BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:79177|NCBI_annot:gp4, phage terminase, ATPase subunit|genbank:acc:YP_001111035;genbank:gi:134288784;genbank:G eneID:4960696 (589 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 1223 0.0 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 1210 0.0 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 1209 0.0 gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: pre... 789 0.0 gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: te... 786 0.0 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 694 0.0 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 684 0.0 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 682 0.0 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 682 0.0 gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: te... 647 0.0 gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: puta... 485 e-139 gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 432 e-123 gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: ter... 421 e-120 gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf... 419 e-119 gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hyp... 419 e-119 gi|13742|lcl|protein:vir:1826 Length: 248 # NCBI annotation: W p... 133 5e-33 gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: lar... 44 4e-06 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 39 2e-04 gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: P... 34 0.005 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 33 0.012 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 33 0.013 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 32 0.020 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 30 0.054 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 30 0.057 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 30 0.060 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 30 0.069 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 30 0.076 gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: Te... 28 0.44 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 25 1.7 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 25 2.0 gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: pu... 25 2.4 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 25 3.1 gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 24 4.4 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 24 4.4 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 24 4.4 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 24 4.4 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 24 4.4 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 24 4.4 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 24 5.2 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 24 5.3 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 24 5.5 gi|13914|lcl|protein:vir:9881 Length: 168 # NCBI annotation: hyp... 24 6.1 gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: put... 23 6.9 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 23 8.2 gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: p... 23 9.8 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 1223 bits (3165), Expect = 0.0, Method: Compositional matrix adjust. Identities = 589/589 (100%), Positives = 589/589 (100%) Query: 1 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI 60 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI Sbjct: 1 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI 60 Query: 61 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG 120 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG Sbjct: 61 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG 120 Query: 121 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREA 180 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREA Sbjct: 121 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREA 180 Query: 181 LVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNA 240 LVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNA Sbjct: 181 LVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNA 240 Query: 241 RTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAH 300 RTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAH Sbjct: 241 RTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAH 300 Query: 301 ANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAE 360 ANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAE Sbjct: 301 ANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAE 360 Query: 361 EFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALT 420 EFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALT Sbjct: 361 EFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALT 420 Query: 421 GDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQ 480 GDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQ Sbjct: 421 GDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQ 480 Query: 481 GVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMT 540 GVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMT Sbjct: 481 GVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMT 540 Query: 541 ASGRQATYTAGRTEETGHADLAWACLHAIDREPLAGGGIHSSSFTEFYA 589 ASGRQATYTAGRTEETGHADLAWACLHAIDREPLAGGGIHSSSFTEFYA Sbjct: 541 ASGRQATYTAGRTEETGHADLAWACLHAIDREPLAGGGIHSSSFTEFYA 589 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 1210 bits (3130), Expect = 0.0, Method: Compositional matrix adjust. Identities = 582/589 (98%), Positives = 587/589 (99%) Query: 1 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI 60 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI Sbjct: 13 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI 72 Query: 61 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG 120 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG Sbjct: 73 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG 132 Query: 121 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREA 180 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREA Sbjct: 133 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREA 192 Query: 181 LVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNA 240 LVDALDTDRNQIFLSASKAQAHVFKQYITQFAR AAD+ELTGDPIILPSGATLYFLGTNA Sbjct: 193 LVDALDTDRNQIFLSASKAQAHVFKQYITQFARGAADIELTGDPIILPSGATLYFLGTNA 252 Query: 241 RTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAH 300 RTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEA+AFWSGAH Sbjct: 253 RTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFWSGAH 312 Query: 301 ANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAE 360 ANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGC+LFDIDELRREYSAE Sbjct: 313 ANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCDLFDIDELRREYSAE 372 Query: 361 EFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALT 420 EFANLLMC FIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFG+REVWVGYDPALT Sbjct: 373 EFANLLMCQFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALT 432 Query: 421 GDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQ 480 GDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQ Sbjct: 433 GDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQ 492 Query: 481 GVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMT 540 GVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMT Sbjct: 493 GVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMT 552 Query: 541 ASGRQATYTAGRTEETGHADLAWACLHAIDREPLAGGGIHSSSFTEFYA 589 ASGRQATYTAGRT+ETGHADLAWACLHAIDREPLAGGGIHSSSFTEFYA Sbjct: 553 ASGRQATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFYA 601 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 1209 bits (3127), Expect = 0.0, Method: Compositional matrix adjust. Identities = 581/589 (98%), Positives = 587/589 (99%) Query: 1 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI 60 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI Sbjct: 13 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI 72 Query: 61 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG 120 EASLEVR+MVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG Sbjct: 73 EASLEVRLMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG 132 Query: 121 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREA 180 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREA Sbjct: 133 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREA 192 Query: 181 LVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNA 240 LVDALDTDRNQIFLSASKAQAHVFKQYITQFAR AAD+ELTGDPIILPSGATLYFLGTNA Sbjct: 193 LVDALDTDRNQIFLSASKAQAHVFKQYITQFARAAADIELTGDPIILPSGATLYFLGTNA 252 Query: 241 RTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAH 300 RTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEA+AFWSGAH Sbjct: 253 RTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAYAFWSGAH 312 Query: 301 ANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAE 360 ANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGC+LFDIDELRREYSAE Sbjct: 313 ANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCDLFDIDELRREYSAE 372 Query: 361 EFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALT 420 EFANLLMC FIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFG+REVWVGYDPALT Sbjct: 373 EFANLLMCQFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGYREVWVGYDPALT 432 Query: 421 GDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQ 480 GDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQ Sbjct: 433 GDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQ 492 Query: 481 GVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMT 540 GVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMT Sbjct: 493 GVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMT 552 Query: 541 ASGRQATYTAGRTEETGHADLAWACLHAIDREPLAGGGIHSSSFTEFYA 589 ASGRQATYTAGRT+ETGHADLAWACLHAIDREPLAGGGIHSSSFTEFYA Sbjct: 553 ASGRQATYTAGRTDETGHADLAWACLHAIDREPLAGGGIHSSSFTEFYA 601 >gi|15673|lcl|protein:vir:1151 Length: 594 # NCBI annotation: predicted DNA-dependent ATPase terminase subunit # Family: family:all:169 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490600;genbank:gi:17313220;genbank:GeneID :927317 Length = 594 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/564 (66%), Positives = 444/564 (78%) Query: 13 DVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERIEASLEVRMMVLI 72 D R+ A+ LYW GWR+ IA HL K T+ SW R+ W A VERI +LE R++ LI Sbjct: 18 DNRRQAKFLYWMGWRVCDIADHLGEKDKTLHSWKDRDGWDRADSVERIGGALEARLVQLI 77 Query: 73 AKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAGPKRRAPRNEISD 132 K+ K G DYKEIDLL RQ+ER AR+++Y G E+DLNP++A RN GPKR+ RN+IS+ Sbjct: 78 LKDGKTGGDYKEIDLLHRQLERQARIQRYQGGGTETDLNPELAKRNEGPKRKPKRNDISE 137 Query: 133 EQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFAREALVDALDTDRNQI 192 E ++++EAF D FDYQK WYR G+QRTR ILKSRQIGAT+YFAREAL+DAL+T RNQI Sbjct: 138 ELTEKLVEAFLDGCFDYQKDWYRAGNQRTRVILKSRQIGATFYFAREALIDALETGRNQI 197 Query: 193 FLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNARTAQSYHGNFYF 252 FLSASKAQAH+FK YI FARDA VEL GDPIILP+GA L+FLGTNARTAQ YHGNFYF Sbjct: 198 FLSASKAQAHIFKAYIQAFARDAVGVELKGDPIILPNGAELHFLGTNARTAQGYHGNFYF 257 Query: 253 DEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAHANRGRAAGERIQ 312 DE+FW KF+ELNKVASGMAM KR+R+TYFSTPSS+ HEA+ FW+G N+G+ A +RI+ Sbjct: 258 DEFFWTFKFKELNKVASGMAMQKRYRRTYFSTPSSMAHEAYTFWTGERFNKGKPAADRIK 317 Query: 313 IDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAEEFANLLMCHFID 372 ID SH+AL +G LCED WRQIVT+LDA A GC+LFDIDELR EY AE F NLLMC F+D Sbjct: 318 IDVSHDALQQGRLCEDRIWRQIVTILDAEARGCDLFDIDELRLEYDAEAFQNLLMCQFVD 377 Query: 373 DSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAPP 432 D S+F L+ LQ CMVDSW+ W++D+ P LRPFG R+VW+GYDPA TGD+AGLVVVAPP Sbjct: 378 DGASIFPLTMLQPCMVDSWDLWSEDYKPFALRPFGDRQVWLGYDPAETGDTAGLVVVAPP 437 Query: 433 RVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPA 492 V G FRVLERHQFRG DF EQA I +TQRY V YI +DTTGMG GV QLVR+FFP Sbjct: 438 AVPGGKFRVLERHQFRGKDFAEQAEFIRKVTQRYWVTYIGVDTTGMGSGVAQLVRQFFPG 497 Query: 493 AVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGRQATYTAGR 552 +YSPEVKT+LV+K SV++NGRL+FDAGWTDLA A MAI++T+TA GRQ TYTAGR Sbjct: 498 VRTFSYSPEVKTQLVMKAWSVIKNGRLEFDAGWTDLAQALMAIRKTITAGGRQFTYTAGR 557 Query: 553 TEETGHADLAWACLHAIDREPLAG 576 + TGHADLAWA HA+ EPL G Sbjct: 558 NDNTGHADLAWALFHALQNEPLEG 581 >gi|11877|lcl|protein:vir:79128 Length: 593 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165255;genbank:gi:145708080;genbank:Ge neID:5247139 Length = 593 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/579 (65%), Positives = 454/579 (78%), Gaps = 3/579 (0%) Query: 11 ENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERIEASLEVRMMV 70 E D R++A TLYWQG+ +A IA L +KP TV SW RR+ W A VER+ S+E RM Sbjct: 15 EKDPRRIAGTLYWQGYWVARIAEMLGVKPVTVHSWKRRDGWDAADAVERVANSIEERMAQ 74 Query: 71 LIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAGPKRRAPRNEI 130 L+AKE K+G DYKEIDLLGRQ+ER+ARVR+Y+ +G E+DLNPK+A+RN GP+ + RN I Sbjct: 75 LVAKEVKEGRDYKEIDLLGRQMERMARVRRYEASGNETDLNPKVANRNKGPRSKPERNAI 134 Query: 131 SDEQHKRIIEAFRDSLFDYQKVWYRNGD-QRTRNILKSRQIGATWYFAREALVDALDTDR 189 S E+ +++EAFRDS+FDYQ+VWY G +R RN+LKSRQIGATWYFAREA +DAL T R Sbjct: 135 SPEEQTQLLEAFRDSMFDYQRVWYEAGQVERIRNLLKSRQIGATWYFAREAFIDALTTGR 194 Query: 190 NQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNARTAQSYHGN 249 NQIFLSASKAQAHVFKQYI QFA+DAA +EL GDP++LP+GATLYFLGTNARTAQSYHGN Sbjct: 195 NQIFLSASKAQAHVFKQYIIQFAKDAAGIELKGDPMVLPNGATLYFLGTNARTAQSYHGN 254 Query: 250 FYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAHANRGRAAGE 309 YFDEYFWVP+F+EL KVASGMA+HK WR+TYFSTPSS++HEA+ FWSGA NRG+A + Sbjct: 255 LYFDEYFWVPRFQELRKVASGMAIHKHWRQTYFSTPSSLSHEAYPFWSGALFNRGKAKDK 314 Query: 310 RIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAEEFANLLMCH 369 +I++D SH AL GM C D QWRQIVTV DA+ GGCNLFD+D+LR EYS +FANLLMC Sbjct: 315 QIKLDLSHAALRDGMRCADGQWRQIVTVEDALRGGCNLFDLDQLRLEYSELDFANLLMCV 374 Query: 370 FIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDP-ALTGDSAGLVV 428 FIDD+ SVF L+ L R MVDSWE W +DF P RPFG+R VWVGYDP GDSA LVV Sbjct: 375 FIDDNASVFPLAMLMRGMVDSWEVW-EDFRPFAPRPFGNRPVWVGYDPNGGGGDSAALVV 433 Query: 429 VAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRK 488 VAPP V G FRVLERHQFRG D+EEQA AI + +RY+V Y+ ID TG+G V++LV+K Sbjct: 434 VAPPLVPGGKFRVLERHQFRGIDYEEQAGAIRRVAERYDVAYVGIDRTGIGDAVFRLVQK 493 Query: 489 FFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGRQATY 548 F P A YS +VKT LVLK V+ GRL+FDAGWTD AA+FM+IK+T TA+G + TY Sbjct: 494 FRPDAEGFTYSVDVKTALVLKAHDVISKGRLEFDAGWTDFAASFMSIKKTTTAAGGRVTY 553 Query: 549 TAGRTEETGHADLAWACLHAIDREPLAGGGIHSSSFTEF 587 AGR+E+T HADLAWAC+HA+ EPL G ++S E Sbjct: 554 QAGRSEDTSHADLAWACMHALSHEPLEGVTTTNTSILEI 592 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/582 (57%), Positives = 426/582 (73%), Gaps = 6/582 (1%) Query: 10 LENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERIEASLEVRMM 69 L +D R+ A LYWQG+ + IA L +K TV SW +R+ W P+ R+E+SLE R++ Sbjct: 9 LLHDPRRQASLLYWQGFSVPQIAEMLQVKRPTVQSWKQRDGWDGIAPISRVESSLEARLI 68 Query: 70 VLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAGPKRRAPRNE 129 LIAK +K G D+KEIDLLGRQ+ERLARV +Y +TG E+DLNP +A+RN G ++R +N Sbjct: 69 QLIAKPQKSGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVANRNKGERKRPKKNF 128 Query: 130 ISDEQHKRIIEAFRDSLFDYQKVWYRNG-DQRTRNILKSRQIGATWYFAREALVDALDTD 188 SDE ++ E F D F+YQ WYR G R R+ILKSRQIGAT+YF+REAL+ AL T Sbjct: 129 FSDEAVAKLEEIFFDQSFEYQLQWYRAGLAHRIRDILKSRQIGATFYFSREALLRALKTG 188 Query: 189 RNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIIL-PSGATLYFLGTNARTAQSYH 247 NQIFLSASK QA+VF++YI QFAR DV+LTGDPI++ +GA L FLGTN+ TAQS++ Sbjct: 189 HNQIFLSASKTQAYVFREYIIQFAR-LVDVDLTGDPIVIGNNGAKLIFLGTNSNTAQSHN 247 Query: 248 GNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAHANRGRA- 306 G+ Y DE FW+P F++L KVASGMA K R TYFSTPS++ H A+ FWSG N+GRA Sbjct: 248 GDLYVDEIFWIPNFQKLRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNKGRAS 307 Query: 307 AGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAEEFANLL 366 A +RI+ID SH AL G+LC D QWRQIVT+ DA+AGGC LFD+D+LRRE S E+F NL Sbjct: 308 AADRIEIDISHSALAGGLLCADGQWRQIVTIEDALAGGCTLFDLDQLRRENSDEDFKNLF 367 Query: 367 MCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGL 426 MC F+DD SVF +LQRCMVD E W +DF+P PFG R VW+GYDP+ TGDSAG Sbjct: 368 MCEFVDDKASVFPFEELQRCMVDVMETW-EDFAPFADHPFGSRPVWIGYDPSHTGDSAGC 426 Query: 427 VVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLV 486 VV+APP V G FR+LERHQ++G DF QA I +T++YNV YI ID TG+G GV+QLV Sbjct: 427 VVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIRRLTEKYNVEYIGIDATGLGLGVFQLV 486 Query: 487 RKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQTMTASGRQA 546 R F+PAA + Y+PE+KT +VLK + +R G L++DAG TD+ +FM+I++TMT+SGR A Sbjct: 487 RSFYPAARGIRYTPEMKTAMVLKAKDTIRRGCLEYDAGATDVTQSFMSIRKTMTSSGRSA 546 Query: 547 TYTAGRTEETGHADLAWACLHAIDREPL-AGGGIHSSSFTEF 587 TY A RTEE HAD+AWA +HA+ EPL AG G+ S EF Sbjct: 547 TYEASRTEEASHADIAWATMHALLNEPLSAGSGMQPKSILEF 588 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/593 (56%), Positives = 429/593 (72%), Gaps = 8/593 (1%) Query: 1 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI 60 M TTD L +D R+ A LYWQG+ + IA L +K TV SW +R+ W P+ R+ Sbjct: 1 MTITTDT-TLLHDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSWKQRDGWDSVAPISRV 59 Query: 61 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG 120 E SLE R+ LI K +K G D+KEIDLLGRQ+ERLARV +Y +TG E+DLNP +A+RN G Sbjct: 60 EMSLEARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVANRNKG 119 Query: 121 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNG-DQRTRNILKSRQIGATWYFARE 179 +R+ +N SDE +++ + F + FDYQ WYR G + R R+ILKSRQIGAT+YF+RE Sbjct: 120 GRRKPKKNFFSDEAIEKLEQIFFEQSFDYQLHWYRAGLEHRIRDILKSRQIGATFYFSRE 179 Query: 180 ALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIIL-PSGATLYFLGT 238 AL+ AL T NQIFLSASK QA+VF++YI FAR DV+LTGDPI+L +GA L FLGT Sbjct: 180 ALLRALKTGHNQIFLSASKTQAYVFREYIIAFAR-LVDVDLTGDPIVLGNNGAKLIFLGT 238 Query: 239 NARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSG 298 N+ TAQS++G+ Y DE FW+P F+ L KVASGMA R TYFSTPS++ H+A+ FWSG Sbjct: 239 NSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSG 298 Query: 299 AHANRGRA-AGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREY 357 NRGRA A ER++ID SH AL G+LC D QWRQIVT+ DA+ GGC LFDI++L+RE Sbjct: 299 ELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIEDALKGGCTLFDIEQLKREN 358 Query: 358 SAEEFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDP 417 SA++F NL MC F+DD SVF +LQRCMVD+ EEW +D++P PFG R VW+GYDP Sbjct: 359 SADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEW-EDYAPFAANPFGSRPVWIGYDP 417 Query: 418 ALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTG 477 + GDSAG VV+APP V G FR+LERHQ++G DF QA +I +T++YNV YI ID TG Sbjct: 418 SHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATG 477 Query: 478 MGQGVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQ 537 +G GV+QLVR F+PAA + Y+PE+KT +VLK + V+R G L++D TD+ ++FMAI++ Sbjct: 478 LGVGVFQLVRSFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRK 537 Query: 538 TMTASGRQATYTAGRTEETGHADLAWACLHAIDREPLAGG--GIHSSSFTEFY 588 TMT+SGR ATY A R+EE HADLAWA +HA+ EPL G +S+ EFY Sbjct: 538 TMTSSGRSATYEASRSEEASHADLAWATMHALLNEPLTAGISTPLTSTILEFY 590 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/593 (56%), Positives = 429/593 (72%), Gaps = 8/593 (1%) Query: 1 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI 60 M TTD L +D R+ A LYWQG+ + IA L +K TV SW +R+ W P+ R+ Sbjct: 1 MTITTDTTLL-HDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSWKQRDGWDSVAPISRV 59 Query: 61 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG 120 E SLE R+ LI K +K G D+KEIDLLGRQ+ERLARV +Y +TG E+DLNP +A+RN G Sbjct: 60 EMSLEARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVANRNKG 119 Query: 121 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNG-DQRTRNILKSRQIGATWYFARE 179 +R+ +N SDE +++ + F + F+YQ WYR G + R R+ILKSRQIGAT+YF+RE Sbjct: 120 GRRKPKKNFFSDEAIEKLEQIFFEQSFEYQLHWYRAGLEHRIRDILKSRQIGATFYFSRE 179 Query: 180 ALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIIL-PSGATLYFLGT 238 AL+ AL T NQIFLSASK QA+VF++YI FAR DV+LTGDPI+L +GA L FLGT Sbjct: 180 ALLRALKTGHNQIFLSASKTQAYVFREYIIAFAR-LVDVDLTGDPIVLGNNGAKLIFLGT 238 Query: 239 NARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSG 298 N+ TAQS++G+ Y DE FW+P F+ L KVASGMA R TYFSTPS++ H+A+ FWSG Sbjct: 239 NSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSG 298 Query: 299 AHANRGRA-AGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREY 357 NRGRA A ER++ID SH AL G+LC D QWRQIVT+ DA+ GGC LFDI++L+RE Sbjct: 299 ELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIEDALKGGCTLFDIEQLKREN 358 Query: 358 SAEEFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDP 417 SA++F NL MC F+DD SVF +LQRCMVD+ EEW +D++P PFG R VW+GYDP Sbjct: 359 SADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEW-EDYAPFAANPFGSRPVWIGYDP 417 Query: 418 ALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTG 477 + GDSAG VV+APP V G FR+LERHQ++G DF QA +I +T++YNV YI ID TG Sbjct: 418 SHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATG 477 Query: 478 MGQGVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQ 537 +G GV+QLVR F+PAA + Y+PE+KT +VLK + V+R G L++D TD+ ++FMAI++ Sbjct: 478 LGVGVFQLVRSFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRK 537 Query: 538 TMTASGRQATYTAGRTEETGHADLAWACLHAIDREPLAGG--GIHSSSFTEFY 588 TMT+SGR ATY A R+EE HADLAWA +HA+ EPL G +S+ EFY Sbjct: 538 TMTSSGRSATYEASRSEEASHADLAWATMHALLNEPLTAGISTPLTSTILEFY 590 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/593 (56%), Positives = 429/593 (72%), Gaps = 8/593 (1%) Query: 1 MLETTDPHQLENDVRKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERI 60 M TTD L +D R+ A LYWQG+ + IA L +K TV SW +R+ W P+ R+ Sbjct: 1 MTITTDTTLL-HDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSWKQRDGWDSVAPISRV 59 Query: 61 EASLEVRMMVLIAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLNPKIASRNAG 120 E SLE R+ LI K +K G D+KEIDLLGRQ+ERLARV +Y +TG E+DLNP +A+RN G Sbjct: 60 EMSLEARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQTGNEADLNPNVANRNKG 119 Query: 121 PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNG-DQRTRNILKSRQIGATWYFARE 179 +R+ +N SDE +++ + F + F+YQ WYR G + R R+ILKSRQIGAT+YF+RE Sbjct: 120 GRRKPKKNFFSDEAIEKLEQIFFEQSFEYQLHWYRAGLEHRIRDILKSRQIGATFYFSRE 179 Query: 180 ALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIIL-PSGATLYFLGT 238 AL+ AL T NQIFLSASK QA+VF++YI FAR DV+LTGDPI+L +GA L FLGT Sbjct: 180 ALLRALKTGHNQIFLSASKTQAYVFREYIIAFAR-LVDVDLTGDPIVLGNNGAKLIFLGT 238 Query: 239 NARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSG 298 N+ TAQS++G+ Y DE FW+P F+ L KVASGMA R TYFSTPS++ H+A+ FWSG Sbjct: 239 NSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSG 298 Query: 299 AHANRGRA-AGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREY 357 NRGRA A ER++ID SH AL G+LC D QWRQIVT+ DA+ GGC LFDI++L+RE Sbjct: 299 ELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQIVTIEDALKGGCTLFDIEQLKREN 358 Query: 358 SAEEFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDP 417 SA++F NL MC F+DD SVF +LQRCMVD+ EEW +D++P PFG R VW+GYDP Sbjct: 359 SADDFKNLFMCEFVDDKASVFPFEELQRCMVDTLEEW-EDYAPFAANPFGSRPVWIGYDP 417 Query: 418 ALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTG 477 + GDSAG VV+APP V G FR+LERHQ++G DF QA +I +T++YNV YI ID TG Sbjct: 418 SHRGDSAGCVVLAPPVVAGGKFRILERHQWKGMDFATQAESIRKLTEKYNVEYIGIDATG 477 Query: 478 MGQGVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFMAIKQ 537 +G GV+QLVR F+PAA + Y+PE+KT +VLK + V+R G L++D TD+ ++FMAI++ Sbjct: 478 LGVGVFQLVRSFYPAARDIRYTPEMKTAMVLKAKDVIRRGCLEYDVSATDITSSFMAIRK 537 Query: 538 TMTASGRQATYTAGRTEETGHADLAWACLHAIDREPLAGG--GIHSSSFTEFY 588 TMT+SGR ATY A R+EE HADLAWA +HA+ EPL G +S+ EFY Sbjct: 538 TMTSSGRSATYEASRSEEASHADLAWATMHALLNEPLTAGISTPLTSTILEFY 590 >gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655470;genbank:gi:109289938;genbank:GeneI D:4157372 Length = 605 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/566 (55%), Positives = 404/566 (71%), Gaps = 4/566 (0%) Query: 15 RKVARTLYWQGWRIASIARHLDIKPATVASWCRREKWKDATPVERIEASLEVRMMVLIAK 74 ++ A++ YW G+ + I+R L+I +T+ASW +REKW + +PV R+EA+LE R+ +LI K Sbjct: 26 KREAQSKYWAGYTVTEISRQLNIPVSTIASWKKREKWDEISPVGRVEATLESRLNLLIMK 85 Query: 75 EKKDGADYKEIDLLGRQVERLARVRKYDETG-KESDLNPKIASRNAGPKRRAPRNEISDE 133 E K+ DYKE+D L R +E AR++KY G E+DLNP I +RN G +++ +N IS+E Sbjct: 86 ESKNNNDYKEMDALRRLLESTARIKKYSNGGGNEADLNPNIKNRNKGDRKKPEQNAISEE 145 Query: 134 QHKRIIEAFRDSLFDYQKVWYRNG-DQRTRNILKSRQIGATWYFAREALVDALDTDRNQI 192 Q + +I F D +F YQK W+ G R RNILKSRQIGAT+YFA EALVDAL T RNQI Sbjct: 146 QAELLINGFLDGMFHYQKKWHEAGLTHRIRNILKSRQIGATYYFAHEALVDALVTGRNQI 205 Query: 193 FLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLGTNARTAQSYHGNFYF 252 F+SASK QA F+ YI +A+ ADVEL G+ I LP+ + L FLGTN++TAQSYHGN YF Sbjct: 206 FISASKKQALQFRAYIVAYAKRVADVELKGETITLPNESQLIFLGTNSKTAQSYHGNLYF 265 Query: 253 DEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAHANRGRAAGERIQ 312 DE FWV +F E+ KVA+GMA K++R TYFSTPSS+TH A+ WSG NR R E+++ Sbjct: 266 DEIFWVNRFEEIRKVAAGMASQKQYRITYFSTPSSITHSAYLLWSGKLFNRKRPKAEQVE 325 Query: 313 IDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAEEFANLLMCHFID 372 ID SH L G C D QWRQIV + DA AGGCNLFDI++L+ E S +EF L MC FID Sbjct: 326 IDISHANLKNGKKCGDGQWRQIVNIYDAEAGGCNLFDIEQLKLENSPDEFEQLFMCEFID 385 Query: 373 DSLSVFKLSDLQRCMVDSWEEWAD-DFSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAP 431 D+ SVFK + +QRC+VDS E W D F+ RPFG++EVWVGYDP+ TGD + LVV+AP Sbjct: 386 DNQSVFKFTMMQRCLVDSMEVWRDYVFTDGYQRPFGNKEVWVGYDPSYTGDRSALVVIAP 445 Query: 432 PRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFP 491 P+VD G FR+LE F+G DF EQAA I AI +YNV +AIDTTG+G GVY++V+K P Sbjct: 446 PKVDGGKFRLLEYRTFKGADFAEQAAEIVAICAKYNVTRLAIDTTGLGVGVYEIVKKERP 505 Query: 492 AAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGW-TDLAAAFMAIKQTMTASGRQATYTA 550 AVAL Y+ E+K+++VLKG ++ GR +FD+ ++ A+FMAIK+ +T SGRQ TY A Sbjct: 506 DAVALTYNVELKSKMVLKGLDIISKGRFEFDSMHAVEVGASFMAIKKQITNSGRQVTYVA 565 Query: 551 GRTEETGHADLAWACLHAIDREPLAG 576 R+EE HADLAWACL EP G Sbjct: 566 DRSEEASHADLAWACLQVFINEPFDG 591 >gi|10658|lcl|protein:vir:268 Length: 605 # NCBI annotation: putative terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536648;genbank:gi:17975126;genbank:GeneID :929082 Length = 605 Score = 485 bits (1249), Expect = e-139, Method: Compositional matrix adjust. Identities = 266/598 (44%), Positives = 361/598 (60%), Gaps = 48/598 (8%) Query: 13 DVRKVARTLYWQGWRIASIARHLDIKP-ATVASWCRREKWKDATPVERIEASLEVRMMVL 71 ++R+ AR LY + W IA L++ + W + W+D + I+ ++ R+ L Sbjct: 6 EIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTL 65 Query: 72 IAKEKKDGADYKEIDLLGRQVERLARVRKYDETGKESDLN------------------PK 113 + E ++D+L R + +++K T + + N PK Sbjct: 66 LEVENPSKP---QLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPK 122 Query: 114 IAS--------RNAGP--KRRAPRNEISDEQHKRIIEA----FRDSLFDYQKVWYRNGDQ 159 S + + P KR+ +N++S+ I EA + DSLF YQ N Q Sbjct: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVSE-----ITEADFKLWHDSLFAYQHTMRNNLHQ 177 Query: 160 RTRNILKSRQIGATWYFAREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVE 219 RTRNILKSRQIGAT+YFA EAL A+ T NQIFLSAS+AQA VF++YI A++ +E Sbjct: 178 RTRNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIE 237 Query: 220 LTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRK 279 +TG+P L +GA L++L TN +TAQSYHG+ Y DEYFW+ KF ELNKVAS MA HK+WRK Sbjct: 238 ITGNPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRK 297 Query: 280 TYFSTPSSVTHEAFAFWSGAHANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLD 339 TYFSTPSS H A++FW+G + + I+ T E G LC D QWR +VT+ D Sbjct: 298 TYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIED 357 Query: 340 AMAGGCNLFDIDELRREYSAEEFANLLMCHFIDDSLSVFKLSDLQRCMVDS--WEEWADD 397 A GGC+LFDI+ELR EYS +F NL MC F+D + S+F+ + ++RCMVDS W+ D Sbjct: 358 AAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIWQ----D 413 Query: 398 FSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAA 457 + P RPFG REVW+GYDP+ T D+A L+VVAPP V FRVLE+H +RG F+ QA+ Sbjct: 414 YKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQAS 473 Query: 458 AIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFP-AAVALNYSPEVKTRLVLKGQSVVRN 516 I + +R+NV Y+ ID TG+G GV+ L+ P VA++YS E K RLV+K ++ Sbjct: 474 EISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDG 533 Query: 517 GRLQFDAGWTDLAAAFMAIKQTMTASGRQATYTAGRTEETGHADLAWACLHAIDREPL 574 RLQFDAG + A AFMAIK+ T SG T+ A R+E+ GHAD WA HA+ EPL Sbjct: 534 NRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 432 bits (1112), Expect = e-123, Method: Compositional matrix adjust. Identities = 256/590 (43%), Positives = 346/590 (58%), Gaps = 38/590 (6%) Query: 13 DVRKVARTLYWQGWRIASIARHLDIKPA-TVASWCRREKWKDATPVERIEASLEVRMMVL 71 ++R A+ LY + W I L + + W + W+D E +E ++ R+ VL Sbjct: 6 EIRNAAKGLYLKRWTPQEIKDELGLNSCRIIYYWAEKLGWRDLLTEEAVEDAINRRVQVL 65 Query: 72 IAKEKKDGADYKEID-LLGRQVERLARVRKYDETGKESDLNPKIA-SRNAGPKR------ 123 + +EKK + +E+D L+G V + K+ E +E L + A GP R Sbjct: 66 LHREKKTPGEQEELDRLIGHHVSLKEKALKWAE--REQALKAQRAEGSEPGPSRGKREHN 123 Query: 124 ----------RAPRNEISDEQHKRIIEAFRDSLFDYQ-KVWYRNGDQ---RTRNILKSRQ 169 + +NEI E + +LF YQ +V D RTRNILKSRQ Sbjct: 124 SQGGGGRKGGKKAKNEIGHLTADDFTE-WLGTLFGYQLRVREAKNDPALPRTRNILKSRQ 182 Query: 170 IGATWYFAREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPS 229 IG T+YFA EAL DA+ T NQIFLSA++AQA VF+ YI + A+ V LTG+PI+L + Sbjct: 183 IGMTYYFAGEALEDAILTGGNQIFLSATRAQAEVFRSYICKIAQTFLGVTLTGNPIVLSN 242 Query: 230 GATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVT 289 GA L+F TN+ +AQS GN Y DEYFW+P F +L+ VAS MA WRKTYFSTPSS Sbjct: 243 GAELHFCSTNSNSAQSRSGNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFSTPSSKV 302 Query: 290 HEAFAFWSGAHANRGRAAGERIQIDTSHEALVR--GMLCEDAQWRQIVTVLDAMAGGCNL 347 HEA+ FW+G R + R+ ID E +R G +C D QWR ++T+ DA+ GC+L Sbjct: 303 HEAYRFWTGDRWKGQRPS--RVAIDFPGEDDLRDGGRICPDRQWRYVITIEDAIRLGCHL 360 Query: 348 FDIDELRREYSAEEFANLLMCHFIDDSLSVFKLSDLQRCMVDS--WEEWADDFSPLLLRP 405 DI+EL+ EY E F L MC FIDD+LSVFK D++R VD WE D+ P P Sbjct: 361 IDIEELKDEYPEEVFDRLYMCRFIDDALSVFKFQDMERAGVDPTRWE----DYKPGRPDP 416 Query: 406 FGHREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQR 465 FG REVW+GYDP+ T D+A LVVVAPP V FRVLE+H +RG +F+ QA IE I ++ Sbjct: 417 FGRREVWMGYDPSRTRDNATLVVVAPPTVAGERFRVLEKHYWRGLNFQYQAQEIERIAKK 476 Query: 466 YNVGYIAIDTTGMGQGVYQLVRKFFPAAV-ALNYSPEVKTRLVLKGQSVVRNGRLQFDAG 524 + V Y+ +D +G+G GVY L++ F +NYS E K+RLVLK VV R+++D+ Sbjct: 477 FRVTYLGVDVSGIGAGVYDLLKPVFKGVCHPINYSIESKSRLVLKMIDVVEANRIEWDSS 536 Query: 525 WTDLAAAFMAIKQTMTASGRQATYTAGRTEETGHADLAWACLHAIDREPL 574 D+ AF+AIK++ T G Q T+ A R TGHAD+ +A HA+ EPL Sbjct: 537 DRDIPLAFLAIKRSTTGGG-QMTFRAARDNVTGHADVFFAIAHAVANEPL 585 >gi|19904|lcl|protein:vir:3781 Length: 607 # NCBI annotation: terminase # Family: family:all:169 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536821;genbank:gi:17981830;genbank:GeneID :929209 Length = 607 Score = 421 bits (1083), Expect = e-120, Method: Compositional matrix adjust. Identities = 239/583 (40%), Positives = 348/583 (59%), Gaps = 23/583 (3%) Query: 11 ENDVRKVARTLYWQGWRIASIARHLDIKPA-TVASWCRREKWKDATPVERIEASLEVRMM 69 +++V A+ LY + + IA L + + W + W++ IE + +R++ Sbjct: 15 DDEVIYAAKFLYLKKYTPKEIAEELGLNSTRPIYYWAEKYNWRNLISESGIEELIALRII 74 Query: 70 VLIAKEKKDGADYKEID-LLGRQVE----RLARVRKYDETGKESDLNPKIASRNAG---- 120 L +E K + KE++ L+ + ++ R A V K T K + + ++S + Sbjct: 75 TLTERENKSDQEIKELEALIDKDIQYKKQRAATVAKV--TAKSAVNSADVSSSDRSFADS 132 Query: 121 ------PKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATW 174 K++ +N+IS + + F DSLFDYQK N RNILKSRQIGAT+ Sbjct: 133 GDGDEHKKKKRVKNDIS-HVSPEMCQPFIDSLFDYQKHIRANKHHDVRNILKSRQIGATY 191 Query: 175 YFAREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLY 234 YF+ EAL DA+ + NQIFLSASK QA +FK YI + AR+ VELTG+PIIL +GA L+ Sbjct: 192 YFSFEALEDAIFSGDNQIFLSASKRQAEIFKNYIVKMAREYFGVELTGNPIILSNGAELH 251 Query: 235 FLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFA 294 FL TN T+Q G+ Y DEY W+ F+ N VAS MA H +WR+TYFSTPSS HE+++ Sbjct: 252 FLSTNKNTSQGNSGHVYGDEYAWIRDFQRFNDVASAMATHAKWRETYFSTPSSKFHESYS 311 Query: 295 FWSGAHANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGC-NLFDIDEL 353 FWSG + G + + T E G LC D QWR +VT+ DA+ GG LF+I++L Sbjct: 312 FWSGDNWRDGDPKRKNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKGGAGTLFNIEKL 371 Query: 354 RREYSAEEFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWV 413 ++ YS F L MC +IDD+ S+F + L +C VD +W DF+P RPFG REVW Sbjct: 372 KQRYSKYAFNQLYMCVWIDDADSIFTVHQLLKCGVDI-SKWK-DFNPKADRPFGDREVWG 429 Query: 414 GYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAI 473 G+DPA +GD A V++APP + +RVL R+Q+ G + QA I A+ ++YN+ YI I Sbjct: 430 GFDPAHSGDGASFVIIAPPALPSEKYRVLARYQWNGLSYVYQANQIRALYEKYNMTYIGI 489 Query: 474 DTTGMGQGVYQLVRKFF-PAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAF 532 D TG+G GVY+LV++F AA A+ Y+PE KT +VLK +V +G++++ D+ +F Sbjct: 490 DATGVGYGVYELVKEFARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSESELDIVPSF 549 Query: 533 MAIKQTMTASGRQATYTAGRTEETGHADLAWACLHAIDREPLA 575 + IK T SG T+TA RT +T HAD+ +A +AI+++ L+ Sbjct: 550 LMIKHQSTKSGNTMTFTAERTVKTQHADVFFAICNAINKKSLS 592 >gi|16385|lcl|protein:vir:3744 Length: 607 # NCBI annotation: orf15 # Family: family:all:169 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043485;genbank:gi:9628620;genbank:GeneID: 1261142 Length = 607 Score = 419 bits (1077), Expect = e-119, Method: Compositional matrix adjust. Identities = 235/582 (40%), Positives = 347/582 (59%), Gaps = 21/582 (3%) Query: 11 ENDVRKVARTLYWQGWRIASIARHLDIKPA-TVASWCRREKWKDATPVERIEASLEVRMM 69 +++V A+ LY + + IA L + + W + W++ IE + +R++ Sbjct: 15 DDEVIYAAKFLYLKKYTPKEIAEELGLNSRRPIYYWAEKYNWRNLLSESGIEELIALRII 74 Query: 70 VLIAKEKKDGADYKEID-LLGRQVE-RLARVRKYDETGKESDLNPKIASRNA-------- 119 L +E K + KE++ L+ + ++ + R + +S +N S N Sbjct: 75 TLTERENKSDQEIKELEALIDKDIQYKKQRAATVAKVTAKSAVNSADVSGNERAFADSGD 134 Query: 120 GPKRRAPRNEISDEQH--KRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYFA 177 G +R+ + +D H + + F DSLFDYQK N RNILKSRQIGAT+YF+ Sbjct: 135 GDERKKKKRVKNDISHVTPEMCQPFIDSLFDYQKHIRSNKHHDVRNILKSRQIGATYYFS 194 Query: 178 REALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFLG 237 EAL DA+ + NQIFLSASK QA +FK YI + AR+ VELTG+PIIL +GA L+FL Sbjct: 195 FEALEDAIFSGDNQIFLSASKRQAEIFKNYIVKMAREYFGVELTGNPIILSNGAELHFLS 254 Query: 238 TNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWS 297 TN T+Q G+ Y DEY W+ F+ + VAS MA H++WR+TYFSTPSS HE+++FWS Sbjct: 255 TNKNTSQGNSGHVYGDEYAWIRDFQRFDDVASAMATHEKWRETYFSTPSSKFHESYSFWS 314 Query: 298 GAHANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCN-LFDIDELRRE 356 G + G + + T E G LC D QWR +VT+ DA+ GG + LF+I++L++ Sbjct: 315 GDNWRDGDPKRKNVPFPTFAELRDGGRLCPDGQWRYVVTIEDALKGGADKLFNIEKLKQR 374 Query: 357 YSAEEFANLLMCHFIDDSLSVFKLSDLQRCMVD--SWEEWADDFSPLLLRPFGHREVWVG 414 YS F L MC +IDD+ S+F + L +C VD W+ DF+P RPFG REVW G Sbjct: 375 YSKYAFNQLYMCIWIDDADSIFNVKQLLKCGVDIAKWK----DFNPKADRPFGDREVWGG 430 Query: 415 YDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAID 474 +DPA +GD A V++APP + +R+L R+Q+ G + QA I A+ ++YN+ YI ID Sbjct: 431 FDPAHSGDGASFVIIAPPALPGEKYRMLARYQWHGLSYVYQANQIRALYEKYNMTYIGID 490 Query: 475 TTGMGQGVYQLVRKFF-PAAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAFM 533 TG+G GVY+LV++F AA A+ Y+PE KT +VLK +V +G++++ D+ +F+ Sbjct: 491 ATGVGYGVYELVKEFARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSESELDIVPSFL 550 Query: 534 AIKQTMTASGRQATYTAGRTEETGHADLAWACLHAIDREPLA 575 IK T SG T+TA RT +T HAD+ +A +AI+++ L+ Sbjct: 551 MIKHQSTKSGNTMTFTAERTVKTQHADVFFAICNAINKKSLS 592 >gi|2683|lcl|protein:vir:98854 Length: 603 # NCBI annotation: hypothetical protein # Family: family:all:169 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654730;genbank:gi:109302915;genbank:GeneI D:4156059 Length = 603 Score = 419 bits (1077), Expect = e-119, Method: Compositional matrix adjust. Identities = 239/582 (41%), Positives = 338/582 (58%), Gaps = 23/582 (3%) Query: 11 ENDVRKVARTLYWQGWRIASIARHLDIKPA-TVASWCRREKWKDATPVERIEASLEVRMM 69 +++V A+ LY + W IA+ L + A + W + W++ IE + +R++ Sbjct: 14 DDEVIYSAKFLYLKKWTPNEIAKELSLNSARPIYYWAEKYNWRNLINENGIEELIALRII 73 Query: 70 VLIAKEKKDGADYKEID-LLGRQVERLARVRKYDETGKES------------DLNPKIAS 116 L +E K + KE++ L+ + +E + K ++ ++S D Sbjct: 74 TLTERENKTDQEIKELEALIDKDIEYKKQRAKKAQSAQKSAVTLSESFGDFADSGHGNDG 133 Query: 117 RNAGPKRRAPRNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRTRNILKSRQIGATWYF 176 N ++ +N+IS +++ F DSLFDYQK N RNILKSRQIGAT+YF Sbjct: 134 DNKKKSKKRAKNDIS-HVTPEMVQPFIDSLFDYQKHCRANKHHSVRNILKSRQIGATYYF 192 Query: 177 AREALVDALDTDRNQIFLSASKAQAHVFKQYITQFARDAADVELTGDPIILPSGATLYFL 236 A EAL DA+ T NQIFLSASK QA +FK YI + AR DVEL G PIIL +GA L+FL Sbjct: 193 AFEALEDAIFTGDNQIFLSASKRQAEIFKTYIIKMARAYFDVELKGSPIILSNGAELHFL 252 Query: 237 GTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFW 296 TNA T+Q G+ Y DEY W+ F N V+S MA HK WR+TYFSTPSS H ++AFW Sbjct: 253 ATNANTSQGNSGHVYGDEYAWIRDFERFNTVSSAMATHKHWRETYFSTPSSKFHPSYAFW 312 Query: 297 SGAHANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCN-LFDIDELRR 355 SG G + + E G C D WR ++T+ DA+ GG LFDID L++ Sbjct: 313 SGDMWKEGDPKRANVVFPSFEELRDGGRFCPDGTWRYVITIEDALKGGAGVLFDIDALKQ 372 Query: 356 EYSAEEFANLLMCHFIDDSLSVFKLSDLQRCMVD--SWEEWADDFSPLLLRPFGHREVWV 413 +YS FA L MC ++DD+ S+F + L +C VD W+ D +P RPFG REVW Sbjct: 373 KYSKYAFAQLFMCVWVDDADSIFNIKKLLKCGVDIAKWK----DHNPNDARPFGAREVWG 428 Query: 414 GYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIAI 473 GYDPA +GD A V+VAPP + +RVL R+Q+ G ++ QAA I+ + ++YN+ YI I Sbjct: 429 GYDPAHSGDGASFVIVAPPALLKEKYRVLARYQWNGLSYKYQAAQIKQLFEKYNMTYIGI 488 Query: 474 DTTGMGQGVYQLVRKFFP-AAVALNYSPEVKTRLVLKGQSVVRNGRLQFDAGWTDLAAAF 532 D TG+G GVY+ V++F AV L Y+PE KT +VLK +V + ++++D D+ +F Sbjct: 489 DATGVGYGVYEQVKEFAGRKAVPLVYNPESKTEMVLKVHDLVEHEQIEWDENERDIVPSF 548 Query: 533 MAIKQTMTASGRQATYTAGRTEETGHADLAWACLHAIDREPL 574 + IK T T SG T+ A RT +T HAD+ +A +AI+ + L Sbjct: 549 LMIKHTSTKSGNTMTFVAERTVKTQHADVFFAIANAINNKSL 590 >gi|13742|lcl|protein:vir:1826 Length: 248 # NCBI annotation: W protein # Family: family:all:169 # MgeID: mge:324 # MgeName: 186 # Cross-refs: genbank:acc:NP_052250;genbank:gi:9634057;genbank:GeneID: 1262463 Length = 248 Score = 133 bits (335), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 121/244 (49%), Gaps = 13/244 (5%) Query: 127 RNEISDEQHKRIIEAFRDSLFDYQKVWYRNGDQRT-RNILKSRQIGATWYFAREALVDAL 185 N S Q + + + + FDYQ W R G R+I KSRQIGAT F+REAL+DAL Sbjct: 3 NNVFSQSQIQAMADILHNDSFDYQATWLRVGKLNIDRSITKSRQIGATQLFSREALLDAL 62 Query: 186 DTDRNQIFLSASKAQAHVFKQYITQF-ARDAADVELTGDPIILPSGATLYFLGTNARTAQ 244 T N ++ + + A V Y++ AR + G + L GA + F+G + A Sbjct: 63 TTGDNHVWFAHTIEHARVALMYMSNLSARVGVSLTSNGHSLQLDDGAVISFVGEESHCA- 121 Query: 245 SYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWRKTYFSTPSSVTHEAFAFWSGAHANRG 304 + GN Y DE+ W KVA+G+A HKR T F++PS ++AF W+G R Sbjct: 122 ALAGNVYLDEFGWFNNPLRAAKVAAGIACHKRHSLTMFTSPSD-NYDAFRVWNG--TTRR 178 Query: 305 RAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFDIDELRREYSAEEFAN 364 I S + C D WRQ VT+ A GCNLF DE++ EYS +++ Sbjct: 179 HRPSPLINTGDS-------VFCTDGVWRQSVTLDAACQRGCNLFAPDEIKHEYSDDDYRL 231 Query: 365 LLMC 368 L C Sbjct: 232 LFGC 235 >gi|1931|lcl|protein:vir:99847 Length: 486 # NCBI annotation: large terminase subunit # Family: family:all:460 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164067;genbank:gi:56692599;genbank:GeneID :3192575 Length = 486 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 113/468 (24%), Positives = 181/468 (38%), Gaps = 70/468 (14%) Query: 135 HKRIIEAFRDSLF-DYQKVWYRNGDQRTRNILKSRQIGATW---YFARE------ALVDA 184 + ++I A D++F YQ W + R + + KSRQIG +W Y A E A VD Sbjct: 6 NAKVIPANPDAIFLPYQSRWITD-PSRLKLMQKSRQIGLSWSTAYAAGERTAAESARVDQ 64 Query: 185 LDTDRN----QIFLSASKAQAHVFKQYITQFARDAADVELTGDPIIL--PSGATLYFLGT 238 + R+ ++FL K A + Q DV+ +L +G ++ + + Sbjct: 65 WVSSRDDLQARLFLEDCKMWAGIMNQAAKDLGEIVIDVKNKISAYVLEFANGRRIHSMSS 124 Query: 239 NARTAQSYHGNFYFDEYFWVPKFRELNKVAS-----GMAMH----KRWRKTYFSTPSSVT 289 N G DE+ P R+L +A G AM R + +F+ Sbjct: 125 NPDAQAGKRGGRILDEFALHPDPRKLWSIAYPGITWGGAMEIISTHRGSQNFFNQLVREI 184 Query: 290 HEAFAFWSGAHANRGRAAGERIQIDTSHEALVRGMLCEDAQWRQIVTVLDAMAGGCNLFD 349 E G + T +AL +G L + +Q++ D + G Sbjct: 185 VEG-----------GNPKNISLHTVTLQDALNQGFLF---KLQQMLPADDEIQGMDEAQY 230 Query: 350 IDELRREYSAEE-FANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGH 408 D +R + EE F MC+ DD ++ + + W +P G Sbjct: 231 FDFIRAGCADEESFQQEYMCNPADDDVAFLEYDLIASAEYPQTANWQ--------QPEGG 282 Query: 409 REVWVGYDPALTGDSAGLVVVAPPRVDDGAF-RVLERHQFRGNDFEEQAAAIEAITQRY- 466 R ++ G D D L ++ + D + R +ER Q + +A EAI + Sbjct: 283 R-LFAGVDIGRKKDLTVLWILE--LLGDVLYTRHVERLQ------NMRKSAQEAILWPWF 333 Query: 467 -NVGYIAIDTTGMGQGVYQLVRKFFPA--AVALNYSPEVKTRLV--LKGQSVVRNGRLQF 521 I ID TG+G G + F A+ ++P VK L ++G R+ + Sbjct: 334 QRCERICIDATGLGIGWADDAQDQFGEHRVEAVTFTPRVKEALAYPIRGAMEDHKVRIPY 393 Query: 522 DAGWTDLAAAFMAIKQTMTASGRQATYTAGRTEETGHADLAWACLHAI 569 D + AA + + TA+G +TA RT + GHAD WA AI Sbjct: 394 D---PKIRAALREVTKQTTAAG-NIRFTAERTAD-GHADEFWALGLAI 436 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 18/140 (12%) Query: 339 DAMAGGCNLFDIDELRREYSAEEFANLLMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDF 398 + M G + D D L S + N+ C + DS S L D++ ++D ++ Sbjct: 330 NLMKGLLDKRDSDLLSGNLSDFQVKNM-NCWLLADSNSFLDLKDIENAVIDDFD------ 382 Query: 399 SPLLLRPFGHREVWVGYDPALTGDSAGLVVVAPPRVDDGAFR-VLERHQFRGNDFEEQAA 457 + V+VG D ++ D+ L V P +DG+ + +E+H F +QA Sbjct: 383 -------IKGKRVYVGLDASMFSDNTALGFVYPYLGEDGSQKWHIEQHSFIP---WQQAG 432 Query: 458 AIEAITQRYNVGYIAIDTTG 477 +IEA ++ + Y ++T G Sbjct: 433 SIEAKIEQDGINYRDLETKG 452 >gi|10609|lcl|protein:vir:106508 Length: 492 # NCBI annotation: Pas60 # Family: family:all:144 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024846;genbank:gi:48697461;genbank:GeneID :2846165 Length = 492 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 23/163 (14%) Query: 331 WRQIVTVLDAMAGG-CNLFDIDELRREYSAEE--FANLLMCHF-IDDSLSVFKLSDLQRC 386 W + VT+ +A+A G + D+ R ++ ++ F N ++ F D SV L+ L+ Sbjct: 220 WTRHVTLEEAIASGRISRAWADQRRSQWGSDSAVFHNRVLGEFHASDEDSVIPLAWLE-A 278 Query: 387 MVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQ 446 ++ W EW P P G +W G D GD L DG LE ++ Sbjct: 279 AIERWHEWDRQGRP---SPGG--PLWTGVDVGRGGDETVLAA------RDGWAVTLETNR 327 Query: 447 FRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKF 489 R + A + I R G ID G+G GV+ +R+ Sbjct: 328 RR-----DTMATVGLIQARE--GRAIIDVIGLGAGVFDRLREL 363 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 32.7 bits (73), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 22/113 (19%) Query: 376 SVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAPPRVD 435 S L ++QR ++D ++ R+V++G+D + T D+ + P Sbjct: 375 SYLSLDNIQRSIIDHFD-------------VNGRDVFIGFDGSQTNDNTSFGFIYPYTDH 421 Query: 436 DGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIA------IDTTGMGQGV 482 D +++H F QA IEA +++ + Y+ +D T + GV Sbjct: 422 DKHMFHVQQHSFIP---FAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGV 471 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 32.7 bits (73), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 22/113 (19%) Query: 376 SVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGLVVVAPPRVD 435 S L ++QR ++D ++ R+V++G+D + T D+ + P Sbjct: 376 SYLSLDNIQRSIIDRFD-------------VNGRDVFIGFDGSQTNDNTSFGFIYPYTDH 422 Query: 436 DGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVGYIA------IDTTGMGQGV 482 D +++H F QA IEA +++ + Y+ +D T + GV Sbjct: 423 DKHMFHVQQHSFIP---FAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGV 472 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 32.0 bits (71), Expect = 0.020, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 455 QAAAIEAITQRYNVGYIAIDTTGMGQGVYQ-LVRKFFPAAVALNYSP 500 QA I I + Y+ YI +DT +G GVY L + + A Y P Sbjct: 393 QATRIRQIYEDYDCDYIVLDTQSIGLGVYDALCQPLYDKERAKEYEP 439 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 30.4 bits (67), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 17/113 (15%) Query: 366 LMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAG 425 + C + DS S L D++ ++ ++ + V+VG D ++ D+ Sbjct: 356 MNCWLLADSNSFLDLKDIENAVIPEFDRRG-------------KRVYVGLDASMFSDNTA 402 Query: 426 LVVVAPPRVDDGAFR-VLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTG 477 + V P +DG+ + +E+H F +QA ++EA ++ V Y ++ G Sbjct: 403 IGFVYPYLGEDGSQKWHVEQHSFIP---WQQAGSLEAKMEQDGVNYRDLEAKG 452 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 30.4 bits (67), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 17/111 (15%) Query: 368 CHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAGLV 427 C + DS S L+D++ ++ ++ +R G R V+VG D ++ D+ + Sbjct: 360 CWLLADSNSFLDLTDIENAVIPEFD----------IR--GKR-VYVGLDASMFSDNTAIG 406 Query: 428 VVAPPRVDDGAFR-VLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTG 477 V P +DG+ + +E+H F +QA ++EA ++ V Y ++ G Sbjct: 407 FVYPYLGEDGSQKWHVEQHSFIP---WQQAGSLEAKMEQDGVNYRDLEEKG 454 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 30.4 bits (67), Expect = 0.060, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%) Query: 406 FGHREVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQR 465 FG R+V++G+D + T D L V P G+ L +H + +A +IEA QR Sbjct: 371 FG-RDVFIGFDYSQTNDDTSLAFVFPHS---GSKFHLYQHSWIP---IAKAGSIEAKEQR 423 Query: 466 YNVGYIAIDTTGMG 479 N+ Y A+ G Sbjct: 424 DNIDYRAVQEKGFA 437 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 30.0 bits (66), Expect = 0.069, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%) Query: 458 AIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALNYSPEVKT-------RLVLKG 510 I+ I + I I+T G+G G+YQ + + P+ V + K +L G Sbjct: 336 VIKQIYDEFKPQLIFIETNGIGMGLYQFMEAYTPSIVGYYTTQRKKVHGSDLLAKLYEDG 395 Query: 511 QSVVRNGRL 519 + ++R+ RL Sbjct: 396 RLILRSKRL 404 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 30.0 bits (66), Expect = 0.076, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 17/113 (15%) Query: 366 LMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAG 425 + C + DS S L D++ ++ ++ + V+VG D ++ D+ Sbjct: 102 MNCWLLADSNSFLDLKDIENAVIPEFD-------------IRGKRVYVGLDASMFSDNTA 148 Query: 426 LVVVAPPRVDDGAFR-VLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTG 477 + V P +DG+ + +E+H F +QA ++EA ++ V Y ++ G Sbjct: 149 IGFVYPYVGEDGSQKWHIEQHSFIP---WQQAGSLEAKMEQDGVNYRDLEQKG 198 >gi|12378|lcl|protein:vir:79648 Length: 523 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285519;genbank:gi:148734502;genbank:Ge neID:5220006 Length = 523 Score = 27.7 bits (60), Expect = 0.44, Method: Compositional matrix adjust. Identities = 14/51 (27%), Positives = 23/51 (45%) Query: 467 NVGYIAIDTTGMGQGVYQLVRKFFPAAVALNYSPEVKTRLVLKGQSVVRNG 517 N+ I ++ G G+ Q RK FP + + K + Q V++NG Sbjct: 410 NLRKIYVEDKASGTGLIQNCRKAFPIEITPVQRDKDKVTRCMDAQPVIKNG 460 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 153 WYRNGDQRTRNILKSRQIGATWYFAREAL-VDALDTDRNQIFLSASKAQAHVFKQYITQF 211 + ++G +R + I R +G +W A L V +D DR + +SASK +A F + + Sbjct: 40 YLQHGPKRLQ-ISAFRGVGKSWITAAFVLWVLFVDPDRKIMVISASKERADNFSIFCQKL 98 Query: 212 ARD 214 D Sbjct: 99 ILD 101 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/51 (27%), Positives = 24/51 (47%) Query: 449 GNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALNYS 499 G+D E A + I + + +I ID +G+GQ + L P + + S Sbjct: 417 GDDTAEVAEYVRRIHEAELLEHIGIDPSGVGQILDSLAEAGIPDGIVVGIS 467 >gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003892;genbank:gi:45686309;genbank:GeneID :2773034 Length = 527 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 444 RHQFRGNDFEEQAAAIEAITQRYNVGY-----IAIDTTGMGQGVYQLVRKFFPAAVALNY 498 R ++ D E Q A R+N I ++ G G+ Q +RK P ++ Sbjct: 386 RGKWEAPDMERQFTAFVNQAWRHNKSMGVLRKIYVEDKASGTGLIQNLRKKTPISITPLQ 445 Query: 499 SPEVKTRLVLKGQSVVRNGRL 519 + K + Q V++ GR+ Sbjct: 446 RNKDKVTRAMDAQPVIKAGRV 466 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 24.6 bits (52), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 219 ELTGDPIILPSGATLYFLGTNARTAQSYHGNFYFDEYFWVPKFRELNKVASGMAMHKRWR 278 +L G P+ L ++ T+ G FY ++ ++P R K+A+ + WR Sbjct: 341 DLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYVGQHSFMPDARANEKMATDKVPYDLWR 400 Query: 279 KTYFSTPSS 287 + F T +S Sbjct: 401 EMGFITYTS 409 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID: 1262208 Length = 568 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 445 HQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALN 497 H F D E A I + + YN ++ + G V +R+ +P N Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYN 463 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneID :2653342 Length = 568 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 445 HQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALN 497 H F D E A I + + YN ++ + G V +R+ +P N Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYN 463 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID: 1262002 Length = 568 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 445 HQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALN 497 H F D E A I + + YN ++ + G V +R+ +P N Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYN 463 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneID :935714 Length = 568 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 445 HQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALN 497 H F D E A I + + YN ++ + G V +R+ +P N Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYN 463 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneID :2653280 Length = 568 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 445 HQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALN 497 H F D E A I + + YN ++ + G V +R+ +P N Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYN 463 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:GeneI D:4397501 Length = 568 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/53 (24%), Positives = 21/53 (39%) Query: 445 HQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTGMGQGVYQLVRKFFPAAVALN 497 H F D E A I + + YN ++ + G V +R+ +P N Sbjct: 411 HWFGHLDAELFAHLISQVCRMYNNAFVGPERNNHGHAVILKLRELYPTRYIYN 463 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 14/17 (82%) Query: 73 AKEKKDGADYKEIDLLG 89 AKEK+DG +Y+E++ G Sbjct: 446 AKEKQDGINYRELETKG 462 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 23.9 bits (50), Expect = 5.3, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 14/17 (82%) Query: 73 AKEKKDGADYKEIDLLG 89 AKEK+DG +Y+E++ G Sbjct: 460 AKEKQDGINYRELEKYG 476 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 23.9 bits (50), Expect = 5.5, Method: Compositional matrix adjust. Identities = 9/17 (52%), Positives = 14/17 (82%) Query: 73 AKEKKDGADYKEIDLLG 89 AKEK+DG +Y+E++ G Sbjct: 457 AKEKQDGINYRELEKYG 473 >gi|13914|lcl|protein:vir:9881 Length: 168 # NCBI annotation: hypothetical protein # Family: family:all:629 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795643;genbank:gi:28876398;genbank:GeneID :1257929 Length = 168 Score = 23.9 bits (50), Expect = 6.1, Method: Composition-based stats. Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 131 SDEQHKRIIEAFRDSLF 147 SDE HK++ EAF S F Sbjct: 87 SDETHKQLGEAFEKSEF 103 >gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: putative phage terminase large subunit # Family: family:all:140 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039815;genbank:gi:126010850;genbank:Ge neID:5076210 Length = 689 Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust. Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 409 REVWVGYDPALTGDSAGLVVV 429 R W G L DSAGLV+V Sbjct: 177 RFAWAGSPTELAADSAGLVLV 197 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 23.5 bits (49), Expect = 8.2, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 14/131 (10%) Query: 410 EVWVGYDPALTGDSAGLVVVAPPRVDDGAFRVLERHQFRGNDFEEQAAAIEAITQRYNVG 469 E +G D +A L + D + VLE +Q + AA I+ RY V Sbjct: 280 ETLLGIDVGYRDPTAVLTI--KYHYDTDTYYVLEEYQQAEKTTAQHAAYIQHCIDRYKVD 337 Query: 470 YIAIDTTGMGQGVYQLVRKFFPAAVALNYSPEVKTRLVLKG----QSVVRNGRLQFDAGW 525 I +D+ R+ + +P K+ VL G Q++ + G++ DA Sbjct: 338 RIFVDSAAAQ------FRQDLAYEHEIASAPAKKS--VLDGLACLQALFQQGKIIVDASC 389 Query: 526 TDLAAAFMAIK 536 + L A K Sbjct: 390 SSLIHALQNYK 400 >gi|21182|lcl|protein:vir:94185 Length: 1088 # NCBI annotation: putative ATP-dependent DNA helicase # Family: family:all:1546 # MgeID: mge:1500 # MgeName: phiEL # Cross-refs: genbank:acc:YP_418044;genbank:gi:82700944;goa:Q2Z170;int erpro:IPR000871;uniprot:Q2Z170;genbank:GeneID:5176636 Length = 1088 Score = 23.1 bits (48), Expect = 9.8, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%) Query: 345 CN-----LFDIDELRREYSAEEFANLLMCHFIDDSLSVFK 379 CN L D LR ++ A L+ HF +DSLS K Sbjct: 21 CNNLPKELIDDKRLRIDWEARTDDETLLAHFNEDSLSGIK 60 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.321 0.134 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 273,274 Number of Sequences: 514 Number of extensions: 12852 Number of successful extensions: 125 Number of sequences better than 100.0: 48 Number of HSP's better than 100.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 51 length of query: 589 length of database: 206,069 effective HSP length: 77 effective length of query: 512 effective length of database: 166,491 effective search space: 85243392 effective search space used: 85243392 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)