BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:103919|NCBI_annot:major tail protein|genbank:acc:YP_873998;genbank:gi:118430773;genbank:GeneID:4525 411 (193 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|9840|lcl|protein:vir:103919 Length: 193 # NCBI annotation: ma... 396 e-113 gi|7311|lcl|protein:vir:96224 Length: 193 # NCBI annotation: ORF... 396 e-113 gi|2790|lcl|protein:vir:99775 Length: 193 # NCBI annotation: hyp... 395 e-112 gi|9299|lcl|protein:vir:97120 Length: 193 # NCBI annotation: ORF... 394 e-112 gi|7654|lcl|protein:vir:96352 Length: 193 # NCBI annotation: ORF... 390 e-111 gi|11600|lcl|protein:vir:78825 Length: 193 # NCBI annotation: ma... 390 e-111 gi|17700|lcl|protein:vir:9314 Length: 193 # NCBI annotation: str... 384 e-109 gi|5218|lcl|protein:vir:106658 Length: 217 # NCBI annotation: OR... 225 3e-61 gi|302|lcl|protein:vir:3619 Length: 169 # NCBI annotation: MTP #... 72 4e-15 gi|16791|lcl|protein:vir:2742 Length: 168 # NCBI annotation: put... 72 4e-15 gi|13703|lcl|protein:vir:4908 Length: 168 # NCBI annotation: gp1... 71 8e-15 gi|15505|lcl|protein:vir:745 Length: 165 # NCBI annotation: unkn... 70 1e-14 gi|13644|lcl|protein:vir:3973 Length: 165 # NCBI annotation: maj... 70 1e-14 gi|8026|lcl|protein:vir:96484 Length: 169 # NCBI annotation: tai... 70 2e-14 gi|6106|lcl|protein:vir:95799 Length: 180 # NCBI annotation: maj... 44 2e-06 gi|5332|lcl|protein:vir:99519 Length: 189 # NCBI annotation: put... 36 3e-04 gi|3336|lcl|protein:vir:94505 Length: 199 # NCBI annotation: maj... 28 0.086 gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hyp... 26 0.35 gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: put... 24 1.5 gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hy... 23 3.4 gi|10070|lcl|protein:vir:99006 Length: 303 # NCBI annotation: gp... 22 5.5 >gi|9840|lcl|protein:vir:103919 Length: 193 # NCBI annotation: major tail protein # Family: family:all:464 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873998;genbank:gi:118430773;genbank:GeneI D:4525411 Length = 193 Score = 396 bits (1018), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM Sbjct: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 Query: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK Sbjct: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 Query: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ Sbjct: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 Query: 181 PKVDSSTVTPGEV 193 PKVDSSTVTPGEV Sbjct: 181 PKVDSSTVTPGEV 193 >gi|7311|lcl|protein:vir:96224 Length: 193 # NCBI annotation: ORF023 # Family: family:all:464 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239576;genbank:gi:66395315;genbank:GeneID :5132772 Length = 193 Score = 396 bits (1018), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM Sbjct: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 Query: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK Sbjct: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 Query: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ Sbjct: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 Query: 181 PKVDSSTVTPGEV 193 PKVDSSTVTPGEV Sbjct: 181 PKVDSSTVTPGEV 193 >gi|2790|lcl|protein:vir:99775 Length: 193 # NCBI annotation: hypothetical protein # Family: family:all:464 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004313;genbank:gi:122891767;genbank:Ge neID:4712330 Length = 193 Score = 395 bits (1014), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/193 (99%), Positives = 193/193 (100%) Query: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM Sbjct: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 Query: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK Sbjct: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 Query: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 AEANGIDEYEYEYGVNGRFQRGFATLP+AVTKKLKATGYRFHDTTKADALTGEDLTAIPQ Sbjct: 121 AEANGIDEYEYEYGVNGRFQRGFATLPDAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 Query: 181 PKVDSSTVTPGEV 193 PKVDSSTVTPGEV Sbjct: 181 PKVDSSTVTPGEV 193 >gi|9299|lcl|protein:vir:97120 Length: 193 # NCBI annotation: ORF025 # Family: family:all:464 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239731;genbank:gi:66394894;genbank:GeneID :5130853 Length = 193 Score = 394 bits (1011), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/193 (98%), Positives = 192/193 (99%) Query: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM Sbjct: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 Query: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGD+ KFKAKYFQGFHNKFELK Sbjct: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDSAKFKAKYFQGFHNKFELK 120 Query: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ Sbjct: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 Query: 181 PKVDSSTVTPGEV 193 PKVDSSTVTPGEV Sbjct: 181 PKVDSSTVTPGEV 193 >gi|7654|lcl|protein:vir:96352 Length: 193 # NCBI annotation: ORF025 # Family: family:all:464 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239653;genbank:gi:66395394;genbank:GeneID :5132828 Length = 193 Score = 390 bits (1001), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/193 (97%), Positives = 190/193 (98%) Query: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM Sbjct: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 Query: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGD+ KFKAKYFQGFHNKFELK Sbjct: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDSAKFKAKYFQGFHNKFELK 120 Query: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTK DALT EDLTAIPQ Sbjct: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKEDALTSEDLTAIPQ 180 Query: 181 PKVDSSTVTPGEV 193 PKVDSSTVTPGEV Sbjct: 181 PKVDSSTVTPGEV 193 >gi|11600|lcl|protein:vir:78825 Length: 193 # NCBI annotation: major tail protein # Family: family:all:464 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285367;genbank:gi:148717895;genbank:Ge neID:5246956 Length = 193 Score = 390 bits (1001), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/193 (97%), Positives = 190/193 (98%) Query: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM Sbjct: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 Query: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGD+ KFKAKYFQGFHNKFELK Sbjct: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDSAKFKAKYFQGFHNKFELK 120 Query: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTK DALT EDLTAIPQ Sbjct: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKEDALTSEDLTAIPQ 180 Query: 181 PKVDSSTVTPGEV 193 PKVDSSTVTPGEV Sbjct: 181 PKVDSSTVTPGEV 193 >gi|17700|lcl|protein:vir:9314 Length: 193 # NCBI annotation: structural phi Mu50B # Family: family:all:464 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803292;genbank:gi:29028602;genbank:GeneID :1258050 Length = 193 Score = 384 bits (987), Expect = e-109, Method: Compositional matrix adjust. Identities = 187/193 (96%), Positives = 188/193 (97%) Query: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM Sbjct: 1 MANMKNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTM 60 Query: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELK 120 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGD+ KFKAKYFQGFHNKFELK Sbjct: 61 SGTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDSAKFKAKYFQGFHNKFELK 120 Query: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ Sbjct: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQ 180 Query: 181 PKVDSSTVTPGEV 193 PKVDS V P EV Sbjct: 181 PKVDSPPVAPREV 193 >gi|5218|lcl|protein:vir:106658 Length: 217 # NCBI annotation: ORF022 # Family: family:all:464 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239499;genbank:gi:66395237;genbank:GeneID :4555812 Length = 217 Score = 225 bits (573), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 110/181 (60%), Positives = 138/181 (76%), Gaps = 1/181 (0%) Query: 5 KNSNDRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSGTA 64 K+S DR+ LFR AG+KVDA KM+FLTEY +S EAD++ EDTMD SY+TGGS+E+T+S TA Sbjct: 4 KDSKDRLFLFRIAGQKVDAKKMMFLTEYSVSLEADSENEDTMDDSYSTGGSLENTISATA 63 Query: 65 KMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELKAEAN 124 KM Y D FADE+EDAV D ++YEAWE+ES++ GK + KFKAKY+QG KFE K E Sbjct: 64 KMDYRDSFADEVEDAVRDGIIYEAWEIESKVQGKGKNEGKFKAKYYQGKFKKFESKGEVK 123 Query: 125 GIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQPKVD 184 G+DEYE E+ V G++QRGFAT+PE + KL+ GYRFH+TTK D T E IPQP VD Sbjct: 124 GVDEYETEFNVFGKYQRGFATIPETIKTKLELAGYRFHNTTKDDPAT-EVTQNIPQPTVD 182 Query: 185 S 185 + Sbjct: 183 T 183 >gi|302|lcl|protein:vir:3619 Length: 169 # NCBI annotation: MTP # Family: family:all:464 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112705;genbank:gi:13786573;genbank:GeneID :921036 Length = 169 Score = 72.4 bits (176), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 5 KNSNDRIILFR---KAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMS 61 K D I+L+R KA + A K+ F TE+ D +T T DG VE ++S Sbjct: 7 KQGKDIILLYRVLSKASTEA-AWKLAFQTEHSNEKTRDYNTTATKDGPVGALAEVEYSLS 65 Query: 62 GTAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNG-DATKFKAKYFQGFHNKFELK 120 T+ GD DE++ A D + E WE++ G D+ K+KAKY + + F + Sbjct: 66 ATSIAANGDPHLDEMDKAFDDAAIIEVWEIDKAEKATLGLDSGKYKAKYLRAYLTSFSYE 125 Query: 121 AEANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTK 166 + E E+GV G+ Q+G+ATL T++ Y F DT + Sbjct: 126 PNSEDALELSLEFGVFGKPQKGYATL---TTEQANVVQYVFKDTVR 168 >gi|16791|lcl|protein:vir:2742 Length: 168 # NCBI annotation: putative structural protein # Family: family:all:464 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695115;genbank:gi:23455884;genbank:GeneID :955649 Length = 168 Score = 72.0 bits (175), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 7/157 (4%) Query: 9 DRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSGTAKMFY 68 D+I++FRK G+K A K+ TE+ + D D+ T DG+ G +E+ +S +A + Sbjct: 12 DKILMFRKLGDKTAAAKLALQTEHEWEYSRDADSTKTKDGAVVADGGLETKLSISA-IGT 70 Query: 69 GDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELKAEANGIDE 128 DD + ++ +VVD E WE++ + K D K+ A Y G + +++ A + E Sbjct: 71 KDDLNEMLKKSVVDGYKVEVWEID--LADKKSDG-KYGALYAIGRLSNWKVPANVEDLVE 127 Query: 129 YEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTT 165 E E + G+ Q G ATL + ++K Y F DTT Sbjct: 128 IESELTIEGKPQAGEATL---TSDQIKEIQYTFQDTT 161 >gi|13703|lcl|protein:vir:4908 Length: 168 # NCBI annotation: gp168 # Family: family:all:464 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056686;genbank:gi:9635021;genbank:GeneID: 1262686 Length = 168 Score = 71.2 bits (173), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 9 DRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSGTAKMFY 68 D+I++FRK G+K A K+ TE+ + D D+ T DG+ G +E+ +S +A + Sbjct: 12 DKILMFRKLGDKTAARKLALQTEHEWEYSRDADSTKTKDGAVVADGGLETKLSISA-IGT 70 Query: 69 GDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELKAEANGIDE 128 DD + ++++VVD E WE++ G K+ A Y G + +++ A + E Sbjct: 71 KDDLNEMLKNSVVDGYKVEVWEIDLADKKSGG---KYGALYAIGRLSNWKVPANVEDLVE 127 Query: 129 YEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTG 172 E E + G+ Q G ATL + ++K Y F DTT + G Sbjct: 128 IESELTIEGKPQAGEATL---TSDQIKEIQYTFQDTTTPAGIGG 168 >gi|15505|lcl|protein:vir:745 Length: 165 # NCBI annotation: unknown # Family: family:all:464 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108722;genbank:gi:13487844;genbank:GeneID :920880 Length = 165 Score = 70.5 bits (171), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 5 KNSNDRIILFR--KAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSG 62 K D I+L+R K A K+ F TE+ D +T T DG+ + ++E ++S Sbjct: 7 KQGKDIILLYRLLSKATKEAAWKLAFQTEHSNEKTRDYNTTATKDGTIGSLAAIEYSLSA 66 Query: 63 TAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELKAE 122 T+ GD DE++ A D + E WE++ G +G K+KAKY + + F + Sbjct: 67 TSIAANGDPHLDEMDKAFDDGEIIEVWEIDKAEKGSDG---KYKAKYLRAYLTSFSYEPN 123 Query: 123 ANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTT 165 + E E+GV G+ Q+G ATL E ++ Y F DT Sbjct: 124 SEDALELSLEFGVFGKPQKGQATLTE---EQANVVQYVFKDTV 163 >gi|13644|lcl|protein:vir:3973 Length: 165 # NCBI annotation: major tail protein # Family: family:all:464 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663681;genbank:gi:21716118;genbank:GeneID :951213 Length = 165 Score = 70.5 bits (171), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 5 KNSNDRIILFR--KAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSG 62 K D I+L+R K A K+ F TE+ D +T T DG+ + ++E ++S Sbjct: 7 KQGKDIILLYRLLSKATKEAAWKLAFQTEHSNEKTRDYNTTATKDGTIGSLAAIEYSLSA 66 Query: 63 TAKMFYGDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELKAE 122 T+ GD DE++ A D + E WE++ G +G K+KAKY + + F + Sbjct: 67 TSIAANGDPHLDEMDKAFDDGEIIEVWEIDKAEKGSDG---KYKAKYLRAYLTSFSYEPN 123 Query: 123 ANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTT 165 + E E+GV G+ Q+G ATL E ++ Y F DT Sbjct: 124 SEDALELSLEFGVFGKPQKGQATLTE---EQANVVQYVFKDTV 163 >gi|8026|lcl|protein:vir:96484 Length: 169 # NCBI annotation: tail protein # Family: family:all:464 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238498;genbank:gi:66391774;genbank:GeneID :5176906 Length = 169 Score = 69.7 bits (169), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 7/162 (4%) Query: 9 DRIILFRKAGEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSGTAKMFY 68 D+I++FRK G+K A K+ TE+ + D D+ T DG+ G +E+ +S A + Sbjct: 13 DKILMFRKFGDKKAAAKLALQTEHEWEYSRDADSTKTKDGAVVADGGLETKLSINA-IGT 71 Query: 69 GDDFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELKAEANGIDE 128 DD + ++ +VVD E WE++ NG K+ A Y G + +++ A + E Sbjct: 72 KDDLNEMLKKSVVDGYKVEVWEIDLADKKSNG---KYGALYAIGRLSNWKVPANVEDLVE 128 Query: 129 YEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADAL 170 E E + G+ Q G ATL +++K Y F DTT L Sbjct: 129 IESELIIEGKPQAGEATL---TGEQIKEIQYTFQDTTVPSGL 167 >gi|6106|lcl|protein:vir:95799 Length: 180 # NCBI annotation: major tail protein # Family: family:all:464 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950595;genbank:gi:119953790;genbank:GeneI D:5076869 Length = 180 Score = 43.5 bits (101), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 6/170 (3%) Query: 9 DRIILFRKA--GEKVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSGTAKM 66 D ++ FR+ +K DA K+ F E+ ++ E + +T T DG N+ E++ T+ Sbjct: 8 DLVVFFRRVIDQKKQDAGKVRFQVEHTINSEKEVETTITKDGVVNSITDGETSGDFTSLA 67 Query: 67 FYGD----DFADEIEDAVVDRVLYEAWEVESRIPGKNGDATKFKAKYFQGFHNKFELKAE 122 + + + E+ + + E W+V+ ++ + Y+QG+ FE+ A Sbjct: 68 YRENVDTVNMWHEMRKWYLAKDKVEVWQVDLGSKRQHEGKEVYDVDYYQGYFKNFEISAP 127 Query: 123 ANGIDEYEYEYGVNGRFQRGFATLPEAVTKKLKATGYRFHDTTKADALTG 172 ++ E YE ++G + +L ++A Y +H K ++G Sbjct: 128 SDDKVELSYEMTMDGNGVQAVDSLTATQKAAVEAAQYDYHTLAKETEVSG 177 >gi|5332|lcl|protein:vir:99519 Length: 189 # NCBI annotation: putative protein # Family: family:all:464 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958543;genbank:gi:41179325;genbank:GeneID :2717157 Length = 189 Score = 36.2 bits (82), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/148 (20%), Positives = 64/148 (43%), Gaps = 22/148 (14%) Query: 10 RIILFRKAGE--KVDATKMLFLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSGTAKMF 67 ++++F+ A + K +AT++ T + + T +T DG+ N G + +T+ Sbjct: 10 KVLMFKLAKDRDKKNATRLALETTHTIKEAGKVATTETKDGTVNNPGEITTTI------- 62 Query: 68 YGDDFADEIEDAVVDRVLY---------EAWEVESRIPGKNGDATKFKAKYFQGFHNKFE 118 D D+ R+L+ + WE+ P + K+ A+Y G+ + +E Sbjct: 63 ---DIEALASDSPTYRLLHYAAKHSELVDCWEINFDKPSPDSKG-KYLAQYGSGYLSSWE 118 Query: 119 LKAEANGIDEYEYEYGVNGRFQRGFATL 146 + + + V+G+ G+AT+ Sbjct: 119 TPDKVGDNETIKTTLNVDGKLVSGYATV 146 >gi|3336|lcl|protein:vir:94505 Length: 199 # NCBI annotation: major tail protein # Family: family:all:1095 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223895;genbank:gi:62327107;genbank:GeneID :5075521 Length = 199 Score = 28.1 bits (61), Expect = 0.086, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 3/124 (2%) Query: 35 SHEADTDTEDTMDGSYNTGGSVESTMSGTAKMFYGDDFADEIEDAVVDRVLYEAWE--VE 92 S E D+ E T G + E ++ T+ M GD+ D I A D + W V+ Sbjct: 48 SIEGDSLDEQTKMGRIVAPSTNEDSIEVTSYMVPGDEATDAIIKAKHDGKQIKVWRVIVD 107 Query: 93 SRIPGKNGDATKFKAKYFQGFHNKFELKAEANGIDEYEYEYGVNGRFQRGFATLPEAVTK 152 R+ D + + A + G + ++ E + E ++ + G+ G L +A + Sbjct: 108 KRLAVTEDDHSAYPAMFGYGIVDSADISDE-DSFSEIDWTINILGKLVDGTFPLTDAEVQ 166 Query: 153 KLKA 156 L+A Sbjct: 167 SLQA 170 >gi|18101|lcl|protein:vir:5980 Length: 177 # NCBI annotation: hypothetical protein # Family: family:all:1095 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690680;genbank:geneid:6329148;genbank:gi: 22855074;interpro:IPR009341;interpro:IPR011855;uniprot:O 48449;genbank:GeneID:955320 Length = 177 Score = 25.8 bits (55), Expect = 0.35, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 60/155 (38%), Gaps = 9/155 (5%) Query: 28 FLTEYGLSHEADTDTEDTMDGSYNTGGSVESTMSGTAKMFYGDDFADEIEDAVVDRVLYE 87 + T+ +S E + E T +G GSV + T GD IEDA + + Sbjct: 31 YQTDGSVSGERELFDEQTKNGRILGPGSVADSGEVTYYGKRGDAGQKAIEDAYQNGKQIK 90 Query: 88 AWEVESRIPGKNGDATKFKAKYFQGFHNKFELKAEANGIDEYEYEYGVNGRFQRG-FATL 146 W V++ KN + K+ A++ + E G E V G + G TL Sbjct: 91 FWRVDTV---KN-ENDKYDAQFGFAYIESREYSDGVEGAVEISISLQVIGELKNGEIDTL 146 Query: 147 PEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQP 181 PE + K GY F + TGE +P P Sbjct: 147 PEEIVNVSKG-GYDFQQPGQT---TGEAPGTVPAP 177 >gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: putative terminase large subunit TerL # Family: family:all:144 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852753;genbank:gi:31544028;interpro:IPR00 4921;interpro:IPR006517;uniprot:Q7Y5U7;genbank:GeneID:27 53564 Length = 487 Score = 23.9 bits (50), Expect = 1.5, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 127 DEYEYEYGVNGRFQRGFATLPEA 149 D+Y GV G + G+ LPE+ Sbjct: 419 DKYTRVLGVQGYIESGYVMLPES 441 >gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425610;genbank:gi:155042943;genbank:Ge neID:5469578 Length = 193 Score = 22.7 bits (47), Expect = 3.4, Method: Compositional matrix adjust. Identities = 6/20 (30%), Positives = 12/20 (60%) Query: 81 VDRVLYEAWEVESRIPGKNG 100 +D+ LY++W + + G G Sbjct: 173 IDQALYDSWYTQVHVKGSTG 192 >gi|10070|lcl|protein:vir:99006 Length: 303 # NCBI annotation: gp35 # Family: family:all:698 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655900;genbank:gi:109521472;genbank:GeneI D:4157971 Length = 303 Score = 21.9 bits (45), Expect = 5.5, Method: Compositional matrix adjust. Identities = 12/45 (26%), Positives = 17/45 (37%) Query: 142 GFATLPEAVTKKLKATGYRFHDTTKADALTGEDLTAIPQPKVDSS 186 GF PEA+ DT + + L + P K +SS Sbjct: 214 GFVAPPEAIVVSPDPITISVSDTEQLEVLADNGINRTPNAKFESS 258 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.312 0.131 0.372 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,061 Number of Sequences: 514 Number of extensions: 4972 Number of successful extensions: 37 Number of sequences better than 100.0: 30 Number of HSP's better than 100.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 30 length of query: 193 length of database: 206,069 effective HSP length: 67 effective length of query: 126 effective length of database: 171,631 effective search space: 21625506 effective search space used: 21625506 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 35 (18.1 bits)