+++.++.+ -++ T Consensus 268 ~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~ 347 (530) T protein:vir:38 268 SAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQDTDNG 347 (530) T ss_pred HHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccceeccCceeeecCCCCeeeeeCCCCCCCC Confidence 3333334455544321 111 11100 00 011110000 01123344433467889988866 468 Q ss_pred hHHHHHHHHHHHHhhhcCCceeeeccCccccc-CcchHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHHhcCCCCC Q lcl|Aclame:pro 378 LDALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGEIRVWYDYVRAYQRNALQQLMN----DVIVMIQLSLFGAVDP 452 (695) Q Consensus 378 l~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln-atge~D~~nyyd~i~~~Qe~~l~p~l~----~l~~~l~~s~~g~~~~ 452 (695) ..+.+..+...||+..|||...|.|- .++-| ||.-..+..+...++.+|...+.+.+. .+++..+++.-..+|. T Consensus 348 ~~~f~~~~lr~iaaglGi~ye~lt~D-~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~av~~G~i~~p~ 426 (530) T protein:vir:38 348 YSTFEQSLLRYIAAGLGVSYEQLSRN-YSQMSYSTARASANESWAYFMGRRKFVASRQACQMFLCWLEEAIVRRVVTLPS 426 (530) T ss_pred HHHHHHHHHHHHHhhcCCCHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCccCCC Confidence 99999999999999999999999994 44544 445557778889999999887655444 4444333332112222 Q ss_pred ----c--------eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 453 ----S--------IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPA 520 (695) Q Consensus 453 ----d--------~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~ 520 (695) + +...|.+.--+.-. -.|.+++....+.+|..+..++......+.............. ... T Consensus 427 ~~~~~~~~~~~a~~~~~w~~p~~~~iD-----P~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~--~~~ 499 (530) T protein:vir:38 427 KARFSFQEARTAWGNANWIGSGRMAID-----GLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRESME--RRA 499 (530) T ss_pred CCCCCchhhHHhhhceeeecCCccccC-----hHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHH--HHH Confidence 1 12344333222211 1244677778888888888877655443332211111000000 000 Q ss_pred hhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccc Q lcl|Aclame:pro 521 DDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREA 568 (695) Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (695) ..... ...................... .... T Consensus 500 --------~Gl~~---~~~~~~~~~~~~~~~~~~~~d~------~~~a 530 (530) T protein:vir:38 500 --------AGLNP---PAWAAAAFEAGVKKSNEEEQDG------ARAA 530 (530) T ss_pred --------cCCCC---CCCcccccCCCCCCCCCCCCCC------CCCC Confidence 00000 0000000000000000000000 0000 No 105 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=98.84 E-value=2.9e-08 Score=61.87 Aligned_cols=443 Identities=11% Similarity=0.027 Sum_probs=166.4 Q ss_pred Ccccccccccccccccccchhhhhh-------hccCCCCchHHHHHHHh----------------------ChhhhhHhh Q lcl|Aclame:pro 80 YTPRERRAASYALDFNGTSMDALSF-------VTSSGFPGFPTLVLLAQ----------------------LPEYRAMHE 130 (695) Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~f~gy~~~a~~~~----------------------~~~~r~~v~ 130 (695) .|+-..+++.|...-.+.+.+-..+ .. .-...|..+..|+. ....++||| T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~~~-~~~~r~~~l~~YY~G~~~i~~~~~~~p~~~~~~~~v~n~~~~iVd 79 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQLV-DRTPRNLLRASFYDGKYAIRQIGNLIPPEYLRTATVLGWSAKAVD 79 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhccccchhccccccHHHHHHhhccCcHHHHHH Confidence 1222222333332222222111000 00 00112222222221 112344444 Q ss_pred cchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCC Q lcl|Aclame:pro 131 VLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDD 210 (695) Q Consensus 131 ~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~ 210 (695) +.++-+. -+||.+. .+++..+.+.+.|++=++.....++.+.+-.||.|++++..+.++ T Consensus 80 ~~a~rl~---------------~~Gf~~~------d~~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~ 138 (504) T protein:vir:99 80 TLARRCN---------------LESFVWP------DGDYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAG 138 (504) T ss_pred HHHhhhc---------------cceeeCC------CCChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCC Confidence 4443222 2344432 122334456777777777778888888888899999888765443 Q ss_pred ch--hccccCCccccccCcceEEEEEecchhccc--cc--eeccc----ccccccCCce-eEEEc--c-eEEchhhEEEe Q lcl|Aclame:pro 211 QI--MDTPLVPRPYTVPKGSFQGLRVVEPYWVTP--NN--YNSIN----PVADDFYKPS-TWWMI--G-TEVHATRLHTI 276 (695) Q Consensus 211 ~~--~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p--~~--~~~~d----p~s~~yg~P~-~y~i~--~-~~iH~SRli~~ 276 (695) .. .-+++ +|.. -+.++|+..=.+ .. ++ .| +..-.++.|. .|.+. + ......+.-+. T Consensus 139 ~~~~~I~~~--sP~~-------~~~iyD~~~~~~~~a~~~~~-~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 208 (504) T protein:vir:99 139 EPDSLIHVK--SAMQ-------ATGEWNSRRNAMDSLLSITS-RDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHK 208 (504) T ss_pred CceeEEEEe--ccce-------eEEEEeCCCCceeEEEEEEE-ecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCC Confidence 21 00111 1111 122222211000 00 00 01 1111122221 11111 1 01111111111 Q ss_pred cCCcchhh-hh-cccCCCCchHH-HHHHHHHHHHHHHhHHHHHHHHHhccceeeechH--Hhhc---chHHHHHHHHHHH Q lcl|Aclame:pro 277 VSRPVGDM-LK-PTYSFAGISMT-QLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLA--QALM---PGANVDLSMRAEL 348 (695) Q Consensus 277 ~~~~~p~~-~~-~~~~~~G~S~l-~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~--~~l~---~~~~~~l~~r~~~ 348 (695) -|.|+..+ .. .....+|.|.+ +.+++.+.+++++......-..-++.....+-+. ..+. +.....+..++.. T Consensus 209 ~gvPvV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~ 288 (504) T protein:vir:99 209 LGVPVEVLPYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNFRNKDGSMKPAWQIALAR 288 (504) T ss_pred CCcceEEecccccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCccccccccccccchhhhhhhh Confidence 12221111 00 01234688876 4677777777777655443333333222221111 1111 1111122222222 Q ss_pred HHHhcCCceeEEEEcCCceeEEEe-cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHH---HHHHHHHHH Q lcl|Aclame:pro 349 INRYRDNRNILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGE---IRVWYDYVR 424 (695) Q Consensus 349 ~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D---~~nyyd~i~ 424 (695) +..+-.+....+..+..-++.+++ +++.++-+.+.....+||+.++||..-| |.....=|+||+.= .......++ T Consensus 289 i~~~~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~l-G~~~~~n~sSa~Ai~~~~~~L~~ka~ 367 (504) T protein:vir:99 289 VFALPDDEDEPDAARARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESL-GFSNRANPTSADAYIASREDLIAEAE 367 (504) T ss_pred hhcCCCccccccccCccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHh-cccccccccHHHHHHHHHHHHHHHHH Confidence 222222222222222223344443 4456677788888999999999997655 54322224677743 233334444 Q ss_pred HHHhhhhhHHHHHHHHHHHHHhc--CCCCC---ceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhh-hhhhh Q lcl|Aclame:pro 425 AYQRNALQQLMNDVIVMIQLSLF--GAVDP---SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQ-VAARL 498 (695) Q Consensus 425 ~~Qe~~l~p~l~~l~~~l~~s~~--g~~~~---d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e-~r~~L 498 (695) .+| ..+...|++++.+.+.-.. +..++ .+.+.|.+....|..+.|+...|..++...+ +...+ ..+.+ T Consensus 368 ~k~-~~f~~~l~~~~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l-----~~~~~~l~~~l 441 (504) T protein:vir:99 368 GAT-DDWSPAFRRSMIRALAIKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEW-----LKETEVGLELL 441 (504) T ss_pred HHH-HHHHHHHHHHHHHHHHHhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhcccc-----ccchHHHHhhc Confidence 444 4578899998887654332 23333 3678899999999988877665554432211 11111 11111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEE Q lcl|Aclame:pro 499 NTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRA 577 (695) Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (695) ++............... ............... ............. ............+|.... T Consensus 442 ------g~~~~ei~r~~~e~~~~---~~~~~~~~l~~~~~~-~~~~~~~~~~~~~------e~a~~~~~~~~~~p~~~~ 504 (504) T protein:vir:99 442 ------GLTPQQAKRALAERRRA---SSVSIIEALNRRQQE-AATAGEDQDQGAG------EPPANEPPAALGRPTLVG 504 (504) T ss_pred ------CCCHHHHHHHHHHHHHH---hhHHHHHHHhcccCC-CCCCCCCCCcCCC------CCCCCCCCccCCCcccCC Confidence 11000000000000000 000000000000000 0000000000000 000000000011111111 No 106 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=98.83 E-value=3.2e-08 Score=61.70 Aligned_cols=411 Identities=9% Similarity=0.005 Sum_probs=188.6 Q ss_pred hhhhhcc-cccCCCCcccccccccccccccccch--hhhhhhccC-C-CCch-----HHHHHHH---------------- Q lcl|Aclame:pro 67 LRLARQF-EVDVSNYTPRERRAASYALDFNGTSM--DALSFVTSS-G-FPGF-----PTLVLLA---------------- 120 (695) Q Consensus 67 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~-f~gy-----~~~a~~~---------------- 120 (695) +...+-. ......-++...... ..-....+.+ ....+|.+- . ...+ +.+.-|. T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~-i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (474) T protein:vir:94 1 MTLYKLIDDIEAQGILPKHIEAL-IESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKL 79 (474) T ss_pred CchHHHHhhccccCCCHHHHHHH-HHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCccccc Confidence 0000000 000000010000000 0000000000 000111100 0 0000 0000000 Q ss_pred hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceE Q lcl|Aclame:pro 121 QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRA 200 (695) Q Consensus 121 ~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~ 200 (695) .+..++.||+..+.=+ +..+.++.....++.+++..+.|...+++-++.....++.+.+-.||.+ T Consensus 80 ~~n~~~~ivd~~~~yl---------------~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a 144 (474) T protein:vir:94 80 NNSFDSEIVDTRVGYL---------------HGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYG 144 (474) T ss_pred ccchHHHHHHhHhhhe---------------eccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeE Confidence 1333344444333222 2223333333344556666777888888878999999999999999999 Q ss_pred EEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc----ce-----EE-ch Q lcl|Aclame:pro 201 HPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI----GT-----EV-HA 270 (695) Q Consensus 201 ~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~----~~-----~i-H~ 270 (695) +.++.++.++.. .+.+++|.++.|..-+..+|. +. -.+|.+. ++ .+ .. T Consensus 145 ~~~~~~d~~~~~------------------~~~~i~p~~~~~v~d~~~~~~---~~-i~~~~~~~~~~~~~~~~~~~y~~ 202 (474) T protein:vir:94 145 ARLAYIDTNGDI------------------RIKNIDPYNVIFVGDNILEPT---YS-LRYFYEKDDDNGTDYVYAEFYDN 202 (474) T ss_pred EEEEEeCCCCee------------------EEEEEcccceEEEEcCCCceE---EE-EEEEEEeeCCCceEEEEEEEEcC Confidence 999887654421 234444444443211111111 00 0011110 00 00 12 Q ss_pred hhEEEecCCc----------------chhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhh Q lcl|Aclame:pro 271 TRLHTIVSRP----------------VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQAL 334 (695) Q Consensus 271 SRli~~~~~~----------------~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l 334 (695) .++..|.+.. +|-. .-.++.+|.|.++.+.+-+.+++.+....+..+..++..++.+.+.. + T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~-~ 280 (474) T protein:vir:94 203 AYYYVFRGEGIDALQEVGRYEHLFDYNPLF-GVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMG-M 280 (474) T ss_pred ceEEEEeecCCCcccccccccCCCCccceE-EecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCC-C Confidence 2222222211 1111 11356689999999999999999999988888887777766554321 1 Q ss_pred cchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcc Q lcl|Aclame:pro 335 MPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASS 412 (695) Q Consensus 335 ~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatg 412 (695) .. +.+ .. .+. .+++.+..++.+++.++ .+.++....++...+.|...+++|-.-.-+ .+| |.|| T Consensus 281 ~~---~~~-~~------~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~--~~~-n~Sg 346 (474) T protein:vir:94 281 SE---EMI-QE------TQK-SGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDE--FNG-NVPI 346 (474) T ss_pred Cc---hhh-hh------hhh-cceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccc--ccc-cchH Confidence 11 111 11 111 23444433455666664 555789999999999999999999653322 223 5677 Q ss_pred hHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHh--c--CCCC---CceeEEeccccccchhHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 413 EGEIRVWYDY--VRAYQRNALQQLMNDVIVMIQLSL--F--GAVD---PSIKWQWNALRELDDLEVAESRYKQAQSDVLY 483 (695) Q Consensus 413 e~D~~nyyd~--i~~~Qe~~l~p~l~~l~~~l~~s~--~--g~~~---~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~ 483 (695) +.=...|... -...++..++..|++++.++..-. - +..+ .++.+.|++....++.+.+++..+.+ T Consensus 347 ~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~------ 420 (474) T protein:vir:94 347 IGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLK------ 420 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHh------ Confidence 7433334433 234466778999999888876421 1 1112 36789999999999999888766542 Q ss_pred hhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhh Q lcl|Aclame:pro 484 VQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVA 557 (695) Q Consensus 484 ~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (695) |.++...+...+....+.. ......................+. ...... ..... T Consensus 421 ---g~iS~et~~~~l~~v~d~~-------~E~eri~~E~~e~~~~~~~~~~~~--------~~~~~~--~~~s~ 474 (474) T protein:vir:94 421 ---GQVSERTRLGQSQLVDDVD-------YELDEMEKESLEFNDKLPDIDEGD--------ANDKSQ--NNQSE 474 (474) T ss_pred ---ccCchHHHHHhCCCCCCHH-------HHHHHHHHHHHHHHhhcccccCCC--------cCCCCc--cccCC Confidence 5666666655544221110 000000000000000000000000 000000 00000 No 107 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=98.83 E-value=3.2e-08 Score=61.70 Aligned_cols=411 Identities=9% Similarity=0.005 Sum_probs=188.6 Q ss_pred hhhhhcc-cccCCCCcccccccccccccccccch--hhhhhhccC-C-CCch-----HHHHHHH---------------- Q lcl|Aclame:pro 67 LRLARQF-EVDVSNYTPRERRAASYALDFNGTSM--DALSFVTSS-G-FPGF-----PTLVLLA---------------- 120 (695) Q Consensus 67 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~-f~gy-----~~~a~~~---------------- 120 (695) +...+-. ......-++...... ..-....+.+ ....+|.+- . ...+ +.+.-|. T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~-i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (474) T protein:vir:10 1 MTLYKLIDDIEAQGILPKHIEAL-IESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKL 79 (474) T ss_pred CchHHHHhhccccCCCHHHHHHH-HHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCccccc Confidence 0000000 000000010000000 0000000000 000111100 0 0000 0000000 Q ss_pred hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceE Q lcl|Aclame:pro 121 QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRA 200 (695) Q Consensus 121 ~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~ 200 (695) .+..++.||+..+.=+ +..+.++.....++.+++..+.|...+++-++.....++.+.+-.||.+ T Consensus 80 ~~n~~~~ivd~~~~yl---------------~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a 144 (474) T protein:vir:10 80 NNSFDSEIVDTRVGYL---------------HGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYG 144 (474) T ss_pred ccchHHHHHHhHhhhe---------------eccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeE Confidence 1333344444333222 2223333333344556666777888888878999999999999999999 Q ss_pred EEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc----ce-----EE-ch Q lcl|Aclame:pro 201 HPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI----GT-----EV-HA 270 (695) Q Consensus 201 ~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~----~~-----~i-H~ 270 (695) +.++.++.++.. .+.+++|.++.|..-+..+|. +. -.+|.+. ++ .+ .. T Consensus 145 ~~~~~~d~~~~~------------------~~~~i~p~~~~~v~d~~~~~~---~~-i~~~~~~~~~~~~~~~~~~~y~~ 202 (474) T protein:vir:10 145 ARLAYIDTNGDI------------------RIKNIDPYNVIFVGDNILEPT---YS-LRYFYEKDDDNGTDYVYAEFYDN 202 (474) T ss_pred EEEEEeCCCCee------------------EEEEEcccceEEEEcCCCceE---EE-EEEEEEeeCCCceEEEEEEEEcC Confidence 999887654421 234444444443211111111 00 0011110 00 00 12 Q ss_pred hhEEEecCCc----------------chhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhh Q lcl|Aclame:pro 271 TRLHTIVSRP----------------VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQAL 334 (695) Q Consensus 271 SRli~~~~~~----------------~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l 334 (695) .++..|.+.. +|-. .-.++.+|.|.++.+.+-+.+++.+....+..+..++..++.+.+.. + T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~-~ 280 (474) T protein:vir:10 203 AYYYVFRGEGIDALQEVGRYEHLFDYNPLF-GVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMG-M 280 (474) T ss_pred ceEEEEeecCCCcccccccccCCCCccceE-EecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCC-C Confidence 2222222211 1111 11356689999999999999999999988888887777766554321 1 Q ss_pred cchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcc Q lcl|Aclame:pro 335 MPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASS 412 (695) Q Consensus 335 ~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatg 412 (695) .. +.+ .. .+. .+++.+..++.+++.++ .+.++....++...+.|...+++|-.-.-+ .+| |.|| T Consensus 281 ~~---~~~-~~------~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~--~~~-n~Sg 346 (474) T protein:vir:10 281 SE---EMI-QE------TQK-SGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDE--FNG-NVPI 346 (474) T ss_pred Cc---hhh-hh------hhh-cceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCccccccc--ccc-cchH Confidence 11 111 11 111 23444433455666664 555789999999999999999999653322 223 5677 Q ss_pred hHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHh--c--CCCC---CceeEEeccccccchhHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 413 EGEIRVWYDY--VRAYQRNALQQLMNDVIVMIQLSL--F--GAVD---PSIKWQWNALRELDDLEVAESRYKQAQSDVLY 483 (695) Q Consensus 413 e~D~~nyyd~--i~~~Qe~~l~p~l~~l~~~l~~s~--~--g~~~---~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~ 483 (695) +.=...|... -...++..++..|++++.++..-. - +..+ .++.+.|++....++.+.+++..+.+ T Consensus 347 ~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~------ 420 (474) T protein:vir:10 347 IGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLK------ 420 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHh------ Confidence 7433334433 234466778999999888876421 1 1112 36789999999999999888766542 Q ss_pred hhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhh Q lcl|Aclame:pro 484 VQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVA 557 (695) Q Consensus 484 ~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (695) |.++...+...+....+.. ......................+. ...... ..... T Consensus 421 ---g~iS~et~~~~l~~v~d~~-------~E~eri~~E~~e~~~~~~~~~~~~--------~~~~~~--~~~s~ 474 (474) T protein:vir:10 421 ---GQVSERTRLGQSQLVDDVD-------YELDEMEKESLEFNDKLPDIDEGD--------ANDKSQ--NNQSE 474 (474) T ss_pred ---ccCchHHHHHhCCCCCCHH-------HHHHHHHHHHHHHHhhcccccCCC--------cCCCCc--cccCC Confidence 5666666655544221110 000000000000000000000000 000000 00000 No 108 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=98.81 E-value=1.1e-08 Score=64.27 Aligned_cols=451 Identities=12% Similarity=0.037 Sum_probs=203.9 Q ss_pred HHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCC Q lcl|Aclame:pro 31 ATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGF 110 (695) Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 110 (695) --++..+.+...|..-.||.+ +-...+ ++.+. .+ . ........ ..+.+. .+.+. . .- T Consensus 1 mn~~dr~i~~~sP~~~~~R~~-----------ar~~~~---~y~aa---~~-~-r~~~~~~~-~~s~~~-~~~~~-~-~~ 57 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLR-----------SRAVIQ---AYEAV---KT-T-RTHKARRE-NRTADQ-LSQYG-A-VS 57 (502) T ss_pred CchHhhHHhhcChHHHHHHHh-----------hHHHHh---hcccc---Cc-c-cccCCCCC-CCChHH-HHHHH-H-HH Confidence 111222222222221111110 000111 11111 00 0 00000010 001110 01110 0 00 Q ss_pred CchHHHHHHHhChhhhhHhhcchHHHhh-CCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh--------- Q lcl|Aclame:pro 111 PGFPTLVLLAQLPEYRAMHEVLADECIR-TWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER--------- 180 (695) Q Consensus 111 ~gy~~~a~~~~~~~~r~~v~~~a~d~tR-~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~--------- 180 (695) +-=....+++.||.++.+|+....-.+= .|+.+...+..+ ..+.+.+..++|+++|++ T Consensus 58 lr~RaRdl~rNn~~a~~av~~~~~nvVG~ggi~~~~~~~~~------------~~~~~~~~~~~ie~~w~~Wa~~~D~~g 125 (502) T protein:vir:79 58 LREQARYLDNNHDLVIGVFDKLEERVVGKNGIIVEPHPVLR------------NGAIARDLAAEIRTRWSEWSVSPEVTG 125 (502) T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhhccCCceeeeeccCCC------------ChhHHHHHHHHHHHHHHHhhcCcCccc Confidence 0001234566788888888887766663 244443332111 112344556677777763 Q ss_pred -hchHHHHHHHHHhcCccceEEEEEEEcCCCc-hhccccCCccccccCcceEEEEEecchhccccceeccc-----cccc Q lcl|Aclame:pro 181 -LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQ-IMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSIN-----PVAD 253 (695) Q Consensus 181 -l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~-~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~d-----p~s~ 253 (695) +.+-....-+++..-.-|-+++.+....+.. .-..|+ .+ .|.++++.+|.- ..+..+ ..-. T Consensus 126 ~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~~~~~g~~~----------~l-~lq~iepd~l~~-~~~~~~~i~~GVe~d 193 (502) T protein:vir:79 126 QFTRPMLERLMLRTWLRDGEVFAQMVSGRINSLTPSAGV----------HF-WLEALEPDFIPM-TSDESNRLNQGVFVD 193 (502) T ss_pred cCCHHHHHHHHHHHHHhCCceEEEEeecccCccCCCccc----------ce-EEEEecchhcCC-CCCCCCeeEeeeEEC Confidence 3344444445553333566666654432211 001111 11 356777777732 121100 0012 Q ss_pred ccCCceeEEEcc-----------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH--HHHHH Q lcl|Aclame:pro 254 DFYKPSTWWMIG-----------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS--DIVKQ 320 (695) Q Consensus 254 ~yg~P~~y~i~~-----------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~--~l~~~ 320 (695) .+|+|..|+|.. +.|..++|+|+-...-|. +.-|+|.+-+++..+.+++.-..+.- ..+.. T Consensus 194 ~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~g------Q~RGis~lapvl~~l~~l~~~~dael~~a~i~A 267 (502) T protein:vir:79 194 DWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLH------QMRGTSLLSGVLIRLSALKEYEDSELTAARIAA 267 (502) T ss_pred CCCceEEEEEeecCCCCCcccceeEechhheEEeecccCCc------cccCCchHHHHHHHHHHHhHHHHHHHHHHHHhh Confidence 679999999852 478999988766543333 44699999999999998887665332 22333 Q ss_pred hccceeeechHHhhcc--hHHHHHHHHHHHHHHhcCCceeEE--EEcCCceeEEEecc--cCChHHHHHHHHHHHHhhhc Q lcl|Aclame:pro 321 FSVSGILMDLAQALMP--GANVDLSMRAELINRYRDNRNILF--LDKATEEFFQFNTP--LSGLDALQAQAQEQMSAVSH 394 (695) Q Consensus 321 ~~~~v~k~~~~~~l~~--~~~~~l~~r~~~~~~~~~n~~~~~--ld~~~e~~~~~~~~--lsgl~~~~~~~~~~iaaas~ 394 (695) .-..++|.+....... .+...-..... + ..|+++ + ..+++++.++.+ -++..+....+...||+..| T Consensus 268 ~~~~fi~~~~~~~~~~~~~~~~~~~~~~~----l--~pG~i~~~L-~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglG 340 (502) T protein:vir:79 268 ALGMYIRKGDGQSYEPDGNGSKENERELT----I--QPGIIYDDL-KPGEEIGMVKSDRPNPNLETFRNGQLRAVAAGSR 340 (502) T ss_pred hheeeeecCCCcccccccCCCCCcccccc----c--cCCcccccc-CCCceeeeeCCCCCCCCHHHHHHHHHHHHHhhcC Confidence 3344555543222111 00000000011 1 235432 4 357889998854 46899999999999999999 Q ss_pred CCceeeeccCccccc-CcchHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhcCCC--CC------ceeEEeccc Q lcl|Aclame:pro 395 IPLIKLLGITPTGLN-ASSEGEIRVWYDYVRAYQRNALQ----QLMNDVIVMIQLSLFGAV--DP------SIKWQWNAL 461 (695) Q Consensus 395 iP~t~L~G~sp~Gln-atge~D~~nyyd~i~~~Qe~~l~----p~l~~l~~~l~~s~~g~~--~~------d~~~~f~pL 461 (695) ||.-.|.|.- ++ | ||.-..+..+...++..|+..+. |+.+.+++..+++ |.+ |. -....|.+- T Consensus 341 i~ye~lt~D~-s~-nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~--G~i~~p~~~~~~~~~~~~W~~p 416 (502) T protein:vir:79 341 LSFSSTARNY-NG-TYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVAS--GVIRLPRDLDRSSLYTAVYSGP 416 (502) T ss_pred CCHHHHhccc-cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCCCchhhcceeeecC Confidence 9999999974 44 3 44455677788999999986544 4444444444443 443 21 123444332 Q ss_pred cc--cchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcc Q lcl|Aclame:pro 462 RE--LDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGD 539 (695) Q Consensus 462 ~~--~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (695) .- .+. .|.+++....+.+|..+..++......+.............. ... ....... ...... T Consensus 417 ~~~~iDP-------~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v~~q~a~e~~~--~~~-~Gl~~~~-----~~~~~~ 481 (502) T protein:vir:79 417 VMPWIDP-------VKEAEAWKIQIRGGAATESDWVRAGGRNPDDVKRRRKAEIDE--NRK-LDLVFDT-----DPASDK 481 (502) T ss_pred CccccCh-------HHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHH--HHH-cCCCCCC-----CCCCCC Confidence 21 222 244667778888888888876665544433222111100000 000 0000000 000000 Q ss_pred cccccccCCCccchhhhhhhhhccccccccc Q lcl|Aclame:pro 540 TGAPGGARAGATAPPTVANVNANVKPREAGA 570 (695) Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (695) .......... . .......... T Consensus 482 ----~~~~~~~~~~-e-----~~~~~~~~e~ 502 (502) T protein:vir:79 482 ----GGSSAATKRQ-E-----PQHTDDQSEE 502 (502) T ss_pred ----CCCCCCCCCC-C-----CCCCCCCCCC Confidence 0000000000 0 0000000000 No 109 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=98.80 E-value=2e-09 Score=68.29 Aligned_cols=361 Identities=12% Similarity=0.065 Sum_probs=162.5 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..|+.+.- ..... +..+... .+ .+.|- ....+...+.++|+++|++.-.-=+++.-. T Consensus 1 M~if~~~~~--------~~~~~------~~~~~~~-~~----~~~~~---~~~~~~~~v~~~v~~Ia~~iA~lp~~~~~~ 58 (378) T protein:vir:94 1 MNLFGKVVS--------FSRGK------LNNDTQR-VT----AWQNE---AVEYTSAFVTNIHNKIANEITKVEFNHVKY 58 (378) T ss_pred CchhHHhHh--------hhhcc------cccCcce-ee----eeecc---hhhhhhHHHHHHHHHHHHhHhhCceeeeee Confidence 222221110 00000 0000000 00 01111 112244567889999999976543322111 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) ..++..... .....+......|..+=...--...|.+.+.+.. |.|-++++.+..+. T Consensus 59 ~~~~~~~~~------~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~---------------- 116 (378) T protein:vir:94 59 KKSDVGSDT------LISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSE---------------- 116 (378) T ss_pred ccccccccc------ccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCC---------------- Confidence 111000000 0000111222222222122223445555444444 46778877543211 Q ss_pred CcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHH Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYID 305 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~ 305 (695) .|.+.++. |...++.+.++.|+++.. +.+...+.+.++.....+. T Consensus 117 ~g~~~~~~---------------------------~~~~~~~~~~~dvih~~~--------~~~~~~~~~~~~~~~~~~~ 161 (378) T protein:vir:94 117 TGELLDLL---------------------------FANDKKEYKPEELVRLTS--------PFYINEDTSILDNALASIQ 161 (378) T ss_pred CCcEEEEE---------------------------EecCcEEechhceeeecC--------cCCcccchhHHHHHHHHHH Confidence 12332221 112345677788888763 1233345677776665544 Q ss_pred HHHHHhHHHHHHHHHhcc-ceeeechHHhhcchHHHHHHHHH----HHHHHhcCCceeEEEEcCCceeEEEecccCChH- Q lcl|Aclame:pro 306 NWLRTRQSVSDIVKQFSV-SGILMDLAQALMPGANVDLSMRA----ELINRYRDNRNILFLDKATEEFFQFNTPLSGLD- 379 (695) Q Consensus 306 ~~~~~~~~~~~l~~~~~~-~v~k~~~~~~l~~~~~~~l~~r~----~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~- 379 (695) ..-+. .+. .+++++ ..+..+...++.+++ +-.....++.+++++++ +.+|+.++.+...++ T Consensus 162 ~~~~~----------~~~~g~l~~~--~~l~~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~-g~~~~~l~~~~~~~~~ 228 (378) T protein:vir:94 162 TKLEQ----------GKLRGLLKIN--AFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDN-KTEIVELKKDYSVLNK 228 (378) T ss_pred HHHhh----------CCcccceeeC--CcCCHHHHHHHHHHHHHHHHHhhcccccccceeccC-CceEEEccCChHHhhH Confidence 33221 111 234443 233333333333333 22222334456778874 789999987765433 Q ss_pred HHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcC-------CC-- Q lcl|Aclame:pro 380 ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFG-------AV-- 450 (695) Q Consensus 380 ~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g-------~~-- 450 (695) +-+.....+||.+-|||..+|.|.. .|....+||.. -|.|.+.++-+-+-+..+- .. T Consensus 229 ~~~~~~~~~Ia~~fgvPp~~l~g~~-------~e~~~~~f~~~-------tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~ 294 (378) T protein:vir:94 229 DEIDLIKSELLTGYFMNENILLGTA-------TQEQQIYFYNS-------TIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) T ss_pred HHHHHHHHHHHHHhCCCHHHhcCCc-------hHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhHhhhhhhhc Confidence 2335557789999999998885521 23344556554 3778777776655443321 11 Q ss_pred -CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 451 -DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLT 529 (695) Q Consensus 451 -~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (695) ..++.|.+..|...+.+++ ++...++++.|+++.+|+|..+...+..+.................... T Consensus 295 ~~~~~~f~~~~l~~~d~~~~-------~e~~~~~~~~G~~t~NE~R~~~g~~p~~ggd~~~~~~n~~~~~~~~~~~---- 363 (378) T protein:vir:94 295 YYERIIVDNQLFKFATLKEL-------IDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQ---- 363 (378) T ss_pred ccceeEeecchhhhcCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccchhcchhcc---- Confidence 1245677788888888776 4566678888999999999987766654322111100000000000000 Q ss_pred hhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 530 YVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) ........ ....... T Consensus 364 -----~~~~~~~~----~~e~~n~ 378 (378) T protein:vir:94 364 -----GNRKDVTS----TDETNNQ 378 (378) T ss_pred -----cccCCCCC----CCCCCCC Confidence 00000000 0000000 No 110 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=98.76 E-value=6e-08 Score=60.17 Aligned_cols=520 Identities=10% Similarity=-0.005 Sum_probs=214.0 Q ss_pred HHHHHHHHHhcCCCCcccchhhccccccc-----------ccccccccchhhhhhh-cc-------------c-ccCCCC Q lcl|Aclame:pro 27 LAAAATIATATAAQPVPADMGRRGALNAL-----------DAAPVAEPSPSLRLAR-QF-------------E-VDVSNY 80 (695) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~-------------~-~~~~~~ 80 (695) ....+.|.+-+- +-+-...|.+|+.+ +.-|++.|-.+.+... |. . ..-... T Consensus 1 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~i~ 77 (945) T protein:vir:10 1 MKSLENIIKGFI---VNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKII 77 (945) T ss_pred CchhhhHhhhhe---eccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeehhhhHHHhhccc Confidence 222233333211 11111223333211 1123333322222110 00 0 000000 Q ss_pred cc------cccccccccccccccchhhh-hhhccCCCCchHHHHH-HHhChhhhhHhhcchHHHhhCCceeeccchhhhh Q lcl|Aclame:pro 81 TP------RERRAASYALDFNGTSMDAL-SFVTSSGFPGFPTLVL-LAQLPEYRAMHEVLADECIRTWGEAIGGTKEKAD 152 (695) Q Consensus 81 ~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~gy~~~a~-~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~ 152 (695) +| .. ....+ .+.+-+...+ ++.....|.+=..... ..++..+..+|++.|++.-.-=+++.-... + T Consensus 78 ~pfkkk~~~~-~~d~f--~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~e-d-- 151 (945) T protein:vir:10 78 VPYNHQEPPF-KFNLF--EYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIE-D-- 151 (945) T ss_pred ccccccccch-hhhhh--hccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEecc-c-- Confidence 00 00 00000 0000000000 0000111211112222 236788899999999987544333211100 0 Q ss_pred ccCccccccccccCCHHHHHHHH----HHHHhhchHHHHHHHHH-hcCccceEEEEEEEcCCCchhccccCCccccccCc Q lcl|Aclame:pro 153 TSGLAAGGNAASTSDGDQLKQIN----DEIERLRIRDAVRTTVI-HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKG 227 (695) Q Consensus 153 ~~g~~~~~~~~~~~~~~~~~~i~----~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g 227 (695) |..... .....+...+..+. ..+.....|+.|.+.+. .--++|-+++++.-+. .| T Consensus 152 --G~~~~~-~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~-----------------~G 211 (945) T protein:vir:10 152 --KHVNYY-LKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDE-----------------QG 211 (945) T ss_pred --Cccccc-ccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECC-----------------CC Confidence 000000 00000111111111 11222345565665554 4456888887765321 23 Q ss_pred ceEEEEEecchhccccceecccccccccCCceeEE--Ecc---eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHH Q lcl|Aclame:pro 228 SFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW--MIG---TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMP 302 (695) Q Consensus 228 ~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~--i~~---~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~ 302 (695) .+.+|.++++.++++.... | -+.+..|. +.| ..++++.+|++.-.+-++.. ..+.|.|-++.+.+ T Consensus 212 ~ii~L~pLdPs~Vti~~dd--D-----G~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~---~~GyGlSPIeaa~~ 281 (945) T protein:vir:10 212 NLVAITPVDGTTIKPILSE--D-----TGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVY---MYGYSLPPIEILYK 281 (945) T ss_pred cEEEEEEECCcceEEEEcC--C-----CcEEEEEEEecCCceEEEecCCceEEEeccCCCCcc---cccCCchHHHHHHH Confidence 4668899999988774321 1 11222232 233 24677777655544333321 12359999999999 Q ss_pred HHHHHHHHhHHHHHHHHHhcc---ceeeechH--------HhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEE Q lcl|Aclame:pro 303 YIDNWLRTRQSVSDIVKQFSV---SGILMDLA--------QALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQF 371 (695) Q Consensus 303 ~l~~~~~~~~~~~~l~~~~~~---~v~k~~~~--------~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~ 371 (695) .+.....+....+....+-+. .+++++.. ..++.+..+.+.+.++......++.+.++++ ++.+|+++ T Consensus 282 aI~~alAaek~aar~FskNGa~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLd-eGmef~pL 360 (945) T protein:vir:10 282 VILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG-GKFTWIDF 360 (945) T ss_pred HHHHHHHHHHHHHHHHHhCCCccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceecC-CCceEEEc Confidence 998888888877777654322 35555422 3455555556666666555444444455666 46789988 Q ss_pred ecccC--ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcC- Q lcl|Aclame:pro 372 NTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFG- 448 (695) Q Consensus 372 ~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g- 448 (695) +.+.. .+-+......++||++-|||...| |...++-.++.|....+||... |.|.+..+-+.+-+..+- T Consensus 361 s~s~~DaQfLEsrkfs~eeIArAFGVPP~lL-G~~e~st~SNiEqq~~~Fv~~t-------L~Pil~~IEqeLNrkLl~~ 432 (945) T protein:vir:10 361 KGKRRDMQFKELAEFVARKICAVYQVSPQDV-GILEGSNKATAEVMASLTKAKG-------LEPLMATISKGFDEVVSEF 432 (945) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHc-ccCCCCCcchHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccc Confidence 87654 345667777889999999998888 5433222244455566676432 445555444433221110 Q ss_pred CCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 449 AVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVL 528 (695) Q Consensus 449 ~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (695) ....++.|.|+.+..++.+++ +++...++..|+++++|+|..+...+..+.... ........... T Consensus 433 ~eg~~i~fdFd~ldl~D~ksr-------aEal~kli~sGiLTiNEvRe~lGLpPIeGGD~l------li~~nn~~P~d-- 497 (945) T protein:vir:10 433 RNEKDIKLWFKEDDLEKERDW-------WNIIQGQLNTGFRSINEARMEKGLEPVPWGDVP------FSGLRNWKPED-- 497 (945) T ss_pred ccCceeEEEecchhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee------eeccccccccc-- Confidence 113468899998887776554 456677888999999999887644332211000 00000000000 Q ss_pred hhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcCCeEEEEEeCCCceeCCcceeC-- Q lcl|Aclame:pro 529 TYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKVLLMKRPAGDWGLPAGKVE-- 606 (695) Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~g~W~lPGG~vE-- 606 (695) ....... ....+. . --...++ + =.-+||.-| T Consensus 498 -------------------------~~~ka~~-------ga~p~q-~-----aq~~~dq------p---~~kGGe~dEns 530 (945) T protein:vir:10 498 -------------------------EQAKAQQ-------GAMPPQ-L-----AQAMADQ------P---SQQGGGVDENS 530 (945) T ss_pred -------------------------ccccccc-------CCCCcc-c-----ccCCCCC------C---CCCCCCCCCCC Confidence 0000000 000000 0 0000000 0 000000000 Q ss_pred --CCCCHHHH--HHHHHHHhcCceEeEEEEecCcccEEEEEEEEEeeCCccccCchhhhhccCCHHHHhhhcCcchHHHH Q lcl|Aclame:pro 607 --GNETPEEA--ARRETREETGYDHDGELVPLGKFDGFFHAFVAHLEPFDVELNDEHTAFDWFNPDELPHPLHRDTAAIV 682 (695) Q Consensus 607 --~gEs~~~a--a~REv~EEtGl~v~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~l~~~~~~~i 682 (695) ++|+-... ..+++.+.+- ....+.+..+- |+... +. - T Consensus 531 ~~psE~kda~~e~~~~l~~~~~----------------------------~~a~e~i~~~~-----e~~~~---~~---~ 571 (945) T protein:vir:10 531 SVPSEQKNAGLEVLRNLFKSLD----------------------------ANASENLKQVI-----ELTND---DN---Y 571 (945) T ss_pred CCCCcccchHHHHHHHHHHHHH----------------------------HHHHHHHHHHH-----hhcCC---Cc---h Confidence 00100000 0011111100 00000011000 11000 00 0 Q ss_pred HHHHHHHHHhccC Q lcl|Aclame:pro 683 DAACKALDRLERA 695 (695) Q Consensus 683 ~~~~~~l~~~~~~ 695 (695) -...+.|.++-|+ T Consensus 572 ~~~~~~~~~~~~~ 584 (945) T protein:vir:10 572 LKEKELLTRVLKS 584 (945) T ss_pred hHHHHHHHHHHHH Confidence 0011112222222 No 111 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=98.74 E-value=4.5e-08 Score=60.86 Aligned_cols=434 Identities=11% Similarity=-0.028 Sum_probs=196.2 Q ss_pred ccccccccccccch--hhhh-hhcccc-cCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhh Q lcl|Aclame:pro 52 LNALDAAPVAEPSP--SLRL-ARQFEV-DVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRA 127 (695) Q Consensus 52 ~~~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~ 127 (695) ++-.++... +|.+ .... ...+.+ ..+....+ .. ..+.+.. +... . .-+-=....+++.|+.++. T Consensus 1 m~~~~~~~~-a~~~~~~~~~~~~~y~aa~~~~~~~~------~~--~~s~d~~-~~~~-~-~~lr~RaRdl~rNn~~a~~ 68 (495) T protein:vir:10 1 MNMTPSGYQ-SLASGLLVPVGASAYEGASGGHRWQD------IG--DYGPDTA-VASG-I-QTLRARSHHNVRNNPWATN 68 (495) T ss_pred CCccccccc-ccchhhhhHHHhhhhhccccCcccCC------CC--CCChhHH-HHHH-H-HHHHHHHHHHHhcChHHHH Confidence 222221100 0000 0000 001110 00100000 00 0000000 0000 0 0000012234556888888 Q ss_pred HhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhh----------chHHHHHHHHHhcCcc Q lcl|Aclame:pro 128 MHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL----------RIRDAVRTTVIHDQAF 197 (695) Q Consensus 128 ~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l----------~~~~~~~~a~~~~Rl~ 197 (695) +|+......+=.|++....+ .+++.-+.|+++|++. .+-+....+++..-.- T Consensus 69 av~~~~~~vVG~Gi~p~~~~------------------~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~d 130 (495) T protein:vir:10 69 AVATWVAAAVGNGLTPRWRM------------------KEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINS 130 (495) T ss_pred HHHHHHHhhcCCCcccccCC------------------chHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhC Confidence 88877666654455443222 2345556677776543 2333344455533334 Q ss_pred ceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcc-ccceecccccc---------cccCCceeEEEcc-- Q lcl|Aclame:pro 198 GRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVT-PNNYNSINPVA---------DDFYKPSTWWMIG-- 265 (695) Q Consensus 198 G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~-p~~~~~~dp~s---------~~yg~P~~y~i~~-- 265 (695) |-+++.+....+.....-|+ .|.++++.+|. |.... .+|.+ ..+|+|..|+|.. T Consensus 131 GE~f~~~~~~~~~~g~~~~~-------------~lqliepd~l~~~~~~~-~~~~g~~i~~GIe~d~~Gr~vaY~i~~~h 196 (495) T protein:vir:10 131 GEAFVIKKPRPLSEGLSVPL-------------QLQIIEPDMLASDIPDE-TLPSGGYVKGGIRFSNGGKRKAYCFYRNH 196 (495) T ss_pred CceEEEEeecccCCCCccce-------------EEEEechhhcCCCCCCC-CCCCCCEEEeceEECCCCceEEEEEeecC Confidence 66665554422111111122 36778888874 32211 11211 2579999999841 Q ss_pred -------------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHH--HHHHHHHhccceeeech Q lcl|Aclame:pro 266 -------------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQS--VSDIVKQFSVSGILMDL 330 (695) Q Consensus 266 -------------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~--~~~l~~~~~~~v~k~~~ 330 (695) +.|-.++|+|+-. +-| .+.-|+|.+..+. .|.+++.-..+ .+..+...-..++|.+. T Consensus 197 pgd~~~~~~~~~~~rvpA~~vlH~f~-~r~------gQ~RGis~la~i~-~l~~l~~y~dael~~a~i~A~~~~fi~~~~ 268 (495) T protein:vir:10 197 PAESSLIGDPVDTVWIKAEHVLHVTV-LTV------RSDAGAPWFQLLL-RLNELDQYEDAELVRKKTAALFAAFIQEAT 268 (495) T ss_pred CCcccccccccceeeechhheEeccc-cCC------CcccCcchhHHHH-HHHHhhHHHHHHHHHHHHhhhheeeeecCC Confidence 3578888887753 223 3446899887655 47766665553 22333444444555543 Q ss_pred HHhhcc-----hHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecc--cCChHHHHHHHHHHHHhhhcCCceeeecc Q lcl|Aclame:pro 331 AQALMP-----GANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTP--LSGLDALQAQAQEQMSAVSHIPLIKLLGI 403 (695) Q Consensus 331 ~~~l~~-----~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~--lsgl~~~~~~~~~~iaaas~iP~t~L~G~ 403 (695) ...... +....-..+.. .-.-|++..-..+++++.++.+ -++..+....+...||+..|||.-.|.|. T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~-----~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD 343 (495) T protein:vir:10 269 ADSTGGPTIGQPKRSKGGKRIT-----GLNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGD 343 (495) T ss_pred CccccccccCccccccCcccce-----ecCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc Confidence 222111 11110001111 1123444433467899999865 46899999999999999999999999995 Q ss_pred Cccccc-CcchHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHhcCCCCCc-------eeEEeccccccchhHHH Q lcl|Aclame:pro 404 TPTGLN-ASSEGEIRVWYDYVRAYQRNA-----LQQLMNDVIVMIQLSLFGAVDPS-------IKWQWNALRELDDLEVA 470 (695) Q Consensus 404 sp~Gln-atge~D~~nyyd~i~~~Qe~~-----l~p~l~~l~~~l~~s~~g~~~~d-------~~~~f~pL~~~se~e~A 470 (695) .++-| ||.-..+..+...+++.|.+. ++|+.+.+++..+++.--.+|+. ....|.+..-..-. T Consensus 344 -~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vD--- 419 (495) T protein:vir:10 344 -LRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVD--- 419 (495) T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchhhhHhhhccccccCCccccC--- Confidence 44544 344446677888888888754 35666666666555422223332 12344332211111 Q ss_pred HHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCc Q lcl|Aclame:pro 471 ESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGA 550 (695) Q Consensus 471 ei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (695) -.|.+++....+.+|..+..++......+.......... +...... .............++ ..... T Consensus 420 --P~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~--e~~~~~~-~Gl~~~~~p~~~~~~---------~~~~~ 485 (495) T protein:vir:10 420 --PLKKHLADLGDVRAGFAPISDKQAERGYDMEELFDMISD--ANQLIDE-YDLRLDSDPRYVNGS---------GAEQK 485 (495) T ss_pred --hHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHH--HHHHHHH-cCCCCCCCCCcCCCc---------cCCCC Confidence 124467778888889888887766544433222111111 0000000 000000000000000 00000 Q ss_pred cchhhhhhhh Q lcl|Aclame:pro 551 TAPPTVANVN 560 (695) Q Consensus 551 ~~~~~~~~~~ 560 (695) .......... T Consensus 486 ~~~~~~~~~e 495 (495) T protein:vir:10 486 SVMEAALNNE 495 (495) T ss_pred CCCCCCCCCC Confidence 0000000000 No 112 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=98.74 E-value=1.9e-08 Score=62.95 Aligned_cols=431 Identities=13% Similarity=0.045 Sum_probs=171.6 Q ss_pred CCcccccccccccccccccch-hhh-hhhccCC---CCc---hHHHHHHH-hChhhhhHhhcchHHHhhCCceeeccchh Q lcl|Aclame:pro 79 NYTPRERRAASYALDFNGTSM-DAL-SFVTSSG---FPG---FPTLVLLA-QLPEYRAMHEVLADECIRTWGEAIGGTKE 149 (695) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~---f~g---y~~~a~~~-~~~~~r~~v~~~a~d~tR~~~~i~~~~~~ 149 (695) +.|+...-..-..-......+ ..+ .+|.+-. ..| .+..+.++ .+.+.++|||+.++-++= T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~----------- 69 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDI----------- 69 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHhhhhhhcchHHHHHHHHHhhhcc----------- Confidence 111111000000000000000 000 1111100 000 00111111 122345555555543332 Q ss_pred hhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcce Q lcl|Aclame:pro 150 KADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSF 229 (695) Q Consensus 150 d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l 229 (695) .||++ +.+.+..+.|...|++-++.....++.+.+-.||.|+.++..... ... + ..| . T Consensus 70 ----~g~~~------~~d~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~-~~~------d----~~g-~ 127 (480) T protein:vir:78 70 ----EGFRI------SEDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDV-ESG------D----PAG-I 127 (480) T ss_pred ----Cceec------CCCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCcc-ccC------C----CCC-e Confidence 23332 123445567778888878889999999999999999888764211 000 0 011 1 Q ss_pred EEEEEecchhccccceeccccccc-----------ccCCceeEEE--cceEEchh----hEE--EecCCc-------chh Q lcl|Aclame:pro 230 QGLRVVEPYWVTPNNYNSINPVAD-----------DFYKPSTWWM--IGTEVHAT----RLH--TIVSRP-------VGD 283 (695) Q Consensus 230 ~~l~v~d~~~i~p~~~~~~dp~s~-----------~yg~P~~y~i--~~~~iH~S----Rli--~~~~~~-------~p~ 283 (695) ..|.+++|.++.|. |+..+...+ +.+.+.++.+ .+..++.. ... ...+.+ +|- T Consensus 128 ~~i~~~~p~~~~~~-~D~~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 206 (480) T protein:vir:78 128 PLIRVESPLYMYAE-LDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPV 206 (480) T ss_pred eEEEEEcccceEEE-EcCCCccceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcce Confidence 23555666665542 111111111 1222222111 01111000 000 000000 110 Q ss_pred h---h-hcccCCCCchHHHH-HHHHHHHHHHHhHHHHHHHHHhccceeeechHH--hhcchHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 284 M---L-KPTYSFAGISMTQL-AMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQ--ALMPGANVDLSMRAELINRYRDNR 356 (695) Q Consensus 284 ~---~-~~~~~~~G~S~l~~-~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~--~l~~~~~~~l~~r~~~~~~~~~n~ 356 (695) . - .....++|.|.++. +.+.+.+++++.......+..++...+.+.+.. ....+... ..+..+ +. T Consensus 207 v~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~------~~~~~~--~~ 278 (480) T protein:vir:78 207 VPLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGEN------TTLDIY--YG 278 (480) T ss_pred EEeecccccCCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcCCcccccccccc------chhhhh--hh Confidence 0 0 01123689999875 778888888887776665554443322221111 11111111 111111 11 Q ss_pred eeEEEEcCCceeEEEec-ccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHH--HHhhhhhH Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNT-PLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRA--YQRNALQQ 433 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~-~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~--~Qe~~l~p 433 (695) .+..+++++-+|.+++. ++....+.+.....++++.+++|...|-| +... ++||+.-...+...+.. .++..+.+ T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~-~~~n-~~Sg~Alk~~~~~l~~ka~~~~~~f~~ 356 (480) T protein:vir:78 279 RILTLASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSS-SSEN-PASAEAIIATDSRIVKMAERKGRIFGG 356 (480) T ss_pred hhccCCCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCChHHhcc-ccCc-chHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 12333333334444432 34455667777788899999999998844 3222 25777433334333332 34466788 Q ss_pred HHHHHHHHHHHHhcCCCCC---ceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 434 LMNDVIVMIQLSLFGAVDP---SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 434 ~l~~l~~~l~~s~~g~~~~---d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) .|.+++.+++.-..+..+. .+.+.|.+...++..+.++...+..+.. .+.++...+...+..... . T Consensus 357 ~l~~~~~l~~~~~g~~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g-----~~~~s~et~~~~lg~~~d------~ 425 (480) T protein:vir:78 357 AWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANG-----QGPIPKEQARIDLGYTAT------Q 425 (480) T ss_pred HHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhc-----cccCCHHHHHhcCCCCHh------H Confidence 9999988877555443333 4788999999899888766554433221 124444444433322111 0 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhccc-ccccccCCCccchhhhhhhhhccccccccccC Q lcl|Aclame:pro 511 DANDDPGVPADDDIDGVLTYVQRLAEGGDT-GAPGGARAGATAPPTVANVNANVKPREAGAQD 572 (695) Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (695) .............................. ......... ........ ......+ T Consensus 426 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~~~ 480 (480) T protein:vir:78 426 REQMRDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKT-ETQTSPSG-------FNRTKTR 480 (480) T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCC-ccccccCC-------CCcccCC Confidence 000000000000000000000000000000 000000000 00000000 0000000 No 113 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=98.74 E-value=7.1e-08 Score=59.78 Aligned_cols=406 Identities=8% Similarity=0.000 Sum_probs=180.1 Q ss_pred ccccccc--chhhhhhhcccccCCCCcccccccccccccccccchhhh-hhhc--cCCCCchHHHHHHH----------- Q lcl|Aclame:pro 57 AAPVAEP--SPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVT--SSGFPGFPTLVLLA----------- 120 (695) Q Consensus 57 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~f~gy~~~a~~~----------- 120 (695) .+..-.| .+....+-. .+++.+-+ ....+ .+.. .....-|..+..|+ T Consensus 1 ~~~~~~~~~~~~~~e~~~-~~~~~~~~----------------~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~ 63 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVE-QIKPKYET----------------QEEMILRLVREHKENIDNITMGERYYNHHPDILDAPP 63 (478) T ss_pred CccccCCCCchhHHHHHH-HHhhccCC----------------cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcccc Confidence 1111111 000000000 00000000 00000 0000 00000111122222 Q ss_pred -----------------hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhch Q lcl|Aclame:pro 121 -----------------QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRI 183 (695) Q Consensus 121 -----------------~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~ 183 (695) .+.+.+.||+..+.=++.+...+ . ..+.+..+.|...++ -++ T Consensus 64 ~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~---------------~-----~~~d~~~~~l~~~~~-n~~ 122 (478) T protein:vir:10 64 KRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPVTF---------------G-----VDNDKALKQIQHTLN-HKW 122 (478) T ss_pred ccccccccccccccceeccchHHHHHHHHHhhhccCCeee---------------e-----cCChHHHHHHHHHHh-cCH Confidence 12333344444333333222222 1 223445556666654 478 Q ss_pred HHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE Q lcl|Aclame:pro 184 RDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM 263 (695) Q Consensus 184 ~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i 263 (695) ...+.++.+.+-.||.+++++..+.++. + .+.+++|.++.|..-+ .....+.++ -.+|.+ T Consensus 123 ~~~~~~~~~~~~~~G~~~~~~~~d~~g~-----------------~-~~~~~~p~~~~~i~d~-~~~~~~~~~-v~~~~~ 182 (478) T protein:vir:10 123 DDKLVDILTAASNKGIEWVQPYVDEEGE-----------------F-KTFRVPAEQAVPIWTN-KERDELQAF-IRVYEL 182 (478) T ss_pred HHHHHHHHHHHHhcCeEEEEEEecCCCe-----------------e-EEEEEcccceEEEEcC-CCCCceEEE-EEEEEe Confidence 8899999999999999998887754432 1 1334455544442110 011111111 011222 Q ss_pred cce---EEc-hhhEEEec-----------------------C------CcchhhhhcccCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 264 IGT---EVH-ATRLHTIV-----------------------S------RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRT 310 (695) Q Consensus 264 ~~~---~iH-~SRli~~~-----------------------~------~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~ 310 (695) .+. .++ ..++..|. + ..+|-. .-.++.+|.|.++.+.+.+.+++.+ T Consensus 183 ~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv-~~~n~~~g~sd~~~v~~liDa~~~~ 261 (478) T protein:vir:10 183 DGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFI-PFKNNPQEVSDLFMYKTIIDALDKR 261 (478) T ss_pred cCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceE-EeccCCCCCCcHHHHHHHHHHHHHH Confidence 111 000 11111110 0 011111 1124567999999999999999999 Q ss_pred hHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEE---cCCceeEEEecccCChHHHHHHHHH Q lcl|Aclame:pro 311 RQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLD---KATEEFFQFNTPLSGLDALQAQAQE 387 (695) Q Consensus 311 ~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld---~~~e~~~~~~~~lsgl~~~~~~~~~ 387 (695) ....+..+..++...+.+.+...- . ..+....+. . .+++.++ +++-++-+.+.+.+++...++...+ T Consensus 262 ~S~~~~~~~~~~~p~~~~~g~~~~-~--~~~~~~~~~------~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 331 (478) T protein:vir:10 262 LSDTQNTFDESVELIYILKGYEGE-D--MKDFMHNLK------Y-YKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRD 331 (478) T ss_pred HHHHHHHHHHhhCceeeeecCCcc-c--cchhhhhhh------h-cceEEecCCCCCcceEEeecCChHHHHHHHHHHHH Confidence 998888888777776665443211 1 111111111 1 1233342 2233344556778899999999999 Q ss_pred HHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEecccccc Q lcl|Aclame:pro 388 QMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALREL 464 (695) Q Consensus 388 ~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~ 464 (695) .|...+++|-.-.-+ -+| |.||+.=...|..... ..++..+...|++++.++..-..+.. ..++.+.|++-... T Consensus 332 ~i~~~s~~p~~~~~~--~~~-n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~~~~~~i~i~f~~~~p~ 408 (478) T protein:vir:10 332 YIIEFGQGVDFQQDK--FGN-SPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVKVQDIEITFNFNVMV 408 (478) T ss_pred HHHHHhCccccCccc--ccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEecCCCCC Confidence 999999999643322 123 5677743333333322 44566789999999888765443333 24688999998888 Q ss_pred chhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccc Q lcl|Aclame:pro 465 DDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPG 544 (695) Q Consensus 465 se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (695) ++.+.|++..+. .|.++...+...+....+. . .+.......... ..... .......... T Consensus 409 d~~e~a~~~~kl---------~g~iS~et~~~~l~~v~D~------~-~E~~ri~~E~~~--~~~~~---~~~~~~~~~~ 467 (478) T protein:vir:10 409 NELENSQIAMNS---------TGLLSKETILSNHAWVEDP------V-AEMERIEQENIE--LNQQL---PDIEEGLNGE 467 (478) T ss_pred CHHHHHHHHHHH---------hCCCChHHHHHhCCCCCCH------H-HHHHHHHHHHHH--HHhhc---cccccccCCC Confidence 888887755443 4566666655554321110 0 000000000000 00000 0000000000 Q ss_pred ccCCCccchhh Q lcl|Aclame:pro 545 GARAGATAPPT 555 (695) Q Consensus 545 ~~~~~~~~~~~ 555 (695) ........... T Consensus 468 ~~~~~~~~~~~ 478 (478) T protein:vir:10 468 QQRQSENNQPE 478 (478) T ss_pred CCCCCCCCCCC Confidence 00000000000 No 114 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=98.71 E-value=3.2e-08 Score=61.68 Aligned_cols=353 Identities=16% Similarity=0.107 Sum_probs=160.0 Q ss_pred ccccccccchhhhhhhccC---CCCchHHHH----HHH-hChhhhhHhhcchHHHhhCCceeeccchhhhhccCcccccc Q lcl|Aclame:pro 90 YALDFNGTSMDALSFVTSS---GFPGFPTLV----LLA-QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGN 161 (695) Q Consensus 90 ~~~~~~~~~~~~~~~~~~~---~f~gy~~~a----~~~-~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~ 161 (695) ++. +.+++.....+|.+. .++|...-. .+. --...+++||+.++=+.=+|+ +.. T Consensus 1 l~~-~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vds~a~rl~~~Gf---------------~~~-- 62 (410) T protein:vir:95 1 MNL-YQSRVNLRYKHYAMQHYEAPTGITIPAHIRAKYQAVLGWAAKGVDSLADRLIFRAF---------------AND-- 62 (410) T ss_pred CCc-chhhHHHHHHHhcCCCCccccchhccHHHHhHHHhhcchhHHHHHHhHhhhccccc---------------cCC-- Confidence 110 112222222333322 123332111 121 123347778877753332332 211 Q ss_pred ccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcc Q lcl|Aclame:pro 162 AASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVT 241 (695) Q Consensus 162 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~ 241 (695) | +.+.+.|.+-++.....++.+-+-.||.|++++.-+.++. |+ |++++|.+++ T Consensus 63 -----d----~~l~~i~~~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~----~~--------------i~~~sP~~~~ 115 (410) T protein:vir:95 63 -----D----FNVTEIFDRNNPDIFFDSAILSALIGSCSFVYISKGEDDE----VR--------------LQVIESSNAT 115 (410) T ss_pred -----C----chHHHHHhhcChHHHHHHHHHHHHHhCceeEEEecCCCCc----eE--------------EEEEcccceE Confidence 1 1255567777777777888887878999998887544432 21 3333333332 Q ss_pred ccceecccccc------------cccCCcee---------EEEc--c-e-EE-chhh---EEEecCCcchhhhhcccCCC Q lcl|Aclame:pro 242 PNNYNSINPVA------------DDFYKPST---------WWMI--G-T-EV-HATR---LHTIVSRPVGDMLKPTYSFA 292 (695) Q Consensus 242 p~~~~~~dp~s------------~~yg~P~~---------y~i~--~-~-~i-H~SR---li~~~~~~~p~~~~~~~~~~ 292 (695) .. | ||.. .+.+++.. |++. + . .+ |+-- ++.|..++ .....+ T Consensus 116 ~i-~---Dp~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~------~l~~~~ 185 (410) T protein:vir:95 116 GV-I---DPITGLLVEGYAVLARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRP------DAVRPF 185 (410) T ss_pred EE-E---eCCCCceEEEEEEEEecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccc------cCCccC Confidence 11 1 1110 01112211 1111 0 0 00 1111 12222111 113457 Q ss_pred CchHH-HHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCC----ce Q lcl|Aclame:pro 293 GISMT-QLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKAT----EE 367 (695) Q Consensus 293 G~S~l-~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~----e~ 367 (695) |.|-+ +.++..+.++.++..-..--..-++.....+-+... .+.....+...+ ..+..+.+.+ -+ T Consensus 186 G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~-d~~~~~~~~~~~---------~~i~~~~~~~~~~~~~ 255 (410) T protein:vir:95 186 GRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILGLDP-DAEPMEKWKATV---------SSLLTISSSDKGVKPS 255 (410) T ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeeccCC-CCCcCchhhhhh---------hhheeccCCCCCCcce Confidence 99965 778888888888876544433333333222222211 011111111111 1234443322 13 Q ss_pred eEEEe-cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc-CcchH---HHHHHHHHHHHHHhhhhhHHHHHHHHHH Q lcl|Aclame:pro 368 FFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEG---EIRVWYDYVRAYQRNALQQLMNDVIVMI 442 (695) Q Consensus 368 ~~~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln-atge~---D~~nyyd~i~~~Qe~~l~p~l~~l~~~l 442 (695) |.+++ +++.++-+.+.....+||+.+++|..-|-|.+ -| +|++. ........++.+|+ .+...++++..+. T Consensus 256 v~q~~~~~l~~~~~~l~~l~~~~a~~s~lP~~~lg~~~---~NpsSa~Al~a~~~~L~~ka~~k~~-~fg~~l~~~~rla 331 (410) T protein:vir:95 256 VGQFTTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVS---DNPSSVEAIKASHENLRLAGRKAQR-SLGAGLLNVAYVA 331 (410) T ss_pred EEecCCCChHHHHHHHHHHHHHHhhhcCCCHHHhcccc---CchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH Confidence 44443 46667778888889999999999999886643 24 56653 23444455666554 4788899988875 Q ss_pred HHHhcC--CCCC---ceeEEecccccc---chhHHHHHHHHHHHhhhhhhhh--hcchhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 443 QLSLFG--AVDP---SIKWQWNALREL---DDLEVAESRYKQAQSDVLYVQE--QVIRPDQVAARLNTEPDGPYAGKLDA 512 (695) Q Consensus 443 ~~s~~g--~~~~---d~~~~f~pL~~~---se~e~Aei~~~~a~~~~~~~~~--g~i~~~e~r~~L~~~~~~~~~~~~~~ 512 (695) +.-..+ ..+. ...+.|.|+..+ |..+.|+- ..++.++ |..+.....+.+........ T Consensus 332 ~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa-------~~Kl~~a~~g~~~~~~~~~~lg~~~~~~~------ 398 (410) T protein:vir:95 332 ACLRDEFRYTRSQFVRTAVKWEPLFEADANTMTMIGDG-------VVKLNQALPGYINAETIRDLTGIAGDMSA------ 398 (410) T ss_pred HHHhcCCCCcccccceeeEEeeecCCcchhhHHHHHHH-------HHHHHHhccCCccHHHHHHhcCCChHHHH------ Confidence 433222 2333 357789866544 44555444 4444444 33333444433332211000 Q ss_pred hhhhhhhhhhhhhhh Q lcl|Aclame:pro 513 NDDPGVPADDDIDGV 527 (695) Q Consensus 513 ~~~~~~~~~~~~~~~ 527 (695) .. .......... T Consensus 399 ~~---~~~e~~~~g~ 410 (410) T protein:vir:95 399 KP---VVSEGGSNGE 410 (410) T ss_pred HH---HHHHHHhCCC Confidence 00 0000000000 No 115 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=98.69 E-value=1.1e-07 Score=58.84 Aligned_cols=445 Identities=11% Similarity=0.002 Sum_probs=202.1 Q ss_pred cCCCCcccchhhcccccccccccccc----cchhhhhhhcccccCCCCccccccccccc--ccccccchhhhhhhccCCC Q lcl|Aclame:pro 37 TAAQPVPADMGRRGALNALDAAPVAE----PSPSLRLARQFEVDVSNYTPRERRAASYA--LDFNGTSMDALSFVTSSGF 110 (695) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f 110 (695) |+..+.. .+..+.+...+ ..+.......+.+... + .....+. ....+.+.. +.... .- T Consensus 1 ~~r~~~~--------~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~----~-r~~~~w~~~~~~~s~~~~-i~~~~--~~ 64 (505) T protein:vir:96 1 MKRAEKK--------PSLAQRMVNWAWYRYVEPQKNAARAFEAARR----D-RLGKAWLRRASRLSADEE-IYADL--AS 64 (505) T ss_pred CCCCccc--------cchhhcccchhhhhhHHHHHHhhhhcccccC----C-CccccccCCCCCCChHHH-HHHHH--HH Confidence 1111110 01111111100 0111111111111000 0 0111110 000011110 00000 00 Q ss_pred CchHHHHHHHhChhhhhHhhcchHHHhh-CCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhh-------- Q lcl|Aclame:pro 111 PGFPTLVLLAQLPEYRAMHEVLADECIR-TWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL-------- 181 (695) Q Consensus 111 ~gy~~~a~~~~~~~~r~~v~~~a~d~tR-~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l-------- 181 (695) +-=....+++.|++++.+|+......+= .|+.+...+... ..+.+++..++|+++|++. T Consensus 65 lr~RaRdL~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~------------~~~~~~~~~~~ie~~w~~Wa~~~~~D~ 132 (505) T protein:vir:96 65 LVQRAREQSINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRR------------NGKPDDRANTLIEGNWQQWIKKGNCDV 132 (505) T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhcCCCcceeeecCCcc------------cccccHHHHHHHHHHHHHhcCCcCcce Confidence 0001234566799999999988888774 577665443211 1234566777788877653 Q ss_pred ----chHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccce-eccc------- Q lcl|Aclame:pro 182 ----RIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNY-NSIN------- 249 (695) Q Consensus 182 ----~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~-~~~d------- 249 (695) .+-+....+++..-.-|-+++.+.. +++ ...| + .|.++++..|.-... ...| T Consensus 133 ~g~~~f~~lq~l~~r~~~~dGE~f~~~~~-~~~--~~~~------------~-~lqliepd~l~~~~n~~~~~~~~i~~G 196 (505) T protein:vir:96 133 TGRYHFVTLLHLWMETLARDGEVLVREHR-GYP--NKWG------------Y-ALQILECDRLDLNYNADLQNGNRIRMS 196 (505) T ss_pred eccCCHHHHHHHHHHHHhhCCceEEEEee-cCC--CCcc------------e-EEEEechhhcCCCCCcccCCcCeEEec Confidence 1222334444433334555554433 222 1111 2 256777777642210 0000 Q ss_pred ccccccCCceeEEEcc-----------------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhH Q lcl|Aclame:pro 250 PVADDFYKPSTWWMIG-----------------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQ 312 (695) Q Consensus 250 p~s~~yg~P~~y~i~~-----------------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~ 312 (695) ..--.+|+|..|+|.. +.|-.++|+|+-...-| .+.-|+|.|-+++..|.+++.-.. T Consensus 197 Ie~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa~~vlH~f~~~r~------gQ~RGis~lapvl~~l~~l~~y~d 270 (505) T protein:vir:96 197 IELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPADEIIHTFVPWRP------HQNRGIPWTHASMVELHHIGEYRK 270 (505) T ss_pred eEECCCCceEEEEEeecCCCccccccccccccccccCHhHhhhhhcccCC------ccccCcchHHHHHHHHHHHhHHHH Confidence 0112579999999842 23555666655433323 345699999999999998877666 Q ss_pred HHHH--HHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEecc--cCChHHHHHHHHHH Q lcl|Aclame:pro 313 SVSD--IVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTP--LSGLDALQAQAQEQ 388 (695) Q Consensus 313 ~~~~--l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~--lsgl~~~~~~~~~~ 388 (695) +--. .+...-..++|.+.... .......-.... ..+ .-|++..-..+|+++.++.+ -++..+....+... T Consensus 271 ael~~a~i~A~~a~fi~~~~~~~-~~~~~~~~~~~~---~~l--~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~ 344 (505) T protein:vir:96 271 SEMIAAELGAKKVGFYEQDPEAY-DQPPEDDQGEIV---EEV--EAGTYQLLPYGIRFKEHKIDHPHTNFGAFVKSSLRG 344 (505) T ss_pred HHHHHHHHhhhheeeeecCCccC-CCccccccCccc---ccc--CCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHH Confidence 4332 33333344556543221 111110000111 111 23444433467999999876 46899999999999 Q ss_pred HHhhhcCCceeeeccCccccc-CcchHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhcCCCC--C---c--eeE Q lcl|Aclame:pro 389 MSAVSHIPLIKLLGITPTGLN-ASSEGEIRVWYDYVRAYQRNALQ----QLMNDVIVMIQLSLFGAVD--P---S--IKW 456 (695) Q Consensus 389 iaaas~iP~t~L~G~sp~Gln-atge~D~~nyyd~i~~~Qe~~l~----p~l~~l~~~l~~s~~g~~~--~---d--~~~ 456 (695) ||+..|||.-.|.|. .++-| ||.-..+..+...++.+|+..+. |+.+.+++..+++ |.++ . + ... T Consensus 345 iaaglgi~ye~lt~D-~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~--G~i~~p~~~~~~~~~~ 421 (505) T protein:vir:96 345 VAAGMGPAYNRLAHD-LEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLISMSLLT--QALPLNMVDIDRLSQY 421 (505) T ss_pred HHhhcCCCHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcCCCCccchhhcee Confidence 999999999999985 34443 34445677788899999987654 4444444443333 4432 1 1 234 Q ss_pred EeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 457 QWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAE 536 (695) Q Consensus 457 ~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (695) .|.+.--..-. -.|.+++....+.+|..+..++......+.............. ... . ... .. T Consensus 422 ~w~~p~~~~iD-----P~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~--~~~-~-------Gl~--~~ 484 (505) T protein:vir:96 422 AFQPRGWDWVD-----PAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDVFDEIAWEEQL--MRD-K-------GVN--PT 484 (505) T ss_pred eeccCCccccC-----hHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHH--HHH-c-------CCC--CC Confidence 44333222111 1244667777888888888776555443332222111100000 000 0 000 00 Q ss_pred hcccccccccCCCccchhhhhhhhhccccccccccC Q lcl|Aclame:pro 537 GGDTGAPGGARAGATAPPTVANVNANVKPREAGAQD 572 (695) Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (695) . .............. .. .... T Consensus 485 ~----~~~~~~~~~~~~~~-~~----------~~d~ 505 (505) T protein:vir:96 485 P----PEQESKDATTDEED-DS----------ASDD 505 (505) T ss_pred C----CCCCCCCCCCCCCC-CC----------CCCC Confidence 0 00000000000000 00 0000 No 116 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=98.68 E-value=6.3e-08 Score=60.06 Aligned_cols=436 Identities=12% Similarity=0.057 Sum_probs=169.9 Q ss_pred cCCCCcccchhhcccccccccccccccchhhh-hhhcccccCCCCcccccccccccccccccchhhhhhhccCC------ Q lcl|Aclame:pro 37 TAAQPVPADMGRRGALNALDAAPVAEPSPSLR-LARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSG------ 109 (695) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 109 (695) |+++-...+ .-.|..... ..+.+... ..+....-.+|.+.. T Consensus 1 ~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~------------------~~rl~~l~~Yy~G~~~i~~~~ 48 (484) T protein:vir:77 1 MTSPLQKQE--------------NVDPEKAREEMLNLFTER------------------TQDLGDNTAYYESERRPDAVG 48 (484) T ss_pred CCCcccccC--------------CCCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhccccchhcc Confidence 111111000 000000000 00000000 000000001111100 Q ss_pred -CCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHH Q lcl|Aclame:pro 110 -FPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVR 188 (695) Q Consensus 110 -f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 188 (695) .....+......+...++|||+.++-++=+| |.+. .+.+..+.+.+.+++-++..... T Consensus 49 ~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g---------------~~~~------~~~~~~~~l~~i~~~N~~d~~~~ 107 (484) T protein:vir:77 49 VTVPQQMQKLLAHVGYPRLYIDAIAARQELEG---------------FRLG------GADKADEQLWDWWQANDLDIEST 107 (484) T ss_pred cccchhHHhhhhhcCcHHHHHHHHHhhhccCc---------------eecC------CcchhHHHHHHHHHhcCHhHHHH Confidence 0111111111223445667776665443333 3221 22334456788888888889999 Q ss_pred HHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceec-cccc-------ccccCCcee Q lcl|Aclame:pro 189 TTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNS-INPV-------ADDFYKPST 260 (695) Q Consensus 189 ~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~-~dp~-------s~~yg~P~~ 260 (695) ++.+.+-.||.|++++..+.++....... ....|+++++.++.+..... .++. ..+.++... T Consensus 108 ~~~~~a~~~G~a~~~v~~~~~~~~~~~~~----------~~~~i~~~~p~~~~~~~D~~~~~~~~a~~~~~~~~~~~~~~ 177 (484) T protein:vir:77 108 LGHTDSLVHGRSYITISKPDPNIDPGVDP----------EVPIIRVEPPTNLYAQIDPRTRQVMRAIRAIEDEEGNEVIG 177 (484) T ss_pred HHHHHHhhcCceEEEEecCCCCccccccc----------ccceEEEeccceeEEEecCCCCceEEEEEEEEeecCCcEEE Confidence 99999999999998887765543210000 01113333433333210000 0000 001112211 Q ss_pred EEE--cceE----------------EchhhE---EEecCCcchhhhhcccCCCCchHHHH-HHHHHHHHHHHhHHHHHHH Q lcl|Aclame:pro 261 WWM--IGTE----------------VHATRL---HTIVSRPVGDMLKPTYSFAGISMTQL-AMPYIDNWLRTRQSVSDIV 318 (695) Q Consensus 261 y~i--~~~~----------------iH~SRl---i~~~~~~~p~~~~~~~~~~G~S~l~~-~~~~l~~~~~~~~~~~~l~ 318 (695) +.+ .+.. -|.--. +.|..+ .....++|.|.++. +...+.+++++........ T Consensus 178 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~------~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~ 251 (484) T protein:vir:77 178 ATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNR------TRLSDLYGTTEITPELRSVTDAAARTLMLMQATA 251 (484) T ss_pred EEEEecCeEEEEEecCCceEeeccccCCCCCcceEEeccc------cccCccCCcccchHHHHHHHHHHHHHHHHHHHHH Confidence 111 0110 121111 111111 11234589998875 6666677777766544444 Q ss_pred HHhccceeeech--HHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEe-cccCChHHHHHHHHHHHHhhhcC Q lcl|Aclame:pro 319 KQFSVSGILMDL--AQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHI 395 (695) Q Consensus 319 ~~~~~~v~k~~~--~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~iaaas~i 395 (695) .-++.....+.+ ...+....+ +....+... ...+.++.+++-++.+++ +++.+..+.+.....+||+.+++ T Consensus 252 ~~~a~p~~~i~G~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~ 325 (484) T protein:vir:77 252 ELMGVPQRLLFGVKGEELGVDPE----TGQTLFDAY--LARILAFEDHESKAQQFSAAELRNFVDALDALDRKAAAYTGL 325 (484) T ss_pred HhhhhhHHHHhCCCcchhccccc----ccchhhhhh--hhhhcccCCCCceeEeecCCChHHHHHHHHHHHHHHhcccCC Confidence 333322111111 111111110 001111111 112334443344444443 23445666677778899999999 Q ss_pred CceeeeccCcccccCcchHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHhcCC-CC---CceeEEeccccccchhH Q lcl|Aclame:pro 396 PLIKLLGITPTGLNASSEGEIRVWYD---YVRAYQRNALQQLMNDVIVMIQLSLFGA-VD---PSIKWQWNALRELDDLE 468 (695) Q Consensus 396 P~t~L~G~sp~Glnatge~D~~nyyd---~i~~~Qe~~l~p~l~~l~~~l~~s~~g~-~~---~d~~~~f~pL~~~se~e 468 (695) |..-|-|. ..+ ++||+.=...+.. .++. ++..+.+.|++++.++..-..+. .+ .++.+.|.+....|..+ T Consensus 326 p~~~fg~~-~~n-~~Sg~Al~~~~~~l~~ka~~-k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~ 402 (484) T protein:vir:77 326 PPYYLSFS-SEN-PASAEAIRSSESRLVKTVER-KNKIFGGAWEQAMRVAYKVMNGGDIPPEYYRMESIWRDPSTPTYAA 402 (484) T ss_pred CHHHhccc-cCc-chHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCcccccccceEEecCCCCCCHHH Confidence 99998543 222 1567633222332 2333 34557888999888876544332 22 24788999999999888 Q ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCC Q lcl|Aclame:pro 469 VAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARA 548 (695) Q Consensus 469 ~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (695) .++...+.++.. .|.++...+...+...... .......................+. ........ T Consensus 403 ~ad~~~kl~~~g-----~gi~s~et~~~~l~~~~~~-------~~e~~~~~~ee~~~~~~~~~~~~~~----~~~~~~~~ 466 (484) T protein:vir:77 403 KADAATKLYNNG-----QGVIPKERARIDMGYSITE-------REEMRKWDEEEQAQGLGLMGTMFGT----DPSGGGNP 466 (484) T ss_pred HHHHHHHHHhcc-----CCCCCHHHHHhcCCCChhH-------HHHHHHHHHHHHHHHHHHHhhhccc----cccCCCCC Confidence 876554433321 2355555555444321111 0000000000000000000000000 00000000 Q ss_pred CccchhhhhhhhhccccccccccCceEEEEE Q lcl|Aclame:pro 549 GATAPPTVANVNANVKPREAGAQDAAMRAAG 579 (695) Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (695) ....... ....+-...++ T Consensus 467 ~~~~~~~-------------~~~~~~~~~~~ 484 (484) T protein:vir:77 467 DNPETPE-------------PQPNPAEEAAA 484 (484) T ss_pred CCCCccc-------------ccCCCccccCC Confidence 0000000 00000000000 No 117 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=98.68 E-value=6.4e-08 Score=60.02 Aligned_cols=364 Identities=13% Similarity=0.068 Sum_probs=161.0 Q ss_pred cchhhhhhhcc---CCCCchHHHHHHHh--ChhhhhHhhcchH--HHhh---CCc-eeeccchhhhhccCcccccccccc Q lcl|Aclame:pro 97 TSMDALSFVTS---SGFPGFPTLVLLAQ--LPEYRAMHEVLAD--ECIR---TWG-EAIGGTKEKADTSGLAAGGNAAST 165 (695) Q Consensus 97 ~~~~~~~~~~~---~~f~gy~~~a~~~~--~~~~r~~v~~~a~--d~tR---~~~-~i~~~~~~d~~~~g~~~~~~~~~~ 165 (695) +...+++.... .....|..+..|+. |.+-..-+.+|.+ +..| +|- .||+..++-..=.||+. T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~~------- 73 (409) T protein:vir:94 1 MTEKGIGYLRFKLSVHKRRAEMRYDQYAMKYVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFEN------- 73 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhcccCchhhcChhhhHHHHHHHhhhcchhHHHHHHhHhhcccCcccC------- Confidence 22222221111 01223333333331 2221111223321 1112 232 22222222111123321 Q ss_pred CCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccc- Q lcl|Aclame:pro 166 SDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNN- 244 (695) Q Consensus 166 ~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~- 244 (695) .+ ..+++.|.+-++.....++.+-+-.||.+++++.-+.++...-.++ +|.. .+.++|+..=.|.. T Consensus 74 ~d----~~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~~--sp~~-------~~~i~D~~~~~~~~a 140 (409) T protein:vir:94 74 DD----FTVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVI--EAVN-------ATGIIDPITGLLTEG 140 (409) T ss_pred Cc----hHHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEEe--ccce-------EEEEEecCCCceeee Confidence 11 1355666766677777788887778999998887654442211111 1111 12223331100100 Q ss_pred eeccc------ccccccCCce-eE---EEcce---EEchhh---EEEecCCcchhhhhcccCCCCchHH-HHHHHHHHHH Q lcl|Aclame:pro 245 YNSIN------PVADDFYKPS-TW---WMIGT---EVHATR---LHTIVSRPVGDMLKPTYSFAGISMT-QLAMPYIDNW 307 (695) Q Consensus 245 ~~~~d------p~s~~yg~P~-~y---~i~~~---~iH~SR---li~~~~~~~p~~~~~~~~~~G~S~l-~~~~~~l~~~ 307 (695) +...+ +....++.|. .| ...+. .-|+-- ++.|..++ .....+|.|.+ +.++....++ T Consensus 141 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~------~~~~~~G~s~I~e~v~~l~da~ 214 (409) T protein:vir:94 141 YAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRP------DAVRPFGRSRITRSGMYWQSNA 214 (409) T ss_pred EEEEEecCCCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEecccc------ccccccCccccchhHHHHHHHH Confidence 00000 0011112221 00 11111 113222 22333221 11335799977 6788888888 Q ss_pred HHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC----CceeEEEe-cccCChHHHH Q lcl|Aclame:pro 308 LRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA----TEEFFQFN-TPLSGLDALQ 382 (695) Q Consensus 308 ~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~----~e~~~~~~-~~lsgl~~~~ 382 (695) .++.....-...-++.....+-+... .+.....+...+.. +..+.++ .-++.+++ +++.++-+.+ T Consensus 215 ~r~~~~~~~~~e~~a~pqr~i~G~d~-d~~~~~~~~~~~~~---------i~~~~~d~dg~~~~v~q~~~~~l~~~~~~l 284 (409) T protein:vir:94 215 KRTLERADVTAEFYSFPQKYVTGLSD-DAEPMETWKATVSS---------MLQFTKDEDGDKPTLGQFTQPSMSPFTEQL 284 (409) T ss_pred HHHHHHHHHHHHHhcChhheeEecCC-CCcccchhhhhHHH---------hhcCCCCCCCCCceEEecCCCChhHHHHHH Confidence 88875544433333333222222211 00111112221111 2233221 12354443 4667777888 Q ss_pred HHHHHHHHhhhcCCceeeeccCccccc-CcchHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcC--CCCC---c Q lcl|Aclame:pro 383 AQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGEI---RVWYDYVRAYQRNALQQLMNDVIVMIQLSLFG--AVDP---S 453 (695) Q Consensus 383 ~~~~~~iaaas~iP~t~L~G~sp~Gln-atge~D~---~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g--~~~~---d 453 (695) .....++|+.+++|..-|-|.+ -| +|++.=. ..-...++.+| ..+...++++..+++.-..+ ..++ + T Consensus 285 ~~~~~~~a~~t~lP~~~lg~~~---~NpsSa~Al~a~~~~L~~~a~~k~-~~fg~~~~~~~rla~~i~~~~~~~~~~~~~ 360 (409) T protein:vir:94 285 RTAAAGFAGETGLTLDDLGFVS---DNPSSVEAIKASHENLRLAGRKAQ-RSLGAGLLNVAYLAACLRDDAPYLREQFRK 360 (409) T ss_pred HHHHHHHhhhcCCCHHHhcccc---CchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCcccccccc Confidence 8999999999999988886643 24 6666322 22223444433 44788899988765433322 3343 4 Q ss_pred eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhc--chhhhhhhhhhhhhhh Q lcl|Aclame:pro 454 IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQV--IRPDQVAARLNTEPDG 504 (695) Q Consensus 454 ~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~--i~~~e~r~~L~~~~~~ 504 (695) +.+.|.|+...+....|. .|++..+++++|. .+.+.+...+.....- T Consensus 361 ~~v~W~p~~~~~~~~~a~----~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 361 TKPKWEPLFEADASMLSL----IGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred ceEEeccCCCcchHHHHH----HHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 678899876555443332 3456666666663 2234444443332222 No 118 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=98.67 E-value=4.6e-08 Score=60.79 Aligned_cols=345 Identities=12% Similarity=0.044 Sum_probs=148.0 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccccccccccccccc-chhhhhhhccCCC----CchHHHHHH- Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGT-SMDALSFVTSSGF----PGFPTLVLL- 119 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f----~gy~~~a~~- 119 (695) |+||.+......++....+.+....................+..... .+.. -.+-++.+....| +.+..|+.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~-~~~~~~~~~~~~~~~~~~~~~pi~~~~la~~~ 79 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEV-LDRRELLDYVECMRMGQWYEPPMPWDGLARSF 79 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceee-cchhhHHHHHHHHhccchhccCcCHHHHHHHH Confidence 88877655433222211111000000000000000000000100000 0000 0011111111111 122223322 Q ss_pred HhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccce Q lcl|Aclame:pro 120 AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGR 199 (695) Q Consensus 120 ~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~ 199 (695) +.+..-..++-. -..+.+.+.+ | ++ .+. +..|..++..--++|- T Consensus 80 ~~~~~h~~~~~~-~~n~l~l~~~----P-------------------n~--------~~t----~~~f~~l~~d~ll~Gn 123 (368) T protein:vir:79 80 RAAAHHSSAVYV-KRNILVSTFI----P-------------------HP--------LLS----RATFERLVLDWQVFGN 123 (368) T ss_pred hhccccchhhhh-hcchhhhhcC----C-------------------Cc--------CCC----HHHHHHHHHHHhhcCC Confidence 222211111100 0001111100 0 00 000 1112222222346899 Q ss_pred EEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c--eEEchhhEEE Q lcl|Aclame:pro 200 AHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHT 275 (695) Q Consensus 200 ~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~--~~iH~SRli~ 275 (695) +++++.-+.+ |.+..|.++.+..+.... |. + .+|++. + +.+.+.-||+ T Consensus 124 ay~~~~r~~~-----------------G~~~~L~~l~~~~v~~~~----~~---~----~~~~~~~~~~~~~~~~~dIih 175 (368) T protein:vir:79 124 AYLERRENVL-----------------GGTIRLDTPLAKYVRRGL----DL---N----TYFFVQNWQQPYTFAAGSVFH 175 (368) T ss_pred eEEEEEEcCC-----------------CCEEEEEEeCcccceeec----cC---C----EEEEEecCCeEEEEccccEEE Confidence 9888765322 345567777776664321 11 1 123332 2 3567788888 Q ss_pred ecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHh-cccee-eechHHhhcchHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 276 IVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQF-SVSGI-LMDLAQALMPGANVDLSMRAELINRYR 353 (695) Q Consensus 276 ~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~-~~~v~-k~~~~~~l~~~~~~~l~~r~~~~~~~~ 353 (695) +..... .....|.|-++.+...+.--..+......++... +...+ ++.. ..++.+..+.+.+.++.. ..- T Consensus 176 ir~~~~------~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~-~~l~~e~~~~lk~~~~~~-~G~ 247 (368) T protein:vir:79 176 LQEPDI------NQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAGFILYMTD-AAQKQEDVDTLREAMKSA-KGP 247 (368) T ss_pred ecCCCC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC-CCCCHHHHHHHHHHHHHh-cCC Confidence 875321 2345799999999888876555555555544332 23322 3321 345555566677777653 233 Q ss_pred CCcee-EEEEcC--CceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCcccc--cCcchHHHHHHHHHHH Q lcl|Aclame:pro 354 DNRNI-LFLDKA--TEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITPTGL--NASSEGEIRVWYDYVR 424 (695) Q Consensus 354 ~n~~~-~~ld~~--~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp~Gl--natge~D~~nyyd~i~ 424 (695) +|.+. +++..+ ++.++....+.+. +-++.....++||++.+||-..| |..+.+- .++-|...+.||. T Consensus 248 ~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~ll-Gi~~~~t~~~sn~e~~~~~f~~--- 323 (368) T protein:vir:79 248 GNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLM-GIIPNNTGGFGDVEKAAMVFAR--- 323 (368) T ss_pred cccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHc-cccCCCCCccccHHHHHHHHHH--- Confidence 45444 444211 2334444444332 34455666788999999997554 7654322 1334444555543 Q ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEecc--ccccchhHHHHHHHHHH Q lcl|Aclame:pro 425 AYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNA--LRELDDLEVAESRYKQA 477 (695) Q Consensus 425 ~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~p--L~~~se~e~Aei~~~~a 477 (695) +.|.|.++++-++. ..+| ...+.|++ |...+.+.+|+...+.| T Consensus 324 ----~~l~Pl~~~ie~ln--~~l~----~e~~rF~~~~l~~~D~~a~a~~~~rsa 368 (368) T protein:vir:79 324 ----NEVKPLQDRLLAIN--DWIG----DEVVRFAPYALGGHDQPAAAPGGQRSA 368 (368) T ss_pred ----HHHHHHHHHHHHHH--hccC----cceeeechhHhhcccccccCCcccccC Confidence 34778777765422 1222 12355665 44556666666554444 No 119 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=98.64 E-value=9.6e-09 Score=64.54 Aligned_cols=361 Identities=12% Similarity=0.058 Sum_probs=155.2 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..|+... ..... .+.... ..+| .+.--+...++..++++|+++|++.-.-=++++.. T Consensus 1 M~~f~k~~--------~~~~~------~~~~~~-------~~~~-~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~ 58 (378) T protein:vir:85 1 MNLFGKVV--------SFSRG------KLNNDT-------QRVT-AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKY 58 (378) T ss_pred Cchhhhhh--------hhhhc------ccccCC-------ccee-eeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEE Confidence 11111000 00000 000000 0000 00001122355668889999998876543333211 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHH-hcCccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVI-HDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~-~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) ..++ ..... ...-.+......|..+=...-....|.+.+. +--++|-++++++..+. T Consensus 59 ~~~~-----~~~~~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~---------------- 116 (378) T protein:vir:85 59 KKSD-----VGSDT-LISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSE---------------- 116 (378) T ss_pred eccc-----ccccc-ccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCC---------------- Confidence 1110 00000 0000111222222211112222334444433 33467888887654321 Q ss_pred CcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHH Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYID 305 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~ 305 (695) .|.+.+... ...++.+-++.+|+|.. +-+...+.+.++...+.+. T Consensus 117 ~g~~~~~~~---------------------------~~~~~~~~~~dvih~~~--------~~~~~~~~~~~~~a~~~~~ 161 (378) T protein:vir:85 117 TGELLDLLF---------------------------ANDKKEYKPEELVRLVS--------PFYINEDTSILDNALASIQ 161 (378) T ss_pred CceEEEEEe---------------------------cCCCEEEcccceEEEec--------CcCccchhhHHHHHHHHHH Confidence 122322211 11233344556666652 1122223455554444433 Q ss_pred HHHHHhHHHHHHHHHhcc-ceeeechHHhhcchHHHHHHHHHHHH----HHhcCCceeEEEEcCCceeEEEecccCChH- Q lcl|Aclame:pro 306 NWLRTRQSVSDIVKQFSV-SGILMDLAQALMPGANVDLSMRAELI----NRYRDNRNILFLDKATEEFFQFNTPLSGLD- 379 (695) Q Consensus 306 ~~~~~~~~~~~l~~~~~~-~v~k~~~~~~l~~~~~~~l~~r~~~~----~~~~~n~~~~~ld~~~e~~~~~~~~lsgl~- 379 (695) .+. ...+. .+++++ ..+..+..+++.++++.. ....++.+++++++ +.+|++++.+...++ T Consensus 162 ~~~----------~~~~~~g~l~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~-g~~~~~l~~~~~~~~~ 228 (378) T protein:vir:85 162 TKL----------EQGKLRGLLKIN--AFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDN-KTEIVELKKDYSVLNK 228 (378) T ss_pred HHH----------hcCCcceEEEeC--CcCCHHHHHHHHHHHHHHHHHhhcccccccceecCC-CceEEeccCChhhhhH Confidence 221 11122 233443 234444444455554332 22234556778874 789999987654443 Q ss_pred HHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC---------- Q lcl|Aclame:pro 380 ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA---------- 449 (695) Q Consensus 380 ~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~---------- 449 (695) +.+....++||.+-|||..+|.|. ..|....+||.. -|.|.+.++-+-+-+..+-. T Consensus 229 ~~~~~~~~~Ia~~fgVPp~~l~~s-------~~e~~~~~f~~~-------tL~P~~~~ie~~l~~kLl~~~er~~~~~~~ 294 (378) T protein:vir:85 229 DEIELIKSELLTGYFMNENILLGT-------ATQEQQIYFYNS-------TIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) T ss_pred HHHHHHHHHHHHHhCCCHHHhcCC-------chHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhhhhhhhhcc Confidence 223455678999999999988541 123344455543 48888877766654433311 Q ss_pred CCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 450 VDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLT 529 (695) Q Consensus 450 ~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (695) ...++.|.+..|...+.+++ ++...+++..|+++++|+|..+...+..+.................... T Consensus 295 ~~~~~~f~~~~l~~~d~~~~-------~~~~~~~~~~G~~T~NE~R~~lgl~p~~gGD~~~~~~N~~~~~~~~~~~---- 363 (378) T protein:vir:85 295 YYERIIVDNQLFKFATLKEL-------IDLYHENINGPIFTQNQLLVKMGEQPIEGGDIYIANLNAVAVKNLSDLQ---- 363 (378) T ss_pred ccceeeecchhhhhcCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccccccchhhc---- Confidence 01235566677777777766 4566777888999999999987665543321111000000000000000 Q ss_pred hhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 530 YVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) ........ ....... T Consensus 364 -----~~~~~~~~----~~e~~n~ 378 (378) T protein:vir:85 364 -----GSRKDVAS----TDETNNQ 378 (378) T ss_pred -----CccCCCCC----CCCCCCC Confidence 00000000 0000000 No 120 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=98.62 E-value=1.2e-07 Score=58.55 Aligned_cols=419 Identities=12% Similarity=0.019 Sum_probs=165.3 Q ss_pred chhhhhhhcccccCCCCccccccccc--ccc--cccccchhhhhhhccC---CCCchHH---HHHHH--hChhhhhHhhc Q lcl|Aclame:pro 64 SPSLRLARQFEVDVSNYTPRERRAAS--YAL--DFNGTSMDALSFVTSS---GFPGFPT---LVLLA--QLPEYRAMHEV 131 (695) Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~---~f~gy~~---~a~~~--~~~~~r~~v~~ 131 (695) -+.+.+ ++..+-++.....-. +.- ...+.+.....+|.+. .+.|... +..++ .|| .+++||+ T Consensus 1 ~~~~~~-----~~~~gl~~~~~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~~~~~~~~p~~~r~~~~v~nw-~~~~Vd~ 74 (474) T protein:vir:81 1 MIQQQT-----VRIPSLSNDENALINGLLAQIENLRWKNLLRTSYYENKRTIQYVGTLIPPQYFNLGLVLGW-TGKAVDA 74 (474) T ss_pred CcCCCc-----CcCCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHhccCCChhhccccccHHHHHHHhhcCh-HHHHHHH Confidence 000000 111111111100000 000 0000111111122211 1122111 11121 233 3666666 Q ss_pred chHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCc Q lcl|Aclame:pro 132 LADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQ 211 (695) Q Consensus 132 ~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~ 211 (695) .++-+.=+|++ +.. ++++...+.+.|.+-++.....++.+-+-.||.+++++..+.|+. T Consensus 75 ~a~rl~~~Gf~---------------~~d------~~~~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~ 133 (474) T protein:vir:81 75 LARRCNLEGFV---------------WPD------GDLDSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDDE 133 (474) T ss_pred HHhhhcccceE---------------CCC------CCccchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCCC Confidence 66544433433 221 111223466677777777777777777778899998877544432 Q ss_pred hhccccCCccccccCcceEEEEEecchhcccc-----------cee-cccc----cccccCCce-eEEEc---c-eEEch Q lcl|Aclame:pro 212 IMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPN-----------NYN-SINP----VADDFYKPS-TWWMI---G-TEVHA 270 (695) Q Consensus 212 ~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~-----------~~~-~~dp----~s~~yg~P~-~y~i~---~-~~iH~ 270 (695) . .|+ |++++|.+++.. ... ..|. ....++.|. .|.+. + -.... T Consensus 134 ~--~~~--------------i~~~sp~~~~~~~D~~~~~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~ 197 (474) T protein:vir:81 134 P--EAL--------------IHVKDASEATGEWNRRRRGLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQV 197 (474) T ss_pred c--eeE--------------EEEeccceEEEEEeCCCCcceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeee Confidence 1 111 233333333211 000 0010 000111111 11110 0 00011 Q ss_pred hhEEEecCCcch-hhhhc-ccCCCCchHH-HHHHHHHHHHHHHhHHHHHH--HHHhccceee-echHHhhc---chHHHH Q lcl|Aclame:pro 271 TRLHTIVSRPVG-DMLKP-TYSFAGISMT-QLAMPYIDNWLRTRQSVSDI--VKQFSVSGIL-MDLAQALM---PGANVD 341 (695) Q Consensus 271 SRli~~~~~~~p-~~~~~-~~~~~G~S~l-~~~~~~l~~~~~~~~~~~~l--~~~~~~~v~k-~~~~~~l~---~~~~~~ 341 (695) .+.-+--|.|+. ...++ .....|.|-+ +.++..+.++.++.....-- .+.+.+.++. .+. .... +..... T Consensus 198 ~~~~~~~gvPvV~~~n~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~-~~~~d~d~~~~~~ 276 (474) T protein:vir:81 198 DRDEHVYGVPAQVLPYKPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADE-SALKNADGTIKSV 276 (474) T ss_pred ccCCCCCCcceEEecccccccCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCCh-hhcccccccccch Confidence 111111122211 01111 1123588865 67777777777766553333 3333344332 111 1111 111122 Q ss_pred HHHHHHHHHHhcCCceeEEEEcCCceeEEEe-cccCChHHHHHHHHHHHHhhhcCCceee-eccCcccccCcchHH---H Q lcl|Aclame:pro 342 LSMRAELINRYRDNRNILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKL-LGITPTGLNASSEGE---I 416 (695) Q Consensus 342 l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L-~G~sp~Glnatge~D---~ 416 (695) +...+..+..+-.+..........-++.+++ +++.++-+.+.....++|+.++||..-| ++. ..+ ++|+|.= . T Consensus 277 ~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~-~~n-p~SaeAi~a~~ 354 (474) T protein:vir:81 277 WEARLGRIKGLPDDADADIPQLARADVKQFPAASPDAHWSDINGLAKLFAREASLPDTAVAISG-LSN-PTSAESYDASQ 354 (474) T ss_pred hhhhHHHHhcCCCcccccccccccccccccCCCChhHHHHHHHHHHHHHHhhhCCCHHHhcccc-ccc-ccHHHHHHHHH Confidence 3333333322222211111111123455553 6777888899999999999999999887 442 111 1556632 2 Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcC----CCCC---ceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcc Q lcl|Aclame:pro 417 RVWYDYVRAYQRNALQQLMNDVIVMIQLSLFG----AVDP---SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVI 489 (695) Q Consensus 417 ~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g----~~~~---d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i 489 (695) ......++.+|+ .+.+.+++++.+.+.-..+ +.++ .+.+.|.+...+|..+.|+...|.+++.... . T Consensus 355 ~~l~~kae~k~~-~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~-----~ 428 (474) T protein:vir:81 355 YELIAEAEGAVD-DFTPALRKAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWL-----A 428 (474) T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCC-----C Confidence 334445555544 4788999988877644333 2222 4678899999999998876666555433211 1 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhh-hhhhhhhhhhhhhhhhhhhccc Q lcl|Aclame:pro 490 RPDQVAARLNTEPDGPYAGKLDANDDPGV-PADDDIDGVLTYVQRLAEGGDT 540 (695) Q Consensus 490 ~~~e~r~~L~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 540 (695) +...+...+.... .......... ...................... T Consensus 429 ~~~~~~~~lg~t~------~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 429 ETEVGLELIGLTP------QQARRAMADKRRVQGRGTLQALIDRSNNGATAQ 474 (474) T ss_pred cHHHHHhhcCCCH------HHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCCC Confidence 1122222221110 0000000000 0000000000000000000000 No 121 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=98.62 E-value=1.9e-07 Score=57.49 Aligned_cols=410 Identities=10% Similarity=-0.013 Sum_probs=176.2 Q ss_pred hhhcccccCCCCcccccccccccccccccchhhhhhhcc--CCCCchHHHHHHH-------------------------- Q lcl|Aclame:pro 69 LARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTS--SGFPGFPTLVLLA-------------------------- 120 (695) Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~gy~~~a~~~-------------------------- 120 (695) .++.+..+.+-.. +..--..+..-..-.......++.. ..-.-|..+..|+ T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ 79 (474) T protein:vir:94 1 MFNIIRMPWDKPY-GEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDW 79 (474) T ss_pred CcccccccCCCch-hhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcc Confidence 1111111111000 0000000000000000000000000 0000011111111 Q ss_pred --hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccc Q lcl|Aclame:pro 121 --QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFG 198 (695) Q Consensus 121 --~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G 198 (695) .+.+.+.||+..+.=++-+...+ . ..+++..+.++..+ +-+....+.++.+..-.|| T Consensus 80 ki~~n~~k~Ivd~~~~~l~g~p~~~---------------~-----~~d~~~~~~l~~~~-~n~~~~~~~e~~~~~~~~G 138 (474) T protein:vir:94 80 RITTNFHQNLVDQKVSYVASKPVTY---------------S-----CEDENVLKVIHDVL-DTRWDNKLIDILTATSNKG 138 (474) T ss_pred eeecchHHHHHHHHHhhhhcCCcee---------------c-----cCcHHHHHHHHHHH-hccHHHHHHHHHHHHhhcC Confidence 12344445554443333333332 1 22333444444443 3478889999999999999 Q ss_pred eEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceE----EchhhEE Q lcl|Aclame:pro 199 RAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTE----VHATRLH 274 (695) Q Consensus 199 ~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~----iH~SRli 274 (695) .+++++.++.++. + .+.+++|.++.|. |+..+...+.++ -.+|...+.. +...++. T Consensus 139 ~~~~~~~~d~~~~-----------------~-~i~~~~p~~~~~v-~d~~~~~~~~~~-ir~~~~~~~~~~~~yt~~~~~ 198 (474) T protein:vir:94 139 IDWLQVYINENGE-----------------M-KLFRVPAEQAIPI-WVDKEREELKSF-IRYYKFNNEEKVEFWTDTTVT 198 (474) T ss_pred ceEEEEEecCCCe-----------------e-EEEEEcccceEEE-EcCCCCCceEEE-EEEEEecCeEEEEEEeCCeEE Confidence 9999888754432 1 2344455554443 110011111111 1112221110 1112221 Q ss_pred Eec-------------------------CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeec Q lcl|Aclame:pro 275 TIV-------------------------SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMD 329 (695) Q Consensus 275 ~~~-------------------------~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~ 329 (695) .|. -..+|-.. -.++-.|.|.++.+.+.+.+++.+....+.-+..++...+.+. T Consensus 199 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~-~~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~ 277 (474) T protein:vir:94 199 YYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIA-FKNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILK 277 (474) T ss_pred EEEEcCCccccccccCcCcccccccccCCCccceEE-ecCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeee Confidence 111 01112111 1234579999999999999999999888887776666666554 Q ss_pred hHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEE--EecccCChHHHHHHHHHHHHhhhcCCceeeeccCccc Q lcl|Aclame:pro 330 LAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQ--FNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTG 407 (695) Q Consensus 330 ~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~--~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~G 407 (695) +... ....+.... .+ ..+++.++. +.+++. .+.+.+++...++...+.|...+++|-.-. .+.+| T Consensus 278 g~~~---~~~~~~~~~------~~-~~~~i~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~--~~~~~ 344 (474) T protein:vir:94 278 GYEG---EDLEEFMRG------LK-YYKAINVDG-DGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQT--DKFGS 344 (474) T ss_pred cCCc---ccchhhhhh------hh-ccceeeccC-CCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCc--ccccc Confidence 3321 111111111 11 123444543 445555 456777899999999999999999996432 11222 Q ss_pred ccCcchHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhh Q lcl|Aclame:pro 408 LNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV 484 (695) Q Consensus 408 lnatge~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~ 484 (695) |.||+.=..-|...+. ..++..++..|++++.++..-..... ..++.+.|++-...++.+.++.. . T Consensus 345 -n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a~~~----------~ 413 (474) T protein:vir:94 345 -APSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQSQII----------A 413 (474) T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCcccCHHHHHHHH----------H Confidence 4566632222333322 44566789999999988764332222 24688999887777777766542 2 Q ss_pred hhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccc Q lcl|Aclame:pro 485 QEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVK 564 (695) Q Consensus 485 ~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (695) .+|.++...+...+....+. . ........... ............ ....... ......... . T Consensus 414 ~~g~iS~et~l~~l~~v~D~------~-~E~eri~~E~~--~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~---e 474 (474) T protein:vir:94 414 QSQYLSRETLVKSSPLVDDY------K-AELERIEQEQM--EYNKQLPNLDDG------GADGAQQ-QEGSNNKES---E 474 (474) T ss_pred HcCCCCHHHHHHhCCCCCCH------H-HHHHHHHHHHH--HHHhhccccCCC------CCCCccc-CCCCccccc---C Confidence 24677776665554321110 0 00000000000 000000000000 0000000 000000000 0 No 122 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=98.62 E-value=1.9e-07 Score=57.49 Aligned_cols=410 Identities=10% Similarity=-0.013 Sum_probs=176.2 Q ss_pred hhhcccccCCCCcccccccccccccccccchhhhhhhcc--CCCCchHHHHHHH-------------------------- Q lcl|Aclame:pro 69 LARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTS--SGFPGFPTLVLLA-------------------------- 120 (695) Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~f~gy~~~a~~~-------------------------- 120 (695) .++.+..+.+-.. +..--..+..-..-.......++.. ..-.-|..+..|+ T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ 79 (474) T protein:vir:97 1 MFNIIRMPWDKPY-GEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDW 79 (474) T ss_pred CcccccccCCCch-hhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcc Confidence 1111111111000 0000000000000000000000000 0000011111111 Q ss_pred --hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccc Q lcl|Aclame:pro 121 --QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFG 198 (695) Q Consensus 121 --~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G 198 (695) .+.+.+.||+..+.=++-+...+ . ..+++..+.++..+ +-+....+.++.+..-.|| T Consensus 80 ki~~n~~k~Ivd~~~~~l~g~p~~~---------------~-----~~d~~~~~~l~~~~-~n~~~~~~~e~~~~~~~~G 138 (474) T protein:vir:97 80 RITTNFHQNLVDQKVSYVASKPVTY---------------S-----CEDENVLKVIHDVL-DTRWDNKLIDILTATSNKG 138 (474) T ss_pred eeecchHHHHHHHHHhhhhcCCcee---------------c-----cCcHHHHHHHHHHH-hccHHHHHHHHHHHHhhcC Confidence 12344445554443333333332 1 22333444444443 3478889999999999999 Q ss_pred eEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceE----EchhhEE Q lcl|Aclame:pro 199 RAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTE----VHATRLH 274 (695) Q Consensus 199 ~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~----iH~SRli 274 (695) .+++++.++.++. + .+.+++|.++.|. |+..+...+.++ -.+|...+.. +...++. T Consensus 139 ~~~~~~~~d~~~~-----------------~-~i~~~~p~~~~~v-~d~~~~~~~~~~-ir~~~~~~~~~~~~yt~~~~~ 198 (474) T protein:vir:97 139 IDWLQVYINENGE-----------------M-KLFRVPAEQAIPI-WVDKEREELKSF-IRYYKFNNEEKVEFWTDTTVT 198 (474) T ss_pred ceEEEEEecCCCe-----------------e-EEEEEcccceEEE-EcCCCCCceEEE-EEEEEecCeEEEEEEeCCeEE Confidence 9999888754432 1 2344455554443 110011111111 1112221110 1112221 Q ss_pred Eec-------------------------CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeec Q lcl|Aclame:pro 275 TIV-------------------------SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMD 329 (695) Q Consensus 275 ~~~-------------------------~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~ 329 (695) .|. -..+|-.. -.++-.|.|.++.+.+.+.+++.+....+.-+..++...+.+. T Consensus 199 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~-~~nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~ 277 (474) T protein:vir:97 199 YYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIA-FKNNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILK 277 (474) T ss_pred EEEEcCCccccccccCcCcccccccccCCCccceEE-ecCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeee Confidence 111 01112111 1234579999999999999999999888887776666666554 Q ss_pred hHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEE--EecccCChHHHHHHHHHHHHhhhcCCceeeeccCccc Q lcl|Aclame:pro 330 LAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQ--FNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTG 407 (695) Q Consensus 330 ~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~--~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~G 407 (695) +... ....+.... .+ ..+++.++. +.+++. .+.+.+++...++...+.|...+++|-.-. .+.+| T Consensus 278 g~~~---~~~~~~~~~------~~-~~~~i~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~--~~~~~ 344 (474) T protein:vir:97 278 GYEG---EDLEEFMRG------LK-YYKAINVDG-DGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQT--DKFGS 344 (474) T ss_pred cCCc---ccchhhhhh------hh-ccceeeccC-CCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCc--ccccc Confidence 3321 111111111 11 123444543 445555 456777899999999999999999996432 11222 Q ss_pred ccCcchHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhh Q lcl|Aclame:pro 408 LNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV 484 (695) Q Consensus 408 lnatge~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~ 484 (695) |.||+.=..-|...+. ..++..++..|++++.++..-..... ..++.+.|++-...++.+.++.. . T Consensus 345 -n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~p~~~~e~a~~~----------~ 413 (474) T protein:vir:97 345 -APSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNRMMNDAEQSQII----------A 413 (474) T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCcccCHHHHHHHH----------H Confidence 4566632222333322 44566789999999988764332222 24688999887777777766542 2 Q ss_pred hhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccc Q lcl|Aclame:pro 485 QEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVK 564 (695) Q Consensus 485 ~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (695) .+|.++...+...+....+. . ........... ............ ....... ......... . T Consensus 414 ~~g~iS~et~l~~l~~v~D~------~-~E~eri~~E~~--~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~---e 474 (474) T protein:vir:97 414 QSQYLSRETLVKSSPLVDDY------K-AELERIEQEQM--EYNKQLPNLDDG------GADGAQQ-QEGSNNKES---E 474 (474) T ss_pred HcCCCCHHHHHHhCCCCCCH------H-HHHHHHHHHHH--HHHhhccccCCC------CCCCccc-CCCCccccc---C Confidence 24677776665554321110 0 00000000000 000000000000 0000000 000000000 0 No 123 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=98.61 E-value=5.6e-08 Score=60.34 Aligned_cols=382 Identities=10% Similarity=0.015 Sum_probs=177.1 Q ss_pred ccccccchhhhhhhccCCCCchHHHHHHH-----------------------hChhhhhHhhcchHHHhhCCceeeccch Q lcl|Aclame:pro 92 LDFNGTSMDALSFVTSSGFPGFPTLVLLA-----------------------QLPEYRAMHEVLADECIRTWGEAIGGTK 148 (695) Q Consensus 92 ~~~~~~~~~~~~~~~~~~f~gy~~~a~~~-----------------------~~~~~r~~v~~~a~d~tR~~~~i~~~~~ 148 (695) +...-... .-.-|..+..|+ .+.+.+.||+..+.=++.+...+ T Consensus 1 ~~~~~~~~---------~~~r~~~l~~yy~g~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~----- 66 (440) T protein:vir:95 1 MLAAFLGS---------QKQRLAILASYAQGDNFSILSGHRRLDDEKADYRVRHKWGGYISSFATGYVIGNPVSI----- 66 (440) T ss_pred ChhhHHHH---------HHHHHHHHHHHhccCCcccccccccccccCCcceeecchHHHHHHhhhhheeccCceE----- Confidence 00000000 000112222222 12333444444332222222222 Q ss_pred hhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcc Q lcl|Aclame:pro 149 EKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGS 228 (695) Q Consensus 149 ~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~ 228 (695) .. ....+.+..+.|...+++-++...+.++.+.+-.||.++.++.++.++.. T Consensus 67 ----------~~--~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~---------------- 118 (440) T protein:vir:95 67 ----------GV--MEGGSADQLSTIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVD---------------- 118 (440) T ss_pred ----------ee--CCCccHHHHHHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCce---------------- Confidence 11 22334556667888888889999999999999999999999887654421 Q ss_pred eEEEEEecchhccccceecccccccccCCceeEEEcce---EE-chhhEEEec-------------C-----Ccchhhhh Q lcl|Aclame:pro 229 FQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGT---EV-HATRLHTIV-------------S-----RPVGDMLK 286 (695) Q Consensus 229 l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~---~i-H~SRli~~~-------------~-----~~~p~~~~ 286 (695) .+.+++|.++.|..-+. ....+.|. -.+|..... .| -..+++++. . ..+|-.. T Consensus 119 --~i~~~~p~~~~~~~d~~-~~~~~~~~-i~~~~~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~- 193 (440) T protein:vir:95 119 --RVVLISPLEMFVIRDLT-VEQNIIAA-VHLPIYADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVE- 193 (440) T ss_pred --EEEEEcccceEEEEcCC-CCCceEEE-EEEEEecCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEE- Confidence 12333444433321000 00001110 001111000 00 011111110 0 0011111 Q ss_pred cccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHh---hcchHHHHHHHHHHHHHHhcCCceeEEEEc Q lcl|Aclame:pro 287 PTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQA---LMPGANVDLSMRAELINRYRDNRNILFLDK 363 (695) Q Consensus 287 ~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~---l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~ 363 (695) -.++-+|.|.++.+.+-+.+++.+....+.-+..++...+.+.+... ..++....+.....++ ...+......+ T Consensus 194 ~~n~~~g~sd~e~v~~lida~~~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~- 270 (440) T protein:vir:95 194 WWNNRFRMGDYESEISLIDAYDAGQSDTANYMSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLF--LKTGISTTGQQ- 270 (440) T ss_pred eeCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcceeeeecccccCCCCccchhhhhhcccee--cccccccccCC- Confidence 12356799999999999999999999888888877776666544221 1222111111111110 01111111111 Q ss_pred CCce--eEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHH---HHHHhhhhhHHHHHH Q lcl|Aclame:pro 364 ATEE--FFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYV---RAYQRNALQQLMNDV 438 (695) Q Consensus 364 ~~e~--~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i---~~~Qe~~l~p~l~~l 438 (695) ++.+ |-+.+.++++....++...+.|...+++|-.-+-+. +| |.||+. ++.=+..+ ...++..++..|.++ T Consensus 271 ~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--~~-n~Sg~A-l~~~~~~l~~k~~~k~~~~~~~l~~~ 346 (440) T protein:vir:95 271 TTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIPNLDDDRF--NS-TSSGIA-LLYKMIGLEQVRKDKETYFTKALRRR 346 (440) T ss_pred CCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccc--cc-cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2233 444456677899999999999999999997544221 22 446663 43322222 223456688889998 Q ss_pred HHHHHHHh---cC-CC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 439 IVMIQLSL---FG-AV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDAN 513 (695) Q Consensus 439 ~~~l~~s~---~g-~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~ 513 (695) +.+++.-. .+ .. ..++++.|++....++.+.++...+. .|.++...+...+.... ...+ T Consensus 347 ~~li~~~~~~~~~~~~~~~~v~i~f~~~~p~~~~~~ad~~~kl---------~g~iS~et~~~~l~~~d-------~~~E 410 (440) T protein:vir:95 347 YELISNIHKAINGPVIEANKLTFTFHPNIPQDVWTEIKAYIEA---------GGEISQETLMENASFTD-------YKTE 410 (440) T ss_pred HHHHHHHHhhcCCcccccccceEEeCCCCCCCHHHHHHHHHHH---------hccCcHHHHHHhCCCCC-------cHHH Confidence 88865432 11 11 23688999999999999988876553 24566555444432110 0000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 514 DDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) ....... ............+... ......+ T Consensus 411 -~~ri~~E-~~~~~~~~~~~~~~~~--------~~~~~~e 440 (440) T protein:vir:95 411 -HSRILKQ-GGSSDLEIGQIVGDAD--------VGQADTE 440 (440) T ss_pred -HHHHHHH-HHHhhhhHHhhccCCC--------CCCcCCC Confidence 0000000 0000000000000000 0000000 No 124 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=98.61 E-value=1.3e-07 Score=58.36 Aligned_cols=377 Identities=9% Similarity=0.017 Sum_probs=154.0 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..|..+..+-. ....+......+..-.-..+.+++.+.++|++.|+++-.--+++... T Consensus 1 MGlf~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~ 59 (395) T protein:vir:98 1 MGILDFFSFKKS---------------------GTLSDDDSGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRLKTP 59 (395) T ss_pred CcchhhhcCCCc---------------------ccccccccchhhhhhcchhhhhhHHHHHHHHHHHHHHhhCceeEEec Confidence 222222211000 00001000111111111233467788999999999987765544321 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC-ccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R-l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) .. +...+......|...=..+--...|.+.+.+.. ++|-+++++.-+. .. ++... T Consensus 60 ~~--------------~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~-~~----~~~~~----- 115 (395) T protein:vir:98 60 EK--------------LTENQKDWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGK-GI----YVADS----- 115 (395) T ss_pred CC--------------cccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCC-ce----ecCCc----- Confidence 10 001111122222211112223344444444444 4777877654321 10 11000 Q ss_pred CcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHH Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYID 305 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~ 305 (695) +.-.. .+.+..+. ...... |.+ .+.+-++.||+|.....+. ...+.++++..-+.+. T Consensus 116 ---~~~~~-----~~~~~~~~--~~~~~~------~~~-~~~~~~~evih~k~~~~~~------~~~~~~~~~~~~~~~~ 172 (395) T protein:vir:98 116 ---FTQDK-----KISGSQFK--VSRVQG------QTY-EKTFTFDQVIYLKNDNSDL------MSKVESLWEEYGELLG 172 (395) T ss_pred ---ccccc-----cccCcccc--eeeecC------cee-eeEecCccEEEecCCCCCc------cccccchhhhHHHHHH Confidence 00000 00000000 000001 111 1233455677776432211 1124444443333332 Q ss_pred HHHHHhHHHHH--HHHHhccceeeechHHhhcch-HHHHHHHHHHH-HHHhcCCce-eEEEEcCCceeEEEecccC---- Q lcl|Aclame:pro 306 NWLRTRQSVSD--IVKQFSVSGILMDLAQALMPG-ANVDLSMRAEL-INRYRDNRN-ILFLDKATEEFFQFNTPLS---- 376 (695) Q Consensus 306 ~~~~~~~~~~~--l~~~~~~~v~k~~~~~~l~~~-~~~~l~~r~~~-~~~~~~n~~-~~~ld~~~e~~~~~~~~ls---- 376 (695) ..........+ ...................++ ..+...+.++. +....+|.+ ++.+++ +-+|+.++.+.. T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-g~~~~~l~~~~~~~~~ 251 (395) T protein:vir:98 173 HVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTVEKIRTESVVGIPVTA-NTNYEEYGSKNTGAVK 251 (395) T ss_pred HHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHHhhhhcCCcceeecCC-CceeEecccccccccC Confidence 22221111111 111111111111111111111 11222222222 222223333 334543 567888765432 Q ss_pred ----ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC--C Q lcl|Aclame:pro 377 ----GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA--V 450 (695) Q Consensus 377 ----gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~--~ 450 (695) .+-++.....++||.+-+||..+|-| -.++-|.....||. .-|.|.+..+-+-+-+..+.. . T Consensus 252 ~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~-----~~sn~e~~~~~f~~-------~tl~P~~~~ie~~l~~kll~~~~~ 319 (395) T protein:vir:98 252 SYVDDIKKLKDQYMAEFAEMLGIPISLLHG-----DIADNQKNYELLLE-------GPIESLITNIVDGLEYAIFDKSET 319 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcC-----CcccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCChhhh Confidence 23444455567899999999998832 12333444556654 347888888777665555442 2 Q ss_pred CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhh-h-hhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 451 DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYA-G-KLDANDDPGVPADDDIDGVL 528 (695) Q Consensus 451 ~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 528 (695) ..++.|.|+.|...+.+++ ++...+++..|+++.+|+|..+...+..+.. + ......... ... T Consensus 320 ~~g~~f~~~~l~~~d~~~~-------~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~gD~~~~~~n~~~-------~~~- 384 (395) T protein:vir:98 320 LQGSFIKVTGLKNYDLFSI-------SNQADKLISSGFVFIDEVREEIGLPELPDGLGKVLYMTKNYES-------VLE- 384 (395) T ss_pred cCcceeeehhhhccCHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccee-------ccc- Confidence 4457788888888887766 5566677889999999999987665543311 0 000000000 000 Q ss_pred hhhhhhhhhcccccccccCCCccchhhh Q lcl|Aclame:pro 529 TYVQRLAEGGDTGAPGGARAGATAPPTV 556 (695) Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (695) .-+....... . T Consensus 385 ----~gge~~~~~~-------------~ 395 (395) T protein:vir:98 385 ----RGGEVDEEVE-------------T 395 (395) T ss_pred ----ccCCCCCCCC-------------C Confidence 0000000000 0 No 125 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=98.59 E-value=2.3e-07 Score=56.95 Aligned_cols=428 Identities=9% Similarity=-0.001 Sum_probs=165.4 Q ss_pred ccccchhhh--hhhcccccCCCCccccccccccccc-----ccccchhhhhhhccCCC---Cc------hHHHHHHHhCh Q lcl|Aclame:pro 60 VAEPSPSLR--LARQFEVDVSNYTPRERRAASYALD-----FNGTSMDALSFVTSSGF---PG------FPTLVLLAQLP 123 (695) Q Consensus 60 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~f---~g------y~~~a~~~~~~ 123 (695) -+.|.-..+ .+.+...+.....+.........+. ..++......+|.+... ++ |........+. T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~~~~~~~~~~~~~~~~~~~v~n 80 (501) T protein:vir:25 1 MTVPVDVIADAPAADVEFPEDSMSREQLGALVADMWRLHISERQWLDRIYEYTKGLRGRPEVPEGASDEVKELAKLSVKN 80 (501) T ss_pred CcccchhhhccCcccccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhccccCChhhhhhHhhhhcC Confidence 111110000 0000000000000000000000000 00000000011111110 01 11111111223 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPY 203 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~ 203 (695) ..++|||+.++=+.= .||++.. .+..+.+...|++=++.....++.+.+-.||.|+++ T Consensus 81 ~~~~ivd~~a~~l~~---------------~gf~~~d-------~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~ 138 (501) T protein:vir:25 81 VLSLVRDSFAQNLSV---------------VGYRNAL-------AKENDPAWEMWQRNRMDARQAEVHRPALTYGASYVT 138 (501) T ss_pred hHHHHHHHHHhhhcc---------------cceecCC-------ccchHHHHHHHHhcChhHHHHHHHHHHhhcCceEEE Confidence 345555554443322 2333321 112234566677667778888888888889999988 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceeccccccc----------------------ccCCcee- Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVAD----------------------DFYKPST- 260 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~----------------------~yg~P~~- 260 (695) +..+.++. .|++++|.++.+... ||... .++.|.. T Consensus 139 v~~de~~~-------------------~i~~~sp~~~~~iy~---D~~~~~~~~~ai~~~~~~~~~~~~~~~~~y~~~~~ 196 (501) T protein:vir:25 139 VTPTDEGP-------------------VFRTRSPRQILAVYA---DPSVDAWPQYALETWVAQKDAKPHRRGVLYDDTYM 196 (501) T ss_pred EecCCCCC-------------------eEEEeccccEEEEEe---cCCCCcceeEEEEEEeeccccCcceeEEEecCeeE Confidence 76543321 133444444432110 11100 0111111 Q ss_pred EEEc--ce----------------------EEchh-hEEEecCCcch-hhhhcccCCCCchHHHHHHHHHHHHHHHhHHH Q lcl|Aclame:pro 261 WWMI--GT----------------------EVHAT-RLHTIVSRPVG-DMLKPTYSFAGISMTQLAMPYIDNWLRTRQSV 314 (695) Q Consensus 261 y~i~--~~----------------------~iH~S-Rli~~~~~~~p-~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~ 314 (695) |.+. +. ..++. .-..|..-|+. ..-.+..+.+|.|.++.+++.+.+++++.... T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~~~~~~~g~sdie~v~~l~Da~~~~~s~~ 276 (501) T protein:vir:25 197 YELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNGRDADDMIVGEVAPLILLQQAINSVNFDR 276 (501) T ss_pred EEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCccccCccccchhhhhHHHHHHHHHHHHHH Confidence 1110 00 00000 00000000110 11111225679999999999889998877765 Q ss_pred HHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEe-cccCChHHHHHHHHHHHHhhh Q lcl|Aclame:pro 315 SDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVS 393 (695) Q Consensus 315 ~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~iaaas 393 (695) ......++.....+.+. ..+.. +.++... ..++++.+++-++-+++ +++.+..+.+.....+||+.+ T Consensus 277 ~~~~e~~a~p~~~i~G~---~~~~~-------~~~~~~~--~~i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~s 344 (501) T protein:vir:25 277 LIVSRFGANPQRVISGW---TGSKA-------EVLKASA--LRVWTFEDPEVKAQAFPPASVEPYNLILEEMLQHVAMVA 344 (501) T ss_pred HHHHHhhccHHHHHhCC---CCCcc-------chhhhcc--cceeccCCCCceEEEecccChHHHHHHHHHHHHHHHhhc Confidence 44433333221111111 11111 1122211 22344443344454544 345567788889999999999 Q ss_pred cCCceeeeccCcccccCcchHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCC---CceeEEeccccccchh Q lcl|Aclame:pro 394 HIPLIKLLGITPTGLNASSEGEI---RVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVD---PSIKWQWNALRELDDL 467 (695) Q Consensus 394 ~iP~t~L~G~sp~Glnatge~D~---~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~---~d~~~~f~pL~~~se~ 467 (695) ++|..-|-|.+. |.||+.=. ...-..++. ++..++..|++++.+++.-..+..+ .++.+.|.+....|.. T Consensus 345 ~~P~~~~~~~~~---N~Sg~Al~~~~~~l~~ka~~-k~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~ 420 (501) T protein:vir:25 345 QISPAQVTGKMI---NVSAEALAAAEANQQRKLAA-KRESFGESWEQLLRLAAEMDDDPDTAADSGAEVLWRDTEARSFG 420 (501) T ss_pred CCChhhhccccC---ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCccccceeeeEEecCCCCCCHH Confidence 999988876432 55677332 222233333 4455789999988887655543322 3688999999999998 Q ss_pred HHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccC Q lcl|Aclame:pro 468 EVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGAR 547 (695) Q Consensus 468 e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (695) +.|+...+.. ..| ++.......+.... . ............. ............ ......... T Consensus 421 ~~ada~~kl~-------~~g-is~et~~~~~~g~~-----~-~~ie~~~~~~~e~--~~~~~~~~~~~~--~~~~~~~~~ 482 (501) T protein:vir:25 421 AVVDGITKLA-------SAG-IPIEHLLSMVPGMT-----Q-QTIQAIKDSLRGG--EVKSLVDKLLSN--EPAPVPPPP 482 (501) T ss_pred HHHHHHHHHH-------hcC-CCHHHHHHHcCCCC-----H-HHHHHHHHHHHHH--hHHHHHHHhhcc--CcCCCCCCC Confidence 8876655443 333 23332222211110 0 0000000000000 000000000000 000000000 Q ss_pred CCccchh-hhhhhhhccccccc Q lcl|Aclame:pro 548 AGATAPP-TVANVNANVKPREA 568 (695) Q Consensus 548 ~~~~~~~-~~~~~~~~~~~~~~ 568 (695) ....... ......+. ... T Consensus 483 ~~~~~~~~~~~~~~~~---~g~ 501 (501) T protein:vir:25 483 PQAAAQALNEGGVNGN---GGA 501 (501) T ss_pred CCCCccccccccCCCC---CCC Confidence 0000000 00000000 000 No 126 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=98.58 E-value=1.1e-07 Score=58.71 Aligned_cols=362 Identities=12% Similarity=0.042 Sum_probs=156.3 Q ss_pred cchhhhhhhcc---CCCCchHHHHHHHh--ChhhhhHhhcchH--H---HhhCCc-eeeccchhhhhccCcccccccccc Q lcl|Aclame:pro 97 TSMDALSFVTS---SGFPGFPTLVLLAQ--LPEYRAMHEVLAD--E---CIRTWG-EAIGGTKEKADTSGLAAGGNAAST 165 (695) Q Consensus 97 ~~~~~~~~~~~---~~f~gy~~~a~~~~--~~~~r~~v~~~a~--d---~tR~~~-~i~~~~~~d~~~~g~~~~~~~~~~ 165 (695) +...+++.... .....|..+..|+. |++-.--+.+|.+ + +.=+|- .||+..++-..=.||+. T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~~------- 73 (409) T protein:vir:16 1 MTEKGIGYLRFKLSVHKRRAEMRYEQYAMKHVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFEN------- 73 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHhccCchhhcchhhhHHHHHHHhhhcChhHHHHHHhHhhcccccccC------- Confidence 22222211100 01223333333321 2211111112210 0 111232 12222221111123321 Q ss_pred CCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccc-c Q lcl|Aclame:pro 166 SDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPN-N 244 (695) Q Consensus 166 ~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~-~ 244 (695) .+ +.+.+.|.+-++.....++.+-+-.||.+++++.-+.++...-.+. +|.. -+.++|+..=.|. . T Consensus 74 ~d----~~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~--sP~~-------~~~i~D~~~~~~~~a 140 (409) T protein:vir:16 74 DD----FTVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVI--EATN-------ATGIIDPITGLLTEG 140 (409) T ss_pred cc----hHHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEE--cccc-------eEEEeecccccceee Confidence 11 1356667777777788888888888999998887654432111111 1111 1222333111110 0 Q ss_pred eecccccccccCCceeEE--Ecce-------------EEchhh---EEEecCCcchhhhhcccCCCCchHH-HHHHHHHH Q lcl|Aclame:pro 245 YNSINPVADDFYKPSTWW--MIGT-------------EVHATR---LHTIVSRPVGDMLKPTYSFAGISMT-QLAMPYID 305 (695) Q Consensus 245 ~~~~dp~s~~yg~P~~y~--i~~~-------------~iH~SR---li~~~~~~~p~~~~~~~~~~G~S~l-~~~~~~l~ 305 (695) +...+.. ..+.+..+. ..+. .-|+-- ++.|..++- ....+|.|-+ +.++.... T Consensus 141 ~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~------~~~~~G~seI~~~v~~l~d 212 (409) T protein:vir:16 141 YAVLERD--ENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPD------AVRPFGRSRITRSGMYWQS 212 (409) T ss_pred eEEEEec--CCCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEeccccc------ccccCCccccchhHHHHHH Confidence 1111110 111221111 1110 112221 223332211 1235799976 67888888 Q ss_pred HHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC----CceeEEEe-cccCChHH Q lcl|Aclame:pro 306 NWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA----TEEFFQFN-TPLSGLDA 380 (695) Q Consensus 306 ~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~----~e~~~~~~-~~lsgl~~ 380 (695) ++.++..-..--..-++.....+-+... .+.....+...+. .+..+.++ +-++.+++ +++.++-+ T Consensus 213 a~~r~~~~~~~~~e~~a~pqr~i~G~d~-d~~~~~~~~~~~~---------~i~~~~~d~~g~~~~v~q~~~~~l~~~~~ 282 (409) T protein:vir:16 213 NAKRTLERADVTAEFYSFPQKYVTGLSD-DAEPMETWKATVS---------SMLQFTKDEDGDKPTLGQFTQPSMSPFTE 282 (409) T ss_pred HHHHHHHHHHHHHHHhcChhheeEecCC-CCCccchhhhhhh---------HhhccCCCCCCCCceEEecCCCChhHHHH Confidence 8888776544333333332222222211 0111111111111 12333211 12354443 56778888 Q ss_pred HHHHHHHHHHhhhcCCceeeeccCccccc-CcchHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcC--CCCC-- Q lcl|Aclame:pro 381 LQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGE---IRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFG--AVDP-- 452 (695) Q Consensus 381 ~~~~~~~~iaaas~iP~t~L~G~sp~Gln-atge~D---~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g--~~~~-- 452 (695) .+.....++|+.+++|..-|-|.+ -| +|++.= ...-...++.+| ..+...++++..+++.-..+ ..++ T Consensus 283 ~l~~~~~~~a~~s~lP~~~lg~~~---~NpsSa~Ai~a~~~~L~~ka~~k~-~~fg~~l~~~~rla~~~~~~~~~~~~~~ 358 (409) T protein:vir:16 283 QLRTAAAGFAGETGLTLDDLGFVS---DNPSSVEAIKASHENLRLAGRKAQ-RSLGAGLLNVAYLAACLRDDVPYLREQF 358 (409) T ss_pred HHHHHHHHHhhhcCCCHHHccccc---CchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccchhh Confidence 899999999999999999886643 24 566632 223333455544 44788999988876544333 3333 Q ss_pred -ceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhc-chh-hhhhhhhhhhhhh Q lcl|Aclame:pro 453 -SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQV-IRP-DQVAARLNTEPDG 504 (695) Q Consensus 453 -d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~-i~~-~e~r~~L~~~~~~ 504 (695) .+.+.|.|...++....| ..+++..+++.+|. +.. +.+.+.+.....- T Consensus 359 ~~~~v~W~~~~~~~~~s~a----~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 359 SKTKPKWEPLFEADASMLS----LIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred ccceEEecCCCCcchhhHH----HHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 357889987655532222 23455555555542 222 2222322221111 No 127 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=98.57 E-value=2.6e-07 Score=56.68 Aligned_cols=430 Identities=9% Similarity=0.035 Sum_probs=175.6 Q ss_pred hhhccccccccccccccc-chhhhhhhcccccCCCCcccccccccccccccc-cchhhh-hhh--ccCCCCchHHHHHHH Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEP-SPSLRLARQFEVDVSNYTPRERRAASYALDFNG-TSMDAL-SFV--TSSGFPGFPTLVLLA 120 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~--~~~~f~gy~~~a~~~ 120 (695) |.. +-.+.--+.+| .|+.-...|-.+.. +... .....+ .+. ...-..-|..+..|+ T Consensus 1 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~e~~~~~i~~~i~~~~~~~~r~~~l~~YY 61 (483) T protein:vir:12 1 MAQ----ALIKGGNILYPSQPTQTEIFDAIVRT---------------NNKPETLEEMIVRYIKQHLEKLPEISIGQEYY 61 (483) T ss_pred Ccc----chhcCCceeecCcchhhhhhhccccc---------------CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 110 00000001111 01110011100000 0000 000000 000 000011122222222 Q ss_pred --hChhhhhH---hhcchHHHhh-------CCc-eeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHH Q lcl|Aclame:pro 121 --QLPEYRAM---HEVLADECIR-------TWG-EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAV 187 (695) Q Consensus 121 --~~~~~r~~---v~~~a~d~tR-------~~~-~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 187 (695) .|.+..+- ..--+.+.+| +|. .|++....=.+.++.++ +..+.+..+.|...++. +....+ T Consensus 62 ~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~-----~~~d~~~~~~l~~~~~n-~~~~~~ 135 (483) T protein:vir:12 62 EQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF-----KHTDDEVVKRIDEVLGN-RFDDKL 135 (483) T ss_pred ccccccccccccccccccccccccccccccchHHHHHHHHhhhhcccCcee-----ccCChHHHHHHHHHHhc-cHHHHH Confidence 12111110 0000111111 111 11111111112222222 12344555666655543 678888 Q ss_pred HHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccc--------------eeccccccc Q lcl|Aclame:pro 188 RTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNN--------------YNSINPVAD 253 (695) Q Consensus 188 ~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~--------------~~~~dp~s~ 253 (695) .++.+.+-.||.+++++.++.++.. .+.+++|.++.|.. +...+-..- T Consensus 136 ~~~~~~~~~~G~~y~~v~~d~d~~~------------------~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~ 197 (483) T protein:vir:12 136 HSVLTGASNKGIEWLHPYLDEEGEF------------------KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKV 197 (483) T ss_pred HHHHHHHhhCCeEEEEEEEcCCCce------------------EEEEEcccceEEEEcCCCCCceEEEEEEEEeecceEE Confidence 8888888889999999887655421 12333333333211 000000000 Q ss_pred ccCCc---eeEEEcceE-------------EchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHH Q lcl|Aclame:pro 254 DFYKP---STWWMIGTE-------------VHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDI 317 (695) Q Consensus 254 ~yg~P---~~y~i~~~~-------------iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l 317 (695) .++.| .+|...+.. +|. .-.-|. .+|-. .-.++-+|.|.++.+.+.+.+++.+....+.- T Consensus 198 ~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g--~vPvv-~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~ 273 (483) T protein:vir:12 198 EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHF-STGSWG--KIPFI-PFKNNDLEISDIFMYKTLIDAYNRRLSDLSNT 273 (483) T ss_pred EEEecCeEEEEEEeCCeeeeccccccccccccc-ccCCCC--ccceE-EecCCCCCCCchhhHHHHHHHHHHHHHHHHHH Confidence 11111 111111110 000 000011 11111 11234579999999999999999998888887 Q ss_pred HHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEc-CCceeEEEecccCChHHHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 318 VKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK-ATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIP 396 (695) Q Consensus 318 ~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~-~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP 396 (695) +..++...+.+.+...- ...+..+.+.. .+++.++. ++-++-+.+.+.+++...++...+.|...+++| T Consensus 274 ~~~~~~~~lv~~g~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p 343 (483) T protein:vir:12 274 FKDSNELTYVLTNYDDQ---ELPEFKRLLRY-------YGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAV 343 (483) T ss_pred HHHhcCceeeeecCCcc---cchhHHHhhhh-------ccccccCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCC Confidence 77777666655432211 11112121211 12222332 233344456777899999999999999999999 Q ss_pred ceeeeccCcccccCcchHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCCC--CceeEEeccccccchhHHHHH Q lcl|Aclame:pro 397 LIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAVD--PSIKWQWNALRELDDLEVAES 472 (695) Q Consensus 397 ~t~L~G~sp~Glnatge~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~~--~d~~~~f~pL~~~se~e~Aei 472 (695) -.-+ + +-+| |.||+.=..-|...+. ..++..++..|++++.+++. ..|..+ .++++.|++....+..+.+++ T Consensus 344 ~~~~-~-~~~~-n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~-~~~~~~~~~~i~v~f~~~~p~~~~~~a~~ 419 (483) T protein:vir:12 344 DFSS-D-KFGS-APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFE-HFDIKGEHKDVDISFNYNKVANTELQVQT 419 (483) T ss_pred CCCc-c-cccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCccceeeEEeCCCCCCCHHHHHHH Confidence 6433 2 2223 5567642222333322 44666789999999988764 334332 468899999888888888776 Q ss_pred HHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccc Q lcl|Aclame:pro 473 RYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATA 552 (695) Q Consensus 473 ~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (695) ..+. .|.++...+...+....+. ..+.. ....... ........................ .. T Consensus 420 ~~kl---------~GiiS~et~~~~~~~v~d~------~~E~~-ri~~E~~-~~~~~~~~~~~~~~d~~~~~~~~~--~~ 480 (483) T protein:vir:12 420 AQQS---------MGIVSHETVLENHPFVEDL------QAELE-RIEQEQM-EYNKQLPNLDDGGADGAQQQERSN--NK 480 (483) T ss_pred HHHH---------hccCchHHHHHhCCCCCCH------HHHHH-HHHHHHH-HHHhhcccccccccCCcccCCCCC--cc Confidence 5543 2566666654444321110 00000 0000000 000000000000000000000000 00 Q ss_pred hhh Q lcl|Aclame:pro 553 PPT 555 (695) Q Consensus 553 ~~~ 555 (695) ... T Consensus 481 e~e 483 (483) T protein:vir:12 481 ESE 483 (483) T ss_pred cCC Confidence 000 No 128 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=98.56 E-value=2.7e-07 Score=56.56 Aligned_cols=531 Identities=10% Similarity=-0.001 Sum_probs=202.2 Q ss_pred hhhccc-ccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCC--ch--HHHHHHH Q lcl|Aclame:pro 46 MGRRGA-LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFP--GF--PTLVLLA 120 (695) Q Consensus 46 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~--gy--~~~a~~~ 120 (695) |....+ -.+...++ ..+ ++-.+--.+..+-++... .|+...+.+ -| ..|+.++ T Consensus 1 ~~~~~~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~p~~~~~~L~~~~ 58 (651) T protein:vir:99 1 MTDTTGETQETKVHV-EGL--------------GGEADLAKSPNSTQIPDH-------RIQSHNVGVNPPYNPDRLAAFL 58 (651) T ss_pred CCCccceeeeeEEEe-ecc--------------cccccccccccccccchh-------hhcccCCCCCCCCCHHHHHHHH Confidence 332221 01111000 000 000000011111111100 111111111 11 1244454 Q ss_pred -hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh-----------hch----H Q lcl|Aclame:pro 121 -QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER-----------LRI----R 184 (695) Q Consensus 121 -~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~-----------l~~----~ 184 (695) +++..+++|++.+++..--|+++.-...-+ .....+++.++.+..++. ++. . T Consensus 59 e~~~~~~~~i~~~~~~iag~g~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~ 126 (651) T protein:vir:99 59 ELNETLATGIRKKSRYEVGFGFDLVPAQGVD------------GDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPE 126 (651) T ss_pred hcChHHHHHHHHHhhhhhccCceeeecccCC------------CCccchHHHHHHHHHhhccchhhcccccccCCCCCHH Confidence 699999999999999887777765322100 111222333333333322 111 1 Q ss_pred HHHHHHHHhcCccceEEEEEEEcCCC-------------------chhccccC----Cccccc------------cCcce Q lcl|Aclame:pro 185 DAVRTTVIHDQAFGRAHPYFKIKGDD-------------------QIMDTPLV----PRPYTV------------PKGSF 229 (695) Q Consensus 185 ~~~~~a~~~~Rl~G~~~i~i~~~~d~-------------------~~~~~Pl~----~~~~~i------------~~g~l 229 (695) ..+..++.....+|-+++=++..+.+ .....|+. ..|... ..+.. T Consensus 127 ~i~~~~~~Dle~tGna~ieiIrn~~g~pv~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~ 206 (651) T protein:vir:99 127 RVKELARQDYHGVGWLALEMLTDIEGRPVGLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNR 206 (651) T ss_pred HHHHHHHHHHHHHhhHhhhhhhcCccchhhhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCc Confidence 12222222222233333322211111 00011110 000000 00000 Q ss_pred EEEEEe-------------cchhccccceecccc---cccccCCceeEEEc------ceEEchhhEEEecCCcchhhhhc Q lcl|Aclame:pro 230 QGLRVV-------------EPYWVTPNNYNSINP---VADDFYKPSTWWMI------GTEVHATRLHTIVSRPVGDMLKP 287 (695) Q Consensus 230 ~~l~v~-------------d~~~i~p~~~~~~dp---~s~~yg~P~~y~i~------~~~iH~SRli~~~~~~~p~~~~~ 287 (695) .++.++ ....+.+. + ..|. ..+.+..+..+.+. ...+.++.||||.... + T Consensus 207 ~~~~~~g~~~~~~~~~~~~~~~~v~~~-~-~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~------~ 278 (651) T protein:vir:99 207 RYFGEAGDRYRGQEVVIDESGDEPTIR-Y-REDEESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPS------I 278 (651) T ss_pred ceEEEeeccccceeeeeccCCcceeEE-e-ccCcceeeeeecccceeeeEEEcCCCceeEecccceEEecCCC------C Confidence 011111 00001000 0 0011 11222333333321 2356778899887542 1 Q ss_pred ccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC- Q lcl|Aclame:pro 288 TYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA- 364 (695) Q Consensus 288 ~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~- 364 (695) .....|.|.++.+.+.|.....+......++..... .++++.. ..++.+..+.+.+.++. ...++...+++..+ T Consensus 279 ~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p~gil~~~~-~~ls~e~~~~lr~~~~~--~~~nagk~~vL~~~~ 355 (651) T protein:vir:99 279 LEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIPRMVIKVTG-GELSEESKRDLRQMLNG--LREESHRAVVLEVEK 355 (651) T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC-CCCCHHHHHHHHHHHHH--HhccCCceEEeeccc Confidence 234579999999999998888888887777666443 4444432 23555555556555553 23344444555321 Q ss_pred ---------CceeEEEecccC---ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 365 ---------TEEFFQFNTPLS---GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 365 ---------~e~~~~~~~~ls---gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~ 432 (695) +=+|+.++.+.+ .+-+........||++.+||-..| |...++-.|+.|...+.|+..+ |. T Consensus 356 ~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa~afgVPp~~l-G~~~~~~~sn~E~~~~~f~~~t-------L~ 427 (651) T protein:vir:99 356 FQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEIAKVLEVPPVKI-GVTDSANRSNSDQQDKDFALEV-------IQ 427 (651) T ss_pred ccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHHHHHhCCCHHHh-ccCCCCCcccHHHHHHHHHHHH-------HH Confidence 235666554332 344555667888999999997766 7665444456676677776544 67 Q ss_pred HHHHHHHHHHHHHhcCC--C--CCceeEEecc--ccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLSLFGA--V--DPSIKWQWNA--LRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPY 506 (695) Q Consensus 433 p~l~~l~~~l~~s~~g~--~--~~d~~~~f~p--L~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~ 506 (695) |.+..+-+.|-+..+.. . ...+.|+|+. |...+.+.+ ++....++..|+++.+|+|+.+...+.... T Consensus 428 P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~~llr~D~~~~-------~e~~~~~i~~G~~T~NE~R~~lglppi~~~ 500 (651) T protein:vir:99 428 PEQHTFAEWLYQIIHQQALGVTDWTIEYELRGADQPKQEAQLA-------EQRVRAMRLAGVGLVDEAREELGLDPLGEP 500 (651) T ss_pred HHHHHHHHHHHHhhcCccccccCceEEEEeccchhhhccHHHH-------HHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Confidence 77777666554443321 1 1234556654 444444433 566777889999999999988765432111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccc-cccccCCCccchhhhhhhhhcccccc--ccccCceEEEEEEEEE Q lcl|Aclame:pro 507 AGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTG-APGGARAGATAPPTVANVNANVKPRE--AGAQDAAMRAAGAVYV 583 (695) Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~ 583 (695) .... ........ .......+...... ......... ............... ....-.......+--+ T Consensus 501 ~gd~---~l~~~~~~------~~g~~~~gge~~~~~~~~~~~~~~--~~e~~~~~~~~~~~e~~~~~~v~ss~~~~~gyd 569 (651) T protein:vir:99 501 YGEM---TLSEFEAE------VAGDVAGGGETEAVHEPPEENKIG--EREWDTVKSELTTKDPIEQMQFSSSNLDEGLYD 569 (651) T ss_pred cccc---cccccccc------cccccccCCCCcccccCccccccc--cchhhhhhhhhcccchhhhhhHHHHHHHhhcCC Confidence 0000 00000000 00000000000000 000000000 000000000000000 0000000011112234 Q ss_pred cCCeEEEEEe-----CCCceeCCcceeCCCCCHHHHHHHHHHHh--cC----ceEeEEEEecCcc----cEEEEE---EE Q lcl|Aclame:pro 584 VDGKVLLMKR-----PAGDWGLPAGKVEGNETPEEAARRETREE--TG----YDHDGELVPLGKF----DGFFHA---FV 645 (695) Q Consensus 584 ~~~~vLL~~r-----~~g~W~lPGG~vE~gEs~~~aa~REv~EE--tG----l~v~~~~~~~~~~----~~~~~~---f~ 645 (695) ...++|-++= +.+.|.. -...+.+-++++.= .| -.|+ ..|++... ..+--. =. T Consensus 570 ~~~~~l~~~f~~~~~~~~~y~y--------~~v~~~~~~~~~~a~s~g~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~ 640 (651) T protein:vir:99 570 FGENELYLSFLRDEGQSSLYAY--------VDVPASEWSALANAGSHGGYHYDNIR-LEYPYLEITNFHDRLPEGPAPDA 640 (651) T ss_pred CccceEEEEEeecCCCCceeee--------eCCCHHHHHHHhcCcccceeehhccc-cccchhhhhhhhhhCCCCCCCCc Confidence 4556666652 1122211 11111112222111 11 0111 11111111 000000 00 Q ss_pred EEeeCCccccCchh Q lcl|Aclame:pro 646 AHLEPFDVELNDEH 659 (695) Q Consensus 646 ~~~~~~~~~~~~E~ 659 (695) ..+.+|- ++|+ T Consensus 641 ~~~~~~~---~~~~ 651 (651) T protein:vir:99 641 GDVPDGV---PDEI 651 (651) T ss_pred CCCCCCC---cccC Confidence 0111111 1122 No 129 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=98.56 E-value=2.8e-07 Score=56.51 Aligned_cols=420 Identities=13% Similarity=0.073 Sum_probs=166.8 Q ss_pred ccccchhhhhhhcccccCCCCcccccccccccccccccchhh-hhhhccCCCCchHHHHHHHh--C-------------- Q lcl|Aclame:pro 60 VAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDA-LSFVTSSGFPGFPTLVLLAQ--L-------------- 122 (695) Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~gy~~~a~~~~--~-------------- 122 (695) .++|-+.. ........ .... +..+ ......|..+..|+. | T Consensus 1 ~~~~i~~~-------------~~~~~~~~---------~~~~L~~~~-~~~~~r~~~~~~YY~G~~~i~~~~~~~~~~~~ 57 (485) T protein:vir:24 1 MTAPLPGQ-------------EEIADPAI---------ARDEMVSAF-EDQNQNLRSNTSYYEAERRPEAIGVTVPVQMQ 57 (485) T ss_pred CCCCCCCC-------------CcccchHH---------HHHHHHHHH-HHHHHHHHHHHHHHhccCchhhcCcccchhhh Confidence 22221111 00000000 0000 0000 001122222222221 2 Q ss_pred ------hhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCc Q lcl|Aclame:pro 123 ------PEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQA 196 (695) Q Consensus 123 ------~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl 196 (695) ...++|||..++=++ -.||++. .+.+..+.+.+.+++-++.....++.+.+-. T Consensus 58 ~~~~~~n~~~~ivd~~~~~l~---------------~~g~~~~------~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~i 116 (485) T protein:vir:24 58 SLLAHVGYPRLYVDSIAERQA---------------VEGFRLG------DADEADEELWQWWQANNLDIEAPLGYTDAYV 116 (485) T ss_pred hhhhccchHHHHHHHHhhhhc---------------cCceecC------CCchhHHHHHHHHHhcChhHHHHHHHHHHhh Confidence 223444444332221 2344332 2333445567777777778888999998889 Q ss_pred cceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecc--cccc-------cccCCce-------- Q lcl|Aclame:pro 197 FGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSI--NPVA-------DDFYKPS-------- 259 (695) Q Consensus 197 ~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~--dp~s-------~~yg~P~-------- 259 (695) ||.+++++..+.+.... .+ .++. ..|++++|.++.+. |+.. .+.. .+.+... T Consensus 117 ~G~ay~~v~~~~~~~~~---~~------~~~~-~~i~~~~p~~~~~i-~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 185 (485) T protein:vir:24 117 HGRSYITISRPDPQIDL---GW------DPNV-PLIRVEPPTRMYAE-IDPRIGRPAKAIRVAYDAEGNEIQAATLYTPN 185 (485) T ss_pred cCceEEEEecCCccccc---cc------CCCc-ceEEEeccceeEEE-eeCCcCceeEEEEEEEeecCCeEEEEEEEcCC Confidence 99999998775543211 00 0111 12444555544432 1100 0000 0001111 Q ss_pred -eEEE---cce------EEchhhE---EEecCCcchhhhhcccCCCCchHHHH-HHHHHHHHHHHhHHHHHHHHHhccce Q lcl|Aclame:pro 260 -TWWM---IGT------EVHATRL---HTIVSRPVGDMLKPTYSFAGISMTQL-AMPYIDNWLRTRQSVSDIVKQFSVSG 325 (695) Q Consensus 260 -~y~i---~~~------~iH~SRl---i~~~~~~~p~~~~~~~~~~G~S~l~~-~~~~l~~~~~~~~~~~~l~~~~~~~v 325 (695) .|++ .|. .-|.--. +.|...+ .....+|.|.+.. +.+.+.+++++.......+..++... T Consensus 186 ~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~------~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~ 259 (485) T protein:vir:24 186 ETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRT------RLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQ 259 (485) T ss_pred cEEEEEecCCceEeecccccCCCcccEEEeccCc------ccCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchh Confidence 1111 111 0122111 1111111 1123479998874 67777788888766555554444332 Q ss_pred eeechHH--hhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEe-cccCChHHHHHHHHHHHHhhhcCCceeeec Q lcl|Aclame:pro 326 ILMDLAQ--ALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLG 402 (695) Q Consensus 326 ~k~~~~~--~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L~G 402 (695) +.+.+.. ......+.. ...++. .+..+.++.+++-++.+++ .++....+.+.....++|+.+++|..-|-| T Consensus 260 ~~i~G~~~~~~~~~~~~~----~~~~~~--~~~~i~~~~~~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~ 333 (485) T protein:vir:24 260 RLIFGIKPEEIGVDPETG----QTLFDA--YLARILAFEDAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLST 333 (485) T ss_pred hhhccCCccccccccccc----cchhhh--cccceeccCCCCceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhcc Confidence 2222111 111111100 111111 1222334432333343332 223345555666688899999999888843 Q ss_pred cCccccc-CcchHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHhc-CCCC---CceeEEeccccccchhHHHHHHH Q lcl|Aclame:pro 403 ITPTGLN-ASSEGEIRVWYDYVR---AYQRNALQQLMNDVIVMIQLSLF-GAVD---PSIKWQWNALRELDDLEVAESRY 474 (695) Q Consensus 403 ~sp~Gln-atge~D~~nyyd~i~---~~Qe~~l~p~l~~l~~~l~~s~~-g~~~---~d~~~~f~pL~~~se~e~Aei~~ 474 (695) +. -| +||+ .++.-+..+. ..++..+.+.|++++.+++.-.. ...+ .++.+.|.+....+..+.++... T Consensus 334 -~~--~n~~Sg~-Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~ 409 (485) T protein:vir:24 334 -AA--DNPASAE-AIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKGGDVPPDMLRMETVWRDPSTPTYAAKADAAT 409 (485) T ss_pred -cc--CcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeEEecCCCCCCHHHHHHHHH Confidence 32 33 5666 4443333332 33556688999999988764322 2222 36889999999999888876555 Q ss_pred HHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchh Q lcl|Aclame:pro 475 KQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPP 554 (695) Q Consensus 475 ~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (695) +.+++. .|.++...+...+... .... .................. ................. .. T Consensus 410 kl~~~g-----~~~~s~et~~~~l~~~------~d~~-~e~~~~~ee~~~~~~~~~-~~~~~~~~~~~~~~~~~----e~ 472 (485) T protein:vir:24 410 KLYGNG-----QGVIPRERARKDMGYS------IAER-EEMRRWDEEEAAMGLGLL-GTMVDADPTVPGSPNPT----PA 472 (485) T ss_pred HHHhcc-----cccCCHHHHHhhCCCC------HhHH-HHHHHHHHHHhhhhhhHH-HhhcccCCCCCCCCCCC----CC Confidence 543321 2345554444333211 1110 000000000000000000 00000000000000000 00 Q ss_pred hhhhhhhccccccc Q lcl|Aclame:pro 555 TVANVNANVKPREA 568 (695) Q Consensus 555 ~~~~~~~~~~~~~~ 568 (695) ........ ..... T Consensus 473 ~~~~~~~~-~~~~a 485 (485) T protein:vir:24 473 PKPQPAIE-GGDSA 485 (485) T ss_pred CCCccCCC-CCCCC Confidence 00000000 00000 No 130 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=98.56 E-value=2.9e-07 Score=56.45 Aligned_cols=423 Identities=9% Similarity=-0.006 Sum_probs=177.7 Q ss_pred CCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCC------- Q lcl|Aclame:pro 38 AAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGF------- 110 (695) Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f------- 110 (695) .-|..+..-.+++..... ......+-+....+. ..+.. ...+-.....+|.+..= T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~i--------~~~~~------~~~~~~~~~~YY~g~~~i~~~~~~ 62 (472) T protein:vir:93 1 MYPSQPTQTEIFDAIVRT----NNKPETLEEMIVRYI--------KQHLE------KLPEISIGQEYYEQRPDIVKEPKP 62 (472) T ss_pred CCCCCCcchhhhhceeee----cCchhhHHHHHHHHH--------HHHHH------HHHHHHHHHHHhccccccccccch Confidence 000000000000000000 000000000000000 00000 00000000011111000 Q ss_pred --Cch---HHHHHHH-hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchH Q lcl|Aclame:pro 111 --PGF---PTLVLLA-QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIR 184 (695) Q Consensus 111 --~gy---~~~a~~~-~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~ 184 (695) ..+ ...+..+ .+.+.+.||+..+.=++-+.+.+. ..+.+..+.|+..++. ++. T Consensus 63 ~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--------------------~~d~~~~~~l~~~~~n-~~~ 121 (472) T protein:vir:93 63 VDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--------------------HTDDEVVKRIDEVLGN-RFD 121 (472) T ss_pred hhccccccccccccccccchHHHHHHHHhhhhcccCeeec--------------------cCChHHHHHHHHHHhc-cHH Confidence 000 0000001 134555555555544433333331 2344555666666554 778 Q ss_pred HHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccc--------------eecccc Q lcl|Aclame:pro 185 DAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNN--------------YNSINP 250 (695) Q Consensus 185 ~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~--------------~~~~dp 250 (695) ..+.++.+.+-.||.+++++.++.++... +.+++|.++.|.. +...+- T Consensus 122 ~~~~~~~~~~~~~G~~~~~v~~d~d~~~~------------------i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~ 183 (472) T protein:vir:93 122 DKLHSVLTGASNKGIEWLHPYLDEEGEFK------------------LFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE 183 (472) T ss_pred HHHHHHHHHHhhcCeEEEEEEECCCCceE------------------EEEEcccceEEEEcCCCCCceEEEEEEEEeecc Confidence 88889988888999999998876554311 2223333332210 000000 Q ss_pred cccccCCc---eeEEEcceE-------------EchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHH Q lcl|Aclame:pro 251 VADDFYKP---STWWMIGTE-------------VHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSV 314 (695) Q Consensus 251 ~s~~yg~P---~~y~i~~~~-------------iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~ 314 (695) ..-.++.+ .+|...+.. +|.. -.-|. .+|-. .-.++-+|.|.++.+.+.+.+++.+.... T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~vPvv-~~~nn~~g~s~~e~v~~liDa~~~~~s~~ 259 (472) T protein:vir:93 184 TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFS-TGSWG--KIPFI-PFKNNDLEISDIFMYKTLIDAYNRRLSDL 259 (472) T ss_pred eeEEEEecCeEEEEEEecCeeeecccccccccccccc-cCCCC--CcceE-EecCCCCCCCchhhhHHHHHHHHHHHHHH Confidence 00011111 111111100 0000 00000 11111 11235679999999999999999998888 Q ss_pred HHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEE--EecccCChHHHHHHHHHHHHhh Q lcl|Aclame:pro 315 SDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQ--FNTPLSGLDALQAQAQEQMSAV 392 (695) Q Consensus 315 ~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~--~~~~lsgl~~~~~~~~~~iaaa 392 (695) +..+..++...+.+.+..... ..+..+.+. ..+++.++. +.+.+. .+.+.+++...++.+.+.|... T Consensus 260 ~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~-------~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~ 328 (472) T protein:vir:93 260 SNTFKDSNELTYVLTNYDDQE---LPEFKRLLR-------YYGAIKVSD-NGGVDTIQVEVPVENSKKYLDELYQKIMLF 328 (472) T ss_pred HHHHHHhcCceeEeecCCccc---chhhHHHHh-------hccccccCC-CCcceeEeecCCHHHHHHHHHHHHHHHHHH Confidence 888877777766654332111 111211111 112333432 444444 4667789999999999999999 Q ss_pred hcCCceeeeccCcccccCcchHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCCC--CceeEEeccccccchhH Q lcl|Aclame:pro 393 SHIPLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAVD--PSIKWQWNALRELDDLE 468 (695) Q Consensus 393 s~iP~t~L~G~sp~Glnatge~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~~--~d~~~~f~pL~~~se~e 468 (695) +++|-.-+ + +- |=|.||+.=...|...+. ..++..+...|++++.+++. ..|... .++++.|++....+..+ T Consensus 329 s~~p~~~~-~-~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~-~~~~~~~~~~i~v~f~~~~p~~~~~ 404 (472) T protein:vir:93 329 GQAVDFSS-D-KF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFE-HFDIKGEHKDVDISFNYNKVANTEL 404 (472) T ss_pred hCCCCCCc-c-cc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcccceeeEEeCCCCCCCHHH Confidence 99996533 2 11 224566632223333322 34566688999999888764 344333 47889999988888888 Q ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCC Q lcl|Aclame:pro 469 VAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARA 548 (695) Q Consensus 469 ~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (695) .+++..+. .|.++...+...+....+. ..+....... . ..... .... .... .... T Consensus 405 ~~~~~~k~---------~giis~et~l~~l~~~~d~------~~E~~ri~~E-~-~~~~~-~~~~----~~~~---~~d~ 459 (472) T protein:vir:93 405 QVQTAQQS---------MGIVSHETVLENHPFVEDL------QAELERIEQE-Q-MEYNK-QLPN----LDDG---GADG 459 (472) T ss_pred HHHHHHHH---------hccCchHHHHHhCCCCCCH------HHHHHHHHHH-H-HHHHH-hccC----cCcc---cCCC Confidence 87665553 2556655554444221110 0000000000 0 00000 0000 0000 0000 Q ss_pred Cccchhhhhhhhhccc Q lcl|Aclame:pro 549 GATAPPTVANVNANVK 564 (695) Q Consensus 549 ~~~~~~~~~~~~~~~~ 564 (695) .. ......... .. T Consensus 460 ~~-~~~~~~~~~--~e 472 (472) T protein:vir:93 460 AQ-QQERSNNKE--SE 472 (472) T ss_pred CC-CCCCCCccc--CC Confidence 00 000000000 00 No 131 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=98.56 E-value=2.9e-07 Score=56.40 Aligned_cols=459 Identities=10% Similarity=0.019 Sum_probs=207.8 Q ss_pred cCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHH Q lcl|Aclame:pro 37 TAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTL 116 (695) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~ 116 (695) +.+|..|+...-... .+ ...+.... -++.+.+. ...+......+.+.. +... . .-+-=... T Consensus 1 ~~~p~~~~~~~~~~~----------~~---~~~~~~y~--~~a~~~~~-~~~~w~p~~~s~~~~-~~~~-~-~~lr~RaR 61 (533) T protein:vir:34 1 MKTPTIPTLLGPDGM----------TS---LREYAGYH--GGGSGFGG-QLRSWNPPSESVDAA-LLPN-F-TRGNARAD 61 (533) T ss_pred CCCchhhhhhccccc----------ch---HHHHHhhh--hccCCCCC-cccccccCCCCHHHH-HHHH-H-HHHHHHHH Confidence 555544442111000 00 01111000 00000010 011111111111110 1100 0 00000123 Q ss_pred HHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhh--------------c Q lcl|Aclame:pro 117 VLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL--------------R 182 (695) Q Consensus 117 a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l--------------~ 182 (695) .+++.|++++.+|+......+=.|++....+....+ |+ ..+.+.+..+.|+++|++. . T Consensus 62 dl~rNn~~a~~av~~~~~nvVG~Gi~~~~~p~~~~l--g~------~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~ 133 (533) T protein:vir:34 62 DLVRNNGYAANAIQLHQDHIVGSFFRLSHRPSWRYL--GI------GEEEARAFSREVEAAWKEFAEDDCCCIDVERKRT 133 (533) T ss_pred HHHhcChHHHHHHHHHHHHhhCCCceeeeccchhhc--CC------ChhHHHHHHHHHHHHHHHhhcCccceeccccccC Confidence 456679999999998887777667776554433222 11 1122334445566665432 2 Q ss_pred hHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceeccc-------cccccc Q lcl|Aclame:pro 183 IRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSIN-------PVADDF 255 (695) Q Consensus 183 ~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~d-------p~s~~y 255 (695) +-+....+++..-.-|-+++.+....+. ...-| + .|.++++..|.-. ++..+ ..--.+ T Consensus 134 f~~~q~l~~r~~~~dGE~f~~~~~~~~~-g~~~~------------~-~lq~ie~d~l~~~-~~~~~~~~i~~GIe~d~~ 198 (533) T protein:vir:34 134 FTMMIREGVAMHAFNGELFVQATWDTSS-SRLFR------------T-QFRMVSPKRISNP-NNTGDSRNCRAGVQINDS 198 (533) T ss_pred HHHHHHHHHHHHHhCCceEEEeeeccCC-CCccc------------e-EEEEechhhcCCC-CCCCCCCceEeeeEECCC Confidence 2233344445333346665555443221 11111 1 3667777776422 11100 111357 Q ss_pred CCceeEEEcc-----------------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH--H Q lcl|Aclame:pro 256 YKPSTWWMIG-----------------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS--D 316 (695) Q Consensus 256 g~P~~y~i~~-----------------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~--~ 316 (695) |+|..|+|.. ..|+.++|||+-...-|. +--|+|.+-+++..+.+++.-..+-- . T Consensus 199 Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~VlH~f~~~r~g------Q~RGis~lapvl~~l~~l~~y~dael~~a 272 (533) T protein:vir:34 199 GAALGYYVSEDGYPGWMPQKWTWIPRELPGGRASFIHVFEPVEDG------QTRGANVFYSVMEQMKMLDTLQNTQLQSA 272 (533) T ss_pred CCeEEEEEeecCCCCccccccceeeeeeccChhHeeeeccccCCC------cccCCchHHHHHHHHHHHHHHHHHHHHHH Confidence 9999998841 236777877665443333 34699999999999998877765432 2 Q ss_pred HHHHhccceeeechHH-----hhcc----hHHHHHHHHHHHHHH------hcCCceeEEEEcCCceeEEEecc--cCChH Q lcl|Aclame:pro 317 IVKQFSVSGILMDLAQ-----ALMP----GANVDLSMRAELINR------YRDNRNILFLDKATEEFFQFNTP--LSGLD 379 (695) Q Consensus 317 l~~~~~~~v~k~~~~~-----~l~~----~~~~~l~~r~~~~~~------~~~n~~~~~ld~~~e~~~~~~~~--lsgl~ 379 (695) .+...-..++|.+... .+.+ +....+......... ..-.-|++..-..+|+++.++.+ -++.. T Consensus 273 ~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~ 352 (533) T protein:vir:34 273 IVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQTAQDTDNGYS 352 (533) T ss_pred HHhhhheeeeecCCCcccccccccCCCcccccccccccchhhhhccCcceeeccCceeeecCCCCeeeecCCCCCCCCHH Confidence 3333334455544221 1111 111111111111000 01123444433467889988755 46899 Q ss_pred HHHHHHHHHHHhhhcCCceeeeccCccccc-CcchHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhcCCCCC-- Q lcl|Aclame:pro 380 ALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGEIRVWYDYVRAYQRNALQ----QLMNDVIVMIQLSLFGAVDP-- 452 (695) Q Consensus 380 ~~~~~~~~~iaaas~iP~t~L~G~sp~Gln-atge~D~~nyyd~i~~~Qe~~l~----p~l~~l~~~l~~s~~g~~~~-- 452 (695) +.+..+...||+..|||...|.|- .++-| ||.-..+..+...++.+|...+. |+.+.+++..+++.-..+|. T Consensus 353 ~f~~~~lr~iAaglGi~ye~lt~D-~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~ 431 (533) T protein:vir:34 353 VFEQSLLRYIAAGLGVSYEQLSRN-YAQMSYSTARASANESWAYFMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKA 431 (533) T ss_pred HHHHHHHHHHHhhcCCCHHHHhhh-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcc Confidence 999999999999999999999995 33444 44555777888999999987654 44455555444432222232 Q ss_pred --c--------eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 453 --S--------IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADD 522 (695) Q Consensus 453 --d--------~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~ 522 (695) + +...|.+.--+.-. -.|.+++....+.+|..+..++......+.............. ... . T Consensus 432 ~~~~~~~~~~~~~~~w~~p~~~~iD-----P~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~ev~~q~a~e~~~--~~~-~ 503 (533) T protein:vir:34 432 RFSFQEARSAWGNCDWIGSGRMAID-----GLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRETME--RRA-A 503 (533) T ss_pred CCCchhhHHhhhceeeccCCccccC-----hHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHH--HHh-c Confidence 1 12344332222111 1345677788888999888877665544433222111100000 000 0 Q ss_pred hhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccc Q lcl|Aclame:pro 523 DIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREA 568 (695) Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (695) .... ....................... .. . T Consensus 504 gl~~---------~~~~~~~~~s~~~~~~~~~~~~~-~~------~ 533 (533) T protein:vir:34 504 GLKP---------PAWAAAAFESGLRQSTEEEKSDS-RA------A 533 (533) T ss_pred CCCC---------CCCCCcCccCCCCCCCCCCcccC-CC------C Confidence 0000 00000000000000000000000 00 0 No 132 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=98.55 E-value=3e-07 Score=56.34 Aligned_cols=420 Identities=13% Similarity=0.076 Sum_probs=164.6 Q ss_pred CCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHH----------------------hChhhhhHhhcchH Q lcl|Aclame:pro 77 VSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLA----------------------QLPEYRAMHEVLAD 134 (695) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~----------------------~~~~~r~~v~~~a~ 134 (695) +.+..+.......-... .+. ..... ...-..|..+..|+ -+...++|||+.++ T Consensus 1 ~~~~i~~~~~~~~~~~~---~~~-l~~~~-~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~ 75 (485) T protein:vir:10 1 MTAPLPGQEEIEDPAIA---RDE-MVSAF-EDSTQNLKTNTSYYEAERRPEAIGVTVPIQMQSLLAHVGYPRLYVDSIAE 75 (485) T ss_pred CCCCCCCCCCCCCHHHH---HHH-HHHHH-HHHHHHHHHHHHHHhcCCcchhcCCCCChhhhhhhhhcCcHHHHHHHHHh Confidence 11111111111000000 000 00000 00011122222222 11233555555443 Q ss_pred HHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhc Q lcl|Aclame:pro 135 ECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMD 214 (695) Q Consensus 135 d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~ 214 (695) -++ -.||++. .+.+..+.+.+.|++-++.....++.+.+-.||.|++++..+.+.. T Consensus 76 ~l~---------------~~g~~~~------~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~--- 131 (485) T protein:vir:10 76 RQA---------------VEGFRFG------DADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQI--- 131 (485) T ss_pred hhc---------------ccceecC------CCchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCccc--- Confidence 332 2233322 2334445677778887888889999998889999998877643321 Q ss_pred cccCCccccccCcceEEEEEecchhccccceeccc-cc---------------ccccCCcee-EEE---cce------EE Q lcl|Aclame:pro 215 TPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSIN-PV---------------ADDFYKPST-WWM---IGT------EV 268 (695) Q Consensus 215 ~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~d-p~---------------s~~yg~P~~-y~i---~~~------~i 268 (695) ++..+ ++. ..|++++|.++.+..-...+ +. ...++.|.. |.+ .+. .- T Consensus 132 -~~~~~-----~~~-~~i~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 204 (485) T protein:vir:10 132 -DLGWD-----PNT-PIIRVEPPTRMYAEIDPRIGRVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNP 204 (485) T ss_pred -ccccC-----CCe-eEEEEEccceeEEEEcCCCCceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEecccc Confidence 11100 111 13555566555432100000 00 000111100 000 000 00 Q ss_pred chhhE---EEecCCcchhhhhcccCCCCchHHHH-HHHHHHHHHHHhHHHHHHHHHhccceeeechH--HhhcchHHHHH Q lcl|Aclame:pro 269 HATRL---HTIVSRPVGDMLKPTYSFAGISMTQL-AMPYIDNWLRTRQSVSDIVKQFSVSGILMDLA--QALMPGANVDL 342 (695) Q Consensus 269 H~SRl---i~~~~~~~p~~~~~~~~~~G~S~l~~-~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~--~~l~~~~~~~l 342 (695) |.--. +.|. +.. .....+|.|.++. +...+.+++++..........++.....+.+. .......+.. T Consensus 205 ~~~g~vPvv~~~-----n~~-~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~- 277 (485) T protein:vir:10 205 HGLGVVPVVPIP-----NRT-RLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETG- 277 (485) T ss_pred CCCCcccEEEec-----ccc-ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCccccccccccc- Confidence 11111 1111 111 1123579998875 66667777777655544443333322221111 1111110000 Q ss_pred HHHHHHHHHhcCCceeEEEEcCCceeEEEe-cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc-CcchHHHH--- Q lcl|Aclame:pro 343 SMRAELINRYRDNRNILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGEIR--- 417 (695) Q Consensus 343 ~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln-atge~D~~--- 417 (695) ...++.. ...+.++.+++.+|-+++ +++.+..+.+.....++|+.+++|...|-| + +-| +||+.=.. T Consensus 278 ---~~~~~~~--~~~i~~~~~~d~k~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~-~--~~n~~Sg~Al~~~~~ 349 (485) T protein:vir:10 278 ---QTLFDAY--LARILAFEDAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLST-A--ADNPASAEAIRAAES 349 (485) T ss_pred ---chhhhhc--ccceeccCCCCceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhcc-c--cCchhHHHHHHHHHH Confidence 1111111 122333332333443433 233445666667788899999999998744 3 233 56663222 Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhcC-CCC---CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhh--cchh Q lcl|Aclame:pro 418 VWYDYVRAYQRNALQQLMNDVIVMIQLSLFG-AVD---PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQ--VIRP 491 (695) Q Consensus 418 nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g-~~~---~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g--~i~~ 491 (695) .....++. ++..+.+.|++++.+++.-..+ ..+ .++.+.|.+....+..+.++...+ ++.+| .++. T Consensus 350 ~l~~k~~~-k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~~~~~~ada~~k-------l~~ag~~~~s~ 421 (485) T protein:vir:10 350 RLIKKVER-KNSIFGGAWEEAMRLAYRMMKGGDVPPDMLRMETVWRDPSTPTYAAKADAASK-------LYNGGTGVIPR 421 (485) T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCCcccceeeeEEecCCCCCCHHHHHHHHHH-------HHhccccCCCH Confidence 22223333 4456788999988877543322 222 257789999888888887665544 33333 5555 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccc Q lcl|Aclame:pro 492 DQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREA 568 (695) Q Consensus 492 ~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (695) ..+...+..... . ........................ ......-.. .................. T Consensus 422 et~~~~lg~~~~------~-~~~~~~~~ee~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 485 (485) T protein:vir:10 422 ERARKDMGYSIA------E-REEMRRWDEEEAAMGLGLIGTMVD-PNPTVPGSP-----SPAPAPKPAALESGGDAA 485 (485) T ss_pred HHHHHhCCCCHh------H-HHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCC-----CccccccCcCCCCCCCCC Confidence 555444322111 0 011000000000000000000000 000000000 000000000000000000 No 133 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=98.54 E-value=3.3e-07 Score=56.14 Aligned_cols=406 Identities=9% Similarity=0.024 Sum_probs=180.9 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccccccccccc--ccccchhhhhhhcc--CCC-CchHHHHHHH Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALD--FNGTSMDALSFVTS--SGF-PGFPTLVLLA 120 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~f-~gy~~~a~~~ 120 (695) |.--+..+....+. ..|-+. -.........+... ... .-|..+..|+ T Consensus 1 ~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy 52 (470) T protein:vir:99 1 MKDINYGRDKVTGN----------------------------SSFIFPKGEKLTSNELLGFIAYNETVLKPRYRENMKLY 52 (470) T ss_pred CccccCCcccccCC----------------------------ceEEeCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHh Confidence 22211111000000 000000 00000000000000 000 0122222222 Q ss_pred h--------------------ChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 121 Q--------------------LPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER 180 (695) Q Consensus 121 ~--------------------~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 180 (695) . +.+.++||+..+.=++.+.+.+. ...+.+..+.|.+.+++ T Consensus 53 ~g~~~i~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~-------------------~~~d~~~~~~l~~~~~~ 113 (470) T protein:vir:99 53 LGKHKILTAPEKETGADNRIVVNSAKYVVDVYNGYFCGIEPKLA-------------------LLNDSSKIDEIARWNRQ 113 (470) T ss_pred ccccccccCcccccCCcceeecchHHHHHHHHhhhhccCCeeEe-------------------eCCchhHHHHHHHHHHh Confidence 1 23445555544443333333321 22334455678888888 Q ss_pred hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCcee Q lcl|Aclame:pro 181 LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPST 260 (695) Q Consensus 181 l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~ 260 (695) -++...+.++.+.+-.||.+++++.++.++.. .+.+++|.++.|..-+..+. .+.++ -.+ T Consensus 114 n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~------------------~i~~~~p~~~~~i~d~~~~~-~~~~~-vr~ 173 (470) T protein:vir:99 114 ENFFDTINEISKQCDIFGRSIASIYQGEDARP------------------HLMYSSPNHAFIIYDDTVQR-QPLAF-VHY 173 (470) T ss_pred cCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeE------------------EEEEEccceeEEEEcCCCCc-ceEEE-EEE Confidence 89999999999999999999999887554321 13344444444321110000 00010 001 Q ss_pred EEEcc-------e-EEchhhEEEecCC-----------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH Q lcl|Aclame:pro 261 WWMIG-------T-EVHATRLHTIVSR-----------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 315 (695) Q Consensus 261 y~i~~-------~-~iH~SRli~~~~~-----------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~ 315 (695) |...+ . -....++..|.+. .+|-. .-.++-+|.|.++.+.+-+.+++.+....+ T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~sd~e~v~~liDa~~~~~s~~~ 252 (470) T protein:vir:99 174 QIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAV-EFFENEERQGIFDSIKTLINALDKVISQKA 252 (470) T ss_pred EEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceE-eecCCCCCCcchHhHHHHHHHHHHHHHHHH Confidence 11100 0 0011122221110 01111 012355799999999999999999988888 Q ss_pred HHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEE----cCCceeEEE--ecccCChHHHHHHHHHHH Q lcl|Aclame:pro 316 DIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLD----KATEEFFQF--NTPLSGLDALQAQAQEQM 389 (695) Q Consensus 316 ~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld----~~~e~~~~~--~~~lsgl~~~~~~~~~~i 389 (695) ..+..++...+.+.+...-..+..+.+ ..++.+ +++.+. .++.+++.+ +.+..++...++...+.| T Consensus 253 ~~~~~~~~~~~~i~g~~~~~~~~g~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 324 (470) T protein:vir:99 253 NQVEYFDNAYMYMIGFKLPEDDEGNPK-------FDFKNN-RVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFI 324 (470) T ss_pred HHHHHhcCceeeeecCCcccccccchh-------hhhhhc-ceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHH Confidence 877777666666554322111111111 111222 233332 123345555 455678899999999999 Q ss_pred HhhhcCCceeeeccCcccccCcchHHHHH-HHHHH--HHHHhhhhhHHHHHHHHHHHHHh--cCCCC---CceeEEeccc Q lcl|Aclame:pro 390 SAVSHIPLIKLLGITPTGLNASSEGEIRV-WYDYV--RAYQRNALQQLMNDVIVMIQLSL--FGAVD---PSIKWQWNAL 461 (695) Q Consensus 390 aaas~iP~t~L~G~sp~Glnatge~D~~n-yyd~i--~~~Qe~~l~p~l~~l~~~l~~s~--~g~~~---~d~~~~f~pL 461 (695) ...+++|-.- ++.. +| |.||+. ++. |.... ...++..++..|.+++.+++.-. .+..+ .++++.|+|- T Consensus 325 ~~~s~~p~~~-~~~~-~~-n~Sg~A-i~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~ 400 (470) T protein:vir:99 325 FMMAMVPNIQ-DKNF-AG-NSSGVA-LQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELWSELDFKFTRN 400 (470) T ss_pred HHHhCCcccc-cccc-cc-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccceEEeCCC Confidence 9999999543 3321 22 456663 332 22222 23355678999999888775432 22222 3689999999 Q ss_pred cccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccc Q lcl|Aclame:pro 462 RELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTG 541 (695) Q Consensus 462 ~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (695) ...+..+.+++..+.+ |.++...+...+.. .. ...+........ ............ .. T Consensus 401 ~p~~~~e~a~~~~kl~---------giis~et~l~~l~~------vd--~~~E~eri~~E~-~~~~~~~~~~~~----~~ 458 (470) T protein:vir:99 401 LPEDMASAIDNAKNAE---------GIVSKKTQLGMIPD------IE--PDAEMKQIAKEK-ADAIKQTQQLSM----PI 458 (470) T ss_pred CCcCHHHHHHHHHHHh---------ccCCHHHHHHhCCC------CC--HHHHHHHHHHHH-HHHHHHHHhhcC----CC Confidence 9999988887655432 55665554443321 10 000000000000 000000000000 00 Q ss_pred cccccCCCccchhh Q lcl|Aclame:pro 542 APGGARAGATAPPT 555 (695) Q Consensus 542 ~~~~~~~~~~~~~~ 555 (695) ........ .... T Consensus 459 d~~~~d~~--~ee~ 470 (470) T protein:vir:99 459 DILKRDNN--AEEE 470 (470) T ss_pred CcCCCCCC--ccCC Confidence 00000000 0000 No 134 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=98.53 E-value=3.4e-07 Score=56.05 Aligned_cols=394 Identities=10% Similarity=0.018 Sum_probs=180.6 Q ss_pred ccccccccccccchhhhhhhcccccCCCCcccccccccccccccccch-h-hhhhhccCCCCch------------HHHH Q lcl|Aclame:pro 52 LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSM-D-ALSFVTSSGFPGF------------PTLV 117 (695) Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~f~gy------------~~~a 117 (695) .. .+....+.-. + .....+ . ...+|.+..-+-+ ...+ T Consensus 1 l~-------------~~~i~~~i~~--------~--------~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~ 51 (451) T protein:vir:10 1 ME-------------LEKIRAIISA--------D--------AARRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNA 51 (451) T ss_pred CC-------------HHHHHHHHHH--------H--------HHHHHHHHHHHHHhcccCcccccccccccccccccccc Confidence 00 0000000000 0 000000 0 0000110000000 0000 Q ss_pred HHH-hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCc Q lcl|Aclame:pro 118 LLA-QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQA 196 (695) Q Consensus 118 ~~~-~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl 196 (695) ..+ .+.+++.||+..+.=++-+-+.+ ..+.+.+..+.++. +.+=++...+.++.+.+-. T Consensus 52 ~~ki~~n~~~~Ivd~~~~yl~G~p~~~-------------------~~~~~~~~~~~~~~-~~~n~~~~~~~~~~~~~~~ 111 (451) T protein:vir:10 52 DNRISHNFHEILVDEKASYMFTYPVLF-------------------DIDNNKELNEKVTD-VLGNEFTRKAKNLAIEASN 111 (451) T ss_pred ccccccchHHHHHHhhhhheeccccee-------------------ecCCcHHHHHHHHH-HhccCHHHHHHHHHHHHhh Confidence 001 13445555555443222111111 12233344444443 3334678888898898989 Q ss_pred cceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--------c--- Q lcl|Aclame:pro 197 FGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--------G--- 265 (695) Q Consensus 197 ~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--------~--- 265 (695) ||.++.++.++.+... ..| .+|.+ .+.+++|.++.|...+..+ ..+.+.- .+|... + T Consensus 112 ~G~a~~~~y~de~~~~-~~~--------~~~~~-~~~~i~p~~~~~vydd~~~-~~~~~~i-r~~~~~~~~~~~~~~~~~ 179 (451) T protein:vir:10 112 CGSAWLHYWIDEEYSG-EQV--------TNQTF-KYGVVNTEEIIPIYRNGIE-RELEAVI-RYYIQLEDVKGQIQKQAY 179 (451) T ss_pred cCeEEEEEeecCCccc-ccc--------cccce-eEEEEcccceEEEEcCCCC-CceEEEE-EEEEeeecccccccceEE Confidence 9999999888644321 111 12233 2566777776654211100 0111110 011110 0 Q ss_pred --eEEc-hhhEEEecC---C---------cchhh------hhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc Q lcl|Aclame:pro 266 --TEVH-ATRLHTIVS---R---------PVGDM------LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS 324 (695) Q Consensus 266 --~~iH-~SRli~~~~---~---------~~p~~------~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~ 324 (695) ..++ ..++..+.. . +.|+. ..-.++-.|.|.++.+.+-+.+++.+....+..+..++.. T Consensus 180 ~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~ 259 (451) T protein:vir:10 180 TYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSNNIKKQSDLSKYKKILDLYDRVMSGFANDLEDIQQI 259 (451) T ss_pred EEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEeccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhccc Confidence 0111 122222210 0 00100 0011344588999999999999999988888888877777 Q ss_pred eeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEc------CCceeEEEecccCChHHHHHHHHHHHHhhhcCCce Q lcl|Aclame:pro 325 GILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK------ATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLI 398 (695) Q Consensus 325 v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~------~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t 398 (695) ++.+.+... ....+....+ +.+ +++.++. ++-+|-+.+.+.++....++...+.|...+++|-. T Consensus 260 ~l~~~g~~~---~~~~~~~~~~------~~~-~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~ 329 (451) T protein:vir:10 260 IYILENFGG---EDTSEFLKEL------KRY-KTIKTETDSEGDSGGLKTMQIEIPTEARKIILEILKKQIYESGQGLQQ 329 (451) T ss_pred eeeeecCCc---ccchhhHHHH------hhC-CeEEecCcCCccCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCcccc Confidence 776554221 1111221222 111 2333321 12344455677789999999999999999999963 Q ss_pred eeeccCcccccCcchHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHH Q lcl|Aclame:pro 399 KLLGITPTGLNASSEGEIRVWYDYV---RAYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRY 474 (695) Q Consensus 399 ~L~G~sp~Glnatge~D~~nyyd~i---~~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~ 474 (695) -. + ..| |+||. .++.-+..+ ...++..++..|++++.++..- .|.. ..++.+.|++...-++.|.+++.. T Consensus 330 ~~-~--~~g-n~Sg~-Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~-~~~~d~~~i~i~f~~~~p~n~~e~~~~~~ 403 (451) T protein:vir:10 330 DT-E--NFG-NASGV-ALKFFYRKLELKSGLLETEFRTSFDKLIKAILYF-LGVTDYKKIQQTYTRNMMSNDLEDADIAT 403 (451) T ss_pred cc-c--ccc-cccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCccceeEEecCCCCCCHHHHHHHHH Confidence 22 1 123 56776 454433333 2336667899999999888743 3433 457899999999989988877666 Q ss_pred HHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcc Q lcl|Aclame:pro 475 KQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGD 539 (695) Q Consensus 475 ~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (695) +.+ |.++.......+....+.. .....................+.... T Consensus 404 kl~---------g~iS~et~~~~~p~v~d~~--------~e~~~~~ee~~~~~~~~~~~~~~~~~ 451 (451) T protein:vir:10 404 KSV---------GIIPTKIILRHHPWVDDVE--------EAEKLYLEEKKIQASKVSDDYNNFTE 451 (451) T ss_pred HHh---------ccCchHHHHHhCCCCCCHH--------HHHHHHHHHHHHHHHHHHhhcCCCCC Confidence 543 4555555544432211110 00000000000000000000000000 No 135 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=98.53 E-value=3.4e-07 Score=56.05 Aligned_cols=332 Identities=13% Similarity=0.053 Sum_probs=146.9 Q ss_pred hhhcccccccccccccccchhhhh---hhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHH-HHh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRL---ARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVL-LAQ 121 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~-~~~ 121 (695) |++|-+...........+..+..+ ...|.. |-..|-...... .++...-.++ +||. ..+....||. ++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~v~~~~~~--~~~~~~~~~~-~~~~--pp~~~~~la~~~~~ 73 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTF--DDPTPVMNRAEI--LDYVECWSNG-EWFE--PPVSFAGLAKSFRA 73 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEc--CCceeecCcchh--hhhhhhhccC-ceec--CCCCHHHHHHHHhh Confidence 665433221110001011000000 000110 000000000000 1111111111 2222 1233344443 344 Q ss_pred ChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEE Q lcl|Aclame:pro 122 LPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAH 201 (695) Q Consensus 122 ~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~ 201 (695) ++....++-.-+.+.++ +++ .. .... +..|..++...-+||.++ T Consensus 74 ~~~h~~~l~~k~n~l~~-~~~--Pn-----------------~~~t----------------~~~f~~~~~d~ll~Gnay 117 (351) T protein:vir:78 74 STHHSSALFFKANVLAS-TFR--PH-----------------RWLS----------------RHAFERWALDFLTFGNGY 117 (351) T ss_pred hHhhhhhhhhhhhHHhh-ccc--CC-----------------CCCC----------------HHHHHHHHHHHHhcCCeE Confidence 55444444333322222 111 00 0000 111222332334689998 Q ss_pred EEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c--eEEchhhEEEec Q lcl|Aclame:pro 202 PYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHTIV 277 (695) Q Consensus 202 i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~--~~iH~SRli~~~ 277 (695) +++.-+.. |.+.+|.++.+..+.+.... | .+|++. + ..+-+..||++. T Consensus 118 ~~~~rn~~-----------------G~~~~L~pl~~~~v~~~~~~--~---------~~~~~~~~~~~~~~~~~eVihir 169 (351) T protein:vir:78 118 LERRRNMV-----------------GGTLRLEPALAKYVRRKADF--S---------GFVYVNGWQERHEFAPDSVFQLV 169 (351) T ss_pred EEEEECCC-----------------CCEEEEEEecCcceEEeeeC--C---------eEEEEecCCeEEEEccccEEEEc Confidence 87764322 34556777777666543211 1 123332 2 245677788876 Q ss_pred CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHh-ccce-eeechHHhhcchHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 278 SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQF-SVSG-ILMDLAQALMPGANVDLSMRAELINRYRDN 355 (695) Q Consensus 278 ~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~-~~~v-~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n 355 (695) +.. +.....|.|.+..+...+.--..+..-........ +... +++.. ..++.+..+.+.+.++.. ..-+| T Consensus 170 ~~~------~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl~~~~-~~ls~e~~~~lr~~~~~~-~G~~N 241 (351) T protein:vir:78 170 RPD------INQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTD-AAQKQDDVDNMRDALKNA-KGPGN 241 (351) T ss_pred CCC------CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC-CCCCHHHHHHHHHHHHHh-cCccc Confidence 532 12346899999988887765555544444433322 2222 33321 345666666777777653 34455 Q ss_pred ceeEEEEcC---CceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCccccc--CcchHHHHHHHHHHHHH Q lcl|Aclame:pro 356 RNILFLDKA---TEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSEGEIRVWYDYVRAY 426 (695) Q Consensus 356 ~~~~~ld~~---~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge~D~~nyyd~i~~~ 426 (695) .+.+++... ++.++....+.+. +-++.....++||++.+||-..+ |..+.+-. ++-|...+.|| T Consensus 242 ~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~ll-Gi~~~~t~~~sn~e~~~~~f~------ 314 (351) T protein:vir:78 242 FRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLL-GIVPSNSGGFGTPDTAARVFG------ 314 (351) T ss_pred ccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHh-cccCCCCCCcccHHHHHHHHH------ Confidence 554444211 2334444444433 34555666778999999998666 77543221 23343444444 Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHH Q lcl|Aclame:pro 427 QRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVA 470 (695) Q Consensus 427 Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~A 470 (695) ++.|.|.++++-++.- .+ +.+ .|+|++..-+...++| T Consensus 315 -~~~l~P~~~~iee~n~--~l---~~~-~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 315 -RNEIRPLQARFAELND--WL---GDE-VVRFDDYEIPPAPVAA 351 (351) T ss_pred -HHHHHHHHHHHHHHHh--hc---Ccc-ceecChhhhccccccC Confidence 3447777777654321 12 222 3677776655555554 No 136 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=98.53 E-value=1.5e-07 Score=58.00 Aligned_cols=418 Identities=12% Similarity=0.041 Sum_probs=168.8 Q ss_pred CCcccccccccccccccccchhhhhhhccCCCCchHHHHHHH----------------------hChhhhhHhhcchHHH Q lcl|Aclame:pro 79 NYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLA----------------------QLPEYRAMHEVLADEC 136 (695) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~----------------------~~~~~r~~v~~~a~d~ 136 (695) +.|+...-..-+ .... .....|..+..|+ .+...++|||+.++=+ T Consensus 1 ~~t~~d~i~~L~------------~~~~-~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l 67 (480) T protein:vir:78 1 MTTYHEHVERLQ------------GLLA-RDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRL 67 (480) T ss_pred CCCHHHHHHHHH------------HHHH-HHHHHHHHHHHHHhccccchhcccccchhhhhhhhhcchHHHHHHHHHhhh Confidence 111110000000 0000 0001111111121 2233455555555433 Q ss_pred hhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccc Q lcl|Aclame:pro 137 IRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTP 216 (695) Q Consensus 137 tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~P 216 (695) += .||.+ +.+.+..+.|...|++-++.....++.+.+-.||.|+.++.... .... T Consensus 68 ~~---------------~g~~~------~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~-~~~~--- 122 (480) T protein:vir:78 68 DI---------------EGFRI------SEDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPD-VESG--- 122 (480) T ss_pred cc---------------Cceec------CCCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCc-cccC--- Confidence 21 23322 22334556677788877888899999999999999988776321 0000 Q ss_pred cCCccccccCcceEEEEEecchhccccceeccccccc-----------ccCCceeEEE--cceEEchhhE----E--Eec Q lcl|Aclame:pro 217 LVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVAD-----------DFYKPSTWWM--IGTEVHATRL----H--TIV 277 (695) Q Consensus 217 l~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~-----------~yg~P~~y~i--~~~~iH~SRl----i--~~~ 277 (695) + ..|. ..|.+++|.++.|...+ .....+ +.+.+.++.+ .+..++..+. . ... T Consensus 123 ---d----~~~~-~~i~~~~p~~~~~i~D~-~~~~~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 193 (480) T protein:vir:78 123 ---D----PAGI-PLIRVESPLYMYAELDP-RNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVD 193 (480) T ss_pred ---C----CCCe-eEEEEEcccceEEEEcC-CCccceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCccccccc Confidence 0 0111 23555666655542111 001011 1111111111 0111110000 0 000 Q ss_pred CCcchh-------h---h-hcccCCCCchHHHH-HHHHHHHHHHHhHHHHHHHHHhccceeeechHH--hhcchHHHHHH Q lcl|Aclame:pro 278 SRPVGD-------M---L-KPTYSFAGISMTQL-AMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQ--ALMPGANVDLS 343 (695) Q Consensus 278 ~~~~p~-------~---~-~~~~~~~G~S~l~~-~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~--~l~~~~~~~l~ 343 (695) +.++|+ . - ......+|.|.++. +.+.+.+++++.......+..++...+.+.+.. ....+... T Consensus 194 ~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~--- 270 (480) T protein:vir:78 194 GDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGEN--- 270 (480) T ss_pred ccccccCCCCcceEEeecccccCCccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhCCCcccccccccc--- Confidence 011111 0 0 01123579998875 778888888888776665554443332221111 11111111 Q ss_pred HHHHHHHHhcCCceeEEEEcCCceeEEEec-ccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc-CcchHHHHHHHH Q lcl|Aclame:pro 344 MRAELINRYRDNRNILFLDKATEEFFQFNT-PLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGEIRVWYD 421 (695) Q Consensus 344 ~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~-~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln-atge~D~~nyyd 421 (695) ..+... +..++.+++++-+|-+++. ++.+..+.+.....++++.+++|...|=| + +-| +||+.=...+.. T Consensus 271 ---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~-~--~~n~~Sg~Al~~~~~~ 342 (480) T protein:vir:78 271 ---TTLDIY--YGRILTLASEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSS-S--SENPASAEAIIATDSR 342 (480) T ss_pred ---chhhhh--hhhhccCCCCCceEEecCccCHHHHHHHHHHHHHHHhcccCCCHHHhcc-c--cCchhHHHHHHHHHHH Confidence 111111 1122333333334444332 34456666777788899999999888844 3 233 567632222322 Q ss_pred --HHHHHHhhhhhHHHHHHHHHHHHHhcCCCCC---ceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhh Q lcl|Aclame:pro 422 --YVRAYQRNALQQLMNDVIVMIQLSLFGAVDP---SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAA 496 (695) Q Consensus 422 --~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~---d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~ 496 (695) .....++..+++.|.+++.+++.-..+..+. ++.+.|++....+..+.++...+..+.. .+.++...+.. T Consensus 343 l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g-----~~~~s~et~~~ 417 (480) T protein:vir:78 343 IVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANG-----QGPIPKEQARI 417 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhc-----ccCCCHHHHHh Confidence 2233456668899999998887655444432 5789999999999888766554433221 12344444333 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEE Q lcl|Aclame:pro 497 RLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMR 576 (695) Q Consensus 497 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (695) .+..... ...+.....................+.... ......... .......+........ T Consensus 418 ~lg~~~d------~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~---- 479 (480) T protein:vir:78 418 DLGYTAT------QREQMRDWDKQETEDMIDTLYSTTKAQADA----TPKPTVTET----KTETQTSPSGFNRTKT---- 479 (480) T ss_pred cCCCCHh------HHHHHHHHHHHHHHHHHHHhhccccCCCcc----ccCCCCCCC----CCccCCCcccCCCcCC---- Confidence 3322111 100000000000000000000000000000 000000000 0000000000000000 Q ss_pred EEEEEEEcCCe Q lcl|Aclame:pro 577 AAGAVYVVDGK 587 (695) Q Consensus 577 ~~~~i~~~~~~ 587 (695) | T Consensus 480 ----------~ 480 (480) T protein:vir:78 480 ----------R 480 (480) T ss_pred ----------C Confidence 0 No 137 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=98.53 E-value=1.6e-07 Score=57.91 Aligned_cols=380 Identities=10% Similarity=-0.022 Sum_probs=156.7 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +.....+.- ..+..... ........|.... +..-..+.+++.+..+|++++++.-.-=++.... T Consensus 1 Mg~~~~~~~---------~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~ 64 (395) T protein:vir:40 1 MGFKSWVSG---------FFNEEQRT---LNLTDTVWCSIPS----EKLKELSIKKWAIDSCANKIANTLSCAEVLTYEK 64 (395) T ss_pred CchHHHHHh---------hhcccccc---cccccchhhcccc----ccchhhhhhhHHHHHHHHHHHHHHhhCceeeccC Confidence 111100000 00000000 0000111121111 1111233467888999999999977654443211 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh-cCccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH-DQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~-~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) . ...+.+....|...=..+--...|.+++.+ --|+|-+++++. ++..-. |. T Consensus 65 ~----------------~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~--~~~~~~--~~-------- 116 (395) T protein:vir:40 65 G----------------EEVRKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQ--DEYIYV--AD-------- 116 (395) T ss_pred C----------------ccccchHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEe--cCceee--cC-------- Confidence 0 011111111122111112223445554443 345777776653 221100 00 Q ss_pred CcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHH Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYID 305 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~ 305 (695) ++ .+.. ..+.+..+. ...... |.+ .+.+.++.||||.....+ ....+.++.+.+.+.+. T Consensus 117 --~~---~~~~-~~~~~~~~~--~v~~~~------~~~-~~~~~~~evih~r~~~~~------~~~~~~~l~~~~~~~~~ 175 (395) T protein:vir:40 117 --SF---TKND-KSLYENTYT--EVTLKD------LTL-KKEFKESEVLHLTLNNES------IKSIIDGFYLLYGDLLT 175 (395) T ss_pred --Cc---cccc-cccccceee--eeeecC------cee-eeeeccccEEEeecCCCC------ccccchhHHHHHHHHHH Confidence 00 0000 000000000 000001 111 234677888888632210 01123333333332221 Q ss_pred HHHHHhHHHHHHHHHhcc-ceeeechHHhhcchHHHHHHHHHHH-HHHhcCCce-eEEEEcCCceeEEEecccCChHHHH Q lcl|Aclame:pro 306 NWLRTRQSVSDIVKQFSV-SGILMDLAQALMPGANVDLSMRAEL-INRYRDNRN-ILFLDKATEEFFQFNTPLSGLDALQ 382 (695) Q Consensus 306 ~~~~~~~~~~~l~~~~~~-~v~k~~~~~~l~~~~~~~l~~r~~~-~~~~~~n~~-~~~ld~~~e~~~~~~~~lsgl~~~~ 382 (695) .. .....+..+. .+++++....++.+..+.+.+.++. +....+|.+ .++++. +.+|+.++.+....+-+- T Consensus 176 ~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~-g~~~~~l~~~~~d~q~~e 248 (395) T protein:vir:40 176 AA------VNKYKKLNSRKIIVKLKAMFGQTPEAEEKLRLMLSERMKKFLAEGDSALPVED-GMEIDELAGDSKIAESRD 248 (395) T ss_pred HH------HHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHHHHhhccCCceeecCC-CceEEeccCChhhhhHHH Confidence 11 1112222222 2233332333444444555555543 233334444 566764 678999988766533222 Q ss_pred -----HHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCC--CCc-- Q lcl|Aclame:pro 383 -----AQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV--DPS-- 453 (695) Q Consensus 383 -----~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~--~~d-- 453 (695) +.+.++||.+-+||..+|-| -.++.|.-...||. ..|.|.+..+-+-+-+..+... ..+ T Consensus 249 ~~~~~~~~~~~Ia~~fgVPp~~l~~-----~~sn~e~~~~~f~~-------~~L~P~~~~ie~~l~~kLl~~~~~~~g~~ 316 (395) T protein:vir:40 249 IKKMIDDVFEMVANSFNIPLGLAKG-----DTVGLSEQVNSFLM-------FSINPIAEMFTDEGNRKFYGRDSVLERTY 316 (395) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhcC-----CCcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCChhhhcCCce Confidence 22346899999999998832 22333434455543 3477888777666665554422 223 Q ss_pred eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhh--hhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 454 IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGK--LDANDDPGVPADDDIDGVLTYV 531 (695) Q Consensus 454 ~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 531 (695) +.|.+.+|...+.++++ +...+++..|+++++|+|..+...+..+.... ................ T Consensus 317 i~fd~~~ll~~d~~~~~-------~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~~------ 383 (395) T protein:vir:40 317 MKLDTTRIKVQDIQEIA-------SSMDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTKNYAPLGENEEDL------ 383 (395) T ss_pred EEEechhhhccCHHHHH-------HHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCceeeecccccccccccccc------ Confidence 44555577777777664 45666778899999999988865544221100 0000000000000000 Q ss_pred hhhhhhcccccccccCCCccchhhhhh Q lcl|Aclame:pro 532 QRLAEGGDTGAPGGARAGATAPPTVAN 558 (695) Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (695) .-+. ........ T Consensus 384 -kgge--------------~~~~~~~~ 395 (395) T protein:vir:40 384 -KGGD--------------INENKGDS 395 (395) T ss_pred -CCCC--------------CCCCcCCC Confidence 0000 00000000 No 138 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=98.52 E-value=3e-07 Score=56.35 Aligned_cols=331 Identities=11% Similarity=0.040 Sum_probs=136.7 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) |||+|++.+..-+....++ .. +.++.+.+....-+|..|+..+++. T Consensus 1 m~~~~~~~~~~~~~~~~~~-~~---------------------------------~~~~~~~~~~~~~~~~~p~~v~~~~ 46 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQ-EG---------------------------------EFIPRQGGRAEAFTFGDPMPVLDGR 46 (350) T ss_pred CCccccCCCcCccccCCcc-hh---------------------------------hhccccccceEEEEeCCceeecCcc Confidence 8877544332222111110 00 0000000000000111111111100 Q ss_pred cccccccccccccccccchhhhhhhccCCCCchHHHHH-HHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCcccc Q lcl|Aclame:pro 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVL-LAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAG 159 (695) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~-~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~ 159 (695) .+ +++...-.++ +||.. . +....||. ++.++....++..-.....+ +++ .. T Consensus 47 --------~~-~~y~~~~~~~-~~~~p-p-~~~~~la~~~~~~~~h~~~l~~k~n~l~~-~~~--Pn------------- 98 (350) T protein:vir:11 47 --------GI-LDYLECWPNG-RWYEP-P-LSMEGLAKSVGSSVYLQSGLKFKRNMLAK-TFI--PH------------- 98 (350) T ss_pred --------hh-hHHHHHhhcC-ccccC-C-CCHHHHHHHHhhhhhhccchhhhhhhhhh-ccc--CC------------- Confidence 00 0000000000 22221 1 11112332 22233322222221111111 000 00 Q ss_pred ccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchh Q lcl|Aclame:pro 160 GNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYW 239 (695) Q Consensus 160 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~ 239 (695) .... +..|..++..--+||-+++++.-+. .|.+..|.++++.. T Consensus 99 ----~~~t----------------~~~f~~~v~d~ll~Gnay~~~~rn~-----------------~G~~~~L~~l~~~~ 141 (350) T protein:vir:11 99 ----RLLS----------------RATFEQFSLDWLTFGSAYLEQPRSR-----------------LGTRMPLQAPLAKY 141 (350) T ss_pred ----CCCC----------------HHHHHHHHHHHHhcCCeEEEEEEcC-----------------CCCEEEEEEeCCce Confidence 0001 1112222222236898888776432 23456677777776 Q ss_pred ccccceecccccccccCCceeEEEcc----eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH Q lcl|Aclame:pro 240 VTPNNYNSINPVADDFYKPSTWWMIG----TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 315 (695) Q Consensus 240 i~p~~~~~~dp~s~~yg~P~~y~i~~----~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~ 315 (695) +.... |. + .+|++.+ ..+.++.||+|.+... .....|.|.++.....+.--..+..-.. T Consensus 142 vr~~~----~~---~----~~~~~~~~~~~~~~~~~eVihir~~~~------~~~~yGls~~~~a~~si~l~~~a~~~~~ 204 (350) T protein:vir:11 142 MRRGT----DL---E----TFYQVRSWKDEHEFEKGSVIQLREADI------NQEIYGVPEWFCALQSALLNESATLFRR 204 (350) T ss_pred eEeee----cC---C----eEEEEeeCCeEEEECcccEEEeCCCCC------CCCcccccHHHHHHHHHHHHHHHHHHHH Confidence 65431 11 1 1344432 3567788888875321 2345799999988888765555444444 Q ss_pred HHHHHhc-c-ceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEE-cC--Cc--eeEEEecccC--ChHHHHHHHH Q lcl|Aclame:pro 316 DIVKQFS-V-SGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLD-KA--TE--EFFQFNTPLS--GLDALQAQAQ 386 (695) Q Consensus 316 ~l~~~~~-~-~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld-~~--~e--~~~~~~~~ls--gl~~~~~~~~ 386 (695) ....... . .++++.. ..++.+..+.+.+.++.. ..-+|.+.+++. .+ ++ ++..++.+.. .+-++-.... T Consensus 205 ~~f~NGa~~~gil~~~~-~~ls~e~~~~l~~~~~~~-~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~ 282 (350) T protein:vir:11 205 KYYNNGSHAGFILYMTD-AAQNEEDIDALRTALKTA-KGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISR 282 (350) T ss_pred HHHhccCCCceEEEecC-CCCCHHHHHHHHHHHHHh-cCccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhH Confidence 4333222 2 2233322 345656666676666553 334555554443 21 23 3444433322 2445556777 Q ss_pred HHHHhhhcCCceeeeccCc---ccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccc-- Q lcl|Aclame:pro 387 EQMSAVSHIPLIKLLGITP---TGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNAL-- 461 (695) Q Consensus 387 ~~iaaas~iP~t~L~G~sp---~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL-- 461 (695) ++||++.+||-..| |..+ +|++ +-|.-.+.||. +.|.|.++++-++.- .+|. +- +.|++. T Consensus 283 ~eIa~a~~VPp~ll-Gi~~~~t~~~s-n~e~~~~~f~~-------~~L~P~~~~ie~ln~--~l~~--~~--~~F~~~~~ 347 (350) T protein:vir:11 283 DDQLAGLRVYPQLM-GVVPQNAGGFG-SISDAAAVWAS-------LELAPMQTRLQQVNE--MIGE--EV--VRFAQFDA 347 (350) T ss_pred HHHHHHhCCCHHHh-cccCCCCCCcC-CHHHHHHHHHH-------HHHHHHHHHHHHHHh--hcCc--cc--cccCcccc Confidence 88999999998755 7543 3443 33434455543 336776666654221 1221 11 223321 Q ss_pred ccc Q lcl|Aclame:pro 462 REL 464 (695) Q Consensus 462 ~~~ 464 (695) ..+ T Consensus 348 ~~l 350 (350) T protein:vir:11 348 PGL 350 (350) T ss_pred cCC Confidence 122 No 139 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=98.51 E-value=1.3e-07 Score=58.32 Aligned_cols=354 Identities=14% Similarity=0.064 Sum_probs=153.5 Q ss_pred ccccccchh-------------hhhhhccCC---CCchH---HH-HHH--HhChhhhhHhhcchHHHhhCCceeeccchh Q lcl|Aclame:pro 92 LDFNGTSMD-------------ALSFVTSSG---FPGFP---TL-VLL--AQLPEYRAMHEVLADECIRTWGEAIGGTKE 149 (695) Q Consensus 92 ~~~~~~~~~-------------~~~~~~~~~---f~gy~---~~-a~~--~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~ 149 (695) |+....++- ...+|.+.. +.|.. .+ .++ ..||. +++||+.++=+.= T Consensus 1 m~~~~i~~L~~~~~~~~~r~~~~~~yy~g~~~~~~~~~~~p~~~~~~~~~v~nw~-~~~Vd~~a~rl~~----------- 68 (422) T protein:vir:97 1 MNYMGMGYLRRKLALFKTGVDKRYRYYAMDDRDDTRSIVMPNNVREMYRSVLEWT-AKGVDSLADRIIF----------- 68 (422) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhcCccccHHHHHHHHhhcchh-HHHHHHHHhcccc----------- Confidence 222221111 111222111 11211 11 111 11332 5555554432111 Q ss_pred hhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcce Q lcl|Aclame:pro 150 KADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSF 229 (695) Q Consensus 150 d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l 229 (695) .||+.. +. .+.+.|.+-++.....++.+-+-.||.|++++..+.++ ..|+ T Consensus 69 ----~Gf~~~-------d~----~l~~~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~---~~p~------------ 118 (422) T protein:vir:97 69 ----REFTND-------DF----NAWEIFKANNPDIFFDTAIQSALIASCCFVYIMPGAED---GLPK------------ 118 (422) T ss_pred ----ceeeCC-------ch----hHHHHHHhcChHHHHHHHHHHHHHhcceeEEEeeCCCC---CeeE------------ Confidence 233221 11 24556666677777777888777899999988654222 1221 Q ss_pred EEEEEecchhccccceeccccccc------------ccCCce---------eEEEc--ce---EEchhh---EEEecCCc Q lcl|Aclame:pro 230 QGLRVVEPYWVTPNNYNSINPVAD------------DFYKPS---------TWWMI--GT---EVHATR---LHTIVSRP 280 (695) Q Consensus 230 ~~l~v~d~~~i~p~~~~~~dp~s~------------~yg~P~---------~y~i~--~~---~iH~SR---li~~~~~~ 280 (695) |++++|.+++.. | ||... ..|++. .|.+. +. .-|+-- ++.|..++ T Consensus 119 --i~~~sp~~~~~i-~---D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 192 (422) T protein:vir:97 119 --MQVIEASKATGI-L---DPTTFLLTEGYAILESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRP 192 (422) T ss_pred --EEEechhhEEEE-E---eCCCCcceeeEEEEEecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccC Confidence 233333333221 0 11110 111221 11111 00 011111 12222211 Q ss_pred chhhhhcccCCCCchHH-HHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeE Q lcl|Aclame:pro 281 VGDMLKPTYSFAGISMT-QLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNIL 359 (695) Q Consensus 281 ~p~~~~~~~~~~G~S~l-~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~ 359 (695) .....+|.|.+ +.++..+.++.++..-...-..-++.....+-+... .+.....+..++. .++ T Consensus 193 ------~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~-d~~~~~~~~~~~~---------~i~ 256 (422) T protein:vir:97 193 ------DAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSFPQKYVLGMDP-DAKPMEKWRATVS---------TLL 256 (422) T ss_pred ------CCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccCc-ccccCchhhhhhh---------hhh Confidence 12235799976 778888888888776544433333332222222211 0111111111111 233 Q ss_pred EEEcCCc----eeEEEe-cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc-CcchH---HHHHHHHHHHHHHhhh Q lcl|Aclame:pro 360 FLDKATE----EFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEG---EIRVWYDYVRAYQRNA 430 (695) Q Consensus 360 ~ld~~~e----~~~~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln-atge~---D~~nyyd~i~~~Qe~~ 430 (695) .++++++ ++.+++ +++.++-+.+.....++|+.+++|..-|-|.+ -| +|++. ........++.+| .. T Consensus 257 ~~~~de~~~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~---~NpsSa~Ai~a~~~~L~~ka~~k~-~~ 332 (422) T protein:vir:97 257 EISKDEDGDKPTVGQFTTASMAPFMEHLKMYASLFAGGSGLTLDDLGFPS---DNPSSVESIKAAHENLRAAGRKAQ-RS 332 (422) T ss_pred ccCCCCCCCcceeeecCCCChhHHHHHHHHHHHHHhcccCCCHHHhcccc---CchhHHHHHHHHHHHHHHHHHHHH-HH Confidence 4433221 354443 56677888888899999999999987775543 24 56663 2334444455554 44 Q ss_pred hhHHHHHHHHHHHHHhcC--CCCC---ceeEEeccccccchhHHHHHHHHHHHhhhhhhhh--hcchhhhhhhhhhhhhh Q lcl|Aclame:pro 431 LQQLMNDVIVMIQLSLFG--AVDP---SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQE--QVIRPDQVAARLNTEPD 503 (695) Q Consensus 431 l~p~l~~l~~~l~~s~~g--~~~~---d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~--g~i~~~e~r~~L~~~~~ 503 (695) +...++++..+++.-..+ ..++ ++.+.|.|....+..+.|.. +++..+++.+ +..+...+.+.+.... T Consensus 333 fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~s~a~~----aDa~~Kl~~a~~~~~~~~~~~~~lg~~~- 407 (422) T protein:vir:97 333 FSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKWEPLFEADANMLTLV----GDGAIKLNQAIPGFMDADVIRDLTGVKG- 407 (422) T ss_pred HHHHHHHHHHHHHHHhcCCcccchhhccceEEEccCCCCChHHHHHH----HHHHHHHHhhccccccHHHHHHHcCCCc- Confidence 789999988876543322 1222 36799997665553333222 2334444443 3333344433332210 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 504 GPYAGKLDANDDPGVPADDDIDG 526 (695) Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~ 526 (695) ..... .......... T Consensus 408 -----~~~~~---~~~~~~~~d~ 422 (422) T protein:vir:97 408 -----ADKPI---PAITEVTTDG 422 (422) T ss_pred -----hhHHH---HHHHhhhccC Confidence 00000 0000000000 No 140 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=98.50 E-value=4.3e-07 Score=55.50 Aligned_cols=379 Identities=10% Similarity=0.020 Sum_probs=173.6 Q ss_pred ccccccchhhhhhhcc--CCCCchHHHHHHH--hC----------------------------------hhhhhHhhcch Q lcl|Aclame:pro 92 LDFNGTSMDALSFVTS--SGFPGFPTLVLLA--QL----------------------------------PEYRAMHEVLA 133 (695) Q Consensus 92 ~~~~~~~~~~~~~~~~--~~f~gy~~~a~~~--~~----------------------------------~~~r~~v~~~a 133 (695) |+.......-..+... ..-.-|..+..|. .| .+++.||+..+ T Consensus 1 ~~~e~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~ 80 (471) T protein:vir:10 1 MEIEVIKKIISSQMVKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQKK 80 (471) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhhh Confidence 2211111110111100 0001122222222 12 22333333222 Q ss_pred HHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchh Q lcl|Aclame:pro 134 DECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIM 213 (695) Q Consensus 134 ~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~ 213 (695) .=++ .++.++. ..+.+..+.+...++ -++...+.++.+.+..||.++.++.++..+. T Consensus 81 ~yl~---------------G~p~~~~-----~~~~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g-- 137 (471) T protein:vir:10 81 AYAL---------------TYPPTFD-----VDDKKVNDMIVDVLG-DDYERISKQLCVNAGNAGIAWLHVWKDASDN-- 137 (471) T ss_pred hhhc---------------ccCceec-----cCChHHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEEeeCCCC-- Confidence 1111 1111111 223344455555444 4778889999999999999999988753221 Q ss_pred ccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc----ceE-----E-chhhEEEec------ Q lcl|Aclame:pro 214 DTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI----GTE-----V-HATRLHTIV------ 277 (695) Q Consensus 214 ~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~----~~~-----i-H~SRli~~~------ 277 (695) .+ .+.+++|.++.|...+..+ ..+.++ -.+|... +.. | -...+.+|. T Consensus 138 --------------~~-~~~~~~p~~~~~i~d~~~~-~~~~~~-ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~ 200 (471) T protein:vir:10 138 --------------SF-RYACVDSKEVIPIYSKSLD-KKSIGV-LRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKP 200 (471) T ss_pred --------------ee-EEEEEcccceEEEEcCCCC-CceEEE-EEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcc Confidence 11 1333444444332110000 000000 0011100 000 0 000011110 Q ss_pred -----------------C-----Ccchhh------hhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeec Q lcl|Aclame:pro 278 -----------------S-----RPVGDM------LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMD 329 (695) Q Consensus 278 -----------------~-----~~~p~~------~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~ 329 (695) | ...|+. ..-.++..|.|.++.+.+-+.+++.+....+..+..++...+.+. T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~ 280 (471) T protein:vir:10 201 LEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPFKNNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLT 280 (471) T ss_pred cccccccccccccccccccccccccccCCCCceeEEEeccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeee Confidence 0 000100 011234569999999999999999998888888887777666655 Q ss_pred hHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC------CceeEEEecccCChHHHHHHHHHHHHhhhcCCceeeecc Q lcl|Aclame:pro 330 LAQALMPGANVDLSMRAELINRYRDNRNILFLDKA------TEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGI 403 (695) Q Consensus 330 ~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~------~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~ 403 (695) +..... ..+.... .+. .+++.++.. +-+|-+.+.+.+++...++...+.|...+++|-.-..+ T Consensus 281 g~~~~~---~~~~~~~------~~~-~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~~~~~- 349 (471) T protein:vir:10 281 NYGGQD---KQEFLED------LKR-YKMIKMDNDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNPETDK- 349 (471) T ss_pred cCCccc---cchhHHH------hhc-CCeEEecCCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCCCccc- Confidence 432111 1111111 111 123333211 23455556777899999999999999999999653332 Q ss_pred CcccccCcchHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHHHh Q lcl|Aclame:pro 404 TPTGLNASSEGEIRVWYDYV---RAYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQS 479 (695) Q Consensus 404 sp~Glnatge~D~~nyyd~i---~~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~ 479 (695) .| |+||. .++.-|..+ .+..+..++..|++++.++..- +|.. ..++.+.|++....++++.+++..+. T Consensus 350 --~g-n~Sg~-Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~-~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--- 421 (471) T protein:vir:10 350 --LG-NSSGV-ALKFLYSLLELKAGNMETQFRSGYATLVKMILKH-LGLSDKLKIKQTWTRNSINNDTEMAQVVSTL--- 421 (471) T ss_pred --cc-CccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCceeEEEeCCCCCCCHHHHHHHHHHH--- Confidence 13 56776 454444333 3446677899999998887643 3333 35789999999999999888765543 Q ss_pred hhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhh Q lcl|Aclame:pro 480 DVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVA 557 (695) Q Consensus 480 ~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (695) .|.++...+...+....+. ..+ ........... ......... ......+. T Consensus 422 ------~g~iS~et~~~~~p~v~D~------~~E-~eri~~E~~~~--~~~~~~~~~-------------~~~~~e~~ 471 (471) T protein:vir:10 422 ------ATITSRENVAKSNPIVEDW------QDE-LRLQKAEQEGR--SEKLYDMEE-------------VEHESEVE 471 (471) T ss_pred ------hccCchHHHHHhCCCCCCH------HHH-HHHHHHHHHHH--HhcccccCC-------------CCCccccC Confidence 3556666654443321110 000 00000000000 000000000 00000000 No 141 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=98.49 E-value=4.5e-07 Score=55.39 Aligned_cols=375 Identities=11% Similarity=0.001 Sum_probs=176.4 Q ss_pred ccccccchhhhhhhccCCCCchHHHHHHH---------------------hChhhhhHhhcchHHHhhCCceeeccchhh Q lcl|Aclame:pro 92 LDFNGTSMDALSFVTSSGFPGFPTLVLLA---------------------QLPEYRAMHEVLADECIRTWGEAIGGTKEK 150 (695) Q Consensus 92 ~~~~~~~~~~~~~~~~~~f~gy~~~a~~~---------------------~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d 150 (695) |+..-... .++-+ .....-|..+..|+ .+.+.+.||+..+.=++-+...+ T Consensus 1 l~~~~l~~-~i~~~-~~~~~r~~~l~~yy~g~~~il~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~------- 71 (429) T protein:vir:98 1 MTKDLLSE-LIQKH-RSFNLSYSAYKQLYEGDHAILQQKQKEQYKPDNRLVVNFAKYIVDTFNGYFIGVPVQT------- 71 (429) T ss_pred CCHHHHHH-HHHHH-HHHHHHHHHHHHHhccccccccccccccCCCcceeecchHHHHHHHHhhhhcccCcee------- Confidence 11000000 00000 00011122222222 12333444444433333322222 Q ss_pred hhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceE Q lcl|Aclame:pro 151 ADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQ 230 (695) Q Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~ 230 (695) . ..+++..+.+...+++-++...+.++.+..-.||.+++++..+.++.. T Consensus 72 --------~-----~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~------------------ 120 (429) T protein:vir:98 72 --------S-----HENKQVSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEA------------------ 120 (429) T ss_pred --------e-----cCChHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcE------------------ Confidence 1 123445566778888888999999999999999999998887544321 Q ss_pred EEEEecchhccccceecccccccccCCceeEEEcce-----EEchhhEEEec--------CC-------cchhhhhcccC Q lcl|Aclame:pro 231 GLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGT-----EVHATRLHTIV--------SR-------PVGDMLKPTYS 290 (695) Q Consensus 231 ~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~-----~iH~SRli~~~--------~~-------~~p~~~~~~~~ 290 (695) .+.+++|.++.|...+..+ ..+.++- .+|...+. ..-..++..|. .. .+|-. .-.++ T Consensus 121 ~~~~~~p~~~~~v~dd~~~-~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~ 197 (429) T protein:vir:98 121 GITYLTPLEAFIVYDDSIR-QKPLFAV-RYFYNKGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMI-EYVEN 197 (429) T ss_pred EEEEEcccceEEEEeCCCC-CceEEEE-EEEEecCceEEEEEEeCceEEEEEecCCceEecccccccCCccceE-EecCC Confidence 2344555555443211100 0011110 11111110 00011111110 00 01111 11345 Q ss_pred CCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCC---c- Q lcl|Aclame:pro 291 FAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKAT---E- 366 (695) Q Consensus 291 ~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~---e- 366 (695) .+|.|.++.+.+.+.+++.+....+..+..++...+.+.+... . ++.+ +. ++.+ +++.++.++ . T Consensus 198 ~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p~~~i~g~~~-~---~~~~-~~------~~~~-~~~~~~~~~~~~~~ 265 (429) T protein:vir:98 198 EERQSLLASVVTLINAFNKAISEKANDVEYFADAYLKILGAEL-D---DETL-KS------LRDT-RIINLKDTDAQQLT 265 (429) T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCC-C---cchh-hh------HhhC-ceeeccCCCCCCcc Confidence 6899999999999999999998888877777766655443211 1 1111 11 1112 233333211 2 Q ss_pred -eeEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHH-HHH---HHHHHHhhhhhHHHHHHHHH Q lcl|Aclame:pro 367 -EFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRV-WYD---YVRAYQRNALQQLMNDVIVM 441 (695) Q Consensus 367 -~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~n-yyd---~i~~~Qe~~l~p~l~~l~~~ 441 (695) +|-+.+.+.++....++...+.|...+++|-.-. +. .| |+||+ .++. |.. .++. ++..++..|++++.+ T Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~-~~--~g-n~Sg~-Al~~~~~~l~~k~~~-~~~~~~~~l~~~~~l 339 (429) T protein:vir:98 266 VEFLQKPDADATQEHLLDRLENLIFRTAMVANISD-ES--FG-TASGI-ALRYRLQAMDNLAKT-KERKFMSGMNRRYKL 339 (429) T ss_pred eeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCc-cc--cc-cchHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH Confidence 3444566777899999999999999999996422 21 12 45666 4432 332 2333 456688889988887 Q ss_pred HHHHh--cC-CC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 442 IQLSL--FG-AV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPG 517 (695) Q Consensus 442 l~~s~--~g-~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~ 517 (695) ++.-. .+ .. ..++++.|++....+..+.++...+.+ |.++...+...+....+. . ..... T Consensus 340 i~~~~~~~~~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl~---------g~is~et~~~~l~~v~d~------~-~E~~r 403 (429) T protein:vir:98 340 IASYPTSKIGPKDWIGIKYKFTRNLPANLLEESQIAGNLA---------GIVSEETQVGVLSIVENP------Q-KEIER 403 (429) T ss_pred HHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHHh---------ccCchHHHHHhCCCCCCH------H-HHHHH Confidence 76532 11 11 135889999999999988887665542 556655554444321110 0 00000 Q ss_pred hhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhh Q lcl|Aclame:pro 518 VPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVA 557 (695) Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (695) ...................... ... . T Consensus 404 i~~E~~~~~~~~~~~~~~~~~~------~~~--------~ 429 (429) T protein:vir:98 404 KNSDKSTLISRQAGGLNGQNTT------TIL--------E 429 (429) T ss_pred HHHHHHHHHHHHHhhhcCCCCC------CCC--------C Confidence 0000000000000000000000 000 0 No 142 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=98.48 E-value=4.9e-07 Score=55.16 Aligned_cols=467 Identities=10% Similarity=0.057 Sum_probs=201.5 Q ss_pred cChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchh Q lcl|Aclame:pro 21 VAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMD 100 (695) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (695) |-++...+ ....++.............+. +....+ .....+.....+.+.. T Consensus 1 m~~~~~r~-------------------------~~~~a~~~~~~~~~~~~~~y~---gA~~~~-r~~~~w~~~~~s~~~~ 51 (553) T protein:vir:63 1 MTKVTVRK-------------------------LSEVTSGRPEQSASLGGGGLE---GASRLS-RETVSWNPSLRSPDAL 51 (553) T ss_pred Ccchhhhh-------------------------hcccccccchhhhhhhccccc---ccccCC-CcccccccCCCChHHH Confidence 11111111 000011110000000000000 000000 0000111111111111 Q ss_pred hhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 101 ALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER 180 (695) Q Consensus 101 ~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 180 (695) +... . .-+-=....+++.|+.++.+|+......+=.|++....+....+. | ...+.+.+..+.|+++|++ T Consensus 52 -~~~~-~-~~lr~RaRdL~rNn~~a~~av~~~~~nvVG~Gi~~~~~~~~~~l~-g------~~~~~~~~~~~~ie~~w~~ 121 (553) T protein:vir:63 52 -INPL-K-RIADARGRDMADNDGFTNGAVGYQRDSIVGAQYRLNSMPDINVIP-G------ATEEWAEEYQTIVEAKFEL 121 (553) T ss_pred -HHHH-H-HHHHHHHHHHHhcChHHHHHHHHHHHhhccCCceeeeccchhhhc-C------CCHHHHHHHHHHHHHHHHH Confidence 0000 0 000011234566789999999888877776677665443322211 0 0112233444556655554 Q ss_pred h--------------chHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee Q lcl|Aclame:pro 181 L--------------RIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN 246 (695) Q Consensus 181 l--------------~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~ 246 (695) . .+-+....+++..-.-|-+++.+....+. .-|+ .+ .|.++++..|... ++ T Consensus 122 wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~---~~~~----------~~-~lq~ie~drl~~~-~~ 186 (553) T protein:vir:63 122 YAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAEWDRAA---NRPY----------AT-CFQMVSTDRLSNP-YQ 186 (553) T ss_pred hcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEeeeccCC---CCcc----------cc-eEEEechhhcCCC-CC Confidence 2 12223344444333356665554442211 1111 11 2567777776432 11 Q ss_pred cccccc---------cccCCceeEEEcc----------------------eEEchhhEEEecCCcchhhhhcccCCCCch Q lcl|Aclame:pro 247 SINPVA---------DDFYKPSTWWMIG----------------------TEVHATRLHTIVSRPVGDMLKPTYSFAGIS 295 (695) Q Consensus 247 ~~dp~s---------~~yg~P~~y~i~~----------------------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S 295 (695) .|.+ -.+|+|..|+|.. ..|+.++|||+-...-|. +--|+| T Consensus 187 --~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~~v~a~~vlH~f~~~r~g------Q~RGis 258 (553) T protein:vir:63 187 --QLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSKPWGRRQVIHILEPREPD------QSRGIA 258 (553) T ss_pred --CCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccccccChhHheecccccCCC------cccCCc Confidence 1211 2579999998831 247778877655443333 346999 Q ss_pred HHHHHHHHHHHHHHHhHHH--HHHHHHhccceeeechHH-----hhcchHH-HH----HHHHHHHH-------HHhcCCc Q lcl|Aclame:pro 296 MTQLAMPYIDNWLRTRQSV--SDIVKQFSVSGILMDLAQ-----ALMPGAN-VD----LSMRAELI-------NRYRDNR 356 (695) Q Consensus 296 ~l~~~~~~l~~~~~~~~~~--~~l~~~~~~~v~k~~~~~-----~l~~~~~-~~----l~~r~~~~-------~~~~~n~ 356 (695) .|-.++..|.+++.-..+- +..+...-..++|.+.-. .+.+... .. ...-.+.. ....-.- T Consensus 259 ~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 338 (553) T protein:vir:63 259 DIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELPPEFIHSQMSGGSPNADMVGIFGKYMDALKAYVGGANNIQIDG 338 (553) T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCChhhhhhhcccccccccccccccccccccccccccccceeecC Confidence 9999999999887766532 223444444556654311 1110000 00 00000000 0001123 Q ss_pred eeEEEEcCCceeEEEecc--cCChHHHHHHHHHHHHhhhcCCceeeeccCccccc-CcchHHHHHHHHHHHHHHhhhhh- Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTP--LSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN-ASSEGEIRVWYDYVRAYQRNALQ- 432 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~--lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln-atge~D~~nyyd~i~~~Qe~~l~- 432 (695) |++..-..+|+++..+.+ -++..+....+...||+..|||.-.|.|. .++-| ||.-..+..+...++.+|...+. T Consensus 339 G~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D-~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~ 417 (553) T protein:vir:63 339 AKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRD-FSKANYSSIQAGIAMTRRFLEGRKKMCADR 417 (553) T ss_pred ceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhh-cccccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 444433457889988866 46899999999999999999999999995 34444 44555677788889999986544 Q ss_pred ---HHHHHHHHHHHHHhcCCCCCce---------------eEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhh Q lcl|Aclame:pro 433 ---QLMNDVIVMIQLSLFGAVDPSI---------------KWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQV 494 (695) Q Consensus 433 ---p~l~~l~~~l~~s~~g~~~~d~---------------~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~ 494 (695) |+.+.+++..+++.--.+|..+ ...|.+.--..-. -.|.+++....+.+|..+..++ T Consensus 418 ~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iD-----P~Ke~~A~~~~i~~G~~t~~~~ 492 (553) T protein:vir:63 418 LATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQID-----QLKETQAAVMRIDAGLSTYERE 492 (553) T ss_pred HHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccC-----hHHHHHHHHHHHHcCCCCHHHH Confidence 4444444444433222233321 1233332222111 1244677778888888888877 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCce Q lcl|Aclame:pro 495 AARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAA 574 (695) Q Consensus 495 r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (695) ......+.............. ... .................. ............... T Consensus 493 ~a~~G~D~~~v~~q~a~e~~~--~~~-~Gl~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~----------- 549 (553) T protein:vir:63 493 IARLGGDFRKSFAQRAREDAL--LKK-YGLTFNLSAKRSLGDGRD---------AATGIAEDPAAAQTS----------- 549 (553) T ss_pred HHHhCCCHHHHHHHHHHHHHH--HHH-cCCCCCCCCccccCCCcc---------cCCCCCCCCCCCCcc----------- Confidence 665544433222211110000 000 000000000000000000 000000000000000 Q ss_pred EEEEEEEEEcCCe Q lcl|Aclame:pro 575 MRAAGAVYVVDGK 587 (695) Q Consensus 575 ~~~~~~i~~~~~~ 587 (695) ++++ T Consensus 550 ---------~~~e 553 (553) T protein:vir:63 550 ---------QQGE 553 (553) T ss_pred ---------cccC Confidence 0000 No 143 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=98.48 E-value=5e-07 Score=55.11 Aligned_cols=415 Identities=9% Similarity=0.005 Sum_probs=177.2 Q ss_pred cccC--CCCcccccccccccc--cccccchhhh-hhhc--cCCCCchHHHHHHHh--ChhhhhHh---hcchHHHhhCCc Q lcl|Aclame:pro 74 EVDV--SNYTPRERRAASYAL--DFNGTSMDAL-SFVT--SSGFPGFPTLVLLAQ--LPEYRAMH---EVLADECIRTWG 141 (695) Q Consensus 74 ~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~--~~~f~gy~~~a~~~~--~~~~r~~v---~~~a~d~tR~~~ 141 (695) .+.. +...+.. .-.+.. .-.......+ .+.. .....-|..+..|+. |.+..+.. .....+-++... T Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ 78 (478) T protein:vir:10 1 MISINWPWDKPYH--EQVVEQIKPKYETQEEMILRLVREHKENIDNITMGERYYNHHPDILDAPFKRDVNGDYDETKPDW 78 (478) T ss_pred CccccccCCchhh--hHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcccccccccccc Confidence 1100 0000000 000000 0000000000 0000 000111222233321 21111110 011111122111 Q ss_pred eeecc--------chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchh Q lcl|Aclame:pro 142 EAIGG--------TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIM 213 (695) Q Consensus 142 ~i~~~--------~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~ 213 (695) +|+.+ ...=.+.++.++. ..+.+..+.|...++. ++...+.++.+.+-.||.+++++.++.++. T Consensus 79 ki~~n~~k~ivd~~~~yl~g~p~~~~-----~~~~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~-- 150 (478) T protein:vir:10 79 RMYTNYHQNLVDQKVAYAVANPVTFG-----VDNDKALKQIQHTLNH-KWDDKLVDILTAASNKGIEWVQPYVDEEGE-- 150 (478) T ss_pred eeccchHHHHHHHHhhhhcccCceee-----cCChHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCeEEEEEEecCCCc-- Confidence 22111 1111222222221 2344556666666653 678888999999999999999988754432 Q ss_pred ccccCCccccccCcceEEEEEecchhccccceecccccccccCCce----eEEEcce---EEc-hhhEEEecCC------ Q lcl|Aclame:pro 214 DTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPS----TWWMIGT---EVH-ATRLHTIVSR------ 279 (695) Q Consensus 214 ~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~----~y~i~~~---~iH-~SRli~~~~~------ 279 (695) + .+.+++|.++.|..- |+ .+++|. +|.+.+. .+| +.++..+... T Consensus 151 ---------------~-~~~~~~p~~~~~v~d---~~---~~~~~~~~ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~ 208 (478) T protein:vir:10 151 ---------------F-KTFRVPAEQAVPIWT---NK---ERDELQAFIRVYELDGAERVEYWTKDDVTFYELKEGQLIP 208 (478) T ss_pred ---------------e-EEEEEcccceEEEEc---CC---CCCceEEEEEEEeeeCceEEEEEeCCcEEEEEecCCeeec Confidence 1 134455555444211 11 122222 1222211 111 2222211110 Q ss_pred -----------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcc Q lcl|Aclame:pro 280 -----------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMP 336 (695) Q Consensus 280 -----------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~ 336 (695) .+|-. .-.++..|.|.++.+.+.+.+++.+....+.-+..++...+.+.+...- T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~~~-- 285 (478) T protein:vir:10 209 DFYRSEDHIQPHYYQGNKLMSWGRVPFI-PFKNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGE-- 285 (478) T ss_pred cccccccccccceecccccccCCcceEE-EeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCCcc-- Confidence 01111 1123557999999999999999999998888887777666655433211 Q ss_pred hHHHHHHHHHHHHHHhcCCceeEEEEc-CCce--eEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcch Q lcl|Aclame:pro 337 GANVDLSMRAELINRYRDNRNILFLDK-ATEE--FFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSE 413 (695) Q Consensus 337 ~~~~~l~~r~~~~~~~~~n~~~~~ld~-~~e~--~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge 413 (695) ...+.... ++. .+++.++. ++.+ +-+.+.+.+++...++...+.|...+++|-.-. + +-+| |.||+ T Consensus 286 -~~~~~~~~------~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~-~~~~-n~Sg~ 354 (478) T protein:vir:10 286 -DMKDFMHN------LKY-YKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQ-D-KFGN-SPSGI 354 (478) T ss_pred -cccchhhh------hhh-CceeEecCCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcCc-c-cccc-chHHH Confidence 00111111 111 23344432 2233 444556777899999999999999999996433 2 1122 55666 Q ss_pred HHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCCC-CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcch Q lcl|Aclame:pro 414 GEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAVD-PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIR 490 (695) Q Consensus 414 ~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~~-~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~ 490 (695) .=..-|..... ...+..+...|++++.+++.-..+..+ .++.+.|++...-++++.+++..+. .|.++ T Consensus 355 Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~d~~~i~i~f~~~~p~~~~e~~~~~~~~---------~g~iS 425 (478) T protein:vir:10 355 ALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVRVQDIEITFNFNVMVNELENSQIAMNS---------TGLLS 425 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeCCCCCCCHHHHHHHHHHH---------hCCCC Confidence 32222333322 334566889999999887654433333 3789999998887888876654432 35566 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhh Q lcl|Aclame:pro 491 PDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 491 ~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (695) ...+...+....+. ..+.. ..... ...... ............. .......... T Consensus 426 ~et~i~~~~~v~d~------~~E~~-ri~~E-~~~~~~-~~~~~~~~~~d~~--------~~~~~d~~~e 478 (478) T protein:vir:10 426 KETILGNHSWVQDP------VAEME-RIEQE-NIELNQ-QLPDIEEGLNDEQ--------QRQSEDNQSE 478 (478) T ss_pred hHHHHHhCCCCCCH------HHHHH-HHHHH-HHHHHH-hccccCCCCcccc--------cccCcCCCCC Confidence 55554443221110 00000 00000 000000 0000000000000 0000000000 No 144 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=98.45 E-value=5.9e-07 Score=54.73 Aligned_cols=438 Identities=13% Similarity=0.075 Sum_probs=173.4 Q ss_pred hhhcccccccccccccccchhh-hhhhcccccCCCCcccccccccccccccccchhhhhhhccCC---CCch---HHHHH Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSL-RLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSG---FPGF---PTLVL 118 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---f~gy---~~~a~ 118 (695) |.--.... +...+ .....+... .++......+|.+.. +.|. +.... T Consensus 1 ~~~~~~~d---------~~~~i~~L~~~~~~~------------------~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~ 53 (488) T protein:vir:23 1 MAETESID---------PEKLRDQLLDAFENK------------------QNELKSSKAYYDAERRPDAIGLAVPLDMRK 53 (488) T ss_pred CCcccCCC---------HHHHHHHHHHHHHHH------------------HHHHHHHHHHHhcccchhhcCcccchhhhh Confidence 00000000 00000 000000000 000000001111100 0000 11111 Q ss_pred H-HhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCcc Q lcl|Aclame:pro 119 L-AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAF 197 (695) Q Consensus 119 ~-~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~ 197 (695) + ..+...++|||+.++=+.=+|+.+. ..+......+.+.+..+.+...|++-++.....++.+.+-.| T Consensus 54 ~~~~~n~~~~ivd~~a~~l~~~Gf~~~-----------~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~ 122 (488) T protein:vir:23 54 YLAHVGYPRTYVDAIAERQELEGFRIP-----------SANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIY 122 (488) T ss_pred hhhhcchHHHHHHHHHHhhhccceecc-----------CCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhc Confidence 1 1233446666666543332343321 111122233445666677888899889999999999999899 Q ss_pred ceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceeccccccccc----------CCceeEEEcceE Q lcl|Aclame:pro 198 GRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDF----------YKPSTWWMIGTE 267 (695) Q Consensus 198 G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~y----------g~P~~y~i~~~~ 267 (695) |.|+.++..+.....+ .+ + . +...|++++|.++.+..... +. .+.| +....+.+ T Consensus 123 G~a~~~v~~~~~~~~~---~~-~-----~-~~~~i~~~~p~~~~~~~d~~-~~-~~~~~~~~~~~~~~~~~~~~~~---- 186 (488) T protein:vir:23 123 GTAYITISMPDPEVDF---DV-D-----P-EVPLIRVEPPTALYAEVDPR-TR-KVLYAIRAIYGADGNEIVSATL---- 186 (488) T ss_pred CceEEEEecCCccccc---CC-C-----C-CcceEEEeccceeEEEEecC-CC-ceEEEEEEEEecCCCcEEEEEE---- Confidence 9999888754322111 00 0 1 11235556666555431100 00 0111 11111111 Q ss_pred EchhhEEEecC---------------Ccchhh---h-hcccCCCCchHHHH-HHHHHHHHHHHhHHHHHHHHHhccceee Q lcl|Aclame:pro 268 VHATRLHTIVS---------------RPVGDM---L-KPTYSFAGISMTQL-AMPYIDNWLRTRQSVSDIVKQFSVSGIL 327 (695) Q Consensus 268 iH~SRli~~~~---------------~~~p~~---~-~~~~~~~G~S~l~~-~~~~l~~~~~~~~~~~~l~~~~~~~v~k 327 (695) +.+..++.|.. ..+|-. - ......+|.|.++. +.+.+.+++++.......+.-++..... T Consensus 187 y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~ 266 (488) T protein:vir:23 187 YLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISNRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRL 266 (488) T ss_pred EecCcEEEEEecCCceEeccccccCCCCcceEEeccccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHH Confidence 01111111100 001110 0 01223579998864 5666667777776665554443332222 Q ss_pred echH--HhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCce--eEEEe-cccCChHHHHHHHHHHHHhhhcCCceeeec Q lcl|Aclame:pro 328 MDLA--QALMPGANVDLSMRAELINRYRDNRNILFLDKATEE--FFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLG 402 (695) Q Consensus 328 ~~~~--~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~--~~~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L~G 402 (695) +.+. .......+ .....++... ..+.++. ++++ |.+++ +++.+..+.+.....++++.+++|..-| | T Consensus 267 i~G~~~~~~~~~~~----~~~~~~~~~~--~~v~~~~-~g~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~-g 338 (488) T protein:vir:23 267 IFGAKPEELGINAE----TGQRMFDAYM--ARILAFE-GGEGAHAEQFSAAELRNFVDALDALDRKAASYSGLPPQYL-S 338 (488) T ss_pred HhCCCccccccccc----ccchhhhhhh--hhhccCC-CCCCceeEecCCCChHHHHHHHHHHHHHHhcccCCCHHHh-c Confidence 2111 11111100 0011111111 1122332 2333 43333 3445566667777888999999998777 4 Q ss_pred cCcccccCcchHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHHhcCC-CC---CceeEEeccccccchhHHHHHHHH Q lcl|Aclame:pro 403 ITPTGLNASSEGEIRVWYDYVR---AYQRNALQQLMNDVIVMIQLSLFGA-VD---PSIKWQWNALRELDDLEVAESRYK 475 (695) Q Consensus 403 ~sp~Glnatge~D~~nyyd~i~---~~Qe~~l~p~l~~l~~~l~~s~~g~-~~---~d~~~~f~pL~~~se~e~Aei~~~ 475 (695) .+..+ ++||+ .++.-+..+. ..++..+.+.|.+++.+++.-..+. .+ .++.+.|.+....|..+.++...+ T Consensus 339 ~~~~n-~~Sg~-Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~~k 416 (488) T protein:vir:23 339 SSSDN-PASAE-AIKAAESRLVKKVERKNKIFGGAWEQAMRLAYKMVKGGDIPTEYYRMETVWRDPSTPTYAAKADAAAK 416 (488) T ss_pred cccCc-chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccceEEecCCCCCCHHHHHHHHHH Confidence 33222 25676 3333333322 2355567889999998886543321 12 367889999999998888765544 Q ss_pred HHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhh Q lcl|Aclame:pro 476 QAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPT 555 (695) Q Consensus 476 ~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (695) .+++. .|.++.......+...... ... ......................................... T Consensus 417 l~~~g-----~~~~s~et~~~~l~~~~d~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 484 (488) T protein:vir:23 417 LFANG-----AGLIPRERGWVDMGYTIVE------REQ-MRQWLEQDQKQGLGLIGSLYGASTPEGKPGEAPVGEPPAPE 484 (488) T ss_pred HHhcc-----cccCCHHHHHHhCCCCchH------HHH-HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCC Confidence 33321 2345555554444321110 000 00000000000000000000000000000000000000000 Q ss_pred hhhhhhccccccccccCceEEEE Q lcl|Aclame:pro 556 VANVNANVKPREAGAQDAAMRAA 578 (695) Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~ 578 (695) ..++ T Consensus 485 -------------------~~~a 488 (488) T protein:vir:23 485 -------------------PDAA 488 (488) T ss_pred -------------------CCCC Confidence 0000 No 145 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=98.45 E-value=6e-07 Score=54.71 Aligned_cols=395 Identities=8% Similarity=0.032 Sum_probs=173.3 Q ss_pred cccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccC-CCCchHHHHHHH--------- Q lcl|Aclame:pro 51 ALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSS-GFPGFPTLVLLA--------- 120 (695) Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~gy~~~a~~~--------- 120 (695) ..+. +.++.+. --..+..+.+......++-+-.. .-.-|..+..|+ T Consensus 1 ~~~~------------------~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~ 56 (479) T protein:vir:79 1 MLNI------------------YISETDL------IKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNK 56 (479) T ss_pred CCCc------------------eecccce------EeeccccCChhHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccc Confidence 0000 0000000 00000000000000000000000 000112222221 Q ss_pred ---------------------hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHH Q lcl|Aclame:pro 121 ---------------------QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIE 179 (695) Q Consensus 121 ---------------------~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 179 (695) .+.+.+.||+..+.=++.+...+. ..+.+.. .+.+.|. T Consensus 57 ~~~~~~~~~~~~~~~~~~~ki~~~~~~~Ivd~~~~~l~g~p~~~~--------------------~~~~~~~-~~~~~~~ 115 (479) T protein:vir:79 57 RRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFN--------------------ADDDNLT-KLLNDLL 115 (479) T ss_pred ccccccccccccccccCcceeecchHHHHHHHHHhhhhcCCceec--------------------cCCHHHH-HHHHHHH Confidence 134445555554444444433331 1222333 3334444 Q ss_pred hhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCce Q lcl|Aclame:pro 180 RLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPS 259 (695) Q Consensus 180 ~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~ 259 (695) +=++...+.++.+.+-.||.++.++.++.++. + .+.+++|.++.|..-+. ....+.++- . T Consensus 116 ~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~-----------------~-~i~~~~p~~~~~v~d~~-~~~~~~~~i-r 175 (479) T protein:vir:79 116 GEEFDDTITELYLNASNKGVEWLHPYINRKGE-----------------F-KYVIIPAEEAIPIWDSK-RQRELVAFI-R 175 (479) T ss_pred hcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCc-----------------e-EEEEEccceeEEEEeCC-CCCceEEEE-E Confidence 45888999999999999999998887754432 1 13444444444431100 000011100 0 Q ss_pred eEEEc---ce-----EEc-hhhEEEec--CC---------------------------c-----chhhhhcccCCCCchH Q lcl|Aclame:pro 260 TWWMI---GT-----EVH-ATRLHTIV--SR---------------------------P-----VGDMLKPTYSFAGISM 296 (695) Q Consensus 260 ~y~i~---~~-----~iH-~SRli~~~--~~---------------------------~-----~p~~~~~~~~~~G~S~ 296 (695) +|.+. +. .+| ..++..|. +. + +|-. .-.++-+|.|. T Consensus 176 ~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv-~~~nn~~g~sd 254 (479) T protein:vir:79 176 FYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFI-PFKNNEKCVSD 254 (479) T ss_pred EEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEE-EecCCCCCCcc Confidence 11110 00 000 11111110 00 0 0110 11235579999 Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEE--Eecc Q lcl|Aclame:pro 297 TQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQ--FNTP 374 (695) Q Consensus 297 l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~--~~~~ 374 (695) ++.+.+.+.+++.+....+.-+..++...+.+.+... ....+....+ +. .+++.++ ++++++. .+.+ T Consensus 255 ~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~---~~~~~~~~~~------~~-~~~i~~~-~~~~~~~l~~~~~ 323 (479) T protein:vir:79 255 LTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPG---TSLQEFIDNI------RY-YKSIKVD-GGGGVDKLEINIP 323 (479) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCc---cccccchhhh------hh-ccceecC-CCCcceEEeccCC Confidence 9999999999999988888777766665555443211 1111111111 11 1233444 3455555 4566 Q ss_pred cCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHH--hcCC Q lcl|Aclame:pro 375 LSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYV---RAYQRNALQQLMNDVIVMIQLS--LFGA 449 (695) Q Consensus 375 lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i---~~~Qe~~l~p~l~~l~~~l~~s--~~g~ 449 (695) .++....++...+.|...+.+|-.-.-+ .| |+||+ .++.-+..+ ....+..++..|.+++.+++.- .-+. T Consensus 324 ~~~~~~~~~~l~~~i~~~s~~p~~~~~~---~g-n~Sg~-Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~ 398 (479) T protein:vir:79 324 VEAKKELLDRLEKNIIIFGQGVNPESQN---TG-DKSGV-ALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGN 398 (479) T ss_pred HHHHHHHHHHHHHHHHHHhCcccccccc---cc-chhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 6788999999999999999999754322 12 45666 444333222 2335666888999888887642 1121 Q ss_pred C---CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 450 V---DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDG 526 (695) Q Consensus 450 ~---~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (695) . ..++++.|++-...++++.++...+. .|.++...+...+....+. . .+....... .... T Consensus 399 ~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl---------~g~iS~et~l~~l~~v~d~------~-~E~~ri~~E-~~~~ 461 (479) T protein:vir:79 399 KSYDYKTVQITFNHSMIINEAEKIDMAAKS---------TGIVSDETIVSNHPWVEDV------N-DELERLKKQ-EDTQ 461 (479) T ss_pred CccccccceEEeCCCCCcCHHHHHHHHHHH---------hccCcHHHHHHhCCCCCCH------H-HHHHHHHHH-HHHH Confidence 1 24688999998888888887765443 2566666655444321110 0 000000000 0000 Q ss_pred hhhhhhhhhhhcccccccccCCCccchhhh Q lcl|Aclame:pro 527 VLTYVQRLAEGGDTGAPGGARAGATAPPTV 556 (695) Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (695) .. ........ . ....... T Consensus 462 ~~-~~~~~~~~---~--------~~~~~e~ 479 (479) T protein:vir:79 462 KE-YDDLIPNN---Q--------DGVIDET 479 (479) T ss_pred HH-HHhccCcc---c--------CCCcCcC Confidence 00 00000000 0 0000000 No 146 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=98.44 E-value=6.6e-07 Score=54.48 Aligned_cols=356 Identities=13% Similarity=0.061 Sum_probs=149.7 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhh-----hcccc Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLA-----RQFEV 75 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 75 (695) |- +++ .++|.+..---.|... -..+|+||..+... .....|..+..+. ..|.+ T Consensus 1 ~~-------------~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~f 58 (376) T protein:vir:10 1 MP-------------ARD--RPRAARRRRHSFIFIH-----GVLRMSKRRSRAPR--TFAAAPNPSAGSAAPARAEVFTF 58 (376) T ss_pred CC-------------CCc--cchhhhhhcccchhhc-----ccccchhccCCCcc--cchhhhhHhhhccCcceeEEEEc Confidence 11 111 1111111111112221 12335555432211 1111111111000 00110 Q ss_pred cCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccC Q lcl|Aclame:pro 76 DVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSG 155 (695) Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g 155 (695) |...|-...... .++...-.++ +||. ..+.=+.+..+++.++....++-.-+.+.++. + ...+ T Consensus 59 --g~p~~v~~~~~~--~~~~~~~~~~-~~~~-pp~~~~~La~~~~~~~~h~s~l~~k~n~l~~~-~--~Pnp-------- 121 (376) T protein:vir:10 59 --DDPTPVMNRAEI--LDYVECWSNG-EWFE-PPVSFAGLAKSFRASTHHSSALFFKANVLAST-F--RPHR-------- 121 (376) T ss_pred --CCceeccCcchh--hhhhhhhhcC-ceec-CCCCHHHHHHHHhhhHHhhhhHHHHhHHHHhc-c--CCCC-------- Confidence 000000000000 0011010110 2222 11111223334455555555554444443331 1 1000 Q ss_pred ccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEe Q lcl|Aclame:pro 156 LAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVV 235 (695) Q Consensus 156 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~ 235 (695) ... +..|.+++..--+||-+++++.-+. .|.+..|.++ T Consensus 122 ---------~lT----------------~~~f~~~v~d~ll~Gnay~~~~rn~-----------------~G~~~~L~pl 159 (376) T protein:vir:10 122 ---------WLS----------------RHAFERWALDFLTFGNGYLERRRNM-----------------VGGTLRLEPA 159 (376) T ss_pred ---------CCC----------------HHHHHHHHHHHHhcCCeEEEEEECC-----------------CCCEEEEEEe Confidence 011 1112222222236798887766432 2446677888 Q ss_pred cchhccccceecccccccccCCceeEEEc--c--eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 236 EPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTR 311 (695) Q Consensus 236 d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~--~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~ 311 (695) .+..+++.. |+. .+|++. + ..+-++-||++..... ....+|.|-++.+...+.--..+. T Consensus 160 ~~~~vr~~~----d~~-------~~~~~~~~~~~~~~~~~eViHir~~~~------~~~~yGls~~~~a~~si~l~~aa~ 222 (376) T protein:vir:10 160 LAKYVRRKA----DFN-------GFVYVNGWQERHEFEPDSVFQLVRPDI------NQEVYGLPEYLSSLHSAWLNESST 222 (376) T ss_pred CCcceEEEe----eCC-------eEEEEEcCCeEEEEccccEEEecCCCC------CCCcccccHHHHHHHHHHHHHHHH Confidence 877775531 211 133332 2 2355677888865321 234679999988888776544444 Q ss_pred HHHHHHHHHh-ccce-eeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEE-EcC--Cc--eeEEEecccC--ChHHHH Q lcl|Aclame:pro 312 QSVSDIVKQF-SVSG-ILMDLAQALMPGANVDLSMRAELINRYRDNRNILFL-DKA--TE--EFFQFNTPLS--GLDALQ 382 (695) Q Consensus 312 ~~~~~l~~~~-~~~v-~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~l-d~~--~e--~~~~~~~~ls--gl~~~~ 382 (695) .-........ .... +++.+ ..++.+..+.+.+.++-. ...+|.+.+++ ..+ ++ +|..++.+.. .+-++. T Consensus 223 ~f~~~~f~NGa~pggIl~~~d-~~l~~e~~~~lr~~~~~~-~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k 300 (376) T protein:vir:10 223 LFRRKYYENGSHAGFILYMTD-AAQKQDDVDNMRDALKNA-KGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIK 300 (376) T ss_pred HHHHHHHhccCCCceEEEecC-CCCCHHHHHHHHHHHHHh-cCccccCceeEecCCCCccceEEEEccCCHHHHHHHHHH Confidence 4444433332 2222 22221 245555556676666543 23455444444 321 23 3444443322 244455 Q ss_pred HHHHHHHHhhhcCCceeeeccCcccc--cCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEecc Q lcl|Aclame:pro 383 AQAQEQMSAVSHIPLIKLLGITPTGL--NASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNA 460 (695) Q Consensus 383 ~~~~~~iaaas~iP~t~L~G~sp~Gl--natge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~p 460 (695) ....+.||++.+||-. |+|..+.+- .++-|...+.||. +.|.|.++++-++.- .+ +.+ -++|++ T Consensus 301 ~~~~~eIa~af~VPp~-llGi~~~~t~~~sn~eq~~~~f~~-------~~L~Pl~~~ieeln~--~L---~~~-~~~F~~ 366 (376) T protein:vir:10 301 NVTRDDLLAAHRVPPQ-LLGIVPSNSGGFGTPDTAARVFGR-------NEIRPLQARFAELND--WL---GEE-VVRFDD 366 (376) T ss_pred HHhHHHHHHHhCCCHH-HhcccCCCCCCcccHHHHHHHHHH-------HHHHHHHHHHHHHHh--hc---ccc-ccccCh Confidence 5667789999999975 668765321 1334444455543 347777777654221 12 222 366776 Q ss_pred ccccchhHHH Q lcl|Aclame:pro 461 LRELDDLEVA 470 (695) Q Consensus 461 L~~~se~e~A 470 (695) ..-+....+| T Consensus 367 ~~Llr~d~ka 376 (376) T protein:vir:10 367 YEIPPAPVAA 376 (376) T ss_pred hHhhcccccC Confidence 5544444444 No 147 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=98.38 E-value=9.2e-07 Score=53.68 Aligned_cols=325 Identities=13% Similarity=0.071 Sum_probs=145.8 Q ss_pred hhhcccccccccc-cccccchhhh--hhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhC Q lcl|Aclame:pro 46 MGRRGALNALDAA-PVAEPSPSLR--LARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQL 122 (695) Q Consensus 46 ~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~ 122 (695) |++|.+..+...+ ...+..+.+- +|..|+. -...... .++...-.++ +|| ...+.=..+..+++.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~-------v~~~~~~--~~~~~~~~~~-~~~-~pp~~~~~la~~~~a~ 69 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVP-------VLDRRDI--LDYVECISNG-RWY-EPPVSFTGLAKSLRAA 69 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceE-------ecCcchh--hhhhhhhhcC-cee-cCCCCHHHHHHHHhhh Confidence 7776653221100 0111111111 1111111 1111111 0111000010 222 2222112233334445 Q ss_pred hhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEE Q lcl|Aclame:pro 123 PEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHP 202 (695) Q Consensus 123 ~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i 202 (695) +-...++-.-.....+ +++ .. ..... ..|..++..--+||-+++ T Consensus 70 ~~h~~~i~~k~n~l~~-~~~--Pn-----------------~~lt~----------------~~f~~~~~d~ll~Gnay~ 113 (344) T protein:vir:20 70 VHHSSPIYVKRNILAS-TFI--PH-----------------PWLSQ----------------QDFSRFVLDFLVFGNAFL 113 (344) T ss_pred hhhCccceehhhhHHH-hcc--CC-----------------CCCCH----------------HHHHHHHHHHHhcCCeEE Confidence 4444444332222221 110 00 00111 112111111235799888 Q ss_pred EEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc----eEEchhhEEEecC Q lcl|Aclame:pro 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG----TEVHATRLHTIVS 278 (695) Q Consensus 203 ~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~----~~iH~SRli~~~~ 278 (695) .+.-.. .|.+..|.++.+..+.... |. + .+|++.+ +.+.+..||++.. T Consensus 114 ~i~rn~-----------------~G~~~~L~pl~~~~vr~~~----~~---~----~~~~~~~~~~~~~~~~~eIiHir~ 165 (344) T protein:vir:20 114 EKRYST-----------------TGKVIRLETSPAKYTRRGV----EE---D----VYWWVPSFNEPTAFAPGSVFHLLE 165 (344) T ss_pred EEEECC-----------------CCcEEEEEEcCCceeEeee----cC---C----EEEEEccCCeEEEEcCccEEEeCC Confidence 765421 2445667777766654421 11 1 1445532 3566777888875 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHh-ccc-eeeechHHhhcchHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQF-SVS-GILMDLAQALMPGANVDLSMRAELINRYRDNR 356 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~-~~~-v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~ 356 (695) ..+ .....|.|-+......+.--..+..-.......- +.. ++++.+ ..++.+..+.+.+.++.. ...+|. T Consensus 166 ~~~------~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d-~~l~~e~~~~ik~~~~~~-~g~~n~ 237 (344) T protein:vir:20 166 PDI------NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKS-KGRNNF 237 (344) T ss_pred CCC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC-cCCCHHHHHHHHHHHHHh-cCCCCc Confidence 322 2345799998888777765444444333333222 222 233321 345666666677777653 245555 Q ss_pred eeEEEEcC---CceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCc---ccccCcchHHHHHHHHHHHHH Q lcl|Aclame:pro 357 NILFLDKA---TEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITP---TGLNASSEGEIRVWYDYVRAY 426 (695) Q Consensus 357 ~~~~ld~~---~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp---~Glnatge~D~~nyyd~i~~~ 426 (695) ..+++... .+.++....+.+. +-++-....+.||++.+||-.+| |..+ +|+ ++-|...+.|+ T Consensus 238 r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~ll-Gi~~~~t~~~-~n~e~~~~~f~------ 309 (344) T protein:vir:20 238 KNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSL-GDIEKVAKVFV------ 309 (344) T ss_pred cceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHh-ccCCCCCCcc-ccHHHHHHHHH------ Confidence 55555421 2334444444433 34445566778999999999865 7654 334 23344445554 Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccch Q lcl|Aclame:pro 427 QRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDD 466 (695) Q Consensus 427 Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se 466 (695) ++.|.|.++++-++.- .+| .+.|.|.+..|..-++ T Consensus 310 -~~~l~P~~~~~e~in~--~lg--~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 310 -RNELIPLQDRIREING--WLG--QEVIRFKNYSLDTDND 344 (344) T ss_pred -HHHHHHHHHHHHHHHH--hcC--CcccccCccccccCCC Confidence 3346777776654322 233 2346666666655554 No 148 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=98.37 E-value=9.8e-07 Score=53.52 Aligned_cols=410 Identities=9% Similarity=-0.037 Sum_probs=177.3 Q ss_pred cccccccccccchhhhhhhcccccCCCCcccccccccccccccccch-hhh-hhhccCCCC------------chHHHHH Q lcl|Aclame:pro 53 NALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSM-DAL-SFVTSSGFP------------GFPTLVL 118 (695) Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~f~------------gy~~~a~ 118 (695) =....-+. .+..-...+..+. .....+...... ...-......+ ..+ .+|.+..-+ .....+. T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~i~~-~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~ 77 (468) T protein:vir:96 1 MIDIFWPN-EKPYHERVVEQIK-PQYETQEEMILR-LITKHKENVEDITVGERYYNHQPDVLFNAPKRNVKGEIDPFKPD 77 (468) T ss_pred CccccCCc-Cceeehheeeccc-ccccCcHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccc Confidence 00000000 0111111111000 000000000000 00000000000 000 111111000 0000000 Q ss_pred HH-hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCcc Q lcl|Aclame:pro 119 LA-QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAF 197 (695) Q Consensus 119 ~~-~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~ 197 (695) .+ .+.+.+.||+..+.=++.+...+. ..+.+..+.|...++. ++...+.++.+.+-.| T Consensus 78 ~ki~~n~~~~Iv~~~~~~l~g~p~~~~--------------------~~d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~ 136 (468) T protein:vir:96 78 WRMYTNYHQNLVDQKVAYAVANPVTYG--------------------TEDEKSLKTIQEVLNH-KWDDKLVDILTAASNK 136 (468) T ss_pred cccccchHHHHHHHHHhhhccCCceec--------------------cCChHHHHHHHHHHhc-CHHHHHHHHHHHHhhc Confidence 00 133444455544433333332221 1234455566666543 6778888999999999 Q ss_pred ceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCcee----EEEcce---EE-c Q lcl|Aclame:pro 198 GRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPST----WWMIGT---EV-H 269 (695) Q Consensus 198 G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~----y~i~~~---~i-H 269 (695) |.+++++.++.++. + .+.+++|.++.|. ++ |+ .+++|.+ |.+.+. .+ . T Consensus 137 G~~~~~v~~d~~~~-----------------~-~i~~~~p~~~~~v-~~--~~---~~~~~~~~ir~~~~~~~~~~~~~~ 192 (468) T protein:vir:96 137 GVEWIQPYVDEQGE-----------------F-KTFRVPAEQAIPI-WT--NK---ERDELKAFIRLYELDGGERVEYWT 192 (468) T ss_pred CeEEEEEEEcCCCc-----------------e-EEEEEcccceEEE-Ec--CC---CCCceEEEEEEEEecCceEEEEEe Confidence 99998887754432 1 1344454444432 11 11 1122211 111110 11 1 Q ss_pred hhhEEEec--C----------------------C-----cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH Q lcl|Aclame:pro 270 ATRLHTIV--S----------------------R-----PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) Q Consensus 270 ~SRli~~~--~----------------------~-----~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~ 320 (695) ..++.++. + . .+|-. .-.++-.|.|.++.+.+.+.+++.+....+..+.. T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv-~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~ 271 (468) T protein:vir:96 193 ANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFI-PFKNNPQEVSDLFMYKTIIDAMDKRLSDTQNTFDE 271 (468) T ss_pred CCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEE-EecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 11111111 0 0 01111 01234569999999999999999999888887777 Q ss_pred hccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC-CceeEEE--ecccCChHHHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA-TEEFFQF--NTPLSGLDALQAQAQEQMSAVSHIPL 397 (695) Q Consensus 321 ~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~-~e~~~~~--~~~lsgl~~~~~~~~~~iaaas~iP~ 397 (695) ++...+.+.+... .+ ....... ++ ..+++.++.+ +.+++.+ +.+.++....++...+.|...+++|- T Consensus 272 ~~~p~lv~~g~~~--~~-~~~~~~~------~~-~~~~i~~~~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 341 (468) T protein:vir:96 272 ATELIYVLKGYEG--ED-LEEFMYN------LK-YYKAINVDGDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVD 341 (468) T ss_pred hcCceeeeecCCc--cc-cchhhhh------hh-cCceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccc Confidence 7766665543221 11 1111111 12 2334555432 2234444 45567899999999999999999996 Q ss_pred eeeeccCcccccCcchHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHH Q lcl|Aclame:pro 398 IKLLGITPTGLNASSEGEIRVWYDYV--RAYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRY 474 (695) Q Consensus 398 t~L~G~sp~Glnatge~D~~nyyd~i--~~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~ 474 (695) .-. + +- |=|.||+.=..-|.... ....+..++..|++++.++..-..... ..++.+.|++-...++.+.+++.. T Consensus 342 ~~~-~-~~-~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~i~f~~~~p~d~~e~a~~~~ 418 (468) T protein:vir:96 342 FQQ-D-KF-GNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSIKVQDVEITFNFNVMVNELEQSQIGV 418 (468) T ss_pred ccc-c-cc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCCcCHHHHHHHHH Confidence 422 2 22 23677774323333332 234566789999999988765432222 246889999888877777665322 Q ss_pred HHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccc Q lcl|Aclame:pro 475 KQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGA 546 (695) Q Consensus 475 ~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (695) ..|.++...+...+....+ .. .+........... ........+. ..-.+ . T Consensus 419 ----------~~g~iS~et~i~~l~~v~D------~~-~E~~ri~~E~~~~-~~~~~~~~~~-~~~~~---~ 468 (468) T protein:vir:96 419 ----------NSQYLSKETVVTNHPWVDD------PV-AEMERIDQEELAL-PSIEEGLNGK-ENNEP---T 468 (468) T ss_pred ----------hcCCCchHHHHHhCCCCCC------HH-HHHHHHHHHHHHH-HHHhhccCCC-CCCCC---C Confidence 2477777666554422111 00 0110000000000 0000000000 00000 0 No 149 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=98.36 E-value=6.3e-07 Score=54.58 Aligned_cols=331 Identities=9% Similarity=0.004 Sum_probs=148.4 Q ss_pred hhhcccccccc-cccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALD-AAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~ 124 (695) |++|.+.++.. ..........+-+|..|+..+++. ..+ ++...-.+.-+||.. .+.=..++.+++.++. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------~~~--~~~~~~~~~~~~~~p-p~~~~~la~l~~~~~~ 70 (346) T protein:vir:10 1 MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRA-------DIL--NYLECSAMYEKWYNP-PMSFDGLAKSLRSSTH 70 (346) T ss_pred CCcccCCCCCcccccccccCeEEEecCCcceecCch-------hHH--HHHHHhhcCCceEec-CCCHHHHHHHHHhhhh Confidence 77765533211 111111111111222222111110 000 000000000012221 1111122333333433 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYF 204 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i 204 (695) -..++..-.....+- .+ .. .... . +..|.+++..--+||-+++.+ T Consensus 71 h~~~i~~k~n~l~~l-~~---------------~P---n~~~------------t----~~~f~~~~~d~ll~Gnay~~i 115 (346) T protein:vir:10 71 HESAIITKANILLST-CE---------------VD---SRYL------------S----RRDLSSFVKDYLVFGNAYFEV 115 (346) T ss_pred cchhhhhhhhhHHHH-Hh---------------CC---CCCC------------C----HHHHHHHHHHHHhcCCeEEEE Confidence 222222211111110 00 00 0000 0 112222222223689888776 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcce--EEchhhEEEecCCcch Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGT--EVHATRLHTIVSRPVG 282 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~--~iH~SRli~~~~~~~p 282 (695) .-+. .|.+..|.++.+..+++... .|. | .-..+.+.|+ .+-++.||++....+ T Consensus 116 ~r~~-----------------~G~~~~L~pl~~~~v~~~~~--~~~----~-~~~~~~~~g~~~~~~~~dIih~r~~~~- 170 (346) T protein:vir:10 116 VRNR-----------------LGQVQRIESPLAKYVRKGLE--AGQ----F-YYVPQRFDHQEHEFAKGSIYHLLEPDI- 170 (346) T ss_pred EEcC-----------------CCcEEEEEEecCCceEEEEc--CCe----E-EEEEEccCCeEEEEecccEEEecCCCC- Confidence 5422 23456788888887765321 121 1 0012223343 456777888875432 Q ss_pred hhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHh-cccee-eechHHhhcchHHHHHHHHHHHHHHhcCCcee-E Q lcl|Aclame:pro 283 DMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQF-SVSGI-LMDLAQALMPGANVDLSMRAELINRYRDNRNI-L 359 (695) Q Consensus 283 ~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~-~~~v~-k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~-~ 359 (695) .....|.|.+..+...+.--..+........... +...+ ++.. ..++.+..+.+.+.++.. ...+|.+. + T Consensus 171 -----~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d-~~l~~e~~~~i~~~~~~~-~g~~n~~~~~ 243 (346) T protein:vir:10 171 -----NQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSD-ASQKQEDVENIRQQLKQS-KGVGNFKNLF 243 (346) T ss_pred -----CCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC-CCCCHHHHHHHHHHHHHh-cCccccCcee Confidence 1235799999888888776666655555544432 33332 2221 235555566677766654 23455554 4 Q ss_pred EEEcC--CceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCcc---cccCcchHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 360 FLDKA--TEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRAYQRNA 430 (695) Q Consensus 360 ~ld~~--~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp~---Glnatge~D~~nyyd~i~~~Qe~~ 430 (695) ++..+ .+.++....+.+. +-++.....++||++.+||-..| |..++ |+ ++-|...+.|+ ++. T Consensus 244 vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~ll-G~~~~~~~~~-s~~e~~~~~f~-------~~~ 314 (346) T protein:vir:10 244 VHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLM-GIIPNNTGGF-GNVADAAEVFF-------ITE 314 (346) T ss_pred EecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHh-cccCCCCCCc-ccHHHHHHHHH-------HHH Confidence 44321 2334444443333 33345566788999999999855 76543 34 33444455564 345 Q ss_pred hhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhH Q lcl|Aclame:pro 431 LQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLE 468 (695) Q Consensus 431 l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e 468 (695) |.|.++++-++. ..+| .+ .+.|++..-+..+| T Consensus 315 l~P~~~~iee~n--~~L~---~e-~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 315 IEPLQERLKEFN--QWLG---QE-VIKFKPSKLLQRTQ 346 (346) T ss_pred HHHHHHHHHHHH--hhcc---cc-eeeechhhhcccCC Confidence 788777775432 1222 12 36788766666655 No 150 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=98.34 E-value=1.2e-06 Score=53.04 Aligned_cols=402 Identities=10% Similarity=0.009 Sum_probs=171.8 Q ss_pred ccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHh---------- Q lcl|Aclame:pro 52 LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQ---------- 121 (695) Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~---------- 121 (695) ++-. |+... .-+. ...-+...... + ++-+ ...-.-|..+..|+. T Consensus 1 ~~~~-------~~~~~---~~~~--~~~~~~~~i~~----~---------i~~~-~~~~~r~~~~~~yy~g~~~i~~~~~ 54 (453) T protein:vir:73 1 MNLK-------PIKLM---TYSR--DEEITDKVVND----F---------MKKH-QEEVERYEYLGNMYKGIMEISSQKA 54 (453) T ss_pred Cccc-------cceee---eccc--cccCCHHHHHH----H---------HHHH-HHHHHHHHHHHHHhccccchhcCCC Confidence 1100 00000 0000 00000000000 0 0000 000001111222211 Q ss_pred -----------ChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHH Q lcl|Aclame:pro 122 -----------LPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTT 190 (695) Q Consensus 122 -----------~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a 190 (695) +...++||+..+.=++-+...+ . ..+.+..+.|+..++.-++...+.++ T Consensus 55 ~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~---------------~-----~~d~~~~~~l~~~~~~n~~~~~~~~~ 114 (453) T protein:vir:73 55 KDSWKPDNRLTNNFAKYIVDTFVGYFNGIPIKK---------------T-----HDDKSVLEAMQLFDNLNDMEDEESEL 114 (453) T ss_pred CCccCccceeecchHHHHHHHhhhhhcccCcee---------------e-----cCChHHHHHHHHHHHhcChhHHHHHH Confidence 2333444444333232222222 1 22445556788888888899999999 Q ss_pred HHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEE--cceE- Q lcl|Aclame:pro 191 VIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM--IGTE- 267 (695) Q Consensus 191 ~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i--~~~~- 267 (695) .+.+-.||.+++++..+.++.. .+.+++|.++.|..- |+....+---..|.. .+.. T Consensus 115 ~~~~~~~G~~~~~v~~d~~~~~------------------~i~~~~p~~~~~v~d---d~~~~~~~~~i~~~~~~~~~~~ 173 (453) T protein:vir:73 115 AKIACVYGRAYELMYQNESTES------------------EVIYCSPLNVFMVYD---DSIKQKPLFAVYYGFDEEGNLS 173 (453) T ss_pred HHHHHhcCeEEEEEEeCCCCce------------------EEEEEcccceEEEEe---CCCCceeEEEEEEEEecCceEE Confidence 9999999999999887654321 122333333332211 110000000000000 0000 Q ss_pred ---EchhhEEEecCC---------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeec Q lcl|Aclame:pro 268 ---VHATRLHTIVSR---------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMD 329 (695) Q Consensus 268 ---iH~SRli~~~~~---------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~ 329 (695) +-..+++.|.+. .+|-. .-.++-.|.|.++.+.+.+.+++.+....+..+..++...+.+. T Consensus 174 ~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~ 252 (453) T protein:vir:73 174 GTVYTLLETISITGKAGEVKFGESTYNVYSDLPIV-EYNFNEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVFL 252 (453) T ss_pred EEEEeCCeEEEEEecCCceEEccceeccCCceeEE-EecCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeeee Confidence 001111221110 01111 11234579999999999999999999888887777766655543 Q ss_pred hHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCcee--EEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCccc Q lcl|Aclame:pro 330 LAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEF--FQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTG 407 (695) Q Consensus 330 ~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~--~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~G 407 (695) +... .......+ ++...+.......+....+..+.++ -+.+.+.+++...++...+.|...+++|-.-.-+ .| T Consensus 253 g~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~---~g 327 (453) T protein:vir:73 253 GAEV-DEEDAKNI-KDNRLINFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAANISDEN---FG 327 (453) T ss_pred cCCC-Cchhhhcc-cccccccccccccccccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcccCccc---cc Confidence 3211 11111111 1111111110000111111223334 4445667889999999999999999999633221 12 Q ss_pred ccCcchHHHHH-HHHHH--HHHHhhhhhHHHHHHHHHHHHH--hcCCC--CCceeEEeccccccchhHHHHHHHHHHHhh Q lcl|Aclame:pro 408 LNASSEGEIRV-WYDYV--RAYQRNALQQLMNDVIVMIQLS--LFGAV--DPSIKWQWNALRELDDLEVAESRYKQAQSD 480 (695) Q Consensus 408 lnatge~D~~n-yyd~i--~~~Qe~~l~p~l~~l~~~l~~s--~~g~~--~~d~~~~f~pL~~~se~e~Aei~~~~a~~~ 480 (695) |+||+ .++. |...+ .+.++..++..|++++.+++.- ..|.. ..++++.|+|....+..+.+++..+.+ T Consensus 328 -n~Sg~-Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~--- 402 (453) T protein:vir:73 328 -NSSGV-ALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASNKDAWKDIEYTFTRNEPKDIKEQAETANILK--- 402 (453) T ss_pred -CccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHHh--- Confidence 45666 4433 33222 2234566788888888877532 12222 236789999998888888877654432 Q ss_pred hhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCC Q lcl|Aclame:pro 481 VLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARA 548 (695) Q Consensus 481 ~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (695) |.++...+...+....+. . ............. . ............. ..... T Consensus 403 ------giis~et~~~~~~~~~d~------~-~E~~ri~~E~~~~-~--~~~~~~~~~~~~~-~~~~~ 453 (453) T protein:vir:73 403 ------GITSEETALSVISVIPDV------Q-AEMEKIKKKKLLQ-L--SLTRTSNLVRMKQ-MRGNL 453 (453) T ss_pred ------ccCcHHHHHHhCCCCCCH------H-HHHHHHHHHHHHH-H--HHHHhccCCcchh-hhcCC Confidence 455555544433221110 0 0000000000000 0 0000000000000 00000 No 151 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=98.34 E-value=1.2e-06 Score=52.99 Aligned_cols=424 Identities=10% Similarity=0.011 Sum_probs=171.7 Q ss_pred ccccccc-chhhhhhhcccccCCCCcccccccccccccccccchhhhh-hhccCCCCchHHHHHHH--hC---------- Q lcl|Aclame:pro 57 AAPVAEP-SPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALS-FVTSSGFPGFPTLVLLA--QL---------- 122 (695) Q Consensus 57 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~gy~~~a~~~--~~---------- 122 (695) .+-.+.- +........+..+. ..... ......+. +.....-.-|..+..|+ .| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~i~~~i~~~~~~~~~~~~~YY~g~~~i~~~~~~~~ 67 (503) T protein:vir:59 1 MADIYPLGKTHTEELNEIIVES-----------AKEIA--EPDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYY 67 (503) T ss_pred CcccccCChhhHHhHHHhhhhh-----------hhhcc--chhHHHHHHHHHhhcHHHHHHHHHHhccccchhhccchhc Confidence 0000000 00000000000000 00000 00000000 00000001123333332 12 Q ss_pred -------------------hhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhch Q lcl|Aclame:pro 123 -------------------PEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRI 183 (695) Q Consensus 123 -------------------~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~ 183 (695) .++++||+..+.=++- .++++. ..+.+..+.++. +.+-++ T Consensus 68 ~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~yl~g---------------~~~~~~-----~~d~~~~~~l~~-~~~n~~ 126 (503) T protein:vir:59 68 DAAGQQLVDDTKTNNRTSHAWHKLFVDQKTQYLVG---------------EPVTFT-----SDNKTLLEYVNE-LADDDF 126 (503) T ss_pred ccccccccccccccceeecchHHHHHHHHHhhhhc---------------CCeeec-----cCcHHHHHHHHH-HHhcCH Confidence 2334444443333332 333322 123334344433 333478 Q ss_pred HHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccc--------------eeccc Q lcl|Aclame:pro 184 RDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNN--------------YNSIN 249 (695) Q Consensus 184 ~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~--------------~~~~d 249 (695) ...+.++.+.+-.||.+++++.++.++... +.+++|.++.|.. +...+ T Consensus 127 ~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~------------------i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~ 188 (503) T protein:vir:59 127 DDILNETVKNMSNKGIEYWHPFVDEEGEFD------------------YVIFPAEEMIVVYKDNTRRDILFALRYYSYKG 188 (503) T ss_pred HHHHHHHHHHHhhCCeEEEEEeecCCCceE------------------EEEEccceeEEEEeCCCCCceEEEEEEEEEec Confidence 888999999999999999999886554211 2223333322210 00000 Q ss_pred ccccc-----cCCcee---EEEcc--e-------EEchhhEEEecCC-----cchhhhhcccCCCCchHHHHHHHHHHHH Q lcl|Aclame:pro 250 PVADD-----FYKPST---WWMIG--T-------EVHATRLHTIVSR-----PVGDMLKPTYSFAGISMTQLAMPYIDNW 307 (695) Q Consensus 250 p~s~~-----yg~P~~---y~i~~--~-------~iH~SRli~~~~~-----~~p~~~~~~~~~~G~S~l~~~~~~l~~~ 307 (695) ..+.. ++.|.. |...+ . .......+.-.+. .+|-. .-.++-+|.|.++.+.+.+.++ T Consensus 189 ~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv-~~~nn~~~~sd~~~~~~liDa~ 267 (503) T protein:vir:59 189 IMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPII-PFKNNEEMVSDLKFYKDLIDNY 267 (503) T ss_pred CCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCCccceE-EecCCCCCCcchhhhHHHHHHH Confidence 00000 111100 00000 0 0000000000000 11111 1123557999999999999999 Q ss_pred HHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeE--EEecccCChHHHHHHH Q lcl|Aclame:pro 308 LRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQA 385 (695) Q Consensus 308 ~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~--~~~~~lsgl~~~~~~~ 385 (695) +.+....+.-+..++..++.+.+.... ...+....+ +. .+++.+++ +.+.+ +.+.+.+++...++.+ T Consensus 268 d~~~s~~~~~~~~~~~~~~v~~g~~~~---~~~~~~~~~------~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l 336 (503) T protein:vir:59 268 DSITSSTMDSFSDFQQIVYVLKNYDGE---NPKEFTANL------RY-HSVIKVSG-DGGVDTLRAEIPVDSAAKELERI 336 (503) T ss_pred HHHHHHHHHHHHHhcCCeeEeecCCcc---ccchhhhhh------hc-ccceeccC-CCcceeEeccCCHHHHHHHHHHH Confidence 999888888887777777765433211 111111111 11 22334443 44444 4556677899999999 Q ss_pred HHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHH--hcCCC----CCceeEE Q lcl|Aclame:pro 386 QEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYV--RAYQRNALQQLMNDVIVMIQLS--LFGAV----DPSIKWQ 457 (695) Q Consensus 386 ~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i--~~~Qe~~l~p~l~~l~~~l~~s--~~g~~----~~d~~~~ 457 (695) .+.|...+.+|-.-. + .-+| |.||+.=...|.... .+..+..++..|++++.+++.- ..+.. ..++++. T Consensus 337 ~~~i~~~s~~p~~~~-~-~~~~-~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~i~i~ 413 (503) T protein:vir:59 337 QDELYKSAQAVDNSP-E-TIGG-GATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTGKGDFNPDKELTMT 413 (503) T ss_pred HHHHHHHhcccCCCc-c-cccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEE Confidence 999888888885432 1 1112 345553222222222 2234566788898888776532 11211 2358999 Q ss_pred eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 458 WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEG 537 (695) Q Consensus 458 f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (695) |++....+..+.++ ++.+++.+|+++...+...+....+ ............ ....... .... T Consensus 414 f~~~~p~d~~~~~~-------~~~kl~~~GiiS~et~l~~l~~v~d-------~~~E~~ri~~E~-~~~~~~~---~~~~ 475 (503) T protein:vir:59 414 FTRTRIQNDSEIVQ-------SLVQGVTGGIMSKETAVARNPFVQD-------PEEELARIEEEM-NQYAEMQ---GNLL 475 (503) T ss_pred eCCCCCCCHHHHHH-------HHHHHHhCCCCchHHHHHhCCCCCC-------HHHHHHHHHHHH-HHHHhhh---cccc Confidence 99999988887644 4555666787877776655432111 000000000000 0000000 0000 Q ss_pred cccccccccCCCccchhhhhhhhhccccccccccCceEEEEE Q lcl|Aclame:pro 538 GDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAG 579 (695) Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (695) . ......................... +. T Consensus 476 ~------~~~~~~~~~~~~~~~~~~~~~~~g~--------~~ 503 (503) T protein:vir:59 476 D------DEGGDDDLEEDDPNAGAAESGGAGQ--------VS 503 (503) T ss_pred C------ccCCCCCCCcCCCCCCcccCCCCCC--------cC Confidence 0 0000000000000000000000000 00 No 152 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=98.33 E-value=1.3e-06 Score=52.86 Aligned_cols=331 Identities=13% Similarity=0.073 Sum_probs=147.8 Q ss_pred hhhcccccccccccccccchhhhh---hhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHH-HHh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRL---ARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVL-LAQ 121 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~-~~~ 121 (695) |++|-+...........+..+..+ ...|.. |-..|-...... .++...-.++ +||. ..+....|+. ++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~v~~~~~~--~~~~~~~~~~-~~~~--pp~~~~~la~~~~~ 73 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTF--DDPTPVMNRAEI--LDYVECWSNG-EWFE--PPVSFAGLAKSFRA 73 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEc--CCceeecCcchh--hhhhhhhhcC-ceec--CCCCHHHHHHHHhh Confidence 665433221110001011011100 000110 000000000000 1111111111 2222 1233333443 344 Q ss_pred ChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEE Q lcl|Aclame:pro 122 LPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAH 201 (695) Q Consensus 122 ~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~ 201 (695) ++....++-.-+.+.++ +++ .. .... +..|..++..--+||-++ T Consensus 74 ~~~h~~~l~~k~n~l~~-~~~--Pn-----------------p~~t----------------~~~f~~~v~d~ll~Gnay 117 (351) T protein:vir:79 74 STHHSSALFFKANVLAS-TFR--PH-----------------RWLS----------------RHAFERWALDFLTFGNGY 117 (351) T ss_pred hHhhhhhhhhhhhHHhh-ccc--CC-----------------CCCC----------------HHHHHHHHHHHHhcCCeE Confidence 55545544433333222 111 00 0011 111222222223589998 Q ss_pred EEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--ce--EEchhhEEEec Q lcl|Aclame:pro 202 PYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIV 277 (695) Q Consensus 202 i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~~--~iH~SRli~~~ 277 (695) +++.-++ .|.+.+|.++.+..+.+.... | .+|++. +. .+-+..||++. T Consensus 118 ~~~~r~~-----------------~G~~~~L~~l~~~~v~~~~~~--~---------~~~~~~~~g~~~~~~~~eIihir 169 (351) T protein:vir:79 118 LERRRNM-----------------VGGTLRLEPALAKYVRRKADF--S---------GFVYVNGWQERHEFEPDSVFQLV 169 (351) T ss_pred EEEEECC-----------------CCCEEEEEEeCCcceeeeecC--C---------eEEEEecCceEEEEcCccEEEeC Confidence 8876432 234567788877776543111 1 133333 32 35567788886 Q ss_pred CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhc-cce-eeechHHhhcchHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 278 SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS-VSG-ILMDLAQALMPGANVDLSMRAELINRYRDN 355 (695) Q Consensus 278 ~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~-~~v-~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n 355 (695) ...+ .....|.|-++.+...+.--..+..-...+..... ... +++.. ..++.+..+.+.+.++.. ...+| T Consensus 170 ~~~~------~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~il~~~~-~~ls~e~~~~lk~~~~~~-~G~~N 241 (351) T protein:vir:79 170 RPDI------NQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTD-AAQKQDDVDNMRDALKNA-KGPGN 241 (351) T ss_pred CCCC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC-CCCCHHHHHHHHHHHHHh-cCccc Confidence 4321 23457999998888877665555444444433322 322 23321 345666667777777653 34455 Q ss_pred ceeEEEE-cC--CceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCcc---cccCcchHHHHHHHHHHHH Q lcl|Aclame:pro 356 RNILFLD-KA--TEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRA 425 (695) Q Consensus 356 ~~~~~ld-~~--~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp~---Glnatge~D~~nyyd~i~~ 425 (695) .+.+++. .+ ++.++....+.+. +-++-....+.||++.++|-.+| |..+. |+ ++-|...+.||. T Consensus 242 ~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~ll-Gi~~~~t~~~-~n~e~~~~~f~~---- 315 (351) T protein:vir:79 242 FRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLL-GIVPSNSGGF-GTPDTAARVFGR---- 315 (351) T ss_pred cCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHh-cccCCCCCCc-ccHHHHHHHHHH---- Confidence 5544442 11 2334444444433 44555667788999999997766 77543 33 334545555653 Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHH Q lcl|Aclame:pro 426 YQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVA 470 (695) Q Consensus 426 ~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~A 470 (695) +.|.|.++++-++. ..+| .+ -++|++..-+....+| T Consensus 316 ---~~l~Pl~~~ie~ln--~~lg---~~-~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 316 ---NEIRPLQARFAELN--DWLG---DE-VVTFDDYEIPPAPVAA 351 (351) T ss_pred ---HHHHHHHHHHHHHH--hhcC---cc-eeeeChhhhccccccC Confidence 33677666664421 1122 22 3677775555444444 No 153 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=98.28 E-value=1.7e-06 Score=52.15 Aligned_cols=446 Identities=9% Similarity=0.058 Sum_probs=189.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccch------hhh-hhhcc---CCCCchHH Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSM------DAL-SFVTS---SGFPGFPT 115 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~---~~f~gy~~ 115 (695) |-.-+-|.+.- .+..-.+|-.+.. ....|.+ .+... ..+ .+... ---.-|+. T Consensus 1 ~~~~~~~~~~~---------~~~~~~~~~~~~~-------~~~~~~~--~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~ 62 (512) T protein:vir:97 1 MLKANEFETDT---------DLRENRNYLFNDE-------ANVVYTY--DGTESDLLQNINEVSKYIEHHMDYQRPRLKV 62 (512) T ss_pred CccceeccCce---------eeeeCceeeeccc-------ccccccc--CchhhhhhhhHHHHHHHHHHHHHhhHHHHHH Confidence 22222111100 0000011111110 0011111 11111 101 11000 00123444 Q ss_pred HHHHH--hChhhhhHhhcchHHHhhCCceee--------ccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHH Q lcl|Aclame:pro 116 LVLLA--QLPEYRAMHEVLADECIRTWGEAI--------GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRD 185 (695) Q Consensus 116 ~a~~~--~~~~~r~~v~~~a~d~tR~~~~i~--------~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~ 185 (695) +..|+ .|.+..+....+.+ .+.-.+|+ +....=.+.++.++. ..+.+..+.|...+++-++.. T Consensus 63 l~~YY~g~~~i~~~~~~~~~~--~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~-----~~d~~~~~~l~~~~~~n~~~~ 135 (512) T protein:vir:97 63 LSDYYEGKTKNLVELTRRKEE--YMADNRVAHDYASYISDFINGYFLGNPIQCQ-----DDDKDVLEAIEAFNDLNDVES 135 (512) T ss_pred HHHHhcccCccccccCccccc--ccCcceeecchHHHHHHHHhhhhcccCceec-----cCChHHHHHHHHHHhhcCHHH Confidence 55454 35543332222211 12112222 211111222222222 234556677888888888999 Q ss_pred HHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc- Q lcl|Aclame:pro 186 AVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI- 264 (695) Q Consensus 186 ~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~- 264 (695) .+.++.+..-.||.++.++.++.++.. .+.+++|.++.|. |+......+-++ ..+|.+. T Consensus 136 ~~~~~~~~~~i~G~ay~~vy~ded~~~------------------~i~~~~p~~~~~i-yd~~~~~~~~~~-vr~~~~~~ 195 (512) T protein:vir:97 136 HNRSLGLDLSIYGKAYELMIRNQDDET------------------RLYKSDAMSTFVI-YDNTIERNSIAG-VRYLRTKP 195 (512) T ss_pred HHHHHHHHHHhcCeEEEEEEeCCCCce------------------EEEEEcccceEEE-EcCCCCCceEEE-EEEEEeee Confidence 999999999999999999887654421 1334444444332 110000001100 0111110 Q ss_pred ----------ceE-EchhhEEEecCC---------------c-----chhhhhcccCCCCchHHHHHHHHHHHHHHHhHH Q lcl|Aclame:pro 265 ----------GTE-VHATRLHTIVSR---------------P-----VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQS 313 (695) Q Consensus 265 ----------~~~-iH~SRli~~~~~---------------~-----~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~ 313 (695) -.. +...++..|... + +|-. .-.++-.|.|.++.+.+.+.+++.+... T Consensus 196 ~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~nn~~~~gd~e~v~~liDa~d~~~S~ 274 (512) T protein:vir:97 196 IDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPIT-EFSNNERRKGDYEKVITLIDLYDNAESD 274 (512) T ss_pred ccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceE-eecCCCCCCCchhhhHHHHHHHHHHHHH Confidence 000 112222222210 0 1111 1123457999999999999999999988 Q ss_pred HHHHHHHhccceeeechHHhhcchHHHHH-HHHHHHHHHh-cCCceeEEEEcCCce--eEEEecccCChHHHHHHHHHHH Q lcl|Aclame:pro 314 VSDIVKQFSVSGILMDLAQALMPGANVDL-SMRAELINRY-RDNRNILFLDKATEE--FFQFNTPLSGLDALQAQAQEQM 389 (695) Q Consensus 314 ~~~l~~~~~~~v~k~~~~~~l~~~~~~~l-~~r~~~~~~~-~~n~~~~~ld~~~e~--~~~~~~~lsgl~~~~~~~~~~i 389 (695) .+.-+..++..++.+.+............ ..++-.+... ..+.+...-..++.+ |-+.+.+.++....++...+.| T Consensus 275 ~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I 354 (512) T protein:vir:97 275 TANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDI 354 (512) T ss_pred HHHHHHHhcCceeeeecCccCCchhhhhhhhcccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHH Confidence 88877777766666543221111110000 0011000000 001111000112233 4445677789999999999999 Q ss_pred HhhhcCCceeeeccCcccccCcchHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHH--hcCCC--C---CceeEEec Q lcl|Aclame:pro 390 SAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYV---RAYQRNALQQLMNDVIVMIQLS--LFGAV--D---PSIKWQWN 459 (695) Q Consensus 390 aaas~iP~t~L~G~sp~Glnatge~D~~nyyd~i---~~~Qe~~l~p~l~~l~~~l~~s--~~g~~--~---~d~~~~f~ 459 (695) ...+++|-.-.-+. +| |.||+ .++.=+..+ ...++..++..|++++.+++.- ..+.. + .++++.|+ T Consensus 355 ~~~s~~p~~~~~~~--~g-n~Sg~-Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~ 430 (512) T protein:vir:97 355 HMFTNTPNMKDDNF--SG-TQSGE-AMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYN 430 (512) T ss_pred HHHhCCcccCcccc--cc-cchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeC Confidence 99999998654221 22 45666 343222222 3346677899999988887542 22222 2 25789999 Q ss_pred cccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcc Q lcl|Aclame:pro 460 ALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGD 539 (695) Q Consensus 460 pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (695) |-...+..+.++...+. .|.++...+...+....+. ..+................ . ..... T Consensus 431 ~~~p~~~~e~~~~~~kl---------~giiS~et~~~~l~~v~d~-------~~E~eri~~E~~~~~~~~~-~--~~~~~ 491 (512) T protein:vir:97 431 RNLPKSLIEELKAYIDS---------GGKISQTTLMSLFSFFQDP-------ELEVKKIEEDEKESIKKAQ-K--GIYKD 491 (512) T ss_pred CCCCcCHHHHHHHHHHH---------hccCchHHHHHhCCCCCCH-------HHHHHHHHHHHHHHHHHHh-h--cccCC Confidence 98888888887665543 2566666655544321110 0011000000000000000 0 00000 Q ss_pred cccccccCCCccchhhhhhhh Q lcl|Aclame:pro 540 TGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~ 560 (695) ..................... T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~ 512 (512) T protein:vir:97 492 PRDINDDEQDDDTKDTVDKKE 512 (512) T ss_pred CCCCCCCCCCCCccccccccC Confidence 000000000000000000000 No 154 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=98.26 E-value=2e-06 Score=51.85 Aligned_cols=324 Identities=13% Similarity=0.079 Sum_probs=141.7 Q ss_pred hhhcccccccccc-cccccchhh--hhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHH-HHh Q lcl|Aclame:pro 46 MGRRGALNALDAA-PVAEPSPSL--RLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVL-LAQ 121 (695) Q Consensus 46 ~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~-~~~ 121 (695) |++|.+......+ .....+..+ -+|..|+...+ .... .++...-.++ +||. .. +....||. ++. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~-------~~~~--~~~~~~~~~~-~~~~-pp-~~~~~la~~~~a 68 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLD-------RRDI--LDYVECISNG-RWYE-PP-ISFTGLAKSLRA 68 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCceeecC-------Ccch--hHHHHhhhcC-cccc-CC-CCHHHHHHHHHh Confidence 6666543221100 011111111 11111111010 1100 0110000000 2221 11 12223333 333 Q ss_pred ChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEE Q lcl|Aclame:pro 122 LPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAH 201 (695) Q Consensus 122 ~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~ 201 (695) +.....++-.-.....+ +++ .+ ..... ..|..++..--+||-++ T Consensus 69 ~~~h~~~i~~k~n~l~~-~~~--Pn-----------------~~~t~----------------~~f~~~~~d~ll~Gnay 112 (344) T protein:vir:60 69 AVHHSSPIYVKRNILAS-TFI--PH-----------------PWLSQ----------------QDFSRFVLDFLVFGNAF 112 (344) T ss_pred hhhhccchhhhhhHHHh-hcc--CC-----------------CCCCH----------------HHHHHHHHHHHhcCCeE Confidence 43333333222222111 110 00 00110 11211111223579888 Q ss_pred EEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc----eEEchhhEEEec Q lcl|Aclame:pro 202 PYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG----TEVHATRLHTIV 277 (695) Q Consensus 202 i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~----~~iH~SRli~~~ 277 (695) +.+.-++ .|.+..|.++.+..+.... |. + .+|+|.+ +.+.+..||++. T Consensus 113 ~~i~rn~-----------------~G~~~~L~~l~~~~vr~~~----~~---~----~~~~v~~~~~~~~~~~~eIiHir 164 (344) T protein:vir:60 113 LEKRYST-----------------TGKVIRLETSPAKYTRRGV----EE---D----VYWWVPSFNEPTAFAPGSVFHLL 164 (344) T ss_pred EEEEECC-----------------CCcEEEEEEcCcceEEEee----cC---C----eEEEEccCCeEEEEcCccEEEEc Confidence 8765432 2345567777666654421 11 1 2455543 345677788887 Q ss_pred CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhc-c-ceeeechHHhhcchHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 278 SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS-V-SGILMDLAQALMPGANVDLSMRAELINRYRDN 355 (695) Q Consensus 278 ~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~-~-~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n 355 (695) ...+ .....|.|-++.+...+.--..+..-......... . .++++.+ ..++.+..+.+.+.++... ..+| T Consensus 165 ~~~~------~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~-~~ls~e~~~~ik~~~~~~~-g~~~ 236 (344) T protein:vir:60 165 EPDI------NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKSK-GRNN 236 (344) T ss_pred CCCC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC-cCCCHHHHHHHHHHHHHhc-CCCC Confidence 5321 23457999999888877765555444444333322 2 2333322 3466666666777776543 4556 Q ss_pred ceeEEEEcC---CceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCcc---cccCcchHHHHHHHHHHHH Q lcl|Aclame:pro 356 RNILFLDKA---TEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRA 425 (695) Q Consensus 356 ~~~~~ld~~---~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp~---Glnatge~D~~nyyd~i~~ 425 (695) ...+++... ++.++....+.+. +-++-....+.||++.+||-.+| |..+. |+ ++-|...+.|+. T Consensus 237 ~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~ll-Gi~~~~t~~~-~n~e~~~~~f~~---- 310 (344) T protein:vir:60 237 FKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSL-GDIEKVAKVFVR---- 310 (344) T ss_pred CcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHh-cccCCCCCcc-ccHHHHHHHHHH---- Confidence 555565321 2334444444333 34455567788999999998754 75443 34 333444555543 Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccch Q lcl|Aclame:pro 426 YQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDD 466 (695) Q Consensus 426 ~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se 466 (695) +.|.|.++++-++.. ..| .+.+.|....|..-+. T Consensus 311 ---~~L~Pl~~~~e~ln~--~lg--~~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 311 ---NELIPLQDRIREING--WLG--QEVIRFKNYSLDTDNG 344 (344) T ss_pred ---HHHHHHHHHHHHHHH--hcC--CcccccCccccCCCCC Confidence 447787776654322 223 1234444444433333 No 155 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=98.25 E-value=2e-06 Score=51.83 Aligned_cols=323 Identities=10% Similarity=0.021 Sum_probs=141.5 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHH-HhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLL-AQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~-~~~~~ 124 (695) |+.|.+..+......+......-+|..|+..+++ ...+ ++...-.+ -+||.. -+....||.+ +.++- T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~--~~~~~~~~-~~~~~p--p~~~~~la~l~~a~~~ 68 (340) T protein:vir:98 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDK-------RDIL--DYVECISN-GKWYEP--PVSFSGLAKSLRSAVH 68 (340) T ss_pred CCCCCCCccccccccCccceeEEEcCCceeecCc-------chhh--hhhhhhhc-CceecC--CCCHHHHHHHHHhccc Confidence 5544332211111100001111112222211111 1111 11111001 023321 1222334433 34443 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYF 204 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i 204 (695) ...++-.-+.+..+ +++ ..+ ... +..|..++..--+||-+++.+ T Consensus 69 h~s~i~~k~n~l~~-~~~--Pn~-----------------~lt----------------~~~f~~~~~d~ll~Gnay~~~ 112 (340) T protein:vir:98 69 HSSPIYVKRNVLAS-TYI--PHP-----------------LLS----------------RQDFSRFALDYLVFGNAFLEQ 112 (340) T ss_pred cchhhhhhhhHHhh-ccC--CCC-----------------CCC----------------HHHHHHHHHHHHhcCCeEEEE Confidence 33333332222222 111 000 001 011222222223579888776 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc----eEEchhhEEEecCCc Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG----TEVHATRLHTIVSRP 280 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~----~~iH~SRli~~~~~~ 280 (695) .-+. .|.+..|.++.+..+.... |. + .+|++.+ ..+.+.-|++|.... T Consensus 113 ~rn~-----------------~G~~~~L~pl~~~~vr~~~----~~---~----~~~~~~~~~~~~~~~~~eViHir~~~ 164 (340) T protein:vir:98 113 RHSV-----------------TGQLIKLLTSPAKYTRRGV----DD---S----VFWFVENFTQPHEFAPDTVFHLLEPD 164 (340) T ss_pred EECC-----------------CCcEEEEEEeCCceEEEcc----cC---c----EEEEEecCCeEEEEccccEEEEcCCC Confidence 5422 2345567777766654321 11 1 2455542 357788899887532 Q ss_pred chhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH-hccce-eeechHHhhcchHHHHHHHHHHHHHHhcCCcee Q lcl|Aclame:pro 281 VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ-FSVSG-ILMDLAQALMPGANVDLSMRAELINRYRDNRNI 358 (695) Q Consensus 281 ~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~-~~~~v-~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~ 358 (695) +.....|.|-+......+.--..+..-....... ++... +.+. ...++.+..+.+.+.++.. ...+|.+. T Consensus 165 ------~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~-~~~ls~e~~~~lk~~~~~~-~G~~n~~~ 236 (340) T protein:vir:98 165 ------INQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVT-DPAQSATDVESLRDAMRNS-KGLGNFKN 236 (340) T ss_pred ------CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEec-CCCCCHHHHHHHHHHHHHh-cCccccCc Confidence 1234679999988877765444333333333222 22322 2222 1345666666677777653 34455544 Q ss_pred EE-EEcC--CceeEEEecccC----ChHHHHHHHHHHHHhhhcCCceeeeccCcc---cccCcchHHHHHHHHHHHHHHh Q lcl|Aclame:pro 359 LF-LDKA--TEEFFQFNTPLS----GLDALQAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRAYQR 428 (695) Q Consensus 359 ~~-ld~~--~e~~~~~~~~ls----gl~~~~~~~~~~iaaas~iP~t~L~G~sp~---Glnatge~D~~nyyd~i~~~Qe 428 (695) ++ +..+ ++.++....+.+ .+-++-....++||++.+||-.+| |..+. |+ ++-|...+.|+. T Consensus 237 ~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~ll-Gi~~~~t~~~-sn~e~~~~~f~~------- 307 (340) T protein:vir:98 237 LFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSL-GDVEKVAKVFVR------- 307 (340) T ss_pred eeEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHh-cccCCCCCcc-ccHHHHHHHHHH------- Confidence 44 4211 233444433333 244666677889999999998754 76543 34 333444455543 Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchh Q lcl|Aclame:pro 429 NALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDL 467 (695) Q Consensus 429 ~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~ 467 (695) +.|.|.++++-++. ..+| .+ -+.|++..-++.. T Consensus 308 ~~l~Pl~~~iee~n--~~L~---~e-~~rF~~~~l~~~d 340 (340) T protein:vir:98 308 NELSPLQDRFREVN--DWLG---ME-VIRFKEYTLDNPE 340 (340) T ss_pred HHHHHHHHHHHHHH--hccc---cc-ccccCccccccCC Confidence 44788777765422 1122 22 2566665544443 No 156 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=98.20 E-value=2.7e-06 Score=51.09 Aligned_cols=425 Identities=10% Similarity=-0.053 Sum_probs=180.4 Q ss_pred cccccccccccccchhhhhhhcccccCCCCcccccccccccccccccch-hhh-hhhccCCCC---------chH---HH Q lcl|Aclame:pro 51 ALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSM-DAL-SFVTSSGFP---------GFP---TL 116 (695) Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~f~---------gy~---~~ 116 (695) .++-. ..|...|......-. .-+....++...... ..-......+ .-+ .+|.+..-+ +++ .. T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~-i~~~~~~~~~~~~~~~Yy~g~~~i~~r~~~~~~~~~~~~~~ 76 (474) T protein:vir:95 1 MFNII-RMPWDKPYGEEVVEQ--LKPQFETQEEMIIRL-IDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVYGNIDYDK 76 (474) T ss_pred Cccee-ecCCCCchhhHHHHh--hhhccCChHHHHHHH-HHHHHHHHHHHHHHHHHhcccCchhcccccccccccccccc Confidence 22222 123333322111100 000000111100000 0000000000 000 111110000 000 00 Q ss_pred HHHH-hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC Q lcl|Aclame:pro 117 VLLA-QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ 195 (695) Q Consensus 117 a~~~-~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R 195 (695) +..+ .+.+.+.||+..+.=+.-+...+ . ..+.+..+.+...++ =++...+.++.+..- T Consensus 77 ~~~ki~~n~~~~Ivd~~~~~l~g~p~~~---------------~-----~~d~~~~~~l~~~~~-n~~~~~~~e~~~~~~ 135 (474) T protein:vir:95 77 PDWRITTNFHQNLVDQKVSYVASKPVTY---------------S-----CEDESVLKIIHDVLD-TRWDNKLIDILTATS 135 (474) T ss_pred ccceeccchHHHHHHHHHhhhccCCcee---------------c-----cCchHHHHHHHHHHh-ccHHHHHHHHHHHHh Confidence 0000 13344445554443333333322 1 223344445554443 467888999999999 Q ss_pred ccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcce---E-Echh Q lcl|Aclame:pro 196 AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGT---E-VHAT 271 (695) Q Consensus 196 l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~---~-iH~S 271 (695) .||.+++++.++.++.. .+.+++|.++.|...+ .+...+.+. -.+|...+. . +... T Consensus 136 ~~G~~~~~v~~d~~~~~------------------~i~~~~p~~~~~v~d~-~~~~~~~~~-i~~~~~~~~~~~~~y~~~ 195 (474) T protein:vir:95 136 NKGIDWLQVYINENGEM------------------KLFRVPAEQAIPIWVD-KEREELKSF-IRYYKFNNEEKVEFWTDT 195 (474) T ss_pred hcCcEEEEEEecCCCce------------------EEEEEcccceEEEEcC-CCCCceEEE-EEEEEEcCeeEEEEEeCC Confidence 99999999887554321 1334444444432110 000011110 111111111 0 1112 Q ss_pred hEEEec-------------------------CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcccee Q lcl|Aclame:pro 272 RLHTIV-------------------------SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGI 326 (695) Q Consensus 272 Rli~~~-------------------------~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~ 326 (695) ++..|. -..+|-.. -.++-.|.|.++.+.+.+.+++.+....+.-+..++...+ T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~-~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~l 274 (474) T protein:vir:95 196 TVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIA-FKNNPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIY 274 (474) T ss_pred eEEEEEEcCCccccccccCcccccccccccCCCccceEe-ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcee Confidence 222111 01111111 1234579999999999999999999888887777776666 Q ss_pred eechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeE--EEecccCChHHHHHHHHHHHHhhhcCCceeeeccC Q lcl|Aclame:pro 327 LMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGIT 404 (695) Q Consensus 327 k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~--~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~s 404 (695) .+.+... .........+ ...+++.+++ +.+++ +.+.+.+++...++...++|...+++|-. .++ + T Consensus 275 v~~g~~~---~~~~~~~~~~-------~~~~~i~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~-~~~-~ 341 (474) T protein:vir:95 275 ILKGYEG---QDLEEFMRGL-------KYYKAINVDG-DGGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDF-QTD-K 341 (474) T ss_pred eeecCCc---ccchhhhhhh-------hccceeeccC-CCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccc-ccc-c Confidence 5443211 1111111111 1233444543 44544 45577789999999999999999999952 222 2 Q ss_pred cccccCcchHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHHHhhh Q lcl|Aclame:pro 405 PTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDV 481 (695) Q Consensus 405 p~Glnatge~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~ 481 (695) .+| |.||..=...|..... ...+..++..|++++.++..-..... ..++++.|++-...++++.++.. T Consensus 342 ~~~-n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~v~f~~~~p~d~~e~a~~~-------- 412 (474) T protein:vir:95 342 FGS-APSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNLKMDVKDIEISFNFNRMMNDAEQSQII-------- 412 (474) T ss_pred ccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCCCcCHHHHHHHH-------- Confidence 222 4566642233333322 33556688999999988764332222 34688999888777777766532 Q ss_pred hhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhh Q lcl|Aclame:pro 482 LYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNA 561 (695) Q Consensus 482 ~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (695) ..+|.++...+...+....+. .. ....... ........... . .... ................ T Consensus 413 --~~~g~iS~et~i~~l~~v~d~------~~-E~~ri~~----E~~~~~~~~~~--~--~~~~-~d~~~~~~~~~~~~~~ 474 (474) T protein:vir:95 413 --AQSQYLSRETLVKSSPLVDDY------KA-ELERIEQ----EQMEYNKQLPN--L--DDGG-ADGAQQQERSNDKESE 474 (474) T ss_pred --HhcCCCchHHHHHhCCCCCCH------HH-HHHHHHH----HHHHHHhcccc--c--cccc-CCCCcCCCCCccCCCC Confidence 224777776665544321110 00 0000000 00000000000 0 0000 0000000000000000 No 157 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=98.20 E-value=2.7e-06 Score=51.07 Aligned_cols=398 Identities=9% Similarity=-0.019 Sum_probs=178.0 Q ss_pred cccCCCCccccccccccc--ccccc-cchhhh-hhhc--cCCCCchHHHHHHH--hC----------------------- Q lcl|Aclame:pro 74 EVDVSNYTPRERRAASYA--LDFNG-TSMDAL-SFVT--SSGFPGFPTLVLLA--QL----------------------- 122 (695) Q Consensus 74 ~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~--~~~f~gy~~~a~~~--~~----------------------- 122 (695) .+...... +...+..+. +.... ....-+ .+.. ..--.-|..+..|+ .| T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~k 79 (474) T protein:vir:96 1 MIVIFWPN-EKPYHERVVEQIKPKYETQEEMIIRLINDHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGEIDPLKPDWR 79 (474) T ss_pred CeeeccCC-CchhhhhHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhccchhcccccccccccchh Confidence 11111110 000111000 00000 000000 0000 00001122222222 12 Q ss_pred ---hhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccce Q lcl|Aclame:pro 123 ---PEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGR 199 (695) Q Consensus 123 ---~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~ 199 (695) .+++.||+..+.=++-+... +. ..+.+..+.|...++. +....+.++.+.+-.||. T Consensus 80 i~~n~~~~Ivd~~~~~l~g~p~~---------------~~-----~~d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~ 138 (474) T protein:vir:96 80 MFTNYHQNLVDQKVAYAVANPVT---------------FS-----SDDDKSLKTIQEVLNH-KWDDKLVDILTAASNKGI 138 (474) T ss_pred cccchHHHHHHhhhhhhcccCce---------------ee-----cCchHHHHHHHHHHhc-CHHHHHHHHHHHHHhcCe Confidence 23333333333222222222 21 2234555566655543 677788888888889999 Q ss_pred EEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCce----eEEEcce---EEc-hh Q lcl|Aclame:pro 200 AHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPS----TWWMIGT---EVH-AT 271 (695) Q Consensus 200 ~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~----~y~i~~~---~iH-~S 271 (695) +++++.++.++. + .+.+++|.++.|..-+ . .+++|. +|.+.+. .++ .. T Consensus 139 ~~~~~y~d~~~~-----------------~-~i~~~~p~~~~~v~d~---~---~~~~~~~~vr~~~~~~~~~~~~yt~~ 194 (474) T protein:vir:96 139 EWLQPYIDENGE-----------------F-KTFRVPAEQAIPIWTN---K---ERDTLKAFIRYYRLDGAERVEYWTDS 194 (474) T ss_pred eEEEEEecCCCc-----------------e-EEEEEcccceEEEEcC---C---CCCceEEEEEEEeecCceEEEEEeCC Confidence 999888754432 1 1344455444432110 0 111111 1111110 000 01 Q ss_pred hEEEec------------------------C-----CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhc Q lcl|Aclame:pro 272 RLHTIV------------------------S-----RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS 322 (695) Q Consensus 272 Rli~~~------------------------~-----~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~ 322 (695) ++..|. . ..+|-. .-.++-.|.|.++.+.+.+.+++.+....+.-+..++ T Consensus 195 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv-~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~ 273 (474) T protein:vir:96 195 DVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFI-PFKNNPQEMSDLFMYKTIIDAMDKRLSDTQNTFDEST 273 (474) T ss_pred eEEEEEecCCceeeccccccccccccccccccccCCCceeEE-EeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 111110 0 001111 0123456899999999999999999999888888877 Q ss_pred cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEE--ecccCChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 323 VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQF--NTPLSGLDALQAQAQEQMSAVSHIPLIKL 400 (695) Q Consensus 323 ~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~--~~~lsgl~~~~~~~~~~iaaas~iP~t~L 400 (695) ...+.+.+...-. ..+... .++. .+++.+++++.+++.+ +.+.++....++...+.|...+++|-.-. T Consensus 274 ~~~lv~~g~~~~~---~~~~~~------~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~ 343 (474) T protein:vir:96 274 ELIYILKGYEGQD---LDEFMR------NLKY-YKAINVDGDGSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQQ 343 (474) T ss_pred cceeeeecCCccc---ccchhh------hhhc-CceEEecCCCCceeEEeecCChHHHHHHHHHHHHHHHHHhCCccccc Confidence 7766654332111 111111 1111 2345555444455554 56677999999999999999999996533 Q ss_pred eccCcccccCcchHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHHHHH Q lcl|Aclame:pro 401 LGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQA 477 (695) Q Consensus 401 ~G~sp~Glnatge~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a 477 (695) -+ - |=|.||..=...|...+. ...+..++..|.+++.++..-..... ..++.+.|++-...++.+.+++. T Consensus 344 ~~--~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~~~~~~~~i~i~f~~~~p~~~~e~~~~~---- 416 (474) T protein:vir:96 344 DK--F-GNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLNIKVQDVEITFNFNVMVNELEQSQIG---- 416 (474) T ss_pred cc--c-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCCCcCHHHHHHHH---- Confidence 22 1 235667742233333322 44566789999999988764432222 24688999998887877766542 Q ss_pred HhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhh Q lcl|Aclame:pro 478 QSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVA 557 (695) Q Consensus 478 ~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (695) ..+|.++...+...+....+. . .+........ ............ .............. T Consensus 417 ------~~ag~iS~et~~~~~~~v~d~------~-~E~~ri~~E~-~e~~~~~~~~~~--------~~~~~~~d~~~e~~ 474 (474) T protein:vir:96 417 ------VQSQYLSKETVVTNHPWVDDP------V-AELERIEQDN-IDFNKQLPPLEG--------DANGRAQDNESETN 474 (474) T ss_pred ------HhcCCCchHHHHHhCCCCCCH------H-HHHHHHHHHH-HHHHhccccccc--------ccccccCCCcccCC Confidence 234677777666554321110 0 0000000000 000000000000 00000000000000 No 158 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=98.19 E-value=2.8e-06 Score=51.01 Aligned_cols=423 Identities=10% Similarity=-0.015 Sum_probs=182.6 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccccc---ccccccccccchhhhhhhccCCCCch--------- Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRA---ASYALDFNGTSMDALSFVTSSGFPGF--------- 113 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~gy--------- 113 (695) |-..- .-|...|...-. +.... .........-. ..+. ...++-.....+|.+..-+-+ T Consensus 1 ~~~~~------~~~~~~~~~~~~-~~~~~--~~~~~~~~~i~~~i~~~~-~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~ 70 (474) T protein:vir:95 1 MINII------RMPWDKPYGEEV-VEQMK--PKVETQEEMIIRLINNHK-QKLKDINVGQKYYDKDNDINYQAYKQDLHG 70 (474) T ss_pred Ccccc------cCCCCCCCCcch-hhhcc--ccccchHHHHHHHHHHHH-HHHHHHHHHHHHhcccCccccccchhhhcc Confidence 11100 011111110000 00000 00000000000 0000 000000001111211110000 Q ss_pred ---HHHHHHH-hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHH Q lcl|Aclame:pro 114 ---PTLVLLA-QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRT 189 (695) Q Consensus 114 ---~~~a~~~-~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 189 (695) ...+..+ .+.+.+.||+..+.=++-+...+. ..+.+..+.|...++ -+....+.+ T Consensus 71 ~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~--------------------~~~~~~~~~l~~~~~-n~~~~~~~~ 129 (474) T protein:vir:95 71 NIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTYA--------------------HDDDKVLDVIHQVLD-TRWDNKLID 129 (474) T ss_pred cccccccccccccchHHHHHHhhhhhhcccCceec--------------------cCChHHHHHHHHHHh-ccHHHHHHH Confidence 0000000 134555566655544443333331 123334445555443 467888999 Q ss_pred HHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcce--- Q lcl|Aclame:pro 190 TVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGT--- 266 (695) Q Consensus 190 a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~--- 266 (695) +.+..-.||.++.++.++.++.. .+.+++|.++.|.. +..+...+.++ -.+|.+.++ T Consensus 130 l~~~~~~~G~~~~~~~~d~~~~~------------------~i~~~~p~~~~~v~-d~~~~~~~~a~-ir~~~~~~~~~~ 189 (474) T protein:vir:95 130 ILTAASNKGIDWLQVYINEDGEL------------------KLFRVPAEQAIPIW-TDKEREQLNAF-IRIFTFNGETKV 189 (474) T ss_pred HHHHHhhCCeEEEEeeeCCCCce------------------EEEEEcccceEEEE-cCCCCCceEEE-EEEEeecCeeEE Confidence 99989999999999887554321 13445555544431 10011111111 122233221 Q ss_pred EEc-hhhEEEecC--C-----------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH Q lcl|Aclame:pro 267 EVH-ATRLHTIVS--R-----------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) Q Consensus 267 ~iH-~SRli~~~~--~-----------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~ 320 (695) .|| ..++..|.. . .+|-. .-.++-.|.|.++.+.+.+.+++.+....+.-+.. T Consensus 190 ~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv-~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~ 268 (474) T protein:vir:95 190 EYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFI-AFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDE 268 (474) T ss_pred EEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceE-EecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 121 223332210 0 01111 11234568999999999999999999888888877 Q ss_pred hccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeE--EEecccCChHHHHHHHHHHHHhhhcCCce Q lcl|Aclame:pro 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQAQEQMSAVSHIPLI 398 (695) Q Consensus 321 ~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~--~~~~~lsgl~~~~~~~~~~iaaas~iP~t 398 (695) ++...+.+.+... ....+.... ++.+ +++.++ ++.+++ +.+.+.+++...++...+.|...+++|-. T Consensus 269 ~~~p~lv~~g~~~---~~~~~~~~~------~~~~-~~i~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~ 337 (474) T protein:vir:95 269 SVELIYILRGYEG---EDLSEFMEG------LKYY-KAINVS-SDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDF 337 (474) T ss_pred hhcchhhhcCCCc---ccccchhhh------hhcc-ceeecc-CCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCc Confidence 7766655433211 111111111 1111 233343 244444 45677789999999999999999999965 Q ss_pred eeeccCcccccCcchHHHHH-HHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHH Q lcl|Aclame:pro 399 KLLGITPTGLNASSEGEIRV-WYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRY 474 (695) Q Consensus 399 ~L~G~sp~Glnatge~D~~n-yyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~ 474 (695) -.-+ -+| |.||+ .++. |..... ..++..++..|++++.++..-..... ..++.+.|++-...+..+.+++.. T Consensus 338 ~~~~--~~~-n~Sg~-Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~~~~ 413 (474) T protein:vir:95 338 QTDK--FGS-ATSGI-ALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQIGA 413 (474) T ss_pred cccc--ccc-ccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHHHHH Confidence 4322 123 45666 3432 222222 34667789999999998765332222 246889999988888877776532 Q ss_pred HHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchh Q lcl|Aclame:pro 475 KQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPP 554 (695) Q Consensus 475 ~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (695) ..|.++...+...+....+. ..+........ ................ ........ T Consensus 414 ----------~~giiS~et~~~~lp~v~D~-------~~E~eri~~E~-~~~~~~~~~~~~~~~~-------~~~~~~~~ 468 (474) T protein:vir:95 414 ----------QSQYLSKETLVRHHPWVDDP-------KAELERLDEEQ-LELNKQLPNLDDGGAD-------GAQQQQQS 468 (474) T ss_pred ----------HcCCCChHHHHHhCCCCCCH-------HHHHHHHHHHH-HHHHhhccccccccCC-------CCCCcCCC Confidence 24777777665554321110 00000000000 0000000000000000 00000000 Q ss_pred hhhhhh Q lcl|Aclame:pro 555 TVANVN 560 (695) Q Consensus 555 ~~~~~~ 560 (695) ...... T Consensus 469 ~~~e~~ 474 (474) T protein:vir:95 469 ENNQSK 474 (474) T ss_pred CccccC Confidence 000000 No 159 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=98.19 E-value=2.8e-06 Score=51.01 Aligned_cols=423 Identities=10% Similarity=-0.015 Sum_probs=182.6 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccccc---ccccccccccchhhhhhhccCCCCch--------- Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRA---ASYALDFNGTSMDALSFVTSSGFPGF--------- 113 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~gy--------- 113 (695) |-..- .-|...|...-. +.... .........-. ..+. ...++-.....+|.+..-+-+ T Consensus 1 ~~~~~------~~~~~~~~~~~~-~~~~~--~~~~~~~~~i~~~i~~~~-~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~ 70 (474) T protein:vir:96 1 MINII------RMPWDKPYGEEV-VEQMK--PKVETQEEMIIRLINNHK-QKLKDINVGQKYYDKDNDINYQAYKQDLHG 70 (474) T ss_pred Ccccc------cCCCCCCCCcch-hhhcc--ccccchHHHHHHHHHHHH-HHHHHHHHHHHHhcccCccccccchhhhcc Confidence 11100 011111110000 00000 00000000000 0000 000000001111211110000 Q ss_pred ---HHHHHHH-hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHH Q lcl|Aclame:pro 114 ---PTLVLLA-QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRT 189 (695) Q Consensus 114 ---~~~a~~~-~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 189 (695) ...+..+ .+.+.+.||+..+.=++-+...+. ..+.+..+.|...++ -+....+.+ T Consensus 71 ~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~--------------------~~~~~~~~~l~~~~~-n~~~~~~~~ 129 (474) T protein:vir:96 71 NIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTYA--------------------HDDDKVLDVIHQVLD-TRWDNKLID 129 (474) T ss_pred cccccccccccccchHHHHHHhhhhhhcccCceec--------------------cCChHHHHHHHHHHh-ccHHHHHHH Confidence 0000000 134555566655544443333331 123334445555443 467888999 Q ss_pred HHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcce--- Q lcl|Aclame:pro 190 TVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGT--- 266 (695) Q Consensus 190 a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~--- 266 (695) +.+..-.||.++.++.++.++.. .+.+++|.++.|.. +..+...+.++ -.+|.+.++ T Consensus 130 l~~~~~~~G~~~~~~~~d~~~~~------------------~i~~~~p~~~~~v~-d~~~~~~~~a~-ir~~~~~~~~~~ 189 (474) T protein:vir:96 130 ILTAASNKGIDWLQVYINEDGEL------------------KLFRVPAEQAIPIW-TDKEREQLNAF-IRIFTFNGETKV 189 (474) T ss_pred HHHHHhhCCeEEEEeeeCCCCce------------------EEEEEcccceEEEE-cCCCCCceEEE-EEEEeecCeeEE Confidence 99989999999999887554321 13445555544431 10011111111 122233221 Q ss_pred EEc-hhhEEEecC--C-----------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH Q lcl|Aclame:pro 267 EVH-ATRLHTIVS--R-----------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) Q Consensus 267 ~iH-~SRli~~~~--~-----------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~ 320 (695) .|| ..++..|.. . .+|-. .-.++-.|.|.++.+.+.+.+++.+....+.-+.. T Consensus 190 ~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv-~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~ 268 (474) T protein:vir:96 190 EYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFI-AFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDE 268 (474) T ss_pred EEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceE-EecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH Confidence 121 223332210 0 01111 11234568999999999999999999888888877 Q ss_pred hccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeE--EEecccCChHHHHHHHHHHHHhhhcCCce Q lcl|Aclame:pro 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQAQEQMSAVSHIPLI 398 (695) Q Consensus 321 ~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~--~~~~~lsgl~~~~~~~~~~iaaas~iP~t 398 (695) ++...+.+.+... ....+.... ++.+ +++.++ ++.+++ +.+.+.+++...++...+.|...+++|-. T Consensus 269 ~~~p~lv~~g~~~---~~~~~~~~~------~~~~-~~i~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~ 337 (474) T protein:vir:96 269 SVELIYILRGYEG---EDLSEFMEG------LKYY-KAINVS-SDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDF 337 (474) T ss_pred hhcchhhhcCCCc---ccccchhhh------hhcc-ceeecc-CCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCc Confidence 7766655433211 111111111 1111 233343 244444 45677789999999999999999999965 Q ss_pred eeeccCcccccCcchHHHHH-HHHHHH--HHHhhhhhHHHHHHHHHHHHHhcCCC-CCceeEEeccccccchhHHHHHHH Q lcl|Aclame:pro 399 KLLGITPTGLNASSEGEIRV-WYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRY 474 (695) Q Consensus 399 ~L~G~sp~Glnatge~D~~n-yyd~i~--~~Qe~~l~p~l~~l~~~l~~s~~g~~-~~d~~~~f~pL~~~se~e~Aei~~ 474 (695) -.-+ -+| |.||+ .++. |..... ..++..++..|++++.++..-..... ..++.+.|++-...+..+.+++.. T Consensus 338 ~~~~--~~~-n~Sg~-Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~~~~e~a~~~~ 413 (474) T protein:vir:96 338 QTDK--FGS-ATSGI-ALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMVNDLEQSQIGA 413 (474) T ss_pred cccc--ccc-ccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCccCHHHHHHHHH Confidence 4322 123 45666 3432 222222 34667789999999998765332222 246889999988888877776532 Q ss_pred HHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchh Q lcl|Aclame:pro 475 KQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPP 554 (695) Q Consensus 475 ~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (695) ..|.++...+...+....+. ..+........ ................ ........ T Consensus 414 ----------~~giiS~et~~~~lp~v~D~-------~~E~eri~~E~-~~~~~~~~~~~~~~~~-------~~~~~~~~ 468 (474) T protein:vir:96 414 ----------QSQYLSKETLVRHHPWVDDP-------KAELERLDEEQ-LELNKQLPNLDDGGAD-------GAQQQQQS 468 (474) T ss_pred ----------HcCCCChHHHHHhCCCCCCH-------HHHHHHHHHHH-HHHHhhccccccccCC-------CCCCcCCC Confidence 24777777665554321110 00000000000 0000000000000000 00000000 Q ss_pred hhhhhh Q lcl|Aclame:pro 555 TVANVN 560 (695) Q Consensus 555 ~~~~~~ 560 (695) ...... T Consensus 469 ~~~e~~ 474 (474) T protein:vir:96 469 ENNQSK 474 (474) T ss_pred CccccC Confidence 000000 No 160 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=98.18 E-value=3e-06 Score=50.88 Aligned_cols=446 Identities=8% Similarity=0.013 Sum_probs=187.9 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccccccccccc--ccccchhh------h-hhhc---cCCCCch Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALD--FNGTSMDA------L-SFVT---SSGFPGF 113 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~-~~~~---~~~f~gy 113 (695) |-.-+.+.+. +|+. |+.+....-.+... +....... + .+.. ..--.-| T Consensus 1 ~~~~~~~~~~-----------~~~~---------~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~ 60 (511) T protein:vir:99 1 MLKVNEFETD-----------TDLR---------GNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRL 60 (511) T ss_pred Cccccchhhh-----------hhhh---------hhhhhhhhhhhCCccccchhhhhhhccHHHHHHHHHHHHHhhHHHH Confidence 2222222111 1111 11111111001100 00000000 0 1100 0001124 Q ss_pred HHHHHHH--hChhhhhHhhcchHHHhh-----CCc-eeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHH Q lcl|Aclame:pro 114 PTLVLLA--QLPEYRAMHEVLADECIR-----TWG-EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRD 185 (695) Q Consensus 114 ~~~a~~~--~~~~~r~~v~~~a~d~tR-----~~~-~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~ 185 (695) +.+..|+ .|++..+....+.+.... +|- .|++....=.+..+.++. ..+.+..+.|...+++-++.. T Consensus 61 ~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-----~~d~~~~~~l~~~~~~n~~~~ 135 (511) T protein:vir:99 61 KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ-----DDDKDVLEAIEAFNDLNDVES 135 (511) T ss_pred HHHHHHhcccCccccccCcccccccCcceeecchHHHHHHHHHhhhcccCceee-----cCchHHHHHHHHHHhhcCHhH Confidence 4444454 355443322222211111 111 112111111122222222 234556677888888888999 Q ss_pred HHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc Q lcl|Aclame:pro 186 AVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG 265 (695) Q Consensus 186 ~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~ 265 (695) .+.++.+....||.+++++..+.++.. .+.+++|.++.|..-+. ....+-++ -.+|.+.. T Consensus 136 ~~~~~~~~~~i~G~a~~~vy~ded~~~------------------~i~~~~p~~~~~vyd~~-~~~~~~~~-vr~~~~~~ 195 (511) T protein:vir:99 136 HNRSLGLDLSIYGKAYELMIRNQDDET------------------RLYKSDAMSTFVIYDNT-IERNSIAG-VRYLRTKP 195 (511) T ss_pred HHHHHHHHHHhcCeeEEEEEeCCCCce------------------EEEEEccceeEEEEcCC-CCCceEEE-EEEEEeee Confidence 999999999999999999887544321 13344444444321110 00111111 01121110 Q ss_pred -----------eEE-chhhEEEecCC--------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHH Q lcl|Aclame:pro 266 -----------TEV-HATRLHTIVSR--------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQS 313 (695) Q Consensus 266 -----------~~i-H~SRli~~~~~--------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~ 313 (695) ..| .+.++.+|... .+|-. .-.++.+|.|.++.+.+.+.+++.+... T Consensus 196 ~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~nn~~g~sd~e~v~~liDa~d~~~S~ 274 (511) T protein:vir:99 196 IDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPIT-EFSNNERRKGDYEKVITLIDLYDNAESD 274 (511) T ss_pred cccCccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceE-EecCCCCCCCchhhhHHHHHHHHHHHHH Confidence 011 11222222110 01111 1123567999999999999999999999 Q ss_pred HHHHHHHhccceeeechHHhhcchHHHHHHH-HHHHHHH-hcCCceeEEEEcCCceeE--EEecccCChHHHHHHHHHHH Q lcl|Aclame:pro 314 VSDIVKQFSVSGILMDLAQALMPGANVDLSM-RAELINR-YRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQAQEQM 389 (695) Q Consensus 314 ~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~-r~~~~~~-~~~n~~~~~ld~~~e~~~--~~~~~lsgl~~~~~~~~~~i 389 (695) .+.-+..++...+.+.+......+......+ ++-.... ...+.+..-.+ ++-+++ +.+.+.++....++...+.| T Consensus 275 ~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~l~~~~~~~~~e~~~~~L~~~I 353 (511) T protein:vir:99 275 TANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETE-GSVDGGYIYKQYDVQGTEAYKDRLNSDI 353 (511) T ss_pred HHHHHHHhhchhhhhccCcccCchhhcccccccceecccccccccccccCC-CCcceeEEeecCCHHHHHHHHHHHHHHH Confidence 8888877766555543322111111111100 1110100 01111111111 233444 44556678999999999999 Q ss_pred HhhhcCCceeeeccCcccccCcchHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHH--hcCCC--C---CceeEEecc Q lcl|Aclame:pro 390 SAVSHIPLIKLLGITPTGLNASSEGEIRVWYDY--VRAYQRNALQQLMNDVIVMIQLS--LFGAV--D---PSIKWQWNA 460 (695) Q Consensus 390 aaas~iP~t~L~G~sp~Glnatge~D~~nyyd~--i~~~Qe~~l~p~l~~l~~~l~~s--~~g~~--~---~d~~~~f~p 460 (695) ...+.+|-.-.-+. +| |.||..=..-|... -...++..++..|++++.+++.- ..+.. + .++.+.|++ T Consensus 354 ~~~s~~P~~~~~~~--~g-n~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~~ 430 (511) T protein:vir:99 354 HMFTNTPNMKDDNF--SG-TQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTVRYVYNR 430 (511) T ss_pred HHHhCCcccccccc--cc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCC Confidence 99999998654222 22 45666322222222 22345677899999988887532 22221 2 257899999 Q ss_pred ccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccc Q lcl|Aclame:pro 461 LRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDT 540 (695) Q Consensus 461 L~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (695) -...+..+.+++..+. .|.++...+...+....+ ...+........... ............. T Consensus 431 ~~p~n~~e~~~~~~kl---------~GiiS~et~l~~l~~v~D-------~~~E~~ri~~E~~~~-~~~~~~~~~~~~~- 492 (511) T protein:vir:99 431 NLPKSLIEELKAYIDS---------GGKISQTTLMSLFSFFQD-------PELEVKKIEEDEKES-IKKAQKNMYQDPR- 492 (511) T ss_pred CCCcCHHHHHHHHHHH---------hccCCHHHHHHhCCCCCC-------HHHHHHHHHHHHHHH-HHHHhhcccccCC- Confidence 8888888887765443 256666665555422111 000000000000000 0000000000000 Q ss_pred ccccccCCCccchhhhhhhh Q lcl|Aclame:pro 541 GAPGGARAGATAPPTVANVN 560 (695) Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~ 560 (695) ................... T Consensus 493 -~~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 493 -NINDDEQDDSTKDSIDKKE 511 (511) T ss_pred -CCCCCCCCCCCcCcccccC Confidence 0000000000000000000 No 161 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=98.18 E-value=3.1e-06 Score=50.81 Aligned_cols=422 Identities=9% Similarity=-0.016 Sum_probs=179.7 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccccccccccccccc-chhhhhhhccCCCCchHHHHHHH---- Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGT-SMDALSFVTSSGFPGFPTLVLLA---- 120 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~gy~~~a~~~---- 120 (695) |--.. ++- ++...|+........+.. ....+.- -...++-+...-...|..+..|+ T Consensus 1 ~~~~~-~~~------------~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~ 61 (481) T protein:vir:10 1 MTVYT-INN------------INTKFSPLANDDFVVSDL------AELLKEENLRNFISRHQTEQVPRLEMLESYYLNRN 61 (481) T ss_pred CeeEe-eeh------------hchhcccccCceeeeecc------hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 11100 000 000000000000000000 0000000 00000000000000111222221 Q ss_pred ---------------------hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHH Q lcl|Aclame:pro 121 ---------------------QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIE 179 (695) Q Consensus 121 ---------------------~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~ 179 (695) .+.+.+.||+..+.=+.-+...++ ..+.+..+.|.+.++ T Consensus 62 ~~i~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~--------------------~~d~~~~~~l~~~~~ 121 (481) T protein:vir:10 62 TDILAGERRLQKYGDKADHRAVHNYAKYVSRFIVGYLTGNPITIT--------------------HQDNQTNDKIIELND 121 (481) T ss_pred cccccCccccccccccccceeecchHHHHHHHHHhhhccCCceEe--------------------cCChhHHHHHHHHHH Confidence 123334444444432222222221 124455667888899 Q ss_pred hhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCce Q lcl|Aclame:pro 180 RLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPS 259 (695) Q Consensus 180 ~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~ 259 (695) +-++...+.++.+.+-.||.+++++.++.++.. .+.+++|.++.|. ++......+.++ -. T Consensus 122 ~n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~------------------~i~~~~p~~~~~v-~d~~~~~~~~~~-i~ 181 (481) T protein:vir:10 122 LNDADEVNSDLALNLSIYGRAYEIVYRDFEDRD------------------TFKVLDPKSTFVV-YDQTLDKKVVAG-VR 181 (481) T ss_pred hcChhHHHHHHHHHHHhcCeEEEEEEeCCCCeE------------------EEEEEcccceEEE-EcCCCCCceEEE-EE Confidence 889999999999999999999998887554321 1344455554432 110000001100 00 Q ss_pred eEEEcc--------eEEc-hhhEEEecCC---------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH Q lcl|Aclame:pro 260 TWWMIG--------TEVH-ATRLHTIVSR---------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 315 (695) Q Consensus 260 ~y~i~~--------~~iH-~SRli~~~~~---------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~ 315 (695) +|.... ..++ ..++.+|... .+|-. .-.++-+|.|.++.+.+-+.+++++....+ T Consensus 182 ~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~~~~~~v~~lida~~~~~s~~~ 260 (481) T protein:vir:10 182 YFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPII-EYLNDQFKQGDFENVIALIDLYDSAQSDTA 260 (481) T ss_pred EEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEE-EeecCCCCCCchhhHHHHHHHHHHHHHHHH Confidence 111100 0111 1222222100 11111 112356799999999999999999988888 Q ss_pred HHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeE--EEecccCChHHHHHHHHHHHHhhh Q lcl|Aclame:pro 316 DIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQAQEQMSAVS 393 (695) Q Consensus 316 ~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~--~~~~~lsgl~~~~~~~~~~iaaas 393 (695) ..+..++...+.+.+......+....+.. -..+.... .. ....+.++.+++ +.+.+.+++...++...+.|...+ T Consensus 261 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s 337 (481) T protein:vir:10 261 NYMTDLNDAMLAIIGNVDLDSEDAKAFRD-ANMIHLEP-GT-NANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYT 337 (481) T ss_pred HHHHHhcCceeEeecCcCCCccchhhhhh-ccceeccc-cc-cccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHh Confidence 88887777777665432222211111111 00000000 00 000111223344 445566789999999999999999 Q ss_pred cCCceeeeccCcccccCcchHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHh--cCCCC---CceeEEeccccccch Q lcl|Aclame:pro 394 HIPLIKLLGITPTGLNASSEGEIRVWYDY--VRAYQRNALQQLMNDVIVMIQLSL--FGAVD---PSIKWQWNALRELDD 466 (695) Q Consensus 394 ~iP~t~L~G~sp~Glnatge~D~~nyyd~--i~~~Qe~~l~p~l~~l~~~l~~s~--~g~~~---~d~~~~f~pL~~~se 466 (695) ++|-. .+|. .+ -|.||+.=...|... -...++..++..+++++.+++.-. -+..+ .++++.|+|-...+. T Consensus 338 ~~p~~-~~~~-~~-~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~~~~~ 414 (481) T protein:vir:10 338 NTPDL-NDEQ-FS-GVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNYAELTITFTPNLPKSM 414 (481) T ss_pred CCccc-cccc-cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeEEeCCCCCcCH Confidence 99954 3342 22 245666322222222 122355678999999888776432 12112 268999999999899 Q ss_pred hHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccccccc Q lcl|Aclame:pro 467 LEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGA 546 (695) Q Consensus 467 ~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (695) .+.+++..+. .|.++...+...+....+. ..+....................+ T Consensus 415 ~~~a~~~~kl---------~g~is~et~~~~l~~i~d~-------~~E~~ri~~E~~~~~~~~~~~~~~----------- 467 (481) T protein:vir:10 415 MESINAFNAL---------SGGVSESTRLSLLDFIDNP-------KEELEKMQEEEAQREKQADKRGYG----------- 467 (481) T ss_pred HHHHHHHHHH---------hccCChHHHHHhCCCCCCH-------HHHHHHHHHHHHHHHhhhhhccCC----------- Confidence 8887765543 2556665555444321110 000000000000000000000000 Q ss_pred CCCccchhhhhhhhh Q lcl|Aclame:pro 547 RAGATAPPTVANVNA 561 (695) Q Consensus 547 ~~~~~~~~~~~~~~~ 561 (695) ....... ....-.+ T Consensus 468 ~~~~~~~-~~dd~~g 481 (481) T protein:vir:10 468 EAFENHL-NVDDSNG 481 (481) T ss_pred ccCCCCC-CCCCCCC Confidence 0000000 0000000 No 162 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=98.16 E-value=3.4e-06 Score=50.53 Aligned_cols=409 Identities=11% Similarity=0.002 Sum_probs=178.1 Q ss_pred cccccchhhhhhhcccccCCCCcccccccc-cccccccccchhhhhhhccCC--------CCchHHHHHHHhChhhhhHh Q lcl|Aclame:pro 59 PVAEPSPSLRLARQFEVDVSNYTPRERRAA-SYALDFNGTSMDALSFVTSSG--------FPGFPTLVLLAQLPEYRAMH 129 (695) Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------f~gy~~~a~~~~~~~~r~~v 129 (695) -...|+..... +. .-.. +....... ........+......+|.+.. ..+.+... + .+.+.+.|| T Consensus 1 ~~~~~~~~~~~---~~-~~~~-~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~k-i-~~n~~~~iv 73 (452) T protein:vir:36 1 MKYKPPKLMTF---SK-DEPI-TVEVVTKFMEKHKLEVARYEYLKNMYLGIMAIDDEPAKDSWKPDNR-L-AVNFTKYIV 73 (452) T ss_pred CcccCceeEEc---CC-ccCC-CHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCccccccCccce-e-ecchHHHHH Confidence 01111111000 00 0000 00000000 000000000000001111100 00000000 0 123445555 Q ss_pred hcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCC Q lcl|Aclame:pro 130 EVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGD 209 (695) Q Consensus 130 ~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d 209 (695) +..+.=++-+...+. ..+.+..+.|+..++.-++...+.++.+.+-.||.++.++.++.+ T Consensus 74 d~~~~~l~g~~~~~~--------------------~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~ 133 (452) T protein:vir:36 74 DTFTGYFNGIPVKKS--------------------HSDKEILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDED 133 (452) T ss_pred HHHhhhhcccCceee--------------------cCChhHHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCC Confidence 555544443333331 123445667888888888999999999999999999988887544 Q ss_pred CchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c---eEE-chhhEEEec------ Q lcl|Aclame:pro 210 DQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G---TEV-HATRLHTIV------ 277 (695) Q Consensus 210 ~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~---~~i-H~SRli~~~------ 277 (695) +.. .+.++++.++.|..-+. ....+-|+- .|+.. + ..| -..+++.+. T Consensus 134 g~~------------------~i~~~~p~~~~~v~d~~-~~~~~~~~i--~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~ 192 (452) T protein:vir:36 134 TQT------------------NVVYNSPENMFMVYDDT-VKQEPLFAV--RYGVDEDKKLQGEVYTLLETIKISGENDEI 192 (452) T ss_pred Cee------------------EEEEEcccceEEEEcCC-CCCceEEEE--EEEEecCceEEEEEEecCeEEEEEEcCCce Confidence 321 13334444443321100 000011100 00000 0 000 011111111 Q ss_pred ----CCc-----chhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHH Q lcl|Aclame:pro 278 ----SRP-----VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAEL 348 (695) Q Consensus 278 ----~~~-----~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~ 348 (695) +.+ +|-. ...++-.|.|.++.+.+.+.+++.+....+.-+..++...+.+.+... ..+ .+ .. T Consensus 193 ~~~~~~~~~~g~iPvv-~~~n~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~~g~~~-~~~---~~-~~--- 263 (452) T protein:vir:36 193 SFGEGTYNPYPDLPVV-EFYFNEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAV-EEE---DL-KN--- 263 (452) T ss_pred EEecceeccCCcccEE-EecCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCc-Cch---hh-hh--- Confidence 111 1111 112344699999999999999999999999888777777666544221 111 11 11 Q ss_pred HHHhcCCceeEEEEcCC----ceeEE--EecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHH- Q lcl|Aclame:pro 349 INRYRDNRNILFLDKAT----EEFFQ--FNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYD- 421 (695) Q Consensus 349 ~~~~~~n~~~~~ld~~~----e~~~~--~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd- 421 (695) .+.+ +++.+...+ .+++. .+.+.+++...++...+.|...+++|-. -++. .| |+||+.=...|.. T Consensus 264 ---~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~-~~~~--~g-n~Sg~Al~~~~~~l 335 (452) T protein:vir:36 264 ---IRSN-RVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANI-SDES--FG-SSSGVSLAYKLQAM 335 (452) T ss_pred ---hhhc-ceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCcccc-Cccc--cc-CCcHHHHHHHHHHH Confidence 1111 233333211 23444 4466788999999999999999999963 2332 23 5677742222322 Q ss_pred --HHHHHHhhhhhHHHHHHHHHHHHH--hcCCCC--CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhh Q lcl|Aclame:pro 422 --YVRAYQRNALQQLMNDVIVMIQLS--LFGAVD--PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVA 495 (695) Q Consensus 422 --~i~~~Qe~~l~p~l~~l~~~l~~s--~~g~~~--~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r 495 (695) .+.. .+..++..|++++.+++.- ..|... .++++.|++....+..+.+++..+. .|.++...+. T Consensus 336 ~~k~~~-~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~---------~g~iS~et~~ 405 (452) T protein:vir:36 336 SNLALS-FQRKFQSSLNSRYKLFCELSTNVSNKDSWKDIEYTFTRNEPKDIKEQAETANIL---------MGITSQETAL 405 (452) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHHHHHHHH---------hccCChHHHH Confidence 2222 4456788888888876542 223222 3688999999888888888766553 2556655554 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhh Q lcl|Aclame:pro 496 ARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANV 559 (695) Q Consensus 496 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (695) ..+....+ .. .......... .. .......... . .............. T Consensus 406 ~~~~~~~d------~~-~E~~ri~~E~-~~-~~~~~~~~~~--~------~~~~~~~~~~~~~e 452 (452) T protein:vir:36 406 SVISVIPD------VQ-AEMEKIKKEE-AS-TAIFDKDKQP--S------EKGTDTVVSETNEE 452 (452) T ss_pred HhCCCCCC------HH-HHHHHHHHHH-HH-HHHHHhhccC--C------CCcccccCccccCC Confidence 44321110 00 0000000000 00 0000000000 0 00000000000000 No 163 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=98.15 E-value=3.2e-06 Score=50.74 Aligned_cols=434 Identities=14% Similarity=0.074 Sum_probs=174.4 Q ss_pred hhhccccc--ccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHH------ Q lcl|Aclame:pro 46 MGRRGALN--ALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLV------ 117 (695) Q Consensus 46 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a------ 117 (695) |+=..+.. .++..+.-...++...-.. . +...- ...+..+-.....||.+ .+.-+.... T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d---~-----~~i~~----~~~~~~~i~~~~~~Y~g-~~~~l~~~~~~~~~~ 67 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIID---D-----PRINL----PADEVERIARDKRYYMD-DFKQVTHKNSYGDTQ 67 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhc---c-----cCCCC----CHHHHHHHHHHHHHhcC-CCccccccccCCCcc Confidence 21111100 0110000000000000000 0 00000 00000000000122222 111000000 Q ss_pred --HHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC Q lcl|Aclame:pro 118 --LLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ 195 (695) Q Consensus 118 --~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R 195 (695) .+....+.+.||+..|+=++-+-..|. -.++...+.|.+.+++-+++..+.+++..+- T Consensus 68 ~~~~~slnl~~~i~~~~A~ll~~e~~~i~--------------------~~d~~~~e~l~~i~~~n~f~~~~~~~~e~a~ 127 (505) T protein:vir:79 68 KHELQSVNVTKLASAKLASLIFNEQCQVT--------------------VSDETANDFLDDVFQQNDFYTTFEEKLEEWI 127 (505) T ss_pred ccceeecchHHHHHHHHHhhhcCCCceee--------------------cCChHHHHHHHHHHHhccHHHHHHHHHHHHh Confidence 001113444444444432222211111 1134556678888888889999999999998 Q ss_pred ccceEEEEEEEcCCCch--hccccCCccccccCcceEEEEEecchhccccceecccccccccC-Cce-------eEEEc- Q lcl|Aclame:pro 196 AFGRAHPYFKIKGDDQI--MDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFY-KPS-------TWWMI- 264 (695) Q Consensus 196 l~G~~~i~i~~~~d~~~--~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg-~P~-------~y~i~- 264 (695) .+||+++-+-++++... +-.|-..-|.....+.+..+..+.++... +.....|+ .-+ .|+|. T Consensus 128 a~G~~~~k~~~D~~~~~i~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~-------~~~~~~~yt~lE~h~~~~~~~~I~n 200 (505) T protein:vir:79 128 ALGSGCVRPYVDSGKIKLAWATADQVYPLQADTNQVNELAIASRTTEV-------ENHRTIYYTLLEFHQWDHGDYVITN 200 (505) T ss_pred hcCCeEEEEEEeCCceEEEEEcCCeeEEEEEcCCCeEEEEEEEEEEEe-------cCCcceEEEEEEEEEecCceEEEEE Confidence 89999988877643211 11111100111111222222222221110 00000011 111 12221 Q ss_pred -----------ceEEchhhE---------EEecCCc----------chhhhhcccCCCCchHHHHHHHHHHHHHHHhHHH Q lcl|Aclame:pro 265 -----------GTEVHATRL---------HTIVSRP----------VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSV 314 (695) Q Consensus 265 -----------~~~iH~SRl---------i~~~~~~----------~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~ 314 (695) |..|.-+.+ ..|.|.+ .|+.. .....+|+|++..+.+.+..++.+.... T Consensus 201 ~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~-~~~splG~S~~~~~~~~id~lD~~~s~~ 279 (505) T protein:vir:79 201 ELYRSEAAETVGINVPLNSLEQYEGLEPQVKITGLKHPLFAFYRNKGANNK-NFTSPMGMSLIDNSYTVIDAINRTHDQF 279 (505) T ss_pred EEEecCCCCccCcccchhhcccccccCcceeecCCCcceEEEecCCccccc-ccCCccCCchhhhhHHHHHHHHHHHHHH Confidence 111111111 1112211 12111 1123579999999999999999988877 Q ss_pred HHHHHHhccceeeec-hHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEeccc--CChHHHHHHHHHHHHh Q lcl|Aclame:pro 315 SDIVKQFSVSGILMD-LAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPL--SGLDALQAQAQEQMSA 391 (695) Q Consensus 315 ~~l~~~~~~~v~k~~-~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~l--sgl~~~~~~~~~~iaa 391 (695) ..-+......++--. ++......+.........++..-..-...+..|.++..++.++..+ ....+.++.++++++. T Consensus 280 ~~e~~~g~~~i~v~~~~l~~~~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~ 359 (505) T protein:vir:79 280 VDEVKKGQRRLIVPAEWLKTGSSYGGQASETHPPMFDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLREFEN 359 (505) T ss_pred HHHHHhcccceeechHHhcccCCCCcccccccccCCCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHH Confidence 775554444444322 3322211111000000011110000011122333455677877665 4567788888889999 Q ss_pred hhcCCceeeeccCcccccCcchH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-------------cCCCC-Cce Q lcl|Aclame:pro 392 VSHIPLIKLLGITPTGLNASSEG---EIRVWYDYVRAYQRNALQQLMNDVIVMIQLSL-------------FGAVD-PSI 454 (695) Q Consensus 392 as~iP~t~L~G~sp~Glnatge~---D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~-------------~g~~~-~d~ 454 (695) .+|++-..| |...+|. .|+.. ..+.-|.++..+|. .++..|+.++..++.-. .+.++ .++ T Consensus 360 ~~g~s~~~~-~~~~~~~-~TAtei~s~~~~l~~t~~~~~~-~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i 436 (505) T protein:vir:79 360 QTGLSQGTF-TTSPSGI-QTATEVVTNNSQTYQTRSSYIT-QVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDI 436 (505) T ss_pred HhCCChhhc-CCCcccc-chHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeE Confidence 999987765 5555565 34442 23446677777654 47888888887766321 12222 378 Q ss_pred eEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 455 KWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRL 534 (695) Q Consensus 455 ~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (695) +|.|++--..++.+.++.. ..++.+|+++...++...-. ........+....... ...........- T Consensus 437 ~v~f~d~i~~d~~~~~~~~-------~~~v~~Gi~s~e~~l~~~~~-----~~eeea~~el~ri~~E-~~~~~p~~~~~g 503 (505) T protein:vir:79 437 TINFNDGVFVDQESKRAAD-------LQAVQAQVMPKKQFLMRNYG-----LDEEEADEWLAQIDAE-NSTAEPEFNQFG 503 (505) T ss_pred EEEeCCCCCCCHHHHHHHH-------HHHHHcCCCCHHHHHHhcCC-----CChHHHHHHHHHHHHh-ccccCCCchhcc Confidence 8999998888876654433 33334455554433222111 0000000000000000 000000000000 Q ss_pred hh Q lcl|Aclame:pro 535 AE 536 (695) Q Consensus 535 ~~ 536 (695) +. T Consensus 504 g~ 505 (505) T protein:vir:79 504 GD 505 (505) T ss_pred CC Confidence 00 No 164 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=98.15 E-value=3.6e-06 Score=50.40 Aligned_cols=440 Identities=13% Similarity=0.063 Sum_probs=166.3 Q ss_pred ccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCC-------CCchHHHHHHHhChhhhhHhhcc Q lcl|Aclame:pro 60 VAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSG-------FPGFPTLVLLAQLPEYRAMHEVL 132 (695) Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------f~gy~~~a~~~~~~~~r~~v~~~ 132 (695) .+.|-+.++....+..-. . .-...+.. ..++......+|.+.. .....+.....-....++|||.. T Consensus 1 ~~~~~~~~~e~~~~~~~~-----~-~l~~~~~~-~~~r~~~l~~YY~G~~~i~~~~~~~~~~~~~~~~v~n~~~~iVd~~ 73 (486) T protein:vir:42 1 MTAPLPGMEEIEDPAVVR-----E-EMISAFED-ASKDLASNTSYYDAERRPEAIGVTVPREMQQLLAHVGYPRLYVDSV 73 (486) T ss_pred CCCCCCCCCCcccHHHHH-----H-HHHHHHHH-HHHHHHHHHHHhcccCcchhcccccchhHhhhhhccchHHHHHHHH Confidence 111111111000000000 0 00000000 0000000011111110 01111111111112245555554 Q ss_pred hHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCch Q lcl|Aclame:pro 133 ADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQI 212 (695) Q Consensus 133 a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~ 212 (695) ++-++= .||++. .+.+..+.+.+.|++-++.....++.+.+-.||.+++++..+.++.. T Consensus 74 ~~~l~~---------------~g~~~~------~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~ 132 (486) T protein:vir:42 74 AERQAV---------------EGFRLG------DADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFITISKPDPQLD 132 (486) T ss_pred Hhhhcc---------------cceecC------CCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccc Confidence 443322 233322 23333445677777777888888999988899999988876433211 Q ss_pred hccccCCccccccCcceEEEEEecchhccccceeccccccc----------ccCCcee---------EEE---cce---- Q lcl|Aclame:pro 213 MDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVAD----------DFYKPST---------WWM---IGT---- 266 (695) Q Consensus 213 ~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~----------~yg~P~~---------y~i---~~~---- 266 (695) + .+. .....+++++|.++.+. |+..+. .+ +.+.+.+ |++ .|. T Consensus 133 ~-~~~---------~~~~~i~~~~p~~~~~i-~d~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 200 (486) T protein:vir:42 133 L-GWD---------QNVPIIRVEPPTRMHAE-IDPRIN-RVSKAIRVAYDKEGNEIQAATLYTPMETIGWFRADGEWAEW 200 (486) T ss_pred c-ccC---------CCeeEEEEecccceEEE-EeCCCC-CeEEEEEEEEecCCCeEEEEEEEcCCcEEEEEecCCcEEee Confidence 0 000 01123455555554432 110000 00 1111111 111 111 Q ss_pred --EEchhhEEEecCCcchhhhhcccCCCCchHHHH-HHHHHHHHHHHhHHHHHHHHHhccceeeechH--HhhcchHHHH Q lcl|Aclame:pro 267 --EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQL-AMPYIDNWLRTRQSVSDIVKQFSVSGILMDLA--QALMPGANVD 341 (695) Q Consensus 267 --~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~-~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~--~~l~~~~~~~ 341 (695) .-|.--.+.++. .++. ......+|.|.++. +...+.+++++.........-++.....+.+. .......+.. T Consensus 201 ~~~~h~~g~vPvv~--~~n~-~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~~~~ 277 (486) T protein:vir:42 201 FNVPHGLGVVPVVP--LPNR-TRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDSETG 277 (486) T ss_pred cceecCCCCceEEE--eccc-cccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCccccccccccc Confidence 112211111100 0111 11223579999875 66777788877665544433333222211111 1111110000 Q ss_pred HHHHHHHHHHhcCCceeEEEEcCCceeEEEe-cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHH Q lcl|Aclame:pro 342 LSMRAELINRYRDNRNILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWY 420 (695) Q Consensus 342 l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyy 420 (695) ...++.. ...+.++.+++.+|.+++ +++....+.+.....++|+.+++|...|-|. +.. ++||+ .++.-+ T Consensus 278 ----~~~~~~~--~~~~~~~~~~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~-~~n-~~Sg~-Al~~~~ 348 (486) T protein:vir:42 278 ----QTLFDAY--LARILAFEDAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTA-ADN-PASAE-AIRAAE 348 (486) T ss_pred ----cchhhhh--hchhcccCCCCceEEeecccCHHHHHHHHHHHHHHHhcccCCCHHHhccc-cCc-hhHHH-HHHHHH Confidence 0111111 111233322333443332 2334455666666788999999998888443 222 25677 443333 Q ss_pred HHH---HHHHhhhhhHHHHHHHHHHHHHhcCC-CC---CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhh Q lcl|Aclame:pro 421 DYV---RAYQRNALQQLMNDVIVMIQLSLFGA-VD---PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQ 493 (695) Q Consensus 421 d~i---~~~Qe~~l~p~l~~l~~~l~~s~~g~-~~---~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e 493 (695) ..+ ...++..+++.|++++.++..-..+. .+ .++.+.|++....+..+.|+...+.+++. .|.++... T Consensus 349 ~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~-----~g~~s~et 423 (486) T protein:vir:42 349 SRLIKKVERKNLMFGGAWEEAMRIAYRIMKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNG-----QGVIPRER 423 (486) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcc-----cCCCCHHH Confidence 322 22345568899999998876544332 22 25788999999999888877665544321 24455555 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhcccccc Q lcl|Aclame:pro 494 VAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPRE 567 (695) Q Consensus 494 ~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (695) ++..+... ..... ................. .............. ......... .......... T Consensus 424 ~~~~lg~~------~d~~~-e~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~ 486 (486) T protein:vir:42 424 ARIDMGYS------VKERE-EMRRWDEEEAAMGLGLL-GTMVDADPTVPGSP-SPTAPPKPQ--PAIESSGGDA 486 (486) T ss_pred HHhcCCCC------hhHHH-HHHHHHHHHHHHHHHHH-HHhhcCCCCCCCCC-CCCCCCCCC--cccCCCCCCC Confidence 44333211 11111 00000000000000000 00000000000000 000000000 0000000000 No 165 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=98.12 E-value=4.2e-06 Score=50.06 Aligned_cols=426 Identities=8% Similarity=0.047 Sum_probs=178.2 Q ss_pred ccchhhhh--hhcccccCCCCcccccc-------cccccccccccch-hhh-hhhc--cCCCCchHHHHHHHh--Chhhh Q lcl|Aclame:pro 62 EPSPSLRL--ARQFEVDVSNYTPRERR-------AASYALDFNGTSM-DAL-SFVT--SSGFPGFPTLVLLAQ--LPEYR 126 (695) Q Consensus 62 ~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~-~~~~--~~~f~gy~~~a~~~~--~~~~r 126 (695) -.-..+-+ ++. .+. |+......+ ...+-.+.....- ..+ .+.. ..-..-|..+..|+. |.+.. T Consensus 1 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~I~~ 78 (492) T protein:vir:94 1 MQFIQLISQVAQA-LIK-GGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVK 78 (492) T ss_pred ChHHHHHHHHHHH-Hhc-CCceeecCccchhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc Confidence 00011111 111 111 111111111 0011111000000 000 0100 000111222223321 21111 Q ss_pred h---HhhcchHHHhh-------CCc-eeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcC Q lcl|Aclame:pro 127 A---MHEVLADECIR-------TWG-EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ 195 (695) Q Consensus 127 ~---~v~~~a~d~tR-------~~~-~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~R 195 (695) + .......+.+| +|. .|++....=.+.++.++. ..+.+..+.|...++ =++...+.++.+.+- T Consensus 79 ~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~-----~~d~~~~~~l~~~~~-n~~~~~~~~~~~~a~ 152 (492) T protein:vir:94 79 EPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK-----HTDDEVVKRIDEVLG-NRFDDKLHSVLTGAS 152 (492) T ss_pred ccccccccccccccccccccccchHHHHHHHHHhhhcccCceec-----cCchHHHHHHHHHHh-ccHHHHHHHHHHHHh Confidence 1 00011112222 221 112211111122222221 234455566665554 367888889999888 Q ss_pred ccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCcee----EEEcc---eEE Q lcl|Aclame:pro 196 AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPST----WWMIG---TEV 268 (695) Q Consensus 196 l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~----y~i~~---~~i 268 (695) .||.++.++..+.++.. .+.+++|.++.|. |+ |+ ..++|.+ |.+.. ..+ T Consensus 153 ~~G~a~~~v~~d~dg~~------------------~~~~~~p~~~~~v-~d--~~---~~~~~~a~ir~~~~~~~~~~~~ 208 (492) T protein:vir:94 153 NKGIEWLHPYLDEEGEF------------------KLFRVPAEQGIPI-WT--DK---EHEELEAFIRMYKLENETKVEY 208 (492) T ss_pred hCCeEEEEEEecCCCce------------------EEEEEcccceEEE-Ec--CC---CCCceEEEEEEEeeccceeEEE Confidence 99999999887554321 1334444444332 10 00 0111111 11100 000 Q ss_pred -chhhEEEec-------------------------CCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhc Q lcl|Aclame:pro 269 -HATRLHTIV-------------------------SRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS 322 (695) Q Consensus 269 -H~SRli~~~-------------------------~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~ 322 (695) ...++..|. -..+|-. .-.++-+|.|.++.+.+-+.+++.+....+..+..++ T Consensus 209 y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~nn~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~ 287 (492) T protein:vir:94 209 WDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFI-PFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSN 287 (492) T ss_pred EecCeEEEEEEecCeeeeccccccccccccccccCCCccceE-EecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 011111110 0111111 1123457999999999999999999988888888877 Q ss_pred cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCce--eEEEecccCChHHHHHHHHHHHHhhhcCCceee Q lcl|Aclame:pro 323 VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEE--FFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKL 400 (695) Q Consensus 323 ~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~--~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L 400 (695) ...+.+.+...- ...+..+.+. ..+++.++ ++.+ |-+.+.+.+++...++...+.|...+++|-.-. T Consensus 288 ~p~lv~~g~~~~---~~~~~~~~~~-------~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~ 356 (492) T protein:vir:94 288 ELTYVLKNYDDQ---ELPEFKRLLR-------YYGAIKVS-DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS 356 (492) T ss_pred CceeeeecCCcc---cchhhHHHHh-------hccceecC-CCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCcCCCc Confidence 777765543211 1111111111 11223333 2344 444567778999999999999999999996433 Q ss_pred eccCcccccCcchHHHHH-HHHH--HHHHHhhhhhHHHHHHHHHHHHHhcCCC--CCceeEEeccccccchhHHHHHHHH Q lcl|Aclame:pro 401 LGITPTGLNASSEGEIRV-WYDY--VRAYQRNALQQLMNDVIVMIQLSLFGAV--DPSIKWQWNALRELDDLEVAESRYK 475 (695) Q Consensus 401 ~G~sp~Glnatge~D~~n-yyd~--i~~~Qe~~l~p~l~~l~~~l~~s~~g~~--~~d~~~~f~pL~~~se~e~Aei~~~ 475 (695) + +-+| |.||+. ++. |... -...++..++..|++++.+++.- +|.. ..++.+.|++-...+..+.+++..+ T Consensus 357 -~-~~~~-n~Sg~A-l~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~-~~~~~~~~~i~v~f~~~~p~~~~e~~~~~~k 431 (492) T protein:vir:94 357 -D-KFGS-APSGVA-LEFLYTNLNLKADKLARKAKVAIQELLWFVFEH-FDIKGEHKDVDISFNYNKVANTELQVQTAQQ 431 (492) T ss_pred -c-cccc-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcccceeeEEecCCCCCCHHHHHHHHHH Confidence 1 2222 456663 432 2222 23346667899999998887643 3432 2468899999999888888766554 Q ss_pred HHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhh Q lcl|Aclame:pro 476 QAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPT 555 (695) Q Consensus 476 ~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (695) .+ |.++...+...+....+. .. +.......... .............-.. ...... .. T Consensus 432 l~---------giiS~et~~~~l~~v~d~------~~-E~eri~~E~~~--~~~~~~~~~~~~~~~~----~~~~~~-~~ 488 (492) T protein:vir:94 432 SM---------GIVSHETVLENHPFVEDL------QA-ELERIEQEQME--YNKQLPNLDDGGADSA----QQQERS-NN 488 (492) T ss_pred Hh---------ccCchHHHHHhCCCCCCH------HH-HHHHHHHHHHH--HHhhccccccccCCCC----ccccCC-cc Confidence 32 566666655444221110 00 00000000000 0000000000000000 000000 00 Q ss_pred hhhh Q lcl|Aclame:pro 556 VANV 559 (695) Q Consensus 556 ~~~~ 559 (695) .... T Consensus 489 ~e~e 492 (492) T protein:vir:94 489 KESE 492 (492) T ss_pred ccCC Confidence 0000 No 166 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=98.10 E-value=4.6e-06 Score=49.82 Aligned_cols=428 Identities=7% Similarity=0.003 Sum_probs=183.0 Q ss_pred Ccchhhhhhhhhchhccc---cccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRR---PEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDV 77 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (695) |.+|.. +.+. ...... .+.+-...+ ...-|..-....++-....+..... .+.. ..+.... T Consensus 21 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~-i~~~i~~~~~~~~r~~~l~~YY~g~----~~i~---------~~~~~~~ 84 (492) T protein:vir:97 21 LYPSQP-TQTE-IFDAIVRTNNKPETLEEM-IVRYIKQHLEKLPEISIGQEYYEQR----PDIV---------KEPKPVD 84 (492) T ss_pred eeccch-hhhh-HhhhcccCCCchhhHHHH-HHHHHHHHHHHHHHHHHHHHHhccc----Cccc---------ccccccc Confidence 443321 1110 000000 000000000 0000100000000000000000000 0000 0000000 Q ss_pred CCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCcc Q lcl|Aclame:pro 78 SNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLA 157 (695) Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~ 157 (695) ..+... ...+.++- .+.+.+.||+..+.=++-+.+.+. T Consensus 85 ~~~~~~---------~~~~~~ri--------------------~~n~~k~Ivd~~~~yl~g~p~~~~------------- 122 (492) T protein:vir:97 85 ATGAVD---------PLKPDDRM--------------------ITNFHANLVDQKVSYIVGKPIAFK------------- 122 (492) T ss_pred cccccc---------cccccccc--------------------ccchHHHHHHHHhhhhcccCceec------------- Confidence 000000 00001110 124556777777655554444432 Q ss_pred ccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecc Q lcl|Aclame:pro 158 AGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEP 237 (695) Q Consensus 158 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~ 237 (695) ..+.+..+.|...++. +....+.++.+.+-.||.++.++.++.++.. .+.+++| T Consensus 123 -------~~d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~------------------~~~~~~p 176 (492) T protein:vir:97 123 -------HTDDEVVKRIDEVLGN-RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF------------------KLFRVPA 176 (492) T ss_pred -------cCchHHHHHHHHHHhc-cHHHHHHHHHHHHhhcCeEEEEEEecCCCce------------------EEEEEcc Confidence 1234455556655543 6778888888888889999998887554421 1334444 Q ss_pred hhccccceecccccccccCCcee----EEEcc---eEE-chhhEEEec--C-----------------------Ccchhh Q lcl|Aclame:pro 238 YWVTPNNYNSINPVADDFYKPST----WWMIG---TEV-HATRLHTIV--S-----------------------RPVGDM 284 (695) Q Consensus 238 ~~i~p~~~~~~dp~s~~yg~P~~----y~i~~---~~i-H~SRli~~~--~-----------------------~~~p~~ 284 (695) .++.|..- |+ ..++|.+ |.... ..+ ...++..|. + ..+|-. T Consensus 177 ~~~~~i~d---~~---~~~~~~~~vr~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv 250 (492) T protein:vir:97 177 EQGIPIWT---DK---EHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFI 250 (492) T ss_pred cceEEEEc---CC---CCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceE Confidence 44433210 11 0111111 11110 000 111111110 0 011111 Q ss_pred hhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC Q lcl|Aclame:pro 285 LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA 364 (695) Q Consensus 285 ~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~ 364 (695) .-.++-.|.|.++.+.+-+.+++.+....+..+..++...+.+.+...-. ..+..+.+ +. .+++.++ + T Consensus 251 -~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~---~~~~~~~~------~~-~~~~~~~-~ 318 (492) T protein:vir:97 251 -PFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQE---LPEFKRLL------RY-YGAIKVS-D 318 (492) T ss_pred -EecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCccc---chhHHHHH------hh-ccceecC-C Confidence 11234579999999999999999998888888888777777665432111 11111111 11 1233333 2 Q ss_pred CceeEE--EecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHH-HHHHHH--HHHHhhhhhHHHHHHH Q lcl|Aclame:pro 365 TEEFFQ--FNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIR-VWYDYV--RAYQRNALQQLMNDVI 439 (695) Q Consensus 365 ~e~~~~--~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~-nyyd~i--~~~Qe~~l~p~l~~l~ 439 (695) +.+.+. .+.+.+++...++...+.|...+++|-.-+ + +-+| |.||+. ++ -|.... ....+..++..|++++ T Consensus 319 ~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~-~-~~~~-n~Sg~A-l~~~~~~l~~ka~~~~~~f~~~l~~~~ 394 (492) T protein:vir:97 319 NGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS-D-KFGS-APSGVA-LEFLYTNLNLKADKLARKAKVAIQELL 394 (492) T ss_pred CCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCCCCCc-c-cccc-CcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 444444 466778999999999999999999996443 1 1122 456664 43 333332 2446667899999999 Q ss_pred HHHHHHhcCCCC--CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 440 VMIQLSLFGAVD--PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPG 517 (695) Q Consensus 440 ~~l~~s~~g~~~--~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~ 517 (695) .+++.- .|..+ .++.+.|+|-...+.++.+++..+. .|.++...+...+....+. ..+.. . T Consensus 395 ~li~~~-~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl---------~G~iS~et~l~~l~~v~d~------~~Ele-r 457 (492) T protein:vir:97 395 WFVFEH-FDIKGEHKDVDISFNYNKVANTELQVQTAQQS---------MGIVSHETVLENHPFVEDL------QAELE-R 457 (492) T ss_pred HHHHHH-hcCCcccceeeEEecCCCCCCHHHHHHHHHHH---------hccCchHHHHHhCCCCCCH------HHHHH-H Confidence 887643 34322 4688999998888888887765553 2566666655444321110 00000 0 Q ss_pred hhhhhhhhhhhhhhhhh-hhhcccccccccCCCccch Q lcl|Aclame:pro 518 VPADDDIDGVLTYVQRL-AEGGDTGAPGGARAGATAP 553 (695) Q Consensus 518 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 553 (695) ....... ........ ................... T Consensus 458 i~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) T protein:vir:97 458 IEQEQTE--YNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) T ss_pred HHHHHHH--HHHhhhccccCCCCCCcccccccccccC Confidence 0000000 00000000 0000000000000000000 No 167 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=98.09 E-value=4.9e-06 Score=49.70 Aligned_cols=328 Identities=12% Similarity=0.028 Sum_probs=146.6 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhh-hhhccCCCCchHHHHHH-HhCh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGFPTLVLL-AQLP 123 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~gy~~~a~~-~~~~ 123 (695) |-++.+. ..... .+..+.+..+|.-++..+ . . .+++...-.... +||.. .+-...||.+ +.++ T Consensus 1 ~~~~~~~-~~~~~-~~~~~~~~~~f~~~~~~~-----~--~----~~~y~~~~~~~~~~~~ep--p~~~~~la~l~~~~~ 65 (345) T protein:vir:37 1 MKTNVKT-DNKKG-IVIAPINDRTFSLNEISA-----S--P----ALDYVGIGFDENYNCYLP--PVNRHALAKLPHQNA 65 (345) T ss_pred CCCCccc-cchhh-cccCcceeEEeecCCccc-----c--c----chhhhhhhhcCCccccCC--CCCHHHHHHHhhccc Confidence 2111110 00000 111111222222111000 0 1 112221111111 23322 1122334433 3344 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPY 203 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~ 203 (695) -...++..-....++ +++ | ..... + ..|..++...-+||.++++ T Consensus 66 ~h~~~i~~k~n~l~~-~~~----P---------------n~~lt------------~----~~f~~~~~d~ll~Gnay~~ 109 (345) T protein:vir:37 66 QHGGILHSRANMVSS-LYE----G---------------GKALS------------R----MDMRALCLNLIQFGDVGLL 109 (345) T ss_pred ccccceeeechHHHh-hcc----C---------------CCCCC------------H----HHHHHHHHHHHhcCCeEEE Confidence 433333222111111 110 0 00011 1 1122222222368988887 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--c--eEEchhhEEEecCC Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--G--TEVHATRLHTIVSR 279 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--~--~~iH~SRli~~~~~ 279 (695) +.-+. .|.+..|.++.+..+... .| ...|+....+.+. | ..+.+..||++.+. T Consensus 110 ~~rn~-----------------~G~~~~L~pl~~~~vr~~----~d--~~~~~~~~~~~~~~~g~~~~~~~~dVihir~~ 166 (345) T protein:vir:37 110 KVRNG-----------------FGQVVRLVPLSSLYLRVR----KD--GGYSYLMKKSLYDTAQEIYRYDAKDIIFIKLY 166 (345) T ss_pred EEEcC-----------------CCcEEEEEEEcCceeEEE----Ee--CCeeEEEEEeEecCCceEEEEccccEEEecCC Confidence 66432 244567777777766542 12 1234444444332 2 34667778888653 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHh-ccce-eeechHHhhcchHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQF-SVSG-ILMDLAQALMPGANVDLSMRAELINRYRDNRN 357 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~-~~~v-~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~ 357 (695) . +.....|.|-+..+...+.--+.+..-.......- .... +.+. ...++.+..+.+.+.++.. ...+|.+ T Consensus 167 ~------~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~-d~~l~~e~~~~lk~~~~~~-~g~~n~~ 238 (345) T protein:vir:37 167 D------PMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYST-DPDLTEEMEEEIARKISES-KGVGNFR 238 (345) T ss_pred C------CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEec-CCCCCHHHHHHHHHHHHHh-cCccccc Confidence 2 12345799999888887765555544444433322 2222 2322 1335555566677777653 3344555 Q ss_pred eEEE-Ec--CCceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCccccc--CcchHHHHHHHHHHHHHHh Q lcl|Aclame:pro 358 ILFL-DK--ATEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSEGEIRVWYDYVRAYQR 428 (695) Q Consensus 358 ~~~l-d~--~~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge~D~~nyyd~i~~~Qe 428 (695) .+++ .. .++.++....+.+. +-++.....++||++.+||-..| |..+++-. ++-|...+.|+ + T Consensus 239 ~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~ll-Gi~~~~~~~~~~~e~~~~~f~-------~ 310 (345) T protein:vir:37 239 SMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLS-GIIPTNTGGLGDPLKYREVYH-------Y 310 (345) T ss_pred ceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHh-CccCCCCCCcccHHHHHHHHH-------H Confidence 4444 21 12334443333332 33444466778999999998755 76554321 23343445554 3 Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccch Q lcl|Aclame:pro 429 NALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDD 466 (695) Q Consensus 429 ~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se 466 (695) +.|.|.++++-+.+-+ +.+++.+..+.|++.. ++. T Consensus 311 ~~l~P~~~~ie~~ln~--~~~~~~~~~i~F~~~~-L~~ 345 (345) T protein:vir:37 311 DEVMPLQEIIAETINQ--DPEIKNLLKIKFREQN-FAK 345 (345) T ss_pred HHHHHHHHHHHHHhhh--hccCCCcceEEecchh-hcC Confidence 4578888887776643 3456677788887532 222 No 168 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=98.06 E-value=5.6e-06 Score=49.39 Aligned_cols=329 Identities=12% Similarity=0.026 Sum_probs=141.9 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhh-hhhhccCCCCchHHHHH-HHhCh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDA-LSFVTSSGFPGFPTLVL-LAQLP 123 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~gy~~~a~-~~~~~ 123 (695) |.++.+ +......+..+.+...|.-+ .|-... ..++....... -+||.- .+ -...||. ++.|+ T Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~y~~~~~~~~~~~~ep-p~-~~~~la~~~~~~~ 65 (345) T protein:vir:37 1 MKTNVK--TDNKKGIVIAPINDRTFSLS-------EITASP----ALDYVGIGFDENYNCYLP-PV-NRHALAKLPHQNA 65 (345) T ss_pred CCcccc--ccchhhhcCCCceEEEeecC-------Ccccch----hhcccceeeecCCccccC-CC-CHHHHHHHhhcch Confidence 221111 00000000111111111111 111001 11111111110 123321 11 1122333 33343 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPY 203 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~ 203 (695) -...++..-....+. +.+ .+ .... +..|.+++..--+||-++++ T Consensus 66 ~h~~~i~~k~n~l~~-~~~--Pn-----------------~~~t----------------~~~f~~~v~d~ll~Gnay~~ 109 (345) T protein:vir:37 66 QHGGILHSRANMVSA-TYE--GG-----------------KALS----------------KMEMRALCLNLIQFGDVGLL 109 (345) T ss_pred hhcchhhhhhhHHhh-ccC--CC-----------------CCCC----------------HHHHHHHHHHHHhcCCeEEE Confidence 333333222111111 110 00 0011 11222233223368998888 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc--eEEchhhEEEecCCcc Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG--TEVHATRLHTIVSRPV 281 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~--~~iH~SRli~~~~~~~ 281 (695) +.-++ .|.+..|.++.+..+.... |.....+.....+...| ....++.||+|.... T Consensus 110 i~rn~-----------------~G~~~~L~pl~~~~vr~~~----d~~~~~~~~~~~~~~~g~~~~~~~~eViHir~~~- 167 (345) T protein:vir:37 110 KVRNG-----------------FGQVVRLVPLSSLYLRVHK----DGGYSYLMKKSLYDTAQEIYRYDAKDIIFIKLYD- 167 (345) T ss_pred EEECC-----------------CCCEEEEEEecCceeEEee----cCCeeEEEeeeeeccCceEEEEccccEEEEcCCC- Confidence 76532 2345567777766654321 11110111111111123 245678888887532 Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH-hccc-eeeechHHhhcchHHHHHHHHHHHHHHhcCCcee- Q lcl|Aclame:pro 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ-FSVS-GILMDLAQALMPGANVDLSMRAELINRYRDNRNI- 358 (695) Q Consensus 282 p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~-~~~~-v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~- 358 (695) +.....|.|-+......+.--..+.......... +... ++++.. ..++.+..+.+.+.++... ..+|.+. T Consensus 168 -----~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t~-~~l~~e~~~~lk~~~~~~~-g~~n~~~~ 240 (345) T protein:vir:37 168 -----PMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTD-PDLTEEMEEEIARKISESK-GVGNFRSM 240 (345) T ss_pred -----CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCCHHHHHHHHHHHHHhc-CccccCce Confidence 1234579998888777665444443333333322 2222 232221 2455556666777776543 3345444 Q ss_pred EEEEcC--CceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCcc---cccCcchHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 359 LFLDKA--TEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRAYQRN 429 (695) Q Consensus 359 ~~ld~~--~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp~---Glnatge~D~~nyyd~i~~~Qe~ 429 (695) +++..+ ++.++....+.+. +-++.....++||++.+||-..+ |..++ |+ ++-|...+.|+ +. T Consensus 241 ~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~li-Gi~~~~t~~~-s~~e~~~~~f~-------~~ 311 (345) T protein:vir:37 241 FVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLS-GIIPTNTGGL-GDPLKYREVYH-------YD 311 (345) T ss_pred eEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHh-ccccCCCCCc-ccHHHHHHHHH-------HH Confidence 444221 2334444444332 34445666778999999997655 76543 34 33344455555 34 Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccc Q lcl|Aclame:pro 430 ALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELD 465 (695) Q Consensus 430 ~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~s 465 (695) .|.|.++++-+.+-+ ..+++.+..+.|++-.-+- T Consensus 312 ~l~P~~~~ie~~ln~--~~e~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 312 EVMPLQEIIAETINQ--DPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHHHhhh--hhccCCcceEEECchhhcC Confidence 578877777766543 3456667888888643333 No 169 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=98.06 E-value=5.7e-06 Score=49.33 Aligned_cols=472 Identities=11% Similarity=0.039 Sum_probs=191.5 Q ss_pred ccccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCccccccccccccccccc Q lcl|Aclame:pro 18 RPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGT 97 (695) Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (695) -+-+.+|+++--.+--.. -|+. +.++..|....| .++-..+. ++. .+. T Consensus 1 ~~~~~~w~~~de~~~~~~---------~~~~------------------~~~~~~p~~~dG-~s~i~~~~--~~~--~~~ 48 (533) T protein:vir:58 1 MPSLEKYKKLNEAVNFTN---------FLSP------------------MYGMGAPHGAGG-SSMIPINM--YHP--FAT 48 (533) T ss_pred CCCcchhhhhhHHHHHHH---------hhch------------------hhcccCccCCCC-CccccCCC--Ccc--hhh Confidence 333344443321100000 0001 111111111111 11111000 000 001 Q ss_pred chhhhhhhccCCCCchHHHHHHH----hChhhhhHhhcchHHHhh--CCceeeccchhhhhccCccccccccccCCHHHH Q lcl|Aclame:pro 98 SMDALSFVTSSGFPGFPTLVLLA----QLPEYRAMHEVLADECIR--TWGEAIGGTKEKADTSGLAAGGNAASTSDGDQL 171 (695) Q Consensus 98 ~~~~~~~~~~~~f~gy~~~a~~~----~~~~~r~~v~~~a~d~tR--~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~ 171 (695) ......+|.+..+--+++...|+ +||++..+||.++.||+= +...+|...-+ ..+ .. T Consensus 49 ~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEVd~AideIvneaiv~d~~~~pV~v~l~-------------~~e----~s 111 (533) T protein:vir:58 49 AGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNENGNIVDVVTK-------------DIE----LA 111 (533) T ss_pred hhhhhhhhccccccHHHHHHHHHHhhccCcchhhHHHhhhceeeEecCCCceeEeecc-------------ccc----cc Confidence 11112233332233355555553 589999999999999752 33333321110 111 22 Q ss_pred HHHHHH-HHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccc Q lcl|Aclame:pro 172 KQINDE-IERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINP 250 (695) Q Consensus 172 ~~i~~~-~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp 250 (695) +.+... .+-|++...-.+.++.--.+|.-+--.+++ + .+++|+.|+.+||..+.....-..+ T Consensus 112 ~~iK~kI~~lldf~~~~~~~fR~WYVDGriy~Hkiik--~--------------~k~GI~elr~lDPr~i~~vr~~~t~- 174 (533) T protein:vir:58 112 KAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEK--G--------------SDGTIEKFQVVSPYIFSKRYNPETD- 174 (533) T ss_pred HHHHHHHHHHhcchhhhhHHHHhhhhcceeEEEeccC--C--------------cccchhhheecCCeeeEEEEeeccc- Confidence 222222 233455555555555444555554433332 1 1245677888888877653221111 Q ss_pred cccccCCceeEEE-----------cceEEchhhEEEecCCcchhhhhcccCCCCchHHHHH---HHHHHHHHHHhHHHHH Q lcl|Aclame:pro 251 VADDFYKPSTWWM-----------IGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLA---MPYIDNWLRTRQSVSD 316 (695) Q Consensus 251 ~s~~yg~P~~y~i-----------~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~---~~~l~~~~~~~~~~~~ 316 (695) . ++|.+ .+.+|+.+.|+.+...-+ ......+.|.|.++ ++.|+-.+ .|- T Consensus 175 --~-----eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~-----d~~~~~iisyLhkAiKp~NQLkmiE-----DAl 237 (533) T protein:vir:58 175 --T-----WYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKID-----TNFFPYGRSYLESARAIWNQLRLME-----DAL 237 (533) T ss_pred --e-----EEEeecccccccccCccccccchhheeeeeeccc-----cCCCCceehhhhHHHHHHHHHHHHH-----HHH Confidence 1 22222 136899999987776532 23345678999888 55554433 245 Q ss_pred HHHHhccc----eeeechHHhhc---chHHHHHHHHHHHHHHhcCCceeEEEEc--------------------CCceeE Q lcl|Aclame:pro 317 IVKQFSVS----GILMDLAQALM---PGANVDLSMRAELINRYRDNRNILFLDK--------------------ATEEFF 369 (695) Q Consensus 317 l~~~~~~~----v~k~~~~~~l~---~~~~~~l~~r~~~~~~~~~n~~~~~ld~--------------------~~e~~~ 369 (695) ++++.+-. |+-+|..+.-. ..-...++.++..--.+.++.|-+.-|. -.-+++ T Consensus 238 VIYRisRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTEI~ 317 (533) T protein:vir:58 238 MLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEID 317 (533) T ss_pred HHHhhcCChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCccceee Confidence 67766543 66555333211 1111223222222111222222221111 012344 Q ss_pred EEe-cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh Q lcl|Aclame:pro 370 QFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEG--EIRVWYDYVRAYQRNALQQLMNDVIVMIQLSL 446 (695) Q Consensus 370 ~~~-~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~--D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~ 446 (695) ++. .+|+.+ +=+.-|...+=-+.++|+++|-. .+|++.++|= |.-.|...|.++|.. +...+++ ++++ + T Consensus 318 TLpGg~lgem-eDV~YF~kkLy~ALnVP~sRl~~--e~~fgr~~eItRDEiKF~KFI~rLR~r-F~~ll~~--qLil--k 389 (533) T protein:vir:58 318 ILQGSKVDLA-EDVEYMLNRLISALKVPKAFIGY--EGDVNAKNTLATQDIKFNNTIKRIQGF-FVEELER--MVRM--N 389 (533) T ss_pred ecCCCCCCcH-HHHHHHHHHHHHHhCCCeeecCC--CCCCccchhhhHHHHHHHHHHHHHHHH-HHHHHhc--cccc--c Confidence 553 234444 44567888899999999999944 4578888874 555699999999876 4555554 2222 2 Q ss_pred cCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--- Q lcl|Aclame:pro 447 FGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDD--- 523 (695) Q Consensus 447 ~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~--- 523 (695) .--.+++|.|.|+-=...++-..+++......+.+.+.. .+..+-+++.+............ ....+.....+. T Consensus 390 ~iit~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dp--yvgk~yi~k~ILr~tdei~~q~e-~ie~E~~~~~~~~~~ 466 (533) T protein:vir:58 390 KEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKG--WVREDWIYSNILQIPYDLKPQEE-VAEAAGGGGLFDTGG 466 (533) T ss_pred cCcchhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHhcCChhhhHHHH-HHHHhhcCCCCCCCC Confidence 223467899999988888887777777766655544321 22222222222211110000000 000000000000 Q ss_pred ---hhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcCCe--EEEEEeCCCc- Q lcl|Aclame:pro 524 ---IDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGK--VLLMKRPAGD- 597 (695) Q Consensus 524 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--vLL~~r~~g~- 597 (695) ...........+..... ..... .......+.. ...+ -.+.+|. -..-.-+.|. T Consensus 467 ~~~e~~~~~~~~~~~~p~~~------~~~~~------------~~~~~~~~~~-~~~~--~~~~~~a~~~~~~~~g~~~~ 525 (533) T protein:vir:58 467 FGEETTPADFLGERGSPIES------PRGRT------------EFDFGTEGGE-ELGG--ELNLGGAFEEFEEETGGGEE 525 (533) T ss_pred cccccCCcccCccccCcccC------CCChh------------hHhcccCCcc-cccc--cccccccchhhhhhcCCccc Confidence 00000000000000000 00000 0000000000 0000 0000000 0000000000 Q ss_pred -eeCCcce Q lcl|Aclame:pro 598 -WGLPAGK 604 (695) Q Consensus 598 -W~lPGG~ 604 (695) -.+|.-. T Consensus 526 ~~~~p~~~ 533 (533) T protein:vir:58 526 ELPFPEEE 533 (533) T ss_pred CCCCCCCC Confidence 0011000 No 170 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=98.02 E-value=7e-06 Score=48.85 Aligned_cols=329 Identities=8% Similarity=-0.041 Sum_probs=139.6 Q ss_pred cCCCCcccchhhcccccccccccccccchhhhhhh-cccccCCCCcccccccccccccccccchhhh-hhhccCCCCchH Q lcl|Aclame:pro 37 TAAQPVPADMGRRGALNALDAAPVAEPSPSLRLAR-QFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSGFPGFP 114 (695) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~gy~ 114 (695) |+ ..... ..+.....+.++-+|. .|+ |-...... .++...-+++. +||.. . +-.. T Consensus 1 ~~---------~~~~~---~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~--~~~~~~~~~~~~~~~ep-p-~~~~ 57 (348) T protein:vir:26 1 MT---------EQLIH---SHTTDGTESKSVYSFDPNPE-------PVDTNSWM--TRYCELFYNDFDDYWEP-P-ISLK 57 (348) T ss_pred CC---------ccccc---hhhccccCCceEEEecCCCe-------eecCcchH--HHHHHHHhcCCCccccC-C-CCHH Confidence 11 11110 0000001111121211 111 11101100 11111111111 23221 1 1122 Q ss_pred HHH-HHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh Q lcl|Aclame:pro 115 TLV-LLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH 193 (695) Q Consensus 115 ~~a-~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~ 193 (695) .|| +++.++-...++..-.....+ ++ ... .... +..|.+++.. T Consensus 58 ~La~l~~~n~~h~~~i~~k~N~l~~-~~--~Pn-----------------~~~t----------------~~~f~~~~~d 101 (348) T protein:vir:26 58 GLAEIANANGYHGSLLKARANYVAG-RF--MNG-----------------GGLP----------------MYKMNSACWD 101 (348) T ss_pred HHHHHHhhhhhhhhhHhhhhhHHhh-cc--cCC-----------------CCCC----------------HHHHHHHHHH Confidence 333 334455444444333222222 11 000 0011 1112222222 Q ss_pred cCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc--eEEchh Q lcl|Aclame:pro 194 DQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG--TEVHAT 271 (695) Q Consensus 194 ~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~--~~iH~S 271 (695) --+||-+++++.-+. .|.+..|.++.+..+.+. .| .+|+ ++...| +.+.+. T Consensus 102 ~ll~Gnay~~~~rn~-----------------~G~~~~L~~l~~~~v~~~----~d---~~~~---~~~~~g~~~~f~~~ 154 (348) T protein:vir:26 102 YFGLGMSAFVKIRSY-----------------LKNVIALEPLPMVHMRKR----KN---GDFV---QLLRNNEQKVFKAK 154 (348) T ss_pred HHhcCCeEEEEEEcC-----------------CCcEEEEEEecCceeEee----ec---CcEE---EEEecCeEEEEcCc Confidence 235798888875432 234556777777666542 12 1221 122233 467889 Q ss_pred hEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH-hccce-eeechHHhhcchHHHHHHHHHHHH Q lcl|Aclame:pro 272 RLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ-FSVSG-ILMDLAQALMPGANVDLSMRAELI 349 (695) Q Consensus 272 Rli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~-~~~~v-~k~~~~~~l~~~~~~~l~~r~~~~ 349 (695) .||+|.+..+ .....|.|-+......+.--..+.......... ++... +.+.. ..++.+..+.+.+.++.. T Consensus 155 dIiHir~~~~------~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~-~~ls~e~~~~lk~~~~~~ 227 (348) T protein:vir:26 155 DVIFIPQYDP------QQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATD-PNLSEADEKALKEKIASS 227 (348) T ss_pred cEEEEcCCCC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC-CCCCHHHHHHHHHHHHHh Confidence 9999876321 234579999888877765444433333332222 22222 22221 235555566676666653 Q ss_pred HHhcCCceeEEEE---cCCceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCc---ccccCcchHHHHHH Q lcl|Aclame:pro 350 NRYRDNRNILFLD---KATEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITP---TGLNASSEGEIRVW 419 (695) Q Consensus 350 ~~~~~n~~~~~ld---~~~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp---~Glnatge~D~~ny 419 (695) ...+|.+.+++- +.++.++....+.+. +-++.....+.||++.+||-.+ +|..+ +|+ ++-|.-.+.| T Consensus 228 -~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~l-lGi~~~~~~~~-sn~e~~~~~f 304 (348) T protein:vir:26 228 -KGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGM-GGMLPQQGANV-PDPLKVSQVY 304 (348) T ss_pred -cCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHH-ccccCCCCCcc-ccHHHHHHHH Confidence 333454444432 112334444444333 3344455566799999999865 47643 334 3344455666 Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEe--ccccccchhHHHHH Q lcl|Aclame:pro 420 YDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQW--NALRELDDLEVAES 472 (695) Q Consensus 420 yd~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f--~pL~~~se~e~Aei 472 (695) +. +.|.|.++++-+.|-. .+ .+++++.|.| +|.. ...+.+.+ T Consensus 305 ~~-------~~l~P~~~~ie~~ln~-~l-~~~~~~~~~fdl~~~~--e~~~~~a~ 348 (348) T protein:vir:26 305 DF-------YEVIPVCKRFMDAVNN-DP-EIPDNLKLKFNLNPGV--ESANGSAV 348 (348) T ss_pred HH-------HHHHHHHHHHHHHHhh-hh-CCCCccEEEEecCccc--ccchhhcC Confidence 53 3478888877665432 22 2455555554 4422 22222222 No 171 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=98.01 E-value=7.3e-06 Score=48.74 Aligned_cols=474 Identities=11% Similarity=0.013 Sum_probs=195.9 Q ss_pred HHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCC Q lcl|Aclame:pro 31 ATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGF 110 (695) Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 110 (695) =-|...+.++..|..-.+|-+ ++ ... ..+.+... . ......... .+.+.. +.... .- T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~--ar---------~~~---~~y~aa~~----~-r~~~~~~~~-~s~~~~-i~~~~--~~ 57 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLA--AR---------EAI---QAYEAARP----G-RTHKAKRQP-LGADTS-LQKSA--VS 57 (548) T ss_pred CchHHhHhhhcchHHHHHHHH--hH---------HHh---ccccccCc----c-ccccccCCC-CChHHH-HHHHH--HH Confidence 112222233332221111110 00 000 11111100 0 000011110 011110 11000 00 Q ss_pred CchHHHHHHHhChhhhhHhhcchHHHhh-CCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhh-------- Q lcl|Aclame:pro 111 PGFPTLVLLAQLPEYRAMHEVLADECIR-TWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL-------- 181 (695) Q Consensus 111 ~gy~~~a~~~~~~~~r~~v~~~a~d~tR-~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l-------- 181 (695) +-=....+++.|++++.+|+......+= .++.|...+- + .+.+.+.+..++|+++|++. T Consensus 58 lr~RaRdL~rNn~~a~~av~~~~~nvVG~~G~~i~p~~l------~------~d~~~a~~l~~~ie~~w~~Wa~~~D~~g 125 (548) T protein:vir:95 58 MREQCRKLDEDHDLVTGLLDRLEERVVGGSGIGVEPLPL------R------LDGSVHAELAMEIRSAWAEWSLSPETSG 125 (548) T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccCccccceeeeec------C------CCHHHHHHHHHHHHHHHHHhhcCccccc Confidence 0001234556788888888877766653 2343332210 0 00111223334555555432 Q ss_pred --chHHHHHHHHHhcCccceEEEEEEEcCCCc-hhccccCCccccccCcceEEEEEecchhccccceeccc------ccc Q lcl|Aclame:pro 182 --RIRDAVRTTVIHDQAFGRAHPYFKIKGDDQ-IMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSIN------PVA 252 (695) Q Consensus 182 --~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~-~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~d------p~s 252 (695) .+-+....+++..-..|-+++.+....+.. ....|+. + .|.++++..|.-. .+..+ ..- T Consensus 126 ~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~~~g~~~~----------~-~lqliepd~l~~~-~~~~~~~i~~GIE~ 193 (548) T protein:vir:95 126 ELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNYTFATSVP----------F-ALELLEPDYLPFS-YNNLSKGIVQGIER 193 (548) T ss_pred cCCHHHHHHHHHHHHHhCCceEEEeeecccccccCCcccc----------e-EEEEechhhcCCC-CCCCCCceeeeeEE Confidence 233444445554334566665554432211 0011111 1 2556666666311 11000 011 Q ss_pred cccCCceeEEEcc---------------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHH--H Q lcl|Aclame:pro 253 DDFYKPSTWWMIG---------------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSV--S 315 (695) Q Consensus 253 ~~yg~P~~y~i~~---------------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~--~ 315 (695) -.+|+|..|+|.. +.|-.++|+|+-...-| .+.-|+|.+-+++..|.+++.-..+- + T Consensus 194 D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~~r~------gQ~RGvs~lapvl~~l~~l~~y~dael~~ 267 (548) T protein:vir:95 194 DTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYRKRI------GQNRGVPMLHAVLIRLADLKDYEESERVA 267 (548) T ss_pred CCCCceEEEEEeecCCCcccccccccceeeechhHheecccccCC------ccccCcchHHHHHHHHHHHhHHHHHHHHH Confidence 2579999998842 35777887765543322 34569999999999998887766533 2 Q ss_pred HHHHHhccceeeechHHhhcchHHH-HHHHHHHHHHHhcCCceeEE--EEcCCceeEEEecc--cCChHHHHHHHHHHHH Q lcl|Aclame:pro 316 DIVKQFSVSGILMDLAQALMPGANV-DLSMRAELINRYRDNRNILF--LDKATEEFFQFNTP--LSGLDALQAQAQEQMS 390 (695) Q Consensus 316 ~l~~~~~~~v~k~~~~~~l~~~~~~-~l~~r~~~~~~~~~n~~~~~--ld~~~e~~~~~~~~--lsgl~~~~~~~~~~ia 390 (695) ..+...-..++|.+........... .-.... .-.-|+++ | ..+|+++.++.+ -++..+....+...|| T Consensus 268 aki~A~~a~fi~~~~~~~~~~~~~~~~~~~~~------~~~pG~iv~~L-~pGe~i~~~~p~~p~~~~~~f~~~~lr~IA 340 (548) T protein:vir:95 268 ARISAALAMYIKKGNPDSYTVEPGKDRKNRTI------PIAPGMVFDDL-EPGEDVGMIESNRPNPFLEGFRNGQLRMIG 340 (548) T ss_pred HHHhhhheeeeecCCCccccCCCCcccccccc------cccCCcccccc-CCCceeeecCCCCCCCCHHHHHHHHHHHHH Confidence 2344444455565433222111110 000001 11235532 4 357889998865 4689999999999999 Q ss_pred hhhcCCceeeeccCccccc-CcchHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhcCCC--CC------ceeEE Q lcl|Aclame:pro 391 AVSHIPLIKLLGITPTGLN-ASSEGEIRVWYDYVRAYQRNALQ----QLMNDVIVMIQLSLFGAV--DP------SIKWQ 457 (695) Q Consensus 391 aas~iP~t~L~G~sp~Gln-atge~D~~nyyd~i~~~Qe~~l~----p~l~~l~~~l~~s~~g~~--~~------d~~~~ 457 (695) +..|||.-.|.|.. ++ | ||.-..+..+...++.+|...+. |+.+.+++..+++ |.+ |. -+... T Consensus 341 aglGipYe~ltgD~-s~-nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~l~--G~i~lP~~~~~~~~~~~~ 416 (548) T protein:vir:95 341 AGTRSTYSSVSRAY-DG-TYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQMYLLA--RKERLPADVDHRTLYAAV 416 (548) T ss_pred hhcCCCHHHHhccc-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcCCCCCCCchhheeee Confidence 99999999999975 44 3 44555677788888888886544 4444444444433 333 22 24455 Q ss_pred eccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--hhhh----hhhhh Q lcl|Aclame:pro 458 WNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADD--DIDG----VLTYV 531 (695) Q Consensus 458 f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~ 531 (695) |-+.--..-.. .|.+++....+.+|..+..++......+..................... .+.. ..... T Consensus 417 W~~P~~~~iDP-----~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~~~~GL~~~~~~~~~~~~~~~~ 491 (548) T protein:vir:95 417 YQGPVMPWINP-----MHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKANRAAGLVFSSDAYHQLVKSGMD 491 (548) T ss_pred eecCCccccCh-----HHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccC Confidence 54332221111 2345566666677777666555443333222222111110000000000 0000 00000 Q ss_pred hhhhhh--------------cccccccccCCCccchhhhhhhhhcccc-ccccccCc Q lcl|Aclame:pro 532 QRLAEG--------------GDTGAPGGARAGATAPPTVANVNANVKP-REAGAQDA 573 (695) Q Consensus 532 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 573 (695) ...... .......+.................... .....+.+ T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (548) T protein:vir:95 492 PVEAVQKVYLGVGKMLTADEARELVNRYGAGLPVPGPDFPNESNNGGADGQPSNPDP 548 (548) T ss_pred CCCchhhhccccccccccchhHHhhccCCCCCcCCCCCCCcccccCCCCCCCCCCCC Confidence 000000 0000000000000000000000000000 00000111 No 172 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=97.94 E-value=9.9e-06 Score=48.01 Aligned_cols=447 Identities=9% Similarity=0.029 Sum_probs=184.2 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccccccccccc--cccc------chhhh-hhhc---cCCCCch Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALD--FNGT------SMDAL-SFVT---SSGFPGF 113 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~-~~~~---~~~f~gy 113 (695) |-.-+.|.... +.- ++.+....-.+... +.+. +...+ .+.. ..--.-| T Consensus 1 ~~~~~~~~~~~-----------~~~---------~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~ 60 (511) T protein:vir:96 1 MLKVNEFETDT-----------DLR---------GNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRL 60 (511) T ss_pred Cccccchhhhh-----------hhh---------hhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHH Confidence 22222222110 000 01010000000000 0000 00000 1100 0001124 Q ss_pred HHHHHHH--hChhhhhHhhcchHHH-----hhCCce-eeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHH Q lcl|Aclame:pro 114 PTLVLLA--QLPEYRAMHEVLADEC-----IRTWGE-AIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRD 185 (695) Q Consensus 114 ~~~a~~~--~~~~~r~~v~~~a~d~-----tR~~~~-i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~ 185 (695) +.+..|+ .|++..+......+.. ..+|-+ |++....=.+.++.++. ..+.+..+.|...+++-++.. T Consensus 61 ~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-----~~d~~~~~~l~~~~~~n~~~~ 135 (511) T protein:vir:96 61 KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ-----DDDKDVLEAIEAFNDLNDVES 135 (511) T ss_pred HHHHHHhhccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceee-----cCchHHHHHHHHHHhhcChhH Confidence 4444454 3544332221111111 011211 12111111122222221 234556677888888888999 Q ss_pred HHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc Q lcl|Aclame:pro 186 AVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG 265 (695) Q Consensus 186 ~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~ 265 (695) ...++.+....||.++.++.++.++.. .+.+++|.++.|..-+.. ...+-++- .+|.+.. T Consensus 136 ~~~~~~~~~~~~G~a~~~vy~d~dg~~------------------~i~~~~p~~~~~v~dd~~-~~~~~~~v-r~~~~~~ 195 (511) T protein:vir:96 136 HNRSLGLDLSIYGKAYELMIRNQDDET------------------RLYKSDAMSTFIIYDNTV-ERNSIAGV-RYLRTKP 195 (511) T ss_pred HHHHHHHHHHhcCeeEEEEEeCCCCce------------------EEEEEcccceEEEEcCCC-CCceEEEE-EEEEeee Confidence 999999999999999999887655421 123334444333211000 00011100 1111100 Q ss_pred -----------eEE-chhhEEEecCC--------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHH Q lcl|Aclame:pro 266 -----------TEV-HATRLHTIVSR--------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQS 313 (695) Q Consensus 266 -----------~~i-H~SRli~~~~~--------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~ 313 (695) ..| ...++..|... .+|-. .-.++.+|.|.++.+.+.+.+++.+... T Consensus 196 ~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~gd~e~v~~liDa~~~~~S~ 274 (511) T protein:vir:96 196 IDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPIT-EFSNNERRKGDYEKVITLIDLYDNAESD 274 (511) T ss_pred ccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceE-EecCCCCCCCchhhhHHHHHHHHHHHHH Confidence 001 12222222110 01110 1123457999999999999999999888 Q ss_pred HHHHHHHhccceeeechHHhhcchHHHHH-HHHHHHHHHhc--CCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHH Q lcl|Aclame:pro 314 VSDIVKQFSVSGILMDLAQALMPGANVDL-SMRAELINRYR--DNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMS 390 (695) Q Consensus 314 ~~~l~~~~~~~v~k~~~~~~l~~~~~~~l-~~r~~~~~~~~--~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~ia 390 (695) .+.-+..++...+.+.+......+..... ..++-...... +..+.-.-++.+-+|-+.+.+.+++...++...+.|. T Consensus 275 ~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~ 354 (511) T protein:vir:96 275 TANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIH 354 (511) T ss_pred HHHHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHH Confidence 88877766665555443222111111110 00110000000 0001111111223344456677899999999999999 Q ss_pred hhhcCCceeeeccCcccccCcchHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHH--hcCCC--C---CceeEEeccc Q lcl|Aclame:pro 391 AVSHIPLIKLLGITPTGLNASSEGEIRVWYDYV--RAYQRNALQQLMNDVIVMIQLS--LFGAV--D---PSIKWQWNAL 461 (695) Q Consensus 391 aas~iP~t~L~G~sp~Glnatge~D~~nyyd~i--~~~Qe~~l~p~l~~l~~~l~~s--~~g~~--~---~d~~~~f~pL 461 (695) ..+++|-.-.-+. +| |.||+.=..-|.... ...++..++..|++++.+++.- ..+.. + .++++.|++- T Consensus 355 ~~s~~P~~~~~~~--~~-n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~ 431 (511) T protein:vir:96 355 MFTNTPNMKDDNF--SG-TQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HHhCCcccccccc--cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCC Confidence 9999997643221 22 456663222232222 2335667888999988876532 12221 2 2578999998 Q ss_pred cccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccc Q lcl|Aclame:pro 462 RELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTG 541 (695) Q Consensus 462 ~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (695) ...+..+.++...+. .|.++...+...+....+ .. .+........................... T Consensus 432 ~p~n~~e~~d~~~kl---------~G~iS~et~l~~l~~v~d------~~-~El~ri~~E~~~~~~~~~~~~~~~~~~~~ 495 (511) T protein:vir:96 432 LPKSLIEELKAYIDS---------GGKISQTTLMSLFSFFQD------PE-LEVKKIEEDEKESIKKAQKGIYKDPRDIN 495 (511) T ss_pred CCcCHHHHHHHHHHH---------hccCChHHHHHhCCCCCC------HH-HHHHHHHHHHHHHHHHHhhccccCCCCCC Confidence 888888887654443 255666555444322110 00 00000000000000000000000000000 Q ss_pred cccccCCCccchhhhhhhh Q lcl|Aclame:pro 542 APGGARAGATAPPTVANVN 560 (695) Q Consensus 542 ~~~~~~~~~~~~~~~~~~~ 560 (695) ................ T Consensus 496 ---~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:96 496 ---DDEQDDDTKDTVDKKE 511 (511) T ss_pred ---CCCCCCCccCcccccC Confidence 0000000000000000 No 173 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=97.94 E-value=9.9e-06 Score=48.01 Aligned_cols=447 Identities=9% Similarity=0.029 Sum_probs=184.2 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccccccccccc--cccc------chhhh-hhhc---cCCCCch Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALD--FNGT------SMDAL-SFVT---SSGFPGF 113 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~-~~~~---~~~f~gy 113 (695) |-.-+.|.... +.- ++.+....-.+... +.+. +...+ .+.. ..--.-| T Consensus 1 ~~~~~~~~~~~-----------~~~---------~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~ 60 (511) T protein:vir:78 1 MLKVNEFETDT-----------DLR---------GNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRL 60 (511) T ss_pred Cccccchhhhh-----------hhh---------hhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHH Confidence 22222222110 000 01010000000000 0000 00000 1100 0001124 Q ss_pred HHHHHHH--hChhhhhHhhcchHHH-----hhCCce-eeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHH Q lcl|Aclame:pro 114 PTLVLLA--QLPEYRAMHEVLADEC-----IRTWGE-AIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRD 185 (695) Q Consensus 114 ~~~a~~~--~~~~~r~~v~~~a~d~-----tR~~~~-i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~ 185 (695) +.+..|+ .|++..+......+.. ..+|-+ |++....=.+.++.++. ..+.+..+.|...+++-++.. T Consensus 61 ~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-----~~d~~~~~~l~~~~~~n~~~~ 135 (511) T protein:vir:78 61 KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ-----DDDKDVLEAIEAFNDLNDVES 135 (511) T ss_pred HHHHHHhhccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceee-----cCchHHHHHHHHHHhhcChhH Confidence 4444454 3544332221111111 011211 12111111122222221 234556677888888888999 Q ss_pred HHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc Q lcl|Aclame:pro 186 AVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG 265 (695) Q Consensus 186 ~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~ 265 (695) ...++.+....||.++.++.++.++.. .+.+++|.++.|..-+.. ...+-++- .+|.+.. T Consensus 136 ~~~~~~~~~~~~G~a~~~vy~d~dg~~------------------~i~~~~p~~~~~v~dd~~-~~~~~~~v-r~~~~~~ 195 (511) T protein:vir:78 136 HNRSLGLDLSIYGKAYELMIRNQDDET------------------RLYKSDAMSTFIIYDNTV-ERNSIAGV-RYLRTKP 195 (511) T ss_pred HHHHHHHHHHhcCeeEEEEEeCCCCce------------------EEEEEcccceEEEEcCCC-CCceEEEE-EEEEeee Confidence 999999999999999999887655421 123334444333211000 00011100 1111100 Q ss_pred -----------eEE-chhhEEEecCC--------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHH Q lcl|Aclame:pro 266 -----------TEV-HATRLHTIVSR--------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQS 313 (695) Q Consensus 266 -----------~~i-H~SRli~~~~~--------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~ 313 (695) ..| ...++..|... .+|-. .-.++.+|.|.++.+.+.+.+++.+... T Consensus 196 ~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~gd~e~v~~liDa~~~~~S~ 274 (511) T protein:vir:78 196 IDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPIT-EFSNNERRKGDYEKVITLIDLYDNAESD 274 (511) T ss_pred ccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceE-EecCCCCCCCchhhhHHHHHHHHHHHHH Confidence 001 12222222110 01110 1123457999999999999999999888 Q ss_pred HHHHHHHhccceeeechHHhhcchHHHHH-HHHHHHHHHhc--CCceeEEEEcCCceeEEEecccCChHHHHHHHHHHHH Q lcl|Aclame:pro 314 VSDIVKQFSVSGILMDLAQALMPGANVDL-SMRAELINRYR--DNRNILFLDKATEEFFQFNTPLSGLDALQAQAQEQMS 390 (695) Q Consensus 314 ~~~l~~~~~~~v~k~~~~~~l~~~~~~~l-~~r~~~~~~~~--~n~~~~~ld~~~e~~~~~~~~lsgl~~~~~~~~~~ia 390 (695) .+.-+..++...+.+.+......+..... ..++-...... +..+.-.-++.+-+|-+.+.+.+++...++...+.|. T Consensus 275 ~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~ 354 (511) T protein:vir:78 275 TANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIH 354 (511) T ss_pred HHHHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHH Confidence 88877766665555443222111111110 00110000000 0001111111223344456677899999999999999 Q ss_pred hhhcCCceeeeccCcccccCcchHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHH--hcCCC--C---CceeEEeccc Q lcl|Aclame:pro 391 AVSHIPLIKLLGITPTGLNASSEGEIRVWYDYV--RAYQRNALQQLMNDVIVMIQLS--LFGAV--D---PSIKWQWNAL 461 (695) Q Consensus 391 aas~iP~t~L~G~sp~Glnatge~D~~nyyd~i--~~~Qe~~l~p~l~~l~~~l~~s--~~g~~--~---~d~~~~f~pL 461 (695) ..+++|-.-.-+. +| |.||+.=..-|.... ...++..++..|++++.+++.- ..+.. + .++++.|++- T Consensus 355 ~~s~~P~~~~~~~--~~-n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~ 431 (511) T protein:vir:78 355 MFTNTPNMKDDNF--SG-TQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HHhCCcccccccc--cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCC Confidence 9999997643221 22 456663222232222 2335667888999988876532 12221 2 2578999998 Q ss_pred cccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccc Q lcl|Aclame:pro 462 RELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTG 541 (695) Q Consensus 462 ~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (695) ...+..+.++...+. .|.++...+...+....+ .. .+........................... T Consensus 432 ~p~n~~e~~d~~~kl---------~G~iS~et~l~~l~~v~d------~~-~El~ri~~E~~~~~~~~~~~~~~~~~~~~ 495 (511) T protein:vir:78 432 LPKSLIEELKAYIDS---------GGKISQTTLMSLFSFFQD------PE-LEVKKIEEDEKESIKKAQKGIYKDPRDIN 495 (511) T ss_pred CCcCHHHHHHHHHHH---------hccCChHHHHHhCCCCCC------HH-HHHHHHHHHHHHHHHHHhhccccCCCCCC Confidence 888888887654443 255666555444322110 00 00000000000000000000000000000 Q ss_pred cccccCCCccchhhhhhhh Q lcl|Aclame:pro 542 APGGARAGATAPPTVANVN 560 (695) Q Consensus 542 ~~~~~~~~~~~~~~~~~~~ 560 (695) ................ T Consensus 496 ---~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:78 496 ---DDEQDDDTKDTVDKKE 511 (511) T ss_pred ---CCCCCCCccCcccccC Confidence 0000000000000000 No 174 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=97.93 E-value=1e-05 Score=47.94 Aligned_cols=375 Identities=11% Similarity=0.037 Sum_probs=153.3 Q ss_pred ccccccchhhh----hhhccCCCCchHHHHHHH----------------------hChhhhhHhhcchHHHhhCCceeec Q lcl|Aclame:pro 92 LDFNGTSMDAL----SFVTSSGFPGFPTLVLLA----------------------QLPEYRAMHEVLADECIRTWGEAIG 145 (695) Q Consensus 92 ~~~~~~~~~~~----~~~~~~~f~gy~~~a~~~----------------------~~~~~r~~v~~~a~d~tR~~~~i~~ 145 (695) ++ ......+ ..+. ..-.-|..+..|+ -+...++|||..++=+.= T Consensus 1 ~~--~~~~~~i~~l~~~~~-~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~------- 70 (441) T protein:vir:80 1 MN--SDELALIEGMYDRIQ-RLSSWHCCIEGYYEGSNRVRDLGVAIPPELQRVQTVVSWPGIAVDALEERLDW------- 70 (441) T ss_pred CC--ccHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCcchhcCcccchhhhhhhhhcchHHHHHHHHHhhhcc------- Confidence 00 0000000 0000 0001122222222 123344555544432221 Q ss_pred cchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 146 GTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 146 ~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) .||+. + +. +.+...++.-++...+.++.+.+-.||.|+.++..+.++... T Consensus 71 --------~g~~~------~-d~---~~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~------------ 120 (441) T protein:vir:80 71 --------LGWTN------G-DG---YGLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTVS------------ 120 (441) T ss_pred --------ccccC------C-Ch---HHHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceE------------ Confidence 12321 1 22 235566777788889999999888999999888776554322 Q ss_pred CcceEEEEEecchhccccc-------------eeccccc---ccccCCceeEEE--c--ceEEchhhEEE-ecCCcc--- Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNN-------------YNSINPV---ADDFYKPSTWWM--I--GTEVHATRLHT-IVSRPV--- 281 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~-------------~~~~dp~---s~~yg~P~~y~i--~--~~~iH~SRli~-~~~~~~--- 281 (695) +.+++|.++.+.. +...+.. ..-|..-..|++ . +..+.-.+.-+ |..-|+ T Consensus 121 ------i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 194 (441) T protein:vir:80 121 ------VRPQSPKNCTGKFSADGSRLDAGLVVQQTCDPEVVEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPI 194 (441) T ss_pred ------EEEEccceEEEEEeCCCCceeEEEEEEEEecCceEEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEe Confidence 2223333322210 0000000 000111111111 0 00000000000 111111 Q ss_pred hhhhhcccCCCCchHHH-HHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEE Q lcl|Aclame:pro 282 GDMLKPTYSFAGISMTQ-LAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILF 360 (695) Q Consensus 282 p~~~~~~~~~~G~S~l~-~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ 360 (695) ++. ......+|.|.+. .+.+.+.+++++.......+..++...+.+.+.. +........... -.++.. T Consensus 195 ~n~-~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~G~~-~~~~~~~~~~~~---------~~~i~~ 263 (441) T protein:vir:80 195 VNR-RRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFYAYPQRWVTGVS-ADEFSQPGWVLS---------MASVWA 263 (441) T ss_pred ecc-ccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCceeeeecCC-ccccccchhhhc---------cccccc Confidence 011 1123457999775 4677777788877766665555555444433221 111111110000 112333 Q ss_pred EEcC--CceeEEEecccCChHH---HHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHH---HHHHHhhhhh Q lcl|Aclame:pro 361 LDKA--TEEFFQFNTPLSGLDA---LQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDY---VRAYQRNALQ 432 (695) Q Consensus 361 ld~~--~e~~~~~~~~lsgl~~---~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~---i~~~Qe~~l~ 432 (695) ++++ .+..+..+.+-++++. .+......+++.++||...| |.++.. ++||+. ++.-+.. ....++..+. T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~-g~~~~~-~~Sg~A-l~~~~~~l~~k~~~~~~~f~ 340 (441) T protein:vir:80 264 VDKDDDGDTPNVGSFPVNSPTPYSDQMRLLAQLTAGEAAVPERYF-GFITSN-PPSGEA-LAAEESRLVKRAERRQTSFG 340 (441) T ss_pred CCCCCCCCcceeEecCccchHHHHHHHHHHHHHHhcccCCCHHHh-ccCCCc-chHHHH-HHHHHHHHHHHHHHHHHHHH Confidence 3321 1223333333344444 45555789999999998666 544332 256763 3322222 2233566688 Q ss_pred HHHHHHHHHHHHHhc--CCCC---CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchh--hhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLSLF--GAVD---PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRP--DQVAARLNTEPDGP 505 (695) Q Consensus 433 p~l~~l~~~l~~s~~--g~~~---~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~--~e~r~~L~~~~~~~ 505 (695) +.|.+++.+++.-.. +..+ .++.+.|++....+..+.++...+..+ .|.+.. ..+...+. T Consensus 341 ~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~e~ad~~~kl~~-------~g~~~~s~~~~~~~l~------ 407 (441) T protein:vir:80 341 QGWLSVGFLAAKALDSRVDEADFFGDVGLRWRDASTPTRAATADAVTKLVG-------AGILPADSRTVLEMLG------ 407 (441) T ss_pred HHHHHHHHHHHHHhcCCCcccccceeeeEEeCCCCCcCHHHHHHHHHHHHh-------cCcccccHHHHHHhCC------ Confidence 999998887764432 2222 257899999998888888765554433 333211 11111111 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccc Q lcl|Aclame:pro 506 YAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTG 541 (695) Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (695) +... ................... ........... T Consensus 408 ~~~~-e~~~~~~e~~e~~~~~~~~-~~~~~~~~~~~ 441 (441) T protein:vir:80 408 LDDV-QVEAVMRHRAESSDPLAVL-AGAISRQTNEV 441 (441) T ss_pred CCHH-HHHHHHHHHHHHHHHHHHH-hhhhhcccccC Confidence 1000 0000000000000000000 00000000000 No 175 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=97.91 E-value=1.1e-05 Score=47.70 Aligned_cols=326 Identities=13% Similarity=0.083 Sum_probs=143.8 Q ss_pred hhhccccccccc-ccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHH-HHHhCh Q lcl|Aclame:pro 46 MGRRGALNALDA-APVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLV-LLAQLP 123 (695) Q Consensus 46 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a-~~~~~~ 123 (695) |++|.+..+... +..+++++.+-.| .. |...|-...... .++...-.++ +|| .. .+....|+ +++.++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~p~~v~~~~~~--~~~~~~~~~~-~~~-~p-p~~~~~la~~~~a~~ 70 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAF---TF--GEPVPVLDRRDI--LDYVECISNG-RWY-EP-PVSFTGLAKSLRAAV 70 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEE---Ec--CCceeecCcchh--hhHHHhhhcC-ccc-cC-CCCHHHHHHHHhhhh Confidence 777665322110 0011111111111 11 111111111111 0111000010 222 21 12233343 334444 Q ss_pred hhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEE Q lcl|Aclame:pro 124 EYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPY 203 (695) Q Consensus 124 ~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~ 203 (695) -...++-.-....+. +++ .. .-... ..|..++..--+||-+++. T Consensus 71 ~h~s~i~~k~n~l~~-~~~--Pn-----------------p~~t~----------------~~f~~~~~d~ll~Gnay~~ 114 (344) T protein:vir:56 71 HHSSPIYVKRNILAS-TFI--PH-----------------PWLSQ----------------QDFSRFVLDFLVFGNAFLE 114 (344) T ss_pred hhCccceehhhhHHh-hcC--CC-----------------CCCCH----------------HHHHHHHHHHHhcCCeEEE Confidence 444444332222221 110 00 00111 1121111112357988887 Q ss_pred EEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc----eEEchhhEEEecCC Q lcl|Aclame:pro 204 FKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG----TEVHATRLHTIVSR 279 (695) Q Consensus 204 i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~----~~iH~SRli~~~~~ 279 (695) +.-+. .|.+.+|.++.+..+.... |. + .+|++.+ ..+.+..||++.+. T Consensus 115 ~~rn~-----------------~G~~~~L~pl~~~~v~~~~----~~---~----~~~~~~~~g~~~~~~~~dIiHir~~ 166 (344) T protein:vir:56 115 KRYST-----------------TGKVIRLETSPAKYTRRGV----EE---D----VYWWVPSFNEPTAFAPGSVFHLLEP 166 (344) T ss_pred EEECC-----------------CCcEEEEEEeCCceeEEee----cC---C----EEEEEecCCeEEEEcCccEEEECCC Confidence 65422 2345667777776665421 11 1 1344432 35677889988763 Q ss_pred cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH-hccce-eeechHHhhcchHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 280 PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ-FSVSG-ILMDLAQALMPGANVDLSMRAELINRYRDNRN 357 (695) Q Consensus 280 ~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~-~~~~v-~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~ 357 (695) .+ .....|.|-+..+.+.+.--..+..-....... ++... +.+.. ..++.+..+.+.+.++.. ...+|.. T Consensus 167 ~~------~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d-~~ls~e~~~~lk~~~~~~-~g~~~~r 238 (344) T protein:vir:56 167 DI------NQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD-AVQDRNDIEMLRENMVKS-KGRNNFK 238 (344) T ss_pred CC------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC-CCCCHHHHHHHHHHHHHh-cCCCCcc Confidence 22 234579999988888777555555444444433 22332 23321 235656666677777653 2456666 Q ss_pred eEEEEcC---CceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCcc---cccCcchHHHHHHHHHHHHHH Q lcl|Aclame:pro 358 ILFLDKA---TEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRAYQ 427 (695) Q Consensus 358 ~~~ld~~---~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp~---Glnatge~D~~nyyd~i~~~Q 427 (695) .+++... ++.++....+.+. +-++-....+.||++.+||-.+| |..+. |+ ++-|...++|+ T Consensus 239 ~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~ll-Gi~~~~t~~~-~n~eq~~~~f~------- 309 (344) T protein:vir:56 239 NLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLM-GGKPENVGSL-GDIEKVAKVFV------- 309 (344) T ss_pred ceEEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHh-ccCCCCCCcc-ccHHHHHHHHH------- Confidence 6666421 2334444333332 34566666778999999999755 76543 33 23343445554 Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhH Q lcl|Aclame:pro 428 RNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLE 468 (695) Q Consensus 428 e~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e 468 (695) ++.|.|.++++-++.- .+| +-.+.|++..-..+.- T Consensus 310 ~~tL~Pl~~~ie~~n~--~l~----~~~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 310 RNELIPLQDRIREING--WIG----QEVIRFKNYSLDTDNG 344 (344) T ss_pred HHHHHHHHHHHHHHHh--hhc----cccccCCCccccccCC Confidence 3446777666644221 112 1124455544222211 No 176 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=97.87 E-value=1.4e-05 Score=47.23 Aligned_cols=444 Identities=9% Similarity=0.027 Sum_probs=187.8 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccc----ccccccccccc----chhhh-hhhc---cCCCCch Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERR----AASYALDFNGT----SMDAL-SFVT---SSGFPGF 113 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~-~~~~---~~~f~gy 113 (695) |-.-+.|.+.. +.- |..+... ...|.+...-. +...+ .+.. .---.-| T Consensus 1 ~~~~~~~~~~~-----------~~~---------~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~ 60 (511) T protein:vir:93 1 MLKVNEFETDT-----------DLR---------GNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRL 60 (511) T ss_pred Cccccchhhhh-----------hhh---------hhhhhhhhhhhCCcccccchhhhhhccHHHHHHHHHHHHHhhHHHH Confidence 22222222110 000 1111100 00111100000 00000 1100 0001124 Q ss_pred HHHHHHH--hChhhhhHhhcchHHHh-----hCCc-eeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHH Q lcl|Aclame:pro 114 PTLVLLA--QLPEYRAMHEVLADECI-----RTWG-EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRD 185 (695) Q Consensus 114 ~~~a~~~--~~~~~r~~v~~~a~d~t-----R~~~-~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~ 185 (695) ..+..|+ .|++..+-...+.+... -+|- .|++....=.+.++.++. ..+.+..+.|.+.+++-++.. T Consensus 61 ~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-----~~d~~~~~~l~~~~~~n~~~~ 135 (511) T protein:vir:93 61 KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ-----DDDKDVLEVIEAFNDLNDVES 135 (511) T ss_pred HHHHHHhcccCccccccCcCcccccCcceeecchHHHHHHHHhhhhcccCeeec-----cCChHHHHHHHHHHhhcCHhH Confidence 4444454 35543332222211111 1121 122211111222232222 234556677888888888999 Q ss_pred HHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee--------------ccccc Q lcl|Aclame:pro 186 AVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN--------------SINPV 251 (695) Q Consensus 186 ~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~--------------~~dp~ 251 (695) .+.++.+..-.||.++.++..+.++.. .+.+++|.++.|..-+ ..+.. T Consensus 136 ~~~~~~~~~~~~G~ay~~vy~de~~~~------------------~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~ 197 (511) T protein:vir:93 136 HNRSLGLDLSIYGKAYELMIRNQDDET------------------RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPID 197 (511) T ss_pred HHHHHHHHHHhcCeeEEEEEeCCCCce------------------EEEEEccceeEEEEcCCCCCceEEEEEEEEeeecc Confidence 999999999999999999887654421 1333444444332110 00000 Q ss_pred ccccCCceeEEEcceEEchhhEEEecCC--------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 252 ADDFYKPSTWWMIGTEVHATRLHTIVSR--------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTR 311 (695) Q Consensus 252 s~~yg~P~~y~i~~~~iH~SRli~~~~~--------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~ 311 (695) ..+.+...++.| +.+.++.+|... .+|-. .-.++.+|.|.++.+.+.+.+++.+. T Consensus 198 ~~~~~~~~~~~i----yt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv-~~~nn~~g~gd~e~v~~liDa~d~~~ 272 (511) T protein:vir:93 198 KTDEDEVFTVDL----FTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPIT-EFSNNERRKGDYEKVITLIDLYDNAE 272 (511) T ss_pred ccccceEEEEEE----EeCCcEEEEEecCCCccccccccccccccCCCccceE-EecCCCCCCCchhhHHHHHHHHHHHH Confidence 001111111111 112222222111 01110 11235679999999999999999999 Q ss_pred HHHHHHHHHhccceeeechHHhhcchHHHHHH-HHHHHHH-HhcCCceeEEEE-cCCceeEEEecccCChHHHHHHHHHH Q lcl|Aclame:pro 312 QSVSDIVKQFSVSGILMDLAQALMPGANVDLS-MRAELIN-RYRDNRNILFLD-KATEEFFQFNTPLSGLDALQAQAQEQ 388 (695) Q Consensus 312 ~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~-~r~~~~~-~~~~n~~~~~ld-~~~e~~~~~~~~lsgl~~~~~~~~~~ 388 (695) ...+..+..++...+.+.+......+...... .++-... ....+....-.+ +.+-.|-+.+.+.+++...++...+. T Consensus 273 S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~ 352 (511) T protein:vir:93 273 SDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 352 (511) T ss_pred HHHHHHHHHhhCcceeeecCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHH Confidence 99888888777766655432221111110000 0100000 000000011111 12223444556778999999999999 Q ss_pred HHhhhcCCceeeeccCcccccCcchHHHH-HHHHH--HHHHHhhhhhHHHHHHHHHHHHH--hcCCC--C---CceeEEe Q lcl|Aclame:pro 389 MSAVSHIPLIKLLGITPTGLNASSEGEIR-VWYDY--VRAYQRNALQQLMNDVIVMIQLS--LFGAV--D---PSIKWQW 458 (695) Q Consensus 389 iaaas~iP~t~L~G~sp~Glnatge~D~~-nyyd~--i~~~Qe~~l~p~l~~l~~~l~~s--~~g~~--~---~d~~~~f 458 (695) |...+.+|-.-.-+. +| |.||+. ++ -|... -...++..++..|++++.+++.- .-+.. + .++++.| T Consensus 353 I~~~s~~P~~~~~~~--~~-n~Sg~A-l~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f 428 (511) T protein:vir:93 353 IHMFTNTPNMKDDNF--SG-TQSGEA-MKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVY 428 (511) T ss_pred HHHHhCCcccccccc--cc-cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEe Confidence 999999997644221 22 456663 33 22221 22336677899999998887632 22222 2 2578999 Q ss_pred ccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhc Q lcl|Aclame:pro 459 NALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGG 538 (695) Q Consensus 459 ~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (695) ++....+..+.+++..+. .|.++...+...+....+. ........................... T Consensus 429 ~~~~p~n~~e~~~~~~kl---------~g~iS~et~~~~l~~v~d~-------~~E~~ri~~E~~~~~~~~~~~~~~~~~ 492 (511) T protein:vir:93 429 NRNLPKSLIEELKAYIDS---------GGKISQTTLMSLFSFFQDP-------ELEVKKIEEDEKESIKKAQKGIYKDPR 492 (511) T ss_pred CCCCCCCHHHHHHHHHHH---------hccCchHHHHHhCCCCCCH-------HHHHHHHHHHHHHHHHHHhhhcccCCC Confidence 998888888887755443 3566666555444221110 001100000000000000000000000 Q ss_pred ccccccccCCCccchhhhhhhh Q lcl|Aclame:pro 539 DTGAPGGARAGATAPPTVANVN 560 (695) Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~ 560 (695) ... ................ T Consensus 493 ~~~---~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:93 493 DIN---DDEQDDDTKDTVDKKE 511 (511) T ss_pred CCC---CCCCCCcccccccccC Confidence 000 0000000000000000 No 177 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=97.86 E-value=1.4e-05 Score=47.20 Aligned_cols=446 Identities=8% Similarity=0.004 Sum_probs=187.8 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccc----cccccccccc----cchhhh-hhhc---cCCCCch Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERR----AASYALDFNG----TSMDAL-SFVT---SSGFPGF 113 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~-~~~~---~~~f~gy 113 (695) |-.-+.|.+.. +.- |..+... ...|-+...- .+...+ .+.. .---.-| T Consensus 1 ~~~~~~~~~~~-----------~~~---------~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~ 60 (511) T protein:vir:96 1 MLKVNEFETDT-----------DLR---------GNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRL 60 (511) T ss_pred Cccccchhhhh-----------hhh---------hhhhhhhhhhhCCccccchhhhhhhccHHHHHHHHHHHHHhhHHHH Confidence 22222222110 000 1101100 0011110000 000000 0100 0001124 Q ss_pred HHHHHHH--hChhhhhHhhcchHHHh-----hCCce-eeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHH Q lcl|Aclame:pro 114 PTLVLLA--QLPEYRAMHEVLADECI-----RTWGE-AIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRD 185 (695) Q Consensus 114 ~~~a~~~--~~~~~r~~v~~~a~d~t-----R~~~~-i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~ 185 (695) +.+..|+ .|++..+....+.+..- .+|-+ |++....=.+.++.++. ..+.+..+.|.+.+++-++.. T Consensus 61 ~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-----~~~~~~~~~l~~~~~~n~~~~ 135 (511) T protein:vir:96 61 KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ-----DDDKDVLEAIEAFNDLNDVES 135 (511) T ss_pred HHHHHHhcccCccccccCcCcccccCcceeecchHHHHHHHHHhhhccCCceee-----cCchHHHHHHHHHHhhcCHHH Confidence 4444444 35544332222211111 12211 22111111222222221 234456677888888888999 Q ss_pred HHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc Q lcl|Aclame:pro 186 AVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG 265 (695) Q Consensus 186 ~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~ 265 (695) .+.++.+....||.++.++.++.++.. .+.+++|.++.|..-+. ....+-++ -.+|.+.. T Consensus 136 ~~~~~~~~~~i~G~a~~~vy~ded~~~------------------~i~~~~p~~~~~vydd~-~~~~~~~~-vr~~~~~~ 195 (511) T protein:vir:96 136 HNRSLGLDLSIYGKAYELMIRNQDDET------------------RLYKSDAMSTFVIYDNT-IERNSIAG-VRYLRTKP 195 (511) T ss_pred HHHHHHHHHHhcCeeEEEEEeCCCCce------------------EEEEEccceeEEEEcCC-CCCceEEE-EEEEEeee Confidence 999999999999999999887654421 13333444433321110 00011110 01111100 Q ss_pred -----------eE-EchhhEEEecCC--------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHH Q lcl|Aclame:pro 266 -----------TE-VHATRLHTIVSR--------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQS 313 (695) Q Consensus 266 -----------~~-iH~SRli~~~~~--------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~ 313 (695) .. +.+.++.+|... .+|-. .-.++.+|.|.++.+.+.+.+++.+... T Consensus 196 ~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv-~~~nn~~g~gd~e~v~~liDa~d~~~S~ 274 (511) T protein:vir:96 196 IDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPIT-EFSNNERRKGDYEKVITLIDLYDNAESD 274 (511) T ss_pred ccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeE-EecCCCCCCCchhhhHHHHHHHHHHHHH Confidence 00 112222222110 01111 0123557999999999999999999999 Q ss_pred HHHHHHHhccceeeechHHhhcchHHHHH-HHHHHHHH-HhcCCceeEEEEcCCceeEE--EecccCChHHHHHHHHHHH Q lcl|Aclame:pro 314 VSDIVKQFSVSGILMDLAQALMPGANVDL-SMRAELIN-RYRDNRNILFLDKATEEFFQ--FNTPLSGLDALQAQAQEQM 389 (695) Q Consensus 314 ~~~l~~~~~~~v~k~~~~~~l~~~~~~~l-~~r~~~~~-~~~~n~~~~~ld~~~e~~~~--~~~~lsgl~~~~~~~~~~i 389 (695) .+.-+..++..++.+.+............ ..++..+. ....+.+..-.+ ++.++.. .+.+.+++...++...+.| T Consensus 275 ~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~e~~~~~L~~~I 353 (511) T protein:vir:96 275 TANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETE-GSVDGGYIYKQYDVQGTEAYKDRLNSDI 353 (511) T ss_pred HHHHHHHhhCceeeeecCccCCchhhcccccccceecccccccccccccCC-CCcceeEEeecCCHHHHHHHHHHHHHHH Confidence 99888877776665543222111111000 01111110 011111111111 1233443 4566779999999999999 Q ss_pred HhhhcCCceeeeccCcccccCcchHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHH--hcCCC--C---CceeEEecc Q lcl|Aclame:pro 390 SAVSHIPLIKLLGITPTGLNASSEGEIRVWYDY--VRAYQRNALQQLMNDVIVMIQLS--LFGAV--D---PSIKWQWNA 460 (695) Q Consensus 390 aaas~iP~t~L~G~sp~Glnatge~D~~nyyd~--i~~~Qe~~l~p~l~~l~~~l~~s--~~g~~--~---~d~~~~f~p 460 (695) ...+++|-.-.-+. +| |.||+.=..-|... -...++..++..|++++.+++.- .-+.. + .++++.|++ T Consensus 354 ~~~s~~p~~~~~~~--~~-n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~ 430 (511) T protein:vir:96 354 HMFTNTPNMKDDNF--SG-TQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNR 430 (511) T ss_pred HHHhCCcccccccc--cc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccceEEeCC Confidence 99999998654222 22 45666322222222 12335667889999988887632 12222 1 257899999 Q ss_pred ccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccc Q lcl|Aclame:pro 461 LRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDT 540 (695) Q Consensus 461 L~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (695) -...+..+.+++..+. .|.++...+...+....+. ........................ .. T Consensus 431 ~~p~n~~e~~~~~~kl---------~G~iS~et~l~~l~~v~D~-------~~E~~ri~~E~~~~~~~~~~~~~~---~~ 491 (511) T protein:vir:96 431 NLPKSLIEELKAYIDS---------GGKISQTTLMSLFSFFQDP-------ELEVKKIEEDEKESIKKAQKGIYK---DP 491 (511) T ss_pred CCCCCHHHHHHHHHHH---------hccCChHHHHHhCCCCCCH-------HHHHHHHHHHHHHHHHHHhhcccc---CC Confidence 8888888887755432 3667766665544321110 000000000000000000000000 00 Q ss_pred ccccccCCCccchhhhhhhh Q lcl|Aclame:pro 541 GAPGGARAGATAPPTVANVN 560 (695) Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~ 560 (695) .................... T Consensus 492 ~~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:96 492 RDINDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCCCCcccccccccC Confidence 00000000000000000000 No 178 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=97.82 E-value=1.7e-05 Score=46.75 Aligned_cols=447 Identities=9% Similarity=0.011 Sum_probs=182.5 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccccccccccccc----ccchhhh-hhhc---cCCCCchHHHH Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFN----GTSMDAL-SFVT---SSGFPGFPTLV 117 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~---~~~f~gy~~~a 117 (695) |-.-+.|.+.. +.-+|--..-.. .....|-+... ..+...+ .+.. .---.-|+.+. T Consensus 1 ~~~~~~~~~~~-----------~~~~~~~~~~~~-----~~n~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~l~ 64 (511) T protein:vir:10 1 MLKVNEFETDT-----------DLRGNINYLFND-----EANVVYTYDGTESDLLQNVNEVSKCIEHHMDYQRPRLKVLS 64 (511) T ss_pred Cccccchhhhh-----------hhhhhhhhhhhh-----hhcCCccCchhhhhcccCHHHHHHHHHHHHHhhHHHHHHHH Confidence 22222221110 000000000000 00000000000 0000000 0100 00001233333 Q ss_pred HHH--hChhhhhHhhcchHHH-----hhCCce-eeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHH Q lcl|Aclame:pro 118 LLA--QLPEYRAMHEVLADEC-----IRTWGE-AIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRT 189 (695) Q Consensus 118 ~~~--~~~~~r~~v~~~a~d~-----tR~~~~-i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 189 (695) .|+ .|++..+......+.. .-+|-+ |++....=.+.++.++. ..+.+..+.|...+++-++...+.+ T Consensus 65 ~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-----~~d~~~~~~l~~~~~~n~~~~~~~~ 139 (511) T protein:vir:10 65 DYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ-----DDDKDVLEAIEAFNDLNDVESHNRS 139 (511) T ss_pred HHhcccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceee-----cCchHHHHHHHHHHhhcCHHHHHHH Confidence 333 2443322111111110 011211 11111111122222221 2344566778888888888999999 Q ss_pred HHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceec--------------cccccccc Q lcl|Aclame:pro 190 TVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNS--------------INPVADDF 255 (695) Q Consensus 190 a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~--------------~dp~s~~y 255 (695) +.+..-.||.++.++.++.++... +.+++|.++.|..-+. .++...+. T Consensus 140 ~~~~~~i~G~ay~~vy~dedg~~~------------------i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~ 201 (511) T protein:vir:10 140 LGLDLSIYGKAYEIMIRNQDDETR------------------LYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDE 201 (511) T ss_pred HHHHHHhcCeeEEEEEeCCCCceE------------------EEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCcc Confidence 999999999999998886554321 2333333333321110 00000011 Q ss_pred CCceeEEEcceEEchhhEEEecCC--------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHH Q lcl|Aclame:pro 256 YKPSTWWMIGTEVHATRLHTIVSR--------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 315 (695) Q Consensus 256 g~P~~y~i~~~~iH~SRli~~~~~--------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~ 315 (695) ....++.| +...++..|... .+|-. .-.++.+|.|.++.+.+.+.+++.+....+ T Consensus 202 ~~~~~~~i----yt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv-~f~nn~~g~gd~e~v~~liDa~d~~~S~~~ 276 (511) T protein:vir:10 202 DEVFTVDL----FTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPIT-EFSNNERRKGDYEKVITLIDLYDNAESDTA 276 (511) T ss_pred ceEEEEEE----EeCCcEEEEEecCCCcccccccccccccccCcceeEE-EecCCCCCCCchhhhHHHHHHHHHHHHHHH Confidence 11111111 011122222110 01111 012345799999999999999999998888 Q ss_pred HHHHHhccceeeechHHhhcchHHHHHH-HHHHHHHH-hcCCceeEEEEcCCceeE--EEecccCChHHHHHHHHHHHHh Q lcl|Aclame:pro 316 DIVKQFSVSGILMDLAQALMPGANVDLS-MRAELINR-YRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQAQEQMSA 391 (695) Q Consensus 316 ~l~~~~~~~v~k~~~~~~l~~~~~~~l~-~r~~~~~~-~~~n~~~~~ld~~~e~~~--~~~~~lsgl~~~~~~~~~~iaa 391 (695) ..+..++...+.+.+............. .++-.+.. ...+.+..-.+ ++.+++ +.+.+.++....++...+.|.. T Consensus 277 ~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~ 355 (511) T protein:vir:10 277 NYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETE-GSVDGGYIYKQYDVQGTEAYKDRLNSDIHM 355 (511) T ss_pred HHHHHhhCceeeeeccccCCchhhccchhccceecccccccccccccCC-CCcceeEEeecCCHHHHHHHHHHHHHHHHH Confidence 8888777766655432221111111100 01111100 00111111111 123344 4456678999999999999999 Q ss_pred hhcCCceeeeccCcccccCcchHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHH--hcCCC--C---CceeEEeccc Q lcl|Aclame:pro 392 VSHIPLIKLLGITPTGLNASSEGEIRVWYDYV---RAYQRNALQQLMNDVIVMIQLS--LFGAV--D---PSIKWQWNAL 461 (695) Q Consensus 392 as~iP~t~L~G~sp~Glnatge~D~~nyyd~i---~~~Qe~~l~p~l~~l~~~l~~s--~~g~~--~---~d~~~~f~pL 461 (695) .+.+|-.-.-+. +| |.||+. ++.=+... ...++..++..|++++.+++.- ..+.. + .++++.|++- T Consensus 356 ~s~~P~~~~~~~--~~-n~Sg~A-l~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~ 431 (511) T protein:vir:10 356 FTNTPNMKDDNF--SG-TQSGEA-MKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRN 431 (511) T ss_pred HhCCcccccccc--cc-cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceeeEEeCCC Confidence 999998644222 22 456663 43222221 2335667899999988887532 12221 2 2578999999 Q ss_pred cccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccc Q lcl|Aclame:pro 462 RELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTG 541 (695) Q Consensus 462 ~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (695) ...+..+.++...+. .|.++...+...+....+. ..+..................... ... T Consensus 432 ~p~d~~~~~~~~~kl---------~G~iS~et~~~~l~~v~d~-------~~E~~ri~~E~~~~~~~~~~~~~~---~~~ 492 (511) T protein:vir:10 432 LPKSLIEELKAYIDS---------GGKISQTTLMSLFSFFQDP-------ELEVKKIEEDEKESIKKAQKGIYK---DPR 492 (511) T ss_pred CCcCHHHHHHHHHHH---------hccCcHHHHHHhCCCCCCH-------HHHHHHHHHHHHHHHHHHhhhccc---CCC Confidence 988888887755543 2566666555444321110 000000000000000000000000 000 Q ss_pred cccccCCCccchhhhhhhh Q lcl|Aclame:pro 542 APGGARAGATAPPTVANVN 560 (695) Q Consensus 542 ~~~~~~~~~~~~~~~~~~~ 560 (695) ................... T Consensus 493 ~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:10 493 DINDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCCCcccCcccccC Confidence 0000000000000000000 No 179 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=97.78 E-value=1.9e-05 Score=46.41 Aligned_cols=407 Identities=10% Similarity=0.036 Sum_probs=173.9 Q ss_pred ccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhc--cCCCCchHHHHHHHh--Chhhhh Q lcl|Aclame:pro 52 LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVT--SSGFPGFPTLVLLAQ--LPEYRA 127 (695) Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~gy~~~a~~~~--~~~~r~ 127 (695) +.-.+-. . |-.+..... .......+.. .....-|..+..|+. |. T Consensus 1 ~~~~~~~----------~---~~~p~d~~~---------------~~~~l~~~i~~~~~~~~r~~~~~~yy~g~~~---- 48 (453) T protein:vir:39 1 MKYKPPK----------L---MTFPKDEPI---------------TNEVVTKFMEKHRLEVARYEYLKNMYRGIMA---- 48 (453) T ss_pred CeecCCc----------c---eEcCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHhhccCc---- Confidence 0000000 0 000000000 0000000000 000011222222221 11 Q ss_pred HhhcchHHHhhCCceeecc--------chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccce Q lcl|Aclame:pro 128 MHEVLADECIRTWGEAIGG--------TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGR 199 (695) Q Consensus 128 ~v~~~a~d~tR~~~~i~~~--------~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~ 199 (695) |...+..+-.|.-.+++.+ ...=.+.++.++. ..+.+..+.|.+.|++-++...+.++.+.+-.||. T Consensus 49 i~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~-----~~d~~~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~ 123 (453) T protein:vir:39 49 IDAEPTKDLWKPDNRLTVNFTKYIVDTFTGYFNGIPVKKS-----HSDKETLSKLQEFDNLNDMEDEESELAKMACIYGR 123 (453) T ss_pred hhcCCCccccCccceeecchHHHHHHHHhhhhcccCceec-----cCChHHHHHHHHHHHhcChhHHHHHHHHHHhhcCe Confidence 1111111212211122111 1111122222221 23445667788889988999999999999999999 Q ss_pred EEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcce----EE-chhhEE Q lcl|Aclame:pro 200 AHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGT----EV-HATRLH 274 (695) Q Consensus 200 ~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~----~i-H~SRli 274 (695) ++.++..+.++.. .+.+++|.++.|..-+..+ ..+-|+- .+|.-.+. .+ -+.++. T Consensus 124 ~~~~v~~d~~g~~------------------~i~~~~p~~~~~v~d~~~~-~~~~~~i-r~~~~~~~~~~~~~yt~~~i~ 183 (453) T protein:vir:39 124 AFELLYQNEETQT------------------NVIYNTPENMFMVYDDTIK-QEPLFAV-RYGYDDDYKLYGEVYTKETTY 183 (453) T ss_pred EEEEEEecCCCce------------------EEEEEcccceEEEecCCCC-CeEEEEE-EEEEeCCeEEEEEEEeCCeEE Confidence 9998887554321 1334444444432111000 0011110 00100000 00 111222 Q ss_pred EecCCc---------------chhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHH Q lcl|Aclame:pro 275 TIVSRP---------------VGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGAN 339 (695) Q Consensus 275 ~~~~~~---------------~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~ 339 (695) .|.+.. +|-. .-.++-+|.|.++.+.+-+.+++++....+.-+..++...+.+.+.. +.+... T Consensus 184 ~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~~~~~g~~-~~~~~~ 261 (453) T protein:vir:39 184 ALNGTMGFYNMTEQAPNPFDDLPVV-EFYFNEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAA-VEEEDL 261 (453) T ss_pred EEEecCCceeeecccccCCCceeEE-EecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCC-CCchhh Confidence 222110 1100 01234579999999999999999999888887777666655543321 111111 Q ss_pred HHHHHHHHHHHHhcCCceeEEEE-----cCCceeE--EEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcc Q lcl|Aclame:pro 340 VDLSMRAELINRYRDNRNILFLD-----KATEEFF--QFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASS 412 (695) Q Consensus 340 ~~l~~r~~~~~~~~~n~~~~~ld-----~~~e~~~--~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatg 412 (695) ..+ +.+ +++.+. .++.++. +.+.+.+++...++...+.|...+++|-.-. + .-| |+|| T Consensus 262 ~~~----------~~~-~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~--~~g-n~Sg 326 (453) T protein:vir:39 262 KNI----------RSN-RVINYYGESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISD-E--SFG-SSSG 326 (453) T ss_pred hhh----------hhc-ceeeecCCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccc-c--ccc-CChH Confidence 111 111 122221 1223333 4456678899999999999999999995322 2 112 4566 Q ss_pred hHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHh--cCCC--CCceeEEeccccccchhHHHHHHHHHHHhhhhhhh Q lcl|Aclame:pro 413 EGEIRVWY---DYVRAYQRNALQQLMNDVIVMIQLSL--FGAV--DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQ 485 (695) Q Consensus 413 e~D~~nyy---d~i~~~Qe~~l~p~l~~l~~~l~~s~--~g~~--~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~ 485 (695) +.=...|. ..++. .+..+...|++++.+++.-. .|.. ..++++.|++....+..+.+++..+.+ T Consensus 327 ~Al~~~~~~l~~ka~~-~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl~-------- 397 (453) T protein:vir:39 327 VSLAYKLQAMSNLALS-FQRKFQSSLNSRYKLYCELSTNVSNKEAWKDIEYTFTRNEPKDIKEQAETANILM-------- 397 (453) T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHHHHHHHHh-------- Confidence 63222233 22323 44557888888888765321 2222 236789999999888888877655542 Q ss_pred hhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhh Q lcl|Aclame:pro 486 EQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANV 559 (695) Q Consensus 486 ~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (695) |.++...+...+....+ .. .......................... ...... ..... T Consensus 398 -g~is~et~l~~l~~v~D------~~-~E~~ri~~E~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~e 453 (453) T protein:vir:39 398 -GITSQETALSVISVIPD------VQ-AEMEKIKKEEASTAIFDKDKQPSEKG---TDTVVP-------ETNEE 453 (453) T ss_pred -ccCChHHHHHhCCCCCC------HH-HHHHHHHHHHHHHHHHHHhccCCCCC---CCCCCC-------CcCCC Confidence 55666555544422111 00 00000000000000000000000000 000000 00000 No 180 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=97.78 E-value=5.8e-06 Score=49.31 Aligned_cols=239 Identities=8% Similarity=-0.039 Sum_probs=123.2 Q ss_pred hhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeecc Q lcl|Aclame:pro 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGG 146 (695) Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~ 146 (695) +..|..++.+..... ............ .+ .+.+...|... ...+++-+..+|++++++.-.--+++... T Consensus 1 MglF~~~~~r~~~~~-~~~~~~~~~~~~--------~~-~~~~~~~v~~~-~al~~~~v~~~i~~ia~~iA~lp~~~~~~ 69 (251) T protein:vir:46 1 MGIFYKNEKRDLQYN-EDDLQMMVQTLP--------SF-QGTKLRQYKDI-EAIRHSDIFTAVMMIASDLARMPIRVTVN 69 (251) T ss_pred CCccccccccccCCC-ccchhhhhhhhc--------cc-cCcCcceechh-hhhccHHHHHHHHHHHHhHhhCceEEeeC Confidence 222222211110000 000000000000 00 00011112111 12256677889999999876655444211 Q ss_pred chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhc-CccceEEEEEEEcCCCchhccccCCcccccc Q lcl|Aclame:pro 147 TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHD-QAFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) Q Consensus 147 ~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~-Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~ 225 (695) . ....+......|...-...--+..|.+++.+. -|+|-+++++.-+. T Consensus 70 ~---------------~~~~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~----------------- 117 (251) T protein:vir:46 70 G---------------QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK----------------- 117 (251) T ss_pred c---------------cccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECC----------------- Confidence 0 00111223333433333333455566666654 45788887765321 Q ss_pred CcceEEEEEecchhccccceecccccccccCCceeEEE------cc--eEEchhhEEEecCCcchhhhhcccCCCCchHH Q lcl|Aclame:pro 226 KGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWM------IG--TEVHATRLHTIVSRPVGDMLKPTYSFAGISMT 297 (695) Q Consensus 226 ~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i------~~--~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l 297 (695) .|.+.+|.++++.+|++.... .|.+.++.. .| ..+.++.||||.+.++ ..+.|.|.+ T Consensus 118 ~G~~~~L~~i~~~~v~v~~~~--------~g~~~~~~~~~~~~~~g~~~~~~~~diiH~r~~~~-------dg~~G~spi 182 (251) T protein:vir:46 118 TGEPMNLTFRKTSEIELKSDA--------RGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSL-------DGINGLSLL 182 (251) T ss_pred CCcEEEEEEECCceEEEEECC--------CCcEEEEEEEeccCCcceeEEECCccEEEecCcCC-------CCeeecCHH Confidence 245678899999988764221 233333321 12 4688899999987542 245899999 Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcch-HHHHHHHHHHHHHHhcCCceeEEEEcCCc Q lcl|Aclame:pro 298 QLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPG-ANVDLSMRAELINRYRDNRNILFLDKATE 366 (695) Q Consensus 298 ~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~-~~~~l~~r~~~~~~~~~n~~~~~ld~~~e 366 (695) +.+.+.|.....+......++..... .+++++ ..+.++ ..+.+.++++.....-+|-|.+++ +.+| T Consensus 183 ~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~--~~l~~~e~~~~~~~~~~~~~~g~~n~g~~~~-gm~~ 251 (251) T protein:vir:46 183 DTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK--GVLDNKKARDRAREEFPKVLVELNKLGKLSY-SMNQ 251 (251) T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeC--CCCCCHHHHHHHHHHHHHHhcCccccccccc-ccCC Confidence 99999999888888888887776443 345555 334333 234566666655555566676665 3344 No 181 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=97.78 E-value=2e-05 Score=46.36 Aligned_cols=447 Identities=10% Similarity=0.011 Sum_probs=190.0 Q ss_pred cchhhhhhhcccccCCCCcccccccccccccccccchhhhhhh---ccCCCCchHHHHHHHh--ChhhhhHhhcchHHHh Q lcl|Aclame:pro 63 PSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFV---TSSGFPGFPTLVLLAQ--LPEYRAMHEVLADECI 137 (695) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~gy~~~a~~~~--~~~~r~~v~~~a~d~t 137 (695) .+..+. -..... -+..+...+..+ ....-.-|..+..|+. |.+..+ +.++-. T Consensus 1 ~~~~~~--------------~~~~~~-----~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~----~~~~~~ 57 (499) T protein:vir:10 1 MAVVID--------------KDLLDD-----VNEPNIEAINYAIRELQNRKKRLDKLSDYYNGKQEIEKH----EFDNAT 57 (499) T ss_pred Cccchh--------------hhHHhh-----hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcC----CcCcCC Confidence 111000 000000 000000000000 0000011233333321 222111 111111 Q ss_pred hCCceeecc--------chhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCC Q lcl|Aclame:pro 138 RTWGEAIGG--------TKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGD 209 (695) Q Consensus 138 R~~~~i~~~--------~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d 209 (695) +.-.+|+.+ -..=.+.++.++. ..+.+..+.|.+.+++-++...+.++.+.+..||.++.++.++.+ T Consensus 58 ~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~-----~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~ 132 (499) T protein:vir:10 58 VEAANVMVNHAKYITDMNVGFMTGNPVKYV-----AEKGKNIDDILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKT 132 (499) T ss_pred CCcceeecchHHHHHHHHhhhhcccCceee-----cCChhHHHHHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEeccc Confidence 111122211 1111122222221 224456677888888888999999999999999999999998776 Q ss_pred CchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc----ce-----EE-chhhEEEecCC Q lcl|Aclame:pro 210 DQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI----GT-----EV-HATRLHTIVSR 279 (695) Q Consensus 210 ~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~----~~-----~i-H~SRli~~~~~ 279 (695) +..+.......... ....-..+.+++|.++.|...+..+ ..+.++ -.+|.+. +. .| -+.++.+|... T Consensus 133 g~~~~~~~~~~~~~-~~~~~~~~~~v~p~~~~~v~~d~~~-~~~~~~-i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~ 209 (499) T protein:vir:10 133 DPISVRDELGNEKL-TPNTELKIEVIDPRATVVVCDDTVE-HDPLFA-VFTQEKKDLEGNTNGYSITVYMPQRIVEYRTK 209 (499) T ss_pred cccccccccccccc-ccccceEEEEEcccceEEEecCCCC-cceEEE-EEEEEEeecCCCceEEEEEEEeCCeEEEEEec Confidence 65432222111111 1112234677787776553211110 000010 0111111 00 11 12233333210 Q ss_pred --------------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHH Q lcl|Aclame:pro 280 --------------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGAN 339 (695) Q Consensus 280 --------------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~ 339 (695) .+|-. .-.++.+|.|.++.+.+-+.+++.+....+..+..++...+.+.+... .... T Consensus 210 ~~~~~~~~~~~~~~~~~~~g~vPvv-~~~n~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~~-~~~~- 286 (499) T protein:vir:10 210 TTMEVSANDPIVYDGENLFGAVPII-EFRNNEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFGL-GDDK- 286 (499) T ss_pred CCccccCcceecccccCCCCccceE-EecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCcc-cccc- Confidence 01111 112456799999999999999999988888888777776666543221 1111 Q ss_pred HHHHHHHHHHHHhcCCceeEEEE-cCCceeEEE--ecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHH Q lcl|Aclame:pro 340 VDLSMRAELINRYRDNRNILFLD-KATEEFFQF--NTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEI 416 (695) Q Consensus 340 ~~l~~r~~~~~~~~~n~~~~~ld-~~~e~~~~~--~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~ 416 (695) .....+. ..++.+++ .++.+++.+ +.+.+++...++...+.|...+++|-.-. + +-+| |.||+.=. T Consensus 287 -~~~~~~~-------~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~-~-~~~g-n~Sg~Al~ 355 (499) T protein:vir:10 287 -DDIQRLK-------RGAIEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMND-E-KFMG-NVSGEAMK 355 (499) T ss_pred -chhhhhh-------hcceeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCc-h-hhcc-cchHHHHH Confidence 1111111 11223332 123445554 45667899999999999999999995321 1 1111 34566322 Q ss_pred HHHHHHH--HHHHhhhhhHHHHHHHHHHHHHh--cCCC--CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcch Q lcl|Aclame:pro 417 RVWYDYV--RAYQRNALQQLMNDVIVMIQLSL--FGAV--DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIR 490 (695) Q Consensus 417 ~nyyd~i--~~~Qe~~l~p~l~~l~~~l~~s~--~g~~--~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~ 490 (695) .-|.... .+..+..+++.+++++.+++.-. -|.- ..++++.|++-..-+..+.++...+. .|.++ T Consensus 356 ~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl---------~g~iS 426 (499) T protein:vir:10 356 FKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIKGANDDASGCKISLVANIPSNLSDVVNNVKNA---------DGIIP 426 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHH---------hccCC Confidence 2233322 23356778999999998877432 1211 23678999998888888887766553 35677 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccc Q lcl|Aclame:pro 491 PDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGA 570 (695) Q Consensus 491 ~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (695) ...+...+....+. . ........... ....... .................................... T Consensus 427 ~et~~~~l~~v~d~------~-~E~~ri~~E~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (499) T protein:vir:10 427 RKYTYSWLPDVDNP------Q-DVIDEMNQQDA-ETIKKNQ---EALRGQDPDRLELEDKQDDSSENDKEAGSNHNQSHR 495 (499) T ss_pred hHHHHHhCCCCCCH------H-HHHHHHHHHHH-HHHHHHH---hhhccCCCCCCCCCCCCcccCCCCCCCccccccCCC Confidence 66665544321110 0 00000000000 0000000 000000000000000000000000000000001111 Q ss_pred cCce Q lcl|Aclame:pro 571 QDAA 574 (695) Q Consensus 571 ~~~~ 574 (695) .+.. T Consensus 496 ~~~~ 499 (499) T protein:vir:10 496 TRAV 499 (499) T ss_pred CCCC Confidence 1100 No 182 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=97.77 E-value=2.1e-05 Score=46.26 Aligned_cols=409 Identities=10% Similarity=0.031 Sum_probs=174.3 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccc--cchhhhhhhcc--CC-CCchHHHHHHH Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNG--TSMDALSFVTS--SG-FPGFPTLVLLA 120 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~-f~gy~~~a~~~ 120 (695) |++ ...+.+.... ......++... .. -.-|..+..|+ T Consensus 1 ~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~yy 42 (489) T protein:vir:99 1 MLQ--------------------------------------EDFEAIDYESKLWIDQLKNYISRFKAEQLERLKELKRYY 42 (489) T ss_pred CCc--------------------------------------cceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 111 0000000000 00000000000 00 00011111121 Q ss_pred ----------------------hChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHH Q lcl|Aclame:pro 121 ----------------------QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEI 178 (695) Q Consensus 121 ----------------------~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 178 (695) .+.+.+.||+..+.=++-+...+ . ..+.+..+.|...+ T Consensus 43 ~g~~~i~~~~~~~~~~~~~~ki~~n~~~~iv~~~~~~l~g~~~~~---------------~-----~~d~~~~~~l~~~~ 102 (489) T protein:vir:99 43 LGDNNIKYRPAKTDKYAADNRIASDFAKYITVFEQGYMLGVPVEY---------------K-----NENKDLQAAIDLMS 102 (489) T ss_pred cccCccccccccccccCCcceeecchHHHHHHHHhhhhccCCcee---------------e-----cCChhHHHHHHHHH Confidence 12334444444443333222222 1 12344556677777 Q ss_pred HhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCc Q lcl|Aclame:pro 179 ERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKP 258 (695) Q Consensus 179 ~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P 258 (695) ++-++...+.++.+.+..||.++.++.+..... ..|. ..+.+++|.++.|...+. ....+.++- T Consensus 103 ~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d-------------~~~~-~~i~~~~p~~~~~v~dd~-~~~~~~~~i- 166 (489) T protein:vir:99 103 VRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDD-------------KKTE-VKLYQLPAEQTFVIYDDT-YQRNSLMAV- 166 (489) T ss_pred hhcChhHHHHHHHHHHhhCCeEEEEEeeccCcC-------------CCcc-eEEEEEcccceEEEEcCC-CCCceEEEE- Confidence 777888899999999999999998877532110 0111 135566666655432111 011111110 Q ss_pred eeEEEc---ce-----E-EchhhEEEecCC-----------cchhhh--hc----ccCCCCchHHHHHHHHHHHHHHHhH Q lcl|Aclame:pro 259 STWWMI---GT-----E-VHATRLHTIVSR-----------PVGDML--KP----TYSFAGISMTQLAMPYIDNWLRTRQ 312 (695) Q Consensus 259 ~~y~i~---~~-----~-iH~SRli~~~~~-----------~~p~~~--~~----~~~~~G~S~l~~~~~~l~~~~~~~~ 312 (695) .+|.+. +. . +.+.++.+|... +.|+.+ -| .++..|.|.++.+.+.+.+++.+.. T Consensus 167 ~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~s~~~~v~~liDa~d~~~s 246 (489) T protein:vir:99 167 HFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYANNEERTGAYESVLDNIDAYDLSQS 246 (489) T ss_pred EEEEEecCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeecCCCCCCchhhhHHHHHHHHHHHH Confidence 112221 00 1 112233333211 111111 11 2456799999999999999999887 Q ss_pred HHHHHHHHhccceeeechHHhhcchHHHHHHHHHH--------HHHHhcCCceeEEEEcC--------CceeEEEecccC Q lcl|Aclame:pro 313 SVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAE--------LINRYRDNRNILFLDKA--------TEEFFQFNTPLS 376 (695) Q Consensus 313 ~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~--------~~~~~~~n~~~~~ld~~--------~e~~~~~~~~ls 376 (695) ..+.-+..++...+.+.+...-..+ ..+...... .....+ ...++.++.. +-+|-+...+.+ T Consensus 247 ~~~~~~~~~~~~~l~i~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (489) T protein:vir:99 247 ELANFQQDSVNALLVIAGNAYTGAD-ENDYLDDGRLNPNGRLAISIGFK-KAQVLILDDNPNPNGVKPQAYFLKKEYDTA 324 (489) T ss_pred HHHHHHHHhhhhhhhhccCCccccc-chhhhhhcccccccccccccccc-cceeeeeccccCccccccceeeeeecCChH Confidence 7777666555444443322111110 001100000 000000 0111222211 123445566777 Q ss_pred ChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHH-HHHHHHH--HHHhhhhhHHHHHHHHHHHHHh---cCCC Q lcl|Aclame:pro 377 GLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIR-VWYDYVR--AYQRNALQQLMNDVIVMIQLSL---FGAV 450 (695) Q Consensus 377 gl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~-nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s~---~g~~ 450 (695) ++...++...+.|...+++|-.-.-+ .+| |.||+. ++ .|...+. ...+..++..|++++.+++.-. .+.. T Consensus 325 ~~~~~~~~l~~~i~~~s~~p~~~~~~--~~~-n~Sg~A-l~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~ 400 (489) T protein:vir:99 325 GSEAYKNRLVADILRFTFTPDTQDMK--FSG-VQSGES-MKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEA 400 (489) T ss_pred HHHHHHHHHHHHHHHHhCCccccccc--ccc-cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc Confidence 89999999999999999999643322 223 567773 43 2333332 2344568889998888765321 1111 Q ss_pred C-----CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 451 D-----PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDID 525 (695) Q Consensus 451 ~-----~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (695) . .++++.|++-...+..+.++...+. .|.++...+...+.... .................. T Consensus 401 ~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl---------~giis~et~~~~l~~v~-----~~d~~~E~~ri~~E~~~~ 466 (489) T protein:vir:99 401 TTYSLVNDTSIVFTPNLPQNDNEIVTAAQNL---------YGIVSDQTIFEILNTVT-----GVDAEAELKRLKEEADKK 466 (489) T ss_pred ccccccccceEEeCCCCCcCHHHHHHHHHHH---------hccCCHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHH Confidence 1 2588999988888888877655543 25666665544432110 000000000000000000 Q ss_pred hhhhhhhhhhhhcccccccccCCCccchhhhhhhhh Q lcl|Aclame:pro 526 GVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNA 561 (695) Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (695) .........+.. ... .......+ T Consensus 467 ~~~~~~~~~~~~--------~~~-----~~~~~~~p 489 (489) T protein:vir:99 467 QSLPEPRLVGDA--------SGQ-----EEPTAEKP 489 (489) T ss_pred hccccccccCCC--------CCC-----cCCCCCCC Confidence 000000000000 000 00000000 No 183 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=97.69 E-value=2.8e-05 Score=45.51 Aligned_cols=431 Identities=13% Similarity=0.052 Sum_probs=170.8 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) |+-|- .|..-+... -..|...+-.+..+..-...++....-. T Consensus 1 m~~~~--------------------------~~k~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~i---------- 42 (500) T protein:vir:98 1 MGVIQ--------------------------KIKNLVTRS--KYVMTTQSLTNITDHPKIAISKLEYDRI---------- 42 (500) T ss_pred CchHH--------------------------HHHHHHHHH--HHHhhcchhhhhhccccccCCHHHHHHH---------- Confidence 43333 322211000 0001111100000000000000000000 Q ss_pred cccccccccccccccccchhhhhhhccCCCCchHHH--------HHHHhChhhhhHhhcchHHHhhCCceeeccchhhhh Q lcl|Aclame:pro 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTL--------VLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKAD 152 (695) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~--------a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~ 152 (695) .....||.+ -+.+.... .......+.+.+|+..|+=++-+--.|. T Consensus 43 ------------------~~~~~~Y~g-~~~~~~~~~~~~~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~-------- 95 (500) T protein:vir:98 43 ------------------TTNLKYYKS-DWDSVLYLNTDGETKKRDLNHLPIARTAAKKIASLVFNEQAEIK-------- 95 (500) T ss_pred ------------------HHHHHHhcC-CCCCcccccCCCCcccCceeecchHHHHHHHHhhhhcCCcceEe-------- Confidence 000011110 00000000 0000113344444444432222211221 Q ss_pred ccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCch--hccccCCccccccCcceE Q lcl|Aclame:pro 153 TSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQI--MDTPLVPRPYTVPKGSFQ 230 (695) Q Consensus 153 ~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~--~~~Pl~~~~~~i~~g~l~ 230 (695) -.++...+.|++.++.-+++..+.+++..+-.+|++++-+-++++... +-.|-..-|..-..+.+. T Consensus 96 ------------~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~v~ad~~~P~~~d~~~~~ 163 (500) T protein:vir:98 96 ------------VDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAFVQAPVFLPLQSNTQDVS 163 (500) T ss_pred ------------cCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEEEcCCeeEEEEEcCCCeE Confidence 113456667888888888999999999999889999887776543211 111110000000000111 Q ss_pred EEEEecchhccccceecccccccccC-Cce--------eEEEcc------------eEE-----chh--hEEEecCCcch Q lcl|Aclame:pro 231 GLRVVEPYWVTPNNYNSINPVADDFY-KPS--------TWWMIG------------TEV-----HAT--RLHTIVSRPVG 282 (695) Q Consensus 231 ~l~v~d~~~i~p~~~~~~dp~s~~yg-~P~--------~y~i~~------------~~i-----H~S--Rli~~~~~~~p 282 (695) -..++.+.- ...+ ....|| .-+ .|.|.. ..| +.. --..+.|-+.| T Consensus 164 ~~a~~~~~~------~~~~-~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p 236 (500) T protein:vir:98 164 SAAVVIKSV------KTIN-GKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRP 236 (500) T ss_pred EEEEEEEEe------eeec-CCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCc Confidence 111111000 0000 000111 001 122211 111 100 00111111111 Q ss_pred hh--h-------hcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeec-hHHhh-cchHHHHHH-HHHHHHH Q lcl|Aclame:pro 283 DM--L-------KPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMD-LAQAL-MPGANVDLS-MRAELIN 350 (695) Q Consensus 283 ~~--~-------~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~-~~~~l-~~~~~~~l~-~r~~~~~ 350 (695) .. . ......+|+|++..+.+.+..++.+......-+......++--. +...- .+...+.+. .++.. T Consensus 237 ~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~~~~~~~d~-- 314 (500) T protein:vir:98 237 IFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDGDVVPRPRFES-- 314 (500) T ss_pred cEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCccccCCcccCC-- Confidence 10 0 01123469999999999999999999888876655444433221 22211 110000000 01110 Q ss_pred HhcCCceeEEEE---cCCceeEEEeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchH---HHHHHHHH Q lcl|Aclame:pro 351 RYRDNRNILFLD---KATEEFFQFNTPL--SGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEG---EIRVWYDY 422 (695) Q Consensus 351 ~~~~n~~~~~ld---~~~e~~~~~~~~l--sgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~---D~~nyyd~ 422 (695) . .+--..++ .++..++.++..+ ..+...++.+.+.++..+|++-..| |...+|. .|+.+ ..+.-|.+ T Consensus 315 --~-~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~-~~~~~g~-~TAtei~s~~~~~~~t 389 (500) T protein:vir:98 315 --D-QNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLF-SFDGKSM-KTATEIVSENSDTYQM 389 (500) T ss_pred --C-cceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCcccc-ccCcCcc-ccHHHHHHHHHHHHHH Confidence 0 00011122 2233477766554 4577788888899999999887766 4344555 34442 33456667 Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH-----hc-CCC--CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhh Q lcl|Aclame:pro 423 VRAYQRNALQQLMNDVIVMIQLS-----LF-GAV--DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQV 494 (695) Q Consensus 423 i~~~Qe~~l~p~l~~l~~~l~~s-----~~-g~~--~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~ 494 (695) +..+|. .++..|++++..++.- .+ +.+ +.++++.|++--..+..+.++ ...+++.+|+++..+. T Consensus 390 ~~~~~~-~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~-------~~~~~v~aGi~s~~~~ 461 (500) T protein:vir:98 390 RNSIVA-LVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELD-------YWIKVVNAGFGTREMA 461 (500) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHH-------HHHHHHHcCCCCHHHH Confidence 777654 4788999988877532 12 222 336889999877777655433 3334455566666554 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---hhhhhhh Q lcl|Aclame:pro 495 AARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLT---YVQRLAE 536 (695) Q Consensus 495 r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 536 (695) ....- +.... ................... .....+. T Consensus 462 i~~~~-----g~~ee-ea~~~l~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:98 462 IQKVL-----NVTEE-KAQEIAAEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred HHhcC-----CCCHH-HHHHHHHHHHHhccccCCCCCccccccCC Confidence 32211 11000 0000000000000000000 0000000 No 184 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=97.69 E-value=2.8e-05 Score=45.51 Aligned_cols=431 Identities=13% Similarity=0.052 Sum_probs=170.8 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNY 80 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (695) |+-|- .|..-+... -..|...+-.+..+..-...++....-. T Consensus 1 m~~~~--------------------------~~k~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~i---------- 42 (500) T protein:vir:30 1 MGVIQ--------------------------KIKNLVTRS--KYVMTTQSLTNITDHPKIAISKLEYDRI---------- 42 (500) T ss_pred CchHH--------------------------HHHHHHHHH--HHHhhcchhhhhhccccccCCHHHHHHH---------- Confidence 43333 322211000 0001111100000000000000000000 Q ss_pred cccccccccccccccccchhhhhhhccCCCCchHHH--------HHHHhChhhhhHhhcchHHHhhCCceeeccchhhhh Q lcl|Aclame:pro 81 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTL--------VLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKAD 152 (695) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~--------a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~ 152 (695) .....||.+ -+.+.... .......+.+.+|+..|+=++-+--.|. T Consensus 43 ------------------~~~~~~Y~g-~~~~~~~~~~~~~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~-------- 95 (500) T protein:vir:30 43 ------------------TTNLKYYKS-DWDSVLYLNTDGETKKRDLNHLPIARTAAKKIASLVFNEQAEIK-------- 95 (500) T ss_pred ------------------HHHHHHhcC-CCCCcccccCCCCcccCceeecchHHHHHHHHhhhhcCCcceEe-------- Confidence 000011110 00000000 0000113344444444432222211221 Q ss_pred ccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCch--hccccCCccccccCcceE Q lcl|Aclame:pro 153 TSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQI--MDTPLVPRPYTVPKGSFQ 230 (695) Q Consensus 153 ~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~--~~~Pl~~~~~~i~~g~l~ 230 (695) -.++...+.|++.++.-+++..+.+++..+-.+|++++-+-++++... +-.|-..-|..-..+.+. T Consensus 96 ------------~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~~v~ad~~~P~~~d~~~~~ 163 (500) T protein:vir:30 96 ------------VDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDGDKVRVAFVQAPVFLPLQSNTQDVS 163 (500) T ss_pred ------------cCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEEEEcCCeeEEEEEcCCCeE Confidence 113456667888888888999999999999889999887776543211 111110000000000111 Q ss_pred EEEEecchhccccceecccccccccC-Cce--------eEEEcc------------eEE-----chh--hEEEecCCcch Q lcl|Aclame:pro 231 GLRVVEPYWVTPNNYNSINPVADDFY-KPS--------TWWMIG------------TEV-----HAT--RLHTIVSRPVG 282 (695) Q Consensus 231 ~l~v~d~~~i~p~~~~~~dp~s~~yg-~P~--------~y~i~~------------~~i-----H~S--Rli~~~~~~~p 282 (695) -..++.+.- ...+ ....|| .-+ .|.|.. ..| +.. --..+.|-+.| T Consensus 164 ~~a~~~~~~------~~~~-~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p 236 (500) T protein:vir:30 164 SAAVVIKSV------KTIN-GKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRP 236 (500) T ss_pred EEEEEEEEe------eeec-CCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCc Confidence 111111000 0000 000111 001 122211 111 100 00111111111 Q ss_pred hh--h-------hcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeec-hHHhh-cchHHHHHH-HHHHHHH Q lcl|Aclame:pro 283 DM--L-------KPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMD-LAQAL-MPGANVDLS-MRAELIN 350 (695) Q Consensus 283 ~~--~-------~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~-~~~~l-~~~~~~~l~-~r~~~~~ 350 (695) .. . ......+|+|++..+.+.+..++.+......-+......++--. +...- .+...+.+. .++.. T Consensus 237 ~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~~~~~~~d~-- 314 (500) T protein:vir:30 237 IFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDGDVVPRPRFES-- 314 (500) T ss_pred cEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCccccCCcccCC-- Confidence 10 0 01123469999999999999999999888876655444433221 22211 110000000 01110 Q ss_pred HhcCCceeEEEE---cCCceeEEEeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchH---HHHHHHHH Q lcl|Aclame:pro 351 RYRDNRNILFLD---KATEEFFQFNTPL--SGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEG---EIRVWYDY 422 (695) Q Consensus 351 ~~~~n~~~~~ld---~~~e~~~~~~~~l--sgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~---D~~nyyd~ 422 (695) . .+--..++ .++..++.++..+ ..+...++.+.+.++..+|++-..| |...+|. .|+.+ ..+.-|.+ T Consensus 315 --~-~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~-~~~~~g~-~TAtei~s~~~~~~~t 389 (500) T protein:vir:30 315 --D-QNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLF-SFDGKSM-KTATEIVSENSDTYQM 389 (500) T ss_pred --C-cceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCcccc-ccCcCcc-ccHHHHHHHHHHHHHH Confidence 0 00011122 2233477766554 4577788888899999999887766 4344555 34442 33456667 Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH-----hc-CCC--CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhh Q lcl|Aclame:pro 423 VRAYQRNALQQLMNDVIVMIQLS-----LF-GAV--DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQV 494 (695) Q Consensus 423 i~~~Qe~~l~p~l~~l~~~l~~s-----~~-g~~--~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~ 494 (695) +..+|. .++..|++++..++.- .+ +.+ +.++++.|++--..+..+.++ ...+++.+|+++..+. T Consensus 390 ~~~~~~-~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~-------~~~~~v~aGi~s~~~~ 461 (500) T protein:vir:30 390 RNSIVA-LVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELD-------YWIKVVNAGFGTREMA 461 (500) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHH-------HHHHHHHcCCCCHHHH Confidence 777654 4788999988877532 12 222 336889999877777655433 3334455566666554 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---hhhhhhh Q lcl|Aclame:pro 495 AARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLT---YVQRLAE 536 (695) Q Consensus 495 r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 536 (695) ....- +.... ................... .....+. T Consensus 462 i~~~~-----g~~ee-ea~~~l~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:30 462 IQKVL-----NVTEE-KAQEIAAEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred HHhcC-----CCCHH-HHHHHHHHHHHhccccCCCCCccccccCC Confidence 32211 11000 0000000000000000000 0000000 No 185 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=97.56 E-value=4.5e-05 Score=44.41 Aligned_cols=421 Identities=11% Similarity=0.071 Sum_probs=172.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccc---ccccc--ccccchhhhhhhccC-CCCchHHH--- Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAA---SYALD--FNGTSMDALSFVTSS-GFPGFPTL--- 116 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~-~f~gy~~~--- 116 (695) |.=-.+.. +.++.-..+++... +..... -.+++ +..+-.....||.+- .|.-|+.. T Consensus 1 m~~~~~~k--------------~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~ 65 (508) T protein:vir:15 1 MGLIQRIK--------------DLFWKGAAATGVTG-SLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGI 65 (508) T ss_pred CChHHHHH--------------HHHHHHHHHhcccc-chHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCC Confidence 11100000 00000000010000 000000 00000 000000011122211 11111100 Q ss_pred ---HHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHh Q lcl|Aclame:pro 117 ---VLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIH 193 (695) Q Consensus 117 ---a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~ 193 (695) .....-.+.+.||+..|+=++-+-..|. + +.+....+.|.+.+++-+++..+.+++.. T Consensus 66 ~~~~~~~sln~~~~i~~~~A~lv~~e~~~i~-------------v------~~~~~~~e~l~~il~~n~f~~~~~~~~e~ 126 (508) T protein:vir:15 66 KKKRLKNTINMAKTAARRIASVVFNEKAEIH-------------V------KDNNEADKFLNDVLEDNDFKNKFEEALEK 126 (508) T ss_pred ccccceeecchHHHHHHHHHhhhhCCCceEE-------------e------CCchHHHHHHHHHHHhccHHHHHHHHHHH Confidence 0001123445555555544443322221 0 11223334577788888889999999999 Q ss_pred cCccceEEEEEEEcCCCchh--c-----cccCCccccccCcceEEEEEecchhccccceecccccccccC-Cc------- Q lcl|Aclame:pro 194 DQAFGRAHPYFKIKGDDQIM--D-----TPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFY-KP------- 258 (695) Q Consensus 194 ~Rl~G~~~i~i~~~~d~~~~--~-----~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg-~P------- 258 (695) +-.+||+++-+.++++...+ - -|+..+ .+.+..+.++.+..... -....|+ .- T Consensus 127 a~a~G~~~~k~~~d~~~~~i~~v~ad~~~P~~~d-----~~~~~~~af~~~~~~~~-------~~~~~~yt~lE~h~~~~ 194 (508) T protein:vir:15 127 GVALGGFAMRPYIDGNHIKIAWVRADQFYPLQSN-----TNDISEAAIASRTQRTE-------SNQTKYYTLLEFHQWQD 194 (508) T ss_pred HhhcCceEEEEEEeCCeeEEEEEcCCeeEEEEEc-----CCCeEEEEEEEEEEeec-------CCCceEEEEEEEEEEec Confidence 98899999887765432211 1 122111 12222222222211000 0000000 00 Q ss_pred -eeEEEc------------ceEEchhhE---------EEecCC----------cchhhhhcccCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 259 -STWWMI------------GTEVHATRL---------HTIVSR----------PVGDMLKPTYSFAGISMTQLAMPYIDN 306 (695) Q Consensus 259 -~~y~i~------------~~~iH~SRl---------i~~~~~----------~~p~~~~~~~~~~G~S~l~~~~~~l~~ 306 (695) ..|.|. |..|.-+.+ ..+.|. +.|+.. ..+..+|+|++..+.+.+.. T Consensus 195 ~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~~~p~f~y~~~~~~N~~-~~~splG~S~~~~~~~lid~ 273 (508) T protein:vir:15 195 NGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNI-NIESPLGLGVVDNAKHVLDD 273 (508) T ss_pred CcceEEEEEEEecCCchhcCcccchhhcccccCCCcceEecCCCcceeEEecCCccccc-cCCCCcCCchHhhhHHHHHH Confidence 011111 111111110 112221 112211 11345799999999999999 Q ss_pred HHHHhHHHHHHHHHhccceeeec-hHHhhcchHHHHHHHHHHHHHHhcCCceeE-EE--Ec-CCceeEEEeccc--CChH Q lcl|Aclame:pro 307 WLRTRQSVSDIVKQFSVSGILMD-LAQALMPGANVDLSMRAELINRYRDNRNIL-FL--DK-ATEEFFQFNTPL--SGLD 379 (695) Q Consensus 307 ~~~~~~~~~~l~~~~~~~v~k~~-~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~-~l--d~-~~e~~~~~~~~l--sgl~ 379 (695) ++.+......-+......++-.. +... .+++.. .+ ..+...+ .+ +. .+..++.++..+ .... T Consensus 274 lD~~~s~~~~e~~~~~~~i~v~~~~l~~-d~~~~~-------~~---~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~ 342 (508) T protein:vir:15 274 INDTHDQFIWEIRLGQKHIAVQPGMLRF-DDEHKP-------TF---DTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYK 342 (508) T ss_pred HHHHHHHHHHHHHhcccceeechHHhcC-CCCCcc-------cc---CCCCeeEEeccCCCCCCCceeEeecccChHHHH Confidence 99998888776654444444322 2211 111110 11 1111111 11 11 123477776554 3477 Q ss_pred HHHHHHHHHHHhhhcCCceeeeccCcccccCcchH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-------cC- Q lcl|Aclame:pro 380 ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEG---EIRVWYDYVRAYQRNALQQLMNDVIVMIQLSL-------FG- 448 (695) Q Consensus 380 ~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~---D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~-------~g- 448 (695) +.++.+.+.+...+|++-.- ||...+|. .|+.. ..+.-|.++..+| +.++..|++++..|+... .| T Consensus 343 ~~~~~~l~~~~~~~gls~~~-f~~~~~~~-~TAtei~s~~~~~~~t~~~~~-~~~~~al~~lv~~il~l~~~~~~~~~g~ 419 (508) T protein:vir:15 343 DAIDHFIKEFEVQIGLSTGT-FSYSNDGV-KTATEVVSNNSMTYQTRSSYL-TMVEKAIDELCQSIFELANAGALFDDGK 419 (508) T ss_pred HHHHHHHHHHHHHhCCCchh-cccccCcc-ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhccccccc Confidence 88888888888899988654 46555565 45542 3445566666665 447888888877765332 11 Q ss_pred --------CCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 449 --------AVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPA 520 (695) Q Consensus 449 --------~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~ 520 (695) ..+.+++|.|++--..+..+.++ ....++.+|+++..+..... ++.....-..+...... T Consensus 420 ~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~-------~~~~~v~aGi~s~e~~i~~~-----~g~~deea~~el~ri~~ 487 (508) T protein:vir:15 420 PLFTLDSASQPLDIECHFDDGVFVNKDKQLE-------EDAKVLAIGALSKQTFLQRN-----YGMTDEQAAEELAKIQS 487 (508) T ss_pred cccccccccCCcceEEEeCCCCCCCHHHHHH-------HHHHHHhcCCCCHHHHHHhc-----CCCChHHHHHHHHHHHH Confidence 11346889999988887766533 33334445655554432211 11100000000000000 Q ss_pred hhh-hhhhhh-hhhhhhhhcc Q lcl|Aclame:pro 521 DDD-IDGVLT-YVQRLAEGGD 539 (695) Q Consensus 521 ~~~-~~~~~~-~~~~~~~~~~ 539 (695) ... ...... .....+.... T Consensus 488 E~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 488 EAPTDTFEGGRSAILNGGDGE 508 (508) T ss_pred hccccCccccccccCCCCCCC Confidence 000 000000 0000000000 No 186 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=97.56 E-value=4.5e-05 Score=44.40 Aligned_cols=450 Identities=11% Similarity=0.004 Sum_probs=182.6 Q ss_pred hhhccccc--cccc--ccccccchhhhhhhcccccCCCCcccccccccccccccccchhhh-hhhc--cCC-CCchHHHH Q lcl|Aclame:pro 46 MGRRGALN--ALDA--APVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVT--SSG-FPGFPTLV 117 (695) Q Consensus 46 ~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~-f~gy~~~a 117 (695) |.. +-+- .... .-...+....+.|... .+-.. +......+ .+.. ... ..-|..+. T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~-~~~~~~~l~~~i~~~~~~~~~r~~~l~ 63 (501) T protein:vir:27 1 MEQ-TLFTDSTGQDLVLNLRFHRESRIRYRAD---------------NLEEL-MVNNWELLKNFINHHKLRQAPRIQELL 63 (501) T ss_pred CCc-eeEEeccchhhhhhcccChhHHHhhccc---------------ccccc-ccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 110 0000 0000 0000001111111000 00000 00000000 0000 000 01122233 Q ss_pred HHHh--ChhhhhHhhcchHHHhh-------CCc-eeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHH Q lcl|Aclame:pro 118 LLAQ--LPEYRAMHEVLADECIR-------TWG-EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAV 187 (695) Q Consensus 118 ~~~~--~~~~r~~v~~~a~d~tR-------~~~-~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 187 (695) .|+. |..+.+... ..+..+ +|- .|++....=.+.+++++.+... +.++...+.|.+.+++-++...+ T Consensus 64 ~yY~g~~~~i~~~~~--~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~-~~~~~~~~~l~~~~~~n~~~~~~ 140 (501) T protein:vir:27 64 DYARGENHDVLQFGR--RKDREMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDN-DNNSQNDDTIKRIGRINDIDSHN 140 (501) T ss_pred HHhcCCCccccccCc--cCccccccceeccchHHHHHHHHhhhhcccCeeEecCCc-cchHHHHHHHHHHHHhcChhHHH Confidence 3321 111111111 111111 121 1222211112333333333222 22334455677778888999999 Q ss_pred HHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc--- Q lcl|Aclame:pro 188 RTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--- 264 (695) Q Consensus 188 ~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~--- 264 (695) .++.+..-.||.+++++..+.++.. .+.+++|.++.|..-+. ....+.++ -.+|.+. T Consensus 141 ~~~~~~~~~~G~a~~~vy~ded~~~------------------~i~~~~p~~~~~v~d~~-~~~~~~~~-ir~~~~~~~~ 200 (501) T protein:vir:27 141 RTLIRDLSQTGRAYEVIYRNEYDET------------------RIKRLNPLETFVIYDNS-LEDNSIAA-VRYYNRGTLQ 200 (501) T ss_pred HHHHHHHhhCCeEEEEEEeCCCCce------------------EEEEEccceeEEEecCC-CCCceEEE-EEEEEeeecC Confidence 9999999999999999887654421 13444554444421110 00001111 0111110 Q ss_pred -c---eEE-chhhEEEecCC--------------cchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccce Q lcl|Aclame:pro 265 -G---TEV-HATRLHTIVSR--------------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSG 325 (695) Q Consensus 265 -~---~~i-H~SRli~~~~~--------------~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v 325 (695) + ..| -..++..|... .+|-. .-.++-.|.|.++.+.+-+.+++.+....+.-+..++... T Consensus 201 ~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv-~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~ 279 (501) T protein:vir:27 201 NAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPIT-EFLNNVDGIGDYETELYLIDLYDSAESDTANHMSDMADAI 279 (501) T ss_pred CcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEE-EecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCce Confidence 0 011 12222222211 11111 1123567999999999999999999999888888888777 Q ss_pred eeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeE--EEecccCChHHHHHHHHHHHHhhhcCCceeeecc Q lcl|Aclame:pro 326 ILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFF--QFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGI 403 (695) Q Consensus 326 ~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~--~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~ 403 (695) +.+.+......+....-.+...++.. .......... .+.+++ ..+.+.+++...++...+.|...+++|-.-+-+. T Consensus 280 ~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~ 357 (501) T protein:vir:27 280 LAIYGDLALPKGMQASDMKRTRLMQL-KPPKSADGKE-GTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPDMSDTNF 357 (501) T ss_pred eeeecCccCCcccchhhhhhcCceee-cccccccCCC-CCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCCcccCcccc Confidence 77654322111111000011111110 0010001111 122344 4455667899999999999999999996443221 Q ss_pred CcccccCcchHHHHH-HHH--HHHHHHhhhhhHHHHHHHHHHHHHh--cCC---C-CCceeEEeccccccchhHHHHHHH Q lcl|Aclame:pro 404 TPTGLNASSEGEIRV-WYD--YVRAYQRNALQQLMNDVIVMIQLSL--FGA---V-DPSIKWQWNALRELDDLEVAESRY 474 (695) Q Consensus 404 sp~Glnatge~D~~n-yyd--~i~~~Qe~~l~p~l~~l~~~l~~s~--~g~---~-~~d~~~~f~pL~~~se~e~Aei~~ 474 (695) +| |.||+. ++. |.. .-.+.++..++..|++++.+++.-. .+. . ..++.+.|+|....+..+.+++.. T Consensus 358 --~~-n~Sg~A-l~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v~f~~~~p~n~~e~ad~~~ 433 (501) T protein:vir:27 358 --SG-NTSGEA-LKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILT 433 (501) T ss_pred --cc-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHH Confidence 22 456663 432 222 2234466778999999988876421 121 1 125789999999999888887655 Q ss_pred HHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchh Q lcl|Aclame:pro 475 KQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPP 554 (695) Q Consensus 475 ~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (695) +.+ |.++...+...+....+ .. .................. ..................... T Consensus 434 kl~---------g~iS~et~l~~l~~v~D------~~-~E~eri~~E~~e~~~~~~---~~~~~~~~~~~~d~~~~~~~d 494 (501) T protein:vir:27 434 GLG---------GQVSQETALSLSGLVES------PN-EELDKINKEVSEIDFKGY---SNDFNEHVGKYTDEVKETHTD 494 (501) T ss_pred HHh---------ccCcHHHHHHhCCCCCC------HH-HHHHHHHHHHHhhhHhhh---cCccccccccccCCCCCCccc Confidence 532 45555554433321110 00 000000000000000000 000000000000000000000 Q ss_pred hhhhhhhcc Q lcl|Aclame:pro 555 TVANVNANV 563 (695) Q Consensus 555 ~~~~~~~~~ 563 (695) ....... T Consensus 495 --~~e~~~~ 501 (501) T protein:vir:27 495 --DFERAYE 501 (501) T ss_pred --cccccCC Confidence 0000000 No 187 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=97.55 E-value=4.6e-05 Score=44.35 Aligned_cols=449 Identities=10% Similarity=-0.023 Sum_probs=191.2 Q ss_pred CcchhhhhhhhhchhccccccChhhhHHHHHHHHHhcCCCCccc--chhhcccccccccccccccchhhhhhhcccccCC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPA--DMGRRGALNALDAAPVAEPSPSLRLARQFEVDVS 78 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (695) ++.|-.+++--.=......+......-.....|.+-. +.-.++ ...+... +. ++.+... T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~h~-~~~~~rl~~l~~yY~--g~----------------~~~i~~~ 77 (502) T protein:vir:48 17 LNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHK-LRQAPRIQELLDYAR--GE----------------NHDVLKS 77 (502) T ss_pred hhcccChhHHhhhcccchhhhccccHHHHHHHHHHHH-HHHHHHHHHHHHHhc--CC----------------Ccccccc Confidence 3222222222111111111111111100111111100 000000 0000000 00 0000000 Q ss_pred CCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccc Q lcl|Aclame:pro 79 NYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAA 158 (695) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~ 158 (695) ... .... .+.++. .+.+.+.||+..+.=++-+.+.++... T Consensus 78 ~~~----~~~~-----~~~~ki--------------------~~n~~k~Ivd~~~~yl~g~p~~~~~~d----------- 117 (502) T protein:vir:48 78 GRR----KDNE-----MADKRA--------------------VHNYGRMISKFKTGYLAGNPIRVEYDD----------- 117 (502) T ss_pred ccc----cccc-----ccccee--------------------ecchHHHHHHHHhhhhcccCeeEecCC----------- Confidence 000 0000 001111 124557778777766666666654211 Q ss_pred cccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecch Q lcl|Aclame:pro 159 GGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPY 238 (695) Q Consensus 159 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~ 238 (695) .+.+....+.|.+.+++-++...+.++.+..-.||.+++++.++.++.. .+.+++|. T Consensus 118 -----~~~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~------------------~i~~~~p~ 174 (502) T protein:vir:48 118 -----NEDNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDET------------------RIKRLSPL 174 (502) T ss_pred -----ccchhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCce------------------EEEEEccc Confidence 1223344556777777788999999999999999999998887554321 13444444 Q ss_pred hccccceecccccc--cccCCceeEEEc----c---eEEc-hhhEEEecCC--------------cchhhhhcccCCCCc Q lcl|Aclame:pro 239 WVTPNNYNSINPVA--DDFYKPSTWWMI----G---TEVH-ATRLHTIVSR--------------PVGDMLKPTYSFAGI 294 (695) Q Consensus 239 ~i~p~~~~~~dp~s--~~yg~P~~y~i~----~---~~iH-~SRli~~~~~--------------~~p~~~~~~~~~~G~ 294 (695) ++.|..- |+.. +.++- .+|.+. + ..|| ..+++.|.+. .+|-. .-.++..|. T Consensus 175 ~~~~vyd---d~~~~~~~~~i-r~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv-~~~nn~~g~ 249 (502) T protein:vir:48 175 ETFVIYD---NSLEDNSIAAV-RYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPIT-EFLNNADGI 249 (502) T ss_pred ceEEEEc---CCCCCceEEEE-EEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceE-EecCCCCCC Confidence 4444211 1110 11100 011110 0 0111 1122222211 11111 112356799 Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCcee--EEEe Q lcl|Aclame:pro 295 SMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEF--FQFN 372 (695) Q Consensus 295 S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~--~~~~ 372 (695) |.++.+.+.+.+++.+....+.-+..++...+.+.+......+....-.+...++... ....... ...+-++ -+.+ T Consensus 250 sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~d~~~l~~~ 327 (502) T protein:vir:48 250 GDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPQGMQASDMKRTRLMQLK-PPKSADG-KEGTVKAEYLTKS 327 (502) T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCcccccccchhhhhhcceeecc-ccccccc-cccCcceeEeeec Confidence 9999999999999999999998888888777766543222111111111111111110 0000000 0112233 3445 Q ss_pred cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHH-H--HHHHhhhhhHHHHHHHHHHHHHh--c Q lcl|Aclame:pro 373 TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDY-V--RAYQRNALQQLMNDVIVMIQLSL--F 447 (695) Q Consensus 373 ~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~-i--~~~Qe~~l~p~l~~l~~~l~~s~--~ 447 (695) .+..+....++...+.|...+++|-.-+-+. +| |.||+ .++.=+.. . ...++..++..|++++.+++.-. . T Consensus 328 ~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~--~~-n~Sg~-Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 403 (502) T protein:vir:48 328 YDVSGAEAYKTRLNKDIHVFTNTPDMSDNHF--SG-NASGE-ALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLV 403 (502) T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCcCcccc--cc-CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 6667899999999999999999996544221 22 45677 34322222 1 23355778999999988876432 1 Q ss_pred CCC----CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 448 GAV----DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDD 523 (695) Q Consensus 448 g~~----~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (695) +.. ..++.+.|+|....+.++.+++..+. .|.++...+...+....+ .. .+......... T Consensus 404 ~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl---------~g~iS~et~l~~l~~v~D------~~-~E~~ri~~E~~ 467 (502) T protein:vir:48 404 NEFKDFDESRLKITFTPNLPKSLYEQVSILNDL---------GGQVSQETALSLSGLVEN------PT-EELDKINEESS 467 (502) T ss_pred ccccccccccceEEeCCCCCcCHHHHHHHHHHH---------hccCcHHHHHHhCCCCCC------HH-HHHHHHHHHHH Confidence 221 12578999999999998887765543 245665555444321110 00 00000000000 Q ss_pred hhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhcc Q lcl|Aclame:pro 524 IDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANV 563 (695) Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (695) .......... ........ .... ............. T Consensus 468 ~~~~~~~~~~---~~~~~~~~-~d~~-~e~~~~~~~~~~~ 502 (502) T protein:vir:48 468 KIDFKGYPSY---FYDNVGKY-TDEV-KETHTDDFERVYE 502 (502) T ss_pred hhhhhccccc---cccccccc-CCCc-cCCCCcCcCCCCC Confidence 0000000000 00000000 0000 0000000000000 No 188 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=97.54 E-value=4.9e-05 Score=44.24 Aligned_cols=437 Identities=10% Similarity=0.016 Sum_probs=172.2 Q ss_pred HHHHHHHhcCCCCcccchhhcccccc-cccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhcc Q lcl|Aclame:pro 29 AAATIATATAAQPVPADMGRRGALNA-LDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTS 107 (695) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (695) |++.|-+....=- ..|.-++.... .+.+-...++. . ...+ .....||.+ T Consensus 1 m~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~-~-------------------~~~i--------~~~~~~Y~g 50 (499) T protein:vir:80 1 MINQIIAGVKGVM--RRMGLLKSLKDVTDHKKVNANDE-D-------------------YKYI--------DMWKRLYQG 50 (499) T ss_pred ChhHHHHHHHHHH--HHhccccchhhhhcCCCCcCCHH-H-------------------HHHH--------HHHHHHhcC Confidence 3333322100000 00110100000 00000000000 0 0000 000011211 Q ss_pred CCC---------CchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHH Q lcl|Aclame:pro 108 SGF---------PGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEI 178 (695) Q Consensus 108 ~~f---------~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 178 (695) ..- .|.+.-...-...+.+.||+..|.=++-+-..|. ..++...+.|...+ T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~s~n~~~~iv~~~a~~l~~ep~~i~--------------------~~d~~~~e~l~~~~ 110 (499) T protein:vir:80 51 NYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKIN--------------------IDDETAEEFVLNVL 110 (499) T ss_pred CcchhhccccccCCCccccceeecchHHHHHHHHHHhhhCCcceEe--------------------eCCHHHHHHHHHHH Confidence 100 0000000011124555555555543332222221 12345566677778 Q ss_pred HhhchHHHHHHHHHhcCccceEEEEEEEcCCCch---hccccCCccccccCcceEEEEEecchhccccceeccccccccc Q lcl|Aclame:pro 179 ERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQI---MDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDF 255 (695) Q Consensus 179 ~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~---~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~y 255 (695) +.-+++..+.+++..+-.+|++++.+.++.++.- .-.|...=|..-..|.+..+..+.++......+... ...... T Consensus 111 ~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~y~~l-E~h~~~ 189 (499) T protein:vir:80 111 KTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCMYPLSNDSENVDECLIANSFHKNNKYYKLL-EWNEWK 189 (499) T ss_pred hhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEEEEEEcCCceEEEEecCCCeEEEEEEEEEeecCeEEEEE-EEEEec Confidence 7778999999999999999999999888654321 111110000000112222222222111110000000 000000 Q ss_pred C-CceeEEEc------------ceEE----------------chhhE-EEecCCcchhhhhcccCCCCchHHHHHHHHHH Q lcl|Aclame:pro 256 Y-KPSTWWMI------------GTEV----------------HATRL-HTIVSRPVGDMLKPTYSFAGISMTQLAMPYID 305 (695) Q Consensus 256 g-~P~~y~i~------------~~~i----------------H~SRl-i~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~ 305 (695) + +-..|.|. |..| +-+|. +.+--.+.++. +......|+|++..+.+.+. T Consensus 190 ~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~~~~~~~p~f~~~~~~~~N~-~~~~splG~S~~~~~~~lid 268 (499) T protein:vir:80 190 GEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVPLPSLTRPTFIYIKPNIANN-KNLTSPLGISVYANALDTLK 268 (499) T ss_pred ccceeeEEEEEEEEeccCccccCcccchhhhccCcCCceeecCCCccceEeecCCcccc-ccCCCccCCchHhhHHHHHH Confidence 0 00012221 1111 01221 11111111111 01123469999999999999 Q ss_pred HHHHHhHHHHHHHHHhccceeee-chHHhhcchHHHHHHHHHHHHHHhcCCcee-EEEEcC----CceeEEEeccc--CC Q lcl|Aclame:pro 306 NWLRTRQSVSDIVKQFSVSGILM-DLAQALMPGANVDLSMRAELINRYRDNRNI-LFLDKA----TEEFFQFNTPL--SG 377 (695) Q Consensus 306 ~~~~~~~~~~~l~~~~~~~v~k~-~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~-~~ld~~----~e~~~~~~~~l--sg 377 (695) .++.+......-+......++-- .++....+...... .. ...+... .++++. ...++.++..+ .. T Consensus 269 ~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~g~~~----~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~ 341 (499) T protein:vir:80 269 TLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGSTT----QY---FDSTDEAFFLYQGEQDDNGKAIKDISVEIRSTE 341 (499) T ss_pred HHHHHHHHHHHHHHhcccceecchhhhhccCCCCCCcc----cC---CCcccceeeEeeccCCCCcCceeEecCcCChHH Confidence 99999988877665544444321 23322211111100 01 1111111 111111 12366666554 35 Q ss_pred hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--h----cC Q lcl|Aclame:pro 378 LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEG---EIRVWYDYVRAYQRNALQQLMNDVIVMIQLS--L----FG 448 (695) Q Consensus 378 l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~---D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s--~----~g 448 (695) ..+.++.+.+.+...+|++... ||...+|. .|+.. ....-|.++..+ +..++..|++++..++.- . .| T Consensus 342 ~~~~l~~~l~~i~~~~g~s~~~-fg~~~~g~-~TAtei~s~~~~l~~~~~~~-~~~~~~~l~~l~~~il~~~~~~~~~~~ 418 (499) T protein:vir:80 342 FIESINAMLRIYAMQVGLSAGT-FTFDENGL-KTATEVVSEKSETYQTKNSH-SQLIEQGIKEMIVSILEVGKLIKAYDG 418 (499) T ss_pred HHHHHHHHHHHHHHhcCCChhh-cCCCcccc-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccC Confidence 6677888888999999999776 46555665 34442 222334455554 455788888887776531 1 12 Q ss_pred CC--CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 449 AV--DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDG 526 (695) Q Consensus 449 ~~--~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (695) .. +.++++.|++--..++.+.++. ..+++.+|.++........- +... ................ T Consensus 419 ~~~~~~~v~v~f~d~i~~d~~~~~~~-------~~~~~~~Gi~S~et~l~~~~-----~~~d-~ea~~el~~i~~E~~~- 484 (499) T protein:vir:80 419 DTVELDTITVDFDDSIAQDEDTTINR-------YTTAKNQGMIPLKIALQRAW-----NITE-AEADEWAEMLAKEKQA- 484 (499) T ss_pred CCCCccceEEEeCCCCCCCHHHHHHH-------HHHHHHcCCCCHHHHHhhcC-----CCCh-HHHHHHHHHHHHHhhc- Confidence 22 3479999999888877665443 33344455555444321110 0000 0000000000000000 Q ss_pred hhhhhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 527 VLTYVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) .......+... .... T Consensus 485 -~~~~~d~~g~~-----------ge~e 499 (499) T protein:vir:80 485 -EIPNNDMTGIF-----------GEEE 499 (499) T ss_pred -CCCCCCccccC-----------CCCC Confidence 00000000000 0000 No 189 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=97.52 E-value=5.2e-05 Score=44.05 Aligned_cols=447 Identities=10% Similarity=-0.006 Sum_probs=187.5 Q ss_pred Ccchhhhhhhhhchhcccccc--ChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCC Q lcl|Aclame:pro 1 MSRRNAKKRTQLAHTGRRPEV--AKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVS 78 (695) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (695) -++|-.|.+-..=......+. .-...+. ..|.+- .....+ .+.+.... ... +++.+... T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~i~~~-~~~~~~-r~~~~~~y--Y~g-------------~~~~i~~~ 76 (501) T protein:vir:96 16 LNLRFHRESRIRYRADNLEELMVNNWELLK--NFINHH-KLRQAP-RIQELLDY--ARG-------------ENHDVLKS 76 (501) T ss_pred cccccchhHHhhhcccccccccCChHHHHH--HHHHHH-HHHHHH-HHHHHHHH--hcC-------------CCCcccCc Confidence 111111111100000111111 1111111 011100 000000 00000000 000 00000000 Q ss_pred CCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccc Q lcl|Aclame:pro 79 NYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAA 158 (695) Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~ 158 (695) ...+ ... .+.++. .+...+.||+..+.=++-+.+++.... T Consensus 77 ~~~~----~~~-----~~~~ri--------------------~~n~~k~Ivd~~~~yl~g~p~~~~~~~----------- 116 (501) T protein:vir:96 77 GRRK----DNE-----MADKRA--------------------VHNYGRMISKFKTGYLAGNPIRVEYDD----------- 116 (501) T ss_pred cccC----ccc-----ccccee--------------------ecchHHHHHHHHhhhhcccCeeEeeCC----------- Confidence 0000 000 001111 123456777777665665555553211 Q ss_pred cccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecch Q lcl|Aclame:pro 159 GGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPY 238 (695) Q Consensus 159 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~ 238 (695) .+.+....+.|.+.+++-++...+.++.+.+-.||.+++++..+.++.. .+.+++|. T Consensus 117 -----~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~------------------~i~~~~p~ 173 (501) T protein:vir:96 117 -----NDDNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDET------------------RIKRLSPL 173 (501) T ss_pred -----ccchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCce------------------EEEEEccc Confidence 1223344556777788888999999999999999999999887554321 13445555 Q ss_pred hccccceecccccccccCCceeEEEcc-------eEE-chhhEEEecCC--------------cchhhhhcccCCCCchH Q lcl|Aclame:pro 239 WVTPNNYNSINPVADDFYKPSTWWMIG-------TEV-HATRLHTIVSR--------------PVGDMLKPTYSFAGISM 296 (695) Q Consensus 239 ~i~p~~~~~~dp~s~~yg~P~~y~i~~-------~~i-H~SRli~~~~~--------------~~p~~~~~~~~~~G~S~ 296 (695) ++.|..-+. ....+.++- .+|.+.. ..| ...++.+|... .+|-. .-.++-+|.|. T Consensus 174 ~~~~v~d~~-~~~~~~~~v-~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv-~~~nn~~g~sd 250 (501) T protein:vir:96 174 ETFVIYDNS-LEDNSIAAV-RYYNRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPIT-EYLNNIDGIGD 250 (501) T ss_pred eeEEEEcCC-CCCceEEEE-EEEEeecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceE-EecCCccCCCc Confidence 554431110 001111110 1111100 011 12233333211 01111 11235679999 Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCce--eEEEecc Q lcl|Aclame:pro 297 TQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEE--FFQFNTP 374 (695) Q Consensus 297 l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~--~~~~~~~ 374 (695) ++.+.+.+.+++.+....+.-+..++...+.+.+......+....-.+....+.. ... +..-.+..+-+ |-+.+.+ T Consensus 251 ~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~~ 328 (501) T protein:vir:96 251 YETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQASDMKRTRLMQL-KPP-KSADGKEGTVKAEYLTKSYD 328 (501) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCcccchhhhhhcCeeee-ccc-ccccccccCcceeeEeccCC Confidence 9999999999999999988888777777766554322111111000111111110 000 00000111223 3344566 Q ss_pred cCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHH--hcCC Q lcl|Aclame:pro 375 LSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDY---VRAYQRNALQQLMNDVIVMIQLS--LFGA 449 (695) Q Consensus 375 lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd~---i~~~Qe~~l~p~l~~l~~~l~~s--~~g~ 449 (695) .+++...++...+.|...+++|-.-+-+. +| |.||+. ++.=+.. -...++..++..|++++.+++.- ..+. T Consensus 329 ~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~~-n~Sg~A-l~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~ 404 (501) T protein:vir:96 329 VSGAEAYKTRLNRDIHIFTNTPDMSDTNF--SG-NTSGEA-LKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNE 404 (501) T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCcccc--cc-cchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 78999999999999999999996554322 12 456663 4322222 12345677889999888876532 1111 Q ss_pred ---C-CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 450 ---V-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDID 525 (695) Q Consensus 450 ---~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (695) . ..++.+.|+|....+.++.++...+.+ |.++...+...+....+ ... ............ T Consensus 405 ~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl~---------g~iS~et~~~~l~~v~D------~~~-E~~ri~~E~~~~ 468 (501) T protein:vir:96 405 FKDFDESLLKITFTPNLPKSLNEQVSILTGLG---------GQVSQETALSLSGLVES------PNE-ELDKINKEMSEI 468 (501) T ss_pred ccccccccceEEeCCCCCcCHHHHHHHHHHHh---------ccCchHHHHHhCCCCCC------HHH-HHHHHHHHHHHh Confidence 1 125789999999999888877655443 45655554444321110 000 000000000000 Q ss_pred h----hhhhhhhhhhhcccccccccCCCccchhhhhhhhhcc Q lcl|Aclame:pro 526 G----VLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANV 563 (695) Q Consensus 526 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (695) . ........+...... .......... ... T Consensus 469 ~~~~~~~~~~~~~~~~~~~~----~e~~~d~~e~-----~~~ 501 (501) T protein:vir:96 469 DFKGYSNDFNEHVGKYTDEV----KETHTDDFER-----EYE 501 (501) T ss_pred hccccccchhhcccccCCcC----CCCCCCcccc-----ccC Confidence 0 000000000000000 0000000000 000 No 190 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=97.51 E-value=5.3e-05 Score=44.02 Aligned_cols=207 Identities=9% Similarity=0.015 Sum_probs=108.6 Q ss_pred cccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHH Q lcl|Aclame:pro 221 PYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLA 300 (695) Q Consensus 221 ~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~ 300 (695) ...-+.|.+.+..... ..+ ..|+ .+.++++.|++|.+.. +...+.|.|-++.+ T Consensus 1 ~r~~~dg~~~y~~~~~----------~~~----~~g~-------~~~~~~~eilH~r~~~------~~~~~~Glspi~~a 53 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKS----------LYD----TKSE-------IYEYNKNDVIFIKLYD------PMQQVYGSPDYVGG 53 (219) T ss_pred CceeecCeEEEEEecc----------eec----CCce-------eEEeccccEEEecCCC------CCCCcceecHHHHH Confidence 1111223332221000 000 0111 2457888899988743 22345799998888 Q ss_pred HHHHHHHHHHhHHHHHHHHH-hccc-eeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEE-c----CCceeEEEec Q lcl|Aclame:pro 301 MPYIDNWLRTRQSVSDIVKQ-FSVS-GILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLD-K----ATEEFFQFNT 373 (695) Q Consensus 301 ~~~l~~~~~~~~~~~~l~~~-~~~~-v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld-~----~~e~~~~~~~ 373 (695) ...+..-..+..-...+... +... |+++.. ..|+.+..+.+.+.++.. ...+|.+.+++. . ++-+|+.++. T Consensus 54 ~~~i~~~~aa~~~~~~~f~Ng~~p~gil~~~~-~~l~~e~~~~~~~~~~~~-~g~~n~~~~~l~~~gg~~~G~~~~~~~~ 131 (219) T protein:vir:98 54 ITSALLNSDATIFRRRYYSNGAHMGFILYSTD-PDMTEEMEDEIAERIRDS-KGVGNFRSMFVNIAGGHPDGLKVIPIGD 131 (219) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEeCC-CCCCHHHHHHHHHHHHHh-cCcccccceeEecCCCCccceeEEEccC Confidence 77776544443333333322 2222 233332 245655556666666553 344554554542 1 1235666665 Q ss_pred ccC--ChHHHHHHHHHHHHhhhcCCceeeeccC---cccccCcchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 374 PLS--GLDALQAQAQEQMSAVSHIPLIKLLGIT---PTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFG 448 (695) Q Consensus 374 ~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~s---p~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~~g 448 (695) +.. .+-+......+.||.+-++|-.+| |.. .++. ++-|.-...|| +..|.|.+.++-+.|-. .+ T Consensus 132 ~~~d~qfle~rk~~~~eIa~~fgVPp~~l-G~~~~~~~~~-sn~eq~~~~f~-------~~tL~P~~~~ie~~ln~-~~- 200 (219) T protein:vir:98 132 TGQKDEFANIKNISAQDVLTSHRFPPGLS-GIIPVNTAGL-GDPLKIREAYQ-------ADEVLPLQEIIAESINS-DY- 200 (219) T ss_pred CHHHHHHHHHHHhhHHHHHHHhCCCHHHc-ccccCCCCCc-cCHHHHHHHHH-------HHHHHHHHHHHHHHhhh-hh- Confidence 543 344455555788999999999976 643 2333 33343445554 34578888887776643 22 Q ss_pred CCCCceeEEeccccccchhH Q lcl|Aclame:pro 449 AVDPSIKWQWNALRELDDLE 468 (695) Q Consensus 449 ~~~~d~~~~f~pL~~~se~e 468 (695) .+|++..+.|+.- .++++. T Consensus 201 ~~~~~~~~~F~~~-~~~d~~ 219 (219) T protein:vir:98 201 EIKSALKVNFKQP-EKRDKN 219 (219) T ss_pred cCCCccEEeecCc-ccccCC Confidence 4577778888643 333333 No 191 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=97.40 E-value=7.5e-05 Score=43.19 Aligned_cols=321 Identities=11% Similarity=0.000 Sum_probs=139.1 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhh-hhhhccCCCCchHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDA-LSFVTSSGFPGFPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~gy~~~a~~~~~~~ 124 (695) |++|...... ..+.++...=+|..|+..+. +..- .++...-.+. -+||. ..+.=..+..+++.++- T Consensus 1 m~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~-------~~~~--~~~~~~~~~~~~~~~~-pP~~~~~La~l~~~~~~ 67 (337) T protein:vir:78 1 MTKRQQQPAQ---AAASSPRPSVVFSMPEAIDP-------TAWM--TDYTGVFYNPYGEYYQ-PPIDRKGLAKVARANAH 67 (337) T ss_pred CCCcccCccc---ccccCceeEEEecCcccccC-------cchh--HhhhhhhhccCcceec-CCCCHHHHHHHhhcchh Confidence 5544432111 11111111112222221111 1100 0010000000 12322 11111122333444444 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEE Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYF 204 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i 204 (695) ...++..-+...+ .+.. +. ++.+..++..--+||-+++++ T Consensus 68 h~~~L~~k~N~~~-~~f~-------------------------~~--------------~~~~~~~~~d~ll~GNay~~~ 107 (337) T protein:vir:78 68 HGAILMARRNMVA-GRFT-------------------------NQ--------------RATITAFVHNYLQFGDGGLLK 107 (337) T ss_pred hhhHHHhhhcccc-ccCc-------------------------Cc--------------HHHHHHHHHHHHhhCCeEEEE Confidence 3433332221100 0110 00 011222222223689888876 Q ss_pred EEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcc---eEEchhhEEEecCCcc Q lcl|Aclame:pro 205 KIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG---TEVHATRLHTIVSRPV 281 (695) Q Consensus 205 ~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~---~~iH~SRli~~~~~~~ 281 (695) .-++ .|.+.+|.++++..+... .| . +| +|...+ +.+-+..||++.+... T Consensus 108 ~rn~-----------------~G~~~~L~pl~~~~v~~~----~d--~-~~----~~~~~~~~~~~~~~~eIiHik~~~~ 159 (337) T protein:vir:78 108 LRNS-----------------FGQVVGLHPLSSVYLRRR----ED--G-CF----VYLQQGKPNLIYRPDDVIWLAQYDP 159 (337) T ss_pred EECC-----------------CCcEEEEEEeCCceeEee----eC--C-eE----EEEEcCCceEEECCccEEEECCCCC Confidence 5432 234556777776655432 11 0 11 222222 3455677888775432 Q ss_pred hhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHH-hcccee-eechHHhhcchHHHHHHHHHHHHHHhcCCceeE Q lcl|Aclame:pro 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ-FSVSGI-LMDLAQALMPGANVDLSMRAELINRYRDNRNIL 359 (695) Q Consensus 282 p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~-~~~~v~-k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~ 359 (695) .....|.|-++.+...+.--..+..-....... ++...+ .+.. ..++.+..+.+.+.++... ..+|.+.+ T Consensus 160 ------~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~-~~l~~e~~~~lk~~~~~~~-G~~n~~~~ 231 (337) T protein:vir:78 160 ------EQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATD-PNMDDDTEEEMKEMIANSK-GVGNFRSM 231 (337) T ss_pred ------CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCC-CCCCHHHHHHHHHHHHHhc-Ccccccce Confidence 234579999988888877655555554554333 233322 2221 2355555666776666532 34455554 Q ss_pred EEE-cC--CceeEEEecccCC----hHHHHHHHHHHHHhhhcCCceeeeccCcccccC---cchHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 360 FLD-KA--TEEFFQFNTPLSG----LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNA---SSEGEIRVWYDYVRAYQRN 429 (695) Q Consensus 360 ~ld-~~--~e~~~~~~~~lsg----l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glna---tge~D~~nyyd~i~~~Qe~ 429 (695) ++- .+ ++.++....+.+. +-++-....++||++-+||-.+| |..+.+-.+ +-|...+.|+ +. T Consensus 232 ~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~ll-Gi~~~~~~~~~~n~e~~~~~f~-------~~ 303 (337) T protein:vir:78 232 FVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALA-GIIPTNGGGGLGDPEKYDATYA-------RN 303 (337) T ss_pred EEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHc-ccccCCCcCccccHHHHHHHHH-------HH Confidence 442 11 2334444444333 33445556778999999999766 654433222 2343444554 34 Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCceeEEecccccc Q lcl|Aclame:pro 430 ALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALREL 464 (695) Q Consensus 430 ~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~ 464 (695) .|.|.++++-+.+-+..+. ...-+.|+++.=..+ T Consensus 304 ~L~P~~~~ie~~~n~~ll~-~~~~~~f~~~~~~~~ 337 (337) T protein:vir:78 304 EVLPLCELVQDAINSAGLP-RALWVTFRETIGAAV 337 (337) T ss_pred HHHHHHHHHHHHHhhhcCC-hhhceeccccccccC Confidence 5788888877766443221 111233444433333 No 192 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=97.36 E-value=8.5e-05 Score=42.89 Aligned_cols=390 Identities=11% Similarity=0.052 Sum_probs=171.9 Q ss_pred ccccccchhhhhh----hcc--C-CCCchHHHHHHH--hChhhhhHhh-------cchHHHhhCCcee--------eccc Q lcl|Aclame:pro 92 LDFNGTSMDALSF----VTS--S-GFPGFPTLVLLA--QLPEYRAMHE-------VLADECIRTWGEA--------IGGT 147 (695) Q Consensus 92 ~~~~~~~~~~~~~----~~~--~-~f~gy~~~a~~~--~~~~~r~~v~-------~~a~d~tR~~~~i--------~~~~ 147 (695) |. ...+.. ... . -..-|..+..|+ .|-+..+-.. .-.++..+.-.+| ++.. T Consensus 1 ~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~ 75 (470) T protein:vir:10 1 ME-----LDALKKLIQNTSTSRNDLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQE 75 (470) T ss_pred Cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccchhcccccccccccccCCcccccchHHHHHHhh Confidence 11 111100 000 0 001122222221 1211111000 0000111111111 1111 Q ss_pred hhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCc Q lcl|Aclame:pro 148 KEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKG 227 (695) Q Consensus 148 ~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g 227 (695) ..=.+.++.++. . .+.+..+.|...+++ +....+.++.+.+-.||.++.++.++.++. T Consensus 76 ~~yl~G~p~~~~----~-~d~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~---------------- 133 (470) T protein:vir:10 76 AGYVASVFPDID----V-GKDADNKKIIDVLGD-DRALTLNGLLVDSSNAGRAWLHYWIDEDGN---------------- 133 (470) T ss_pred hhheeccceeee----c-CchHHHHHHHHHHhh-hHHHHHHHHHHHHhhcCeeEEEEEecCCCc---------------- Confidence 111122222221 1 223444556666653 566777888888888999999988865432 Q ss_pred ceEEEEEecchhccccceecccccccccCCceeEEEc---------ceEEch-hhEEEecC------------------- Q lcl|Aclame:pro 228 SFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---------GTEVHA-TRLHTIVS------------------- 278 (695) Q Consensus 228 ~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~---------~~~iH~-SRli~~~~------------------- 278 (695) + .+.+++|.++.|..-+. +...+.+. -.+|... -..+|- .++..|.. T Consensus 134 -~-~~~~~~p~~~~~v~d~~-~~~~~~a~-ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (470) T protein:vir:10 134 -F-RYGIIQPDQITPIYATT-LDNKLLGI-LRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDL 209 (470) T ss_pred -e-EEEEEcccceEEEEcCC-CCCceEEE-EEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceecccccccccccc Confidence 1 13334444433321100 00000000 0001000 000100 01111100 Q ss_pred ----------------CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHH Q lcl|Aclame:pro 279 ----------------RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDL 342 (695) Q Consensus 279 ----------------~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l 342 (695) ..+|-.. -.++-.|.|.++.+.+.+.+++.+....+.-+..++...+.+.+...- . ..+. T Consensus 210 ~~~~~~~~~~~~~~~~g~vPvv~-~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~-~--~~~~ 285 (470) T protein:vir:10 210 SAGYETGQSNTLKHNFGRVPFIE-FSKNKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGA-D--LHQF 285 (470) T ss_pred ccccccccccccccCCCeeeEEE-eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCcc-c--cchh Confidence 0011110 012446899999999999999999999999888888777776543211 1 0111 Q ss_pred HHHHHHHHHhcCCceeEEEEc------CCceeEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHH Q lcl|Aclame:pro 343 SMRAELINRYRDNRNILFLDK------ATEEFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEI 416 (695) Q Consensus 343 ~~r~~~~~~~~~n~~~~~ld~------~~e~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~ 416 (695) .. .++.+ +++.++. .+-++-+.+.+..+....++...+.|...+.+|-.-..+ .| |+||. .+ T Consensus 286 ~~------~~~~~-~~i~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~---~g-n~Sg~-Al 353 (470) T protein:vir:10 286 MN------DLRKY-KSIKINNTGNGDNSGVDKLQIDIPVEARDDALKITRKNIFLFGQGIDPANFE---SS-NASGV-AI 353 (470) T ss_pred hh------hhhhc-CeEeccCCCCCcCceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCCCCccc---cc-cchHH-HH Confidence 11 12222 2233321 112355556777889999999999999999999643322 24 56777 44 Q ss_pred HH-HHHHH--HHHHhhhhhHHHHHHHHHHHHHhc-CCC-CCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchh Q lcl|Aclame:pro 417 RV-WYDYV--RAYQRNALQQLMNDVIVMIQLSLF-GAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRP 491 (695) Q Consensus 417 ~n-yyd~i--~~~Qe~~l~p~l~~l~~~l~~s~~-g~~-~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~ 491 (695) +. |.... .+..+..+++.|++++.++..-.. +.. ..++.+.|++....++.+.+++..+. .|.++. T Consensus 354 k~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~~~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~---------~g~iS~ 424 (470) T protein:vir:10 354 KMLYSHLELKAAKTQTYFEHAINELVRAIMRYLNFSDADKRHISQHWTRTKVEDSLTKAQIVSTV---------ANYSSK 424 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccceeeEEeccCCCCCHHHHHHHHHHH---------hccCcH Confidence 43 33333 344677789999999988864321 122 24789999999999999998776553 356666 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 492 DQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 492 ~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) ..+...+....+. ..+....... .... ..... ........ ...... T Consensus 425 et~l~~~p~v~D~-------~~E~eri~~E-~~e~-~~~~~------~~~~~~~~-~~dde~ 470 (470) T protein:vir:10 425 EAVAKANPIVDDW-------QQELKDLAKD-KEEN-DPYSN------QADELNGK-GVNDEQ 470 (470) T ss_pred HHHHHhCCCCCCH-------HHHHHHHHHH-HHHH-HHhhc------cccccCCC-CCCCCC Confidence 6554443221110 0000000000 0000 00000 00000000 000000 No 193 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=97.21 E-value=0.00013 Score=41.88 Aligned_cols=427 Identities=7% Similarity=-0.019 Sum_probs=166.4 Q ss_pred ccccchhhhhhhcccccCCCCccccccc---ccccccccccch--hhhhhhccCCCCchHHHHHHHh---------Chhh Q lcl|Aclame:pro 60 VAEPSPSLRLARQFEVDVSNYTPRERRA---ASYALDFNGTSM--DALSFVTSSGFPGFPTLVLLAQ---------LPEY 125 (695) Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~f~gy~~~a~~~~---------~~~~ 125 (695) -+ ---...++++..+++.. ...... -.+........+ ....+|.+..-+-+........ ..+. T Consensus 1 m~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~ 77 (496) T protein:vir:38 1 MI--NQIIAGVKGVMRRMGLL-KALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLP 77 (496) T ss_pred Ch--hHHHHHHHHHHHHhccc-hhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccccceeecchH Confidence 00 00011112222222110 000000 000000000000 0111222110000000000000 1222 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFK 205 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~ 205 (695) +.||+..|.= .+....++. ..++...+.|.+.++.-+++..+.+++..+-.+|++++.+- T Consensus 78 k~i~~~~a~~---------------l~~~p~~i~-----~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~ 137 (496) T protein:vir:38 78 KVTAKYMSKL---------------LFNEKVKIN-----IDDKAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVY 137 (496) T ss_pred HHHHHHHhhh---------------hhCCcceEe-----eCChHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEE Confidence 2222222211 111111111 12445666778888888899999999999999999999988 Q ss_pred EcCCCchhcc--------ccCCccccccCcceEEEEEecchhccccc--------------------eecccccccccCC Q lcl|Aclame:pro 206 IKGDDQIMDT--------PLVPRPYTVPKGSFQGLRVVEPYWVTPNN--------------------YNSINPVADDFYK 257 (695) Q Consensus 206 ~~~d~~~~~~--------Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~--------------------~~~~dp~s~~yg~ 257 (695) ++.++...-. |+..+. +.+..+.-+..+...... |...+ +...|. T Consensus 138 ~D~~~~~~i~~v~~~~~~P~~~~~-----~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~--~~~~g~ 210 (496) T protein:vir:38 138 HDGNKNVKVSFATADCMYPLSNDS-----ENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDD--PNELGT 210 (496) T ss_pred EcCCCcEEEEEEcccceEEEEecC-----CcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCC--ccccCc Confidence 8654321111 221111 122222111111111000 00000 011111 Q ss_pred ceeEE-----Ec--ceEEchhhE-EEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeee- Q lcl|Aclame:pro 258 PSTWW-----MI--GTEVHATRL-HTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILM- 328 (695) Q Consensus 258 P~~y~-----i~--~~~iH~SRl-i~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~- 328 (695) |--+. +. +..-+-+|+ +.+...+.++. .......|.|++..+.+.+..++.+......-+....-.++-- T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~N~-~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~v~~ 289 (496) T protein:vir:38 211 KVSLTLLFDDIEPVVPLPDFTRPTFIYIKPNIANN-KNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPS 289 (496) T ss_pred cccccccccccccceeecCCCcceEEEecCCcccc-cccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccceecch Confidence 11000 00 000011232 11111122221 1123356999999999999999999877766554433333321 Q ss_pred chHHhhcchHHHHHHHHHHHHHHhcCCcee-EEEEcC----CceeEEEeccc--CChHHHHHHHHHHHHhhhcCCceeee Q lcl|Aclame:pro 329 DLAQALMPGANVDLSMRAELINRYRDNRNI-LFLDKA----TEEFFQFNTPL--SGLDALQAQAQEQMSAVSHIPLIKLL 401 (695) Q Consensus 329 ~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~-~~ld~~----~e~~~~~~~~l--sgl~~~~~~~~~~iaaas~iP~t~L~ 401 (695) .+...+.+.....+ .. ...+... .++.+. .+.++.++..+ ......++...+.++..+|+|-.. | T Consensus 290 ~~l~~~~~~~g~~~----~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~-f 361 (496) T protein:vir:38 290 SFVKTAVNLDGSTT----QY---FDSTDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGT-F 361 (496) T ss_pred HHhhccCCCCCccc----cC---CCCccceEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhh-c Confidence 12222211111110 01 1111111 122111 12466666554 346777888889999999999876 4 Q ss_pred ccCcccccCcchHHHHH---HHHHHHHHHhhhhhHHHHHHHHHHHHH-----h-cCCC--CCceeEEeccccccchhHHH Q lcl|Aclame:pro 402 GITPTGLNASSEGEIRV---WYDYVRAYQRNALQQLMNDVIVMIQLS-----L-FGAV--DPSIKWQWNALRELDDLEVA 470 (695) Q Consensus 402 G~sp~Glnatge~D~~n---yyd~i~~~Qe~~l~p~l~~l~~~l~~s-----~-~g~~--~~d~~~~f~pL~~~se~e~A 470 (695) |...+|. +|+..=... -+.++.. -++.++..|++++..++.- . .|.. +.++++.|+.....++.+.+ T Consensus 362 ~~~~~g~-~tAtei~~~~~~l~~~~~~-~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~ 439 (496) T protein:vir:38 362 TFDENGL-KTATEVVSEKSETYQTKNS-HSQLIEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTI 439 (496) T ss_pred CCCcccc-chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHH Confidence 6556675 444422223 3334444 3455788888877766522 1 1222 34689999988777776654 Q ss_pred HHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCc Q lcl|Aclame:pro 471 ESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGA 550 (695) Q Consensus 471 ei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (695) +... .++.+|+++...+....... ................... ......+...... T Consensus 440 ~~~~-------~~~~~GiiS~et~l~~~~~~-----~d~ea~~el~ri~~E~~~~---~~~~d~~~~~~~~--------- 495 (496) T protein:vir:38 440 NRYT-------NAKNQGMIPLKIALQRAWNI-----TEAEADEWAEMLAKEKQAE---MPNNDMNGIFGEE--------- 495 (496) T ss_pred HHHH-------HHHhcCCCCHHHHHHhcCCC-----ChHHHHHHHHHHHHhhhcc---CccccccCCCCCC--------- Confidence 4333 33345666655443221100 0000000000000000000 0000000000000 Q ss_pred cch Q lcl|Aclame:pro 551 TAP 553 (695) Q Consensus 551 ~~~ 553 (695) . T Consensus 496 --e 496 (496) T protein:vir:38 496 --E 496 (496) T ss_pred --C Confidence 0 No 194 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=97.09 E-value=0.00017 Score=41.21 Aligned_cols=441 Identities=9% Similarity=-0.008 Sum_probs=171.1 Q ss_pred ccccccchh--hhhh--------hccC-CCCchHHHHHHH--hChhhhhHh------hcchHHHhhCCcee--------e Q lcl|Aclame:pro 92 LDFNGTSMD--ALSF--------VTSS-GFPGFPTLVLLA--QLPEYRAMH------EVLADECIRTWGEA--------I 144 (695) Q Consensus 92 ~~~~~~~~~--~~~~--------~~~~-~f~gy~~~a~~~--~~~~~r~~v------~~~a~d~tR~~~~i--------~ 144 (695) |...-.++. .++. +..+ ...-|..+..|+ .|-+..+-. ....+|-++...+| + T Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Iv 80 (537) T protein:vir:78 1 MTSPLLNKPIDQLGGLLNTEITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFTELV 80 (537) T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccccccccccccccccccccccccchHHHHH Confidence 111001110 0000 0000 001111222222 122211100 00111111111112 2 Q ss_pred ccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccc Q lcl|Aclame:pro 145 GGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTV 224 (695) Q Consensus 145 ~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i 224 (695) +.-..=++.++.++.. ..+.+.+..+.+...++ -+....+.+..+..-.||.++.++.++.++.... T Consensus 81 d~~~~yl~G~Pv~~~~--~d~~~~e~~~~l~~~~~-~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~~---------- 147 (537) T protein:vir:78 81 DQLAQYLLSNGVEVKV--KDEDNTQLDEILQEYFD-EDFQATIDTLVTNASKKGFEGIFARTTSEGKLKF---------- 147 (537) T ss_pred HHHhhhhcccCceeec--CcchhHHHHHHHHHHhh-ccHHHHHHHHHHHHhhcCeeEEEeeecCCCceEE---------- Confidence 1111112222222221 22223334444443332 2455677777787888999999988866543211 Q ss_pred cCcceEEEEEecchhccccceeccccc----------------------ccccCCce---eEEEcc----------eEEc Q lcl|Aclame:pro 225 PKGSFQGLRVVEPYWVTPNNYNSINPV----------------------ADDFYKPS---TWWMIG----------TEVH 269 (695) Q Consensus 225 ~~g~l~~l~v~d~~~i~p~~~~~~dp~----------------------s~~yg~P~---~y~i~~----------~~iH 269 (695) .+++|.++-|..-+..+.. --+++.+. +|.-.+ ..+. T Consensus 148 --------~~i~p~~~~pv~d~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~ 219 (537) T protein:vir:78 148 --------QTVDGLTLIPVFDDYGVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYN 219 (537) T ss_pred --------EEEccceeEEEEcCCCCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCccccccccccccc Confidence 2222222222110000000 00000000 000000 0000 Q ss_pred hhhE---EEec------------C-------CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceee Q lcl|Aclame:pro 270 ATRL---HTIV------------S-------RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGIL 327 (695) Q Consensus 270 ~SRl---i~~~------------~-------~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k 327 (695) ...+ ..+. . ..+|-. .-.++-.|.|.++.+...+.+|+......+.-+..++..++. T Consensus 220 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv-~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilv 298 (537) T protein:vir:78 220 PNPAPHVLAIEESTDADFEDTDGYQVLGRSYSKFPFQ-LLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYV 298 (537) T ss_pred ccccceeeeccccccccccccccccccccCCcceeEE-EeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceee Confidence 0000 0000 0 001111 112345689999999999999999999999999888888777 Q ss_pred echHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcCCc--eeEEEecccCChHHHHHHHHHHHHhhhcCCceeeeccCc Q lcl|Aclame:pro 328 MDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATE--EFFQFNTPLSGLDALQAQAQEQMSAVSHIPLIKLLGITP 405 (695) Q Consensus 328 ~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e--~~~~~~~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp 405 (695) +.+... . ...+..+. ++. .+++.+++++. +|-+.+.+..+....++...+.|-..+..|-+ ..+- T Consensus 299 i~g~~~-~--~~~~~~~~------l~~-~~~i~v~~d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~s~~~~~---~~~~ 365 (537) T protein:vir:78 299 VKGFSG-D--STDKLRQN------IKA-KKMIGVNGDNAGMEIQTVSIPYEARKAKMDIDVENIYRSGMGFNS---TAVG 365 (537) T ss_pred eecCCC-c--cchhHHHH------Hhh-cCceeecCCCCceeEEEecCCHHHHHHHHHHHHHHHHHhcCCCCC---cccc Confidence 654321 1 11122111 222 23445554333 45555666678899999999988777766654 3222 Q ss_pred ccccCcchHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHH--hcCC--C-CCceeEEeccccccchhHHHHHHHHHH Q lcl|Aclame:pro 406 TGLNASSEGEIRVWYDYV---RAYQRNALQQLMNDVIVMIQLS--LFGA--V-DPSIKWQWNALRELDDLEVAESRYKQA 477 (695) Q Consensus 406 ~Glnatge~D~~nyyd~i---~~~Qe~~l~p~l~~l~~~l~~s--~~g~--~-~~d~~~~f~pL~~~se~e~Aei~~~~a 477 (695) .| |+||. .++.-|..+ ....+..++..|++++.+|+.. ..|. . ..++.+.|++-.-.++.|.+++..+ T Consensus 366 ~g-n~SGv-Alk~~~~~l~~ka~~ke~~f~~~l~~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~-- 441 (537) T protein:vir:78 366 DG-NVTNV-VIKSRYTLLAMKARKMETSLRKVLRWCADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATTRKT-- 441 (537) T ss_pred cc-CCcHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHHHHH-- Confidence 23 46665 554333332 3446677899999988887643 2222 1 2468899999988888888665543 Q ss_pred HhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccC-CCc-cchhh Q lcl|Aclame:pro 478 QSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGAR-AGA-TAPPT 555 (695) Q Consensus 478 ~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~ 555 (695) +...|.++...+...+....+....... .+............... .................. ... ..... T Consensus 442 -----l~~~giiS~eT~l~~~p~vdd~e~ek~~-~ee~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (537) T protein:vir:78 442 -----EAETEALKIGNIMTVAPRIGDDETLKLI-AEELDLDYNELKDALAE-QDAQSLDVSPDVQAMLDGLPVNANQPPV 514 (537) T ss_pred -----HHhcCcchHHHHHHhCCCCCCHHHHHHH-HHHHHhhhhhhhhhhhh-hcccccCcCcchhhhcCCCCCCCCCCCC Confidence 3455566655554443221111000000 00000000000000000 000000000000000000 000 00000 Q ss_pred hhhhhhccccccccccCceEEEE Q lcl|Aclame:pro 556 VANVNANVKPREAGAQDAAMRAA 578 (695) Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~ 578 (695) ........+.......+...++. T Consensus 515 d~~~~~~~~~~~~~~~~~~~~~~ 537 (537) T protein:vir:78 515 DPNQPVADPNVVPPTDPNAVPQT 537 (537) T ss_pred CccCCCCCCCCCCCCCCccCCCC Confidence 00000000000000000000000 No 195 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=97.00 E-value=0.00022 Score=40.68 Aligned_cols=440 Identities=9% Similarity=-0.018 Sum_probs=166.2 Q ss_pred ccCCCCcccccccccccccccccchhh--hhhhccCCCCchHHHHH----HHh--ChhhhhHhh-----------cchHH Q lcl|Aclame:pro 75 VDVSNYTPRERRAASYALDFNGTSMDA--LSFVTSSGFPGFPTLVL----LAQ--LPEYRAMHE-----------VLADE 135 (695) Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~gy~~~a~----~~~--~~~~r~~v~-----------~~a~d 135 (695) +.+--...+....+.+-+.+.+..... ....- +.-=|...+. |+. -|+..+-++ =+|.. T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~~ 78 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINI--DPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKL 78 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceec--CHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHHH Confidence 000000111111111111100000000 00000 0000111111 110 011000000 01122 Q ss_pred HhhCCceeeccchhhhhccCccccccc----cccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCc Q lcl|Aclame:pro 136 CIRTWGEAIGGTKEKADTSGLAAGGNA----ASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQ 211 (695) Q Consensus 136 ~tR~~~~i~~~~~~d~~~~g~~~~~~~----~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~ 211 (695) .+++|=.++.+ ++ ..+++.... .........+.|.+.++.-++...+.+++..+-..||+++-+.++++.. T Consensus 79 i~~~~A~Ll~~---e~--~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~ 153 (517) T protein:vir:98 79 SADVLSGLVFN---EQ--CEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDNGEI 153 (517) T ss_pred HHHHhhhhhcC---Cc--ceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeCCee Confidence 22222211110 00 011111100 0111123445677778887899999999998888898887766643321 Q ss_pred h-------hccccCCccccccCcceEEEEEecchhccccce---ecccccccccCCceeEEEcceEEc------------ Q lcl|Aclame:pro 212 I-------MDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNY---NSINPVADDFYKPSTWWMIGTEVH------------ 269 (695) Q Consensus 212 ~-------~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~---~~~dp~s~~yg~P~~y~i~~~~iH------------ 269 (695) . .=-|+..+..++..+.|.......... ....| ..-.+.+-.++.- .|+|...-.+ T Consensus 154 ~I~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~-~~~~Yt~lE~H~~~~~~~~~~-~y~I~n~ly~s~~~~~lG~~v~ 231 (517) T protein:vir:98 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGN-KTVYYTLLEFHEWEKTEEGES-LYVITNELYKSDNEGEIGKRIP 231 (517) T ss_pred EEEEEcCCeeEEEEecCCCeEEEEEEEEEEEeecC-CceEEEEEEEEecCceeccCC-cEEEEEEEEecCCCcccccccc Confidence 1 111222221222111121110000000 00000 0000111111111 1333211110 Q ss_pred ----hhhE---EEecCCcch----------hhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeee-chH Q lcl|Aclame:pro 270 ----ATRL---HTIVSRPVG----------DMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILM-DLA 331 (695) Q Consensus 270 ----~SRl---i~~~~~~~p----------~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~-~~~ 331 (695) +.-| ..+.|-+-| +.. .....+|+|++..+.+.+...+.+......-+......++-- .++ T Consensus 232 L~~~~e~l~~~~~~~g~~~Plf~y~~~p~~N~~-~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~~i~vp~~~l 310 (517) T protein:vir:98 232 LEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNI-NPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVML 310 (517) T ss_pred ccccccCCCcceeECCCCcceEEEecCCccccc-ccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCcceecChhhh Confidence 0001 122222222 211 112357999999999999999988766655444433333221 122 Q ss_pred Hh-hcchHHHHHHHHHHHHHHhcCCceeEEEEcCCceeEEEeccc--CChHHHHHHHHHHHHhhhcCCceeeeccCcccc Q lcl|Aclame:pro 332 QA-LMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPL--SGLDALQAQAQEQMSAVSHIPLIKLLGITPTGL 408 (695) Q Consensus 332 ~~-l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~l--sgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gl 408 (695) .. ...++.. .- ..++.-..-+..+..+.++..++.++..+ ......++.+++.++..+|++..-| |...+|. T Consensus 311 ~~~~~~~g~~-~~---~~~d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~-~~~~~~~ 385 (517) T protein:vir:98 311 RTVPDESGMP-PP---QVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTF-SFDGRSM 385 (517) T ss_pred ccccCCCCcc-cC---CCCCcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCcccc-ccccccc Confidence 11 1111100 00 00000000001111222234466655554 4577788888999999999998776 6666666 Q ss_pred cCcch---HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----hcC-CC--CCceeEEeccccccchhHHHHHHHHHH Q lcl|Aclame:pro 409 NASSE---GEIRVWYDYVRAYQRNALQQLMNDVIVMIQLS-----LFG-AV--DPSIKWQWNALRELDDLEVAESRYKQA 477 (695) Q Consensus 409 natge---~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s-----~~g-~~--~~d~~~~f~pL~~~se~e~Aei~~~~a 477 (695) .|.. +..+.-|.+++++|.. ++..|++++..++.- .++ .+ +.++++.|.+--..+..+.++... T Consensus 386 -kTATEi~s~~~~~~~t~~~~~~~-~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~--- 460 (517) T protein:vir:98 386 -KTATEIVSENDLTYRTRNDHVYE-VEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYG--- 460 (517) T ss_pred -ccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHH--- Confidence 3443 2334566788876654 788899988776521 122 23 346889999988888776655433 Q ss_pred HhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccch Q lcl|Aclame:pro 478 QSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAP 553 (695) Q Consensus 478 ~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (695) .++.+|+++..+....+-... ................ ...... . ............. T Consensus 461 ----~~v~aG~ms~~~~i~~~~g~~------eeeA~~e~~~i~~E~~--~~~~~~---~----~~~~~~~~~gd~e 517 (517) T protein:vir:98 461 ----QAKTFGFIPTVEAIQRIFKVP------KKTAEQWLEEIRKDQI--ELDPVT---I----SQRAQKRMFGDEE 517 (517) T ss_pred ----HHHhcCCCCHHHHHHHhCCCC------hHHHHHHHHHHHHhcc--ccCCCC---c----cccccCCCCCCCC Confidence 344556666555432221100 0000000000000000 000000 0 0000000000000 No 196 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=96.96 E-value=0.00024 Score=40.45 Aligned_cols=431 Identities=12% Similarity=0.083 Sum_probs=174.5 Q ss_pred cchhhhhhhcccccCCCCcccccccccccccccccchh-hhhhh---ccCCCCchHHHHHHHh--Chhh-hhHhhcchHH Q lcl|Aclame:pro 63 PSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMD-ALSFV---TSSGFPGFPTLVLLAQ--LPEY-RAMHEVLADE 135 (695) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~f~gy~~~a~~~~--~~~~-r~~v~~~a~d 135 (695) .---+.-++|.-+ .|.-+....... ...+. ...--.-|..+..|+. |.++ ++.- ...+ T Consensus 1 ~~~~~~~~~~~~~-------------~~~~~~~~l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~--~~~~ 65 (506) T protein:vir:94 1 MDYDLTEHKQANL-------------IYQESLENLTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQS--RRHE 65 (506) T ss_pred CCcchhhhhccee-------------ecccchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc--cccc Confidence 0000000000000 000000000000 00110 0000011233333321 2221 1111 1112 Q ss_pred HhhCCceeeccchhh--------hhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEc Q lcl|Aclame:pro 136 CIRTWGEAIGGTKEK--------ADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIK 207 (695) Q Consensus 136 ~tR~~~~i~~~~~~d--------~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~ 207 (695) ..+...+|+.+-+.. .+..+.++. ..+.+..+.|...++.-++...+.++.+..-.||.+++++.++ T Consensus 66 ~~~~~~ki~~n~~~~Iv~~~~~~l~G~p~~~~-----~~d~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~d 140 (506) T protein:vir:94 66 DGKADHRATHSFAKYIADFQTSYSVGNPINVK-----LPDDGSNSGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRG 140 (506) T ss_pred ccCCcceeecchHHHHHHHhhhhhcccCceee-----cCcchHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEec Confidence 222222333222222 122222222 1233455667888888788889999999998999999998876 Q ss_pred CCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEc------------ceEE-chhhEE Q lcl|Aclame:pro 208 GDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI------------GTEV-HATRLH 274 (695) Q Consensus 208 ~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~------------~~~i-H~SRli 274 (695) .++.. .+.+++|.++.|...+..+ ..+-++ ..+|.+. -..+ -..++. T Consensus 141 ed~~~------------------~i~~~~p~~~~~v~dd~~~-~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~ 200 (506) T protein:vir:94 141 EDNEE------------------HLAKLDPLDTFVIYSTDVD-PKPIMA-VRYHQIELVDDNQVSTINYVPETWTADTYT 200 (506) T ss_pred CCCee------------------EEEEEcccceEEEecCCCC-CceEEE-EEEEeeeeccCCceeEEEEEEEEEeCceEE Confidence 54321 1334444444442211100 001110 0011100 0001 111222 Q ss_pred EecCCcchhhh--------------hcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechH--------- Q lcl|Aclame:pro 275 TIVSRPVGDML--------------KPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLA--------- 331 (695) Q Consensus 275 ~~~~~~~p~~~--------------~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~--------- 331 (695) ++.+......+ .-.++--|.|.++.+.+-+.+++.+....+.-+..++..++.+.+. T Consensus 201 ~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 280 (506) T protein:vir:94 201 LYNPTPIMGKMQVDTTKPITTFPVVEFKNSNFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSD 280 (506) T ss_pred EeccccCccceeccccccCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchh Confidence 22222111100 0112345889999999999999888777776555444333222111 Q ss_pred --Hhhcc---hHH-HHHHHHHHHHHHhcCCceeEEEEc--------CCcee--EEEecccCChHHHHHHHHHHHHhhhcC Q lcl|Aclame:pro 332 --QALMP---GAN-VDLSMRAELINRYRDNRNILFLDK--------ATEEF--FQFNTPLSGLDALQAQAQEQMSAVSHI 395 (695) Q Consensus 332 --~~l~~---~~~-~~l~~r~~~~~~~~~n~~~~~ld~--------~~e~~--~~~~~~lsgl~~~~~~~~~~iaaas~i 395 (695) ..+.+ ++. ..-....+.+..++.+. ++.++. .+.++ -+.+.+.++....++...+.|...+++ T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~ 359 (506) T protein:vir:94 281 MMNTIDPNDEDAMAKLAKDKLELIKEMKDAN-MLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHT 359 (506) T ss_pred ccccccccccccccccccchhHHHhhhhhcC-eeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCc Confidence 00100 000 00011222233333222 222211 12233 444566789999999999999999999 Q ss_pred CceeeeccCcccccCcchHHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHH--h-cCCCC---CceeEEeccccccchh Q lcl|Aclame:pro 396 PLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLS--L-FGAVD---PSIKWQWNALRELDDL 467 (695) Q Consensus 396 P~t~L~G~sp~Glnatge~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~l~~s--~-~g~~~---~d~~~~f~pL~~~se~ 467 (695) |-.-. + +-+| |.||+.=...|..... ...+..++..|++++.+++.- . .+..+ .++++.|++-...+.. T Consensus 360 p~~~~-~-~~~~-n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~ 436 (506) T protein:vir:94 360 PDLTD-E-NFAS-NSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNI 436 (506) T ss_pred ccccc-c-cccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHH Confidence 96432 1 1122 4566632223333222 345666888898888876532 1 12222 2577999999999998 Q ss_pred HHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccC Q lcl|Aclame:pro 468 EVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGAR 547 (695) Q Consensus 468 e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (695) +.+++..+. .|.++...+...+....+. .. +........... .... ............. T Consensus 437 e~a~~~~kl---------~g~iS~et~~~~lp~v~d~------~~-E~~ri~~E~~~~-~~~~----~~~~~~~~~~~~~ 495 (506) T protein:vir:94 437 SQIKALVQA---------GATLPQKYLYQQLPGVTNP------QD-IVDMMKEQSANG-DYSF----DQNGVISNDGQTN 495 (506) T ss_pred HHHHHHHHH---------hccCChHHHHHhCCCCCCH------HH-HHHHHHHHHHHH-hhcc----hhhcCCCcccCcc Confidence 888765543 2566666655444221110 00 000000000000 0000 0000000000000 Q ss_pred CCccchhhhhhhh Q lcl|Aclame:pro 548 AGATAPPTVANVN 560 (695) Q Consensus 548 ~~~~~~~~~~~~~ 560 (695) ........... T Consensus 496 --~~~~~~~~e~~ 506 (506) T protein:vir:94 496 --TTATQTDEEVR 506 (506) T ss_pred --ccccccccCCC Confidence 00000000000 No 197 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=96.90 E-value=0.00027 Score=40.16 Aligned_cols=445 Identities=12% Similarity=0.073 Sum_probs=182.4 Q ss_pred cChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchh Q lcl|Aclame:pro 21 VAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMD 100 (695) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (695) |.- -++.-+ .|+...-.......-.......+||...|.+...++ +....+++|+..+.. T Consensus 1 m~~--------~~L~~~--~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~------~~~~~a~~~~g~~~~---- 60 (524) T protein:vir:72 1 MKF--------NVLSLF--APWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEV------SSNEAASPYNAAFQT---- 60 (524) T ss_pred CCC--------chhhHh--hccccCcchhhhhhhccCCccccCccCCCCceeeee------cccccccccceeeee---- Confidence 111 111110 111110000000000000111122222222111111 000111122211111 Q ss_pred hhhhhcc--CCC-CchHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHH Q lcl|Aclame:pro 101 ALSFVTS--SGF-PGFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLK 172 (695) Q Consensus 101 ~~~~~~~--~~f-~gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~ 172 (695) ++.+ +.+ ..+++...| ++||++..+|+.+.+||+ .....+|...- ...+....-.+ T Consensus 61 ---~~g~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L-------------~~~~~s~~iK~ 124 (524) T protein:vir:72 61 ---IFGSYEPGMKTTRELIDTYRNLMNNYEVDNAVSEIVSDAIVYEDDTEVVALNL-------------DKSKFSPKIKN 124 (524) T ss_pred ---hhcccccccchHHHHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEe-------------cCcCcchHHHH Confidence 1111 011 235566655 469999999999998874 23333332211 11222333344 Q ss_pred HHHHHHHh----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecc Q lcl|Aclame:pro 173 QINDEIER----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSI 248 (695) Q Consensus 173 ~i~~~~~~----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~ 248 (695) +|.++++. |+....-.+.++.--..|+-+.-..++..+ .+.+|+.++-+||..+........ T Consensus 125 kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~--------------pk~GI~Elr~lDPr~i~~vr~i~~ 190 (524) T protein:vir:72 125 MMLDEFSDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKR--------------PKEGIKELRRLDPRQVQYVREIIT 190 (524) T ss_pred HHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCC--------------ccccceeeeeeCCccceeeeeecc Confidence 56666554 455666666666433455444333343221 122445555555555533111101 Q ss_pred ccccc---------c-cCCc--eeEEEcc--------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 249 NPVAD---------D-FYKP--STWWMIG--------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWL 308 (695) Q Consensus 249 dp~s~---------~-yg~P--~~y~i~~--------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~ 308 (695) ++..- . .|.| ..|..+| .+|+.+=+..-..+-+ +.....=.|.|.++...+.+.- T Consensus 191 ~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dAI~y~hSGL~-----d~~~~~i~gyLhkAiKp~NQLk 265 (524) T protein:vir:72 191 ETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAAVVYAHSGLV-----DCCGKNIIGYLHRAVKPANQLK 265 (524) T ss_pred CCCccchhhcchhhheeeccCccccccCccccCCCcceecchhheeeeeccce-----eCCCCceeccchhhhHhHHhhh Confidence 11000 0 0111 1112222 3555554332222211 1111223455555544444333 Q ss_pred HHhHHHHHHHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC-------------------- Q lcl|Aclame:pro 309 RTRQSVSDIVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA-------------------- 364 (695) Q Consensus 309 ~~~~~~~~l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~-------------------- 364 (695) .... |-++++.+ =.|+-+|..+.-...++.=|. ++++.+|+ -++.|++ T Consensus 266 mlED--AlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~---~im~k~KN---klvYDa~TGev~ddrk~msMlEDyWLp 337 (524) T protein:vir:72 266 LLED--AVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQ---HVMNTMKN---RVVYDASTGKIKNQQHNMSMTEDYWLQ 337 (524) T ss_pred HHHh--hHHHHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhcCc---eeEEeCCCCeeccchhhhhhHhhhccc Confidence 2222 33344332 234444432221111111111 11122211 1122211 Q ss_pred ------CceeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc--Ccch--HHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 365 ------TEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSE--GEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 365 ------~e~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~ 432 (695) .-+++++. .+|+.++|+ .-|...+=.+.++|+++|-..+++|+| .++| -|.-.|...|..+|.. +. T Consensus 338 RReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~r-Fs 415 (524) T protein:vir:72 338 RRDGKAVTEVDTLPGADNTGNMEDI-RWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHK-FE 415 (524) T ss_pred ccCCCcccceeeccccCCcChHHHH-HHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHH-HH Confidence 23455663 356777775 567777889999999999887888886 4444 2556799999998866 45 Q ss_pred HHHHHHHHHHHHH-------hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhh--hhcchhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLS-------LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQ--EQVIRPDQVAARLNTEPD 503 (695) Q Consensus 433 p~l~~l~~~l~~s-------~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~--~g~i~~~e~r~~L~~~~~ 503 (695) ..+..++..-... .|-.+-+++.|.|.-=..-++-..+++......+.+.+-. .-.++.+.+++.+....+ T Consensus 416 ~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tD 495 (524) T protein:vir:72 416 EVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFAELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTD 495 (524) T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCH Confidence 5555544432211 2333445788999988888888888888777766655422 112344444443332222 Q ss_pred hhhhhhhhhhhhh--hhhhhhhhhhhhhh Q lcl|Aclame:pro 504 GPYAGKLDANDDP--GVPADDDIDGVLTY 530 (695) Q Consensus 504 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 530 (695) ............+ .............+ T Consensus 496 eei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:72 496 EEIEQEAKQIEEESKEARFQDPDQEQEDF 524 (524) T ss_pred HHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 2111111111111 00000000000111 No 198 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=96.90 E-value=0.00027 Score=40.14 Aligned_cols=458 Identities=14% Similarity=0.098 Sum_probs=188.2 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCC-chHHHHHHH---h Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFP-GFPTLVLLA---Q 121 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-gy~~~a~~~---~ 121 (695) |+.-=.|+..+.+.. ++..++..|.... +.. ...+++.++ .+... -++|. .+++...|+ + T Consensus 1 m~~lfg~~i~~~~~~----~~~~s~~~~~~~d-g~~-~i~~~~~~~-~~~~~---------e~~~~~~~eLI~~YR~ma~ 64 (533) T protein:vir:10 1 MSQLFGFSLERAKKA----PKGPSFVQKDNLD-GSQ-PVSGGGYYG-YTVDF---------DGQVRNEYQLISRYREMVL 64 (533) T ss_pred Ccccccccccccccc----ccCCCCCCCCccc-ccc-eeecccccc-eeeec---------ccccchHHHHHHHHHHHhh Confidence 555555554432221 1111211111111 111 111121111 11111 11222 467777665 6 Q ss_pred ChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh----hchHHHHHHHHHhcC Q lcl|Aclame:pro 122 LPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER----LRIRDAVRTTVIHDQ 195 (695) Q Consensus 122 ~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~----l~~~~~~~~a~~~~R 195 (695) ||++..+|+.+.+||+ ...-..|...-+ ..+....-.++|..+++. |++...-.+.++.-- T Consensus 65 ~pEvd~Av~eIVneaiv~d~~~~pV~i~Ld-------------~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WY 131 (533) T protein:vir:10 65 QPECDSAVDDIVNETICGNFDDVPVSVELS-------------NLKVSDKIKKLIREEFGEILRLLDFENRSYEIFRRWY 131 (533) T ss_pred ccchhhHHHHhhcceeeecCCCceEEEEec-------------ccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhh Confidence 9999999999988874 233333322111 111223334456666554 344544444444222 Q ss_pred ccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee---cccc------cccccCCceeEEE--- Q lcl|Aclame:pro 196 AFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN---SINP------VADDFYKPSTWWM--- 263 (695) Q Consensus 196 l~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~---~~dp------~s~~yg~P~~y~i--- 263 (695) ..|+-+--..|+.++ .+.+|+.++-+||..+.+...- ..|. ....|+.-..|.+ T Consensus 132 VDgRi~fHkiid~~~--------------pk~GI~ELr~lDPr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp 197 (533) T protein:vir:10 132 VDGRLFYHKVIDPDN--------------PQGGLIELRYIDPRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDP 197 (533) T ss_pred hcceEEEEEEecCCC--------------ccccceeeeeccccceeeeeeeeccCCCccceeecchhhhccceeeeeecc Confidence 333333223332222 1234556666666666552211 0011 1112322222222 Q ss_pred --------cceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhc----cceeeechH Q lcl|Aclame:pro 264 --------IGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS----VSGILMDLA 331 (695) Q Consensus 264 --------~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~----~~v~k~~~~ 331 (695) ++.+|+.+=+. |...-+ .+.....=.|.|.++...+.+.-.... |-++++.+ =.|+-+|.. T Consensus 198 ~g~~~~~~~~vkI~~dAI~-y~hSGl----~d~~~~~i~syLhkAiKp~NQLkm~ED--AlVIYRitRAPeRRvFYIDVG 270 (533) T protein:vir:10 198 KGLKNSTTQGLKIAPDSIC-YVHSGI----MDLNKNMTLSHLHKAIKAVNQLRMIED--SLVIYRLSRAPERRIFYIDVG 270 (533) T ss_pred ccccccCCCceecchhhee-eeeccc----eeCCCCceeccchHhHHHHHhhHHHHh--hHHHHhhhccccceEEEEecC Confidence 13456665433 222111 122222334666665555544433322 33444433 234444432 Q ss_pred HhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC--------------------------CceeEEEe--cccCChHHHHH Q lcl|Aclame:pro 332 QALMPGANVDLSMRAELINRYRDNRNILFLDKA--------------------------TEEFFQFN--TPLSGLDALQA 383 (695) Q Consensus 332 ~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~--------------------------~e~~~~~~--~~lsgl~~~~~ 383 (695) +.-....+.=|. ++++.+| +-++.|++ .-+++++. -+|+.++|+ . T Consensus 271 nLPk~KAeqYlr---~iM~k~K---NklVYDa~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~DV-~ 343 (533) T protein:vir:10 271 NLPKNKAEQYLR---EVMGRYR---NKLVYDANTGEIKDDKKFMSMLEDFWLPRREGGRGTEITTLPGGQNLGELEDV-K 343 (533) T ss_pred CCCchhHHHHHH---HHHHhcc---ceEEEeccCceecccchhhhhHhhhcccccCCCCccceeeccccCCcChHHHH-H Confidence 221111111111 1222222 11222221 23455553 446667775 5 Q ss_pred HHHHHHHhhhcCCceeeeccCcccccCc--ch--HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------hcCCCCC Q lcl|Aclame:pro 384 QAQEQMSAVSHIPLIKLLGITPTGLNAS--SE--GEIRVWYDYVRAYQRNALQQLMNDVIVMIQLS-------LFGAVDP 452 (695) Q Consensus 384 ~~~~~iaaas~iP~t~L~G~sp~Glnat--ge--~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s-------~~g~~~~ 452 (695) -|...+=-+.++|+++|=. .+|||-+ +| -|.-.|...|..+|.. +...+..++..-... .|-.+-+ T Consensus 344 YF~kKLY~aLnVP~SRl~~--e~~f~~Gr~~EItRDEiKF~KFI~RLR~r-Fs~lF~~~Lk~qLiLKgiit~eeW~~i~~ 420 (533) T protein:vir:10 344 YFQKKLYKSLNVPGSRLET--ETTFNVGRAAEITRDEVKFQKFVARLRKR-FSELFTDLLKTQLVLKGVISIEEWDQMKE 420 (533) T ss_pred HHHHHHHHHhCCCccccCC--CCcccccccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccCCCHHHHHHHhh Confidence 6777788999999999943 4677642 22 2456799999998866 455555544432211 2333445 Q ss_pred ceeEEeccccccchhHHHHHHHHHHHhhhhhh--hhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 453 SIKWQWNALRELDDLEVAESRYKQAQSDVLYV--QEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTY 530 (695) Q Consensus 453 d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~--~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (695) ++.|.|.-=...++-..+++......+.+.+- ..-.++.+.+++.+....+...-........+........... .. T Consensus 421 ~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~-~~ 499 (533) T protein:vir:10 421 HIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQTDVEMKEIDKQIESEMESGIIADPAA-EM 499 (533) T ss_pred cceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCCcc-hh Confidence 78899998888888888888877776665541 1123344444444333222222211111111111111111100 00 Q ss_pred hhhhhhhcccccccccCCCccchhhhhhhhhcccc Q lcl|Aclame:pro 531 VQRLAEGGDTGAPGGARAGATAPPTVANVNANVKP 565 (695) Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (695) .+..+............... .....+...+.... T Consensus 500 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 533 (533) T protein:vir:10 500 DPAMAAGDPDAGGAPAEEVA-PEGPDPSDERKAEF 533 (533) T ss_pred hHHhcCCCCCcCCcccccCC-CCCCCcchhhccCC Confidence 00111110000000000000 00000000000000 No 199 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=96.89 E-value=0.00028 Score=40.08 Aligned_cols=445 Identities=10% Similarity=0.028 Sum_probs=188.8 Q ss_pred HHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhc Q lcl|Aclame:pro 27 LAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVT 106 (695) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (695) .|++-.+++-++---... .......-...+...+||... .|. + ....+..+ .+.+.-.-.+|. T Consensus 1 ~~~~~~~~~lf~f~~~~d--e~~~~~~~~~~~~S~~~p~~~---------dGa-~-~I~~~~~~----~~~~~~~q~~y~ 63 (524) T protein:vir:10 1 MANFNTILSFLKPWANED--EKEYKQQINNNLESVTAPKLD---------DGA-R-EIETQEQN----IPYNALMQQMFG 63 (524) T ss_pred CCchhhHHHHhhhhhcch--hhhhhhhhccCCCccccCCCC---------CCc-e-eeccCccc----ccchhhhhhhhh Confidence 666666666544311100 000000000001111111111 111 1 11111111 011000001111 Q ss_pred c--CCC-CchHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHH Q lcl|Aclame:pro 107 S--SGF-PGFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEI 178 (695) Q Consensus 107 ~--~~f-~gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 178 (695) . +++ -.+++...| ++||++..+|+.+.+||+ .....+|...- ...+....-.++|.+++ T Consensus 64 ~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L-------------d~~~~s~siK~kI~eeF 130 (524) T protein:vir:10 64 SNEPEVKNTRELIDTYRNLMNNYEVDNAVQEIVSDAIVYEDDKEVVALNL-------------DGTDFSQSIKDKILAEF 130 (524) T ss_pred cccchhhhHHHHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEe-------------cccCcchHHHHHHHHHH Confidence 0 111 135555555 469999999999998874 23333332211 11223344445566665 Q ss_pred Hh----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceec------- Q lcl|Aclame:pro 179 ER----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNS------- 247 (695) Q Consensus 179 ~~----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~------- 247 (695) +. |+....-.+.++.--..|+-+--..|+.+++ +.+|+.++-+||..+....... T Consensus 131 ~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~~~p--------------k~GI~Elr~lDPr~i~~vr~i~~~~~~~~ 196 (524) T protein:vir:10 131 SEVLNLLNFQRKGTDHFQRWYVDSRIFFHKIINPKKM--------------KDGVQELRRLDPRQVQYIREIVTRMEDGV 196 (524) T ss_pred HHHHHHhccchhhhHHHhhheeeceEEEEEEeeCCCc--------------cccceeeeeeCCccceeeeeecccCcccc Confidence 54 4556666666664344555333333432221 2244455555555553311111 Q ss_pred -----------ccccccccC-CceeEEE-cceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHH Q lcl|Aclame:pro 248 -----------INPVADDFY-KPSTWWM-IGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSV 314 (695) Q Consensus 248 -----------~dp~s~~yg-~P~~y~i-~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~ 314 (695) .+|..+.|. .+..|.- ++.+|+.+=++....+-++ .....=.|.|.++...+.+.-.... T Consensus 197 ~vi~~~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~~dAIvy~~SGL~d-----~~~~~i~syLhkAiKp~NQLkm~ED-- 269 (524) T protein:vir:10 197 KIVDGYREFFVYDTGHESYCADGRIYSAGTKVKIPRAAVVYAHSGLLD-----CCGKNIIGYLQRAIKPANQLKLMED-- 269 (524) T ss_pred hhhcchhhheeecCCCcccccCcceecCCcceecchhheeeeccCccc-----CCCCceeccchHhhHHHHhhHHHHh-- Confidence 122221111 1111111 1246777766544443322 1222334666665544444433222 Q ss_pred HHHHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEc--------------------------C Q lcl|Aclame:pro 315 SDIVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK--------------------------A 364 (695) Q Consensus 315 ~~l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~--------------------------~ 364 (695) |-++++.+ =.|+-+|..+.-...++.=|. ++++.+|+ -++.|. - T Consensus 270 AlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~---~im~k~kN---KlvYDa~TGev~ddrk~msMlEDyWLpRReGgr 343 (524) T protein:vir:10 270 AMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQ---HIMNTMKN---RVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKA 343 (524) T ss_pred hHHHHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhcCc---eeEEeccCCeeccchhhhhhHhhhcccccCCCC Confidence 33444432 234444432211111111111 11111110 111111 1 Q ss_pred CceeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc--Ccch--HHHHHHHHHHHHHHhhhhhHHHHHH Q lcl|Aclame:pro 365 TEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSE--GEIRVWYDYVRAYQRNALQQLMNDV 438 (695) Q Consensus 365 ~e~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~p~l~~l 438 (695) .-+++++. -+|+.++|+ .-|...+=-+.++|+++|-.++++||| .++| -|.-.|...|..+|.. +...+..+ T Consensus 344 gTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~~EItRDEiKF~KFI~rLR~r-Fs~lf~~~ 421 (524) T protein:vir:10 344 VTEVDTMPGATGMSDMDDV-LYFRTALYRALRIPESRIPSESNSGVMFDAGTAITRDELKFAKWIRQLQNK-FEEIFLDP 421 (524) T ss_pred ccceeeccccCCcChHHHH-HHHHHHHHHHhCCCchhccCCCCccccccccchhhHHHHHHHHHHHHHHHH-HHHHHHHH Confidence 23455653 456677775 567777889999999999666666764 3333 2456799999998866 45555554 Q ss_pred HHHHHHH-------hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhh--hhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 439 IVMIQLS-------LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQ--EQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 439 ~~~l~~s-------~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~--~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) +..-... .|-.+-+++.|.|.-=..-++-..+++......+.+.+-. .-.++.+.+++.+....+...... T Consensus 422 L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~ 501 (524) T protein:vir:10 422 LKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPFIGKYISHQTAMKDFLQMTDEEINQE 501 (524) T ss_pred HHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHH Confidence 4432211 2333445788999988888888888888777766655422 112344444443332222211111 Q ss_pred hhhhhhh--hhhhhhhhhhhhhh Q lcl|Aclame:pro 510 LDANDDP--GVPADDDIDGVLTY 530 (695) Q Consensus 510 ~~~~~~~--~~~~~~~~~~~~~~ 530 (695) ......+ .............+ T Consensus 502 ~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 502 AKQIEEESKEARFQNPDEEEEDF 524 (524) T ss_pred HHHHHHHhhcCCCCCCChhhhcC Confidence 1111100 00000000000000 No 200 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=96.85 E-value=0.0003 Score=39.92 Aligned_cols=445 Identities=12% Similarity=0.074 Sum_probs=182.2 Q ss_pred cChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchh Q lcl|Aclame:pro 21 VAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMD 100 (695) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (695) |.- -++.-+ .|+...-.......-.......+||...|.+...++ +....+++|+..+.. T Consensus 1 m~~--------~~L~~~--~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~------~~~~~a~~~~g~~~~---- 60 (524) T protein:vir:10 1 MKF--------NVLSLF--APWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEV------SSNEAASPYNAAFQT---- 60 (524) T ss_pred CCC--------chhhHh--hccccCcchhhhhhhccCCccccCccCCCCceeeee------cccccccccceeeee---- Confidence 111 111110 111110000000000000111122222222111111 000111122211111 Q ss_pred hhhhhcc--CCC-CchHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHH Q lcl|Aclame:pro 101 ALSFVTS--SGF-PGFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLK 172 (695) Q Consensus 101 ~~~~~~~--~~f-~gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~ 172 (695) ++.+ +.+ ..+++...| ++||++..+|+.+.+||+ .....+|...- ...+....-.+ T Consensus 61 ---~~g~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L-------------~~~~~s~~iK~ 124 (524) T protein:vir:10 61 ---IFGSYEPGMKTTRELIDTYRNLMNNYEVDNAVSEIVSDAIVYEDDTEVVALNL-------------DKSKFSPKIKN 124 (524) T ss_pred ---hhcccccccchHHHHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEe-------------cCcCcchHHHH Confidence 1111 011 235566655 469999999999998874 23333332211 11222333344 Q ss_pred HHHHHHHh----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecc Q lcl|Aclame:pro 173 QINDEIER----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSI 248 (695) Q Consensus 173 ~i~~~~~~----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~ 248 (695) +|.++++. |+...+-.+.++.--..|+-+.-..++..+ .+.+|+.++-+||..+........ T Consensus 125 kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~--------------pk~GI~Elr~lDPr~i~~vr~i~~ 190 (524) T protein:vir:10 125 MMLDEFNDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKR--------------PKEGIKELRRLDPRQVQYVREIIT 190 (524) T ss_pred HHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEeeCCC--------------ccccceeeeeeCCccceeeeeecc Confidence 56666554 455666666666433445443333332221 122455555556555533111101 Q ss_pred ccccc---------c-cCCc--eeEEEcc--------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 249 NPVAD---------D-FYKP--STWWMIG--------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWL 308 (695) Q Consensus 249 dp~s~---------~-yg~P--~~y~i~~--------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~ 308 (695) ++..- . .|.| ..|..+| .+|+.+=+..-..+-+ +.....=.|.|.++...+.+.- T Consensus 191 ~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dAI~y~hSGL~-----d~~~~~i~gyLhkAiKp~NQLk 265 (524) T protein:vir:10 191 ETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAAIVYAHSGLV-----DCCGKNIIGYLHRAVKPANQLK 265 (524) T ss_pred CCCccchhhcchhhheeeccCccccccCccccCCCcceecchhheeeeeccce-----eCCCCceeccchhhhHHHHhhh Confidence 11000 0 0111 1112222 3555554332222211 1111223455555544444433 Q ss_pred HHhHHHHHHHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC-------------------- Q lcl|Aclame:pro 309 RTRQSVSDIVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA-------------------- 364 (695) Q Consensus 309 ~~~~~~~~l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~-------------------- 364 (695) .... |-++++.+ =.|+-+|..+.-...++.=|. ++++.+|+ -++.|++ T Consensus 266 mlED--AlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~---~im~k~KN---klvYDa~TGev~ddrk~msMlEDyWLp 337 (524) T protein:vir:10 266 LLED--AVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQ---HVMNTMKN---RVVYDASTGKIKNQQHNMSMTEDYWLQ 337 (524) T ss_pred HHHh--hHHHHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhcCc---eeEEeCCCCeeccchhhhhhHhhhccc Confidence 2222 33344332 234444432221111111111 11122211 1122211 Q ss_pred ------CceeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc--Ccch--HHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 365 ------TEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSE--GEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 365 ------~e~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~ 432 (695) .-+++++. .+|+.++|+ .-|...+=.+.++|+++|-..+++|+| .++| -|.-.|...|..+|.. +. T Consensus 338 RReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~r-Fs 415 (524) T protein:vir:10 338 RRDGKAVTEVDTLPGADNTGNMEDV-RWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHK-FE 415 (524) T ss_pred ccCCCcccceeeccccCCcChHHHH-HHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHH-HH Confidence 23455663 356777775 567777889999999999887888886 4444 2556799999998866 45 Q ss_pred HHHHHHHHHHHHH-------hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhh--hhcchhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLS-------LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQ--EQVIRPDQVAARLNTEPD 503 (695) Q Consensus 433 p~l~~l~~~l~~s-------~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~--~g~i~~~e~r~~L~~~~~ 503 (695) ..+..++..-... .|-.+-+++.|.|.-=..-++-..+++......+.+.+-. .-.++.+.+++.+....+ T Consensus 416 ~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tD 495 (524) T protein:vir:10 416 EVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFTELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTD 495 (524) T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCH Confidence 5555544432211 2333445788999988888888888888777766655422 112344444443332222 Q ss_pred hhhhhhhhhhhhh--hhhhhhhhhhhhhh Q lcl|Aclame:pro 504 GPYAGKLDANDDP--GVPADDDIDGVLTY 530 (695) Q Consensus 504 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 530 (695) ............+ .............+ T Consensus 496 eei~~~~k~I~~E~k~~~~~~~~~~~~~f 524 (524) T protein:vir:10 496 EEIEQEAKQIEEESKEARFQDPDQEQEDF 524 (524) T ss_pred HHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 2111111111111 00000000000111 No 201 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=96.77 E-value=0.00035 Score=39.52 Aligned_cols=467 Identities=11% Similarity=0.096 Sum_probs=184.1 Q ss_pred hhhcccccccccc--cccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCC-CchHHHHHH--- Q lcl|Aclame:pro 46 MGRRGALNALDAA--PVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGF-PGFPTLVLL--- 119 (695) Q Consensus 46 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~gy~~~a~~--- 119 (695) |+.-=.|...+.. .+..++| |....|..+ . .++.++.. . .++.++.| -.+++...| T Consensus 1 m~~lfgf~i~~~~~~~~~S~vp-------p~~~~~~~~--i-~~g~~g~~---v-----~~~g~~~~~n~~eLI~~YR~m 62 (564) T protein:vir:10 1 MSQLFGFLINEKEGQKGQSPVP-------PNDEASVST--V-AGGYFGTY---V-----DTSGGQNSRNEYELIRRYRDM 62 (564) T ss_pred CcchhcceeeeeccCCCCCccc-------CCcCCChhh--h-hcccccee---e-----ecccccchhhHHHHHHHHHHH Confidence 5554444432211 1111111 111111111 1 11111111 0 11111122 135555655 Q ss_pred HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh----hchHHHHHHHHHh Q lcl|Aclame:pro 120 AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER----LRIRDAVRTTVIH 193 (695) Q Consensus 120 ~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~----l~~~~~~~~a~~~ 193 (695) ++||++..+|+.+.+||+ .....+|...- ...+....-.++|.++++. |++...-.+.++. T Consensus 63 a~~pEVd~Av~eIVneaIv~d~~~~pV~vdL-------------~~~~~s~siK~kI~eEF~~Il~ll~F~~~~~e~fR~ 129 (564) T protein:vir:10 63 SLHPEVDSAIDEIVNEFVVNDGDDKPVEVDL-------------QNLEIGSGVKKKIRDEFNRILRMMNFNVNAHEIIRN 129 (564) T ss_pred hhccchhhHHHHhhcceeEecCCCceEEEEe-------------cccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhh Confidence 469999999999988874 23333332211 1223344445556666654 3445444444443 Q ss_pred cCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccc------------cccccCC-cee Q lcl|Aclame:pro 194 DQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINP------------VADDFYK-PST 260 (695) Q Consensus 194 ~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp------------~s~~yg~-P~~ 260 (695) --..|+-+--..|+.+++ +.+|+.|+.+||..+........++ ..-+|+. +++ T Consensus 130 WYVDgRi~fHkiid~~~p--------------k~GI~eLr~lDPr~i~~vr~i~~~~~~~~~~v~k~~~~~~~y~~~~Ey 195 (564) T protein:vir:10 130 WYVDGRSHYHKVIDLDNP--------------KKGILELRYIDSLKIRKVRQKLKDVDPNRKEIEKGTALQYDYGDFIEY 195 (564) T ss_pred hhhcceEEEEEEeeCCCh--------------hhhhhhhhhhcccceeeeeeeccccccccceeeeeeeeeccccccccc Confidence 223343333333322221 1135556666666554432211111 1112332 455 Q ss_pred EEEcc---------------------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHH Q lcl|Aclame:pro 261 WWMIG---------------------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVK 319 (695) Q Consensus 261 y~i~~---------------------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~ 319 (695) |.+++ .+|+.+=+..-..+ +.+..+..=.|.|.++...+.+.-.... |-+++ T Consensus 196 y~Ynp~~~~g~~~~~~~~~~~~~~~~ikI~~daI~y~hSG-----L~d~~~~~i~gyLhkAIKp~NQLkmlED--AlVIY 268 (564) T protein:vir:10 196 YIYNPKGFAGNIPMVTGSMDWSNQEGIKIASDAIAQSTSG-----LMDLNKKMTLSFLHKAIKSLNQLRMIED--SLVIY 268 (564) T ss_pred eeeccccccCcccccccccccccccceeechhhcceeccc-----ceeCCCCceeccchhhhHhHHhhHHHHh--hHHHH Confidence 55542 24444433222211 1122233345566655544444333222 33444 Q ss_pred Hhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC--------------------------CceeE Q lcl|Aclame:pro 320 QFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA--------------------------TEEFF 369 (695) Q Consensus 320 ~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~--------------------------~e~~~ 369 (695) +.+ =.|+-+|..+.-....+.=|. ++++.+| +-++.|++ .-+++ T Consensus 269 RitRAPeRRvFYIDVGnLPk~KAeqYlr---~iM~k~K---NklVYDa~TGevrddrk~msMlEDyWLPRReGgrgTEIt 342 (564) T protein:vir:10 269 RLSRAPERRIFYIDVGNLPKVKAEQYLR---DVMSRYR---NKLVYDGQTGEIRDDKKHMSMLEDFWLPRREGGRGTEIT 342 (564) T ss_pred hhhccccceEEEEecCCCCchhHHHHHH---HHHHhcC---ceEEEeccCceecccchhhhhHhhhcccccCCCccccee Confidence 433 234444432221111111111 1222222 11222221 22455 Q ss_pred EEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc--Ccch--HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 370 QFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSE--GEIRVWYDYVRAYQRNALQQLMNDVIVMIQ 443 (695) Q Consensus 370 ~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~ 443 (695) ++. -+|+.++|+ .-|...+=-+.++|+++|-.+ .+||| .++| -|.-.|...|.++|.. +...+..++..-. T Consensus 343 TLpGgqnLgem~DV-~YF~kKLY~aLnVP~SRl~~e-~~~f~~Gr~~EItRDEiKF~KFI~RLR~r-Fs~lF~~~Lk~qL 419 (564) T protein:vir:10 343 TLPGGQNLGELKDV-EYFKKKLYNSLNLPPSRLTDD-NKAFNLGKSTEILRDELKFTKFIGRLRKR-FAQLFHDILKTQL 419 (564) T ss_pred eccccCCcchHHHH-HHHHHHHHHHhCCCcccccCC-CceeecccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh Confidence 553 457777776 467777889999999999654 34565 4444 2456799999998866 4555555444322 Q ss_pred HH-------hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhh--hhhcchhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 444 LS-------LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV--QEQVIRPDQVAARLNTEPDGPYAGKLDAND 514 (695) Q Consensus 444 ~s-------~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~--~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~ 514 (695) .. .|-.+-+++.|.|.-=...++-..+++......+.+.+- ..-.++.+.+++.+....+........... T Consensus 420 iLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~ 499 (564) T protein:vir:10 420 ILKGIITPEDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGKYFSTEYIRRKILMQTENEFKEIDKQMK 499 (564) T ss_pred hhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHH Confidence 11 233344578899988888888888888877766655541 112334444444333222221111111110 Q ss_pred hhhhhhhhhhhhhhhhh----hhhhhhcccccccccCCCccchhhhhhh--hhccccccccccCc Q lcl|Aclame:pro 515 DPGVPADDDIDGVLTYV----QRLAEGGDTGAPGGARAGATAPPTVANV--NANVKPREAGAQDA 573 (695) Q Consensus 515 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 573 (695) .+............... ............................ .............. T Consensus 500 ~E~k~~~~~~P~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 564 (564) T protein:vir:10 500 SDIESGLAIDPIQVNMLDDMEKQNQAFAPELQAAQDDLAAEREIKKLNSAPKPPPSQQSKSQSNK 564 (564) T ss_pred HHhhcCCCCCchhhhcCCCccCCCCcCCcchhhhccccccccChhhhccCCCCCCCCCCcCcCCC Confidence 00000000000000000 0000000000000000000000000000 00000000000000 No 202 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=96.66 E-value=0.00043 Score=39.03 Aligned_cols=441 Identities=11% Similarity=0.056 Sum_probs=185.4 Q ss_pred HHHHHHHhcCCCCcccchhhcccccccc-------cccccccchhhhhhhcccccCCCCcccccccccccccccccchhh Q lcl|Aclame:pro 29 AAATIATATAAQPVPADMGRRGALNALD-------AAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDA 101 (695) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (695) ++- +++- |+.-..+...+ .+...+||...+++ .++....+.|....++.++.. .+ T Consensus 1 ~~~-~l~~---------~~~~~~~~~~~~~~~~~~~~~s~~~P~~~dGa--~~i~~~~~~~~~~~gg~~~~~------~~ 62 (521) T protein:vir:81 1 MFS-RLKM---------LARWADFDNDKYEEQIKDKAESIAAPKNNDGA--TEVEINDNLPASAWNSLTQQF------YS 62 (521) T ss_pred Ccc-hhhh---------hHhhcCchhhhHHhhhccCccccccCCCCCCc--eEecccCCCcceeecceeeee------cc Confidence 100 0110 11111111110 01111111111111 111122222222112111111 11 Q ss_pred hhhhccCCCCchHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHH Q lcl|Aclame:pro 102 LSFVTSSGFPGFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQIND 176 (695) Q Consensus 102 ~~~~~~~~f~gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~ 176 (695) ++.-. --.+++...| ++||++..+|+.+.+||+ .....+|...-+ ..+....-.++|.+ T Consensus 63 ~e~~~---~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~-------------~~~~s~~iK~kI~e 126 (521) T protein:vir:81 63 TDQKI---STTKQLVNTYRGLMNNHEVENAVQNIVNDAIVFEEGHEVVSLNLE-------------ATGFSESVKERIHE 126 (521) T ss_pred cccch---hhHHHHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEec-------------ccccchHHHHHHHH Confidence 11100 0124555555 469999999999998874 233333322111 12233344445666 Q ss_pred HHHh----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecc-cc- Q lcl|Aclame:pro 177 EIER----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSI-NP- 250 (695) Q Consensus 177 ~~~~----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~-dp- 250 (695) +++. |+....-.+.++.--..|+-+.-..++ +++ +.+|+.++-+||..+........ |. T Consensus 127 eF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid-~~p--------------k~GI~Elr~lDPr~i~~vr~i~k~~~~ 191 (521) T protein:vir:81 127 EFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKIIG-KNP--------------KDGIVELRQLDPRNLEYVREIITEDTP 191 (521) T ss_pred HHHHHHHHhccchhhhHHHhhhhhcceEEEEEEEc-CCc--------------cccceeeeeeCCcceeeeeeecccccC Confidence 6554 455666666666444566666556554 221 22455566666655544222110 00 Q ss_pred ccccc--------CCc--eeEEEcc--------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhH Q lcl|Aclame:pro 251 VADDF--------YKP--STWWMIG--------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQ 312 (695) Q Consensus 251 ~s~~y--------g~P--~~y~i~~--------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~ 312 (695) .-..+ |.| ..|...| .+|+.+=+.--..+ +.+.....=.|.|.++...+.+.-.... T Consensus 192 ~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dAI~y~hSG-----l~d~~~~~i~syLhkAiKp~NQLkm~ED 266 (521) T protein:vir:81 192 EGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSAITYAHSG-----LMDCDDKYIIGYLHRAVKPANQLKLLED 266 (521) T ss_pred ccceecceeeeeeeecCCccccccceeecCCcceeechhheeeeecc-----ceeCCCCeeeecchhhhHhHHhhHHHHh Confidence 00001 111 0111122 34454433321111 1122222234666665555444433322 Q ss_pred HHHHHHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcC-------------CceeEEE----------EcCC Q lcl|Aclame:pro 313 SVSDIVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRD-------------NRNILFL----------DKAT 365 (695) Q Consensus 313 ~~~~l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~-------------n~~~~~l----------d~~~ 365 (695) |-++++.+ =.|+-+|..+.-...++.=|. ++++.+|+ +..-+-| .+-. T Consensus 267 --AlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~---~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrg 341 (521) T protein:vir:81 267 --AMVVYRITRAPERRVFFIDTGNMNNRKAAQHMN---SVAQSFKNRVVYDASTGKLKNQQANLSMTEDYWLQRRDGKAI 341 (521) T ss_pred --hHHHHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhcCceeEeecccccccccccccchhhhhcccccCCCcc Confidence 33444433 234444432221111111111 11222221 1111111 0112 Q ss_pred ceeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc--Ccch--HHHHHHHHHHHHHHhhhhhHHHHHHH Q lcl|Aclame:pro 366 EEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSE--GEIRVWYDYVRAYQRNALQQLMNDVI 439 (695) Q Consensus 366 e~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~p~l~~l~ 439 (695) -+++++. .+|+.++|+ .-|...+=-+.++|+++|-.++.+||| .++| -|.-.|...|..+|.. +...+..++ T Consensus 342 TEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~r-Fs~lf~~~L 419 (521) T protein:vir:81 342 TDVTTLPGASGMSDIDDI-RYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFSKFIRTRQSQ-FSEVLRDPL 419 (521) T ss_pred cceeecccCCCCChHHHH-HHHHHHHHHHhCCccccccCCCCcceeccccchhhHHHHHHHHHHHHHHHH-HHHHHHHHH Confidence 3466664 467777776 567777889999999999666667765 4444 2556799999998866 455555544 Q ss_pred HHHHHHh-------cCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhh--hhcchhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 440 VMIQLSL-------FGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQ--EQVIRPDQVAARLNTEPDGPYAGKL 510 (695) Q Consensus 440 ~~l~~s~-------~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~--~g~i~~~e~r~~L~~~~~~~~~~~~ 510 (695) ..-...+ |-.+-+.+.|.|.-=..-+|-..+++......+.+.+-. .-.++.+.+++.+....+....... T Consensus 420 ~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDeei~~~~ 499 (521) T protein:vir:81 420 KYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQMDTEK 499 (521) T ss_pred HHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHH Confidence 4322112 222334588999988888888888888777766655422 1123444444333322221111111 Q ss_pred hhhhhhhhh--hhhhhhhhhhh Q lcl|Aclame:pro 511 DANDDPGVP--ADDDIDGVLTY 530 (695) Q Consensus 511 ~~~~~~~~~--~~~~~~~~~~~ 530 (695) .....+... ..........+ T Consensus 500 k~I~~E~~~~~~~~p~~~~~~f 521 (521) T protein:vir:81 500 KQIEEEANDPRFKQTPDEIEDF 521 (521) T ss_pred HHHHHHhhCCCCCCCcccccCC Confidence 100000000 00000000000 No 203 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=96.64 E-value=0.00044 Score=38.97 Aligned_cols=448 Identities=10% Similarity=0.037 Sum_probs=185.3 Q ss_pred HHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccC Q lcl|Aclame:pro 29 AAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSS 108 (695) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (695) ++-. ++-+ .++...-.........+.++..++|...+++. +++...+.+....++.++... +++.-. T Consensus 1 ~~~~-l~~~--~~~~~~d~~~~~e~~~~~~~s~~~p~~~dGa~--~i~~~~~~~~~~~~g~~~~~~------~~e~~~-- 67 (521) T protein:vir:65 1 MFSR-LKML--ARWADFDNDKYEEQIKDKAESIAAPKNNDGAT--EVEINDNSPASSWNSLTQQFY------STDQKI-- 67 (521) T ss_pred Cccc-hhhh--hhccCchhhHHHhhhccCCCcccCCCCCCCce--eecccCCccccccccceeeec------cccchh-- Confidence 1100 0000 00000000000000011111112222222221 111111111111111111111 111100 Q ss_pred CCCchHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh--- Q lcl|Aclame:pro 109 GFPGFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER--- 180 (695) Q Consensus 109 ~f~gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~--- 180 (695) --.+++...| ++||++..+|+.+.+||+ .....+|...-+ ..+....-.++|.++++. T Consensus 68 -~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~-------------~~~~s~~iK~kI~eeF~~Il~ 133 (521) T protein:vir:65 68 -STTKQLVNTYRGLMNNHEVENAVQNIVNDAIVFEEGHEVVSLNLE-------------ATGFSESVKERIHEEFKDLLN 133 (521) T ss_pred -hhHHHHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEec-------------ccccchHHHHHHHHHHHHHHH Confidence 0124555555 469999999999998874 233333322111 122333444456666554 Q ss_pred -hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecc-cc-cccccCC Q lcl|Aclame:pro 181 -LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSI-NP-VADDFYK 257 (695) Q Consensus 181 -l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~-dp-~s~~yg~ 257 (695) |+....-.+.++.--..|+-+.-..++ .++ +.+|+.++-+||..+........ |+ ....++. T Consensus 134 ll~F~~~~~~~fR~WYVDgRi~fhkiid-~~p--------------k~GI~ELr~lDPr~i~~vr~i~k~~~~~~~v~~~ 198 (521) T protein:vir:65 134 TIQFDRRGQDMFRRWYVDSRIFFHKIIG-KNP--------------KDGIVELRQLDPRNLEYVREIITEDTPEGKIYKA 198 (521) T ss_pred HhccchhhhHHHhhhhhcceeEEEEEEc-CCc--------------cccceeeeeeCCcceeeeeeecccccCCcceecc Confidence 455666666666444566666556554 221 22455566666665544322110 10 0001111 Q ss_pred ce----------eEEEcc--------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHH Q lcl|Aclame:pro 258 PS----------TWWMIG--------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVK 319 (695) Q Consensus 258 P~----------~y~i~~--------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~ 319 (695) -. .|...| .+|+.+=+.--..+- .+.....=.|.|.++...+.+.-.... |-+++ T Consensus 199 ~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dAI~y~hSGl-----~d~~~~~i~syLhkAiKp~NQLkm~ED--AlVIY 271 (521) T protein:vir:65 199 TKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSAITYAHSGL-----MDCDDKYIIGYLHRAVKPANQLKLLED--AMVVY 271 (521) T ss_pred eeeeeeeecCCcceeccceeecCCcceeechhheeeeeccc-----eeCCCCeeeecchhhhHhHHhhHHHHh--hHHHH Confidence 11 111222 345544433211111 122222334666665555444433322 33444 Q ss_pred Hhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcC-------------CceeEEE----------EcCCceeEEEe Q lcl|Aclame:pro 320 QFS----VSGILMDLAQALMPGANVDLSMRAELINRYRD-------------NRNILFL----------DKATEEFFQFN 372 (695) Q Consensus 320 ~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~-------------n~~~~~l----------d~~~e~~~~~~ 372 (695) +.+ =.|+-+|..+.-...++.=|. ++++.+|+ +..-+-| ++-.-+++++. T Consensus 272 RitRAPeRRvFYIDvGnlPk~KAeqYl~---~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLp 348 (521) T protein:vir:65 272 RITRAPERRVFFIDTGNMNNRKAAQHMN---SVAQSFKNRVVYDASTGKLKNQQANLSMTEDYWLQRRDGKAITDVTTLP 348 (521) T ss_pred hhhccccceEEEEecCCCCchhHHHHHH---HHHHhcCceeEeecccccccccccccchhhhhcccccCCCCccceeecc Confidence 433 234444432221111111111 11222221 1111111 01123466664 Q ss_pred --cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc--Ccch--HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh Q lcl|Aclame:pro 373 --TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSE--GEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSL 446 (695) Q Consensus 373 --~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~ 446 (695) .+|+.++|+ .-|...+=-+.++|+++|-.++.+||| .++| -|.-.|...|..+|.. +...+..++..-...+ T Consensus 349 Ggqnlgem~DV-~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRDEiKF~KFI~rLR~r-Fs~lf~~~L~~qLilK 426 (521) T protein:vir:65 349 GASGMSDIDDI-RYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFSKFIRTLQSQ-FSEVLRDPLKYNLILK 426 (521) T ss_pred cCCCcChHHHH-HHHHHHHHHHhCCCceeccCCCCcceeccccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh Confidence 467777776 567777889999999999555666775 3444 2556799999998866 4555555444322112 Q ss_pred -------cCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhh--hhcchhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 447 -------FGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQ--EQVIRPDQVAARLNTEPDGPYAGKLDANDDPG 517 (695) Q Consensus 447 -------~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~--~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~ 517 (695) |-.+-+.+.|.|.-=..-++-..+++......+.+.+-. .-.++.+.+++.+....+............+. T Consensus 427 giit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~k~I~~E~ 506 (521) T protein:vir:65 427 NVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQMDTEKKQIEEEA 506 (521) T ss_pred cCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHhh Confidence 222334588999988888888888888777766655422 11234444444333222211111111100000 Q ss_pred hhhhh--hhhhhhhh Q lcl|Aclame:pro 518 VPADD--DIDGVLTY 530 (695) Q Consensus 518 ~~~~~--~~~~~~~~ 530 (695) ..... .......+ T Consensus 507 ~~~~~~~p~~~~~~f 521 (521) T protein:vir:65 507 NDPRFKQTPDEIEDF 521 (521) T ss_pred hCCCCCCCcccccCC Confidence 00000 00000000 No 204 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=96.62 E-value=0.00046 Score=38.88 Aligned_cols=430 Identities=11% Similarity=0.025 Sum_probs=169.0 Q ss_pred HHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCch Q lcl|Aclame:pro 34 ATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGF 113 (695) Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy 113 (695) ++.++++|.|+....+...++. .+ ....+..+ ..++.. +...+++.| T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~------~~--~~~~~~~~-----e~~~~l------------r~~~~~~ly-------- 47 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGV------VD--GWTVWDPF-----EQTPEL------------QWPQSVAVY-------- 47 (469) T ss_pred CCCcccCCCCccchhhhhhccc------cc--chhhcccc-----cccccc------------ccccchHHH-------- Confidence 6666677766632221100000 00 00000000 000000 000111111 Q ss_pred HHHHHH-HhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhh----------- Q lcl|Aclame:pro 114 PTLVLL-AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERL----------- 181 (695) Q Consensus 114 ~~~a~~-~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l----------- 181 (695) ..+ ....-+..+++..-.-.++.-++|... +.+.+..+.+.+.++.. T Consensus 48 ---~~m~e~D~~i~s~l~~rk~av~~~~w~v~p~------------------~~~~e~~~~~~~~L~~~~~~~~~~~~~~ 106 (469) T protein:vir:10 48 ---SRMDNEDSRVTSLLEAISLPIRSTPWRIRAN------------------GASDEVTEFVSRNLMVPIDGEDDVRNPG 106 (469) T ss_pred ---HHHHhhChHHHHHHHHHHHHHhcCCceEecC------------------CCCHHHHHHHHHHHHhhhhhhhhhhhhh Confidence 112 234444444444333333332333211 12334444444444322 Q ss_pred ------chHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecch-----hcccc----cee Q lcl|Aclame:pro 182 ------RIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPY-----WVTPN----NYN 246 (695) Q Consensus 182 ------~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~-----~i~p~----~~~ 246 (695) ...+.|.+.+-.+..||.++.=+.-..++.. ... .+ .++.|....+. .+.+. ... T Consensus 107 ~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~-~dG------~~---~~~~l~~rp~~~i~~~~~~~~~~l~~~~ 176 (469) T protein:vir:10 107 RSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQS-PDG------RF---WLRKLAPRPQWTISKFNVAPDGGLESIE 176 (469) T ss_pred hhhccccHHHHHHHHHHHhhhhCceeeeeeeeccccc-CCC------ce---eeeeeeecCcccceeeeeccCCceeeee Confidence 2345677777767779999886654322110 000 00 11222222221 11110 011 Q ss_pred cccccccccCCceeEEEcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--c Q lcl|Aclame:pro 247 SINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--S 324 (695) Q Consensus 247 ~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~ 324 (695) ...|..+.-+.+......+..+.+.+.|.+.... ...+.+|.|++..||-...--.....--+..+.++.+ . T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~------~~g~p~g~gLlr~~~~~~~fK~~~~~~w~~f~EryG~P~~ 250 (469) T protein:vir:10 177 QIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNK------RPGQWQGKSILRSAYKHWLLKDKLLRIEAATAERNGMGIP 250 (469) T ss_pred ecCcccccccccccCCCCccccccCcEEEEEecC------CCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcce Confidence 1111111111111222345678888887777543 2445789999999998865444455555677777664 4 Q ss_pred eeeechHHhhcchHHHHHHHHHHHHHHhcC-CceeEEEEcCCceeEEEecccCC--hHHHHHHHHHHHHhhh-cCCceee Q lcl|Aclame:pro 325 GILMDLAQALMPGANVDLSMRAELINRYRD-NRNILFLDKATEEFFQFNTPLSG--LDALQAQAQEQMSAVS-HIPLIKL 400 (695) Q Consensus 325 v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~-n~~~~~ld~~~e~~~~~~~~lsg--l~~~~~~~~~~iaaas-~iP~t~L 400 (695) +.|.+-. +. +.+...-++++..++. ..+..++. .+.+++.++.+-++ ...+++..-++||-+. |--+| T Consensus 251 vgky~~~---a~--~~ek~~l~~a~~~~~~g~~a~~iip-~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG~tlT-- 322 (469) T protein:vir:10 251 VGTASSA---TD--EDEVRKMAALARSVRGGINAGVGLA-QGQILELLGVSGNLPDIRRAIEGHDRSIALSGLAHFLN-- 322 (469) T ss_pred EEecCCC---CC--HHHHHHHHHHHHHHhcCCceEEEcc-CCceEEEeecCCCchHHHHHHHHHHHHHHHHHhccccc-- Confidence 5554411 11 1222333445555543 34445565 46789988876332 3333344444454322 11111 Q ss_pred eccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHh Q lcl|Aclame:pro 401 LGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMN-DVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQS 479 (695) Q Consensus 401 ~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~-~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~ 479 (695) .++-+|=.|.|+.-.....+.+++.... |...|+ .|+.-++.--||.....-.|+|..... ..+..++. T Consensus 323 -s~~~gGS~a~~~vh~ev~~d~~~sDa~~-i~~tln~~li~~l~~lN~g~~~~~P~~~~~~~e~--------~~~~~a~~ 392 (469) T protein:vir:10 323 -LDGKGGSYALASVLEDPFTQAVHAYATS-ICRIANQHIIEDLVDINFGVDTPAPVLTFDPIGS--------RQDLTAAA 392 (469) T ss_pred -ccCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCccEEEecCCCC--------cHHHHHHH Confidence 1222233344454455555666555433 455564 466666655566443334677754322 11234677 Q ss_pred hhhhhhhhcchhh-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchh Q lcl|Aclame:pro 480 DVLYVQEQVIRPD-----QVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPP 554 (695) Q Consensus 480 ~~~~~~~g~i~~~-----e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (695) ++++...|.+..+ .+++.+....... ................. ..+............. ..... T Consensus 393 i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 461 (469) T protein:vir:10 393 VKLLYDAGVFDDDPAVKRAIRQRFNLPSELN------DTPSAEPEEPAAVPNQS----AAPARTRSSGNADARA-RAPKA 461 (469) T ss_pred HHHHHhcCCccCccccHHHHHHHhCCCCCCC------CcccccchhcccCCCCC----ccccccCCCCCccccc-ccCCC Confidence 7888888875543 2222222211000 00000000000000000 0000000000000000 00000 Q ss_pred hhhhhhhccccccccccCceEEEEEEEEEc Q lcl|Aclame:pro 555 TVANVNANVKPREAGAQDAAMRAAGAVYVV 584 (695) Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 584 (695) .. ..+.+. T Consensus 462 ~~----------------------~~l~da 469 (469) T protein:vir:10 462 DQ----------------------GVLFDA 469 (469) T ss_pred hH----------------------HhhccC Confidence 00 000000 No 205 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=96.48 E-value=0.00058 Score=38.31 Aligned_cols=433 Identities=11% Similarity=0.061 Sum_probs=184.4 Q ss_pred CCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHH Q lcl|Aclame:pro 39 AQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVL 118 (695) Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~ 118 (695) -.++...-..+......+.+...+||...|++. ++..+...+. ..+..|+..... ...+..-++... T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p~~~DGa~--~i~~~~~~~~-~~g~~~~~~~~~----------~~~~~~~eLI~~ 67 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAPDNVDGAK--EIHTNLLAPQ-LGHAIIPSDAQS----------EGTIPVKELIKS 67 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCCCCCCCce--EEecccccce-ecceeccccccc----------cCccchHHHHHH Confidence 111111111111111111111222222222221 1111111110 011111111100 001111234444 Q ss_pred H---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh----hchHHHHHH Q lcl|Aclame:pro 119 L---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER----LRIRDAVRT 189 (695) Q Consensus 119 ~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~----l~~~~~~~~ 189 (695) | ++||++..+|+.+.+||+ ......|...- ...+....-.++|.++++. |+......+ T Consensus 68 YR~ma~~pEvd~Av~eIvne~iv~d~~~~pV~l~l-------------d~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~ 134 (511) T protein:vir:56 68 YRALAEYHEVDDAIQEIVDEAIVYENDKEVVWLNL-------------DNTDFSENIKAKINEEFDRVVSLLQMRKHGYK 134 (511) T ss_pred HHHHhhccchhhHHHHhhcceeEecCCCceEEEEe-------------cccCcchHHHHHHHHHHHHHHHHhccchhhhH Confidence 4 469999999999998874 23333332211 1122333444556666554 455666666 Q ss_pred HHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccc------------------ceeccccc Q lcl|Aclame:pro 190 TVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPN------------------NYNSINPV 251 (695) Q Consensus 190 a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~------------------~~~~~dp~ 251 (695) .++.--..|+-+--..++..+ +|+.|+-+||..+... .+-.-+|. T Consensus 135 ~fR~WYVDgRi~fHkiid~k~-----------------GI~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~ 197 (511) T protein:vir:56 135 WFRKWYVDSRIYFHKILDKDN-----------------NIIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQS 197 (511) T ss_pred HHhhhhhcceEEEEEEecccc-----------------ceeehhhcCcccchhhhhhhcccccccccccceeeeeEecCC Confidence 665433455433333333211 2222333333322211 01111232 Q ss_pred ccccCCceeEEE-----cceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhc---- Q lcl|Aclame:pro 252 ADDFYKPSTWWM-----IGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS---- 322 (695) Q Consensus 252 s~~yg~P~~y~i-----~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~---- 322 (695) + |-.|..+.. ++.+|+.+=+.....+-+ + -...++...|.|.++...+.+.-.... |-++++.+ T Consensus 198 ~--~~~~~~~~~~~~~~~~vkI~~daI~y~hSGL~-d--~~~~~g~i~syLhkAiKp~NQLkm~ED--AlVIYRitRAPe 270 (511) T protein:vir:56 198 D--YKMPSWMSATNRAQTSFRIPKDAIVFAHSGLM-R--GCADDPYIIGYLDRAIKPANQLKMLED--ALVIYRLARAPE 270 (511) T ss_pred C--cccCcccccccccccceeechhheeeecccce-e--ccCCCCeeeccchhhhHHHHhhHHHHh--hHHHHhhhcccc Confidence 2 233333332 235677766543322211 0 013445577888777666655543333 34455433 Q ss_pred cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC--------------------------CceeEEEe--cc Q lcl|Aclame:pro 323 VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA--------------------------TEEFFQFN--TP 374 (695) Q Consensus 323 ~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~--------------------------~e~~~~~~--~~ 374 (695) =.|+-+|..+.-...++ +..+ ++++.+|+ -++.|++ .-+++++. -+ T Consensus 271 RRvFYIDVGnLPk~KAe-qYl~--~iM~k~kN---klVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqn 344 (511) T protein:vir:56 271 RRVFYVDVGNLPTQKAQ-QYVN--GIMQNVKN---RVVYDTQTGQVKNTTNAMSMLEDYYLPRREGSKGTEVSTLPGGQS 344 (511) T ss_pred ceEEEEecCCCCchhHH-HHHH--HHHHhcCc---eEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCC Confidence 23444443222111111 1111 11222221 1222221 23455553 44 Q ss_pred cCChHHHHHHHHHHHHhhhcCCceeeecc-Cccccc--Ccch--HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---- Q lcl|Aclame:pro 375 LSGLDALQAQAQEQMSAVSHIPLIKLLGI-TPTGLN--ASSE--GEIRVWYDYVRAYQRNALQQLMNDVIVMIQLS---- 445 (695) Q Consensus 375 lsgl~~~~~~~~~~iaaas~iP~t~L~G~-sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s---- 445 (695) |+.++|+ .-|...+=.+.++|+++|-.+ +.+|+| .++| -|.-.|...|..+|.. +...+..++..-... T Consensus 345 lgem~DV-~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF~KFI~RLR~r-Fs~lF~~~Lk~qLilKgii 422 (511) T protein:vir:56 345 LGDIEDV-LYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELKFTKFVKRLQTK-FETVITDPLKHQLIVNNII 422 (511) T ss_pred cChHHHH-HHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccCC Confidence 6667775 567778889999999999744 346775 3333 2556799999998866 455555544432211 Q ss_pred ---hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhh--hcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 446 ---LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQE--QVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPA 520 (695) Q Consensus 446 ---~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~--g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~ 520 (695) .|-.+-+++.|.|.-=..-++-..+++......+.+.+-.- -.++.+.+++.+....+............+.... T Consensus 423 t~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~~yi~k~ILr~tDeei~~~~k~I~~E~k~~ 502 (511) T protein:vir:56 423 TEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYSHKYIQKNILRLSDDQITAMQSEIDEEETNP 502 (511) T ss_pred CHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccccchHHHHHHHhccCHHHHHHHHHHHHHhhcCC Confidence 23334457889999888888888888887777666554221 1234444444333222222111111111111110 Q ss_pred hhhhhhhhhh Q lcl|Aclame:pro 521 DDDIDGVLTY 530 (695) Q Consensus 521 ~~~~~~~~~~ 530 (695) ........ + T Consensus 503 ~~~~~e~~-f 511 (511) T protein:vir:56 503 RFQQDDQG-F 511 (511) T ss_pred CCCCcccC-C Confidence 00000000 0 No 206 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=96.35 E-value=0.00071 Score=37.84 Aligned_cols=440 Identities=9% Similarity=0.030 Sum_probs=180.4 Q ss_pred HHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhc Q lcl|Aclame:pro 27 LAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVT 106 (695) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (695) .. +++-++ ++...-.......-...+...+||...|++. ++....++ ...++.|+..+. . T Consensus 1 ~~----~~~lf~--f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~--~i~~~~~~--~~~~g~~~~~~~----------~ 60 (516) T protein:vir:10 1 MK----FLDLFK--FWDRVDQNEYDERLKLGHESIATPKKDDGAT--EIETREGE--ATYNAVMQQFFG----------I 60 (516) T ss_pred CC----chHhcc--cccchhhhHHhhhhcCCcCcccCCCCCCCce--eeecCCCc--ccccceeeeeec----------c Confidence 00 000000 0000000000000001111222222222221 11111111 111112221110 0 Q ss_pred cCCC-CchHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 107 SSGF-PGFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER 180 (695) Q Consensus 107 ~~~f-~gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 180 (695) ...| -.+++...| ++||++..+|+.+.+||+ .....+|...-+ ..+....-.++|.++++. T Consensus 61 ~~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~-------------~~~~s~~ik~kI~eeF~~ 127 (516) T protein:vir:10 61 DNNISGTKDLINTYRQLINNPEVERAVANIVNEAIVYERGHKVVSLDLD-------------DTDFGSNVKEKILEEFDE 127 (516) T ss_pred ccccchHHHHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEec-------------ccCcchHHHHHHHHHHHH Confidence 1122 124555555 469999999999998874 233333322111 122333444556666654 Q ss_pred ----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee-ccccccc-- Q lcl|Aclame:pro 181 ----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN-SINPVAD-- 253 (695) Q Consensus 181 ----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~-~~dp~s~-- 253 (695) |+....-.+.++.--..|+-+.--.++ .+ +.+|+.++-+||..+...... ..|..+. T Consensus 128 Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid-~~---------------k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v 191 (516) T protein:vir:10 128 VCRLLDASRKLDTLFRRWYVDSRIFFHKIMP-NP---------------KKGIAELRRLDPRFMEYYREIVTSDIGGTTI 191 (516) T ss_pred HHHHhccchhhhHHHhhhhhcceEEEEEEec-Cc---------------cccceeeeeeCCcceeeEeeecccccccchh Confidence 455665555555333444443222232 11 123444555555444432211 1111110 Q ss_pred -----c-c-CCc--eeEEEcc--------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHH Q lcl|Aclame:pro 254 -----D-F-YKP--STWWMIG--------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD 316 (695) Q Consensus 254 -----~-y-g~P--~~y~i~~--------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~ 316 (695) . | |.| ..|.++| .+|+.+=+. |...-+ .+...+.=.|.|.++...+.+.-.... |- T Consensus 192 ~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~-y~hSGL----~d~~~~~i~syLhkAiKp~NQLkm~ED--Al 264 (516) T protein:vir:10 192 VKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVV-YASSGL----MDCSDRGIIGYLHNAVKPANQLKLLED--AM 264 (516) T ss_pred hhhhhheeeeccCccccccccceeCCCcceeechhhee-eecccc----eeCCCCceeeeehhhhHhHHhhHHHHh--hH Confidence 0 0 111 1222333 345554432 222111 111222235556555444444332222 33 Q ss_pred HHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC--------------------------Cc Q lcl|Aclame:pro 317 IVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA--------------------------TE 366 (695) Q Consensus 317 l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~--------------------------~e 366 (695) ++++.+ =.|+-+|..+.-...++.=|. ++++.+|+ -++.|++ .- T Consensus 265 VIYRitRAPeRRvFYIDvGnlPk~KAeqYl~---~im~k~kN---klvYDa~TGev~ddrk~msMlEDyWLpRReGgrgT 338 (516) T protein:vir:10 265 VIYRITRAPERRVFYIDVGNMNNRKATEYVN---GIMQSLKN---RVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVT 338 (516) T ss_pred HHHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhcCc---eeEEeCCCCeeccchhhhhhHhhhcccccCCCCcc Confidence 444432 234444432221111111111 11112211 1122211 23 Q ss_pred eeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccc--cCcch--HHHHHHHHHHHHHHhhhhhHHHHHHHH Q lcl|Aclame:pro 367 EFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGL--NASSE--GEIRVWYDYVRAYQRNALQQLMNDVIV 440 (695) Q Consensus 367 ~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gl--natge--~D~~nyyd~i~~~Qe~~l~p~l~~l~~ 440 (695) +++++. -+|+.++|+ .-|...+=.+.++|+++|-.++...+ +.++| -|.-.|...|..+|.. +...+..++. T Consensus 339 EItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~r-Fs~lf~~~L~ 416 (516) T protein:vir:10 339 EVSSLPGAQTMGDMDDV-RWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQLQHD-FEEIFLDPLK 416 (516) T ss_pred ceeeccccCCcChHHHH-HHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHH Confidence 455553 456677775 56777788999999999977665445 44444 2556699999998866 4555555444 Q ss_pred HHHHH-------hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhh--hhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 441 MIQLS-------LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV--QEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 441 ~l~~s-------~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~--~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) .-... .|-.+-+++.|.|.-=..-++-..+++......+.+.+- ....++.+.+++.+....+........ T Consensus 417 ~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~e~k 496 (516) T protein:vir:10 417 TNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIAQEEK 496 (516) T ss_pred HhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHHHHHH Confidence 32211 233344578899998888888888888887776665543 234555555555443332222221111 Q ss_pred hhhhhhhhhhhhhhh-hhhh Q lcl|Aclame:pro 512 ANDDPGVPADDDIDG-VLTY 530 (695) Q Consensus 512 ~~~~~~~~~~~~~~~-~~~~ 530 (695) ....+.......... ...+ T Consensus 497 ~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 497 QIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred HHHHhhhCCCCCCCCccccC Confidence 111111100000000 0000 No 207 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=96.35 E-value=0.00071 Score=37.84 Aligned_cols=440 Identities=9% Similarity=0.030 Sum_probs=180.4 Q ss_pred HHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhc Q lcl|Aclame:pro 27 LAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVT 106 (695) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (695) .. +++-++ ++...-.......-...+...+||...|++. ++....++ ...++.|+..+. . T Consensus 1 ~~----~~~lf~--f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~--~i~~~~~~--~~~~g~~~~~~~----------~ 60 (516) T protein:vir:10 1 MK----FLDLFK--FWDRVDQNEYDERLKLGHESIATPKKDDGAT--EIETREGE--ATYNAVMQQFFG----------I 60 (516) T ss_pred CC----chHhcc--cccchhhhHHhhhhcCCcCcccCCCCCCCce--eeecCCCc--ccccceeeeeec----------c Confidence 00 000000 0000000000000001111222222222221 11111111 111112221110 0 Q ss_pred cCCC-CchHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh Q lcl|Aclame:pro 107 SSGF-PGFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER 180 (695) Q Consensus 107 ~~~f-~gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 180 (695) ...| -.+++...| ++||++..+|+.+.+||+ .....+|...-+ ..+....-.++|.++++. T Consensus 61 ~~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~-------------~~~~s~~ik~kI~eeF~~ 127 (516) T protein:vir:10 61 DNNISGTKDLINTYRQLINNPEVERAVANIVNEAIVYERGHKVVSLDLD-------------DTDFGSNVKEKILEEFDE 127 (516) T ss_pred ccccchHHHHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEec-------------ccCcchHHHHHHHHHHHH Confidence 1122 124555555 469999999999998874 233333322111 122333444556666654 Q ss_pred ----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee-ccccccc-- Q lcl|Aclame:pro 181 ----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN-SINPVAD-- 253 (695) Q Consensus 181 ----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~-~~dp~s~-- 253 (695) |+....-.+.++.--..|+-+.--.++ .+ +.+|+.++-+||..+...... ..|..+. T Consensus 128 Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid-~~---------------k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v 191 (516) T protein:vir:10 128 VCRLLDASRKLDTLFRRWYVDSRIFFHKIMP-NP---------------KKGIAELRRLDPRFMEYYREIVTSDIGGTTI 191 (516) T ss_pred HHHHhccchhhhHHHhhhhhcceEEEEEEec-Cc---------------cccceeeeeeCCcceeeEeeecccccccchh Confidence 455665555555333444443222232 11 123444555555444432211 1111110 Q ss_pred -----c-c-CCc--eeEEEcc--------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHH Q lcl|Aclame:pro 254 -----D-F-YKP--STWWMIG--------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD 316 (695) Q Consensus 254 -----~-y-g~P--~~y~i~~--------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~ 316 (695) . | |.| ..|.++| .+|+.+=+. |...-+ .+...+.=.|.|.++...+.+.-.... |- T Consensus 192 ~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~-y~hSGL----~d~~~~~i~syLhkAiKp~NQLkm~ED--Al 264 (516) T protein:vir:10 192 VKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVV-YASSGL----MDCSDRGIIGYLHNAVKPANQLKLLED--AM 264 (516) T ss_pred hhhhhheeeeccCccccccccceeCCCcceeechhhee-eecccc----eeCCCCceeeeehhhhHhHHhhHHHHh--hH Confidence 0 0 111 1222333 345554432 222111 111222235556555444444332222 33 Q ss_pred HHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC--------------------------Cc Q lcl|Aclame:pro 317 IVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA--------------------------TE 366 (695) Q Consensus 317 l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~--------------------------~e 366 (695) ++++.+ =.|+-+|..+.-...++.=|. ++++.+|+ -++.|++ .- T Consensus 265 VIYRitRAPeRRvFYIDvGnlPk~KAeqYl~---~im~k~kN---klvYDa~TGev~ddrk~msMlEDyWLpRReGgrgT 338 (516) T protein:vir:10 265 VIYRITRAPERRVFYIDVGNMNNRKATEYVN---GIMQSLKN---RVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVT 338 (516) T ss_pred HHHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhcCc---eeEEeCCCCeeccchhhhhhHhhhcccccCCCCcc Confidence 444432 234444432221111111111 11112211 1122211 23 Q ss_pred eeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccc--cCcch--HHHHHHHHHHHHHHhhhhhHHHHHHHH Q lcl|Aclame:pro 367 EFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGL--NASSE--GEIRVWYDYVRAYQRNALQQLMNDVIV 440 (695) Q Consensus 367 ~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gl--natge--~D~~nyyd~i~~~Qe~~l~p~l~~l~~ 440 (695) +++++. -+|+.++|+ .-|...+=.+.++|+++|-.++...+ +.++| -|.-.|...|..+|.. +...+..++. T Consensus 339 EItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~r-Fs~lf~~~L~ 416 (516) T protein:vir:10 339 EVSSLPGAQTMGDMDDV-RWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQLQHD-FEEIFLDPLK 416 (516) T ss_pred ceeeccccCCcChHHHH-HHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHH Confidence 455553 456677775 56777788999999999977665445 44444 2556699999998866 4555555444 Q ss_pred HHHHH-------hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhh--hhhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 441 MIQLS-------LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV--QEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 441 ~l~~s-------~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~--~~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) .-... .|-.+-+++.|.|.-=..-++-..+++......+.+.+- ....++.+.+++.+....+........ T Consensus 417 ~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~e~k 496 (516) T protein:vir:10 417 TNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIAQEEK 496 (516) T ss_pred HhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHHHHHH Confidence 32211 233344578899998888888888888887776665543 234555555555443332222221111 Q ss_pred hhhhhhhhhhhhhhh-hhhh Q lcl|Aclame:pro 512 ANDDPGVPADDDIDG-VLTY 530 (695) Q Consensus 512 ~~~~~~~~~~~~~~~-~~~~ 530 (695) ....+.......... ...+ T Consensus 497 ~I~~E~~~~~~~~p~~~~~f 516 (516) T protein:vir:10 497 QIEQEAGIKRFQNPENEDDF 516 (516) T ss_pred HHHHhhhCCCCCCCCccccC Confidence 111111100000000 0000 No 208 >protein:vir:101418 Length: 569 # NCBI annotation: Prt # Family: family:all:9458 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006480;genbank:gi:46401636;genbank:GeneID:2777482 Probab=95.99 E-value=0.0012 Score=36.69 Aligned_cols=501 Identities=14% Similarity=0.034 Sum_probs=177.1 Q ss_pred cChhhhHHHHHHHHHhcCCCCcccchhhcc-cccccccccccccchhhhhhhcccccCCCCcccccccccccccccccch Q lcl|Aclame:pro 21 VAKAAALAAAATIATATAAQPVPADMGRRG-ALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSM 99 (695) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (695) |+..+. .+-.+-.|+.......+. |-+ -.++..+.-+..-.-|... .|. .....-....+. ... T Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g--~p~-~~~~~~~~~~~~---------~t~ 65 (569) T protein:vir:10 1 MADNKI--TLSSVRKALAGVFKDNGE-RDNILLSALAVHGGSGYLFSRAG--APV-QLSGFLGGKPGD---------SGM 65 (569) T ss_pred CCcchh--HHHHHHHHHhhhhhcCCc-cchhhhhhheeecCcceEEeecC--cch-hhhhhhccCccc---------cch Confidence 332221 111222222222111110 101 0011110000000000000 000 000000000000 011 Q ss_pred hhhhhhccCCCCchH-----HHHHHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccc---cccccCCHHHH Q lcl|Aclame:pro 100 DALSFVTSSGFPGFP-----TLVLLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGG---NAASTSDGDQL 171 (695) Q Consensus 100 ~~~~~~~~~~f~gy~-----~~a~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~---~~~~~~~~~~~ 171 (695) .+-.++.+++|++-. ..-+++..|+.=..--++++-| .+.|+..-.-|- +.|..+-. ......+.|.. T Consensus 66 ~~D~~~~g~~~~~~~~~~pr~R~qiY~~~eeM~~~p~Ia~Al---niHVtaALggde-~TGd~vfI~p~~~~~~a~~daa 141 (569) T protein:vir:10 66 AGDGLVDGSRFIFDEVQLPEDRLQRYPLLEEMAVYSTIATAL---NIHITHALSFDK-KTGQTFSIVPVHNGNDSDYDAA 141 (569) T ss_pred hhhhHHHHHHHHhhhccCchhHHHHHHHHHHHhcCchhhhhh---hhhhheeecccc-cccceEEEEeecCCCCCcchHH Confidence 111233333333321 1223333344322222222211 112211111111 11111111 11233455666 Q ss_pred HHHHHHHHh-hc--hHHHHHHHHHhcCccceEEEEEEEcCC-------CchhccccCCccccccCcceEEEEEecchhcc Q lcl|Aclame:pro 172 KQINDEIER-LR--IRDAVRTTVIHDQAFGRAHPYFKIKGD-------DQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVT 241 (695) Q Consensus 172 ~~i~~~~~~-l~--~~~~~~~a~~~~Rl~G~~~i~i~~~~d-------~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~ 241 (695) +++.+++.. +. +.+.+-....|.-.||.++.=|-.+.+ ..++..|-.+-|-- ..|...+|...++...+ T Consensus 142 kai~~el~~dl~~~iNr~~~~lA~~~~aFGdsYaRiY~~~~~GV~dl~~s~yt~PsfIqpFE-~g~~tvGF~~~~~~~~~ 220 (569) T protein:vir:10 142 QALCGELMNDIGRTINKEVAGWAFIMSVFGVAYVRPYAKEGIGITSFECSYYTLPSFIKEFE-VSGNLAGFSGDYLKDAS 220 (569) T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhheeeeccCCceeEEEEecccccccccchhh-hcCceEEeecccCCccc Confidence 666666554 32 344555555566667766665554332 12345554433322 23456666555543333 Q ss_pred ccceecccccc-cccCCceeEEEcc-eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHH--H Q lcl|Aclame:pro 242 PNNYNSINPVA-DDFYKPSTWWMIG-TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD--I 317 (695) Q Consensus 242 p~~~~~~dp~s-~~yg~P~~y~i~~-~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~--l 317 (695) -.... .+|-+ -.+-.|..=.|.+ +.||.-..-.+--..+++.+-..-.-.|-|.|+.+++...+...+..+... + T Consensus 221 ~ti~~-l~p~qm~rmKmPrm~~i~q~~~v~~g~~~~~L~~d~~~~~Pi~psn~GgSFL~~ae~pf~~l~~Al~sL~~qri 299 (569) T protein:vir:10 221 GKMVF-ADPWAIIPMKIPYWRPKSNLMPVHTGHKAYSLLDNPEERTPIETQNYGTSLLEYAYEPYMNLRSAIRSLKATRF 299 (569) T ss_pred cceee-echhhhhhhcccceeeccccchhhhhhhheeecccccccccccchhhhhHHHHHHHhHHHHHHHHHHhccchhh Confidence 22211 12211 1233342222222 122222110111122222221112345889999999988887777665432 3 Q ss_pred HHHhccceeeech--HHhhc----chHHHHHHHHH-HHH-HHhcCCce--------eEEEEcCC-----ceeEEEecccC Q lcl|Aclame:pro 318 VKQFSVSGILMDL--AQALM----PGANVDLSMRA-ELI-NRYRDNRN--------ILFLDKAT-----EEFFQFNTPLS 376 (695) Q Consensus 318 ~~~~~~~v~k~~~--~~~l~----~~~~~~l~~r~-~~~-~~~~~n~~--------~~~ld~~~-----e~~~~~~~~ls 376 (695) +.......+-.++ ....+ ...-..+.+|. +.+ +..++-+. +-+++ +. =|..+...+.. T Consensus 300 ~dSv~~~~Itlnm~gM~p~qr~~y~r~lt~~LKr~~d~ie~a~~gg~~~~~~~~H~LPv~g-ekq~~~tvDt~~~~A~~~ 378 (569) T protein:vir:10 300 NASKIDRIIGLAMNSLDPVKAADYSRTITQTLKRAADLMERRARGANNMPTVTNTLLPIMG-DGKGQMTIDTQTIQADIN 378 (569) T ss_pred HHHHHhHHhhccccCCCHHHHhHHHHHHHHHHHHHHHHHHHHhccCccccccceeeeeeec-CccccccccccccccCcc Confidence 3333333333221 11100 00111222222 111 11221111 11121 11 12334455566 Q ss_pred ChHHHHHHHHHHHHhhhcCCceeeeccC---cccccCcchHHHHHHHHHHHHHHhhhh-h----HHHHHHHHHHHHHhcC Q lcl|Aclame:pro 377 GLDALQAQAQEQMSAVSHIPLIKLLGIT---PTGLNASSEGEIRVWYDYVRAYQRNAL-Q----QLMNDVIVMIQLSLFG 448 (695) Q Consensus 377 gl~~~~~~~~~~iaaas~iP~t~L~G~s---p~Glnatge~D~~nyyd~i~~~Qe~~l-~----p~l~~l~~~l~~s~~g 448 (695) |++|++- ...++||+.||-.|.| |=+ .+||+.+|= |.-.+.+.++..+ | ..+.+++++=+-.++| T Consensus 379 gIEdvM~-~~R~LagaLGlD~SMl-GwAD~LsGGLGeGG~-----frtSaQaa~RS~~iRqa~~e~in~iidiH~~fKYg 451 (569) T protein:vir:10 379 GIEDILT-YMRQLAAALGLDYTLL-GWADQMSGGLGEGGF-----LRTAIQAAMRASWIQQGVEEFIQRAIDIHLAFKYG 451 (569) T ss_pred cHHHHHH-HHHHHHhhhccchhHh-hHHHHhcccccccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC Confidence 7777764 4566999999999977 533 677865443 6666666655543 3 4556666665666777 Q ss_pred CC--CC--ceeEEeccccccchhHHHHHHHHHH-------Hhhhhhhhhhcchhhhhh-hhhhhhhhhhh----hhhhhh Q lcl|Aclame:pro 449 AV--DP--SIKWQWNALRELDDLEVAESRYKQA-------QSDVLYVQEQVIRPDQVA-ARLNTEPDGPY----AGKLDA 512 (695) Q Consensus 449 ~~--~~--d~~~~f~pL~~~se~e~Aei~~~~a-------~~~~~~~~~g~i~~~e~r-~~L~~~~~~~~----~~~~~~ 512 (695) +. +. -|.++|+.-.+--+.|..+.....+ |....+.++..+-.++.. ..+..+ ..+. ...... T Consensus 452 evf~~~drP~~V~F~s~~tAl~~E~~~n~~~raN~a~i~~Q~la~l~e~n~Lg~de~~m~y~l~d-~~~~De~~~e~l~a 530 (569) T protein:vir:10 452 KVYPEGDRPYKIEFHSVNTALQQEHNDNRDSQANYATIVTQILDAVSNNSVLANSDAFKRYLFSD-VLEIDEKISEALVN 530 (569) T ss_pred cccCCCCcceEEEeccchHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHH-HhhcchhHHHHHHh Confidence 65 22 3888998877665555544443333 333333333333222221 111111 1111 000000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhcccccccc Q lcl|Aclame:pro 513 NDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAG 569 (695) Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (695) +....+. ...+..... ... ++...... ............ T Consensus 531 e~~akp~-------DEe~~~~~~--~~~------~~~~~~~~---~~~~~~~~~~~~ 569 (569) T protein:vir:10 531 ELKAKSE-------DDDHLMDSI--IKT------PPQELAQI---LESVFKEGNDND 569 (569) T ss_pred hcCCCcc-------hhHHHHHHH--hcC------ChHHHHHH---HHHHhhccCCCC Confidence 0000000 000000000 000 00000000 000000000000 No 209 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=95.85 E-value=0.0014 Score=36.30 Aligned_cols=442 Identities=12% Similarity=-0.001 Sum_probs=183.0 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |...- -.....|...+.......+.-..+ ....+.. ++++ ++..-+.+ .-.-+ .++.....+....-+ T Consensus 1 m~~~i--~~~~g~p~~~~~~~~~~~~~ia~~--~~~~~~~---~~~~--~~~~~~~i--Lr~~~-~~~~~y~~m~~D~~i 68 (491) T protein:vir:10 1 MSKGL--WVSPTEFVTFGEPDKSLSSQIATR--ARSIDFF---ALGM--YLPNPDPV--LKALG-KDIRVYRELRADAHV 68 (491) T ss_pred CCCce--eCCCCCccCcccCChHHHHHHHhh--hcccccc---cccC--CccchHHH--HHhcC-CCHHHHHHHhhChHH Confidence 33311 011222222211111111111100 0111111 1111 11111111 10000 122222233345555 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFK 205 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~ 205 (695) ..+++..-.-.+..-++|... +.+....+.+.+.++++.+.+.+.+.+- +.+||.++.=+. T Consensus 69 ~s~l~~Rk~av~~~~w~i~~~------------------~~~~~~~e~v~e~l~~~~~~~~l~~~ld-a~~~G~s~~Ei~ 129 (491) T protein:vir:10 69 GGCVRRRKAAVKALEWGLDRG------------------KAKSRVAKSIADVFADLDLSRIVTEMLD-AVLYGYQPMEIT 129 (491) T ss_pred HHHHHHHHHHHhCCCcEEecC------------------CCCHHHHHHHHHHHhcCCHHHHHHHHHH-hhhhcceeEEEE Confidence 555554433333222233211 1234566778888999988888888875 889999997765 Q ss_pred EcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhh Q lcl|Aclame:pro 206 IKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDML 285 (695) Q Consensus 206 ~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~ 285 (695) -..++. .-.++.|...++.|+... +............+.|..+.+-+.|.+.... T Consensus 130 w~~~~g--------------~~~~~~l~~r~~~~f~~d------~~~~l~~~~~~~~~~g~~l~~~k~i~~~~~~----- 184 (491) T protein:vir:10 130 WGKVGN--------------YIVPIDVVGKPADWFVYD------PENQLRFRSKDHWMQGEELPARKFLVPRQEA----- 184 (491) T ss_pred EeecCC--------------eeEEEEeeeecccceeec------cCCceEEecCCCCCCcceecCCCEEEEEecC----- Confidence 432221 113455666676666432 1111111111122345667777777766543 Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccce--eeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEc Q lcl|Aclame:pro 286 KPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSG--ILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK 363 (695) Q Consensus 286 ~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v--~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~ 363 (695) ...+.+|.|++..||....--..+..--+..+.++++.+ .|.+- ..+ +++..+-++.+..+.+ .+..++. T Consensus 185 -~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~--~a~---~~ek~~l~~al~~~~~-~a~~viP- 256 (491) T protein:vir:10 185 -TYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPR--SAS---DGEKNLLLDCLEDMVQ-DAVAVVP- 256 (491) T ss_pred -CCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCC--CCC---HHHHHHHHHHHHHHhc-CcEEEec- Confidence 234578999999999988777777777788888888654 45431 111 2233344455555544 4556666 Q ss_pred CCceeEEEecccC-C----hHHHHHHHHHHHHhh-hcCCceeeeccCcccccCcchHHHHHHHHHHHHHHhhhhhHHHHH Q lcl|Aclame:pro 364 ATEEFFQFNTPLS-G----LDALQAQAQEQMSAV-SHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMND 437 (695) Q Consensus 364 ~~e~~~~~~~~ls-g----l~~~~~~~~~~iaaa-s~iP~t~L~G~sp~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~~ 437 (695) .+.+++.++..-+ | ...+++..-++|+-+ .|--+| .++ +|=+|.|+--....-+.+++.. ..+...|++ T Consensus 257 ~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlT---t~~-~gs~a~~~vh~~v~~di~~~D~-~~i~~tln~ 331 (491) T protein:vir:10 257 DDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALLGQNQT---TEA-TSTRASAQAGLEVTDDIRDGDK-AVVSEAMNM 331 (491) T ss_pred CCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHhhhhcc---cCc-ccchhHHHHHHHHHHHHHHHHH-HHHHHHHHH Confidence 4788999887542 2 344555555666633 222222 112 2333445544455555555553 345666777 Q ss_pred HHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhc-chhhhhhhhhhhhhh------------h Q lcl|Aclame:pro 438 VIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQV-IRPDQVAARLNTEPD------------G 504 (695) Q Consensus 438 l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~-i~~~e~r~~L~~~~~------------~ 504 (695) ++.-++.--|+..+ ...|.|....+.. +.+ ++.+.++++.|. ++...+++.+..... . T Consensus 332 li~~l~~~N~~~~~-~p~f~~~~~~e~~-~~~-------a~~~~~L~~~G~~i~~~~i~e~~Gip~~~~~~~~~~~~~~~ 402 (491) T protein:vir:10 332 LIRWICDLNFDGAD-RPVFDMWEQEQVD-EIQ-------AGRDQKLTQAGARFTPAYFKRAYNLQDGDLDERPLPVSAVD 402 (491) T ss_pred HHHHHHHhcCCCCC-cceEEecCcCchh-HHH-------HHHHHHHHhCCCcCCHHHHHHHhCCCCCCcCccccccCCCC Confidence 77766655565332 3456665433221 333 444444444443 222222222221000 0 Q ss_pred -------------------hhhhhhhhhhhhhhh-hhhhhh-hhhhhhhhhhhhccc-ccccccCCCc---cchhh---h Q lcl|Aclame:pro 505 -------------------PYAGKLDANDDPGVP-ADDDID-GVLTYVQRLAEGGDT-GAPGGARAGA---TAPPT---V 556 (695) Q Consensus 505 -------------------~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~---~ 556 (695) ............... ...... ..-..+......... .......... ..... . T Consensus 403 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~e~~~~L~~l~~~~d~~~l~~~l~~a~~~ 482 (491) T protein:vir:10 403 TVGAASFAEFEAPDQDALDAALNTLSARDLNADAQALVAPLLKRIANGASADELLGMLAELYPSLDADALQERLARAIFV 482 (491) T ss_pred CcccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH Confidence 000000000000000 000000 000000000000000 0000000000 00000 0 Q ss_pred hhhhhcccc Q lcl|Aclame:pro 557 ANVNANVKP 565 (695) Q Consensus 557 ~~~~~~~~~ 565 (695) ......... T Consensus 483 A~l~G~~~a 491 (491) T protein:vir:10 483 ANLWGRLHA 491 (491) T ss_pred HHHhhhccC Confidence 000000000 No 210 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=95.76 E-value=0.0015 Score=36.07 Aligned_cols=449 Identities=10% Similarity=0.074 Sum_probs=187.1 Q ss_pred hhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhh Q lcl|Aclame:pro 25 AALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSF 104 (695) Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (695) --...+-.+++-+. ++...-.......-.+.++..+||...|++ .++..+..+ ...++.+...+... + T Consensus 1 ~~~~~~~~~l~~~~--~~~~~d~~~~~~~~~~~~~s~~~p~~~dGa--~~i~~~~~~--~~~~g~~~~~y~~~-----e- 68 (524) T protein:vir:98 1 MNFLGFGNVLSFFK--NFAREDEIELEQQLKNDTGSVAPPKNNDGA--YEIETDLNN--QKYAGVFQQFYSGQ-----D- 68 (524) T ss_pred CCCcchhhHHHHhh--hhhhhhhhhHhhhhcCCcccccCCCCCCCc--eeecCCCCc--ceecceeeeecccc-----c- Confidence 00111111111100 000000000000001111111222222221 111111111 11111111101000 0 Q ss_pred hccCCCC-chHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHH Q lcl|Aclame:pro 105 VTSSGFP-GFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEI 178 (695) Q Consensus 105 ~~~~~f~-gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 178 (695) +.+. .+++...| ++||++..+|+.+.+||+ ......|... + ...+....-.++|.+++ T Consensus 69 ---~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaIv~~~~~~pV~l~--------L-----~~~~~s~~iK~kI~eeF 132 (524) T protein:vir:98 69 ---PAIQNKEQLINTYRGIMSYPEVENAVSEIIDDAIVNEQGKDIITMD--------L-----AKTNFSKAIQDKIVEEF 132 (524) T ss_pred ---cccchHHHHHHHHHHHhhccchhhHHHhhhcceeEecCCCceEEEE--------e-----cccccchHHHHHHHHHH Confidence 0111 35555555 469999999999998873 2233332221 1 11222334444566665 Q ss_pred Hh----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceec---cccc Q lcl|Aclame:pro 179 ER----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNS---INPV 251 (695) Q Consensus 179 ~~----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~---~dp~ 251 (695) +. |+....-.+.++.--..|+-+.-..++.+++ + +|+.++-+||..+....... .|.. T Consensus 133 ~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~~~--------------k-GI~ELr~lDPr~i~~vr~~~~~~~~~~ 197 (524) T protein:vir:98 133 DNVLNIYDFDNMGARLFRDWYVDSRIYFHKIMHKDES--------------K-GIRELRQLDPRCMELIRESITETLDGG 197 (524) T ss_pred HHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCCC--------------c-ceeeeeeeCCccceeeeeccccccccc Confidence 54 4556666666664445666665565542211 1 35566666666654321100 0111 Q ss_pred ccccC-----------------CceeEEEc-ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHH Q lcl|Aclame:pro 252 ADDFY-----------------KPSTWWMI-GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQS 313 (695) Q Consensus 252 s~~yg-----------------~P~~y~i~-~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~ 313 (695) ...|. .+.+|..+ +.+|+.+=++....+-++. +..=+|.|.++...+.+.-.... T Consensus 198 ~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAIvy~hSGL~d~------~~~iisyLhkAiKp~NQLkm~ED- 270 (524) T protein:vir:98 198 VKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIPRSAIVYAHSGLEDC------SNNIIGYLHRAVKPANQLRLLED- 270 (524) T ss_pred hhhccceeeeeeeccCCCccccccceecCCCceeechhheeeeccCcccC------CCCeeeehhHhhHhHHhhHHHHh- Confidence 11111 11112111 2467777765544443321 11125777766555554433332 Q ss_pred HHHHHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhc-------------CCceeEEE----------EcCCc Q lcl|Aclame:pro 314 VSDIVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYR-------------DNRNILFL----------DKATE 366 (695) Q Consensus 314 ~~~l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~-------------~n~~~~~l----------d~~~e 366 (695) |-++++.+ =.|+-+|..+.-...++.=|. ++++.+| ++..-+-| .+-.- T Consensus 271 -AlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~---~im~k~kNklvYDa~TGevrddrk~msMlEDyWLpRReGgrgT 346 (524) T protein:vir:98 271 -AMVIYRITRAPERRVFYIDVGQMGGNKATQYVN---NIAQGLKNRVVYDARTGTVKNQQNNLSMTEDYWLMRRDGKAIT 346 (524) T ss_pred -hHHHHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhcCceeEeeccCceeeccccccchhhhhcccccCCCCcc Confidence 34455433 244445433221111111111 1122222 22211111 01123 Q ss_pred eeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc--Ccch--HHHHHHHHHHHHHHhhhhhHHHHHHHH Q lcl|Aclame:pro 367 EFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSE--GEIRVWYDYVRAYQRNALQQLMNDVIV 440 (695) Q Consensus 367 ~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~p~l~~l~~ 440 (695) +++++. -+|+.++|+ .-|...+=-+.++|+++|- ++.+|+| .++| -|.-.|...|..+|.. +...+..++. T Consensus 347 EItTLpggqnlgem~DV-~YF~kkLy~aLnVP~sRl~-~~~~~f~~Gr~~EItRDEiKF~KFI~rLR~r-Fs~lf~~~L~ 423 (524) T protein:vir:98 347 EVSTLPGGQNFSDMDDI-KWFNRKLYEALRVPLSRMP-RDDGGMQIGGGGEITRDELKFSKFIRTLQIQ-FSPVLSDPLK 423 (524) T ss_pred ceeeccccCCcChHHHH-HHHHHHHHHHhCCCceecc-CCCCccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHH Confidence 456663 456677775 5677778899999999993 2234444 4443 2556799999998866 4555555444 Q ss_pred HHHHHh-------cCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhh--hhcchhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 441 MIQLSL-------FGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQ--EQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 441 ~l~~s~-------~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~--~g~i~~~e~r~~L~~~~~~~~~~~~~ 511 (695) .-...+ |-.+-+.+.|.|.-=..-++-..+++......+.+.+-. .-.++.+.+++.+....+........ T Consensus 424 ~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDeei~~~~k 503 (524) T protein:vir:98 424 TNLIAKKIITEDEWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVEGVVGKYVSHKYIMKEILRMSDEDIDEQAK 503 (524) T ss_pred HhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHhccCHHHHHHHHH Confidence 322112 222334588999988888888888888777766655432 12344444444333222211111110 Q ss_pred hhhhh--hhhhhhhhhhhhhh Q lcl|Aclame:pro 512 ANDDP--GVPADDDIDGVLTY 530 (695) Q Consensus 512 ~~~~~--~~~~~~~~~~~~~~ 530 (695) ....+ .............+ T Consensus 504 ~I~~E~k~~~~~~p~~e~~~f 524 (524) T protein:vir:98 504 LIEEESKEERFKNPEAEEENF 524 (524) T ss_pred HHHHHHhCCCCcCCccccccC Confidence 00000 00000000000000 No 211 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=95.52 E-value=0.0019 Score=35.48 Aligned_cols=433 Identities=7% Similarity=-0.053 Sum_probs=169.8 Q ss_pred hhhh---hcccccCCCCcccccccccccccccccchhhhhhhccCCCCc------hH-HHHHHH-hChhhhhHhhcchHH Q lcl|Aclame:pro 67 LRLA---RQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPG------FP-TLVLLA-QLPEYRAMHEVLADE 135 (695) Q Consensus 67 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g------y~-~~a~~~-~~~~~r~~v~~~a~d 135 (695) +..+ +++-..--.+.|+............... .....+.+-++.+ |. -+.... ..++.+.||+..|+= T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~l 79 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVP-DNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEY 79 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcc-cchhhhhhhhhhhhhcccCCCCccccccccCChHHHHHHHHHHh Confidence 1111 1111111112222111100000000000 0000000000000 00 000000 122344444444433 Q ss_pred HhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEcCCCc--hh Q lcl|Aclame:pro 136 CIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQ--IM 213 (695) Q Consensus 136 ~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~--~~ 213 (695) ++-+--.| ++.+. ....++...+.|+..++..+++..+.+++..+--.||+++-+.++++.. .+ T Consensus 80 l~~e~~~i-------------~v~~~-~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~~ 145 (518) T protein:vir:78 80 ISGKPLSI-------------DVTGV-NGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILNGRPSISV 145 (518) T ss_pred hcCCCceE-------------EecCc-cccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEECCeeEEEE Confidence 33322121 11111 1123444566788888888999999999998888888876554432111 01 Q ss_pred ccccCCccccccCcceEEEEEecchhcccc---cee---cccccc-----cccCCceeEEEcce--------EE------ Q lcl|Aclame:pro 214 DTPLVPRPYTVPKGSFQGLRVVEPYWVTPN---NYN---SINPVA-----DDFYKPSTWWMIGT--------EV------ 268 (695) Q Consensus 214 ~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~---~~~---~~dp~s-----~~yg~P~~y~i~~~--------~i------ 268 (695) -.|-..-|.. ..|.+..+.-+... .... .|. .-.+.. -.|+ .|.|..+ .+ T Consensus 146 v~ad~~~P~~-~~g~~~~~~f~~~~-~~~~k~~~y~~lE~he~~~~~~~~~~~~---~~~I~n~ly~~~~~~~v~~~~~~ 220 (518) T protein:vir:78 146 HSSSQFWIDF-KNNEPFRFNFFEEI-PTSNKADIYYLVESREIKQWDKEGKKLS---GGFVTYSVIKIDGDKTTPISAER 220 (518) T ss_pred EcCCeeEEEe-ecCcEEEEEEEEEe-ecCCcceeEEEEEeeccccccceeeccc---ceeEEEEEeeecCcccccccccc Confidence 1110000110 12233332221110 0000 000 000000 0000 1112110 00 Q ss_pred ---------chhh----EEEecCCcchhh--h-------hcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcccee Q lcl|Aclame:pro 269 ---------HATR----LHTIVSRPVGDM--L-------KPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGI 326 (695) Q Consensus 269 ---------H~SR----li~~~~~~~p~~--~-------~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~ 326 (695) ++.- .....|.+.|.. . +....-+|+|++..+.+.+..++.+......-+......++ T Consensus 221 ~~~~l~~~~~~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~ 300 (518) T protein:vir:78 221 LPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIA 300 (518) T ss_pred cccccccccccccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHhCCceee Confidence 0000 001111111110 0 11123469999999999999999999888887655444444 Q ss_pred eec-hHHhh-cchHHHHHHHHHHHHHHhcCCcee-EEE----EcC---CceeEEEecccC--ChHHHHHHHHHHHHhhhc Q lcl|Aclame:pro 327 LMD-LAQAL-MPGANVDLSMRAELINRYRDNRNI-LFL----DKA---TEEFFQFNTPLS--GLDALQAQAQEQMSAVSH 394 (695) Q Consensus 327 k~~-~~~~l-~~~~~~~l~~r~~~~~~~~~n~~~-~~l----d~~---~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~ 394 (695) --. ++..- .+++.... ..++ ..... ..+ |.+ .+.++.++..+- .....++.++..+...+| T Consensus 301 v~~~~l~~~~~~~~~~~~----~~fd---~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G 373 (518) T protein:vir:78 301 ASERMFRKKVNKSTDKEE----WSMN---VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSG 373 (518) T ss_pred echhHhccCCCCCCCccc----cccC---CCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhC Confidence 322 22211 11111100 0011 01111 111 111 123677766543 467777888888888888 Q ss_pred CCceeeeccCcccccCcchH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---cC---C--C--CCceeEEeccc Q lcl|Aclame:pro 395 IPLIKLLGITPTGLNASSEG---EIRVWYDYVRAYQRNALQQLMNDVIVMIQLSL---FG---A--V--DPSIKWQWNAL 461 (695) Q Consensus 395 iP~t~L~G~sp~Glnatge~---D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~---~g---~--~--~~d~~~~f~pL 461 (695) ++-..| |.+. |. .|+.+ +..--|.++..+| ..++..|++++..++.-. ++ . . +.+++|.|++. T Consensus 374 ~s~~tf-g~~~-~~-~TATei~s~~~~~~~t~~~~~-~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~ 449 (518) T protein:vir:78 374 YNPATF-NLGN-RE-VKATEIWSLQDATVRKIEKKK-RLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDP 449 (518) T ss_pred CChhhc-Cccc-cc-ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCC Confidence 887765 7652 32 44442 2333566777765 447888888877665321 11 1 1 23589999999 Q ss_pred cccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccc Q lcl|Aclame:pro 462 RELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTG 541 (695) Q Consensus 462 ~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (695) -..++.+++++.. ..+.+|+++..+....+. ..........+....................+ T Consensus 450 i~~D~~~~~~~~~-------~~v~aGimS~e~~i~~~~----~~~~deea~~e~~ri~~E~~~~~~~~p~~~~g------ 512 (518) T protein:vir:78 450 MSVNLNELSSTLN-------NMNSALAMSVEEKVKLIH----PKWEDEEIQAEVKRIYLENAIGEVPDPEAIGG------ 512 (518) T ss_pred CCCCHHHHHHHHH-------HHHhcCCCCHHHHHHHhC----CCCCHHHHHHHHHHHHHHhcccCCCCCccccC------ Confidence 8888888766544 344456666555433221 00000000000000000000000000000000 Q ss_pred cccccCC Q lcl|Aclame:pro 542 APGGARA 548 (695) Q Consensus 542 ~~~~~~~ 548 (695) +..... T Consensus 513 -~~~~~g 518 (518) T protein:vir:78 513 -METKGG 518 (518) T ss_pred -CCCCCC Confidence 000000 No 212 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=95.33 E-value=0.0023 Score=35.06 Aligned_cols=441 Identities=9% Similarity=0.002 Sum_probs=181.2 Q ss_pred HHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhc Q lcl|Aclame:pro 27 LAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVT 106 (695) Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (695) .. +++-++ ++...-.......-.+.+...+||...|++. ++..+ ..+...++.|+..+... T Consensus 1 ~~----~~~lf~--f~~~~d~~~~~~~~~~~~~s~~~p~~~DGa~--~i~~~--~~~~~~~g~~~~~~d~~--------- 61 (516) T protein:vir:10 1 MK----FLDLFK--FWDRVDQNEYDERLKQGHESIATPKKDDGAT--EIEAR--EGESSYNALMQQFFGID--------- 61 (516) T ss_pred CC----chHhcc--cccchhhHHHHhhhcCCCCcccCCCCccCce--eeecC--cccccccceeeeeeccc--------- Confidence 00 000000 0000000000000011112222333333222 11111 11111222222211100 Q ss_pred cCCCCchHHHHHHH---hChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh- Q lcl|Aclame:pro 107 SSGFPGFPTLVLLA---QLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER- 180 (695) Q Consensus 107 ~~~f~gy~~~a~~~---~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~- 180 (695) +..--.+++...|+ +||++..+|+.+.+||+ .....+|...-+ ..+....-.++|.++++. T Consensus 62 ~~~~~~~~LI~~YR~ma~~pEvd~Av~eIvneaiv~d~~~~pV~l~l~-------------~~e~s~sik~kI~eeF~~I 128 (516) T protein:vir:10 62 NNISGTKDLINTYRQLTNNPEVERAVANIVNEAVVYEKGHKVVSLDLD-------------DTEFSSSIKDKILEEFDEI 128 (516) T ss_pred CccccHHHHHHHHHHhhhccchhHHHHHhhcceeEecCCCceEEEEec-------------ccccchHHHHHHHHHHHHH Confidence 00011255666654 69999999999998874 334343332111 122334444556666654 Q ss_pred ---hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecc-cccc-c-- Q lcl|Aclame:pro 181 ---LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSI-NPVA-D-- 253 (695) Q Consensus 181 ---l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~-dp~s-~-- 253 (695) |+....-.+.++.--..|+-+.--.++ ++ +.+|+.++-+||..+........ |..+ . T Consensus 129 l~ll~F~~~~~~~fR~WYVDgRi~fhKiid--~~--------------k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~ 192 (516) T protein:vir:10 129 CRLLDASRKLDTLFRRWYIDSRIFFHKIMP--NP--------------KEGIVELRRLDPRHVEYYREIVTSDVGGTSVV 192 (516) T ss_pred HHHhccchhhhHHHHhhhhcceEEEEEEec--Cc--------------ccceeeeeeeCCcceeeEEeeecccCcchhhh Confidence 455655555555333444433222232 11 12455555556555544222110 1000 0 Q ss_pred -------ccCC-ceeEEEcc--------eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHH Q lcl|Aclame:pro 254 -------DFYK-PSTWWMIG--------TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDI 317 (695) Q Consensus 254 -------~yg~-P~~y~i~~--------~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l 317 (695) .|.. -.+|.++| .+|+.+=+.--..+ + .+.....=.|.|.++...+.+.-.... |-+ T Consensus 193 ~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~daI~y~hSG-l----~d~~~~~i~syLhkAiKp~NQLkm~ED--AlV 265 (516) T protein:vir:10 193 KGYREFFVYTTGNEGYAYNGRLFEPNTRIKIPRSAIVYAHSG-L----QDCSDRGIVGYLHNAVKPANQLKLLED--ALV 265 (516) T ss_pred hceeeeeeeecCccceeccccccCCCCceecchhheeeeecC-c----ccCCCCceeceehhhhHhHHhhHHHHh--hHH Confidence 0110 02233333 23444332211111 1 111111224556555444444332222 334 Q ss_pred HHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC--------------------------Cce Q lcl|Aclame:pro 318 VKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA--------------------------TEE 367 (695) Q Consensus 318 ~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~--------------------------~e~ 367 (695) +++.+ =.|+-+|..+.-...++.=|. ++++.+|+ -++.|++ .-+ T Consensus 266 IYRitRAPeRRvFYIDVGnLPk~KAeqYl~---~iM~k~KN---klvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTE 339 (516) T protein:vir:10 266 IYRITRAPERRVFYIDVGNMPNRKATEYVN---GIMQSLKN---RVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTE 339 (516) T ss_pred HHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhcCc---eeEEeCCCCeeccchhhhhhHhhhcccccCCCcccc Confidence 44432 234444432221111111111 11122211 1122211 234 Q ss_pred eEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccc--cCcchH--HHHHHHHHHHHHHhhhhhHHHHHHHHH Q lcl|Aclame:pro 368 FFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGL--NASSEG--EIRVWYDYVRAYQRNALQQLMNDVIVM 441 (695) Q Consensus 368 ~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gl--natge~--D~~nyyd~i~~~Qe~~l~p~l~~l~~~ 441 (695) ++++. -+|+-++|+ .-|...+=-+.++|+++|-.++...+ +.++|= |.-.|...|..+|... ......+++. T Consensus 340 ItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rF-s~lF~~~L~~ 417 (516) T protein:vir:10 340 VTSLPGAQTMGEMDDV-RWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDELDFRKFIVQLQHNF-EEIFLDPLKT 417 (516) T ss_pred eeeccccCCcChHHHH-HHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHH Confidence 55553 446667775 56777788999999999977665445 445542 4466889999888653 4444333332 Q ss_pred H-H------HHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhh--hhhcchhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 442 I-Q------LSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV--QEQVIRPDQVAARLNTEPDGPYAGKLDA 512 (695) Q Consensus 442 l-~------~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~--~~g~i~~~e~r~~L~~~~~~~~~~~~~~ 512 (695) - + ...|-.+-+++.|.|.-=..-++-..+++......+.+.+- ....++.+.+++.+....+......... T Consensus 418 qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~ 497 (516) T protein:vir:10 418 NLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGKYVSHDYVMKNILQMTDEQIAQEEKQ 497 (516) T ss_pred HhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhHHHHHHHH Confidence 1 1 11233344578899998888888888888887776665543 2345555555554433322222211111 Q ss_pred hhhhhhhhhhhhhh-hhhh Q lcl|Aclame:pro 513 NDDPGVPADDDIDG-VLTY 530 (695) Q Consensus 513 ~~~~~~~~~~~~~~-~~~~ 530 (695) ...+.......... ...+ T Consensus 498 I~~E~~~~~~~~p~~e~~f 516 (516) T protein:vir:10 498 IEKEANVKRFQNPENEDDF 516 (516) T ss_pred HHHhhhCCCCCCCCccccC Confidence 11111110000000 0000 No 213 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=95.13 E-value=0.0027 Score=34.67 Aligned_cols=457 Identities=13% Similarity=0.114 Sum_probs=186.8 Q ss_pred HHHHHHHhcCCCCcccchhhccccccccc-----ccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhh Q lcl|Aclame:pro 29 AAATIATATAAQPVPADMGRRGALNALDA-----APVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALS 103 (695) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (695) +++++ =.|+..+. .+.++|+...++. . ...+++.++.. ... T Consensus 1 ~~~~l----------------fg~~i~~~~~~~~~~s~~~~~~~dg~----------~-~~~~~~~~g~~-~~~------ 46 (537) T protein:vir:10 1 MAQQL----------------FGFSLQRAKKVPKGPSFVQKDSLDGS----------Q-PIVGGGYFGYS-VDF------ 46 (537) T ss_pred Ccccc----------------ccceeecccccccCCcccCCCccccc----------c-eeecccccccc-ccc------ Confidence 00000 01111111 1111121111111 1 11111112211 000 Q ss_pred hhccCCCC-chHHHHHHH---hChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHH Q lcl|Aclame:pro 104 FVTSSGFP-GFPTLVLLA---QLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDE 177 (695) Q Consensus 104 ~~~~~~f~-gy~~~a~~~---~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~ 177 (695) -+.|. .+++...|+ +||++..+|+.+.+||+ ...-..|...-++ .+....-.++|.++ T Consensus 47 ---e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~i~Ld~-------------~~~s~~iK~kI~eE 110 (537) T protein:vir:10 47 ---DGTIRNDHELITRYREMVLNPECDSAVDDVVNETICGNFDDVPISIDLHN-------------LKQSEKIKKLIRSE 110 (537) T ss_pred ---ccccchHHHHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEecc-------------cccchHHHHHHHHH Confidence 01222 356666665 69999999999988874 2333333221111 11122333445555 Q ss_pred HHh----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccce-------- Q lcl|Aclame:pro 178 IER----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNY-------- 245 (695) Q Consensus 178 ~~~----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~-------- 245 (695) ++. |++.....+.++.--..|+-+.-..++..+ .+.+|+.++-+||..+..... T Consensus 111 F~~Il~ll~F~~~~~e~fR~WYVDgRi~fhKiid~k~--------------pk~GI~ELr~lDPr~i~~vR~i~~~~~~~ 176 (537) T protein:vir:10 111 FDEILRLLDFDNRAYEIFRRWYVDGRLFFHKVIDPKK--------------PRQGLVELRYVDPRKIRKVTEYEAKRPEA 176 (537) T ss_pred HHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCC--------------ccccceeeeeeCCccceeeEeecccCCcc Confidence 554 455666666666433455444333343221 112445555555555533211 Q ss_pred -ecccccccc-------c-CCceeEEEc---ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHH Q lcl|Aclame:pro 246 -NSINPVADD-------F-YKPSTWWMI---GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQS 313 (695) Q Consensus 246 -~~~dp~s~~-------y-g~P~~y~i~---~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~ 313 (695) ...+-...- | |.|..+..+ +.+|+.+=+. |...-+ .........|.|.++...+.+.-.... T Consensus 177 ~~~~~~~~~v~~~~~eyf~ynp~g~~~~~~~~vkI~~dAI~-y~hSGl----~d~n~~~i~syLhkAiKp~NQLkm~ED- 250 (537) T protein:vir:10 177 LRTQDLNQQLTQQSASYFLYNPKGLKNSTNQGMKIAPDSIA-YCHSGI----QDLNKNMVLSHLHKAIKAVNQLRMIED- 250 (537) T ss_pred ceEEecceeeeecccceeeeccccccccCCCceeccHhhee-eecccc----eeCCCCeeeeeehhhhHHHHhhHHHHh- Confidence 111111111 1 233222222 3466665433 333222 223345567878776665555443333 Q ss_pred HHHHHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC------------------------- Q lcl|Aclame:pro 314 VSDIVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA------------------------- 364 (695) Q Consensus 314 ~~~l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~------------------------- 364 (695) |-++++.+ =.|+-+|..+.-....+.=|. ++++.+| +-++.|++ T Consensus 251 -AlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr---~iM~k~K---NklVYDa~TGev~ddrk~msMlEDyWLPRReGg 323 (537) T protein:vir:10 251 -SLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLR---EVMGRYR---NKLVYDANTGEIKDDKKFMSMLEDFWLPRREGG 323 (537) T ss_pred -hHHHHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhcc---ceEEEeccCceecccchhhhhhhhhcccccCCC Confidence 34455433 244444433221111111111 1222222 11222221 Q ss_pred -CceeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccC--cch--HHHHHHHHHHHHHHhhhhhHHHHH Q lcl|Aclame:pro 365 -TEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNA--SSE--GEIRVWYDYVRAYQRNALQQLMND 437 (695) Q Consensus 365 -~e~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glna--tge--~D~~nyyd~i~~~Qe~~l~p~l~~ 437 (695) .-+++++. -+|+.++|+ .-|...+=-+.++|+++|=. .+|||- ++| -|.-.|...|..+|.. +...+.. T Consensus 324 rgTEItTLpGgqnlgem~DV-~YF~kKLy~aLnVP~SRl~~--e~~f~~Gr~~EItRDEiKF~KFI~RLR~r-Fs~lF~~ 399 (537) T protein:vir:10 324 RGTEISTLPGGQNLGELEDV-KYFQKKLYKALNVPSSRLET--ETTFNIGRAAEITRDEVKFQKFIARLRKR-FSELFVD 399 (537) T ss_pred cccceeeccccCCcChHHHH-HHHHHHHHHHhCCCccccCC--CCcccccccchhhHHHHHHHHHHHHHHHH-HHHHHHH Confidence 23455553 446667775 56777888999999999943 467664 222 1456799999998866 4555555 Q ss_pred HHHHHHHH-------hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhh--hhhcchhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 438 VIVMIQLS-------LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV--QEQVIRPDQVAARLNTEPDGPYAG 508 (695) Q Consensus 438 l~~~l~~s-------~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~--~~g~i~~~e~r~~L~~~~~~~~~~ 508 (695) ++..-... .|-.+-+++.|.|.-=...++-..+++......+.+.+- ..-.++.+.+++.+....+...-. T Consensus 400 ~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr~tDeeI~~ 479 (537) T protein:vir:10 400 LLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLKQTESEIKE 479 (537) T ss_pred HHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccCHHHHHH Confidence 44432211 233344578899998888888888888877776665542 112334444444433322222211 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcCCeE Q lcl|Aclame:pro 509 KLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDGKV 588 (695) Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~v 588 (695) .......+.............. ...+. .......... ..+....... ..| .--+.|++ T Consensus 480 ~~k~I~~E~k~~~~~~p~~~~~-~~~~~--~~~~~~~~~~---~~~~~~~~~~---------~~~-------~~~~~~~~ 537 (537) T protein:vir:10 480 IDKEIKQEIADGVIMDPQAMQA-MEMGI--GDEEPVPEGG---EEPQTDPNSA---------VSP-------ADQKRGEL 537 (537) T ss_pred HHHHHHHHhhCCCCCCcccccc-cccCC--CCcccCCCCC---CCcccCCccC---------CCC-------CCccCCCC Confidence 1111111111100000000000 00000 0000000000 0000000000 000 00111222 No 214 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=95.01 E-value=0.003 Score=34.44 Aligned_cols=463 Identities=13% Similarity=0.095 Sum_probs=181.5 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHH---hC Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLA---QL 122 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~---~~ 122 (695) |+.-=.|........-.... ++..|-... |+.....++.++... .. .+...-.+++...|+ +| T Consensus 1 m~~lfgf~~~~~~~~~~~~~---s~~~p~~dd--g~~~~~~~g~~~~~~-~~--------~~~~~~~~eLI~~YR~ma~~ 66 (558) T protein:vir:10 1 MAKLFGFSIEETQKKSTSII---SPVPKNNED--GVDNFISSGFYGQYV-DI--------EGAYRSEYDLIRRYREMALH 66 (558) T ss_pred CcchhcchhhhhhhhccCCc---cccCCCccc--cccceeccceeeeee-cc--------cchhhhHHHHHHHHHHHhhc Confidence 55544444322111100000 000011111 111222222222111 11 111223356666654 69 Q ss_pred hhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh----hchHHHHHHHHHhcCc Q lcl|Aclame:pro 123 PEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER----LRIRDAVRTTVIHDQA 196 (695) Q Consensus 123 ~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~----l~~~~~~~~a~~~~Rl 196 (695) |++..+|+.+.+||+ ...-..|...-+ ..+..+.-.++|..+++. |++...-.+.++.--. T Consensus 67 pEvd~Av~eIVneaiv~d~~~~pV~i~Ld-------------~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYV 133 (558) T protein:vir:10 67 PEADGAIEDVVNEAIVSDLYDSPVEVELS-------------NLNASNTLKKKIREEFRYIKEMMDFDKKSHEIFRNWYV 133 (558) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEec-------------ccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhee Confidence 999999999998874 333333322111 112223344556666654 4556666666664344 Q ss_pred cceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee------------cccccc-------cc-c- Q lcl|Aclame:pro 197 FGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN------------SINPVA-------DD-F- 255 (695) Q Consensus 197 ~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~------------~~dp~s-------~~-y- 255 (695) .|+-+.-..++..++ +.+|+.++-+||..+...... ..+... .. | T Consensus 134 DgRiyfHKiid~k~p--------------k~GI~ELr~lDPr~i~~Vr~i~~~~~~~~~~~~~~~~~~~~~~~~~~eyy~ 199 (558) T protein:vir:10 134 DGRVFYLKVIDTKNP--------------QEGIQDLRYIDPLKIKFIRQEKRKPGNQDPAIRVRSEQDVVPNPEFEEFYI 199 (558) T ss_pred eeEEEEEEEEeCCCc--------------cccceeeeeeCcccceeeeeeccccccccceeeeecccceeeccceeEeee Confidence 555443333432211 123444555555444321110 001000 00 1 Q ss_pred CCceeE-------EEc---ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhc--- Q lcl|Aclame:pro 256 YKPSTW-------WMI---GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS--- 322 (695) Q Consensus 256 g~P~~y-------~i~---~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~--- 322 (695) |.|... +++ +.+|+.+=+. |...-+- ......=.|.|.++...+.+.-.... |-++++.+ T Consensus 200 Y~~~~~~~~~~~~~~~~~~~vkI~~dAI~-y~hSGL~----d~~~~~i~syLhkAIKp~NQLkmlED--AlVIYRitRAP 272 (558) T protein:vir:10 200 YTPKVQHPTGMVGQMGGKNSIKIAKDSIT-MCTSGLV----DRNKNRVLSYLHKAIKALNQLRMIED--SLVIYRLSRAP 272 (558) T ss_pred ecCCcccccccceeecCCCceeechhhee-eecccce----ecCCCeeeecchHhhHhHHhhHHHHh--hHHHHhhhccc Confidence 112111 111 1344444322 2211111 11122234555555444444332222 33444432 Q ss_pred -cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC--------------------------CceeEEEe--c Q lcl|Aclame:pro 323 -VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA--------------------------TEEFFQFN--T 373 (695) Q Consensus 323 -~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~--------------------------~e~~~~~~--~ 373 (695) =.|+-+|..+.-....+.=|. ++++.+| +-++.|++ .-+++++. - T Consensus 273 ERRvFYIDVGnLPk~KAeqYlr---~iM~k~K---NklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgq 346 (558) T protein:vir:10 273 ERRIFYIDVGNLPKVKAEQYLK---EVMSRYR---NKLVYDANTGEVRDDRKFMSMMEDFWLPRREGGRGTEITTLPGGQ 346 (558) T ss_pred cceEEEEecCCCCchhHHHHHH---HHHHhcc---ceEEEeccCceecccchhhhhHhhhcccccCCCCccceeeccccC Confidence 234444432221111111111 1222222 11222221 22455553 4 Q ss_pred ccCChHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---- Q lcl|Aclame:pro 374 PLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEG----EIRVWYDYVRAYQRNALQQLMNDVIVMIQLS---- 445 (695) Q Consensus 374 ~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~----D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s---- 445 (695) +|+.++|+ .-|...+=-+.++|+++|=.+ +|||-+.-+ |.-.|...|.++|.. +...+..++..-... T Consensus 347 nLgem~DV-~YF~kKLy~aLnVP~SRl~~e--~~f~~Gr~~EItRDEiKF~KFI~RLR~r-Fs~lF~~~Lk~qLilKgii 422 (558) T protein:vir:10 347 NLGELSDV-DYFQKKLYRALGVPESRIAAE--GGFNLGRSSEILRDELKFAKFVGRLRKR-FAAMFNDMLKTQLVLKNIV 422 (558) T ss_pred CcchHHHH-HHHHHHHHHHhCCCccccCCC--CcccccccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccCC Confidence 56777776 467777889999999999544 577642222 445789999988866 455555544432211 Q ss_pred ---hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhh--hhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 446 ---LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQ--EQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPA 520 (695) Q Consensus 446 ---~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~--~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~ 520 (695) .|-.+-+++.|.|+-=...++-..+++......+.+.+-. .-.++.+.+++.+....+............+.... T Consensus 423 t~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeeI~~~~kqI~~E~k~~ 502 (558) T protein:vir:10 423 TPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYSTEYVRKRVLRQTDMEIEEIDTQIEDEIQKG 502 (558) T ss_pred CHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCC Confidence 2333445788999988888888888888777766655422 12334444444433322222211111111111111 Q ss_pred hhhhhhhhhhhhhhhhhc---------ccccccccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcC-CeEEE Q lcl|Aclame:pro 521 DDDIDGVLTYVQRLAEGG---------DTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVD-GKVLL 590 (695) Q Consensus 521 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~vLL 590 (695) .+...... .+..+... ................... +-.+++ .+.=| T Consensus 503 ~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 558 (558) T protein:vir:10 503 IIPDPSQI--DPITGEPLPQEGDPAMEGMGEQPVDPDLEAQAQAVD----------------------AQYSKDTKKAEL 558 (558) T ss_pred CCCCcccc--ChhhccccCccCCchhccCCCCCcccccccchhhhh----------------------hhhhhhhhhhcC Confidence 11100000 00000000 0000000000000000000 000000 00000 No 215 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=94.68 E-value=0.0038 Score=33.87 Aligned_cols=442 Identities=13% Similarity=0.043 Sum_probs=167.3 Q ss_pred ccccccccccccchhhhhhhcccccCCCCcccccc---ccc--cccc--ccccchhhhhhhccCCCCchHHHH------- Q lcl|Aclame:pro 52 LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERR---AAS--YALD--FNGTSMDALSFVTSSGFPGFPTLV------- 117 (695) Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~--~~~~~~~~~~~~~~~~f~gy~~~a------- 117 (695) ++-. +..+++-.+++.-...... ... .++. +..+-.....||.+ .+......+ T Consensus 1 m~~~------------~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g-~~~~~~~~~~~~~~~~ 67 (522) T protein:vir:47 1 MSLF------------QKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQS-KWDDVQYKNTDGDIKS 67 (522) T ss_pred CchH------------HHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcC-CcccccccccCcchhc Confidence 0000 0011111111100000000 000 0000 00000011122221 111000000 Q ss_pred -HHHhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCc Q lcl|Aclame:pro 118 -LLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQA 196 (695) Q Consensus 118 -~~~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl 196 (695) .+..-.+.+.||+..|+=++-+-..|. -.++...+.|.+.++.-++...+.+++..+-. T Consensus 68 ~~~~slnl~~~i~~~~A~lv~~e~~~i~--------------------v~d~~~~~~l~~~l~~n~f~~~~~~~~e~a~a 127 (522) T protein:vir:47 68 RPMNHLPIARTASKKIASLVYNEQATIT--------------------TKNEILQKFLDDMLTNDRFNKNFERYLESCLA 127 (522) T ss_pred ccceecchHHHHHHHHhhhhcCCcceee--------------------cCChHHHHHHHHHHhhcchHHHHHHHHHHhhc Confidence 001113333333333322222211111 12345666788888888899999999999888 Q ss_pred cceEEEEEEEcCCCc-------hhccccCCccccccCcc------------eEEEEEecchh------------------ Q lcl|Aclame:pro 197 FGRAHPYFKIKGDDQ-------IMDTPLVPRPYTVPKGS------------FQGLRVVEPYW------------------ 239 (695) Q Consensus 197 ~G~~~i~i~~~~d~~-------~~~~Pl~~~~~~i~~g~------------l~~l~v~d~~~------------------ 239 (695) .||+++-+.++++.. +.--|+..+...+..+. -++.+.+..+. T Consensus 128 ~G~~a~k~~~d~~~~~i~~v~ad~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~ 207 (522) T protein:vir:47 128 LGGLAMRPYIDGDKVRVAFIQAPVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYY 207 (522) T ss_pred cCCEEEEEEEcCCceEEEEEcCCceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCce Confidence 998888777654311 11223322211111110 11112222111 Q ss_pred -ccccceecccccccccCCceeE-------EEcce-EE-chhhE-EEecCCcchhhhhcccCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 240 -VTPNNYNSINPVADDFYKPSTW-------WMIGT-EV-HATRL-HTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWL 308 (695) Q Consensus 240 -i~p~~~~~~dp~s~~yg~P~~y-------~i~~~-~i-H~SRl-i~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~ 308 (695) |+-..|... .+...|.|--. .+... .+ +-+|. +.+--.+.|+.. .....+|+|++..+.+.+...+ T Consensus 208 ~I~n~ly~~~--~~~~lG~~v~l~~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~-~~~splG~S~~~~~~~~id~lD 284 (522) T protein:vir:47 208 RITNELYRSD--VNDVLGQRVNLSELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNK-DINSPLGLSIFDNAKTTIDFIN 284 (522) T ss_pred EEEEEEeecC--CCcccCccccccccccccCCCCceEeCCCCcceEEEecCCccccc-ccCCCcCCchhhhhHHHHHHHH Confidence 000001000 01111111100 00000 00 11221 111111222211 1134579999999999999999 Q ss_pred HHhHHHHHHHHHhccceeeec-hHHhhcc--hHHHHHHHHHHHH-HHhcCCceeEEEEcCCceeEEEeccc--CChHHHH Q lcl|Aclame:pro 309 RTRQSVSDIVKQFSVSGILMD-LAQALMP--GANVDLSMRAELI-NRYRDNRNILFLDKATEEFFQFNTPL--SGLDALQ 382 (695) Q Consensus 309 ~~~~~~~~l~~~~~~~v~k~~-~~~~l~~--~~~~~l~~r~~~~-~~~~~n~~~~~ld~~~e~~~~~~~~l--sgl~~~~ 382 (695) .+......=+......++--. +...... ++.......++.- +.++... .- +.+...++.++..+ ..+...+ T Consensus 285 ~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~~~~~~fd~~~~~f~~~~-~~--~~~~~~i~~~~~~ir~e~~~~~~ 361 (522) T protein:vir:47 285 RSYDEFMWEVRMGQRRVIVPEHLTQRQYQRPDGTIDFRPRFDVEQNVYMQIG-GS--SMDAGGITDLTSPIRANDYILAI 361 (522) T ss_pred HHHHHHHHHHHhccceeecchHHhccCCCCCCcccccccccCcccceEeecC-CC--CCCCCcceeeccccChHHHHHHH Confidence 877655544433333333211 2221111 1111111111110 0111110 00 01223466666544 3566778 Q ss_pred HHHHHHHHhhhcCCceeeeccCcccccCcchH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----c-CCC--C Q lcl|Aclame:pro 383 AQAQEQMSAVSHIPLIKLLGITPTGLNASSEG---EIRVWYDYVRAYQRNALQQLMNDVIVMIQLSL-----F-GAV--D 451 (695) Q Consensus 383 ~~~~~~iaaas~iP~t~L~G~sp~Glnatge~---D~~nyyd~i~~~Qe~~l~p~l~~l~~~l~~s~-----~-g~~--~ 451 (695) +.+.+.++-.+|+.-..+ |...+|. .|+.+ ..+.-|.+++.+|. .++..|++++..++.-. + +.. + T Consensus 362 ~~~l~~i~~~~gls~~tf-~~~~~~~-kTAtEi~s~~~~~~~t~~~~~~-~~~~al~~lv~~i~~l~~~~~~~~~~~~~~ 438 (522) T protein:vir:47 362 SEGLKLFEMQIGVSSGMF-TFDGQGM-KTATEIVSENSDTYQMRSSIVA-LVEQSIKELCVSMCELGKAVGVYSGEIPEL 438 (522) T ss_pred HHHHHHHHHHhCCCcccc-Ccccccc-ccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhccCCCCCc Confidence 888888888888876544 5444454 33331 33456677777664 47888888887775221 1 222 3 Q ss_pred CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 452 PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYV 531 (695) Q Consensus 452 ~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (695) .++++.|++--..+..+.++. ...++.+|+++..+.....- +.... ............... .. T Consensus 439 ~~i~v~f~D~i~~D~~~~~~~-------~~~~v~aG~~s~e~~i~~~~-----g~~ee-ea~~el~ri~~E~~~----~~ 501 (522) T protein:vir:47 439 DDISVNLDDGVFTDRHAELDY-------WAKMVAAGFSTKKRAIGKTL-----NISGV-EAEKELNAINSELLP----MN 501 (522) T ss_pred ceeEEEcCCCCCCCHHHHHHH-------HHHHHhcCCCCHHHHHHhcC-----CCChH-HHHHHHHHHHHhhcc----CC Confidence 468899998888776555333 33445566666655432211 11100 000000000000000 00 Q ss_pred hhhhhhcccccccccCCCccchhhhhhhhh Q lcl|Aclame:pro 532 QRLAEGGDTGAPGGARAGATAPPTVANVNA 561 (695) Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (695) ....... .......... .... T Consensus 502 ~~~~~~~--------~~~~~~~~~~-d~~~ 522 (522) T protein:vir:47 502 DAELAIY--------GMHDQNEEKA-DDKG 522 (522) T ss_pred CCCCCCC--------CCCCcccccC-CCCC Confidence 0000000 0000000000 0000 No 216 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=94.60 E-value=0.004 Score=33.74 Aligned_cols=432 Identities=10% Similarity=0.055 Sum_probs=185.0 Q ss_pred cCCCCcccchhhccccccc----c-------cccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhh Q lcl|Aclame:pro 37 TAAQPVPADMGRRGALNAL----D-------AAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFV 105 (695) Q Consensus 37 ~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (695) |.- | |..-=.+... + .+...+||...+++ .+++.+..++.. .++.++ .++ T Consensus 1 m~~-~----~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa--~~I~~~~~~~~~-~~~~~~-----------~~~ 61 (521) T protein:vir:10 1 MNP-I----FLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADGA--IEVDKQIDTTAP-KTAIVQ-----------SVL 61 (521) T ss_pred CCc-c----hhHHhhhhhhhhhhHHhhhhccCccccccccCCCCc--eeeccCCCcccc-ccchhh-----------hhh Confidence 000 0 1111011000 0 00000111111100 001111011000 000000 112 Q ss_pred ccCCC--CchHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHH Q lcl|Aclame:pro 106 TSSGF--PGFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEI 178 (695) Q Consensus 106 ~~~~f--~gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 178 (695) ...++ -.+++...| ++||++..+|+.+.+||+ .+.-..|...-+ ..+....-.++|.+++ T Consensus 62 ~~~~~~~n~~eLI~~YR~ma~~pEvd~Av~eIvneaiv~d~~~~pV~i~Ld-------------~~~~s~~iK~kI~eeF 128 (521) T protein:vir:10 62 GYAPKIQNTKDLINQYRSLSKYHEVDNAIDEIINDAIVQEDNRDTVYLDLD-------------KTDWNESVKEMVREEF 128 (521) T ss_pred ccccccchHHHHHHHHHHHhhccchhhHHHhhhcceEEecCCCceEEEEec-------------CcccchHHHHHHHHHH Confidence 22233 135555655 469999999999998874 233333322111 1111223334455555 Q ss_pred Hh----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccce-ecccccc- Q lcl|Aclame:pro 179 ER----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNY-NSINPVA- 252 (695) Q Consensus 179 ~~----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~-~~~dp~s- 252 (695) +. |+....-.+.++.--..|+-+--..|+.++ .+.+|+.++-+||..+..... ...++.. T Consensus 129 ~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~~~--------------pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~ 194 (521) T protein:vir:10 129 RTILKLLKFEREGKRHFRRWYVDSRIYFHKMIDPAR--------------PKDGIKELRLLDPRNVEYYRVNLKSNENGN 194 (521) T ss_pred HHHHHHhccchhhhHHHhhheeeeeEEEEEEeeCCC--------------ccccceeeeeeCCcceeeeeeecCCCCCcc Confidence 54 455666666666434455533333343222 122445555555555532211 0000000 Q ss_pred -------cc-cCCc---eeEEEcc-----eEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHH Q lcl|Aclame:pro 253 -------DD-FYKP---STWWMIG-----TEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSD 316 (695) Q Consensus 253 -------~~-yg~P---~~y~i~~-----~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~ 316 (695) .. .|.| .+|-.+| .+|+.+=+. |...- +.........|.|.++...+.+.-.... |- T Consensus 195 ~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~vkI~~daI~-y~hSG----L~d~~~~~i~syLhkAiKp~NQLkm~ED--Al 267 (521) T protein:vir:10 195 DVYKGVKEFFTYGATEDNRYNISGNSNNLVQIPIDAIV-YSHSG----KVDIDGKTIVGYLHNVIKPANQLKMLED--AM 267 (521) T ss_pred hhhccceeeeeeccCCCceecCCCCCCcceeechhhee-eeccc----ceeCCCCceeccchhhhHhHHhhHHHHh--hH Confidence 00 0111 3333332 456665443 33221 1233445677888776665555443333 34 Q ss_pred HHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEcC--------------------------Cc Q lcl|Aclame:pro 317 IVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA--------------------------TE 366 (695) Q Consensus 317 l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~~--------------------------~e 366 (695) ++++.+ =.|+-+|..+.-...++ +..+ ++++.+|+ -++.|++ .- T Consensus 268 VIYRitRAPeRRvFYIDvGnlpk~KAe-qYl~--~iM~k~kN---klVYDa~TGev~ddrk~msMlEDyWLpRReGgrgT 341 (521) T protein:vir:10 268 VIYRITRAPERRVFYIDVGTMPNKKAT-QHLN--NVMQGLKN---RVVYDSSTGKVKNSSNNLAMTEDYWLMRRDGKATT 341 (521) T ss_pred HHHhhhccccceEEEEecCCCCchhHH-HHHH--HHHHhcCc---eEEEeccCceeccchhhhhhHhhhcccccCCCCcc Confidence 455433 23444443222111111 1111 11222221 1222221 23 Q ss_pred eeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc--Ccch--HHHHHHHHHHHHHHhhhhhHHHHHHHH Q lcl|Aclame:pro 367 EFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSE--GEIRVWYDYVRAYQRNALQQLMNDVIV 440 (695) Q Consensus 367 ~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~p~l~~l~~ 440 (695) +++++. -+|+.++|+ .-|...+=-+.++|+++|=.+ .+|+| .++| -|.-.|...|..+|.. +...+..++. T Consensus 342 EI~TLpggqnlgem~DV-~YF~kkLy~aLnVP~sRl~~e-~~~f~~Gr~~EItRDEikF~KFI~rLR~r-Fs~~f~~~L~ 418 (521) T protein:vir:10 342 EVSTLPGAQSMGEMDDV-RWFNRKLYESMKIPLSRLPQE-GAGVTFGAGNDITRDELQFTKYIRGLQQQ-FEPIFLNPLR 418 (521) T ss_pred ceeeccccCCcChHHHH-HHHHHHHHHHhCCCccccCCC-CCceecccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHH Confidence 455553 446667775 567777889999999998544 34554 4333 2456789999988866 4555555444 Q ss_pred HHHHH-------hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhh----hhhcchhhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 441 MIQLS-------LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYV----QEQVIRPDQVAARLNTEPDGPYAGK 509 (695) Q Consensus 441 ~l~~s-------~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~----~~g~i~~~e~r~~L~~~~~~~~~~~ 509 (695) .-... .|-.+-+++.|.|.-=..-++-..+++......+.+.+- ..-.++.+.+++.+....+...-.. T Consensus 419 ~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~yvGky~s~dyi~k~ILr~tDeeik~~ 498 (521) T protein:vir:10 419 TNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEVTGKYLSHEYVMKNILRMSDEDIKTE 498 (521) T ss_pred HhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccccccccchHHHHHHHhcCCHhHHHHH Confidence 32211 233344578899998888888888888887777766552 2234555555544433332222111 Q ss_pred hhhhhhhhhhhhhhh--hhhhhh Q lcl|Aclame:pro 510 LDANDDPGVPADDDI--DGVLTY 530 (695) Q Consensus 510 ~~~~~~~~~~~~~~~--~~~~~~ 530 (695) ......+........ .....+ T Consensus 499 ~k~I~~E~~~~~~~~p~~e~~df 521 (521) T protein:vir:10 499 REKIDGELKDSVYKNPEDPMEEF 521 (521) T ss_pred HHHHHHhhhCCCCCCCcchhhcC Confidence 111111111100000 000000 No 217 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=93.72 E-value=0.0066 Score=32.54 Aligned_cols=444 Identities=12% Similarity=0.071 Sum_probs=180.7 Q ss_pred cChhhhHHHHHHHHHhcCCCCcccchhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchh Q lcl|Aclame:pro 21 VAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMD 100 (695) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (695) |.- -+++-++ ++...-.+.....-.+.....+||...|++...++ +. ...+++|+. +.. T Consensus 1 m~f--------~~~~lf~--f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~--~~----~~~~~~~~~----~~q- 59 (523) T protein:vir:68 1 MKF--------NILSLFA--PWAKMDERDYKDQEKENLESITSPKLDDGAKEYEV--SE----NEAQQTYNA----MFQ- 59 (523) T ss_pred CCC--------chhhhhh--hhhhhhhhhhhhhhhccCCCccccCCCCcceeeec--cc----cccccccch----hhh- Confidence 111 0011000 00000000000000111112222222222211110 00 011111111 111 Q ss_pred hhhhhcc--CCC-CchHHHHHH---HhChhhhhHhhcchHHHh--hCCceeeccchhhhhccCccccccccccCCHHHHH Q lcl|Aclame:pro 101 ALSFVTS--SGF-PGFPTLVLL---AQLPEYRAMHEVLADECI--RTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLK 172 (695) Q Consensus 101 ~~~~~~~--~~f-~gy~~~a~~---~~~~~~r~~v~~~a~d~t--R~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~ 172 (695) .+|.+ +++ ..+++...| ++||++..+|+.+.+||+ ...-..|...-+ ..+....-.+ T Consensus 60 --~~y~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~i~Ld-------------~~~~s~~iK~ 124 (523) T protein:vir:68 60 --RMFGSQEPGLKSTRELIDTYRNLMTNYEVDNAVSEIVSDAIVYEDDTEVVSINLD-------------NTKFSPNIKS 124 (523) T ss_pred --hhhhccccccchHHHHHHHHHHHhhccchhhHHHHhhcceeeecCCCceEEEEec-------------ccccchHHHH Confidence 11111 111 235566655 469999999999998874 233333322111 1123334444 Q ss_pred HHHHHHHh----hchHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee-c Q lcl|Aclame:pro 173 QINDEIER----LRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN-S 247 (695) Q Consensus 173 ~i~~~~~~----l~~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~-~ 247 (695) +|.++++. |+....-.+.++.--..|+-+.-..++..+ .+.+|+.++-+||..+...... . T Consensus 125 kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~--------------pk~GI~Elr~lDPr~i~~vr~i~~ 190 (523) T protein:vir:68 125 MMLDEFNEVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKR--------------PKEGIKELRRLDPRQVQYVREVIT 190 (523) T ss_pred HHHHHHHHHHHHhccchhhhHHHHhheeeeEEEEEEEeeCCC--------------ccccceeeeeeCCcceeEEEeecC Confidence 56666554 455666666666433445443333332121 1224556666666665432110 0 Q ss_pred ccccc--------c-ccCCce--eEEEc--------ceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 248 INPVA--------D-DFYKPS--TWWMI--------GTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWL 308 (695) Q Consensus 248 ~dp~s--------~-~yg~P~--~y~i~--------~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~ 308 (695) .++.. . ..|.|. .|..+ +.+|+.+=+..-..+-+ +.....=.|.|.++...+.+.- T Consensus 191 ~~~~g~~vi~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL~-----d~~~~~i~gyLhkAiKp~NQLk 265 (523) T protein:vir:68 191 TTEAGVKIVKGYKEYFIYDTSHESYACDGRIYEAGTKIKIPKAAIVYAHSGLV-----DCCGKNIIGYLHRAIKPANQLK 265 (523) T ss_pred CCCcchhhhhhhhhheeeccccccccccccccCCCcceecchhheeeeeccce-----eCCCCceeccchhhhHHHHhhH Confidence 01100 0 012221 11122 23555554332222211 1111223455555544444433 Q ss_pred HHhHHHHHHHHHhc----cceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEc--------------------- Q lcl|Aclame:pro 309 RTRQSVSDIVKQFS----VSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK--------------------- 363 (695) Q Consensus 309 ~~~~~~~~l~~~~~----~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~--------------------- 363 (695) .... |-++++.+ =.|+-+|..+.-...++.=|. ++++.+|+ -++.|. T Consensus 266 mlED--AlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~---~im~k~kN---KlvYDa~TGev~ddrk~msMlEDyWLp 337 (523) T protein:vir:68 266 LLED--AVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQ---HVMNTMKN---RIAYDATTGKIKNQQHIMSMTEDYWLQ 337 (523) T ss_pred HHHh--hHHHHhhhccccceEEEEecCCCCchhHHHHHH---HHHHhhcc---eeEEeccCCeeccchhhhhhHhhhccc Confidence 2222 33344332 234444432211111111111 11111110 111111 Q ss_pred -----CCceeEEEe--cccCChHHHHHHHHHHHHhhhcCCceeeeccCccccc--Ccch--HHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 364 -----ATEEFFQFN--TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLN--ASSE--GEIRVWYDYVRAYQRNALQ 432 (695) Q Consensus 364 -----~~e~~~~~~--~~lsgl~~~~~~~~~~iaaas~iP~t~L~G~sp~Gln--atge--~D~~nyyd~i~~~Qe~~l~ 432 (695) -.-+++++. .+|+.++|+ .-|...+=-+.++|+++|-+++ +|+| .++| -|.-.|...|..+|.. +. T Consensus 338 RReGgrgTEItTLpGgqnlgem~DV-~YF~kkLy~aLnVP~sRl~~~~-~~f~~Gr~~EItRDEikF~KFI~rLR~r-Fs 414 (523) T protein:vir:68 338 RRDGKAVTEVDTLPGADNTGNMEDV-RWFRNALYMALRIPITRIPSDQ-GGIQFDAGTSITRDELSFGKFIRELQHK-FE 414 (523) T ss_pred ccCCCcccceeeccccCCcChHHHH-HHHHHHHHHHhCCcceeecCCC-cceecccccchhHHHHHHHHHHHHHHHH-HH Confidence 123456663 356777776 5677778899999999997653 5676 4444 2556799999998866 45 Q ss_pred HHHHHHHHHHHHH-------hcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhh--hhcchhhhhhhhhhhhhh Q lcl|Aclame:pro 433 QLMNDVIVMIQLS-------LFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQ--EQVIRPDQVAARLNTEPD 503 (695) Q Consensus 433 p~l~~l~~~l~~s-------~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~--~g~i~~~e~r~~L~~~~~ 503 (695) ..+..++..-... .|-.+-+++.|.|.-=..-++-..+++......+.+.+-. .-.++.+.+++.+....+ T Consensus 415 ~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tD 494 (523) T protein:vir:68 415 EIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSELKDAEILERRINMLQMAEPFIGKYISHRTAMKDILQMSD 494 (523) T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCH Confidence 5555544432211 2333445788999888888888888888777766655422 122344444443332222 Q ss_pred hhhhhhhhhhhhh--hhhhhhhhhhhhhh Q lcl|Aclame:pro 504 GPYAGKLDANDDP--GVPADDDIDGVLTY 530 (695) Q Consensus 504 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 530 (695) ............+ .............+ T Consensus 495 eei~~~~kqI~~E~k~~~~~~p~~e~~~f 523 (523) T protein:vir:68 495 EEIEQEAKQIEEESKEARFQDPDQEQEDF 523 (523) T ss_pred HHHHHHHHHHHHHhhcCCCCCCchhhhcC Confidence 2211111111111 00000000000111 No 218 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=93.23 E-value=0.0083 Score=32.00 Aligned_cols=443 Identities=11% Similarity=0.020 Sum_probs=179.0 Q ss_pred ccccccccccccchhhhhhhcccccCCCCcccccccccccc--cccccchhhhhhhccCCCCchHHHHHHHhC--hhhhh Q lcl|Aclame:pro 52 LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYAL--DFNGTSMDALSFVTSSGFPGFPTLVLLAQL--PEYRA 127 (695) Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~--~~~r~ 127 (695) +.-+ .+. .+.+.+..++.-++ .........+. -|-+++.|..| ..+.. T Consensus 1 ~~~~-----------~~~---------~~~~~~~~~g~~~~p~~v~~~d~~Rl~--------aY~l~~~~y~n~~~~~~~ 52 (527) T protein:vir:10 1 MGQD-----------KRQ---------YGSTQQLRAGEANFPNAVTDFDKARLA--------SYRLYEDMYLTNTSDYQV 52 (527) T ss_pred CCcc-----------ccc---------cCCCcCcCCccccCcccCCHHHHHHHH--------HHHHHHHHhcCchhheee Confidence 0000 000 00001111111111 11111111111 12222222211 11110 Q ss_pred HhhcchHHHhhCCceeeccchhhhhccCccccccc----cccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEE Q lcl|Aclame:pro 128 MHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNA----ASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPY 203 (695) Q Consensus 128 ~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~----~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~ 203 (695) + .-.+|+ |-=+.|..+.....+.....+.... ..+.++.....++...++=++..++.++.+|+-.-|.++-. T Consensus 53 ~--lrg~~~-~~~r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~ 129 (527) T protein:vir:10 53 I--LRGGDE-GDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLL 129 (527) T ss_pred e--cCCccc-cccceeeehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEE Confidence 0 001111 0001222222222211111111111 11223445556667777778889999999999999987755 Q ss_pred EEEcCCCch------hccccC------CccccccCcceEEEEEecchhccccce-------------ecccccccc-cCC Q lcl|Aclame:pro 204 FKIKGDDQI------MDTPLV------PRPYTVPKGSFQGLRVVEPYWVTPNNY-------------NSINPVADD-FYK 257 (695) Q Consensus 204 i~~~~d~~~------~~~Pl~------~~~~~i~~g~l~~l~v~d~~~i~p~~~-------------~~~dp~s~~-yg~ 257 (695) +.=+ +++. +..+-+ .++. ..+.+.+++..+.|..-.+.- ...|...|- .|. T Consensus 130 l~wD-~~k~~~~R~~v~~~DP~~~f~~ed~d--~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~ 206 (527) T protein:vir:10 130 LIGD-DEKDEGSRLSLHEVDPSTYFPYEDPR--YPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGA 206 (527) T ss_pred Eeec-cCCCcCCCceEeecCcceeeeeecCC--CCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcc Confidence 4422 1111 111000 0111 223455555554444321110 011111111 111 Q ss_pred c----eeEEE--------------------cceEEchhh-------EEEecCCcchhhhhcccCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 258 P----STWWM--------------------IGTEVHATR-------LHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDN 306 (695) Q Consensus 258 P----~~y~i--------------------~~~~iH~SR-------li~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~ 306 (695) - ..|.+ .+..+|..= +++|.+- .+.+..||.|-|..+..-+.. T Consensus 207 ~~yt~~~w~lg~w~d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~------p~~~~~WG~S~La~ll~l~de 280 (527) T protein:vir:10 207 IKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGH------PIMNAMFGRSGLAGLESLIAS 280 (527) T ss_pred eeeeeceeeccccccccccccchhhhhhhcCceeeecccCCCCccceEeecCC------CccccccChhhHhHHHHHHHH Confidence 0 11211 111222221 1223222 234568999999988887777 Q ss_pred HHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEE-EEcCCceeEEEec--ccCChHHHHH Q lcl|Aclame:pro 307 WLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILF-LDKATEEFFQFNT--PLSGLDALQA 383 (695) Q Consensus 307 ~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~-ld~~~e~~~~~~~--~lsgl~~~~~ 383 (695) ..++..-.+-++.-..+.++.++++.-....++ . .=++. --|++. ++ ++.++..+++ .++++.+.++ T Consensus 281 Ln~~~Td~s~is~~sG~Pi~~~tg~~~vd~~G~--~----~~~~V---gPG~iweL~-e~ak~~~v~~~~~la~~~~h~~ 350 (527) T protein:vir:10 281 VNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGN--M----VPWTI---SPLGMVEHG-QNNKIYRVNGVASLEPSQTHMT 350 (527) T ss_pred HhhhhhHHHHHHHHhCCceeeecccccccccCC--c----Ccccc---CCceeEecC-CCcceeeccchhhhHHHHHHHH Confidence 777665555555555566666665543322111 0 00000 122333 43 4667777776 5677899999 Q ss_pred HHHHHHHhhhcCCceeeecc-CcccccCcchHHHHHH-HHHHHHHHhhhh--hHHHHHHHH-HH---H--HHhcCCCC-- Q lcl|Aclame:pro 384 QAQEQMSAVSHIPLIKLLGI-TPTGLNASSEGEIRVW-YDYVRAYQRNAL--QQLMNDVIV-MI---Q--LSLFGAVD-- 451 (695) Q Consensus 384 ~~~~~iaaas~iP~t~L~G~-sp~Glnatge~D~~ny-yd~i~~~Qe~~l--~p~l~~l~~-~l---~--~s~~g~~~-- 451 (695) .+++.|+..+++|.+-+ |. -+++ +.||- -++-. --.+++.|+..| +-.+.++.. .+ + +-.++--+ T Consensus 351 ~L~~~l~~vA~~PavA~-G~vD~s~-~~SG~-ALeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~ 427 (527) T protein:vir:10 351 KAEEAMQQTKGIPDIAV-GVVDAAV-AESGI-ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD 427 (527) T ss_pred HHHHHHHHhhcCCeeee-ccccCCc-CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCc Confidence 99999999999999877 52 1222 23333 33333 333444444432 222322111 11 0 11122111 Q ss_pred --CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--h Q lcl|Aclame:pro 452 --PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDG--V 527 (695) Q Consensus 452 --~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 527 (695) -...+.|.|..-.++++. .+....++.+|+++...+.+.|...+-....................... . T Consensus 428 ~~~~v~ivf~p~lP~D~~av-------ie~v~tL~~aGi~S~~tAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~A~ 500 (527) T protein:vir:10 428 KKLTVTITFRDPKPVNSEKR-------FNQLLQLWEAGLIPAKKLTEELSKIMGFELTEEDFKQATEDKKTQGIAQAEAA 500 (527) T ss_pred cccceEEEecccCCCCHHHH-------HHHHHHHHHcCchhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhHHhhhhc Confidence 145789999865555443 35566788899999999888876544322222211111111111111100 0 Q ss_pred hhhhhhhhhhcccccccccCCCccchh Q lcl|Aclame:pro 528 LTYVQRLAEGGDTGAPGGARAGATAPP 554 (695) Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (695) .......+................... T Consensus 501 ~~~~a~~~~~~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 501 DPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) T ss_pred CchhhhhccccCCCCCCcccccCCCCC Confidence 001111111111100000000000000 No 219 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=93.15 E-value=0.0086 Score=31.91 Aligned_cols=443 Identities=11% Similarity=0.018 Sum_probs=179.0 Q ss_pred ccccccccccccchhhhhhhcccccCCCCcccccccccccc--cccccchhhhhhhccCCCCchHHHHHHHhC--hhhhh Q lcl|Aclame:pro 52 LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYAL--DFNGTSMDALSFVTSSGFPGFPTLVLLAQL--PEYRA 127 (695) Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~--~~~r~ 127 (695) +.-+ .+. .+.+.+..++.-++ .........+. -|-+++.|..| ..+.. T Consensus 1 ~~~~-----------~~~---------~~~~~~~~~g~~~~p~~v~~~d~~Rl~--------aY~l~~~~y~n~~~~~~~ 52 (527) T protein:vir:10 1 MGQD-----------KRQ---------YGSTQQLRAGEANFPNAVTDFDKARLA--------SYRLYEDMYLTNTSDYQV 52 (527) T ss_pred CCcc-----------ccc---------cCCCcCcCCccccCcccCCHHHHHHHH--------HHHHHHHHhcCchhheee Confidence 0000 000 00001111111111 11111111111 12222222211 11110 Q ss_pred HhhcchHHHhhCCceeeccchhhhhccCccccccc----cccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEE Q lcl|Aclame:pro 128 MHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNA----ASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPY 203 (695) Q Consensus 128 ~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~----~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~ 203 (695) + .-.+|+ |-=+.|..+.....+.....+.... ..+.++.....+....++=++..++.++.+|+-.-|.++-. T Consensus 53 ~--lrg~~~-~~~r~~~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~ 129 (527) T protein:vir:10 53 I--LRGGDE-GDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLL 129 (527) T ss_pred e--cCCccc-cccceeeehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEE Confidence 0 001111 0001222222222211111111111 12223445566677777778889999999999999987755 Q ss_pred EEEcCCCch------hccccC------CccccccCcceEEEEEecchhccccce-------------ecccccccc-cCC Q lcl|Aclame:pro 204 FKIKGDDQI------MDTPLV------PRPYTVPKGSFQGLRVVEPYWVTPNNY-------------NSINPVADD-FYK 257 (695) Q Consensus 204 i~~~~d~~~------~~~Pl~------~~~~~i~~g~l~~l~v~d~~~i~p~~~-------------~~~dp~s~~-yg~ 257 (695) +.=+ +++. +..+-+ .++. ..+.+.+++..+.|..-.+.- ...|...|- .|. T Consensus 130 l~wD-~~k~~~~R~~v~~~DP~~~f~~ed~d--~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~ 206 (527) T protein:vir:10 130 LIGD-DEKDEGSRLSLHEVDPSTYFPYEDPR--YPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGA 206 (527) T ss_pred Eeec-cCCCcCCCceEeecCcceeeeeecCC--CCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcc Confidence 4422 1111 111000 0111 223455555554444321110 011111111 111 Q ss_pred c----eeEEE--------------------cceEEchhh-------EEEecCCcchhhhhcccCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 258 P----STWWM--------------------IGTEVHATR-------LHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDN 306 (695) Q Consensus 258 P----~~y~i--------------------~~~~iH~SR-------li~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~ 306 (695) - ..|.+ .+..+|..= +++|.+- .+.+..||.|-|..+..-+.. T Consensus 207 ~~yt~~~w~lg~w~d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~------p~~~~~WG~S~La~ll~l~de 280 (527) T protein:vir:10 207 IKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGH------PIMNAMFGRSGLAGLESLIAS 280 (527) T ss_pred eeeeeceeeccccccccccccchhhhhhhcCceeeecccCCCCccceEeecCC------CccccccChhhHhHHHHHHHH Confidence 0 11211 111222221 1223222 234568999999988887777 Q ss_pred HHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEE-EEcCCceeEEEec--ccCChHHHHH Q lcl|Aclame:pro 307 WLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILF-LDKATEEFFQFNT--PLSGLDALQA 383 (695) Q Consensus 307 ~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~-ld~~~e~~~~~~~--~lsgl~~~~~ 383 (695) ..++..-.+-++.-..+.++.++++.-....++ . .=++. --|++. ++ ++.++..+++ .++++.+.++ T Consensus 281 Ln~~~Td~s~is~~sG~Pi~~~tg~~~vd~~G~--~----~~~~V---gPG~iweL~-e~ak~~~v~~~~~la~~~~h~~ 350 (527) T protein:vir:10 281 VNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGN--M----VPWTI---SPLGMVEHG-QNNKIYRVNGVASLEPSQTHMN 350 (527) T ss_pred HhhhhhHHHHHHHHhCCceeeecccccccccCC--c----Ccccc---CCceeEecC-CCcceeeccchhhhHHHHHHHH Confidence 777665555555555566666665543322111 0 00000 122333 43 4667777776 5677899999 Q ss_pred HHHHHHHhhhcCCceeeecc-CcccccCcchHHHHHH-HHHHHHHHhhhh--hHHHHHHHH-HH---H--HHhcCCCC-- Q lcl|Aclame:pro 384 QAQEQMSAVSHIPLIKLLGI-TPTGLNASSEGEIRVW-YDYVRAYQRNAL--QQLMNDVIV-MI---Q--LSLFGAVD-- 451 (695) Q Consensus 384 ~~~~~iaaas~iP~t~L~G~-sp~Glnatge~D~~ny-yd~i~~~Qe~~l--~p~l~~l~~-~l---~--~s~~g~~~-- 451 (695) .+++.|+..+++|.+-+ |. -+++ +.||- -++-. --.+++.|+..| +-.+.++.. .+ + +-.++--+ T Consensus 351 ~L~~~l~~vA~~PavA~-G~vD~s~-~~SG~-ALeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~ 427 (527) T protein:vir:10 351 KAEEAMQQTKGIPDIAV-GVVDAAV-AESGI-ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD 427 (527) T ss_pred HHHHHHHHhhcCCeeee-ccccCCc-CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCc Confidence 99999999999999877 52 1222 23333 33333 333444444432 222322111 11 0 11122111 Q ss_pred --CceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--h Q lcl|Aclame:pro 452 --PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDG--V 527 (695) Q Consensus 452 --~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 527 (695) -...+.|.|..-.+.++. .+....++.+|+++...+.+.|...+-....................... . T Consensus 428 ~~~~v~ivf~p~lP~D~~av-------ie~v~tL~~aGiiS~etAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~a~ 500 (527) T protein:vir:10 428 KKLTVTITFRDPKPVNNEKR-------FAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAA 500 (527) T ss_pred cccceEEEecccCCCCHHHH-------HHHHHHHHHcCchhHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhHHhhhhc Confidence 145789999855555443 34566788899999999888876544322222211111111111110000 0 Q ss_pred hhhhhhhhhhcccccccccCCCccchh Q lcl|Aclame:pro 528 LTYVQRLAEGGDTGAPGGARAGATAPP 554 (695) Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (695) .......+................... T Consensus 501 ~~~~a~~~~~~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 501 DPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) T ss_pred CchhhhhccccCCCCCCcccccCCCCC Confidence 001111111111100000000000000 No 220 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=88.82 E-value=0.03 Score=28.93 Aligned_cols=439 Identities=11% Similarity=-0.003 Sum_probs=173.4 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.+.-=. ....|.....+......... .-....+.+..++ .++....-+. ... ..+.....+....-+ T Consensus 1 ~~~~i~~--~~g~~~~~~~~~~~~~~~ia--~~~~~~~~~~~~~----~~p~~~~il~--~~~--~~~~~y~~m~~D~~i 68 (491) T protein:vir:79 1 MSKGLWV--SPTEFVKFGEPDKSLSSQIA--TRARSIDFFALGM----YLPNPDPVLK--ALG--KDIRVYRELRADAHV 68 (491) T ss_pred CCCeeeC--CCCCcccccccchhHHHHHh--hhccccccccccc----cCcchhHHHh--hcc--CCHHHHHHHhhChHH Confidence 4332211 11111111110000000000 0000001111111 1111100010 000 112222222334444 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFK 205 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~ 205 (695) ..+++..-.-.+..=++|. .. +.+.+..+.+++.++++.+.+.+.+.+- +.+||.++.=|. T Consensus 69 ~s~l~~Rk~av~~~~w~i~---------------~~---~~~~~~a~~i~e~l~~~~~~~~i~~~ld-a~~~G~s~~Ei~ 129 (491) T protein:vir:79 69 GGCVRRRKAAVKALEWGLD---------------RG---KAKSRVAKSIADVFADLDLSRIATEMLD-AVLYGYQPMEIT 129 (491) T ss_pred HHHHHHHHHHHhCCCcEEe---------------cC---CCCHHHHHHHHHHHhcCCHHHHHHHHHH-hhhhcceeEEEE Confidence 4444443322222212222 11 2234556788888999988888887776 889999997765 Q ss_pred EcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecCCcchhhh Q lcl|Aclame:pro 206 IKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDML 285 (695) Q Consensus 206 ~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~~~~p~~~ 285 (695) -..++. ...++.|...++.|+... +............+.|..+.+-+.+.+.... T Consensus 130 w~~~~g--------------~~~~~~l~~r~~~~f~~d------~~~~l~l~~~~~~~~g~~lp~~k~i~~~~~~----- 184 (491) T protein:vir:79 130 WGKVGN--------------YIVPIDVVGKPADWFVYD------PENQLRFRSKEHWVQGEELPARKFLVPRQEA----- 184 (491) T ss_pred EeecCC--------------eeeEEeeeeecccceeec------cCCceEEeecCCCCCceeecCCCeEEEEecC----- Confidence 432221 112345666666665421 1111000000112344566666766665432 Q ss_pred hcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcCCceeEEEEc Q lcl|Aclame:pro 286 KPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK 363 (695) Q Consensus 286 ~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~~~~~ld~ 363 (695) ...+.+|.|++..||....--..+..--+..+.++++. +.|.+- ..+ +++...-++.+..+.+ .+..++. T Consensus 185 -~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~~--~a~---~~ek~~l~~al~~~~~-~a~~viP- 256 (491) T protein:vir:79 185 -TYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPR--SAS---DAETNLLLDRLEDMVQ-DAVAVIP- 256 (491) T ss_pred -CCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCC--CCC---HHHHHHHHHHHHHHhc-CeEEEec- Confidence 23456899999999887766566666667788888864 455431 111 2233344555555544 4555665 Q ss_pred CCceeEEEecc-cCCh----HHHHHHHHHHHHhhhcCCceeeeccC----cccccCcchHHHHHHHHHHHHHHhhhhhHH Q lcl|Aclame:pro 364 ATEEFFQFNTP-LSGL----DALQAQAQEQMSAVSHIPLIKLLGIT----PTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (695) Q Consensus 364 ~~e~~~~~~~~-lsgl----~~~~~~~~~~iaaas~iP~t~L~G~s----p~Glnatge~D~~nyyd~i~~~Qe~~l~p~ 434 (695) .+.+++.++.. .+|= ..+++..-++|+-+. +|++ .+|=+|.|+--.....+.+++... .+... T Consensus 257 ~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i-------LGqtlTt~~~gs~a~~~vh~~v~~~i~~~D~~-~i~~t 328 (491) T protein:vir:79 257 DDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL-------LGQNQTTEATSTRASAQAGLEVTDDIRDGDKA-IVVEA 328 (491) T ss_pred CCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH-------hhhhhccCcccchhhHHHHHHHHHHHHHHHHH-HHHHH Confidence 47889998765 3442 344555555666432 3433 233345555445555566665533 35566 Q ss_pred HHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhc-chhhhhhhhhhhhhh---------- Q lcl|Aclame:pro 435 MNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQV-IRPDQVAARLNTEPD---------- 503 (695) Q Consensus 435 l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~-i~~~e~r~~L~~~~~---------- 503 (695) |++++.-++.--++.. +...|.|......+ ...++.+.++.+.|. ++...+++.+..... T Consensus 329 ln~li~~l~~~N~~~~-~~p~f~~~e~ee~~--------~~~a~~~~~L~~~G~~i~~~~~~e~~Gip~~~~~e~~~~~~ 399 (491) T protein:vir:79 329 MNMLIRWICDLNFDGA-ARPVFDMWEQEQVD--------EIQAGRDEKLTRAGARFTPAYFKRAYNLQDGDLDERPLPVS 399 (491) T ss_pred HHHHHHHHHHhcCCCC-CcceEeecCcCchh--------HHHHHHHHHHHhCCCccCHHHHHHHhCCCCCCCCccccCcC Confidence 6677766665555433 23455555433221 223344444444432 222222222211000 Q ss_pred ---------------------hhhhhhhhhhhhhhhh-hhhhhh-hhhhhhhhhhhhccc-ccccccCCCccch---hh- Q lcl|Aclame:pro 504 ---------------------GPYAGKLDANDDPGVP-ADDDID-GVLTYVQRLAEGGDT-GAPGGARAGATAP---PT- 555 (695) Q Consensus 504 ---------------------~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~- 555 (695) ................ ...... ..-..+......... ............. .. T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~s~~e~~~~L~~l~~~~d~~~l~~~l~~a 479 (491) T protein:vir:79 400 AVDAVGAASFAEFEAPDQDALDAALNALSARDLNADAQALVAPLLKRIANGASADELLGMLAELYPSLDTDALQERLARA 479 (491) T ss_pred cccccccccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCHHHHHHHHHHH Confidence 0000000000000000 000000 000000000000000 0000000000000 00 Q ss_pred --hhhhhhcccc Q lcl|Aclame:pro 556 --VANVNANVKP 565 (695) Q Consensus 556 --~~~~~~~~~~ 565 (695) .......... T Consensus 480 ~~~A~l~Gr~~a 491 (491) T protein:vir:79 480 IFVANLWGRLHA 491 (491) T ss_pred HHHHHHhhhccC Confidence 0000000000 No 221 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=80.33 E-value=0.096 Score=26.17 Aligned_cols=421 Identities=11% Similarity=0.010 Sum_probs=140.9 Q ss_pred hhhccccccccccccccc-----chhhhhhhcccccCCCCcccccccccccccccccchh-hhhhhccCCCCchHHHHHH Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEP-----SPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMD-ALSFVTSSGFPGFPTLVLL 119 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~gy~~~a~~ 119 (695) |.+|.+.... .+|..+. ++++... ......-..-++. +...+ -|.+ +.+ ...-..+ T Consensus 1 m~k~~~k~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~--~~~~~~iLr~--~~~---~~ly~~m 62 (448) T protein:vir:79 1 MAKRGRKPKE-LVPGPGSIDPSDVPKLEGA----------SVPVMSTSYDVVV--DREFDELLQG--KDG---LLVYHKM 62 (448) T ss_pred CCCCCCCCcc-ccCcccccccccchhhhhh----------hhhhccccccccc--ccchhHhhcc--ccc---hHHHHHH Confidence 6666653211 1111110 1111111 1000000000111 11000 0100 111 1111112 Q ss_pred HhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh-------hchHHHHHHHHH Q lcl|Aclame:pro 120 AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER-------LRIRDAVRTTVI 192 (695) Q Consensus 120 ~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~-------l~~~~~~~~a~~ 192 (695) ....-+..+++.--.-.+..-++|. ....+..+....+.+.+.++. ..+.+.+.+++- T Consensus 63 ~~D~hi~s~l~~Rk~av~~~~w~v~---------------p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~ld 127 (448) T protein:vir:79 63 LSDGTVKNALNYIFGRIRSAKWYVE---------------PASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYEN 127 (448) T ss_pred hhChHHHHHHHHHHHHHhcCCceEe---------------cCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHH Confidence 2344444444443333332222332 111111112222333333332 233344555444 Q ss_pred hcCccceEEEEEEEc--CCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEch Q lcl|Aclame:pro 193 HDQAFGRAHPYFKIK--GDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHA 270 (695) Q Consensus 193 ~~Rl~G~~~i~i~~~--~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~ 270 (695) +.+||.++.=+.-. .++. + .|-.+. .+..-.+..|. +++..- .......++.. +. .....+..+.. T Consensus 128 -a~~~G~s~~Eivw~~~~~g~-~-~~~~l~--~r~~~~~~~f~-~~~d~~-l~~~~~~~~~~---~~--~~~~~~~~lP~ 195 (448) T protein:vir:79 128 -AYIYGMAAGEIVLTLGADGK-L-ILDKIV--PIHPFNIDEVL-YDEEGG-PKALKLSGEVK---GG--SQFVSGLEIPI 195 (448) T ss_pred -hhhhcceeEEEEeeecCCCc-e-eccccc--ccCCcccccee-eecCCc-eEEeecCCccc---cc--ccCCCcccccc Confidence 88999999765532 2332 1 111000 00000111111 111100 00010111110 00 00122334444 Q ss_pred hhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHH Q lcl|Aclame:pro 271 TRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAEL 348 (695) Q Consensus 271 SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~ 348 (695) .+++++... ...+.+|.+++..||-...--..+..--+..+.++++ .+.|.+-.. ...+++...-+++ T Consensus 196 ~~~i~~~~~-------~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vgky~~ga---~~~~~~~~~l~~a 265 (448) T protein:vir:79 196 WKTVVFLHN-------DDGSFTGQSALRAAVPHWLAKRALILLINHGLERFMIGVPTLTIPKSV---RQGTKQWEAAKEI 265 (448) T ss_pred ceEEEEecC-------ccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCC---CcCHHHHHHHHHH Confidence 555554322 1235679999999988765555555555778888885 455554211 1112233333455 Q ss_pred HHHhc-CCceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccC-cc----cccCcchHHH-HHH Q lcl|Aclame:pro 349 INRYR-DNRNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGIT-PT----GLNASSEGEI-RVW 419 (695) Q Consensus 349 ~~~~~-~n~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~s-p~----Glnatge~D~-~ny 419 (695) +..++ +..+..++. .+.+++.+++.-+ ....+++..-++||-+ ++|+. ++ |-++.+.++. ... T Consensus 266 v~~i~~g~~a~~iiP-~~~~ie~~ea~~~~~~~~~~i~~~d~~Isk~-------iLGqtlTs~~~~g~~~~~~~~~~~v~ 337 (448) T protein:vir:79 266 VKNFVQKPRHGIILP-DDWKFDTVDLKSAMPDAIPYLTYHDAGIARA-------LGIDFNTVQLNMGVQAINIGEFVSLT 337 (448) T ss_pred HHHHhcCCceEEEec-CCceEEEEecCCCcccHHHHHHHHHHHHHHH-------HhhhhhccccccchhhhhhhhHHHHH Confidence 55443 344455665 4678888876633 2334444444444422 23443 11 2211111221 122 Q ss_pred HHHHHHHHhhhhhHHHHH-HHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhh Q lcl|Aclame:pro 420 YDYVRAYQRNALQQLMND-VIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARL 498 (695) Q Consensus 420 yd~i~~~Qe~~l~p~l~~-l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L 498 (695) .+.+++.-+. |...|++ |+.-++.--||...+-=.|+|.... ..++ +..++.+.+++..+.....-.++.+ T Consensus 338 ~~~~~aDa~~-i~~tln~~li~~l~~lNfg~~~~~P~~~f~~~e------~~Dl-~~~a~~~~~l~~~~~~~~~~~~~~~ 409 (448) T protein:vir:79 338 QQTIISLQRE-FASAVNLYLIPKLVLPNWPSATRFPRLTFEMEE------RNDF-SAAANLMGMLINAVKDSEDIPTELK 409 (448) T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCcCCCcEEEecCCC------hHHH-HHHHHHhhhhhccchhhHHHHHHhh Confidence 2333332222 3344433 4544444345533221144443221 1122 2235555555543322111111110 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhh Q lcl|Aclame:pro 499 NTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNA 561 (695) Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (695) .. + ......... ... ........ .............+++ T Consensus 410 ~~-p-----~~~~~~~~~-a~~-~~~~~~~~----------------~~~~~~~~~~~~~~~~ 448 (448) T protein:vir:79 410 AL-I-----DALPSKMRR-ALG-VVDEVREA----------------VRQPADSRYLYTRRRR 448 (448) T ss_pred cC-C-----CCCCCcccc-ccC-CCCccccc----------------ccCCccccchhhcccC Confidence 00 0 000000000 000 00000000 0000000000000000 No 222 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=78.27 E-value=0.12 Score=25.71 Aligned_cols=327 Identities=11% Similarity=0.033 Sum_probs=124.7 Q ss_pred EEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEE--E---cceEEchhhEEE Q lcl|Aclame:pro 201 HPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW--M---IGTEVHATRLHT 275 (695) Q Consensus 201 ~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~--i---~~~~iH~SRli~ 275 (695) +.=|.-+.++. .+ .++.|...++..+. .+.. ++ +-+.-...+ + .+..+.+.+.|. T Consensus 1 v~Eivw~~~~g-----------~~---~~~~l~~r~~~~~~--~f~~-~~---~~~l~~~~~~~~~g~~~~~lp~~kfi~ 60 (355) T protein:vir:78 1 MFEQVYRIENG-----------RA---RLGKLAWRPPRTIS--RFDV-AP---DGGLVAIEQWGVFGKATVRIPVDRLVV 60 (355) T ss_pred CeEEEEEeeCC-----------eE---EEeeeeecCcccee--eeee-cc---CCceeEEEecCCCCCCcceeccCCEEE Confidence 00011010110 00 12233333332111 1110 11 111100111 1 234566777666 Q ss_pred ecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHh--ccceeeech-HH-------hhcchHHHHHHHH Q lcl|Aclame:pro 276 IVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQF--SVSGILMDL-AQ-------ALMPGANVDLSMR 345 (695) Q Consensus 276 ~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~--~~~v~k~~~-~~-------~l~~~~~~~l~~r 345 (695) +.... ...+.+|.+++..||-...--.....--+..+.++ .+.+.+.+- .. .+.......-... T Consensus 61 ~~~~~------~~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l 134 (355) T protein:vir:78 61 FVNER------EGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEG 134 (355) T ss_pred EEeCC------CCCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHH Confidence 55432 23456899999999987765555666667778877 667776541 11 1111111112223 Q ss_pred HHHHHHhcCCc-eeEEEEcCCceeEEEeccc--CChHHHHHHHHHHHHhhhcCCceeeeccC-cc------cccCcchHH Q lcl|Aclame:pro 346 AELINRYRDNR-NILFLDKATEEFFQFNTPL--SGLDALQAQAQEQMSAVSHIPLIKLLGIT-PT------GLNASSEGE 415 (695) Q Consensus 346 ~~~~~~~~~n~-~~~~ld~~~e~~~~~~~~l--sgl~~~~~~~~~~iaaas~iP~t~L~G~s-p~------Glnatge~D 415 (695) .+++...++.. +..++. .+.+++.+++.- ++...+++..-++||-+. +|+. +. |=+|-|+.- T Consensus 135 ~~~~~~i~~g~~a~~iip-~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~i-------LGqtlTs~~~~~gGS~Alg~vh 206 (355) T protein:vir:78 135 LQLAKEFRAGEAAGGYIP-HGANFTLTGVQGKLPEMDGPIRYHDEQIARAV-------LAHFLTLGGDKSTGSYALGDTF 206 (355) T ss_pred HHHHHHhhCCcceeEeec-CCceEEEeecCCCcccHHHHHHHHHHHHHHHH-------hhhhhccccCCccchhhHHHHH Confidence 34444444332 345565 467888887553 245566666666665432 3432 21 222335544 Q ss_pred HHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhh Q lcl|Aclame:pro 416 IRVWYDYVRAYQRNALQQLMN-DVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQV 494 (695) Q Consensus 416 ~~nyyd~i~~~Qe~~l~p~l~-~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~ 494 (695) ....-+.+++.... |...|+ .|+.-++.--||..+..-.|+|..... . ....++.+..++..|....... T Consensus 207 ~~v~~~~~~aD~~~-i~~~ln~~li~~l~~lN~~~~~~~P~~~~~~~~~-~-------~~~~a~~~~~l~~~G~~~~~~~ 277 (355) T protein:vir:78 207 ASFFTGSLNAVMKH-IADVTQQHVVEDLVDQNWGPEEPAPRLVPAQLGK-E-------QPVTAEAIRALVECGAFTADPE 277 (355) T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCCCEEEecCcCh-h-------HHHHHHHHHHHHhCCCccccHH Confidence 56666666665544 445554 466666555565443333456643221 1 1234677888888887655332 Q ss_pred -hhhhhhhhhhhhhhhhhhhhhhhhhhhhh-hhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhccccccccccC Q lcl|Aclame:pro 495 -AARLNTEPDGPYAGKLDANDDPGVPADDD-IDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQD 572 (695) Q Consensus 495 -r~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (695) ...+...-. .................. ................................. .++...+.+.++-. T Consensus 278 ~~~~~~e~~g--ip~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~-~~~~~~~~~~~~~~- 353 (355) T protein:vir:78 278 LEKDLRARYG--LPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPL-RRRPRHPAHRRCAP- 353 (355) T ss_pred HHHHHHHHhC--CCCCCCCCcccCCccccccccccccccCCccccccccccCCCCCChhhhHHH-HHHhhccccCCCCC- Confidence 122221111 100000000000000000 000000000000000000000000000000000 00000000000000 Q ss_pred ceEEEEEEEEEcCC Q lcl|Aclame:pro 573 AAMRAAGAVYVVDG 586 (695) Q Consensus 573 ~~~~~~~~i~~~~~ 586 (695) +| T Consensus 354 ------------~~ 355 (355) T protein:vir:78 354 ------------DG 355 (355) T ss_pred ------------CC Confidence 00 No 223 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=71.88 E-value=0.19 Score=24.54 Aligned_cols=399 Identities=12% Similarity=0.047 Sum_probs=163.8 Q ss_pred ccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHH----HhChhhhh Q lcl|Aclame:pro 52 LNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLL----AQLPEYRA 127 (695) Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~----~~~~~~r~ 127 (695) ++-+ ...+|.|++..-..-.+ .+ .+. +.+|. +..+. .-..|--=|+.+.+| +...-+.. T Consensus 1 ~~~~---~~~~p~~~~~~~~~~~~-~~---~~~--~~g~~-~~D~~-------lr~~gg~~~~~~~l~~~m~e~D~~v~s 63 (446) T protein:vir:98 1 MNME---VRNAPTPAIRRRTIYAM-EH---LGL--ATSYL-SEDGG-------YKRAGKPTYQQLSAWDEAAQTEPIIAQ 63 (446) T ss_pred Cccc---ccCCCchhhhhhhhhcc-cc---chh--hcccC-CcchH-------hhhcCCChHHHHHHHHHHHhcchHHHH Confidence 1111 11122222211000000 00 000 11111 00000 000010112333333 12344444 Q ss_pred HhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhchHHHHHHHHHhcCccceEEEEEEEc Q lcl|Aclame:pro 128 MHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIK 207 (695) Q Consensus 128 ~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~a~~~~Rl~G~~~i~i~~~ 207 (695) +.+.--.-.++.=++| . ..+.+..+.+++.++++.+...+.+.+ .+-.||-++.=+.-. T Consensus 64 ~l~~Rk~av~~~~w~V---------------~-----p~~~~~a~~v~~~l~~~~~~~~~~~~l-dai~~G~s~~Eivw~ 122 (446) T protein:vir:98 64 GLDSIALSVLNKVGPY---------------Q-----HGDKRIKKFIDDQLRNRAKTWISHCVK-SIMTYGFSLSEQIYA 122 (446) T ss_pred HHHHHHHHhhcCCcee---------------c-----CccHHHHHHHHHHHhhcCchhHHHHHH-HHHhhCceeeeEEEe Confidence 3333222222221222 1 123456667888888887655555543 355689888766543 Q ss_pred CCCchhccccCCccccccCcceEEEEEecchhc-------------cccceeccc--ccc-cccCCceeEEE---cceEE Q lcl|Aclame:pro 208 GDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWV-------------TPNNYNSIN--PVA-DDFYKPSTWWM---IGTEV 268 (695) Q Consensus 208 ~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i-------------~p~~~~~~d--p~s-~~yg~P~~y~i---~~~~i 268 (695) ..+. ...|-... . .+.++++....|+ +...+...+ |.. -.++.|..+.- .+..| T Consensus 123 ~~~g-~~~p~~~~-----d-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i 195 (446) T protein:vir:98 123 HGAR-DNMPATVL-----D-DIVNYHPLQVMLIANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRL 195 (446) T ss_pred eccc-ccccchhh-----c-cccccccccceeeeccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccc Confidence 2211 11222110 0 1112222221121 111110000 000 01122222211 12456 Q ss_pred chhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeec-hHH--hhcchH----H Q lcl|Aclame:pro 269 HATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMD-LAQ--ALMPGA----N 339 (695) Q Consensus 269 H~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~-~~~--~l~~~~----~ 339 (695) ...+++.+.-.. ...+.+|.|++..||-...=-..+..--+..+.++.+ .+.|.. ++. ...+.. + T Consensus 196 P~~kfi~~~~~~------~~~~p~G~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~ 269 (446) T protein:vir:98 196 PSHKRLFINYNT------KGNNPWGTSCLTSVLDYSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEIT 269 (446) T ss_pred cccceEEEEecC------CCCCccccchHHHHHHHHHHHHhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHH Confidence 677766665432 3445789999999988765445555555666777664 455653 111 111111 1 Q ss_pred HHH-HHHHHHHHHhcCCceeEEE----EcCCceeEEEecccCC---hHHHHHHHHHHHHhhhcCCceeeeccCcc--ccc Q lcl|Aclame:pro 340 VDL-SMRAELINRYRDNRNILFL----DKATEEFFQFNTPLSG---LDALQAQAQEQMSAVSHIPLIKLLGITPT--GLN 409 (695) Q Consensus 340 ~~l-~~r~~~~~~~~~n~~~~~l----d~~~e~~~~~~~~lsg---l~~~~~~~~~~iaaas~iP~t~L~G~sp~--Gln 409 (695) ..+ .+-++.+....+ .+..++ +-++-+++.++..=++ ...+++..-.+||-+.--....| |++.+ |=+ T Consensus 270 ~~~~~~L~~av~~~~~-da~~ii~~~~~P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl-~~~~~~~GS~ 347 (446) T protein:vir:98 270 TTIAEQAEDALRRLST-DSGLVLTQLSKEQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLV-QNRETTFGTG 347 (446) T ss_pred HHHHHHHHHHHHhccc-cceeeeecccCCCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccccc-cccccccchh Confidence 111 112333433333 344343 1234567777665443 45666666677876655443333 54432 333 Q ss_pred CcchHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHhcCCCCCceeE-EeccccccchhHHHHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 410 ASSEGEIRVWYDYVRAYQRNALQQLM-NDVIVMIQLSLFGAVDPSIKW-QWNALRELDDLEVAESRYKQAQSDVLYVQEQ 487 (695) Q Consensus 410 atge~D~~nyyd~i~~~Qe~~l~p~l-~~l~~~l~~s~~g~~~~d~~~-~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g 487 (695) |-|+.-...+.|.+++..+. |...+ ..|+.-++.--||....-... ...|-.... |..++. ..++++.+++..| T Consensus 348 ala~vh~~V~~d~~~aDa~~-i~~tln~~Li~~l~~lNf~~~~~~~~~~~~~~~~~~~--e~eDl~-~~a~~~~~L~~~G 423 (446) T protein:vir:98 348 RASEIQLELFDGKINSIFDT-VIHAFTEQVIGNLIRLNFDPALYPLASNTGYITRLPG--RATDLA-ALVEAIKQMHDMG 423 (446) T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCccccccccccccceeccC--ChhhHH-HHHHHHHHHHhCC Confidence 44554556677777776655 33334 346655554445432111111 111112222 333433 4588999999999 Q ss_pred cchhh---hhhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 488 VIRPD---QVAARLNTEPDGPYAGKLD 511 (695) Q Consensus 488 ~i~~~---e~r~~L~~~~~~~~~~~~~ 511 (695) ...+. .+++.+..-. ..... T Consensus 424 ~~~p~~~~~ire~~giP~----~~~~~ 446 (446) T protein:vir:98 424 FLVDGDKDHIRSITGLPD----AISST 446 (446) T ss_pred ccccccHHHHHHHhCcCC----CCCCC Confidence 76432 2333332110 00000 No 224 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=62.12 E-value=0.34 Score=23.15 Aligned_cols=459 Identities=10% Similarity=-0.027 Sum_probs=167.1 Q ss_pred hhhccccc--cccccccccc-chhhhhhhcccccCCCCcccccccccccccccccch-hhhhhhccCCCCchHHHH-HH- Q lcl|Aclame:pro 46 MGRRGALN--ALDAAPVAEP-SPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSM-DALSFVTSSGFPGFPTLV-LL- 119 (695) Q Consensus 46 ~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~gy~~~a-~~- 119 (695) |++---.. ..+..+...+ .+++.... ... ........|+... ..+.-..+..+.-|..|. .+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~ 68 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLA-----------KEF-ANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDME 68 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhh-----------hhh-cccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHH Confidence 22211100 0000000011 01111000 000 0000111111111 111112222222222211 11 Q ss_pred HhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHhhc-hHHHHHHHHHhcCccc Q lcl|Aclame:pro 120 AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLR-IRDAVRTTVIHDQAFG 198 (695) Q Consensus 120 ~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~l~-~~~~~~~a~~~~Rl~G 198 (695) ....-+..+++..-.-.+..-++|.... ..+..+.+..+.+++.+.++. +.+.+.+++- +.+|| T Consensus 69 e~D~~i~s~l~~Rk~av~~~~w~I~p~~--------------~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~ld-a~~~G 133 (528) T protein:vir:10 69 ERDAHLFAEMSKRKRAVLGLDWTIEPPR--------------NASAAEKADAEYLHELLLDLEGIEDLMLDCMD-GVGHG 133 (528) T ss_pred hhChHHHHHHHHHHHHHhcCCceEecCC--------------CCCHHHHHHHHHHHHHHhCCccHHHHHHHHHh-hhhhc Confidence 1344444444443333332222332110 111223344556777777775 4455555555 89999 Q ss_pred eEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEEecC Q lcl|Aclame:pro 199 RAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVS 278 (695) Q Consensus 199 ~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~~~~ 278 (695) .++.=|.-..++.. ..++.|...++.|+.....+ ...+... .-.+.|..+.+-+.+.+.. T Consensus 134 ~s~~Ei~w~~~~g~--------------~~~~~~~~r~~~~f~~~~~~-----~~~l~~~-~~~~~g~~l~~~k~iv~~~ 193 (528) T protein:vir:10 134 YSAIELDWSLQGRE--------------WLPQAFDHRPQSWFQLNPDD-----QDELRLR-DNSIAGEVLQPFGWIMHKP 193 (528) T ss_pred ceeEEEEEeecCCc--------------eeEEEeeeecccceeeccCC-----CcEEecc-CCCCCceeecCCCeEEEee Confidence 99987764333221 12445556666555321110 0001000 0112455666666666554 Q ss_pred CcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 279 RPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANVDLSMRAELINRYRDNR 356 (695) Q Consensus 279 ~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~n~ 356 (695) .. ...+.+|.+++..||-...--..+..--+..+.++++. +.|.+- .. .+++...-++.+..+.++ T Consensus 194 ~~------~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~--~a---~~~ek~~L~~al~~i~~~- 261 (528) T protein:vir:10 194 RS------RSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPIRLGKYPP--GT---PDEEKVTLLRAVTGLGHA- 261 (528) T ss_pred cC------CCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCC--CC---CHHHHHHHHHHHHHHhhC- Confidence 32 12345699999999887765555555567788888864 445441 11 122333445555555544 Q ss_pred eeEEEEcCCceeEEEecccCCh---HHHHHHHHHHHHhhhcCCceeeeccCc--------ccccCcchHHHHHHHHHHHH Q lcl|Aclame:pro 357 NILFLDKATEEFFQFNTPLSGL---DALQAQAQEQMSAVSHIPLIKLLGITP--------TGLNASSEGEIRVWYDYVRA 425 (695) Q Consensus 357 ~~~~ld~~~e~~~~~~~~lsgl---~~~~~~~~~~iaaas~iP~t~L~G~sp--------~Glnatge~D~~nyyd~i~~ 425 (695) +..++. .+.+++.++.+=++. ..+++..-.+||-+ ++|++- +|=+|-|+.-.....+.+.+ T Consensus 262 ~~~iiP-~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~-------iLGqtlTs~~~~g~~gS~Alg~vh~~v~~di~~a 333 (528) T protein:vir:10 262 AAGIIP-ESMSIDFQEASKGSAEPFMAMMRWCDDSMSKA-------ILGGTLTSQTSESGGGAYALGQVHNEVRHDLLAA 333 (528) T ss_pred cEEEec-CCceeEEeecCCCChhHHHHHHHHHHHHHHHH-------HhhhhhhccccccccchhhhHHHHHHHHHHHHHH Confidence 455665 478899998754443 23444444455532 235432 12222233233445555555 Q ss_pred HHhhhhhHHHH-HHHHHHHHHhcCCC-CC--ceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhc-chhhhhhhhhhh Q lcl|Aclame:pro 426 YQRNALQQLMN-DVIVMIQLSLFGAV-DP--SIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQV-IRPDQVAARLNT 500 (695) Q Consensus 426 ~Qe~~l~p~l~-~l~~~l~~s~~g~~-~~--d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~-i~~~e~r~~L~~ 500 (695) .... +...|+ .|+.-++.--|+.. +. --.|.|......+-+++ ++.+.++...|. ++...+++.+.. T Consensus 334 Da~~-i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~-------a~~~~~L~~~G~~i~~~~i~e~~gi 405 (528) T protein:vir:10 334 DARQ-LAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKDRADLAAM-------ATSLPPLVKLGVQVPVNWVQEQLGI 405 (528) T ss_pred HHHH-HHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCcccHHHH-------HHHHHHHHhCCCCCCHHHHHHHhCC Confidence 4333 444454 35555554444421 11 12455554444333333 445555555554 444444444432 Q ss_pred hhhhhh---------------------h-------------hhh--hhhhhhhhhhhhhhhhhh------hhhhhhhhhc Q lcl|Aclame:pro 501 EPDGPY---------------------A-------------GKL--DANDDPGVPADDDIDGVL------TYVQRLAEGG 538 (695) Q Consensus 501 ~~~~~~---------------------~-------------~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 538 (695) ...... . ... .................. .....+.+.. T Consensus 406 p~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~s~e 485 (528) T protein:vir:10 406 PLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQEALDQVLASLPAQDMQNQADSLVAPLLDVISRGGSEA 485 (528) T ss_pred CCCCCCcccccCCCcccccccCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH Confidence 100000 0 000 000000000000000000 0000000000 Q ss_pred cccccc--ccCCCccchhhhhhhhhccccccccccCceEEEEEEEEEcCC Q lcl|Aclame:pro 539 DTGAPG--GARAGATAPPTVANVNANVKPREAGAQDAAMRAAGAVYVVDG 586 (695) Q Consensus 539 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 586 (695) ...... ................... .-.......+.-..++ T Consensus 486 e~~~~L~~l~~~~d~~~l~~~l~~a~~-------~A~l~G~~~~~~e~~~ 528 (528) T protein:vir:10 486 ELLGALAEAFPDMDDSALADALHRLLF-------VADTWGRLNGTLDRID 528 (528) T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH-------HHHHhhhhhccccccC Confidence 000000 0000000000000000000 0000000000111111 No 225 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=47.77 E-value=0.69 Score=21.46 Aligned_cols=445 Identities=9% Similarity=0.001 Sum_probs=151.4 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhhhhhhccCCCCchHHHHHHHhChhh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~~~~~~ 125 (695) |.. ++..+++- +|..+..- +.. ....+.-......-.-|.+ . -++.+-..+....-+ T Consensus 1 ~~~-----~~~~~~gl-~p~rl~~i-------~~~-----~~~~~~~~~~~~~~~~Lr~--~---~~~~ly~~m~~D~hi 57 (488) T protein:vir:95 1 MAD-----ITETQESL-PPFRMGEV-------GSL-----GLKVKNGRIYEEPRQALRF--P---ESIKTFQLMMRDPAV 57 (488) T ss_pred CCC-----ccccCCCC-CHHHHHHH-------HHH-----hhccccchhhccchhhhcc--c---chHHHHHHHhhChHH Confidence 111 11111111 11111110 000 0000000000000000000 0 001111111123334 Q ss_pred hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCH---HHHHHHHHHHHhhch--HHHHHHHHHhcCccceE Q lcl|Aclame:pro 126 RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDG---DQLKQINDEIERLRI--RDAVRTTVIHDQAFGRA 200 (695) Q Consensus 126 r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~---~~~~~i~~~~~~l~~--~~~~~~a~~~~Rl~G~~ 200 (695) ..+++.--.-.+..=++|. ....+..+. +..+.++..++.+.. .+.+.+++ .+.+||.+ T Consensus 58 ~s~l~~Rk~av~~~~w~v~---------------p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s 121 (488) T protein:vir:95 58 AASVNIIKMFVRKVNWRFV---------------PPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFC 121 (488) T ss_pred HHHHHHHHHHHhcCCceEe---------------cCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHH-Hhhcccce Confidence 4433333222222112332 111112121 223456666776653 35566666 48899998 Q ss_pred EEEEEEcCCCchhccccC-CccccccCcceEEEEEecch---h--ccccc----eecccccccccCCceeEEE---cceE Q lcl|Aclame:pro 201 HPYFKIKGDDQIMDTPLV-PRPYTVPKGSFQGLRVVEPY---W--VTPNN----YNSINPVADDFYKPSTWWM---IGTE 267 (695) Q Consensus 201 ~i~i~~~~d~~~~~~Pl~-~~~~~i~~g~l~~l~v~d~~---~--i~p~~----~~~~dp~s~~yg~P~~y~i---~~~~ 267 (695) +.=+.-+.+......... .+...+ .++.|.+..++ | +.+.. ...+++....+..|..|.. .+.. T Consensus 122 ~~Eivw~~~~~~~~~~~~~~~dg~~---~~~~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (488) T protein:vir:95 122 VNEKVYKKRQGKKGKYQSKFDDGLI---GWAKLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRK 198 (488) T ss_pred eeeeeeeccccccccccccccCCee---eeeeeeecCcccccceeeccCCCceeeccccccccccccccccccccccccc Confidence 876654322111111110 000011 12223332221 1 11110 0011222222333433332 2456 Q ss_pred EchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHh--ccceeeec-hH-HhhcchHHHHHH Q lcl|Aclame:pro 268 VHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQF--SVSGILMD-LA-QALMPGANVDLS 343 (695) Q Consensus 268 iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~--~~~v~k~~-~~-~~l~~~~~~~l~ 343 (695) +.+.+.+.+.... ...+.+|.+++..||-...--..+..--+..+.++ .+.+.+.. .. ..-+.+....+. T Consensus 199 lP~~kfi~~~~~~------~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~ 272 (488) T protein:vir:95 199 LPRAKFMLFKYDD------EYGNPEGRSPLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFV 272 (488) T ss_pred ccccceEEEeecC------CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHH Confidence 7777776665432 23456799999998877643333334344555554 55555542 11 111111112222 Q ss_pred HHH-HHHHHhcCC--ceeEEEEcCCce-------eEEEecccC---ChHHHHHHHHHHHHhhhcCCceeeeccC------ Q lcl|Aclame:pro 344 MRA-ELINRYRDN--RNILFLDKATEE-------FFQFNTPLS---GLDALQAQAQEQMSAVSHIPLIKLLGIT------ 404 (695) Q Consensus 344 ~r~-~~~~~~~~n--~~~~~ld~~~e~-------~~~~~~~ls---gl~~~~~~~~~~iaaas~iP~t~L~G~s------ 404 (695) +.+ ++......+ .|+++=.+.+-+ ++.++..=+ ....+++..-.+||-+. +|+. T Consensus 273 ~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~i-------LGqtLT~~~~ 345 (488) T protein:vir:95 273 QYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAF-------MSDVLAMGQS 345 (488) T ss_pred HHHHHHHHHhhccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHH-------hccccccccC Confidence 222 222222221 222221111111 222222212 23456666666676443 3442 Q ss_pred cccccCcchHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 405 PTGLNASSEGEIRVWYDYVRAYQRNALQQLMN-DVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLY 483 (695) Q Consensus 405 p~Glnatge~D~~nyyd~i~~~Qe~~l~p~l~-~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~ 483 (695) -+|-+|.|+.-.....+.+.+.... |...|+ .|+.-++.--||.....-.|+|......+ + +..++++.++ T Consensus 346 ~~Gs~Al~~vh~ev~~~i~~aDa~~-i~~tln~~li~~l~~~Nfg~~~~~P~~~~~~~e~~D------l-~~~ae~~~~L 417 (488) T protein:vir:95 346 KYGSFSLADSKTSLLAMSVDILLKQ-IKNVINRDLVAQTYALNMWDDEEHVQITYDDIETPD------L-EAIGSYIQKT 417 (488) T ss_pred cchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCccEEEecCcChhh------H-HHHHHHHHHH Confidence 2344455554555666666665433 344443 45555554445543322345554332222 2 2446777888 Q ss_pred hhhhcchhhhh-hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhhhhhhhc Q lcl|Aclame:pro 484 VQEQVIRPDQV-AARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNAN 562 (695) Q Consensus 484 ~~~g~i~~~e~-r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (695) +..|...++.. ...+... ++....... ............ ...+......... ....... . T Consensus 418 ~~~G~~i~~~~~~~~i~e~--~gip~~~~~-e~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~--~------- 478 (488) T protein:vir:95 418 VAVGALEVDKELSNKLREH--IGLPPADES-QPVSEKLSPNSQ------SRSGDGYKTAGEG-TAKTPSA--K------- 478 (488) T ss_pred HhCCCccccHHHHHHHHHH--hCCCCCCCC-ccccccCCCCCC------CCCCcccCCCccc-CCccccc--c------- Confidence 88887665321 1222211 111100000 000000000000 0000000000000 0000000 0 Q ss_pred cccccccccCceEEEEEEEEEcCCe Q lcl|Aclame:pro 563 VKPREAGAQDAAMRAAGAVYVVDGK 587 (695) Q Consensus 563 ~~~~~~~~~~~~~~~~~~i~~~~~~ 587 (695) ...+-+..++ T Consensus 479 ---------------~~~~a~~~~~ 488 (488) T protein:vir:95 479 ---------------DPSTANKANK 488 (488) T ss_pred ---------------cchhhhhccC Confidence 0000011111 No 226 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=45.17 E-value=0.78 Score=21.18 Aligned_cols=425 Identities=10% Similarity=-0.021 Sum_probs=136.8 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCcccccccccccccccccchhh-hhhhccCCCCchHHHHHHHhChh Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDA-LSFVTSSGFPGFPTLVLLAQLPE 124 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~gy~~~a~~~~~~~ 124 (695) |+++++....- .|... ++.....+ ..++.......-..-++. +..-+. +.+ +.+ ..+-..+....- T Consensus 1 m~kk~~k~~~~-~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~g~~--~~~~~~iLr~--~~~---~~ly~~m~~D~h 67 (448) T protein:vir:77 1 MAKRGRKPKEL-VPGPG---SIDPSDVP--KLEGASVPVMSTSYDVVV--DREFDELLQG--KDG---LLVYHKMLSDGT 67 (448) T ss_pred CCCCCCCCccc-CCccc---ccchhhhh--hhccchhhhccccccccc--ccchhHhhcc--ccc---hHHHHHHhhChH Confidence 77776532111 11111 11111000 111111111111111111 111111 110 001 111111122333 Q ss_pred hhhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHHHHHHHHHHHh-------hchHHHHHHHHHhcCcc Q lcl|Aclame:pro 125 YRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIER-------LRIRDAVRTTVIHDQAF 197 (695) Q Consensus 125 ~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~-------l~~~~~~~~a~~~~Rl~ 197 (695) +..+++..-.-.+.. .|.+.....+..+.+..+.+++.+.. +.+.+.+.+++ .+.+| T Consensus 68 i~s~l~~Rk~av~~~---------------~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~l-da~~~ 131 (448) T protein:vir:77 68 VKNALNYIFGRIRSA---------------KWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYE-NAYIY 131 (448) T ss_pred HHHHHHHHHHHHhcC---------------CceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHH-Hhhhh Confidence 333333322222211 12222111111122222333333332 24455666665 48899 Q ss_pred ceEEEEEEEc--CCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEEEcceEEchhhEEE Q lcl|Aclame:pro 198 GRAHPYFKIK--GDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTEVHATRLHT 275 (695) Q Consensus 198 G~~~i~i~~~--~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~i~~~~iH~SRli~ 275 (695) |.++.=+.-+ .|+. + .|-.+. .+..-.+..|..-....+. .....++. -+.+ ....+..+...++++ T Consensus 132 G~s~~Eivw~~~~dg~-~-~~~~l~--~r~~~~~~~f~~~~~~~l~--~~~~~~~~---~~~~--~~~~~~~lP~~~~i~ 200 (448) T protein:vir:77 132 GMAAGEIVLTLGADGK-L-ILDKIV--PIHPFNIDEVLYDEEGGPK--ALKLSGEV---KGGS--QFVNGLEIPIWKTVV 200 (448) T ss_pred cceeEEEEEeecCCCc-e-eecccc--ccCCCccceeeeecCCceE--EEecCCcc---cccc--cCCCccccccceEEE Confidence 9999765532 2322 1 111110 0011111222111111000 00001110 0000 011223344444554 Q ss_pred ecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhcc--ceeeechHHhhcchHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 276 IVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSV--SGILMDLAQALMPGANVDLSMRAELINRYR 353 (695) Q Consensus 276 ~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~--~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~ 353 (695) +... ...+.+|.+++..||-...-=..+..--+..+.++++ .+.|.+-. +...+++...-++++..++ T Consensus 201 ~~~~-------~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vgky~~g---a~~~~~~~~~l~~av~~i~ 270 (448) T protein:vir:77 201 FLHN-------DDGSFTGQSALRAAVPHWLAKRALILLINHGLERFMIGVPTLTIPKS---VRQGTKQWEAAKEIVKNFV 270 (448) T ss_pred EecC-------CcCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeEEecCCC---CCCCHHHHHHHHHHHHHHh Confidence 4321 1235679999999888665444444555667777775 45554311 1112223333345555443 Q ss_pred -CCceeEEEEcCCceeEEEecccC--ChHHHHHHHHHHHHhhhcCCceeeeccC-----cccccCcchHHH-HHHHHHHH Q lcl|Aclame:pro 354 -DNRNILFLDKATEEFFQFNTPLS--GLDALQAQAQEQMSAVSHIPLIKLLGIT-----PTGLNASSEGEI-RVWYDYVR 424 (695) Q Consensus 354 -~n~~~~~ld~~~e~~~~~~~~ls--gl~~~~~~~~~~iaaas~iP~t~L~G~s-----p~Glnatge~D~-~nyyd~i~ 424 (695) +..+..++. .+.+++.+++.-+ ....+++..-.+||-+. +|+. -+|-++.+.++. ....+.+. T Consensus 271 ~g~~a~~iiP-~g~~ie~~ea~~~~~~~~~~i~~~d~~Isk~i-------LGqtlTs~~~~g~~~~~~~~~~~v~~~~~~ 342 (448) T protein:vir:77 271 QKPRHGIILP-DDWKFDTVDLKSAMPDAIPYLTYHDAGIARAL-------GIDFNTVQLNMGVQAVNIGEFVSLTQQTII 342 (448) T ss_pred cCCceEEEec-CCceEEEEecCCCccCHHHHHHHHHHHHHHHH-------hccccccccccchhhhhhhhHHHHHHHHHH Confidence 344445665 4678888876632 34444444444555332 3432 122222222222 22333333 Q ss_pred HHHhhhhhHHHH-HHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhh Q lcl|Aclame:pro 425 AYQRNALQQLMN-DVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPD 503 (695) Q Consensus 425 ~~Qe~~l~p~l~-~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~i~~~e~r~~L~~~~~ 503 (695) +.-+. |...|+ .|+.-++.--||...+-=.|.|......+-+..++...+..+...... .|... T Consensus 343 aDa~~-i~~tln~~Li~~l~~lNfg~~~~~P~~~f~~~e~eDl~~~a~~~~~l~~~~~~~~---~ip~~----------- 407 (448) T protein:vir:77 343 SLQRE-FASAVNLYLIPKLVLPNWPGATRFPRLTFEMEERNDFSAAANLMGMLINAVKDSE---DIPTE----------- 407 (448) T ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCCCCCCCEEEecCCChhhHHHHHHHhHHHHHHHHHHh---cCCcc----------- Confidence 32222 333343 344444433455332222455543333222333333333222111000 00000 Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhh-hhhhhhc Q lcl|Aclame:pro 504 GPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPT-VANVNAN 562 (695) Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 562 (695) ............. ........ ............ ...+.+. T Consensus 408 ~~~~~~~~~~~~~-~~~~~~~~------------------~~~~~~~~~~~~~~~~r~~~ 448 (448) T protein:vir:77 408 LKALIDALPSKMR-RALGVVDE------------------VREAVRQPADSRYLYTRRRR 448 (448) T ss_pred CCcCCCCCchhcc-cccCCCCC------------------CCchhhcchhhHHHHhhhcC Confidence 0000000000000 00000000 000000000000 0000000 No 227 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=37.58 E-value=1.1 Score=20.33 Aligned_cols=434 Identities=12% Similarity=0.071 Sum_probs=153.5 Q ss_pred hhhcccccccccccccccchhhhhhhcccccCCCCccccc-ccccccccccccchhhhhhhccCCCCchHHHHHHH--hC Q lcl|Aclame:pro 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRER-RAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLA--QL 122 (695) Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~gy~~~a~~~--~~ 122 (695) |..-- -.+.|+.. ...+-++.........+. -|-++..|+ +. T Consensus 1 m~~~~---------------------------~q~~p~~~~fp~~~a~wV~~~D~~Rla--------aY~ly~d~y~n~~ 45 (563) T protein:vir:74 1 MPYNH---------------------------KQYDPAKPFLRGGDDNIVDENDKNRVR--------AYDLYENIYLNSA 45 (563) T ss_pred CCccc---------------------------cccCCCcccccccccccCCHHHHHHHH--------HHHHHHHhhcCch Confidence 11100 00000000 000111111111111111 122222222 23 Q ss_pred hhh-----------------hhHhhcchHHHhhCCceeeccchhhhhccCccccccccccCCHHH---HHHHHHHHHhhc Q lcl|Aclame:pro 123 PEY-----------------RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQ---LKQINDEIERLR 182 (695) Q Consensus 123 ~~~-----------------r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~~~~~~~~~---~~~i~~~~~~l~ 182 (695) |.. |++|+..+ | -+..|+++......++++.. .+.|....++=+ T Consensus 46 ~el~~il~G~dr~~~~~ps~r~~V~~~~----~------------~Lg~~~~~~Ve~~~~de~~~~avq~~Lr~~~~~e~ 109 (563) T protein:vir:74 46 ETLKLVLRGDDSVPILMPSGRKIVEAVH----R------------FLGVGFDYLVEPDMGDEGIRQSLNAYFRTTFKREA 109 (563) T ss_pred hhhhhhcCCCceeeeccchHHHHHHHHH----H------------hcCCCcEEecCccccCcchHHHHHHHHHHHHHHhh Confidence 443 34444321 1 12223333222222222222 233455555668 Q ss_pred hHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhcccccee---------------- Q lcl|Aclame:pro 183 IRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN---------------- 246 (695) Q Consensus 183 ~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~---------------- 246 (695) +..++.++.+|+-.-|.++-.+.=+ .++... +=..++.+||.++.|..-. T Consensus 110 l~~~~~~~~r~a~vlGDgvf~l~wD-p~K~~g-------------~R~rv~~vDP~~~fp~~dpd~v~g~~~v~v~~~~~ 175 (563) T protein:vir:74 110 IKAKFTSNKRWGLIRGDAHFYIHAD-PNKKAG-------------ERISVDEVDPRQIFLIEDGSTVVGFHMVDIVQDFR 175 (563) T ss_pred hHHHHHHHHHhhhhhcceeEEEeec-cccccC-------------CCceEeecCCceeeeccCCCCcccceeeecccCCC Confidence 8899999999999999877554422 111100 0011233333332221000 Q ss_pred -cccccccccCC--------------------ceeEEE-----cc-----------eEEchhhE---------------E Q lcl|Aclame:pro 247 -SINPVADDFYK--------------------PSTWWM-----IG-----------TEVHATRL---------------H 274 (695) Q Consensus 247 -~~dp~s~~yg~--------------------P~~y~i-----~~-----------~~iH~SRl---------------i 274 (695) -.||.+--|.. -+.|.. .+ ..+|-+|. + T Consensus 176 ~pdd~~~~~~r~~~~~~~lndeg~~~~~~~~dae~w~lg~wd~r~~~~~~~~~~~~~~~~~~~d~e~~~LP~pi~~iPiv 255 (563) T protein:vir:74 176 SPDDPSKKLARRRTFRRVRNDEGMFTGRISSELTHWTLGNWDDRGAISDEQARRKEQVRSAQHDEEEEELPEPISQLPLY 255 (563) T ss_pred CCcchhccceeeeeeeeeeCCCCCccceeeeccchhccccccccCccchhhhcccchhhhhhhhchhhhccccccCccEE Confidence 00111100000 001111 00 01222222 1 Q ss_pred EecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccceeeechHHhhcchHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 275 TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRD 354 (695) Q Consensus 275 ~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~l~~r~~~~~~~~~ 354 (695) +|.+- .+.+..||.|.|..+..-+....++..-.+-++.-.+..++-++.+.--.+ .-.++.. ++.. T Consensus 256 ~~~ti------p~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~tG~pi~vl~~~~p~d~-~~g~~~~----w~vg-- 322 (563) T protein:vir:74 256 RWRNK------PPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQGLGMYVTNASAPVDP-NTGELTD----WNIG-- 322 (563) T ss_pred EcCCC------CCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcCCCeEEecccccccc-ccccccc----cccC-- Confidence 22222 234568999999988877777666655555455555566666654321110 0011100 1111 Q ss_pred CceeEEEEcCC---ceeEEEec--ccCChHHHHHHHHH-HHHhhhcCCceeeec-----cCcccccCcchHHHHHHHHHH Q lcl|Aclame:pro 355 NRNILFLDKAT---EEFFQFNT--PLSGLDALQAQAQE-QMSAVSHIPLIKLLG-----ITPTGLNASSEGEIRVWYDYV 423 (695) Q Consensus 355 n~~~~~ld~~~---e~~~~~~~--~lsgl~~~~~~~~~-~iaaas~iP~t~L~G-----~sp~Glnatge~D~~nyyd~i 423 (695) -|.++=-.++ --++.+++ +|+++.+-++-+.. .++-.+++|.+-+ | ..++|.. =+-.+.- .+ T Consensus 323 -pG~i~El~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA~-G~vD~~~~~SGiA--LeL~L~P---L~ 395 (563) T protein:vir:74 323 -PMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVAI-GRVDVTSAESGIS--LELQLKP---LL 395 (563) T ss_pred -CceeEeccCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCcceee-cccccccccchhh--hhhhhhH---HH Confidence 0111110111 12444443 45566666877777 5677889999876 5 2233431 1112222 12 Q ss_pred HHHHhhh--hhHHHHH--------HHHHHHH---Hh-----cCCC--CC--ceeEEeccccccchhHHHHHHHHHHHhhh Q lcl|Aclame:pro 424 RAYQRNA--LQQLMND--------VIVMIQL---SL-----FGAV--DP--SIKWQWNALRELDDLEVAESRYKQAQSDV 481 (695) Q Consensus 424 ~~~Qe~~--l~p~l~~--------l~~~l~~---s~-----~g~~--~~--d~~~~f~pL~~~se~e~Aei~~~~a~~~~ 481 (695) ++.||.. +.-.|.+ +++.+.+ .. +|.. |. .+++.|.|+.-.+..+. .+-.. T Consensus 396 a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~ivf~p~~P~d~~~v-------v~~~~ 468 (563) T protein:vir:74 396 AANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCIFADPMPVNKTQV-------TQDTL 468 (563) T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEEeCCCCCccHHHH-------HHHHH Confidence 2222222 2222222 1111111 11 2211 11 25677999876665443 34455 Q ss_pred hhhhhhcchhhhhhhhhhhhhhhhhhhh-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhcccccccccCCCccchhhh Q lcl|Aclame:pro 482 LYVQEQVIRPDQVAARLNTEPDGPYAGK-----LDANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTV 556 (695) Q Consensus 482 ~~~~~g~i~~~e~r~~L~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (695) .+.++|+++...+...|....-..-.-. .....+..+.. .+............................. T Consensus 469 tl~~aGiiSretAv~~L~~~g~~~pdae~e~~~ie~~~i~~~~~-a~a~ad~~~~~~a~~~~g~~~~~~dd~g~p~---- 543 (563) T protein:vir:74 469 LLQQAHLILRKMAVAKLRSIGWEYPEVDDQGNALTDDDIADMLL-AEAEADASLGLSAMDNGGAGEQQFDDQGNPI---- 543 (563) T ss_pred HHHHcCchhHHHHHHHHHhCCCCCCcHHHHHhhcCHHHHHHHHH-HHhhccCcccceecccCCCCcccccccCCch---- Confidence 6788899999888887765421111100 00011100000 0000000000000000000000000000000 Q ss_pred hhhhhccccccccccCceEEEEEEEEEc Q lcl|Aclame:pro 557 ANVNANVKPREAGAQDAAMRAAGAVYVV 584 (695) Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 584 (695) .........++-+. -+-+.. T Consensus 544 ------~~~~~~~~~~~~~~--~~~~~~ 563 (563) T protein:vir:74 544 ------DQFGNPVEIPPDVT--QVPLSP 563 (563) T ss_pred ------hHcCCcccCCcccc--ccCCCC Confidence 00000000000000 000000 No 228 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=30.80 E-value=1.5 Score=19.54 Aligned_cols=457 Identities=11% Similarity=-0.018 Sum_probs=159.5 Q ss_pred HHHHHHhcCCCCcccchhhccccccccccccccc-chhhhhhhcccccCCCCcccccccccccc-cccccch-hhhhhhc Q lcl|Aclame:pro 30 AATIATATAAQPVPADMGRRGALNALDAAPVAEP-SPSLRLARQFEVDVSNYTPRERRAASYAL-DFNGTSM-DALSFVT 106 (695) Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 106 (695) .-.|.+..|.|+.+.. ...+ .+++.... .... .+.. ..|+... ..+.-.. T Consensus 1 ~~~~~d~~g~p~~~~~--------------~~~~~~~~~~~~~-----------~~~~--~~~~~gltp~~l~~il~~a~ 53 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQ--------------LREPQTSRLAGLA-----------KEFA--QHPAKGLTPAKLARILVEAE 53 (526) T ss_pred CCeeeCCCCCccCccc--------------cchhhhhhhhhhh-----------hhcc--cCCCCCcCHHHHHHHHHHhh Confidence 1122222222221110 0000 01110000 0000 0000 0111111 1111111 Q ss_pred cCCCCchHHHH-HH-HhChhhhhHhhcchHHHhhCCceeeccchhhhhccCccccccc-cccCCHHHHHHHHHHHHhh-c Q lcl|Aclame:pro 107 SSGFPGFPTLV-LL-AQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNA-ASTSDGDQLKQINDEIERL-R 182 (695) Q Consensus 107 ~~~f~gy~~~a-~~-~~~~~~r~~v~~~a~d~tR~~~~i~~~~~~d~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~l-~ 182 (695) ...+..|..|. .+ ....-+..+++.--.-.+. ..|.|.... .+..+.+..+.+++.+.++ + T Consensus 54 ~gd~~~~~~L~edm~e~D~~i~s~l~~Rk~av~~---------------~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~ 118 (526) T protein:vir:79 54 QGNLQAQAELFMDMEERDAHLFAEMSKRKRAILG---------------LDWAVEPPRNASAAEKADADYLHELLLDLEG 118 (526) T ss_pred CCCHHHHHHHHHHHHhhChHHHHHHHHHHHHHhC---------------CCceEecCCCCChHHHHHHHHHHHHHhcccC Confidence 11222111111 00 1222222222222111111 122222211 1122334555677777776 4 Q ss_pred hHHHHHHHHHhcCccceEEEEEEEcCCCchhccccCCccccccCcceEEEEEecchhccccceecccccccccCCceeEE Q lcl|Aclame:pro 183 IRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWW 262 (695) Q Consensus 183 ~~~~~~~a~~~~Rl~G~~~i~i~~~~d~~~~~~Pl~~~~~~i~~g~l~~l~v~d~~~i~p~~~~~~dp~s~~yg~P~~y~ 262 (695) +.+.+.+++. +.+||.++.=|.-+.++.. -.++.|...++.|+.- |+.......-..-. T Consensus 119 ~~~~i~~~ld-A~~~G~s~~Ei~w~~~~g~--------------~~~~~l~~r~~~~F~~------~~~~~~~l~~~~~~ 177 (526) T protein:vir:79 119 LEDLLLDALD-GIGHGYSCIELEWALQGRE--------------WMPLAFHHRPQSWFQL------NPEDQNELRLRDNS 177 (526) T ss_pred HHHHHHHHHh-hhhhcceeEEEEEeecCCc--------------eeEEEeeeecccceEe------ccCCCcEEEecCCC Confidence 6666666666 8899999988765433221 1233455555544431 11110000000001 Q ss_pred EcceEEchhhEEEecCCcchhhhhcccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHhccc--eeeechHHhhcchHHH Q lcl|Aclame:pro 263 MIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVS--GILMDLAQALMPGANV 340 (695) Q Consensus 263 i~~~~iH~SRli~~~~~~~p~~~~~~~~~~G~S~l~~~~~~l~~~~~~~~~~~~l~~~~~~~--v~k~~~~~~l~~~~~~ 340 (695) ..|..+.+-+.+.+.... ...+.+|.+++..||-...--..+..--+..+.++++. +.|.+-. + .++ T Consensus 178 ~~g~~l~~~k~iv~~~~~------~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~~igky~~~---a--~~~ 246 (526) T protein:vir:79 178 PAGEALQPFGWIIHRPRA------RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPG---T--ADE 246 (526) T ss_pred CCceeecCCceEEEeecC------CcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEEecCCC---C--CHH Confidence 234556666666555432 23456799999998777654444555556777887754 4454311 1 122 Q ss_pred HHHHHHHHHHHhcCCceeEEEEcCCceeEEEecccCCh---HHHHHHHHHHHHhh-hcCCceeeeccCcccccCcchHHH Q lcl|Aclame:pro 341 DLSMRAELINRYRDNRNILFLDKATEEFFQFNTPLSGL---DALQAQAQEQMSAV-SHIPLIKLLGITPTGLNASSEGEI 416 (695) Q Consensus 341 ~l~~r~~~~~~~~~n~~~~~ld~~~e~~~~~~~~lsgl---~~~~~~~~~~iaaa-s~iP~t~L~G~sp~Glnatge~D~ 416 (695) +...-++.+..+.+ .+..++- .+.+++.++.+=++. ..+++..-++||-+ .|--+|--.|..-+|-+|-|+.-. T Consensus 247 ek~~L~~av~~i~~-da~~iiP-~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g~vh~ 324 (526) T protein:vir:79 247 EKATLLRAVTGLGH-AAAGIIP-ETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHN 324 (526) T ss_pred HHHHHHHHHHHHhc-CcEEEec-CCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhhHHHHH Confidence 33444565666654 4555665 468899998764443 23334344445432 121122111111112233344334 Q ss_pred HHHHHHHHHHHhhhhhHHHH-HHHHHHHHHhcCCC-CCc--eeEEeccccccchhHHHHHHHHHHHhhhhhhhhhc-chh Q lcl|Aclame:pro 417 RVWYDYVRAYQRNALQQLMN-DVIVMIQLSLFGAV-DPS--IKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQV-IRP 491 (695) Q Consensus 417 ~nyyd~i~~~Qe~~l~p~l~-~l~~~l~~s~~g~~-~~d--~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g~-i~~ 491 (695) ....+.+.+.... +...|+ .++.-++.--|+.. +.. -.++|......+-+.+++...+. ...|. ++. T Consensus 325 ~v~~di~~aDa~~-i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L-------~~~G~~i~~ 396 (526) T protein:vir:79 325 EVRHDILASDARQ-LAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPAL-------VNVGLEIPS 396 (526) T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHHHHH-------HhCCCcCCH Confidence 5555555554433 445554 46666665555533 211 24555554444444454444433 33332 222 Q ss_pred hhhhhhhhhhh----------------------------------hhhhhhhh---hhhh-----hhhhhhhhhhh---- Q lcl|Aclame:pro 492 DQVAARLNTEP----------------------------------DGPYAGKL---DAND-----DPGVPADDDID---- 525 (695) Q Consensus 492 ~e~r~~L~~~~----------------------------------~~~~~~~~---~~~~-----~~~~~~~~~~~---- 525 (695) ..+++.+.... ........ ..+. ........... T Consensus 397 ~~i~e~~gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~i~~~~ 476 (526) T protein:vir:79 397 AWVYDKLGIPQPAKNEPVLRPAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALADLPAKDMQNQANDLLAPLLDAV 476 (526) T ss_pred HHHHHHhCCCCCCCchhhccccCCccccccccccccccccccccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22222211100 00000000 0000 00000000000 Q ss_pred hhhhhhhhhhhhc--ccccccccCCCccchhh---hhhhhhcccccccccc Q lcl|Aclame:pro 526 GVLTYVQRLAEGG--DTGAPGGARAGATAPPT---VANVNANVKPREAGAQ 571 (695) Q Consensus 526 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 571 (695) ............. .+...... ........ ................ T Consensus 477 ~~~~s~ee~~~~L~~l~~~ld~~-~l~~~l~~a~~~A~l~Gr~~~~~e~~~ 526 (526) T protein:vir:79 477 NRGDSETELLGALAEAFPDMDDS-ALTDALHRLLFAADTWGRLHGNLDRID 526 (526) T ss_pred HhcCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHHHHhhhhhhhhcccC Confidence 0000000000000 00000000 00000000 0000000000000000 No 229 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=28.45 E-value=1.7 Score=19.25 Aligned_cols=247 Identities=13% Similarity=0.039 Sum_probs=97.0 Q ss_pred ccccCCccccccCcceEEEEEecchhcc--------ccceecccccccccCCce-eEEEcceEE----------chhhEE Q lcl|Aclame:pro 214 DTPLVPRPYTVPKGSFQGLRVVEPYWVT--------PNNYNSINPVADDFYKPS-TWWMIGTEV----------HATRLH 274 (695) Q Consensus 214 ~~Pl~~~~~~i~~g~l~~l~v~d~~~i~--------p~~~~~~dp~s~~yg~P~-~y~i~~~~i----------H~SRli 274 (695) -.-++++ .+....++.-|+|-||.--- .+.++..|-....-.+-. +|-++|+.| -..||- T Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (279) T protein:vir:40 1 MSLFNLS-RRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFYWALQGKEVYRVWYGGFKYYAQRVN 79 (279) T ss_pred Ccccccc-hhhcccceeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhccceeehhhhhhHHHHHhhcC Confidence 0001111 12233455566666653100 111222221111001111 233444332 122221 Q ss_pred --EecCC-cchhhhhcccCCCCchHHHHHHHHHHH------HHHHhHHHHHHHH-Hhcc-ceeeechHHhhcchHHHHHH Q lcl|Aclame:pro 275 --TIVSR-PVGDMLKPTYSFAGISMTQLAMPYIDN------WLRTRQSVSDIVK-QFSV-SGILMDLAQALMPGANVDLS 343 (695) Q Consensus 275 --~~~~~-~~p~~~~~~~~~~G~S~l~~~~~~l~~------~~~~~~~~~~l~~-~~~~-~v~k~~~~~~l~~~~~~~l~ 343 (695) -|+.. +-|...-..-.+.-.++++..+-.+.. ++-...+++.=+. ..++ .++|++....+..-. ++.+ T Consensus 80 ~d~fn~~vr~~~~~~vtVP~~Dv~IieNPlv~v~~ee~~kM~~la~nai~~KLD~~~qIk~fIKTd~d~glee~k-ekaR 158 (279) T protein:vir:40 80 ADQFNIVVREPNRREVTIRTNDYEMLLNPFYGANPQRFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSSGLKEVW-DRIR 158 (279) T ss_pred cchhhhheecCCcceeEeecchhhhhhcchheeccchhhHHHHHHHhhhhhhhcccceeeeEEecCcchhHHHHH-HHHH Confidence 00000 000000011112233444333211110 0111111111111 1122 234555332222111 2334 Q ss_pred HHHHHHH-HhcCCceeEEEEcCCceeEEEecccCC-hHHHHHHHHHHHHhhhcCCceeeeccCcccccCcchHHHHHHHH Q lcl|Aclame:pro 344 MRAELIN-RYRDNRNILFLDKATEEFFQFNTPLSG-LDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYD 421 (695) Q Consensus 344 ~r~~~~~-~~~~n~~~~~ld~~~e~~~~~~~~lsg-l~~~~~~~~~~iaaas~iP~t~L~G~sp~Glnatge~D~~nyyd 421 (695) .|++.+- ..+.-+|...+|. +|++.+++-+.|+ +.+=++.....+....+||-.+|.|++ .|+.+.+||. T Consensus 159 ~rIk~mlalAk~~nGityid~-~ddItQL~kDYStslk~die~lkS~l~Sq~GinekIL~GsA-------tE~q~iAyy~ 230 (279) T protein:vir:40 159 ERLTQQQQLAREFNGVSVIGS-DDDIKQIQPDYSGSLQNDANLAIEIALSEYGMPRELLYGQS-------NEVTIIAFAI 230 (279) T ss_pred HHHHHHHHHHHhcCCeeeecC-CceeEeeccccccccHHHHHHHHHHHHhhcCCchhhccccC-------chhhhhhHHH Confidence 4444333 3343468888985 8999999988875 667778888889999999999999953 3667888886 Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhcCCCCCceeEEeccccccchhHHHHHHHHHHHhhhhhhhhh Q lcl|Aclame:pro 422 YVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQ 487 (695) Q Consensus 422 ~i~~~Qe~~l~p~l~~l~~~l~~s~~g~~~~d~~~~f~pL~~~se~e~Aei~~~~a~~~~~~~~~g 487 (695) + .+.|.|+.+.+-|..+ +++.+.| ...|.+-- .+..+....++.-+.+. T Consensus 231 r-------tVePILkQyek~liY~------~E~fv~y---~ttta~gg-~~~s~~~~~~~~~~~~~ 279 (279) T protein:vir:40 231 Q-------KVLPLLKQHDKNIIFN------QENFVAY---ISTTAKGG-AIESKSSKRDSEPVGND 279 (279) T ss_pred h-------hHHHHHHHhcccccch------hhhhhhh---heecccCc-ccccccccccCCCCCCC Confidence 4 3566666644422221 1111111 11111000 00111111111111110 Done!