BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:95370|NCBI_annot:major tail protein|genbank:acc:YP_764482;genbank:gi:115334636;genbank:GeneID:5179 257 (194 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|5735|lcl|protein:vir:95370 Length: 194 # NCBI annotation: maj... 400 e-114 gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hy... 383 e-109 gi|17556|lcl|protein:vir:968 Length: 202 # NCBI annotation: Orf5... 175 3e-46 gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: pu... 147 1e-37 gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hyp... 76 3e-16 gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hyp... 54 2e-09 gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: pu... 43 2e-06 gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: ma... 43 2e-06 gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: ma... 43 2e-06 gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: ma... 43 2e-06 gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: maj... 40 3e-05 gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: ph... 35 8e-04 gi|1682|lcl|protein:vir:100637 Length: 214 # NCBI annotation: 77... 21 9.3 >gi|5735|lcl|protein:vir:95370 Length: 194 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764482;genbank:gi:115334636;genbank:GeneI D:5179257 Length = 194 Score = 400 bits (1029), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/194 (100%), Positives = 194/194 (100%) Query: 1 MTAPSTNKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDS 60 MTAPSTNKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDS Sbjct: 1 MTAPSTNKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDS 60 Query: 61 AYYSEATNNGYDGELEVANLTDEFRIDVLGDTYENGVMYENADQVTKPFALLFEFQGDKK 120 AYYSEATNNGYDGELEVANLTDEFRIDVLGDTYENGVMYENADQVTKPFALLFEFQGDKK Sbjct: 61 AYYSEATNNGYDGELEVANLTDEFRIDVLGDTYENGVMYENADQVTKPFALLFEFQGDKK 120 Query: 121 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS 180 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS Sbjct: 121 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS 180 Query: 181 WYTQVHVKGATTGA 194 WYTQVHVKGATTGA Sbjct: 181 WYTQVHVKGATTGA 194 >gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425610;genbank:gi:155042943;genbank:Ge neID:5469578 Length = 193 Score = 383 bits (984), Expect = e-109, Method: Compositional matrix adjust. Identities = 183/191 (95%), Positives = 188/191 (98%) Query: 1 MTAPSTNKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDS 60 MT P++NKIKYGLRNVHYAVITEDP TGAITYGTPKRIPGAVSL+LEPAGETFDFYADDS Sbjct: 1 MTVPTSNKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDS 60 Query: 61 AYYSEATNNGYDGELEVANLTDEFRIDVLGDTYENGVMYENADQVTKPFALLFEFQGDKK 120 AYYSEATNNGYDGELE+ANLTDEFRIDVLGDTY NGVMYENADQVTKPFALLFEFQGDKK Sbjct: 61 AYYSEATNNGYDGELELANLTDEFRIDVLGDTYVNGVMYENADQVTKPFALLFEFQGDKK 120 Query: 121 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS 180 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS Sbjct: 121 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS 180 Query: 181 WYTQVHVKGAT 191 WYTQVHVKG+T Sbjct: 181 WYTQVHVKGST 191 >gi|17556|lcl|protein:vir:968 Length: 202 # NCBI annotation: Orf50 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076622;genbank:gi:13095730;genbank:GeneID :920287 Length = 202 Score = 175 bits (443), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 86/190 (45%), Positives = 121/190 (63%), Gaps = 1/190 (0%) Query: 1 MTAPSTNKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDS 60 M NK+++GL NV++A T D ++GA TY P R PGAV L+LE +G+ F AD+ Sbjct: 1 MGQQEKNKVEFGLENVYFARATTDLLSGATTYEKPIRWPGAVELSLEASGDLIKFKADNI 60 Query: 61 AYYSEATNNGYDGELEVANLTDEFRIDVLGDTYENGVMYENADQVTKPFALLFEFQGDKK 120 YY N GYDG+L A + +EF +LG+ E GV E ++ T PFAL+F+F+GDKK Sbjct: 61 DYYISGNNQGYDGKLTTALVPEEFATKILGEVVEGGVQTEYSNVETSPFALMFQFEGDKK 120 Query: 121 AKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDS 180 A RHVLY C ASRP+V G + + +P T+ L+F+A PRP K VK T P+ + +YD+ Sbjct: 121 ATRHVLYNCSASRPSV-GSSTIDKGDPNTTELSFSASPRPSDKAVKTKTRPDTEPTVYDA 179 Query: 181 WYTQVHVKGA 190 W+ V+ K + Sbjct: 180 WFNSVYDKNS 189 >gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: putative major capsid protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285818;genbank:gi:148747739;genbank:Ge neID:5247194 Length = 195 Score = 147 bits (370), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 115/199 (57%), Gaps = 9/199 (4%) Query: 1 MTAPSTNKIKYGLRNVHYAVITEDPVTGAI-TYGTPKRIPGAVSLTLEPAGETFDFYADD 59 M S NK+ +GL NVH A + + GA ++ TP +IPGAV EP GE FYAD+ Sbjct: 1 MNKMSQNKVTFGLDNVHIAFL----IDGATPSWETPVKIPGAVRFAPEPQGEESTFYADN 56 Query: 60 SAYYSEATNNGYDGELEVANLTDEFRIDVLG-DTYENGVMYENADQVTKPFALLFEFQGD 118 Y+S +NNGY ELE+ANL D+ ++LG + NG++ E D K FALL + GD Sbjct: 57 GPYFSYTSNNGYTAELEMANLPDDILAEMLGWEIDANGMLVETTDGTPKEFALLGQILGD 116 Query: 119 KKAKRHVLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEI---DQ 175 KK +R V Y CKASRPT T+ E+ EP T TLN T P + E+ +Q Sbjct: 117 KKNRRFVYYRCKASRPTAEHNTRGESVEPTTQTLNITILPIEIGGKNVVRGVLELNDTNQ 176 Query: 176 ALYDSWYTQVHVKGATTGA 194 A+YD++++ V V GAT G Sbjct: 177 AIYDNFFSTVTVPGATAGV 195 >gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690767;genbank:gi:22855007;genbank:GeneID :955222 Length = 200 Score = 75.9 bits (185), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 15/194 (7%) Query: 7 NKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEA 66 K+ GL H A + +D + + P+ +PGAVS+ L+P ET FYAD+ A+ + Sbjct: 2 GKVLSGLDMFHIAEVLKD-TKDELEFSVPEELPGAVSMKLDPKSETETFYADNGAFAQLS 60 Query: 67 TNNGYDGELEVANLTDEFRIDVLGDTYENGVMYENADQVTKPFALLFEFQGDKKAKRHVL 126 + DGE+EVA+L + + + G T E G+ + +AD T AL F + R+ Sbjct: 61 SLGDIDGEMEVADLPLDMQAKIFGKTVEGGIHFSSADDRTLEIALGFRAKISTGGYRY-- 118 Query: 127 YYCKASRPT---VAGQTKAENTEPQTSTLNFTARPRPDTK------EVKADTTPEIDQAL 177 Y+ +P V +T+ PQ + + P + K E KA+ I+ Sbjct: 119 YWALKGKPELVPVEHKTEEGKPSPQPTQVKIKFSPLTNLKKGKKRWEAKAEEGNGINA-- 176 Query: 178 YDSWYTQVHVKGAT 191 ++W+ QV K T Sbjct: 177 -ETWFKQVVYKDIT 189 >gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795472;genbank:gi:28876219;genbank:GeneID :1257763 Length = 203 Score = 53.5 bits (127), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 71/159 (44%), Gaps = 9/159 (5%) Query: 7 NKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEA 66 K+K+GLR+ +Y V+ + + G K +PG S L+ E ADD Y Sbjct: 2 GKVKFGLRDFYYGVLDDKDMVKDKGAGI-KHLPGMKSAKLDITNELVTVSADDGPYV--V 58 Query: 67 TNNGY---DGELEVANLTDEFRIDVLGDTYENGVMYENADQVTKPFALLFEFQGDK-KAK 122 + G E+EV +LT + R D G T E GV N K A +F + KA Sbjct: 59 LSGGITETKLEIEVLDLTSDARKDFFGITVEKGVEKYNRSLTPKDIACVFRTSDENGKAI 118 Query: 123 RHVLYYCKASRPTVAGQTK--AENTEPQTSTLNFTARPR 159 L K + P + QTK A + +P + T NF AR + Sbjct: 119 WVGLLKGKFNLPGMEAQTKEGAPDPKPDSVTGNFVARGK 157 >gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459974;genbank:gi:85701389;genbank:GeneID :3882150 Length = 202 Score = 43.1 bits (100), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 6/185 (3%) Query: 12 GLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEATNNGY 71 G+ N+ YA + +D + AI Y K++ GAV + L + ++D+ ++ Sbjct: 13 GVDNLVYAKVLQDD-SSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 Query: 72 DGELEVANLTDEFRIDVLG-DTYENGVMYENADQVTKPFALLFEFQGDKKAKRHV-LYYC 129 + E+EV L+ + D+ G ++GV+ E + A+ F F R+V L Sbjct: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 Query: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 Query: 187 VKGAT 191 K T Sbjct: 192 EKPVT 196 >gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338193;genbank:gi:77020189;genbank:GeneID :3703750 Length = 202 Score = 43.1 bits (100), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 6/185 (3%) Query: 12 GLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEATNNGY 71 G+ N+ YA + +D + AI Y K++ GAV + L + ++D+ ++ Sbjct: 13 GVDNLVYAKVLQDD-SSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 Query: 72 DGELEVANLTDEFRIDVLG-DTYENGVMYENADQVTKPFALLFEFQGDKKAKRHV-LYYC 129 + E+EV L+ + D+ G ++GV+ E + A+ F F R+V L Sbjct: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 Query: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 Query: 187 VKGAT 191 K T Sbjct: 192 EKPVT 196 >gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338142;genbank:gi:77020241;genbank:GeneID :3703754 Length = 202 Score = 43.1 bits (100), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 6/185 (3%) Query: 12 GLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEATNNGY 71 G+ N+ YA + +D + AI Y K++ GAV + L + ++D+ ++ Sbjct: 13 GVDNLVYAKVLQDD-SSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 Query: 72 DGELEVANLTDEFRIDVLG-DTYENGVMYENADQVTKPFALLFEFQGDKKAKRHV-LYYC 129 + E+EV L+ + D+ G ++GV+ E + A+ F F R+V L Sbjct: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 Query: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 Query: 187 VKGAT 191 K T Sbjct: 192 EKPVT 196 >gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512320;genbank:gi:89152489;genbank:GeneID :3953030 Length = 202 Score = 43.1 bits (100), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 6/185 (3%) Query: 12 GLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEATNNGY 71 G+ N+ YA + +D + AI Y K++ GAV + L + ++D+ ++ Sbjct: 13 GVDNLVYAKVLQDD-SSAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDGET 71 Query: 72 DGELEVANLTDEFRIDVLG-DTYENGVMYENADQVTKPFALLFEFQGDKKAKRHV-LYYC 129 + E+EV L+ + D+ G ++GV+ E + A+ F F R+V L Sbjct: 72 EVEIEVRGLSLSTKADIEGFPEVKDGVLDEKREGEKPYLAIGFRFLKANDKYRYVWLLKG 131 Query: 130 KASRPTVAGQTKAENTEPQTSTL--NFTARPRPDTKEVKADT-TPEIDQALYDSWYTQVH 186 K S+ +TK + QT+ L +F R D + AD P + + D+W+ +V+ Sbjct: 132 KLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDDRTKFTADEDEPTFTKLVGDNWFNKVY 191 Query: 187 VKGAT 191 K T Sbjct: 192 EKPVT 196 >gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612840;genbank:gi:20065974;genbank:GeneID :935777 Length = 198 Score = 39.7 bits (91), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/193 (20%), Positives = 82/193 (42%), Gaps = 10/193 (5%) Query: 7 NKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEA 66 N + G ++++ A++ ++ T T TP ++ A++ + +DD+ + Sbjct: 6 NTRRCGCKDIYIAIVNKNTATEYAT-ATPIKLGRALNAKVTTKKTVESTESDDTIEETFE 64 Query: 67 TNNGYDGELEVANLTDEFRIDVLGDTYENGVMYENADQVTKPFALLFEFQGDKKAKRHVL 126 + + + E +V L+ E + + G TYE+G + N D K A+ + + V Sbjct: 65 SFDSIEIEFDVNKLSPEQKAILRGATYEDGFLINNVDDQAKEVAIGWRARQTNGKYEFVW 124 Query: 127 YYCKASRPTVAGQTKAENTEPQTSTLN----FTARPRPDTKEVKADTTPEID-----QAL 177 YYC Q + +P+T T F R + ++ D T ++ ++ Sbjct: 125 YYCGKFNSGWDDQYETNGKKPKTQTDKMKGTFYGRQKDGNTSIEVDETFLLESHNDAKSS 184 Query: 178 YDSWYTQVHVKGA 190 +W+++V K A Sbjct: 185 ITNWFSKVQEKEA 197 >gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: phage major tail protein, phi13 family subfamily # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699936;genbank:gi:110804026;genbank:GeneI D:4206655 Length = 210 Score = 34.7 bits (78), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 20 VITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEATNNGYDGELEVAN 79 ++TE+ G I++ TP+ + G + ++P T +Y + + E T + + + Sbjct: 23 LLTEE--IGKISFDTPRYLEGVKQIGIKPKQNTDPYYHEGRKIFDEQTIQDVAVTINITD 80 Query: 80 LTDEFRIDVLGDTY-ENGVMYENADQVTKPFALLFEFQGDKKAKRHVLYY 128 LTDE V+G + G + N + + A+++E + + ++ + Y Sbjct: 81 LTDEDECYVMGHKLAKTGGVIRNDNDIAPTLAIMYEAEKAQGVTKYGILY 130 >gi|1682|lcl|protein:vir:100637 Length: 214 # NCBI annotation: 77ORF020 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958612;genbank:gi:41189535;genbank:GeneID :2743783 Length = 214 Score = 21.2 bits (43), Expect = 9.3, Method: Compositional matrix adjust. Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 2/113 (1%) Query: 30 ITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEATNNGYDGELEVANLTDEFRIDVL 89 + Y + G + +E GE YAD S T+ L++ E R V Sbjct: 30 LKYSDITKTRGLQKIGVETGGELKTAYADGGPIESGNTDGEGKISLQMHAFPKEIRKIVF 89 Query: 90 GDTY-ENGVMYENADQVTKPFALLFEFQGDKKAKRHVLY-YCKASRPTVAGQT 140 + Y E+GV E + A+ F + R VL + P + G+T Sbjct: 90 NEDYDEDGVYEEKQGKQNNYVAVWFRQERKDGTFRTVLLPKVMFTNPKIDGET 142 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.312 0.130 0.377 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,969 Number of Sequences: 514 Number of extensions: 4324 Number of successful extensions: 24 Number of sequences better than 100.0: 18 Number of HSP's better than 100.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 18 length of query: 194 length of database: 206,069 effective HSP length: 67 effective length of query: 127 effective length of database: 171,631 effective search space: 21797137 effective search space used: 21797137 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 35 (18.1 bits)