BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:98634|NCBI_annot:putative major tail protein|genbank:acc:YP_001039929;genbank:gi:126011104;genbank:GeneID:4 818470 (196 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|7052|lcl|protein:vir:98634 Length: 196 # NCBI annotation: put... 392 e-111 gi|19033|lcl|protein:vir:9649 Length: 194 # NCBI annotation: put... 345 2e-97 gi|2230|lcl|protein:vir:93909 Length: 213 # NCBI annotation: ORF... 85 5e-19 gi|11077|lcl|protein:vir:78324 Length: 195 # NCBI annotation: Ts... 85 5e-19 gi|14334|lcl|protein:vir:9365 Length: 213 # NCBI annotation: maj... 84 1e-18 gi|8817|lcl|protein:vir:96971 Length: 213 # NCBI annotation: ORF... 84 1e-18 gi|11428|lcl|protein:vir:78634 Length: 213 # NCBI annotation: ma... 84 1e-18 gi|3118|lcl|protein:vir:94417 Length: 213 # NCBI annotation: ORF... 84 1e-18 gi|17420|lcl|protein:vir:2690 Length: 213 # NCBI annotation: maj... 84 1e-18 gi|19938|lcl|protein:vir:4861 Length: 203 # NCBI annotation: maj... 41 9e-06 gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hyp... 39 4e-05 gi|13862|lcl|protein:vir:4835 Length: 203 # NCBI annotation: MPS... 38 8e-05 gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hyp... 37 2e-04 gi|6166|lcl|protein:vir:98344 Length: 317 # NCBI annotation: hyp... 30 0.016 gi|13181|lcl|protein:vir:81108 Length: 317 # NCBI annotation: hy... 30 0.016 gi|16588|lcl|protein:vir:9416 Length: 317 # NCBI annotation: phi... 30 0.016 gi|12529|lcl|protein:vir:80010 Length: 317 # NCBI annotation: hy... 30 0.016 gi|17446|lcl|protein:vir:4606 Length: 317 # NCBI annotation: hyp... 30 0.016 gi|4006|lcl|protein:vir:100188 Length: 210 # NCBI annotation: pu... 30 0.020 gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: pu... 30 0.022 gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: maj... 25 0.75 gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: maj... 24 1.1 gi|12298|lcl|protein:vir:79536 Length: 247 # NCBI annotation: pu... 23 3.2 gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp... 22 5.4 gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp1... 22 5.4 gi|15908|lcl|protein:vir:3418 Length: 641 # NCBI annotation: DNA... 22 5.9 gi|17272|lcl|protein:vir:387 Length: 640 # NCBI annotation: gp2 ... 22 6.9 gi|5218|lcl|protein:vir:106658 Length: 217 # NCBI annotation: OR... 21 8.8 gi|19556|lcl|protein:vir:10337 Length: 167 # NCBI annotation: OR... 21 9.1 >gi|7052|lcl|protein:vir:98634 Length: 196 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039929;genbank:gi:126011104;genbank:Ge neID:4818470 Length = 196 Score = 392 bits (1007), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/196 (100%), Positives = 196/196 (100%) Query: 1 MKEKYMQAIGFKRMTITVLDNETNSFVIEGTKDKGATKVAKISGLASEPVKTFGSDIAYY 60 MKEKYMQAIGFKRMTITVLDNETNSFVIEGTKDKGATKVAKISGLASEPVKTFGSDIAYY Sbjct: 1 MKEKYMQAIGFKRMTITVLDNETNSFVIEGTKDKGATKVAKISGLASEPVKTFGSDIAYY 60 Query: 61 TSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLEAPATGGKN 120 TSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLEAPATGGKN Sbjct: 61 TSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLEAPATGGKN 120 Query: 121 AYLGFFKGTFSMDDIEWKSKEEKNEGLDSQKLVFTAQPGDKGEAKGQYVGWAFDEETEGK 180 AYLGFFKGTFSMDDIEWKSKEEKNEGLDSQKLVFTAQPGDKGEAKGQYVGWAFDEETEGK Sbjct: 121 AYLGFFKGTFSMDDIEWKSKEEKNEGLDSQKLVFTAQPGDKGEAKGQYVGWAFDEETEGK 180 Query: 181 GTNAQQLKALLEAKKD 196 GTNAQQLKALLEAKKD Sbjct: 181 GTNAQQLKALLEAKKD 196 >gi|19033|lcl|protein:vir:9649 Length: 194 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795411;genbank:gi:28876184;genbank:GeneID :1257698 Length = 194 Score = 345 bits (885), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 174/193 (90%), Positives = 182/193 (94%), Gaps = 3/193 (1%) Query: 6 MQAIGFKRMTITVLDNETNSFVIEGTKDKGATKVAKISGLASEPVKTFGSDIAYYTSRRG 65 MQAIGFKRMTITVLD+ TNSF+IEGTKDKGATKVAKISGLASEPVKTFGSDIAYYTSRRG Sbjct: 1 MQAIGFKRMTITVLDSTTNSFIIEGTKDKGATKVAKISGLASEPVKTFGSDIAYYTSRRG 60 Query: 66 VGDVKMETEAIDIPFEVLKVILGYKD---NKGVTFVGEDTESPEVSVLLEAPATGGKNAY 122 VGDVKMETEAIDIPF+VLK ILGYKD + GVTFVGEDTESPEVSVLLEAPATGGKNAY Sbjct: 61 VGDVKMETEAIDIPFDVLKKILGYKDGSSSTGVTFVGEDTESPEVSVLLEAPATGGKNAY 120 Query: 123 LGFFKGTFSMDDIEWKSKEEKNEGLDSQKLVFTAQPGDKGEAKGQYVGWAFDEETEGKGT 182 LGFFKGTFSMDDIEWKSKEEKNEGLDSQKLVFTAQPGD+ EAKGQYVGWAFD E EGKGT Sbjct: 121 LGFFKGTFSMDDIEWKSKEEKNEGLDSQKLVFTAQPGDEDEAKGQYVGWAFDAEAEGKGT 180 Query: 183 NAQQLKALLEAKK 195 NA+QL+ LL+ KK Sbjct: 181 NAKQLEQLLKVKK 193 >gi|2230|lcl|protein:vir:93909 Length: 213 # NCBI annotation: ORF017 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239944;genbank:gi:66395605;genbank:GeneID :5130975 Length = 213 Score = 85.1 bits (209), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 9 IGFKRMTITVLDNETNSFVIEGT--KDKGATKVAKISGLASEPVKTFGSDIAYYTSRRGV 66 +GFKR+ + V + E V T +KG T I+GLA + V F S+ + ++G Sbjct: 10 VGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNKRVWMKKQGT 69 Query: 67 GDVKMETEAIDIPFEVLKVILGY-KDNKGVTFVGEDTESPEVSVLLEAP-ATGGKNAYLG 124 +VK + +IP E L ++G KD G ++VGE+T +P V+V+ E+ G+ Y+ Sbjct: 70 NEVKSDMSIFNIPSEDLNTVIGRSKDKNGTSWVGENTRAPYVTVIGESEDGLTGQPVYVA 129 Query: 125 FFKGTFSMDDIEWKSKEEKNEGLDSQKL 152 KGTFS+D IE+K++ EK E + KL Sbjct: 130 LLKGTFSLDSIEFKTRGEKAEAPEPTKL 157 >gi|11077|lcl|protein:vir:78324 Length: 195 # NCBI annotation: Tsh # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468650;genbank:gi:157325228;genbank:Ge neID:5601670 Length = 195 Score = 85.1 bits (209), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 5/173 (2%) Query: 6 MQAIGFKRMTITVLDNE----TNSFVIEGTKDKGATKVAKISGLASEPVKTFGSDIAYYT 61 + IGF++ T + D + T + G KG T A ISGL +E +K F S+ YY Sbjct: 2 ITTIGFEKATFGIYDEKDEKVTEKVEVNGKNKKGGTVEADISGLDAEAIKVFASNGPYYI 61 Query: 62 SRRGVGDVKMETEAIDIPFEVLKVILGYKDNK-GVTFVGEDTESPEVSVLLEAPATGGKN 120 S++G GDVK +++PFE+ + +LG + N G+ VG++T P S ++E+ G+ Sbjct: 62 SKKGSGDVKQTIGIMELPFELGQKLLGRQKNADGIVTVGKNTAPPYASCVMESETLRGEP 121 Query: 121 AYLGFFKGTFSMDDIEWKSKEEKNEGLDSQKLVFTAQPGDKGEAKGQYVGWAF 173 + KG + DD++ + E+K + ++ L D G+ VG F Sbjct: 122 VFFALLKGKYGQDDVKLNTSEDKPKEPEATSLTGEFVYNDAGDVFAMAVGEEF 174 >gi|14334|lcl|protein:vir:9365 Length: 213 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803343;genbank:gi:29028654;genbank:GeneID :1258106 Length = 213 Score = 84.0 bits (206), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 9 IGFKRMTITVLDNETNSFVIEGT--KDKGATKVAKISGLASEPVKTFGSDIAYYTSRRGV 66 +GFKR+ + V + E V T +KG T I+GLA + V F S+ + ++G Sbjct: 10 VGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNKRVWMKKQGT 69 Query: 67 GDVKMETEAIDIPFEVLKVILGY-KDNKGVTFVGEDTESPEVSVLLEAP-ATGGKNAYLG 124 +VK + +IP + L ++G KD G ++VGE+T +P V+V+ E+ G+ Y+ Sbjct: 70 NEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDGLTGQPVYVA 129 Query: 125 FFKGTFSMDDIEWKSKEEKNEGLDSQKL 152 KGTFS+D IE+K++ EK E + KL Sbjct: 130 LLKGTFSLDSIEFKTRGEKAEAPEPTKL 157 >gi|8817|lcl|protein:vir:96971 Length: 213 # NCBI annotation: ORF021 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239866;genbank:gi:66395529;genbank:GeneID :5133004 Length = 213 Score = 84.0 bits (206), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 9 IGFKRMTITVLDNETNSFVIEGT--KDKGATKVAKISGLASEPVKTFGSDIAYYTSRRGV 66 +GFKR+ + V + E V T +KG T I+GLA + V F S+ + ++G Sbjct: 10 VGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNKRVWMKKQGT 69 Query: 67 GDVKMETEAIDIPFEVLKVILGY-KDNKGVTFVGEDTESPEVSVLLEAP-ATGGKNAYLG 124 +VK + +IP + L ++G KD G ++VGE+T +P V+V+ E+ G+ Y+ Sbjct: 70 NEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDGLTGQPVYVA 129 Query: 125 FFKGTFSMDDIEWKSKEEKNEGLDSQKL 152 KGTFS+D IE+K++ EK E + KL Sbjct: 130 LLKGTFSLDSIEFKTRGEKAEAPEPTKL 157 >gi|11428|lcl|protein:vir:78634 Length: 213 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429948;genbank:gi:156604002;genbank:Ge neID:5525380 Length = 213 Score = 84.0 bits (206), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 9 IGFKRMTITVLDNETNSFVIEGT--KDKGATKVAKISGLASEPVKTFGSDIAYYTSRRGV 66 +GFKR+ + V + E V T +KG T I+GLA + V F S+ + ++G Sbjct: 10 VGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNKRVWMKKQGT 69 Query: 67 GDVKMETEAIDIPFEVLKVILGY-KDNKGVTFVGEDTESPEVSVLLEAP-ATGGKNAYLG 124 +VK + +IP + L ++G KD G ++VGE+T +P V+V+ E+ G+ Y+ Sbjct: 70 NEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDGLTGQPVYVA 129 Query: 125 FFKGTFSMDDIEWKSKEEKNEGLDSQKL 152 KGTFS+D IE+K++ EK E + KL Sbjct: 130 LLKGTFSLDSIEFKTRGEKAEAPEPTKL 157 >gi|3118|lcl|protein:vir:94417 Length: 213 # NCBI annotation: ORF018 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240012;genbank:gi:66395674;genbank:GeneID :5133077 Length = 213 Score = 84.0 bits (206), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 9 IGFKRMTITVLDNETNSFVIEGT--KDKGATKVAKISGLASEPVKTFGSDIAYYTSRRGV 66 +GFKR+ + V + E V T +KG T I+GLA + V F S+ + ++G Sbjct: 10 VGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNKRVWMKKQGT 69 Query: 67 GDVKMETEAIDIPFEVLKVILGY-KDNKGVTFVGEDTESPEVSVLLEAP-ATGGKNAYLG 124 +VK + +IP + L ++G KD G ++VGE+T +P V+V+ E+ G+ Y+ Sbjct: 70 NEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDGLTGQPVYVA 129 Query: 125 FFKGTFSMDDIEWKSKEEKNEGLDSQKL 152 KGTFS+D IE+K++ EK E + KL Sbjct: 130 LLKGTFSLDSIEFKTRGEKAEAPEPTKL 157 >gi|17420|lcl|protein:vir:2690 Length: 213 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075509;genbank:gi:12719438;genbank:GeneID :920181 Length = 213 Score = 84.0 bits (206), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 9 IGFKRMTITVLDNETNSFVIEGT--KDKGATKVAKISGLASEPVKTFGSDIAYYTSRRGV 66 +GFKR+ + V + E V T +KG T I+GLA + V F S+ + ++G Sbjct: 10 VGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNKRVWMKKQGT 69 Query: 67 GDVKMETEAIDIPFEVLKVILGY-KDNKGVTFVGEDTESPEVSVLLEAP-ATGGKNAYLG 124 +VK + +IP + L ++G KD G ++VGE+T +P V+V+ E+ G+ Y+ Sbjct: 70 NEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDGLTGQPVYVA 129 Query: 125 FFKGTFSMDDIEWKSKEEKNEGLDSQKL 152 KGTFS+D IE+K++ EK E + KL Sbjct: 130 LLKGTFSLDSIEFKTRGEKAEAPEPTKL 157 >gi|19938|lcl|protein:vir:4861 Length: 203 # NCBI annotation: major tail protein # Family: family:all:1028 # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049401;genbank:gi:9632429;genbank:GeneID: 1258500 Length = 203 Score = 41.2 bits (95), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 14/137 (10%) Query: 6 MQAIGFKRMTITVLDNETNSFV--IEGTKDKGA---------TKVAKISGLASEPVKTFG 54 M +G K + + ++D +T + +EG G T+ A IS L + K G Sbjct: 1 MAIVGLKLVKLALVDPKTQQIIKGVEGLSTDGVIEIDSKMLGTRTANISNLEGQATKVPG 60 Query: 55 SDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLEAP 114 ++ G G + E ++ F++ + ILG+K +K +V + E P V+VL+E+ Sbjct: 61 NN-EVQDVMIGPGSPTVAFEFNNLDFDIKQKILGFKSDKKGGYVYQG-EKPHVAVLIESQ 118 Query: 115 ATGGKNA-YLGFFKGTF 130 KN+ Y GF G F Sbjct: 119 TLDRKNSVYFGFANGIF 135 >gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795472;genbank:gi:28876219;genbank:GeneID :1257763 Length = 203 Score = 38.9 bits (89), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 31 TKDKGA-------TKVAKISGLASEPVKTFGSDIAYYTSRRGVGDVKMETEAIDIPFEVL 83 KDKGA K AK+ + +E V D Y G+ + K+E E +D+ + Sbjct: 22 VKDKGAGIKHLPGMKSAKLD-ITNELVTVSADDGPYVVLSGGITETKLEIEVLDLTSDAR 80 Query: 84 KVILGYKDNKGVTFVGEDTESPEVSVLLEAPATGGKNAYLGFFKGTFSMDDIEWKSKE 141 K G KGV +++ + GK ++G KG F++ +E ++KE Sbjct: 81 KDFFGITVEKGVEKYNRSLTPKDIACVFRTSDENGKAIWVGLLKGKFNLPGMEAQTKE 138 >gi|13862|lcl|protein:vir:4835 Length: 203 # NCBI annotation: MPS-7201 # Family: family:all:1028 # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038332;genbank:gi:9634658;genbank:GeneID: 1262628 Length = 203 Score = 38.1 bits (87), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 18/139 (12%) Query: 6 MQAIGFKRMTITVLDNETNSF-----------VIEGTKDKGATKVAKISGLASEPVKTFG 54 M +G K + + ++D +T VIE T+ A IS L + K G Sbjct: 1 MAIVGLKLVKLALVDPKTQQIIKGEEGLSTDGVIEIDSKMLGTRTANISNLEGQATKVPG 60 Query: 55 SDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNK--GVTFVGEDTESPEVSVLLE 112 ++ G G + E ++ F++ + ILG+K +K G + G E P V+VL+E Sbjct: 61 NNTVQ-DVMIGPGSPTVAFEFNNLDFDIKQKILGFKSDKKGGYVYQG---EKPHVAVLIE 116 Query: 113 APATGGKNA-YLGFFKGTF 130 + KN+ + GF G F Sbjct: 117 SQTLDRKNSVFFGFANGIF 135 >gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690767;genbank:gi:22855007;genbank:GeneID :955222 Length = 200 Score = 37.0 bits (84), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 43/99 (43%) Query: 52 TFGSDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLL 111 TF +D + +GD+ E E D+P ++ I G G+ F D + E+++ Sbjct: 48 TFYADNGAFAQLSSLGDIDGEMEVADLPLDMQAKIFGKTVEGGIHFSSADDRTLEIALGF 107 Query: 112 EAPATGGKNAYLGFFKGTFSMDDIEWKSKEEKNEGLDSQ 150 A + G Y KG + +E K++E K +Q Sbjct: 108 RAKISTGGYRYYWALKGKPELVPVEHKTEEGKPSPQPTQ 146 >gi|6166|lcl|protein:vir:98344 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918936;genbank:gi:119443698;genbank:GeneI D:4594506 Length = 317 Score = 30.4 bits (67), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 53 FGSDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLE 112 +G D+ T+ G + ++T + +P + + G K G G P+V+++ E Sbjct: 73 YGDDMVAATAVSN-GKLSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVFE 131 Query: 113 APATGGKNAYLGFFKGTFSMDDIEWKSKEEKNE 145 + ++G FKG F+ I+ ++K++K E Sbjct: 132 RRNHDESSEWVGLFKGKFTRSSIKGQTKQDKVE 164 >gi|13181|lcl|protein:vir:81108 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429880;genbank:gi:156603933;genbank:Ge neID:5525328 Length = 317 Score = 30.4 bits (67), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 53 FGSDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLE 112 +G D+ T+ G + ++T + +P + + G K G G P+V+++ E Sbjct: 73 YGDDMVAATAVSN-GKLSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVFE 131 Query: 113 APATGGKNAYLGFFKGTFSMDDIEWKSKEEKNE 145 + ++G FKG F+ I+ ++K++K E Sbjct: 132 RRNHDESSEWVGLFKGKFTRSSIKGQTKQDKVE 164 >gi|16588|lcl|protein:vir:9416 Length: 317 # NCBI annotation: phi PVL orf 13-like protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803394;genbank:gi:29028706;genbank:GeneID :1258144 Length = 317 Score = 30.4 bits (67), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 53 FGSDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLE 112 +G D+ T+ G + ++T + +P + + G K G G P+V+++ E Sbjct: 73 YGDDMVAATAVSN-GKLSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVFE 131 Query: 113 APATGGKNAYLGFFKGTFSMDDIEWKSKEEKNE 145 + ++G FKG F+ I+ ++K++K E Sbjct: 132 RRNHDESSEWVGLFKGKFTRSSIKGQTKQDKVE 164 >gi|12529|lcl|protein:vir:80010 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430008;genbank:gi:156604063;genbank:Ge neID:5525470 Length = 317 Score = 30.4 bits (67), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 53 FGSDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLE 112 +G D+ T+ G + ++T + +P + + G K G G P+V+++ E Sbjct: 73 YGDDMVAATAVSN-GKLSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVFE 131 Query: 113 APATGGKNAYLGFFKGTFSMDDIEWKSKEEKNE 145 + ++G FKG F+ I+ ++K++K E Sbjct: 132 RRNHDESSEWVGLFKGKFTRSSIKGQTKQDKVE 164 >gi|17446|lcl|protein:vir:4606 Length: 317 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058451;genbank:gi:9635177;genbank:GeneID: 1262712 Length = 317 Score = 30.4 bits (67), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 53 FGSDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLE 112 +G D+ T+ G + ++T + +P + + G K G G P+V+++ E Sbjct: 73 YGDDMVAATAVSN-GKLSVKTTFVTVPADDKAFLNGAKKGVGGYKYGAKDIPPDVAIVFE 131 Query: 113 APATGGKNAYLGFFKGTFSMDDIEWKSKEEKNE 145 + ++G FKG F+ I+ ++K++K E Sbjct: 132 RRNHDESSEWVGLFKGKFTRSSIKGQTKQDKVE 164 >gi|4006|lcl|protein:vir:100188 Length: 210 # NCBI annotation: putative major tail protein # Family: family:all:1028 # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025036;genbank:gi:48697269;genbank:GeneID :2948286 Length = 210 Score = 30.0 bits (66), Expect = 0.020, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 30/146 (20%) Query: 6 MQAIGFKRMTITVLDNE-------TNSFVIEGTKDKGAT----KVAKISGLASEPVKTFG 54 M +G + ++DN TN +G G K A I+GL++ PVK +G Sbjct: 1 MATVGLYGIAFGLVDNNQKIIADATNGLGTDGVYQVGRADLGGKTANITGLSAAPVKIYG 60 Query: 55 SDIAYYTSRRGVGDVKMETE----AIDI---PFEVLKVILGY-KDNKGVTFVGEDTESPE 106 + V DV M T AIDI F++ + I G+ D KG +V E+ ++ Sbjct: 61 FN--------QVQDVTMPTSEPSVAIDINNLNFQIKQKIKGFVSDGKG-GYVDENLKA-H 110 Query: 107 VSVLLEAPATGGKN-AYLGFFKGTFS 131 V++L+ A ++ Y GF G + Sbjct: 111 VALLITAQTIDRQHFVYYGFGDGILT 136 >gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: putative major capsid protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285818;genbank:gi:148747739;genbank:Ge neID:5247194 Length = 195 Score = 30.0 bits (66), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 8/150 (5%) Query: 19 LDNETNSFVIEGTKDKGATKVAKISG---LASEPV---KTFGSDIAYYTSRRGVGDVKME 72 LDN +F+I+G T V KI G A EP TF +D Y S E Sbjct: 13 LDNVHIAFLIDGATPSWETPV-KIPGAVRFAPEPQGEESTFYADNGPYFSYTSNNGYTAE 71 Query: 73 TEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLEAPATGGKNAYLGFFKGTFSM 132 E ++P ++L +LG++ + V +P+ LL KN +++ S Sbjct: 72 LEMANLPDDILAEMLGWEIDANGMLVETTDGTPKEFALLGQILGDKKNRRFVYYRCKASR 131 Query: 133 DDIEWKSKEEKNEGLDSQKLVFTAQPGDKG 162 E ++ E E +Q L T P + G Sbjct: 132 PTAEHNTRGESVEP-TTQTLNITILPIEIG 160 >gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612840;genbank:gi:20065974;genbank:GeneID :935777 Length = 198 Score = 24.6 bits (52), Expect = 0.75, Method: Compositional matrix adjust. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Query: 74 EAIDIPFEVLK-------VILGYKDNKGVTFVGEDTESPEVSVLLEAPATGGKNAYLGFF 126 ++I+I F+V K ++ G G D ++ EV++ A T GK ++ ++ Sbjct: 67 DSIEIEFDVNKLSPEQKAILRGATYEDGFLINNVDDQAKEVAIGWRARQTNGKYEFVWYY 126 Query: 127 KGTFS 131 G F+ Sbjct: 127 CGKFN 131 >gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680492;swissprot:trembl:p94216;genbank:gi :22296532;interpro:IPR006490;uniprot:P94216;genbank:Gene ID:951722 Length = 202 Score = 24.3 bits (51), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/84 (21%), Positives = 33/84 (39%) Query: 56 DIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDTESPEVSVLLEAPA 115 D Y G+ + E D+ + + G K GV ++ + L Sbjct: 58 DGPYLILSGGITEATETIEMYDVDSVMKSDLFGIKVVNGVEVYPKNLSPNYAATLFRTKL 117 Query: 116 TGGKNAYLGFFKGTFSMDDIEWKS 139 + GK ++G KG FS+ ++ K+ Sbjct: 118 SNGKYVWVGMLKGMFSLPGVDTKT 141 >gi|12298|lcl|protein:vir:79536 Length: 247 # NCBI annotation: putative major tail subunit # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272523;genbank:gi:148609392;genbank:Ge neID:5204372 Length = 247 Score = 22.7 bits (47), Expect = 3.2, Method: Compositional matrix adjust. Identities = 8/33 (24%), Positives = 16/33 (48%) Query: 133 DDIEWKSKEEKNEGLDSQKLVFTAQPGDKGEAK 165 +D +WK+ + + + +PGD G+ K Sbjct: 63 EDADWKTTTQGQKSVGDTSATLAWRPGDSGQKK 95 >gi|3569|lcl|protein:vir:101656 Length: 324 # NCBI annotation: gp19 # Family: family:all:1912 # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654774;genbank:gi:109302772;genbank:GeneI D:4156090 Length = 324 Score = 21.9 bits (45), Expect = 5.4, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 10/76 (13%) Query: 49 PVKTFGSDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDT--ESPE 106 PV T G+D V V E + + PF T VGE E E Sbjct: 233 PVATLGTD--------EVTIVLQEPVSPNTPFTYTVSQTSGGTTTAATLVGEPVTDEDGE 284 Query: 107 VSVLLEAPATGGKNAY 122 V++ +EAPAT G + Sbjct: 285 VTITVEAPATSGSYTF 300 >gi|19394|lcl|protein:vir:7861 Length: 324 # NCBI annotation: gp18 # Family: family:all:1912 # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817468;genbank:gi:29565897;genbank:GeneID :1259090 Length = 324 Score = 21.9 bits (45), Expect = 5.4, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 10/76 (13%) Query: 49 PVKTFGSDIAYYTSRRGVGDVKMETEAIDIPFEVLKVILGYKDNKGVTFVGEDT--ESPE 106 PV T G+D V V E + + PF T VGE E E Sbjct: 233 PVATLGTD--------EVTIVLQEPVSPNTPFTYTVSQTSGGTTTAATLVGEPVTDEDGE 284 Query: 107 VSVLLEAPATGGKNAY 122 V++ +EAPAT G + Sbjct: 285 VTITVEAPATSGSYTF 300 >gi|15908|lcl|protein:vir:3418 Length: 641 # NCBI annotation: DNA packaging protein # Family: family:all:140 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040581;genbank:gi:9626245;genbank:GeneID: 2703524 Length = 641 Score = 21.9 bits (45), Expect = 5.9, Method: Compositional matrix adjust. Identities = 8/15 (53%), Positives = 10/15 (66%) Query: 135 IEWKSKEEKNEGLDS 149 I W SK+ +NE LD Sbjct: 576 ILWDSKKRRNEALDC 590 >gi|17272|lcl|protein:vir:387 Length: 640 # NCBI annotation: gp2 # Family: family:all:140 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046897;genbank:gi:9630466;genbank:GeneID: 1261641 Length = 640 Score = 21.6 bits (44), Expect = 6.9, Method: Composition-based stats. Identities = 8/14 (57%), Positives = 10/14 (71%) Query: 135 IEWKSKEEKNEGLD 148 I W SK+ +NE LD Sbjct: 576 IIWDSKKRRNEALD 589 >gi|5218|lcl|protein:vir:106658 Length: 217 # NCBI annotation: ORF022 # Family: family:all:464 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239499;genbank:gi:66395237;genbank:GeneID :4555812 Length = 217 Score = 21.2 bits (43), Expect = 8.8, Method: Compositional matrix adjust. Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 168 YVGWAFDEETEGKGTNAQQLKA 189 Y W + + +GKG N + KA Sbjct: 85 YEAWEIESKVQGKGKNEGKFKA 106 >gi|19556|lcl|protein:vir:10337 Length: 167 # NCBI annotation: ORF40 # Family: family:all:129 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758932;genbank:gi:27311208;genbank:GeneID :956127 Length = 167 Score = 21.2 bits (43), Expect = 9.1, Method: Compositional matrix adjust. Identities = 13/48 (27%), Positives = 25/48 (52%) Query: 81 EVLKVILGYKDNKGVTFVGEDTESPEVSVLLEAPATGGKNAYLGFFKG 128 +V++ + + D KG V E+ P++++ E GG +A L +G Sbjct: 4 QVIRAMNLFADGKGYAGVVEEVTPPKLTLKTEEFKAGGMDAPLELDQG 51 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.310 0.131 0.365 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,592 Number of Sequences: 514 Number of extensions: 4453 Number of successful extensions: 51 Number of sequences better than 100.0: 37 Number of HSP's better than 100.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 37 length of query: 196 length of database: 206,069 effective HSP length: 67 effective length of query: 129 effective length of database: 171,631 effective search space: 22140399 effective search space used: 22140399 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 35 (18.1 bits)