Query lcl|Aclame:protein:vir:94002|NCBI_annot:putative portal protein|genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Match_columns 378 No_of_seqs 155 out of 987 Neff 9.1 Searched_HMMs 1612 Date Mon Dec 2 05:55:41 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_37 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_37_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:94002 Length: 378 100.0 5E-107 3E-110 603.2 40.9 378 1-378 1-378 (378) 2 protein:vir:1661 Length: 378 # 100.0 6E-106 4E-109 597.6 40.3 378 1-378 1-378 (378) 3 protein:vir:93867 Length: 378 100.0 1E-105 6E-109 596.1 40.2 378 1-378 1-378 (378) 4 protein:vir:858 Length: 378 # 100.0 1E-103 9E-107 584.3 39.7 378 1-378 1-378 (378) 5 protein:vir:94869 Length: 378 100.0 3E-103 2E-106 583.0 38.8 378 1-378 1-378 (378) 6 protein:vir:105002 Length: 432 100.0 4E-86 2.5E-89 488.8 37.1 361 1-376 1-432 (432) 7 protein:vir:107605 Length: 432 100.0 4E-86 2.5E-89 488.8 37.1 361 1-376 1-432 (432) 8 protein:vir:102855 Length: 432 100.0 4E-86 2.5E-89 488.8 37.1 361 1-376 1-432 (432) 9 protein:vir:102080 Length: 429 100.0 6.5E-86 4.1E-89 487.6 37.8 361 1-376 1-429 (429) 10 protein:vir:1884 Length: 424 # 100.0 1.4E-84 8.4E-88 480.4 36.1 355 1-373 14-424 (424) 11 protein:vir:81152 Length: 411 100.0 1.3E-84 8.1E-88 480.5 35.2 353 1-375 1-411 (411) 12 protein:vir:1380 Length: 422 # 100.0 2.3E-84 1.4E-87 479.1 35.6 353 1-378 1-422 (422) 13 protein:vir:10362 Length: 432 100.0 2.6E-84 1.6E-87 478.8 35.3 357 1-378 7-429 (432) 14 protein:vir:189 Length: 424 # 100.0 4E-84 2.5E-87 477.8 36.2 355 1-373 14-424 (424) 15 protein:vir:97060 Length: 432 100.0 3.1E-84 1.9E-87 478.4 35.4 357 1-378 7-429 (432) 16 protein:vir:81072 Length: 432 100.0 4.8E-84 3E-87 477.4 36.0 357 1-378 7-429 (432) 17 protein:vir:105064 Length: 421 100.0 5.8E-84 3.6E-87 476.9 36.2 361 1-378 1-417 (421) 18 protein:vir:100150 Length: 437 100.0 4.8E-84 3E-87 477.3 35.4 362 1-378 17-429 (437) 19 protein:vir:5737 Length: 419 # 100.0 9.5E-84 5.9E-87 475.7 36.1 365 1-377 1-419 (419) 20 protein:vir:4509 Length: 424 # 100.0 1.6E-83 1E-86 474.4 36.5 358 1-378 16-424 (424) 21 protein:vir:2683 Length: 412 # 100.0 2.8E-83 1.7E-86 473.2 36.5 352 1-378 1-411 (412) 22 protein:vir:4454 Length: 414 # 100.0 3.5E-83 2.2E-86 472.7 36.1 360 1-377 1-414 (414) 23 protein:vir:4337 Length: 434 # 100.0 4.7E-83 2.9E-86 471.9 36.3 361 1-378 18-434 (434) 24 protein:vir:8418 Length: 409 # 100.0 7.2E-83 4.5E-86 470.9 37.3 353 1-378 1-409 (409) 25 protein:vir:1266 Length: 416 # 100.0 9.3E-83 5.8E-86 470.3 36.8 358 2-378 1-415 (416) 26 protein:vir:102118 Length: 409 100.0 6.6E-83 4.1E-86 471.1 35.8 351 1-374 1-409 (409) 27 protein:vir:1431 Length: 419 # 100.0 4.5E-83 2.8E-86 472.0 34.8 364 2-378 1-415 (419) 28 protein:vir:96980 Length: 409 100.0 9.4E-83 5.8E-86 470.3 36.2 352 1-378 4-408 (409) 29 protein:vir:100249 Length: 431 100.0 2.3E-82 1.4E-85 468.2 35.3 348 1-372 1-431 (431) 30 protein:vir:483 Length: 413 # 100.0 1E-81 6.4E-85 464.6 36.3 355 1-378 4-410 (413) 31 protein:vir:98396 Length: 441 100.0 1.5E-81 9.5E-85 463.6 35.4 353 1-377 26-441 (441) 32 protein:vir:93943 Length: 409 100.0 2E-81 1.3E-84 463.0 36.0 352 1-378 4-408 (409) 33 protein:vir:79984 Length: 441 100.0 2.7E-81 1.7E-84 462.2 35.3 353 1-377 26-441 (441) 34 protein:vir:9408 Length: 441 # 100.0 2.7E-81 1.7E-84 462.2 35.3 353 1-377 26-441 (441) 35 protein:vir:4598 Length: 416 # 100.0 5.2E-81 3.2E-84 460.7 36.4 355 1-377 1-416 (416) 36 protein:vir:81095 Length: 416 100.0 5.2E-81 3.2E-84 460.7 36.4 355 1-377 1-416 (416) 37 protein:vir:80333 Length: 419 100.0 2.5E-81 1.6E-84 462.4 33.7 363 1-378 1-413 (419) 38 protein:vir:3868 Length: 417 # 100.0 1.1E-80 7E-84 458.9 36.1 356 1-378 1-405 (417) 39 protein:vir:94426 Length: 409 100.0 1.1E-80 7.1E-84 458.9 36.1 352 1-378 4-408 (409) 40 protein:vir:80134 Length: 403 100.0 1.5E-80 9.3E-84 458.2 35.8 358 1-378 1-403 (403) 41 protein:vir:93610 Length: 454 100.0 9.1E-80 5.6E-83 453.9 36.8 358 1-378 2-434 (454) 42 protein:vir:9702 Length: 406 # 100.0 5.6E-80 3.5E-83 455.1 35.6 352 1-378 1-402 (406) 43 protein:vir:81218 Length: 423 100.0 1.2E-79 7.2E-83 453.3 36.4 356 1-372 1-423 (423) 44 protein:vir:6240 Length: 457 # 100.0 2E-79 1.2E-82 452.0 35.4 360 1-378 1-450 (457) 45 protein:vir:95378 Length: 406 100.0 7.1E-79 4.4E-82 449.0 36.7 359 1-378 1-406 (406) 46 protein:vir:1326 Length: 457 # 100.0 1.6E-78 1E-81 447.1 35.4 360 1-378 1-436 (457) 47 protein:vir:960 Length: 413 # 100.0 1.8E-78 1.1E-81 446.8 35.2 350 1-370 13-413 (413) 48 protein:vir:101648 Length: 518 100.0 3.9E-78 2.4E-81 445.0 36.9 359 1-378 1-431 (518) 49 protein:vir:7853 Length: 518 # 100.0 5.2E-78 3.2E-81 444.3 37.3 360 1-378 1-435 (518) 50 protein:vir:95965 Length: 385 100.0 2.1E-78 1.3E-81 446.5 35.1 346 1-378 1-385 (385) 51 protein:vir:100650 Length: 395 100.0 9.3E-78 5.8E-81 442.9 34.8 355 1-378 1-393 (395) 52 protein:vir:9507 Length: 395 # 100.0 9.3E-78 5.8E-81 442.9 34.8 355 1-378 1-393 (395) 53 protein:vir:101289 Length: 395 100.0 9.3E-78 5.8E-81 442.9 34.8 355 1-378 1-393 (395) 54 protein:vir:4089 Length: 395 # 100.0 2.8E-77 1.7E-80 440.3 34.3 356 1-377 1-395 (395) 55 protein:vir:78310 Length: 376 100.0 1.5E-76 9.6E-80 436.2 32.1 339 1-363 1-376 (376) 56 protein:vir:94666 Length: 723 100.0 1.6E-75 1E-78 430.6 35.6 352 7-378 1-425 (723) 57 protein:vir:9641 Length: 395 # 100.0 2.2E-75 1.4E-78 429.9 33.1 346 1-373 1-395 (395) 58 protein:vir:98643 Length: 395 100.0 1.3E-74 8.2E-78 425.6 34.0 349 1-373 1-395 (395) 59 protein:vir:9359 Length: 348 # 100.0 1.5E-74 9.2E-78 425.3 34.0 305 48-378 1-347 (348) 60 protein:vir:104259 Length: 403 100.0 3.7E-74 2.3E-77 423.2 35.7 356 1-376 1-403 (403) 61 protein:vir:6210 Length: 394 # 100.0 1.9E-74 1.2E-77 424.7 33.1 352 1-377 1-394 (394) 62 protein:vir:101647 Length: 460 100.0 9.5E-74 5.9E-77 420.9 33.9 361 1-378 2-460 (460) 63 protein:vir:102727 Length: 945 100.0 7.1E-73 4.4E-76 416.1 36.7 363 1-378 62-529 (945) 64 protein:vir:3843 Length: 397 # 100.0 7.9E-73 4.9E-76 415.9 34.2 342 1-378 1-395 (397) 65 protein:vir:8317 Length: 409 # 100.0 2.3E-72 1.4E-75 413.4 32.9 324 1-353 1-409 (409) 66 protein:vir:8100 Length: 466 # 100.0 3.8E-71 2.4E-74 406.6 34.1 354 1-377 1-466 (466) 67 protein:vir:100187 Length: 385 100.0 3.1E-68 1.9E-71 390.7 33.0 328 1-377 1-385 (385) 68 protein:vir:80796 Length: 574 100.0 1E-66 6.4E-70 382.3 34.9 361 1-378 63-525 (574) 69 protein:vir:100882 Length: 383 100.0 8.1E-67 5E-70 382.9 33.1 328 1-378 1-383 (383) 70 protein:vir:4854 Length: 386 # 100.0 1.3E-65 7.8E-69 376.4 33.4 327 1-378 1-386 (386) 71 protein:vir:100691 Length: 535 100.0 2.4E-65 1.5E-68 374.8 32.6 363 1-378 34-515 (535) 72 protein:vir:7407 Length: 392 # 100.0 4.9E-65 3E-68 373.2 32.4 314 1-355 3-392 (392) 73 protein:vir:1023 Length: 392 # 100.0 1.1E-64 6.7E-68 371.3 32.6 325 1-372 3-392 (392) 74 protein:vir:3989 Length: 392 # 100.0 1.1E-64 6.7E-68 371.3 32.6 325 1-372 3-392 (392) 75 protein:vir:1082 Length: 359 # 100.0 1E-63 6.4E-67 365.9 31.6 301 1-342 1-359 (359) 76 protein:vir:80644 Length: 551 100.0 1.6E-63 1E-66 364.8 31.2 361 1-378 31-527 (551) 77 protein:vir:3153 Length: 467 # 100.0 1E-62 6.2E-66 360.5 33.5 342 27-378 1-445 (467) 78 protein:vir:4995 Length: 384 # 100.0 2.6E-63 1.6E-66 363.7 29.3 320 1-348 1-384 (384) 79 protein:vir:96579 Length: 576 100.0 2E-62 1.3E-65 358.8 33.5 360 1-378 54-524 (576) 80 protein:vir:4952 Length: 386 # 100.0 2.2E-62 1.4E-65 358.6 33.0 327 1-378 1-385 (386) 81 protein:vir:99312 Length: 563 100.0 4.9E-62 3E-65 356.7 32.7 359 1-378 43-525 (563) 82 protein:vir:95599 Length: 563 100.0 4.9E-62 3E-65 356.7 32.7 359 1-378 43-525 (563) 83 protein:vir:4828 Length: 382 # 100.0 4.5E-62 2.8E-65 356.9 32.3 322 1-378 1-382 (382) 84 protein:vir:63755 Length: 547 100.0 1.1E-61 6.7E-65 354.8 32.2 360 1-378 29-517 (547) 85 protein:vir:4194 Length: 540 # 100.0 4.1E-61 2.5E-64 351.6 34.0 345 3-378 1-453 (540) 86 protein:vir:4156 Length: 542 # 100.0 1E-59 6.4E-63 344.0 33.3 344 3-378 1-451 (542) 87 protein:vir:99452 Length: 651 100.0 1.2E-56 7.5E-60 327.2 30.1 356 1-378 102-539 (651) 88 protein:vir:79772 Length: 648 100.0 2.6E-54 1.6E-57 314.3 31.5 355 1-378 59-505 (648) 89 protein:vir:78641 Length: 278 100.0 2.3E-51 1.4E-54 298.2 27.5 236 48-306 1-278 (278) 90 protein:vir:79150 Length: 368 100.0 7.2E-42 4.4E-45 246.2 20.7 283 1-325 1-368 (368) 91 protein:vir:267 Length: 348 # 100.0 1.7E-39 1E-42 233.2 26.7 291 1-314 1-348 (348) 92 protein:vir:103971 Length: 376 100.0 1.4E-39 8.9E-43 233.5 24.5 263 1-313 45-376 (376) 93 protein:vir:100328 Length: 346 100.0 1.6E-39 9.9E-43 233.3 23.7 275 1-311 1-346 (346) 94 protein:vir:78749 Length: 337 100.0 6.1E-39 3.8E-42 230.1 25.3 282 1-307 1-337 (337) 95 protein:vir:78191 Length: 351 100.0 6.1E-39 3.8E-42 230.1 24.5 262 1-313 20-351 (351) 96 protein:vir:79207 Length: 351 100.0 8.9E-39 5.5E-42 229.2 24.5 274 1-313 20-351 (351) 97 protein:vir:98567 Length: 340 100.0 7.9E-39 4.9E-42 229.5 23.9 269 1-310 1-340 (340) 98 protein:vir:5691 Length: 344 # 100.0 1.4E-38 8.8E-42 228.1 21.9 271 1-311 1-344 (344) 99 protein:vir:6058 Length: 344 # 100.0 3.8E-38 2.4E-41 225.7 23.4 269 3-311 1-344 (344) 100 protein:vir:4698 Length: 251 # 100.0 1.7E-38 1E-41 227.7 19.9 199 1-213 1-251 (251) 101 protein:vir:1150 Length: 350 # 100.0 9.1E-38 5.6E-41 223.7 22.7 270 1-306 12-350 (350) 102 protein:vir:2013 Length: 344 # 100.0 8.7E-38 5.4E-41 223.8 22.4 271 1-311 1-344 (344) 103 protein:vir:3743 Length: 345 # 100.0 3.7E-37 2.3E-40 220.3 25.5 273 1-308 1-345 (345) 104 protein:vir:3780 Length: 345 # 100.0 2.7E-36 1.7E-39 215.6 26.3 274 1-308 1-345 (345) 105 protein:vir:98853 Length: 219 100.0 7.9E-33 4.9E-36 196.6 19.2 185 112-310 1-219 (219) 106 protein:vir:5249 Length: 437 # 99.8 7.2E-21 4.4E-24 131.0 26.3 347 1-378 1-437 (437) 107 protein:vir:107742 Length: 537 99.8 3.9E-19 2.4E-22 121.5 26.1 349 1-378 55-528 (537) 108 protein:vir:94049 Length: 532 99.7 1.8E-18 1.1E-21 117.9 24.7 352 1-378 55-515 (532) 109 protein:vir:99563 Length: 862 99.7 1.9E-18 1.2E-21 117.7 23.7 349 1-378 101-563 (862) 110 protein:vir:96068 Length: 765 99.6 3.9E-16 2.4E-19 105.0 20.8 347 1-378 84-523 (765) 111 protein:vir:107662 Length: 427 99.5 2.1E-15 1.3E-18 101.1 21.0 331 1-378 1-426 (427) 112 protein:vir:80040 Length: 461 99.5 4E-15 2.5E-18 99.5 21.7 338 1-377 20-461 (461) 113 protein:vir:79647 Length: 435 99.5 3E-15 1.9E-18 100.2 20.2 329 1-378 1-435 (435) 114 protein:vir:104338 Length: 422 99.5 1.9E-14 1.2E-17 95.8 20.5 332 1-378 1-422 (422) 115 protein:vir:79538 Length: 502 99.4 9.5E-14 5.9E-17 92.0 21.9 367 1-378 1-502 (502) 116 protein:vir:96738 Length: 505 99.4 3.2E-14 2E-17 94.6 16.6 365 1-377 8-505 (505) 117 protein:vir:95542 Length: 548 99.3 2E-12 1.2E-15 84.8 21.9 368 1-378 1-515 (548) 118 protein:vir:108215 Length: 469 99.3 3.2E-11 2E-14 78.1 26.7 355 1-378 14-455 (469) 119 protein:vir:103860 Length: 528 99.2 1.8E-10 1.1E-13 74.0 29.1 359 1-378 5-450 (528) 120 protein:vir:389 Length: 530 # 99.2 2.4E-12 1.5E-15 84.3 18.5 378 1-378 1-527 (530) 121 protein:vir:10321 Length: 495 99.2 7.3E-12 4.5E-15 81.6 20.3 367 1-378 1-495 (495) 122 protein:vir:99232 Length: 526 99.2 4E-10 2.5E-13 72.1 29.5 361 1-378 5-448 (526) 123 protein:vir:3420 Length: 533 # 99.2 4.8E-12 3E-15 82.6 17.9 377 1-378 1-531 (533) 124 protein:vir:79233 Length: 526 99.2 1.2E-09 7.3E-13 69.5 29.4 361 1-378 5-445 (526) 125 protein:vir:107880 Length: 491 99.1 1E-09 6.3E-13 69.9 27.4 349 1-378 3-423 (491) 126 protein:vir:99853 Length: 488 99.1 2.2E-09 1.4E-12 68.1 29.5 345 1-378 17-411 (488) 127 protein:vir:4073 Length: 279 # 99.1 1.4E-12 8.9E-16 85.5 11.1 257 1-345 1-279 (279) 128 protein:vir:107517 Length: 639 99.1 8.4E-11 5.2E-14 75.8 20.7 374 1-378 6-523 (639) 129 protein:vir:97900 Length: 639 99.1 8.4E-11 5.2E-14 75.8 20.7 374 1-378 6-523 (639) 130 protein:vir:105782 Length: 449 99.1 2.9E-10 1.8E-13 72.9 22.1 332 1-378 23-448 (449) 131 protein:vir:79063 Length: 491 99.1 2.4E-09 1.5E-12 67.8 27.1 346 1-378 30-423 (491) 132 protein:vir:106491 Length: 646 99.0 3.8E-10 2.4E-13 72.2 22.0 370 1-378 1-492 (646) 133 protein:vir:6382 Length: 553 # 99.0 2.7E-10 1.7E-13 73.0 20.9 372 1-378 2-553 (553) 134 protein:vir:95254 Length: 488 99.0 6.5E-09 4.1E-12 65.5 27.3 369 1-378 17-481 (488) 135 protein:vir:102426 Length: 631 99.0 2E-10 1.3E-13 73.7 19.0 373 1-378 7-518 (631) 136 protein:vir:8654 Length: 629 # 99.0 4.5E-10 2.8E-13 71.8 20.5 372 1-378 6-512 (629) 137 protein:vir:99088 Length: 629 99.0 6.6E-10 4.1E-13 70.9 20.2 372 1-378 6-512 (629) 138 protein:vir:1986 Length: 512 # 98.9 1.2E-08 7.1E-12 64.1 27.3 359 1-378 5-442 (512) 139 protein:vir:106027 Length: 629 98.9 1.8E-09 1.1E-12 68.5 22.0 373 1-378 6-512 (629) 140 protein:vir:79511 Length: 448 98.9 1.9E-08 1.2E-11 62.9 25.8 348 3-378 1-440 (448) 141 protein:vir:78589 Length: 695 98.8 6.5E-09 4E-12 65.5 21.6 350 1-378 92-559 (695) 142 protein:vir:101541 Length: 694 98.8 7.3E-09 4.5E-12 65.2 21.7 354 1-378 91-546 (694) 143 protein:vir:3648 Length: 695 # 98.8 7.7E-09 4.8E-12 65.1 21.7 350 1-378 92-547 (695) 144 protein:vir:98816 Length: 446 98.8 3.9E-08 2.4E-11 61.2 24.2 324 1-346 1-446 (446) 145 protein:vir:106716 Length: 698 98.8 2E-08 1.2E-11 62.8 22.1 348 1-378 92-544 (698) 146 protein:vir:77981 Length: 448 98.6 2.1E-07 1.3E-10 57.2 25.0 346 1-378 1-440 (448) 147 protein:vir:97376 Length: 320 98.4 1.1E-08 6.6E-12 64.3 11.3 280 1-349 1-320 (320) 148 protein:vir:78161 Length: 355 98.2 3.2E-06 2E-09 50.7 23.5 266 108-378 1-335 (355) 149 protein:vir:103219 Length: 201 98.0 1.4E-06 8.6E-10 52.7 15.1 177 172-378 1-201 (201) 150 protein:vir:7768 Length: 484 # 96.8 0.00034 2.1E-07 39.6 17.9 343 1-378 21-479 (484) 151 protein:vir:5961 Length: 503 # 95.5 0.002 1.2E-06 35.4 24.8 339 1-378 50-499 (503) 152 protein:vir:2341 Length: 488 # 95.4 0.0021 1.3E-06 35.3 19.8 352 1-378 10-484 (488) 153 protein:vir:2427 Length: 485 # 95.4 0.0022 1.3E-06 35.2 19.7 342 1-378 6-476 (485) 154 protein:vir:7987 Length: 456 # 95.3 0.0023 1.4E-06 35.0 18.9 336 1-378 21-456 (456) 155 protein:vir:98883 Length: 517 95.2 0.0026 1.6E-06 34.7 14.7 363 1-378 1-517 (517) 156 protein:vir:98444 Length: 434 94.8 0.0034 2.1E-06 34.1 20.5 333 14-377 1-434 (434) 157 protein:vir:1587 Length: 508 # 94.8 0.0035 2.2E-06 34.0 16.3 355 1-378 1-508 (508) 158 protein:vir:1236 Length: 483 # 94.6 0.0039 2.4E-06 33.8 20.8 324 1-378 58-480 (483) 159 protein:vir:94805 Length: 492 94.6 0.004 2.5E-06 33.8 21.0 328 1-378 50-492 (492) 160 protein:vir:97336 Length: 492 94.4 0.0044 2.7E-06 33.5 20.8 326 1-378 50-492 (492) 161 protein:vir:94742 Length: 409 94.4 0.0047 2.9E-06 33.4 22.3 303 1-342 3-409 (409) 162 protein:vir:3964 Length: 453 # 94.1 0.0054 3.3E-06 33.0 18.0 337 1-378 1-453 (453) 163 protein:vir:1634 Length: 409 # 94.1 0.0055 3.4E-06 33.0 21.5 303 1-342 3-409 (409) 164 protein:vir:8184 Length: 474 # 93.9 0.0059 3.7E-06 32.8 19.7 351 1-374 17-474 (474) 165 protein:vir:97447 Length: 474 93.9 0.006 3.8E-06 32.7 19.9 327 1-378 33-474 (474) 166 protein:vir:94498 Length: 474 93.9 0.006 3.8E-06 32.7 19.9 327 1-378 33-474 (474) 167 protein:vir:4223 Length: 486 # 93.5 0.0073 4.6E-06 32.3 19.0 341 1-378 29-478 (486) 168 protein:vir:93747 Length: 472 93.2 0.0084 5.2E-06 32.0 21.5 323 1-378 22-472 (472) 169 protein:vir:99072 Length: 479 93.1 0.0089 5.5E-06 31.8 19.4 338 1-378 20-470 (479) 170 protein:vir:5839 Length: 533 # 93.0 0.0092 5.7E-06 31.8 18.2 356 1-378 17-526 (533) 171 protein:vir:104082 Length: 485 92.6 0.011 6.6E-06 31.4 21.6 343 1-378 29-483 (485) 172 protein:vir:95113 Length: 474 92.6 0.011 6.7E-06 31.3 21.1 322 1-378 54-471 (474) 173 protein:vir:9751 Length: 422 # 92.6 0.011 6.8E-06 31.3 20.4 310 1-364 1-422 (422) 174 protein:vir:4898 Length: 502 # 92.4 0.011 7E-06 31.2 23.1 350 1-378 46-498 (502) 175 protein:vir:79703 Length: 505 92.3 0.012 7.5E-06 31.1 19.2 342 1-374 1-505 (505) 176 protein:vir:95899 Length: 474 92.0 0.013 8.3E-06 30.8 19.3 324 1-378 50-472 (474) 177 protein:vir:96266 Length: 474 92.0 0.013 8.3E-06 30.8 19.3 324 1-378 50-472 (474) 178 protein:vir:102602 Length: 456 91.7 0.014 9E-06 30.7 21.9 344 1-377 7-456 (456) 179 protein:vir:105819 Length: 456 91.7 0.014 9E-06 30.7 21.9 344 1-377 7-456 (456) 180 protein:vir:96494 Length: 501 90.7 0.019 1.2E-05 30.0 23.8 345 1-378 38-499 (501) 181 protein:vir:105889 Length: 474 89.8 0.024 1.5E-05 29.4 22.7 340 1-376 38-474 (474) 182 protein:vir:94101 Length: 474 89.8 0.024 1.5E-05 29.4 22.7 340 1-376 38-474 (474) 183 protein:vir:103951 Length: 511 89.6 0.025 1.6E-05 29.3 21.9 350 1-378 46-509 (511) 184 protein:vir:106639 Length: 481 89.5 0.026 1.6E-05 29.3 22.1 342 1-378 44-480 (481) 185 protein:vir:78537 Length: 480 89.2 0.028 1.7E-05 29.1 17.8 341 1-378 1-466 (480) 186 protein:vir:3609 Length: 452 # 87.7 0.037 2.3E-05 28.4 20.2 332 1-378 6-452 (452) 187 protein:vir:9568 Length: 410 # 87.6 0.038 2.3E-05 28.4 22.1 317 1-366 1-410 (410) 188 protein:vir:96240 Length: 511 85.5 0.053 3.3E-05 27.6 22.5 350 1-378 46-509 (511) 189 protein:vir:2732 Length: 501 # 85.4 0.053 3.3E-05 27.6 23.0 347 1-378 38-497 (501) 190 protein:vir:99916 Length: 504 84.7 0.058 3.6E-05 27.3 23.0 357 1-378 1-492 (504) 191 protein:vir:97171 Length: 512 84.5 0.06 3.7E-05 27.3 23.2 351 1-378 46-510 (512) 192 protein:vir:78227 Length: 480 84.0 0.064 4E-05 27.1 17.7 349 1-378 1-470 (480) 193 protein:vir:94546 Length: 506 82.7 0.074 4.6E-05 26.8 20.5 343 1-378 28-504 (506) 194 protein:vir:80680 Length: 441 82.3 0.078 4.8E-05 26.7 18.6 326 1-378 17-440 (441) 195 protein:vir:105154 Length: 525 82.3 0.078 4.9E-05 26.6 14.8 349 1-378 51-515 (525) 196 protein:vir:99781 Length: 511 80.7 0.093 5.7E-05 26.3 20.8 351 1-378 46-511 (511) 197 protein:vir:78907 Length: 518 80.3 0.096 6E-05 26.2 19.1 352 1-372 1-518 (518) 198 protein:vir:9871 Length: 429 # 78.7 0.11 6.9E-05 25.8 20.2 330 1-377 7-429 (429) 199 protein:vir:9306 Length: 511 # 76.6 0.13 8.3E-05 25.4 21.9 347 1-378 46-511 (511) 200 protein:vir:105292 Length: 478 76.4 0.14 8.4E-05 25.3 21.5 331 1-378 32-477 (478) 201 protein:vir:99522 Length: 470 74.3 0.16 9.9E-05 24.9 21.9 337 1-378 39-470 (470) 202 protein:vir:9815 Length: 500 # 74.2 0.16 0.0001 24.9 20.7 337 1-378 1-494 (500) 203 protein:vir:3028 Length: 500 # 74.2 0.16 0.0001 24.9 20.7 337 1-378 1-494 (500) 204 protein:vir:78805 Length: 511 69.6 0.22 0.00014 24.2 23.7 347 1-378 46-511 (511) 205 protein:vir:96366 Length: 511 69.6 0.22 0.00014 24.2 23.7 347 1-378 46-511 (511) 206 protein:vir:2500 Length: 501 # 69.0 0.23 0.00014 24.1 20.9 339 1-378 33-492 (501) 207 protein:vir:95806 Length: 440 67.4 0.25 0.00016 23.9 20.5 338 3-378 1-440 (440) 208 protein:vir:96839 Length: 474 64.9 0.29 0.00018 23.5 23.1 327 1-378 35-471 (474) 209 protein:vir:107112 Length: 478 64.4 0.3 0.00019 23.4 20.8 330 1-378 32-478 (478) 210 protein:vir:4782 Length: 522 # 62.4 0.33 0.00021 23.2 20.5 351 1-378 1-521 (522) 211 protein:vir:79043 Length: 479 59.2 0.4 0.00025 22.8 22.3 329 1-378 20-478 (479) 212 protein:vir:733 Length: 453 # 56.2 0.46 0.00029 22.4 18.6 337 1-378 1-449 (453) 213 protein:vir:100598 Length: 516 49.6 0.63 0.00039 21.7 19.3 348 1-378 51-513 (516) 214 protein:vir:38 Length: 496 # N 44.4 0.81 0.0005 21.1 16.1 346 1-378 16-496 (496) 215 protein:vir:101189 Length: 516 37.4 1.1 0.0007 20.3 19.0 346 1-378 20-514 (516) 216 protein:vir:101806 Length: 516 37.4 1.1 0.0007 20.3 19.0 346 1-378 20-514 (516) 217 protein:vir:9922 Length: 489 # 30.1 1.6 0.00099 19.5 21.7 349 1-378 21-488 (489) 218 protein:vir:106282 Length: 521 27.5 1.8 0.0011 19.1 18.1 353 1-378 22-520 (521) 219 protein:vir:78083 Length: 537 20.4 2.8 0.0017 18.1 26.8 334 1-378 44-520 (537) No 1 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=5.3e-107 Score=603.21 Aligned_cols=378 Identities=100% Similarity=1.386 Sum_probs=366.6 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) ||||++.++|++.....+...+++|.+..+.|.+++|++||++||++||++||+||++..+++..+...+..+|++++|| T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) T ss_pred CCccccchhcccccccCCcceeeeeccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCcccccccccccchHHHHH Confidence 99999999999999988888899999888999999999999999999999999999999998888888888999999999 Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCCeEEEeeeEEEEEccccCCccccchHHHHHHHH Q lcl|Aclame:pro 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADDKKEYKPEELVRLTSPFYINEDTSILDNALASI 160 (378) Q Consensus 81 ~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~~~~~~~~dvih~r~~~~~~~~~~~~~~~~~~i 160 (378) +.+|||+||+++||+.++.+++++||||+++++++.+|++++++|.+++++|+++||||||+|+++..|.||++.+++++ T Consensus 81 ~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~p~~~~~~~~~~diiH~~~~~~~~~g~s~l~~~~~~i 160 (378) T protein:vir:94 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADDKKEYKPEELVRLTSPFYINEDTSILDNALASI 160 (378) T ss_pred hhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEEecCCeeEeeeeeeEEecCcCCccchhHHHHHHHHHH Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999 Q ss_pred HHHHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLT 240 (378) Q Consensus 161 ~~~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) ..++.+++++|+|++++.+++++.++++++|++.|++..+++++++++++++|++|+++++++++++++++++++++||+ T Consensus 161 ~~~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) T protein:vir:94 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLT 240 (378) T ss_pred HHHHhcccccceeeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEEccCChhhhhHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999899999999999999999999999999998888999999999 Q ss_pred HhCCCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHH Q lcl|Aclame:pro 241 GYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) Q Consensus 241 ~fgVPp~~l~~~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~ 320 (378) +|||||++|+|+++++++.+|+++||.||+++||++||++||++.++..|++..++.++.|+.+.++++|.+++++++.+ T Consensus 241 ~fgVP~~~l~~~~se~~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~ 320 (378) T protein:vir:94 241 GYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) T ss_pred HhCCCHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999988888899999999999999999999999 Q ss_pred HHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 321 NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 321 ~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++||||+||+|+++||||+||||++++|+|++|++.++++++++++.++++|+||| T Consensus 321 ~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 321 NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccccccchhhcCCcCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=5.7e-106 Score=597.58 Aligned_cols=378 Identities=100% Similarity=1.384 Sum_probs=366.7 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) ||||++.++|+++..+.....+++|.++.+.|++++|++||++||++||++||++|+++..+...+...+..+|+|++|| T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) T ss_pred CccchhhhhhhcccccCCcceeeecccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEcccccccccccccccchHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999998888888888999999999 Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCCeEEEeeeEEEEEccccCCccccchHHHHHHHH Q lcl|Aclame:pro 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADDKKEYKPEELVRLTSPFYINEDTSILDNALASI 160 (378) Q Consensus 81 ~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~~~~~~~~dvih~r~~~~~~~~~~~~~~~~~~i 160 (378) +.+||++||+++||+.++.+++++||||+++++++..|++++++|.+++++|+++||||||+|+++..+.++++.+++++ T Consensus 81 ~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~~l~~~~~~~~~~~~diih~r~~~~~~~~~s~l~~~~~~i 160 (378) T protein:vir:16 81 NWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFADDKKEYKPEELVRLTSPFYINEDTSILDNALASI 160 (378) T ss_pred hhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecCCeeEecccceEEecCccCccchhHHHHHHHHHH Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999 Q ss_pred HHHHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLT 240 (378) Q Consensus 161 ~~~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) ..++.+++++|++++++.+++++.++++++|++.|++..+++++++++++++|++|++++++++++++.++++++++||+ T Consensus 161 ~~~~~~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) T protein:vir:16 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLT 240 (378) T ss_pred HHHHhcCccceeeEeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999 Q ss_pred HhCCCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHH Q lcl|Aclame:pro 241 GYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) Q Consensus 241 ~fgVPp~~l~~~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~ 320 (378) +|||||.+|+|+++|+++++|+++||.||+++||++||++||++.++..+++..++.++.|+.+.+++.|.+++++++.+ T Consensus 241 ~fgVPp~~l~g~~~e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~ 320 (378) T protein:vir:16 241 GYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) T ss_pred HhCCCHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcCHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999988888899999999999999999999999 Q ss_pred HHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 321 NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 321 ~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++||+|+||+|+++|+||+||||++++|+|++|++.+.+.++++++.++++|+||| T Consensus 321 ~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~ne 378 (378) T protein:vir:16 321 NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCCCeEeeccccccccchhhhcCccCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=1e-105 Score=596.12 Aligned_cols=378 Identities=99% Similarity=1.377 Sum_probs=366.5 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) ||||++.++|++...+.....+++|.++.+.|++++|++||++||++||++||+||+++.++...+...+..+|+|++|| T Consensus 1 Mg~f~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) T ss_pred CccchhhhhhhccccCCCcceeeecccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccccccccccccccchHHHHH Confidence 99999999999999988888899999999999999999999999999999999999999988888888888999999999 Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCCeEEEeeeEEEEEccccCCccccchHHHHHHHH Q lcl|Aclame:pro 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADDKKEYKPEELVRLTSPFYINEDTSILDNALASI 160 (378) Q Consensus 81 ~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~~~~~~~~dvih~r~~~~~~~~~~~~~~~~~~i 160 (378) +.+|||+||+++||+.++.+++++||||+++++++..|++++++|.+++++|+++||||+|+|+++..+.++++.+++++ T Consensus 81 ~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~~~~~~~~~~~~diih~r~~~~~~~~~s~l~~~~~~i 160 (378) T protein:vir:93 81 NWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFADDKKEYKTEELVRLTSPFYINEDTSILDNALASI 160 (378) T ss_pred hhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecCCeeEeccceeEEecCccccchhhHHHHHHHHHH Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999 Q ss_pred HHHHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLT 240 (378) Q Consensus 161 ~~~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) ..++.+++++|++++++.+++++.++++++|++.|++..+++++++++++++|++|+++++++.+++++++++++++||+ T Consensus 161 ~~~~~~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) T protein:vir:93 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLT 240 (378) T ss_pred HHHHhcCcccceeeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999 Q ss_pred HhCCCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHH Q lcl|Aclame:pro 241 GYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) Q Consensus 241 ~fgVPp~~l~~~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~ 320 (378) +|||||++|+|+++|+++.+|++.||.|++++||++||++||++.++..|++..++.++.||.+.++++|.++|++++.+ T Consensus 241 ~fgVPp~~l~g~~~e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~ 320 (378) T protein:vir:93 241 GYFMNENILLGTATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) T ss_pred HhCCCHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999 Q ss_pred HHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 321 NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 321 ~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++||+|+||+|+++|+||+||||++++|+|++|++.++++++++++.++++|+||| T Consensus 321 ~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:93 321 NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCCCeeeeccccccccchhhhcCccCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=1.5e-103 Score=584.34 Aligned_cols=378 Identities=95% Similarity=1.339 Sum_probs=362.4 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) ||||+|+++|++....+......++.++.+++.+++|++||++||++||++||++|+++.++...+...+..+|+|++|| T Consensus 1 M~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) T ss_pred CchhhhhhhhhhcccccCCcceeeeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEEeccccccccccccccchHHHHH Confidence 99999999988877766666777788888889999999999999999999999999999888877777888999999999 Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCCeEEEeeeEEEEEccccCCccccchHHHHHHHH Q lcl|Aclame:pro 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADDKKEYKPEELVRLTSPFYINEDTSILDNALASI 160 (378) Q Consensus 81 ~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~~~~~~~~dvih~r~~~~~~~~~~~~~~~~~~i 160 (378) +.+||++||+++||+.++.+++++||||++++.++..|+++++++.++++.|.++||||++.+++.+.+.++++.+.+++ T Consensus 81 ~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~~~~~~~~~~dvih~~~~~~~~~~~~~~~~a~~~~ 160 (378) T protein:vir:85 81 NWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLLFANDKKEYKPEELVRLVSPFYINEDTSILDNALASI 160 (378) T ss_pred hccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEEecCCCEEEcccceEEEecCcCccchhhHHHHHHHHH Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999 Q ss_pred HHHHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLT 240 (378) Q Consensus 161 ~~~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) ..++++++++|+++.++.+++++.++++++|++.+++..++.++++++++++|++|+++++++++++++.+++++++||+ T Consensus 161 ~~~~~~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) T protein:vir:85 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIELIKSELLT 240 (378) T ss_pred HHHHhcCCcceEEEeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhhhHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999888999999999999999999999999998888999999999 Q ss_pred HhCCCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHH Q lcl|Aclame:pro 241 GYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) Q Consensus 241 ~fgVPp~~l~~~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~ 320 (378) +|||||++|+|+++|+++.+|+++||.||+.+||++||++||+++++..+++..++.++.|+.+.++++|.+++++++.+ T Consensus 241 ~fgVPp~~l~~s~~e~~~~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~ 320 (378) T protein:vir:85 241 GYFMNENILLGTATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) T ss_pred HhCCCHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcCHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999 Q ss_pred HHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 321 NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 321 ~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++||+|+||+|+++|+||+||||++++|+|++|++.++++++++++.++++|+||| T Consensus 321 ~~~~G~~T~NE~R~~lgl~p~~gGD~~~~~~N~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:85 321 NINGPIFTQNQLLVKMGEQPIEGGDIYIANLNAVAVKNLSDLQGSRKDVASTDETNNQ 378 (378) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccccccchhhcCccCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=2.6e-103 Score=583.03 Aligned_cols=378 Identities=96% Similarity=1.351 Sum_probs=363.3 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) ||+|+|.++|++....+......++.++.+.+.+++|++||++||++||++|+++|++++.++..+...+..+|+|++|| T Consensus 1 M~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) T ss_pred CchhHHhHhhhhcccccCcceeeeeecchhhhhhHHHHHHHHHHHHhHhhCceeeeeecccccccccccccccchHHHHH Confidence 99999999998877766667777788888889999999999999999999999999999988888888888999999999 Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCCeEEEeeeEEEEEccccCCccccchHHHHHHHH Q lcl|Aclame:pro 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADDKKEYKPEELVRLTSPFYINEDTSILDNALASI 160 (378) Q Consensus 81 ~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~~~~~~~~dvih~r~~~~~~~~~~~~~~~~~~i 160 (378) +.+|||+||+++||+.++.+++++||||+++++++..|++++++|.++++.|+++||+|+|++++.+.+.++++.+.+++ T Consensus 81 n~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~~~~~~~~~~dvih~~~~~~~~~~~~~~~~~~~~~ 160 (378) T protein:vir:94 81 NWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLLFANDKKEYKPEELVRLTSPFYINEDTSILDNALASI 160 (378) T ss_pred hhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEEecCcEEechhceeeecCcCCcccchhHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999 Q ss_pred HHHHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLT 240 (378) Q Consensus 161 ~~~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) ..++.+++++|+++.++.+++++.++++++|++.|++..+++++++++++++|++|+++++++++++++.+++++++||+ T Consensus 161 ~~~~~~~~~~g~l~~~~~l~~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~ 240 (378) T protein:vir:94 161 QTKLEQGKLRGLLKINAFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLT 240 (378) T ss_pred HHHHhhCCcccceeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceeccCCceEEEccCChHHhhHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999 Q ss_pred HhCCCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHH Q lcl|Aclame:pro 241 GYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) Q Consensus 241 ~fgVPp~~l~~~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~ 320 (378) +|||||++|+|+++|++.++|+++||.||+++||++||++||++.++..|++..++.++.|+.+.++++|.+++++++.+ T Consensus 241 ~fgvPp~~l~g~~~e~~~~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~ 320 (378) T protein:vir:94 241 GYFMNENILLGTATQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) T ss_pred HhCCCHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecchhhhcCHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 321 NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 321 ~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++||+|+||+|+++|+||+||||++++|+|++|++.++++++++++.++++|+||| T Consensus 321 ~~~~G~~t~NE~R~~~g~~p~~ggd~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 321 NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGNRKDVTSTDETNNQ 378 (378) T ss_pred HHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccchhcchhcccccCCCCCCCCCCCC Confidence 9999999999999999999999999999999999999999999999999999999999 No 6 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=4e-86 Score=488.76 Aligned_cols=361 Identities=17% Similarity=0.184 Sum_probs=291.9 Q ss_pred CCccccccccccccc---------cCCccceee---------cccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL---------NNDTQRVTA---------WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) Q Consensus 1 M~~f~~~~~~~~~~~---------~~~~~~~~~---------~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 62 (378) ||||+++.++..... +.....+.. ..+...++++++||+||++||++||++||++|+++.++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999999865432110 100001101 11233467889999999999999999999999987553 Q ss_pred cccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------- Q lcl|Aclame:pro 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------- 127 (378) Q Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------- 127 (378) ..+..+|++++||+.+||++||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 81 -----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~i~~~~v~v~~d~~~~~~ 154 (432) T protein:vir:10 81 -----IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIE-FDRKGKVQALWPIDASKVTVYIDDVGLLN 154 (432) T ss_pred -----eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEEcCccccc Confidence 345689999999999999999999999999999999999999987 67889998888742 Q ss_pred -------------CeEEEeeeEEEEEcc--ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCH Q lcl|Aclame:pro 128 -------------DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDI 181 (378) Q Consensus 128 -------------~~~~~~~~dvih~r~--~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~ 181 (378) ..+.|+++||||||+ +.++..|.|++..+..++.. +.++++|+|+|++++.+++ T Consensus 155 ~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~ 234 (432) T protein:vir:10 155 SKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNE 234 (432) T ss_pred ccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCH Confidence 124578999999995 45556689999888776643 3467899999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--h Q lcl|Aclame:pro 182 DNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--S 254 (378) Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~ 254 (378) ++.++++++|++.+.+ ..|+++++++++|++|++++++++++++ +.+++++++||++|||||++|+ +++ . T Consensus 235 e~~~~~~~~~~~~~~g---~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~ 311 (432) T protein:vir:10 235 DAKKVFRENFESMSSG---LQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNI 311 (432) T ss_pred HHHHHHHHHHHHHhcc---cccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccH Confidence 8877777777666542 2678899999999999999999999995 5678999999999999999995 343 4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 255 QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLV 334 (378) Q Consensus 255 e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~ 334 (378) |++.++|+++||.|++++||++||++||++.++..|+ .+.||.+.+++.|.+++++++.+++++||+|+||+|+ T Consensus 312 e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~------~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~ 385 (432) T protein:vir:10 312 EQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGF------YSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARS 385 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCc------EEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 7889999999999999999999999999998876653 3667888999999999999999999999999999999 Q ss_pred HhCCCCCCCCCeeeecccceecccchhcc--CccCCCC---CCCCCC Q lcl|Aclame:pro 335 KMGEQPIEGGDVYIANLNAVAVKNLSDLQ--GSRKDVT---STDETN 376 (378) Q Consensus 335 ~~gl~p~~gGD~~~~~~n~~~~~~~~~~~--~~~~~~~---~~~e~~ 376 (378) ++||||+||||++++|+|++|++.+++.+ +++++.+ +++|+| T Consensus 386 ~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 386 KEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 99999999999999999999998765542 2332222 223333 No 7 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=4e-86 Score=488.76 Aligned_cols=361 Identities=17% Similarity=0.184 Sum_probs=291.9 Q ss_pred CCccccccccccccc---------cCCccceee---------cccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL---------NNDTQRVTA---------WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) Q Consensus 1 M~~f~~~~~~~~~~~---------~~~~~~~~~---------~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 62 (378) ||||+++.++..... +.....+.. ..+...++++++||+||++||++||++||++|+++.++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999999865432110 100001101 11233467889999999999999999999999987553 Q ss_pred cccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------- Q lcl|Aclame:pro 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------- 127 (378) Q Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------- 127 (378) ..+..+|++++||+.+||++||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 81 -----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~i~~~~v~v~~d~~~~~~ 154 (432) T protein:vir:10 81 -----IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIE-FDRKGKVQALWPIDASKVTVYIDDVGLLN 154 (432) T ss_pred -----eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEEcCccccc Confidence 345689999999999999999999999999999999999999987 67889998888742 Q ss_pred -------------CeEEEeeeEEEEEcc--ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCH Q lcl|Aclame:pro 128 -------------DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDI 181 (378) Q Consensus 128 -------------~~~~~~~~dvih~r~--~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~ 181 (378) ..+.|+++||||||+ +.++..|.|++..+..++.. +.++++|+|+|++++.+++ T Consensus 155 ~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~ 234 (432) T protein:vir:10 155 SKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNE 234 (432) T ss_pred ccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCH Confidence 124578999999995 45556689999888776643 3467899999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--h Q lcl|Aclame:pro 182 DNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--S 254 (378) Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~ 254 (378) ++.++++++|++.+.+ ..|+++++++++|++|++++++++++++ +.+++++++||++|||||++|+ +++ . T Consensus 235 e~~~~~~~~~~~~~~g---~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~ 311 (432) T protein:vir:10 235 DAKKVFRENFESMSSG---LQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNI 311 (432) T ss_pred HHHHHHHHHHHHHhcc---cccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccH Confidence 8877777777666542 2678899999999999999999999995 5678999999999999999995 343 4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 255 QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLV 334 (378) Q Consensus 255 e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~ 334 (378) |++.++|+++||.|++++||++||++||++.++..|+ .+.||.+.+++.|.+++++++.+++++||+|+||+|+ T Consensus 312 e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~------~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~ 385 (432) T protein:vir:10 312 EQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGF------YSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARS 385 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCc------EEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 7889999999999999999999999999998876653 3667888999999999999999999999999999999 Q ss_pred HhCCCCCCCCCeeeecccceecccchhcc--CccCCCC---CCCCCC Q lcl|Aclame:pro 335 KMGEQPIEGGDVYIANLNAVAVKNLSDLQ--GSRKDVT---STDETN 376 (378) Q Consensus 335 ~~gl~p~~gGD~~~~~~n~~~~~~~~~~~--~~~~~~~---~~~e~~ 376 (378) ++||||+||||++++|+|++|++.+++.+ +++++.+ +++|+| T Consensus 386 ~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 386 KEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 99999999999999999999998765542 2332222 223333 No 8 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=4e-86 Score=488.76 Aligned_cols=361 Identities=17% Similarity=0.184 Sum_probs=291.9 Q ss_pred CCccccccccccccc---------cCCccceee---------cccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL---------NNDTQRVTA---------WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) Q Consensus 1 M~~f~~~~~~~~~~~---------~~~~~~~~~---------~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 62 (378) ||||+++.++..... +.....+.. ..+...++++++||+||++||++||++||++|+++.++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 80 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG 80 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999999865432110 100001101 11233467889999999999999999999999987553 Q ss_pred cccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------- Q lcl|Aclame:pro 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------- 127 (378) Q Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------- 127 (378) ..+..+|++++||+.+||++||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 81 -----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~i~~~~v~v~~d~~~~~~ 154 (432) T protein:vir:10 81 -----IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIE-FDRKGKVQALWPIDASKVTVYIDDVGLLN 154 (432) T ss_pred -----eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEEcCccccc Confidence 345689999999999999999999999999999999999999987 67889998888742 Q ss_pred -------------CeEEEeeeEEEEEcc--ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCH Q lcl|Aclame:pro 128 -------------DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDI 181 (378) Q Consensus 128 -------------~~~~~~~~dvih~r~--~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~ 181 (378) ..+.|+++||||||+ +.++..|.|++..+..++.. +.++++|+|+|++++.+++ T Consensus 155 ~~~~~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~ 234 (432) T protein:vir:10 155 SKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNE 234 (432) T ss_pred ccceEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCH Confidence 124578999999995 45556689999888776643 3467899999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--h Q lcl|Aclame:pro 182 DNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--S 254 (378) Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~ 254 (378) ++.++++++|++.+.+ ..|+++++++++|++|++++++++++++ +.+++++++||++|||||++|+ +++ . T Consensus 235 e~~~~~~~~~~~~~~g---~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~ 311 (432) T protein:vir:10 235 DAKKVFRENFESMSSG---LQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNI 311 (432) T ss_pred HHHHHHHHHHHHHhcc---cccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccH Confidence 8877777777666542 2678899999999999999999999995 5678999999999999999995 343 4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHH Q lcl|Aclame:pro 255 QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLV 334 (378) Q Consensus 255 e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~ 334 (378) |++.++|+++||.|++++||++||++||++.++..|+ .+.||.+.+++.|.+++++++.+++++||+|+||+|+ T Consensus 312 e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~------~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~ 385 (432) T protein:vir:10 312 EQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGF------YSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARS 385 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCc------EEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHH Confidence 7889999999999999999999999999998876653 3667888999999999999999999999999999999 Q ss_pred HhCCCCCCCCCeeeecccceecccchhcc--CccCCCC---CCCCCC Q lcl|Aclame:pro 335 KMGEQPIEGGDVYIANLNAVAVKNLSDLQ--GSRKDVT---STDETN 376 (378) Q Consensus 335 ~~gl~p~~gGD~~~~~~n~~~~~~~~~~~--~~~~~~~---~~~e~~ 376 (378) ++||||+||||++++|+|++|++.+++.+ +++++.+ +++|+| T Consensus 386 ~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 386 KEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 99999999999999999999998765542 2332222 223333 No 9 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=6.5e-86 Score=487.59 Aligned_cols=361 Identities=17% Similarity=0.211 Sum_probs=293.4 Q ss_pred CCccccccccccccc------cCCccceeec---------ccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL------NNDTQRVTAW---------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGS 65 (378) Q Consensus 1 M~~f~~~~~~~~~~~------~~~~~~~~~~---------~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~ 65 (378) ||||.++.+|.+... +.....+..+ .+...++++++|++||++||++||++||++|+++.++ T Consensus 1 M~~~~~~f~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~l~~~~~~~~~~~--- 77 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYG--- 77 (429) T ss_pred CchhhhhhcccccCcccccccCCChHHHHHHhcCCCCcceechhhhhccHHHHHHHHHHHHhhccCceEEEEecCCc--- Confidence 999999877644211 1111111111 1233567889999999999999999999999986543 Q ss_pred ccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC------------------ Q lcl|Aclame:pro 66 DTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------------ 127 (378) Q Consensus 66 ~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~------------------ 127 (378) ..+..+|++++||+.+|||+||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 78 --~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~~~ 154 (429) T protein:vir:10 78 --IQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIE-FDRKGKVQALWPIDASKVTVYIDDVGLLNSKT 154 (429) T ss_pred --eeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEEcCcccccccc Confidence 345789999999999999999999999999999999999999987 67889998888742 Q ss_pred ----------CeEEEeeeEEEEEcc--ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHH Q lcl|Aclame:pro 128 ----------DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNT 184 (378) Q Consensus 128 ----------~~~~~~~~dvih~r~--~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~ 184 (378) .++.|+++||||||. +.++..|.||+..+..++.. +.++++|+|+|++++.+++++. T Consensus 155 ~~~~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~ 234 (429) T protein:vir:10 155 KMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAK 234 (429) T ss_pred eEEEEEccCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHH Confidence 134578899999995 44556688999888776643 3467899999999999999987 Q ss_pred HHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--hHHH Q lcl|Aclame:pro 185 QEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--SQEQ 257 (378) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~e~~ 257 (378) ++++++|++.+.+ ..|+++++++++|++|++++++++++++ +.+++.+++||++|||||++|+ +++ .+++ T Consensus 235 ~~~~~~~~~~~~g---~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~ 311 (429) T protein:vir:10 235 KVFRENFESMSSG---LQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQ 311 (429) T ss_pred HHHHHHHHHHhcc---ccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHH Confidence 7777777766542 2678899999999999999999999995 5678999999999999999995 333 3788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhC Q lcl|Aclame:pro 258 QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMG 337 (378) Q Consensus 258 ~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g 337 (378) .++|++.||.||+++||++||++||++.++..|+ .++||.+.+++.|.+++++++.+++++||+|+||+|+++| T Consensus 312 ~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g 385 (429) T protein:vir:10 312 QQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGF------YSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKED 385 (429) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCc------EEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhC Confidence 9999999999999999999999999998876553 3567788999999999999999999999999999999999 Q ss_pred CCCCCCCCeeeecccceecccchhc--cCccCCCC---CCCCCC Q lcl|Aclame:pro 338 EQPIEGGDVYIANLNAVAVKNLSDL--QGSRKDVT---STDETN 376 (378) Q Consensus 338 l~p~~gGD~~~~~~n~~~~~~~~~~--~~~~~~~~---~~~e~~ 376 (378) +||+||||++++|+|++|++.+++. ++++++.+ +++|+| T Consensus 386 l~p~~ggD~~~~~~n~~~~d~~~~~~~k~g~~~~~~~~~~~e~~ 429 (429) T protein:vir:10 386 LPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 429 (429) T ss_pred CCCCCCcCeeeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 9999999999999999999876543 23333332 233333 No 10 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=1.4e-84 Score=480.37 Aligned_cols=355 Identities=13% Similarity=0.093 Sum_probs=283.5 Q ss_pred CCcccccccccccc---------ccCCccce----eecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK---------LNNDTQRV----TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) Q Consensus 1 M~~f~~~~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~ 67 (378) =|||+++.++..+. .++..... ....+...++..++||+||++||++||++||++|+++++++. T Consensus 14 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~~~~--- 90 (424) T protein:vir:18 14 NGWWARLQSWFVGGRLVTPNQGSQTGPVSAHGHLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQNDNR--- 90 (424) T ss_pred CchHHHHHhhhcccccccccccccccccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeecCCce--- Confidence 46666665533211 11110000 011233456788899999999999999999999998876542 Q ss_pred ceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC-------------------- Q lcl|Aclame:pro 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD-------------------- 127 (378) Q Consensus 68 ~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~-------------------- 127 (378) .....+||+++||+.+||++||+++||+.++.+++++||||++++ ++..|+++++||.. T Consensus 91 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~pl~~~~V~v~~~~~~~~y~~~~~ 169 (424) T protein:vir:18 91 KKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVD-RNSAGDVISLLPLQSANMDVKLVGKKVVYRYQRD 169 (424) T ss_pred eeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEecCcceEEEEcCCeEEEEEEeC Confidence 223468999999999999999999999999999999999999987 67889999988732 Q ss_pred -CeEEEeeeEEEEEccc-cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCc-CCHHHHHHHHHHHHH Q lcl|Aclame:pro 128 -DKKEYKPEELVRLTSP-FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAF-LDIDNTQEYREKALT 193 (378) Q Consensus 128 -~~~~~~~~dvih~r~~-~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~-l~~~~~~~~~~~~~~ 193 (378) ..+.|+++||||||++ .++..|.||+..+++++.. +.++++|+|+++++.. +++++.+++++.|+ T Consensus 170 g~~~~~~~~eIih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~- 248 (424) T protein:vir:18 170 SEYADFSQKEIFHLKGFGFTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFK- 248 (424) T ss_pred CeEEEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHHHHHHHHH- Confidence 2346889999999963 4556689999988877653 3467889999999764 67776655555554 Q ss_pred HHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc--------cchHHHHHHHHHH Q lcl|Aclame:pro 194 TIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG--------TASQEQQIYFYNS 264 (378) Q Consensus 194 ~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~--------~~~e~~~~~f~~~ 264 (378) +..++.+++++++|++|++|++++++++++++ +.+++++++||++|||||++|+. ++.|++.++|+++ T Consensus 249 ---~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~ 325 (424) T protein:vir:18 249 ---EIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQY 325 (424) T ss_pred ---HHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHH Confidence 44567788999999999999999999999995 56789999999999999999962 3347889999999 Q ss_pred HHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) Q Consensus 265 ~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG 344 (378) ||.||++.||++||++||++.++. + ++ ++||.+.++++|.++|++++.+++++||||+||+|+++|+||+||| T Consensus 326 tl~P~~~~ie~~l~~~L~~~~~~~-~----~~--~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gG 398 (424) T protein:vir:18 326 TLQPYISRWENSIQRWLIPAKDVG-R----IH--AEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGG 398 (424) T ss_pred HHHHHHHHHHHHHHhhcCCccccC-C----eE--EEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Confidence 999999999999999999987653 2 33 5667789999999999999999999999999999999999999999 Q ss_pred CeeeecccceecccchhccCccCCCCCCC Q lcl|Aclame:pro 345 DVYIANLNAVAVKNLSDLQGSRKDVTSTD 373 (378) Q Consensus 345 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 373 (378) |++++|+|++|++.+++++.++++ +. T Consensus 399 D~~~~~~n~~~l~~~~~~~~p~~~---ga 424 (424) T protein:vir:18 399 DVAMRQSQYVPITDLGTNKEPRNN---GA 424 (424) T ss_pred CeeeeccCccchHhhhccCCCccC---CC Confidence 999999999999877654322221 11 No 11 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=1.3e-84 Score=480.45 Aligned_cols=353 Identities=14% Similarity=0.178 Sum_probs=286.4 Q ss_pred CCccccccccccccc--cC-Cccceeecc-----cchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL--NN-DTQRVTAWQ-----NEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMA 72 (378) Q Consensus 1 M~~f~~~~~~~~~~~--~~-~~~~~~~~~-----~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~ 72 (378) ||||++++++.+... .+ ....+..|. +...++.+++|++||++||++||++||++|+++.++ ..+.. T Consensus 1 MG~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~-----~~~~~ 75 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETVDMTNPLLLQWLGVDPDTPRNQLSEATYFACLKILSESLGKLPLKMYQKTERG-----IVKSD 75 (411) T ss_pred CchHHHHHhhccCcccccccchHHHHHHhcCcccChhhhhccHHHHHHHHHHHHhHhhCceeEEEecCCc-----eeeec Confidence 999999877543321 11 011111121 123456788999999999999999999999987653 34567 Q ss_pred CchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC------------------------- Q lcl|Aclame:pro 73 GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------------------- 127 (378) Q Consensus 73 ~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~------------------------- 127 (378) +|++++||+.+||++||+++||+.++.+++++||||+++++ + .|++.++||.. T Consensus 76 ~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r-~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 153 (411) T protein:vir:81 76 REELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQY-S-GPQLQALWILPSQYVTIVVDDRGLLGEKNAIWYRYN 153 (411) T ss_pred ccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEe-c-CCceEEEEEECCceEEEEEcCcccccccceEEEEEE Confidence 89999999999999999999999999999999999999874 4 47887776521 Q ss_pred -----CeEEEeeeEEEEEcc--ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHH Q lcl|Aclame:pro 128 -----DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYRE 189 (378) Q Consensus 128 -----~~~~~~~~dvih~r~--~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~ 189 (378) ..+.|+++||||||. +.++..|.||+..+..++.. +.+++.|+|+|++++.+++++.+++++ T Consensus 154 ~~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~ 233 (411) T protein:vir:81 154 DPYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDLNQEARDRLVK 233 (411) T ss_pred ecCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHH Confidence 234578899999984 44566788999888776643 346788999999999999998877777 Q ss_pred HHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--hHHHHHHHH Q lcl|Aclame:pro 190 KALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--SQEQQIYFY 262 (378) Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~e~~~~~f~ 262 (378) +|++.++ +..|+++++++++|++|++++++++++++ +.+++.+++||++|||||++|+ +++ .|++.++|+ T Consensus 234 ~~~~~~~---g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~ 310 (411) T protein:vir:81 234 GFEQFAN---GSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEAQNLAFY 310 (411) T ss_pred HHHHHhc---CccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHHHHHHHH Confidence 7777654 22578899999999999999999999996 5568999999999999999995 333 478889999 Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC Q lcl|Aclame:pro 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE 342 (378) Q Consensus 263 ~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ 342 (378) ++||.|++++||++||++||++.++..++ .++||.+.+++.|.+++++++.+++++||+|+||+|+++|+||+| T Consensus 311 ~~~l~P~~~~ie~~l~~~ll~~~~~~~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ 384 (411) T protein:vir:81 311 VDTLLYVLKQYEEEITYKILSNDLISQGH------YFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADD 384 (411) T ss_pred HHHHHHHHHHHHHHHHhhcCChhhcCCCc------EEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 99999999999999999999998876543 366788899999999999999999999999999999999999999 Q ss_pred CCCeeeecccceecccchhccCccCCCCCCCCC Q lcl|Aclame:pro 343 GGDVYIANLNAVAVKNLSDLQGSRKDVTSTDET 375 (378) Q Consensus 343 gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~ 375 (378) |||++++++|++|++.++++.. +++|. T Consensus 385 ggD~~~~~~n~~pl~~~~~~~~------kgGd~ 411 (411) T protein:vir:81 385 YGNNLMANGNYIPLSMLGANYG------KGGDS 411 (411) T ss_pred CCCeeeeccCccchhhhhhhhc------cCCCC Confidence 9999999999999987654321 22222 No 12 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=2.3e-84 Score=479.12 Aligned_cols=353 Identities=16% Similarity=0.175 Sum_probs=285.3 Q ss_pred CCccccccccccccc------------cCCcccee--------ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL------------NNDTQRVT--------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKK 60 (378) Q Consensus 1 M~~f~~~~~~~~~~~------------~~~~~~~~--------~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 60 (378) ||||++..+..+... ......+. ...+...++.+++|++||++||++||++|+++|+... T Consensus 1 MG~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~al~~~~v~~ci~~ia~~iA~lp~~~~~~~~ 80 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNYDEDIGIDISDSNFWEKFGIKLNFSVRGKRALKENTVYVCTKIRAESIGKLSLKIYKDKE 80 (422) T ss_pred CchhhhhhhccCCccchhhhhhhccccccCcchhhhhccccCCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEecCc Confidence 999998754322110 00000000 0112334578899999999999999999999998542 Q ss_pred cccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC------------- Q lcl|Aclame:pro 61 SDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------- 127 (378) Q Consensus 61 ~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~------------- 127 (378) ...+|+++++|+.+|||+||+++||+.++.+++++||||++++ ++..|++.+++|.. T Consensus 81 ---------~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~G~~~~L~~i~~~~v~~~~~~~~~ 150 (422) T protein:vir:13 81 ---------EYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIE-RDRKGKIIGLYPINSDNVTKIIDDDNF 150 (422) T ss_pred ---------ccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEECCcceEEEEcCCcc Confidence 2467999999999999999999999999999999999999987 67789998887731 Q ss_pred ----------------CeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCc Q lcl|Aclame:pro 128 ----------------DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAF 178 (378) Q Consensus 128 ----------------~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~ 178 (378) .++.|+++||||+|.+ .++..|.|++..+..++.. +.++++|+|+|++++. T Consensus 151 ~~~~~~~~y~~~~~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ 230 (422) T protein:vir:13 151 LSSLSKVWYVVTDKNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGD 230 (422) T ss_pred eeccceEEEEEEeCCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCC Confidence 2235778999999853 4455688999888776643 3467789999999999 Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc----c- Q lcl|Aclame:pro 179 LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG----T- 252 (378) Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~----~- 252 (378) +++++.++++++|++.+++ ..++++++++++|++|++++++++++++ +.+++.+++||++|||||++|++ + T Consensus 231 l~~e~~~~~~~~~~~~~~g---~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~ 307 (422) T protein:vir:13 231 LDEKAKKIFKKEFESMSNG---LENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATF 307 (422) T ss_pred CCHHHHHHHHHHHHHHhcC---ccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc Confidence 9999887777777766532 2578899999999999999999999995 55789999999999999999963 2 Q ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHH Q lcl|Aclame:pro 253 -ASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQ 331 (378) Q Consensus 253 -~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE 331 (378) +.+++..+|+++||.|++++||++||++||++.++..|+ .++||.+.++++|.+++++++.+++++|++|+|| T Consensus 308 sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~------~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE 381 (422) T protein:vir:13 308 NNLTEQQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDV------KAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANE 381 (422) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCc------eEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHH Confidence 347889999999999999999999999999998775543 3567788999999999999999999999999999 Q ss_pred HHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 332 LLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 332 ~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +|+++|+||+||||++++|+|++|++.+++++ .+++|.++| T Consensus 382 ~R~~~gl~p~~ggD~~~~~~n~~~l~~~~~~~------~~~g~~~g~ 422 (422) T protein:vir:13 382 ARRRENLPPVEGGDRLLVNGNMIPIEMAGEQY------KKGGEKGGK 422 (422) T ss_pred HHHHhCCCCCCCcCeeeeccCccchhhccccc------ccCCCcCCC Confidence 99999999999999999999999998776432 233344444 No 13 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=2.6e-84 Score=478.85 Aligned_cols=357 Identities=13% Similarity=0.141 Sum_probs=285.1 Q ss_pred CCccccccccccccc-------------cCCcc--ce-----eecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL-------------NNDTQ--RV-----TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKK 60 (378) Q Consensus 1 M~~f~~~~~~~~~~~-------------~~~~~--~~-----~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 60 (378) ||+|++.+++..... +.... +. ....+...++.+++||+||++||++||++||++|+++. T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:10 7 LGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTP 86 (432) T ss_pred cchhhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHhhhhCceeEEEecC Confidence 999999877653321 00000 00 01112334677899999999999999999999999876 Q ss_pred cccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec-------------- Q lcl|Aclame:pro 61 SDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA-------------- 126 (378) Q Consensus 61 ~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~-------------- 126 (378) ++ ..+..+||+++||+.+||++||+++||+.++.+++++||||+++++ + .|++.++||. T Consensus 87 ~g-----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~-~-~g~~~~L~~l~~~~v~v~~~~~g~ 159 (432) T protein:vir:10 87 DG-----RKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVV-T-DGRIESLQYLANDRLTITTDTKGN 159 (432) T ss_pred CC-----cccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEe-c-CCcEEEEEEEcCCceEEEEcCCCc Confidence 54 2456789999999999999999999999999999999999999874 3 4788877763 Q ss_pred ---------CCeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHH Q lcl|Aclame:pro 127 ---------DDKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQ 185 (378) Q Consensus 127 ---------~~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~ 185 (378) +..+.|+++||||+|+ +.++..|+||+..+.+++.. +.+++.++|++++++.+++++.+ T Consensus 160 ~~y~~~~~~g~~~~~~~~~iih~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~ 239 (432) T protein:vir:10 160 TAYRYRRTDGQMIDIPKQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYD 239 (432) T ss_pred EEEEEEecCceEEEEcCccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHH Confidence 2234678899999995 45666789999988776643 44678999999999999987755 Q ss_pred HHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc----c-----chH Q lcl|Aclame:pro 186 EYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG----T-----ASQ 255 (378) Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~----~-----~~e 255 (378) + |++.|.+ ..+++++++|++|++|++++++++++++ +.+++.+++||++|||||++|+. + +.| T Consensus 240 ~----~~~~~~~---~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e 312 (432) T protein:vir:10 240 S----FAKKVSG---SVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIE 312 (432) T ss_pred H----HHHHHhh---hhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHH Confidence 4 5555542 3577899999999999999999999995 66799999999999999999962 2 247 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHH Q lcl|Aclame:pro 256 EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVK 335 (378) Q Consensus 256 ~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~ 335 (378) +++++|+++||.||+++||++||++||++.++. . ..++||.+.++++|.++|++++.+++++||||+||+|++ T Consensus 313 ~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~~-----~--~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~ 385 (432) T protein:vir:10 313 SQQLGFLSMTLSPWLRRIEQSIALNLLSPAERR-----R--YFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREI 385 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCccccC-----c--eEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHH Confidence 888999999999999999999999999987642 1 246778889999999999999999999999999999999 Q ss_pred hCCCCCCCCC-eeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 336 MGEQPIEGGD-VYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 336 ~gl~p~~gGD-~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +||||++||| .+++++|++|++.++++...+.....+++++|+ T Consensus 386 ~glppi~g~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~ 429 (432) T protein:vir:10 386 EGLPKLGGNAAVLTVQSAMVPLDSIGLQASPEPASGLGNQQQDK 429 (432) T ss_pred hCCCCCCCCcceEeecCcccchhhhcccCCCCCCCCCCCccccc Confidence 9999999875 556899999999876654444434444555555 No 14 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=4e-84 Score=477.79 Aligned_cols=355 Identities=13% Similarity=0.097 Sum_probs=282.2 Q ss_pred CCcccccccccccc---------ccCCccc--ee--ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK---------LNNDTQR--VT--AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) Q Consensus 1 M~~f~~~~~~~~~~---------~~~~~~~--~~--~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~ 67 (378) =|||++.+++..+. .+..... +. ...+...++..++||+||++||++||++||++|+..++++.. T Consensus 14 ~g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~vy~~~~~~~~~-- 91 (424) T protein:vir:18 14 NGWWARLKSWFVGGRLVTPNQGSQTGPVSAHGYLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQNDNRK-- 91 (424) T ss_pred CchHHHHHhhccccccccccchhhccccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeccCCcee-- Confidence 34444444432221 1111000 00 112334567788999999999999999999999988775422 Q ss_pred ceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC-------------------- Q lcl|Aclame:pro 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD-------------------- 127 (378) Q Consensus 68 ~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~-------------------- 127 (378) ....+||+++||+.+||++||+++||+.++.+++++||||++++ |+..|+++++||.. T Consensus 92 -~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~l~~~~v~v~~~~~~~~y~~~~~ 169 (424) T protein:vir:18 92 -KVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVD-RNSAGDVISLLPLQSANMDVKLVGKKVVYRYQRD 169 (424) T ss_pred -eeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEecCcceEEEEcCCeEEEEEEeC Confidence 23368999999999999999999999999999999999999987 67889999998732 Q ss_pred -CeEEEeeeEEEEEccc-cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCc-CCHHHHHHHHHHHHH Q lcl|Aclame:pro 128 -DKKEYKPEELVRLTSP-FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAF-LDIDNTQEYREKALT 193 (378) Q Consensus 128 -~~~~~~~~dvih~r~~-~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~-l~~~~~~~~~~~~~~ 193 (378) ..+.|+++||||+|++ .++..|.||+..+++++.. +.++++|+|+++++.. +++++.+++++.|+ T Consensus 170 g~~~~~~~~eVihir~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~- 248 (424) T protein:vir:18 170 SEYADFSQKEIFHLKGFGFTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFK- 248 (424) T ss_pred CeEEEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCCHHHHHHHHHHHH- Confidence 2346889999999963 4556789999988877653 3467899999999865 67776655555554 Q ss_pred HHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc--------cchHHHHHHHHHH Q lcl|Aclame:pro 194 TIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG--------TASQEQQIYFYNS 264 (378) Q Consensus 194 ~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~--------~~~e~~~~~f~~~ 264 (378) +..++.+++++++|++|++|++++++++++++ +.+++++++||++|||||++|+. ++.|++.++|+++ T Consensus 249 ---~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~ 325 (424) T protein:vir:18 249 ---EIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQY 325 (424) T ss_pred ---HHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHH Confidence 44566788999999999999999999999995 55789999999999999999962 2347889999999 Q ss_pred HHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) Q Consensus 265 ~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG 344 (378) ||.||+++||++||++||++.++. .++ ++||.+.++++|.++|++++.+++++|+||+||+|+++|+||+||| T Consensus 326 tl~P~~~~ie~~ln~~L~~~~~~~-----~~~--~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg 398 (424) T protein:vir:18 326 TLQPYISRWENSIQRWLIPSKDVG-----RLH--AEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGG 398 (424) T ss_pred HHHHHHHHHHHHHHhhcCCccccC-----CeE--EEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Confidence 999999999999999999987652 233 5667789999999999999999999999999999999999999999 Q ss_pred CeeeecccceecccchhccCccCCCCCCC Q lcl|Aclame:pro 345 DVYIANLNAVAVKNLSDLQGSRKDVTSTD 373 (378) Q Consensus 345 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 373 (378) |++++|+|++|++.+++++..+++ +. T Consensus 399 D~~~~~~n~~~l~~~~~~~~~~~n---~a 424 (424) T protein:vir:18 399 DVAMRQAQYVPITDLGTNKEPRNN---GA 424 (424) T ss_pred CeeeeccCccchhhhhccCCcccc---CC Confidence 999999999999877654432222 22 No 15 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=3.1e-84 Score=478.40 Aligned_cols=357 Identities=12% Similarity=0.131 Sum_probs=284.2 Q ss_pred CCccccccccccccc-------------cCCcc--cee-----ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL-------------NNDTQ--RVT-----AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKK 60 (378) Q Consensus 1 M~~f~~~~~~~~~~~-------------~~~~~--~~~-----~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 60 (378) ||||++.+++..... +.... +.. ...+...++.+++||+||++||++||++||++|++.. T Consensus 7 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:97 7 LGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAVAAMPLMMYMRTP 86 (432) T ss_pred CchhhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHhhccCceEEEEecC Confidence 999999887653211 00000 000 1112234667899999999999999999999999876 Q ss_pred cccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec-------------- Q lcl|Aclame:pro 61 SDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA-------------- 126 (378) Q Consensus 61 ~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~-------------- 126 (378) ++ ..+..+||+++||+.+||++||+++||+.++.+++++||||+++++ + .|++.++||. T Consensus 87 ~g-----~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~-~-~g~~~~L~~l~p~~v~v~~~~~g~ 159 (432) T protein:vir:97 87 DG-----RKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVV-T-DGRIESLQYLANDRLTITTDTKGN 159 (432) T ss_pred CC-----cccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEe-c-CCcEEEEEEEcCcceEEEEcCCCc Confidence 53 3456789999999999999999999999999999999999999875 3 3788887763 Q ss_pred ---------CCeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHH Q lcl|Aclame:pro 127 ---------DDKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQ 185 (378) Q Consensus 127 ---------~~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~ 185 (378) +..+.|+++||||+|+ +.++..|+||+..+.+++.. +.++++++|++++++.+++++.+ T Consensus 160 ~~y~~~~~~g~~~~~~~~~iih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~ 239 (432) T protein:vir:97 160 TAYRYRRTDGQMIDIPRQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYD 239 (432) T ss_pred EEEEEEecCceEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCCCCHHHHH Confidence 1234578899999995 45566789999988776643 34678999999999999987654 Q ss_pred HHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc---------cchH Q lcl|Aclame:pro 186 EYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG---------TASQ 255 (378) Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~---------~~~e 255 (378) +|++.|. +..+++++++|++|++|++++++++++++ +.+++++++||++|||||++|+. ++.| T Consensus 240 ----~~~~~~~---~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e 312 (432) T protein:vir:97 240 ----SFSKKVS---GSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIE 312 (432) T ss_pred ----HHHHHHh---hhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHH Confidence 4555554 23578899999999999999999999995 66799999999999999999962 2347 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHH Q lcl|Aclame:pro 256 EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVK 335 (378) Q Consensus 256 ~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~ 335 (378) ++.++|+++||.||++.||++||++||++.++. + ..++||.+.++++|.++|++++.+++++||||+||+|++ T Consensus 313 ~~~~~f~~~tl~P~~~~ie~~ln~kLl~~~e~~-~------~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~ 385 (432) T protein:vir:97 313 SQQLGFLTMTLSPWLRRIEQSIALNLLTPAERR-R------YFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREI 385 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCccccC-c------eEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHH Confidence 888999999999999999999999999987642 1 236677889999999999999999999999999999999 Q ss_pred hCCCCCCCCCe-eeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 336 MGEQPIEGGDV-YIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 336 ~gl~p~~gGD~-~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +|+||++|||. +++++|++|++.++.+...+.....+++++|+ T Consensus 386 ~glpp~~g~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~ 429 (432) T protein:vir:97 386 EGLPKLGGNAAVLTVQSAMVPLDSIGLQASPEPASGLGNQQQDK 429 (432) T ss_pred hCCCCCCCCcceEeecccccchhhhcccCCCCCCCCCCCccccc Confidence 99999998765 46899999998876654433333344444444 No 16 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=4.8e-84 Score=477.35 Aligned_cols=357 Identities=13% Similarity=0.144 Sum_probs=283.7 Q ss_pred CCccccccccccccc-------------cCCcccee-------ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL-------------NNDTQRVT-------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKK 60 (378) Q Consensus 1 M~~f~~~~~~~~~~~-------------~~~~~~~~-------~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 60 (378) ||||++.+.+..... +.....+. ...+...++.+++||+||++||++||++||++|+++. T Consensus 7 mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:81 7 LGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTP 86 (432) T ss_pred cchhhhhhhhcccccccccccccccccCccchhhhcccccccCcccchHhhhccHHHHHHHHHHHHhhhhCceeeEEecC Confidence 999999765432110 00000000 1112334678899999999999999999999999876 Q ss_pred cccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec-------------- Q lcl|Aclame:pro 61 SDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA-------------- 126 (378) Q Consensus 61 ~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~-------------- 126 (378) ++ ..+..+||+++||+.+||++||+++||+.++.+++++||||+++++ + .|++.++||. T Consensus 87 ~g-----~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~-~-~g~~~~L~~l~~~~v~v~~~~~g~ 159 (432) T protein:vir:81 87 DG-----RKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVV-T-DGRIESLQYLANDRLTITTDPKGN 159 (432) T ss_pred Cc-----ceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEe-c-CCcEEEEEEEcCCceEEEECCCCc Confidence 53 3456789999999999999999999999999999999999999874 3 3788887763 Q ss_pred ---------CCeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHH Q lcl|Aclame:pro 127 ---------DDKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQ 185 (378) Q Consensus 127 ---------~~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~ 185 (378) +..+.|+++||||||+ +.++..|+||+..+..+|.. +.+++.++|++++++.+++++.+ T Consensus 160 ~~y~~~~~~g~~~~~~~~~iih~r~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~ 239 (432) T protein:vir:81 160 TAYRYRRTDGQMIDIPKQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYD 239 (432) T ss_pred EEEEEEecCceEEEEccccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHH Confidence 1234678899999995 45566789999988877653 34678899999999999987755 Q ss_pred HHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc----c-----chH Q lcl|Aclame:pro 186 EYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG----T-----ASQ 255 (378) Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~----~-----~~e 255 (378) + |++.|+ +..+++++++|++|++|++++++++++++ +.+++++++||++|||||++|+. + +.| T Consensus 240 ~----~~~~~~---~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~e 312 (432) T protein:vir:81 240 S----FAKKVS---GSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIE 312 (432) T ss_pred H----HHHHHh---hhhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHH Confidence 4 444443 23578899999999999999999999995 56799999999999999999962 2 247 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHH Q lcl|Aclame:pro 256 EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVK 335 (378) Q Consensus 256 ~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~ 335 (378) +++++|+++||.||++.||++|+++||++.++. + ..++||.+.++++|.++|++++.+++++||||+||+|++ T Consensus 313 q~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~~~-~------~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~ 385 (432) T protein:vir:81 313 SQQLGFLTMTLSPWLRRIEQSIALNLLSPAERR-R------YFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREI 385 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccC-c------eEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHH Confidence 889999999999999999999999999987642 2 246778889999999999999999999999999999999 Q ss_pred hCCCCCCCCC-eeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 336 MGEQPIEGGD-VYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 336 ~gl~p~~gGD-~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +|+||+|||| .+++++|++|++..+++...+.....+++++++ T Consensus 386 ~glpp~~g~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~n~~~~~ 429 (432) T protein:vir:81 386 EGLPKLGGNAAVLTVQSAMVPLDSIGLQASPEPASGLGNQQQDK 429 (432) T ss_pred hCCCCCCCCcceEeecCcccchhhhccCCCCCCCCCCCCccccc Confidence 9999999875 556899999998876655444434444445555 No 17 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=5.8e-84 Score=476.90 Aligned_cols=361 Identities=12% Similarity=0.072 Sum_probs=286.5 Q ss_pred CCcccccccccccccc-CCcccee-----------ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLN-NDTQRVT-----------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) |.++.+..+..+.... +.+..+. ...+...++..++||+||++||++||++||++|+++++++ . T Consensus 1 m~~~~~~~~~~~~~s~~~~w~~~~~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~g~----~ 76 (421) T protein:vir:10 1 MFIPQMFEGKKRSVSGGGFWEAMLGGVRSSHSKAGVMITPETALALSAVRACVTLLAESVAQLPVELYRRDKNGG----R 76 (421) T ss_pred CCCcchhcccccccCcchhhHHHhhhhccCcccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCc----e Confidence 8888776544332111 1111110 1123445678899999999999999999999999887653 4 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------------C Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------------D 128 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------------~ 128 (378) .+..+|++++||+.+|||+||+++||+.++.+++++||||++++ ++..|++.++||.. . T Consensus 77 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~G~~~~L~~l~~~~v~v~~~~~g~~~y~~~~~ 155 (421) T protein:vir:10 77 QRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIID-RDGKGYPKELIPINPKKVIVLKGPDGMPYYEIPEI 155 (421) T ss_pred eecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEE-EcCCCcEEEEEEecCceEEEEECCCceEEEEEcCC Confidence 46789999999999999999999999999999999999999987 67789999988742 1 Q ss_pred eEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcC----CHHHHHHHHHHHH Q lcl|Aclame:pro 129 KKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFL----DIDNTQEYREKAL 192 (378) Q Consensus 129 ~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l----~~~~~~~~~~~~~ 192 (378) +..|++++|||+|+ +.++..|.||+..+..++.. +.++++|+|+|++++.+ ++++.++++++|+ T Consensus 156 g~~~~~~eiih~~~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~~~~~~~~ 235 (421) T protein:vir:10 156 GETLPMRMMHHVKVFSLDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKIDQLLAKWT 235 (421) T ss_pred CcEEchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHHHHHHHHHH Confidence 23578899999995 45556689999988877643 34678999999998766 5555555555555 Q ss_pred HHHHHhhcc-ccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--hHHHHHHHHHH Q lcl|Aclame:pro 193 TTIKNMQEG-SSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--SQEQQIYFYNS 264 (378) Q Consensus 193 ~~~~~~~~~-~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~e~~~~~f~~~ 264 (378) +.+ +| .++++++++++|++|++++++++++++ +.+++++++||++|||||.+|+ +++ .|++.++|+++ T Consensus 236 ~~~----~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~ 311 (421) T protein:vir:10 236 DRY----SGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATNNNIEHQGLQFVMY 311 (421) T ss_pred HHh----cCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCccccHHHHHHHHHHH Confidence 544 44 578899999999999999999999995 5679999999999999999996 333 47889999999 Q ss_pred HHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) Q Consensus 265 ~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG 344 (378) ||.|++++||++||++||++.++. + ..++||.+.++++|.+++++++.+++++|+||+||+|+++|+||+||| T Consensus 312 tl~P~~~~ie~~ln~kL~~~~~~~-~------~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gg 384 (421) T protein:vir:10 312 TLLAWLKRHEGALQRDLLLPSERR-D------LYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGG 384 (421) T ss_pred HHHHHHHHHHHHHhhhccCccccC-C------eEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Confidence 999999999999999999987742 2 236778889999999999999999999999999999999999999999 Q ss_pred CeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 345 DVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 345 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) |++++|+|+++++.....++... .+++.|.|+= T Consensus 385 D~~~~~~n~~~~~~~~~~~~~~~-~~~~~e~d~~ 417 (421) T protein:vir:10 385 DKYLTPLNMVDSAQIIPGDKKPT-AQQMAEIDTI 417 (421) T ss_pred ceeeeccccccccccccCCCCcc-cccCcccccc Confidence 99999999999887655443222 2233332222 No 18 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=4.8e-84 Score=477.35 Aligned_cols=362 Identities=12% Similarity=0.135 Sum_probs=284.9 Q ss_pred CCccccccccccccccCCcc----ceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQ----RVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDL 76 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l 76 (378) |++|+...+.....+..... ......+...++.+++||+||++||++||++||++|+++.++. .....+|++ T Consensus 17 ~~~~g~~~s~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp~~~~~~~~~g~----~~~~~~~~l 92 (437) T protein:vir:10 17 LKWLGVPISLTDGSFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLPLNLYQTKPDGT----RVLAKQHRL 92 (437) T ss_pred hhhcCCcccCCchhHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCceeEEEEcCCCc----eeeccccHH Confidence 55665554443321111000 0111122334578899999999999999999999999876542 345679999 Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec-----------------------CCeEEEe Q lcl|Aclame:pro 77 DEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA-----------------------DDKKEYK 133 (378) Q Consensus 77 ~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~-----------------------~~~~~~~ 133 (378) ++||+.+||++||+++||+.++.+++++||||++++ ++ .|+++++||. +..+.|+ T Consensus 93 ~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~-~g~~~~L~~l~p~~v~i~~~~~g~~~y~~~~~~g~~~~~~ 170 (437) T protein:vir:10 93 YTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKL-RS-AGVLIGLELMLPQRTTVKRLTSGALQYTYRNVDGTVSTLA 170 (437) T ss_pred HHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEE-ec-CCcEEEEEEEcCcceEEEECCCCeEEEEEEecCceEEEEc Confidence 999999999999999999999999999999999987 45 4888888773 1234578 Q ss_pred eeEEEEEccc-cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 134 PEELVRLTSP-FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEG 201 (378) Q Consensus 134 ~~dvih~r~~-~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (378) ++||||||++ .++..|.||+..+..++.. +.++++|+|+|++++.+++++.++++++|++.++ +. T Consensus 171 ~~dIih~r~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~---g~ 247 (437) T protein:vir:10 171 EDDVFHVRGFSLDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQKEKRAEIRTDLAEQFG---GA 247 (437) T ss_pred cccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHHHHHHHHHhc---Cc Confidence 8999999963 4566789999988877643 3467889999999999999988888888877654 23 Q ss_pred ccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc--------cchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 202 SSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG--------TASQEQQIYFYNSTIIPLLIQ 272 (378) Q Consensus 202 ~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~--------~~~e~~~~~f~~~~l~P~~~~ 272 (378) .|+++++++++|++|++++++++++++ +.+++++++||++|||||++|+. ++.|++.++|++.||.||+.+ T Consensus 248 ~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~tl~P~~~~ 327 (437) T protein:vir:10 248 MQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQTLGFLTFTLRPWLTR 327 (437) T ss_pred cccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHHH Confidence 678999999999999999999999995 56789999999999999999962 234788899999999999999 Q ss_pred HHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCe-eeecc Q lcl|Aclame:pro 273 LEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV-YIANL 351 (378) Q Consensus 273 ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~-~~~~~ 351 (378) ||++|+++||++.++.. ++ ++||.+.++++|.++|++++.+++++||+|+||+|+++|+||+||||. +++++ T Consensus 328 ie~~l~~kll~~~e~~~-----~~--~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~~~~~~~~ 400 (437) T protein:vir:10 328 IEQAARRSLLRPGERDQ-----FY--AEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAAVLTVQS 400 (437) T ss_pred HHHHHHhhccCccccCc-----eE--EEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcceEeecC Confidence 99999999999877532 23 567778999999999999999999999999999999999999998776 45899 Q ss_pred cceecccchhccCccC--CCCCCCCCCCC Q lcl|Aclame:pro 352 NAVAVKNLSDLQGSRK--DVTSTDETNNQ 378 (378) Q Consensus 352 n~~~~~~~~~~~~~~~--~~~~~~e~~~e 378 (378) |++|++..+++..... +..++.+.++| T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (437) T protein:vir:10 401 ALLPIDKLGEHTTATAAQDALKAWLYQEE 429 (437) T ss_pred cccchhhccCcCCCcchhccccccCCCCC Confidence 9999987665543221 11122222222 No 19 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=9.5e-84 Score=475.73 Aligned_cols=365 Identities=12% Similarity=0.083 Sum_probs=287.3 Q ss_pred CCcccccccccc---ccccCCccce---e----ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVSFSR---GKLNNDTQRV---T----AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~~~~---~~~~~~~~~~---~----~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) |+||+..++... ..+.....++ . ...+...++..++||+||++||++||++||++|+++++++ ... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g~----~~~ 76 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQVVPGGMRSSSSQAGVIITPETALALSAVRACVTLLAESVAQLPCVLYRRTENGG----REI 76 (419) T ss_pred CcchhhhccCCccccccccccccccccccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCc----eec Confidence 999987544311 1111100111 0 1112334577889999999999999999999999887653 345 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------------CeE Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------------DKK 130 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------------~~~ 130 (378) ..+|++++||+.+|||+||+++||+.++.+++++||||++++ ++..|+++++||.. .+. T Consensus 77 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~-r~~~G~~~~L~pl~~~~v~v~~~~~g~~~y~~~~~~~ 155 (419) T protein:vir:57 77 AFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLID-RNGRGDITELIPINPHKVIVLKGPDGMPYYDIPSIGE 155 (419) T ss_pred cccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCcceEEEECCCceEEEEEcCCce Confidence 679999999999999999999999999999999999999987 67889999998742 223 Q ss_pred EEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 131 EYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNM 198 (378) Q Consensus 131 ~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) .|++++|||+|+ +.++..|.|++..+..++.. +.++++|+|+|+.++..+++..++.++++++.|.+. T Consensus 156 ~~~~~~vih~r~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~~~~~~ 235 (419) T protein:vir:57 156 ILPMRMVHHIKSFSLDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAILAKWTER 235 (419) T ss_pred EEchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHHHHHHHH Confidence 578899999996 44556688999888876643 457789999999976655444445555555555555 Q ss_pred hcc-ccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--hHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 QEG-SSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--SQEQQIYFYNSTIIPLL 270 (378) Q Consensus 199 ~~~-~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~e~~~~~f~~~~l~P~~ 270 (378) ++| .|+++++++++|++|++++++++++++ +.+++++++||++|||||.+|+ +++ .|+++++|+++||.|++ T Consensus 236 ~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~ 315 (419) T protein:vir:57 236 YGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNNIEHQGLQYVIYTMLAIL 315 (419) T ss_pred hccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCccccHHHHHHHHHHHHHHHHH Confidence 555 678899999999999999999999996 5568999999999999999996 333 38899999999999999 Q ss_pred HHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeec Q lcl|Aclame:pro 271 IQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIAN 350 (378) Q Consensus 271 ~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~ 350 (378) ++||++|+++||++.++. + + .++||.+.+++.|.+++++++.+++++|+||+||+|+++|+||+||||++++| T Consensus 316 ~~ie~~l~~~ll~~~~~~-~----~--~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~ 388 (419) T protein:vir:57 316 KRHESAMMRDLLLPSERR-D----F--YIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDKYLTP 388 (419) T ss_pred HHHHHHHHhhccCccccC-C----e--EEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeec Confidence 999999999999987653 2 2 36677788999999999999999999999999999999999999999999999 Q ss_pred ccceecccchhccCccCCCC----CCCCCCC Q lcl|Aclame:pro 351 LNAVAVKNLSDLQGSRKDVT----STDETNN 377 (378) Q Consensus 351 ~n~~~~~~~~~~~~~~~~~~----~~~e~~~ 377 (378) +|+++++.+.+.+....+.. +.+...| T Consensus 389 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (419) T protein:vir:57 389 LNMVDSKALTGIGKATPQQLKDIEAILCTRN 419 (419) T ss_pred cccccccccccccCCCcccCcchhhhhhccC Confidence 99999887665433332222 2333333 No 20 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=1.6e-83 Score=474.44 Aligned_cols=358 Identities=13% Similarity=0.135 Sum_probs=282.7 Q ss_pred CCcccccccccc-cc----ccCCcc---cee---ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVSFSR-GK----LNNDTQ---RVT---AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~~~~-~~----~~~~~~---~~~---~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) +.||+....... .. .+.... +.+ ...+...++..++|++||++||++||++||++|+++.. +.+ T Consensus 16 ~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA~lp~~v~~~~~~-----~~~ 90 (424) T protein:vir:45 16 RVLLDALFRSKSLENPSTPITGDAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLSSSLAQMPLHVMRRHKG-----KVE 90 (424) T ss_pred hHHHHhhccccCCCCCccccchhhhhhhccccCCceechHHhhccHHHHHHHHHHHHHHhhCceEEEEecCC-----cee Confidence 555554422111 11 111100 000 11223455788899999999999999999999987533 334 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec---------------------CC Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA---------------------DD 128 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~---------------------~~ 128 (378) ++.+||+++||+.+|||+||+++||+.++.+++++||||++++ ++..|++++++|. ++ T Consensus 91 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~-r~~~G~~~~L~~l~~~~v~i~~~~~~~~y~~~~~~~ 169 (424) T protein:vir:45 91 PARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVK-RNRRGEVISLDCCMPWETTLMNTGGRYTYGLYNEYG 169 (424) T ss_pred ecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEE-EcCCCcEEEEEEecCceEEEEEcCCeEEEEEEecCc Confidence 6789999999999999999999999999999999999999987 6778999998874 23 Q ss_pred eEEEeeeEEEEEccc-cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 129 KKEYKPEELVRLTSP-FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIK 196 (378) Q Consensus 129 ~~~~~~~dvih~r~~-~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~ 196 (378) +..|+++||||||++ .++..|.||+..+.++|.. +.|+++|+|+|++++.+++++.+++++.|++.++ T Consensus 170 ~~~~~~~eVih~r~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~ 249 (424) T protein:vir:45 170 AFAISPDDMIHIRALGNNQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGLNKESWGWLKDQWQKASQ 249 (424) T ss_pred eEEECcccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhc Confidence 456889999999963 4456689999988877643 3467899999999999999988888888887765 Q ss_pred HhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--hHHHHHHHHHHHHHHH Q lcl|Aclame:pro 197 NMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--SQEQQIYFYNSTIIPL 269 (378) Q Consensus 197 ~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~e~~~~~f~~~~l~P~ 269 (378) +. ..|+|+++++++|++|++++++++++++ +.+++.+++||++|||||++|+ +++ .|++.++|+++||.|| T Consensus 250 g~--~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~ 327 (424) T protein:vir:45 250 AL--RRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSNISAQAIQFVRYTMMPW 327 (424) T ss_pred cc--cccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHH Confidence 32 2578899999999999999999999995 5679999999999999999996 333 3788999999999999 Q ss_pred HHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeee Q lcl|Aclame:pro 270 LIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIA 349 (378) Q Consensus 270 ~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~ 349 (378) +++||++||++||++.++..|+ .++||.+.++++|.++|++++.+++++||||+||+|+++|+||+||||++++ T Consensus 328 ~~~ie~~ln~kLl~~~e~~~g~------~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~~~ 401 (424) T protein:vir:45 328 VTNWEQELNRRLFTRAELAAGY------YVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEMLV 401 (424) T ss_pred HHHHHHHHHHhcCChhhhcCCc------EEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeee Confidence 9999999999999998876653 3667888999999999999999999999999999999999999999999999 Q ss_pred cccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 350 NLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 350 ~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) |+|+++... +.++...++.+. || T Consensus 402 ~~n~~~~~~--~~~~~~~~~~~~----~~ 424 (424) T protein:vir:45 402 SVNAANPAG--DFKPPKNDEGKT----NE 424 (424) T ss_pred ccccccccc--ccCCCCCCCCCC----CC Confidence 999986431 111111111111 11 No 21 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=2.8e-83 Score=473.16 Aligned_cols=352 Identities=16% Similarity=0.200 Sum_probs=281.9 Q ss_pred CCcccccccccc----------ccccCCccceeec-------ccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSR----------GKLNNDTQRVTAW-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~~~~~~~~----------~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) |+||+|-.-+.+ .........++.| .+...++.+++|++||++||++||++||++|++++ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~ia~~iA~lp~~~~~~~~--- 77 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--- 77 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhcccccccccccccCCccccccchhhhhccHHHHHHHHHHHHhHhhCceeEeeccc--- Confidence 999987211111 0111111111111 12345568899999999999999999999998653 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec----------------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA----------------- 126 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~----------------- 126 (378) ..+|++++||+.+||++||+++||+.++.+++++||||++++ |+..|++.+++|. T Consensus 78 -------~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~ 149 (412) T protein:vir:26 78 -------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQPSKLFLLNPDVVEMLIENQSRELY 149 (412) T ss_pred -------cccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEE-ECCCCcEEEEEEEcCceeEEEEeCCCcEEE Confidence 357999999999999999999999999999999999999986 6788988888762 Q ss_pred -------CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHHH---------HhcCCcceeeeeCCcCCHHHHHHHH Q lcl|Aclame:pro 127 -------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQTK---------LEQGKLRGLLKINAFLDIDNTQEYR 188 (378) Q Consensus 127 -------~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~~---------~~~~~~~gil~~~~~l~~~~~~~~~ 188 (378) +..+.|+++||||||++ .++..|.||+..+.+++... .++..+.++++.++.+++++.++++ T Consensus 150 y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~~~~~~~~~~~~i~~~~~~l~~e~~~~~~ 229 (412) T protein:vir:26 150 YSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVL 229 (412) T ss_pred EEEEcCCceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHHHHHHHH Confidence 12245789999999964 44556889998888776542 1233456788899999999988888 Q ss_pred HHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc------chHHHHHHH Q lcl|Aclame:pro 189 EKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT------ASQEQQIYF 261 (378) Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~------~~e~~~~~f 261 (378) ++|++.++ ++++++++++|++|++++++++++++ +.+++++++||++|||||++|++. ..|++.++| T Consensus 230 ~~~~~~~~------~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~sn~e~~~~~f 303 (412) T protein:vir:26 230 EDFKQYYE------ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFY 303 (412) T ss_pred HHHHHHhh------cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHH Confidence 88876543 56789999999999999999999995 557899999999999999999742 237888999 Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCC Q lcl|Aclame:pro 262 YNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPI 341 (378) Q Consensus 262 ~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~ 341 (378) +++||.|++++||++||++||++.++..+. .|+||.+.+++.|.+++++++++++++|++|+||+|+++|+||+ T Consensus 304 ~~~~l~P~~~~ie~~ln~kLl~~~~~~~~~------~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~ 377 (412) T protein:vir:26 304 LQHTLLPIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPV 377 (412) T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccccCcc------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 999999999999999999999998776543 36778889999999999999999999999999999999999999 Q ss_pred CCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 342 EGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 342 ~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ||||++++++|++|++...+.+ +..++|+++.+| T Consensus 378 ~ggD~~~~~~n~~~~~~~~~~~---~~~~gG~~n~~e 411 (412) T protein:vir:26 378 EGGDKPLISGDLYPIDTPLELR---KSLKGGDKNVNE 411 (412) T ss_pred CCcCeeeecccccccccchhhc---ccccCCCCCcCC Confidence 9999999999999998764443 333444455555 No 22 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=3.5e-83 Score=472.65 Aligned_cols=360 Identities=15% Similarity=0.178 Sum_probs=282.1 Q ss_pred CCcccccccccccc-ccCCc-------ccee----ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK-LNNDT-------QRVT----AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~~~~~~-~~~~~-------~~~~----~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) ||||+++....... ..... .+.. ...+...++.+++|++||++||++||++||++|+++.++ . T Consensus 1 Mg~f~~lf~r~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~-----~ 75 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTPAELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSL-----K 75 (414) T ss_pred CchhhhhhccCccCcccchhhHhHhhccCccccCCceechhhhhccHHHHHHHHHHHHHhccCceEEEEecCCc-----e Confidence 99999764332111 11000 0000 111223456789999999999999999999999987543 3 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec---------------------- Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA---------------------- 126 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~---------------------- 126 (378) ....+|++++||+.+||++||+++||+.++.+++++||||++++ ++ .|++.++||. T Consensus 76 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~-~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~ 153 (414) T protein:vir:44 76 QRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKV-KA-FGEVAELLPVDPGCVVPKLNSSWEPVYQVTFP 153 (414) T ss_pred eecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEE-eC-CCcEEEEEEEcCceEEEEECCCCcEEEEEEec Confidence 45679999999999999999999999999999999999999986 44 5888888763 Q ss_pred -CCeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHH Q lcl|Aclame:pro 127 -DDKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALT 193 (378) Q Consensus 127 -~~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~ 193 (378) +.++.|+++||||||+ +.++..|.|++..+..++.. +.+++.|+|++++++.+++++.++++++|++ T Consensus 154 ~g~~~~~~~~evih~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~ 233 (414) T protein:vir:44 154 DGSTDVLSQEDIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYERLKKDFEE 233 (414) T ss_pred CceEEEEccccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHHHHHH Confidence 2234578899999995 34556688999888776642 3467889999999999999988888888877 Q ss_pred HHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc----cc--hHHHHHHHHHHHH Q lcl|Aclame:pro 194 TIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG----TA--SQEQQIYFYNSTI 266 (378) Q Consensus 194 ~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~----~~--~e~~~~~f~~~~l 266 (378) .+++ ..|+++++++++|++|++++++++++++ +.+++++++||++|||||++|+. ++ .|++.+.|+++|| T Consensus 234 ~~~g---~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~~~l 310 (414) T protein:vir:44 234 RHTG---LGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSL 310 (414) T ss_pred HhcC---ccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHH Confidence 7642 2678899999999999999999999995 55789999999999999999963 32 3788899999999 Q ss_pred HHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCe Q lcl|Aclame:pro 267 IPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV 346 (378) Q Consensus 267 ~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~ 346 (378) .|++++||++||++||++.++. + + .++||.+.+++.|.+++++++++++++||||+||+|+++|+||+||||+ T Consensus 311 ~P~~~~ie~~ln~~L~~~~~~~-~----~--~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~ 383 (414) T protein:vir:44 311 VPYLTRIEQRINTGLVRKSKQG-V----F--YAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDV 383 (414) T ss_pred HHHHHHHHHHHHhhcCCccccC-c----e--EEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce Confidence 9999999999999999987642 2 2 3567788999999999999999999999999999999999999999999 Q ss_pred eeecccceecccchhccCccCCCCCCCCCCC Q lcl|Aclame:pro 347 YIANLNAVAVKNLSDLQGSRKDVTSTDETNN 377 (378) Q Consensus 347 ~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~ 377 (378) +++|+|+++....+...+.+.+..+.++..- T Consensus 384 ~~~~~n~~~~~~~~~~~~~~~~~~~~d~~~~ 414 (414) T protein:vir:44 384 YLTPMNMTTKPSDGSKAGKQKDNANADETTS 414 (414) T ss_pred ecccccccccCCccccCCCCCCCCCCCCCCC Confidence 9999999876543322221111111111111 No 23 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=4.7e-83 Score=471.95 Aligned_cols=361 Identities=13% Similarity=0.122 Sum_probs=280.3 Q ss_pred CCcccc---cccccccc----ccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccC Q lcl|Aclame:pro 1 MNLFGK---VVSFSRGK----LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAG 73 (378) Q Consensus 1 M~~f~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~ 73 (378) ..+|++ ..+.+... +.+.........+...++.+++|++||++||++||++||++|+++.++. .....+ T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp~~~~~~~~~g~----~~~~~~ 93 (434) T protein:vir:43 18 SSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLPLGVYERKADGS----RVDARS 93 (434) T ss_pred hhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEEcCCCc----cccccc Confidence 112221 11111100 0000000001122334578899999999999999999999999877653 345679 Q ss_pred chHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec-----------------------CCeE Q lcl|Aclame:pro 74 SDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA-----------------------DDKK 130 (378) Q Consensus 74 ~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~-----------------------~~~~ 130 (378) |++++||+.+||++||+++||+.++.+++++||+|++++ ++ .|++++++|. +..+ T Consensus 94 ~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-~~-~G~~~~L~~l~p~~v~~~~~~~g~~~y~~~~~~g~~~ 171 (434) T protein:vir:43 94 FPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIR-RA-AGRPAALDFLLPSRVDLECDENGRLKYFYTTKKGARR 171 (434) T ss_pred cHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEE-eC-CCcEEEEEEEcCcceEEEEcCCCeEEEEEEecCceEE Confidence 999999999999999999999999999999999999975 44 5888887763 2245 Q ss_pred EEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 131 EYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNM 198 (378) Q Consensus 131 ~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) .|+++||||+|+ +.++..|+||+..+++++.. +.+++.++|++++++.+++++.+++++.| ++. T Consensus 172 ~~~~~eVih~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~r~~~----~~~ 247 (434) T protein:vir:43 172 EIERTNMLHIPAFTLDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRILQPAQREEFREYV----KSV 247 (434) T ss_pred EEccccEEEecCcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCCCCHHHHHHHHHHH----HHh Confidence 688999999996 45566789999988877643 34678899999999999988766655555 444 Q ss_pred hccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc--------cchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 QEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG--------TASQEQQIYFYNSTIIPL 269 (378) Q Consensus 199 ~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~--------~~~e~~~~~f~~~~l~P~ 269 (378) .++.|+|+++++++|++|++++++++++++ +.+++++++||++|||||++|+. ++.+++.++|+++||.|| T Consensus 248 ~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~~~~~f~~~~L~P~ 327 (434) T protein:vir:43 248 SGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQMLAFLTFSISSI 327 (434) T ss_pred cCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHHHHHHHHHHHHHHH Confidence 566889999999999999999999999995 55789999999999999999962 234788999999999999 Q ss_pred HHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeee Q lcl|Aclame:pro 270 LIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIA 349 (378) Q Consensus 270 ~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~ 349 (378) +.+||++||++||++.++. + + .++||.+.++++|.++|++++.+++++||||+||+|+++|+||+||||++++ T Consensus 328 ~~~ie~~ln~kL~~~~~~~-~----~--~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~ 400 (434) T protein:vir:43 328 TNQIQQCVNKRLLTAPERI-R----Y--YAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKENLPELPGGDILTV 400 (434) T ss_pred HHHHHHHHHhhcCChhhhc-C----c--eEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEee Confidence 9999999999999987753 2 2 3567788999999999999999999999999999999999999999999999 Q ss_pred cccceecccchhccCccCCCCCCCC-----CCCC Q lcl|Aclame:pro 350 NLNAVAVKNLSDLQGSRKDVTSTDE-----TNNQ 378 (378) Q Consensus 350 ~~n~~~~~~~~~~~~~~~~~~~~~e-----~~~e 378 (378) |+|++|++.+++.+..+........ .-.| T Consensus 401 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 401 QSNLVPIDQLGQSNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred ccCccchhhhhccCCCcchhhhhhccCCCCCCCC Confidence 9999999887765544321111111 1111 No 24 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=7.2e-83 Score=470.92 Aligned_cols=353 Identities=13% Similarity=0.149 Sum_probs=287.6 Q ss_pred CCccccccccccccc-----c---CCcccee---ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL-----N---NDTQRVT---AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~~~~~~~-----~---~~~~~~~---~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) ||||++..+...... . ....+.. ...+...++..++|++||++||++||++||++|+++.. . T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~-------~ 73 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKISGIPSPAEDWAMHGDRPGANSAMTLGAFYACVTLLADTVASLSIDAYRKKDN-------V 73 (409) T ss_pred CchhhhhhcCCCcccccccccccccccchhhccCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEEecCC-------c Confidence 999997644221110 0 1111111 01123345677899999999999999999999986533 2 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC---------------------- Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------------- 127 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~---------------------- 127 (378) +...|++++||+.+|||+||+++||+.++.+++++||+|+++.+++..|++.++||.. T Consensus 74 ~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~~~~~ 153 (409) T protein:vir:84 74 RIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIEPVYR 153 (409) T ss_pred ccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEEEEec Confidence 3567999999999999999999999999999999999999988788899998888732 Q ss_pred -CeEEEeeeEEEEEccc-cC-CccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHH Q lcl|Aclame:pro 128 -DKKEYKPEELVRLTSP-FY-INEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALT 193 (378) Q Consensus 128 -~~~~~~~~dvih~r~~-~~-~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~ 193 (378) ++..|+++||||+|+. .. ...|.||+..+.+++.. +.++++|+|+|++++.+++++.++++++|.+ T Consensus 154 ~~g~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~ 233 (409) T protein:vir:84 154 IDGKVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADLTPDQVKQTQKQWIQ 233 (409) T ss_pred CCceEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHHH Confidence 2345788999999853 22 24588999888776643 3467899999999999999998888887765 Q ss_pred HHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc--------cchHHHHHHHHHH Q lcl|Aclame:pro 194 TIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG--------TASQEQQIYFYNS 264 (378) Q Consensus 194 ~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~--------~~~e~~~~~f~~~ 264 (378) .+ .|+++++++++|++|++++++++++++ +.+++++++||++|||||++|+. ++.|++.++|+++ T Consensus 234 ~~------~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~ 307 (409) T protein:vir:84 234 SH------HNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVRH 307 (409) T ss_pred Hh------ccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHH Confidence 43 457789999999999999999999995 56789999999999999999962 2247888999999 Q ss_pred HHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) Q Consensus 265 ~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG 344 (378) ||.||++.||++|+++|.. | ++ ++||.+.+++.|.+++++++.+++++||||+||+|+++|+||+||| T Consensus 308 ~l~P~~~~ie~~l~~~L~~------g----~~--i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~gg 375 (409) T protein:vir:84 308 TLLPWLRCIEQALDTFLPR------G----QF--VKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEG 375 (409) T ss_pred HHHHHHHHHHHHHHHhccC------C----Ce--EEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Confidence 9999999999999998831 2 23 5667789999999999999999999999999999999999999999 Q ss_pred CeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 345 DVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 345 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) |++++|+|++|++...+.+++++..+++..+.|| T Consensus 376 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~gn~ 409 (409) T protein:vir:84 376 DIHLQPMNFVPLGYVPPEEPAQEPQPNSATEGNK 409 (409) T ss_pred ceeeecccccccccCCccccCcCCCCCCccCCCC Confidence 9999999999999888888777766666666666 No 25 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=9.3e-83 Score=470.30 Aligned_cols=358 Identities=16% Similarity=0.176 Sum_probs=287.5 Q ss_pred Cccccccccccc-----cc-c--------CCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccc Q lcl|Aclame:pro 2 NLFGKVVSFSRG-----KL-N--------NDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) Q Consensus 2 ~~f~~~~~~~~~-----~~-~--------~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~ 67 (378) =||+++...... .+ . +.........+...++.+++||+||++||++||++||++|++++.+ T Consensus 1 m~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia~l~~~~~~~~~~~----- 75 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHEDGFNNILLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDDIAKLPIHTYKRTDGG----- 75 (416) T ss_pred CccchhcccccCccccCccchhHHHHhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCc----- Confidence 244443221111 00 0 0000000111223456789999999999999999999999976543 Q ss_pred ceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec--------------------- Q lcl|Aclame:pro 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA--------------------- 126 (378) Q Consensus 68 ~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~--------------------- 126 (378) ...+.+|+++++|+.+||++||+++||+.++.+++++||||++++ ++..|++.++||. T Consensus 76 ~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~-r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~ 154 (416) T protein:vir:12 76 IERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQ-FGSHGYPEALFPLRPDYTNAYVHPTTGMLWYQTV 154 (416) T ss_pred cccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEECCcceEEEEeCCCcEEEEEEe Confidence 345678999999999999999999999999999999999999987 6778889888863 Q ss_pred --CCeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHH Q lcl|Aclame:pro 127 --DDKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKAL 192 (378) Q Consensus 127 --~~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~ 192 (378) +.++.|+++||||+|+ +.++..|.||+..+..++.. +.+++.|+|+|++++.+++++.++++++|+ T Consensus 155 ~~g~~~~~~~~eiih~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~~~~~ 234 (416) T protein:vir:12 155 LNGKAIELYDYEVLHFKGLSTDGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAFLDEKPKENVRKEWK 234 (416) T ss_pred cCCeEEEecCccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHHHHHHHHHHHH Confidence 2345678999999995 44455688999888776642 346789999999999999988777776665 Q ss_pred HHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--hHHHHHHHHHHH Q lcl|Aclame:pro 193 TTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--SQEQQIYFYNST 265 (378) Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~e~~~~~f~~~~ 265 (378) .. .++++++++++|++|++++++++++++ +.+++++++||++|||||++|+ +++ .++++++|+++| T Consensus 235 ~~-------~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~ 307 (416) T protein:vir:12 235 RV-------NKVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQSIEYVRNT 307 (416) T ss_pred HH-------hcCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHHHHHHHHH Confidence 32 245789999999999999999999995 5679999999999999999996 343 368889999999 Q ss_pred HHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD 345 (378) Q Consensus 266 l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD 345 (378) |.|++++||++||++||++.++..|+ + ++||.+.+++.|.+++++++.+++++|++|+||+|+++|+||+|||| T Consensus 308 l~P~~~~ie~~l~~~l~~~~~~~~g~----~--i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd 381 (416) T protein:vir:12 308 LQPWIVNFEQELNVKLFLDHDQKSGH----Y--VKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGD 381 (416) T ss_pred HHHHHHHHHHHHHHhhcCchhhcCCc----e--EEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc Confidence 99999999999999999998876653 3 56677889999999999999999999999999999999999999999 Q ss_pred eeeecccceecccchhccCcc-CCCCCCCCCCCC Q lcl|Aclame:pro 346 VYIANLNAVAVKNLSDLQGSR-KDVTSTDETNNQ 378 (378) Q Consensus 346 ~~~~~~n~~~~~~~~~~~~~~-~~~~~~~e~~~e 378 (378) ++++|+|++|++...+++..+ .+..+++|++|| T Consensus 382 ~~~~~~n~~~~~~~~~~~~~~~~~~~~gge~~~~ 415 (416) T protein:vir:12 382 KYISSLNYVFLDFLEEYQRLKAGGAMKGGDNKNE 415 (416) T ss_pred eeeeccccccccccchhhccccccccCCCCCcCC Confidence 999999999999887766544 334567777777 No 26 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=6.6e-83 Score=471.11 Aligned_cols=351 Identities=16% Similarity=0.153 Sum_probs=281.4 Q ss_pred CCccccccccccccccCC----------ccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNND----------TQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) |-|.......+.....++ ..++. .+...++++++|++||++||++||++||++|+++. +..+ T Consensus 1 m~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~------~~~~ 72 (409) T protein:vir:10 1 MLFRKGFKNQSQEISIDDKKILEWLGINPSETY--VNGKSCLKQATVFGCIRILSDNISKLPIKIYQKKD------GIKR 72 (409) T ss_pred CcccccccCcCCCCCCChHHHHHHhcCCcCcce--echhhhhccHHHHHHHHHHHHhhhhCceEEEEecC------Ceee Confidence 774433332222111111 11111 12334678999999999999999999999998642 2234 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC----------------------- Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD----------------------- 127 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~----------------------- 127 (378) +.+|++++||+.+||++||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 73 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~y~ 151 (409) T protein:vir:10 73 VPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALD-FKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVWYL 151 (409) T ss_pred ccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEE-EcCCCcEEEEEEEcCCceEEEEcCCccccccceEEEE Confidence 678999999999999999999999999999999999999987 67889998887732 Q ss_pred ------CeEEEeeeEEEEEccc-cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHH Q lcl|Aclame:pro 128 ------DKKEYKPEELVRLTSP-FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYRE 189 (378) Q Consensus 128 ------~~~~~~~~dvih~r~~-~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~ 189 (378) ..+.|+++||||+|++ .++..|.||+..+.+++.. +.++++|+|+|++++.+++++.+++++ T Consensus 152 ~~~~~g~~~~~~~~evih~r~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~ 231 (409) T protein:vir:10 152 YTDDLGQRHKFMSDEILHFKGLTADGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAGDLNPEAEEVFKE 231 (409) T ss_pred EEeCCceeEEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHH Confidence 1235788999999953 4455688999888876643 446789999999999999988877777 Q ss_pred HHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----cc--chHHHHHHHH Q lcl|Aclame:pro 190 KALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GT--ASQEQQIYFY 262 (378) Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~--~~e~~~~~f~ 262 (378) +|++.+.+ ..|+++++++++|++|++++.+++++++ +.+++++++||++|||||.+|+ ++ +.++++++|+ T Consensus 232 ~~~~~~~g---~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~~~~f~ 308 (409) T protein:vir:10 232 NFERMSSG---LKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATHSNITEQNREFY 308 (409) T ss_pred HHHHHhcc---ccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccccHHHHHHHHH Confidence 77766542 2578899999999999999999999995 5578999999999999999995 23 3478899999 Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC Q lcl|Aclame:pro 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE 342 (378) Q Consensus 263 ~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ 342 (378) ++||.|++++||++||++||++.++..|+ .+.||.+.+++.|.+++++++.+++++||+|+||+|+++|+||+| T Consensus 309 ~~~l~P~~~~ie~~ln~kL~~~~~~~~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ 382 (409) T protein:vir:10 309 IDTLQSILNMYELEINYKLFLISEIKNGF------YSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLE 382 (409) T ss_pred HHHHHHHHHHHHHHHHHhhcCchhccCCc------EEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 99999999999999999999998876543 366777899999999999999999999999999999999999999 Q ss_pred CCCeeeecccceecccchhccCccCCCCCCCC Q lcl|Aclame:pro 343 GGDVYIANLNAVAVKNLSDLQGSRKDVTSTDE 374 (378) Q Consensus 343 gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e 374 (378) |||++++|+|++|++..+++. .+.|++ T Consensus 383 ggD~~~~~~n~~~~~~~~~~~-----~kgGe~ 409 (409) T protein:vir:10 383 GGDVLLINGNMIPVKMAGEQY-----SKGGEK 409 (409) T ss_pred CcCeeeeccCccchhhccccc-----cccCCC Confidence 999999999999998764321 111222 No 27 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=4.5e-83 Score=472.01 Aligned_cols=364 Identities=13% Similarity=0.112 Sum_probs=288.5 Q ss_pred Cccccc-ccccc-ccccC----------CccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 2 NLFGKV-VSFSR-GKLNN----------DTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 2 ~~f~~~-~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) =||.+. .+... ..++. .........+...++..++||+||++||++||++||++|+++.++ .. T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~-----~~ 75 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQMSAGGWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLPIELYERSGED-----RK 75 (419) T ss_pred CcccccccccccccccCcchhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCceEEEEecCCc-----cc Confidence 244442 22211 11110 001111122334567889999999999999999999999987543 34 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCC-------------------eE Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADD-------------------KK 130 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~-------------------~~ 130 (378) ++.+|+|++||+.+|||+||+++||+.++.+++++||||++++ ++..|++..+||... .. T Consensus 76 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~-r~~~G~~~~l~pl~~~~v~v~~~~~~~~~y~~~~~~ 154 (419) T protein:vir:14 76 PATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFID-RDSDGVIQGLYPLDNEAVTVMRGSDLKPVYRVRGSD 154 (419) T ss_pred cccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEecCceEEEEECCCceEEEEEccCc Confidence 6789999999999999999999999999999999999999987 677899999988531 11 Q ss_pred EEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 131 EYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNM 198 (378) Q Consensus 131 ~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) .++.++|+|+|+ +.++..|.||+..+..++.. +.|+++|+|+|++++.++.+..++.++++++.|++. T Consensus 155 ~~~~~~i~h~~~~~~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (419) T protein:vir:14 155 PMPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITDGWNAK 234 (419) T ss_pred ccchhheeEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHH Confidence 246789999996 45666789999888776643 346789999999998775444444455555555555 Q ss_pred hcc-ccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccch--HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 QEG-SSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTAS--QEQQIYFYNSTIIPLL 270 (378) Q Consensus 199 ~~~-~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~~--e~~~~~f~~~~l~P~~ 270 (378) ++| .|+++++++++|++|++++++++++++ +.+++++++||++|||||++|+ ++++ |+++++|+++||.|++ T Consensus 235 ~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~~E~~~~~f~~~~L~P~~ 314 (419) T protein:vir:14 235 FGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) T ss_pred hcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHH Confidence 555 578999999999999999999999995 5678999999999999999996 3333 8889999999999999 Q ss_pred HHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeec Q lcl|Aclame:pro 271 IQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIAN 350 (378) Q Consensus 271 ~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~ 350 (378) ++||++||++||++.++. + + .++||.+.++++|.++|++++.+++++||+|+||+|+++|+||+||||++++| T Consensus 315 ~~ie~~l~~kll~~~~~~-~----~--~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~ 387 (419) T protein:vir:14 315 KRHEQAKTRDLLLPSERK-Q----Y--FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) T ss_pred HHHHHHHhhhccCccccC-C----e--EEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeec Confidence 999999999999987753 2 2 36677789999999999999999999999999999999999999999999999 Q ss_pred ccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 351 LNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 351 ~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +|+++++..++.+.++.+..+++++.+. T Consensus 388 ~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) T protein:vir:14 388 MNMVDASKPQQLPVGKSEPTKAAIDEIG 415 (419) T ss_pred cccccccccccccCCCCCCccccccchh Confidence 9999998877766666655555555555 No 28 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=9.4e-83 Score=470.29 Aligned_cols=352 Identities=15% Similarity=0.200 Sum_probs=282.3 Q ss_pred CCccccccccc--c--ccccCCccceeec-------ccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVSFS--R--GKLNNDTQRVTAW-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~~~--~--~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) |++|+|.++-. + +...+....++.| .....++.+++|++||++||++||++||++|++++ T Consensus 4 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~V~~ci~~ia~~ia~lp~~~~~~~~--------- 74 (409) T protein:vir:96 4 ENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--------- 74 (409) T ss_pred ccchhhhhhHHhhhhhccccccccccccccCccccccchhhHhhhHHHHHHHHHHHHhhhhCceEEeeccc--------- Confidence 89999876531 1 1111111111111 12334678899999999999999999999998643 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC---------------------- Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------------- 127 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~---------------------- 127 (378) ..+|++++||+.+||++||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 75 -~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~ 152 (409) T protein:vir:96 75 -VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAA 152 (409) T ss_pred -ccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEE-ECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcC Confidence 357999999999999999999999999999999999999987 67889998888631 Q ss_pred --CeEEEeeeEEEEEcc--ccCCccccchHHHHHHHHHHH--------Hh-cCCcceeeeeCCcCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 128 --DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQTK--------LE-QGKLRGLLKINAFLDIDNTQEYREKALTT 194 (378) Q Consensus 128 --~~~~~~~~dvih~r~--~~~~~~~~~~~~~~~~~i~~~--------~~-~~~~~gil~~~~~l~~~~~~~~~~~~~~~ 194 (378) ..+.|+++||||||+ +.++..|.||+..+.+++... .+ +..+.++++.++.+++++.++++++|++. T Consensus 153 ~g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~ 232 (409) T protein:vir:96 153 TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQY 232 (409) T ss_pred CceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCCCCHHHHHHHHHHHHHH Confidence 234578899999995 344556889998887766532 12 23445688889999999988888888766 Q ss_pred HHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc------chHHHHHHHHHHHHH Q lcl|Aclame:pro 195 IKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT------ASQEQQIYFYNSTII 267 (378) Q Consensus 195 ~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~------~~e~~~~~f~~~~l~ 267 (378) ++ ++++++++++|++|++++++++++++ +.+++++++||++|||||++|++. +.|++.+.|+++||. T Consensus 233 ~~------n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~~~f~~~~l~ 306 (409) T protein:vir:96 233 YE------ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLL 306 (409) T ss_pred hh------cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHH Confidence 52 56789999999999999999999995 557899999999999999999742 247889999999999 Q ss_pred HHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCee Q lcl|Aclame:pro 268 PLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVY 347 (378) Q Consensus 268 P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~ 347 (378) |++++||++||++||++.++..|+ .++||.+.+++.|.+++++++.+++++|++|+||+|+++|+||+||||++ T Consensus 307 P~~~~ie~~l~~~Ll~~~~~~~g~------~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~ 380 (409) T protein:vir:96 307 PIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKP 380 (409) T ss_pred HHHHHHHHHHHhhcCCcccccCcc------eEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCccee Confidence 999999999999999998776553 36678889999999999999999999999999999999999999999999 Q ss_pred eecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 348 IANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 348 ~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++|+|++|++...+.+ +..++|+++.+| T Consensus 381 ~~~~n~~~~~~~~~~~---~~~~gG~~n~~e 408 (409) T protein:vir:96 381 LISGDLYPIDTPLELR---KSLKGGDKNVNE 408 (409) T ss_pred eecccccccccchhhc---ccccCCCCCcCC Confidence 9999999998764433 223334444444 No 29 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=2.3e-82 Score=468.18 Aligned_cols=348 Identities=10% Similarity=0.089 Sum_probs=276.9 Q ss_pred CCccccccccccccc---------------cCC--cccee------------------ecccchhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL---------------NND--TQRVT------------------AWQNEAVEYTSAFVTNIHNKIA 45 (378) Q Consensus 1 M~~f~~~~~~~~~~~---------------~~~--~~~~~------------------~~~~~~~~~~~~~v~~~i~~ia 45 (378) ||||++.+..+.... ..+ +..+. ...+...++.+++|++||++|| T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia 80 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS 80 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHHH Confidence 999998765332100 000 00000 0112234567789999999999 Q ss_pred hhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEee Q lcl|Aclame:pro 46 NEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLF 125 (378) Q Consensus 46 ~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~ 125 (378) ++||++||++|+++. +.....+|++++||+.+|||+||+++||+.++.+++++||||+++++ + .|.+++++| T Consensus 81 ~~iA~lp~~v~~~~~------~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r-~-~g~~~~L~p 152 (431) T protein:vir:10 81 GTIGMLPMNLISSDD------SKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVW-S-GNRPIRLIP 152 (431) T ss_pred HhhccCceEEEEecC------ceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEE-c-CCceEEEEE Confidence 999999999998742 22456789999999999999999999999999999999999999874 4 377888776 Q ss_pred c-----------------------CCeEEEeeeEEEEEccc-cCCccccchHHHHHHHHHH-----------HHhcCCcc Q lcl|Aclame:pro 126 A-----------------------DDKKEYKPEELVRLTSP-FYINEDTSILDNALASIQT-----------KLEQGKLR 170 (378) Q Consensus 126 ~-----------------------~~~~~~~~~dvih~r~~-~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~ 170 (378) . +..+.|+++||||||++ .++..|.||+..+.+++.. +.++++|+ T Consensus 153 l~~~~v~~~~~~~~~~~y~~~~~~g~~~~~~~~dViHir~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~ 232 (431) T protein:vir:10 153 MDRGSAKGRLTSTWQIVYDYTTPTGDKIELPAREVFHLRDLSIDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAG 232 (431) T ss_pred EcCceeEEEEcCCCeEEEEEEeCCceEEEEchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Confidence 3 23446788999999963 4566789999988877643 45678999 Q ss_pred eeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHh Q lcl|Aclame:pro 171 GLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENIL 249 (378) Q Consensus 171 gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l 249 (378) |+|++++.+++++.++++++|++.++ +..|+|+++++++|++|+++++++.++++ +.+++++++||++|||||++| T Consensus 233 gil~~~~~ls~e~~~~~~~~~~~~~~---g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~l 309 (431) T protein:vir:10 233 GAIEVPKELSDNAYGRMKASVQENHT---GSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLL 309 (431) T ss_pred EEEecCCCCCHHHHHHHHHHHHHHhc---CccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHh Confidence 99999999999988877777777664 23688999999999999999999999996 667999999999999999999 Q ss_pred cc------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHh Q lcl|Aclame:pro 250 LG------TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENIN 323 (378) Q Consensus 250 ~~------~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~ 323 (378) +. ++.|++.++|+++||.||+++||++||++||++.++. + ++ ++||.+.++++|.++|++.+.+++. T Consensus 310 g~~~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~-~----~~--~~fd~~~llr~d~~~r~~~~~~~~~ 382 (431) T protein:vir:10 310 MMDDTSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLG-Q----RQ--FKFNEGALLRGTLNDQAAFFSKALG 382 (431) T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhcC-C----ce--EEEechhhhccCHHHHHHHHHHHHh Confidence 73 2347889999999999999999999999999986653 2 23 5677789999999999999999997 Q ss_pred CC----CCCHHHHHHHhCCCCCCC--CCeeeecccceecccchhccCccCCCCCC Q lcl|Aclame:pro 324 GP----IFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSRKDVTST 372 (378) Q Consensus 324 ~G----~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 372 (378) +| |||+||+|+++||||++| ||++++|.|+.+.+...+.... + T Consensus 383 ~G~~~g~lT~NE~R~~~gl~p~~~~~gD~~~~p~n~~~~~~~~~~p~~------~ 431 (431) T protein:vir:10 383 AGGQSPWMKQNEVREMLDLPRADDPVADQLRNPMTQKQKGSGDEPPAT------T 431 (431) T ss_pred cccccCccCHHHHHHHhCCCCCCCccccceecccccccCCCCCCCCCC------C Confidence 66 499999999999999965 9999999998876533221111 1 No 30 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=1e-81 Score=464.58 Aligned_cols=355 Identities=15% Similarity=0.163 Sum_probs=282.5 Q ss_pred CCcccccccccccc---c-c------CCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK---L-N------NDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~~~~~~---~-~------~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) ++||+|........ + . .+..+.. .+...++..++|++||++||++||++||++|+++..+ ..+ T Consensus 4 ~~~f~r~~~~~~~~~~~~~~~~~~~~~~~~g~~--v~~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~-----~~~ 76 (413) T protein:vir:48 4 SGLFQRKSDAPVTTPAELAEAIGLSYDTYTGKR--ISSQRAMRLTAVYSCVRVLAESVGMLPCSLYKISGTL-----KTR 76 (413) T ss_pred chhhccCccCCccchHHHHHhhhcCcccccCce--echhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCc-----cee Confidence 67777643211100 0 0 0111111 1233456789999999999999999999999986542 346 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec-----------------------C Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA-----------------------D 127 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~-----------------------~ 127 (378) +.+|++++||+.+||++||+++||+.++.+++++||||+++++ + .|++.++||. + T Consensus 77 ~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~-~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~~g 154 (413) T protein:vir:48 77 VVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVK-A-LGEVVELLPIDPGCVEPKLNSQWQPVYQVTFPDG 154 (413) T ss_pred ecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEe-C-CCcEEEEEEEcCceEEEEEcCCceEEEEEEecCc Confidence 6899999999999999999999999999999999999999864 3 5888888873 2 Q ss_pred CeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 128 DKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTI 195 (378) Q Consensus 128 ~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~ 195 (378) ..+.|+++||||+|+ +.++..|.|++..+..++.. +.+++.|+|+|++++.+++++.++++++|++.+ T Consensus 155 ~~~~~~~~evih~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~~~e~~~~~~~~~~~~~ 234 (413) T protein:vir:48 155 SVDVLTQDEIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYERLKKDFEERH 234 (413) T ss_pred eEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHHh Confidence 234678999999985 44556788999888877643 346788999999999999988887777777766 Q ss_pred HHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc----cc--hHHHHHHHHHHHHHH Q lcl|Aclame:pro 196 KNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG----TA--SQEQQIYFYNSTIIP 268 (378) Q Consensus 196 ~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~----~~--~e~~~~~f~~~~l~P 268 (378) ++ ..|+++++++++|++|++++++++++++ +.+++.+++||++|||||++|+. ++ .|++.++|+++||.| T Consensus 235 ~g---~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~~i~P 311 (413) T protein:vir:48 235 TG---LGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVP 311 (413) T ss_pred cC---ccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHHHHHHHHHHHHHHH Confidence 42 2678899999999999999999999995 55789999999999999999963 33 378889999999999 Q ss_pred HHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeee Q lcl|Aclame:pro 269 LLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYI 348 (378) Q Consensus 269 ~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~ 348 (378) ++++||++||++||++.++. + + .++||.+.++++|.+++++++.+++++|++|+||+|+++|+||+||||+++ T Consensus 312 ~~~~ie~~l~~~L~~~~~~~-~----~--~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~~ 384 (413) T protein:vir:48 312 YLTRIEQRINTGLVRESKQG-K----F--YAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYL 384 (413) T ss_pred HHHHHHHHHHhhccCccccC-C----e--EEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceee Confidence 99999999999999987642 2 2 356777899999999999999999999999999999999999999999999 Q ss_pred ecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 349 ANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 349 ~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +|+|++++..++++.+... .+.+.+| T Consensus 385 ~~~n~~~~~~~~~~~~~~~----~~~~~~~ 410 (413) T protein:vir:48 385 TPMNMTTSPSAGDDNGKKK----ESGDADK 410 (413) T ss_pred ccccccccccccccCCCCC----CCCCccc Confidence 9999999876654432221 1112222 No 31 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=1.5e-81 Score=463.64 Aligned_cols=353 Identities=18% Similarity=0.185 Sum_probs=274.4 Q ss_pred CCccccccccccccccCCcc-c----eeec-------ccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQ-R----VTAW-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~-~----~~~~-------~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) ||+|.+...-.- ..+..+. . ..++ .+...++..++|++||++||++||++|+++|+.+ T Consensus 26 ~~~f~~~e~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~Ia~~iA~lpl~~~~~~--------- 95 (441) T protein:vir:98 26 VGIFYKNEKRDL-QYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNG--------- 95 (441) T ss_pred cccccccccccc-cCCCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHHHHhhccCceEEecCC--------- Confidence 888876543211 1111110 0 0011 1223456788999999999999999999998632 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------------- Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------------- 127 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------------- 127 (378) ....+|++++||+.+|||+||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 96 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~-r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~ 174 (441) T protein:vir:98 96 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEIT-RDKTGEPMNLTFRKTSEIELKLDARGRLYYFHQRI 174 (441) T ss_pred cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEE-EcCCCcEEEEEEEcCceeEEEECCCCcEEEEEEEe Confidence 13468999999999999999999999999999999999999987 67789998888632 Q ss_pred ------CeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCC-HHHHHHHH Q lcl|Aclame:pro 128 ------DKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLD-IDNTQEYR 188 (378) Q Consensus 128 ------~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~-~~~~~~~~ 188 (378) ..+.|+++||||||+ +.++..|.||+..+.+++.. +.+++.|+|+|++++.++ +++.++++ T Consensus 175 ~~~~~~~~~~~~~~dviHir~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~~~~~ 254 (441) T protein:vir:98 175 DSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAR 254 (441) T ss_pred ccCcceeeEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHH Confidence 123578899999995 45566789999988877653 346789999999999875 44445556 Q ss_pred HHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc---ch-HHHHHHHHH Q lcl|Aclame:pro 189 EKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT---AS-QEQQIYFYN 263 (378) Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~---~~-e~~~~~f~~ 263 (378) ++|++.+. +..|++++++|++|++|++++++++++++ +.+++.+++||++|||||++|+.+ ++ +++... +. T Consensus 255 ~~~~~~~~---G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~-y~ 330 (441) T protein:vir:98 255 EEFHKSFS---GTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLD-YL 330 (441) T ss_pred HHHHHHhc---CccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHH-HH Confidence 66655543 22688999999999999999999999995 567999999999999999999632 33 444444 45 Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 264 STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG 343 (378) Q Consensus 264 ~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g 343 (378) +||.||+++||++||++|+++.+ + + .++||.+.+++.|.+++++++++++++|++|+||+|+++||||+|| T Consensus 331 ~tl~P~~~~ie~~ln~~L~~~~~---~----~--~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~g 401 (441) T protein:vir:98 331 STLKPYITCVCAELNFKFNDEYV---N----R--EFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPG 401 (441) T ss_pred HHHHHHHHHHHHHHHhhcccccc---C----c--eEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 69999999999999999987532 1 2 3667888999999999999999999999999999999999999999 Q ss_pred CC--eeeecccceecccchhccCccCC----CCCCCCCCC Q lcl|Aclame:pro 344 GD--VYIANLNAVAVKNLSDLQGSRKD----VTSTDETNN 377 (378) Q Consensus 344 GD--~~~~~~n~~~~~~~~~~~~~~~~----~~~~~e~~~ 377 (378) || ++++|+|++|++.+++.+..+.+ ..+|+|+|+ T Consensus 402 Gd~~~~~~~~n~~~~~~~~~~q~~~~~~~~~~~kgGe~ne 441 (441) T protein:vir:98 402 GNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred CCcceEeecccccccccccccccccccccccccCCCCCCC Confidence 98 68899999999988766544422 225555444 No 32 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=2e-81 Score=462.96 Aligned_cols=352 Identities=14% Similarity=0.167 Sum_probs=278.8 Q ss_pred CCccccccccc-cc---cccCCcccee-------ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVSFS-RG---KLNNDTQRVT-------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~~~-~~---~~~~~~~~~~-------~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) =|++++.++.. .. .........+ ...+...++.+++|++||++||++||++||++|++++ T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~~~--------- 74 (409) T protein:vir:93 4 ENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--------- 74 (409) T ss_pred cchhhhhhhhhhhhhhccccccccccccccCccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeeccc--------- Confidence 45666554411 00 0000001011 1112234568899999999999999999999998653 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec----------------------- Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA----------------------- 126 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~----------------------- 126 (378) ..+|++++||+.+|||+||+++||+.++.+++++||||++++ ++..|++.++||. T Consensus 75 -~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~ 152 (409) T protein:vir:93 75 -VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAA 152 (409) T ss_pred -cccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEE-ECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcC Confidence 357999999999999999999999999999999999999987 6788988888763 Q ss_pred -CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHHHH---------hcCCcceeeeeCCcCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 127 -DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQTKL---------EQGKLRGLLKINAFLDIDNTQEYREKALTT 194 (378) Q Consensus 127 -~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~~~---------~~~~~~gil~~~~~l~~~~~~~~~~~~~~~ 194 (378) +..+.|+++||||||++ .++..|.||+..+.+++.... ++..+.++++.++.+++++.++++++|++. T Consensus 153 ~g~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~ 232 (409) T protein:vir:93 153 TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQY 232 (409) T ss_pred CceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHHHHHHHHHHHHHH Confidence 12345789999999964 445568899988887765421 233456788899999999988888888765 Q ss_pred HHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc------chHHHHHHHHHHHHH Q lcl|Aclame:pro 195 IKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT------ASQEQQIYFYNSTII 267 (378) Q Consensus 195 ~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~------~~e~~~~~f~~~~l~ 267 (378) ++ ++++++++++|++|++++++++++++ +.+++++++||++|||||++|++. +.|++.++|++.||. T Consensus 233 ~~------~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~ 306 (409) T protein:vir:93 233 YE------ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLL 306 (409) T ss_pred hh------cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHH Confidence 53 46789999999999999999999995 557899999999999999999742 247888999999999 Q ss_pred HHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCee Q lcl|Aclame:pro 268 PLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVY 347 (378) Q Consensus 268 P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~ 347 (378) |++++||++|+++||++.++..++ .|+||.+.+++.|.+++++++.+++++|++|+||+|+++|+||+||||++ T Consensus 307 P~~~~ie~~l~~~Ll~~~~~~~~~------~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~ 380 (409) T protein:vir:93 307 PIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKP 380 (409) T ss_pred HHHHHHHHHHHhhcCCcccccCcc------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee Confidence 999999999999999998776543 36678889999999999999999999999999999999999999999999 Q ss_pred eecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 348 IANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 348 ~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++|++|++...+.+ +..++|+++.+| T Consensus 381 ~~~~n~~~~~~~~~~~---~~~~gG~~n~~e 408 (409) T protein:vir:93 381 LISGDLYPIDTPLELR---KSLKGGDKNVNE 408 (409) T ss_pred eecccccccccchhhc---ccccCCCCCcCC Confidence 9999999998765443 223333444444 No 33 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=2.7e-81 Score=462.25 Aligned_cols=353 Identities=18% Similarity=0.182 Sum_probs=272.4 Q ss_pred CCccccccccccccccCCcc-c----eeec-------ccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQ-R----VTAW-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~-~----~~~~-------~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) ||+|.+...-.-. .+..+. . +.++ .....++..++||+||++||++||++|+++|+.. T Consensus 26 ~~lf~~~e~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~~--------- 95 (441) T protein:vir:79 26 VGIFYKNEKRDLQ-YNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNG--------- 95 (441) T ss_pred ccccccccccccc-CCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecCc--------- Confidence 7777654322111 111110 0 0011 1122346788999999999999999999998632 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------------- Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------------- 127 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------------- 127 (378) ....+|++++||+.+|||+||+++||+.++.+++++||||++++ ++..|++.+++|.. T Consensus 96 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~ 174 (441) T protein:vir:79 96 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEIT-RDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRI 174 (441) T ss_pred cccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEe Confidence 13467999999999999999999999999999999999999987 67789998888631 Q ss_pred ------CeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCC-HHHHHHHH Q lcl|Aclame:pro 128 ------DKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLD-IDNTQEYR 188 (378) Q Consensus 128 ------~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~-~~~~~~~~ 188 (378) ..+.|+++||||||+ +.++..|.||++.+.+++.. +.+++.|+|+|++++.++ +++.++++ T Consensus 175 ~~~~~~~~~~~~~~dvih~k~~~~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r 254 (441) T protein:vir:79 175 DSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAR 254 (441) T ss_pred ccCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHHH Confidence 123578899999995 45566789999988877653 346789999999999875 45445556 Q ss_pred HHHHHHHHHhhcc-ccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc---chHHHHHHHHH Q lcl|Aclame:pro 189 EKALTTIKNMQEG-SSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT---ASQEQQIYFYN 263 (378) Q Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~---~~e~~~~~f~~ 263 (378) ++|++.+ +| .|+++++++++|++|++++++++++++ +.+++.+++||++|||||++|+.+ ++.+|...++. T Consensus 255 ~~~~~~~----~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~~~ 330 (441) T protein:vir:79 255 EEFHKSF----SGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDYL 330 (441) T ss_pred HHHHHHh----cCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHH Confidence 6665554 44 678999999999999999999999996 557899999999999999999732 33334444566 Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 264 STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG 343 (378) Q Consensus 264 ~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g 343 (378) .||.|++++||++||++|+++.+ . ..++||.+.+++.|.+++++++.+++++||+|+||+|+++||||+|| T Consensus 331 ~tl~P~~~~ie~eln~kl~~~~~-------~--~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~g 401 (441) T protein:vir:79 331 STLKPYITCVCAELNFKFNDEYV-------N--REFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPG 401 (441) T ss_pred HHHHHHHHHHHHHHhhhcccccc-------C--ceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 79999999999999999986531 1 24677888999999999999999999999999999999999999999 Q ss_pred CC--eeeecccceecccchhccCccC----CCCCCCCCCC Q lcl|Aclame:pro 344 GD--VYIANLNAVAVKNLSDLQGSRK----DVTSTDETNN 377 (378) Q Consensus 344 GD--~~~~~~n~~~~~~~~~~~~~~~----~~~~~~e~~~ 377 (378) || .+++|+|++|++.+++.+..+. +..+|+|+|+ T Consensus 402 gd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:79 402 GNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred CCcceEeecccccccccccccccccccccccccCCCCCCC Confidence 98 5889999999998766554432 2224444444 No 34 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=2.7e-81 Score=462.25 Aligned_cols=353 Identities=18% Similarity=0.182 Sum_probs=272.4 Q ss_pred CCccccccccccccccCCcc-c----eeec-------ccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQ-R----VTAW-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~-~----~~~~-------~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) ||+|.+...-.-. .+..+. . +.++ .....++..++||+||++||++||++|+++|+.. T Consensus 26 ~~lf~~~e~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~~--------- 95 (441) T protein:vir:94 26 VGIFYKNEKRDLQ-YNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNG--------- 95 (441) T ss_pred ccccccccccccc-CCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecCc--------- Confidence 7777654322111 111110 0 0011 1122346788999999999999999999998632 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------------- Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------------- 127 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------------- 127 (378) ....+|++++||+.+|||+||+++||+.++.+++++||||++++ ++..|++.+++|.. T Consensus 96 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~ 174 (441) T protein:vir:94 96 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEIT-RDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRI 174 (441) T ss_pred cccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEe Confidence 13467999999999999999999999999999999999999987 67789998888631 Q ss_pred ------CeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCC-HHHHHHHH Q lcl|Aclame:pro 128 ------DKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLD-IDNTQEYR 188 (378) Q Consensus 128 ------~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~-~~~~~~~~ 188 (378) ..+.|+++||||||+ +.++..|.||++.+.+++.. +.+++.|+|+|++++.++ +++.++++ T Consensus 175 ~~~~~~~~~~~~~~dvih~k~~~~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r 254 (441) T protein:vir:94 175 DSNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAR 254 (441) T ss_pred ccCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHHH Confidence 123578899999995 45566789999988877653 346789999999999875 45445556 Q ss_pred HHHHHHHHHhhcc-ccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc---chHHHHHHHHH Q lcl|Aclame:pro 189 EKALTTIKNMQEG-SSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT---ASQEQQIYFYN 263 (378) Q Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~---~~e~~~~~f~~ 263 (378) ++|++.+ +| .|+++++++++|++|++++++++++++ +.+++.+++||++|||||++|+.+ ++.+|...++. T Consensus 255 ~~~~~~~----~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~~~ 330 (441) T protein:vir:94 255 EEFHKSF----SGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDYL 330 (441) T ss_pred HHHHHHh----cCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHH Confidence 6665554 44 678999999999999999999999996 557899999999999999999732 33334444566 Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 264 STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG 343 (378) Q Consensus 264 ~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g 343 (378) .||.|++++||++||++|+++.+ . ..++||.+.+++.|.+++++++.+++++||+|+||+|+++||||+|| T Consensus 331 ~tl~P~~~~ie~eln~kl~~~~~-------~--~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~g 401 (441) T protein:vir:94 331 STLKPYITCVCAELNFKFNDEYV-------N--REFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPG 401 (441) T ss_pred HHHHHHHHHHHHHHhhhcccccc-------C--ceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 79999999999999999986531 1 24677888999999999999999999999999999999999999999 Q ss_pred CC--eeeecccceecccchhccCccC----CCCCCCCCCC Q lcl|Aclame:pro 344 GD--VYIANLNAVAVKNLSDLQGSRK----DVTSTDETNN 377 (378) Q Consensus 344 GD--~~~~~~n~~~~~~~~~~~~~~~----~~~~~~e~~~ 377 (378) || .+++|+|++|++.+++.+..+. +..+|+|+|+ T Consensus 402 gd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:94 402 GNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred CCcceEeecccccccccccccccccccccccccCCCCCCC Confidence 98 5889999999998766554432 2224444444 No 35 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=5.2e-81 Score=460.75 Aligned_cols=355 Identities=18% Similarity=0.179 Sum_probs=276.9 Q ss_pred CCccccccccccccccCCcc----ceeec-------ccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQ----RVTAW-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) ||||++...-.......+.. ...++ .+...++.+++||+||++||++||++||++|+.++ T Consensus 1 Mg~f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~--------- 71 (416) T protein:vir:45 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQ--------- 71 (416) T ss_pred CCcccccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCcc--------- Confidence 99998764322111111100 01111 11223467788999999999999999999986332 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC---------------------- Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------------- 127 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~---------------------- 127 (378) ...+|++++||+.+|||+||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 72 ~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~ 150 (416) T protein:vir:45 72 INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEIT-RDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRID 150 (416) T ss_pred ccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEec Confidence 2367999999999999999999999999999999999999987 67789998888731 Q ss_pred -----CeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCC-HHHHHHHHH Q lcl|Aclame:pro 128 -----DKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLD-IDNTQEYRE 189 (378) Q Consensus 128 -----~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~-~~~~~~~~~ 189 (378) ..+.|+++||||||+ +.++..|.||+..+.+++.. +.+++.|+|+|++++.++ +++.+++++ T Consensus 151 ~~~~~~~~~~~~~evihir~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~ 230 (416) T protein:vir:45 151 SNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRARE 230 (416) T ss_pred CCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHH Confidence 124578899999995 45566788999988877653 346789999999998875 444555666 Q ss_pred HHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc---cchHHHHHHHHHHH Q lcl|Aclame:pro 190 KALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG---TASQEQQIYFYNST 265 (378) Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~---~~~e~~~~~f~~~~ 265 (378) +|++.+. +..++++++++++|++|++++++++++++ +.+++.+++||++|||||++++. +++..|...+|.+| T Consensus 231 ~~~~~~~---g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~ 307 (416) T protein:vir:45 231 EFHKSFS---GTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDYLST 307 (416) T ss_pred HHHHHhc---CccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHHHH Confidence 6666553 22678899999999999999999999995 55789999999999999999963 23334445566779 Q ss_pred HHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD 345 (378) Q Consensus 266 l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD 345 (378) |.|++++||++||++|+++.+ + ..++|+.+.+++.|.+++++++.+++++|+||+||+|+++|+||+|||| T Consensus 308 l~P~~~~ie~~ln~~l~~~~~---~------~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd 378 (416) T protein:vir:45 308 LKPYITCVCAELNFKFNDEYV---N------REFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGN 378 (416) T ss_pred HHHHHHHHHHHHhhhcccccc---C------ceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 999999999999999987532 1 2466788899999999999999999999999999999999999999987 Q ss_pred --eeeecccceecccchhccCccCCC----CCCCCCCC Q lcl|Aclame:pro 346 --VYIANLNAVAVKNLSDLQGSRKDV----TSTDETNN 377 (378) Q Consensus 346 --~~~~~~n~~~~~~~~~~~~~~~~~----~~~~e~~~ 377 (378) ++++|+|++|++.+.+.+..+.+. -+|+|+|+ T Consensus 379 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:45 379 GSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred cceEeecccccccccccccCcccccccccccCCCCCCC Confidence 689999999999887666554332 34555544 No 36 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=5.2e-81 Score=460.75 Aligned_cols=355 Identities=18% Similarity=0.179 Sum_probs=276.9 Q ss_pred CCccccccccccccccCCcc----ceeec-------ccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQ----RVTAW-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) ||||++...-.......+.. ...++ .+...++.+++||+||++||++||++||++|+.++ T Consensus 1 Mg~f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~--------- 71 (416) T protein:vir:81 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQ--------- 71 (416) T ss_pred CCcccccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCcc--------- Confidence 99998764322111111100 01111 11223467788999999999999999999986332 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC---------------------- Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------------- 127 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~---------------------- 127 (378) ...+|++++||+.+|||+||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 72 ~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~ 150 (416) T protein:vir:81 72 INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEIT-RDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRID 150 (416) T ss_pred ccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEec Confidence 2367999999999999999999999999999999999999987 67789998888731 Q ss_pred -----CeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCC-HHHHHHHHH Q lcl|Aclame:pro 128 -----DKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLD-IDNTQEYRE 189 (378) Q Consensus 128 -----~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~-~~~~~~~~~ 189 (378) ..+.|+++||||||+ +.++..|.||+..+.+++.. +.+++.|+|+|++++.++ +++.+++++ T Consensus 151 ~~~~~~~~~~~~~evihir~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~ 230 (416) T protein:vir:81 151 SNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRARE 230 (416) T ss_pred CCCceeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHH Confidence 124578899999995 45566788999988877653 346789999999998875 444555666 Q ss_pred HHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc---cchHHHHHHHHHHH Q lcl|Aclame:pro 190 KALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG---TASQEQQIYFYNST 265 (378) Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~---~~~e~~~~~f~~~~ 265 (378) +|++.+. +..++++++++++|++|++++++++++++ +.+++.+++||++|||||++++. +++..|...+|.+| T Consensus 231 ~~~~~~~---g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~ 307 (416) T protein:vir:81 231 EFHKSFS---GTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDYLST 307 (416) T ss_pred HHHHHhc---CccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHHHH Confidence 6666553 22678899999999999999999999995 55789999999999999999963 23334445566779 Q ss_pred HHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD 345 (378) Q Consensus 266 l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD 345 (378) |.|++++||++||++|+++.+ + ..++|+.+.+++.|.+++++++.+++++|+||+||+|+++|+||+|||| T Consensus 308 l~P~~~~ie~~ln~~l~~~~~---~------~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd 378 (416) T protein:vir:81 308 LKPYITCVCAELNFKFNDEYV---N------REFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGN 378 (416) T ss_pred HHHHHHHHHHHHhhhcccccc---C------ceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 999999999999999987532 1 2466788899999999999999999999999999999999999999987 Q ss_pred --eeeecccceecccchhccCccCCC----CCCCCCCC Q lcl|Aclame:pro 346 --VYIANLNAVAVKNLSDLQGSRKDV----TSTDETNN 377 (378) Q Consensus 346 --~~~~~~n~~~~~~~~~~~~~~~~~----~~~~e~~~ 377 (378) ++++|+|++|++.+.+.+..+.+. -+|+|+|+ T Consensus 379 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:81 379 GSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred cceEeecccccccccccccCcccccccccccCCCCCCC Confidence 689999999999887666554332 34555544 No 37 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=2.5e-81 Score=462.45 Aligned_cols=363 Identities=12% Similarity=0.109 Sum_probs=280.2 Q ss_pred CCccccccc-cccccc-cCCc---------cceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVS-FSRGKL-NNDT---------QRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~-~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) |-|.....+ .....+ .+.+ .......+...+++.++||+||++||++||++||++|++++++ .. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia~lp~~~~~~~~~~-----~~ 75 (419) T protein:vir:80 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDD-----RK 75 (419) T ss_pred CCcccccccccCcCCCCcchhhHHhhcccccccCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEecCCC-----cc Confidence 544333222 111111 0111 0001112334467889999999999999999999999987653 34 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC-------------------CeE Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD-------------------DKK 130 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~-------------------~~~ 130 (378) ++.+|++++||+.+||++||+++||+.++.+++++||||++++ ++..|++.++||.. +.. T Consensus 76 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~-r~~~G~~~~L~~i~~~~v~i~~~~~~~~~y~~~~~~ 154 (419) T protein:vir:80 76 PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFID-RDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGAD 154 (419) T ss_pred cccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEecCceEEEEECCCceEEEEEcCcc Confidence 5689999999999999999999999999999999999999987 67789999998742 112 Q ss_pred EEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 131 EYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNM 198 (378) Q Consensus 131 ~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) .+++++|+|+|+ +.++..|.|++..+..++.. +.+++.|+|+|++++.++....++..+++++.|.+. T Consensus 155 ~~~~~~i~h~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (419) T protein:vir:80 155 PLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAK 234 (419) T ss_pred ccchhheEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHHHHHHHH Confidence 356789999995 55667789999888776642 346789999999987664333333444555555555 Q ss_pred hcc-ccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--hHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 QEG-SSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--SQEQQIYFYNSTIIPLL 270 (378) Q Consensus 199 ~~~-~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~e~~~~~f~~~~l~P~~ 270 (378) ++| .|+++++++++|++|++++++++++++ +.+++++++||++|||||.+|+ +++ .|+++++|++.||.|++ T Consensus 235 ~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~~~f~~~~l~P~~ 314 (419) T protein:vir:80 235 FGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) T ss_pred hcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHH Confidence 555 578899999999999999999999996 5678999999999999999996 333 37889999999999999 Q ss_pred HHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeec Q lcl|Aclame:pro 271 IQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIAN 350 (378) Q Consensus 271 ~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~ 350 (378) ++||++|+++||++.++. + + .++||.+.++++|.++|++++.+++++||+|+||+|+++|+||+||||++++| T Consensus 315 ~~ie~~l~~kll~~~~~~-~----~--~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~~~~~ 387 (419) T protein:vir:80 315 KRHEQAKTRDLLLPSERK-Q----Y--FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) T ss_pred HHHHHHHhhhccCccccC-C----e--EEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Confidence 999999999999987653 2 2 35677789999999999999999999999999999999999999999999999 Q ss_pred ccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 351 LNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 351 ~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +|+++.+.+.+.++++.+..+ ..-.| T Consensus 388 ~n~~~~~~~~~~~~~~~~~~~--~~~~~ 413 (419) T protein:vir:80 388 MNMVDASKPQPIPMGKTEPTK--AALDE 413 (419) T ss_pred cccccccccccccCCCCCchh--hhHHH Confidence 999998776655544433221 11122 No 38 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=1.1e-80 Score=458.88 Aligned_cols=356 Identities=14% Similarity=0.106 Sum_probs=274.7 Q ss_pred CCccccccccccccccCC----cccee--ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNND----TQRVT--AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~ 74 (378) |+||.+........+... +...+ .......++.+++||+||++||++||++|+++|+++.++ ....| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Al~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~-------~~~~~ 73 (417) T protein:vir:38 1 MKLFRGLATEVDPHWADHLLDSGVIPSFRGGYLGISALRNSDVLTAVSIVSGDVSRFPLVITDSSTDE-------VIDLA 73 (417) T ss_pred CccccccccCCCccchhhhcccccccccCCceechhhcccHHHHHHHHHHHHhhccCeeEEEEcCCcc-------eeccc Confidence 999977655544333221 11101 001112356788999999999999999999999876442 23579 Q ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC------------------------CeE Q lcl|Aclame:pro 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------------------DKK 130 (378) Q Consensus 75 ~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~------------------------~~~ 130 (378) ++++||+.+|||+||+++||+.++.+++++||||++++++...|.+..++|.. ..+ T Consensus 74 ~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~~y~~~~~~~~~~~ 153 (417) T protein:vir:38 74 NIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNIIYRFTPYNSSMQK 153 (417) T ss_pred hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeEEEEEEEcCCcEEE Confidence 99999999999999999999999999999999999998544457777766521 123 Q ss_pred EEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 131 EYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNM 198 (378) Q Consensus 131 ~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) .++++||||||+ +.++..|+||+..+.+++.. +.+++.|+|+++.++.+++++.++++++|++. T Consensus 154 ~~~~~dviH~r~~~~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~l~~e~~~~~~~~~~~~---- 229 (417) T protein:vir:38 154 VCGFEDVIHWKFFSYDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEARQKIREDFERA---- 229 (417) T ss_pred EecCcceEEecCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHHHHHH---- Confidence 467899999996 34555689999988877642 34677899999999999998877776666554 Q ss_pred hccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc--c--hHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 QEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT--A--SQEQQIYFYNSTIIPLLIQL 273 (378) Q Consensus 199 ~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~--~--~e~~~~~f~~~~l~P~~~~i 273 (378) +++.|+|+++++++|++|+++++++.++++ +.+++++++||++|||||++|+++ + .+++.++|+++||.||+++| T Consensus 230 ~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~s~~e~~~~~~~~~tl~P~~~~i 309 (417) T protein:vir:38 230 QAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNSPNQSVKQLADDYIRNDLPFYFEPI 309 (417) T ss_pred hcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHH Confidence 455788999999999999999999999995 667899999999999999999643 2 37888999999999999999 Q ss_pred HHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC--Ceeeecc Q lcl|Aclame:pro 274 EKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG--DVYIANL 351 (378) Q Consensus 274 e~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG--D~~~~~~ 351 (378) |++|+++||++.++. + + .+.||.+.+.+.+. ..+.+++++|++|+||+|+++|+||+||| |++++|+ T Consensus 310 e~~l~~~Ll~~~~~~-~----~--~~~fd~~~l~~~~~----~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~ 378 (417) T protein:vir:38 310 TSEFELKLLDDAQRH-Q----Y--CIGFDTKSVNGLPI----ADVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTL 378 (417) T ss_pred HHHHHhhhcChhhcc-c----c--eEEechhhhhHHHH----HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecc Confidence 999999999987653 2 2 35667666665433 34678899999999999999999999987 8899999 Q ss_pred cceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 352 NAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 352 n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) |++|++.....+..+..+.+++++|+| T Consensus 379 n~~~~d~~~~~~~~~~~~~kgg~~~~~ 405 (417) T protein:vir:38 379 NTVFLDQKEAYQAEHAAELKGGDTNAK 405 (417) T ss_pred cccccccccccccccccccCCCCCCCC Confidence 999999776654333333333333333 No 39 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=1.1e-80 Score=458.86 Aligned_cols=352 Identities=14% Similarity=0.164 Sum_probs=279.4 Q ss_pred CCcccccccccccc----ccCCcccee-------ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK----LNNDTQRVT-------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) =+++++.++-.-.. .......++ ...+...++.+++|++||++||++||++||++|++++ T Consensus 4 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~--------- 74 (409) T protein:vir:94 4 ENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--------- 74 (409) T ss_pred cccchhhhhHHhhhhhcCCcccccccccccCccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeeccc--------- Confidence 35666554421100 000000111 1112334567899999999999999999999998653 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec----------------------- Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA----------------------- 126 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~----------------------- 126 (378) ..+|++++||+.+||++||+++||+.++.+++++||||++++ ++..|++.++||. T Consensus 75 -~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~ 152 (409) T protein:vir:94 75 -VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAA 152 (409) T ss_pred -ccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcC Confidence 357999999999999999999999999999999999999986 6788988888763 Q ss_pred -CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHHH---------HhcCCcceeeeeCCcCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 127 -DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQTK---------LEQGKLRGLLKINAFLDIDNTQEYREKALTT 194 (378) Q Consensus 127 -~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~~---------~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~ 194 (378) +..+.|+++||||||++ .++..|.||+..+.+++... .++..+.++++.++.+++++.++++++|++. T Consensus 153 ~g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~ 232 (409) T protein:vir:94 153 TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQY 232 (409) T ss_pred CceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEecCCCCCHHHHHHHHHHHHHH Confidence 12345788999999964 44556889998887776542 2233456788899999999988888888765 Q ss_pred HHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc------chHHHHHHHHHHHHH Q lcl|Aclame:pro 195 IKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT------ASQEQQIYFYNSTII 267 (378) Q Consensus 195 ~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~------~~e~~~~~f~~~~l~ 267 (378) ++ ++++++++++|++|++++++++++++ +.+++++++||++|||||++|++. +.|++.++|++.||. T Consensus 233 ~~------~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~ 306 (409) T protein:vir:94 233 YE------ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLL 306 (409) T ss_pred hh------cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHH Confidence 53 56789999999999999999999995 557899999999999999999742 247889999999999 Q ss_pred HHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCee Q lcl|Aclame:pro 268 PLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVY 347 (378) Q Consensus 268 P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~ 347 (378) |+++.||++||++||++.++..++ .++||.+.+++.|.+++++++.+++++|++|+||+|+++|+||+||||++ T Consensus 307 P~~~~ie~~ln~~Ll~~~~~~~~~------~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~ 380 (409) T protein:vir:94 307 PIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKP 380 (409) T ss_pred HHHHHHHHHHHHhhCCcccccCcc------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeE Confidence 999999999999999988765543 36678889999999999999999999999999999999999999999999 Q ss_pred eecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 348 IANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 348 ~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++|++|++...+.+ +..++|+++.+| T Consensus 381 ~~~~n~~~~~~~~~~~---~~~kGG~~n~~e 408 (409) T protein:vir:94 381 LISGDLYPIDTPLELR---KSLKGGDKNVNE 408 (409) T ss_pred eecccccccccchhhc---ccccCCCCCcCC Confidence 9999999998765443 223344444444 No 40 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=1.5e-80 Score=458.21 Aligned_cols=358 Identities=15% Similarity=0.130 Sum_probs=284.6 Q ss_pred CCccccccccccccccCCccc--------eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQR--------VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMA 72 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~ 72 (378) ||||+..+...+......... ............+++||+||++||++||++|+++|++..++. ... T Consensus 1 Mg~~~~f~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~g~------~~~ 74 (403) T protein:vir:80 1 MGLFNFFRRKTRSEPTNAISWFLTQEAYDTLAIPGYTRLSDNPEVRMAVHKIAELISSMTIHLMQNTDNGD------IRI 74 (403) T ss_pred CcccccccccccccccchhhhhcccccccccccchhhhhhhhHHHHHHHHHHHHhhhhCceEEEEecCCce------eec Confidence 999986655544332222111 111111122235789999999999999999999999765532 235 Q ss_pred CchHHHHHhccCCCCCCHHHHHHHHHHHHHhc--CCcEEEEEEeCCCceEEEEeecCC-----------------eEEEe Q lcl|Aclame:pro 73 GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSA--PYVDLYAVFDDNTGELLDLLFADD-----------------KKEYK 133 (378) Q Consensus 73 ~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~--Gna~~~~~~~~~~g~~~~~~~~~~-----------------~~~~~ 133 (378) +|+++++|+.+|||+||+++||+.++.++++. ||||+++. ++..|++.++||... ...|+ T Consensus 75 ~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~-~~~~g~~~~L~~l~p~~v~~~~~~~g~~~~y~~~~~~ 153 (403) T protein:vir:80 75 KNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPK-YTTSGLIDELIPLAPSKVSFVDTDTGYQIWYQGKAYN 153 (403) T ss_pred CChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEE-EcCCCcEEEEEEEcCCeeEEEEcCCceEEEEeecccc Confidence 89999999999999999999999999999985 78999886 678899999987421 12467 Q ss_pred eeEEEEEcc---ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 134 PEELVRLTS---PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQ 199 (378) Q Consensus 134 ~~dvih~r~---~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~ 199 (378) ++|||||+. +.++..|.||+..+..++.. +.++++|+|++++++.+++++.++++++|.+.+.+ T Consensus 154 ~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~~~~~~~~~~~~~~~~~-- 231 (403) T protein:vir:80 154 YDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAATAELSSEEGRNAVFKKYLE-- 231 (403) T ss_pred hhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCChHHHHHHHHHHHHHHhh-- Confidence 889999982 44455688998887766542 34567899999999999998888888888776653 Q ss_pred ccccccceeEecCC-ceeeecc-cchhhhhH-HHHHHHHHHHHHHhCCCHHHhc-ccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 EGSSYNGLTPVDNK-TEIVELK-KDYSVLNK-DEIDLIKSELLTGYFMNENILL-GTASQEQQIYFYNSTIIPLLIQLEK 275 (378) Q Consensus 200 ~~~~~~~~~~l~~g-~~~~~l~-~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~-~~~~e~~~~~f~~~~l~P~~~~ie~ 275 (378) ..++|++++++.+ .+++++. ++++++++ +.+++++++||++|||||++|+ ++++++++.+|+++||.|++++||+ T Consensus 232 -~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~f~~~~l~P~~~~ie~ 310 (403) T protein:vir:80 232 -ASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGVGKYDKDEYNNFINSTILPIAKGIEQ 310 (403) T ss_pred -hhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCccHHHHHHHHHHHHHHHHHHHHH Confidence 3567888888655 4555553 57788885 5678999999999999999997 6677788889999999999999999 Q ss_pred HHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeeccccee Q lcl|Aclame:pro 276 ELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVA 355 (378) Q Consensus 276 ~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~ 355 (378) +||++||++.+ + .+.|+.+.++++|.+++++++.+++++||||+||+|+++||||+||||++++++|++| T Consensus 311 ~l~~kll~~~~--------~--~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~~n~~p 380 (403) T protein:vir:80 311 ELTRKLLISPD--------L--YFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVILENYIP 380 (403) T ss_pred HHHHhccCCCC--------c--EEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccc Confidence 99999998753 2 3567888999999999999999999999999999999999999999999999999999 Q ss_pred cccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 356 VKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 356 ~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++..++++..+.+++++.++++| T Consensus 381 l~~~~~~~~~k~ge~~~~~~~~~ 403 (403) T protein:vir:80 381 LDKIGDQNKLKGGEKGGADGQTD 403 (403) T ss_pred hhhccchhhccCCCCCCCCCCCC Confidence 99877766656556666666666 No 41 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=9.1e-80 Score=453.92 Aligned_cols=358 Identities=11% Similarity=0.113 Sum_probs=272.4 Q ss_pred CCccccccccccccccCC---cc-----------ce---eecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNND---TQ-----------RV---TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~---~~-----------~~---~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) -+||.+.+...+...... +. +. ....+...+++.++||+||++||++||++||++|+++.++. T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~g~ 81 (454) T protein:vir:93 2 WNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQGI 81 (454) T ss_pred CCccccCcccccccccccchhhhhhhhhhhhhhcchhhcCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEeccCCc Confidence 444544322211110000 00 00 00112234577899999999999999999999999876543 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC---------------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~---------------- 127 (378) ..+..+|+++. |+.+||++||+++||+.++.+++++||||++++ ++..|++.++||.. T Consensus 82 ----~~~~~~~~~~~-L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~-r~~~G~~~~L~~i~~~~v~v~~~~~g~~~y 155 (454) T protein:vir:93 82 ----RRETRRGDIAR-LCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKI-RNARGQIKELRILDWNRVEPLVADDGEVFY 155 (454) T ss_pred ----cchhhhHHHHH-HHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEE-ECCCCcEEEEEEEcCcceEEEEcCCCcEEE Confidence 23345565554 556999999999999999999999999999987 66779998888731 Q ss_pred -----------CeEEEeeeEEEEEcc--ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHH Q lcl|Aclame:pro 128 -----------DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDN 183 (378) Q Consensus 128 -----------~~~~~~~~dvih~r~--~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~ 183 (378) ..+.|+++||||+|. +.++..|.+|+..+..++.. +.++++|+|+|++++.+++++ T Consensus 156 ~~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~ 235 (454) T protein:vir:93 156 RITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEEN 235 (454) T ss_pred EEEeccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHH Confidence 123577889999995 34455688999888776643 346789999999999999988 Q ss_pred HHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--hHH Q lcl|Aclame:pro 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--SQE 256 (378) Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~e~ 256 (378) .++++++|++. ++|.|+|+++++++|++|++++++++++++ +.+++.+++||++|||||++|+ +++ .|+ T Consensus 236 ~~~~~~~~~~~----~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~ 311 (454) T protein:vir:93 236 AKKLKSNWDSG----YTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEA 311 (454) T ss_pred HHHHHHHHHHH----hcccccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHH Confidence 77666666554 456788999999999999999999999995 6678999999999999999996 222 478 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHh Q lcl|Aclame:pro 257 QQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM 336 (378) Q Consensus 257 ~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~ 336 (378) ++++|+++||.||++.||++||++|+++.+ ++ ++|+.+.++++|.++|++++.+++++|+||+||+|+++ T Consensus 312 ~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~--------~~--~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~ 381 (454) T protein:vir:93 312 LEQQYYSQCLQTLIESIELLLDEALETGEN--------ES--TEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE 381 (454) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--------cE--EEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 889999999999999999999999987531 23 56677889999999999999999999999999999999 Q ss_pred CCCCCCCCCeeeecccceecccchhccCccCC----CC-------CCCCCCCC Q lcl|Aclame:pro 337 GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKD----VT-------STDETNNQ 378 (378) Q Consensus 337 gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~----~~-------~~~e~~~e 378 (378) ||||+||||++++++|.+|++..++.+..+.. .+ ++..+.|+ T Consensus 382 gl~pi~ggD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 434 (454) T protein:vir:93 382 NLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNK 434 (454) T ss_pred CCCCCCCCCeeeeccCccchHhhhccCcccCCCCCCccCCCCCCCCCCCCCCC Confidence 99999999999999999998765543322111 11 01111111 No 42 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=5.6e-80 Score=455.06 Aligned_cols=352 Identities=17% Similarity=0.120 Sum_probs=277.5 Q ss_pred CCccccccccccc-------cccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccC Q lcl|Aclame:pro 1 MNLFGKVVSFSRG-------KLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAG 73 (378) Q Consensus 1 M~~f~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~ 73 (378) |+||++..+.... .+.+..... .....++.+++||+||++||++||++|+++++.+. ..+.+ T Consensus 1 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Al~~~~V~~~i~~Ia~~iA~lp~~~~~~~g--------~~~~~ 69 (406) T protein:vir:97 1 MSFFQPLGTSKVSYDDYISSVLAGDVSQK---YLGVSALKNSDILTATSIIAGDIARFPLVKKDVNG--------DIIHD 69 (406) T ss_pred CccccccCCCCCCcchHHHHHhcCCCCcc---cccchhhccHHHHHHHHHHHHhhhhCeeEEEecCc--------ccccc Confidence 9999875432211 111111111 11123567899999999999999999998765432 23468 Q ss_pred chHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC------------------------Ce Q lcl|Aclame:pro 74 SDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------------------DK 129 (378) Q Consensus 74 ~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~------------------------~~ 129 (378) |++++||+.+|||+||+++||+.++.+++++||||+++++....|++.+++|.. .. T Consensus 70 ~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~~y~~~~~~~~~~ 149 (406) T protein:vir:97 70 EDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEIVYTFTDMLTAKQ 149 (406) T ss_pred chHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceEEEEEEecCCceE Confidence 999999999999999999999999999999999999998544578888887631 22 Q ss_pred EEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 130 KEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKN 197 (378) Q Consensus 130 ~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~ 197 (378) +.|+++||||||+ +.++..|.||+..+.+++.. +.+++.+.+++..++.+++++.++++++|++. T Consensus 150 ~~~~~~evih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~--- 226 (406) T protein:vir:97 150 VKCFAHDVIHWKFFSHDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQLSGDARQRARQEFEKM--- 226 (406) T ss_pred EEEccccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCHHHHHHHHHHHHHH--- Confidence 3567899999995 44555689999888776643 33566777788888889988877777666654 Q ss_pred hhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc----chHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 198 MQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ASQEQQIYFYNSTIIPLLIQ 272 (378) Q Consensus 198 ~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~----~~e~~~~~f~~~~l~P~~~~ 272 (378) .++.|+|+++++++|++|+++++++.++++ +.+++.+++||++|||||++|+++ +.+++.++|++.||.||+++ T Consensus 227 -~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~~~~e~~~~~f~~~~l~P~~~~ 305 (406) T protein:vir:97 227 -REGSVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNSPNQSVAQLMEDYVTNDLPFYFDA 305 (406) T ss_pred -hcccccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCCCcchHHHHHHHHHHHHHHHHHHH Confidence 456788999999999999999999999995 667899999999999999999643 35788899999999999999 Q ss_pred HHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeec Q lcl|Aclame:pro 273 LEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIAN 350 (378) Q Consensus 273 ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~ 350 (378) ||++|+++||++.++. .++ ++||.. .+.+.+++.+.+++++|+||+||+|+++|+||+++ ||++++| T Consensus 306 ie~~l~~kll~~~~~~-----~~~--i~fd~~----~~~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~ 374 (406) T protein:vir:97 306 ITSELGLKTLNDKDRR-----LYH--IEFDTR----SVTGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQSS 374 (406) T ss_pred HHHHHhhhhcChhhcc-----cee--EEEecC----ccchhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEeec Confidence 9999999999987652 233 444543 45567788889999999999999999999999976 9999999 Q ss_pred ccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 351 LNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 351 ~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +|++|++...+.+.+.+...+++|+|+| T Consensus 375 ~n~~~~~~~~~~~~~~~~~~~gg~~~~~ 402 (406) T protein:vir:97 375 LNYVFLDKKEEYQDKVGIKGKGGEVNAE 402 (406) T ss_pred cCccchhcccccccccccccCCCCCCCC Confidence 9999999887766666666667776666 No 43 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=1.2e-79 Score=453.33 Aligned_cols=356 Identities=10% Similarity=0.035 Sum_probs=272.4 Q ss_pred CCccccccccccccccCCcc-----------cee-ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQ-----------RVT-AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) ||||+++........+.... ..+ +...+.+....++|++||++||++||++|+++|++++++ .. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~dg----~~ 76 (423) T protein:vir:81 1 MGFLQKLGLAPSVVATPEPIELVGPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVEDG----GR 76 (423) T ss_pred CchhHhhccccccccCccccccccccccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecCC----ce Confidence 99999974332211111110 001 112233445678999999999999999999999987655 34 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeC-CCceEEEEeec--------------------- Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDD-NTGELLDLLFA--------------------- 126 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~-~~g~~~~~~~~--------------------- 126 (378) +++.+|++++||+ +|||+||+++||+.++.+++++||||+++.++. ..+.++.++|. T Consensus 77 ~~~~~~~~~~ll~-~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y~~ 155 (423) T protein:vir:81 77 ERVREGHLARVCK-LANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDYII 155 (423) T ss_pred eeeccchHHHHhh-cCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEEEE Confidence 5678899999997 899999999999999999999999999986432 23455555542 Q ss_pred -------CCeEEEeeeEEEEEcccc--CCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCC-----cCCH Q lcl|Aclame:pro 127 -------DDKKEYKPEELVRLTSPF--YINEDTSILDNALASIQT-----------KLEQGKLRGLLKINA-----FLDI 181 (378) Q Consensus 127 -------~~~~~~~~~dvih~r~~~--~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~-----~l~~ 181 (378) +..+.|+++||||+|++. +...|.||+..+++++.. +.|++.|+|+|+++. .+++ T Consensus 156 ~~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~ 235 (423) T protein:vir:81 156 IESGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDA 235 (423) T ss_pred EEecCCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCH Confidence 112457789999999643 233589999988877643 346788999998764 4677 Q ss_pred HHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccc--h Q lcl|Aclame:pro 182 DNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTA--S 254 (378) Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~--~ 254 (378) ++.++++++|++.+.+ +..++|++++|++|++|++++++++++++ +.+++.+++||++|||||++|+ +++ . T Consensus 236 e~~~~~~~~~~~~~~~--~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn~ 313 (423) T protein:vir:81 236 ESRTRFMANLRASFSP--KSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSNV 313 (423) T ss_pred HHHHHHHHHHHHHhcc--ccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCcccH Confidence 7777777777766542 23678899999999999999999999996 5578999999999999999996 333 3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHh-CCCCCHHHHH Q lcl|Aclame:pro 255 QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENIN-GPIFTQNQLL 333 (378) Q Consensus 255 e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~-~G~~t~NE~R 333 (378) |++.++|+++||.|++++||++|+++|+++.+... .. ..++||.+.++++|.++|++++.+++. +||||+||+| T Consensus 314 e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~---~~--~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R 388 (423) T protein:vir:81 314 REFRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDN---EK--FYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVR 388 (423) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCcccccc---Cc--cEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHH Confidence 78899999999999999999999999999765321 11 236678889999999999999999985 6999999999 Q ss_pred HHhCCCCCCCCCeeeecccceecccchhccCccCCCCCC Q lcl|Aclame:pro 334 VKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST 372 (378) Q Consensus 334 ~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 372 (378) +++||||+||||++++|+|+.+.+... .++++.+ + T Consensus 389 ~~~gl~p~~gGD~~~~p~n~~~~~~~~--~~~~~~~--t 423 (423) T protein:vir:81 389 AMDNLPSIDGGDDLARPLNTEFGDSED--APGEEVE--T 423 (423) T ss_pred HHhCCCCCCCcceeecccccccCccCC--CCCCCCC--C Confidence 999999999999999999998754311 1111111 1 No 44 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=2e-79 Score=452.05 Aligned_cols=360 Identities=11% Similarity=0.101 Sum_probs=273.4 Q ss_pred CCccccccccccccccCCc--------------cceee----cccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDT--------------QRVTA----WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~--------------~~~~~----~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 62 (378) ||||++..+.......... .+..+ ..+...++..++||+||++||++||++||++|++...+ T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) T ss_pred CchhhhhhccccccccccccccccccchhhhhhccccccCCceechHHhhccHHHHHHHHHHHHhHhhCceEEEEecCCc Confidence 9999976543221110000 00001 11233457788999999999999999999999875322 Q ss_pred cccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCC-------------- Q lcl|Aclame:pro 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADD-------------- 128 (378) Q Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~-------------- 128 (378) ..++..|.+..|| .+||++||+++||+.++.+++++||||++++ + ..|++..+||... T Consensus 81 -----~~~~~~~~~~~ll-~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~-~-~~g~~~~l~~l~p~~v~v~~~~~~~~~ 152 (457) T protein:vir:62 81 -----RKEIDTPEWLDFP-NAEPGGMGRIDILSQTVLSLLLQGNAFLAVR-W-AGPNIAGLDVLDPTKIHVHMVMVDGLR 152 (457) T ss_pred -----cccccchHHHHhc-cccCCCCCHHHHHHHHHHHHhhcCCeEEEEE-e-CCCcEEEEEEEcCcceEEEEeccCCcc Confidence 2334455566666 4899999999999999999999999999875 3 3588888876310 Q ss_pred -----------------eEEEeeeEEEEEccccC--CccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCc Q lcl|Aclame:pro 129 -----------------KKEYKPEELVRLTSPFY--INEDTSILDNALASIQT-----------KLEQGKLRGLLKINAF 178 (378) Q Consensus 129 -----------------~~~~~~~dvih~r~~~~--~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~ 178 (378) ...|+++||||||++.. ...|.+|+..++.++.. +.|+++|+|+|++++. T Consensus 153 ~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ 232 (457) T protein:vir:62 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGT 232 (457) T ss_pred ceeEEEEEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCC Confidence 02357899999996432 24688999888776643 3567899999999999 Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc------ Q lcl|Aclame:pro 179 LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------ 251 (378) Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~------ 251 (378) +++++.+++++.|++.+++ ..|++++++|++|++|++++++++++++ +.+++++++||++|||||++|+. T Consensus 233 ls~e~~~~~~~~~~~~~~G---~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~ 309 (457) T protein:vir:62 233 MSEEGLARAREAWRAANSG---VDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS 309 (457) T ss_pred CCHHHHHHHHHHHHHHhcC---ccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCccc Confidence 9999877777777766542 2578899999999999999999999995 56789999999999999999962 Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCH Q lcl|Aclame:pro 252 --TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQ 329 (378) Q Consensus 252 --~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~ 329 (378) ++.|++.++|+++||.||+++||++||++||++.++. + ..++|+.+.++++|.++|++++.+++++||||+ T Consensus 310 ~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~~-~------~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~ 382 (457) T protein:vir:62 310 WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADR-F------RFVKFNLDEIKRGAPKERMELWSLGLQNGIYSI 382 (457) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccC-c------eEEEeechhhhccCHHHHHHHHHHHHhCCCcCH Confidence 2347888999999999999999999999999987642 2 235677789999999999999999999999999 Q ss_pred HHHHHHhCCCCCCCC--CeeeecccceecccchhccCcc--CC-------CCCCCC--------CCCC Q lcl|Aclame:pro 330 NQLLVKMGEQPIEGG--DVYIANLNAVAVKNLSDLQGSR--KD-------VTSTDE--------TNNQ 378 (378) Q Consensus 330 NE~R~~~gl~p~~gG--D~~~~~~n~~~~~~~~~~~~~~--~~-------~~~~~e--------~~~e 378 (378) ||+|+++||||+||| |++++|+|+++++...+.+... .+ ..++.+ +++| T Consensus 383 NE~R~~~gl~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 450 (457) T protein:vir:62 383 DEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGE 450 (457) T ss_pred HHHHHHhCCCCCCCCCcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCcccc Confidence 999999999999987 9999999999887654332211 00 000000 0111 No 45 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=7.1e-79 Score=449.03 Aligned_cols=359 Identities=15% Similarity=0.103 Sum_probs=285.1 Q ss_pred CCcccccccccccccc-CCcc---------c-eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLN-NDTQ---------R-VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~~~~~~~~-~~~~---------~-~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) ||||++...+.+.... .... . .....+...++++++|++||++||++||++||++||.+.++. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~------ 74 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRADTGYVGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLISSMTIYLMQNTEDGD------ 74 (406) T ss_pred CcchhhhccccccccccccchhhhhhccCcccCccccCHHHHhhcHHHHHHHHHHHHhhccCceEEEEecCCcc------ Confidence 9999987554332111 0000 0 011122344578899999999999999999999999876432 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEE-EEeCCCceEEEEeecC-----------------CeEE Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYA-VFDDNTGELLDLLFAD-----------------DKKE 131 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~-~~~~~~g~~~~~~~~~-----------------~~~~ 131 (378) ...+|++.++|+.+||++||+++||+.++.+++++|++|+++ +.++..|++.++||.. +... T Consensus 75 ~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~~~~~~~~~~ 154 (406) T protein:vir:95 75 IRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDGYQVLYGGQT 154 (406) T ss_pred eeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCeEEEEeccEE Confidence 235799999999999999999999999999999998776553 2367789999998843 1245 Q ss_pred EeeeEEEEEcc-c--cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 132 YKPEELVRLTS-P--FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKN 197 (378) Q Consensus 132 ~~~~dvih~r~-~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~ 197 (378) |+++||||+|. + .++..|.|++..+..++.. +.+++.++|++++++.+++++.++++++|++.+++ T Consensus 155 ~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~~~~~~~~~~g 234 (406) T protein:vir:95 155 FNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAATAELSSEEGRNAVFKKYLQ 234 (406) T ss_pred EchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHHhcc Confidence 78999999984 3 3345688999888766543 34678999999999999999988888888877653 Q ss_pred hhccccccceeEec-CCceeeecc-cchhhhhH-HHHHHHHHHHHHHhCCCHHHhc-ccchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 198 MQEGSSYNGLTPVD-NKTEIVELK-KDYSVLNK-DEIDLIKSELLTGYFMNENILL-GTASQEQQIYFYNSTIIPLLIQL 273 (378) Q Consensus 198 ~~~~~~~~~~~~l~-~g~~~~~l~-~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~-~~~~e~~~~~f~~~~l~P~~~~i 273 (378) ..++++++++. +|.+++++. ++++++++ +.+++++++||++|||||++|+ ++++++++.+|+++||.|++++| T Consensus 235 ---~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~l~P~~~~i 311 (406) T protein:vir:95 235 ---ATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGEFNRDEYNNFINSTILPIAKGI 311 (406) T ss_pred ---ccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCchHHHHHHHHHHHHHHHHHHH Confidence 36778888775 456777764 68899985 5678999999999999999996 66788889999999999999999 Q ss_pred HHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccc Q lcl|Aclame:pro 274 EKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNA 353 (378) Q Consensus 274 e~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~ 353 (378) |++||++||++.+ + .+.||.+.+++.|.+++++.+.+++++||+|+||+|+++|+||+||||++++|+|+ T Consensus 312 e~~l~~~l~~~~~--------~--~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~~~n~ 381 (406) T protein:vir:95 312 EQELTRKLLISPD--------L--YFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVILENY 381 (406) T ss_pred HHHHHHhcCCCCC--------c--EEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccCc Confidence 9999999998642 2 35677889999999999999999999999999999999999999999999999999 Q ss_pred eecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 354 VAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +|++.+++.+..+.+++++++++.| T Consensus 382 ~~~~~~~~~~~~k~g~~~~~~~~~~ 406 (406) T protein:vir:95 382 IPLDKIGDQSKLKGGDNSGADGQTD 406 (406) T ss_pred cchhhcccccccCCCCCCCCCCCCC Confidence 9998877665555444444444444 No 46 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=1.6e-78 Score=447.07 Aligned_cols=360 Identities=11% Similarity=0.102 Sum_probs=278.0 Q ss_pred CCccccccccccccccC----------Cccce--------eecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNN----------DTQRV--------TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~----------~~~~~--------~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 62 (378) ||||++.+++....... +.... ....+...+++.++||+||++||++||++||++|+++.. T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~- 79 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG- 79 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEecCC- Confidence 99998876543322100 00000 011123356778899999999999999999999997643 Q ss_pred cccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCC-------------- Q lcl|Aclame:pro 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADD-------------- 128 (378) Q Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~-------------- 128 (378) +..++.+|++.++|+..|| +||+++||+.++.+++++||||++++ ++ .|+++++||... T Consensus 80 ----~~~~~~~~~l~~~ln~~~n-~~t~~~f~~~~~~~lll~Gna~~~i~-~~-~g~~~~l~~l~p~~v~v~~~~~~~~~ 152 (457) T protein:vir:13 80 ----SRKEIVTPEWLDYPNAEPG-GMGRIDILSQTVLSLLLQGNAFLAVR-WQ-GPNIVGLDVLDPTKIHVHMVMVDGLR 152 (457) T ss_pred ----cccccccchHHHhccccCC-CCCHHHHHHHHHHHHhhcCCeEEEEE-ec-CCcEEEEEEEccCceEEEEecCCCcc Confidence 2345678999999986444 79999999999999999999999985 33 588888877320 Q ss_pred -----------------eEEEeeeEEEEEccccC--CccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCc Q lcl|Aclame:pro 129 -----------------KKEYKPEELVRLTSPFY--INEDTSILDNALASIQT-----------KLEQGKLRGLLKINAF 178 (378) Q Consensus 129 -----------------~~~~~~~dvih~r~~~~--~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~ 178 (378) ...|+++||||+|++.. ...|.|++..+..+|.. +.++++|+|+|++++. T Consensus 153 ~~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ 232 (457) T protein:vir:13 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGT 232 (457) T ss_pred ceeEEEEEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCC Confidence 01357899999996532 34689999888876643 3467899999999999 Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc------ Q lcl|Aclame:pro 179 LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------ 251 (378) Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~------ 251 (378) +++++.+++++.|++.++ +..|++++++|++|++|++++++++++++ +.+++.+++||++|||||++|+. T Consensus 233 ls~e~~~~~~~~~~~~~~---g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~ 309 (457) T protein:vir:13 233 MSEEGLARAREAWRAANS---GVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTS 309 (457) T ss_pred CCHHHHHHHHHHHHHHhc---CccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCccc Confidence 999987777777776654 22678999999999999999999999995 55789999999999999999962 Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCH Q lcl|Aclame:pro 252 --TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQ 329 (378) Q Consensus 252 --~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~ 329 (378) ++.+++.++|+++||.||+++||++||++||++.++. + + .++||.+.++++|.++|++++.+++++|+||+ T Consensus 310 ~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~~-~----~--~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~ 382 (457) T protein:vir:13 310 WGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADR-F----R--FVKFNLDEIKRGAPKERMELWSLGLQNGIYSI 382 (457) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccC-c----e--eEEeechhhhccCHHHHHHHHHHHHhCCCcCH Confidence 2247888999999999999999999999999987642 2 2 35677789999999999999999999999999 Q ss_pred HHHHHHhCCCCCCCC--CeeeecccceecccchhccCcc---CCCCCCCCCCCC Q lcl|Aclame:pro 330 NQLLVKMGEQPIEGG--DVYIANLNAVAVKNLSDLQGSR---KDVTSTDETNNQ 378 (378) Q Consensus 330 NE~R~~~gl~p~~gG--D~~~~~~n~~~~~~~~~~~~~~---~~~~~~~e~~~e 378 (378) ||+|+++||||+||| |++++|+|+++++...+.+.+. ...++.++.+++ T Consensus 383 NE~R~~~gl~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (457) T protein:vir:13 383 DEVRAAEDMTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEE 436 (457) T ss_pred HHHHHHhCCCCCCCCcccceeeccccccccccccccccCCCCCCCCCccccCCC Confidence 999999999999987 9999999999987544433211 111111111111 No 47 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=1.8e-78 Score=446.81 Aligned_cols=350 Identities=13% Similarity=0.087 Sum_probs=276.2 Q ss_pred CCccccccccccc------cccCC-----ccceeec---ccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRG------KLNND-----TQRVTAW---QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~~~~~~~~------~~~~~-----~~~~~~~---~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) |+||++.++.... ..... ...+..+ ........+++|++||++||++||++||++|+++.++. T Consensus 13 m~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~~~~~~~--- 89 (413) T protein:vir:96 13 LKFFNNKRSPTEESKAKDEIPKAPQVVMTLPNFFKELISDGYTKLSDSPEVRMAVDCIADLVSNMTIQLMQNGETGD--- 89 (413) T ss_pred CCccccCCCcchhhhhhccccccccccccchhhHhhhccchhHHHhhchHHHHHHHHHHHhhccCceEEEEecCCCc--- Confidence 9999886543211 00000 0000000 11112346899999999999999999999999876542 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC------------------- Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------------- 127 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~------------------- 127 (378) ...+|++++||+.+||++||+++||+.++.+++++||||++++++...+.+.++||.. T Consensus 90 ---~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~~~~~y~~~~ 166 (413) T protein:vir:96 90 ---KRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSDDDLDYSITF 166 (413) T ss_pred ---cccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcCCeEEEEEee Confidence 2357999999999999999999999999999999999999998544445677888742 Q ss_pred CeEEEeeeEEEEEcc-c--cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHH Q lcl|Aclame:pro 128 DKKEYKPEELVRLTS-P--FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALT 193 (378) Q Consensus 128 ~~~~~~~~dvih~r~-~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~ 193 (378) ....++++||||||. + .++..|.|++..+..++.. +.+++.|+|+|++++.+++++.++++++|++ T Consensus 167 ~~~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~~~~~~~~~ 246 (413) T protein:vir:96 167 DNKEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSDSDELSDEEGRENFEE 246 (413) T ss_pred cCcEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHH Confidence 123467899999983 2 3445689999988776643 4467889999999999999988877777776 Q ss_pred HHHHhhccccccceeEecCCc-eeeec-ccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc-ccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 194 TIKNMQEGSSYNGLTPVDNKT-EIVEL-KKDYSVLNK-DEIDLIKSELLTGYFMNENILL-GTASQEQQIYFYNSTIIPL 269 (378) Q Consensus 194 ~~~~~~~~~~~~~~~~l~~g~-~~~~l-~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~-~~~~e~~~~~f~~~~l~P~ 269 (378) .+. +..++|++++++.|. +++++ +++++++++ +.+++++++||++|||||.+|+ +++++++..+|+++||.|| T Consensus 247 ~~~---g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~~~~~~~l~P~ 323 (413) T protein:vir:96 247 MYL---KRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVGTYNKDEFNNFINTKIMSI 323 (413) T ss_pred Hhc---CccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCcchHHHHHHHHHHHHHHH Confidence 654 236788999886654 55666 468888886 5568999999999999999997 6778889999999999999 Q ss_pred HHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeee Q lcl|Aclame:pro 270 LIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIA 349 (378) Q Consensus 270 ~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~ 349 (378) ++.||++||++||++. + .+.||.+.+++.|.+++++++.+++++|++|+||+|+++|+||+||||++++ T Consensus 324 ~~~ie~~ln~~ll~~~---------~--~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd~~~~ 392 (413) T protein:vir:96 324 AQVIQQTYNKLIVEED---------M--YFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPDAEMDDLLV 392 (413) T ss_pred HHHHHHHHHHhhCCCC---------c--EEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeee Confidence 9999999999999752 2 3567888999999999999999999999999999999999999999999999 Q ss_pred cccceecccchhccCccCCCC Q lcl|Aclame:pro 350 NLNAVAVKNLSDLQGSRKDVT 370 (378) Q Consensus 350 ~~n~~~~~~~~~~~~~~~~~~ 370 (378) |+|++|++..++.+..+.+++ T Consensus 393 ~~n~~~~~~~~~~~~~~~~dt 413 (413) T protein:vir:96 393 LENYLQQKDLVNQKKLIQDET 413 (413) T ss_pred cccccchhhcccccCCCCCCC Confidence 999999998766554333332 No 48 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=3.9e-78 Score=444.97 Aligned_cols=359 Identities=14% Similarity=0.094 Sum_probs=270.1 Q ss_pred CCcccc--cccccc---cc-ccCC-------ccce---eecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccc Q lcl|Aclame:pro 1 MNLFGK--VVSFSR---GK-LNND-------TQRV---TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVG 64 (378) Q Consensus 1 M~~f~~--~~~~~~---~~-~~~~-------~~~~---~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~ 64 (378) |=+-+- ..+... .. +.+. +..+ .++ ...+++++++||+||++||++||++||++|+++.++. T Consensus 1 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~~~~~~- 78 (518) T protein:vir:10 1 MLLANGQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSL-YGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTE- 78 (518) T ss_pred CcccCceeecCchhhhhhhhhhcccccccccceecccccch-hhHHHhhhHHHHHHHHHHHHhhccCceEEEEEcCCCc- Confidence 433321 111110 00 0000 0001 111 1234668899999999999999999999999876542 Q ss_pred cccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC----------------- Q lcl|Aclame:pro 65 SDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD----------------- 127 (378) Q Consensus 65 ~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~----------------- 127 (378) .+..+|++..|+ .+||++||+++||+.++.+++++||||++++ ++..|+++++||.. T Consensus 79 ----~~~~~~~~~~Ll-~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~-r~~~G~~~~L~~l~p~~v~v~~~~~~~~~~y 152 (518) T protein:vir:10 79 ----TEESDTGYAKLL-ADPCEYLDPFAFWEWVASTLDIYGETYLAIQ-KNKSGTPEKLMPMHPSRVAIKRNSRTGRYEY 152 (518) T ss_pred ----eeccchHHHHHH-cCCCCCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEECCCceEEEEcCCCCEEEE Confidence 344567766555 6999999999999999999999999999987 67789998888731 Q ss_pred ----------CeEEEeeeEEEEEcccc-CC-ccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHH Q lcl|Aclame:pro 128 ----------DKKEYKPEELVRLTSPF-YI-NEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNT 184 (378) Q Consensus 128 ----------~~~~~~~~dvih~r~~~-~~-~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~ 184 (378) ..+.|+++||||||++. ++ ..|+||+..+.+++.. +.|++.|+|+|++++.+++++. T Consensus 153 ~~~~~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~ls~e~~ 232 (518) T protein:vir:10 153 YFQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSEAAQ 232 (518) T ss_pred EEEecCCccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHH Confidence 11357789999999642 22 3689999888776643 3467899999999999999887 Q ss_pred HHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccch--HHH Q lcl|Aclame:pro 185 QEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTAS--QEQ 257 (378) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~~--e~~ 257 (378) +++++.|++.++ +..|+|++++|++|++|++++++++++++ +.+++.+++||++|||||++|+ ++++ |++ T Consensus 233 ~~~k~~~~~~~~---G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq~ 309 (518) T protein:vir:10 233 QRLREQFDRAHS---GSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQ 309 (518) T ss_pred HHHHHHHHHHhc---CccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHH Confidence 776666666553 22688999999999999999999999995 6679999999999999999996 4443 788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhC Q lcl|Aclame:pro 258 QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMG 337 (378) Q Consensus 258 ~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g 337 (378) .++|+++||.||+.+||++||++|+++.++ .+ .+.||.+.+++.|.+++++++.+++++||+|+||+|+++| T Consensus 310 ~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~------~~--~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~G 381 (518) T protein:vir:10 310 MRAFYRDTMAIPIARIQSAMDKYVGQYWVR------KN--RMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMG 381 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccC------Cc--eEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhC Confidence 999999999999999999999999987542 22 3567778999999999999999999999999999999999 Q ss_pred CCCCC--CCCeeeecccceecccchhccC--cc--CCCCCCCC---CCCC Q lcl|Aclame:pro 338 EQPIE--GGDVYIANLNAVAVKNLSDLQG--SR--KDVTSTDE---TNNQ 378 (378) Q Consensus 338 l~p~~--gGD~~~~~~n~~~~~~~~~~~~--~~--~~~~~~~e---~~~e 378 (378) |||++ |||++++++|++|++...+... ++ +..++.+. .+++ T Consensus 382 l~pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 431 (518) T protein:vir:10 382 LPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQ 431 (518) T ss_pred CCCCCCCCCCeeeecccceecccccccccCCCCCCCCCCCCccccccccc Confidence 99996 7999999999999875433211 10 00000100 0011 No 49 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=5.2e-78 Score=444.29 Aligned_cols=360 Identities=14% Similarity=0.079 Sum_probs=268.6 Q ss_pred CCcccc--cccccc---ccc-cC-----C--ccceee--cccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccc Q lcl|Aclame:pro 1 MNLFGK--VVSFSR---GKL-NN-----D--TQRVTA--WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGS 65 (378) Q Consensus 1 M~~f~~--~~~~~~---~~~-~~-----~--~~~~~~--~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~ 65 (378) |=+-+- ..+... ..+ .+ . +..++. ......++.+++||+||++||++||++||++|+++.++. T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~~~-- 78 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTE-- 78 (518) T ss_pred CcccCceeeccchhhhhhhhhhhcccccceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCCcc-- Confidence 322221 111110 000 00 0 000000 011134568899999999999999999999999876532 Q ss_pred ccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC------------------ Q lcl|Aclame:pro 66 DTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------------ 127 (378) Q Consensus 66 ~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~------------------ 127 (378) .+..+|++.. |+.+||++||+++||+.++.+++++||||++++ ++..|+++++||.. T Consensus 79 ---~~~~~~~~~~-Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~-r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~y~ 153 (518) T protein:vir:78 79 ---TEEHDTGYAK-LLADPCEYLDPFAFWEWVASTLDIYGETYLAIQ-KNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYY 153 (518) T ss_pred ---ccccchHHHH-HHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEE-EcCCCcEEEEEEECCCceEEEEcCCCCEEEEE Confidence 2334555555 556999999999999999999999999999987 68889998888731 Q ss_pred ---------CeEEEeeeEEEEEcccc-CC-ccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHH Q lcl|Aclame:pro 128 ---------DKKEYKPEELVRLTSPF-YI-NEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQ 185 (378) Q Consensus 128 ---------~~~~~~~~dvih~r~~~-~~-~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~ 185 (378) ..+.|+++||||||++. ++ ..|+||+..+..++.. +.|++.|+|+|++++.+++++.+ T Consensus 154 ~~~~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~ls~e~~~ 233 (518) T protein:vir:78 154 FQAGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSPEAQQ 233 (518) T ss_pred EEecCCccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHH Confidence 11347789999999642 22 3589999888776643 34678999999999999998877 Q ss_pred HHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----ccch--HHHH Q lcl|Aclame:pro 186 EYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----GTAS--QEQQ 258 (378) Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~~~~--e~~~ 258 (378) ++++.|++.++ +..|+|++++|++|++|++++++++++++ +.+++++++||++|||||++|+ ++++ |+++ T Consensus 234 ~~k~~~~~~~~---G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~~ 310 (518) T protein:vir:78 234 RLREQFDRAHA---GSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQM 310 (518) T ss_pred HHHHHHHHHhc---CcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHH Confidence 77777766553 22678999999999999999999999995 5678999999999999999996 3433 7889 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCC Q lcl|Aclame:pro 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGE 338 (378) Q Consensus 259 ~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl 338 (378) ++|+++||.||+.+||++||++|+++.++ .+ .+.||.+.+++.|.+++++++.+++++||+|+||+|+++|| T Consensus 311 ~~f~~~tL~P~~~~ie~eln~~L~~~~~~------~~--~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl 382 (518) T protein:vir:78 311 RAFYRDTMAIPIARIQSAMDKYVGQYWVR------KN--RMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGL 382 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccC------cc--eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCC Confidence 99999999999999999999999976432 12 35677889999999999999999999999999999999999 Q ss_pred CCCC--CCCeeeecccceecccchhccC--cc--CCCCCCC-------CCCCC Q lcl|Aclame:pro 339 QPIE--GGDVYIANLNAVAVKNLSDLQG--SR--KDVTSTD-------ETNNQ 378 (378) Q Consensus 339 ~p~~--gGD~~~~~~n~~~~~~~~~~~~--~~--~~~~~~~-------e~~~e 378 (378) ||++ |||++++++|++|++...+... ++ +..++.+ ++..+ T Consensus 383 ~pie~~~gD~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 435 (518) T protein:vir:78 383 PRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPA 435 (518) T ss_pred CCCCCCCCceeeecccceecccccccccCCCCCCCCCCCCcccccccccCccc Confidence 9996 7999999999999875433211 10 0000000 10011 No 50 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=2.1e-78 Score=446.45 Aligned_cols=346 Identities=17% Similarity=0.204 Sum_probs=271.7 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) ||||++..+.....................++++++|++||++||++||++||++|+++. ..+|++++|| T Consensus 1 Mg~f~~~f~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~----------~~~~~l~~lL 70 (385) T protein:vir:95 1 MGLFDSVFKRHSELSWMYDLEFLQDKSKKAYLKQIALNTVVEMVARTISQSEFRVMKNNT----------KEKGTLYYLL 70 (385) T ss_pred CchhhhhhccCcccccccchhhhhccchhhhhhhHHHHHHHHHHHHHHcccceeeeecCc----------cccchHHHHH Confidence 999999754332221111111122233456678999999999999999999999997542 2469999999 Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEee------------------c--CCeEEEeeeEEEEE Q lcl|Aclame:pro 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLF------------------A--DDKKEYKPEELVRL 140 (378) Q Consensus 81 ~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~------------------~--~~~~~~~~~dvih~ 140 (378) +.+||++||+++||+.++.+++++||||++++. +. +.+...++ . ...+.|+++||||+ T Consensus 71 ~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiih~ 148 (385) T protein:vir:95 71 NVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKND-EG-HFFVADDFEKEDELGLYSHRFTNVLVNDFEFKRVFTMDDVIYL 148 (385) T ss_pred hcccCcCCCHHHHHHHHHHHHhhcCceEEEEec-CC-CeeeccccccccccccccccceeeeecccceeeeeccccEEEe Confidence 999999999999999999999999999998753 32 22211111 0 12346889999999 Q ss_pred ccccC--CccccchHHHHHHHHHH----HHhcCCcceeeeeCC--cCCHHHHHHHHHHHHHHHHHhhccccccceeEecC Q lcl|Aclame:pro 141 TSPFY--INEDTSILDNALASIQT----KLEQGKLRGLLKINA--FLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN 212 (378) Q Consensus 141 r~~~~--~~~~~~~~~~~~~~i~~----~~~~~~~~gil~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (378) |.+.. ...|.||++.+..++.. +..++.++|++.+++ .+++++.+++++.|++.+++.. .+.++++++++ T Consensus 149 ~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~~--~~~~~i~~l~~ 226 (385) T protein:vir:95 149 KYNNQKLDAFSLGLFEDYGEIFGRMIDLQMLNNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAFQ--NNTIAVVPLTE 226 (385) T ss_pred cCCCCCcccccchHHHHHHHHHHHHHHHHHhcCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhhh--hcCCceEEcCC Confidence 96433 24488999988877654 345788999998864 5778887778888877776442 23456899999 Q ss_pred Cceeeeccc------chhhhhH-HHHHHHHHHHHHHhCCCHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHhhcCC Q lcl|Aclame:pro 213 KTEIVELKK------DYSVLNK-DEIDLIKSELLTGYFMNENILLGTAS--QEQQIYFYNSTIIPLLIQLEKELTYKLIS 283 (378) Q Consensus 213 g~~~~~l~~------~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~~~--e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~ 283 (378) |++|+++++ +++++++ +.+++++++||++|||||++|+|+++ ++++.+|+++||.|++++||++||++||+ T Consensus 227 g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~~L~~ 306 (385) T protein:vir:95 227 GLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVLGEMADLEKTIESYLQFCINPLLRKIEAELNSKFFY 306 (385) T ss_pred CceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC Confidence 999999975 5567885 55689999999999999999998775 78899999999999999999999999999 Q ss_pred hhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCC--CCCCeeeecccceecccchh Q lcl|Aclame:pro 284 TNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPI--EGGDVYIANLNAVAVKNLSD 361 (378) Q Consensus 284 ~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~--~gGD~~~~~~n~~~~~~~~~ 361 (378) +.++..+ .+.||.+.+++.|.+++++++.+++++||+|+||+|+++|+||+ ||||++++|+|++|++.. T Consensus 307 ~~~~~~~-------~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~gd~~~~~~n~~~~~~~-- 377 (385) T protein:vir:95 307 QDEYLND-------DMHIKVVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPADDPELDKFIITKNLQSADAF-- 377 (385) T ss_pred hhhcccc-------eEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceecccc-- Confidence 8775422 36678889999999999999999999999999999999999999 689999999999998642 Q ss_pred ccCccCCCCCCCCCCCC Q lcl|Aclame:pro 362 LQGSRKDVTSTDETNNQ 378 (378) Q Consensus 362 ~~~~~~~~~~~~e~~~e 378 (378) ++.|+|+| T Consensus 378 ---------kgge~~~e 385 (385) T protein:vir:95 378 ---------KGGESNEE 385 (385) T ss_pred ---------cCCCCCCC Confidence 44444444 No 51 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=9.3e-78 Score=442.89 Aligned_cols=355 Identities=14% Similarity=0.179 Sum_probs=270.2 Q ss_pred CCccccccccccccccCCccc--eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQR--VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) ||||++..+.... ...+.. .........++++++|++||++||++||++||++|+++ .+.+|++++ T Consensus 1 Mg~f~~lf~~~~~--~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~----------~~~~~~~~~ 68 (395) T protein:vir:10 1 MSILEKIFKTRKD--ITYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN----------RIQKNDVYY 68 (395) T ss_pred CchhhhhhccCcc--ccccccchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC----------ccccchHHH Confidence 9999987543321 111111 11122334567899999999999999999999998743 246899999 Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--------e--------c--CCeEEEeeeEEEEE Q lcl|Aclame:pro 79 VLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--------F--------A--DDKKEYKPEELVRL 140 (378) Q Consensus 79 lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--------~--------~--~~~~~~~~~dvih~ 140 (378) +|+.+||++||+++||+.++.++++.|++|+++. ++....+...+ + . +..+.|+++||||+ T Consensus 69 ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~ 147 (395) T protein:vir:10 69 KLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVS-DSKELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYL 147 (395) T ss_pred HHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEe-cCCCeEecCCccceeEeecCcceeEEEEcCceeeeeeccccEEEE Confidence 9999999999999999999999999999988764 33222221111 1 1 12356889999999 Q ss_pred cc--ccCCccccchHHHHHHHHH----HHHhcCCcceeeeeCCc-CCHHHHHHHHHHHHHHHHHhhccccccceeEecCC Q lcl|Aclame:pro 141 TS--PFYINEDTSILDNALASIQ----TKLEQGKLRGLLKINAF-LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNK 213 (378) Q Consensus 141 r~--~~~~~~~~~~~~~~~~~i~----~~~~~~~~~gil~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 213 (378) |. +.....|.||++.+..++. .+.+++.++|+|.+++. +++++.+++++.|++.+++.. .+..+++++++| T Consensus 148 ~~~~~~~~~~G~spi~~~~~~~~~~~~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~v~~l~~g 225 (395) T protein:vir:10 148 KYNNNKVTHFVESLFEDYGKIFGRMIGAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFN--KNQLAIAPLIEG 225 (395) T ss_pred ccCCCCcccccchHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcccc--ccCcceEEcCCC Confidence 94 3334458899998877664 45678899999998765 577776666666665554321 123346678999 Q ss_pred ceeeecccchhhh-----hH-HHHHHHHHHHHHHhCCCHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHhhcCChh Q lcl|Aclame:pro 214 TEIVELKKDYSVL-----NK-DEIDLIKSELLTGYFMNENILLGTAS--QEQQIYFYNSTIIPLLIQLEKELTYKLISTN 285 (378) Q Consensus 214 ~~~~~l~~~~~~~-----~~-~~~~~~~~~Ia~~fgVPp~~l~~~~~--e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~ 285 (378) ++|+++++++.++ ++ +.+++++++||++|||||++|+++++ ++++++|+++||.|++.+||++||++||++. T Consensus 226 ~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~ 305 (395) T protein:vir:10 226 FDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQS 305 (395) T ss_pred ceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChh Confidence 9999999988765 43 44578899999999999999998876 8889999999999999999999999999988 Q ss_pred HHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC--Ceeeecccceecccchhcc Q lcl|Aclame:pro 286 RRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG--DVYIANLNAVAVKNLSDLQ 363 (378) Q Consensus 286 ~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG--D~~~~~~n~~~~~~~~~~~ 363 (378) ++..+ +.|+.+.+++.|.+++++++.+++++||+|+||+|+++|+||+||| |++++|+|++|++.....+ T Consensus 306 ~~~~~--------~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~ 377 (395) T protein:vir:10 306 MYLKD--------TRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDE 377 (395) T ss_pred hhccc--------ceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccc Confidence 76543 3466789999999999999999999999999999999999999876 9999999999998765554 Q ss_pred Ccc-CCCCCCCCCCCC Q lcl|Aclame:pro 364 GSR-KDVTSTDETNNQ 378 (378) Q Consensus 364 ~~~-~~~~~~~e~~~e 378 (378) ... ++..+++++|+. T Consensus 378 ~~~~~~~~kgg~~~~~ 393 (395) T protein:vir:10 378 KEKDENTLKGGDEDES 393 (395) T ss_pred CcccccccCCCCCCCC Confidence 322 222233333333 No 52 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=9.3e-78 Score=442.89 Aligned_cols=355 Identities=14% Similarity=0.179 Sum_probs=270.2 Q ss_pred CCccccccccccccccCCccc--eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQR--VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) ||||++..+.... ...+.. .........++++++|++||++||++||++||++|+++ .+.+|++++ T Consensus 1 Mg~f~~lf~~~~~--~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~----------~~~~~~~~~ 68 (395) T protein:vir:95 1 MSILEKIFKTRKD--ITYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN----------RIQKNDVYY 68 (395) T ss_pred CchhhhhhccCcc--ccccccchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC----------ccccchHHH Confidence 9999987543321 111111 11122334567899999999999999999999998743 246899999 Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--------e--------c--CCeEEEeeeEEEEE Q lcl|Aclame:pro 79 VLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--------F--------A--DDKKEYKPEELVRL 140 (378) Q Consensus 79 lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--------~--------~--~~~~~~~~~dvih~ 140 (378) +|+.+||++||+++||+.++.++++.|++|+++. ++....+...+ + . +..+.|+++||||+ T Consensus 69 ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~ 147 (395) T protein:vir:95 69 KLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVS-DSKELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYL 147 (395) T ss_pred HHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEe-cCCCeEecCCccceeEeecCcceeEEEEcCceeeeeeccccEEEE Confidence 9999999999999999999999999999988764 33222221111 1 1 12356889999999 Q ss_pred cc--ccCCccccchHHHHHHHHH----HHHhcCCcceeeeeCCc-CCHHHHHHHHHHHHHHHHHhhccccccceeEecCC Q lcl|Aclame:pro 141 TS--PFYINEDTSILDNALASIQ----TKLEQGKLRGLLKINAF-LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNK 213 (378) Q Consensus 141 r~--~~~~~~~~~~~~~~~~~i~----~~~~~~~~~gil~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 213 (378) |. +.....|.||++.+..++. .+.+++.++|+|.+++. +++++.+++++.|++.+++.. .+..+++++++| T Consensus 148 ~~~~~~~~~~G~spi~~~~~~~~~~~~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~v~~l~~g 225 (395) T protein:vir:95 148 KYNNNKVTHFVESLFEDYGKIFGRMIGAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFN--KNQLAIAPLIEG 225 (395) T ss_pred ccCCCCcccccchHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcccc--ccCcceEEcCCC Confidence 94 3334458899998877664 45678899999998765 577776666666665554321 123346678999 Q ss_pred ceeeecccchhhh-----hH-HHHHHHHHHHHHHhCCCHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHhhcCChh Q lcl|Aclame:pro 214 TEIVELKKDYSVL-----NK-DEIDLIKSELLTGYFMNENILLGTAS--QEQQIYFYNSTIIPLLIQLEKELTYKLISTN 285 (378) Q Consensus 214 ~~~~~l~~~~~~~-----~~-~~~~~~~~~Ia~~fgVPp~~l~~~~~--e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~ 285 (378) ++|+++++++.++ ++ +.+++++++||++|||||++|+++++ ++++++|+++||.|++.+||++||++||++. T Consensus 226 ~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~ 305 (395) T protein:vir:95 226 FDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQS 305 (395) T ss_pred ceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChh Confidence 9999999988765 43 44578899999999999999998876 8889999999999999999999999999988 Q ss_pred HHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC--Ceeeecccceecccchhcc Q lcl|Aclame:pro 286 RRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG--DVYIANLNAVAVKNLSDLQ 363 (378) Q Consensus 286 ~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG--D~~~~~~n~~~~~~~~~~~ 363 (378) ++..+ +.|+.+.+++.|.+++++++.+++++||+|+||+|+++|+||+||| |++++|+|++|++.....+ T Consensus 306 ~~~~~--------~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~ 377 (395) T protein:vir:95 306 MYLKD--------TRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDE 377 (395) T ss_pred hhccc--------ceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccc Confidence 76543 3466789999999999999999999999999999999999999876 9999999999998765554 Q ss_pred Ccc-CCCCCCCCCCCC Q lcl|Aclame:pro 364 GSR-KDVTSTDETNNQ 378 (378) Q Consensus 364 ~~~-~~~~~~~e~~~e 378 (378) ... ++..+++++|+. T Consensus 378 ~~~~~~~~kgg~~~~~ 393 (395) T protein:vir:95 378 KEKDENTLKGGDEDES 393 (395) T ss_pred CcccccccCCCCCCCC Confidence 322 222233333333 No 53 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=9.3e-78 Score=442.89 Aligned_cols=355 Identities=14% Similarity=0.179 Sum_probs=270.2 Q ss_pred CCccccccccccccccCCccc--eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQR--VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) ||||++..+.... ...+.. .........++++++|++||++||++||++||++|+++ .+.+|++++ T Consensus 1 Mg~f~~lf~~~~~--~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~----------~~~~~~~~~ 68 (395) T protein:vir:10 1 MSILEKIFKTRKD--ITYMLDLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN----------RIQKNDVYY 68 (395) T ss_pred CchhhhhhccCcc--ccccccchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC----------ccccchHHH Confidence 9999987543321 111111 11122334567899999999999999999999998743 246899999 Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--------e--------c--CCeEEEeeeEEEEE Q lcl|Aclame:pro 79 VLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--------F--------A--DDKKEYKPEELVRL 140 (378) Q Consensus 79 lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--------~--------~--~~~~~~~~~dvih~ 140 (378) +|+.+||++||+++||+.++.++++.|++|+++. ++....+...+ + . +..+.|+++||||+ T Consensus 69 ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~ 147 (395) T protein:vir:10 69 KLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVS-DSKELLIADSFYREEYALYDDIFKDVTVKDYTYQRTFTMQEVIYL 147 (395) T ss_pred HHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEe-cCCCeEecCCccceeEeecCcceeEEEEcCceeeeeeccccEEEE Confidence 9999999999999999999999999999988764 33222221111 1 1 12356889999999 Q ss_pred cc--ccCCccccchHHHHHHHHH----HHHhcCCcceeeeeCCc-CCHHHHHHHHHHHHHHHHHhhccccccceeEecCC Q lcl|Aclame:pro 141 TS--PFYINEDTSILDNALASIQ----TKLEQGKLRGLLKINAF-LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNK 213 (378) Q Consensus 141 r~--~~~~~~~~~~~~~~~~~i~----~~~~~~~~~gil~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 213 (378) |. +.....|.||++.+..++. .+.+++.++|+|.+++. +++++.+++++.|++.+++.. .+..+++++++| T Consensus 148 ~~~~~~~~~~G~spi~~~~~~~~~~~~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~v~~l~~g 225 (395) T protein:vir:10 148 KYNNNKVTHFVESLFEDYGKIFGRMIGAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFN--KNQLAIAPLIEG 225 (395) T ss_pred ccCCCCcccccchHHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcccc--ccCcceEEcCCC Confidence 94 3334458899998877664 45678899999998765 577776666666665554321 123346678999 Q ss_pred ceeeecccchhhh-----hH-HHHHHHHHHHHHHhCCCHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHhhcCChh Q lcl|Aclame:pro 214 TEIVELKKDYSVL-----NK-DEIDLIKSELLTGYFMNENILLGTAS--QEQQIYFYNSTIIPLLIQLEKELTYKLISTN 285 (378) Q Consensus 214 ~~~~~l~~~~~~~-----~~-~~~~~~~~~Ia~~fgVPp~~l~~~~~--e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~ 285 (378) ++|+++++++.++ ++ +.+++++++||++|||||++|+++++ ++++++|+++||.|++.+||++||++||++. T Consensus 226 ~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~ 305 (395) T protein:vir:10 226 FDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQS 305 (395) T ss_pred ceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChh Confidence 9999999988765 43 44578899999999999999998876 8889999999999999999999999999988 Q ss_pred HHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC--Ceeeecccceecccchhcc Q lcl|Aclame:pro 286 RRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG--DVYIANLNAVAVKNLSDLQ 363 (378) Q Consensus 286 ~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG--D~~~~~~n~~~~~~~~~~~ 363 (378) ++..+ +.|+.+.+++.|.+++++++.+++++||+|+||+|+++|+||+||| |++++|+|++|++.....+ T Consensus 306 ~~~~~--------~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~ 377 (395) T protein:vir:10 306 MYLKD--------TRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDE 377 (395) T ss_pred hhccc--------ceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccccccccccc Confidence 76543 3466789999999999999999999999999999999999999876 9999999999998765554 Q ss_pred Ccc-CCCCCCCCCCCC Q lcl|Aclame:pro 364 GSR-KDVTSTDETNNQ 378 (378) Q Consensus 364 ~~~-~~~~~~~e~~~e 378 (378) ... ++..+++++|+. T Consensus 378 ~~~~~~~~kgg~~~~~ 393 (395) T protein:vir:10 378 KEKDENTLKGGDEDES 393 (395) T ss_pred CcccccccCCCCCCCC Confidence 322 222233333333 No 54 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=2.8e-77 Score=440.31 Aligned_cols=356 Identities=16% Similarity=0.131 Sum_probs=268.8 Q ss_pred CCccccccccccccccC----Cccce--eecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNN----DTQRV--TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~ 74 (378) ||||++...+....... .+..+ ........++.+++|++||++||++||++||+++++++ ..+| T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~~~----------~~~~ 70 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNLTDTVWCSIPSEKLKELSIKKWAIDSCANKIANTLSCAEVLTYEKGE----------EVRK 70 (395) T ss_pred CchHHHHHhhhcccccccccccchhhccccccchhhhhhhHHHHHHHHHHHHHHhhCceeeccCCc----------cccc Confidence 99999887765432111 11111 11122345678899999999999999999999987432 2569 Q ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE----------EEe-----ecC--CeEEEeeeEE Q lcl|Aclame:pro 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL----------DLL-----FAD--DKKEYKPEEL 137 (378) Q Consensus 75 ~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~----------~~~-----~~~--~~~~~~~~dv 137 (378) +++++|+.+|||+||+++||+.++.+++++||||+++. ++..+.+. ... ..+ ..+.|+++|| T Consensus 71 ~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ev 149 (395) T protein:vir:40 71 KNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQ-DEYIYVADSFTKNDKSLYENTYTEVTLKDLTLKKEFKESEV 149 (395) T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEe-cCceeecCCccccccccccceeeeeeecCceeeeeeccccE Confidence 99999999999999999999999999999999999875 22211110 001 111 1345889999 Q ss_pred EEEcccc-CCccccch-HHH----HHHHHHHHHhcCCcceeee--eCCcCCHHHHHHHHHHHHHHHHHhhccccccceeE Q lcl|Aclame:pro 138 VRLTSPF-YINEDTSI-LDN----ALASIQTKLEQGKLRGLLK--INAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTP 209 (378) Q Consensus 138 ih~r~~~-~~~~~~~~-~~~----~~~~i~~~~~~~~~~gil~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (378) ||||.+. .+....+. ... +..++..++.++.++|++. .+..+++++.+++++.|++.+++.. .+++++++ T Consensus 150 ih~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v 227 (395) T protein:vir:40 150 LHLTLNNESIKSIIDGFYLLYGDLLTAAVNKYKKLNSRKIIVKLKAMFGQTPEAEEKLRLMLSERMKKFL--AEGDSALP 227 (395) T ss_pred EEeecCCCCccccchhHHHHHHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHHHHhh--ccCCceee Confidence 9999432 22222222 222 2234455666777776655 4667889988888999988887543 35678999 Q ss_pred ecCCceeeecccchhhhhHHH-HHHH---HHHHHHHhCCCHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHhhcCC Q lcl|Aclame:pro 210 VDNKTEIVELKKDYSVLNKDE-IDLI---KSELLTGYFMNENILLGTAS--QEQQIYFYNSTIIPLLIQLEKELTYKLIS 283 (378) Q Consensus 210 l~~g~~~~~l~~~~~~~~~~~-~~~~---~~~Ia~~fgVPp~~l~~~~~--e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~ 283 (378) +++|++|++++++++++++.+ .++. .++||++|||||++|+++++ +++..+|+++||.||+++||++||++||+ T Consensus 228 l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~kLl~ 307 (395) T protein:vir:40 228 VEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAKGDTVGLSEQVNSFLMFSINPIAEMFTDEGNRKFYG 307 (395) T ss_pred cCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 999999999999999998644 3554 47999999999999998876 78899999999999999999999999999 Q ss_pred hhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecccceecccchh Q lcl|Aclame:pro 284 TNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSD 361 (378) Q Consensus 284 ~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~ 361 (378) +.++..|+ .+.||.+.++++|.+++++++.+++++||+|+||+|+++|+||++| ||++++|+|++|++...+ T Consensus 308 ~~~~~~g~------~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~ 381 (395) T protein:vir:40 308 RDSVLERT------YMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTKNYAPLGENEE 381 (395) T ss_pred hhhhcCCc------eEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCceeeecccccccccccc Confidence 98876653 3567778999999999999999999999999999999999999965 999999999999986544 Q ss_pred ccCccCCCCCCCCCCC Q lcl|Aclame:pro 362 LQGSRKDVTSTDETNN 377 (378) Q Consensus 362 ~~~~~~~~~~~~e~~~ 377 (378) .+. .++++++++|+ T Consensus 382 ~~k--gge~~~~~~~~ 395 (395) T protein:vir:40 382 DLK--GGDINENKGDS 395 (395) T ss_pred ccC--CCCCCCCcCCC Confidence 322 12223333444 No 55 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=1.5e-76 Score=436.21 Aligned_cols=339 Identities=15% Similarity=0.159 Sum_probs=259.8 Q ss_pred CCcccccccccccc-ccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK-LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEV 79 (378) Q Consensus 1 M~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (378) ||||++..+..... ...+.. .....+...++.+++|++||++||+++|++||++|++. ...+|+++++ T Consensus 1 Mg~f~~l~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~~~----------~~~~~~l~~l 69 (376) T protein:vir:78 1 MGFFSELFKRNKEIEWMWDLD-FLEDKTTKVYLKKMALNTCVKHIARTIAKSDFRLKNGE----------TSVRDKLYYK 69 (376) T ss_pred CchhhhhhccCCccccccchh-hccccchhhhhhhHHHHHHHHHHHHhhcccceeecccc----------ccccchHHHH Confidence 99999875432211 111111 12223344667889999999999999999999998642 2357999999 Q ss_pred HhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCC------------------eEEEeeeEEEEEc Q lcl|Aclame:pro 80 LNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADD------------------KKEYKPEELVRLT 141 (378) Q Consensus 80 L~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~------------------~~~~~~~dvih~r 141 (378) |+.+|||+||+++||+.++.+++++||||++++ ++..|.+..++|... ...|+++|||||| T Consensus 70 l~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~~ 148 (376) T protein:vir:78 70 LNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLS-DTDDFLIADSYVRKEFAFFPDVFEGVTVKDYRYNRNFSMDDVIFLE 148 (376) T ss_pred HhhccccCCCHHHHHHHHHHHHhHcCcEEEEEE-eCCCeeeccceeecccceeeeeeeeeeeecceeeeeeccccEEEec Confidence 999999999999999999999999999999986 677788777766421 2357889999999 Q ss_pred cccC-CccccchH-HHHHHH----HHHHHhcCCccee--eeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCC Q lcl|Aclame:pro 142 SPFY-INEDTSIL-DNALAS----IQTKLEQGKLRGL--LKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNK 213 (378) Q Consensus 142 ~~~~-~~~~~~~~-~~~~~~----i~~~~~~~~~~gi--l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 213 (378) .... +.....++ ..+... +..++.++.++++ +..++.+++++.+++++.|++.+++.. .+.++++++++| T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~--~~~~~v~~l~~g 226 (376) T protein:vir:78 149 YGNERLSAFTDGMFEDYGELFGKMIRAQMRNFQIRGAVNFKMAGVADKDKQTKLQEYIDKVYASFN--NNEIAIVPQLEG 226 (376) T ss_pred cCCCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCceeEEEccCCCCCHHHHHHHHHHHHHHhcccc--ccCcceEEcCCC Confidence 5322 22222222 222222 2334455555554 445677888888888888877765332 344568889999 Q ss_pred ceeeecccchhhh-----hH-HHHHHHHHHHHHHhCCCHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHhhcCChh Q lcl|Aclame:pro 214 TEIVELKKDYSVL-----NK-DEIDLIKSELLTGYFMNENILLGTAS--QEQQIYFYNSTIIPLLIQLEKELTYKLISTN 285 (378) Q Consensus 214 ~~~~~l~~~~~~~-----~~-~~~~~~~~~Ia~~fgVPp~~l~~~~~--e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~ 285 (378) ++|+++++++.++ |+ +..++++++||++|||||++|+++++ |++.++|+++||.|++++||++||++||++. T Consensus 227 ~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~ 306 (376) T protein:vir:78 227 FNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLHGDMADLSNNMKAYMEYCIDPLTKKLEDELNAKLFTFS 306 (376) T ss_pred ceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc Confidence 9999999988665 54 44578899999999999999998876 8889999999999999999999999999986 Q ss_pred HHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC--Ceeeecccceecccchhcc Q lcl|Aclame:pro 286 RRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG--DVYIANLNAVAVKNLSDLQ 363 (378) Q Consensus 286 ~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG--D~~~~~~n~~~~~~~~~~~ 363 (378) ++. +.|+.+.+++.|.+++++++.+++++||+|+||+|+++|+||+||| |++++|+|++|++..++.. T Consensus 307 ~~~----------~~~~~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~d~~~~~~n~~~~~~~~e~g 376 (376) T protein:vir:78 307 EFL----------AGEHIKIIHKKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPELDKYLITKNYQSADEGGEDG 376 (376) T ss_pred cce----------ecccchhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccCceehhccccCC Confidence 532 3345566899999999999999999999999999999999999986 9999999999987432211 No 56 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=1.6e-75 Score=430.58 Aligned_cols=352 Identities=11% Similarity=0.102 Sum_probs=262.8 Q ss_pred cccccccc--ccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHHhccC Q lcl|Aclame:pro 7 VVSFSRGK--LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSP 84 (378) Q Consensus 7 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~P 84 (378) +.++..+. +..-........+...++.+++||+||++||++||++||++|+.+. ....+|++++||+.+| T Consensus 1 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~--------~~~~~~~l~~lL~~~P 72 (723) T protein:vir:94 1 MTTFPSGAGGWNAWSADSVFGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPDG--------ELDELHPLSQLWNVMP 72 (723) T ss_pred CcccccCCCccccccccccccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCCC--------ccchhhHHHHHHhhCC Confidence 33332211 1110000111122345678999999999999999999999986431 1235799999999999 Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEEEe--CCCceEEEEeec------------------------------CCeEEE Q lcl|Aclame:pro 85 KGERNSMDFWRKVIKKLLSAPYVDLYAVFD--DNTGELLDLLFA------------------------------DDKKEY 132 (378) Q Consensus 85 N~~~s~~~f~~~~~~~~ll~Gna~~~~~~~--~~~g~~~~~~~~------------------------------~~~~~~ 132 (378) ||+||+++||+.++.+++++||+|+++++. +..|.+.+++|. +..+.| T Consensus 73 N~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~G~~~~~ 152 (723) T protein:vir:94 73 NRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGYVIERTDGVRVPV 152 (723) T ss_pred CCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEEEEEecCceeEEe Confidence 999999999999999999999999998752 345777666542 123457 Q ss_pred eeeEEEEEcc--ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 133 KPEELVRLTS--PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQ 199 (378) Q Consensus 133 ~~~dvih~r~--~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~ 199 (378) +++||||||. +.++..|+||+..++++|.. +.|+++|+|||+.+ .+++++.++++++|++.+++ T Consensus 153 ~~~dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~-~l~~e~~~~~~~~~~~~~~G-- 229 (723) T protein:vir:94 153 LADEMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLG-DMDEQTFTKTVAAFRSQVEG-- 229 (723) T ss_pred cccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC-CCCHHHHHHHHHHHHHHhhc-- Confidence 7899999995 45677799999988887753 34678899999986 58898888888888877653 Q ss_pred ccccccceeEec----------CCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc----chHHHHHHHHHH Q lcl|Aclame:pro 200 EGSSYNGLTPVD----------NKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ASQEQQIYFYNS 264 (378) Q Consensus 200 ~~~~~~~~~~l~----------~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~----~~e~~~~~f~~~ 264 (378) ..|+|++++|+ .|++|++++++++|+++ +.+++.+++||++|||||++|++. +.+++.++|+++ T Consensus 230 -~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~~st~sN~e~~~~~f~~~ 308 (723) T protein:vir:94 230 -VQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLGGSTYENQAEAKAAVWTE 308 (723) T ss_pred -hhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCCCCCcccHHHHHHHHHHH Confidence 36788888885 59999999999999996 567899999999999999999753 237788999999 Q ss_pred HHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) Q Consensus 265 ~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG 344 (378) ||.||++.||++||++||+.. | ++++|+|+...++++|.+++++++.+++++||+|+||+|+++||||+||| T Consensus 309 tL~P~~~~ie~~ln~~Ll~~~----g----~~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gG 380 (723) T protein:vir:94 309 TLIPQMEVMASITDLQLLPDI----G----WTVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGG 380 (723) T ss_pred HHHHHHHHHHHHHhHhhcccc----c----CceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 999999999999999999742 2 34678888889999999999999999999999999999999999999998 Q ss_pred C--eeeecc--cceecccchhc--cCcc---C--CCCCCCCCCCC Q lcl|Aclame:pro 345 D--VYIANL--NAVAVKNLSDL--QGSR---K--DVTSTDETNNQ 378 (378) Q Consensus 345 D--~~~~~~--n~~~~~~~~~~--~~~~---~--~~~~~~e~~~e 378 (378) | .++.|. |++|.+..... ++.. . ....+++...| T Consensus 381 d~~~~~~p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~ 425 (723) T protein:vir:94 381 IGQMTLTPYRAQFAPAPAPAPAVEEGAARMLALLERVAADRPLPE 425 (723) T ss_pred cccceeccccccccCCCCCCccchhhhHhhhhhccccccccCcCC Confidence 7 445653 45444332211 1000 0 00000011111 No 57 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=2.2e-75 Score=429.91 Aligned_cols=346 Identities=15% Similarity=0.101 Sum_probs=251.9 Q ss_pred CCccccccccccccccCCcc--ceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQ--RVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) ||||++.........+.... .+. ......++++++|++||++||++||++||++|++... ...+|++++ T Consensus 1 Mgl~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~--------~~~~~~~~~ 71 (395) T protein:vir:96 1 MGILDFFSFKKSGTLSDDDSGSTTS-EKLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKL--------TENQKDWLY 71 (395) T ss_pred CcchhhhcCCCCccccccccccchh-hhcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCcc--------ccccchHHH Confidence 99999986665544433222 222 2234566788999999999999999999999875321 346899999 Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE-------Eee--------cC--CeEEEeeeEEEEEc Q lcl|Aclame:pro 79 VLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD-------LLF--------AD--DKKEYKPEELVRLT 141 (378) Q Consensus 79 lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~-------~~~--------~~--~~~~~~~~dvih~r 141 (378) ||+.+|||+||+++||+.++.+++++||||++++ ++..+.+.. +++ .+ ..+.++++|||||| T Consensus 72 lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~dvih~k 150 (395) T protein:vir:96 72 WINTKANPNQSASQFWVEVVQKLLVDGETLIFVI-PGKGIYVADAFTQDKKLSGNKFKVSRVQGQTYEKIFTFDQVIYLK 150 (395) T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEE-cCCceecCCccccccccccceeeeeeeccceeeeEeccCceEEec Confidence 9999999999999999999999999999999986 443322211 111 11 13458899999999 Q ss_pred cccC-----Cccccch-HHHHHHHHHH-------------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 142 SPFY-----INEDTSI-LDNALASIQT-------------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGS 202 (378) Q Consensus 142 ~~~~-----~~~~~~~-~~~~~~~i~~-------------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (378) .+.. +....+. ...+..++.. +.+++.+.+++..++...++ +.++.|++.+.... . T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~ 225 (395) T protein:vir:96 151 NDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGRQPK---SDKDFFKRTIEKIR--T 225 (395) T ss_pred ccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchhhHH---HHHHHHHHHHHHhh--c Confidence 5322 1111111 1111111111 22455667777666555443 34444444444333 3 Q ss_pred cccceeEecCCceeeecccchhhhhH-HHHHH------HHHHHHHHhCCCHHHhcccch--HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 SYNGLTPVDNKTEIVELKKDYSVLNK-DEIDL------IKSELLTGYFMNENILLGTAS--QEQQIYFYNSTIIPLLIQL 273 (378) Q Consensus 203 ~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~------~~~~Ia~~fgVPp~~l~~~~~--e~~~~~f~~~~l~P~~~~i 273 (378) +.++++++++|++|+++++++.++++ +..++ ..++||++|||||++|+++++ |++.++|+++||.||+++| T Consensus 226 ~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~~~~sn~e~~~~~f~~~~L~P~~~~i 305 (395) T protein:vir:96 226 ESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHGDIADNQKNYELLLEGPIESLITNI 305 (395) T ss_pred CCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCccHHHHHHHHHHHHHHHHHHHH Confidence 45668899999999999999998875 33333 357999999999999998764 7788999999999999999 Q ss_pred HHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecc Q lcl|Aclame:pro 274 EKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANL 351 (378) Q Consensus 274 e~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~ 351 (378) |++|+++||++.++..+. + |+.+.++++|.+++++++.+++++||+|+||+|+++|+||+|| ||++++|+ T Consensus 306 e~~l~~~Ll~~~e~~~~~------~--f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~gD~~~~~~ 377 (395) T protein:vir:96 306 VDGLEYAIFDKSETLEGS------F--IKVTGLKNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGLGKVLYMTK 377 (395) T ss_pred HHHHHhhcCChhhhcCce------e--EeecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecc Confidence 999999999998765542 2 4446899999999999999999999999999999999999977 99999999 Q ss_pred cceecccchhccCccCCCCCCC Q lcl|Aclame:pro 352 NAVAVKNLSDLQGSRKDVTSTD 373 (378) Q Consensus 352 n~~~~~~~~~~~~~~~~~~~~~ 373 (378) |++|+++ ++|+++++.++ T Consensus 378 N~~~~~~----~gge~~~~~~~ 395 (395) T protein:vir:96 378 NYESVLE----RGGEVDEEVET 395 (395) T ss_pred cceechh----ccCCCCCCCCC Confidence 9999864 23332222222 No 58 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=1.3e-74 Score=425.61 Aligned_cols=349 Identities=14% Similarity=0.111 Sum_probs=252.9 Q ss_pred CCccccccccccccccC--CccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNN--DTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) ||||++.........+. .+..+.. .....++.+++|++||++||++||++||++|+.... ...+|++++ T Consensus 1 MGlf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~--------~~~~~~~~~ 71 (395) T protein:vir:98 1 MGILDFFSFKKSGTLSDDDSGSTTSE-KLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKL--------TENQKDWLY 71 (395) T ss_pred CcchhhhcCCCcccccccccchhhhh-hcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCc--------ccccchHHH Confidence 99999986554443322 2222222 223456788999999999999999999999975322 245799999 Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE-------Eee--------cCC--eEEEeeeEEEEEc Q lcl|Aclame:pro 79 VLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD-------LLF--------ADD--KKEYKPEELVRLT 141 (378) Q Consensus 79 lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~-------~~~--------~~~--~~~~~~~dvih~r 141 (378) ||+.+|||+||+++||+.++.+++++||||+++++ +..+.+.. +++ .+. .+.|+++|||||| T Consensus 72 lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~k 150 (395) T protein:vir:98 72 WINTKANPNQSASQFWVEVIQKLLVDGETLIFVIP-GKGIYVADSFTQDKKISGSQFKVSRVQGQTYEKTFTFDQVIYLK 150 (395) T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEe-CCceecCCcccccccccCcccceeeecCceeeeEecCccEEEec Confidence 99999999999999999999999999999999874 43222111 111 111 3568899999999 Q ss_pred ccc-CCcc-ccchHHHHHH----HHH---------HHHhcCCcceeeeeCCcC-CHHHHHHHHHHHHHHHHHhhcccccc Q lcl|Aclame:pro 142 SPF-YINE-DTSILDNALA----SIQ---------TKLEQGKLRGLLKINAFL-DIDNTQEYREKALTTIKNMQEGSSYN 205 (378) Q Consensus 142 ~~~-~~~~-~~~~~~~~~~----~i~---------~~~~~~~~~gil~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (378) +.. +... +.+++..... ++. .+.+.+...+++...... +++..++.++.+++.+++.. .+.+ T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 228 (395) T protein:vir:98 151 NDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTVEKIR--TESV 228 (395) T ss_pred CCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHHhhhh--cCCc Confidence 532 2222 2222221111 111 122344555565555443 34444556666666665433 3456 Q ss_pred ceeEecCCceeeecccc------hhhhhHH-HHHHHHHHHHHHhCCCHHHhcccch--HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 206 GLTPVDNKTEIVELKKD------YSVLNKD-EIDLIKSELLTGYFMNENILLGTAS--QEQQIYFYNSTIIPLLIQLEKE 276 (378) Q Consensus 206 ~~~~l~~g~~~~~l~~~------~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~~~~~--e~~~~~f~~~~l~P~~~~ie~~ 276 (378) +++++++|++|++++++ +.++++. .+++++++||++|||||++|+++++ |++.++|+++||.||+++||++ T Consensus 229 ~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~~~sn~e~~~~~f~~~tl~P~~~~ie~~ 308 (395) T protein:vir:98 229 VGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLHGDIADNQKNYELLLEGPIESLITNIVDG 308 (395) T ss_pred ceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHH Confidence 68899999999999865 4455653 3477889999999999999998876 7788999999999999999999 Q ss_pred HHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecccce Q lcl|Aclame:pro 277 LTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANLNAV 354 (378) Q Consensus 277 l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~ 354 (378) ||++||++.++..|. + |+.+.++++|.+++++++.+++++||+|+||+|+++|+||+|| ||++++|+|++ T Consensus 309 l~~kll~~~~~~~g~------~--f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~gD~~~~~~n~~ 380 (395) T protein:vir:98 309 LEYAIFDKSETLQGS------F--IKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIGLPELPDGLGKVLYMTKNYE 380 (395) T ss_pred HHHhcCChhhhcCcc------e--eeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccce Confidence 999999998875542 2 4446899999999999999999999999999999999999977 99999999999 Q ss_pred ecccchhccCccCCCCCCC Q lcl|Aclame:pro 355 AVKNLSDLQGSRKDVTSTD 373 (378) Q Consensus 355 ~~~~~~~~~~~~~~~~~~~ 373 (378) |++. ++|+.++++++ T Consensus 381 ~~~~----~gge~~~~~~~ 395 (395) T protein:vir:98 381 SVLE----RGGEVDEEVET 395 (395) T ss_pred eccc----ccCCCCCCCCC Confidence 9863 23332222222 No 59 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=1.5e-74 Score=425.34 Aligned_cols=305 Identities=15% Similarity=0.195 Sum_probs=255.9 Q ss_pred hccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec- Q lcl|Aclame:pro 48 ITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA- 126 (378) Q Consensus 48 ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~- 126 (378) ||++||++|++++ ..+||+++||+.|||++||+++||+.++.+++++||||++++ ++..|+++++||. T Consensus 1 ia~lp~~~~~~~~----------~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~-r~~~G~~~~L~~l~ 69 (348) T protein:vir:93 1 MASLPLKMYEDYK----------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQPSKLFLLN 69 (348) T ss_pred CcccceEeEecCc----------CcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEEc Confidence 9999999998543 357999999999999999999999999999999999999987 6788999888873 Q ss_pred -----------------------CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHHH--------H-hcCCccee Q lcl|Aclame:pro 127 -----------------------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQTK--------L-EQGKLRGL 172 (378) Q Consensus 127 -----------------------~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~~--------~-~~~~~~gi 172 (378) +..+.|+++||||||++ .+...|.|++..+..++... . ++..+.++ T Consensus 70 ~~~v~~~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 149 (348) T protein:vir:93 70 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFM 149 (348) T ss_pred CCceEEEEeCCCcEEEEEEEcCCCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCCCceeE Confidence 12345789999999964 34455889998888776532 1 23345678 Q ss_pred eeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc Q lcl|Aclame:pro 173 LKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG 251 (378) Q Consensus 173 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~ 251 (378) ++.++.+++++.++++++|++.+ .++++++++++|++|++++++++++++ +.+++++++||++|||||.+|++ T Consensus 150 ~~~~~~l~~e~~~~~~~~~~~~~------~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~ 223 (348) T protein:vir:93 150 LKYGSNVSTEKRQQVLEDFKQYY------EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA 223 (348) T ss_pred EecCCCCCHHHHHHHHHHHHHHh------hcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC Confidence 88899999999888888887654 356789999999999999999999995 55789999999999999999974 Q ss_pred c------chHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 252 T------ASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGP 325 (378) Q Consensus 252 ~------~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G 325 (378) . +.|+++++|+++||.|+++.||++||++||++.++..|. .++||.+.+++.|.+++++++.+++++| T Consensus 224 ~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~------~i~fd~~~l~~~d~~~~a~~~~~~~~~G 297 (348) T protein:vir:93 224 RSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSG 297 (348) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcc------eEEeechhhhccCHHHHHHHHHHHHhCC Confidence 2 237888999999999999999999999999998876553 3677888999999999999999999999 Q ss_pred CCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 326 IFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 326 ~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++|+||+|+++|+||+||||++++++|++|++...+.+.. .++|+++++| T Consensus 298 ~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~---~~gg~~n~~~ 347 (348) T protein:vir:93 298 YYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKS---LKGGDKNVNE 347 (348) T ss_pred CCCHHHHHHHhCCCCCCCcCeEeecccccccccchhhccc---ccCCCCCcCC Confidence 9999999999999999999999999999999876555432 2333334444 No 60 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=3.7e-74 Score=423.18 Aligned_cols=356 Identities=13% Similarity=0.135 Sum_probs=266.7 Q ss_pred CCcccccccccc-c--c-----ccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceecc Q lcl|Aclame:pro 1 MNLFGKVVSFSR-G--K-----LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMA 72 (378) Q Consensus 1 M~~f~~~~~~~~-~--~-----~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~ 72 (378) |||++..+...+ + . ..+.............+...++|++||++||++||++||+++++....... ..+. T Consensus 1 mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~~~~---~~~~ 77 (403) T protein:vir:10 1 MGFKSWITEKLNPGQRIIRDMEPVSHRTNRKPFTTGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIVTYA---NGVK 77 (403) T ss_pred CcchhhhhhccchhhhhhhcccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhCceeEeecccccccc---cccc Confidence 999998764322 1 0 111111111111123345678999999999999999999998776543322 2346 Q ss_pred CchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe-------------CCCceEEEEeecCCeEEEeeeEEEE Q lcl|Aclame:pro 73 GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFD-------------DNTGELLDLLFADDKKEYKPEELVR 139 (378) Q Consensus 73 ~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~-------------~~~g~~~~~~~~~~~~~~~~~dvih 139 (378) .|++++||+.||||+||+++||+.++.+++++||||+++... ...+.+++.+..+++..|+++||+| T Consensus 78 ~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~eiih 157 (403) T protein:vir:10 78 TKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDGTSLYHVPAALMQVEADANKFIKKFIFNNQINYRVDEIIF 157 (403) T ss_pred cchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeCceeEeecCcceEEEEcCCceEEEEEecCceeecccceEE Confidence 799999999999999999999999999999999999876311 0112222233334556788999999 Q ss_pred Eccc------cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 140 LTSP------FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGS 202 (378) Q Consensus 140 ~r~~------~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (378) ||.. .++..|.||+..+++++.. +.+++.|+|++++++.+++++.++++++|++.++ +.. T Consensus 158 ~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~~~---g~~ 234 (403) T protein:vir:10 158 IKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETDEILNKKLRERKQEELQLDYN---PST 234 (403) T ss_pred ecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHHhC---Ccc Confidence 9842 2445688999888876643 3467789999999999999988877777777663 336 Q ss_pred cccceeEecCCceeeeccc--chhhhhH-HHHHHHHHHHHHHhCCCHHHhc-ccc--hHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 SYNGLTPVDNKTEIVELKK--DYSVLNK-DEIDLIKSELLTGYFMNENILL-GTA--SQEQQIYFYNSTIIPLLIQLEKE 276 (378) Q Consensus 203 ~~~~~~~l~~g~~~~~l~~--~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~-~~~--~e~~~~~f~~~~l~P~~~~ie~~ 276 (378) |+|+++++++|++|+++++ +++++++ +.+++++++||++|||||++|+ +++ .+++.++|+++||.||+++||++ T Consensus 235 n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~sn~e~~~~~f~~~tl~P~~~~ie~~ 314 (403) T protein:vir:10 235 GQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDGGNNANIRPNIELFYYMTIIPMLNKLTSS 314 (403) T ss_pred cCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH Confidence 8899999999999999985 5678885 5678999999999999999996 333 47888999999999999999999 Q ss_pred HHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC--CCCeeeecccce Q lcl|Aclame:pro 277 LTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE--GGDVYIANLNAV 354 (378) Q Consensus 277 l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~--gGD~~~~~~n~~ 354 (378) |+++|. ++++|+++...+++.|.+++++++.+++++|++|+||+|+++|+||+| +||++++|+|++ T Consensus 315 l~~~L~------------~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~~~d~~~~p~n~~ 382 (403) T protein:vir:10 315 LTFFFG------------YKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSELNLEPLDDEQMNKIRIPANVA 382 (403) T ss_pred HHHhcC------------ceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCcccccccccccccc Confidence 999882 234455554456899999999999999999999999999999999995 699999999998 Q ss_pred ecccchhccCccCCC-CCCCCCC Q lcl|Aclame:pro 355 AVKNLSDLQGSRKDV-TSTDETN 376 (378) Q Consensus 355 ~~~~~~~~~~~~~~~-~~~~e~~ 376 (378) ....... +++.++ +.+.|+| T Consensus 383 ~~~~~~~--~~e~~~~~~~~~g~ 403 (403) T protein:vir:10 383 GSATGVS--GQEGGRPKGSTEGD 403 (403) T ss_pred cccccCC--CCcCCCCCCCcCCC Confidence 6543222 122222 2223333 No 61 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=1.9e-74 Score=424.74 Aligned_cols=352 Identities=11% Similarity=0.097 Sum_probs=263.4 Q ss_pred CCccccccccccccc-----cCCcccee-----ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL-----NNDTQRVT-----AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~~~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) ||||++.+.+..... .....+.. ...+...++++++|++||++||++||++||++|+++. .+ T Consensus 1 MGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~v~~~~g--------~~ 72 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAEKRGYLDNVLGKSIRYSGVYVTDSNILQSSDVYELLQDISNQMVLADIVVEDEFG--------NE 72 (394) T ss_pred CchhhhhhhhccCCCCchhhhhhhhhcccccCccccChhhhhccHHHHHHHHHHHHhhcccceEEEcCCC--------cc Confidence 999998765432111 01100000 1122345678899999999999999999999987532 13 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE----------EeecCCeEEEeeeEEEEE Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD----------LLFADDKKEYKPEELVRL 140 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~----------~~~~~~~~~~~~~dvih~ 140 (378) +.+|+++.||. +|||+||+++||+.++.+++++||||+++. ++..+.+.. +++..+.++|+++||||+ T Consensus 73 ~~~~~~~~Ll~-~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiih~ 150 (394) T protein:vir:62 73 IKDDIALQILR-NPNNYLTQSEFIKLMTNTYLLEGETFPILN-GAQIHLASNVFTELDDNLVEHFNIGGHEIPPCMIRHV 150 (394) T ss_pred cchhhHHHHhc-cCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-cceeeccccceEEECCceEEEEeeCCEEechhheEEe Confidence 56899988875 899999999999999999999999999975 333232211 122345678999999999 Q ss_pred cc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHH--HHHHHHHHHHHHHHHhhccccccc Q lcl|Aclame:pro 141 TS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDID--NTQEYREKALTTIKNMQEGSSYNG 206 (378) Q Consensus 141 r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 206 (378) |+ +.++..|.||+..+..++.. +.+++.|+|++++++.++++ +.++++++|++.+++ ..++|+ T Consensus 151 r~~~~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~g---~~n~g~ 227 (394) T protein:vir:62 151 KNIGADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAILDQLES---IDEARS 227 (394) T ss_pred cCcCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHHHHHhcc---ccccCc Confidence 95 34555688999888776642 34678999999999887644 334555555555432 257788 Q ss_pred eeEecCCc--eeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc---cchHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 207 LTPVDNKT--EIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG---TASQEQQIYFYNSTIIPLLIQLEKELTYK 280 (378) Q Consensus 207 ~~~l~~g~--~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~---~~~e~~~~~f~~~~l~P~~~~ie~~l~~~ 280 (378) +++++.|. ++++++.++.++++ +.+++++++||++|||||.+|++ ++.|+++++|+++||.|++++||++||++ T Consensus 228 ~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~k 307 (394) T protein:vir:62 228 VKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTELIKEDIEKAMMYIHNKAVRPIMKNFEDHLSLL 307 (394) T ss_pred eeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 88887665 66688889999986 55689999999999999999976 34578899999999999999999999999 Q ss_pred cCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCC--CCCCeeeecccceeccc Q lcl|Aclame:pro 281 LISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPI--EGGDVYIANLNAVAVKN 358 (378) Q Consensus 281 Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~--~gGD~~~~~~n~~~~~~ 358 (378) ||++.++. .+.|+||...+++ ..++++++.+++++||||+||+|+++|+||+ ||||++++++|++|++. T Consensus 308 ll~~~~~~-------~~~~~fd~~~~~~--~~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~gd~~~~~~n~~~~~~ 378 (394) T protein:vir:62 308 FYAQNSGK-------RIKFKINILDFVT--YSNKTNIGYNLVRTAITSPDNVADMLGFPKQNTKESQAIYISNDVTEIGK 378 (394) T ss_pred hcCccccC-------ceEEEechhhhcC--HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeecccccccccc Confidence 99986532 2456676666654 4578899999999999999999999999999 67999999999999864 Q ss_pred chhccCccCCCCCCCCCCC Q lcl|Aclame:pro 359 LSDLQGSRKDVTSTDETNN 377 (378) Q Consensus 359 ~~~~~~~~~~~~~~~e~~~ 377 (378) .. ..+++.++|++++| T Consensus 379 ~~---~~~~~~kgge~~en 394 (394) T protein:vir:62 379 KE---ATDGSLGGGEENEN 394 (394) T ss_pred cc---cccccCCCCCCCCC Confidence 32 23344444555455 No 62 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=9.5e-74 Score=420.92 Aligned_cols=361 Identities=12% Similarity=0.049 Sum_probs=264.4 Q ss_pred CCcccccccc----ccccc----cCCccceee------cccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGKVVSF----SRGKL----NNDTQRVTA------WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~~~~~----~~~~~----~~~~~~~~~------~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) =+++++.... ..++. ...+..++. ......+..+++||+||++||++||++||++|++..++.... T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~iA~lp~~v~~~~~~g~~~~ 81 (460) T protein:vir:10 2 ANRIIRALRELTGLDNKFNDAFIKYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAKTVAVPYTIKVVKDTKAYQQ 81 (460) T ss_pred chhHHHHHhhhhccCCCchHHHHHhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHhhhhCceEEEeccCCccchh Confidence 2333332211 11111 000111110 012234567899999999999999999999999887764321 Q ss_pred c----------------------ceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe---CCCceEE Q lcl|Aclame:pro 67 T----------------------LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFD---DNTGELL 121 (378) Q Consensus 67 ~----------------------~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~---~~~g~~~ 121 (378) . ......+++..+|+.+|||+||+++||+.++.+++++||||+++++. +..|++. T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~~G~~~ 161 (460) T protein:vir:10 82 LNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGINAGVPS 161 (460) T ss_pred hhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCccCceeE Confidence 1 01123445556677799999999999999999999999999998753 2357888 Q ss_pred EEeecC------------------------------CeEEEeeeEEEEEccccC-------CccccchHHHHHHHHHH-- Q lcl|Aclame:pro 122 DLLFAD------------------------------DKKEYKPEELVRLTSPFY-------INEDTSILDNALASIQT-- 162 (378) Q Consensus 122 ~~~~~~------------------------------~~~~~~~~dvih~r~~~~-------~~~~~~~~~~~~~~i~~-- 162 (378) ++||.. ..+.|+++||||||.+.. +..|+||+..+++++.. T Consensus 162 ~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~~~~ 241 (460) T protein:vir:10 162 QMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNINSQN 241 (460) T ss_pred EEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHHHHHHHHHHHHH Confidence 887621 124678899999995322 23578999888877643 Q ss_pred ---------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHH Q lcl|Aclame:pro 163 ---------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEID 232 (378) Q Consensus 163 ---------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~ 232 (378) +.+++.+.+++..++.+++++.++++++|++.++ +..|+++++++++|++|++++++++++++ +.++ T Consensus 242 ~~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~---g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~ 318 (460) T protein:vir:10 242 STIDNNVKTMQNGGVFGFIHGGSTGLTQPQADSLKQRLTEMDK---SPDRLSQIAGASGEIAFTKISLNTDELKPFDYLK 318 (460) T ss_pred HHHHHHHHHHhcCCCcceeeecCCCCCHHHHHHHHHHHHHHhc---CccccCCceecCCCceEEEccCChhHHHHHHHHH Confidence 3466788999999999999988777777777654 22578899999999999999999999995 6679 Q ss_pred HHHHHHHHHhCCCHHHhcc----c----chHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecch Q lcl|Aclame:pro 233 LIKSELLTGYFMNENILLG----T----ASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) Q Consensus 233 ~~~~~Ia~~fgVPp~~l~~----~----~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~ 304 (378) +++++||++|||||++|+. + +.|++.++|++.||.||+++||++||++|+++.++..+ ++++|+++.. T Consensus 319 ~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~----~~i~~d~~~l 394 (460) T protein:vir:10 319 YDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYEN----AVIEWDISEL 394 (460) T ss_pred HHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCC----ceEEeecchh Confidence 9999999999999999962 2 34788999999999999999999999999998765443 4455555443 Q ss_pred hhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCC--CCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 305 LFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPI--EGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 305 ~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~--~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ..++.|.+++++ ++++|++|+||+|+++|+||+ ||||++++|+|++|++..+++ ..++.++.|+ T Consensus 395 ~~l~~d~~~~~~----~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~------~~~~~~nq~~ 460 (460) T protein:vir:10 395 PEMQTDMVAMAS----WLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPSNKVRIDDVSNN------LIDSAFNQNQ 460 (460) T ss_pred hhHHHHHHHHHH----HHhCCCCCHHHHHHHhCCCCCCCCCCCeeeecccccchhhcccc------cCCCcccCCC Confidence 336666666654 568999999999999999999 579999999999999865432 2222222223 No 63 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=7.1e-73 Score=416.12 Aligned_cols=363 Identities=10% Similarity=0.086 Sum_probs=258.7 Q ss_pred CCccccccc-----------------------c-----ccc-cccCCccceeecccchhhhhhHHHHHHHHHHHhhhccC Q lcl|Aclame:pro 1 MNLFGKVVS-----------------------F-----SRG-KLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKV 51 (378) Q Consensus 1 M~~f~~~~~-----------------------~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 51 (378) .=+|.++.- + +.. ...++...+........++.+++|++||++||++||++ T Consensus 62 ~~~~~~~~~~kk~~i~~pfkkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsL 141 (945) T protein:vir:10 62 IIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSK 141 (945) T ss_pred eeeehhhhHHHhhcccccccccccchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccC Confidence 222222111 0 000 01111111112223445677899999999999999999 Q ss_pred ceEEEEeccccccccc-ceeccCchHHHHHhccCCCCCCHHH----HHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec Q lcl|Aclame:pro 52 EFNHVKYKKSDVGSDT-LISMAGSDLDEVLNWSPKGERNSMD----FWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA 126 (378) Q Consensus 52 p~~~~~~~~~~~~~~~-~~~~~~~~l~~lL~~~PN~~~s~~~----f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~ 126 (378) |+++|++++++..... .....+|++++||+ +||++||+++ |++.++.+++++||||++++ ++..|++++++|. T Consensus 142 PlklYrr~edG~~~~~~kk~~~~hpL~~LL~-rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIi-Rd~~G~ii~L~pL 219 (945) T protein:vir:10 142 ELEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKI-RDEQGNLVAITPV 219 (945) T ss_pred ceEEEEecccCcccccccccccchHHHHHHh-CCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEE Confidence 9999999877654322 23456899999997 9999999998 55678899999999999986 6788999888874 Q ss_pred CC-------------------------eEEEeeeEEE-EEcccc-CCc---cccchHHHHHHHHHH-----------HH- Q lcl|Aclame:pro 127 DD-------------------------KKEYKPEELV-RLTSPF-YIN---EDTSILDNALASIQT-----------KL- 164 (378) Q Consensus 127 ~~-------------------------~~~~~~~dvi-h~r~~~-~~~---~~~~~~~~~~~~i~~-----------~~- 164 (378) .. ...|+++|+| |+|++. ++. .|+||+..+++++.. +. T Consensus 220 dPs~Vti~~ddDG~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~Fsk 299 (945) T protein:vir:10 220 DGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRK 299 (945) T ss_pred CCcceEEEEcCCCcEEEEEEEecCCceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 21 1235566765 556542 222 278899888776643 22 Q ss_pred hcCCcceeeeeC----------CcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHH Q lcl|Aclame:pro 165 EQGKLRGLLKIN----------AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDL 233 (378) Q Consensus 165 ~~~~~~gil~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~ 233 (378) ++++|+|+|+++ +.+++++.+ ++++.|++..+|.++++++++++|++|++++++++++++ +.+++ T Consensus 300 NGa~PsGILsvkg~~~~d~k~~~~LseEq~e----rlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~DaQfLEsrkf 375 (945) T protein:vir:10 300 GGSIPEGILAIEPPSYKEGDIYPQLSREQLE----SIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEF 375 (945) T ss_pred CCCccceEEEecCccccccccccccCHHHHH----HHHHHHHHHhCCcccccceecCCCceEEEccCChhHHHHHHHHHH Confidence 356899999875 345565554 455555555567788889999999999999999999995 66799 Q ss_pred HHHHHHHHhCCCHHHhcc------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhh Q lcl|Aclame:pro 234 IKSELLTGYFMNENILLG------TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFK 307 (378) Q Consensus 234 ~~~~Ia~~fgVPp~~l~~------~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~ 307 (378) ++++||++|||||++|+. ++.+++.++|+++||.|++.+||++||++|++..+ ..+++++|+ .+. T Consensus 376 s~eeIArAFGVPP~lLG~~e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~e-------g~~i~fdFd--~ld 446 (945) T protein:vir:10 376 VARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRN-------EKDIKLWFK--EDD 446 (945) T ss_pred HHHHHHHHhCCCHHHcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------CceeEEEec--chh Confidence 999999999999999962 34578899999999999999999999999875422 233455554 456 Q ss_pred hcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecc-cceecccchhccC-----------ccCCCCCCCCC Q lcl|Aclame:pro 308 FATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANL-NAVAVKNLSDLQG-----------SRKDVTSTDET 375 (378) Q Consensus 308 ~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~-n~~~~~~~~~~~~-----------~~~~~~~~~e~ 375 (378) +.|.+++++++.+++++|+||+||+|+++|+||+||||+++++. |++|.+...+.+. +.+...++++. T Consensus 447 l~D~ksraEal~kli~sGiLTiNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~ 526 (945) T protein:vir:10 447 LEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGV 526 (945) T ss_pred ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccccCCCCcccccCCCCCCCCCCCCC Confidence 67899999999999999999999999999999999999999997 5667664332211 11111122121 Q ss_pred CCC Q lcl|Aclame:pro 376 NNQ 378 (378) Q Consensus 376 ~~e 378 (378) +++ T Consensus 527 dEn 529 (945) T protein:vir:10 527 DEN 529 (945) T ss_pred CCC Confidence 111 No 64 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=7.9e-73 Score=415.88 Aligned_cols=342 Identities=15% Similarity=0.143 Sum_probs=266.3 Q ss_pred CCccccccccccccccCCccce--------eecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRV--------TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMA 72 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~ 72 (378) |+||++.++..+.....+...+ ....+...++++++|++||++||++||++||++ T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~v~~ia~~ia~~p~~~----------------- 63 (397) T protein:vir:38 1 MPLLKLNKSHSQGFSLNDPDWVNFLTGGEAQKYVSADTALKNSDIFSLIMQLSGDLAMVRYTS----------------- 63 (397) T ss_pred CcchhhhhcccCcccCCchhhhhhhcCCcCCceechHHhhccHHHHHHHHHHHHHHhhCcccc----------------- Confidence 9999987665444333222111 111233456788999999999999999999853 Q ss_pred CchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC------------------------- Q lcl|Aclame:pro 73 GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------------------- 127 (378) Q Consensus 73 ~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~------------------------- 127 (378) +|++.++|+.+|||+||+++||+.++.+++++||||++++ ++..|+++.++|.. T Consensus 64 ~~~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~-r~~~g~~~~l~~l~~~~v~i~~~~~~~~~~y~~~~~~~~ 142 (397) T protein:vir:38 64 ESDRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRH-KNTNGVDLSWEYLRPSQVQPMLLQDGSGLIYNINFDEPA 142 (397) T ss_pred cccHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEE-ECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecccc Confidence 3556777888999999999999999999999999999987 67788888887631 Q ss_pred --CeEEEeeeEEEEEccccC--CccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHH Q lcl|Aclame:pro 128 --DKKEYKPEELVRLTSPFY--INEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREKAL 192 (378) Q Consensus 128 --~~~~~~~~dvih~r~~~~--~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~ 192 (378) ..+.|+++||||+|.+.. ...|.|++..+..++.. +.+++.|+|++++++.+++++.+++++.|+ T Consensus 143 ~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~e~~~~~~~~~~ 222 (397) T protein:vir:38 143 IGYMENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGGLLDAETRIARSKE 222 (397) T ss_pred ccceeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHH Confidence 124578899999996433 23588999888776643 346789999999999999887766666664 Q ss_pred HHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc----chHHHHHHHHHHHHH Q lcl|Aclame:pro 193 TTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ASQEQQIYFYNSTII 267 (378) Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~----~~e~~~~~f~~~~l~ 267 (378) ...++.|+++++++++|++|+++++++.++++ +.+++.+++||++|||||++|+++ ++.+|...||+.||. T Consensus 223 ----~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~e~~~~~~~~~l~ 298 (397) T protein:vir:38 223 ----ISKQIHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQSSITQISGQYAKSLN 298 (397) T ss_pred ----HHhcccccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHH Confidence 34566788999999999999999999999995 567999999999999999999763 233566789999999 Q ss_pred HHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCee Q lcl|Aclame:pro 268 PLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVY 347 (378) Q Consensus 268 P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~ 347 (378) |++..||++||++|+++.+ ++...++++|.+++++++++++++||+|+||+|+++|++|++|||.+ T Consensus 299 P~~~~ie~~ln~~l~~~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~ 364 (397) T protein:vir:38 299 RYVQAIVGELNDKLHANIS--------------ANIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAKDLP 364 (397) T ss_pred HHHHHHHHHHHHhccChhc--------------ccccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccc Confidence 9999999999999997532 22234567899999999999999999999999999999999999987 Q ss_pred eecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 348 IANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 348 ~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .......+.......+++.++.+++++.+++ T Consensus 365 ~~~~~~~~~~~~~~~~~g~~~~~~~~e~~~~ 395 (397) T protein:vir:38 365 DPEKEPQQAIQLIQQEGGENDGNNSDERGSD 395 (397) T ss_pred cccccccccccccccccCCCCCCCCCCCCCC Confidence 6666555554444444555444444444444 No 65 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=2.3e-72 Score=413.35 Aligned_cols=324 Identities=8% Similarity=0.009 Sum_probs=256.2 Q ss_pred CCcccccccc------------------------cccccc------C------Cccc----ee----ecccchhhhhhHH Q lcl|Aclame:pro 1 MNLFGKVVSF------------------------SRGKLN------N------DTQR----VT----AWQNEAVEYTSAF 36 (378) Q Consensus 1 M~~f~~~~~~------------------------~~~~~~------~------~~~~----~~----~~~~~~~~~~~~~ 36 (378) ||||...+++ .++... . .+.+ +. ...+...++.+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~ 80 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDV 80 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHH Confidence 9999877663 011000 0 0000 00 0012234456789 Q ss_pred HHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC Q lcl|Aclame:pro 37 VTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN 116 (378) Q Consensus 37 v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~ 116 (378) ||+||++||++||++|+++|+.++ ..+.+..+|+.+||++||+++||+.++.++++ ||+|++++.++. T Consensus 81 v~acV~~Ia~~iA~lpl~~~~~~~-----------~~~~~~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~i~r~~ 148 (409) T protein:vir:83 81 AWACIDLNASVLSSMPIYRMRNGR-----------IIDSVAWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLPMAHGS 148 (409) T ss_pred HHHHHHHHHHhhccCceEEeeCCc-----------cccchhhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEEEEECC Confidence 999999999999999999997532 23456778999999999999999999999988 999999887889 Q ss_pred CceEEEEeecCC-----------eEE------EeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhc Q lcl|Aclame:pro 117 TGELLDLLFADD-----------KKE------YKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQ 166 (378) Q Consensus 117 ~g~~~~~~~~~~-----------~~~------~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~ 166 (378) .|.+++++|... .+. +.++||||||.+ .+...|+||++.+..++.. +.|+ T Consensus 149 ~G~~~~L~pl~p~~v~v~~~~~g~~~y~~~~~~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng 228 (409) T protein:vir:83 149 DGYPIRFRVVPPWLVNVELKKGARREYRIGGLNVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETG 228 (409) T ss_pred CCcEEEEEEECCcceEEEEcCCceEEEEEccccCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 999999987432 222 235799999953 4445689999988877643 3467 Q ss_pred CCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCcee-eecccchhhhhH-HHHHHHHHHHHHHhCC Q lcl|Aclame:pro 167 GKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEI-VELKKDYSVLNK-DEIDLIKSELLTGYFM 244 (378) Q Consensus 167 ~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~~l~~~~~~~~~-~~~~~~~~~Ia~~fgV 244 (378) ++|+|++++++.+++++.++++++|++.+ . .|+|+++++.+|+++ ++++++++++++ +.+++++++||++||| T Consensus 229 a~p~gil~~~~~ls~e~~~~~~~~~~~~~----~-~nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgV 303 (409) T protein:vir:83 229 GVPLYWLGVERRLSETEAVDLMDRWIESR----S-KYAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGV 303 (409) T ss_pred CCcceEeecCCCCCHHHHHHHHHHHHHhh----C-CccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCC Confidence 89999999999999998888888886643 2 478889999999997 578999999995 6679999999999999 Q ss_pred CHHHhcc-------cc--hHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHH Q lcl|Aclame:pro 245 NENILLG-------TA--SQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELI 315 (378) Q Consensus 245 Pp~~l~~-------~~--~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~ 315 (378) ||++|+. ++ .|++.++|+++||.||+++||++||++||++.+ + ++|+.+.++++|.++|+ T Consensus 304 Pp~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~~---------~--~~f~~~~llr~d~~~r~ 372 (409) T protein:vir:83 304 PPFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPSPQ---------H--LELNRDDYTRPSLVERA 372 (409) T ss_pred CHHHccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc---------E--EEeehhhhhccCHHHHH Confidence 9999961 22 378899999999999999999999999997532 3 56777899999999999 Q ss_pred HHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccc Q lcl|Aclame:pro 316 DLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNA 353 (378) Q Consensus 316 ~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~ 353 (378) +++++++++||||+||+|+++||||++|||++. .... T Consensus 373 ~~~~~~~~~G~lT~NE~R~~~glpp~~ggd~l~-~~gv 409 (409) T protein:vir:83 373 TAYKIMIEAGVMEPNEARAMERLHSEAAAVRLS-GGGV 409 (409) T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccC-CCCC Confidence 999999999999999999999999999999872 1111 No 66 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=3.8e-71 Score=406.65 Aligned_cols=354 Identities=12% Similarity=0.053 Sum_probs=266.0 Q ss_pred CCcccccccccccccc------------------CCccce--------------------eecccchhhhhhHHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLN------------------NDTQRV--------------------TAWQNEAVEYTSAFVTNIHN 42 (378) Q Consensus 1 M~~f~~~~~~~~~~~~------------------~~~~~~--------------------~~~~~~~~~~~~~~v~~~i~ 42 (378) ||||++..+...+... +.+.++ ....+...++.+++|++||+ T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~i~ 80 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFACML 80 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHHHHH Confidence 9999998765432210 000000 00122334678899999999 Q ss_pred HHHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC------ Q lcl|Aclame:pro 43 KIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN------ 116 (378) Q Consensus 43 ~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~------ 116 (378) +||++||++||++|+++.. +..++.+|+++.||. +||++||+++||+.++.+++++||||+++++ +. T Consensus 81 ~Ia~~ia~lp~~~~~~~~~-----~~~~~~~~~~~~L~~-~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r-~~~g~l~~ 153 (466) T protein:vir:81 81 VRQLVFSSVRFRWQRLRDG-----KPSDTFGSRDLQILE-TPWKGGTTQDMLSRMIQDADLAGNSYWTIVD-GEFVRMRP 153 (466) T ss_pred HHHHhhccCceEEEEecCC-----ceeeccccHHHHHhh-CCCCCCCHHHHHHHHHHHHHhcCCeEEEEEe-cCcccccc Confidence 9999999999999987532 334567888888775 9999999999999999999999999999874 43 Q ss_pred --CceEEEEeecC-----------------------------CeEEEeeeEEEEEcc---ccCCccccchHHHHHHHHHH Q lcl|Aclame:pro 117 --TGELLDLLFAD-----------------------------DKKEYKPEELVRLTS---PFYINEDTSILDNALASIQT 162 (378) Q Consensus 117 --~g~~~~~~~~~-----------------------------~~~~~~~~dvih~r~---~~~~~~~~~~~~~~~~~i~~ 162 (378) .|.+.+++|.. ..+.|+++||||||. +.++..|.||+..+++++.. T Consensus 154 ~~~g~~~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~ 233 (466) T protein:vir:81 154 DWVDVVVEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRA 233 (466) T ss_pred ccCcceeEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHHH Confidence 35567776631 123578899999994 35566789999988877643 Q ss_pred -----------HHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HH Q lcl|Aclame:pro 163 -----------KLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DE 230 (378) Q Consensus 163 -----------~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~ 230 (378) +.+++.|+|++++++.+++++.+++++.|++.++ +..|+++++++++|++|++++++++++++ +. T Consensus 234 ~~a~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~---g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~ 310 (466) T protein:vir:81 234 DQAMSKHQAKFFDNGATVNLVIKHNPMADPAAVKKWADEVNSKHA---GVDNAWKNLNLYPGADADVVGSNLQEIDFKNV 310 (466) T ss_pred HHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHHHHHHHHHHHhc---CccccccceEcCCCceEEEccCChhHHHHHHH Confidence 3467899999999999999887777777777664 23678899999999999999999999995 56 Q ss_pred HHHHHHHHHHHhCCCHHHhc-------ccc--hHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEe Q lcl|Aclame:pro 231 IDLIKSELLTGYFMNENILL-------GTA--SQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIV 301 (378) Q Consensus 231 ~~~~~~~Ia~~fgVPp~~l~-------~~~--~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~ 301 (378) +++++++||++|||||++|+ +++ .|++.++|+++||.||+++||++|+++|+++.++. .+.++| T Consensus 311 ~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~-------~~~~~f 383 (466) T protein:vir:81 311 RGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDV-------RLWYDA 383 (466) T ss_pred HHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCc-------ceEEEe Confidence 79999999999999999995 232 37889999999999999999999999999875532 234778 Q ss_pred cchhhhhcCHHHHHHH-------HHHHHhCCCCCHHHHHHHhCCCCCCCCCeeee-cccceecccchhccC-----ccCC Q lcl|Aclame:pro 302 DNQLFKFATLKELIDL-------YHENINGPIFTQNQLLVKMGEQPIEGGDVYIA-NLNAVAVKNLSDLQG-----SRKD 368 (378) Q Consensus 302 d~~~l~~~d~~~~~~~-------~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~-~~n~~~~~~~~~~~~-----~~~~ 368 (378) +.+.++++|.++|+++ +..++++|+ |+||+|+ ++++||.+++ +.++.|++.....+. .+.+ T Consensus 384 ~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g~-t~nE~r~-----~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (466) T protein:vir:81 384 DDVPFLREDEKDAADIQKVRAETINTLITAGY-EPESVVA-----AVNSGDLRLLKHTGLTSVQLLPPGVSASASSDTPT 457 (466) T ss_pred cchhhhccCHHHHHHHHHHHHHHHHHHHHcCC-Chhhccc-----cccCCccccccCCCcchhhhcccccccccCCCCcc Confidence 8899999999999876 667889996 9999995 5568887544 456666554322211 1112 Q ss_pred CCCCCCCCC Q lcl|Aclame:pro 369 VTSTDETNN 377 (378) Q Consensus 369 ~~~~~e~~~ 377 (378) .++++++.| T Consensus 458 ~~Gg~~ngn 466 (466) T protein:vir:81 458 SGGADDNGN 466 (466) T ss_pred cCCCCcCCC Confidence 223333333 No 67 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=3.1e-68 Score=390.71 Aligned_cols=328 Identities=15% Similarity=0.156 Sum_probs=245.1 Q ss_pred CCcccccccccccc---cc-CCccc--------eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK---LN-NDTQR--------VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~~~~~~---~~-~~~~~--------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) ||||++.....+.. .. ..... .....+...+++.++|++||++||++||++||++++ T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~v~~----------- 69 (385) T protein:vir:10 1 MGLLTPRNFNKRKAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVASAHFKTEN----------- 69 (385) T ss_pred CccccchhcccccccccccccchhhhhhhccccCccccCHHHhhccHHHHHHHHHHHHHHhhCceeeec----------- Confidence 99998653222111 00 00000 011223345677899999999999999999998853 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe----------------CCCceEEEEeec--CCeE Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFD----------------DNTGELLDLLFA--DDKK 130 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~----------------~~~g~~~~~~~~--~~~~ 130 (378) |+...||+ +|||+||+++||+.++.+++++||||++++++ +..|..+.++.. +..+ T Consensus 70 -----~~~~~ll~-~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 143 (385) T protein:vir:10 70 -----TATLNRLE-SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPQM 143 (385) T ss_pred -----cchhhhhh-cCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCceeEeecCCceEEEEEcCCceEEEEEEcCCceEE Confidence 56777886 89999999999999999999999999987632 111222222222 2346 Q ss_pred EEeeeEEEEEccc----cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCC-HHHHHHHHHHHHHH Q lcl|Aclame:pro 131 EYKPEELVRLTSP----FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLD-IDNTQEYREKALTT 194 (378) Q Consensus 131 ~~~~~dvih~r~~----~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~-~~~~~~~~~~~~~~ 194 (378) .|+++||||||+. .+...|.|++..++.++.. +.++++++|++++++.+. +++.+++++.| T Consensus 144 ~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~~~~--- 220 (385) T protein:vir:10 144 VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEF--- 220 (385) T ss_pred EEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHH--- Confidence 7999999999952 2234588999888877643 345778999999998765 55555555545 Q ss_pred HHHhhccccccceeEecCCceeeecccchhhhh-H-HHHHHHHHHHHHHhCCCHHHhccc------ch-HHHHHHHHHHH Q lcl|Aclame:pro 195 IKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-K-DEIDLIKSELLTGYFMNENILLGT------AS-QEQQIYFYNST 265 (378) Q Consensus 195 ~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~-~~~~~~~~~Ia~~fgVPp~~l~~~------~~-e~~~~~f~~~~ 265 (378) ++..++.|+++++++++|++|+++++++.+++ + +.+++++++||++|||||++|++. ++ -+|...|+..| T Consensus 221 -~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~~ 299 (385) T protein:vir:10 221 -EKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLAN 299 (385) T ss_pred -HHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHHH Confidence 44556678999999999999999999999998 4 457999999999999999999742 12 23556677789 Q ss_pred HHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC-- Q lcl|Aclame:pro 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG-- 343 (378) Q Consensus 266 l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g-- 343 (378) |.|+++.||++|+++|+++ +++|+.+.+++.|.+++++++.+++++|++|+||+|+++|++|+|+ T Consensus 300 l~P~~~~ie~~l~~~l~~~-------------~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~ 366 (385) T protein:vir:10 300 LNSYVNPIVDELRLKMNAP-------------DLELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDN 366 (385) T ss_pred HHHHHHHHHHHHHHhhCCc-------------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCC Confidence 9999999999999999863 2667888999999999999999999999999999999999999974 Q ss_pred CCeeeecccceecccchhccCccCCCCCCCCCCC Q lcl|Aclame:pro 344 GDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNN 377 (378) Q Consensus 344 GD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~ 377 (378) ||.+.+|.|.+ +.|+++|| T Consensus 367 ~~~~~~~~~~~---------------~~g~~~dn 385 (385) T protein:vir:10 367 LPEFKPLTTQV---------------KGGDEGDN 385 (385) T ss_pred CccccCccccc---------------CCCCCCCC Confidence 56777666642 22333333 No 68 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=1e-66 Score=382.33 Aligned_cols=361 Identities=14% Similarity=0.111 Sum_probs=253.7 Q ss_pred CCcccccccccc-ccccCCcccee---------ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVSFSR-GKLNNDTQRVT---------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) |++.+....+.. ....+. ..+. ...+.++....+.|++|+.+|+.++|++||+|++++.+.... +... T Consensus 63 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~-~~~~ 140 (574) T protein:vir:80 63 IGEMSVNPGYKTKPSIRNS-QDLHKTLKKFGNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPT-SHDI 140 (574) T ss_pred hhhccccccccCcCccCCc-ccHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCcc-chhh Confidence 344333222211 111110 1110 011233444556789999999999999999999886654322 3345 Q ss_pred ccCchHHHHHhc---cCCCCC-CHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCC------------------ Q lcl|Aclame:pro 71 MAGSDLDEVLNW---SPKGER-NSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADD------------------ 128 (378) Q Consensus 71 ~~~~~l~~lL~~---~PN~~~-s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~------------------ 128 (378) ...|+|.+||.. .|||++ |+.+||+.++.+++++||+|++++ ++..|+|+++||... T Consensus 141 ~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~-r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~ 219 (574) T protein:vir:80 141 ANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKV-FDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGE 219 (574) T ss_pred hhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEEcCccccccCce Confidence 567999999864 366775 788999999999999999999987 677899999887421 Q ss_pred ----------eEEEeeeEEEEEcc-ccC----CccccchHHHHHHHHHH-----------HHhcCCcceeeeeCC--cCC Q lcl|Aclame:pro 129 ----------KKEYKPEELVRLTS-PFY----INEDTSILDNALASIQT-----------KLEQGKLRGLLKINA--FLD 180 (378) Q Consensus 129 ----------~~~~~~~dvih~r~-~~~----~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~--~l~ 180 (378) .+.|+++||||+|. +.+ +..|+||+..++.++.. +.+++.|+|+|.+++ .++ T Consensus 220 ~y~~~~~g~~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls 299 (574) T protein:vir:80 220 RFVQVIDNRIVAKFNERELAFAVRNPRADIEVGQYGYPELEIALKQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQS 299 (574) T ss_pred EEEEEeCCceEEEEccccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCC Confidence 23467889999983 322 33488999888776643 346788999998864 478 Q ss_pred HHHHHHHHHHHHHHHHHhhccccccce-eEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc------- Q lcl|Aclame:pro 181 IDNTQEYREKALTTIKNMQEGSSYNGL-TPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------- 251 (378) Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~------- 251 (378) +++.+++++.|++.++ +..|+|++ +++++|++|+++++++.++++ +.+++++++||++|||||++|+- T Consensus 300 ~e~~~~lk~~~~~~~~---G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~ 376 (574) T protein:vir:80 300 QQALDIFRREWRSSLA---GINGSWQIPVVSAEDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDPAEINFPNNGGAT 376 (574) T ss_pred HHHHHHHHHHHHHHhc---cccccccceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccccccc Confidence 8888888888877664 23678886 555789999999999999995 56799999999999999999962 Q ss_pred ---------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHH Q lcl|Aclame:pro 252 ---------TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENI 322 (378) Q Consensus 252 ---------~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~ 322 (378) .+.|+++++|++.||.|++++||++||++||+..+ . .+.+.|+...+++.+.+ ++ +.+++ T Consensus 377 gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~------~--~~~~~f~~~d~~~~~~~--~~-~~~~~ 445 (574) T protein:vir:80 377 GSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEFG------E--KYQFQFRGGDLSAQLDK--LK-IIEQE 445 (574) T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC------C--ceEEEecccchhhHHHH--HH-HHHHH Confidence 23478889999999999999999999999996532 1 23455655544443322 22 24578 Q ss_pred hCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCC------------CCCCCC------------CCC Q lcl|Aclame:pro 323 NGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDV------------TSTDET------------NNQ 378 (378) Q Consensus 323 ~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~------------~~~~e~------------~~e 378 (378) .+||||+||+|+++||||+||||++++|+|+++++.....+...... .+.++. +.| T Consensus 446 ~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 525 (574) T protein:vir:80 446 GKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSGGDVEQPEPEEPKDSQNDTDV 525 (574) T ss_pred hCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhccccccccccCCCCCCCCCCCCCCccccccc Confidence 89999999999999999999999999999999997553322111000 000000 000 No 69 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=8.1e-67 Score=382.93 Aligned_cols=328 Identities=14% Similarity=0.124 Sum_probs=242.9 Q ss_pred CCcccccccccc-----ccccCC-ccc------eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSR-----GKLNND-TQR------VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~~~~-----~~~~~~-~~~------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) ||||++.....+ ....+. +.. -..+.+...++.+++|++||++||++||++||+++ T Consensus 1 Mg~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~------------ 68 (383) T protein:vir:10 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTE------------ 68 (383) T ss_pred CCcccccccccccccccccccchhhhhhhccCccccccchhHhhcchHHHHHHHHHHHhhccCceeec------------ Confidence 999986422111 111110 000 01122334457789999999999999999999875 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe----------------CCCceEEEEeec--CCeE Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFD----------------DNTGELLDLLFA--DDKK 130 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~----------------~~~g~~~~~~~~--~~~~ 130 (378) +|+...||+ +||++||+++||+.++.+++++||||++++.+ +..+.++.+... +..+ T Consensus 69 ----~~~~~~ll~-~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 143 (383) T protein:vir:10 69 ----NTATLNRLE-SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQNLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKM 143 (383) T ss_pred ----ccchhhhhh-CCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCceeEeecCcceEEEEEcCCceEEEEEEcCCceEE Confidence 356677886 89999999999999999999999999987631 111222222222 2356 Q ss_pred EEeeeEEEEEcccc----CCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCC-HHHHHHHHHHHHHH Q lcl|Aclame:pro 131 EYKPEELVRLTSPF----YINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLD-IDNTQEYREKALTT 194 (378) Q Consensus 131 ~~~~~dvih~r~~~----~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~-~~~~~~~~~~~~~~ 194 (378) +|+++||||||+.. ....|+|++..+..++.. +.+++.|+|++++++.+. +++.+++++.| T Consensus 144 ~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~--- 220 (383) T protein:vir:10 144 VLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEF--- 220 (383) T ss_pred EEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHH--- Confidence 78999999999532 233588999888776642 346788999999998775 55555555555 Q ss_pred HHHhhccccccceeEecCCceeeecccchhhhh-H-HHHHHHHHHHHHHhCCCHHHhccc------c-hHHHHHHHHHHH Q lcl|Aclame:pro 195 IKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-K-DEIDLIKSELLTGYFMNENILLGT------A-SQEQQIYFYNST 265 (378) Q Consensus 195 ~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~-~~~~~~~~~Ia~~fgVPp~~l~~~------~-~e~~~~~f~~~~ 265 (378) ++..++.|+++++++++|++|+++++++++++ + +.+++++++||++|||||++|++. + +-+|...|+..| T Consensus 221 -~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~~~ 299 (383) T protein:vir:10 221 -EKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLAN 299 (383) T ss_pred -HHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHHHHH Confidence 44456678999999999999999999999998 4 456899999999999999999742 1 223445566789 Q ss_pred HHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD 345 (378) Q Consensus 266 l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD 345 (378) |.|+++.||++|+++|+++ ++.|+.+.+++.|.+++++++.+++++|++|+||+|+++|++|+|+|| T Consensus 300 l~P~~~~ie~~l~~~l~~~-------------~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d 366 (383) T protein:vir:10 300 LNSYVNPIVDELRLKMNAP-------------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN 366 (383) T ss_pred HHHHHHHHHHHHHHhhCCc-------------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCc Confidence 9999999999999999753 366788899999999999999999999999999999999999999999 Q ss_pred eeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 346 VYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 346 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ......+..|+ ..++|| T Consensus 367 ~~~~~~~~~~~----------------~gGd~e 383 (383) T protein:vir:10 367 LPEFKPLTNET----------------KGGDDK 383 (383) T ss_pred ccccCCCcccC----------------CCCCCC Confidence 76544433322 122223 No 70 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=1.3e-65 Score=376.40 Aligned_cols=327 Identities=15% Similarity=0.155 Sum_probs=249.4 Q ss_pred CCcccccccccccccc------C-Cccceee------cccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLN------N-DTQRVTA------WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) Q Consensus 1 M~~f~~~~~~~~~~~~------~-~~~~~~~------~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~ 67 (378) ||||++.......... + ....+.. ..+...+++.++|++||++||++||++|+++|+. T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~--------- 71 (386) T protein:vir:48 1 MPIFNITNLATESPPISQGGFFDITDPDFLSTLNGSEWVSAESALRNSDLFSIINQLSNDLATVKLTASRK--------- 71 (386) T ss_pred CcccccccccccccccccccccccccchhcccccCCceechhhhhcchHHHHHHHHHHHhhccCceeeccc--------- Confidence 9999987553322111 1 0111111 1223344678999999999999999999998742 Q ss_pred ceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC-------------------- Q lcl|Aclame:pro 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD-------------------- 127 (378) Q Consensus 68 ~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~-------------------- 127 (378) ... .|+.+||++||+++||+.++.+++++||||++++ ++..|++..++|.. T Consensus 72 -------~~~-~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~ 142 (386) T protein:vir:48 72 -------QLQ-GIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRW-RNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNIT 142 (386) T ss_pred -------hhH-HHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEE-ECCCCcEEEEEEecCceeEEEEcCCCceEEEEEE Confidence 233 4556999999999999999999999999999987 67788998887631 Q ss_pred -------CeEEEeeeEEEEEcccc--CCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHH Q lcl|Aclame:pro 128 -------DKKEYKPEELVRLTSPF--YINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEY 187 (378) Q Consensus 128 -------~~~~~~~~dvih~r~~~--~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~ 187 (378) ..+.|+++||||+|++. +...|.|++..+..++.. +.+++.|+|+++.++.+++++.+++ T Consensus 143 ~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~~~~~e~~~~~ 222 (386) T protein:vir:48 143 FDDPRIPPKQHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKGGGLLDFKTKL 222 (386) T ss_pred ecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHH Confidence 12347789999999642 224588999888776543 3467899999999999999887776 Q ss_pred HHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc----chHHHHHHHH Q lcl|Aclame:pro 188 REKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ASQEQQIYFY 262 (378) Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~----~~e~~~~~f~ 262 (378) ++.|... ..++++++++++|++|++++++++++++ +.+++++++||++|||||.+|+.+ +++++.++|+ T Consensus 223 ~~~~~~~------~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~e~~~~~~~ 296 (386) T protein:vir:48 223 SRSRQAM------KQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQGDQQSSLEMSLDLY 296 (386) T ss_pred HHHHHHh------hcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHH Confidence 6665432 2567899999999999999999999995 567999999999999999999642 3578889999 Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC Q lcl|Aclame:pro 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE 342 (378) Q Consensus 263 ~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ 342 (378) +.||.|+++.||++|+++|++. +.++....++.|...++..+.+++++|++|+||+|+.+|++|++ T Consensus 297 ~~~l~P~~~~ie~~l~~~l~~~--------------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~~~ 362 (386) T protein:vir:48 297 NKAVSRYLRPFLSELSQKLSCD--------------VDADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYILQQAEIL 362 (386) T ss_pred HHHHHHHHHHHHHHHHHhhcch--------------hhcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCCCC Confidence 9999999999999999999864 33445566778888899999999999999999999999999998 Q ss_pred CCCeee-ecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 343 GGDVYI-ANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 343 gGD~~~-~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +||... ...|..|+ +.|+.+++| T Consensus 363 ~~~~~~~~~~~~~~~-------------~gGd~~~~~ 386 (386) T protein:vir:48 363 PKELPEGENPNKTTL-------------KGGEINGED 386 (386) T ss_pred CccchhhcCCCCCcc-------------CCCCCCCCC Confidence 887542 22233222 122222222 No 71 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=2.4e-65 Score=374.81 Aligned_cols=363 Identities=10% Similarity=0.050 Sum_probs=240.1 Q ss_pred CCcc----------------cccc-ccc-cccccCCccc--ee--------ecccchhhhhhHHHHHHHHHHHhhhccCc Q lcl|Aclame:pro 1 MNLF----------------GKVV-SFS-RGKLNNDTQR--VT--------AWQNEAVEYTSAFVTNIHNKIANEITKVE 52 (378) Q Consensus 1 M~~f----------------~~~~-~~~-~~~~~~~~~~--~~--------~~~~~~~~~~~~~v~~~i~~ia~~ia~~p 52 (378) |.+. +... .+. +....+.... +. ....-.......++++||.+|++.++++| T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~ 113 (535) T protein:vir:10 34 KAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLKAYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFK 113 (535) T ss_pred hhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcce Confidence 1111 1110 010 0000000000 00 00000112244568899999999999999 Q ss_pred eEEEEecccccccccceeccCchHHHHHhccCCCCCCHHH----HHHHHHHHHHhc-CCcEEEEEEeCCCceEEEEeecC Q lcl|Aclame:pro 53 FNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMD----FWRKVIKKLLSA-PYVDLYAVFDDNTGELLDLLFAD 127 (378) Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~----f~~~~~~~~ll~-Gna~~~~~~~~~~g~~~~~~~~~ 127 (378) +++++....+. .......|+++++|+.+||++|++++ |++.++.++++. |++|++++ ++..|+++++||.. T Consensus 114 i~l~~~~~~~~---~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~-r~~~G~~~~L~~l~ 189 (535) T protein:vir:10 114 VELKDATKVMS---KAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIF-KNDSNELDHFNAVD 189 (535) T ss_pred eEEEeccCCCc---chhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEE-ECCCCcEEEEEEeC Confidence 99987765433 22334679999999999999999876 556666676655 57898876 78889999988742 Q ss_pred --------------------------CeEEEeeeEEEEEcc-cc----CCccccchHHHHHHHHHH-----------HHh Q lcl|Aclame:pro 128 --------------------------DKKEYKPEELVRLTS-PF----YINEDTSILDNALASIQT-----------KLE 165 (378) Q Consensus 128 --------------------------~~~~~~~~dvih~r~-~~----~~~~~~~~~~~~~~~i~~-----------~~~ 165 (378) ..+.|+++||||||. +. ++..|+||+..+..++.. +.+ T Consensus 190 p~~V~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~n 269 (535) T protein:vir:10 190 ASKVVISYSPRSKDQPRKFEQFVSETKSVKFSERNLTFINYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFSQ 269 (535) T ss_pred CceeEEEEcCccccCceEEEEEecCceeEEECcccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 123578899999984 22 233488999988877643 346 Q ss_pred cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhcc-ccccceeEec-CCceeeecccchhhhhH-HHHHHHHHHHHHHh Q lcl|Aclame:pro 166 QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEG-SSYNGLTPVD-NKTEIVELKKDYSVLNK-DEIDLIKSELLTGY 242 (378) Q Consensus 166 ~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~f 242 (378) ++.|+|+|++++.+++...++.++++++.|++.++| .|+++++++. .|++|++++++++++++ +.+++++++||++| T Consensus 270 g~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~af 349 (535) T protein:vir:10 270 GGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIF 349 (535) T ss_pred cCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHh Confidence 788999999987644333334445555555555555 5788876654 79999999999999996 55799999999999 Q ss_pred CCCHHHhc----cc--------------chHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecch Q lcl|Aclame:pro 243 FMNENILL----GT--------------ASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) Q Consensus 243 gVPp~~l~----~~--------------~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~ 304 (378) ||||++|+ ++ +.|++...|++.||.||++.||++||++||+..+ .+++|+| + T Consensus 350 gVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~~--------~~~~f~f--~ 419 (535) T protein:vir:10 350 QMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDKIMRYVD--------TDYRFSF--T 419 (535) T ss_pred CCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC--------CeEEEEe--c Confidence 99999996 22 2366778899999999999999999999997532 1234444 5 Q ss_pred hhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecc---cceecccchhccCccC----------CCC- Q lcl|Aclame:pro 305 LFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANL---NAVAVKNLSDLQGSRK----------DVT- 370 (378) Q Consensus 305 ~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~---n~~~~~~~~~~~~~~~----------~~~- 370 (378) .+++.|.++++++++.++ .|+||+||+|+++||||+||||++++.. +++......+...... +.+ T Consensus 420 ~l~~~d~~~r~~~~~~~~-~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q 498 (535) T protein:vir:10 420 LGDAQDKLQEEQVWKLKL-ANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFINATGFGQPNVPDSSDDSGSTLGERERQ 498 (535) T ss_pred cccccCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCCCCCccccccccchhhcccccccccccCCCCCCCccccCCccccC Confidence 799999999999987665 5779999999999999999999876532 3322111000000000 000 Q ss_pred ---------CCCCCCCC Q lcl|Aclame:pro 371 ---------STDETNNQ 378 (378) Q Consensus 371 ---------~~~e~~~e 378 (378) +++.++.+ T Consensus 499 ~~~~~~~~~~~g~~~~~ 515 (535) T protein:vir:10 499 ERIQHSKDYEKGKDDPK 515 (535) T ss_pred cccccccccccCCCCCC Confidence 00000100 No 72 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=4.9e-65 Score=373.17 Aligned_cols=314 Identities=14% Similarity=0.141 Sum_probs=239.4 Q ss_pred CCcccccccccccccc---------CCccceee--------cccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLN---------NDTQRVTA--------WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~~~~~~~~~~~~---------~~~~~~~~--------~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) |+||+..++......+ .....+.. ..+...++++++|++||++||++||++|++++++.. T Consensus 3 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~ia~lp~~~~~~~~--- 79 (392) T protein:vir:74 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) T ss_pred chhhhhhhcccCcccccccccccccCchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhccCceeeccchh--- Confidence 9999865543221111 11111111 112334567899999999999999999999986431 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC---------------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~---------------- 127 (378) . .|+.+||++||+++||+.++.+++++||||++++ ++..|++.+++|.. T Consensus 80 -------------~-~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~ 144 (392) T protein:vir:74 80 -------------Q-GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNANGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) T ss_pred -------------h-hhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEE-ECCCCcEEEEEEEcCceeEEEEcCCCceEE Confidence 1 2446999999999999999999999999999987 67789998888731 Q ss_pred -----------CeEEEeeeEEEEEccc-cCC-ccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHH Q lcl|Aclame:pro 128 -----------DKKEYKPEELVRLTSP-FYI-NEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDN 183 (378) Q Consensus 128 -----------~~~~~~~~dvih~r~~-~~~-~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~ 183 (378) ..+.|+++||||||.+ .++ ..|.||+..+..++.. +.++++|+|++++++....++ T Consensus 145 y~~~~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~ 224 (392) T protein:vir:74 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSD 224 (392) T ss_pred EEEEecCCccceeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchH Confidence 1234778999999963 233 4589999988877643 456789999999987654432 Q ss_pred HHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc----cchHHHH Q lcl|Aclame:pro 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG----TASQEQQ 258 (378) Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~----~~~e~~~ 258 (378) +.+++|++.+. +..++++++++++|++|++++++++++++ +.+++++++||++|||||++|++ ++++++. T Consensus 225 --~~~~~~~~~~~---~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~e~~ 299 (392) T protein:vir:74 225 --KDKASRSRSFM---KRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI 299 (392) T ss_pred --HHHHHHHHHHh---ccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHH Confidence 44567776665 34678899999999999999999999995 56799999999999999999964 2345778 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHh-- Q lcl|Aclame:pro 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM-- 336 (378) Q Consensus 259 ~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~-- 336 (378) ++|+++||.|+++.||++|+++|++. +.|+...+++.|.+++++.+.+++++|++|+||+|+++ T Consensus 300 ~~~~~~~l~p~~~~ie~~l~~~l~~~--------------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~~ 365 (392) T protein:vir:74 300 SGMYASALNRYLRPAISELEYKLSDH--------------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQE 365 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch--------------hcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHHh Confidence 99999999999999999999999753 45667788999999999999999999999999999987 Q ss_pred ------------CCCCCCCCCeeeeccccee Q lcl|Aclame:pro 337 ------------GEQPIEGGDVYIANLNAVA 355 (378) Q Consensus 337 ------------gl~p~~gGD~~~~~~n~~~ 355 (378) |+||++|||. .+-+| T Consensus 366 ~g~~pne~r~~enl~~~~~Gd~----~~p~p 392 (392) T protein:vir:74 366 AGYIPKDLPAPENTNKKTTGQS----NEPVP 392 (392) T ss_pred CCCCccccchhcCCCCCCCCCC----CCCCC Confidence 4444444432 11111 No 73 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=1.1e-64 Score=371.28 Aligned_cols=325 Identities=14% Similarity=0.125 Sum_probs=239.0 Q ss_pred CCcccccccccccccc---------CCccceee--------cccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLN---------NDTQRVTA--------WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~~~~~~~~~~~~---------~~~~~~~~--------~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) |+||++..+....... +....+.. ..+...++.+++|++||++||++||++|++++++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) T protein:vir:10 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh--- Confidence 9999976543222111 11111110 112334567789999999999999999999986431 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC---------------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~---------------- 127 (378) +.|+.+||++||+++||+.++.+++++||||++++ ++..|+++.++|.. T Consensus 80 --------------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~ 144 (392) T protein:vir:10 80 --------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNANGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) T ss_pred --------------hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEE-ECCCCcEEEEEEEcCceeEEEEcCCCceEE Confidence 22456999999999999999999999999999987 67789999888732 Q ss_pred -----------CeEEEeeeEEEEEcccc-CC-ccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHH Q lcl|Aclame:pro 128 -----------DKKEYKPEELVRLTSPF-YI-NEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDN 183 (378) Q Consensus 128 -----------~~~~~~~~dvih~r~~~-~~-~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~ 183 (378) ..+.|+++||||+|.+. ++ ..|.||+..+..++.. +.+++.|+|+|++++....+ T Consensus 145 y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~- 223 (392) T protein:vir:10 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS- 223 (392) T ss_pred EEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch- Confidence 12357789999999632 22 4589999988876643 34678999999998765443 Q ss_pred HHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc----chHHHH Q lcl|Aclame:pro 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ASQEQQ 258 (378) Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~----~~e~~~ 258 (378) ++.+++|++.+. +..++++++++++|++|++++++++++++ +.+++++++||++|||||++|+++ .++++. T Consensus 224 -~~~~~~~~~~~~---~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~ 299 (392) T protein:vir:10 224 -DKDKASRSRSFM---KRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI 299 (392) T ss_pred -HHHHHHHHHHHh---ccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHH Confidence 244566776655 34678899999999999999999999995 567999999999999999999752 345778 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHh-- Q lcl|Aclame:pro 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM-- 336 (378) Q Consensus 259 ~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~-- 336 (378) ++|+++||.|+++.||++|+++|++. +.||...+.+.|.+++++.+.+++++|++|+||+|+++ T Consensus 300 ~~f~~~~l~P~~~~ie~~l~~~L~~~--------------~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~ 365 (392) T protein:vir:10 300 SGMYASALNRYLRPAISELEYKLSDH--------------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQE 365 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc--------------ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHh Confidence 99999999999999999999999753 44666778899999999999999999999999999987 Q ss_pred -CCCCCCCCCeeeecccceecccchhccCccCCCCCC Q lcl|Aclame:pro 337 -GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST 372 (378) Q Consensus 337 -gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 372 (378) |+.|. ++...-|+-|+ ++|+.++... T Consensus 366 ~g~~p~----e~r~~e~l~~~------~~Gd~~~p~p 392 (392) T protein:vir:10 366 AGYIPK----DLPAPENTNKK------TTGQSNEPVP 392 (392) T ss_pred cCCCcc----ccchhcCCCCC------CCCCCCCCCC Confidence 44331 11111122111 1111111100 No 74 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=1.1e-64 Score=371.28 Aligned_cols=325 Identities=14% Similarity=0.125 Sum_probs=239.0 Q ss_pred CCcccccccccccccc---------CCccceee--------cccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLN---------NDTQRVTA--------WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~~~~~~~~~~~~---------~~~~~~~~--------~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) |+||++..+....... +....+.. ..+...++.+++|++||++||++||++|++++++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) T protein:vir:39 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh--- Confidence 9999976543222111 11111110 112334567789999999999999999999986431 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC---------------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------- 127 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~---------------- 127 (378) +.|+.+||++||+++||+.++.+++++||||++++ ++..|+++.++|.. T Consensus 80 --------------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~ 144 (392) T protein:vir:39 80 --------------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRW-RNANGADMKWEYLRPSQVNTYYFEYENGMY 144 (392) T ss_pred --------------hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEE-ECCCCcEEEEEEEcCceeEEEEcCCCceEE Confidence 22456999999999999999999999999999987 67789999888732 Q ss_pred -----------CeEEEeeeEEEEEcccc-CC-ccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHH Q lcl|Aclame:pro 128 -----------DKKEYKPEELVRLTSPF-YI-NEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDN 183 (378) Q Consensus 128 -----------~~~~~~~~dvih~r~~~-~~-~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~ 183 (378) ..+.|+++||||+|.+. ++ ..|.||+..+..++.. +.+++.|+|+|++++....+ T Consensus 145 y~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~- 223 (392) T protein:vir:39 145 YNITFDDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLS- 223 (392) T ss_pred EEEEecCcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCch- Confidence 12357789999999632 22 4589999988876643 34678999999998765443 Q ss_pred HHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc----chHHHH Q lcl|Aclame:pro 184 TQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ASQEQQ 258 (378) Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~----~~e~~~ 258 (378) ++.+++|++.+. +..++++++++++|++|++++++++++++ +.+++++++||++|||||++|+++ .++++. T Consensus 224 -~~~~~~~~~~~~---~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~ 299 (392) T protein:vir:39 224 -DKDKASRSRSFM---KRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQI 299 (392) T ss_pred -HHHHHHHHHHHh---ccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHH Confidence 244566776655 34678899999999999999999999995 567999999999999999999752 345778 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHh-- Q lcl|Aclame:pro 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM-- 336 (378) Q Consensus 259 ~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~-- 336 (378) ++|+++||.|+++.||++|+++|++. +.||...+.+.|.+++++.+.+++++|++|+||+|+++ T Consensus 300 ~~f~~~~l~P~~~~ie~~l~~~L~~~--------------~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~ 365 (392) T protein:vir:39 300 SGMYASALNRYLRPAISELEYKLSDH--------------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQE 365 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc--------------ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHh Confidence 99999999999999999999999753 44666778899999999999999999999999999987 Q ss_pred -CCCCCCCCCeeeecccceecccchhccCccCCCCCC Q lcl|Aclame:pro 337 -GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST 372 (378) Q Consensus 337 -gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~ 372 (378) |+.|. ++...-|+-|+ ++|+.++... T Consensus 366 ~g~~p~----e~r~~e~l~~~------~~Gd~~~p~p 392 (392) T protein:vir:39 366 AGYIPK----DLPAPENTNKK------TTGQSNEPVP 392 (392) T ss_pred cCCCcc----ccchhcCCCCC------CCCCCCCCCC Confidence 44331 11111122111 1111111100 No 75 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=1e-63 Score=365.88 Aligned_cols=301 Identities=14% Similarity=0.154 Sum_probs=220.7 Q ss_pred CCccccccccccccccCCccc--------eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQR--------VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMA 72 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~ 72 (378) |+||++..+.+.....+.... .....+...++.+++||+||++||++||++|+. T Consensus 1 M~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~p~~------------------ 62 (359) T protein:vir:10 1 MSILNPFERRSSITPNNYYPFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSDIAGTRFI------------------ 62 (359) T ss_pred CcccchhhccccCCCCcchhhhhccccccCCcccCHHHhhcchHHHHHHHHHHHhhhcCccc------------------ Confidence 999986544322211111100 011123344577899999999999999999972 Q ss_pred CchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC-----------------------Ce Q lcl|Aclame:pro 73 GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD-----------------------DK 129 (378) Q Consensus 73 ~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~-----------------------~~ 129 (378) +|+++++|+.+|||+||+++||+.++.+++++||||++++ ++..|++..+||.. .. T Consensus 63 ~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~~g~~~~l~~l~~~~v~i~~~~~~~~y~~~~~~~~~~ 141 (359) T protein:vir:10 63 GNQVFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAIL-KGDNSLMKELRLIPSNAITIDLTDDTLTYEVNQFDDYPS 141 (359) T ss_pred cchHHHHHhhcccccCCHHHHHHHHHHhccccCceEEEEE-ECCCCeEEEEEEeCCceEEEEEcCCeEEEEEEecCCceE Confidence 4666777778999999999999999999999999999987 67889988887631 23 Q ss_pred EEEeeeEEEEEccc------cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCC-cCCHHHHHHHHHHH Q lcl|Aclame:pro 130 KEYKPEELVRLTSP------FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINA-FLDIDNTQEYREKA 191 (378) Q Consensus 130 ~~~~~~dvih~r~~------~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~-~l~~~~~~~~~~~~ 191 (378) +.|+++||||||.+ .++..|.||+..+.+++.. +.++++|+|++++++ .+++++.++++++| T Consensus 142 ~~~~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~ 221 (359) T protein:vir:10 142 AKYNASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKEF 221 (359) T ss_pred EEEcccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHH Confidence 46788999999853 2445688999988877643 346778999999975 68887766666666 Q ss_pred HHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcccc----h----HHHHHHHH Q lcl|Aclame:pro 192 LTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGTA----S----QEQQIYFY 262 (378) Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~~----~----e~~~~~f~ 262 (378) ++ ..++.|+|++++|++|++|+++++++.++++ +.+++++++||++|||||++|+++. + ++++..|+ T Consensus 222 ~~----~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l 297 (359) T protein:vir:10 222 EK----ANGGNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVNAL 297 (359) T ss_pred HH----HhCccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHHHH Confidence 43 4466889999999999999999999999995 6679999999999999999997532 2 23334455 Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC Q lcl|Aclame:pro 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE 342 (378) Q Consensus 263 ~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ 342 (378) ..+|.|++..|+..|++++. ++...+.+.|...+...+.+++++|++|+||+|+++|++|+= T Consensus 298 ~~~l~p~~~~l~~~l~~~~~------------------~~~~~~~~~d~~~~~~~~~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 298 NRFIEPLISELRIKCDSSIG------------------VDMSPITDYSNSVFKADILNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHHHHHHHHHHHHhhhhhc------------------ccchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 55555555555444444332 222333444445555667789999999999999999999985 No 76 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=1.6e-63 Score=364.80 Aligned_cols=361 Identities=12% Similarity=0.098 Sum_probs=242.3 Q ss_pred CCcccc--------------ccccccccc--cC--C--ccc--eeeccc-ch---hhhhhHHHHHHHHHHHhhhccCc-- Q lcl|Aclame:pro 1 MNLFGK--------------VVSFSRGKL--NN--D--TQR--VTAWQN-EA---VEYTSAFVTNIHNKIANEITKVE-- 52 (378) Q Consensus 1 M~~f~~--------------~~~~~~~~~--~~--~--~~~--~~~~~~-~~---~~~~~~~v~~~i~~ia~~ia~~p-- 52 (378) -.++.+ .+++++-.. .. . ... .....+ .. .+..+++|++||++||++||+++ T Consensus 31 ~~~~~~~~~~~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~npiv~~~I~~ia~~IA~~~~~ 110 (551) T protein:vir:80 31 YSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKP 110 (551) T ss_pred eeeecccccHHHHHHhhccCcceeecccccceecCcccccCccccChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhh Confidence 111111 111111000 00 0 000 000000 11 22357999999999999999854 Q ss_pred ---------eEEEEecccccccccceeccCchHHHHHhccCCCCC-----CHHHHHHHHHHHHHhcCCcEEEEEEeCCCc Q lcl|Aclame:pro 53 ---------FNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGER-----NSMDFWRKVIKKLLSAPYVDLYAVFDDNTG 118 (378) Q Consensus 53 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~-----s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g 118 (378) |.+--+. .+..........-+.+.++|+ +||+++ |+.+|++.++.+++++||||++++ ++..| T Consensus 111 ~~~~~~g~~~~i~~kd-~~~~~~~~~~~~~~~i~~~l~-~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~-rd~~G 187 (551) T protein:vir:80 111 ARHSEKGVGFEVRLKD-LDKKPTSHDEATIKRIESFIE-KTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKV-FNRNQ 187 (551) T ss_pred hhhhcCCCCceEEecc-cCcccChhHHHHHHHHHHHHH-hcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEE-ECCCC Confidence 3321111 111111111223356777786 799874 888999999999999999999987 67789 Q ss_pred eEEEEeecCC----------------------------eEEEeeeEEEEEcc-cc----CCccccchHHHHHHHHHH--- Q lcl|Aclame:pro 119 ELLDLLFADD----------------------------KKEYKPEELVRLTS-PF----YINEDTSILDNALASIQT--- 162 (378) Q Consensus 119 ~~~~~~~~~~----------------------------~~~~~~~dvih~r~-~~----~~~~~~~~~~~~~~~i~~--- 162 (378) ++.++||... .+.|+++||||+|. +. .+..|+||+..++.++.. T Consensus 188 ~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~eiiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a 267 (551) T protein:vir:80 188 SMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHEN 267 (551) T ss_pred cEEEEEEeCCceeEEEECCccccccCceEEEEEeCCcEEEEEcccceEEecccCCCCcccccccccHHHHHHHHHHHHHH Confidence 9998887421 23578899999983 32 233488999988877642 Q ss_pred --------HHhcCCcceeeeeCCc--CCHHHHHHHHHHHHHHHHHhhccccccceeEe-cCCceeeecccchhhhhH-HH Q lcl|Aclame:pro 163 --------KLEQGKLRGLLKINAF--LDIDNTQEYREKALTTIKNMQEGSSYNGLTPV-DNKTEIVELKKDYSVLNK-DE 230 (378) Q Consensus 163 --------~~~~~~~~gil~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~~~~l~~~~~~~~~-~~ 230 (378) +.|+++|+|+|.+++. +++++.+++++.|++.++ +..|+|+++++ ++|++|+++++++.++++ +. T Consensus 268 ~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~---G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~ 344 (551) T protein:vir:80 268 TEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLS---GINGSWQIPVVSAEDVKFVNMTPSARDMEFEKW 344 (551) T ss_pred HHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhc---CccccCccccccCCCceEEEccCChhHHHHHHH Confidence 3467789999988644 788877777777776553 23678887555 689999999999999996 56 Q ss_pred HHHHHHHHHHHhCCCHHHhcc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcccc Q lcl|Aclame:pro 231 IDLIKSELLTGYFMNENILLG----------------TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) Q Consensus 231 ~~~~~~~Ia~~fgVPp~~l~~----------------~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~ 294 (378) +++++++||++|||||++|+- .+.+++..+|++.||.||+++||++||++|++..+ T Consensus 345 ~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~-------- 416 (551) T protein:vir:80 345 LNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFG-------- 416 (551) T ss_pred HHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC-------- Confidence 799999999999999999961 22467788999999999999999999999987521 Q ss_pred ceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCC-CCCCCeeeecccceecccchhccCcc------- Q lcl|Aclame:pro 295 YYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQP-IEGGDVYIANLNAVAVKNLSDLQGSR------- 366 (378) Q Consensus 295 ~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p-~~gGD~~~~~~n~~~~~~~~~~~~~~------- 366 (378) ..++|+|+ .+++.+..++++++. ++..||||+||+|+++|||| +||||+++.|.|+.+++...+.+..+ T Consensus 417 ~~~~f~f~--~~~~~~~~~~~~~~~-~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (551) T protein:vir:80 417 DKYTFQFV--GGDIKSELESVKILA-EKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSN 493 (551) T ss_pred CceEEEee--ccChhhHHHHHHHHH-HHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCcchhhhhhc Confidence 12344554 567778888888664 66789999999999999998 79999999999988765432211100 Q ss_pred -----------CCCCCCCCCCC-----------C Q lcl|Aclame:pro 367 -----------KDVTSTDETNN-----------Q 378 (378) Q Consensus 367 -----------~~~~~~~e~~~-----------e 378 (378) .+.++..+.++ . T Consensus 494 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 527 (551) T protein:vir:80 494 LQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQ 527 (551) T ss_pred cccccCcCCCCCCCCCCCCCCccccCCCcccccc Confidence 00000000000 0 No 77 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=1e-62 Score=360.48 Aligned_cols=342 Identities=10% Similarity=0.006 Sum_probs=249.2 Q ss_pred cchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCC--------CHHHHHHHHH Q lcl|Aclame:pro 27 NEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGER--------NSMDFWRKVI 98 (378) Q Consensus 27 ~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~--------s~~~f~~~~~ 98 (378) =..+...+++|++||++||++||++|++++.+...... +...+..++....+++.+||+.| |+.+||+.++ T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~ 79 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDP-DRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAW 79 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccc-cchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHH Confidence 12344568999999999999999999999876543221 22223445556667888899866 5668999999 Q ss_pred HHHHhcCCcEEEEEEeCCCceEEEEeecC--------------------------------------------------- Q lcl|Aclame:pro 99 KKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------------------------------------------- 127 (378) Q Consensus 99 ~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------------------------------------------- 127 (378) .+++++||||++++ ++..|+++.++|.. T Consensus 80 ~~l~l~Gn~~i~~~-r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (467) T protein:vir:31 80 TDYEAIGWLTIEIL-TQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGST 158 (467) T ss_pred HHHHhcCCeEEEEE-ECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccc Confidence 99999999999987 67889998887642 Q ss_pred -CeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeC-CcCCHHHHHHHHHHHH Q lcl|Aclame:pro 128 -DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKIN-AFLDIDNTQEYREKAL 192 (378) Q Consensus 128 -~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~-~~l~~~~~~~~~~~~~ 192 (378) ..+.++++||||+|.+ .+...|++++..++.++.. +.|++.|+|+|.++ +.+++++.+++++.|+ T Consensus 159 ~~~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~ 238 (467) T protein:vir:31 159 GTSVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIE 238 (467) T ss_pred cceeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHH Confidence 1234678999999964 4556789999888876632 34678899999875 5789999999999988 Q ss_pred HHHHHhh--------ccccccceeEecCCceeeecc--------cchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc---- Q lcl|Aclame:pro 193 TTIKNMQ--------EGSSYNGLTPVDNKTEIVELK--------KDYSVLNK-DEIDLIKSELLTGYFMNENILLG---- 251 (378) Q Consensus 193 ~~~~~~~--------~~~~~~~~~~l~~g~~~~~l~--------~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~---- 251 (378) +.+++.. +..++++++++..|+++++++ ++++++++ +.+++.+++||++|||||.+|+. T Consensus 239 ~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~ 318 (467) T protein:vir:31 239 DNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESG 318 (467) T ss_pred hhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCC Confidence 7765432 346778889998877665553 25678885 55688999999999999999961 Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 252 ---TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFT 328 (378) Q Consensus 252 ---~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t 328 (378) +..+++..+|++.||.|+++.||++||++|++..+...+ + .++|+.+.+++.|.+++++++..++++|++| T Consensus 319 ~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~----~--~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T 392 (467) T protein:vir:31 319 AFSTDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPD----W--TIEFELAKPDTKLQDVEIASQRVQAMQGLLT 392 (467) T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCC----c--eEEEecchhhccCHHHHHHHHHHHHhCCCcC Confidence 335788899999999999999999999999987654333 2 3566778899999999999999999999999 Q ss_pred HHHHHHHhCCCCCCCCCeeeecccceecccchh-ccCccCCCC----CCCCCCCC Q lcl|Aclame:pro 329 QNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSD-LQGSRKDVT----STDETNNQ 378 (378) Q Consensus 329 ~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~-~~~~~~~~~----~~~e~~~e 378 (378) +||+|+++||||+++++ +.|.+.......++ ..++..+.+ +.++.++. T Consensus 393 ~NE~R~~~Gl~pi~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (467) T protein:vir:31 393 VNELRDEFGFEPFPEEH--VYGGETLVAEVTGGSGPGGGIGDQIEQLVEDRADEI 445 (467) T ss_pred HHHHHHHhCCCCCCccc--ccCCcccccccccccCCCCcccCcCCCCCCCcccch Confidence 99999999999996544 33332221110000 000011111 11111111 No 78 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=2.6e-63 Score=363.71 Aligned_cols=320 Identities=12% Similarity=0.088 Sum_probs=242.4 Q ss_pred CCcccccccccccc------cc-CCccce-eec-----ccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK------LN-NDTQRV-TAW-----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) Q Consensus 1 M~~f~~~~~~~~~~------~~-~~~~~~-~~~-----~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~ 67 (378) ||||++...-.... +. .....+ ..| .+...++.+++|++||++||++||++||+++++.. T Consensus 1 Mglf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~i~~Ia~~ia~l~~~~~~~~~------- 73 (384) T protein:vir:49 1 MPIFNITNLATESPPSNQDSFFDITDPEFLDALNGSEWVSAETALKNSDLFSIISQLSNDLATAKITTSRKQL------- 73 (384) T ss_pred CccccccccCcccccccchhhccccchhhcccccCCceechhhhhccHHHHHHHHHHHHHHhhCceeeecchh------- Confidence 99998753221111 11 111111 111 22334567899999999999999999999986431 Q ss_pred ceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC-------------------- Q lcl|Aclame:pro 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD-------------------- 127 (378) Q Consensus 68 ~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~-------------------- 127 (378) +.|+.+|||+||+++||+.++.+++++||||++++ ++..|++.+++|.. T Consensus 74 ----------~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~-r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~ 142 (384) T protein:vir:49 74 ----------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRW-RNENGRDMKWEYLRPSQVSFNRLDNQNGLYYNIT 142 (384) T ss_pred ----------hhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEE-ECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEE Confidence 12557999999999999999999999999999987 67788988888631 Q ss_pred -------CeEEEeeeEEEEEccccC--CccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHH Q lcl|Aclame:pro 128 -------DKKEYKPEELVRLTSPFY--INEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEY 187 (378) Q Consensus 128 -------~~~~~~~~dvih~r~~~~--~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~ 187 (378) ..+.|+++||||+|.+.. ...|.||+..+..++.. +.++++|+|++++++.+++++.. T Consensus 143 ~~~~~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~-- 220 (384) T protein:vir:49 143 FDDPRIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFKT-- 220 (384) T ss_pred ecCccccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHH-- Confidence 124578899999996432 24588999888776642 45678999999999988776533 Q ss_pred HHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc----c----hHHHH Q lcl|Aclame:pro 188 REKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----A----SQEQQ 258 (378) Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~----~----~e~~~ 258 (378) +++++.+ .+..++++++++++|++|++++++++++++ +.+++++++||++|||||++|+++ + .++++ T Consensus 221 -~~~~~~~---~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~ 296 (384) T protein:vir:49 221 -KQSRSRQ---AMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIY 296 (384) T ss_pred -HHHHHHH---hcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHH Confidence 2333332 345788999999999999999999999995 667999999999999999999752 1 24566 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCC Q lcl|Aclame:pro 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGE 338 (378) Q Consensus 259 ~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl 338 (378) ..|++.+|.|++..|+++|+++|.......... .. ..+.|+.+.++++|.+++.+++.++...|+++ ||+|+.+|+ T Consensus 297 ~~~i~~~l~pi~~~i~~~l~~~l~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~-ne~r~~~~~ 372 (384) T protein:vir:49 297 FKAVSRFLRPFVSELSKKLSCEVDADILPAVDP-TG--SNYIGLINSMVKTGTLAQNQGLYVLQQAEILP-KDLPEGETD 372 (384) T ss_pred HHHHHHHHHHHHHHHHHHhchhhhhhhhhhhhc-cc--hHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC-hhHHHHcCC Confidence 789999999999999999999884322111111 11 23566778899999999999999999999987 999999999 Q ss_pred CCCCCCC--eee Q lcl|Aclame:pro 339 QPIEGGD--VYI 348 (378) Q Consensus 339 ~p~~gGD--~~~ 348 (378) +|+|||| ..| T Consensus 373 ~p~~gGd~~~~~ 384 (384) T protein:vir:49 373 STLKGGETNEQY 384 (384) T ss_pred CCCCCCCCCCCC Confidence 9999986 344 No 79 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=2e-62 Score=358.80 Aligned_cols=360 Identities=13% Similarity=0.077 Sum_probs=238.9 Q ss_pred CCcccccc---ccccccccCCccceeecccc----hhhhhhHHHHHHHHHHHhhhccC-----------ceEEEEecccc Q lcl|Aclame:pro 1 MNLFGKVV---SFSRGKLNNDTQRVTAWQNE----AVEYTSAFVTNIHNKIANEITKV-----------EFNHVKYKKSD 62 (378) Q Consensus 1 M~~f~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~i~~ia~~ia~~-----------p~~~~~~~~~~ 62 (378) |.+-.... .-.+++...+. ....+.+. .....+++|++||++||++||++ +|.+..+.... T Consensus 54 ~a~~~p~~~~~~~~~~~~~~p~-~~~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~ 132 (576) T protein:vir:96 54 QAYAEPFLEVMDTNPEFRTKRS-YMKNSDNLHDVLKQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDA 132 (576) T ss_pred chhhcceeeeeecCCCccccCc-chhhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcC Confidence 21111110 01111111111 01111110 11225789999999999999973 23332222221 Q ss_pred cccccc---eeccCchHHHHHhccCCCC-CCHHHHHHHHHHHHHhcCCcEEEEEE-eCCCceEEEEeecCC--------- Q lcl|Aclame:pro 63 VGSDTL---ISMAGSDLDEVLNWSPKGE-RNSMDFWRKVIKKLLSAPYVDLYAVF-DDNTGELLDLLFADD--------- 128 (378) Q Consensus 63 ~~~~~~---~~~~~~~l~~lL~~~PN~~-~s~~~f~~~~~~~~ll~Gna~~~~~~-~~~~g~~~~~~~~~~--------- 128 (378) ...+.. .....|.|..++ ..|||+ +|+.+||+.++.+++++||||+++++ ++..|+++++||... T Consensus 133 ~~~~~~~~~~~~l~~~l~~~~-~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~ 211 (576) T protein:vir:96 133 EPGKKEKEEIKRIENFILNTG-RDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNATTMDKFIAVDPSTIFYATDK 211 (576) T ss_pred ccchhhhHhhhhHHhhHhhcc-CCCCCccccHHHHHHHHHHHHHhcCCeEEEEEEecCCCCceEEEEEeCCceeEEEECC Confidence 111111 111233444444 357776 58999999999999999999999875 456788998887421 Q ss_pred -------------------eEEEeeeEEEEEc-cccC----CccccchHHHHHHHHHH-----------HHhcCCcceee Q lcl|Aclame:pro 129 -------------------KKEYKPEELVRLT-SPFY----INEDTSILDNALASIQT-----------KLEQGKLRGLL 173 (378) Q Consensus 129 -------------------~~~~~~~dvih~r-~~~~----~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil 173 (378) ...|+++||||++ ++.. +..|+||+..+..++.. +.+++.|+|+| T Consensus 212 dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~Ng~~p~giL 291 (576) T protein:vir:96 212 NGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGYGLSEVEIAMKQFIAYNNTETFNDRFFSHGGTTRGIL 291 (576) T ss_pred CCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE Confidence 1245678988765 4432 34588999988877643 34678999999 Q ss_pred eeCC--cCCHHHHHHHHHHHHHHHHHhhccccccc-eeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHh Q lcl|Aclame:pro 174 KINA--FLDIDNTQEYREKALTTIKNMQEGSSYNG-LTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENIL 249 (378) Q Consensus 174 ~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l 249 (378) ++++ .+++++.+++++.|++.++ +..++++ ++++++|++|++++++++++++ +.+++++++||++|||||++| T Consensus 292 ~~~~~~~ls~e~~~~lr~~~~~~~~---G~~nag~~p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~l 368 (576) T protein:vir:96 292 QIKSEQQQSQRALENFKREWKSSFS---GINGSWQVPVVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEI 368 (576) T ss_pred EeCCCCCCCHHHHHHHHHHHHHHhc---cccccccceeecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHc Confidence 9875 4688877777777766554 2257777 5889999999999999999995 667999999999999999999 Q ss_pred cc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHH Q lcl|Aclame:pro 250 LG-----------------TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLK 312 (378) Q Consensus 250 ~~-----------------~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~ 312 (378) +- .+.|++.++|++.||.||++.||++||++|++.. +. .+.+. +++.|.+ T Consensus 369 G~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~------~~--~~~~~-----f~r~d~~ 435 (576) T protein:vir:96 369 GFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEY------SD--KYVFQ-----FVGGDTK 435 (576) T ss_pred cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc------cC--ceEEE-----eccCCHH Confidence 62 2347888999999999999999999999998642 11 12233 3577888 Q ss_pred HHHHHHHHH--HhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccC---------------------CC Q lcl|Aclame:pro 313 ELIDLYHEN--INGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRK---------------------DV 369 (378) Q Consensus 313 ~~~~~~~~~--~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~---------------------~~ 369 (378) ++++.+..+ +.+||||+||+|+++||||+||||++++|.|+.+++......+... +. T Consensus 436 ~~~e~~~~~~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 515 (576) T protein:vir:96 436 SELDKIKILQEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQ 515 (576) T ss_pred HHHHHHHHHHHHhcCccCHHHHHHHhCCCCCCCcceeccccccccccccccCCCCCCccccccccccccccCCCCCCCCC Confidence 888877654 5679999999999999999999999999999987764322111110 00 Q ss_pred CCCCCCCCC Q lcl|Aclame:pro 370 TSTDETNNQ 378 (378) Q Consensus 370 ~~~~e~~~e 378 (378) +.+.+++++ T Consensus 516 ~~s~~~~~~ 524 (576) T protein:vir:96 516 QESTEDKVD 524 (576) T ss_pred CCCCCCccc Confidence 011111111 No 80 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=2.2e-62 Score=358.56 Aligned_cols=327 Identities=15% Similarity=0.147 Sum_probs=245.6 Q ss_pred CCccccccccccccccCC-------ccc-ee-----ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNND-------TQR-VT-----AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~-------~~~-~~-----~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~ 67 (378) ||||++.+.......... ... .. ...+...++++++|++||++||++||++|++++++. T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~~~~~~-------- 72 (386) T protein:vir:49 1 MPIFNITNLATESPPINQESFFDIADSDFLASLNSSEWVSAENALKNSDLFSIISQLSNDLATAKITTSRKQ-------- 72 (386) T ss_pred CchhhhhccCCCCcccchhhhhhhhhccccccccCCceechhhhhccHHHHHHHHHHHHHhhhCceeeccch-------- Confidence 999998754322111100 000 00 112333456789999999999999999999998643 Q ss_pred ceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC-------------------- Q lcl|Aclame:pro 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD-------------------- 127 (378) Q Consensus 68 ~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~-------------------- 127 (378) .+.|+.+||++||+++||+.++.+++++||||++++ ++..|+++.++|.. T Consensus 73 ---------~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~-r~~~g~~~~l~~i~~~~v~v~~~~~~~~~~y~~~ 142 (386) T protein:vir:49 73 ---------LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRW-RNDNGRDMKWEYLRPSQVSFNRLDNQNGLYYNIT 142 (386) T ss_pred ---------hhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEE-ECCCCcEEEEEEecCceeEEEEcCCCceEEEEEE Confidence 123556999999999999999999999999999987 67788888887631 Q ss_pred -------CeEEEeeeEEEEEcccc--CCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHH Q lcl|Aclame:pro 128 -------DKKEYKPEELVRLTSPF--YINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEY 187 (378) Q Consensus 128 -------~~~~~~~~dvih~r~~~--~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~ 187 (378) ..+.|+++||||||.+. +...|.|++..+..++.. +.+++.|+|+|++++.+++++..++ T Consensus 143 ~~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~ 222 (386) T protein:vir:49 143 FDDPHIAPKQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGGLLDFKTKV 222 (386) T ss_pred EcCccccceeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCChHHHHHH Confidence 13457889999999643 234688999888876643 4467899999999999998877666 Q ss_pred HHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhccc----chHHHHHHHH Q lcl|Aclame:pro 188 REKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGT----ASQEQQIYFY 262 (378) Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~----~~e~~~~~f~ 262 (378) ++.|.. ...++|+++++++|++|++++.+++++++ +.+++++++||++|||||++|+++ ++.++..+|+ T Consensus 223 ~~~~~~------~~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~ 296 (386) T protein:vir:49 223 SRSRQA------MKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGDQQSSLEMIYNIY 296 (386) T ss_pred HHHHHH------hccCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccchHHHHHHHH Confidence 665543 23678899999999999999999999996 557999999999999999999753 2345668899 Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC Q lcl|Aclame:pro 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE 342 (378) Q Consensus 263 ~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ 342 (378) ..+|.|+++.|+++|+++|++. +.|+...+++.|.++++..+.+++++|++|+||+|++++..++. T Consensus 297 ~~~i~~~l~~i~~~~~~~l~~~--------------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~ 362 (386) T protein:vir:49 297 FKSVSRYLRPFVSEMSKKLSCE--------------VDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEIL 362 (386) T ss_pred HHHHHHHHHHHHHHHHHHhcch--------------hcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCC Confidence 9999999999999999999642 56677889999999999999999999999999999999876653 Q ss_pred CCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 343 GGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 343 gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .++... ..+. .....+++|+|+| T Consensus 363 ~~~~~~-~~~~------------~~~~~~gGd~~~~ 385 (386) T protein:vir:49 363 PKELPD-GKNP------------NRTSLKGGEINEQ 385 (386) T ss_pred CCcCcc-hhcc------------CCCCCCCCCCCCC Confidence 333211 0000 0111122222333 No 81 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=4.9e-62 Score=356.72 Aligned_cols=359 Identities=13% Similarity=0.121 Sum_probs=244.8 Q ss_pred CCcccccccccc-ccc------cCCccceeec-------cc---ch-hhhhhHHHHHHHHHHHhhhcc------------ Q lcl|Aclame:pro 1 MNLFGKVVSFSR-GKL------NNDTQRVTAW-------QN---EA-VEYTSAFVTNIHNKIANEITK------------ 50 (378) Q Consensus 1 M~~f~~~~~~~~-~~~------~~~~~~~~~~-------~~---~~-~~~~~~~v~~~i~~ia~~ia~------------ 50 (378) ++++.|-...+. .+. .+...++... .+ -. ..-.+++|++||+++|+.||. T Consensus 43 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~ 122 (563) T protein:vir:99 43 YQDLTKSLYGQQQAYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGL 122 (563) T ss_pred HHHHHhhhccCCCcchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccc Confidence 444444221111 100 0100111100 00 00 111468889999999988885 Q ss_pred -CceEEEEecccccccccceeccCchHHHHHh-c--cCCCC-CCHHHHHHHHHHHHHhcCCcEEEEEE-eCCCceEEEEe Q lcl|Aclame:pro 51 -VEFNHVKYKKSDVGSDTLISMAGSDLDEVLN-W--SPKGE-RNSMDFWRKVIKKLLSAPYVDLYAVF-DDNTGELLDLL 124 (378) Q Consensus 51 -~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~-~--~PN~~-~s~~~f~~~~~~~~ll~Gna~~~~~~-~~~~g~~~~~~ 124 (378) +|+++++++..+. .......|++..+|. . .|||+ +|+++||+.++.+++++||+|+++++ ++..|+++++| T Consensus 123 ~~~i~l~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~ 199 (563) T protein:vir:99 123 GFEVRLRDLDAEPG---RKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFI 199 (563) T ss_pred cceeEEeecCCCcc---hhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEE Confidence 6777776654432 122234577766553 2 23443 58999999999999999999998754 67789999998 Q ss_pred ecCC----------------------------eEEEeeeEEEEE-ccccC----CccccchHHHHHHHHHH--------- Q lcl|Aclame:pro 125 FADD----------------------------KKEYKPEELVRL-TSPFY----INEDTSILDNALASIQT--------- 162 (378) Q Consensus 125 ~~~~----------------------------~~~~~~~dvih~-r~~~~----~~~~~~~~~~~~~~i~~--------- 162 (378) |... ...|+++||||+ +++.. +..|+||+..++.++.. T Consensus 200 pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~ 279 (563) T protein:vir:99 200 AVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFND 279 (563) T ss_pred EeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHH Confidence 7421 124567787755 55432 34588999988877643 Q ss_pred --HHhcCCcceeeeeCC--cCCHHHHHHHHHHHHHHHHHhhccccccce-eEecCCceeeecccchhhhhH-HHHHHHHH Q lcl|Aclame:pro 163 --KLEQGKLRGLLKINA--FLDIDNTQEYREKALTTIKNMQEGSSYNGL-TPVDNKTEIVELKKDYSVLNK-DEIDLIKS 236 (378) Q Consensus 163 --~~~~~~~~gil~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~ 236 (378) +.+++.|+|+|++++ .+++++.+++++.|++.+++ ..++|++ +++++|++|++++++++++++ +.++++++ T Consensus 280 ~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G---~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~ 356 (563) T protein:vir:99 280 RFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSG---INGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLIN 356 (563) T ss_pred HHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhcc---ccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHH Confidence 346789999999875 46888777777777665532 2577775 789999999999999999995 56799999 Q ss_pred HHHHHhCCCHHHhcc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeE Q lcl|Aclame:pro 237 ELLTGYFMNENILLG-----------------TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERI 299 (378) Q Consensus 237 ~Ia~~fgVPp~~l~~-----------------~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~ 299 (378) +||++|||||++|+- .+.+++.++|++.||.||++.||++||++|++..+ . ++ T Consensus 357 ~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~------~----~~ 426 (563) T protein:vir:99 357 IISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG------D----KY 426 (563) T ss_pred HHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc------c----cc Confidence 999999999999961 12467788999999999999999999999997521 1 12 Q ss_pred EecchhhhhcCHHHHHHHHHH--HHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCc------------ Q lcl|Aclame:pro 300 IVDNQLFKFATLKELIDLYHE--NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGS------------ 365 (378) Q Consensus 300 ~~d~~~l~~~d~~~~~~~~~~--~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~------------ 365 (378) .|+ +++.|.+++++.+.. ++++||||+||+|+++||||+||||++++|.|+++++...+.... T Consensus 427 ~~~---f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (563) T protein:vir:99 427 TFQ---FVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMM 503 (563) T ss_pred EEE---eccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhc Confidence 232 467889999887754 688999999999999999999999999999999887643222110 Q ss_pred ---------cCCCCCCCCCCCC Q lcl|Aclame:pro 366 ---------RKDVTSTDETNNQ 378 (378) Q Consensus 366 ---------~~~~~~~~e~~~e 378 (378) ....++.++++++ T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~ 525 (563) T protein:vir:99 504 MSLLEGDNDDSEEGQSTDSSND 525 (563) T ss_pred ccccCCCCCCCCCCCCCCCCCC Confidence 0011111111111 No 82 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=4.9e-62 Score=356.72 Aligned_cols=359 Identities=13% Similarity=0.121 Sum_probs=244.8 Q ss_pred CCcccccccccc-ccc------cCCccceeec-------cc---ch-hhhhhHHHHHHHHHHHhhhcc------------ Q lcl|Aclame:pro 1 MNLFGKVVSFSR-GKL------NNDTQRVTAW-------QN---EA-VEYTSAFVTNIHNKIANEITK------------ 50 (378) Q Consensus 1 M~~f~~~~~~~~-~~~------~~~~~~~~~~-------~~---~~-~~~~~~~v~~~i~~ia~~ia~------------ 50 (378) ++++.|-...+. .+. .+...++... .+ -. ..-.+++|++||+++|+.||. T Consensus 43 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~ 122 (563) T protein:vir:95 43 YQDLTKSLYGQQQAYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGL 122 (563) T ss_pred HHHHHhhhccCCCcchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccc Confidence 444444221111 100 0100111100 00 00 111468889999999988885 Q ss_pred -CceEEEEecccccccccceeccCchHHHHHh-c--cCCCC-CCHHHHHHHHHHHHHhcCCcEEEEEE-eCCCceEEEEe Q lcl|Aclame:pro 51 -VEFNHVKYKKSDVGSDTLISMAGSDLDEVLN-W--SPKGE-RNSMDFWRKVIKKLLSAPYVDLYAVF-DDNTGELLDLL 124 (378) Q Consensus 51 -~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~-~--~PN~~-~s~~~f~~~~~~~~ll~Gna~~~~~~-~~~~g~~~~~~ 124 (378) +|+++++++..+. .......|++..+|. . .|||+ +|+++||+.++.+++++||+|+++++ ++..|+++++| T Consensus 123 ~~~i~l~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~ 199 (563) T protein:vir:95 123 GFEVRLRDLDAEPG---RKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFI 199 (563) T ss_pred cceeEEeecCCCcc---hhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEE Confidence 6777776654432 122234577766553 2 23443 58999999999999999999998754 67789999998 Q ss_pred ecCC----------------------------eEEEeeeEEEEE-ccccC----CccccchHHHHHHHHHH--------- Q lcl|Aclame:pro 125 FADD----------------------------KKEYKPEELVRL-TSPFY----INEDTSILDNALASIQT--------- 162 (378) Q Consensus 125 ~~~~----------------------------~~~~~~~dvih~-r~~~~----~~~~~~~~~~~~~~i~~--------- 162 (378) |... ...|+++||||+ +++.. +..|+||+..++.++.. T Consensus 200 pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~ 279 (563) T protein:vir:95 200 AVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFND 279 (563) T ss_pred EeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHH Confidence 7421 124567787755 55432 34588999988877643 Q ss_pred --HHhcCCcceeeeeCC--cCCHHHHHHHHHHHHHHHHHhhccccccce-eEecCCceeeecccchhhhhH-HHHHHHHH Q lcl|Aclame:pro 163 --KLEQGKLRGLLKINA--FLDIDNTQEYREKALTTIKNMQEGSSYNGL-TPVDNKTEIVELKKDYSVLNK-DEIDLIKS 236 (378) Q Consensus 163 --~~~~~~~~gil~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~ 236 (378) +.+++.|+|+|++++ .+++++.+++++.|++.+++ ..++|++ +++++|++|++++++++++++ +.++++++ T Consensus 280 ~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G---~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~ 356 (563) T protein:vir:95 280 RFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSG---INGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLIN 356 (563) T ss_pred HHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhcc---ccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHH Confidence 346789999999875 46888777777777665532 2577775 789999999999999999995 56799999 Q ss_pred HHHHHhCCCHHHhcc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeE Q lcl|Aclame:pro 237 ELLTGYFMNENILLG-----------------TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERI 299 (378) Q Consensus 237 ~Ia~~fgVPp~~l~~-----------------~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~ 299 (378) +||++|||||++|+- .+.+++.++|++.||.||++.||++||++|++..+ . ++ T Consensus 357 ~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~------~----~~ 426 (563) T protein:vir:95 357 IISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG------D----KY 426 (563) T ss_pred HHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc------c----cc Confidence 999999999999961 12467788999999999999999999999997521 1 12 Q ss_pred EecchhhhhcCHHHHHHHHHH--HHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCc------------ Q lcl|Aclame:pro 300 IVDNQLFKFATLKELIDLYHE--NINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGS------------ 365 (378) Q Consensus 300 ~~d~~~l~~~d~~~~~~~~~~--~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~------------ 365 (378) .|+ +++.|.+++++.+.. ++++||||+||+|+++||||+||||++++|.|+++++...+.... T Consensus 427 ~~~---f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (563) T protein:vir:95 427 TFQ---FVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMM 503 (563) T ss_pred EEE---eccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhc Confidence 232 467889999887754 688999999999999999999999999999999887643222110 Q ss_pred ---------cCCCCCCCCCCCC Q lcl|Aclame:pro 366 ---------RKDVTSTDETNNQ 378 (378) Q Consensus 366 ---------~~~~~~~~e~~~e 378 (378) ....++.++++++ T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~ 525 (563) T protein:vir:95 504 MSLLEGDNDDSEEGQSTDSSND 525 (563) T ss_pred ccccCCCCCCCCCCCCCCCCCC Confidence 0011111111111 No 83 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=4.5e-62 Score=356.91 Aligned_cols=322 Identities=14% Similarity=0.150 Sum_probs=235.2 Q ss_pred CCccccccccccccc---cC-Ccc-ceee-----cccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL---NN-DTQ-RVTA-----WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~~~~~~~---~~-~~~-~~~~-----~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) ||||++......... .. ... .... ..+...++.+++|++||++||++||++||++|+.. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~----------- 69 (382) T protein:vir:48 1 MPIFNLATESPPDNQGGFFDVVDSDFLASLKGNEWVSAETALRNSDLFSIINQLSNDLATVKLITSRKK----------- 69 (382) T ss_pred CccccccccCCcccccccccchhhhccccccCCcccchHhhhccHHHHHHHHHHHHhhccCceeeecch----------- Confidence 999998765322111 10 001 1111 12223456788999999999999999999998643 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC----------------------- Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD----------------------- 127 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~----------------------- 127 (378) .+.|+.+||++||+++||+.++.+++++||||++++ ++..|++++++|.. T Consensus 70 ------~~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~-rd~~G~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~ 142 (382) T protein:vir:48 70 ------LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRW-RNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDD 142 (382) T ss_pred ------hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEE-ECCCCcEEEEEEEcCceeEEEEcCCCCeEEEEEEecC Confidence 224667999999999999999999999999999987 67789998888631 Q ss_pred ----CeEEEeeeEEEEEcccc--CCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCHHHHHHHHHH Q lcl|Aclame:pro 128 ----DKKEYKPEELVRLTSPF--YINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDIDNTQEYREK 190 (378) Q Consensus 128 ----~~~~~~~~dvih~r~~~--~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~~~~~~~~~~ 190 (378) ..+.|+++||||||.+. +...|.||+..+..++.. +.+++.|+|+|++++.+++++..++++. T Consensus 143 ~~~~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~~~ 222 (382) T protein:vir:48 143 PRIPPKQHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGGLLDFKTKLSRS 222 (382) T ss_pred ccccceeEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHH Confidence 12357789999999643 235688999888876643 3467899999999999999887666665 Q ss_pred HHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc----cchHHHHHHHHHHH Q lcl|Aclame:pro 191 ALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG----TASQEQQIYFYNST 265 (378) Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~----~~~e~~~~~f~~~~ 265 (378) |.. ...++|+++++++|++|++++.+++++++ +.+++++++||++|||||.+|++ +++++++++|++.| T Consensus 223 ~~~------~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~~~~~~~~~~~ 296 (382) T protein:vir:48 223 RQA------MKQMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQQSSLEMSSDLYSKA 296 (382) T ss_pred HHh------hccCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHH Confidence 543 22567899999999999999999999995 56789999999999999999964 34577889999999 Q ss_pred HHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCC----- Q lcl|Aclame:pro 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQP----- 340 (378) Q Consensus 266 l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p----- 340 (378) |.|+++.|+++|+++|+++.+... ......+.......+.+++++|++|+||+|+.++..+ T Consensus 297 l~p~~~~i~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~~~ 362 (382) T protein:vir:48 297 VSRYLRPFLSELSQKLSCDVDADI--------------FPAVDPTGSNYISRINSLVKTGTLAQNQGLYILQQAEILPKE 362 (382) T ss_pred HHHHHHHHHHHHHHHhcChhhhhh--------------hhhhccchhHHHHHHHHHhhcCccCHHHHHHHHhhCCCCCcc Confidence 999999999999999998654321 1122233344455577889999999999999874333 Q ss_pred CCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 341 IEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 341 ~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++.|+.+. ...++|++++++ T Consensus 363 ~~~~~~~~------------------~~~~GGd~~~~~ 382 (382) T protein:vir:48 363 LPNGENPN------------------STLKGGEEDGQD 382 (382) T ss_pred hhhhhcCC------------------CCCCCCCCCCCC Confidence 23333221 111222222222 No 84 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=1.1e-61 Score=354.82 Aligned_cols=360 Identities=12% Similarity=0.105 Sum_probs=241.1 Q ss_pred CCcccc------------cccc----------ccccccCCccceee--ccc-chhhhhhHHHHHHHHHHHhhhccCc--- Q lcl|Aclame:pro 1 MNLFGK------------VVSF----------SRGKLNNDTQRVTA--WQN-EAVEYTSAFVTNIHNKIANEITKVE--- 52 (378) Q Consensus 1 M~~f~~------------~~~~----------~~~~~~~~~~~~~~--~~~-~~~~~~~~~v~~~i~~ia~~ia~~p--- 52 (378) -.+++. ..+. ..++.+. +..... ... -..+..+++|++||++||+.||++. T Consensus 29 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~l~~l~~~~~~npiv~~~I~~~a~~ia~~~~~~ 107 (547) T protein:vir:63 29 IAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTK-PSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPA 107 (547) T ss_pred hhhhhhhHHHHHHhhcccchhhhchhhheeecccccccC-CccCChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhh Confidence 111111 1111 0010000 000000 000 0122357999999999999999753 Q ss_pred --------eEEEEecccccccccceeccCchHHHHHhccCCCCC-----CHHHHHHHHHHHHHhcCCcEEEEEEeCCCce Q lcl|Aclame:pro 53 --------FNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGER-----NSMDFWRKVIKKLLSAPYVDLYAVFDDNTGE 119 (378) Q Consensus 53 --------~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~-----s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~ 119 (378) |.+ |-...+..........-|.+.++|+ +||+++ |+.+|++.++.+++++||+|++++ ++..|+ T Consensus 108 ~~~~~~~~~~i-r~k~~~~~~~~~~~~~~~~l~~~l~-~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~~i~-rd~~G~ 184 (547) T protein:vir:63 108 RHSEKGVGFEV-RLKDLDKKPTSHDEATIKRIESFIE-KTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKV-FNRNQS 184 (547) T ss_pred hhhccCCCcee-EecccccccChhhHHHHHHHHHHHH-hhCCCCCCccchHHHHHHHHHHHHHhhCCEEEEEE-ECCCCc Confidence 221 1111111111112223367778886 799874 889999999999999999999987 678899 Q ss_pred EEEEeecCC----------------------------eEEEeeeEEEEEcc-ccC----CccccchHHHHHHHHHH---- Q lcl|Aclame:pro 120 LLDLLFADD----------------------------KKEYKPEELVRLTS-PFY----INEDTSILDNALASIQT---- 162 (378) Q Consensus 120 ~~~~~~~~~----------------------------~~~~~~~dvih~r~-~~~----~~~~~~~~~~~~~~i~~---- 162 (378) ++++||... .+.|+++||||+|. +.. +..|+||+..+..++.. T Consensus 185 ~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~~~~~~~~G~Spi~~~~~~i~~~~~a 264 (547) T protein:vir:63 185 MVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENT 264 (547) T ss_pred EEEEEEecCceeEEEECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCCCcccccccccHHHHHHHHHHHHHHH Confidence 998887421 23567889999984 322 33488999888876642 Q ss_pred -------HHhcCCcceeeeeCCc--CCHHHHHHHHHHHHHHHHHhhccccccceeEe-cCCceeeecccchhhhhH-HHH Q lcl|Aclame:pro 163 -------KLEQGKLRGLLKINAF--LDIDNTQEYREKALTTIKNMQEGSSYNGLTPV-DNKTEIVELKKDYSVLNK-DEI 231 (378) Q Consensus 163 -------~~~~~~~~gil~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~~~~l~~~~~~~~~-~~~ 231 (378) +.|+++|+|+|.+++. +++++.+++++.|++.++ +..|+|+++++ ++|++|++++++++++++ +.+ T Consensus 265 ~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~---G~~nagk~~vl~~~g~~~~~l~~~~~d~qfle~~ 341 (547) T protein:vir:63 265 EAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLS---GINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWL 341 (547) T ss_pred HHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhc---CcccccccccccCCCceEEEcCCChhHHHHHHHH Confidence 3467789999988654 788887777777766654 23678887555 789999999999999996 567 Q ss_pred HHHHHHHHHHhCCCHHHhcc----------------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccc Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENILLG----------------TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLY 295 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~l~~----------------~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~ 295 (378) ++++++||++|||||++|+- .+.+++..+|++.||.|+++.||++||++|++..+ . T Consensus 342 ~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~~------~-- 413 (547) T protein:vir:63 342 NYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFG------D-- 413 (547) T ss_pred HHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC------C-- Confidence 99999999999999999961 23467888999999999999999999999986421 1 Q ss_pred eeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCC-CCCCCeeeecccceecccchhccCcc-------- Q lcl|Aclame:pro 296 YERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQP-IEGGDVYIANLNAVAVKNLSDLQGSR-------- 366 (378) Q Consensus 296 ~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p-~~gGD~~~~~~n~~~~~~~~~~~~~~-------- 366 (378) .++|+|+ .+.+.+..++++++ +++..|+||+||+|+++|||| +||||+++.|.++.+++...+.+..+ T Consensus 414 ~~~~~f~--~~~~~~~~~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (547) T protein:vir:63 414 KYTFQFV--GGDIKSELESVKIL-AEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNL 490 (547) T ss_pred ceEEEee--ccccccHHHHHHHH-HHHhCCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCCccccchhhc Confidence 2344554 56777888887765 477889999999999999999 79999999999988775332211100 Q ss_pred ----------CCCCCCCCC-----CCC Q lcl|Aclame:pro 367 ----------KDVTSTDET-----NNQ 378 (378) Q Consensus 367 ----------~~~~~~~e~-----~~e 378 (378) .+..+.++. +.+ T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (547) T protein:vir:63 491 QMLQEQTGNRVSTDVEDIPDGKDTTGD 517 (547) T ss_pred cccccccCCCCCCCCCCCCCCcccCCC Confidence 000000000 000 No 85 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=4.1e-61 Score=351.65 Aligned_cols=345 Identities=12% Similarity=0.094 Sum_probs=243.6 Q ss_pred cccccc---cccccc-------ccC-Cccceeecc-------c-chhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 3 LFGKVV---SFSRGK-------LNN-DTQRVTAWQ-------N-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 3 ~f~~~~---~~~~~~-------~~~-~~~~~~~~~-------~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) +|+... +..+.. ... ....+..|. . ..+.+.+++|++||++||++||++|++++.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~~----- 75 (540) T protein:vir:41 1 MFNYHLSIKSLEKYRAIKGDTDSQALKEDRFEEYVEPKVHPLVLLSLLQVNPYHASACSIKANDILRTGYLIDGD----- 75 (540) T ss_pred CCCcccChhhccchhhhhccccccccccCCCCccccCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCceEecC----- Confidence 444322 211110 000 000011111 0 1344578899999999999999999987532 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCC--------------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADD--------------- 128 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~--------------- 128 (378) ++.+.++ .||++||+++||+.++.+++++||||++++ ++..|++.+++|... T Consensus 76 ---------~~~~~~~---lpN~~~t~~~f~~~~v~dlll~Gnayv~i~-r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~ 142 (540) T protein:vir:41 76 ---------DGGVEEL---LRACRPSFEFILLQALEDLQVFNYCTLEVV-RDDQGEPVRLDYIPAHTVRVHRDGSRYMQT 142 (540) T ss_pred ---------ccchhhh---ccCCCCCHHHHHHHHHHHHHhcCCeEEEEE-ECCCCcEEEEEEeCCcceEEeEcCceeEee Confidence 3445554 499999999999999999999999999987 677899998887421 Q ss_pred -------------------------eEEEeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCcc Q lcl|Aclame:pro 129 -------------------------KKEYKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKLR 170 (378) Q Consensus 129 -------------------------~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~ 170 (378) .+.|+++||||||.+ .++..|+||+..++.++.. +.|++.|+ T Consensus 143 ~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~ 222 (540) T protein:vir:41 143 WDGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPS 222 (540) T ss_pred ecCceeeeeecccccceeeccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 124678899999964 4566789999887776532 44778999 Q ss_pred eeeeeCCcCCHH------HHHHHHHHHHHHHHHhhcc--ccccceeEec------CCceeeecccchhhhhH-HHHHHHH Q lcl|Aclame:pro 171 GLLKINAFLDID------NTQEYREKALTTIKNMQEG--SSYNGLTPVD------NKTEIVELKKDYSVLNK-DEIDLIK 235 (378) Q Consensus 171 gil~~~~~l~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~------~g~~~~~l~~~~~~~~~-~~~~~~~ 235 (378) |+|++++.++++ ...+.++.|++.|.+...+ .++|++++++ .|++|++++++++++++ +.+++++ T Consensus 223 giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~ 302 (540) T protein:vir:41 223 YVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKK 302 (540) T ss_pred eEEEeCcccCchhccchHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHH Confidence 999998776544 3456677788888776655 5788899984 79999999999999996 5568999 Q ss_pred HHHHHHhCCCHHHhc----cc----chHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhh Q lcl|Aclame:pro 236 SELLTGYFMNENILL----GT----ASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFK 307 (378) Q Consensus 236 ~~Ia~~fgVPp~~l~----~~----~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~ 307 (378) ++||++|||||.+|| ++ +.+++.+.|+++||.|++++||++||++|+++.+ . .+++.|+.+.++ T Consensus 303 ~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~------~--~~~i~f~~~~ll 374 (540) T protein:vir:41 303 HDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKLD------P--GARFVFNEEILM 374 (540) T ss_pred HHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC------C--ceEEEecchhhc Confidence 999999999999995 22 3478889999999999999999999999987532 1 245677888899 Q ss_pred hcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC-CCCeeeecccceecccchhccCccCCCCC------------CCC Q lcl|Aclame:pro 308 FATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE-GGDVYIANLNAVAVKNLSDLQGSRKDVTS------------TDE 374 (378) Q Consensus 308 ~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~-gGD~~~~~~n~~~~~~~~~~~~~~~~~~~------------~~e 374 (378) +.|.+++ +.+++++|++|+||+|+.+ +|+| ++|.+++|.|+...+..++....+++..+ .++ T Consensus 375 ~~D~~~~---~~~lv~~G~lT~NE~Re~L--~g~e~gdd~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 449 (540) T protein:vir:41 375 ESEFVHN---YALLVQCGVLTPSEVREKL--FGLDGGPDMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQE 449 (540) T ss_pred chHHHHH---HHHHHhCCCCCHHHHHHHh--CcCcCCCcccccccccccccccccccccCCCCccccccccchhcccccC Confidence 9876655 6678999999999999854 4444 45667788888654432221111111000 000 Q ss_pred CCCC Q lcl|Aclame:pro 375 TNNQ 378 (378) Q Consensus 375 ~~~e 378 (378) +.++ T Consensus 450 ~~~~ 453 (540) T protein:vir:41 450 IISS 453 (540) T ss_pred cccc Confidence 0000 No 86 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=1e-59 Score=343.96 Aligned_cols=344 Identities=12% Similarity=0.082 Sum_probs=237.2 Q ss_pred ccccccccccc---------cccCCcc---ceeecc----c----chhhhhhHHHHHHHHHHHhhhccCceEEEEecccc Q lcl|Aclame:pro 3 LFGKVVSFSRG---------KLNNDTQ---RVTAWQ----N----EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) Q Consensus 3 ~f~~~~~~~~~---------~~~~~~~---~~~~~~----~----~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 62 (378) +|++..+.... ....... .+..+. + ..+.+++++|++||++||++||++||++++.. T Consensus 1 ~~~~~~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~~pp~~~~~la~l~~~n~~v~scI~~ia~~IA~l~~~~~~~~--- 77 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKREEVESQALGETRFEEYVEPKVNPLVLLSLLQVNPYHASACSIKANDIIRTGYILEGDD--- 77 (542) T ss_pred CccccccccccccchhhhhccccccccccccCCccccCCCCHHHHHHHHhhcHHHHHHHHHHHHHHhhCceeeeccc--- Confidence 88854443211 0010000 000110 0 12445678999999999999999999986422 Q ss_pred cccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCCe------------- Q lcl|Aclame:pro 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADDK------------- 129 (378) Q Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~~------------- 129 (378) .+. +++..|||+||+++||+.++.+++++||||++++ ++..|++.+++|.... T Consensus 78 ----------~~~---l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~-rd~~G~~~~L~~l~~~~v~v~~d~~~~~~ 143 (542) T protein:vir:41 78 ----------EGV---VDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVV-RDDRGDPIRFEYIPSHTIRVHKDGSRYRQ 143 (542) T ss_pred ----------chh---hhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEE-EcCCCcEEEEEEEcCcceEEEEcCCeeEe Confidence 122 3344699999999999999999999999999986 6788999998874210 Q ss_pred ---------------------------EEEeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCc Q lcl|Aclame:pro 130 ---------------------------KEYKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKL 169 (378) Q Consensus 130 ---------------------------~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~ 169 (378) ..++++||||||++ .++..|+|++..++.++.. +.|++.| T Consensus 144 ~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p 223 (542) T protein:vir:41 144 TWDGVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIP 223 (542) T ss_pred eecCCcceeEEeecccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCc Confidence 12456799999964 4455688999888776532 4467899 Q ss_pred ceeeeeCCcC----------CHHHHHHHHHHHHHHHHHhhccccccceeEe------cCCceeeecccchhhhhH-HHHH Q lcl|Aclame:pro 170 RGLLKINAFL----------DIDNTQEYREKALTTIKNMQEGSSYNGLTPV------DNKTEIVELKKDYSVLNK-DEID 232 (378) Q Consensus 170 ~gil~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~g~~~~~l~~~~~~~~~-~~~~ 232 (378) +|+|++++.+ ++++.+++++.|++.+++. ..+.++++++ ++|++|++++++++++++ +.++ T Consensus 224 ~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~--~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~ 301 (542) T protein:vir:41 224 SYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHL--KEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAA 301 (542) T ss_pred cEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhh--hcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHH Confidence 9999987643 4556666666666665432 1467788888 479999999999999996 5568 Q ss_pred HHHHHHHHHhCCCHHHhcc--------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecch Q lcl|Aclame:pro 233 LIKSELLTGYFMNENILLG--------TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) Q Consensus 233 ~~~~~Ia~~fgVPp~~l~~--------~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~ 304 (378) +++++||++|||||.+|+. ++.|+++..|++.||.|+++.||++||++|+++.++ .+.+.|+.. T Consensus 302 ~~~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~--------~~~~~f~~~ 373 (542) T protein:vir:41 302 EKKYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFNP--------KTRFKFNDE 373 (542) T ss_pred HHHHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC--------ceEEEecch Confidence 9999999999999999952 335788999999999999999999999999876432 235677778 Q ss_pred hhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC-CeeeecccceecccchhccCc--------cCCCCCCCCC Q lcl|Aclame:pro 305 LFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG-DVYIANLNAVAVKNLSDLQGS--------RKDVTSTDET 375 (378) Q Consensus 305 ~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG-D~~~~~~n~~~~~~~~~~~~~--------~~~~~~~~e~ 375 (378) .+++.|.+ +.+..++++|++|+||+|+.+ +++|+| |.++.|.|.........++.. ++...+++.+ T Consensus 374 ~ll~~d~~---~~~~~~v~~GilT~NE~Re~L--~g~~pgdd~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~ 448 (542) T protein:vir:41 374 TLLESDSV---RNCALLVQSGVLTPAEARERL--FGLDGGPDIFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYRPR 448 (542) T ss_pred hhcchHHH---HHHHHHHhCCCCCHHHHHHhh--CCCCCCCccccccccccccccccCCcCCCCCchhhhhhcccccCcc Confidence 88887754 446778999999999999753 444444 455667776533211111000 0111111111 Q ss_pred CCC Q lcl|Aclame:pro 376 NNQ 378 (378) Q Consensus 376 ~~e 378 (378) -+| T Consensus 449 ~~~ 451 (542) T protein:vir:41 449 FNE 451 (542) T ss_pred ccc Confidence 111 No 87 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=1.2e-56 Score=327.16 Aligned_cols=356 Identities=9% Similarity=0.003 Sum_probs=242.6 Q ss_pred CCcccccccccccccc--CCccceeecccchhhhhhHHHHHHHHHHHhhhcc------CceEEEEecccccccccceecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLN--NDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITK------VEFNHVKYKKSDVGSDTLISMA 72 (378) Q Consensus 1 M~~f~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~------~p~~~~~~~~~~~~~~~~~~~~ 72 (378) |+|+.+...-.....+ +.......+....+.---.+.++|+.+|.+..++ +|.+.+|....+ ... T Consensus 102 ~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g~pv~L~~lp~~~~Rv~~~~-------~~~ 174 (651) T protein:vir:99 102 RNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEGRPVGLAYVPARTVRVRRPQ-------NRF 174 (651) T ss_pred HHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCccchhhhhhcChhheeeeccc-------ccc Confidence 3332221110000000 1111111122111111123568899999987654 566666654332 235 Q ss_pred CchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe---------------------------- Q lcl|Aclame:pro 73 GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL---------------------------- 124 (378) Q Consensus 73 ~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~---------------------------- 124 (378) +|+++.+|+.+||++|+...|.+.+ +++..+++|+++ +.+..+.+..++ T Consensus 175 ~~~~~~ll~~~pn~~~~~~~~~~~~--q~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~~~~~ 251 (651) T protein:vir:99 175 DQPRHPEEGRYVDGDVADIASRGYV--QIRNGNRRYFGE-AGDRYRGQEVVIDESGDEPTIRYREDEESEREPIFVDRET 251 (651) T ss_pred cchhhhhhhcccccccchhHHHHHH--HHHhcCcceEEE-eeccccceeeeeccCCcceeEEeccCcceeeeeeccccee Confidence 7899999999999999999887653 445555555433 222222211110 Q ss_pred ------ecCCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCC-cCCHHHH Q lcl|Aclame:pro 125 ------FADDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINA-FLDIDNT 184 (378) Q Consensus 125 ------~~~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~-~l~~~~~ 184 (378) ..+....|+++||||||.+ .++..|+|++..++.++.. +.|++.++|+|+.++ .+++++. T Consensus 252 g~~~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p~gil~~~~~~ls~e~~ 331 (651) T protein:vir:99 252 GDVTTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIPRMVIKVTGGELSEESK 331 (651) T ss_pred eeEEEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHH Confidence 1123456789999999964 4556789999988776642 346778999999875 5899988 Q ss_pred HHHHHHHHHHHHHhhccccccceeEecC-----------Cceeeecccch-hhhhH-HHHHHHHHHHHHHhCCCHHHhc- Q lcl|Aclame:pro 185 QEYREKALTTIKNMQEGSSYNGLTPVDN-----------KTEIVELKKDY-SVLNK-DEIDLIKSELLTGYFMNENILL- 250 (378) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------g~~~~~l~~~~-~~~~~-~~~~~~~~~Ia~~fgVPp~~l~- 250 (378) +++++.|++.+ .|++++++|+. |++|++|++++ +++++ +.+++++++||++|||||.+|+ T Consensus 332 ~~lr~~~~~~~------~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa~afgVPp~~lG~ 405 (651) T protein:vir:99 332 RDLRQMLNGLR------EESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEIAKVLEVPPVKIGV 405 (651) T ss_pred HHHHHHHHHHh------ccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHHHHHhCCCHHHhcc Confidence 88888887643 35677888754 99999999876 58886 5568999999999999999995 Q ss_pred ---c--cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCC Q lcl|Aclame:pro 251 ---G--TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGP 325 (378) Q Consensus 251 ---~--~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G 325 (378) + ++.|++.+.|+++||.|++++||++||++||++.++..+ +.++|+|+...+++.|.+++++++.+++++| T Consensus 406 ~~~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~----~~i~~ef~~~~llr~D~~~~~e~~~~~i~~G 481 (651) T protein:vir:99 406 TDSANRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTD----WTIEYELRGADQPKQEAQLAEQRVRAMRLAG 481 (651) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccC----ceEEEEeccchhhhccHHHHHHHHHHHHhCC Confidence 2 234888999999999999999999999999998776554 3567888889999999999999999999999 Q ss_pred CCCHHHHHHHhCCCCCCC--CCeeeecccceecccchhccCccCCCC-----CCCCCCCC Q lcl|Aclame:pro 326 IFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSRKDVT-----STDETNNQ 378 (378) Q Consensus 326 ~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~~~~~~~~~~-----~~~e~~~e 378 (378) |||+||+|+++||||+++ ||..+.+.++.......+ +++++.. ..+.+..| T Consensus 482 ~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~--gge~~~~~~~~~~~~~~~~e 539 (651) T protein:vir:99 482 VGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAG--GGETEAVHEPPEENKIGERE 539 (651) T ss_pred CcCHHHHHHHhCCCCCCCcccccccccccccccccccc--CCCCcccccCccccccccch Confidence 999999999999999964 899888887776553221 1111111 11111111 No 88 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=2.6e-54 Score=314.32 Aligned_cols=355 Identities=10% Similarity=0.071 Sum_probs=218.5 Q ss_pred CCccccc-cccccccc-----cCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCc Q lcl|Aclame:pro 1 MNLFGKV-VSFSRGKL-----NNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) Q Consensus 1 M~~f~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~ 74 (378) |..|.+. .....+.. ..+...+... ..+...+++|++||++||++||++||.++.+... .+..+ T Consensus 59 ~~~~~r~g~~~~~~~~g~~~~~epp~d~~~l--~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~--------~~~~~ 128 (648) T protein:vir:79 59 MSLVKRIGLAIMDGGGGGRDFEEPEFDFNEI--TSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPN--------AVEYI 128 (648) T ss_pred hHHHHHhHHHHHhhcCCccccccCCcCHHHH--HHHHhcChHHHHHHHHHHHHHhhCcceEEecCCc--------cchhh Confidence 2223221 00110111 1111111110 1233468999999999999999999987554311 22334 Q ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCce---------------EEEEeecC------------ Q lcl|Aclame:pro 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGE---------------LLDLLFAD------------ 127 (378) Q Consensus 75 ~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~---------------~~~~~~~~------------ 127 (378) ++.. |..+||++||+++||+.++.+++++||||++++ ++..|. +..+||.+ T Consensus 129 ~~~~-ll~rPn~~~t~~~f~~~l~~~lll~GNAYveii-Rd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g 206 (648) T protein:vir:79 129 RMRF-TLMAEATQIPTNQLFIEIAEDLVKYCNVVIAKS-RAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFG 206 (648) T ss_pred HHHH-HhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEE-ecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCC Confidence 4444 446999999999999999999999999999987 454442 23344321 Q ss_pred -------------CeEEEeeeEEEEEcc--ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCC-cCC Q lcl|Aclame:pro 128 -------------DKKEYKPEELVRLTS--PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINA-FLD 180 (378) Q Consensus 128 -------------~~~~~~~~dvih~r~--~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~-~l~ 180 (378) ..+.|+++||||||. +.+...|+||+..++++|.. +.|++.|+|+++++. ... T Consensus 207 ~~~~Y~y~~~g~~~~~~~~~~dIIHik~~~~~d~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~ 286 (648) T protein:vir:79 207 MIKGWQQEQEGQDKPQKFKPEDIVHIYYKREKGRAFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEG 286 (648) T ss_pred ceeeeEEEecCCceeEEecCccEEEEccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCccc Confidence 124578899999994 34555689999888887743 346788999998753 223 Q ss_pred HHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeeccc----chhhhhH-HHHHHHHHHHHHHhCCCHHHhcc---- Q lcl|Aclame:pro 181 IDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKK----DYSVLNK-DEIDLIKSELLTGYFMNENILLG---- 251 (378) Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~----~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~---- 251 (378) .+..++.+++|++.+++ ..+.+++.+++.+.+ +++++++ +.+++++++||++|||||++|+- T Consensus 287 ~e~~k~~~e~~~~~~~~---------~~i~gg~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~s 357 (648) T protein:vir:79 287 FGAEEGEVDLVRGEVEN---------MDVEGGMVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGGTA 357 (648) T ss_pred hHHHHHHHHHHHHhccc---------ccccccccccceeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCCCc Confidence 44444555555544432 122333344444433 5578885 45689999999999999999962 Q ss_pred c-chHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhc----cccceeeEEecchhhhhcCHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 252 T-ASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVK----GNLYYERIIVDNQLFKFATLKELIDLYHENINGPI 326 (378) Q Consensus 252 ~-~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~----~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~ 326 (378) + ++.++...++..+|.|++..++..++.+++.......++ ...++++| +.+++++.|.+++++.+.+++++|| T Consensus 358 s~stae~~~~~~~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~~ieF--~~~~Llr~D~~~~a~~~~~l~~~Gi 435 (648) T protein:vir:79 358 SRSTGDNLSSDFKDRIKALQKVMATFINEFMVKEILMEGGFDPVLNPDDKVEF--RFNEIDMDSKIKLENQAVFLYEHNA 435 (648) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccceEEE--eecccchhhHHHHHHHHHHHHhCCC Confidence 1 223444556677888888777766665543322222221 12234444 4568999999999999999999999 Q ss_pred CCHHHHHHHhCCCCCCCCC-eeeecccceecccchhccCcc------C-----------CCCCCCCCCCC Q lcl|Aclame:pro 327 FTQNQLLVKMGEQPIEGGD-VYIANLNAVAVKNLSDLQGSR------K-----------DVTSTDETNNQ 378 (378) Q Consensus 327 ~t~NE~R~~~gl~p~~gGD-~~~~~~n~~~~~~~~~~~~~~------~-----------~~~~~~e~~~e 378 (378) ||+||+|+++||||+|+|+ ..++..++.+........+.+ . +.++.+.++|+ T Consensus 436 lT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~~e~~~~~~~~~~ 505 (648) T protein:vir:79 436 ISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSASASGDKKKKATDNKTKPTNQ 505 (648) T ss_pred cCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCCCCCCCCCccccccccccCCCCCCCCC Confidence 9999999999999999875 345666665543221111000 0 00000111111 No 89 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=2.3e-51 Score=298.25 Aligned_cols=236 Identities=15% Similarity=0.175 Sum_probs=197.4 Q ss_pred hccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec- Q lcl|Aclame:pro 48 ITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA- 126 (378) Q Consensus 48 ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~- 126 (378) ||++||++|++++. .+|+++++|+.+|||+||+++||+.++.+++++||||++++ ++..|++.++||. T Consensus 1 ia~l~~~~~~~~~~----------~~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~-r~~~G~~~~l~~l~ 69 (278) T protein:vir:78 1 MASLPLKMYEDYKV----------VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQPSKLFLLN 69 (278) T ss_pred CccceeEEEecCcc----------cccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEE-ECCCCcEEEEEEEC Confidence 99999999986532 47999999999999999999999999999999999999987 6788999888873 Q ss_pred -----------------------CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHHH---------HhcCCccee Q lcl|Aclame:pro 127 -----------------------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQTK---------LEQGKLRGL 172 (378) Q Consensus 127 -----------------------~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~~---------~~~~~~~gi 172 (378) +.++.|+++||||+|++ .+...|.|++..+..++... .+++.++++ T Consensus 70 ~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 149 (278) T protein:vir:78 70 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFM 149 (278) T ss_pred CceeEEEEcCCCceEEEEEEcCCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE Confidence 13356889999999964 34445889988887766432 345578899 Q ss_pred eeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcc Q lcl|Aclame:pro 173 LKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG 251 (378) Q Consensus 173 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~ 251 (378) +..++.+++++.++++++|++.+ .++++++++++|++|++++++++++++ +.+++++++||++|||||.+++. T Consensus 150 ~~~~~~l~~e~~~~~~~~~~~~~------~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~ 223 (278) T protein:vir:78 150 LKYGSNVGKEKRQQVLEDFKQYY------EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNA 223 (278) T ss_pred EEeCCCCCHHHHHHHHHHHHHHh------ccCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC Confidence 99999999998888878777644 356789999999999999999999996 55689999999999999999963 Q ss_pred ----c--chHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhh Q lcl|Aclame:pro 252 ----T--ASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLF 306 (378) Q Consensus 252 ----~--~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l 306 (378) + +.+++.++|++.||.|+++.|+++||++||++.++..|+ + +.||.++| T Consensus 224 ~~~~~~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~----~--~~f~~~~l 278 (278) T protein:vir:78 224 RSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIG----I--LNLTLNLI 278 (278) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCc----e--EEEecccC Confidence 2 236788999999999999999999999999999887664 3 55666666 No 90 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=7.2e-42 Score=246.16 Aligned_cols=283 Identities=8% Similarity=-0.011 Sum_probs=194.1 Q ss_pred CCcccccccccc---------------------------ccccCCccceee----------cccchhhhhhHHHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSR---------------------------GKLNNDTQRVTA----------WQNEAVEYTSAFVTNIHNK 43 (378) Q Consensus 1 M~~f~~~~~~~~---------------------------~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~i~~ 43 (378) |+= |.++-.+ .+.-+++..+.. +.+ ...|+.|+-+.|+.. T Consensus 1 m~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~-~~~~~~pi~~~~la~ 77 (368) T protein:vir:79 1 MSR--NKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRM-GQWYEPPMPWDGLAR 77 (368) T ss_pred CCc--cccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhc-cchhccCcCHHHHHH Confidence 321 1111100 000011110100 000 112222323333333 Q ss_pred HHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE Q lcl|Aclame:pro 44 IANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL 123 (378) Q Consensus 44 ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~ 123 (378) +.+.- +.+ +.....+|++..++. +|||+||+++|++ ++.++++.||||++++ ++..|+++++ T Consensus 78 ~~~~~---~~h------------~~~~~~~~n~l~l~~-~Pn~~~t~~~f~~-l~~d~ll~Gnay~~~~-r~~~G~~~~L 139 (368) T protein:vir:79 78 SFRAA---AHH------------SSAVYVKRNILVSTF-IPHPLLSRATFER-LVLDWQVFGNAYLERR-ENVLGGTIRL 139 (368) T ss_pred HHhhc---ccc------------chhhhhhcchhhhhc-CCCcCCCHHHHHH-HHHHHhhcCCeEEEEE-EcCCCCEEEE Confidence 32221 111 122345788887774 8999999999986 6789999999999987 6788999998 Q ss_pred eec--------------------CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCcc Q lcl|Aclame:pro 124 LFA--------------------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKLR 170 (378) Q Consensus 124 ~~~--------------------~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~ 170 (378) +|. +..++|+++||||+|++ .+...|++++..+++++.. +.|++.++ T Consensus 140 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~ 219 (368) T protein:vir:79 140 DTPLAKYVRRGLDLNTYFFVQNWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAG 219 (368) T ss_pred EEeCcccceeeccCCEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 874 23456889999999964 4456789999888876642 35778899 Q ss_pred eeeeeC-CcCCHHHHHHHHHHHHHHHHHhhccccccceeEe-----cCCceeeecccchhhhhH-HHHHHHHHHHHHHhC Q lcl|Aclame:pro 171 GLLKIN-AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYF 243 (378) Q Consensus 171 gil~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fg 243 (378) |||.++ ..+++++.++++++|++ ..+..|.++++++ ++|++|++++.+++++++ +..++++++||++|| T Consensus 220 gil~~~~~~l~~e~~~~lk~~~~~----~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~ 295 (368) T protein:vir:79 220 FILYMTDAAQKQEDVDTLREAMKS----AKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHR 295 (368) T ss_pred eEEEeCCCCCCHHHHHHHHHHHHH----hcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhC Confidence 999876 56888887777766654 3456788899988 689999999999999996 456899999999999 Q ss_pred CCHHHhc----c----cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHH Q lcl|Aclame:pro 244 MNENILL----G----TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELI 315 (378) Q Consensus 244 VPp~~l~----~----~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~ 315 (378) |||.+++ + +..|++.+.|+++||.|+++.|| ++|.+|..+ .+.|+...|++.|.++++ T Consensus 296 VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie-~ln~~l~~e-------------~~rF~~~~l~~~D~~a~a 361 (368) T protein:vir:79 296 VPPQLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQDRLL-AINDWIGDE-------------VVRFAPYALGGHDQPAAA 361 (368) T ss_pred CCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHhccCcc-------------eeeechhHhhcccccccC Confidence 9999995 1 23478889999999999999998 688776321 256888899999999998 Q ss_pred HHHHHHHhCC Q lcl|Aclame:pro 316 DLYHENINGP 325 (378) Q Consensus 316 ~~~~~~~~~G 325 (378) ....+ +. T Consensus 362 ~~~~r---sa 368 (368) T protein:vir:79 362 PGGQR---SA 368 (368) T ss_pred Ccccc---cC Confidence 73322 11 No 91 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=1.7e-39 Score=233.18 Aligned_cols=291 Identities=7% Similarity=0.034 Sum_probs=183.5 Q ss_pred CCccccccccccccccCCccceeecc-cchhhhhhHHHHHHHHHHHhhhccC---ceEE------EEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQ-NEAVEYTSAFVTNIHNKIANEITKV---EFNH------VKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~i~~ia~~ia~~---p~~~------~~~~~~~~~~~~~~~ 70 (378) |. .+........-......++ +. .....+....++.|+..+.+..... |+.. ++....- ...+. T Consensus 1 ~~--~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h---~~~i~ 74 (348) T protein:vir:26 1 MT--EQLIHSHTTDGTESKSVYS-FDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYH---GSLLK 74 (348) T ss_pred CC--ccccchhhccccCCceEEE-ecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhh---hhhHh Confidence 33 1111111011111111111 11 1111123334566666665443321 2210 1000000 00000 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec-------------------CCeEE Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA-------------------DDKKE 131 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~-------------------~~~~~ 131 (378) ...+-+.. ..+|||+||+.+|++. +.++++.||||++++ |+..|+++.++|. +..+. T Consensus 75 ~k~N~l~~--~~~Pn~~~t~~~f~~~-~~d~ll~Gnay~~~~-rn~~G~~~~L~~l~~~~v~~~~d~~~~~~~~~g~~~~ 150 (348) T protein:vir:26 75 ARANYVAG--RFMNGGGLPMYKMNSA-CWDYFGLGMSAFVKI-RSYLKNVIALEPLPMVHMRKRKNGDFVQLLRNNEQKV 150 (348) T ss_pred hhhhHHhh--cccCCCCCCHHHHHHH-HHHHHhcCCeEEEEE-EcCCCcEEEEEEecCceeEeeecCcEEEEEecCeEEE Confidence 00011111 1369999999999876 569999999999986 7888999988874 23457 Q ss_pred EeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeC-CcCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 132 YKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKIN-AFLDIDNTQEYREKALTTIKN 197 (378) Q Consensus 132 ~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~-~~l~~~~~~~~~~~~~~~~~~ 197 (378) |+++||||||.+ .+...|++++..+++++.. +.|++.+.|||..+ ..+++++.++++++|++ T Consensus 151 f~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls~e~~~~lk~~~~~---- 226 (348) T protein:vir:26 151 FKAKDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLSEADEKALKEKIAS---- 226 (348) T ss_pred EcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHH---- Confidence 889999999964 4455688898888877632 45677899999765 46888776666665544 Q ss_pred hhccccccceeEe-----cCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc------cc--chHHHHHHHHH Q lcl|Aclame:pro 198 MQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL------GT--ASQEQQIYFYN 263 (378) Q Consensus 198 ~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~------~~--~~e~~~~~f~~ 263 (378) ..++.|.++++++ ++|+++++++.++++.++ +..++++++||++|||||.++| ++ ..|++.+.|++ T Consensus 227 ~~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~ 306 (348) T protein:vir:26 227 SKGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDF 306 (348) T ss_pred hcCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHH Confidence 4455778888888 789999999999999996 4468899999999999999985 22 34788999999 Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHH Q lcl|Aclame:pro 264 STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKEL 314 (378) Q Consensus 264 ~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~ 314 (378) ++|.|+++.||++||++|..+. ..+++|+|+. ..++.|..+. T Consensus 307 ~~l~P~~~~ie~~ln~~l~~~~--------~~~~~fdl~~-~~e~~~~~a~ 348 (348) T protein:vir:26 307 YEVIPVCKRFMDAVNNDPEIPD--------NLKLKFNLNP-GVESANGSAV 348 (348) T ss_pred HHHHHHHHHHHHHHhhhhCCCC--------ccEEEEecCc-ccccchhhcC Confidence 9999999999999999986432 2334555543 2333333222 No 92 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=1.4e-39 Score=233.52 Aligned_cols=263 Identities=14% Similarity=0.095 Sum_probs=182.0 Q ss_pred CCccc--ccccccccccc--CCcccee----ecccc-------------hhhhhhHHHHHHHHHHHhhhccCceEEEEec Q lcl|Aclame:pro 1 MNLFG--KVVSFSRGKLN--NDTQRVT----AWQNE-------------AVEYTSAFVTNIHNKIANEITKVEFNHVKYK 59 (378) Q Consensus 1 M~~f~--~~~~~~~~~~~--~~~~~~~----~~~~~-------------~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~ 59 (378) +.-.. +...|+-+.+. -+...++ .|.+. .+...++...+||...++.+++ T Consensus 45 ~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s~l~~k~n~l~~--------- 115 (376) T protein:vir:10 45 AGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSALFFKANVLAS--------- 115 (376) T ss_pred hhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhhhHHHHhHHHHh--------- Confidence 21111 11111111100 0000000 00000 1112333444455444443332 Q ss_pred ccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC------------ Q lcl|Aclame:pro 60 KSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------ 127 (378) Q Consensus 60 ~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~------------ 127 (378) ..+|||+||+.+|++. +.++++.||||++++ ++..|++++++|.. T Consensus 116 ---------------------~~~Pnp~lT~~~f~~~-v~d~ll~Gnay~~~~-rn~~G~~~~L~pl~~~~vr~~~d~~~ 172 (376) T protein:vir:10 116 ---------------------TFRPHRWLSRHAFERW-ALDFLTFGNGYLERR-RNMVGGTLRLEPALAKYVRRKADFNG 172 (376) T ss_pred ---------------------ccCCCCCCCHHHHHHH-HHHHHhcCCeEEEEE-ECCCCCEEEEEEeCCcceEEEeeCCe Confidence 1379999999999865 568999999999987 78899999998742 Q ss_pred --------CeEEEeeeEEEEEccc--cCCccccchHHHHHHHHH-----------HHHhcCCcceeeeeC-CcCCHHHHH Q lcl|Aclame:pro 128 --------DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQ-----------TKLEQGKLRGLLKIN-AFLDIDNTQ 185 (378) Q Consensus 128 --------~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~-~~l~~~~~~ 185 (378) ..+.|+++||||||.+ .+...|++++..+++++. .+.|++.++|||..+ ..+++++.+ T Consensus 173 ~~~~~~~~~~~~~~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~~~d~~l~~e~~~ 252 (376) T protein:vir:10 173 FVYVNGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVD 252 (376) T ss_pred EEEEEcCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHH Confidence 2346889999999964 445568889888877663 245678899999876 578888877 Q ss_pred HHHHHHHHHHHHhhccccccceeEe-----cCCceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhc----c---- Q lcl|Aclame:pro 186 EYREKALTTIKNMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL----G---- 251 (378) Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~----~---- 251 (378) +++++|++ ..+..|.++++++ ++|++|++++.+++++++. ..++++++||++|||||.++| + T Consensus 253 ~lr~~~~~----~~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~ 328 (376) T protein:vir:10 253 NMRDALKN----AKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGF 328 (376) T ss_pred HHHHHHHH----hcCccccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCc Confidence 77766654 3355778888887 5799999999999999964 468899999999999999985 1 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHH Q lcl|Aclame:pro 252 TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKE 313 (378) Q Consensus 252 ~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~ 313 (378) ++.|++.+.|+++||.|+++.|| ++|.+|..+ . +.|+...|+++|.++ T Consensus 329 sn~eq~~~~f~~~~L~Pl~~~ie-eln~~L~~~-----------~--~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 329 GTPDTAARVFGRNEIRPLQARFA-ELNDWLGEE-----------V--VRFDDYEIPPAPVAA 376 (376) T ss_pred ccHHHHHHHHHHHHHHHHHHHHH-HHHhhcccc-----------c--cccChhHhhcccccC Confidence 23478889999999999999998 588877321 1 567888999999988 No 93 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=1.6e-39 Score=233.28 Aligned_cols=275 Identities=12% Similarity=0.066 Sum_probs=185.6 Q ss_pred CCccccccccc--cccccCCccceeecccc-------------------hhhhhhHHHHHHHHHHHhhhccCceEEEEec Q lcl|Aclame:pro 1 MNLFGKVVSFS--RGKLNNDTQRVTAWQNE-------------------AVEYTSAFVTNIHNKIANEITKVEFNHVKYK 59 (378) Q Consensus 1 M~~f~~~~~~~--~~~~~~~~~~~~~~~~~-------------------~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~ 59 (378) |.=..+-.+.. +.........+ ++... .-.|+-|+-+.. +|+.+...|.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~---la~l~~~~~~h----- 71 (346) T protein:vir:10 1 MKKQLRKNLTQNDRLQPQAQTEIF-SFGDPIPVLDRADILNYLECSAMYEKWYNPPMSFDG---LAKSLRSSTHH----- 71 (346) T ss_pred CCcccCCCCCcccccccccCeEEE-ecCCcceecCchhHHHHHHHhhcCCceEecCCCHHH---HHHHHHhhhhc----- Confidence 44332211100 00001111111 11111 011111111222 33332222322 Q ss_pred ccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec------------- Q lcl|Aclame:pro 60 KSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA------------- 126 (378) Q Consensus 60 ~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~------------- 126 (378) ........|.+..++. +|||+||+.+|++ ++.+++++||||++++ ++..|+++.++|. T Consensus 72 ------~~~i~~k~n~l~~l~~-~Pn~~~t~~~f~~-~~~d~ll~Gnay~~i~-r~~~G~~~~L~pl~~~~v~~~~~~~~ 142 (346) T protein:vir:10 72 ------ESAIITKANILLSTCE-VDSRYLSRRDLSS-FVKDYLVFGNAYFEVV-RNRLGQVQRIESPLAKYVRKGLEAGQ 142 (346) T ss_pred ------chhhhhhhhhHHHHHh-CCCCCCCHHHHHH-HHHHHHhcCCeEEEEE-EcCCCcEEEEEEecCCceEEEEcCCe Confidence 1223345688999886 7999999999997 5678999999999986 7888999988873 Q ss_pred ---------CCeEEEeeeEEEEEcccc--CCccccchHHHHHHHHHH-----------HHhcCCcceeeeeC-CcCCHHH Q lcl|Aclame:pro 127 ---------DDKKEYKPEELVRLTSPF--YINEDTSILDNALASIQT-----------KLEQGKLRGLLKIN-AFLDIDN 183 (378) Q Consensus 127 ---------~~~~~~~~~dvih~r~~~--~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~-~~l~~~~ 183 (378) +..+.|+++||||+|.+. +...|++++..+++++.. +.|++.++|||..+ ..+++++ T Consensus 143 ~~~~~~~~~g~~~~~~~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l~~e~ 222 (346) T protein:vir:10 143 FYYVPQRFDHQEHEFAKGSIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQKQED 222 (346) T ss_pred EEEEEEccCCeEEEEecccEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHH Confidence 224568899999999753 445688888877776532 44678899999875 5688887 Q ss_pred HHHHHHHHHHHHHHhhccccccceeEec-----CCceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhc------c Q lcl|Aclame:pro 184 TQEYREKALTTIKNMQEGSSYNGLTPVD-----NKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL------G 251 (378) Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~------~ 251 (378) .++++++|++ ..++.|.++++++. .|+++++++.+++++++. ..++++++||++|||||.++| + T Consensus 223 ~~~i~~~~~~----~~g~~n~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~ 298 (346) T protein:vir:10 223 VENIRQQLKQ----SKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTG 298 (346) T ss_pred HHHHHHHHHH----hcCccccCceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCC Confidence 7766666654 34567888888884 478999999999999964 468899999999999999995 1 Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCH Q lcl|Aclame:pro 252 --TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) Q Consensus 252 --~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~ 311 (378) +..|++.+.|++++|.|+++.||+ ++.+|..+ -+.|+...|+++|. T Consensus 299 ~~s~~e~~~~~f~~~~l~P~~~~iee-~n~~L~~e-------------~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 299 GFGNVADAAEVFFITEIEPLQERLKE-FNQWLGQE-------------VIKFKPSKLLQRTQ 346 (346) T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcccc-------------eeeechhhhcccCC Confidence 234788899999999999999985 66666321 25688889999888 No 94 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=6.1e-39 Score=230.08 Aligned_cols=282 Identities=9% Similarity=0.049 Sum_probs=188.6 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhcc---CceEEEEecccccccccceeccCchHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITK---VEFNHVKYKKSDVGSDTLISMAGSDLD 77 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~---~p~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (378) |+ |.+.-....-..+.....++......+....+..|+....+..+. -|+.... .-+..+ .+.... T Consensus 1 m~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~-------La~l~~-~~~~h~ 69 (337) T protein:vir:78 1 MT---KRQQQPAQAAASSPRPSVVFSMPEAIDPTAWMTDYTGVFYNPYGEYYQPPIDRKG-------LAKVAR-ANAHHG 69 (337) T ss_pred CC---CcccCcccccccCceeEEEecCcccccCcchhHhhhhhhhccCcceecCCCCHHH-------HHHHhh-cchhhh Confidence 32 111110011111111122222222223333455555555443332 2321100 000001 111124 Q ss_pred HHHhccCCCCCCHH----HHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC-------------------CeEEEee Q lcl|Aclame:pro 78 EVLNWSPKGERNSM----DFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD-------------------DKKEYKP 134 (378) Q Consensus 78 ~lL~~~PN~~~s~~----~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~-------------------~~~~~~~ 134 (378) .+|..+||+.++++ ++++.++.+++++||||++++ |+..|+++.++|.. ..+.|++ T Consensus 70 ~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~-rn~~G~~~~L~pl~~~~v~~~~d~~~~~~~~~~~~~~~~~ 148 (337) T protein:vir:78 70 AILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKL-RNSFGQVVGLHPLSSVYLRRREDGCFVYLQQGKPNLIYRP 148 (337) T ss_pred hHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEE-ECCCCcEEEEEEeCCceeEeeeCCeEEEEEcCCceEEECC Confidence 56778999877654 688999999999999999987 67889999998742 3456789 Q ss_pred eEEEEEccc--cCCccccchHHHHHHHHH-----------HHHhcCCcceeeeeCC-cCCHHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 135 EELVRLTSP--FYINEDTSILDNALASIQ-----------TKLEQGKLRGLLKINA-FLDIDNTQEYREKALTTIKNMQE 200 (378) Q Consensus 135 ~dvih~r~~--~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~~-~l~~~~~~~~~~~~~~~~~~~~~ 200 (378) +||||+|.+ .++..|++++..+++++. .+.|++.++||+..++ .+++++.+++++.|++ ..+ T Consensus 149 ~eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~~~~lk~~~~~----~~G 224 (337) T protein:vir:78 149 DDVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDTEEEMKEMIAN----SKG 224 (337) T ss_pred ccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHHHHHHHHHHHH----hcC Confidence 999999965 345568889888887763 2457789999998764 6888887776666653 335 Q ss_pred cccccceeEe-----cCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc-------ccc--hHHHHHHHHHHH Q lcl|Aclame:pro 201 GSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL-------GTA--SQEQQIYFYNST 265 (378) Q Consensus 201 ~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~-------~~~--~e~~~~~f~~~~ 265 (378) ..|.++++++ ++|++|++++.+++++++ +..++++++||++|||||+++| +++ .|++.+.|+++| T Consensus 225 ~~n~~~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~ 304 (337) T protein:vir:78 225 VGNFRSMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDATYARNE 304 (337) T ss_pred cccccceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHHHHHHHH Confidence 5677778777 678999999999999996 4568999999999999999985 232 478889999999 Q ss_pred HHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhh Q lcl|Aclame:pro 266 IIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFK 307 (378) Q Consensus 266 l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~ 307 (378) |.|+++.||+++|.+|++..+ +.+|++....++ T Consensus 305 L~P~~~~ie~~~n~~ll~~~~---------~~~f~~~~~~~~ 337 (337) T protein:vir:78 305 VLPLCELVQDAINSAGLPRAL---------WVTFRETIGAAV 337 (337) T ss_pred HHHHHHHHHHHHhhhcCChhh---------ceeccccccccC Confidence 999999999999999987543 245666666655 No 95 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=6.1e-39 Score=230.08 Aligned_cols=262 Identities=14% Similarity=0.108 Sum_probs=179.0 Q ss_pred CCccc--ccccccccc--ccCCcccee----ecccchhhhh--------------hHHHHHHHHHHHhhhccCceEEEEe Q lcl|Aclame:pro 1 MNLFG--KVVSFSRGK--LNNDTQRVT----AWQNEAVEYT--------------SAFVTNIHNKIANEITKVEFNHVKY 58 (378) Q Consensus 1 M~~f~--~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~--------------~~~v~~~i~~ia~~ia~~p~~~~~~ 58 (378) +..-. +...|+-+. ..-+...++ .|.+. -+|+ ++...+||...++.++ T Consensus 20 ~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~-~~~~pp~~~~~la~~~~~~~~h~~~l~~k~n~l~--------- 89 (351) T protein:vir:78 20 AGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNG-EWFEPPVSFAGLAKSFRASTHHSSALFFKANVLA--------- 89 (351) T ss_pred hhhcccceeEEEEcCCceeecCcchhhhhhhhhccC-ceecCCCCHHHHHHHHhhhHhhhhhhhhhhhHHh--------- Confidence 11111 111111111 000000000 11111 1122 2222333322222221 Q ss_pred cccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec------------ Q lcl|Aclame:pro 59 KKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA------------ 126 (378) Q Consensus 59 ~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~------------ 126 (378) . ..+|||+||+++|++. +.++++.||||++++ ++..|++++++|. T Consensus 90 -------------------~--~~~Pn~~~t~~~f~~~-~~d~ll~Gnay~~~~-rn~~G~~~~L~pl~~~~v~~~~~~~ 146 (351) T protein:vir:78 90 -------------------S--TFRPHRWLSRHAFERW-ALDFLTFGNGYLERR-RNMVGGTLRLEPALAKYVRRKADFS 146 (351) T ss_pred -------------------h--cccCCCCCCHHHHHHH-HHHHHhcCCeEEEEE-ECCCCCEEEEEEecCcceEEeeeCC Confidence 1 2479999999999865 578899999999987 6888999999874 Q ss_pred --------CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHH-----------HHHhcCCcceeeeeC-CcCCHHHH Q lcl|Aclame:pro 127 --------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQ-----------TKLEQGKLRGLLKIN-AFLDIDNT 184 (378) Q Consensus 127 --------~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~-~~l~~~~~ 184 (378) +..+.|+++||||||++ .+...|++++..+++++. .+.|++.++|||..+ ..+++++. T Consensus 147 ~~~~~~~~~~~~~~~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl~~~~~~ls~e~~ 226 (351) T protein:vir:78 147 GFVYVNGWQERHEFAPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDV 226 (351) T ss_pred eEEEEecCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHH Confidence 22456889999999965 345567888888877663 245678899999875 47898887 Q ss_pred HHHHHHHHHHHHHhhccccccceeEe-----cCCceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhc------c- Q lcl|Aclame:pro 185 QEYREKALTTIKNMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL------G- 251 (378) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~------~- 251 (378) ++++++|++ ..+..|.++++++ ++|++|++++.+++++++. ..++++++||++|||||.++| + T Consensus 227 ~~lr~~~~~----~~G~~N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~ 302 (351) T protein:vir:78 227 DNMRDALKN----AKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGG 302 (351) T ss_pred HHHHHHHHH----hcCcccccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCC Confidence 777777654 3455788888887 5789999999999999974 468899999999999999985 1 Q ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHH Q lcl|Aclame:pro 252 -TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKE 313 (378) Q Consensus 252 -~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~ 313 (378) +..|++.+.|++++|.|+++.||+ ++.+|..+ + +.|+...|+++|.++ T Consensus 303 ~sn~e~~~~~f~~~~l~P~~~~iee-~n~~l~~~-----------~--~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 303 FGTPDTAARVFGRNEIRPLQARFAE-LNDWLGDE-----------V--VRFDDYEIPPAPVAA 351 (351) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcc-----------c--eecChhhhccccccC Confidence 234788899999999999999985 66666321 2 668888999999988 No 96 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=8.9e-39 Score=229.20 Aligned_cols=274 Identities=13% Similarity=0.077 Sum_probs=178.2 Q ss_pred CCccc--cccccccccc--cCCcccee----ecccchhhhhhHHHHHHHHHHHhhh--ccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFG--KVVSFSRGKL--NNDTQRVT----AWQNEAVEYTSAFVTNIHNKIANEI--TKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~--~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~v~~~i~~ia~~i--a~~p~~~~~~~~~~~~~~~~~~ 70 (378) +..-. +...|+-+.+ .-+...++ .|.+. -+|+-|+-+..+..+.+.- .+.+++. T Consensus 20 ~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~-~~~~pp~~~~~la~~~~~~~~h~~~l~~--------------- 83 (351) T protein:vir:79 20 AGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNG-EWFEPPVSFAGLAKSFRASTHHSSALFF--------------- 83 (351) T ss_pred hhhcccceeEEEEcCCceeecCcchhhhhhhhhhcC-ceecCCCCHHHHHHHHhhhHhhhhhhhh--------------- Confidence 11111 1111111110 00000000 11111 1122221111111111110 0101111 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------------CeE Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------------DKK 130 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------------~~~ 130 (378) ..+.|.. ..+|||+||+++|++ ++.+++++||||++++ ++..|++++++|.. ..+ T Consensus 84 -k~n~l~~--~~~Pnp~~t~~~f~~-~v~d~ll~Gnay~~~~-r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~~~~g~~~ 158 (351) T protein:vir:79 84 -KANVLAS--TFRPHRWLSRHAFER-WALDFLTFGNGYLERR-RNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERH 158 (351) T ss_pred -hhhHHhh--cccCCCCCCHHHHHH-HHHHHHhcCCeEEEEE-ECCCCCEEEEEEeCCcceeeeecCCeEEEEecCceEE Confidence 0011111 247999999999975 5679999999999987 68889999998741 235 Q ss_pred EEeeeEEEEEccc--cCCccccchHHHHHHHHH-----------HHHhcCCcceeeeeC-CcCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 131 EYKPEELVRLTSP--FYINEDTSILDNALASIQ-----------TKLEQGKLRGLLKIN-AFLDIDNTQEYREKALTTIK 196 (378) Q Consensus 131 ~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~-~~l~~~~~~~~~~~~~~~~~ 196 (378) .|+++||||+|.+ .+...|++++..+++++. .+.|++.++|||..+ ..+++++.++++++|++ T Consensus 159 ~~~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~--- 235 (351) T protein:vir:79 159 EFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKN--- 235 (351) T ss_pred EEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHH--- Confidence 6889999999965 345568888888877763 245677899999875 46888887777776654 Q ss_pred HhhccccccceeEe-----cCCceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhc----c----cchHHHHHHHH Q lcl|Aclame:pro 197 NMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL----G----TASQEQQIYFY 262 (378) Q Consensus 197 ~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~----~----~~~e~~~~~f~ 262 (378) ..+..|.++++++ ++|++|++++.+++++++. ..++++++||++|||||.++| + ...|++.+.|+ T Consensus 236 -~~G~~N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~ 314 (351) T protein:vir:79 236 -AKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFG 314 (351) T ss_pred -hcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHH Confidence 3355778888887 5789999999999999964 468999999999999999985 1 23478899999 Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHH Q lcl|Aclame:pro 263 NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKE 313 (378) Q Consensus 263 ~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~ 313 (378) ++||.|+++.||+ +|.+|-- .. +.|+...|+++|.++ T Consensus 315 ~~~l~Pl~~~ie~-ln~~lg~-----------~~--~~F~~~~llr~d~~a 351 (351) T protein:vir:79 315 RNEIRPLQARFAE-LNDWLGD-----------EV--VTFDDYEIPPAPVAA 351 (351) T ss_pred HHHHHHHHHHHHH-HHhhcCc-----------ce--eeeChhhhccccccC Confidence 9999999999985 7776621 11 567888999999988 No 97 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=7.9e-39 Score=229.48 Aligned_cols=269 Identities=13% Similarity=0.066 Sum_probs=180.3 Q ss_pred CCccccccccccc-----------cccCCcccee----------ecccchhhhhhHHHHHHHHHHHhhhc--cCceEEEE Q lcl|Aclame:pro 1 MNLFGKVVSFSRG-----------KLNNDTQRVT----------AWQNEAVEYTSAFVTNIHNKIANEIT--KVEFNHVK 57 (378) Q Consensus 1 M~~f~~~~~~~~~-----------~~~~~~~~~~----------~~~~~~~~~~~~~v~~~i~~ia~~ia--~~p~~~~~ 57 (378) |+ ++....... +.-+++..+. .+.+ .-+|+.|+-+.++..+.++-+ +.+++. T Consensus 1 m~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~pp~~~~~la~l~~a~~~h~s~i~~-- 75 (340) T protein:vir:98 1 MS--KRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISN-GKWYEPPVSFSGLAKSLRSAVHHSSPIYV-- 75 (340) T ss_pred CC--CCCCCccccccccCccceeEEEcCCceeecCcchhhhhhhhhhc-CceecCCCCHHHHHHHHHhccccchhhhh-- Confidence 54 322111100 0001111110 1111 112333333444333322221 111211 Q ss_pred ecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec----------- Q lcl|Aclame:pro 58 YKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA----------- 126 (378) Q Consensus 58 ~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~----------- 126 (378) ..+.+... .+|||+||+.+|++ ++.+++++||||++++ ++..|+++.++|. T Consensus 76 --------------k~n~l~~~--~~Pn~~lt~~~f~~-~~~d~ll~Gnay~~~~-rn~~G~~~~L~pl~~~~vr~~~~~ 137 (340) T protein:vir:98 76 --------------KRNVLAST--YIPHPLLSRQDFSR-FALDYLVFGNAFLEQR-HSVTGQLIKLLTSPAKYTRRGVDD 137 (340) T ss_pred --------------hhhHHhhc--cCCCCCCCHHHHHH-HHHHHHhcCCeEEEEE-ECCCCcEEEEEEeCCceEEEcccC Confidence 11223222 37999999999976 5579999999999987 7888999998873 Q ss_pred ---------CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHH-----------HHHhcCCcceeeeeC-CcCCHHH Q lcl|Aclame:pro 127 ---------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQ-----------TKLEQGKLRGLLKIN-AFLDIDN 183 (378) Q Consensus 127 ---------~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~-~~l~~~~ 183 (378) +..+.|+++||||||++ .+...|++++..+++++. .+.|++.++|||..+ ..+++++ T Consensus 138 ~~~~~~~~~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~~~ls~e~ 217 (340) T protein:vir:98 138 SVFWFVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATD 217 (340) T ss_pred cEEEEEecCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHH Confidence 22356889999999963 455668889888777663 244678899999876 4688888 Q ss_pred HHHHHHHHHHHHHHhhccccccceeEe-----cCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc------c Q lcl|Aclame:pro 184 TQEYREKALTTIKNMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL------G 251 (378) Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~------~ 251 (378) .++++++|++ ..+..|.++++++ ++|++|++++.+++++++ +..++++++||++|||||.++| + T Consensus 218 ~~~lk~~~~~----~~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~ 293 (340) T protein:vir:98 218 VESLRDAMRN----SKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIG 293 (340) T ss_pred HHHHHHHHHH----hcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCC Confidence 7776666653 3445677788887 679999999999999996 4468899999999999999995 1 Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcC Q lcl|Aclame:pro 252 --TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) Q Consensus 252 --~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d 310 (378) ...|++.+.|+++||.|+++.||+ +|.+|..+ -+.|+...++++| T Consensus 294 ~~sn~e~~~~~f~~~~l~Pl~~~iee-~n~~L~~e-------------~~rF~~~~l~~~d 340 (340) T protein:vir:98 294 SLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME-------------VIRFKEYTLDNPE 340 (340) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHhccccc-------------ccccCccccccCC Confidence 234788999999999999999985 88887432 1567777889888 No 98 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=1.4e-38 Score=228.09 Aligned_cols=271 Identities=13% Similarity=0.063 Sum_probs=175.6 Q ss_pred CCccccccccc------------cccccCCcccee----------ecccchhhhhhHHHHHHHHHHHhh--hccCceEEE Q lcl|Aclame:pro 1 MNLFGKVVSFS------------RGKLNNDTQRVT----------AWQNEAVEYTSAFVTNIHNKIANE--ITKVEFNHV 56 (378) Q Consensus 1 M~~f~~~~~~~------------~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~i~~ia~~--ia~~p~~~~ 56 (378) |.==.+...-. ..+.-+++..+. .+.+ .-+|+-|+-+.++..+.++ .-+.+++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~-~~~~~pp~~~~~la~~~~a~~~h~s~i~~k 79 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISN-GRWYEPPVSFTGLAKSLRAAVHHSSPIYVK 79 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhc-CccccCCCCHHHHHHHHhhhhhhCccceeh Confidence 33222111000 000001111111 1111 1223333333333333222 122233321 Q ss_pred EecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec---------- Q lcl|Aclame:pro 57 KYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA---------- 126 (378) Q Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~---------- 126 (378) .+.|... .+|||+||+.+| +.++.+++++||||++++ |+..|+++.++|. T Consensus 80 ----------------~n~l~~~--~~Pnp~~t~~~f-~~~~~d~ll~Gnay~~~~-rn~~G~~~~L~pl~~~~v~~~~~ 139 (344) T protein:vir:56 80 ----------------RNILAST--FIPHPWLSQQDF-SRFVLDFLVFGNAFLEKR-YSTTGKVIRLETSPAKYTRRGVE 139 (344) T ss_pred ----------------hhhHHhh--cCCCCCCCHHHH-HHHHHHHHhcCCeEEEEE-ECCCCcEEEEEEeCCceeEEeec Confidence 1223332 479999999999 567889999999999986 7889999999874 Q ss_pred ----------CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHH-----------HHHhcCCcceeeeeC-CcCCHH Q lcl|Aclame:pro 127 ----------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQ-----------TKLEQGKLRGLLKIN-AFLDID 182 (378) Q Consensus 127 ----------~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~-~~l~~~ 182 (378) +..+.|+++||||+|.+ .++..|++++..+++++. .+.|++.++|||.++ ..++++ T Consensus 140 ~~~~~~~~~~g~~~~~~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls~e 219 (344) T protein:vir:56 140 EDVYWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) T ss_pred CCEEEEEecCCeEEEEcCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHH Confidence 12346889999999964 455668899888877653 245678899999876 468888 Q ss_pred HHHHHHHHHHHHHHHhhccccccceeEe------cCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----- Q lcl|Aclame:pro 183 NTQEYREKALTTIKNMQEGSSYNGLTPV------DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----- 250 (378) Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----- 250 (378) +.++++++|++ . .|.++++++++ ++|++|++++.+++++++ +..++++++||++|||||.++| T Consensus 220 ~~~~lk~~~~~----~-~g~~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~ 294 (344) T protein:vir:56 220 DIEMLRENMVK----S-KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN 294 (344) T ss_pred HHHHHHHHHHH----h-cCCCCccceEEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCC Confidence 77666666654 3 34577888888 579999999999999996 5568999999999999999996 Q ss_pred -cc--chHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCH Q lcl|Aclame:pro 251 -GT--ASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) Q Consensus 251 -~~--~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~ 311 (378) ++ ..|++.+.|+++||.|+++.||+ +|.+|..+- +.|+.-.+...|. T Consensus 295 t~~~~n~eq~~~~f~~~tL~Pl~~~ie~-~n~~l~~~~-------------~~F~~y~l~~~~~ 344 (344) T protein:vir:56 295 VGSLGDIEKVAKVFVRNELIPLQDRIRE-INGWIGQEV-------------IRFKNYSLDTDNG 344 (344) T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHH-HHhhhcccc-------------ccCCCccccccCC Confidence 11 24788999999999999999985 777875321 2233333333333 No 99 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=3.8e-38 Score=225.71 Aligned_cols=269 Identities=13% Similarity=0.050 Sum_probs=175.3 Q ss_pred ccccccccccc--------------cccCCcccee----------ecccchhhhhhHHHHHHHHHHH--hhhccCceEEE Q lcl|Aclame:pro 3 LFGKVVSFSRG--------------KLNNDTQRVT----------AWQNEAVEYTSAFVTNIHNKIA--NEITKVEFNHV 56 (378) Q Consensus 3 ~f~~~~~~~~~--------------~~~~~~~~~~----------~~~~~~~~~~~~~v~~~i~~ia--~~ia~~p~~~~ 56 (378) +..+.+....- +.-+++..+. .+. ..-+|+-|+-+.++..+. +...+.+++.. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~-~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k 79 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECIS-NGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhh-cCccccCCCCHHHHHHHHHhhhhhccchhhh Confidence 44433221100 0001111110 000 111222222222222221 11122222221 Q ss_pred EecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------- Q lcl|Aclame:pro 57 KYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------- 127 (378) Q Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------- 127 (378) .+.|... .+|||+||+.+| +.++.+++++||||++++ ++..|++++++|.. T Consensus 80 ----------------~n~l~~~--~~Pn~~~t~~~f-~~~~~d~ll~Gnay~~i~-rn~~G~~~~L~~l~~~~vr~~~~ 139 (344) T protein:vir:60 80 ----------------RNILAST--FIPHPWLSQQDF-SRFVLDFLVFGNAFLEKR-YSTTGKVIRLETSPAKYTRRGVE 139 (344) T ss_pred ----------------hhHHHhh--ccCCCCCCHHHH-HHHHHHHHhcCCeEEEEE-ECCCCcEEEEEEcCcceEEEeec Confidence 1223332 479999999999 567899999999999986 78889999988742 Q ss_pred -----------CeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeC-CcCCHH Q lcl|Aclame:pro 128 -----------DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKIN-AFLDID 182 (378) Q Consensus 128 -----------~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~-~~l~~~ 182 (378) ..+.|+++||||+|++ .+...|++++..+++++.. +.|++.++|||..+ ..++++ T Consensus 140 ~~~~~~v~~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls~e 219 (344) T protein:vir:60 140 EDVYWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) T ss_pred CCeEEEEccCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHH Confidence 2346889999999964 4556689999888877632 45678899999875 468888 Q ss_pred HHHHHHHHHHHHHHHhhccccccceeEe------cCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----c Q lcl|Aclame:pro 183 NTQEYREKALTTIKNMQEGSSYNGLTPV------DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----G 251 (378) Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----~ 251 (378) +.++++++|++. . |.++++.+++ ++|++|++++.+++++++ +..++++++||++|||||.+++ + T Consensus 220 ~~~~ik~~~~~~----~-g~~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~ 294 (344) T protein:vir:60 220 DIEMLRENMVKS----K-GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN 294 (344) T ss_pred HHHHHHHHHHHh----c-CCCCCcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCC Confidence 877666666553 2 3466777776 579999999999999996 4568999999999999999995 1 Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCH Q lcl|Aclame:pro 252 ----TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) Q Consensus 252 ----~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~ 311 (378) ...|++.+.|++++|.|+++.|| ++|.+|-.+ -+.|+.-.+...|. T Consensus 295 t~~~~n~e~~~~~f~~~~L~Pl~~~~e-~ln~~lg~~-------------~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 295 VGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQE-------------VIRFKNYSLDTDNG 344 (344) T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCc-------------ccccCccccCCCCC Confidence 12478899999999999999998 588887321 13344445555555 No 100 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=1.7e-38 Score=227.72 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=143.8 Q ss_pred CCccccccccccccc-cCCcc------ceee----cccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL-NNDTQ------RVTA----WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 1 M~~f~~~~~~~~~~~-~~~~~------~~~~----~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) ||||.+..+...... ..... .+.. ..+...++.+++|++||++||++||++|+++|+..+ T Consensus 1 MglF~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~--------- 71 (251) T protein:vir:46 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPSFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQ--------- 71 (251) T ss_pred CCccccccccccCCCccchhhhhhhhccccCcCcceechhhhhccHHHHHHHHHHHHhHhhCceEEeeCcc--------- Confidence 999987643321111 10000 0000 012334567889999999999999999999987432 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC---------------------- Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD---------------------- 127 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~---------------------- 127 (378) ...+|++++||+.+||++||+++||+.++.+++++||||++++ ++..|++.+++|.. T Consensus 72 ~~~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~-r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~ 150 (251) T protein:vir:46 72 INYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEIT-RDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRID 150 (251) T ss_pred ccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEE-ECCCCcEEEEEEECCceEEEEECCCCcEEEEEEEec Confidence 2357999999999999999999999999999999999999987 67789998887631 Q ss_pred -----CeEEEeeeEEEEEcc-ccCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeCCcCCH-HHHHHHHH Q lcl|Aclame:pro 128 -----DKKEYKPEELVRLTS-PFYINEDTSILDNALASIQT-----------KLEQGKLRGLLKINAFLDI-DNTQEYRE 189 (378) Q Consensus 128 -----~~~~~~~~dvih~r~-~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~~~l~~-~~~~~~~~ 189 (378) ..+.|+++||||||. +.++..|.||+..+..++.. +.++++|+|+|++++.+++ ++.+++++ T Consensus 151 ~~~~g~~~~~~~~diiH~r~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~~~~~~ 230 (251) T protein:vir:46 151 SNGNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRARE 230 (251) T ss_pred cCCcceeEEECCccEEEecCcCCCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHHHHHHH Confidence 124688899999996 35566789999988877643 3467899999999998854 44455566 Q ss_pred HHHHHHHHhhcc-ccccceeEecCC Q lcl|Aclame:pro 190 KALTTIKNMQEG-SSYNGLTPVDNK 213 (378) Q Consensus 190 ~~~~~~~~~~~~-~~~~~~~~l~~g 213 (378) +|++.+ +| .|+|++++..+- T Consensus 231 ~~~~~~----~g~~n~g~~~~gm~~ 251 (251) T protein:vir:46 231 EFPKVL----VELNKLGKLSYSMNQ 251 (251) T ss_pred HHHHHh----cCcccccccccccCC Confidence 665554 44 567765553221 No 101 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=9.1e-38 Score=223.66 Aligned_cols=270 Identities=11% Similarity=0.096 Sum_probs=172.7 Q ss_pred CCcc-------------ccccc--cccccccCCcccee----ecccchhhhhhHHHHHHHHHHHh--hhccCceEEEEec Q lcl|Aclame:pro 1 MNLF-------------GKVVS--FSRGKLNNDTQRVT----AWQNEAVEYTSAFVTNIHNKIAN--EITKVEFNHVKYK 59 (378) Q Consensus 1 M~~f-------------~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~i~~ia~--~ia~~p~~~~~~~ 59 (378) +.-. .+... |+.-....+...++ .|.+ .-.|+.|+-+.++..+.+ ...+.++.. T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~~~-~~~~~pp~~~~~la~~~~~~~~h~~~l~~---- 86 (350) T protein:vir:11 12 PVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWPN-GRWYEPPLSMEGLAKSVGSSVYLQSGLKF---- 86 (350) T ss_pred ccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHhhc-CccccCCCCHHHHHHHHhhhhhhccchhh---- Confidence 1100 01111 11111111111110 1111 112333322333222111 111112211 Q ss_pred ccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeec------------- Q lcl|Aclame:pro 60 KSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA------------- 126 (378) Q Consensus 60 ~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~------------- 126 (378) ..+.|.. ..+|||+||+++|++ ++.+++++||||++++ ++..|+++.++|. T Consensus 87 ------------k~n~l~~--~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~~~-rn~~G~~~~L~~l~~~~vr~~~~~~~ 150 (350) T protein:vir:11 87 ------------KRNMLAK--TFIPHRLLSRATFEQ-FSLDWLTFGSAYLEQP-RSRLGTRMPLQAPLAKYMRRGTDLET 150 (350) T ss_pred ------------hhhhhhh--cccCCCCCCHHHHHH-HHHHHHhcCCeEEEEE-EcCCCCEEEEEEeCCceeEeeecCCe Confidence 1111222 248999999999987 5679999999999987 7888999998874 Q ss_pred -------CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHH-----------HHHhcCCcceeeeeC-CcCCHHHHH Q lcl|Aclame:pro 127 -------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQ-----------TKLEQGKLRGLLKIN-AFLDIDNTQ 185 (378) Q Consensus 127 -------~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~-~~l~~~~~~ 185 (378) +..+.|+++||||||.+ .+...|++++..+++++. .+.|++.++|||..+ ..+++++.+ T Consensus 151 ~~~~~~~~~~~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~e~~~ 230 (350) T protein:vir:11 151 FYQVRSWKDEHEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNEEDID 230 (350) T ss_pred EEEEeeCCeEEEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHH Confidence 23457889999999964 444568889888877663 245778999999886 468888877 Q ss_pred HHHHHHHHHHHHhhccccccceeEe-----cCCceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhc------ccc Q lcl|Aclame:pro 186 EYREKALTTIKNMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL------GTA 253 (378) Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~------~~~ 253 (378) ++++.|++ ..+..|.++++++ ++|++|++++.+++++++. ..++++++||++|||||.++| +++ T Consensus 231 ~l~~~~~~----~~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~ 306 (350) T protein:vir:11 231 ALRTALKT----AKGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGF 306 (350) T ss_pred HHHHHHHH----hcCccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCc Confidence 76666654 3456788888887 4689999999999999964 468999999999999999996 222 Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhh Q lcl|Aclame:pro 254 --SQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLF 306 (378) Q Consensus 254 --~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l 306 (378) .|++.+.|+++||.|+++.||+ +|.+|..+- ..+. .|+..+| T Consensus 307 sn~e~~~~~f~~~~L~P~~~~ie~-ln~~l~~~~--------~~F~--~~~~~~l 350 (350) T protein:vir:11 307 GSISDAAAVWASLELAPMQTRLQQ-VNEMIGEEV--------VRFA--QFDAPGL 350 (350) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHhhcCccc--------cccC--cccccCC Confidence 3788899999999999999985 888875431 1112 2444455 No 102 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=8.7e-38 Score=223.76 Aligned_cols=271 Identities=14% Similarity=0.057 Sum_probs=174.7 Q ss_pred CCcccccccccc----------c--cccCCcccee----------ecccchhhhhhHHHHHHHHHH--HhhhccCceEEE Q lcl|Aclame:pro 1 MNLFGKVVSFSR----------G--KLNNDTQRVT----------AWQNEAVEYTSAFVTNIHNKI--ANEITKVEFNHV 56 (378) Q Consensus 1 M~~f~~~~~~~~----------~--~~~~~~~~~~----------~~~~~~~~~~~~~v~~~i~~i--a~~ia~~p~~~~ 56 (378) |.==.+...-.. . +.-+++..+. .+. ..-+|+-|+-+.++..+ |+...+.+++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~-~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k 79 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECIS-NGRWYEPPVSFTGLAKSLRAAVHHSSPIYVK 79 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhh-cCceecCCCCHHHHHHHHhhhhhhCccceeh Confidence 332211110000 0 0001111110 111 11222223223333222 222222333321 Q ss_pred EecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------- Q lcl|Aclame:pro 57 KYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------- 127 (378) Q Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------- 127 (378) .+-+... .+|||+||+.+| +.++.+++++||||++++ ++..|+++.++|.. T Consensus 80 ----------------~n~l~~~--~~Pn~~lt~~~f-~~~~~d~ll~Gnay~~i~-rn~~G~~~~L~pl~~~~vr~~~~ 139 (344) T protein:vir:20 80 ----------------RNILAST--FIPHPWLSQQDF-SRFVLDFLVFGNAFLEKR-YSTTGKVIRLETSPAKYTRRGVE 139 (344) T ss_pred ----------------hhhHHHh--ccCCCCCCHHHH-HHHHHHHHhcCCeEEEEE-ECCCCcEEEEEEcCCceeEeeec Confidence 1223332 479999999999 567889999999999986 78889999998742 Q ss_pred -----------CeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCcceeeeeC-CcCCHH Q lcl|Aclame:pro 128 -----------DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKLRGLLKIN-AFLDID 182 (378) Q Consensus 128 -----------~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gil~~~-~~l~~~ 182 (378) ..+.|+++||||+|++ .++..|++++..+++++.. +.|++.++|||..+ ..++++ T Consensus 140 ~~~~~~~~~~~~~~~~~~~eIiHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~~e 219 (344) T protein:vir:20 140 EDVYWWVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRN 219 (344) T ss_pred CCEEEEEccCCeEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHH Confidence 2356889999999964 4455688898888776632 45778899999875 578888 Q ss_pred HHHHHHHHHHHHHHHhhccccccceeEe------cCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhc----- Q lcl|Aclame:pro 183 NTQEYREKALTTIKNMQEGSSYNGLTPV------DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL----- 250 (378) Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~----- 250 (378) +.++++++|++. .+.++++.+++ .+|++|++++.++.++++ +..++++++||++|||||.++| T Consensus 220 ~~~~ik~~~~~~-----~g~~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~ 294 (344) T protein:vir:20 220 DIEMLRENMVKS-----KGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPEN 294 (344) T ss_pred HHHHHHHHHHHh-----cCCCCccceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCC Confidence 877666666542 23466777776 469999999999999996 4568999999999999999995 Q ss_pred -c--cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCH Q lcl|Aclame:pro 251 -G--TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) Q Consensus 251 -~--~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~ 311 (378) + ...|++.+.|++++|.|+++.|| +++.+|-.+ .+.|+...+...|. T Consensus 295 t~~~~n~e~~~~~f~~~~l~P~~~~~e-~in~~lg~~-------------~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 295 VGSLGDIEKVAKVFVRNELIPLQDRIR-EINGWLGQE-------------VIRFKNYSLDTDND 344 (344) T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCc-------------ccccCccccccCCC Confidence 1 12478899999999999999998 578777321 13344445555554 No 103 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=3.7e-37 Score=220.34 Aligned_cols=273 Identities=11% Similarity=0.068 Sum_probs=175.2 Q ss_pred CCccccccc-------------cccccccC----CccceeecccchhhhhhHHHHHHHHHH--HhhhccCceEEEEeccc Q lcl|Aclame:pro 1 MNLFGKVVS-------------FSRGKLNN----DTQRVTAWQNEAVEYTSAFVTNIHNKI--ANEITKVEFNHVKYKKS 61 (378) Q Consensus 1 M~~f~~~~~-------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~i~~i--a~~ia~~p~~~~~~~~~ 61 (378) |+=..+.-+ |+-+.+.. +...+.. .+..-.|+-|+-+.....+ |+...+-++.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~------ 73 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPINDRTFSLSEITASPALDYVGIGF-DENYNCYLPPVNRHALAKLPHQNAQHGGILHS------ 73 (345) T ss_pred CCccccccchhhhcCCCceEEEeecCCcccchhhcccceee-ecCCccccCCCCHHHHHHHhhcchhhcchhhh------ Confidence 433322111 11111110 0000000 0111233333322222222 11111112211 Q ss_pred ccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC-------------- Q lcl|Aclame:pro 62 DVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD-------------- 127 (378) Q Consensus 62 ~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~-------------- 127 (378) ..+-+. .+.+|||+||+.+|++. +.++++.||||++++ |+..|+++.++|.. T Consensus 74 ----------k~n~l~--~~~~Pn~~~t~~~f~~~-v~d~ll~Gnay~~i~-rn~~G~~~~L~pl~~~~vr~~~d~~~~~ 139 (345) T protein:vir:37 74 ----------RANMVS--ATYEGGKALSKMEMRAL-CLNLIQFGDVGLLKV-RNGFGQVVRLVPLSSLYLRVHKDGGYSY 139 (345) T ss_pred ----------hhhHHh--hccCCCCCCCHHHHHHH-HHHHHhcCCeEEEEE-ECCCCCEEEEEEecCceeEEeecCCeeE Confidence 112222 23489999999999765 578999999999987 78889999988731 Q ss_pred -----------CeEEEeeeEEEEEccc--cCCccccchHHHHHHHHH-----------HHHhcCCcceeeeeC-CcCCHH Q lcl|Aclame:pro 128 -----------DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQ-----------TKLEQGKLRGLLKIN-AFLDID 182 (378) Q Consensus 128 -----------~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~-~~l~~~ 182 (378) ..+.|+++||||||.+ .+...|++++..+++++. .+.|++.++||+..+ ..++++ T Consensus 140 ~~~~~~~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t~~~l~~e 219 (345) T protein:vir:37 140 LMKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEE 219 (345) T ss_pred EEeeeeeccCceEEEEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHH Confidence 1245788999999964 345568888887777653 245678899999865 478888 Q ss_pred HHHHHHHHHHHHHHHhhccccccceeEe-----cCCceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhc------ Q lcl|Aclame:pro 183 NTQEYREKALTTIKNMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL------ 250 (378) Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~------ 250 (378) +.++++++|++. .++.|.+.++++ ++|++|++++.+++++++. ..++++++||++|||||.++| T Consensus 220 ~~~~lk~~~~~~----~g~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t 295 (345) T protein:vir:37 220 MEEEIARKISES----KGVGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNT 295 (345) T ss_pred HHHHHHHHHHHh----cCccccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhccccCCC Confidence 777666666553 344454445554 5689999999999999964 468899999999999999985 Q ss_pred c--cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhh Q lcl|Aclame:pro 251 G--TASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKF 308 (378) Q Consensus 251 ~--~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~ 308 (378) + ...|++.+.|+++||.|++++||+++|+.+-. . ....+.|+...|++ T Consensus 296 ~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~~e~--------~--~~~~i~F~~~~l~k 345 (345) T protein:vir:37 296 GGLGDPLKYREVYHYDEVMPLQEIIAETINQDPEI--------K--NLLKIKFREQNFAK 345 (345) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--------C--CcceEEECchhhcC Confidence 1 22478899999999999999999999974311 1 12346788888887 No 104 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=2.7e-36 Score=215.58 Aligned_cols=274 Identities=11% Similarity=0.049 Sum_probs=177.8 Q ss_pred CCcccccccccc---------ccccCCccce--e----ec-ccchhhhhhHHHHHHHHHHHhh--hccCceEEEEecccc Q lcl|Aclame:pro 1 MNLFGKVVSFSR---------GKLNNDTQRV--T----AW-QNEAVEYTSAFVTNIHNKIANE--ITKVEFNHVKYKKSD 62 (378) Q Consensus 1 M~~f~~~~~~~~---------~~~~~~~~~~--~----~~-~~~~~~~~~~~v~~~i~~ia~~--ia~~p~~~~~~~~~~ 62 (378) |+=..+...-.. .+.-+++..+ + .| ...+-+|+.|+-+.++..+.+. -.+-.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~------- 73 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPINDRTFSLNEISASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHS------- 73 (345) T ss_pred CCCCccccchhhcccCcceeEEeecCCcccccchhhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceee------- Confidence 444332211000 0000111111 1 00 0112234444333333333222 11111111 Q ss_pred cccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecC--------------- Q lcl|Aclame:pro 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD--------------- 127 (378) Q Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~--------------- 127 (378) ..+-+... .+|||+||+++|++. +.++++.||||++++ |+..|+++.++|.. T Consensus 74 ---------k~n~l~~~--~~Pn~~lt~~~f~~~-~~d~ll~Gnay~~~~-rn~~G~~~~L~pl~~~~vr~~~d~~~~~~ 140 (345) T protein:vir:37 74 ---------RANMVSSL--YEGGKALSRMDMRAL-CLNLIQFGDVGLLKV-RNGFGQVVRLVPLSSLYLRVRKDGGYSYL 140 (345) T ss_pred ---------echHHHhh--ccCCCCCCHHHHHHH-HHHHHhcCCeEEEEE-EcCCCcEEEEEEEcCceeEEEEeCCeeEE Confidence 11233332 479999999999865 578999999999986 78889999988732 Q ss_pred ----------CeEEEeeeEEEEEccc--cCCccccchHHHHHHHHH-----------HHHhcCCcceeeeeC-CcCCHHH Q lcl|Aclame:pro 128 ----------DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQ-----------TKLEQGKLRGLLKIN-AFLDIDN 183 (378) Q Consensus 128 ----------~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~-~~l~~~~ 183 (378) ..+.|+++||||+|++ .+...|++++..+++++. .+.|++.++|||..+ ..+++++ T Consensus 141 ~~~~~~~~~g~~~~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d~~l~~e~ 220 (345) T protein:vir:37 141 MKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEM 220 (345) T ss_pred EEEeEecCCceEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecCCCCCHHH Confidence 1245788999999964 445568888888777653 244677899999875 5688887 Q ss_pred HHHHHHHHHHHHHHhhccccccceeEe-----cCCceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhc------c Q lcl|Aclame:pro 184 TQEYREKALTTIKNMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL------G 251 (378) Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~------~ 251 (378) .++++++|++ ..+..|.++++++ ++|++|++++.+++++++. ..++++++||++|||||.++| + T Consensus 221 ~~~lk~~~~~----~~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~ 296 (345) T protein:vir:37 221 EEEIARKISE----SKGVGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTG 296 (345) T ss_pred HHHHHHHHHH----hcCcccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCC Confidence 7766666654 3445677777776 6899999999999999964 468999999999999999985 1 Q ss_pred c--chHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhh Q lcl|Aclame:pro 252 T--ASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKF 308 (378) Q Consensus 252 ~--~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~ 308 (378) + ..|++.+.|+++||.|++++||+++|+.+..+ .. ..+.|+...|.+ T Consensus 297 ~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~~~~~~--------~~--~~i~F~~~~L~~ 345 (345) T protein:vir:37 297 GLGDPLKYREVYHYDEVMPLQEIIAETINQDPEIK--------NL--LKIKFREQNFAK 345 (345) T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC--------Cc--ceEEecchhhcC Confidence 2 24788999999999999999999999754211 11 235666555554 No 105 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=7.9e-33 Score=196.57 Aligned_cols=185 Identities=6% Similarity=0.004 Sum_probs=139.4 Q ss_pred EEeCCCceEEEEeec------CCeEEEeeeEEEEEccc--cCCccccchHHHHHHHHHH-----------HHhcCCccee Q lcl|Aclame:pro 112 VFDDNTGELLDLLFA------DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQT-----------KLEQGKLRGL 172 (378) Q Consensus 112 ~~~~~~g~~~~~~~~------~~~~~~~~~dvih~r~~--~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~gi 172 (378) +++...|.+.+.+.. +..+.|+++||||||++ .++..|++|+..++.++.. +.|+++|+|| T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p~gi 80 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHMGFI 80 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE Confidence 445667777776543 45678999999999964 4566789999888777643 3478899999 Q ss_pred eeeCC-cCCHHHHHHHHHHHHHHHHHhhccccccceeEe-----cCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 173 LKINA-FLDIDNTQEYREKALTTIKNMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMN 245 (378) Q Consensus 173 l~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVP 245 (378) |++++ .+++++.+++++.|++ ..++.|+++++++ ++|++|++++++++++++ +..++++++||++|||| T Consensus 81 l~~~~~~l~~e~~~~~~~~~~~----~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVP 156 (219) T protein:vir:98 81 LYSTDPDMTEEMEDEIAERIRD----SKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFP 156 (219) T ss_pred EEeCCCCCCHHHHHHHHHHHHH----hcCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCC Confidence 98765 7999887777766654 3344565556565 578999999999999996 55799999999999999 Q ss_pred HHHhc--------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcC Q lcl|Aclame:pro 246 ENILL--------GTASQEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) Q Consensus 246 p~~l~--------~~~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d 310 (378) |++++ +++.|++.+.|+++||.||++.||++||++++.+.+ .++.|+.+...-.+ T Consensus 157 p~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~~~----------~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 157 PGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIKSA----------LKVNFKQPEKRDKN 219 (219) T ss_pred HHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCc----------cEEeecCcccccCC Confidence 99985 123588999999999999999999999998654422 34566544333222 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.83 E-value=7.2e-21 Score=131.02 Aligned_cols=347 Identities=14% Similarity=0.091 Sum_probs=186.2 Q ss_pred CCcccccccccccccc---C----Cccceee--cccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceec Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLN---N----DTQRVTA--WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISM 71 (378) Q Consensus 1 M~~f~~~~~~~~~~~~---~----~~~~~~~--~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~ 71 (378) |++.+...++..+.-+ . .+...+. ..-.+++..+..++++|+.+|.++.+-++.+.- ++... . T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~vd~~a~d~~r~~~~i~~---~d~~~-~---- 72 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTYYSPSLSLTDDLVQLEALWRDNWIANKVCIKRPEDMVRNWREIYS---NDLNS-K---- 72 (437) T ss_pred CchhhhhHhHHhcCCCccccceeecCccccccHHHHHHHHHhCchhhHHhhcchHHhhcCCceEec---CCCCH-H---- Confidence 9999887776432111 1 1111111 111234456788999999999999999888632 11000 0 Q ss_pred cCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC--------CceEEEEee------------------ Q lcl|Aclame:pro 72 AGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN--------TGELLDLLF------------------ 125 (378) Q Consensus 72 ~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~--------~g~~~~~~~------------------ 125 (378) .-..+...++ += .-.+-+..++.+.-++|.|+++++.++. .|.+..+.+ T Consensus 73 ~~~~~~~~~~-~l----~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s 147 (437) T protein:vir:52 73 QLDLFTKFER-SL----KLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLS 147 (437) T ss_pred HHHHHHHHHH-hh----cHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccc Confidence 0011222222 11 1133334455555578999999865432 244443322 Q ss_pred -----------cCC--eEEEeeeEEEEEcc---c--cCCccccchHHHHHHHHHHHHh----------cCCcceeeeeCC Q lcl|Aclame:pro 126 -----------ADD--KKEYKPEELVRLTS---P--FYINEDTSILDNALASIQTKLE----------QGKLRGLLKINA 177 (378) Q Consensus 126 -----------~~~--~~~~~~~dvih~r~---~--~~~~~~~~~~~~~~~~i~~~~~----------~~~~~gil~~~~ 177 (378) .++ .+.|++++||||.+ | .+...|.|+++.+...|..+-. .+... ++++++ T Consensus 148 ~~fg~p~~y~v~~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~-v~k~~~ 226 (437) T protein:vir:52 148 PNFGRYSEYSILGGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKID-IFKIAG 226 (437) T ss_pred cccCcceEEEEecCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC-ceecch Confidence 111 24689999999963 1 2334488888888877654321 12222 333332 Q ss_pred ---cCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHhccc-- Q lcl|Aclame:pro 178 ---FLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILLGT-- 252 (378) Q Consensus 178 ---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~-- 252 (378) .++.... +.+.+.+.......+.+++++++.+-+|+.++.+..+++ ..+.....+||.+++||..+|.|. T Consensus 227 l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~sgl~-~~l~~~~~~iaaa~~iP~t~L~G~s~ 301 (437) T protein:vir:52 227 LSDKIAAGME----NEVASVISAVQEIKSATNSLLLDAENEYDRKELTFTGLK-DLLTEFRNAVAGAADMPVTILFGQSV 301 (437) T ss_pred HHHHhcCCcH----HHHHHHHHHHHHhcCCCceEEEcCCcceEEEecCcCCHH-HHHHHHHHHHHHHhcCchhhhcCcCc Confidence 2222211 222222222233345678999999999999988766554 234566789999999999888543 Q ss_pred ---c-hHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHH------- Q lcl|Aclame:pro 253 ---A-SQEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKEL------- 314 (378) Q Consensus 253 ---~-~e~~~~~f~~-------~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~------- 314 (378) . .+.+.+.||. .-|.|.++.+-.-+-+..+.+ ..-.+++ .+++|...|.+++ T Consensus 302 ~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~--------~~~~~~~--~f~pL~~~s~kekae~~~~~ 371 (437) T protein:vir:52 302 SGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGG--------LPADWWF--EFVPLTTVKQEQQINMLNTF 371 (437) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCcceE--EeCCcCCcCHHHHHHHHHHH Confidence 1 2445555554 456777766666555444321 1112333 3456776775554 Q ss_pred HHHHHHHHhCCCCCHHHHHHHh----CCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 315 IDLYHENINGPIFTQNQLLVKM----GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 315 ~~~~~~~~~~G~~t~NE~R~~~----gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++.+++++|+++++|+|+++ .++.++..|.--.. +..+.... ..+..+...+...+..+| T Consensus 372 a~a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 437 (437) T protein:vir:52 372 ATAANTLIQNGVLNEYQIANELRESGLFANISAEHIEELK-NADEFAGN-FEEPEKMEGAQVQNSEDQ 437 (437) T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCcccccccc-CCCCCCCc-cCCCCCCCCCCCCCCCCC Confidence 5568889999999999999987 34555544422111 11111000 001111122233344444 No 107 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.78 E-value=3.9e-19 Score=121.51 Aligned_cols=349 Identities=11% Similarity=0.078 Sum_probs=174.7 Q ss_pred CCccccccccccc----------------ccc---C------CccceeecccchhhhhhHHHHHHHHHHHhhhccCceEE Q lcl|Aclame:pro 1 MNLFGKVVSFSRG----------------KLN---N------DTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNH 55 (378) Q Consensus 1 M~~f~~~~~~~~~----------------~~~---~------~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 55 (378) +++..+.-+-..+ ... + ....++...-.+++..++.++++|+.+|.++.+-++.+ T Consensus 55 ~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~iVd~~A~d~~r~~~~i 134 (537) T protein:vir:10 55 IAMMPKVDGSHPDMAMDGLDVEGGTFSAYANPNLSEGLVLWYAQQAFIGHQMCALIATHWLVNKACSQMPRDAMRKGYKI 134 (537) T ss_pred CcccccccccccchhccccccchhhhhhhccccccchhhhhccccCCccHHHHHHHHhCchhhhhhhhhhHHhhcCCcee Confidence 2233221110000 000 0 00012222222344467889999999999999988876 Q ss_pred EEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC---------------CceE Q lcl|Aclame:pro 56 VKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN---------------TGEL 120 (378) Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~---------------~g~~ 120 (378) .-...+. .+....+.|..+-+.+..+..|.+.+ .+..++|.+++++..... .|.+ T Consensus 135 ~~~~~~~---------~~~~~~~~l~~~~~~l~~~~~l~~a~-~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~ 204 (537) T protein:vir:10 135 ISDDGNE---------LDPKDAKFIDRYDRAFNIKKHAIQFV-RKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAY 204 (537) T ss_pred ecCCccc---------ccHHHHHHHHHHHHHhhHHHHHHHHH-HhcccccceEEEEeecCcCCcccccccccccccccce Confidence 3211110 11122233332233333444455544 444457988887653211 1222 Q ss_pred EEEeec---------------C--------------CeEEEeeeEEEEEccc--------cCCccccchHHHHHHHHHHH Q lcl|Aclame:pro 121 LDLLFA---------------D--------------DKKEYKPEELVRLTSP--------FYINEDTSILDNALASIQTK 163 (378) Q Consensus 121 ~~~~~~---------------~--------------~~~~~~~~dvih~r~~--------~~~~~~~~~~~~~~~~i~~~ 163 (378) .++... + .+..|++++|+||.+. .+...|.|.++.+...|..+ T Consensus 205 k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~v~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~ 284 (537) T protein:vir:10 205 KGIVQIDPYWCAPLLDAQASSNPVSMHFYEPTYWLINGKKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAA 284 (537) T ss_pred eEEEEechhhcccccchhhhccCCccccCCceeeeecCeEecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHH Confidence 222110 0 1246788999999631 12334788888777766443 Q ss_pred Hh----------cCCcceeeeeCC--cCCHHHHHHHHHHHHHHHHHhhccccccceeEecC-CceeeecccchhhhhHHH Q lcl|Aclame:pro 164 LE----------QGKLRGLLKINA--FLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN-KTEIVELKKDYSVLNKDE 230 (378) Q Consensus 164 ~~----------~~~~~gil~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~~~~~~ 230 (378) .. ....+ +++++. .+..+ +.+.+.+..........++++++. +.+|++++.+...++ .. T Consensus 285 ~~t~~~~~~l~~~~~~~-v~k~~~~~~l~~~------~~~~~r~~~~~~~r~n~g~~~id~e~e~~e~~~~~lsgl~-~~ 356 (537) T protein:vir:10 285 ERTANEGPMLAMTKRQT-VLKVDAAQVLANK------QQFDETMSWWTATRDNYQVRVVDKDNEDVVQIDTTLNDLD-KV 356 (537) T ss_pred HHHHHHHHHHHHhcCCc-eeeechHHhhcCH------HHHHHHHHHHHhhcCCcceeEecCCCceeEEEeccCCCHH-HH Confidence 21 11222 223322 22222 223333333333334456788876 588888886665553 23 Q ss_pred HHHHHHHHHHHhCCCHHHhccc------c-hHHHHHHHH------HHHHHHHHHHHHHHHHhhcCChhHHhhhcccccee Q lcl|Aclame:pro 231 IDLIKSELLTGYFMNENILLGT------A-SQEQQIYFY------NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYE 297 (378) Q Consensus 231 ~~~~~~~Ia~~fgVPp~~l~~~------~-~e~~~~~f~------~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~ 297 (378) +......||.+.|||..+|-|. . .+.....|+ +..|.|.++.+.+.+-+..+.+ .. T Consensus 357 l~~~~~~iAa~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~---------~~-- 425 (537) T protein:vir:10 357 IMNQYQLVCAIARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRK---------RI-- 425 (537) T ss_pred HHHHHHHHHhhhCCCceeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------Cc-- Confidence 4556678999999999876432 1 233334444 2347888888877776555432 22 Q ss_pred eEEecchhhhhcCHHHHHH-------HHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccch---hccCccC Q lcl|Aclame:pro 298 RIIVDNQLFKFATLKELID-------LYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLS---DLQGSRK 367 (378) Q Consensus 298 ~~~~d~~~l~~~d~~~~~~-------~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~---~~~~~~~ 367 (378) +|.|.+..|...|.+++++ ++.+++++|++++||+|+.++.+|..|-+-+....+....+... +.+.... T Consensus 426 ~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~~~~~ 505 (537) T protein:vir:10 426 RVKVEFPPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGKPVRI 505 (537) T ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhhcccCCccCCcCCC Confidence 3444456788888888776 48999999999999999999887754433221111110000000 0000000 Q ss_pred CCCCC------------CCCCCC Q lcl|Aclame:pro 368 DVTST------------DETNNQ 378 (378) Q Consensus 368 ~~~~~------------~e~~~e 378 (378) ..+.+ ++.++. T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~ 528 (537) T protein:vir:10 506 IEDQPAPSEMFGATSSGESANDP 528 (537) T ss_pred CCCCCCccccCCCCccccccCCC Confidence 00000 000110 No 108 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.74 E-value=1.8e-18 Score=117.92 Aligned_cols=352 Identities=13% Similarity=0.073 Sum_probs=178.3 Q ss_pred CCccccccccc-----c-ccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCc Q lcl|Aclame:pro 1 MNLFGKVVSFS-----R-GKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) Q Consensus 1 M~~f~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~ 74 (378) +|+|--..... + ...-.....+..+.-.+++..++.++++|+.+|+++.+-.+.+.-..... .+. T Consensus 55 ~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~~Vd~~aed~~r~~~~i~~~~~~~---------~~~ 125 (532) T protein:vir:94 55 QNAMAMDYGLQTGRNGRNALSFVEATSWPGFPTLALLAQLPEYRTMHETPADECVRAWGKITCSSKDE---------LAA 125 (532) T ss_pred ccccccccccCcccccccccccccccccchHHHHHHHHcCchhhhhhccchHHHhhCCceEeeCCccc---------cch Confidence 22221110110 0 00001111122222233444677889999999999998888764321111 111 Q ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeC------------------CCceEEEEeec---------- Q lcl|Aclame:pro 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDD------------------NTGELLDLLFA---------- 126 (378) Q Consensus 75 ~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~------------------~~g~~~~~~~~---------- 126 (378) .....|...-..+. -.+-+..++.+..++|.+++++..+. ..|.+.++.+. T Consensus 126 ~~~~~i~~~~~~l~-v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~ 204 (532) T protein:vir:94 126 DKATRITQKLEQYN-VRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAY 204 (532) T ss_pred HHHHHHHHHHHhhh-HHHHHHHHHHhhhcccceEEEEEeccCCccccccccccccccccccceeeEEEeechheeccccc Confidence 22222221111121 12333344555567898988765431 11223333211 Q ss_pred ------------------CCeEEEeeeEEEEEccc--------cCCccccchHHHHHHHHHHHHh----------cCCcc Q lcl|Aclame:pro 127 ------------------DDKKEYKPEELVRLTSP--------FYINEDTSILDNALASIQTKLE----------QGKLR 170 (378) Q Consensus 127 ------------------~~~~~~~~~dvih~r~~--------~~~~~~~~~~~~~~~~i~~~~~----------~~~~~ 170 (378) .....|++++|+||.+. .+...|.|.++.+...+..+.. ..... T Consensus 205 ~~~dp~sp~fg~P~~y~v~~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~ 284 (532) T protein:vir:94 205 NATDPTLPSFYKPDSWIATSGKKIHSSRIHTVVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFSMT 284 (532) T ss_pred ccccccccccCCceeEEEccCeeeccceEEEecCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCc Confidence 12346789999999631 1223478888777766654321 12222 Q ss_pred eeeeeC--CcCCHHHHHHHHHHHHHHHHHhhccccccceeEecC-CceeeecccchhhhhHHHHHHHHHHHHHHhCCCHH Q lcl|Aclame:pro 171 GLLKIN--AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN-KTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNEN 247 (378) Q Consensus 171 gil~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~ 247 (378) ++++. ..++++.. +.+.+++..........++++++. ..+|++++.+...++- .+......||.+.|||.. T Consensus 285 -v~k~~~a~~ls~~~~----~~~~~r~~~~~~~~~n~g~~~id~~~e~~e~~~~~lsgl~~-~l~~~~~~iAaa~~IP~t 358 (532) T protein:vir:94 285 -NLATDMAQLLAPGGA----QSLDARLQLFNLYRDNRNIGALDKGTEEIQQTNTPLSGLDS-LQAQSQEQMAAVSHIPLV 358 (532) T ss_pred -eeeechHHhhcchhH----HHHHHHHHHHHhhcCCccceEEcCCCceeEEEecccCCHHH-HHHHHHHHHHhHhCCCee Confidence 22232 22333333 444444443333333456777875 4788888877665532 345667799999999998 Q ss_pred Hhccc-------chHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHH Q lcl|Aclame:pro 248 ILLGT-------ASQEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKE 313 (378) Q Consensus 248 ~l~~~-------~~e~~~~~f~~-------~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~ 313 (378) +|-|. ..+.....|+. .-|.|.++.+-+.|-+..|.. ....++|.| ..|...|.++ T Consensus 359 ~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g~--------~~~d~~~~f--~pL~~~s~kE 428 (532) T protein:vir:94 359 KLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSEYGQ--------IDPGLAWEW--SPLMELDDKE 428 (532) T ss_pred eeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCceEEe--CCCCCCCHHH Confidence 77432 12333333433 447888888877776655421 111233444 4677777776 Q ss_pred HH-------HHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeeccccee-cc-cchhc--------cCccC-----CCCC Q lcl|Aclame:pro 314 LI-------DLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVA-VK-NLSDL--------QGSRK-----DVTS 371 (378) Q Consensus 314 ~~-------~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~-~~-~~~~~--------~~~~~-----~~~~ 371 (378) ++ +++.+++++|++++||+|++++..|..+.+.....-+... .+ ...+. +.+.. .+.. T Consensus 429 kAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (532) T protein:vir:94 429 LAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPNPQPDSE 508 (532) T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCCCCC Confidence 65 4568899999999999999999999877553322211110 00 00000 00000 0112 Q ss_pred CCCCCCC Q lcl|Aclame:pro 372 TDETNNQ 378 (378) Q Consensus 372 ~~e~~~e 378 (378) +++.+++ T Consensus 509 ~d~~~~~ 515 (532) T protein:vir:94 509 DDQTDNQ 515 (532) T ss_pred CCCCCCc Confidence 2333333 No 109 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.73 E-value=1.9e-18 Score=117.72 Aligned_cols=349 Identities=11% Similarity=0.061 Sum_probs=169.2 Q ss_pred CCccccccc---------cccccccCCccc---eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVS---------FSRGKLNNDTQR---VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~---------~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) +++-+...+ +.......++.. +..+.-.+++..+..++++|+.+|+++.+-.+.+--........+.. T Consensus 101 Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~gyql~alY~~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~ 180 (862) T protein:vir:99 101 DDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQGFIGHQACALIAQHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEES 180 (862) T ss_pred hcchhhhhhccccccccccccchhccccccccCcccHHHHHHHHhCchhhhhhhhhhHHHhhCCceEeecCcccccCHHH Confidence 111111111 100000011110 11111134444677889999999999999888764221111100011 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC---------------CceEEEEeecC------ Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN---------------TGELLDLLFAD------ 127 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~---------------~g~~~~~~~~~------ 127 (378) + ..+...+. + +-- .+-+..++.+.-++|.+++++..... .|.+.++...+ T Consensus 181 ~----~~ie~~~~-r---L~v-~~~l~eair~~RLyGga~ililv~~~D~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p 251 (862) T protein:vir:99 181 L----EKFKAIDV-E---FKV-KENLIEFNRFKNVFGIRVAIFVVDSEDPDYYEKPFNPDGITPGSYRGISQIDPYWMMP 251 (862) T ss_pred H----HHHHHHHH-H---hhH-HHHHHHHHHhcccccceEEEEEecCcCchhhhcCcCcccccccceeEEEEechhhhcc Confidence 1 11222221 1 111 22333344444567877666542211 13333322110 Q ss_pred -----------------------CeEEEeeeEEEEEccc--------cCCccccchHHHHHHHHHHHHhc---------- Q lcl|Aclame:pro 128 -----------------------DKKEYKPEELVRLTSP--------FYINEDTSILDNALASIQTKLEQ---------- 166 (378) Q Consensus 128 -----------------------~~~~~~~~dvih~r~~--------~~~~~~~~~~~~~~~~i~~~~~~---------- 166 (378) .+..|.++.||||.+. .+...|.|.++.+...|..+... T Consensus 252 ~~v~~~~~Dp~sp~yGkP~~y~I~g~~IH~SRliif~g~~vpd~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~k 331 (862) T protein:vir:99 252 MLTAESTADPSSQFFYEPEFWIISGQKYHRSHLIIARGPQPADILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMN 331 (862) T ss_pred cccccccccccccccCCceeeeecCeeeccceeEEecCCCchhhhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1124678899998641 12234788888887776554321 Q ss_pred CCcceeeeeCC--cCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 167 GKLRGLLKINA--FLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFM 244 (378) Q Consensus 167 ~~~~gil~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgV 244 (378) .... +++++. .+..+ +.+.++++......+..++++++.+-+|+.++.+...++- .+.....+||.+.+| T Consensus 332 a~l~-v~ktd~l~~l~~e------d~l~~r~~~~~~~rdN~Gi~liD~eEe~e~ls~slSGL~d-ll~~~~q~IAaas~I 403 (862) T protein:vir:99 332 KRTT-AIHTDTAKAIANE------DKFIQRLMFWVRYRDNHAVKVLGTDETMEQFDTSLADFDA-VIMGQYQLVASIAKT 403 (862) T ss_pred hccc-eeechhHhhhccH------HHHHHHHHHHHhccCcceeEEecCCCceeEEecccCChHH-HHHHHHHHHHhhhCC Confidence 1222 223322 12222 1222223222233334568999999999999877766642 234556799999999 Q ss_pred CHHHhccc-------chHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcC Q lcl|Aclame:pro 245 NENILLGT-------ASQEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) Q Consensus 245 Pp~~l~~~-------~~e~~~~~f~~-------~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d 310 (378) |..+|.|. ..+.....||. .-|.|+++.+...+..++-. .. ++.|.+..|...| T Consensus 404 P~tiLfGqspaGlnATGE~D~~nYyD~I~s~QE~~L~P~LerL~~li~~~lg~----------~~--d~~ieFnpL~~~s 471 (862) T protein:vir:99 404 PATKLLGTAPKGFNSTGEFETISYHEELESIQEHVYMPFLQRHYLISRLSLGI----------QH--EIDVVMEPVASMT 471 (862) T ss_pred CceeecccCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CC--cceEEeCCCCCCC Confidence 99876432 12434454544 45778888887766554421 11 2333445788888 Q ss_pred HHHHHHH-------HHHHHhCCCCCHHHHHHHh------CCCCCCCCCeee----ecccceecccchhcc--CccCCCCC Q lcl|Aclame:pro 311 LKELIDL-------YHENINGPIFTQNQLLVKM------GEQPIEGGDVYI----ANLNAVAVKNLSDLQ--GSRKDVTS 371 (378) Q Consensus 311 ~~~~~~~-------~~~~~~~G~~t~NE~R~~~------gl~p~~gGD~~~----~~~n~~~~~~~~~~~--~~~~~~~~ 371 (378) .+++++. +.+++.+|+++++|+|+++ |++.++.-|.-- .+.|+..+...+... ....+... T Consensus 472 ekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~~e~~g~a~~~ap~de~~a 551 (862) T protein:vir:99 472 AQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLAAYQKAGAAQETASAKETQA 551 (862) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCcccccccccCCccccccccccccc Confidence 8887755 7799999999999999976 555554332211 112222111110000 00000000 Q ss_pred C-----CCCCCC Q lcl|Aclame:pro 372 T-----DETNNQ 378 (378) Q Consensus 372 ~-----~e~~~e 378 (378) + -|.++. T Consensus 552 ga~~~~~e~d~~ 563 (862) T protein:vir:99 552 GAAVTTAEGDQP 563 (862) T ss_pred ccCCccccCCcc Confidence 0 011111 No 110 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.59 E-value=3.9e-16 Score=105.04 Aligned_cols=347 Identities=10% Similarity=0.056 Sum_probs=166.9 Q ss_pred CCccccccc--ccccccc-CCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHH Q lcl|Aclame:pro 1 MNLFGKVVS--FSRGKLN-NDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLD 77 (378) Q Consensus 1 M~~f~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (378) +++-+.... +...... .....++.+.-.+++..+..++++|+++|.++-+-.+.+.- ..+ ...+... ..+. T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~alY~~~~l~rkiVd~pAeDa~R~g~~I~~-~~~-e~~~~~~----~~l~ 157 (765) T protein:vir:96 84 KAAAGGQNPYVVPTMLQDWYNSQGFIGYQACAIISQHWLVDKACSMSGEDAARNGWELKS-DGR-KLSDEQS----ALIA 157 (765) T ss_pred HHhhhccCccchhhHHHhhhcccCCccHHHHHHHHhCchhhhhhhcchHHhhcCCceeec-Ccc-ccCHHHH----HHHH Confidence 111111100 0000000 00011222222344446778899999999999888777631 111 0000000 1122 Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC---------------CceEEEEeec---------------C Q lcl|Aclame:pro 78 EVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN---------------TGELLDLLFA---------------D 127 (378) Q Consensus 78 ~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~---------------~g~~~~~~~~---------------~ 127 (378) ..+. .+ .-.+-+..++.+.-++|.+|+++..... .|.+.++... + T Consensus 158 ~~~~----rl-~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~D 232 (765) T protein:vir:96 158 RRDM----EF-RVKDNLVELNRFKNVFGVRIALFVVESDDPDYYEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTAD 232 (765) T ss_pred HHHH----Hh-hHHHHHHHHHHHhhhceeeEEEEEecccCcchhhccccccccccceeeEEEEechhhcccccchhcccc Confidence 1111 01 1234445556666678888887643211 1233222210 0 Q ss_pred --------------CeEEEeeeEEEEEccc--------cCCccccchHHHHHHHHHHHHh----------cCCcceeeee Q lcl|Aclame:pro 128 --------------DKKEYKPEELVRLTSP--------FYINEDTSILDNALASIQTKLE----------QGKLRGLLKI 175 (378) Q Consensus 128 --------------~~~~~~~~dvih~r~~--------~~~~~~~~~~~~~~~~i~~~~~----------~~~~~gil~~ 175 (378) ....|+++.||||.+. .+...|.|.++.++..|..+.. ....+ ++++ T Consensus 233 p~sp~fg~P~~y~i~g~~IH~SRli~~~g~~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~-v~k~ 311 (765) T protein:vir:96 233 PSAEHFYEPDFWIISGKKYHRSHLVVVRGPQPPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTS-TIHV 311 (765) T ss_pred ccccccCcceeeeecCceeccceEEEecCCCchhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eeee Confidence 1234678899999642 1223478888887777654422 11222 2333 Q ss_pred CC--cCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHhccc- Q lcl|Aclame:pro 176 NA--FLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILLGT- 252 (378) Q Consensus 176 ~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~- 252 (378) +. .+..+ +.+.++++. .....+..++++++.+-+|+.++.+...++- .+.....+||.+.+||..+|-|. T Consensus 312 ~~~~~l~~~--~~l~~r~~~----~~~~r~n~g~~~id~ee~~e~~s~~lsgl~d-~l~~~~~~iAaas~IP~t~LfGqs 384 (765) T protein:vir:96 312 DVEKAIANE--DAFNARLAF----WIANRDNHGVKVIGIDETMEQFDTNLSDFDS-VIMNQYQLVAAIAKTPATKLLGTS 384 (765) T ss_pred chHhhhccH--HHHHHHHHH----HHHhcCCceeEEecCCcceeEEecccCCHHH-HHHHHHHHHHhhhCCCeeeeccCC Confidence 22 12222 223333332 2233334568889999999999887766542 23555689999999999777432 Q ss_pred ------chHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHH--- Q lcl|Aclame:pro 253 ------ASQEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELID--- 316 (378) Q Consensus 253 ------~~e~~~~~f~~-------~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~--- 316 (378) ..+...+.||. .-|.|.++.+-+-|-+. .+.. - ++.|.+..|...|.+++++ T Consensus 385 p~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s--------~~i~--~--d~~i~FnpL~~~sekEkAei~~ 452 (765) T protein:vir:96 385 PKGFNATGEHETISYHEELESIQEHIFDPLLERHYLLLAKS--------ESID--V--QLEIVWNPVDSTTSQQQAELNN 452 (765) T ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCC--C--cceEEeCCCCCCCHHHHHHHHH Confidence 12434455554 33555554444433221 1111 1 2344445788788877765 Q ss_pred ----HHHHHHhCCCCCHHHHHHHhCCCCCCCCC-----eeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 317 ----LYHENINGPIFTQNQLLVKMGEQPIEGGD-----VYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 317 ----~~~~~~~~G~~t~NE~R~~~gl~p~~gGD-----~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++.+++++|++++||+|+.++.+|.-|.+ .......+.|.+......++.++.++..+.+-+ T Consensus 453 k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~~~~~~~~~~~~~e~~~~ 523 (765) T protein:vir:96 453 KKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAELEKAGAQSAKAKGEAERA 523 (765) T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCccccccccCCCcccccccCccccc Confidence 48899999999999999998665542211 111111111211111111111111111111111 No 111 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.55 E-value=2.1e-15 Score=101.09 Aligned_cols=331 Identities=12% Similarity=0.069 Sum_probs=161.9 Q ss_pred CCcccc--ccccccccccCCcccee----ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCc Q lcl|Aclame:pro 1 MNLFGK--VVSFSRGKLNNDTQRVT----AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) Q Consensus 1 M~~f~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~ 74 (378) |+.|.. ...+..+...+...... .+.-.+++..+..++++|+.+|.++.+-.|.+- . . ..+. ..+. T Consensus 1 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~-g--~--~~~~---~~~~ 72 (427) T protein:vir:10 1 MKIVKHDGYNDIFNGGADGSPKPFFMSDASYHVGSFYNDNATAKRIVDVIPEEMVTAGFKMS-G--V--KDEK---EFKS 72 (427) T ss_pred CCccccchHHHHhhcCCCCcccCccccCchHHHHHHHHcCchhhhhhccchHHhhcCCcccc-C--c--cHHH---HHHH Confidence 777754 11221111111111111 111134545677889999999999998877752 1 1 0111 1111 Q ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeC---------CCceEEEEee-------------------- Q lcl|Aclame:pro 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDD---------NTGELLDLLF-------------------- 125 (378) Q Consensus 75 ~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~---------~~g~~~~~~~-------------------- 125 (378) .+. -|+ -.+-+..++.+..++|.+++++..++ ..|.+.++.+ T Consensus 73 ~~~-~l~--------~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~~f 143 (427) T protein:vir:10 73 LWD-SYK--------LDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRY 143 (427) T ss_pred HHH-Hhh--------HHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCcccccc Confidence 121 122 23344555666667899998875432 1344444322 Q ss_pred --------cCC----eEEEeeeEEEEEccc--------cCCccccchHH-HHHHHHHHHHh----------cCCcceeee Q lcl|Aclame:pro 126 --------ADD----KKEYKPEELVRLTSP--------FYINEDTSILD-NALASIQTKLE----------QGKLRGLLK 174 (378) Q Consensus 126 --------~~~----~~~~~~~dvih~r~~--------~~~~~~~~~~~-~~~~~i~~~~~----------~~~~~gil~ 174 (378) .++ .+.++++.|+||.+. .+...|.|++. .+...+..+.. ..+.+ +++ T Consensus 144 g~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~-v~k 222 (427) T protein:vir:10 144 GEPEIYKVSPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQA-VWK 222 (427) T ss_pred CcceEEEEecCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-ccc Confidence 111 156889999999632 12233566663 44444433211 11111 223 Q ss_pred eCCc---CC-HHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHhc Q lcl|Aclame:pro 175 INAF---LD-IDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILL 250 (378) Q Consensus 175 ~~~~---l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~ 250 (378) +++. ++ .+...+.++++....+. . ++.+.+++.+.+-+|+.++.+...++- .+.....+||.+.+||..+|. T Consensus 223 ~~~l~~~~~~~~~~~~~~~r~~~~~~~--~-~~~~~~~l~~~~e~~e~~~~~lsgl~~-~~~~~~~~iaaa~~IP~t~L~ 298 (427) T protein:vir:10 223 VKGLAEMCDDDDAQYAARLRLAQVDDN--S-GVGRAIGIDAETEEYDVLNSDISGVPE-FLSSKMDRIVSLSGIHEIIIK 298 (427) T ss_pred chhHHHHhcCccchHHHHHHHHHHHHh--c-CcccceeeecCCCceeEEecccCChHH-HHHHHHHHHHhhhCCCeeeec Confidence 3221 11 11222333444332211 1 234455666667889988877766542 345667899999999998774 Q ss_pred cc------ch-HHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHH-- Q lcl|Aclame:pro 251 GT------AS-QEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKEL-- 314 (378) Q Consensus 251 ~~------~~-e~~~~~f~~-------~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~-- 314 (378) |. .+ +.....||. .-|.|.++.+-+-+- .. . ++.|.+.+|...+.+++ T Consensus 299 G~sp~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i~---~s---------~----~~~~~f~pL~~~s~kEkae 362 (427) T protein:vir:10 299 NKNVGGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFIV---DE---------E----EWSIEFEPLSVPSKKEESE 362 (427) T ss_pred cCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cC---------C----CcEEEeCCCCCCCHHHHHH Confidence 32 12 333444443 335555544432221 10 1 12333346666666655 Q ss_pred -----HHHHHHHHhCCCCCHHHHHHHh----CCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 315 -----IDLYHENINGPIFTQNQLLVKM----GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 315 -----~~~~~~~~~~G~~t~NE~R~~~----gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++.+++++|+++++|+|+.+ +..++++++.. ..+...+..... ...+++.++| T Consensus 363 i~~~~a~a~~~~~~~gvi~~~e~r~~L~~~~~~~~~~~~~~~-------~~e~~~~~~e~~--p~~~e~~~d~ 426 (427) T protein:vir:10 363 ITKNNVESVTKAITEQIIDLEEARDTLRSIAPEFKLKDGNNI-------NIREPEETTEPE--PGLGEKLEDE 426 (427) T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHhhhccccCCCCccc-------cccccchhcCCC--CCCCCCCCCC Confidence 5568889999999999999876 44444443321 122222211111 1111111222 No 112 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.54 E-value=4e-15 Score=99.51 Aligned_cols=338 Identities=11% Similarity=0.075 Sum_probs=166.6 Q ss_pred CCccccc---cccccccccC--CccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCch Q lcl|Aclame:pro 1 MNLFGKV---VSFSRGKLNN--DTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) Q Consensus 1 M~~f~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) |+|+-.+ .......+.. ....+.-..-.+++..+..++++|+.+|..+-+-++.+- .. + ++.. .. T Consensus 20 ~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY~~~~l~r~iVd~~a~d~~r~g~~i~-~~-~----~~~~----~~ 89 (461) T protein:vir:80 20 NDFMVGHGKANSRDKLTRQTPGNGQKLDLKACENLYASNSIAMNIVDIISEDMVRAGWSLK-TD-N----KEMK----KN 89 (461) T ss_pred hHHHhhcCCcchhhhhhccccCcccccCHHHHHHHHHhCCccchhhccchHHhhcCCeeee-cC-C----HHHH----HH Confidence 5555221 1111011111 111111111123444667789999999999988777652 11 1 0100 11 Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCC---------------ceEEEEee--------------- Q lcl|Aclame:pro 76 LDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNT---------------GELLDLLF--------------- 125 (378) Q Consensus 76 l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~---------------g~~~~~~~--------------- 125 (378) +...++ ..-- .+-+..++.+..++|.|++++...+.. +.+.++.| T Consensus 90 ~~~~~~----~l~~-~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l~~~~~~~i~~~~~~~dp 164 (461) T protein:vir:80 90 IESKWR----KLKT-KDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFNTQKVTQLYLNQDM 164 (461) T ss_pred HHHHHH----HhhH-HHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEEEeccccccchhhhcccC Confidence 222221 1112 334455566667899999887543211 12222221 Q ss_pred -------------cC---------------CeEEEeeeEEEEEcccc--CCccccchHHHHHHHHHHHHh---------- Q lcl|Aclame:pro 126 -------------AD---------------DKKEYKPEELVRLTSPF--YINEDTSILDNALASIQTKLE---------- 165 (378) Q Consensus 126 -------------~~---------------~~~~~~~~dvih~r~~~--~~~~~~~~~~~~~~~i~~~~~---------- 165 (378) .+ ..+.++++.|+||.+.. +...|.|.++.+...+..+.. T Consensus 165 ~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~~~~~~~~~~~~l~~ 244 (461) T protein:vir:80 165 FSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIITVMDTSLWSVGQILY 244 (461) T ss_pred cCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHH Confidence 00 12468899999997522 233478888877766644321 Q ss_pred cCCcceeeeeCCc--CCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 166 QGKLRGLLKINAF--LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYF 243 (378) Q Consensus 166 ~~~~~gil~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fg 243 (378) .... .++++++. +..+... ...+.++... +..++++++.+-+|+.++.+..+++ ..++.....||.+-+ T Consensus 245 ~~~~-~v~k~~~l~~~~~~~~~----~~~~~~~~~~---~~~g~~~~d~~e~~e~~~~~lsgl~-~~l~~~~~~iaa~s~ 315 (461) T protein:vir:80 245 DFAF-KVYKTDDIDALNKDDKA----NLTAMLDFMF---RTEALAIIKGDEQLTKESTNVSGMK-DLLDYGWDYLAGAVR 315 (461) T ss_pred HhCC-CceecchHHhhhchHHH----HHHHHHHHhc---CCceEEEEcCCcceEEEecCcCCHH-HHHHHHHHHHhhhhc Confidence 1111 23444421 1122222 2333333222 2335788999999999987766553 234667789999999 Q ss_pred CCHHHhccc-----ch-HHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhHHhhhcccc-ceeeEEecchhhhhc Q lcl|Aclame:pro 244 MNENILLGT-----AS-QEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNL-YYERIIVDNQLFKFA 309 (378) Q Consensus 244 VPp~~l~~~-----~~-e~~~~~f~~-------~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~-~~~~~~~d~~~l~~~ 309 (378) ||..+|.|. ++ +.+...|+. .-+.|+++.+-+.+-+..+. .+.... ...++.|.+++|... T Consensus 316 iP~t~L~G~s~g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~-----~~~~~~p~~~~~~i~f~~L~~~ 390 (461) T protein:vir:80 316 MPKTVLKGQEAGTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDD-----CGPSIDPDSFEWAIEFNPLWNL 390 (461) T ss_pred CCeeeeecccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccccCccccceEEEeCCCCCC Confidence 999877432 22 334444433 34566666665555443321 000100 112344555678888 Q ss_pred CHHHHHH-------HHHHHHhCCCCCHHHHHHHh-C---CCCCCC--CCeeeecccceecccchhccCccCCCCCCCCCC Q lcl|Aclame:pro 310 TLKELID-------LYHENINGPIFTQNQLLVKM-G---EQPIEG--GDVYIANLNAVAVKNLSDLQGSRKDVTSTDETN 376 (378) Q Consensus 310 d~~~~~~-------~~~~~~~~G~~t~NE~R~~~-g---l~p~~g--GD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~ 376 (378) |.+++++ ++.+++++|++|++|+|+.+ + ++|-.+ |+.. .++..... ..+....++.+ T Consensus 391 s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~e~~~ 460 (461) T protein:vir:80 391 DSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSA-------EIDKLAKL---VYDAYAKKNAD 460 (461) T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCccCCCCCc-------hhhhhhhh---ccccccccCCC Confidence 8887755 58899999999999999855 3 333211 1110 01111000 00000011111 Q ss_pred C Q lcl|Aclame:pro 377 N 377 (378) Q Consensus 377 ~ 377 (378) + T Consensus 461 g 461 (461) T protein:vir:80 461 G 461 (461) T ss_pred C Confidence 1 No 113 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.53 E-value=3e-15 Score=100.17 Aligned_cols=329 Identities=13% Similarity=0.027 Sum_probs=155.8 Q ss_pred CCcccccccc----cccccc---C-Cccc---------eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFGKVVSF----SRGKLN---N-DTQR---------VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~~~~~~----~~~~~~---~-~~~~---------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) ||+|=.-+.. ..++.+ . .+.. +.-..-.+++..+..++++|+.+|.++.+-.|.+- . . T Consensus 1 ~~~~m~~~~~~~~~~D~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~~r~g~~i~-g--~-- 75 (435) T protein:vir:79 1 MGVFMSDKVKAITKEDGYNEIFGSKDGTFRPNAFYMQRAAFKALSQFYEEDGMARRIVDVIPEEMVTPGFKVD-G--V-- 75 (435) T ss_pred CCcccccccccchhhcchhhhhcccccccccCcccCCcCCHHHHHHHHhcCchhhhhhccchHHhhcCCceec-C--C-- Confidence 9999543321 112211 0 0100 00000123344567789999999999988887652 1 1 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC---------CceEEEEe---------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN---------TGELLDLL---------- 124 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~---------~g~~~~~~---------- 124 (378) ..+ ..+...+. .+ ...+-+..++.+..++|.|++++...+. .|.+.++. T Consensus 76 ~~~-------~~~~~~~~----~l-~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~ 143 (435) T protein:vir:79 76 KNE-------KSFKSRWD----EL-RLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIH 143 (435) T ss_pred ChH-------HHHHHHHH----Hh-hHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccch Confidence 010 11222221 01 1123444455566678988887764321 23332221 Q ss_pred ------------------ec--C--CeEEEeeeEEEEEccc--------cCCccccchH-HHHHHHHHHHHh-------- Q lcl|Aclame:pro 125 ------------------FA--D--DKKEYKPEELVRLTSP--------FYINEDTSIL-DNALASIQTKLE-------- 165 (378) Q Consensus 125 ------------------~~--~--~~~~~~~~dvih~r~~--------~~~~~~~~~~-~~~~~~i~~~~~-------- 165 (378) .. + ..+.+++++|+||.+. .+...|.|++ +.+...+..+.. T Consensus 144 ~~~~dp~sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l 223 (435) T protein:vir:79 144 ERETNARSVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQL 223 (435) T ss_pred hhccCCcccccCcceEEEEecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHH Confidence 11 1 2457899999999631 1223356665 556555433221 Q ss_pred --cCCcceeeeeCC---cCC-HHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 166 --QGKLRGLLKINA---FLD-IDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELL 239 (378) Q Consensus 166 --~~~~~gil~~~~---~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia 239 (378) ..+.+ ++++++ .++ +....+..+++..... . . ++.+.+++.+.+.+|+.++.+..+++ ..++....+|| T Consensus 224 ~~~~~~~-v~~~~~l~~~~~~~~~~~~~~~r~~~~~~-~-~-~~~~~~~i~~~~e~~e~~~~~lsgl~-~~~~~~~~~ia 298 (435) T protein:vir:79 224 LRRKQQA-VWKARDLALMCDDEEGRYAARLRLAQVDD-E-S-GVGKAIGIDATDEEYEVLNSDVSGVP-EFLQEKIDRIV 298 (435) T ss_pred HHHhcCc-cccchhHHHhhcCccchHHHHHHHHHHHH-h-c-CCCCceeEecCCcceEEEecccCCHH-HHHHHHHHHHH Confidence 11111 222321 111 1122223333322211 1 1 22334555555667898887766553 23466678999 Q ss_pred HHhCCCHHHhccc------ch-HHHHHHHHHH-------HHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchh Q lcl|Aclame:pro 240 TGYFMNENILLGT------AS-QEQQIYFYNS-------TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQL 305 (378) Q Consensus 240 ~~fgVPp~~l~~~------~~-e~~~~~f~~~-------~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~ 305 (378) .+.|||..+|.|. .+ +.....||.. -+.|.++.+-+-+ .- .. ++.|.+++ T Consensus 299 aa~~IP~t~L~G~s~~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~li----~~--------s~----d~~~~f~p 362 (435) T protein:vir:79 299 ALTGIHEIIIKNKNTGGVSASQNTALETFYKLIDRKRVEDYKPILEFLLPFM----IS--------ET----EWSIEFEP 362 (435) T ss_pred hhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hc--------CC----CCeEEeCC Confidence 9999999877432 22 3334444432 2444443332221 10 01 23333456 Q ss_pred hhhcCHHHH-------HHHHHHHHhCCCCCHHHHHHHh-CCCCCCC---CCeeeecccceecccchhccCccCCCCCCCC Q lcl|Aclame:pro 306 FKFATLKEL-------IDLYHENINGPIFTQNQLLVKM-GEQPIEG---GDVYIANLNAVAVKNLSDLQGSRKDVTSTDE 374 (378) Q Consensus 306 l~~~d~~~~-------~~~~~~~~~~G~~t~NE~R~~~-gl~p~~g---GD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e 374 (378) |...|.+++ ++++.+++++|+++++|+|+.+ ...|..| .+.. .++...+.+. ++..+. T Consensus 363 L~~~sekEkAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~-------~~~~~~d~~~----~~~~e~ 431 (435) T protein:vir:79 363 LSVPSDKDKAEIMAKNVESVVKLKAEQAINLKETRDTLRSICPDLKIMDNDNI-------ELPEPEDLDP----EPGQEG 431 (435) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccccCCCCcccc-------cCCccccCCC----CCCCCC Confidence 777777555 5567788999999999999877 3332221 1111 1111111111 111122 Q ss_pred CCCC Q lcl|Aclame:pro 375 TNNQ 378 (378) Q Consensus 375 ~~~e 378 (378) +.|| T Consensus 432 g~~~ 435 (435) T protein:vir:79 432 GLNK 435 (435) T ss_pred CCCC Confidence 2222 No 114 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.47 E-value=1.9e-14 Score=95.84 Aligned_cols=332 Identities=13% Similarity=0.050 Sum_probs=158.8 Q ss_pred CCcccccccccccc-----ccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCch Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK-----LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) Q Consensus 1 M~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) |.=.+...+..-+. ........+...-.+++..+..++++|+.+|.++.+-.|.+- .. +.. ...... T Consensus 1 ~~~~D~~~n~~~gg~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~---~~----~~~-~~~~~~ 72 (422) T protein:vir:10 1 MVKTDSYANIFLGGSDGSEIYGSLQNQAPTILASLYADNALVRRIIDTIPETALAAGFHID---GI----DDE-PAFWSR 72 (422) T ss_pred CccchhhHHHHcCCCCCccccCcccccCHHHHHHHHHhChhhHHHHhhhhHHHhcCCcccc---CC----CHH-HHHHHH Confidence 33333322221110 001111111122234555678889999999999988777751 11 110 111222 Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC---------CceEEEEee--------------------- Q lcl|Aclame:pro 76 LDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN---------TGELLDLLF--------------------- 125 (378) Q Consensus 76 l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~---------~g~~~~~~~--------------------- 125 (378) +.+ |+ -.+-+..++.+..++|.|++++..++. .|.+..+.+ T Consensus 73 ~~~-l~--------~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~~fg 143 (422) T protein:vir:10 73 WDD-LE--------MTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNARFG 143 (422) T ss_pred HHH-hh--------HHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCccccccC Confidence 222 22 233445556666678999888764331 233322211 Q ss_pred -------cC----CeEEEeeeEEEEEccc--------cCCccccchHHH-HHHHHHHHHh----------cCCcceeeee Q lcl|Aclame:pro 126 -------AD----DKKEYKPEELVRLTSP--------FYINEDTSILDN-ALASIQTKLE----------QGKLRGLLKI 175 (378) Q Consensus 126 -------~~----~~~~~~~~dvih~r~~--------~~~~~~~~~~~~-~~~~i~~~~~----------~~~~~gil~~ 175 (378) .+ ..+.++++.|+||.+. .+...|.|++.. +...+..+.. .++.+ ++++ T Consensus 144 ~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~-v~~~ 222 (422) T protein:vir:10 144 EPLTYRITTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQA-VWKA 222 (422) T ss_pred cceEEEEecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccc Confidence 11 1257889999999531 222346777754 4454433211 11111 2223 Q ss_pred CC---cCC-HHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHhcc Q lcl|Aclame:pro 176 NA---FLD-IDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILLG 251 (378) Q Consensus 176 ~~---~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~ 251 (378) ++ .++ .....+.++++...... . ++.+.+++.+.+.+|+.++.+...++ ..+.....+||.+.|||..+|.| T Consensus 223 ~~l~~~~~~~~~~~~~~~r~~~~~~~--~-~~~~~~~l~~~~e~~e~~~~~lsgl~-~~~~~~~~~iaaa~~IP~t~L~G 298 (422) T protein:vir:10 223 KGLAELCDDSEGFGAARLRLAQVDNN--S-GVGQAIGIDAESEEYSVLNSDIGGID-AFLDKKFDRIVALSGIHEIILKN 298 (422) T ss_pred hhHHHhcCCccchHHHHHHHHHHHHh--c-CCccceeEecCCcceEEEecccCChH-HHHHHHHHHHHhhhCCCeeeecc Confidence 22 111 22223334444332221 1 23334555566788999987776653 23456678999999999987743 Q ss_pred c-------chHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHH--- Q lcl|Aclame:pro 252 T-------ASQEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKEL--- 314 (378) Q Consensus 252 ~-------~~e~~~~~f~~-------~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~--- 314 (378) . +.+...+.||. .-|.|.++.+-..+ .. .. ++.|.+.+|...|.+++ T Consensus 299 ~s~~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~i----~~--------s~----~~~~~f~pL~~~sekekaei 362 (422) T protein:vir:10 299 KNVGGVSSSQNTALETFHKLVDRKRNAELLPILEFLIPFI----VN--------AE----EWSVEFNPLAQESSKDKAEI 362 (422) T ss_pred CCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cc--------cC----CcEEEeCCCCCCCHHHHHHH Confidence 2 12333444444 23455544442222 11 11 12333346666666655 Q ss_pred ----HHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 315 ----IDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 315 ----~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++.+++++|+++++|+|+.+--.... .-+..+..+.+. ...+ ....+.++.++. T Consensus 363 ~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~----~~~~~~~~~~~~-~~~~---~~~~~~~~~~~d 422 (422) T protein:vir:10 363 LEKNVNSIAALIAAGAMDIDEARDTLRTIAPE----VKINDGSVETEV-TISE---TSNDPLEVPTDD 422 (422) T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHhhhhccc----ccCCCCCCcccc-chhh---cCCCCCCCCCCC Confidence 5568889999999999999987322211 111112222111 1111 111111111111 No 115 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.44 E-value=9.5e-14 Score=91.99 Aligned_cols=367 Identities=14% Similarity=0.080 Sum_probs=189.3 Q ss_pred CCccccccccccc---------------cccCCccceeec--------------------ccchhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRG---------------KLNNDTQRVTAW--------------------QNEAVEYTSAFVTNIHNKIA 45 (378) Q Consensus 1 M~~f~~~~~~~~~---------------~~~~~~~~~~~~--------------------~~~~~~~~~~~v~~~i~~ia 45 (378) |||++|.+++..- +-.....+...| +...+..+++++.+||+.+. T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 80 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDKLE 80 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 9999998765310 000000000000 01124457788899999888 Q ss_pred hhhccC-ceEEEEecc--cccccccceeccCchHHHHHhccC--CCCCCHHHHHHHHHHHHHhcCCcEEEEEEe------ Q lcl|Aclame:pro 46 NEITKV-EFNHVKYKK--SDVGSDTLISMAGSDLDEVLNWSP--KGERNSMDFWRKVIKKLLSAPYVDLYAVFD------ 114 (378) Q Consensus 46 ~~ia~~-p~~~~~~~~--~~~~~~~~~~~~~~~l~~lL~~~P--N~~~s~~~f~~~~~~~~ll~Gna~~~~~~~------ 114 (378) +.+-.. -+.+.-+.. .....+...... ..+.+.+..++ +..++.+.+...++..++..|++|+.+++. T Consensus 81 ~nvVG~ggi~~~~~~~~~~~~~~~~~~~~i-e~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~~~~ 159 (502) T protein:vir:79 81 ERVVGKNGIIVEPHPVLRNGAIARDLAAEI-RTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRINSLT 159 (502) T ss_pred HhhccCCceeeeeccCCCChhHHHHHHHHH-HHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccCccC Confidence 876543 222211111 100000000000 01122222222 224788999999999999999999976431 Q ss_pred ---------------------------------CCCceEEEEeec---------CCeEEEeeeEEEEEcccc--CCcccc Q lcl|Aclame:pro 115 ---------------------------------DNTGELLDLLFA---------DDKKEYKPEELVRLTSPF--YINEDT 150 (378) Q Consensus 115 ---------------------------------~~~g~~~~~~~~---------~~~~~~~~~dvih~r~~~--~~~~~~ 150 (378) |..|+++.||.. .....+++++|+|+..+. .-..|+ T Consensus 160 ~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~gQ~RGi 239 (502) T protein:vir:79 160 PSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQMRGT 239 (502) T ss_pred CCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccCCccccCC Confidence 223555555532 112468889999997543 234577 Q ss_pred chHHHHHHHHH-----------HHHhcCCcceeeeeCCcC--CHHHHHHHHHHHHHHHHHhhcccccccee-EecCCcee Q lcl|Aclame:pro 151 SILDNALASIQ-----------TKLEQGKLRGLLKINAFL--DIDNTQEYREKALTTIKNMQEGSSYNGLT-PVDNKTEI 216 (378) Q Consensus 151 ~~~~~~~~~i~-----------~~~~~~~~~gil~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~ 216 (378) +.+..++..+. .+.-++.+.++++.+..- .++....... . ....-..|.++ .|..|.++ T Consensus 240 s~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~---~----~~~~l~pG~i~~~L~pGe~i 312 (502) T protein:vir:79 240 SLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEPDGNGSKEN---E----RELTIQPGIIYDDLKPGEEI 312 (502) T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccccccCCCCCc---c----ccccccCCccccccCCCcee Confidence 76665554432 223345666777654211 1100000000 0 00011245455 48889998 Q ss_pred eecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhcccch----H------HH-------HHHHHHHHHHHHHHH-HHHHH Q lcl|Aclame:pro 217 VELKKDYSVLNKD-EIDLIKSELLTGYFMNENILLGTAS----Q------EQ-------QIYFYNSTIIPLLIQ-LEKEL 277 (378) Q Consensus 217 ~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~~~~~----e------~~-------~~~f~~~~l~P~~~~-ie~~l 277 (378) +.++.+.....+. ..+.+.+.||+.+|||.+.|.++++ . +. +..|...-+.|+.+. +++++ T Consensus 313 ~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~ 392 (502) T protein:vir:79 313 GMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARNYNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAV 392 (502) T ss_pred eeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 8887654334443 3477788999999999999876432 1 01 112445556665443 45555 Q ss_pred HhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC----------ee Q lcl|Aclame:pro 278 TYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD----------VY 347 (378) Q Consensus 278 ~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD----------~~ 347 (378) -.-.++... +.....+.+..+-.......|+..-+++...++++|+.|.-|+-+..|.+|-+--+ ++ T Consensus 393 l~G~i~~p~---~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~ 469 (502) T protein:vir:79 393 ASGVIRLPR---DLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGRNPDDVKRRRKAEIDENRKL 469 (502) T ss_pred HcCCCCCCC---CCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc Confidence 444433210 11112233444444556677999999999999999999999999989998853211 11 Q ss_pred eecccceecccc--hhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 348 IANLNAVAVKNL--SDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 348 ~~~~n~~~~~~~--~~~~~~~~~~~~~~e~~~e 378 (378) =++....|.... +..+...++..+++.+++| T Consensus 470 Gl~~~~~~~~~~~~~~~~~~~~e~~~~~~~~e~ 502 (502) T protein:vir:79 470 DLVFDTDPASDKGGSSAATKRQEPQHTDDQSEE 502 (502) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 122222221111 1111112223333333333 No 116 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.39 E-value=3.2e-14 Score=94.58 Aligned_cols=365 Identities=9% Similarity=0.037 Sum_probs=194.6 Q ss_pred CCccccccccccc-----------ccc--CCccceeec----------------------ccchhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRG-----------KLN--NDTQRVTAW----------------------QNEAVEYTSAFVTNIHNKIA 45 (378) Q Consensus 1 M~~f~~~~~~~~~-----------~~~--~~~~~~~~~----------------------~~~~~~~~~~~v~~~i~~ia 45 (378) |++.++.++.... .+. ........| +...+..+++++.++|+.+. T Consensus 8 ~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 87 (505) T protein:vir:96 8 PSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNPYAKRFYQLLK 87 (505) T ss_pred cchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 8888887663210 000 000000011 11124446788899999888 Q ss_pred hhhcc-CceEEEEecccc-cccccceeccCchHHHHHhccCCCC----CCHHHHHHHHHHHHHhcCCcEEEEEEeC---- Q lcl|Aclame:pro 46 NEITK-VEFNHVKYKKSD-VGSDTLISMAGSDLDEVLNWSPKGE----RNSMDFWRKVIKKLLSAPYVDLYAVFDD---- 115 (378) Q Consensus 46 ~~ia~-~p~~~~~~~~~~-~~~~~~~~~~~~~l~~lL~~~PN~~----~s~~~f~~~~~~~~ll~Gna~~~~~~~~---- 115 (378) +.+-. .-+.+.-..... ...+......=..+.+.+..+||.. ++.+++...++..++..|++|+..+++. T Consensus 88 ~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~~ 167 (505) T protein:vir:96 88 NNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLVREHRGYPNKW 167 (505) T ss_pred HHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEEEEeecCCCCc Confidence 77654 445443221110 0001000000012233344456643 6788899999999999999998765432 Q ss_pred ---------------------------------CCceEEEEeecC---------------CeEEEeeeEEEEEcccc--C Q lcl|Aclame:pro 116 ---------------------------------NTGELLDLLFAD---------------DKKEYKPEELVRLTSPF--Y 145 (378) Q Consensus 116 ---------------------------------~~g~~~~~~~~~---------------~~~~~~~~dvih~r~~~--~ 145 (378) ..|+++.||... ....+++++|||+..+. . T Consensus 168 ~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa~~vlH~f~~~r~g 247 (505) T protein:vir:96 168 GYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPADEIIHTFVPWRPH 247 (505) T ss_pred ceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccccCHhHhhhhhcccCCc Confidence 234455554311 11236778999996542 2 Q ss_pred CccccchHHHHHHHHH-----------HHHhcCCcceeeeeCCc-CCHHHHHHHHHHHHHHHHHhhccccccceeEecCC Q lcl|Aclame:pro 146 INEDTSILDNALASIQ-----------TKLEQGKLRGLLKINAF-LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNK 213 (378) Q Consensus 146 ~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 213 (378) -..|++.+...+..+. .+.-++.+.++|+.+.. ..+..... ... ....-..|.+..|..| T Consensus 248 Q~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~----~~~----~~~~l~pG~i~~L~pG 319 (505) T protein:vir:96 248 QNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDD----QGE----IVEEVEAGTYQLLPYG 319 (505) T ss_pred cccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCccccc----cCc----cccccCCceeeecCCC Confidence 3457776655544332 22334566677776432 11111000 000 0111235668889999 Q ss_pred ceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhcccch-----H------HH-------HHHHHHHHHHHHHHH-H Q lcl|Aclame:pro 214 TEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILLGTAS-----Q------EQ-------QIYFYNSTIIPLLIQ-L 273 (378) Q Consensus 214 ~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~~~~~-----e------~~-------~~~f~~~~l~P~~~~-i 273 (378) .+++.++.+.....+. ..+.+.+.||+.+|||.+.|.++++ . +. +..|....+.|+.+. + T Consensus 320 e~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l 399 (505) T protein:vir:96 320 IRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLI 399 (505) T ss_pred CeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999987664444443 3477789999999999998865432 1 11 123555667775554 5 Q ss_pred HHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCe------e Q lcl|Aclame:pro 274 EKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV------Y 347 (378) Q Consensus 274 e~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~------~ 347 (378) +.++-.-.++-. +.....+.+..+-.......|+..-+++...++++|+.|.-|+-++.|.+|-+--++ . T Consensus 400 ~~a~l~G~i~~p----~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~ 475 (505) T protein:vir:96 400 SMSLLTQALPLN----MVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDVFDEIAWEEQL 475 (505) T ss_pred HHHHHcCCcCCC----CccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHH Confidence 555554444321 111223344555555667779999999999999999999999988899988542211 1 Q ss_pred eecccceecccchhccCccCCCCCCCCCCC Q lcl|Aclame:pro 348 IANLNAVAVKNLSDLQGSRKDVTSTDETNN 377 (378) Q Consensus 348 ~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~ 377 (378) +.-.++.+.........+..+++....+|| T Consensus 476 ~~~~Gl~~~~~~~~~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 476 MRDKGVNPTPPEQESKDATTDEEDDSASDD 505 (505) T ss_pred HHHcCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 112222222211111222222222222233 No 117 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.31 E-value=2e-12 Score=84.77 Aligned_cols=368 Identities=10% Similarity=0.008 Sum_probs=182.5 Q ss_pred CCcccccccccc---------------ccccCCccc-eeec-------------------ccchhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSR---------------GKLNNDTQR-VTAW-------------------QNEAVEYTSAFVTNIHNKIA 45 (378) Q Consensus 1 M~~f~~~~~~~~---------------~~~~~~~~~-~~~~-------------------~~~~~~~~~~~v~~~i~~ia 45 (378) ||||++..++.. ++--....+ ...| +...+..+++++.+||+.+. T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 80 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQPLGADTSLQKSAVSMREQCRKLDEDHDLVTGLLDRLE 80 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 999998776421 010000000 0000 01123446788889999887 Q ss_pred hhhcc-CceEEEEecc--cccccccceeccCchHHHHHhccC--CCCCCHHHHHHHHHHHHHhcCCcEEEEEEe------ Q lcl|Aclame:pro 46 NEITK-VEFNHVKYKK--SDVGSDTLISMAGSDLDEVLNWSP--KGERNSMDFWRKVIKKLLSAPYVDLYAVFD------ 114 (378) Q Consensus 46 ~~ia~-~p~~~~~~~~--~~~~~~~~~~~~~~~l~~lL~~~P--N~~~s~~~f~~~~~~~~ll~Gna~~~~~~~------ 114 (378) +.|-. .-+.+.-+.. +....++..... ..+.+.+..++ .-.+|.+.+...++..++..|++|+.+.++ T Consensus 81 ~nvVG~~G~~i~p~~l~~d~~~a~~l~~~i-e~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~~ 159 (548) T protein:vir:95 81 ERVVGGSGIGVEPLPLRLDGSVHAELAMEI-RSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNYT 159 (548) T ss_pred HhccCccccceeeeecCCCHHHHHHHHHHH-HHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeeccccccc Confidence 77643 2222211111 000000000000 11222333222 224789999999999999999999876542 Q ss_pred ----------------------------------CCCceEEEEeecC-------------CeEEEeeeEEEEEcccc--C Q lcl|Aclame:pro 115 ----------------------------------DNTGELLDLLFAD-------------DKKEYKPEELVRLTSPF--Y 145 (378) Q Consensus 115 ----------------------------------~~~g~~~~~~~~~-------------~~~~~~~~dvih~r~~~--~ 145 (378) |..|+++.||... ....+++++|+|+..+. . T Consensus 160 ~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~~r~g 239 (548) T protein:vir:95 160 FATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYRKRIG 239 (548) T ss_pred CCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheecccccCCc Confidence 1234444454311 12457889999997543 2 Q ss_pred CccccchHHHHHHHHH-----------HHHhcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccee-EecCC Q lcl|Aclame:pro 146 INEDTSILDNALASIQ-----------TKLEQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLT-PVDNK 213 (378) Q Consensus 146 ~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g 213 (378) -..|++.+..++..+. .+.-++.+.++++.+..-... .......- .....-..|.++ .|..| T Consensus 240 Q~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~~-~~~~~~~~-----~~~~~~~pG~iv~~L~pG 313 (548) T protein:vir:95 240 QNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSYT-VEPGKDRK-----NRTIPIAPGMVFDDLEPG 313 (548) T ss_pred cccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccc-CCCCcccc-----cccccccCCccccccCCC Confidence 3457776655554332 122345566777654221100 00000000 000001234444 47888 Q ss_pred ceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhcccch----H------HH-------HHHHHHHHHHHHHH-HHH Q lcl|Aclame:pro 214 TEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILLGTAS----Q------EQ-------QIYFYNSTIIPLLI-QLE 274 (378) Q Consensus 214 ~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~~~~~----e------~~-------~~~f~~~~l~P~~~-~ie 274 (378) .+++.++.+.....+. ..+.+.+.||+.+|||.+.|.++++ . +. +..|...-+.|+.+ .++ T Consensus 314 e~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s~nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle 393 (548) T protein:vir:95 314 EDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYDGTYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQ 393 (548) T ss_pred ceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 8888887553333443 3467788999999999999876432 1 00 11244555666444 344 Q ss_pred HHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC---------- Q lcl|Aclame:pro 275 KELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG---------- 344 (378) Q Consensus 275 ~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gG---------- 344 (378) .++-.-.++-.. +.....+....+-.......|+..-+++...++++|+.|.-|+-++.|.+|-+-- T Consensus 394 ~a~l~G~i~lP~---~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~ 470 (548) T protein:vir:95 394 MYLLARKERLPA---DVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKAN 470 (548) T ss_pred HHHHcCCcCCCC---CCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH Confidence 454443332110 0111123344444445666799999999999999999999999888888874311 Q ss_pred Ceeeecccceec-----------ccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 345 DVYIANLNAVAV-----------KNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 345 D~~~~~~n~~~~-----------~~~~~~~~~~~~~~~~~e~~~e 378 (378) +++=++....|. +...+...+..-..+++|..+| T Consensus 471 ~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (548) T protein:vir:95 471 RAAGLVFSSDAYHQLVKSGMDPVEAVQKVYLGVGKMLTADEAREL 515 (548) T ss_pred HHcCCCCCCcccccccccccCCCCchhhhccccccccccchhHHh Confidence 111011111111 0000000111111233443333 No 118 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=99.28 E-value=3.2e-11 Score=78.10 Aligned_cols=355 Identities=11% Similarity=0.014 Sum_probs=179.4 Q ss_pred CCccccc--ccccccccc--CCccceeeccc----chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceecc Q lcl|Aclame:pro 1 MNLFGKV--VSFSRGKLN--NDTQRVTAWQN----EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMA 72 (378) Q Consensus 1 M~~f~~~--~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~ 72 (378) +|--+.. ..+. ..+. ..........+ +.+.-.-+.|.+|++.+...|.+++|.|.....+ +.. T Consensus 14 ~g~~~~~~~~~~~-~~~~~~e~~~~lr~~~~~~ly~~m~e~D~~i~s~l~~rk~av~~~~w~v~p~~~~----~e~---- 84 (469) T protein:vir:10 14 AGYVFGSGVVDGW-TVWDPFEQTPELQWPQSVAVYSRMDNEDSRVTSLLEAISLPIRSTPWRIRANGAS----DEV---- 84 (469) T ss_pred hhhhhhcccccch-hhccccccccccccccchHHHHHHHhhChHHHHHHHHHHHHHhcCCceEecCCCC----HHH---- Confidence 3332211 1110 0110 00000000011 1111124679999999999999999998532211 111 Q ss_pred CchHHHHHhc----cC--------CCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC----CceE--EEEee--------- Q lcl|Aclame:pro 73 GSDLDEVLNW----SP--------KGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN----TGEL--LDLLF--------- 125 (378) Q Consensus 73 ~~~l~~lL~~----~P--------N~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~----~g~~--~~~~~--------- 125 (378) ..-+.+.|.. .+ +-..++.+++..++...+.+|-++..++|+.. .|.. ..+.+ T Consensus 85 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~~l~~rp~~~i~~~ 164 (469) T protein:vir:10 85 TEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLRKLAPRPQWTISKF 164 (469) T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeeeeeeecCcccceee Confidence 1112222221 11 11236788888888888889999998887532 2332 11110 Q ss_pred ----cC-----------------------CeEEEeeeEEEEEc-cccCCc-cccchHHHHHHHHH----------HHH-h Q lcl|Aclame:pro 126 ----AD-----------------------DKKEYKPEELVRLT-SPFYIN-EDTSILDNALASIQ----------TKL-E 165 (378) Q Consensus 126 ----~~-----------------------~~~~~~~~dvih~r-~~~~~~-~~~~~~~~~~~~i~----------~~~-~ 165 (378) ++ ..+.+++...|+.+ .+.+++ .|.+++..+.-..- .+. . T Consensus 165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~gLlr~~~~~~~fK~~~~~~w~~f~Er 244 (469) T protein:vir:10 165 NVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKSILRSAYKHWLLKDKLLRIEAATAER 244 (469) T ss_pred eeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11 12234444544444 232222 25666665543221 111 2 Q ss_pred cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHH-HHHHHHHHHHHhCC Q lcl|Aclame:pro 166 QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDE-IDLIKSELLTGYFM 244 (378) Q Consensus 166 ~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~-~~~~~~~Ia~~fgV 244 (378) -|.|--+.+++...++++.+ .+.+...+...+.+++ ++++.|++++-+..+.+...... .++..++|+.++-- T Consensus 245 yG~P~~vgky~~~a~~~ek~----~l~~a~~~~~~g~~a~--~iip~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG 318 (469) T protein:vir:10 245 NGMGIPVGTASSATDEDEVR----KMAALARSVRGGINAG--VGLAQGQILELLGVSGNLPDIRRAIEGHDRSIALSGLA 318 (469) T ss_pred cCCcceEEecCCCCCHHHHH----HHHHHHHHHhcCCceE--EEccCCceEEEeecCCCchHHHHHHHHHHHHHHHHHhc Confidence 35555567777666665543 4444444444444544 45667777666654433333433 47777888876432 Q ss_pred CH-HHh--cccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHH Q lcl|Aclame:pro 245 NE-NIL--LGTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) Q Consensus 245 Pp-~~l--~~~~~-e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~ 320 (378) .- ..- +|+++ .+.........+.-.++.|++.||+.|+.+--.........+-+|.|+. . ..+.+..++.+.+ T Consensus 319 ~tlTs~~~gGS~a~~~vh~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~~~~~P~~~~~~--~-e~~~~~~a~~i~~ 395 (469) T protein:vir:10 319 HFLNLDGKGGSYALASVLEDPFTQAVHAYATSICRIANQHIIEDLVDINFGVDTPAPVLTFDP--I-GSRQDLTAAAVKL 395 (469) T ss_pred ccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecC--C-CCcHHHHHHHHHH Confidence 11 110 22332 2334556677788899999999999887653222211123334666653 2 2566788999999 Q ss_pred HHhCCCC-----CHHHHHHHhCCCCCCCCCeeeecc--cceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 321 NINGPIF-----TQNQLLVKMGEQPIEGGDVYIANL--NAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 321 ~~~~G~~-----t~NE~R~~~gl~p~~gGD~~~~~~--n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++..|++ +.+.+|+.+|+|+-..++....+. +..|.... .+ .+...++..+.. T Consensus 396 l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~ 455 (469) T protein:vir:10 396 LYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPAAVPNQSA----AP-ARTRSSGNADAR 455 (469) T ss_pred HHhcCCccCccccHHHHHHHhCCCCCCCCcccccchhcccCCCCCc----cc-cccCCCCCcccc Confidence 9999994 567789999999877776544332 11111110 01 111111111111 No 119 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=99.24 E-value=1.8e-10 Score=74.00 Aligned_cols=359 Identities=11% Similarity=0.051 Sum_probs=179.2 Q ss_pred CCcccccccccc--------------ccccCCcccee------ecc----cch-----hh----hhhHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MNLFGKVVSFSR--------------GKLNNDTQRVT------AWQ----NEA-----VE----YTSAFVTNIHNKIANE 47 (378) Q Consensus 1 M~~f~~~~~~~~--------------~~~~~~~~~~~------~~~----~~~-----~~----~~~~~v~~~i~~ia~~ 47 (378) ...+|+.+.... ........++| +.+ +.- ++ ..-+.|.+|++.+... T Consensus 5 ~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l~~Rk~a 84 (528) T protein:vir:10 5 VDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEMSKRKRA 84 (528) T ss_pred ECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHHHHHH Confidence 333444433210 00001111111 000 000 10 1345689999999999 Q ss_pred hccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceE--EEEee Q lcl|Aclame:pro 48 ITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGEL--LDLLF 125 (378) Q Consensus 48 ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~--~~~~~ 125 (378) |.+++|.|.....+.. .++ ..-.-+...|+.-| .+.+++.. +.+.+++|-+...++|+...|.. ..+.+ T Consensus 85 v~~~~w~I~p~~~~~~-~~~---~~a~~v~~~l~~~~----~f~~~i~~-~lda~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (528) T protein:vir:10 85 VLGLDWTIEPPRNASA-AEK---ADAEYLHELLLDLE----GIEDLMLD-CMDGVGHGYSAIELDWSLQGREWLPQAFDH 155 (528) T ss_pred HhcCCceEecCCCCCH-HHH---HHHHHHHHHHhCCc----cHHHHHHH-HHhhhhhcceeEEEEEeecCCceeEEEeee Confidence 9999998853221110 000 01122334443222 13333333 44566789998888775443332 22211 Q ss_pred ----------cC-----------CeEEEeeeE-EEEEccccCCc-cccchHHHHHHHHH----------HHH-hcCCcce Q lcl|Aclame:pro 126 ----------AD-----------DKKEYKPEE-LVRLTSPFYIN-EDTSILDNALASIQ----------TKL-EQGKLRG 171 (378) Q Consensus 126 ----------~~-----------~~~~~~~~d-vih~r~~~~~~-~~~~~~~~~~~~i~----------~~~-~~~~~~g 171 (378) .+ .+..+++.. |+|.-.+.++. .|.+++..+.-..- .+. .-|.|-- T Consensus 156 r~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (528) T protein:vir:10 156 RPQSWFQLNPDDQDELRLRDNSIAGEVLQPFGWIMHKPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPIR 235 (528) T ss_pred ecccceeeccCCCcEEeccCCCCCceeecCCCeEEEeecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCeE Confidence 00 123444444 44432222222 25666665543221 122 3466767 Q ss_pred eeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHh-- Q lcl|Aclame:pro 172 LLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENIL-- 249 (378) Q Consensus 172 il~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l-- 249 (378) +.+++...++++.+++.+.+.+ .. .+++.+++.+..+++.+.+....+......++..++|+.++- -..+- T Consensus 236 igky~~~a~~~ek~~L~~al~~----i~--~~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iL-GqtlTs~ 308 (528) T protein:vir:10 236 LGKYPPGTPDEEKVTLLRAVTG----LG--HAAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAIL-GGTLTSQ 308 (528) T ss_pred EEecCCCCCHHHHHHHHHHHHH----Hh--hCcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHHh-hhhhhcc Confidence 7778766666665555444432 21 234445554544555554432222222335777788887641 12221 Q ss_pred -----cccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccc----cceeeEEecchhhhhcCHHHHHHHHH Q lcl|Aclame:pro 250 -----LGTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGN----LYYERIIVDNQLFKFATLKELIDLYH 319 (378) Q Consensus 250 -----~~~~~-e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~----~~~~~~~~d~~~l~~~d~~~~~~~~~ 319 (378) +|+++ .+....-....+.-.++.|++.||+.|+.+--. ..++. ..+-+|.|+.. ...|.+++++.+. T Consensus 309 ~~~g~~gS~Alg~vh~~v~~di~~aDa~~i~~tln~~li~~l~~-~N~~~~~~~~~~p~~~~~~~--e~eDl~~~a~~~~ 385 (528) T protein:vir:10 309 TSESGGGAYALGQVHNEVRHDLLAADARQLAATLSRDLLWPLLV-LNRSGNLDARRAPRLVFDLK--DRADLAAMATSLP 385 (528) T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCccccceEEecCC--CcccHHHHHHHHH Confidence 12222 122344556778889999999999988654322 22221 12345666543 6678899999999 Q ss_pred HHHhCCC-CCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCC----CCC-CCCCCCC Q lcl|Aclame:pro 320 ENINGPI-FTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKD----VTS-TDETNNQ 378 (378) Q Consensus 320 ~~~~~G~-~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~----~~~-~~e~~~e 378 (378) +++..|+ ++..++|+.+|+|.-..|+.+..+....+............. ..+ ...+..+ T Consensus 386 ~L~~~G~~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (528) T protein:vir:10 386 PLVKLGVQVPVNWVQEQLGIPLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQEA 450 (528) T ss_pred HHHhCCCCCCHHHHHHHhCCCCCCCCcccccCCCcccccccCcccccccccccccccccccccch Confidence 9999998 999999999999877777776655443332221111111110 000 1111111 No 120 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.24 E-value=2.4e-12 Score=84.31 Aligned_cols=378 Identities=8% Similarity=-0.040 Sum_probs=181.1 Q ss_pred CCcc------ccccc-ccccccc---CCccceee--------------------cccchhhhhhHHHHHHHHHHHhhhcc Q lcl|Aclame:pro 1 MNLF------GKVVS-FSRGKLN---NDTQRVTA--------------------WQNEAVEYTSAFVTNIHNKIANEITK 50 (378) Q Consensus 1 M~~f------~~~~~-~~~~~~~---~~~~~~~~--------------------~~~~~~~~~~~~v~~~i~~ia~~ia~ 50 (378) |+.= ++... ...++.. ...-.... .+...+..+++++.+||+.+.+.|-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvVG 80 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIVG 80 (530) T ss_pred CccceeecCccccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhC Confidence 3221 11110 0000000 00000111 11223455778899999999988866 Q ss_pred CceEEEEeccccc-cccc-ceeccCch---HHHHHhccCCC------CCCHHHHHHHHHHHHHhcCCcEEEEEEeCC--- Q lcl|Aclame:pro 51 VEFNHVKYKKSDV-GSDT-LISMAGSD---LDEVLNWSPKG------ERNSMDFWRKVIKKLLSAPYVDLYAVFDDN--- 116 (378) Q Consensus 51 ~p~~~~~~~~~~~-~~~~-~~~~~~~~---l~~lL~~~PN~------~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~--- 116 (378) .-|.+.-+..... ..+. .-..-... +.+.+...||. .+|.+++...++..++..|++|+.++++.. T Consensus 81 ~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~g~ 160 (530) T protein:vir:38 81 SFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWDSDSTR 160 (530) T ss_pred CCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeeccCCCC Confidence 6666533211000 0000 00000112 22333345653 468899999999999999999998765322 Q ss_pred ----------------------------------CceEEEEeecC-----C----------eEEEeeeEEEEEcccc--C Q lcl|Aclame:pro 117 ----------------------------------TGELLDLLFAD-----D----------KKEYKPEELVRLTSPF--Y 145 (378) Q Consensus 117 ----------------------------------~g~~~~~~~~~-----~----------~~~~~~~dvih~r~~~--~ 145 (378) .|+++.||... . ...++.++|||+..+. . T Consensus 161 ~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~~~r~g 240 (530) T protein:vir:38 161 LFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFEPMEDG 240 (530) T ss_pred ccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeeccccCCC Confidence 24444444311 0 1123455899997543 3 Q ss_pred CccccchHHHHHHHHH-----------HHHhcCCcceeeeeCCcCC-----------HHHHHHHHHHHHHH---HHHhhc Q lcl|Aclame:pro 146 INEDTSILDNALASIQ-----------TKLEQGKLRGLLKINAFLD-----------IDNTQEYREKALTT---IKNMQE 200 (378) Q Consensus 146 ~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~~~l~-----------~~~~~~~~~~~~~~---~~~~~~ 200 (378) -..|++.+..++..+. .+.-++.+.++|+.+..-. ++............ .....- T Consensus 241 Q~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (530) T protein:vir:38 241 QTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPV 320 (530) T ss_pred cccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccce Confidence 3557776665554332 1223455566665432110 00000000000000 000000 Q ss_pred cccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHHhCCCHHHhcccch-----H------HH-------HHHH Q lcl|Aclame:pro 201 GSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLGTAS-----Q------EQ-------QIYF 261 (378) Q Consensus 201 ~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~~~~-----e------~~-------~~~f 261 (378) .=..|.+..|..|.+++.++.+.....+ ..++.+.+.||+.+|||.+.|.++++ . +. +..| T Consensus 321 ~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~ 400 (530) T protein:vir:38 321 RLGGARVPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKFV 400 (530) T ss_pred eccCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 0135567888999998888765433444 33577889999999999999865432 1 00 1123 Q ss_pred HHHHHHHHHH-HHHHHHHhhcCChhHHhh-h--ccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhC Q lcl|Aclame:pro 262 YNSTIIPLLI-QLEKELTYKLISTNRRRV-V--KGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMG 337 (378) Q Consensus 262 ~~~~l~P~~~-~ie~~l~~~Ll~~~~~~~-g--~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g 337 (378) ...-+.|+.. .+++++..-.++-..... . .....+....+-.......|+..-+++...++++|+.|.-++-++.| T Consensus 401 ~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G 480 (530) T protein:vir:38 401 ASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRG 480 (530) T ss_pred HHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcC Confidence 3434455444 455555554443110000 0 00001223333344556679999999999999999999999988899 Q ss_pred CCCCCCCCe------eeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 338 EQPIEGGDV------YIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 338 l~p~~gGD~------~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .+|-+--++ .+.-.++.+...............+.++.++. T Consensus 481 ~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~d~~ 527 (530) T protein:vir:38 481 DDYQEIFAQQVRESMERRAAGLNPPAWAAAAFEAGVKKSNEEEQDGA 527 (530) T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCCCCCCCCCCC Confidence 988532111 11111221111111111111111111111111 No 121 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.22 E-value=7.3e-12 Score=81.65 Aligned_cols=367 Identities=11% Similarity=0.004 Sum_probs=182.8 Q ss_pred CCccccccc-ccccc--------cc--CCccceeecc------------------cchhhhhhHHHHHHHHHHHhhhccC Q lcl|Aclame:pro 1 MNLFGKVVS-FSRGK--------LN--NDTQRVTAWQ------------------NEAVEYTSAFVTNIHNKIANEITKV 51 (378) Q Consensus 1 M~~f~~~~~-~~~~~--------~~--~~~~~~~~~~------------------~~~~~~~~~~v~~~i~~ia~~ia~~ 51 (378) |||+++... ...+. +. +.+.+...|. ...+..+++++.+||+.+.+.+-.. T Consensus 1 m~~~~~~~~a~~~~~~~~~~~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~~vVG~ 80 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATWVAAAVGN 80 (495) T ss_pred CCcccccccccchhhhhHHHhhhhhccccCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC Confidence 999987532 11100 00 0011111111 1124456788899999998888554 Q ss_pred ceEEEEecccccccccceeccCchHHHHHhccC--CCCCCHHHHHHHHHHHHHhcCCcEEEEEEeC-------------- Q lcl|Aclame:pro 52 EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSP--KGERNSMDFWRKVIKKLLSAPYVDLYAVFDD-------------- 115 (378) Q Consensus 52 p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~P--N~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~-------------- 115 (378) -|..--+..+ . ...... ..+.+.+..++ .-.++.+.+...++..++..|++|+.++++. T Consensus 81 Gi~p~~~~~~-~---~~~~~i-e~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~lqli 155 (495) T protein:vir:10 81 GLTPRWRMKE-Q---ELRQEL-QELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQII 155 (495) T ss_pred CcccccCCch-H---HHHHHH-HHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceEEEEe Confidence 5543222111 0 000001 11222233222 2247889999999999999999998765321 Q ss_pred ---------------------------CCceEEEEeec-----C--------CeEEEeeeEEEEEcccc-CCccccchHH Q lcl|Aclame:pro 116 ---------------------------NTGELLDLLFA-----D--------DKKEYKPEELVRLTSPF-YINEDTSILD 154 (378) Q Consensus 116 ---------------------------~~g~~~~~~~~-----~--------~~~~~~~~dvih~r~~~-~~~~~~~~~~ 154 (378) ..|+++.||.. + ..+.+++++|+|+.... .-..|++.+. T Consensus 156 epd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~~r~gQ~RGis~la 235 (495) T protein:vir:10 156 EPDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTVLTVRSDAGAPWFQ 235 (495) T ss_pred chhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccccCCCcccCcchhH Confidence 12444444421 0 12457889999995321 2233555443 Q ss_pred HHHH--HH--------HHHHhcCCcceeeeeCCcCCHHHHHHHHH-HHHHHHHHhhccccccceeEecCCceeeecccch Q lcl|Aclame:pro 155 NALA--SI--------QTKLEQGKLRGLLKINAFLDIDNTQEYRE-KALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDY 223 (378) Q Consensus 155 ~~~~--~i--------~~~~~~~~~~gil~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~ 223 (378) .+.. -+ ..+.-++.+.++++.+.. ++....... .-.+.-......-..|.+..|..|.+++.++.+. T Consensus 236 ~i~~l~~l~~y~dael~~a~i~A~~~~fi~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~ 313 (495) T protein:vir:10 236 LLLRLNELDQYEDAELVRKKTAALFAAFIQEATA--DSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPAD 313 (495) T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhheeeeecCCC--ccccccccCccccccCcccceecCCceeeecCCCCeeeeeCCCC Confidence 2221 11 112234556666665321 100000000 0000000001112356788899999999887654 Q ss_pred hhhhHH-HHHHHHHHHHHHhCCCHHHhcccch-----H------HHHH--------HHHHHHHHHHHHH-HHHHHHhhcC Q lcl|Aclame:pro 224 SVLNKD-EIDLIKSELLTGYFMNENILLGTAS-----Q------EQQI--------YFYNSTIIPLLIQ-LEKELTYKLI 282 (378) Q Consensus 224 ~~~~~~-~~~~~~~~Ia~~fgVPp~~l~~~~~-----e------~~~~--------~f~~~~l~P~~~~-ie~~l~~~Ll 282 (378) ....+. ..+.+.+.||+.+|||.+.|.++++ . +.++ -+...-+.|+.+. ++.++-.-.+ T Consensus 314 p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i 393 (495) T protein:vir:10 314 VGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAV 393 (495) T ss_pred CCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC Confidence 334443 3577788999999999999975432 1 1111 1333445664443 4445444332 Q ss_pred ChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC----------eeeeccc Q lcl|Aclame:pro 283 STNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD----------VYIANLN 352 (378) Q Consensus 283 ~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD----------~~~~~~n 352 (378) +...... ....+.+..+-.......|+..-+++...++++|+.|.-|+-+..|.+|-+--+ ++=++.+ T Consensus 394 ~~p~~~~--~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~ 471 (495) T protein:vir:10 394 VIPDYLQ--RRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGYDMEELFDMISDANQLIDEYDLRLD 471 (495) T ss_pred CCCCchh--hhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCC Confidence 2110000 001122333334455667999999999999999999999998889998853211 1111111 Q ss_pred ceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 353 AVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .-|.. ....+......+.++++|| T Consensus 472 ~~p~~--~~~~~~~~~~~~~~~~~~e 495 (495) T protein:vir:10 472 SDPRY--VNGSGAEQKSVMEAALNNE 495 (495) T ss_pred CCCCc--CCCccCCCCCCCCCCCCCC Confidence 11111 1111122233344445555 No 122 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=99.21 E-value=4e-10 Score=72.12 Aligned_cols=361 Identities=10% Similarity=0.018 Sum_probs=178.1 Q ss_pred CCccccccccc--------------cccccCCcccee----------ecccch-----hh----hhhHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MNLFGKVVSFS--------------RGKLNNDTQRVT----------AWQNEA-----VE----YTSAFVTNIHNKIANE 47 (378) Q Consensus 1 M~~f~~~~~~~--------------~~~~~~~~~~~~----------~~~~~~-----~~----~~~~~v~~~i~~ia~~ 47 (378) ..-+|+.+... +........++| +..+.. ++ ..-+.|.+|++.+... T Consensus 5 ~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l~~Rk~a 84 (526) T protein:vir:99 5 VDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRA 84 (526) T ss_pred ECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHHHHHH Confidence 22334433211 000011111111 000010 11 1246789999999999 Q ss_pred hccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE--EEee Q lcl|Aclame:pro 48 ITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL--DLLF 125 (378) Q Consensus 48 ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~--~~~~ 125 (378) |.+++|.|.....++. .++ ....-+...|+..| .+.+++..++ +.+.+|-+...++|+...|... .+.+ T Consensus 85 v~~~~w~I~p~~~~~~-~~~---~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Eivw~~~~g~~~~~~l~~ 155 (526) T protein:vir:99 85 ILGLDWAVEPPRNASA-AEK---ADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) T ss_pred HhCCCceEecCCCCCH-HHH---HHHHHHHHHHhccc----CHHHHHHHHH-HhhhhcceeEEEEEeecCCceeEEEeee Confidence 9999998853221111 111 11123444454333 2455555544 5677999988888765444422 2221 Q ss_pred ----------cC-----------CeEEEeee-EEEEEccccCCc-cccchHHHHHHHH----------HHHH-hcCCcce Q lcl|Aclame:pro 126 ----------AD-----------DKKEYKPE-ELVRLTSPFYIN-EDTSILDNALASI----------QTKL-EQGKLRG 171 (378) Q Consensus 126 ----------~~-----------~~~~~~~~-dvih~r~~~~~~-~~~~~~~~~~~~i----------~~~~-~~~~~~g 171 (378) .+ .+..+++. =|+|...+.+++ .|.+++..+.-.. ..+. .-|.|-- T Consensus 156 r~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (526) T protein:vir:99 156 RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) T ss_pred ecccceeeccCCCcEEEecCCCCCceeecCCCeEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceE Confidence 11 12334444 345543332222 3556665553221 1122 3467767 Q ss_pred eeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHh-CCCHHH-h Q lcl|Aclame:pro 172 LLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGY-FMNENI-L 249 (378) Q Consensus 172 il~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~f-gVPp~~-l 249 (378) +.+++...++++.+++.+.+. +.. .+++.+++.+..+++.+.+....+......++..++|+.++ |=-... . T Consensus 236 igky~~~a~~~ek~~L~~av~----~i~--~d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~ 309 (526) T protein:vir:99 236 LGKYPPGTADEEKATLLRAVT----GLG--HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT 309 (526) T ss_pred EEecCCCCCHHHHHHHHHHHH----HHh--hCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 777776556665555444443 221 23444544444455555433222222233477788888764 321111 1 Q ss_pred --c--ccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcc---ccceeeEEecchhhhhcCHHHHHHHHHHH Q lcl|Aclame:pro 250 --L--GTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG---NLYYERIIVDNQLFKFATLKELIDLYHEN 321 (378) Q Consensus 250 --~--~~~~-e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~---~~~~~~~~~d~~~l~~~d~~~~~~~~~~~ 321 (378) + |+++ .+....-....+.-.++.|++.||+.|+.+--...+.. ...+-++.|+. ....|.+.+++.+.++ T Consensus 310 ~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~--~e~eDl~~~a~~~~~L 387 (526) T protein:vir:99 310 SQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQADITSMAQSIPAL 387 (526) T ss_pred ccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCC--CCcccHHHHHHHHHHH Confidence 1 1221 12234445666788899999999998875543222111 11234566654 3678899999999999 Q ss_pred HhCCC-CCHHHHHHHhCCCCCCCCCeeeecccceecccchhcc--CccCCCCCCCCCCC-C Q lcl|Aclame:pro 322 INGPI-FTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQ--GSRKDVTSTDETNN-Q 378 (378) Q Consensus 322 ~~~G~-~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~--~~~~~~~~~~e~~~-e 378 (378) +..|+ ++..++|+.+|+|.-..++.++.|....+........ ............+. . T Consensus 388 ~~~G~~i~~~~i~e~~Gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) T protein:vir:99 388 VNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) T ss_pred HhCCCccCHHHHHHHhCCCCCCCcccccCCCCCCcccccccccccccccccccccCcchhh Confidence 99998 8999999999998776677665443221111111000 00000110011111 1 No 123 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.19 E-value=4.8e-12 Score=82.61 Aligned_cols=377 Identities=8% Similarity=-0.004 Sum_probs=180.9 Q ss_pred CCc--cc------ccccc--cccccc---CCcccee--------------------ecccchhhhhhHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MNL--FG------KVVSF--SRGKLN---NDTQRVT--------------------AWQNEAVEYTSAFVTNIHNKIANE 47 (378) Q Consensus 1 M~~--f~------~~~~~--~~~~~~---~~~~~~~--------------------~~~~~~~~~~~~~v~~~i~~ia~~ 47 (378) |+. +- ...+. ..++.. ...-.+. ..+...+..+++++.+||+.+.+. T Consensus 1 ~~~p~~~~~~~~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~n 80 (533) T protein:vir:34 1 MKTPTIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANAIQLHQDH 80 (533) T ss_pred CCCchhhhhhcccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH Confidence 111 00 00000 000000 0000000 111223455778899999999888 Q ss_pred hccCceEEEEecc------cccccccceeccCchHHHHHhccCCC------CCCHHHHHHHHHHHHHhcCCcEEEEEEeC Q lcl|Aclame:pro 48 ITKVEFNHVKYKK------SDVGSDTLISMAGSDLDEVLNWSPKG------ERNSMDFWRKVIKKLLSAPYVDLYAVFDD 115 (378) Q Consensus 48 ia~~p~~~~~~~~------~~~~~~~~~~~~~~~l~~lL~~~PN~------~~s~~~f~~~~~~~~ll~Gna~~~~~~~~ 115 (378) +-..-|.+--+.. .+...+...... ..+.+.+..+|+. .++.+++...++..++..|++|+.+.++. T Consensus 81 vVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~i-e~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~ 159 (533) T protein:vir:34 81 IVGSFFRLSHRPSWRYLGIGEEEARAFSREV-EAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWDT 159 (533) T ss_pred hhCCCceeeeccchhhcCCChhHHHHHHHHH-HHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEEeeecc Confidence 8655665432210 000000000000 1123333344553 45889999999999999999999765432 Q ss_pred -------------------------------------CCceEEEEeecC----C-----------eEEEeeeEEEEEccc Q lcl|Aclame:pro 116 -------------------------------------NTGELLDLLFAD----D-----------KKEYKPEELVRLTSP 143 (378) Q Consensus 116 -------------------------------------~~g~~~~~~~~~----~-----------~~~~~~~dvih~r~~ 143 (378) ..|+++.||... + ...++.++|||+..+ T Consensus 160 ~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~VlH~f~~ 239 (533) T protein:vir:34 160 SSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPGGRASFIHVFEP 239 (533) T ss_pred CCCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeeccChhHeeeeccc Confidence 234444444310 0 112345789999754 Q ss_pred c--CCccccchHHHHHHHHH-----------HHHhcCCcceeeeeCCcCC-------HHHHHHHHHHHHH---HHHHhhc Q lcl|Aclame:pro 144 F--YINEDTSILDNALASIQ-----------TKLEQGKLRGLLKINAFLD-------IDNTQEYREKALT---TIKNMQE 200 (378) Q Consensus 144 ~--~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~~~l~-------~~~~~~~~~~~~~---~~~~~~~ 200 (378) . .-..|++.+..++..+. .+.-++.+.++++.+..-. ........+.+.. ....... T Consensus 240 ~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (533) T protein:vir:34 240 VEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYA 319 (533) T ss_pred cCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccccccccccchhhhhccC Confidence 3 23557777665554432 2233455666666542100 0000000111111 0000001 Q ss_pred c----ccccceeEecCCceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhcccch-----HH-------------H Q lcl|Aclame:pro 201 G----SSYNGLTPVDNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILLGTAS-----QE-------------Q 257 (378) Q Consensus 201 ~----~~~~~~~~l~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~~~~~-----e~-------------~ 257 (378) + =..|.+..|..|.+++.++.+.....+. ..+.+.+.||+.+|||.+.|.++++ .. . T Consensus 320 ~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~ 399 (533) T protein:vir:34 320 AAPVRLGGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGR 399 (533) T ss_pred cceeeccCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHH Confidence 0 1345678889999988887654444443 3577789999999999999976532 10 0 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhhcCChhHHhh-h--ccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHH Q lcl|Aclame:pro 258 QIYFYNSTIIPLLIQ-LEKELTYKLISTNRRRV-V--KGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLL 333 (378) Q Consensus 258 ~~~f~~~~l~P~~~~-ie~~l~~~Ll~~~~~~~-g--~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R 333 (378) +..|....+.|+.+. +++++..-.++-..... . .....+.+..+-.......|+..-+++...++++|+.|.-|+- T Consensus 400 q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~ 479 (533) T protein:vir:34 400 RKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKEC 479 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHH Confidence 112444455665554 45555443332110000 0 0001122344444556777999999999999999999999999 Q ss_pred HHhCCCCCCCCCee------eecccceecccchhccC-ccCCCCCCCCCCCC Q lcl|Aclame:pro 334 VKMGEQPIEGGDVY------IANLNAVAVKNLSDLQG-SRKDVTSTDETNNQ 378 (378) Q Consensus 334 ~~~gl~p~~gGD~~------~~~~n~~~~~~~~~~~~-~~~~~~~~~e~~~e 378 (378) ++.|.+|-+--+++ +.-.++.+......... +..+..+.+..++. T Consensus 480 a~~G~D~~ev~~q~a~e~~~~~~~gl~~~~~~~~~~~s~~~~~~~~~~~~~~ 531 (533) T protein:vir:34 480 AKRGDDYQEIFAQQVRETMERRAAGLKPPAWAAAAFESGLRQSTEEEKSDSR 531 (533) T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcCccCCCCCCCCCCcccCC Confidence 99999885432111 11111111111100000 11111111111222 No 124 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=99.15 E-value=1.2e-09 Score=69.54 Aligned_cols=361 Identities=10% Similarity=0.004 Sum_probs=174.8 Q ss_pred CCccccccccc--------------cccccCCcccee------ecc----cc-----hhh----hhhHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MNLFGKVVSFS--------------RGKLNNDTQRVT------AWQ----NE-----AVE----YTSAFVTNIHNKIANE 47 (378) Q Consensus 1 M~~f~~~~~~~--------------~~~~~~~~~~~~------~~~----~~-----~~~----~~~~~v~~~i~~ia~~ 47 (378) ..-+|+..... +........++| ..+ +. .++ ..-+.|.+|+..+... T Consensus 5 ~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l~~Rk~a 84 (526) T protein:vir:79 5 VDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRA 84 (526) T ss_pred eCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHHHHHH Confidence 22233332211 001111111111 000 10 011 1235689999999999 Q ss_pred hccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE--EEee Q lcl|Aclame:pro 48 ITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL--DLLF 125 (378) Q Consensus 48 ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~--~~~~ 125 (378) |.+++|.|.....+.. .++ ..-.-+...|+..| .+.+++..+ .+.+.+|-+...++|+...|... .+.+ T Consensus 85 v~~~~w~I~p~~~~~~-~~~---~~a~~v~~~l~~~~----~~~~~i~~~-ldA~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) T protein:vir:79 85 ILGLDWAVEPPRNASA-AEK---ADADYLHELLLDLE----GLEDLLLDA-LDGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) T ss_pred HhCCCceEecCCCCCh-HHH---HHHHHHHHHHhccc----CHHHHHHHH-HhhhhhcceeEEEEEeecCCceeEEEeee Confidence 9999998853221111 000 11122444454333 244555543 34667899988888765444422 1211 Q ss_pred ----------cC-----------CeEEEeeeE-EEEEccccCCc-cccchHHHHHHHH----------HHHH-hcCCcce Q lcl|Aclame:pro 126 ----------AD-----------DKKEYKPEE-LVRLTSPFYIN-EDTSILDNALASI----------QTKL-EQGKLRG 171 (378) Q Consensus 126 ----------~~-----------~~~~~~~~d-vih~r~~~~~~-~~~~~~~~~~~~i----------~~~~-~~~~~~g 171 (378) .+ .++.+++.. |+|.....+++ .+.+++..+.-.. ..+. .-|.|-- T Consensus 156 r~~~~F~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~~ 235 (526) T protein:vir:79 156 RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) T ss_pred ecccceEeccCCCcEEEecCCCCCceeecCCceEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceE Confidence 11 123344443 34432222222 2556655443221 1121 2467767 Q ss_pred eeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHh-CCCHHH-h Q lcl|Aclame:pro 172 LLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGY-FMNENI-L 249 (378) Q Consensus 172 il~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~f-gVPp~~-l 249 (378) +.+++...++++.+++.+.+. +.. .+++.+++-+..+++.+.+....+......++..++|+.+. |=-... . T Consensus 236 igky~~~a~~~ek~~L~~av~----~i~--~da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~ 309 (526) T protein:vir:79 236 LGKYPPGTADEEKATLLRAVT----GLG--HAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTT 309 (526) T ss_pred EEecCCCCCHHHHHHHHHHHH----HHh--cCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 777776556665444444433 321 23444444444445555433222222233477778888763 322111 1 Q ss_pred --c--ccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcc---ccceeeEEecchhhhhcCHHHHHHHHHHH Q lcl|Aclame:pro 250 --L--GTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG---NLYYERIIVDNQLFKFATLKELIDLYHEN 321 (378) Q Consensus 250 --~--~~~~-e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~---~~~~~~~~~d~~~l~~~d~~~~~~~~~~~ 321 (378) + |+++ .+....-....+.-.++.|++.||+.|+.+--...+.. ...+-++.|+. -...|.+++++.+.++ T Consensus 310 ~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~--~e~eDl~~~a~~~~~L 387 (526) T protein:vir:79 310 SQSGGGAFALGQVHNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDL--REQADITSMAQSIPAL 387 (526) T ss_pred ccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCC--CCcccHHHHHHHHHHH Confidence 1 1221 12234455677888999999999998876543222111 11234566654 3678899999999999 Q ss_pred HhCCC-CCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 322 INGPI-FTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 322 ~~~G~-~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +..|+ ++..++|+.+|+|.-..++.++.|...........................+ T Consensus 388 ~~~G~~i~~~~i~e~~gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (526) T protein:vir:79 388 VNVGLEIPSAWVYDKLGIPQPAKNEPVLRPAAQPAILSRQHGQRVAALATIVGPRYGD 445 (526) T ss_pred HhCCCcCCHHHHHHHhCCCCCCCchhhccccCCccccccccccccccccccccccCch Confidence 99998 8999999999997665666655443211110000000000000000111111 No 125 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=99.11 E-value=1e-09 Score=69.87 Aligned_cols=349 Identities=10% Similarity=0.006 Sum_probs=168.7 Q ss_pred CCcccc---cccc---------------------ccccccCCcccee-ec-----ccchhhhhhHHHHHHHHHHHhhhcc Q lcl|Aclame:pro 1 MNLFGK---VVSF---------------------SRGKLNNDTQRVT-AW-----QNEAVEYTSAFVTNIHNKIANEITK 50 (378) Q Consensus 1 M~~f~~---~~~~---------------------~~~~~~~~~~~~~-~~-----~~~~~~~~~~~v~~~i~~ia~~ia~ 50 (378) =++++. .+.+ +.+........+. +. ..+.+ ..-+.|.+|++.+...|.+ T Consensus 3 ~~i~~~~g~p~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~iLr~~~~~~~~y~~m-~~D~~i~s~l~~Rk~av~~ 81 (491) T protein:vir:10 3 KGLWVSPTEFVTFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYREL-RADAHVGGCVRRRKAAVKA 81 (491) T ss_pred CceeCCCCCccCcccCChHHHHHHHhhhcccccccccCCccchHHHHHhcCCCHHHHHHH-hhChHHHHHHHHHHHHHhC Confidence 011111 1100 0000000000000 00 00111 2356789999999999999 Q ss_pred CceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE--EEee--- Q lcl|Aclame:pro 51 VEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL--DLLF--- 125 (378) Q Consensus 51 ~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~--~~~~--- 125 (378) ++|.|.....+ .. ....+.+.|. ++ .+.+++..+. +.+.+|-+...++|+...|... .+.+ T Consensus 82 ~~w~i~~~~~~-----~~---~~e~v~e~l~-~~----~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 147 (491) T protein:vir:10 82 LEWGLDRGKAK-----SR---VAKSIADVFA-DL----DLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPA 147 (491) T ss_pred CCcEEecCCCC-----HH---HHHHHHHHHh-cC----CHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeecc Confidence 99998532211 11 1233555554 33 4666777664 6778999998888765444422 2211 Q ss_pred -------cC-----------CeEEEeeeEEEEEcc-ccCC-ccccchHHHHHHHHH----------HHH-hcCCcceeee Q lcl|Aclame:pro 126 -------AD-----------DKKEYKPEELVRLTS-PFYI-NEDTSILDNALASIQ----------TKL-EQGKLRGLLK 174 (378) Q Consensus 126 -------~~-----------~~~~~~~~dvih~r~-~~~~-~~~~~~~~~~~~~i~----------~~~-~~~~~~gil~ 174 (378) .+ .+..+++...|+.+. +.++ -.|.+.+..+.-..- .+. .-|.|--+.+ T Consensus 148 ~~f~~d~~~~l~~~~~~~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igk 227 (491) T protein:vir:10 148 DWFVYDPENQLRFRSKDHWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGK 227 (491) T ss_pred cceeeccCCceEEecCCCCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe Confidence 00 123455555555543 2222 225566655543221 111 2466777778 Q ss_pred eCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-H-HHHHHHHHHHHHH-hCCCHHH-hc Q lcl|Aclame:pro 175 INAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-K-DEIDLIKSELLTG-YFMNENI-LL 250 (378) Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~-~~~~~~~~~Ia~~-fgVPp~~-l~ 250 (378) ++...++++.+++.+.+.+ . +.+++.+++.+..+++.+.+.+....+ . +..++..++|+.+ +|=...- -+ T Consensus 228 y~~~a~~~ek~~l~~al~~----~--~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~~~ 301 (491) T protein:vir:10 228 HPRSASDGEKNLLLDCLED----M--VQDAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALLGQNQTTEAT 301 (491) T ss_pred cCCCCCHHHHHHHHHHHHH----H--hcCcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCcc Confidence 8776676665555444433 2 133444444444445555443222222 2 3346777787765 2211000 01 Q ss_pred ccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCC-CC Q lcl|Aclame:pro 251 GTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPI-FT 328 (378) Q Consensus 251 ~~~~-e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~-~t 328 (378) |+++ .+....-...-+.-.++.|++.+|+ |+.+--. ..++...+.+|.|+.. ..+.+.+++.+.+++..|+ ++ T Consensus 302 gs~a~~~vh~~v~~di~~~D~~~i~~tln~-li~~l~~-~N~~~~~~p~f~~~~~---~e~~~~~a~~~~~L~~~G~~i~ 376 (491) T protein:vir:10 302 STRASAQAGLEVTDDIRDGDKAVVSEAMNM-LIRWICD-LNFDGADRPVFDMWEQ---EQVDEIQAGRDQKLTQAGARFT 376 (491) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcCCCCCcceEEecCc---CchhHHHHHHHHHHHhCCCcCC Confidence 2222 1223344466677788888888885 5543222 2222333456666542 2344788999999999998 89 Q ss_pred HHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 329 QNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 329 ~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ..++|+.+|+|+-+.++.........+ ......+.....+.++.+.. T Consensus 377 ~~~i~e~~Gip~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~ 423 (491) T protein:vir:10 377 PAYFKRAYNLQDGDLDERPLPVSAVDT---VGAASFAEFEAPDQDALDAA 423 (491) T ss_pred HHHHHHHhCCCCCCcCccccccCCCCC---cccccccccCCCCCCchHHH Confidence 999999999997655554321111000 00000011111111111111 No 126 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=99.10 E-value=2.2e-09 Score=68.06 Aligned_cols=345 Identities=8% Similarity=-0.050 Sum_probs=171.8 Q ss_pred CCccccccccccccccCCcccee--ecccchhh----hhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVT--AWQNEAVE----YTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~ 74 (378) .-++. .+..+..... ..+. +..+.... ..-+.|.+|++.+...|.+++|.+.... +...+.. .-. T Consensus 17 ~d~~~---~~~~~l~~~~-~~il~~a~~g~~~~y~~l~~D~~i~s~l~~rk~av~~~~w~i~p~~--~~~~~~~---~ae 87 (488) T protein:vir:99 17 RDITR---PFISGLQVPN-DSILQRRGGNDLRVYEEILSDAQVKTVWGQRQLAVVSREWKVEAGG--DRPIDQA---AAE 87 (488) T ss_pred hhhhc---cccCCCCCCC-hHHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHHhcCCceEEcCC--CChHHHH---HHH Confidence 11111 0111100001 1111 11111111 2346789999999999999999985321 1111110 112 Q ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE--EEee--------c-----------C--CeEE Q lcl|Aclame:pro 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL--DLLF--------A-----------D--DKKE 131 (378) Q Consensus 75 ~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~--~~~~--------~-----------~--~~~~ 131 (378) -+.+.|+ ++ .+.+++..+. +.+.+|-++..++|+...|... .+.+ + + .+.. T Consensus 88 ~v~~~l~-~~----~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~~~~l~~~~~~~~~~g~~ 161 (488) T protein:vir:99 88 HLEQQLQ-RV----GWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYDQDGGLRLLTPNNMFEGEP 161 (488) T ss_pred HHHHHHh-CC----CHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeeecccceeecCCCceEEeccCCCCCccc Confidence 3444453 33 5666777665 5677999998888764444422 2211 1 1 1233 Q ss_pred Eeee--EEEEEccccCCc-cccchHHHHHHHHH----------HHH-hcCCcceeeeeCC-cCCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 132 YKPE--ELVRLTSPFYIN-EDTSILDNALASIQ----------TKL-EQGKLRGLLKINA-FLDIDNTQEYREKALTTIK 196 (378) Q Consensus 132 ~~~~--dvih~r~~~~~~-~~~~~~~~~~~~i~----------~~~-~~~~~~gil~~~~-~l~~~~~~~~~~~~~~~~~ 196 (378) ++.. =++|...+.+++ .|.+++..+.-..- .+. .-|.|--+.+++. ..+++...++.+.+ . T Consensus 162 lp~~~~~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a~~~ek~~l~~av----~ 237 (488) T protein:vir:99 162 CPAPYFWHFSTGADNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTATPEDKAKLLAAL----H 237 (488) T ss_pred cccCceEEEEeecCCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCCCHHHHHHHHHHH----H Confidence 4322 244543333332 25666665543221 111 2467766777763 44555444443333 3 Q ss_pred HhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHh-CCCHHHh--cccch-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 197 NMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGY-FMNENIL--LGTAS-QEQQIYFYNSTIIPLLIQ 272 (378) Q Consensus 197 ~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~f-gVPp~~l--~~~~~-e~~~~~f~~~~l~P~~~~ 272 (378) +. +.+++.+++.+..+++.+.+....+......++..++|+.++ |=-...- +|+++ .+....-....+...++. T Consensus 238 ~~--~~~~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~iLGqtlts~~~~Gs~a~~~vh~~v~~d~~~aDa~~ 315 (488) T protein:vir:99 238 AI--QTDSAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKVGLGQVASTQGTPGRLGNDDLQADVRLDLVKADADL 315 (488) T ss_pred HH--hcCcEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHHH Confidence 22 133444444444445555433222222233477778888763 2110000 12222 223344557778899999 Q ss_pred HHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhC-CC-CCHHHHHHHhCCCCCCCCCeeeec Q lcl|Aclame:pro 273 LEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENING-PI-FTQNQLLVKMGEQPIEGGDVYIAN 350 (378) Q Consensus 273 ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~-G~-~t~NE~R~~~gl~p~~gGD~~~~~ 350 (378) |++.||+.|+.+--.. .++...+-++.|+. ....|.+++++.+.++++. |+ ++..++|+.+|+|+-..++....| T Consensus 316 i~~tln~~li~~l~~~-N~~~~~~p~~~~~~--~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~Gip~~~~~~~~~~~ 392 (488) T protein:vir:99 316 ICESFNLGPARWLTEW-NFPGAQPPRVYRVI--EEPEDITAKAERDEKVFRMSGFRPTRGYVQETYGVEVESTQAEATAP 392 (488) T ss_pred HHHHHHHHHHHHHHHh-CcCCcCCceeEecC--CCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHcCCCCcccccccccC Confidence 9999999887653322 22333333455554 3567889999999999996 76 888999999999987665554332 Q ss_pred ccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 351 LNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 351 ~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .-.. ..+. ...+.+..+.. T Consensus 393 ~~~~--------~~~~-~~~~~~~~~~~ 411 (488) T protein:vir:99 393 TPST--------EFAE-GDQPSDPAAAM 411 (488) T ss_pred CCcc--------cCCC-CCCCCCchHHH Confidence 2110 0000 01111110001 No 127 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=99.10 E-value=1.4e-12 Score=85.51 Aligned_cols=257 Identities=18% Similarity=0.232 Sum_probs=143.6 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) |.+|+--+ .|.+++-..|.+-. -....--..|.-|. T Consensus 1 ~~~~~~~~-----------------------------------~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 36 (279) T protein:vir:40 1 MSLFNLSR-----------------------------------RAEDVSFSTFTVQD---------PTTDLLLGKLLGLV 36 (279) T ss_pred Ccccccch-----------------------------------hhcccceeeeeecC---------cchhHHHHHHHHHH Confidence 55554322 12222211111100 00000001111122 Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC-----------CceEEEEeecCCeEEEeeeEEEEEccccCCccc Q lcl|Aclame:pro 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN-----------TGELLDLLFADDKKEYKPEELVRLTSPFYINED 149 (378) Q Consensus 81 ~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~dvih~r~~~~~~~~ 149 (378) ..--|...+-..-++.+.. |.+.|.-. +-+|-++ .-.+.-..|+...+++|-.|+..|-||+.+-.. T Consensus 37 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~d~fn~~vr~~~~~~vtVP~~Dv~IieNPlv~v~~ 114 (279) T protein:vir:40 37 SYFDNVDYSEASKLEDLFY-WALQGKEV-YRVWYGGFKYYAQRVNADQFNIVVREPNRREVTIRTNDYEMLLNPFYGANP 114 (279) T ss_pred HHhhcccchhhhhhhhhhh-hhhcccee-ehhhhhhHHHHHhhcCcchhhhheecCCcceeEeecchhhhhhcchheecc Confidence 2222333333333333332 23334321 1111111 011122234455577888899999888754332 Q ss_pred ---cchHHHHHHHHHHHH-hcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccc-cceeEecCCceeeecccchh Q lcl|Aclame:pro 150 ---TSILDNALASIQTKL-EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSY-NGLTPVDNKTEIVELKKDYS 224 (378) Q Consensus 150 ---~~~~~~~~~~i~~~~-~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~l~~~~~ 224 (378) .-.++.+.+++...+ +.++++++++++.+. ..++++++.+.+++++...++. +|+.+++.|-++++|+.+.. T Consensus 115 ee~~kM~~la~nai~~KLD~~~qIk~fIKTd~d~---glee~kekaR~rIk~mlalAk~~nGityid~~ddItQL~kDYS 191 (279) T protein:vir:40 115 QRFGVMFGMASNGIGRRLDSQAQIKIYWKTKVSS---GLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYS 191 (279) T ss_pred chhhHHHHHHHhhhhhhhcccceeeeEEecCcch---hHHHHHHHHHHHHHHHHHHHHhcCCeeeecCCceeEeeccccc Confidence 122344555555555 346889998887543 3455667777777777766663 78999999999999999988 Q ss_pred hhhHHHHHHHHHHHHHHhCCCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH------hhcCChhHHhhhccccceee Q lcl|Aclame:pro 225 VLNKDEIDLIKSELLTGYFMNENILLGTASQEQQIYFYNSTIIPLLIQLEKELT------YKLISTNRRRVVKGNLYYER 298 (378) Q Consensus 225 ~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~~e~~~~~f~~~~l~P~~~~ie~~l~------~~Ll~~~~~~~g~~~~~~~~ 298 (378) ....++.++++++.+..+|||..+|.|+++|.++++|+..+|.|++++.+..|. .+.++... T Consensus 192 tslk~die~lkS~l~Sq~GinekIL~GsAtE~q~iAyy~rtVePILkQyek~liY~~E~fv~y~ttta------------ 259 (279) T protein:vir:40 192 GSLQNDANLAIEIALSEYGMPRELLYGQSNEVTIIAFAIQKVLPLLKQHDKNIIFNQENFVAYISTTA------------ 259 (279) T ss_pred cccHHHHHHHHHHHHhhcCCchhhccccCchhhhhhHHHhhHHHHHHHhcccccchhhhhhhhheecc------------ Confidence 888888999999999999999999999999999999999999999999776443 33333211 Q ss_pred EEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 299 IIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD 345 (378) Q Consensus 299 ~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD 345 (378) ..|.+ |-.-...+-+|+ |.| T Consensus 260 ------------------------~gg~~--~s~~~~~~~~~~-~~~ 279 (279) T protein:vir:40 260 ------------------------KGGAI--ESKSSKRDSEPV-GND 279 (279) T ss_pred ------------------------cCccc--ccccccccCCCC-CCC Confidence 11221 111112233343 222 No 128 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=99.10 E-value=8.4e-11 Score=75.83 Aligned_cols=374 Identities=10% Similarity=0.061 Sum_probs=193.6 Q ss_pred CCccccccccc----cc-------cccCCcc---------ceeecccchhh-h-hhHHHHHHHHHHHhhhccCceEEEEe Q lcl|Aclame:pro 1 MNLFGKVVSFS----RG-------KLNNDTQ---------RVTAWQNEAVE-Y-TSAFVTNIHNKIANEITKVEFNHVKY 58 (378) Q Consensus 1 M~~f~~~~~~~----~~-------~~~~~~~---------~~~~~~~~~~~-~-~~~~v~~~i~~ia~~ia~~p~~~~~~ 58 (378) +.+..+.++-- +. ...+.+. .-..|+.++-. | ..+.++-.|..|++++|++.+..-+. T Consensus 6 lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL~as~i 85 (639) T protein:vir:10 6 LRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTLIPSAI 85 (639) T ss_pred eeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeeeEeeee Confidence 23333332210 00 0011111 11234444322 2 23567888999999999999988888 Q ss_pred cccccccccceecc----CchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCce------EEEEe---- Q lcl|Aclame:pro 59 KKSDVGSDTLISMA----GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGE------LLDLL---- 124 (378) Q Consensus 59 ~~~~~~~~~~~~~~----~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~------~~~~~---- 124 (378) +.+.+..-+.+... .+.+.+..+.=----+-..++++.+..++-+-|++|+....+.+.+- +..-| T Consensus 86 dpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~W~vvs 165 (639) T protein:vir:10 86 DPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRARWYAVT 165 (639) T ss_pred ccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccceeeee Confidence 76655433222211 23333332211223456678899999999999999987665444321 12222 Q ss_pred ----------------ecCCeEEEeee-EEEEEc----cccCCccccchHHHHHHHHHHHH-------hcC----Cccee Q lcl|Aclame:pro 125 ----------------FADDKKEYKPE-ELVRLT----SPFYINEDTSILDNALASIQTKL-------EQG----KLRGL 172 (378) Q Consensus 125 ----------------~~~~~~~~~~~-dvih~r----~~~~~~~~~~~~~~~~~~i~~~~-------~~~----~~~gi 172 (378) |++...+|.-+ +++ || .|......-||+..++..+..-. +.+ .-+|+ T Consensus 166 ~~Ei~~~~~~~~~i~lPdG~~he~~~~~d~l-~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl~gnGv 244 (639) T protein:vir:10 166 REEIKSKAGETAEISLPDGKTHEFNRDLDSL-VRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSRVMNNGV 244 (639) T ss_pred HHHhcccCCCeeEeecCCCCCccccCCCceE-EEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhCce Confidence 33333444322 222 33 23444556777777766554321 111 12456 Q ss_pred eeeCCcCCH-------------------------HHHHHHHHHHHHHHHHhhcccc--c-cceeEec----CCceeeecc Q lcl|Aclame:pro 173 LKINAFLDI-------------------------DNTQEYREKALTTIKNMQEGSS--Y-NGLTPVD----NKTEIVELK 220 (378) Q Consensus 173 l~~~~~l~~-------------------------~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~----~g~~~~~l~ 220 (378) +.++..++- .+.+.+.+.|.+.....+...+ + .-++++. ..-+++.|. T Consensus 245 lfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~~ikhl~ 324 (639) T protein:vir:10 245 LFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLEKVQHIK 324 (639) T ss_pred eeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhcCeeeee Confidence 555544321 1223344444333322222211 1 1123332 222455555 Q ss_pred cchh--hhhHHHHHHHHHHHHHHhCCCHHHhcccchHHHH------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcc Q lcl|Aclame:pro 221 KDYS--VLNKDEIDLIKSELLTGYFMNENILLGTASQEQQ------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG 292 (378) Q Consensus 221 ~~~~--~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~~e~~~------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~ 292 (378) .... ......++..+.++|....|||..|.|..+.+-+ ..-++-.|.|.+..|+++|++.+|.+.-...|.. T Consensus 325 f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~Lrp~Le~eGvD 404 (639) T protein:vir:10 325 FGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDILTPLLAREGID 404 (639) T ss_pred ecCchhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHHHHhCCC Confidence 4433 2334556777889999999999988765433222 2345667999999999999999999888888875 Q ss_pred ccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCe-------------eeecccc----ee Q lcl|Aclame:pro 293 NLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV-------------YIANLNA----VA 355 (378) Q Consensus 293 ~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~-------------~~~~~n~----~~ 355 (378) ...| -+-||.+.|- .|+ ++.+-+..+++.|.+|-.-.|+.+|+.--.|-|. +-.+-++ +| T Consensus 405 p~kY-vvW~DaS~Lt-~dP-d~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~li~~~ap 481 (639) T protein:vir:10 405 PTKY-ILWYDASGLT-SDP-DLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPELIAMYAP 481 (639) T ss_pred HHHh-EeeecCcccc-cCC-CCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcchhhhhhh Confidence 5555 4678877654 333 3445566788999999999999999865533221 1111111 11 Q ss_pred cc--------cchhccCccCCCCCCC-----------CCCCC Q lcl|Aclame:pro 356 VK--------NLSDLQGSRKDVTSTD-----------ETNNQ 378 (378) Q Consensus 356 ~~--------~~~~~~~~~~~~~~~~-----------e~~~e 378 (378) +. -...........++.+ +.+-| T Consensus 482 l~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte 523 (639) T protein:vir:10 482 LLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTE 523 (639) T ss_pred ccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcc Confidence 11 0000000111111111 11111 No 129 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=99.10 E-value=8.4e-11 Score=75.83 Aligned_cols=374 Identities=10% Similarity=0.061 Sum_probs=193.6 Q ss_pred CCccccccccc----cc-------cccCCcc---------ceeecccchhh-h-hhHHHHHHHHHHHhhhccCceEEEEe Q lcl|Aclame:pro 1 MNLFGKVVSFS----RG-------KLNNDTQ---------RVTAWQNEAVE-Y-TSAFVTNIHNKIANEITKVEFNHVKY 58 (378) Q Consensus 1 M~~f~~~~~~~----~~-------~~~~~~~---------~~~~~~~~~~~-~-~~~~v~~~i~~ia~~ia~~p~~~~~~ 58 (378) +.+..+.++-- +. ...+.+. .-..|+.++-. | ..+.++-.|..|++++|++.+..-+. T Consensus 6 lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL~as~i 85 (639) T protein:vir:97 6 LRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTLIPSAI 85 (639) T ss_pred eeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeeeEeeee Confidence 23333332210 00 0011111 11234444322 2 23567888999999999999988888 Q ss_pred cccccccccceecc----CchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCce------EEEEe---- Q lcl|Aclame:pro 59 KKSDVGSDTLISMA----GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGE------LLDLL---- 124 (378) Q Consensus 59 ~~~~~~~~~~~~~~----~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~------~~~~~---- 124 (378) +.+.+..-+.+... .+.+.+..+.=----+-..++++.+..++-+-|++|+....+.+.+- +..-| T Consensus 86 dpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~W~vvs 165 (639) T protein:vir:97 86 DPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRARWYAVT 165 (639) T ss_pred ccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccceeeee Confidence 76655433222211 23333332211223456678899999999999999987665444321 12222 Q ss_pred ----------------ecCCeEEEeee-EEEEEc----cccCCccccchHHHHHHHHHHHH-------hcC----Cccee Q lcl|Aclame:pro 125 ----------------FADDKKEYKPE-ELVRLT----SPFYINEDTSILDNALASIQTKL-------EQG----KLRGL 172 (378) Q Consensus 125 ----------------~~~~~~~~~~~-dvih~r----~~~~~~~~~~~~~~~~~~i~~~~-------~~~----~~~gi 172 (378) |++...+|.-+ +++ || .|......-||+..++..+..-. +.+ .-+|+ T Consensus 166 ~~Ei~~~~~~~~~i~lPdG~~he~~~~~d~l-~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl~gnGv 244 (639) T protein:vir:97 166 REEIKSKAGETAEISLPDGKTHEFNRDLDSL-VRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSRVMNNGV 244 (639) T ss_pred HHHhcccCCCeeEeecCCCCCccccCCCceE-EEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhCce Confidence 33333444322 222 33 23444556777777766554321 111 12456 Q ss_pred eeeCCcCCH-------------------------HHHHHHHHHHHHHHHHhhcccc--c-cceeEec----CCceeeecc Q lcl|Aclame:pro 173 LKINAFLDI-------------------------DNTQEYREKALTTIKNMQEGSS--Y-NGLTPVD----NKTEIVELK 220 (378) Q Consensus 173 l~~~~~l~~-------------------------~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~----~g~~~~~l~ 220 (378) +.++..++- .+.+.+.+.|.+.....+...+ + .-++++. ..-+++.|. T Consensus 245 lfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~~ikhl~ 324 (639) T protein:vir:97 245 LFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLEKVQHIK 324 (639) T ss_pred eeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhcCeeeee Confidence 555544321 1223344444333322222211 1 1123332 222455555 Q ss_pred cchh--hhhHHHHHHHHHHHHHHhCCCHHHhcccchHHHH------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcc Q lcl|Aclame:pro 221 KDYS--VLNKDEIDLIKSELLTGYFMNENILLGTASQEQQ------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG 292 (378) Q Consensus 221 ~~~~--~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~~e~~~------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~ 292 (378) .... ......++..+.++|....|||..|.|..+.+-+ ..-++-.|.|.+..|+++|++.+|.+.-...|.. T Consensus 325 f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~Lrp~Le~eGvD 404 (639) T protein:vir:97 325 FGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDILTPLLAREGID 404 (639) T ss_pred ecCchhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHHHHhCCC Confidence 4433 2334556777889999999999988765433222 2345667999999999999999999888888875 Q ss_pred ccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCe-------------eeecccc----ee Q lcl|Aclame:pro 293 NLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV-------------YIANLNA----VA 355 (378) Q Consensus 293 ~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~-------------~~~~~n~----~~ 355 (378) ...| -+-||.+.|- .|+ ++.+-+..+++.|.+|-.-.|+.+|+.--.|-|. +-.+-++ +| T Consensus 405 p~kY-vvW~DaS~Lt-~dP-d~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~li~~~ap 481 (639) T protein:vir:97 405 PTKY-ILWYDASGLT-SDP-DLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPELIAMYAP 481 (639) T ss_pred HHHh-EeeecCcccc-cCC-CCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcchhhhhhh Confidence 5555 4678877654 333 3445566788999999999999999865533221 1111111 11 Q ss_pred cc--------cchhccCccCCCCCCC-----------CCCCC Q lcl|Aclame:pro 356 VK--------NLSDLQGSRKDVTSTD-----------ETNNQ 378 (378) Q Consensus 356 ~~--------~~~~~~~~~~~~~~~~-----------e~~~e 378 (378) +. -...........++.+ +.+-| T Consensus 482 l~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte 523 (639) T protein:vir:97 482 LLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTE 523 (639) T ss_pred ccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcc Confidence 11 0000000111111111 11111 No 130 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.06 E-value=2.9e-10 Score=72.88 Aligned_cols=332 Identities=11% Similarity=0.113 Sum_probs=146.8 Q ss_pred CCccccccccc---cccccCCccceeeccc--chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCch Q lcl|Aclame:pro 1 MNLFGKVVSFS---RGKLNNDTQRVTAWQN--EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) Q Consensus 1 M~~f~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) |+|.+-..+.. ...+...+........ ++.+..+.....+|+.+++.+-.--..+....+... . ......+.. T Consensus 23 d~l~~~~~glg~~r~~~~~~~g~~~~~~~~~l~~~Yr~~~ia~~iVd~~~d~~~~~~~~i~~g~~~~~-~-~~~~~~e~~ 100 (449) T protein:vir:10 23 MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQTNPEIIEGDDADD-S-EDETSWEKK 100 (449) T ss_pred HHHHHHHhcCCcccchhhhhcCCcccCCHHHHHHHHhcCchhHHHHHhhhhhhhhcCcccccCccccc-h-hhhHHHHHH Confidence 33332211111 1111111111111111 223334567789999999866221111111111100 0 000001122 Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC---------CceEEEEeec-------------------- Q lcl|Aclame:pro 76 LDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN---------TGELLDLLFA-------------------- 126 (378) Q Consensus 76 l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~---------~g~~~~~~~~-------------------- 126 (378) +.+|+.. .-+..+.+..-+ -.+.|-|.+++..+++ .+.+..+.|. T Consensus 101 ~~~l~~~-----~~~~~l~ea~~~-~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~v~~~~~i~~~~~~~dp~sp~yg 174 (449) T protein:vir:10 101 SKQVFTN-----RLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSWAGSLKVAEWDTGINSKTYG 174 (449) T ss_pred HHHHHHH-----HHHHHHHHHHHh-hhccCcEEEEEEecCCCCCCcccccCcceeeEEeeccccCChhhhhcCCCCCCCC Confidence 2333320 012223333333 3456767666543322 1233333221 Q ss_pred ---------------CCeEEEeeeEEEEEccccCCccccchHHHHHHHHHH-----------HH-hcC-----------C Q lcl|Aclame:pro 127 ---------------DDKKEYKPEELVRLTSPFYINEDTSILDNALASIQT-----------KL-EQG-----------K 168 (378) Q Consensus 127 ---------------~~~~~~~~~dvih~r~~~~~~~~~~~~~~~~~~i~~-----------~~-~~~-----------~ 168 (378) ...+.++++.|+||-. ....|.+.++.+.+.+-. ++ +.. . T Consensus 175 ~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~--~~~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~ 252 (449) T protein:vir:10 175 QPKLWKYTERLPNGSSRRVDIHPDRVFILGD--YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEID 252 (449) T ss_pred CceEEEEeeeccCCCccceeeccceeEeecC--CCCCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhh Confidence 1123578889998842 123345555544432210 01 100 0 Q ss_pred cceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHH Q lcl|Aclame:pro 169 LRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENI 248 (378) Q Consensus 169 ~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~ 248 (378) +.++. ..+ .....+..+++...+.....+.+ .+.++.+-+|+.++.+..+++- .+.....+||.+-|||... T Consensus 253 ~~~l~---~~~-~~~~e~~~~~~~~~~~~~~~~~~---~~~i~~~~d~~~~~~~~sgl~d-~l~~~~q~iaaa~~IP~t~ 324 (449) T protein:vir:10 253 FTNLA---SLY-GVSIDELQDKFNEVAGEINRGND---VLMTTQGATVTPLVTSVADPTA-TYNVNLQTAAAGVDIPTRI 324 (449) T ss_pred hhhhh---HHh-hCCchHHHHHHHHHHHHHhccch---heeecCCcceEEEecccCChhH-HHHHHHHHHHHHhCCCeee Confidence 11111 101 11112334455555444433332 3556777789999887766643 2344457899999999876 Q ss_pred hccc------chHHHHHHHH------HHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHH Q lcl|Aclame:pro 249 LLGT------ASQEQQIYFY------NSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELID 316 (378) Q Consensus 249 l~~~------~~e~~~~~f~------~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~ 316 (378) |-|. ++++ .+.|| +.-|.|.++.+-+-|-+.-+ |... -++.|.+.+|...+.+++++ T Consensus 325 L~Gqsp~glnst~D-~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~-------g~~~---~d~~i~f~pL~~~t~kEkAe 393 (449) T protein:vir:10 325 LIGNQQAERSSTED-QKYFNARCQSRRVDLSFEIEDFCDKLIELKI-------IDAV---AKKAVIWDDLNEQTGTEKLT 393 (449) T ss_pred eeccCccccccchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc-------CCCC---CceeEEeCCCCCCCHHHHHH Confidence 6432 1232 22232 22356666665555433222 1111 13455556899999998855 Q ss_pred -------HHHHHHhCC---CCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 317 -------LYHENINGP---IFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 317 -------~~~~~~~~G---~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++.+++++| +++.+|+|+.+|++|..+ +.+ +.++..+.+ .+.+.. T Consensus 394 i~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~-~~~-------~~e~~de~~---------~~~d~~ 448 (449) T protein:vir:10 394 NAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE-EPL-------GEEDGDEED---------KATDSA 448 (449) T ss_pred HHHHHHHHHHHHHHccccCCcCHHHHHHHhcccCCCC-CCC-------CCCCCcccc---------ccCCcC Confidence 455666666 899999999999998643 211 101100101 111111 No 131 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=99.05 E-value=2.4e-09 Score=67.80 Aligned_cols=346 Identities=10% Similarity=-0.018 Sum_probs=168.5 Q ss_pred CCccccccccccccccCCcccee-ec-----ccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVT-AW-----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~ 74 (378) ..-++-. .+.+..... ..+. +. ..+.+ ..-+.|.+|++.+...|.+++|.+.....+ .. ... T Consensus 30 ~~~~~~~--~~~~~~p~~-~~il~~~~~~~~~y~~m-~~D~~i~s~l~~Rk~av~~~~w~i~~~~~~-----~~---~a~ 97 (491) T protein:vir:79 30 ARSIDFF--ALGMYLPNP-DPVLKALGKDIRVYREL-RADAHVGGCVRRRKAAVKALEWGLDRGKAK-----SR---VAK 97 (491) T ss_pred ccccccc--cccccCcch-hHHHhhccCCHHHHHHH-hhChHHHHHHHHHHHHHhCCCcEEecCCCC-----HH---HHH Confidence 1111100 011111111 1110 00 00122 245679999999999999999998543221 11 123 Q ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceE--EEEee----------cC-----------CeEE Q lcl|Aclame:pro 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGEL--LDLLF----------AD-----------DKKE 131 (378) Q Consensus 75 ~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~--~~~~~----------~~-----------~~~~ 131 (378) -+.++|. ++ .+.+++..+ .+.+.+|-+...++|+...|.. ..+.+ .+ .+.. T Consensus 98 ~i~e~l~-~~----~~~~~i~~~-lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~~~~l~l~~~~~~~~g~~ 171 (491) T protein:vir:79 98 SIADVFA-DL----DLSRIATEM-LDAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVYDPENQLRFRSKEHWVQGEE 171 (491) T ss_pred HHHHHHh-cC----CHHHHHHHH-HHhhhhcceeEEEEEeecCCeeeEEeeeeecccceeeccCCceEEeecCCCCCcee Confidence 4556664 33 355566554 4577799999888776544443 22211 11 1234 Q ss_pred EeeeEEEEEcc-ccCC-ccccchHHHHHHHHH----------HHH-hcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 132 YKPEELVRLTS-PFYI-NEDTSILDNALASIQ----------TKL-EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNM 198 (378) Q Consensus 132 ~~~~dvih~r~-~~~~-~~~~~~~~~~~~~i~----------~~~-~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) +++...|++++ +.++ -.|.+++..+.-..- .+. .-|.|--+.+++...+++..+++.+.+.+ . T Consensus 172 lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~~~a~~~ek~~l~~al~~----~ 247 (491) T protein:vir:79 172 LPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSASDAETNLLLDRLED----M 247 (491) T ss_pred ecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHHH----H Confidence 55555555553 2222 235566665543221 121 34677677778776666655555444433 2 Q ss_pred hccccccceeEecCCceeeecccchhhhh-H-HHHHHHHHHHHHHh-CCCHHH-hcccch-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 QEGSSYNGLTPVDNKTEIVELKKDYSVLN-K-DEIDLIKSELLTGY-FMNENI-LLGTAS-QEQQIYFYNSTIIPLLIQL 273 (378) Q Consensus 199 ~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~-~~~~~~~~~Ia~~f-gVPp~~-l~~~~~-e~~~~~f~~~~l~P~~~~i 273 (378) +.+++.+++.+..+++.+.+......+ . +..++..++|+.++ |=...- -+|+++ .+....-....+.-.++.| T Consensus 248 --~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~~~gs~a~~~vh~~v~~~i~~~D~~~i 325 (491) T protein:vir:79 248 --VQDAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIALLGQNQTTEATSTRASAQAGLEVTDDIRDGDKAIV 325 (491) T ss_pred --hcCeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHHhhhhhccCcccchhhHHHHHHHHHHHHHHHHHHH Confidence 234444555555555555543222222 2 33466677777653 211000 012222 1223334456677788888 Q ss_pred HHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCC-CCHHHHHHHhCCCCCCCCCeeeeccc Q lcl|Aclame:pro 274 EKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPI-FTQNQLLVKMGEQPIEGGDVYIANLN 352 (378) Q Consensus 274 e~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~-~t~NE~R~~~gl~p~~gGD~~~~~~n 352 (378) ++.||+ |+.+--... ++.....+|.|+.. . .+.+.+++.+.++++.|+ ++..++|+.+|+|+-+.++....+.. T Consensus 326 ~~tln~-li~~l~~~N-~~~~~~p~f~~~e~--e-e~~~~~a~~~~~L~~~G~~i~~~~~~e~~Gip~~~~~e~~~~~~~ 400 (491) T protein:vir:79 326 VEAMNM-LIRWICDLN-FDGAARPVFDMWEQ--E-QVDEIQAGRDEKLTRAGARFTPAYFKRAYNLQDGDLDERPLPVSA 400 (491) T ss_pred HHHHHH-HHHHHHHhc-CCCCCcceEeecCc--C-chhHHHHHHHHHHHhCCCccCHHHHHHHhCCCCCCCCccccCcCc Confidence 888885 554432222 22223344555432 1 223568999999999998 89999999999998766665432221 Q ss_pred ceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 353 AVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) -.+.... ........+.+..+.. T Consensus 401 ~~~~~~~---~~~~~~~~~~~~~d~~ 423 (491) T protein:vir:79 401 VDAVGAA---SFAEFEAPDQDALDAA 423 (491) T ss_pred ccccccc---cccccCCCCCcchHHH Confidence 1110000 0000000000000000 No 132 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=99.03 E-value=3.8e-10 Score=72.22 Aligned_cols=370 Identities=11% Similarity=0.023 Sum_probs=190.9 Q ss_pred CCccccccc----c------ccc--------------cccCCccceeecccchhh-hh-hHHHHHHHHHHHhhhccCceE Q lcl|Aclame:pro 1 MNLFGKVVS----F------SRG--------------KLNNDTQRVTAWQNEAVE-YT-SAFVTNIHNKIANEITKVEFN 54 (378) Q Consensus 1 M~~f~~~~~----~------~~~--------------~~~~~~~~~~~~~~~~~~-~~-~~~v~~~i~~ia~~ia~~p~~ 54 (378) |.++.=.-+ | .++ ......+.-..|+.++-. |. -+.++-.|..|++++|++.+. T Consensus 1 ~~~~rPk~~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~kt~~~~~~~WQ~eAW~~~d~vpELry~vgW~~~a~SR~rL~ 80 (646) T protein:vir:10 1 MALLKPKSAPPEPFGAEVARRIALAGATAQVDLGASSSWKTWKFGNKDWQTEGWRLYDIIPEHHFLAGRIGDSVAQARLY 80 (646) T ss_pred CcccCCCCCCCCcccccccchhhhhhccccccCCCcceeecCCCcchhhhHHHHHHHhhhhhHhhHhhhhhhhhceeeee Confidence 766631111 0 010 001111122355555432 22 266788899999999999988 Q ss_pred EEEecccccccccceeccCchHHHHHhccCCCC-CCHHHHHHHHHHHHHhcCCcEEEEE---EeCC-------------- Q lcl|Aclame:pro 55 HVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGE-RNSMDFWRKVIKKLLSAPYVDLYAV---FDDN-------------- 116 (378) Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~-~s~~~f~~~~~~~~ll~Gna~~~~~---~~~~-------------- 116 (378) .-+.+..|. ..-.+.++.+.++-.. |=.- .-..++++.+..++-+-|++|+... .... T Consensus 81 aseiddtG~---~tg~v~~~~v~~iv~~-~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~~~~W~vvt~~Ev 156 (646) T protein:vir:10 81 VTEVDDTGE---ETGEVQDERIKRLAAV-PLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAAEGSWFVVTGSAI 156 (646) T ss_pred eeeecCCCC---CcCccchHHHHHHhhh-hccchhhHHHHHHHHHhheecccceEEeeccccCCCCCCccceeeecHHHh Confidence 776662222 2234455666665542 3222 2346689999999999999998631 0111 Q ss_pred --CceEEEEeec----CCe-EEEeeeEEEEEc----cccCCccccchHHHHHHHHHHHH-------hcC----Ccceeee Q lcl|Aclame:pro 117 --TGELLDLLFA----DDK-KEYKPEELVRLT----SPFYINEDTSILDNALASIQTKL-------EQG----KLRGLLK 174 (378) Q Consensus 117 --~g~~~~~~~~----~~~-~~~~~~dvih~r----~~~~~~~~~~~~~~~~~~i~~~~-------~~~----~~~gil~ 174 (378) +|.=+.+.+. ++. +..+..|++ || .|......-||+..++..+..-. +.+ .-+|++. T Consensus 157 ~~tg~~~~i~~p~~~~g~~~v~~~~~d~l-vRiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSRL~GnGvLf 235 (646) T protein:vir:10 157 SRTGDEIAVRRPQQRGGSKLVLVDGQDIL-IRCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSRLTGAGIMF 235 (646) T ss_pred ccCCCeeeeecCccCCCCCcceecCCceE-EEEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHHHhcCceee Confidence 1111222211 111 223444553 34 34445556788777776654321 111 2357777 Q ss_pred eCCcCC-------HHHHHHHHHHHHHHHHHhhcccc--c-cceeEecC-Cc------eeeecccchhh--hhHHHHHHHH Q lcl|Aclame:pro 175 INAFLD-------IDNTQEYREKALTTIKNMQEGSS--Y-NGLTPVDN-KT------EIVELKKDYSV--LNKDEIDLIK 235 (378) Q Consensus 175 ~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~-g~------~~~~l~~~~~~--~~~~~~~~~~ 235 (378) +|..++ +.....+.+-|.+.....+...+ + .-++++.. |. +++.+...... .....++..+ T Consensus 236 vP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~aiktR~daI 315 (646) T protein:vir:10 236 LPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEITPMKDKAI 315 (646) T ss_pred eccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHHhhhHHHHH Confidence 776543 22333444444333332222211 1 11333322 11 33333333222 2234556778 Q ss_pred HHHHHHhCCCHHHhcccchHHHH------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhc Q lcl|Aclame:pro 236 SELLTGYFMNENILLGTASQEQQ------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFA 309 (378) Q Consensus 236 ~~Ia~~fgVPp~~l~~~~~e~~~------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~ 309 (378) .++|....|||+.|.|..+.+-+ ..-++ .|.|.+..|+++|++.+|.+.-...|......+-+-||.+.|- . T Consensus 316 ~RlA~glDIppE~LLGlgd~NHWtAWqI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyvvW~DaS~Lt-~ 393 (646) T protein:vir:10 316 ARLASSAEIPGEVLTGIGDANHWTAWLISDEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYAFAFDTSTLA-S 393 (646) T ss_pred HHHHhccCCchhheeeccccceeeeeeeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeEEeecCcccc-c Confidence 89999999999988664432211 12234 5999999999999999998888888864444444677876654 3 Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCe------------------eeecccceecccchhc--------- Q lcl|Aclame:pro 310 TLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV------------------YIANLNAVAVKNLSDL--------- 362 (378) Q Consensus 310 d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~------------------~~~~~n~~~~~~~~~~--------- 362 (378) ++ ++.+-+..+++.|.+|-...|+.+||.--.+-+. ++.|.-..+++....+ T Consensus 394 ~p-d~~deA~qa~drGAIt~eAlrk~~Gf~~dd~pt~~E~~~~~~~~~v~~~P~Lil~P~~qa~~~~P~~~~~~lpp~~~ 472 (646) T protein:vir:10 394 KP-NRLDEAIQLHERNLIKDEEVVKAGAFSVDQMPTVQERAVQILLGLVKTQPDLILDPAIQAALGLPAVQSVGLPPTAA 472 (646) T ss_pred CC-CCcHHHHHHHHcCCccHHHHHHHhcccccccCChHHHHHHHHHHHhcCCccccccchhhccccCCCcCccccCCccc Confidence 33 3445566788999999999999999864322211 1111111111111100 Q ss_pred ---cCcc-CCCCCCCCCCCC Q lcl|Aclame:pro 363 ---QGSR-KDVTSTDETNNQ 378 (378) Q Consensus 363 ---~~~~-~~~~~~~e~~~e 378 (378) .+.+ .++.++....+| T Consensus 473 ~~~dg~~~~~e~~g~~~~~E 492 (646) T protein:vir:10 473 QRTDGDLDDDESEGAPNGGE 492 (646) T ss_pred ccccCCCCChhhcCCCCCCc Confidence 0000 111111111111 No 133 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.03 E-value=2.7e-10 Score=73.00 Aligned_cols=372 Identities=7% Similarity=-0.023 Sum_probs=180.5 Q ss_pred CCcccccccc---c----------cccc--cCCcccee--------------------ecccchhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSF---S----------RGKL--NNDTQRVT--------------------AWQNEAVEYTSAFVTNIHNKIA 45 (378) Q Consensus 1 M~~f~~~~~~---~----------~~~~--~~~~~~~~--------------------~~~~~~~~~~~~~v~~~i~~ia 45 (378) |.--.+..+. . +.+- ....-... ..+...+..+++++.++|+.+. T Consensus 2 ~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 81 (553) T protein:vir:63 2 TKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQR 81 (553) T ss_pred cchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 1111111100 0 0000 00000000 1111224456788899999988 Q ss_pred hhhccCceEEEEeccc-------ccccccceeccCchHHHHHhccCCC------CCCHHHHHHHHHHHHHhcCCcEEEEE Q lcl|Aclame:pro 46 NEITKVEFNHVKYKKS-------DVGSDTLISMAGSDLDEVLNWSPKG------ERNSMDFWRKVIKKLLSAPYVDLYAV 112 (378) Q Consensus 46 ~~ia~~p~~~~~~~~~-------~~~~~~~~~~~~~~l~~lL~~~PN~------~~s~~~f~~~~~~~~ll~Gna~~~~~ 112 (378) +.|-..-|.+--+... +...+...... ..+.+.+..+||. .++.+.+...++..++..|++|+.++ T Consensus 82 ~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~i-e~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~ 160 (553) T protein:vir:63 82 DSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIV-EAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAE 160 (553) T ss_pred HhhccCCceeeeccchhhhcCCCHHHHHHHHHHH-HHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEee Confidence 8876656655322110 00000000011 1122344445543 46888999999999999999998765 Q ss_pred EeC-------------------------------------CCceEEEEeecC--------------------CeEEEeee Q lcl|Aclame:pro 113 FDD-------------------------------------NTGELLDLLFAD--------------------DKKEYKPE 135 (378) Q Consensus 113 ~~~-------------------------------------~~g~~~~~~~~~--------------------~~~~~~~~ 135 (378) ++. ..|+++.||... ....++.+ T Consensus 161 ~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~~v~a~ 240 (553) T protein:vir:63 161 WDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSKPWGRR 240 (553) T ss_pred eccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccccccChh Confidence 432 234444444310 01135678 Q ss_pred EEEEEcccc--CCccccchHHHHHHHHH-----------HHHhcCCcceeeeeCCcCCHHHHHHH--------------- Q lcl|Aclame:pro 136 ELVRLTSPF--YINEDTSILDNALASIQ-----------TKLEQGKLRGLLKINAFLDIDNTQEY--------------- 187 (378) Q Consensus 136 dvih~r~~~--~~~~~~~~~~~~~~~i~-----------~~~~~~~~~gil~~~~~l~~~~~~~~--------------- 187 (378) +|||+..+. .-..|++.+..++..+. .+.-++.+.++|+.+.. ++...+. T Consensus 241 ~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 318 (553) T protein:vir:63 241 QVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELP--PEFIHSQMSGGSPNADMVGIFG 318 (553) T ss_pred HheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCC--hhhhhhhccccccccccccccc Confidence 999996542 23457776665554332 22334566677765431 1111110 Q ss_pred --HHHHHHHHHHh-hccccccceeEecCCceeeecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhcccch-----H--- Q lcl|Aclame:pro 188 --REKALTTIKNM-QEGSSYNGLTPVDNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILLGTAS-----Q--- 255 (378) Q Consensus 188 --~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~~~~~-----e--- 255 (378) .+.......+. ...=..|.+..|..|.+++.++.+.....+. ..+.+.+.||+.+|||.+.|.++++ . T Consensus 319 ~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~ 398 (553) T protein:vir:63 319 KYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQA 398 (553) T ss_pred ccccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHH Confidence 00000000000 0001356788889999988887653333433 3477789999999999999865432 1 Q ss_pred ---H-------HHHHHHHHHHHHHHHH-HHHHHHhhcCChhHHhhhccc---------cceeeEEecchhhhhcCHHHHH Q lcl|Aclame:pro 256 ---E-------QQIYFYNSTIIPLLIQ-LEKELTYKLISTNRRRVVKGN---------LYYERIIVDNQLFKFATLKELI 315 (378) Q Consensus 256 ---~-------~~~~f~~~~l~P~~~~-ie~~l~~~Ll~~~~~~~g~~~---------~~~~~~~~d~~~l~~~d~~~~~ 315 (378) + .+..|....+.|+.+. +++++-.-.++-.. +... ..+.+..+-.-.....|+..-+ T Consensus 399 ~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~---~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~ 475 (553) T protein:vir:63 399 GIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPP---GQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKET 475 (553) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC---cccchhhcchhhhhhhhceeeecCCccccChHHHH Confidence 0 1112445556665444 44444332222110 0000 0122233334455667999999 Q ss_pred HHHHHHHhCCCCCHHHHHHHhCCCCCCCC----------Ceeeecccceecc---cchhccCccCCCC--CCCCCCCC Q lcl|Aclame:pro 316 DLYHENINGPIFTQNQLLVKMGEQPIEGG----------DVYIANLNAVAVK---NLSDLQGSRKDVT--STDETNNQ 378 (378) Q Consensus 316 ~~~~~~~~~G~~t~NE~R~~~gl~p~~gG----------D~~~~~~n~~~~~---~~~~~~~~~~~~~--~~~e~~~e 378 (378) ++...++++|+.|.-|+-++.|.+|-+-- +++=++.+..|-. .....+.+..++. +.++.+.| T Consensus 476 ~A~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 553 (553) T protein:vir:63 476 QAAVMRIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQTSQQGE 553 (553) T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCCCcccccC Confidence 99999999999999999888898875321 1111111111111 1111111111111 22222223 No 134 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=99.00 E-value=6.5e-09 Score=65.45 Aligned_cols=369 Identities=12% Similarity=0.136 Sum_probs=165.6 Q ss_pred CCccccccccccccccCCccceeec-c----cchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCch Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAW-Q----NEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) =.++.-...-..+..-.....+--+ . .+.+ ..-+.|.+|++.+...|.+++|.|....... .+......-.- T Consensus 17 ~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~ly~~m-~~D~hi~s~l~~Rk~av~~~~w~v~p~~~~~--~d~~~~~~a~~ 93 (488) T protein:vir:95 17 GEVGSLGLKVKNGRIYEEPRQALRFPESIKTFQLM-MRDPAVAASVNIIKMFVRKVNWRFVPPKGKE--QDPKMLERADF 93 (488) T ss_pred HHHHHHhhccccchhhccchhhhcccchHHHHHHH-hhChHHHHHHHHHHHHHhcCCceEecCCCCc--hhHHHHHHHHH Confidence 0111000000000000000000000 0 0111 1346799999999999999999985322111 11100001122 Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCC------------ceE--EEE-----------ee--cC- Q lcl|Aclame:pro 76 LDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNT------------GEL--LDL-----------LF--AD- 127 (378) Q Consensus 76 l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~------------g~~--~~~-----------~~--~~- 127 (378) +.+.|. |-..++.+++..+. +.+.+|-+...++|+... |.. ..+ .+ ++ T Consensus 94 v~~~l~---~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~~i~~Rpq~~~~~f~~d~d~~ 169 (488) T protein:vir:95 94 FNSLMD---DMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWAKLPIRNQSTLDKWYFDEDFR 169 (488) T ss_pred HHHHHh---ccCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeeeeeeeeecCcccccceeeccCCC Confidence 333332 22234566666654 567889888888775432 211 011 01 11 Q ss_pred -------------------------CeEEEeeeEEEEEc-cccCCc-cccchHHHHHHHHH----------HHHh---cC Q lcl|Aclame:pro 128 -------------------------DKKEYKPEELVRLT-SPFYIN-EDTSILDNALASIQ----------TKLE---QG 167 (378) Q Consensus 128 -------------------------~~~~~~~~dvih~r-~~~~~~-~~~~~~~~~~~~i~----------~~~~---~~ 167 (378) ..+.+++...|+.+ ...+++ .|.+++..+.-..- .+.. .+ T Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g 249 (488) T protein:vir:95 170 RVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYGNPEGRSPLLNAYVPWKYKVQIEEYEAVGVSRDLVG 249 (488) T ss_pred ceeecccccccccccccccccccccccccccccceEEEeecCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 11223444434333 222222 24566555532221 1111 23 Q ss_pred Ccceeee--eCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceee-------ecccc-hhhhhHHH-HHHHHH Q lcl|Aclame:pro 168 KLRGLLK--INAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIV-------ELKKD-YSVLNKDE-IDLIKS 236 (378) Q Consensus 168 ~~~gil~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~-------~l~~~-~~~~~~~~-~~~~~~ 236 (378) .|-++.. +...-+++....+.+...+...+...+..++.+++.+-..+++ -++.. .+...... .++..+ T Consensus 250 ~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~ 329 (488) T protein:vir:95 250 MPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSK 329 (488) T ss_pred ceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHH Confidence 3333331 1122233333444455544444443444455444433322332 12221 11122322 466677 Q ss_pred HHHHHhCCCH-HHh---cccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCH Q lcl|Aclame:pro 237 ELLTGYFMNE-NIL---LGTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) Q Consensus 237 ~Ia~~fgVPp-~~l---~~~~~-e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~ 311 (378) +|+.+.--.- .+- +|+++ .+.........+.-.++.|++.||++|+.+--.........+-+|.|+. ....|. T Consensus 330 ~Isk~iLGqtLT~~~~~~Gs~Al~~vh~ev~~~i~~aDa~~i~~tln~~li~~l~~~Nfg~~~~~P~~~~~~--~e~~Dl 407 (488) T protein:vir:95 330 QIMMAFMSDVLAMGQSKYGSFSLADSKTSLLAMSVDILLKQIKNVINRDLVAQTYALNMWDDEEHVQITYDD--IETPDL 407 (488) T ss_pred HHHHHHhccccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecC--cChhhH Confidence 8877643221 111 12222 2234555677788899999999999888653222111223344566654 466788 Q ss_pred HHHHHHHHHHHhCCCCCH-----HHHHHHhCCCCCCCCCeeeecccceecccchhcc--CccCCCCCCCCCCCC Q lcl|Aclame:pro 312 KELIDLYHENINGPIFTQ-----NQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQ--GSRKDVTSTDETNNQ 378 (378) Q Consensus 312 ~~~~~~~~~~~~~G~~t~-----NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~--~~~~~~~~~~e~~~e 378 (378) +++++++.+++..|+.-+ +.+|+.+|+|+-+.+.....+.-..+-...+... .+..........+.+ T Consensus 408 ~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (488) T protein:vir:95 408 EAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPADESQPVSEKLSPNSQSRSGDGYKTAGEGTAKTPSAKDPS 481 (488) T ss_pred HHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCccccccCCCCCCCCCCcccCCCcccCCcccccccch Confidence 999999999999998664 5689999999877666555443211111111000 000000001111111 No 135 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=98.99 E-value=2e-10 Score=73.72 Aligned_cols=373 Identities=13% Similarity=0.102 Sum_probs=194.8 Q ss_pred CCccccccc------------------cccccccCCc-cceeecccchhh-hh-hHHHHHHHHHHHhhhccCceEEEEec Q lcl|Aclame:pro 1 MNLFGKVVS------------------FSRGKLNNDT-QRVTAWQNEAVE-YT-SAFVTNIHNKIANEITKVEFNHVKYK 59 (378) Q Consensus 1 M~~f~~~~~------------------~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~v~~~i~~ia~~ia~~p~~~~~~~ 59 (378) +.+..+.+. .++.+....+ +.-..|+.++-. |. .+.++-.|..|++++|++.+..-+.+ T Consensus 7 lr~~rrpkg~~~a~~r~L~aAs~~~~dpg~~~~~~~g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL~as~id 86 (631) T protein:vir:10 7 LRLVRRPKGGRPAPSRALTAASQPLPDPSQVFSKSTGISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSRCRLVASELD 86 (631) T ss_pred eeeeecCCCCCccchhhhhhhhccccchhhhhhhhcCCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhceeeeEeeeec Confidence 222222220 0000111111 122345555432 22 36678889999999999999888887 Q ss_pred ccccccccceeccC---chHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCC---------ceEEEEee-- Q lcl|Aclame:pro 60 KSDVGSDTLISMAG---SDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNT---------GELLDLLF-- 125 (378) Q Consensus 60 ~~~~~~~~~~~~~~---~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~---------g~~~~~~~-- 125 (378) .+.+..-+.++..+ ..+.++...=+---+...++++.++.++-+-|++|+.+..+.+. ++...-|+ T Consensus 87 pDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~r~~~~W~~v 166 (631) T protein:vir:10 87 ENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSVRTRQEWYAV 166 (631) T ss_pred cCCCCCccccccCCchhHHHHHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCcccccccccceeec Confidence 77554433333211 22333333225566788999999999999999999987544332 22222332 Q ss_pred -------------------cCCeEEEee-eEEEEEc----cccCCccccchHHHHHHHHHHHH-------hcC----Ccc Q lcl|Aclame:pro 126 -------------------ADDKKEYKP-EELVRLT----SPFYINEDTSILDNALASIQTKL-------EQG----KLR 170 (378) Q Consensus 126 -------------------~~~~~~~~~-~dvih~r----~~~~~~~~~~~~~~~~~~i~~~~-------~~~----~~~ 170 (378) .+...+|.. .|++ || .|......-||+..++..+..-. +.+ .-+ T Consensus 167 t~~ei~~~~~g~g~~v~lp~g~~h~~~~~~D~l-~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl~gn 245 (631) T protein:vir:10 167 SKEEIKKSNKGSGTNIVLPTGEEHEFVKGTDII-FRVWIPKPRKASEPDSPVRAVLDSIREIVRTTKTIANASKSRLIGN 245 (631) T ss_pred cHHHHhcccCcccceeecCCCCccceecCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhC Confidence 122222221 2322 22 34444556777777766554321 111 224 Q ss_pred eeeeeCCcCCH---------------------HHHHHHHHHHHHHHHHhhcc--ccc-cceeEec------CCceeeecc Q lcl|Aclame:pro 171 GLLKINAFLDI---------------------DNTQEYREKALTTIKNMQEG--SSY-NGLTPVD------NKTEIVELK 220 (378) Q Consensus 171 gil~~~~~l~~---------------------~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~l~------~g~~~~~l~ 220 (378) |++..|..++= ...+++.+.+-+.....+.. +.+ .-++++. ++++.-.+. T Consensus 246 GvlflP~els~P~~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~~p~E~i~~i~hlkf~ 325 (631) T protein:vir:10 246 GVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAGVPGEQIKDVKHIRFD 325 (631) T ss_pred ceeEeccccccCCCCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEEeec Confidence 66666654431 13333333333221112221 111 1123331 123333333 Q ss_pred cchhhhhHHHHHHHHHHHHHHhCCCHHHhcccc-hHHHH------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccc Q lcl|Aclame:pro 221 KDYSVLNKDEIDLIKSELLTGYFMNENILLGTA-SQEQQ------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGN 293 (378) Q Consensus 221 ~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~-~e~~~------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~ 293 (378) ..-.......++..+.++|....|||..|.|.. +.+-+ ..-++-.|.|.+..|+++|++.+|.+.-...|... T Consensus 326 ~ei~e~aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWsAWqI~dedVrlHI~P~l~lic~AlT~q~Lrp~Le~eGvDp 405 (631) T protein:vir:10 326 NEITEVAIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWSAWQISDEDVQLHIAPVMEIFCQALTDQILRVTLAREGIDP 405 (631) T ss_pred CchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHHHHhCCCH Confidence 333333345567778899999999999886652 22221 23456679999999999999999998888888755 Q ss_pred cceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC------------------eeeeccccee Q lcl|Aclame:pro 294 LYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD------------------VYIANLNAVA 355 (378) Q Consensus 294 ~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD------------------~~~~~~n~~~ 355 (378) ..| -+-||.+.|- .|+ ++.+-+..+++.|.+|-...|+.+|+.--.+-| .-+.| +++| T Consensus 406 ~kY-vvW~DaS~Lt-~dP-dr~deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~~~~~a~~av~~dpaLip-~lAp 481 (631) T protein:vir:10 406 SKY-VVWYDPSQLT-IDP-DKSDEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREGWVMWAQDAVSKDPTLIP-MLAP 481 (631) T ss_pred HHh-EeeecCcccc-cCC-CCcHHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHHHHHHHHHHhhcccCcch-hhHH Confidence 544 4678877654 333 344556678899999999999999997643322 11111 1122 Q ss_pred c-----ccch---hcc---Ccc---CCCCCCCCCCCC Q lcl|Aclame:pro 356 V-----KNLS---DLQ---GSR---KDVTSTDETNNQ 378 (378) Q Consensus 356 ~-----~~~~---~~~---~~~---~~~~~~~e~~~e 378 (378) + .... .+. +++ +++.+.+++..| T Consensus 482 l~~~~~~~v~~P~~~a~~~~g~ed~~~~~~~~~g~~e 518 (631) T protein:vir:10 482 LIAGVLKQIEFPQQQAIDSGGNEDTSDADDLDDGEQE 518 (631) T ss_pred HHHHHhhhccCCCCCCCCCCCCCccccccccccCCCC Confidence 1 0000 000 000 000011111111 No 136 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=98.98 E-value=4.5e-10 Score=71.82 Aligned_cols=372 Identities=12% Similarity=0.098 Sum_probs=195.1 Q ss_pred CCccccccccc---c--------ccccCCccce---------eecccchhhh--hhHHHHHHHHHHHhhhccCceEEEEe Q lcl|Aclame:pro 1 MNLFGKVVSFS---R--------GKLNNDTQRV---------TAWQNEAVEY--TSAFVTNIHNKIANEITKVEFNHVKY 58 (378) Q Consensus 1 M~~f~~~~~~~---~--------~~~~~~~~~~---------~~~~~~~~~~--~~~~v~~~i~~ia~~ia~~p~~~~~~ 58 (378) +.+..+.++-- + ..++...... ..|+.++-.+ ..+.++-.|..|++++|++.+..-+. T Consensus 6 lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL~as~i 85 (629) T protein:vir:86 6 LRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRLIASAI 85 (629) T ss_pred eeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeeeEeeee Confidence 33333333210 0 0011111111 1355544222 24567888999999999999988888 Q ss_pred cccccccccceeccCch----HHHHHhccCC-CCCCHHHHHHHHHHHHHhcCCcEEEEEEeC-----CCceEEEEe---- Q lcl|Aclame:pro 59 KKSDVGSDTLISMAGSD----LDEVLNWSPK-GERNSMDFWRKVIKKLLSAPYVDLYAVFDD-----NTGELLDLL---- 124 (378) Q Consensus 59 ~~~~~~~~~~~~~~~~~----l~~lL~~~PN-~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~-----~~g~~~~~~---- 124 (378) +.+++..-..++. +++ +.++.. ++- --+-..++++.+..++-+-|++|+.+..++ ..|.++..| T Consensus 86 dpDtg~ptg~i~e-~~~~~~~v~~~v~-~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~~vt 163 (629) T protein:vir:86 86 DPDTGLPTGSIDE-DDRVGARVQQIVN-QIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALT 163 (629) T ss_pred cCCCCCCccccCC-CchhHHHHHHHHH-hhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhheeec Confidence 8776654443332 222 222222 122 234567799999999999999999876432 223333333 Q ss_pred ---------------ecCCeEEEee-eEEEEEc--c--ccCCccccchHHHHHHHHHHHH-------hcC----Ccceee Q lcl|Aclame:pro 125 ---------------FADDKKEYKP-EELVRLT--S--PFYINEDTSILDNALASIQTKL-------EQG----KLRGLL 173 (378) Q Consensus 125 ---------------~~~~~~~~~~-~dvih~r--~--~~~~~~~~~~~~~~~~~i~~~~-------~~~----~~~gil 173 (378) |.+...+|.. .+++ || + |......-||+..++..+..-. +.+ .-+|++ T Consensus 164 ~~ei~~~~~~~~i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~gnGvl 242 (629) T protein:vir:86 164 PEEVRASEKKTIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVV 242 (629) T ss_pred hHHhhhccCceeeEcCCCCcceeeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhCcee Confidence 3444444433 3444 44 3 3444556777777766554321 111 124555 Q ss_pred eeCCcCC----------------------HHHHHHHHHHHHHHHHHhhccc--cc-cceeEec------CCceeeecccc Q lcl|Aclame:pro 174 KINAFLD----------------------IDNTQEYREKALTTIKNMQEGS--SY-NGLTPVD------NKTEIVELKKD 222 (378) Q Consensus 174 ~~~~~l~----------------------~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~------~g~~~~~l~~~ 222 (378) ..+..++ ....+++.+-+.+.-...+... .+ .-++++. ++++.-.+... T Consensus 243 flP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hlkf~~e 322 (629) T protein:vir:86 243 FVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQ 322 (629) T ss_pred eeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEEeecCc Confidence 5443321 1133344444442222222221 11 1123321 12333333333 Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCHHHhcccc-hHHHH------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccc Q lcl|Aclame:pro 223 YSVLNKDEIDLIKSELLTGYFMNENILLGTA-SQEQQ------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLY 295 (378) Q Consensus 223 ~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~-~e~~~------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~ 295 (378) -.......++..+.++|....|||..|.|.. +.+-+ ..-++-.|.|.+..|+++|++.+|.+.-...|..... T Consensus 323 i~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le~eGiDp~k 402 (629) T protein:vir:86 323 VTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNA 402 (629) T ss_pred hhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHHHHhCCCHHH Confidence 3333345567778899999999999886652 22221 2345667999999999999999999888888875554 Q ss_pred eeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC-------------eeeecccc--------- Q lcl|Aclame:pro 296 YERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD-------------VYIANLNA--------- 353 (378) Q Consensus 296 ~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD-------------~~~~~~n~--------- 353 (378) | -+-||.+.|- .|+ ++.+-+..+++.|.+|-...|+.+|+.--.|-| .+-...++ T Consensus 403 Y-vvW~DaS~Lt-~dP-d~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li~~~a~l~~ 479 (629) T protein:vir:86 403 Y-VVWHDASQLT-VDP-DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIP 479 (629) T ss_pred h-EeeecCcccc-cCC-CCcHHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchhhhhhhhhh Confidence 4 4667877654 333 344556678899999999999999987533322 11111111 Q ss_pred ------eecccchhccC--ccCCCCCCCCCCCC Q lcl|Aclame:pro 354 ------VAVKNLSDLQG--SRKDVTSTDETNNQ 378 (378) Q Consensus 354 ------~~~~~~~~~~~--~~~~~~~~~e~~~e 378 (378) .|+......++ .+.+++.++..+++ T Consensus 480 ~~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ 512 (629) T protein:vir:86 480 ELADVEFPTPTVALPPAEEQDGDEEASGASRRE 512 (629) T ss_pred hhcccccCccCCCCCccccCCCcccccCCCcCC Confidence 12111111110 11111112221111 No 137 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=98.95 E-value=6.6e-10 Score=70.91 Aligned_cols=372 Identities=12% Similarity=0.096 Sum_probs=194.6 Q ss_pred CCccccccccc---c--------ccccCCccc---------eeecccchhhh--hhHHHHHHHHHHHhhhccCceEEEEe Q lcl|Aclame:pro 1 MNLFGKVVSFS---R--------GKLNNDTQR---------VTAWQNEAVEY--TSAFVTNIHNKIANEITKVEFNHVKY 58 (378) Q Consensus 1 M~~f~~~~~~~---~--------~~~~~~~~~---------~~~~~~~~~~~--~~~~v~~~i~~ia~~ia~~p~~~~~~ 58 (378) +.+..+.++-- + ..++..... -..|+.++-.+ ..+.++-.|..|++++|++.+..-+. T Consensus 6 lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL~as~i 85 (629) T protein:vir:99 6 LRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDDAWKAYDAVGELRYYVGWRSSSASRVRLIASAI 85 (629) T ss_pred eeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeeeEeeee Confidence 33333333200 0 001111111 11355554322 24567888999999999999988888 Q ss_pred cccccccccceeccCch----HHHHHhccCC-CCCCHHHHHHHHHHHHHhcCCcEEEEEEeC-----CCceEEEEe---- Q lcl|Aclame:pro 59 KKSDVGSDTLISMAGSD----LDEVLNWSPK-GERNSMDFWRKVIKKLLSAPYVDLYAVFDD-----NTGELLDLL---- 124 (378) Q Consensus 59 ~~~~~~~~~~~~~~~~~----l~~lL~~~PN-~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~-----~~g~~~~~~---- 124 (378) +.+++..-..++. +++ +.++.. ++- --+-..++++.+..++-+-|++|+.+..++ ..|.++..| T Consensus 86 dpDtg~ptg~i~e-~~~~~~~v~~~v~-~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~~vt 163 (629) T protein:vir:99 86 DPDTGLPTGSIDE-DDRVGARVQQIVN-QIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALT 163 (629) T ss_pred cCCCCCCccccCC-CchhHHHHHHHHH-hhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhheeec Confidence 8776654443332 222 222222 122 234567799999999999999999876432 223333333 Q ss_pred ---------------ecCCeEEEe-eeEEEEEc--c--ccCCccccchHHHHHHHHHHHH-------hcC----Ccceee Q lcl|Aclame:pro 125 ---------------FADDKKEYK-PEELVRLT--S--PFYINEDTSILDNALASIQTKL-------EQG----KLRGLL 173 (378) Q Consensus 125 ---------------~~~~~~~~~-~~dvih~r--~--~~~~~~~~~~~~~~~~~i~~~~-------~~~----~~~gil 173 (378) |.+...+|. ..|++ || + |......-||+..++..+..-. +.+ .-+|++ T Consensus 164 ~~ei~~~~~~~~i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~gnGvl 242 (629) T protein:vir:99 164 PEEVRASEKKTIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVV 242 (629) T ss_pred hHHhhhccCceeEEcCCCCccceeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhCcee Confidence 334444443 23444 44 2 3444556777777766554321 111 124565 Q ss_pred eeCCcCC----------------------HHHHHHHHHHHHHHHHHhhccc--cc-cceeEec------CCceeeecccc Q lcl|Aclame:pro 174 KINAFLD----------------------IDNTQEYREKALTTIKNMQEGS--SY-NGLTPVD------NKTEIVELKKD 222 (378) Q Consensus 174 ~~~~~l~----------------------~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~------~g~~~~~l~~~ 222 (378) ..+..++ ....+++.+-+.+.-...+... .+ .-++++. ++++.-.+... T Consensus 243 flP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hlkf~~e 322 (629) T protein:vir:99 243 FVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQ 322 (629) T ss_pred EeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEEeecCc Confidence 5443321 1133344444442222222221 11 1123321 12333333333 Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCHHHhcccc-hHHHH------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccc Q lcl|Aclame:pro 223 YSVLNKDEIDLIKSELLTGYFMNENILLGTA-SQEQQ------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLY 295 (378) Q Consensus 223 ~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~-~e~~~------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~ 295 (378) -.......++..+.++|....|||..|.|-. +.+-+ ..-++-.|.|.+..|+++|++.+|.+.-...|..... T Consensus 323 i~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le~eGiDp~k 402 (629) T protein:vir:99 323 VTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNA 402 (629) T ss_pred hhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHHHHhCCCHHH Confidence 3333345567778899999999999886652 22221 2345667999999999999999999888888875554 Q ss_pred eeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC-------------eeeecccc--------- Q lcl|Aclame:pro 296 YERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD-------------VYIANLNA--------- 353 (378) Q Consensus 296 ~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD-------------~~~~~~n~--------- 353 (378) | -+-||.+.|- .|+ ++.+-+..+++.|.+|-...|+.+|+.--.|-| .+-...++ T Consensus 403 Y-vvW~DaS~Lt-~dP-d~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li~~~a~l~~ 479 (629) T protein:vir:99 403 Y-VVWHDASQLT-VDP-DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIP 479 (629) T ss_pred h-EeeecCcccc-cCC-CCcHHHHHHHHcCCccHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchhhhhhhhhh Confidence 4 4667877654 333 344556678899999999999999987533322 11111111 Q ss_pred ------eecccchhcc--CccCCCCCCCCCCCC Q lcl|Aclame:pro 354 ------VAVKNLSDLQ--GSRKDVTSTDETNNQ 378 (378) Q Consensus 354 ------~~~~~~~~~~--~~~~~~~~~~e~~~e 378 (378) .|+......+ ..+.+++.++..+++ T Consensus 480 ~~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ 512 (629) T protein:vir:99 480 ELADVEFPTPTVALPPAEEQDGDEEASGASRRE 512 (629) T ss_pred hhcccccCccCCCCCccccCCCcccccCCCcCC Confidence 1211111111 011111112221111 No 138 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=98.94 E-value=1.2e-08 Score=64.11 Aligned_cols=359 Identities=10% Similarity=0.026 Sum_probs=169.7 Q ss_pred CCccccccccccc--------------cccCCcccee------ec----ccch-----hhh----hhHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MNLFGKVVSFSRG--------------KLNNDTQRVT------AW----QNEA-----VEY----TSAFVTNIHNKIANE 47 (378) Q Consensus 1 M~~f~~~~~~~~~--------------~~~~~~~~~~------~~----~~~~-----~~~----~~~~v~~~i~~ia~~ 47 (378) ..-+|+.+....- .......+.| .. .+.. +++ .-+-|.+|++.+... T Consensus 5 ~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l~~Rk~a 84 (512) T protein:vir:19 5 LDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSELSKRRLA 84 (512) T ss_pred eCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHHHHHH Confidence 3334444332110 0001111111 00 0111 111 345689999999999 Q ss_pred hccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCc--eEEEEee Q lcl|Aclame:pro 48 ITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTG--ELLDLLF 125 (378) Q Consensus 48 ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g--~~~~~~~ 125 (378) |.+++|.|......+. .++ ..-.-+...|...| ...+++..+. +.+.+|-+...++|+-..| .+..+.+ T Consensus 85 v~~~~w~I~p~~~~~~-~~~---~~a~~v~~~l~~~~----~f~~~~~~ll-dA~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (512) T protein:vir:19 85 IQALEWRIAPARDASA-QEK---KDADMLNEYLHDAA----WFEDALFDAG-DAILKGYSMQEIEWGWLGKMRVPVALHH 155 (512) T ss_pred HhCCCceEecCCCCCH-HHH---HHHHHHHHHHhcCC----CHHHHHHHHH-hhhhhcceeeeeEeeeeCCceeeeeeee Confidence 9999998853221110 000 01122344454334 2455555543 5667899988887753333 3332221 Q ss_pred c----------C-----------CeEEEeeeEE-EEEccccCCc-cccchHHHHHHHH----------HHHH-hcCCcce Q lcl|Aclame:pro 126 A----------D-----------DKKEYKPEEL-VRLTSPFYIN-EDTSILDNALASI----------QTKL-EQGKLRG 171 (378) Q Consensus 126 ~----------~-----------~~~~~~~~dv-ih~r~~~~~~-~~~~~~~~~~~~i----------~~~~-~~~~~~g 171 (378) - + .+..+++... +|...+.+++ .|.+++..+.-.. ..+. .-|.|-- T Consensus 156 r~~~~f~~~~~~~~~lr~~~~~~~G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (512) T protein:vir:19 156 RDPALFCANPDNLNELRLRDASYHGLELQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMR 235 (512) T ss_pred eccccceeccCCCcEEEecCCCCCceeecCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee Confidence 1 0 1223443333 3332222222 2556655543221 1111 2466666 Q ss_pred eeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHH-hCCCHHHh- Q lcl|Aclame:pro 172 LLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTG-YFMNENIL- 249 (378) Q Consensus 172 il~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~-fgVPp~~l- 249 (378) +.+++...++++.+++.+.+.+ . +.+++.+++-+..+++...+....+......++..++|+.+ +|=--..- T Consensus 236 igky~~~a~~~ek~~L~~al~~----~--~~~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~iLGqtlTs~~ 309 (512) T protein:vir:19 236 VGKYPTGSTNREKATLMQAVMD----I--GRRAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAILGGTLTTEA 309 (512) T ss_pred EEecCCCCCHHHHHHHHHHHHH----H--hhCcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 7777766666655544444433 2 12344444444444444443222222223347777888876 22211111 Q ss_pred c--ccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcccc----ceeeEEecchhhhhcCHHHHHHHHHHHH Q lcl|Aclame:pro 250 L--GTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL----YYERIIVDNQLFKFATLKELIDLYHENI 322 (378) Q Consensus 250 ~--~~~~-e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~----~~~~~~~d~~~l~~~d~~~~~~~~~~~~ 322 (378) + |+++ .+....-....+...++.|++.||+.|+.+-- ...++.. .+-++.|+. ....|.+..++.+.++. T Consensus 310 g~~Gs~a~~~vh~ev~~di~~aDa~~i~~tln~~li~~l~-~~N~~~~~~~~~~p~~~f~~--~e~eDl~~~a~~~~~l~ 386 (512) T protein:vir:19 310 GDKGARSLGEVHDEVRREIRNADVGQLARSINRDLIYPLL-ALNSDSTIDINRLPGIVFDT--SEAGDITALSDAIPKLA 386 (512) T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCCccccceEEecC--CChhhHHHHHHHHHHHh Confidence 1 1122 12234556777889999999999998876432 2222211 133456654 36678888999888876 Q ss_pred hCCC-CCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 323 NGPI-FTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 323 ~~G~-~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .|+ ++..++|+.+|+|.-..++....+.-..|-...........+..+..+.-++ T Consensus 387 -~G~~i~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 442 (512) T protein:vir:19 387 -AGMRIPVSWIQEKLHIPQPVGDEAVFTIQPVVPDNGSQKEAALSAEDIPQEDDIDR 442 (512) T ss_pred -cCCCCCHHHHHHHhCCCCCCCccccccCCCccccccccccccccccCCCchhhHhH Confidence 565 8999999999997655555443322111111000000000000000000011 No 139 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=98.93 E-value=1.8e-09 Score=68.53 Aligned_cols=373 Identities=14% Similarity=0.089 Sum_probs=193.8 Q ss_pred CCccccccc---------------cccccc-c-CCccceeecccchhhh-h-hHHHHHHHHHHHhhhccCceEEEEeccc Q lcl|Aclame:pro 1 MNLFGKVVS---------------FSRGKL-N-NDTQRVTAWQNEAVEY-T-SAFVTNIHNKIANEITKVEFNHVKYKKS 61 (378) Q Consensus 1 M~~f~~~~~---------------~~~~~~-~-~~~~~~~~~~~~~~~~-~-~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 61 (378) +.+-.+.+. ..+... + ......+.|+.++-.+ . .+.++-.+..|++++|++.+..-+.+.+ T Consensus 6 lrv~rrpk~~p~~r~l~aasqp~~P~~~~~~~~~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~ss~Sr~rL~as~idpD 85 (629) T protein:vir:10 6 LRVSRRPKGSPARRSLTAASQPMEPGRTPSRQVAGTVVRTSWQNEAWECMDLVGELRYYVGWRASSCSRVELIASELDPD 85 (629) T ss_pred eeEEecCCCccceeeeccccCCCCcchhhchhhhhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhhhheeeeEEEeeecCC Confidence 122211110 000000 0 0111134666665333 2 2567888999999999999988888776 Q ss_pred ccccccceeccCchH-HHH---HhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC---CceEEEEe---------- Q lcl|Aclame:pro 62 DVGSDTLISMAGSDL-DEV---LNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN---TGELLDLL---------- 124 (378) Q Consensus 62 ~~~~~~~~~~~~~~l-~~l---L~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~---~g~~~~~~---------- 124 (378) ++..-+.++. +||- .++ .+.=----+-..++++.+..++-+-|+.|++++-+.. .+.+..-| T Consensus 86 tg~ptg~i~e-d~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~~~r~~W~vVt~~Ei~~ 164 (629) T protein:vir:10 86 TGKPTGGIRD-DDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDGSVRHNWYVVTNDEVKN 164 (629) T ss_pred CCCCcccccc-CchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCcccccceeeecHHHhcc Confidence 6654443332 2222 111 1111123355677899999999999999998764321 11122122 Q ss_pred ----------ecCCeEEEeee-EEEEEc--c--ccCCccccchHHHHHHHHHHHH-------hcC----CcceeeeeCCc Q lcl|Aclame:pro 125 ----------FADDKKEYKPE-ELVRLT--S--PFYINEDTSILDNALASIQTKL-------EQG----KLRGLLKINAF 178 (378) Q Consensus 125 ----------~~~~~~~~~~~-dvih~r--~--~~~~~~~~~~~~~~~~~i~~~~-------~~~----~~~gil~~~~~ 178 (378) |++...+|..+ |++ || + |......-||+.+++..+..-. +.+ .-+|++..+.. T Consensus 165 kg~g~~~i~lpdg~~he~~~~~D~l-~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aakSRL~gnGvlflP~e 243 (629) T protein:vir:10 165 KGAGKTDIELPDGTIHEYSKGRDVM-FRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNASKSRLIGNGVVFLPQE 243 (629) T ss_pred ccCceeEEEcCCCceeeeeCCCeeE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHhHHhhCceeEeccC Confidence 23333444332 333 23 3 4444556788777776654321 111 12456555433 Q ss_pred CC----------------------HHHHHHHHHHHHHHHHHhhcccc-ccc--eeEe----cCCceeeecccch--hhhh Q lcl|Aclame:pro 179 LD----------------------IDNTQEYREKALTTIKNMQEGSS-YNG--LTPV----DNKTEIVELKKDY--SVLN 227 (378) Q Consensus 179 l~----------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l----~~g~~~~~l~~~~--~~~~ 227 (378) ++ ....+.+.+-|.+.....+...+ ... ++++ +..-+++.|.... .+.. T Consensus 244 ~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~E~l~~ikhLkf~~eite~~ 323 (629) T protein:vir:10 244 LSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPGEHLQKIFHLKIGNEITEVE 323 (629) T ss_pred cccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeechHHhcCeeeeeecCchhHHH Confidence 22 01233444444333322222211 111 2222 1122445554433 3333 Q ss_pred HHHHHHHHHHHHHHhCCCHHHhcccc-hHHHH------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEE Q lcl|Aclame:pro 228 KDEIDLIKSELLTGYFMNENILLGTA-SQEQQ------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERII 300 (378) Q Consensus 228 ~~~~~~~~~~Ia~~fgVPp~~l~~~~-~e~~~------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~ 300 (378) ...++..+.++|....|||..|.|.. +.+-+ ..-++-.|.|.+..|+++|++.+|.+.-...|.....|+ +- T Consensus 324 iktR~daI~RlAmglDispErLLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~Ait~~~Lrp~L~~eGiDp~~Yv-vw 402 (629) T protein:vir:10 324 IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVQLHIKPVMEVLCAAIYREVLVATLRAEGIDPDRYV-LW 402 (629) T ss_pred HhhHHHHHHHHHhccCCChhheeeccCCccceeeEEecccceeeecchHHHHHHHHHHhHHHHHHHHHhCCCHHHhE-ee Confidence 45567778899999999999886652 22222 234566799999999999999999888888887555553 66 Q ss_pred ecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCC--e-----------eeecccce----ec-----cc Q lcl|Aclame:pro 301 VDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGD--V-----------YIANLNAV----AV-----KN 358 (378) Q Consensus 301 ~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD--~-----------~~~~~n~~----~~-----~~ 358 (378) ||.+.|- .|+. +.+-+..+...|.+|-...|+.+|+.--.+-| + +.-+-+++ |+ .. T Consensus 403 ~DaS~Lt-~dPd-~~deA~~a~drGaIt~eAlRr~lG~~~dd~y~~~t~~~~q~~A~~~v~~~P~Li~~~apll~~~l~~ 480 (629) T protein:vir:10 403 YDASGLT-VDPD-KTDEATAAKEQGAITHEAYRRYLGLADEDGYDLETLEGAQAWARDAIVADPSLIKVLAPLLTDELAE 480 (629) T ss_pred ecCcccc-cCCC-CcHHHHHHHHcCCccHHHHHHHhccccccCCCcCCcHHHHHHHHHHhcCCCchhhhhhhhcCCcccc Confidence 7876543 4443 44445678899999999999999986543322 1 11111111 11 10 Q ss_pred ------------chhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 359 ------------LSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 359 ------------~~~~~~~~~~~~~~~e~~~e 378 (378) ....+..++++..++|+..| T Consensus 481 i~~P~p~~a~~~~~~~~~~~E~~~~~~e~~~e 512 (629) T protein:vir:10 481 IDWPEPPAALPPGEDDQADEEQDTTGSEPSTE 512 (629) T ss_pred ccccCCCCcCCCCCcccCccccCCCCCCcCCC Confidence 01111111112222222222 No 140 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=98.88 E-value=1.9e-08 Score=62.90 Aligned_cols=348 Identities=10% Similarity=-0.011 Sum_probs=168.1 Q ss_pred ccccccccccc--------------------c-ccCCccc--------eeeccc-----chhhhhhHHHHHHHHHHHhhh Q lcl|Aclame:pro 3 LFGKVVSFSRG--------------------K-LNNDTQR--------VTAWQN-----EAVEYTSAFVTNIHNKIANEI 48 (378) Q Consensus 3 ~f~~~~~~~~~--------------------~-~~~~~~~--------~~~~~~-----~~~~~~~~~v~~~i~~ia~~i 48 (378) +-.|.++.... . .+....+ +.-+.. +.+ ..-+.|.+|++.+...| T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m-~~D~hi~s~l~~Rk~av 79 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKM-LSDGTVKNALNYIFGRI 79 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhccccchHHHHHH-hhChHHHHHHHHHHHHH Confidence 11111111000 0 0000000 000010 111 13456899999999999 Q ss_pred ccCceEEEEecccccccccceeccCchHHHHHhccCCCC---CCHHHHHHHHHHHHHhcCCcEEEEEEe-CCCceEE--E Q lcl|Aclame:pro 49 TKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGE---RNSMDFWRKVIKKLLSAPYVDLYAVFD-DNTGELL--D 122 (378) Q Consensus 49 a~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~---~s~~~f~~~~~~~~ll~Gna~~~~~~~-~~~g~~~--~ 122 (378) .+++|.|-... +...+. .. -..+...|. .|+.. .++.+++.. +.+.+++|-++..++|+ ...|... . T Consensus 80 ~~~~w~v~p~~--~~~~~~--~~-ae~v~~~l~-~~~~~~~~~~f~~~~~~-~lda~~~G~s~~Eivw~~~~~g~~~~~~ 152 (448) T protein:vir:79 80 RSAKWYVEPAS--TDPEDI--AI-AAFIHAQLG-IDDASVGKYPFGRLFAI-YENAYIYGMAAGEIVLTLGADGKLILDK 152 (448) T ss_pred hcCCceEecCC--CCHHHH--HH-HHHHHHHhh-hhhhhhccCCHHHHHHH-HHHhhhhcceeEEEEeeecCCCceeccc Confidence 99999984321 111111 01 111223332 23322 244455544 45567889999888875 2344321 1 Q ss_pred E-------------eecC------------------CeEEEeeeEEEEEccccCCc-cccchHHHHHHHHH--------- Q lcl|Aclame:pro 123 L-------------LFAD------------------DKKEYKPEELVRLTSPFYIN-EDTSILDNALASIQ--------- 161 (378) Q Consensus 123 ~-------------~~~~------------------~~~~~~~~dvih~r~~~~~~-~~~~~~~~~~~~i~--------- 161 (378) + .+++ ..+.+|..-++|..+..+++ .|.+++..+.-..- T Consensus 153 l~~r~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w 232 (448) T protein:vir:79 153 IVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLHNDDGSFTGQSALRAAVPHWLAKRALILLI 232 (448) T ss_pred ccccCCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEecCccCCcccchhHHHHHHHHHHHHHHHHHH Confidence 1 0111 12234566777776443332 24566655543221 Q ss_pred -HHH-hcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHH Q lcl|Aclame:pro 162 -TKL-EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSEL 238 (378) Q Consensus 162 -~~~-~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~I 238 (378) .+. .-|.|--+.+++...+++. +.++.+.+...+...+.+++ ++++.|++++-++......+. +.+++..++| T Consensus 233 ~~f~E~yG~P~~vgky~~ga~~~~--~~~~~l~~av~~i~~g~~a~--~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~I 308 (448) T protein:vir:79 233 NHGLERFMIGVPTLTIPKSVRQGT--KQWEAAKEIVKNFVQKPRHG--IILPDDWKFDTVDLKSAMPDAIPYLTYHDAGI 308 (448) T ss_pred HHHHHHcCCceEEEecCCCCCcCH--HHHHHHHHHHHHHhcCCceE--EEecCCceEEEEecCCCcccHHHHHHHHHHHH Confidence 111 2355555667765443221 12344444454444455554 445666665544332222232 3346777788 Q ss_pred HHHhCCCHHHh----cccchHH--HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcc-ccceeeEEecchhhhhcCH Q lcl|Aclame:pro 239 LTGYFMNENIL----LGTASQE--QQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG-NLYYERIIVDNQLFKFATL 311 (378) Q Consensus 239 a~~fgVPp~~l----~~~~~e~--~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~-~~~~~~~~~d~~~l~~~d~ 311 (378) +.+.-=. .+- +|+++.. .........+.--+++|++.||+.|+.+-- ...++ ...+-+|.|+. ....|. T Consensus 309 sk~iLGq-tlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~-~lNfg~~~~~P~~~f~~--~e~~Dl 384 (448) T protein:vir:79 309 ARALGID-FNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLV-LPNWPSATRFPRLTFEM--EERNDF 384 (448) T ss_pred HHHHhhh-hhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcCCCcEEEecC--CChHHH Confidence 7764211 111 1222222 223445667788999999999998876431 11121 22233566664 366788 Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCC-CCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 312 KELIDLYHENINGPIFTQNQLLVKMGEQP-IEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 312 ~~~~~~~~~~~~~G~~t~NE~R~~~gl~p-~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) +..++.+.+++..+-...+-+|+.+|+|. .|+ +....+ + . .....+......|++ T Consensus 385 ~~~a~~~~~l~~~~~~~~~~~~~~~~~p~~~~~-~~~~a~----~-----~--~~~~~~~~~~~~~~~ 440 (448) T protein:vir:79 385 SAAANLMGMLINAVKDSEDIPTELKALIDALPS-KMRRAL----G-----V--VDEVREAVRQPADSR 440 (448) T ss_pred HHHHHHhhhhhccchhhHHHHHHhhcCCCCCCC-cccccc----C-----C--CCcccccccCCcccc Confidence 99999999999887665566788889984 333 221110 0 0 011112223444555 No 141 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=98.83 E-value=6.5e-09 Score=65.49 Aligned_cols=350 Identities=11% Similarity=0.073 Sum_probs=155.0 Q ss_pred CCccccccccccccccCC-ccceeecccc---hhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc------ccccce- Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNND-TQRVTAWQNE---AVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV------GSDTLI- 69 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~------~~~~~~- 69 (378) |.| + ...+..- +..-+.+-+. +.-...+-+++|+..||..+..- |.......... ...+.. T Consensus 92 ~~~-~------~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~ 163 (695) T protein:vir:78 92 LDF-N------GTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAA 163 (695) T ss_pred hcc-c------ccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cceeccccchhhhhhccccccccc Confidence 332 0 0000000 0000111111 11113456789999999888664 53321110000 000000 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC----------------CceEEEEe--------e Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN----------------TGELLDLL--------F 125 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~----------------~g~~~~~~--------~ 125 (378) ...+..--+.|..+=..+.-+..|.+. +.+--++|-+.+++..++. .|.+..+. | T Consensus 164 ~~~d~dqi~~L~~e~erL~V~~~l~ea-ik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP 242 (695) T protein:vir:78 164 STSDGDQLKQINDEIERLRIRDAVRTT-VIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTP 242 (695) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccceEEEEEeccCccccccccccccccccCcceeeeEeeccccccc Confidence 000111112222111112222333343 3444456766666544321 12222221 1 Q ss_pred cC-------------------CeEEEeeeEEEEEcc--------ccCCccccchHHHHHHHHHHHHh----------cCC Q lcl|Aclame:pro 126 AD-------------------DKKEYKPEELVRLTS--------PFYINEDTSILDNALASIQTKLE----------QGK 168 (378) Q Consensus 126 ~~-------------------~~~~~~~~dvih~r~--------~~~~~~~~~~~~~~~~~i~~~~~----------~~~ 168 (378) .. .+..|..+.++.|.. +.+...|.|..+.+...+..+.. ... T Consensus 243 ~~~n~~dP~spdfgkP~~y~V~G~kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~ 322 (695) T protein:vir:78 243 NNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS 322 (695) T ss_pred chhhhccchhhccCCCceEEEeceEEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhh Confidence 00 112456666666642 12234578887777766655432 112 Q ss_pred cceeeeeC--CcCCHHHHHHHHHH--HHHHHHHhhccccccceeEec-CCceeeecccchhhhhHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 169 LRGLLKIN--AFLDIDNTQEYREK--ALTTIKNMQEGSSYNGLTPVD-NKTEIVELKKDYSVLNKDEIDLIKSELLTGYF 243 (378) Q Consensus 169 ~~gil~~~--~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fg 243 (378) .+++ .++ ..+.+....++..+ +-++++ +| .++++++ ..-+|.+.+.+...++--.+++ ...||.+-+ T Consensus 323 v~~l-k~dla~~L~~g~~~~l~~R~eli~~~R-----sn-~G~~llDk~~Eefeq~stslSGLddVi~qf-~q~VAgaa~ 394 (695) T protein:vir:78 323 VSGI-LMDLAQALMPGANVDLSMRAELINRYR-----DN-RNILFLDKATEEFFQFNTPLSGLDALQAQA-QEQMSAVSH 394 (695) T ss_pred hHHH-HHHHHHhhcChhHHHHHHHHHHHHHhc-----Cc-cceEEEecCCcceEEEecccCCHHHHHHHH-HHHHHhhhc Confidence 2222 111 12222222222222 222332 33 3577788 4789999987776665333333 468899888 Q ss_pred CCHHHhccc-------chHHHHHH-------HHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhc Q lcl|Aclame:pro 244 MNENILLGT-------ASQEQQIY-------FYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFA 309 (378) Q Consensus 244 VPp~~l~~~-------~~e~~~~~-------f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~ 309 (378) ||...|-|. +.|...+. .-+.-|.|.++.+-+-+-+..|.. .... +.|.+..|.+. T Consensus 395 IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~--------idpd--i~~~fnPL~qm 464 (695) T protein:vir:78 395 IPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA--------VDPS--IKWQWNALREL 464 (695) T ss_pred CchhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCc--ceEEeCCCCCc Confidence 887766332 12322333 334568888888777776655432 2223 44445577777 Q ss_pred CHHHHHHH-------HHHHHhCCCCCHHHHHHHhCCCCCCC-------CCeeeecccc-eecccchhccCccCCCCCCCC Q lcl|Aclame:pro 310 TLKELIDL-------YHENINGPIFTQNQLLVKMGEQPIEG-------GDVYIANLNA-VAVKNLSDLQGSRKDVTSTDE 374 (378) Q Consensus 310 d~~~~~~~-------~~~~~~~G~~t~NE~R~~~gl~p~~g-------GD~~~~~~n~-~~~~~~~~~~~~~~~~~~~~e 374 (378) +.++++++ ...++..|+++++|+|..+.-+|--+ .|.+-+|... ++.. +.-.++..+..+-++. T Consensus 465 td~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 543 (695) T protein:vir:78 465 DDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV-LTYVQRLAEGGDTGAP 543 (695) T ss_pred CHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhh-HhhhcCcccccccCCC Confidence 77766554 56778899999999999987765321 2333333211 1100 0000000000000000 Q ss_pred CC------------CC Q lcl|Aclame:pro 375 TN------------NQ 378 (378) Q Consensus 375 ~~------------~e 378 (378) ++ |. T Consensus 544 ~~~~~g~~~~~~~~~~ 559 (695) T protein:vir:78 544 GGARAGATAPPTVANV 559 (695) T ss_pred CCCCCCCCCCCceeee Confidence 00 00 No 142 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=98.82 E-value=7.3e-09 Score=65.20 Aligned_cols=354 Identities=11% Similarity=0.062 Sum_probs=155.3 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc------ccccce-eccC Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV------GSDTLI-SMAG 73 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~------~~~~~~-~~~~ 73 (378) |.| +.. ...+..--...+|-.+..=+.-...+-+++|+..||..+..- |.......... ...+.. ...+ T Consensus 91 ~~~-~~~--~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~d 166 (694) T protein:vir:10 91 LDF-NGT--SMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTSD 166 (694) T ss_pred hcc-Ccc--cccchhhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cceeccccchhhhhhccccccccccccc Confidence 332 000 000000000001111110011113456789999999988664 53321110000 000000 0001 Q ss_pred chHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC----------------CceEEEEe--------ecC-- Q lcl|Aclame:pro 74 SDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN----------------TGELLDLL--------FAD-- 127 (378) Q Consensus 74 ~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~----------------~g~~~~~~--------~~~-- 127 (378) ..--+.|..+=..+.-+..|.+. +.+--++|-+.+++..++. .|.+..+. |.. T Consensus 167 ~dqi~~L~~e~erl~V~~~l~ea-ik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n 245 (694) T protein:vir:10 167 GDQLKQINDEIERLRIRDAVRTT-VIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN 245 (694) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhccccceEEEEEeecCccccccccccccccccCcceeeeEeecccccccchhh Confidence 11112222111112222333343 3444456767666543321 12222221 100 Q ss_pred -----------------CeEEEeeeEEEEEcc--------ccCCccccchHHHHHHHHHHHHhc----------CCccee Q lcl|Aclame:pro 128 -----------------DKKEYKPEELVRLTS--------PFYINEDTSILDNALASIQTKLEQ----------GKLRGL 172 (378) Q Consensus 128 -----------------~~~~~~~~dvih~r~--------~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~gi 172 (378) .+..|..+.++.|.. +.+...|.|..+.+...+..+... ...+++ T Consensus 246 ~~dP~spdfgkP~~y~V~G~~IH~SRL~~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~l 325 (694) T protein:vir:10 246 SINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGI 325 (694) T ss_pred hccchhhccCCCceEEEeceEEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHH Confidence 112456666666642 122345788877777666554321 122222 Q ss_pred eeeC--CcCCHHHHHHHHHH--HHHHHHHhhccccccceeEec-CCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHH Q lcl|Aclame:pro 173 LKIN--AFLDIDNTQEYREK--ALTTIKNMQEGSSYNGLTPVD-NKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNEN 247 (378) Q Consensus 173 l~~~--~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~ 247 (378) .++ ..+.+....++..+ +-++++ +| .++++++ ..-+|.+.+.+...++--.+++ ...||.+-+||.. T Consensus 326 -k~dla~~L~~g~~~~l~~R~eli~~~R-----sn-~G~~llDk~~Eefeq~stslSGLddVi~qf-~q~VAgaa~IPlt 397 (694) T protein:vir:10 326 -LMDLAQALMPGANVDLSMRAELINRYR-----DN-RNILFLDKATEEFFQFNTPLSGLDALQAQA-QEQMSAVSHIPLI 397 (694) T ss_pred -HHHHHHhhcChhHHHHHHHHHHHHHhc-----Cc-cceEEEecCCcceEEEecccCCHHHHHHHH-HHHHHhhhcCchh Confidence 111 12222222222222 222332 33 3577788 4789999987776665333333 4688988888877 Q ss_pred Hhccc-------chHHHHHH-------HHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHH Q lcl|Aclame:pro 248 ILLGT-------ASQEQQIY-------FYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKE 313 (378) Q Consensus 248 ~l~~~-------~~e~~~~~-------f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~ 313 (378) .|-|. +.|...+. .-+.-|.|.++.+-+-+-+..|.. .... +.|.+..|.+.+.++ T Consensus 398 kLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~--------idp~--i~~~fnPL~qmtd~E 467 (694) T protein:vir:10 398 KLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA--------VDPS--IKWQWNALRELDDLE 467 (694) T ss_pred hhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCc--ceEEeCCCCCcCHHH Confidence 66332 12322333 334568888888777776655432 2223 444445777777776 Q ss_pred HHHH-------HHHHHhCCCCCHHHHHHHhCCCCCCC-------CCeeeecccc-eecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 314 LIDL-------YHENINGPIFTQNQLLVKMGEQPIEG-------GDVYIANLNA-VAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 314 ~~~~-------~~~~~~~G~~t~NE~R~~~gl~p~~g-------GD~~~~~~n~-~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++++ ...++..|+++++|+|..+.-+|--+ .|.+-+|... ++.. +.-.++..+..+-++.++-. T Consensus 468 kAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 546 (694) T protein:vir:10 468 VAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV-LTYVQRLAEGGDTGAPGGAR 546 (694) T ss_pred HHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhh-HhhhcCcccccccCCCCccc Confidence 6554 56778899999999999987765321 2333333211 1100 00000000000000000000 No 143 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=98.82 E-value=7.7e-09 Score=65.06 Aligned_cols=350 Identities=11% Similarity=0.070 Sum_probs=154.2 Q ss_pred CCccccccccccccccCC-ccceeecccc---hhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc------ccccce- Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNND-TQRVTAWQNE---AVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV------GSDTLI- 69 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~------~~~~~~- 69 (378) |.| + ...+..- +..-+.+-+. +.-...+-+++|+..||..+..- |.......... ...+.. T Consensus 92 ~~~-~------~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~ 163 (695) T protein:vir:36 92 LDF-N------GTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAA 163 (695) T ss_pred hcc-c------ccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cceecccchhhhhhcccccccccc Confidence 332 0 0000000 0000111111 11113456789999999888664 53321110000 000000 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC----------------CceEEEEe--------e Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN----------------TGELLDLL--------F 125 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~----------------~g~~~~~~--------~ 125 (378) ...+.+--+.|..+=..+.-+..|.+ .+.+--++|-+.+++..++. .|.+..+. | T Consensus 164 ~~~d~dqik~L~~e~erL~V~~~l~e-aik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP 242 (695) T protein:vir:36 164 STSDGDQLKQINDEIERLRIRDAVRT-TVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTP 242 (695) T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHH-HHHhhccccceEEEEEeccCccccccccccccccccCcceeeeEeeccccccc Confidence 00011111222211111111222333 34444456777666544321 12222221 1 Q ss_pred cC-------------------CeEEEeeeEEEEEcc--------ccCCccccchHHHHHHHHHHHHhc----------CC Q lcl|Aclame:pro 126 AD-------------------DKKEYKPEELVRLTS--------PFYINEDTSILDNALASIQTKLEQ----------GK 168 (378) Q Consensus 126 ~~-------------------~~~~~~~~dvih~r~--------~~~~~~~~~~~~~~~~~i~~~~~~----------~~ 168 (378) .. .+..|..+.++.|.. +.+...|.|..+.+...+..+... .. T Consensus 243 ~~~n~~dP~spdfgkP~~y~V~G~kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~ 322 (695) T protein:vir:36 243 NNYNSINPVADDFYKPSTWWMIGTEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS 322 (695) T ss_pred chhhhccchhhccCCCceEEEeceEEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhh Confidence 00 112456666666642 122345788877777666554321 12 Q ss_pred cceeeeeC--CcCCHHHHHHHHHH--HHHHHHHhhccccccceeEec-CCceeeecccchhhhhHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 169 LRGLLKIN--AFLDIDNTQEYREK--ALTTIKNMQEGSSYNGLTPVD-NKTEIVELKKDYSVLNKDEIDLIKSELLTGYF 243 (378) Q Consensus 169 ~~gil~~~--~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fg 243 (378) ..++ .++ ..+.+....++..+ +-++++ +| .++++++ ..-+|.+.+.+...++--.+++ ...||.+-+ T Consensus 323 v~~l-k~dla~aL~~g~~~~l~~R~eli~~~R-----sn-~G~~llDk~~Eefeq~stslSGLddVi~qf-~q~VAgaa~ 394 (695) T protein:vir:36 323 VSGI-LMDLAQALMPGANVDLSMRAELINRYR-----DN-RNILFLDKATEEFFQFNTPLSGLDALQAQA-QEQMSAVSH 394 (695) T ss_pred HHHH-HHHHHHhhcChhHHHHHHHHHHHHHhc-----Cc-cceEEEecCCcceEEEecccCCHHHHHHHH-HHHHHhhhc Confidence 2222 111 11222222222222 222332 33 3577788 4789999987776665333333 468898888 Q ss_pred CCHHHhccc-------chHHHHHH-------HHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhc Q lcl|Aclame:pro 244 MNENILLGT-------ASQEQQIY-------FYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFA 309 (378) Q Consensus 244 VPp~~l~~~-------~~e~~~~~-------f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~ 309 (378) ||...|-|. +.|...+. .-+.-|.|.++.+-+-+-+..|.. .... +.|.+..|.+. T Consensus 395 IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~--------idpd--i~~~fnPL~qm 464 (695) T protein:vir:36 395 IPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA--------VDPS--IKWQWNALREL 464 (695) T ss_pred CchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCc--ceEEeCCCCCc Confidence 887766332 12322333 334568888888777776655432 2223 44445577777 Q ss_pred CHHHHHHH-------HHHHHhCCCCCHHHHHHHhCCCCCCC-------CCeeeecccc-eecccchhccCccCCCCCCCC Q lcl|Aclame:pro 310 TLKELIDL-------YHENINGPIFTQNQLLVKMGEQPIEG-------GDVYIANLNA-VAVKNLSDLQGSRKDVTSTDE 374 (378) Q Consensus 310 d~~~~~~~-------~~~~~~~G~~t~NE~R~~~gl~p~~g-------GD~~~~~~n~-~~~~~~~~~~~~~~~~~~~~e 374 (378) +.++++++ ...++..|+++++|+|..+.-+|--+ .|.+-+|... ++.. +.-.++..+..+-++. T Consensus 465 td~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 543 (695) T protein:vir:36 465 DDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV-LTYVQRLAEGGDTGAP 543 (695) T ss_pred CHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhh-HhhhcCcccccccCCC Confidence 77766554 56778899999999999987765321 2333333211 1100 0000000000000000 Q ss_pred CCCC Q lcl|Aclame:pro 375 TNNQ 378 (378) Q Consensus 375 ~~~e 378 (378) ++-. T Consensus 544 ~~~~ 547 (695) T protein:vir:36 544 GGAR 547 (695) T ss_pred Cccc Confidence 0000 No 144 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=98.77 E-value=3.9e-08 Score=61.19 Aligned_cols=324 Identities=13% Similarity=0.115 Sum_probs=163.5 Q ss_pred CCcc--cccc--------------ccccccccCCcccee-e----ccc----chhhhhhHHHHHHHHHHHhhhccCceEE Q lcl|Aclame:pro 1 MNLF--GKVV--------------SFSRGKLNNDTQRVT-A----WQN----EAVEYTSAFVTNIHNKIANEITKVEFNH 55 (378) Q Consensus 1 M~~f--~~~~--------------~~~~~~~~~~~~~~~-~----~~~----~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 55 (378) ||+= +... .+.+++.+ ...... + +.+ +....+-+.|.+|++.+...|.+++|.| T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~-~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av~~~~w~V 79 (446) T protein:vir:98 1 MNMEVRNAPTPAIRRRTIYAMEHLGLATSYLS-EDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSVLNKVGPY 79 (446) T ss_pred CcccccCCCchhhhhhhhhccccchhhcccCC-cchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHhhcCCcee Confidence 3321 1000 01111111 100000 0 000 1111234679999999999999999988 Q ss_pred EEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceE---------E----- Q lcl|Aclame:pro 56 VKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGEL---------L----- 121 (378) Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~---------~----- 121 (378) --. . + +. -.-+.+.|...+ .+.....+.+.+.+|-++..++|+...|.- + T Consensus 80 ~p~------~-~--~~-a~~v~~~l~~~~------~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~ 143 (446) T protein:vir:98 80 QHG------D-K--RI-KKFIDDQLRNRA------KTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPL 143 (446) T ss_pred cCc------c-H--HH-HHHHHHHHhhcC------chhHHHHHHHHHhhCceeeeEEEeecccccccchhhccccccccc Confidence 321 1 1 11 123555564322 234444577889999999988886432211 0 Q ss_pred --EEeecC---------------------------------------CeEEEeeeEEEEEcc-ccCCc-cccchHHHHHH Q lcl|Aclame:pro 122 --DLLFAD---------------------------------------DKKEYKPEELVRLTS-PFYIN-EDTSILDNALA 158 (378) Q Consensus 122 --~~~~~~---------------------------------------~~~~~~~~dvih~r~-~~~~~-~~~~~~~~~~~ 158 (378) .+.+++ ..+.+|.+..+|+++ +.+++ .|.+++..+.- T Consensus 144 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w 223 (446) T protein:vir:98 144 QVMLIANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLTSVLD 223 (446) T ss_pred cceeeeccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHHHHHH Confidence 111110 122355666666663 22222 35566665543 Q ss_pred HHH----------HHH-hcCCcceeeeeCCcCC------HHHHHHH---HHHHHHHHHHhhcccccccee---EecCCce Q lcl|Aclame:pro 159 SIQ----------TKL-EQGKLRGLLKINAFLD------IDNTQEY---REKALTTIKNMQEGSSYNGLT---PVDNKTE 215 (378) Q Consensus 159 ~i~----------~~~-~~~~~~gil~~~~~l~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~l~~g~~ 215 (378) ..- .+. .-|.|--+.+++...+ ++..... .+.+.+.+.+. +..++.++ .++.|++ T Consensus 224 ~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~--~~da~~ii~~~~~P~g~e 301 (446) T protein:vir:98 224 YSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRL--STDSGLVLTQLSKEQPVQ 301 (446) T ss_pred HHHHHHhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhc--cccceeeeecccCCCCce Confidence 221 111 2355555556544322 2211111 22333333221 12233333 2377888 Q ss_pred eeecccchhh-hhHHH-HHHHHHHHHHHhCCCHHHhc------ccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH Q lcl|Aclame:pro 216 IVELKKDYSV-LNKDE-IDLIKSELLTGYFMNENILL------GTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNR 286 (378) Q Consensus 216 ~~~l~~~~~~-~~~~~-~~~~~~~Ia~~fgVPp~~l~------~~~~-e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~ 286 (378) ++-++..... .+.+. .++..++|+.+.....-.++ |+++ .+....-....+...+++|++.+|+.|+.+-= T Consensus 302 ie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~V~~d~~~aDa~~i~~tln~~Li~~l~ 381 (446) T protein:vir:98 302 VGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLELFDGKINSIFDTVIHAFTEQVIGNLI 381 (446) T ss_pred EEeeccccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 7766442222 12444 47888999998766543332 2322 22234455667888999999999998865432 Q ss_pred Hhhhcccccee-----eEEecchhhhhcCHHHHHHHHHHHHhCCCCCH---HHHHHHhCCCCCCCCCe Q lcl|Aclame:pro 287 RRVVKGNLYYE-----RIIVDNQLFKFATLKELIDLYHENINGPIFTQ---NQLLVKMGEQPIEGGDV 346 (378) Q Consensus 287 ~~~g~~~~~~~-----~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~---NE~R~~~gl~p~~gGD~ 346 (378) .-.+....... .+.|+.. ...|.+..+++..++++.|+.++ +.+|+.+|+|+-. -|+ T Consensus 382 ~lNf~~~~~~~~~~~~~~~~~~~--e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~-~~~ 446 (446) T protein:vir:98 382 RLNFDPALYPLASNTGYITRLPG--RATDLAALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAI-SST 446 (446) T ss_pred HhCCCccccccccccccceeccC--ChhhHHHHHHHHHHHHhCCccccccHHHHHHHhCcCCCC-CCC Confidence 11111111111 1223322 45788999999999999998764 4599999997642 122 No 145 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=98.76 E-value=2e-08 Score=62.78 Aligned_cols=348 Identities=12% Similarity=0.084 Sum_probs=155.5 Q ss_pred CCccccccccccccccCC-ccceeecccc---hhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc------ccccce- Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNND-TQRVTAWQNE---AVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV------GSDTLI- 69 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~------~~~~~~- 69 (378) |.| + ...+..- +..-+.+-+. +.-...+-+++|+..||..+..- |.......... ...+.. T Consensus 92 ~~~-~------~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~ 163 (698) T protein:vir:10 92 LDF-N------GTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAA 163 (698) T ss_pred hcc-c------ccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cceeccccchhhhhhccccccccc Confidence 332 0 0000000 0000111111 11113456789999999888664 53321110000 000000 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCC----------------ceEEEEe--------e Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNT----------------GELLDLL--------F 125 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~----------------g~~~~~~--------~ 125 (378) ...+..--+.|..+=..+.-+..|.+.+ .+--++|-+.+++..++.. |.+..+. | T Consensus 164 ~~~d~dqi~~L~~e~erl~V~~~l~eai-~~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP 242 (698) T protein:vir:10 164 STSDGDQLKQINDEIERLRIRDAVRTTV-IHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTP 242 (698) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccceEEEEEeecCccccccccccccccccCccceeeeeeccccccc Confidence 0001111122221111122223333433 3344466665555433211 2222221 1 Q ss_pred cC-------------------CeEEEeeeEEEEEcc--------ccCCccccchHHHHHHHHHHHHhc----------CC Q lcl|Aclame:pro 126 AD-------------------DKKEYKPEELVRLTS--------PFYINEDTSILDNALASIQTKLEQ----------GK 168 (378) Q Consensus 126 ~~-------------------~~~~~~~~dvih~r~--------~~~~~~~~~~~~~~~~~i~~~~~~----------~~ 168 (378) .. .+..|..+.++.|.. +.+...|.|..+.+...+..+... .. T Consensus 243 ~~~n~~dP~spdfgkP~~y~V~G~~IH~SRL~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~ 322 (698) T protein:vir:10 243 NNYNSINPVADDFYKPSTWWMIGSEVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFS 322 (698) T ss_pred chhhhccchhhccCCCceEEEecceecceeEEEecCCCchhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHHHHHhh Confidence 00 011355666665542 122345788888877776554321 11 Q ss_pred cceee-eeCCcCCHHHHHHHHHHH--HHHHHHhhccccccceeEec-CCceeeecccchhhhhHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 169 LRGLL-KINAFLDIDNTQEYREKA--LTTIKNMQEGSSYNGLTPVD-NKTEIVELKKDYSVLNKDEIDLIKSELLTGYFM 244 (378) Q Consensus 169 ~~gil-~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgV 244 (378) .+++. ..-..+++....++..++ -++++ +| .++++++ ..-+|.+.+.+...++--.+++ ...||.+-+| T Consensus 323 ~~~l~~dla~aL~~g~~~~l~~R~eli~~~R-----sn-~G~~llDk~~Eefeq~st~lSGLddVi~qf-~q~VAgaa~I 395 (698) T protein:vir:10 323 VSGILMDLAQALTPGANVDLSMRAELINRYR-----DN-RNILFLDKATEEFFQFNTPLSGLDALQAQA-QEQMSAVSHI 395 (698) T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHhc-----Cc-cceEEEecCCcceEEEecCcCCHHHHHHHH-HHHHHhhhcC Confidence 12210 001112222222222222 22332 33 3577788 4789999987776665333333 4688988888 Q ss_pred CHHHhccc-------chHHHHHH-------HHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcC Q lcl|Aclame:pro 245 NENILLGT-------ASQEQQIY-------FYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) Q Consensus 245 Pp~~l~~~-------~~e~~~~~-------f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d 310 (378) |...|-|. +.|...+. .-+.-|.|.++.+-+-+-+..|.. .... +.|.+..|.+.| T Consensus 396 PltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~--------idp~--i~~~fnPL~qmt 465 (698) T protein:vir:10 396 PLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGA--------VDPS--IKWQWNALRELD 465 (698) T ss_pred chhhhhccCCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCc--ceEEeCCCCCcC Confidence 87766332 12222333 334568888888777776655432 1223 444456788777 Q ss_pred HHHHHHH-------HHHHHhCCCCCHHHHHHHhCCCCCCC-------CCeeeecc-cceecccchhccCccCCCCCCCCC Q lcl|Aclame:pro 311 LKELIDL-------YHENINGPIFTQNQLLVKMGEQPIEG-------GDVYIANL-NAVAVKNLSDLQGSRKDVTSTDET 375 (378) Q Consensus 311 ~~~~~~~-------~~~~~~~G~~t~NE~R~~~gl~p~~g-------GD~~~~~~-n~~~~~~~~~~~~~~~~~~~~~e~ 375 (378) .++++++ ...++..|+++++|+|+.+.=+|--+ -|.+..|. |.++.. ..+.+....+++.+ T Consensus 466 d~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~----~~~~~~~~~~~~~~ 541 (698) T protein:vir:10 466 DLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGV----LTYVQRMAEGGDTG 541 (698) T ss_pred HHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHH----HhhhcCCcCCCCcc Confidence 7777655 56677899999999999986655321 12222222 211111 01111222223333 Q ss_pred CCC Q lcl|Aclame:pro 376 NNQ 378 (378) Q Consensus 376 ~~e 378 (378) ..+ T Consensus 542 ~~~ 544 (698) T protein:vir:10 542 APT 544 (698) T ss_pred ccc Confidence 322 No 146 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=98.60 E-value=2.1e-07 Score=57.22 Aligned_cols=346 Identities=10% Similarity=-0.002 Sum_probs=162.3 Q ss_pred CCcccccccc-----------------------------ccccccCCccceeeccc-----chhhhhhHHHHHHHHHHHh Q lcl|Aclame:pro 1 MNLFGKVVSF-----------------------------SRGKLNNDTQRVTAWQN-----EAVEYTSAFVTNIHNKIAN 46 (378) Q Consensus 1 M~~f~~~~~~-----------------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~i~~ia~ 46 (378) |. .|..+. ..+........+.-+.. +.+ ..-+.|.+|++.+.. T Consensus 1 m~--kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m-~~D~hi~s~l~~Rk~ 77 (448) T protein:vir:77 1 MA--KRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKM-LSDGTVKNALNYIFG 77 (448) T ss_pred CC--CCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhccccchHHHHHH-hhChHHHHHHHHHHH Confidence 11 111000 00000000000100111 111 123568999999999 Q ss_pred hhccCceEEEEecccccccccceeccCchHHHHHhccCC---CCCCHHHHHHHHHHHHHhcCCcEEEEEEeC-CCceEE- Q lcl|Aclame:pro 47 EITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPK---GERNSMDFWRKVIKKLLSAPYVDLYAVFDD-NTGELL- 121 (378) Q Consensus 47 ~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN---~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~-~~g~~~- 121 (378) .|.+++|.|-... +...+.. .-.-+...|. .+. ...++.+++..+ .+.+.+|-+...++|+. ..|... T Consensus 78 av~~~~w~v~p~~--~~~~d~~---~ae~v~~~l~-~~~~~~~~~~f~~~i~~~-lda~~~G~s~~Eivw~~~~dg~~~~ 150 (448) T protein:vir:77 78 RIRSAKWYVEPAS--TDPEDIA---IAAFIHAQLG-IDDASVGKYPFGRLFAIY-ENAYIYGMAAGEIVLTLGADGKLIL 150 (448) T ss_pred HHhcCCceEecCC--CCHHHHH---HHHHHHHHhh-chhhhhccCCHHHHHHHH-HHhhhhcceeEEEEEeecCCCceee Confidence 9999999974311 1111110 1112233332 121 123566677665 57888999998888752 344421 Q ss_pred -EEe-------------ecC------------------CeEEEeeeEEEEEccccCCc-cccchHHHHHHHHH------- Q lcl|Aclame:pro 122 -DLL-------------FAD------------------DKKEYKPEELVRLTSPFYIN-EDTSILDNALASIQ------- 161 (378) Q Consensus 122 -~~~-------------~~~------------------~~~~~~~~dvih~r~~~~~~-~~~~~~~~~~~~i~------- 161 (378) .+. +++ ..+.+|...++|.....+++ .|.+++..+.-..- T Consensus 151 ~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~ 230 (448) T protein:vir:77 151 DKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLHNDDGSFTGQSALRAAVPHWLAKRALIL 230 (448) T ss_pred ccccccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEecCCcCCcccchHHHHHHHHHHHHHhhHH Confidence 110 111 12234566777776433332 25566655443221 Q ss_pred ---HHH-hcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHH Q lcl|Aclame:pro 162 ---TKL-EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKS 236 (378) Q Consensus 162 ---~~~-~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~ 236 (378) .+. .-|.|--+.+++...+++. +.++.+.+...+...+.+++ ++++.|++++-++......+. ..+++..+ T Consensus 231 ~w~~f~E~yG~P~~vgky~~ga~~~~--~~~~~l~~av~~i~~g~~a~--~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~ 306 (448) T protein:vir:77 231 LINHGLERFMIGVPTLTIPKSVRQGT--KQWEAAKEIVKNFVQKPRHG--IILPDDWKFDTVDLKSAMPDAIPYLTYHDA 306 (448) T ss_pred HHHHHHHHcCCceeEEecCCCCCCCH--HHHHHHHHHHHHHhcCCceE--EEecCCceEEEEecCCCccCHHHHHHHHHH Confidence 111 2355555666664433221 22334444444444455554 445566665544332222233 33467778 Q ss_pred HHHHHhCCCHHHh----cccch--HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcc-ccceeeEEecchhhhhc Q lcl|Aclame:pro 237 ELLTGYFMNENIL----LGTAS--QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG-NLYYERIIVDNQLFKFA 309 (378) Q Consensus 237 ~Ia~~fgVPp~~l----~~~~~--e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~-~~~~~~~~~d~~~l~~~ 309 (378) +|+.+..-. .+- +|+++ .+.........+.-.+++|++.||+.|+.+--. ..++ ...+-+|.|+.. ... T Consensus 307 ~Isk~iLGq-tlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~-lNfg~~~~~P~~~f~~~--e~e 382 (448) T protein:vir:77 307 GIARALGID-FNTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVL-PNWPGATRFPRLTFEME--ERN 382 (448) T ss_pred HHHHHHhcc-ccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCEEEecCC--Chh Confidence 888765332 121 12222 122234556667889999999999988765321 1121 222335666643 567 Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCC---CCCCCCCCCC Q lcl|Aclame:pro 310 TLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKD---VTSTDETNNQ 378 (378) Q Consensus 310 d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~---~~~~~e~~~e 378 (378) |.+..++.+.+++ +-+|+.+|+|.--++...-.|.. | +...+..+ ....+..+.+ T Consensus 383 Dl~~~a~~~~~l~-------~~~~~~~~ip~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~ 440 (448) T protein:vir:77 383 DFSAAANLMGMLI-------NAVKDSEDIPTELKALIDALPSK--M-----RRALGVVDEVREAVRQPADSR 440 (448) T ss_pred hHHHHHHHhHHHH-------HHHHHHhcCCccCCcCCCCCchh--c-----ccccCCCCCCCchhhcchhhH Confidence 8888999888876 56899999975322221111111 0 00111101 1111222222 No 147 >protein:vir:97376 Length: 320 # NCBI annotation: putative portal protein # Family: family:all:11744 # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762589;genbank:gi:115304290;genbank:GeneID:5130579 Probab=98.39 E-value=1.1e-08 Score=64.30 Aligned_cols=280 Identities=19% Similarity=0.271 Sum_probs=146.4 Q ss_pred CCcccccccccccc-c---------cCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK-L---------NNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) ||+|+-.+.-.-.+ . ..+.+.++... -+.+-+-.|.+||.- +..|+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~---------- 59 (320) T protein:vir:97 1 MGIFNFKKRETLTPELKESIIRQVTIEDESPFTGTT----------DFNVRNEVAESIATY-LGAYKTSA---------- 59 (320) T ss_pred CCccccccccccChhHHhhhhheeeeccCCCccccc----------ccchhhHHHHHHHHH-hhhhcccc---------- Confidence 99998543211000 0 01111121111 122233344444432 11232211 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE--------------EEeecC----CeEEE Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL--------------DLLFAD----DKKEY 132 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~--------------~~~~~~----~~~~~ 132 (378) ....||... -.|++.++.+.+..-..|+|.- ...|-++ ...|+. ++..+ T Consensus 60 ----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~FN~~V~mtv 126 (320) T protein:vir:97 60 ----KRLSLLTNN-------PSFLRRLVKHALHNKTTYVYKS--PTYGWLITDSMTIEGLRARLTFTLPDPFNSAVTMTV 126 (320) T ss_pred ----ceeeeeeCC-------HHHHHHHHHHhhcccceEEeeC--CccceeeecceeeeeeeeeEEEecCcccceeEEEEe Confidence 112233322 3689999999999888888752 2223322 122221 12233 Q ss_pred eeeEEEEEccccCCcccc--c-hHHHHHHHHHHHH-hcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhcccc-ccce Q lcl|Aclame:pro 133 KPEELVRLTSPFYINEDT--S-ILDNALASIQTKL-EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSS-YNGL 207 (378) Q Consensus 133 ~~~dvih~r~~~~~~~~~--~-~~~~~~~~i~~~~-~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 207 (378) +-.|+-.+-+|+.+-... + -...|...+...+ +.++++..++++-+. ..++.+++....++++..-.+ -.|+ T Consensus 127 pfyD~~ILdnpl~gv~tqe~gkM~g~a~~~v~kkL~~~~~IKafi~Tdid~---GLee~kD~~~~kIk~mq~~A~~~nG~ 203 (320) T protein:vir:97 127 PFYDVGIIDSPLVEVDTEEANKMLEAAYSAVMKKLHNTGAIKAFISSDIDV---GLEKMKEESDSKIKAMLATAELLSGY 203 (320) T ss_pred eeechhhhhhhhcccChHHhhHHHHHHhhhhhhhccccceeEEEEecccch---hHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 333444444444322211 0 1122333343333 457888887776442 234455555555554443333 3478 Q ss_pred eEecCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHhcccchHHHHHHHHHHHHHHHHHHH---HHHHHhhcCCh Q lcl|Aclame:pro 208 TPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILLGTASQEQQIYFYNSTIIPLLIQL---EKELTYKLIST 284 (378) Q Consensus 208 ~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~~e~~~~~f~~~~l~P~~~~i---e~~l~~~Ll~~ 284 (378) .+++.|-+++++..+...+...+....++..+.-++||..+|.|+.++.+..+|+-.++.|+++++ |-+|.++|-- T Consensus 204 T~i~~~dDI~Qi~pDYS~sn~~D~~l~~t~alS~y~m~~~IL~GsAte~~~Iaf~~~~V~PLL~Q~~~~Ek~Lvy~m~~- 282 (320) T protein:vir:97 204 TYIQRGDDVTQMMPDYTTSNVTDFAAMRTFAASQLSVSDKILDGSATDGEKVAVMFRFVEPILEQFREYEPSLIYAMRD- 282 (320) T ss_pred ccccCCcceeeecccccccchhHHHHHHHHHHhhcCCchhhccccCCcceeeehhhHhHHHHHHHhhhcCcceeeeecc- Confidence 899999999999988877766677777888899999999999999999999999999999999997 5566655510 Q ss_pred hHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCC----CCCCeeee Q lcl|Aclame:pro 285 NRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPI----EGGDVYIA 349 (378) Q Consensus 285 ~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~----~gGD~~~~ 349 (378) ..++.+ . ...|.+..|.+-. -|.+.- .|||+--+ T Consensus 283 ---------E~FVs~-------m--------------tTGG~l~S~~~~~-~~~~~~~~~~~~~~~~~~ 320 (320) T protein:vir:97 283 ---------EFFVSF-------M--------------TTGGMLNSNRVDG-WGKEKAPNESKGGDVGDV 320 (320) T ss_pred ---------ceeeee-------e--------------ecCceeecccccc-cccccCCccccCCcccCC Confidence 111111 1 0134444443221 111111 13332111 No 148 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=98.17 E-value=3.2e-06 Score=50.70 Aligned_cols=266 Identities=11% Similarity=0.024 Sum_probs=127.1 Q ss_pred EEEEEEeCCC------------------------ceEEEEe--ec-C-CeEEEeeeEEEEEcc-ccCCc-cccchHHHHH Q lcl|Aclame:pro 108 DLYAVFDDNT------------------------GELLDLL--FA-D-DKKEYKPEELVRLTS-PFYIN-EDTSILDNAL 157 (378) Q Consensus 108 ~~~~~~~~~~------------------------g~~~~~~--~~-~-~~~~~~~~dvih~r~-~~~~~-~~~~~~~~~~ 157 (378) +..++|+... +.+..+. +. + ..+.+++...|+.++ +.+++ .|.+++..+. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~~~ 80 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCCCccchhhHHHHH Confidence 2222222221 2222221 11 1 235666766665553 22222 2556666554 Q ss_pred HHHH----------HHH---hcCCcceeeeeCCcCC-HH------HHHHHHHHHHHHHHHhhccccccceeEecCCceee Q lcl|Aclame:pro 158 ASIQ----------TKL---EQGKLRGLLKINAFLD-ID------NTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIV 217 (378) Q Consensus 158 ~~i~----------~~~---~~~~~~gil~~~~~l~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~ 217 (378) -..- .+. ..+.|-++........ ++ ..+..++...........+..++ ++++.|++++ T Consensus 81 w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~--~iip~g~~ie 158 (355) T protein:vir:78 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAG--GYIPHGANFT 158 (355) T ss_pred HHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCccee--EeecCCceEE Confidence 3221 111 2244555544432221 11 12333445555554444444444 5566666665 Q ss_pred ecccchhhhhHH-HHHHHHHHHHHHhCCCHHHhc-----ccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhh Q lcl|Aclame:pro 218 ELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL-----GTAS-QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVV 290 (378) Q Consensus 218 ~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~-----~~~~-e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g 290 (378) -++......+.. .+++..++|+.++.-.---.. |+++ .+....-....+.-.++.|++.||+.|+.+--.... T Consensus 159 ~~ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~~gGS~Alg~vh~~v~~~~~~aD~~~i~~~ln~~li~~l~~lN~ 238 (355) T protein:vir:78 159 LTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNW 238 (355) T ss_pred EeecCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 554333333333 347777888887644321111 2222 233455567778889999999999988765322111 Q ss_pred ccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHH-----HHHHHhCCCCCCCCCeeeecccc-eecccchhccC Q lcl|Aclame:pro 291 KGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQN-----QLLVKMGEQPIEGGDVYIANLNA-VAVKNLSDLQG 364 (378) Q Consensus 291 ~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~N-----E~R~~~gl~p~~gGD~~~~~~n~-~~~~~~~~~~~ 364 (378) .....+-+|.|+. .. .+.+++++...+++..|+..++ .+|+.+|+|+-+.++....+... .+......... T Consensus 239 ~~~~~~P~~~~~~--~~-~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~ 315 (355) T protein:vir:78 239 GPEEPAPRLVPAQ--LG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLP 315 (355) T ss_pred CCCCCCCEEEecC--cC-hhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCcccCCccccccccccccccC Confidence 1222334566653 23 3556789999999999997654 47999999866556554433221 11111111111 Q ss_pred cc-----CC-CCCCCCCCCC Q lcl|Aclame:pro 365 SR-----KD-VTSTDETNNQ 378 (378) Q Consensus 365 ~~-----~~-~~~~~e~~~e 378 (378) +. .. ..+...+..+ T Consensus 316 ~~~~~~~~~a~~~~a~~~~~ 335 (355) T protein:vir:78 316 GQRQGAALPSRSPRADPPRR 335 (355) T ss_pred CccccccccccCCCCCChhh Confidence 10 00 0011112222 No 149 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=97.98 E-value=1.4e-06 Score=52.70 Aligned_cols=177 Identities=14% Similarity=0.098 Sum_probs=86.6 Q ss_pred eeeeCCc---CCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHH Q lcl|Aclame:pro 172 LLKINAF---LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENI 248 (378) Q Consensus 172 il~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~ 248 (378) |+++++. ++.. ..+.++++.. +... . ++.+++.+...+-+|..++.+...++- .+......||.+-|||... T Consensus 1 V~k~~~l~~~~~~~-~~~~~~r~~~-~~~~-~-~~~~~~~ld~~~e~~e~~~~~lsGl~d-~l~~~~~~iaa~s~iP~t~ 75 (201) T protein:vir:10 1 MWKAKGLADLCDDS-DGAARLRLAQ-VDNN-S-GVGQAIGIDADSEEYNVLNSDIGGIDT-FLSQKFDRIVALSGIHEII 75 (201) T ss_pred CccchHHHHHhcCC-hHHHHHHHHH-HHHh-h-hhhhhheeecCCcceeeeecCcCChHH-HHHHHHHHHHhHhcCchhh Confidence 4444331 1111 1123333321 1111 1 122334455555778888776665542 2344567999999999887 Q ss_pred hccc-------chHHHHHHHHH-------HHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHH Q lcl|Aclame:pro 249 LLGT-------ASQEQQIYFYN-------STIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKEL 314 (378) Q Consensus 249 l~~~-------~~e~~~~~f~~-------~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~ 314 (378) |-|. +.+...+.||. .-|.|.++.+-+-+ .- . -+|.|.+.+|...+.+++ T Consensus 76 LfG~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~~----~~----------~--~~~~~~f~pL~~~s~kek 139 (201) T protein:vir:10 76 LKGKNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPFI----VT----------E--QEWSVEFNPLSQVSDKDK 139 (201) T ss_pred hcCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC----------C--CCceEeeCCCCCCCHHHH Confidence 7432 12223334443 44566555443321 11 1 123444467888877766 Q ss_pred H-------HHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 315 I-------DLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 315 ~-------~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) + +++.+++.+|+++++|+|+.|--.+..++ ++-+-++.+. ......+ +.+...|+ T Consensus 140 Aei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~----~~~~~~~~~~----~~~e~~d-p~~~~~~~ 201 (201) T protein:vir:10 140 SEILEKNVNSVAALIAAGIIDADEARDTLRAISTEVK----IGEGSIQTEV----VINESED-PLDVSANN 201 (201) T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCcCC----CCCCCCCccc----cccccCC-CCCCCCCC Confidence 4 56778899999999999998755544331 1212111111 1111111 22222222 No 150 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=96.79 E-value=0.00034 Score=39.61 Aligned_cols=343 Identities=11% Similarity=-0.009 Sum_probs=129.4 Q ss_pred CCcc-------ccccccccccccCCccceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceecc Q lcl|Aclame:pro 1 MNLF-------GKVVSFSRGKLNNDTQRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMA 72 (378) Q Consensus 1 M~~f-------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~ 72 (378) .+++ .++..+-.|.-.-...+...-.. ........+..-+|+..++.+--..|. .... ... T Consensus 21 ~~~~~~~~~rl~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~---~~~~--------~~~ 89 (484) T protein:vir:77 21 LNLFTERTQDLGDNTAYYESERRPDAVGVTVPQQMQKLLAHVGYPRLYIDAIAARQELEGFR---LGGA--------DKA 89 (484) T ss_pred HHHHHHHHHHHHHHHHHHhccccchhcccccchhHHhhhhhcCcHHHHHHHHHhhhccCcee---cCCc--------chh Confidence 1111 11111111110000000000000 000111233445566666544322332 1110 112 Q ss_pred CchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCce----------EEEEee----------------- Q lcl|Aclame:pro 73 GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGE----------LLDLLF----------------- 125 (378) Q Consensus 73 ~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~----------~~~~~~----------------- 125 (378) +..+.++++. |. .......+..+.+.+|.||+.+. .+..|. +..+-| T Consensus 90 ~~~l~~i~~~--N~---~d~~~~~~~~~a~~~G~a~~~v~-~~~~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~a 163 (484) T protein:vir:77 90 DEQLWDWWQA--ND---LDIESTLGHTDSLVHGRSYITIS-KPDPNIDPGVDPEVPIIRVEPPTNLYAQIDPRTRQVMRA 163 (484) T ss_pred HHHHHHHHHh--cC---HhHHHHHHHHHHhhcCceEEEEe-cCCCCcccccccccceEEEeccceeEEEecCCCCceEEE Confidence 3446666542 32 23456778899999999997653 343332 111101 Q ss_pred -------cCCeE----EEeeeE-------------------------EEEEccccCC--ccccchH----HHHHHHHHH- Q lcl|Aclame:pro 126 -------ADDKK----EYKPEE-------------------------LVRLTSPFYI--NEDTSIL----DNALASIQT- 162 (378) Q Consensus 126 -------~~~~~----~~~~~d-------------------------vih~r~~~~~--~~~~~~~----~~~~~~i~~- 162 (378) .++.+ .|.++. |+||.|.... ..|.|-+ ..+.+++.. T Consensus 164 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~~~~~~~~G~s~i~~~v~~L~Da~~~~ 243 (484) T protein:vir:77 164 IRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNRTRLSDLYGTTEITPELRSVTDAAART 243 (484) T ss_pred EEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEeccccccCccCCcccchHHHHHHHHHHHHH Confidence 00100 122222 3444431111 1233322 222233221 Q ss_pred ---HHh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEec-CCceeeecccchhhhhHHHHHHH Q lcl|Aclame:pro 163 ---KLE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVD-NKTEIVELKKDYSVLNKDEIDLI 234 (378) Q Consensus 163 ---~~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~~~~~~~~~~~~~~~ 234 (378) ..+ .+.|.-++. ....++. ....+.-...++. ..+.++.++ .+.++.++....-+.-.+.++.. T Consensus 244 ~s~~~~~~~~~a~p~~~i~-G~~~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~q~~~~~~e~~~~~l~~~ 315 (484) T protein:vir:77 244 LMLMQATAELMGVPQRLLF-GVKGEEL--GVDPETGQTLFDA-----YLARILAFEDHESKAQQFSAAELRNFVDALDAL 315 (484) T ss_pred HHHHHHHHHhhhhhHHHHh-CCCcchh--cccccccchhhhh-----hhhhhcccCCCCceeEeecCCChHHHHHHHHHH Confidence 111 122221221 1111111 0000111111111 112355554 46777777644322223445666 Q ss_pred HHHHHHHhCCCHHHhcccc----hHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccce Q lcl|Aclame:pro 235 KSELLTGYFMNENILLGTA----SQEQQI--------------YFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYY 296 (378) Q Consensus 235 ~~~Ia~~fgVPp~~l~~~~----~e~~~~--------------~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~ 296 (378) ..+|+.+-++|++.+++.. +....+ ..+...|.-.++.+....+..- ....... T Consensus 316 i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~l~~~~~~~~~--------~~~~~~~ 387 (484) T protein:vir:77 316 DRKAAAYTGLPPYYLSFSSENPASAEAIRSSESRLVKTVERKNKIFGGAWEQAMRVAYKVMNGGD--------IPPEYYR 387 (484) T ss_pred HHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------ccccccc Confidence 6778888899999997642 221111 1122222222222211111100 0011122 Q ss_pred eeEEecchhhhhcCHHHHHHHHHHHHhCC--CCCHHHHHHHhCCCCCC--CCCeee------ecccceecccchhccCcc Q lcl|Aclame:pro 297 ERIIVDNQLFKFATLKELIDLYHENINGP--IFTQNQLLVKMGEQPIE--GGDVYI------ANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 297 ~~~~~d~~~l~~~d~~~~~~~~~~~~~~G--~~t~NE~R~~~gl~p~~--gGD~~~------~~~n~~~~~~~~~~~~~~ 366 (378) +++.| ......+..+.++.+.+++++| +++..-+++++|+.+-+ ...... ....+-++.....++++. T Consensus 388 i~v~w--~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~~~~~~~~~~~~~~~~~ 465 (484) T protein:vir:77 388 MESIW--RDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQAQGLGLMGTMFGTDPSGGGN 465 (484) T ss_pred ceEEe--cCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccCCCC Confidence 33444 4456678889999999999876 88988888999885532 111110 000111111111111111 Q ss_pred CCCC--CCCCCCCC Q lcl|Aclame:pro 367 KDVT--STDETNNQ 378 (378) Q Consensus 367 ~~~~--~~~e~~~e 378 (378) .+.. .+.+.+-+ T Consensus 466 ~~~~~~~~~~~~~~ 479 (484) T protein:vir:77 466 PDNPETPEPQPNPA 479 (484) T ss_pred CCCCCcccccCCCc Confidence 1111 11111111 No 151 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=95.47 E-value=0.002 Score=35.38 Aligned_cols=339 Identities=11% Similarity=0.079 Sum_probs=132.7 Q ss_pred CCcccccccc---ccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHH Q lcl|Aclame:pro 1 MNLFGKVVSF---SRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLD 77 (378) Q Consensus 1 M~~f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (378) ...+.-...+ .+.........+............++...+|+..++-+-.-|+.+ . ..+ ......+. T Consensus 50 ~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~yl~g~~~~~-~--~~d-------~~~~~~l~ 119 (503) T protein:vir:59 50 VRYYMCENDIEKKRRTYYDAAGQQLVDDTKTNNRTSHAWHKLFVDQKTQYLVGEPVTF-T--SDN-------KTLLEYVN 119 (503) T ss_pred HHHhccccchhhccchhcccccccccccccccceeecchHHHHHHHHHhhhhcCCeee-c--cCc-------HHHHHHHH Confidence 0001000000 000000000000000000011224456778888888887778764 1 111 01122233 Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e--------cC-------------------C Q lcl|Aclame:pro 78 EVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F--------AD-------------------D 128 (378) Q Consensus 78 ~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~--------~~-------------------~ 128 (378) .++. | ........+..+.+.+|.+|+++. .+..|++.-.+ | +. . T Consensus 120 ~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~-~d~dg~~~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~ 192 (503) T protein:vir:59 120 ELAD---D---DFDDILNETVKNMSNKGIEYWHPF-VDEEGEFDYVIFPAEEMIVVYKDNTRRDILFALRYYSYKGIMGE 192 (503) T ss_pred HHHh---c---CHHHHHHHHHHHHhhCCeEEEEEe-ecCCCceEEEEEccceeEEEEeCCCCCceEEEEEEEEEecCCCc Confidence 3332 3 344556668889999999998764 44555542111 1 00 0 Q ss_pred eE----EEeeeEEEEEccc---------------------------c---------CCccccchH---HHHHHHHHHHH- Q lcl|Aclame:pro 129 KK----EYKPEELVRLTSP---------------------------F---------YINEDTSIL---DNALASIQTKL- 164 (378) Q Consensus 129 ~~----~~~~~dvih~r~~---------------------------~---------~~~~~~~~~---~~~~~~i~~~~- 164 (378) .+ .|.++.|.+++.. + ....+.|.+ ..+.++++..+ T Consensus 193 ~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn~~~~sd~~~~~~liDa~d~~~s 272 (503) T protein:vir:59 193 ETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPIIPFKNNEEMVSDLKFYKDLIDNYDSITS 272 (503) T ss_pred eEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCCccceEEecCCCCCCcchhhhHHHHHHHHHHHH Confidence 00 1222233322200 0 011133322 23333333221 Q ss_pred -------hcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHHHHHHH Q lcl|Aclame:pro 165 -------EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKS 236 (378) Q Consensus 165 -------~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~ 236 (378) ..+.+-.++. .....+ ..+ +...+. ..+++.++++.+.+.+..+...-. ...++.+.+ T Consensus 273 ~~~~~~~~~~~~~~v~~-g~~~~~--~~~----~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 338 (503) T protein:vir:59 273 STMDSFSDFQQIVYVLK-NYDGEN--PKE----FTANLR-------YHSVIKVSGDGGVDTLRAEIPVDSAAKELERIQD 338 (503) T ss_pred HHHHHHHHhcCCeeEee-cCCccc--cch----hhhhhh-------cccceeccCCCcceeEeccCCHHHHHHHHHHHHH Confidence 1223323332 111111 111 111111 123455555444444433222222 233456666 Q ss_pred HHHHHhCCC---HHHhcccchHH--------------HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeE Q lcl|Aclame:pro 237 ELLTGYFMN---ENILLGTASQE--------------QQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERI 299 (378) Q Consensus 237 ~Ia~~fgVP---p~~l~~~~~e~--------------~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~ 299 (378) .|+..-++| +..++|+.+.. .....+...|.-+++.|...++..--.. ......+.+ T Consensus 339 ~i~~~s~~p~~~~~~~~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~------~~~~~~i~i 412 (503) T protein:vir:59 339 ELYKSAQAVDNSPETIGGGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTGKGD------FNPDKELTM 412 (503) T ss_pred HHHHHhcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc------cccccceeE Confidence 666555555 34444433321 1223455556666666655554321110 011122445 Q ss_pred EecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecc-ccee-cccchhccCccCCCC----- Q lcl|Aclame:pro 300 IVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANL-NAVA-VKNLSDLQGSRKDVT----- 370 (378) Q Consensus 300 ~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~-n~~~-~~~~~~~~~~~~~~~----- 370 (378) .| ..-...|..+.++++.+++.+|+++...+.+++++-+-|. -+.+-.-. .... .....+..++..+.+ T Consensus 413 ~f--~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (503) T protein:vir:59 413 TF--TRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPFVQDPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPN 490 (503) T ss_pred Ee--CCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCCCC Confidence 45 4557789999999999999999999999988876532111 00100000 0000 000001111111111 Q ss_pred -CCCCCCCC Q lcl|Aclame:pro 371 -STDETNNQ 378 (378) Q Consensus 371 -~~~e~~~e 378 (378) +.++.++. T Consensus 491 ~~~~~~~~~ 499 (503) T protein:vir:59 491 AGAAESGGA 499 (503) T ss_pred CCcccCCCC Confidence 11111111 No 152 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=95.43 E-value=0.0021 Score=35.29 Aligned_cols=352 Identities=10% Similarity=-0.007 Sum_probs=135.1 Q ss_pred CCcccccccc----------ccccccCCc----cceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccc Q lcl|Aclame:pro 1 MNLFGKVVSF----------SRGKLNNDT----QRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGS 65 (378) Q Consensus 1 M~~f~~~~~~----------~~~~~~~~~----~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~ 65 (378) ..+.+++... ...++.+.- ........ ........+...+|+.+++.+---.|.+-......... T Consensus 10 ~~~i~~L~~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~a~~l~~~Gf~~~~~~~~~~~~ 89 (488) T protein:vir:23 10 EKLRDQLLDAFENKQNELKSSKAYYDAERRPDAIGLAVPLDMRKYLAHVGYPRTYVDAIAERQELEGFRIPSANGEEPES 89 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcCcccchhhhhhhhhcchHHHHHHHHHHhhhccceeccCCccccccc Confidence 1111100000 000111100 00000000 00111223445566666654432233221100000000 Q ss_pred ccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE----------------------------eCCC Q lcl|Aclame:pro 66 DTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVF----------------------------DDNT 117 (378) Q Consensus 66 ~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~----------------------------~~~~ 117 (378) .........+.+++. -| ........+..+++.+|.||+++.. ++.. T Consensus 90 -~~d~~~~~~l~~i~~--~N---~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~d~~~ 163 (488) T protein:vir:23 90 -GGENDPASELWDWWQ--AN---NLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEVPLIRVEPPTALYAEVDPRT 163 (488) T ss_pred -ccchhHHHHHHHHHH--hc---ChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCcceEEEeccceeEEEEecCC Confidence 000111234555553 23 2345666788899999999976421 1111 Q ss_pred ceEEE---Eee--cCCeE----EEeeeE-------------------------EEEEccccC--CccccchH----HHHH Q lcl|Aclame:pro 118 GELLD---LLF--ADDKK----EYKPEE-------------------------LVRLTSPFY--INEDTSIL----DNAL 157 (378) Q Consensus 118 g~~~~---~~~--~~~~~----~~~~~d-------------------------vih~r~~~~--~~~~~~~~----~~~~ 157 (378) +++.. ++. .++.+ .|.++. |+||+|... ...|.|-+ ..+. T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~l~ 243 (488) T protein:vir:23 164 RKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISNRTRLSDLYGTSEISPELRSVT 243 (488) T ss_pred CceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEeccccccCCcCCccchhhhHHHHH Confidence 11111 000 11111 122222 344433111 11233322 2222 Q ss_pred HHHHH----HHh----cCCcceeeeeCCcCCHHHH--HHHHHHHHHHHHHhhccccccceeEecCC--ceeeecccchhh Q lcl|Aclame:pro 158 ASIQT----KLE----QGKLRGLLKINAFLDIDNT--QEYREKALTTIKNMQEGSSYNGLTPVDNK--TEIVELKKDYSV 225 (378) Q Consensus 158 ~~i~~----~~~----~~~~~gil~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~g--~~~~~l~~~~~~ 225 (378) ++++. ..+ .+.+.-++. ...+++... ......|+. ..++++.+++| .++.++...... T Consensus 244 Da~~~~~s~~~~~~~~~a~p~~~i~-G~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~g~~~~~~q~~~~~~~ 313 (488) T protein:vir:23 244 DAAAQILMNMQGTANLMAIPQRLIF-GAKPEELGINAETGQRMFDA---------YMARILAFEGGEGAHAEQFSAAELR 313 (488) T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHh-CCCcccccccccccchhhhh---------hhhhhccCCCCCCceeEecCCCChH Confidence 33222 111 112211111 111111100 000111211 12345666655 566666543322 Q ss_pred hhHHHHHHHHHHHHHHhCCCHHHhcccc----hHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHH Q lcl|Aclame:pro 226 LNKDEIDLIKSELLTGYFMNENILLGTA----SQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRR 287 (378) Q Consensus 226 ~~~~~~~~~~~~Ia~~fgVPp~~l~~~~----~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~ 287 (378) ...+.++....+|+..-++|++.++++. +... ....+...|.-+++.+...++..-. T Consensus 314 ~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~----- 388 (488) T protein:vir:23 314 NFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYKMVKGGDI----- 388 (488) T ss_pred HHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----- Confidence 2234566677888888999999887542 2211 1123333444444444322221100 Q ss_pred hhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCC--CCCHHHHHHHhCCCCCC--CCCeeeec------ccceecc Q lcl|Aclame:pro 288 RVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGP--IFTQNQLLVKMGEQPIE--GGDVYIAN------LNAVAVK 357 (378) Q Consensus 288 ~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G--~~t~NE~R~~~gl~p~~--gGD~~~~~------~n~~~~~ 357 (378) ......+++.| ......+..+.++++.+++++| +++..-+++++|+-+-+ ..+...-. ..+-.+. T Consensus 389 ---~~~~~~i~v~f--~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 463 (488) T protein:vir:23 389 ---PTEYYRMETVW--RDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQMRQWLEQDQKQGLGLIGSLY 463 (488) T ss_pred ---chhhccceEEe--cCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHh Confidence 01112344444 3445668888999999999876 78998889999875432 11110000 0000110 Q ss_pred cchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 358 NLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 358 ~~~~~~~~~~~~~~~~e~~~e 378 (378) .....++...+...+++.++| T Consensus 464 ~~~~~~~~~~~~~~~~~~~~e 484 (488) T protein:vir:23 464 GASTPEGKPGEAPVGEPPAPE 484 (488) T ss_pred ccCCCcccCCCCCCCCCCCCC Confidence 111112222333445555555 No 153 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=95.38 E-value=0.0022 Score=35.18 Aligned_cols=342 Identities=11% Similarity=-0.000 Sum_probs=127.6 Q ss_pred CCc-------------c-------ccccccccccccCCc----cceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEE Q lcl|Aclame:pro 1 MNL-------------F-------GKVVSFSRGKLNNDT----QRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNH 55 (378) Q Consensus 1 M~~-------------f-------~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 55 (378) +|+ . .++... ..++.+.- .+...-.. ........+..-+|+..++.+--.+|.+ T Consensus 6 ~~~~~~~~~~~~~~~L~~~~~~~~~r~~~~-~~YY~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~ 84 (485) T protein:vir:24 6 PGQEEIADPAIARDEMVSAFEDQNQNLRSN-TSYYEAERRPEAIGVTVPVQMQSLLAHVGYPRLYVDSIAERQAVEGFRL 84 (485) T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHH-HHHHhccCchhhcCcccchhhhhhhhccchHHHHHHHHhhhhccCceec Confidence 000 0 000000 00111100 00000000 0000111233445555555443333321 Q ss_pred EEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCC------------------ Q lcl|Aclame:pro 56 VKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNT------------------ 117 (378) Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~------------------ 117 (378) ... ...+..+.++++. | ....+...+..+++.+|.||+++. .+.. T Consensus 85 ---~~~--------~~~~~~l~~i~~~--N---~~d~~~~~~~~~a~i~G~ay~~v~-~~~~~~~~~~~~~~~~i~~~~p 147 (485) T protein:vir:24 85 ---GDA--------DEADEELWQWWQA--N---NLDIEAPLGYTDAYVHGRSYITIS-RPDPQIDLGWDPNVPLIRVEPP 147 (485) T ss_pred ---CCC--------chhHHHHHHHHHh--c---ChhHHHHHHHHHHhhcCceEEEEe-cCCcccccccCCCcceEEEecc Confidence 110 1123446666653 3 234567888899999999998753 2221 Q ss_pred -----------ceEEEEe---e--cCCeE----EEeeeE-------------------------EEEEcccc--CCcccc Q lcl|Aclame:pro 118 -----------GELLDLL---F--ADDKK----EYKPEE-------------------------LVRLTSPF--YINEDT 150 (378) Q Consensus 118 -----------g~~~~~~---~--~~~~~----~~~~~d-------------------------vih~r~~~--~~~~~~ 150 (378) +++...+ . .++.+ .|..+. |+||+|.. ....|. T Consensus 148 ~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~ 227 (485) T protein:vir:24 148 TRMYAEIDPRIGRPAKAIRVAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGT 227 (485) T ss_pred ceeEEEeeCCcCceeEEEEEEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCcccCCcCCc Confidence 1111100 0 01100 122222 23443211 111233 Q ss_pred ch----HHHHHHHHHHH----Hh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEec-CCceee Q lcl|Aclame:pro 151 SI----LDNALASIQTK----LE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVD-NKTEIV 217 (378) Q Consensus 151 ~~----~~~~~~~i~~~----~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~ 217 (378) |- +..+.+++... .+ .+.|.-++. ...+ +......+.-...++ ...+.++.++ ++.++. T Consensus 228 s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~-G~~~--~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~ 299 (485) T protein:vir:24 228 SEITPELRSMTDAAARILMLMQATAELMGVPQRLIF-GIKP--EEIGVDPETGQTLFD-----AYLARILAFEDAEGKIQ 299 (485) T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhc-cCCc--cccccccccccchhh-----hcccceeccCCCCceEE Confidence 22 22222332221 11 122222221 1111 111000011111111 1123455554 567777 Q ss_pred ecccchhhhhHHHHHHHHHHHHHHhCCCHHHhcccc----hHHHH--------------HHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 218 ELKKDYSVLNKDEIDLIKSELLTGYFMNENILLGTA----SQEQQ--------------IYFYNSTIIPLLIQLEKELTY 279 (378) Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~----~e~~~--------------~~f~~~~l~P~~~~ie~~l~~ 279 (378) ++....-..-.+.++....+++..=++|+..++++. +.... +..+...|.-+++.+....+. T Consensus 300 q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~ 379 (485) T protein:vir:24 300 QFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKG 379 (485) T ss_pred eecccchHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 775433222234455556667777789999987642 22111 123333444444433222111 Q ss_pred hcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCC--CCCHHHHHHHhCCCCCC--CCCeee---eccc Q lcl|Aclame:pro 280 KLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGP--IFTQNQLLVKMGEQPIE--GGDVYI---ANLN 352 (378) Q Consensus 280 ~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G--~~t~NE~R~~~gl~p~~--gGD~~~---~~~n 352 (378) .-. ......+++.| ......+..+.++.+.+++.+| +++..-+++.+|+.+-+ ...... ...+ T Consensus 380 ~~~--------~~d~~~i~v~f--~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e~~~~~ee~~~~~ 449 (485) T protein:vir:24 380 GDV--------PPDMLRMETVW--RDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREEMRRWDEEEAAMG 449 (485) T ss_pred CCC--------ccccceeeEEe--cCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHHHHHHHHHHhhhh Confidence 100 01122344444 3445678888999999998865 78888888888886532 111100 0000 Q ss_pred ceecccchhccCccCC-CCCCCCCCCC Q lcl|Aclame:pro 353 AVAVKNLSDLQGSRKD-VTSTDETNNQ 378 (378) Q Consensus 353 ~~~~~~~~~~~~~~~~-~~~~~e~~~e 378 (378) ....+..........+ ...+++.+.+ T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~e~~~~~ 476 (485) T protein:vir:24 450 LGLLGTMVDADPTVPGSPNPTPAPKPQ 476 (485) T ss_pred hhHHHhhcccCCCCCCCCCCCCCCCCc Confidence 0011111111111111 1111111111 No 154 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=95.30 E-value=0.0023 Score=35.02 Aligned_cols=336 Identities=9% Similarity=-0.033 Sum_probs=135.0 Q ss_pred CCccccccccccccccCCccceeeccc-chhh--hhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQN-EAVE--YTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLD 77 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (378) ..=+.+...+-.|.-.-.......-.. .... ....+...+|+..++.+-.-|+.+- .. .+. ..+..+. T Consensus 21 ~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~-~~-----~d~---~~~~~~~ 91 (456) T protein:vir:79 21 MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG-GS-----ADS---DLALRAR 91 (456) T ss_pred HHHHHHHHHHHhccCChhhcCcccChhhchhhhhhhcchHHHHHHHHHhhhccCCeecC-CC-----CCc---cHHHHHH Confidence 110111111111110000000000000 0000 1123566778888887777777531 11 111 1123466 Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE--eecC-------------------------CeE Q lcl|Aclame:pro 78 EVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL--LFAD-------------------------DKK 130 (378) Q Consensus 78 ~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~--~~~~-------------------------~~~ 130 (378) +++.. |. ...+...+..+++.+|.||+++ +.+..|.+... -|.. ... T Consensus 92 ~~~~~--n~---~d~~~~~~~~~a~~~G~a~~~~-~~~edg~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~d~~~~ 165 (456) T protein:vir:79 92 RIWRD--NR---MDSVCKQWVKYGLDFGESYLTC-WRRDDGTATITADSPETMVVSVDPLQPWRIRSAMRWWRDLDAESD 165 (456) T ss_pred HHHHh--cC---hhHHHHHHHHHHhhcCeeEEEE-eeCCCCceEEEEeccceeEEEEcCCCCCceEEEEEEEEecCCcee Confidence 66653 42 2345667889999999999875 45555544211 1100 000 Q ss_pred ---EEeeeEEEEEc----------------------------c--------ccCCccccchHH-------HHHHHHHHHH Q lcl|Aclame:pro 131 ---EYKPEELVRLT----------------------------S--------PFYINEDTSILD-------NALASIQTKL 164 (378) Q Consensus 131 ---~~~~~dvih~r----------------------------~--------~~~~~~~~~~~~-------~~~~~i~~~~ 164 (378) .|..+.+.+.. + ++....+.|-++ .+-.++.... T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v~~liD~~~~~~s~~~ 245 (456) T protein:vir:79 166 FAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLL 245 (456) T ss_pred EEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhhHHHHHHHHHHHHHHH Confidence 00000110000 0 000011223222 2222221111 Q ss_pred hc----CCcceeee-eC--CcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhHHHHHHHHHH Q lcl|Aclame:pro 165 EQ----GKLRGLLK-IN--AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIKSE 237 (378) Q Consensus 165 ~~----~~~~gil~-~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~~~~ 237 (378) +. +.+.-++. .. ....++....+ ...+.++. ..++++.++.+.++.++....-.--.+.++.+..+ T Consensus 246 ~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i--~~~~~~~~-----~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~ 318 (456) T protein:vir:79 246 STMAIQAFRQRALKSSEHRLPKVDENGNAI--DYASIFEA-----APGALWELPPGVDIWESQTNDFTPMLSAIKEHIRQ 318 (456) T ss_pred HHHHHHhhHHHHHhcCCccccccccccccc--chhhhhhh-----hccccccCCCCcceeeecccChHHHHHHHHHHHHH Confidence 11 11111110 00 00001111000 00111111 12356777888888877643322223456777889 Q ss_pred HHHHhCCCHHHhccc---chHHHH--------------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEE Q lcl|Aclame:pro 238 LLTGYFMNENILLGT---ASQEQQ--------------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERII 300 (378) Q Consensus 238 Ia~~fgVPp~~l~~~---~~e~~~--------------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~ 300 (378) |+..-++|++.+++. .+.... ...+...|.-.++.+.. ..|......+++. T Consensus 319 i~~~t~~p~~~~~~~~~N~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~------------~~g~~~~~~i~v~ 386 (456) T protein:vir:79 319 LSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQ------------IEGESVEDTVDVS 386 (456) T ss_pred HHhhcCCChhHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCCCccccceEE Confidence 999999999998753 222111 11222333333332211 1122222334444 Q ss_pred ecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 301 VDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 301 ~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) | ......+..+.++++.+++..|+++..-+++.+|+.+-+ .- ...+...........+ .-.+.++++--+ T Consensus 387 w--~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~~lg~~~~~---i~--~~e~~r~~~e~~~~~~-~~~~~~~~~~~~ 456 (456) T protein:vir:79 387 F--ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ---IK--QDDLDRAREQITLFAG-NPVQRPQEDGSR 456 (456) T ss_pred e--CCCCCcCHHHHHHHHHHHHhcCCChHHHHHhcCCCCHHH---HH--HHHHHHHHHHHHHHhh-hHhhcCCCCCCC Confidence 4 345667889999999999999999998888888887631 00 0000000000000000 000001110001 No 155 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=95.16 E-value=0.0026 Score=34.73 Aligned_cols=363 Identities=12% Similarity=0.082 Sum_probs=118.0 Q ss_pred CCccccccccccccc--------cCCcc--ceeeccc--chh-----hhh--hHHHH----------------HHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL--------NNDTQ--RVTAWQN--EAV-----EYT--SAFVT----------------NIHNKIA 45 (378) Q Consensus 1 M~~f~~~~~~~~~~~--------~~~~~--~~~~~~~--~~~-----~~~--~~~v~----------------~~i~~ia 45 (378) ||+|.+++.+.+... ..... .+..... +.+ .|. .+++. .--..|| T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~~i~ 80 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHHHHH Confidence 999999887654211 00000 1110000 000 000 00000 0112344 Q ss_pred hhhccC----ceEEEEeccccccccc-ceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceE Q lcl|Aclame:pro 46 NEITKV----EFNHVKYKKSDVGSDT-LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGEL 120 (378) Q Consensus 46 ~~ia~~----p~~~~~~~~~~~~~~~-~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~ 120 (378) +.+|++ +..+.-.+.+..+.+. ........|.+++.. | ......+..+.+.+..|.+++.+.+++...++ T Consensus 81 ~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~--n---~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~I 155 (517) T protein:vir:98 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH--N---KFIKNLSDYLEPTFALGGLTVRPYVDNGEIEF 155 (517) T ss_pred HHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHh--c---cHHHHHHHHHHHHhhhCCEEEEEEEeCCeeEE Confidence 444443 1111111100000000 000011223333321 1 12223334556666678777766554332222 Q ss_pred EEE-----ee---cCCe------------------EEEeeeE------------EEEEccccCC--cc-ccc---hHHHH Q lcl|Aclame:pro 121 LDL-----LF---ADDK------------------KEYKPEE------------LVRLTSPFYI--NE-DTS---ILDNA 156 (378) Q Consensus 121 ~~~-----~~---~~~~------------------~~~~~~d------------vih~r~~~~~--~~-~~~---~~~~~ 156 (378) -.. +| +.++ ..|.-=+ -.+|+|.++- .. .++ ++... T Consensus 156 ~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~~ 235 (517) T protein:vir:98 156 SWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEEL 235 (517) T ss_pred EEEcCCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCcccccccccccc Confidence 111 11 1000 0000000 0111111100 00 000 00000 Q ss_pred HHHHHH--H-HhcCCcce-eeeeCC--------c--CC-----HH---HHHHHHHHHHHHHHHhhccccc---------- Q lcl|Aclame:pro 157 LASIQT--K-LEQGKLRG-LLKINA--------F--LD-----ID---NTQEYREKALTTIKNMQEGSSY---------- 204 (378) Q Consensus 157 ~~~i~~--~-~~~~~~~g-il~~~~--------~--l~-----~~---~~~~~~~~~~~~~~~~~~~~~~---------- 204 (378) .+.+.. . .+-.+|-. ++..+. . .| .+ +.++...+|...++ .|..+ T Consensus 236 ~e~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~---~g~~~i~vp~~~l~~ 312 (517) T protein:vir:98 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIK---MGQRTVFVSDVMLRT 312 (517) T ss_pred ccCCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHH---hCCcceecChhhhcc Confidence 000100 0 00011111 111110 0 00 00 11111222222111 11110 Q ss_pred ----cce---eEec-------------CCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCHHHhcc------cchHHH Q lcl|Aclame:pro 205 ----NGL---TPVD-------------NKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG------TASQEQ 257 (378) Q Consensus 205 ----~~~---~~l~-------------~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~~------~~~e~~ 257 (378) ++. .+.+ ++-.++.++..-.+-+ .+.++.+.++|+...|++|..++- |++|.. T Consensus 313 ~~~~~g~~~~~~~d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATEi~ 392 (517) T protein:vir:98 313 VPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIV 392 (517) T ss_pred ccCCCCcccCCCCCcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCcccccccccccccHHHHH Confidence 000 0000 1111233232222222 344566778899999999998852 233321 Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhhcCChhHH-------hhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCH Q lcl|Aclame:pro 258 Q-IYFYNSTIIPLLIQLEKELTYKLISTNRR-------RVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQ 329 (378) Q Consensus 258 ~-~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~-------~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~ 329 (378) . .+-.-.++.-+.+.++..|..-+..-.+. ..+....+.+.+.| +.-...|..+.++.+.+++.+|+|++ T Consensus 393 s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f--~D~i~~D~~~~~~~~~~~v~aG~ms~ 470 (517) T protein:vir:98 393 SENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDF--DDGVFQDRSALLRFYGQAKTFGFIPT 470 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEc--CCCCCCCHHHHHHHHHHHHhcCCCCH Confidence 1 11111223333333333332211000000 00111223344444 45567899999999999999999999 Q ss_pred HHHHHH-hCCCCCCCCCeeeec--ccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 330 NQLLVK-MGEQPIEGGDVYIAN--LNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 330 NE~R~~-~gl~p~~gGD~~~~~--~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) -+++.+ .|+..- ..++.+.. .-....+..+. .+...++-.+++| T Consensus 471 ~~~i~~~~g~~ee-eA~~e~~~i~~E~~~~~~~~~----~~~~~~~~~gd~e 517 (517) T protein:vir:98 471 VEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTI----SQRAQKRMFGDEE 517 (517) T ss_pred HHHHHHhCCCChH-HHHHHHHHHHHhccccCCCCc----cccccCCCCCCCC Confidence 998765 476532 11111100 00001111111 1111111122223 No 156 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=94.81 E-value=0.0034 Score=34.09 Aligned_cols=333 Identities=10% Similarity=-0.006 Sum_probs=126.3 Q ss_pred cccCCc-cceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHH Q lcl|Aclame:pro 14 KLNNDT-QRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMD 92 (378) Q Consensus 14 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~ 92 (378) ++.-.. ....... . . ....+..-+|+.+++.+--..| +. ++ . ..+..+.+++.. |.. .. T Consensus 1 ~l~~~~~~~~~~~~-~-~-~v~n~~~~ivd~~~~~l~~~gf---~~-~d-----~---~~~~~~~~i~~~--N~~---d~ 60 (434) T protein:vir:98 1 MLPKNAEQAFLDFQ-R-K-ARTNFCGLIANASVHRLLALGV---TG-PD-----G---EPDTRASRWWQA--NRL---DS 60 (434) T ss_pred CCCCCccHHHHHhh-h-h-hhccchHHHHHHHHhhhccCce---ec-CC-----C---chHHHHHHHHHh--cCh---hH Confidence 111100 0000000 0 0 0112345566666664432222 21 11 0 123446666642 432 34 Q ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCc----------------------------eEEE---Eeec--CCeE---EEeee- Q lcl|Aclame:pro 93 FWRKVIKKLLSAPYVDLYAVFDDNTG----------------------------ELLD---LLFA--DDKK---EYKPE- 135 (378) Q Consensus 93 f~~~~~~~~ll~Gna~~~~~~~~~~g----------------------------~~~~---~~~~--~~~~---~~~~~- 135 (378) ....+..+.+++|.||+++. .+..+ ++.. +|.. ++.. .+.++ T Consensus 61 ~~~~~~~~a~i~G~ay~~v~-~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~ 139 (434) T protein:vir:98 61 RQKLVWRMAMAQSAGYMLVG-AHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDT 139 (434) T ss_pred HHHHHHHHHhhcCceEEEEe-cCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCc Confidence 55667888899999998753 22211 1110 1110 0000 00000 Q ss_pred --------------------------------------EEEEEccccC-CccccchHHHHH-------HHHHHHHh---- Q lcl|Aclame:pro 136 --------------------------------------ELVRLTSPFY-INEDTSILDNAL-------ASIQTKLE---- 165 (378) Q Consensus 136 --------------------------------------dvih~r~~~~-~~~~~~~~~~~~-------~~i~~~~~---- 165 (378) -|+||+|... ...|.|-++... .++....+ T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~~g~sd~e~vi~liDa~~~~~s~~~~~~~~ 219 (434) T protein:vir:98 140 SFPYRTRERTGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGEDPEPEFAGVLDIQDRVNLGILNRMAASRF 219 (434) T ss_pred EEEEEEeeccccccccccccceecccccccccCCCCccceEEeccCCCcCcCCcchhhhHHHHHHHHHHHHHHHHHHHHH Confidence 1344443211 112444333222 22222222 Q ss_pred cCCcceeeeeCCcCCHHH--HHHHHHHHHHHHHHhhccccccceeEec-CCceeeecccchhhhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 166 QGKLRGLLKINAFLDIDN--TQEYREKALTTIKNMQEGSSYNGLTPVD-NKTEIVELKKDYSVLNKDEIDLIKSELLTGY 242 (378) Q Consensus 166 ~~~~~gil~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~f 242 (378) .+.|.-++. ...+.+.. .......+ +.+. ...++++.++ .+.++.++....-..-.+.++....+|+..= T Consensus 220 ~a~p~~~i~-G~~~~~~~~~~~~~~~~~-~~~~-----~~~~~i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~ 292 (434) T protein:vir:98 220 SGFRQKWIK-GHKFAKRTDPATGMTVVD-QPFV-----PSPSAVWASEGENTQFGQLDATDLSGFLKEHASDVRDMLTIS 292 (434) T ss_pred hcchhhhhc-CCCcccccccccccchhh-hhhh-----ccccccccCCCCCceEEEecCcchHHHHHHHHHHHHHHhccc Confidence 222222221 11111110 00111111 1111 1123455554 4677777764332222345677788899999 Q ss_pred CCCHHHhcccch--HHHHHHHHHHHHHHHHHHHHHHHHhhc---CChhHHhhhccccceeeEEecchhhhhcCHHHHHHH Q lcl|Aclame:pro 243 FMNENILLGTAS--QEQQIYFYNSTIIPLLIQLEKELTYKL---ISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDL 317 (378) Q Consensus 243 gVPp~~l~~~~~--e~~~~~f~~~~l~P~~~~ie~~l~~~L---l~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~ 317 (378) ++|++.++++.+ ......|....|.-.+...+..|...| +---....|... ...++.+.+......+..+.+++ T Consensus 293 ~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~-~~~~~~v~w~~~~~~s~~~~ada 371 (434) T protein:vir:98 293 QTPTYLYATDLVNISADTIGALDILHVAKVREHIASFSEGLESVLALAAAQAGVPE-DYTEAEVRWANPAHVTMAVKADA 371 (434) T ss_pred CCCHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-hheeeeEEecCCCCCCHHHHHHH Confidence 999999986421 111111222222222222222221111 000000011111 11223334455677889999999 Q ss_pred HHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeeccc-----ceecccchhccCccCCCCCCCCCCC Q lcl|Aclame:pro 318 YHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLN-----AVAVKNLSDLQGSRKDVTSTDETNN 377 (378) Q Consensus 318 ~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n-----~~~~~~~~~~~~~~~~~~~~~e~~~ 377 (378) +.+++..|+ +..-+++.+|+++-+- +++..-.. .........++.+......++-+++ T Consensus 372 ~~kl~~~g~-~~e~~~~~lg~~~~e~-~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dg 434 (434) T protein:vir:98 372 ATKLKSIGY-PLDVIAEELDESPARV-RRIVAGAASQALLAASLLPAPGAPSAGNVPDSGGAVDG 434 (434) T ss_pred HHHHHhcCC-cHHHHHHhCCCCHHHH-HHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccCCCCC Confidence 999999886 7777788888876210 00000000 0000000000111111111111222 No 157 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=94.78 E-value=0.0035 Score=34.03 Aligned_cols=355 Identities=12% Similarity=0.081 Sum_probs=121.0 Q ss_pred CCcccccccccccc-----ccCCcc------ceeecccch-------hhh----------------------hhHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK-----LNNDTQ------RVTAWQNEA-------VEY----------------------TSAFVTNI 40 (378) Q Consensus 1 M~~f~~~~~~~~~~-----~~~~~~------~~~~~~~~~-------~~~----------------------~~~~v~~~ 40 (378) ||+|.+++.+.+.. ...+-. .+....... ..| +...-..+ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln~~~~i 80 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecchHHHH Confidence 99999987764321 111111 111000000 000 11112233 Q ss_pred HHHHHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceE Q lcl|Aclame:pro 41 HNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGEL 120 (378) Q Consensus 41 i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~ 120 (378) ++..|+-+..=|..+-- ..+ ...+-.|.++|.. |. ...-.+..+.+.+..|.+++.+.++++.-++ T Consensus 81 ~~~~A~lv~~e~~~i~v-~~~--------~~~~e~l~~il~~--n~---f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i 146 (508) T protein:vir:15 81 ARRIASVVFNEKAEIHV-KDN--------NEADKFLNDVLED--ND---FKNKFEEALEKGVALGGFAMRPYIDGNHIKI 146 (508) T ss_pred HHHHHhhhhCCCceEEe-CCc--------hHHHHHHHHHHHh--cc---HHHHHHHHHHHHhhcCceEEEEEEeCCeeEE Confidence 33334333222322210 000 0011224444431 21 1223344556667778777665544322122 Q ss_pred EEE-----ee---cCCe------------------EEEee---eE-----EEEEccccCC-cc---ccchHHHHHHHHHH Q lcl|Aclame:pro 121 LDL-----LF---ADDK------------------KEYKP---EE-----LVRLTSPFYI-NE---DTSILDNALASIQT 162 (378) Q Consensus 121 ~~~-----~~---~~~~------------------~~~~~---~d-----vih~r~~~~~-~~---~~~~~~~~~~~i~~ 162 (378) ... +| +.+. ..|.. .+ -.+|++..+- .. .-.++ .+..+.. T Consensus 147 ~~v~ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v--~l~~~~e 224 (508) T protein:vir:15 147 AWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQV--PLSTLPV 224 (508) T ss_pred EEEcCCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCccc--chhhccc Confidence 111 11 1110 00100 00 0111111000 00 00000 0111100 Q ss_pred H-------HhcC--Ccce-eeeeCCc----------CCH--------HHHHHHHHHHHHHHHH----------hhccccc Q lcl|Aclame:pro 163 K-------LEQG--KLRG-LLKINAF----------LDI--------DNTQEYREKALTTIKN----------MQEGSSY 204 (378) Q Consensus 163 ~-------~~~~--~~~g-il~~~~~----------l~~--------~~~~~~~~~~~~~~~~----------~~~~~~~ 204 (378) . .-.+ +|.. ++..+.. .|. ++.++.-.+|...++. ....+.. T Consensus 225 ~~~l~~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~d~~ 304 (508) T protein:vir:15 225 YKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDE 304 (508) T ss_pred ccCCCcceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcCCCC Confidence 0 0001 1111 1111100 010 0111111112221110 0000000 Q ss_pred cceeEe-------------cCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCHHHhcc------cchHHH------- Q lcl|Aclame:pro 205 NGLTPV-------------DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG------TASQEQ------- 257 (378) Q Consensus 205 ~~~~~l-------------~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~~------~~~e~~------- 257 (378) ++..+- +.|..++.++..-.+-+ .+.++.+.+.|....|++|..++. |++|.. T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~~~~~ 384 (508) T protein:vir:15 305 HKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTY 384 (508) T ss_pred CccccCCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCccccHHHHHHHHHHHH Confidence 111000 11222333333222222 234566677889999999998751 223321 Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHhhcCChhHHh----hhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCC Q lcl|Aclame:pro 258 -----QIYFYNSTIIPLLIQLEKELTYKLISTNRRR----VVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFT 328 (378) Q Consensus 258 -----~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~----~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t 328 (378) ....++.+|..+++.|-.-....-+...... ......+.+.+.| +.-.-.|..+.++.+.+++.+|+++ T Consensus 385 ~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f--~D~i~~d~~~~~~~~~~~v~aGi~s 462 (508) T protein:vir:15 385 QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHF--DDGVFVNKDKQLEEDAKVLAIGALS 462 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEe--CCCCCCCHHHHHHHHHHHHhcCCCC Confidence 1123444555554444333221111000000 0001123344444 4556688899999999999999999 Q ss_pred HHHHHHHh-CCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 329 QNQLLVKM-GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 329 ~NE~R~~~-gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .-+++... |++.- .-++.+... ..+...... ........+.+++| T Consensus 463 ~e~~i~~~~g~~de-ea~~el~ri---~~E~~~~~~-~~~~~~~~~g~~ge 508 (508) T protein:vir:15 463 KQTFLQRNYGMTDE-QAAEELAKI---QSEAPTDTF-EGGRSAILNGGDGE 508 (508) T ss_pred HHHHHHhcCCCChH-HHHHHHHHH---HHhccccCc-cccccccCCCCCCC Confidence 99987653 54421 111111000 000000000 11122233444555 No 158 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=94.64 E-value=0.0039 Score=33.80 Aligned_cols=324 Identities=13% Similarity=0.058 Sum_probs=131.6 Q ss_pred CCcccccccc-ccc-cccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHH Q lcl|Aclame:pro 1 MNLFGKVVSF-SRG-KLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) Q Consensus 1 M~~f~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) +.++...-.. .+. ............ .......++...+|+..++-+-.-|+.+- ..+ + .....|.. T Consensus 58 ~~YY~g~~~i~~~~~~~~~~~~~~~~~--~~~ki~~n~~k~Ivd~~~~~l~G~p~~~~---~~d----~---~~~~~l~~ 125 (483) T protein:vir:12 58 QEYYEQRPDIVKEPKPVDATGAVDPLK--PDDRMITNFHANLVDQKVSYIVGKPIAFK---HTD----D---EVVKRIDE 125 (483) T ss_pred HHHhccccccccccccccccccccccc--cccccccchHHHHHHHHhhhhcccCceec---cCC----h---HHHHHHHH Confidence 1111100000 000 000000000000 00112345566778888877767776541 110 0 11123444 Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eeec-------C------------------Ce-E Q lcl|Aclame:pro 79 VLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLFA-------D------------------DK-K 130 (378) Q Consensus 79 lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~~-------~------------------~~-~ 130 (378) ++. |. .......+..+.+.+|.||+++. .+..|++.- +-|. + .. . T Consensus 126 ~~~---n~---~~~~~~~~~~~~~~~G~~y~~v~-~d~d~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~ 198 (483) T protein:vir:12 126 VLG---NR---FDDKLHSVLTGASNKGIEWLHPY-LDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVE 198 (483) T ss_pred HHh---cc---HHHHHHHHHHHHhhCCeEEEEEE-EcCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeecceEEE Confidence 442 32 23344556788999999998763 455554321 1110 0 00 0 Q ss_pred EEeeeEEEEEc-----------------------cccC---------CccccchH---HHHHHHHHHHH----h----cC Q lcl|Aclame:pro 131 EYKPEELVRLT-----------------------SPFY---------INEDTSIL---DNALASIQTKL----E----QG 167 (378) Q Consensus 131 ~~~~~dvih~r-----------------------~~~~---------~~~~~~~~---~~~~~~i~~~~----~----~~ 167 (378) .|.+..+.|+. ++++ ...+.|.+ ..+.++++..+ + .+ T Consensus 199 ~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~ 278 (483) T protein:vir:12 199 YWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSN 278 (483) T ss_pred EEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhc Confidence 11222333321 0000 01123322 33333333211 1 23 Q ss_pred CcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCH Q lcl|Aclame:pro 168 KLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNE 246 (378) Q Consensus 168 ~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp 246 (378) .+..++.- .. .+...+ +....+ ..+++-++.+.+.+.+......-. ...++.+.+.|+..-++|. T Consensus 279 ~~~lv~~g-~~--~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 344 (483) T protein:vir:12 279 ELTYVLTN-YD--DQELPE----FKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVD 344 (483) T ss_pred Cceeeeec-CC--cccchh----HHHhhh-------hccccccCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCCC Confidence 33333322 11 111111 222111 113444444444444433222222 3445777888988888886 Q ss_pred HH---hcccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhc Q lcl|Aclame:pro 247 NI---LLGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFA 309 (378) Q Consensus 247 ~~---l~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~ 309 (378) .. ++|+.+... ....+...|..+++.|...++.+ .....+++.| ....-. T Consensus 345 ~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~-----------~~~~~i~v~f--~~~~p~ 411 (483) T protein:vir:12 345 FSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK-----------GEHKDVDISF--NYNKVA 411 (483) T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CccceeeEEe--CCCCCC Confidence 33 233333211 12355666666666665554422 1223344555 445667 Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee-----ecccceecccchhccCccCC-CCCCCCCCCC Q lcl|Aclame:pro 310 TLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI-----ANLNAVAVKNLSDLQGSRKD-VTSTDETNNQ 378 (378) Q Consensus 310 d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~-----~~~n~~~~~~~~~~~~~~~~-~~~~~e~~~e 378 (378) |.++.++.+.++ .|+++..-+++++++-+-+. .+++- ......+. .++..+ ....++.+++ T Consensus 412 ~~~~~a~~~~kl--~GiiS~et~~~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~------~~~~~d~~~~~~~~~~~ 480 (483) T protein:vir:12 412 NTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNL------DDGGADGAQQQERSNNK 480 (483) T ss_pred CHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccc------cccccCCcccCCCCCcc Confidence 899999999987 58999988888886532111 11100 00111111 111111 1111111111 No 159 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=94.61 E-value=0.004 Score=33.76 Aligned_cols=328 Identities=13% Similarity=0.059 Sum_probs=130.8 Q ss_pred CCcccc-------ccccccccccCCcc------ce------eecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccc Q lcl|Aclame:pro 1 MNLFGK-------VVSFSRGKLNNDTQ------RV------TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKS 61 (378) Q Consensus 1 M~~f~~-------~~~~~~~~~~~~~~------~~------~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 61 (378) ..|..+ .... ..++.+.-. .. -... .......++...+|+..++-+-.-|+.+- .. T Consensus 50 ~~~i~~~~~~~~r~~~l-~~YY~g~~~I~~~~~~~~~~~~~~~~~-~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~---~~ 124 (492) T protein:vir:94 50 VRYIKQHLEKLPEISIG-QEYYEQRPDIVKEPKPVDATGAVDPLK-PDDRMITNFHANLVDQKVSYIVGKPIAFK---HT 124 (492) T ss_pred HHHHHHHHHHHHHHHHH-HHHhccccccccccccccccccccccc-cccccccchHHHHHHHHHhhhcccCceec---cC Confidence 000000 0000 001111000 00 0000 00112345566778888887777776541 11 Q ss_pred ccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eeec-------C----- Q lcl|Aclame:pro 62 DVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLFA-------D----- 127 (378) Q Consensus 62 ~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~~-------~----- 127 (378) + + .....|..+++ |. -......+....+.+|.||+++. .+..|++.- +-|. + T Consensus 125 d----~---~~~~~l~~~~~---n~---~~~~~~~~~~~a~~~G~a~~~v~-~d~dg~~~~~~~~p~~~~~v~d~~~~~~ 190 (492) T protein:vir:94 125 D----D---EVVKRIDEVLG---NR---FDDKLHSVLTGASNKGIEWLHPY-LDEEGEFKLFRVPAEQGIPIWTDKEHEE 190 (492) T ss_pred c----h---HHHHHHHHHHh---cc---HHHHHHHHHHHHhhCCeEEEEEE-ecCCCceEEEEEcccceEEEEcCCCCCc Confidence 1 0 11233444442 32 33455667889999999998763 455555322 1110 0 Q ss_pred -------------CeE-EEeeeEEEEEc-----------------------cccC---------CccccchHH---HHHH Q lcl|Aclame:pro 128 -------------DKK-EYKPEELVRLT-----------------------SPFY---------INEDTSILD---NALA 158 (378) Q Consensus 128 -------------~~~-~~~~~dvih~r-----------------------~~~~---------~~~~~~~~~---~~~~ 158 (378) ..+ .|....|.++. ++++ ...+.|.++ .+.+ T Consensus 191 ~~a~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~liD 270 (492) T protein:vir:94 191 LEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLID 270 (492) T ss_pred eEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCchHHHHHHHH Confidence 000 11222233321 0010 011333332 2333 Q ss_pred HHHHH----Hh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HH Q lcl|Aclame:pro 159 SIQTK----LE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KD 229 (378) Q Consensus 159 ~i~~~----~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~ 229 (378) +++.. .+ .+.|.-++. +. +.+...+ +.+..+ ..+++-++.+.+.+.+........ .. T Consensus 271 a~d~~~S~~~~~~~~~~~p~lv~~--g~-~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 336 (492) T protein:vir:94 271 AYNRRLSDLSNTFKDSNELTYVLK--NY-DDQELPE----FKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKK 336 (492) T ss_pred HHHHHHHHHHHHHHHhcCceeeee--cC-Ccccchh----hHHHHh-------hccceecCCCCcceeEeccCCHHHHHH Confidence 33221 11 223322222 21 1111111 222221 123444555544444432222222 23 Q ss_pred HHHHHHHHHHHHhCCCHH---HhcccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcc Q lcl|Aclame:pro 230 EIDLIKSELLTGYFMNEN---ILLGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG 292 (378) Q Consensus 230 ~~~~~~~~Ia~~fgVPp~---~l~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~ 292 (378) .++.+.+.|+..-++|.. -++|+.+... ....+...|...++.|...++.+. T Consensus 337 ~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~----------- 405 (492) T protein:vir:94 337 YLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG----------- 405 (492) T ss_pred HHHHHHHHHHHHhCCcCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----------- Confidence 456777888888888742 3334333221 123445556666666655444221 Q ss_pred ccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC--CCCeee-----ecccceecccchhccCc Q lcl|Aclame:pro 293 NLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE--GGDVYI-----ANLNAVAVKNLSDLQGS 365 (378) Q Consensus 293 ~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~--gGD~~~-----~~~n~~~~~~~~~~~~~ 365 (378) ....+++.| ..-+..|.++.++++.++. |+++..-+++++++-+-| .-+++- ............. .. T Consensus 406 ~~~~i~v~f--~~~~p~~~~e~~~~~~kl~--giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~--~~ 479 (492) T protein:vir:94 406 EHKDVDISF--NYNKVANTELQVQTAQQSM--GIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGA--DS 479 (492) T ss_pred ccceeeEEe--cCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccC--CC Confidence 122344444 4456678999999998874 899998888888663311 111110 0011111110000 00 Q ss_pred cCCCCCCCCCCCC Q lcl|Aclame:pro 366 RKDVTSTDETNNQ 378 (378) Q Consensus 366 ~~~~~~~~e~~~e 378 (378) ..++...++..+| T Consensus 480 ~~~~~~~~~~e~e 492 (492) T protein:vir:94 480 AQQQERSNNKESE 492 (492) T ss_pred CccccCCccccCC Confidence 0111111111112 No 160 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=94.43 E-value=0.0044 Score=33.49 Aligned_cols=326 Identities=13% Similarity=0.063 Sum_probs=131.2 Q ss_pred CCcccccc----cc--ccccccCCccc----eeecc-------cchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFGKVV----SF--SRGKLNNDTQR----VTAWQ-------NEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~~~~----~~--~~~~~~~~~~~----~~~~~-------~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) ..|..+.. .. ...++.+.-.- ...+. .........+..-+|+..++-+-.-|+.+ .. ++ T Consensus 50 ~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~-~~--~d- 125 (492) T protein:vir:97 50 VRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF-KH--TD- 125 (492) T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHHHhhhhcccCcee-cc--Cc- Confidence 00000000 00 00011110000 00000 00011224556677888887777777653 11 11 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE--ee-------cC------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL--LF-------AD------- 127 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~--~~-------~~------- 127 (378) + .....|..+++ |. .......+..+++.+|.||.++. .+..|++.-. -| ++ T Consensus 126 ---~---~~~~~l~~~~~---n~---~~~~~~~~~~~~~~~G~a~~~v~-~d~dg~~~~~~~~p~~~~~i~d~~~~~~~~ 192 (492) T protein:vir:97 126 ---D---EVVKRIDEVLG---NR---FDDKLHSVLTGASNKGIEWLHPY-LDEEGEFKLFRVPAEQGIPIWTDKEHEELE 192 (492) T ss_pred ---h---HHHHHHHHHHh---cc---HHHHHHHHHHHHhhcCeEEEEEE-ecCCCceEEEEEcccceEEEEcCCCCCceE Confidence 0 11223444432 32 23444567888999999998764 4545543221 11 00 Q ss_pred -----------CeE-EEeeeEEEEEc-----------------------cccC---------CccccchHH---HHHHHH Q lcl|Aclame:pro 128 -----------DKK-EYKPEELVRLT-----------------------SPFY---------INEDTSILD---NALASI 160 (378) Q Consensus 128 -----------~~~-~~~~~dvih~r-----------------------~~~~---------~~~~~~~~~---~~~~~i 160 (378) ..+ .|.+..+.|+. ++++ ...+.|.++ .+.+++ T Consensus 193 ~~vr~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~ 272 (492) T protein:vir:97 193 AFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAY 272 (492) T ss_pred EEEEEEeeccceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCCCCCCchHhHHHHHHHH Confidence 000 11222222221 0000 011333332 233333 Q ss_pred HHH----Hh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHH Q lcl|Aclame:pro 161 QTK----LE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEI 231 (378) Q Consensus 161 ~~~----~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~ 231 (378) +.. .+ .+.+-.++. +. ..+... .+...++ ..+++.++.+.+.+.+........ ...+ T Consensus 273 d~~~S~~~~~~~~~~~~~l~~~--g~-~~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 338 (492) T protein:vir:97 273 NRRLSDLSNTFKDSNELTYVLK--NY-DDQELP----EFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKKYL 338 (492) T ss_pred HHHHHHHHHHHHHhccceeeee--cC-Ccccch----hHHHHHh-------hccceecCCCCcceeEeccCCHHHHHHHH Confidence 221 11 122322222 21 111111 2222221 123455555555554543222222 3445 Q ss_pred HHHHHHHHHHhCCCHHH---hcccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcccc Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENI---LLGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~---l~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~ 294 (378) +.+.+.|+..-++|... ++|+.+... ....+...|..+++.|...++.+ ... T Consensus 339 ~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~-----------~~~ 407 (492) T protein:vir:97 339 DELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK-----------GEH 407 (492) T ss_pred HHHHHHHHHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------ccc Confidence 77788888888888532 333333221 12344556666666665544321 122 Q ss_pred ceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee-----ecccceecccchhccCccC Q lcl|Aclame:pro 295 YYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI-----ANLNAVAVKNLSDLQGSRK 367 (378) Q Consensus 295 ~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~-----~~~n~~~~~~~~~~~~~~~ 367 (378) ..+++.| ....-.|.++.++++.++ .|+++..-+.+++++-+-+. -+++- ...+...+ .++.. T Consensus 408 ~~i~v~f--~~~~p~~~~e~a~~~~kl--~G~iS~et~l~~l~~v~d~~~Eleri~~E~~~~~~~~~~~------~~~~~ 477 (492) T protein:vir:97 408 KDVDISF--NYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNL------DDGGA 477 (492) T ss_pred ceeeEEe--cCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhcc------ccCCC Confidence 3344555 445667889999999887 58999888888886533111 11110 00111111 11111 Q ss_pred CCCCCCCCC----CC Q lcl|Aclame:pro 368 DVTSTDETN----NQ 378 (378) Q Consensus 368 ~~~~~~e~~----~e 378 (378) +..+.+++. +| T Consensus 478 ~~~~~~~~~~~~~~e 492 (492) T protein:vir:97 478 DSAQQQERSNNKESE 492 (492) T ss_pred CCCcccccccccccC Confidence 111111111 11 No 161 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=94.35 E-value=0.0047 Score=33.37 Aligned_cols=303 Identities=9% Similarity=-0.043 Sum_probs=120.2 Q ss_pred CCcccccccc----------ccccccCCc----cceeecccchhhh--hhHHHHHHHHHHHhhhccCceEEEEecccccc Q lcl|Aclame:pro 1 MNLFGKVVSF----------SRGKLNNDT----QRVTAWQNEAVEY--TSAFVTNIHNKIANEITKVEFNHVKYKKSDVG 64 (378) Q Consensus 1 M~~f~~~~~~----------~~~~~~~~~----~~~~~~~~~~~~~--~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~ 64 (378) ..+.+++... ...++.+.. .++..-..-...+ -..+..-+|+.+|+.+.=-- |+ T Consensus 3 ~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~G---f~------- 72 (409) T protein:vir:94 3 EKGIGYLRFKLSVHKRRAEMRYDQYAMKYVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFRE---FE------- 72 (409) T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccCchhhcChhhhHHHHHHHhhhcchhHHHHHHhHhhcccCc---cc------- Confidence 1111111100 001111110 0111000000001 11234455565555432111 11 Q ss_pred cccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE--EEeec---------------- Q lcl|Aclame:pro 65 SDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL--DLLFA---------------- 126 (378) Q Consensus 65 ~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~--~~~~~---------------- 126 (378) ..+..|.+++.. |.. ......+..+.+++|.||+++. .+..|++. ..-|. T Consensus 73 ------~~d~~l~~i~~~--N~l---d~~~~~~~~~aliyG~sf~~v~-~~~dg~~~i~~~sp~~~~~i~D~~~~~~~~a 140 (409) T protein:vir:94 73 ------NDDFTVNEIFEE--NNP---DIFFDSAVLSSLIASCSFTYIS-KGENDAVRLQVIEAVNATGIIDPITGLLTEG 140 (409) T ss_pred ------CCchHHHHHHHh--cCh---hHHHHHHHHHHHHhcceeEEEe-cCCCCceEEEEeccceEEEEEecCCCceeee Confidence 122346666642 433 2344567788899999998763 44455431 11110 Q ss_pred --------CC-e---EEEeeeE----------------------EEEEccccC--Cccccc----hHHHHHHHHHH---- Q lcl|Aclame:pro 127 --------DD-K---KEYKPEE----------------------LVRLTSPFY--INEDTS----ILDNALASIQT---- 162 (378) Q Consensus 127 --------~~-~---~~~~~~d----------------------vih~r~~~~--~~~~~~----~~~~~~~~i~~---- 162 (378) .+ . ..|.+++ |+||.|... ...|.| ++..+.+++.. T Consensus 141 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~ 220 (409) T protein:vir:94 141 YAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLER 220 (409) T ss_pred EEEEEecCCCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHHHHH Confidence 00 0 0122222 233332100 111222 23333333322 Q ss_pred HHh----cCCc-ceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEec-----CCceeeecccchhhhhHHHHH Q lcl|Aclame:pro 163 KLE----QGKL-RGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVD-----NKTEIVELKKDYSVLNKDEID 232 (378) Q Consensus 163 ~~~----~~~~-~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~g~~~~~l~~~~~~~~~~~~~ 232 (378) ... .+.| +.++-.+.+-. ..+.|+.... +++.++ .+.++.+++...-.--.+.++ T Consensus 221 ~~~~~e~~a~pqr~i~G~d~d~~------~~~~~~~~~~---------~i~~~~~d~dg~~~~v~q~~~~~l~~~~~~l~ 285 (409) T protein:vir:94 221 ADVTAEFYSFPQKYVTGLSDDAE------PMETWKATVS---------SMLQFTKDEDGDKPTLGQFTQPSMSPFTEQLR 285 (409) T ss_pred HHHHHHHhcChhheeEecCCCCc------ccchhhhhHH---------HhhcCCCCCCCCCceEEecCCCChhHHHHHHH Confidence 111 2233 33332221111 1223443322 234332 335666664322111135567 Q ss_pred HHHHHHHHHhCCCHHHhcccchHHH---HHHHHHHHHHHHHHH----HHHHHHhhcCChhHHhhhc----cccceeeEEe Q lcl|Aclame:pro 233 LIKSELLTGYFMNENILLGTASQEQ---QIYFYNSTIIPLLIQ----LEKELTYKLISTNRRRVVK----GNLYYERIIV 301 (378) Q Consensus 233 ~~~~~Ia~~fgVPp~~l~~~~~e~~---~~~f~~~~l~P~~~~----ie~~l~~~Ll~~~~~~~g~----~~~~~~~~~~ 301 (378) .+..++|..-++|++.+++...+.. ........|.-.++. +.+.+.+-+----....+. ...+.+++.| T Consensus 286 ~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~W 365 (409) T protein:vir:94 286 TAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPKW 365 (409) T ss_pred HHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEEe Confidence 8888999999999999986432111 111111111111111 1111111000000000000 0112233333 Q ss_pred cchhhhhcC---HHHHHHHHHHHHhCC--CCCHHHHHHHhCCCCCC Q lcl|Aclame:pro 302 DNQLFKFAT---LKELIDLYHENINGP--IFTQNQLLVKMGEQPIE 342 (378) Q Consensus 302 d~~~l~~~d---~~~~~~~~~~~~~~G--~~t~NE~R~~~gl~p~~ 342 (378) ..+...+ ....++++.|++++| +...+-+++++|+..-+ T Consensus 366 --~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 366 --EPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred --ccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 3333333 456688899999999 66778999999999765 No 162 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=94.11 E-value=0.0054 Score=33.03 Aligned_cols=337 Identities=14% Similarity=0.030 Sum_probs=134.7 Q ss_pred CCc----------------------c-------ccccccccccccCCccce----eecccchhhhhhHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MNL----------------------F-------GKVVSFSRGKLNNDTQRV----TAWQNEAVEYTSAFVTNIHNKIANE 47 (378) Q Consensus 1 M~~----------------------f-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~i~~ia~~ 47 (378) |+. . .+.....+ ++.+.-... ............++....|+..++- T Consensus 1 ~~~~~~~~~~~p~d~~~~~~~l~~~i~~~~~~~~r~~~~~~-yy~g~~~i~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~ 79 (453) T protein:vir:39 1 MKYKPPKLMTFPKDEPITNEVVTKFMEKHRLEVARYEYLKN-MYRGIMAIDAEPTKDLWKPDNRLTVNFTKYIVDTFTGY 79 (453) T ss_pred CeecCCcceEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HhhccCchhcCCCccccCccceeecchHHHHHHHHhhh Confidence 100 0 00000000 010000000 0000000112234556677777777 Q ss_pred hccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE--ee Q lcl|Aclame:pro 48 ITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL--LF 125 (378) Q Consensus 48 ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~--~~ 125 (378) +-.-|+.+-. .+ ......|.++++. | ........+....+.+|.||+++ +.+..|.+.-. -| T Consensus 80 l~g~~~~~~~---~d-------~~~~~~l~~i~~~--N---~~~~~~~~~~~~~~~~G~~~~~v-~~d~~g~~~i~~~~p 143 (453) T protein:vir:39 80 FNGIPVKKSH---SD-------KETLSKLQEFDNL--N---DMEDEESELAKMACIYGRAFELL-YQNEETQTNVIYNTP 143 (453) T ss_pred hcccCceecc---CC-------hHHHHHHHHHHHh--c---ChhHHHHHHHHHHhhcCeEEEEE-EecCCCceEEEEEcc Confidence 7677765411 10 0122446666653 3 23345667888999999999875 35555554311 11 Q ss_pred c-----------------------CCeE----EEeeeEEEEEcc-------------ccC---------CccccchH--- Q lcl|Aclame:pro 126 A-----------------------DDKK----EYKPEELVRLTS-------------PFY---------INEDTSIL--- 153 (378) Q Consensus 126 ~-----------------------~~~~----~~~~~dvih~r~-------------~~~---------~~~~~~~~--- 153 (378) . .+.. .|.++.+.++.. +++ ...+.|.+ T Consensus 144 ~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v 223 (453) T protein:vir:39 144 ENMFMVYDDTIKQEPLFAVRYGYDDDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYFNEERMSIFESV 223 (453) T ss_pred cceEEEecCCCCCeEEEEEEEEEeCCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecCCCCCCcchhhh Confidence 0 1100 122233333220 000 01133322 Q ss_pred HHHHHHHHH----HH----hcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhh Q lcl|Aclame:pro 154 DNALASIQT----KL----EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSV 225 (378) Q Consensus 154 ~~~~~~i~~----~~----~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~ 225 (378) ..+.++++. .. ..+.|..++ +...++++.... ++.. ....-. +....+.+.+++.+..+... T Consensus 224 ~~liDa~~~~~s~~~~~~~~~~~p~~~~-~g~~~~~~~~~~----~~~~--~~~~~~---~~~~~~~~~~~~~lt~~~~~ 293 (453) T protein:vir:39 224 ISLVNAFNKAISEKANDVDYFSDQYLTF-LGAAVEEEDLKN----IRSN--RVINYY---GESSEAKNVDVKFLEKPDSD 293 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHhhCceeee-ecCCCCchhhhh----hhhc--ceeeec---CCCCCCCCCceeEEeecCCH Confidence 223333322 11 123333333 233344433222 1110 000000 00111223333333322222 Q ss_pred hh-HHHHHHHHHHHHHHhCCCHHHhc--ccchH--------------HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHh Q lcl|Aclame:pro 226 LN-KDEIDLIKSELLTGYFMNENILL--GTASQ--------------EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRR 288 (378) Q Consensus 226 ~~-~~~~~~~~~~Ia~~fgVPp~~l~--~~~~e--------------~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~ 288 (378) .. ...++.+.+.|+..-++|..-.. |+.+. ......+...|...++.+...++.+-- T Consensus 294 ~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~------ 367 (453) T protein:vir:39 294 SQTENLLDRLTKLIFQTTMVANISDESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSN------ 367 (453) T ss_pred HHHHHHHHHHHHHHHHHhCCcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------ Confidence 22 23456777888888888743221 22221 112245566677777766655443211 Q ss_pred hhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecccceec-ccchhcc-C Q lcl|Aclame:pro 289 VVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANLNAVAV-KNLSDLQ-G 364 (378) Q Consensus 289 ~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~-~~~~~~~-~ 364 (378) ......+++.| ..-...|.++.++++.++ .|+++.--+.+++++-+-|. .+.+. .--... ....... + T Consensus 368 --~~~~~~i~v~f--~~~~p~~~~~~a~~~~kl--~g~is~et~l~~l~~v~D~~~E~~ri~--~E~~~~~~~~~~~~~~ 439 (453) T protein:vir:39 368 --KEAWKDIEYTF--TRNEPKDIKEQAETANIL--MGITSQETALSVISVIPDVQAEMEKIK--KEEASTAIFDKDKQPS 439 (453) T ss_pred --ccccccceEEe--CCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHH--HHHHHHHHHHHhccCC Confidence 11112334555 345667889999999887 57899988888886533111 11100 000000 0000111 1 Q ss_pred ccCCCCCCCCCCCC Q lcl|Aclame:pro 365 SRKDVTSTDETNNQ 378 (378) Q Consensus 365 ~~~~~~~~~e~~~e 378 (378) ....+...+++++| T Consensus 440 ~~~~~~~~~~~~~e 453 (453) T protein:vir:39 440 EKGTDTVVPETNEE 453 (453) T ss_pred CCCCCCCCCCcCCC Confidence 11222233344444 No 163 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=94.07 E-value=0.0055 Score=32.97 Aligned_cols=303 Identities=9% Similarity=-0.038 Sum_probs=118.9 Q ss_pred CCccccccc----c------ccccccCCc----cceeecccchhhh--hhHHHHHHHHHHHhhhccCceEEEEecccccc Q lcl|Aclame:pro 1 MNLFGKVVS----F------SRGKLNNDT----QRVTAWQNEAVEY--TSAFVTNIHNKIANEITKVEFNHVKYKKSDVG 64 (378) Q Consensus 1 M~~f~~~~~----~------~~~~~~~~~----~~~~~~~~~~~~~--~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~ 64 (378) ..+.+.+.. . ...++.+.. .++..-..-...+ -..+..-+|+.+|+.+.=-- |+ T Consensus 3 ~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~G---f~------- 72 (409) T protein:vir:16 3 EKGIGYLRFKLSVHKRRAEMRYEQYAMKHVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFRE---FE------- 72 (409) T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhccCchhhcchhhhHHHHHHHhhhcChhHHHHHHhHhhccccc---cc------- Confidence 011111100 0 000111110 0111100000001 11233445555555432111 11 Q ss_pred cccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE--EEeec---------------- Q lcl|Aclame:pro 65 SDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL--DLLFA---------------- 126 (378) Q Consensus 65 ~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~--~~~~~---------------- 126 (378) ..+..|.+++.. |.. ......+..+.+++|.||+++. .+..|.+. ..-|. T Consensus 73 ------~~d~~l~~i~~~--N~l---d~~~~~~~~~al~yG~sf~~v~-~~~dg~~~i~~~sP~~~~~i~D~~~~~~~~a 140 (409) T protein:vir:16 73 ------NDDFTVNEIFEE--NNP---DIFFDSTVLSALIASCSFTYIS-KGENDAVRLQVIEATNATGIIDPITGLLTEG 140 (409) T ss_pred ------CcchHHHHHHHh--cCh---hHHHHHHHHHHHHhCceeEEEe-cCCCCceEEEEEcccceEEEeecccccceee Confidence 122346666642 432 2344567788899999998763 44455431 11110 Q ss_pred ---------CCe---EEEeeeE----------------------EEEEccccC--Cccccc----hHHHHHHHHH----H Q lcl|Aclame:pro 127 ---------DDK---KEYKPEE----------------------LVRLTSPFY--INEDTS----ILDNALASIQ----T 162 (378) Q Consensus 127 ---------~~~---~~~~~~d----------------------vih~r~~~~--~~~~~~----~~~~~~~~i~----~ 162 (378) +.. ..|.+++ |++|.|... .-.|.| ++..+.+++. . T Consensus 141 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~ 220 (409) T protein:vir:16 141 YAVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLER 220 (409) T ss_pred eEEEEecCCCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHHHHH Confidence 000 0112222 333332111 111222 2323333322 2 Q ss_pred HHh----cCCc-ceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEec-----CCceeeecccchhhhhHHHHH Q lcl|Aclame:pro 163 KLE----QGKL-RGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVD-----NKTEIVELKKDYSVLNKDEID 232 (378) Q Consensus 163 ~~~----~~~~-~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~g~~~~~l~~~~~~~~~~~~~ 232 (378) ... .+.| +.++-.+.+-.+ .+.|+... ++++.++ .+.++.+++...-.--.+.++ T Consensus 221 ~~~~~e~~a~pqr~i~G~d~d~~~------~~~~~~~~---------~~i~~~~~d~~g~~~~v~q~~~~~l~~~~~~l~ 285 (409) T protein:vir:16 221 ADVTAEFYSFPQKYVTGLSDDAEP------METWKATV---------SSMLQFTKDEDGDKPTLGQFTQPSMSPFTEQLR 285 (409) T ss_pred HHHHHHHhcChhheeEecCCCCCc------cchhhhhh---------hHhhccCCCCCCCCceEEecCCCChhHHHHHHH Confidence 111 2222 333322211111 12343322 2344442 335666664432111135567 Q ss_pred HHHHHHHHHhCCCHHHhcccchHHH---HHHHHHHHHHHHHHH----HHHHHHhhcCChhHHhhhcc----ccceeeEEe Q lcl|Aclame:pro 233 LIKSELLTGYFMNENILLGTASQEQ---QIYFYNSTIIPLLIQ----LEKELTYKLISTNRRRVVKG----NLYYERIIV 301 (378) Q Consensus 233 ~~~~~Ia~~fgVPp~~l~~~~~e~~---~~~f~~~~l~P~~~~----ie~~l~~~Ll~~~~~~~g~~----~~~~~~~~~ 301 (378) .+..++|..=++|++.+++...+.. ........|.-.++. +.+.+.+-+-.--....+.. ....+++.+ T Consensus 286 ~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~v~W 365 (409) T protein:vir:16 286 TAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTKPKW 365 (409) T ss_pred HHHHHHhhhcCCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccceEEe Confidence 8888999999999999986532111 111111111111111 11111110000000000000 011223333 Q ss_pred cchhhh---hcCHHHHHHHHHHHHhCCC--CCHHHHHHHhCCCCCC Q lcl|Aclame:pro 302 DNQLFK---FATLKELIDLYHENINGPI--FTQNQLLVKMGEQPIE 342 (378) Q Consensus 302 d~~~l~---~~d~~~~~~~~~~~~~~G~--~t~NE~R~~~gl~p~~ 342 (378) ..+. ..+....++++.|++++|. ...+-+++++|+..-+ T Consensus 366 --~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 366 --EPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred --cCCCCcchhhHHHHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 2232 3346788999999999973 3457779999998655 No 164 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=93.94 E-value=0.0059 Score=32.81 Aligned_cols=351 Identities=10% Similarity=-0.035 Sum_probs=127.8 Q ss_pred CCcccc--------------ccccccccccCCccceeecccc-hhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccc Q lcl|Aclame:pro 1 MNLFGK--------------VVSFSRGKLNNDTQRVTAWQNE-AVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGS 65 (378) Q Consensus 1 M~~f~~--------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~ 65 (378) +.+... ...+-.+.-.-...+..+-... .+.....+..-||+.+|+.+.--.| +.. ++ T Consensus 17 ~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~~~~~~~~p~~~r~~~~v~nw~~~~Vd~~a~rl~~~Gf---~~~-d~--- 89 (474) T protein:vir:81 17 NALINGLLAQIENLRWKNLLRTSYYENKRTIQYVGTLIPPQYFNLGLVLGWTGKAVDALARRCNLEGF---VWP-DG--- 89 (474) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhccCCChhhccccccHHHHHHHhhcChHHHHHHHHHhhhcccce---ECC-CC--- Confidence 111110 1111111111001111111000 0011123445667777765543333 211 11 Q ss_pred ccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCce--EE--EEee---------------- Q lcl|Aclame:pro 66 DTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGE--LL--DLLF---------------- 125 (378) Q Consensus 66 ~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~--~~--~~~~---------------- 125 (378) ...+..+.++++ -|... .....+..+.+++|.||+.+. .+..|. +. .+-| T Consensus 90 ----~~~~~~l~~iw~--~N~ld---~~~~~~~~~al~~G~sf~~V~-~~~d~~~~~~i~~~sp~~~~~~~D~~~~~~~~ 159 (474) T protein:vir:81 90 ----DLDSLGGTEVVD--DNHLL---SEIDSAIVAAMQHGPAFLINT-VGEDDEPEALIHVKDASEATGEWNRRRRGLNN 159 (474) T ss_pred ----CccchHHHHHHH--hcChh---HHHHHHHHHHHhhCceeEEEe-cCCCCCceeEEEEeccceEEEEEeCCCCccee Confidence 112344666664 24332 344556778899999998764 333332 11 1111 Q ss_pred ---------cCCe---EEEeeeE-------------------------EEEEccccCCc--cccc----hHHHHHHHHHH Q lcl|Aclame:pro 126 ---------ADDK---KEYKPEE-------------------------LVRLTSPFYIN--EDTS----ILDNALASIQT 162 (378) Q Consensus 126 ---------~~~~---~~~~~~d-------------------------vih~r~~~~~~--~~~~----~~~~~~~~i~~ 162 (378) ++.. .-|.++. |++|.|..... .|.| ++..+.+++.. T Consensus 160 al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n~~~~~~~~G~s~i~e~v~~l~da~~r 239 (474) T protein:vir:81 160 LLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPAPKRPFGQSRITKPMMGLQDAGVR 239 (474) T ss_pred eeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEecccccccCcCCccccchhHHHHHHHHHH Confidence 0000 0111222 33332210000 1222 22223333221 Q ss_pred ----HH----hcCCc-ceeeeeCC-cCCHHHHHHHHHHHHHHHHHhhccc-cccceeEecCCceeeecccchhhhhHHHH Q lcl|Aclame:pro 163 ----KL----EQGKL-RGLLKINA-FLDIDNTQEYREKALTTIKNMQEGS-SYNGLTPVDNKTEIVELKKDYSVLNKDEI 231 (378) Q Consensus 163 ----~~----~~~~~-~gil~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~l~~~~~~~~~~~~ 231 (378) .. ..+.| +.++-... ...++ .......|+..+.....-. +..+..+...+.++.++....-.--.+.+ T Consensus 240 ~~~~~~~~~e~~a~pqr~i~G~~~~~~~d~-d~~~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~a~l~~~~~~l 318 (474) T protein:vir:81 240 ELARREGHMDVFSYPEFWLLGADESALKNA-DGTIKSVWEARLGRIKGLPDDADADIPQLARADVKQFPAASPDAHWSDI 318 (474) T ss_pred HHHHHHHHHHHhcchhheeecCChhhcccc-cccccchhhhhHHHHhcCCCcccccccccccccccccCCCChhHHHHHH Confidence 11 12223 33332211 11111 1122344554443322111 11122222334566666543322123556 Q ss_pred HHHHHHHHHHhCCCHHHhc-cc----chHHHHHHHHHHHHH----HHHHHHHHHHHhhcCChhHHhhhcc----ccceee Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENILL-GT----ASQEQQIYFYNSTII----PLLIQLEKELTYKLISTNRRRVVKG----NLYYER 298 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~l~-~~----~~e~~~~~f~~~~l~----P~~~~ie~~l~~~Ll~~~~~~~g~~----~~~~~~ 298 (378) +.+..++|..-++|++.|| ++ .+.+.. ...+..|. -..+.+.+.+.+.+----....+.. ...... T Consensus 319 ~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi-~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~ 397 (474) T protein:vir:81 319 NGLAKLFAREASLPDTAVAISGLSNPTSAESY-DASQYELIAEAEGAVDDFTPALRKAFIRALAMKNKVAIDEIPDEWKS 397 (474) T ss_pred HHHHHHHHhhhCCCHHHhcccccccccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhcc Confidence 7778899999999999885 21 121111 11111111 1111112222111100000000000 001122 Q ss_pred EEecchhhhhcCHHHHHHHHHHHHhCCC--CCHHHHHHHhCCCCCCC---CCeeeecccceecccchhccCccCCCCCCC Q lcl|Aclame:pro 299 IIVDNQLFKFATLKELIDLYHENINGPI--FTQNQLLVKMGEQPIEG---GDVYIANLNAVAVKNLSDLQGSRKDVTSTD 373 (378) Q Consensus 299 ~~~d~~~l~~~d~~~~~~~~~~~~~~G~--~t~NE~R~~~gl~p~~g---GD~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 373 (378) +.+.+......+..++++++.|++++|. .+..=+++++|+.|-+= -+....-....+++.+.. ..++..+. T Consensus 398 ~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t~~~i~~~~~~~~~~~~~~~~~~l~~----~~~~~~~a 473 (474) T protein:vir:81 398 IDAKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLTPQQARRAMADKRRVQGRGTLQALID----RSNNGATA 473 (474) T ss_pred ceeEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHh----cCCCCCCC Confidence 3333345667788999999999999874 33344678889886421 100000011111221111 01111111 Q ss_pred C Q lcl|Aclame:pro 374 E 374 (378) Q Consensus 374 e 374 (378) + T Consensus 474 q 474 (474) T protein:vir:81 474 Q 474 (474) T ss_pred C Confidence 1 No 165 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=93.89 E-value=0.006 Score=32.75 Aligned_cols=327 Identities=10% Similarity=0.005 Sum_probs=127.4 Q ss_pred CCcc----------cccccccccc---------ccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccc Q lcl|Aclame:pro 1 MNLF----------GKVVSFSRGK---------LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKS 61 (378) Q Consensus 1 M~~f----------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 61 (378) ..+. .+...+-.+. ............ ......+....+|+..++-+-.-|+.+- . . T Consensus 33 ~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~--~~ki~~n~~k~Ivd~~~~~l~g~p~~~~-~--~ 107 (474) T protein:vir:97 33 VRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKP--DWRITTNFHQNLVDQKVSYVASKPVTYS-C--E 107 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccC--cceeecchHHHHHHHHHhhhhcCCceec-c--C Confidence 0000 0000000000 000000000000 0112234456677888888877787641 1 1 Q ss_pred ccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e-------cC----- Q lcl|Aclame:pro 62 DVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F-------AD----- 127 (378) Q Consensus 62 ~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~-------~~----- 127 (378) + +.....+..++. |. .......+....+.+|.||+++ +.+..|++.-.+ | ++ T Consensus 108 d-------~~~~~~l~~~~~---n~---~~~~~~e~~~~~~~~G~~~~~~-~~d~~~~~~i~~~~p~~~~~v~d~~~~~~ 173 (474) T protein:vir:97 108 D-------ENVLKVIHDVLD---TR---WDNKLIDILTATSNKGIDWLQV-YINENGEMKLFRVPAEQAIPIWVDKEREE 173 (474) T ss_pred c-------HHHHHHHHHHHh---cc---HHHHHHHHHHHHhhcCceEEEE-EecCCCeeEEEEEcccceEEEEcCCCCCc Confidence 0 112223333331 22 3344455678889999999875 355555543211 1 00 Q ss_pred -----------Ce---EEEeeeEEEEE-----------------------------------ccccCCccccchHHHHHH Q lcl|Aclame:pro 128 -----------DK---KEYKPEELVRL-----------------------------------TSPFYINEDTSILDNALA 158 (378) Q Consensus 128 -----------~~---~~~~~~dvih~-----------------------------------r~~~~~~~~~~~~~~~~~ 158 (378) +. ..|..+.+.++ ++...+...+.++..+.+ T Consensus 174 ~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liD 253 (474) T protein:vir:97 174 LKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSIID 253 (474) T ss_pred eEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHHHH Confidence 00 01222333332 221111111222233333 Q ss_pred HHHH----HHh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HH Q lcl|Aclame:pro 159 SIQT----KLE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KD 229 (378) Q Consensus 159 ~i~~----~~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~ 229 (378) +++. ..+ .+.|.-++. ....++. . .+.... ...+++.+++|.+.+.+......-. .. T Consensus 254 a~n~~~s~~~~~~~~~~~~~lv~~-g~~~~~~--~----~~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~~~~~~ 319 (474) T protein:vir:97 254 AIDKRLSDAQNMFDESVELIYILK-GYEGEDL--E----EFMRGL-------KYYKAINVDGDGGVETIQVEVPVSSTKE 319 (474) T ss_pred HHHHHHHHHHHHHHHhcCceeeee-cCCcccc--h----hhhhhh-------hccceeeccCCCceeEEeecCCHHHHHH Confidence 3332 111 122222221 1122111 1 111111 1234566666666555543322222 23 Q ss_pred HHHHHHHHHHHHhCCCHHH---hcccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcc Q lcl|Aclame:pro 230 EIDLIKSELLTGYFMNENI---LLGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG 292 (378) Q Consensus 230 ~~~~~~~~Ia~~fgVPp~~---l~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~ 292 (378) .++.+.+.|...-++|..- ++|+.+... ....+...|..+++.|.+-++.+ . T Consensus 320 ~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~-----------~ 388 (474) T protein:vir:97 320 YIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLK-----------T 388 (474) T ss_pred HHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------c Confidence 4567778888888887422 233323211 12355666666666665544322 1 Q ss_pred ccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC--CCCeee-----ecccceecccchhccCc Q lcl|Aclame:pro 293 NLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE--GGDVYI-----ANLNAVAVKNLSDLQGS 365 (378) Q Consensus 293 ~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~--gGD~~~-----~~~n~~~~~~~~~~~~~ 365 (378) ....+++.|+. -.-.|.++.++ .+.++|+++.--+++++++-+-| .-+.+- ......+.+..+. . . T Consensus 389 d~~~i~v~f~~--~~p~~~~e~a~---~~~~~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~-~-~ 461 (474) T protein:vir:97 389 DVKDIEISFNF--NRMMNDAEQSQ---IIAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGA-D-G 461 (474) T ss_pred ccceeeEEecc--CcccCHHHHHH---HHHHcCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCC-C-C Confidence 12334555543 23345555444 45667999999888888652211 111000 0011111111000 0 0 Q ss_pred cCCCCCCCCCCCC Q lcl|Aclame:pro 366 RKDVTSTDETNNQ 378 (378) Q Consensus 366 ~~~~~~~~e~~~e 378 (378) ..+.+..++..+| T Consensus 462 ~~~~~~~~~~~~e 474 (474) T protein:vir:97 462 AQQQEGSNNKESE 474 (474) T ss_pred cccCCCCcccccC Confidence 1111111112222 No 166 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=93.89 E-value=0.006 Score=32.75 Aligned_cols=327 Identities=10% Similarity=0.005 Sum_probs=127.4 Q ss_pred CCcc----------cccccccccc---------ccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEeccc Q lcl|Aclame:pro 1 MNLF----------GKVVSFSRGK---------LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKS 61 (378) Q Consensus 1 M~~f----------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 61 (378) ..+. .+...+-.+. ............ ......+....+|+..++-+-.-|+.+- . . T Consensus 33 ~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~--~~ki~~n~~k~Ivd~~~~~l~g~p~~~~-~--~ 107 (474) T protein:vir:94 33 VRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKP--DWRITTNFHQNLVDQKVSYVASKPVTYS-C--E 107 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccC--cceeecchHHHHHHHHHhhhhcCCceec-c--C Confidence 0000 0000000000 000000000000 0112234456677888888877787641 1 1 Q ss_pred ccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e-------cC----- Q lcl|Aclame:pro 62 DVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F-------AD----- 127 (378) Q Consensus 62 ~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~-------~~----- 127 (378) + +.....+..++. |. .......+....+.+|.||+++ +.+..|++.-.+ | ++ T Consensus 108 d-------~~~~~~l~~~~~---n~---~~~~~~e~~~~~~~~G~~~~~~-~~d~~~~~~i~~~~p~~~~~v~d~~~~~~ 173 (474) T protein:vir:94 108 D-------ENVLKVIHDVLD---TR---WDNKLIDILTATSNKGIDWLQV-YINENGEMKLFRVPAEQAIPIWVDKEREE 173 (474) T ss_pred c-------HHHHHHHHHHHh---cc---HHHHHHHHHHHHhhcCceEEEE-EecCCCeeEEEEEcccceEEEEcCCCCCc Confidence 0 112223333331 22 3344455678889999999875 355555543211 1 00 Q ss_pred -----------Ce---EEEeeeEEEEE-----------------------------------ccccCCccccchHHHHHH Q lcl|Aclame:pro 128 -----------DK---KEYKPEELVRL-----------------------------------TSPFYINEDTSILDNALA 158 (378) Q Consensus 128 -----------~~---~~~~~~dvih~-----------------------------------r~~~~~~~~~~~~~~~~~ 158 (378) +. ..|..+.+.++ ++...+...+.++..+.+ T Consensus 174 ~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liD 253 (474) T protein:vir:94 174 LKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSIID 253 (474) T ss_pred eEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHHHH Confidence 00 01222333332 221111111222233333 Q ss_pred HHHH----HHh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HH Q lcl|Aclame:pro 159 SIQT----KLE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KD 229 (378) Q Consensus 159 ~i~~----~~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~ 229 (378) +++. ..+ .+.|.-++. ....++. . .+.... ...+++.+++|.+.+.+......-. .. T Consensus 254 a~n~~~s~~~~~~~~~~~~~lv~~-g~~~~~~--~----~~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~~~~~~ 319 (474) T protein:vir:94 254 AIDKRLSDAQNMFDESVELIYILK-GYEGEDL--E----EFMRGL-------KYYKAINVDGDGGVETIQVEVPVSSTKE 319 (474) T ss_pred HHHHHHHHHHHHHHHhcCceeeee-cCCcccc--h----hhhhhh-------hccceeeccCCCceeEEeecCCHHHHHH Confidence 3332 111 122222221 1122111 1 111111 1234566666666555543322222 23 Q ss_pred HHHHHHHHHHHHhCCCHHH---hcccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcc Q lcl|Aclame:pro 230 EIDLIKSELLTGYFMNENI---LLGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG 292 (378) Q Consensus 230 ~~~~~~~~Ia~~fgVPp~~---l~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~ 292 (378) .++.+.+.|...-++|..- ++|+.+... ....+...|..+++.|.+-++.+ . T Consensus 320 ~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~-----------~ 388 (474) T protein:vir:94 320 YIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLK-----------T 388 (474) T ss_pred HHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------c Confidence 4567778888888887422 233323211 12355666666666665544322 1 Q ss_pred ccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC--CCCeee-----ecccceecccchhccCc Q lcl|Aclame:pro 293 NLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE--GGDVYI-----ANLNAVAVKNLSDLQGS 365 (378) Q Consensus 293 ~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~--gGD~~~-----~~~n~~~~~~~~~~~~~ 365 (378) ....+++.|+. -.-.|.++.++ .+.++|+++.--+++++++-+-| .-+.+- ......+.+..+. . . T Consensus 389 d~~~i~v~f~~--~~p~~~~e~a~---~~~~~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~-~-~ 461 (474) T protein:vir:94 389 DVKDIEISFNF--NRMMNDAEQSQ---IIAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGA-D-G 461 (474) T ss_pred ccceeeEEecc--CcccCHHHHHH---HHHHcCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCC-C-C Confidence 12334555543 23345555444 45667999999888888652211 111000 0011111111000 0 0 Q ss_pred cCCCCCCCCCCCC Q lcl|Aclame:pro 366 RKDVTSTDETNNQ 378 (378) Q Consensus 366 ~~~~~~~~e~~~e 378 (378) ..+.+..++..+| T Consensus 462 ~~~~~~~~~~~~e 474 (474) T protein:vir:94 462 AQQQEGSNNKESE 474 (474) T ss_pred cccCCCCcccccC Confidence 1111111112222 No 167 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=93.50 E-value=0.0073 Score=32.29 Aligned_cols=341 Identities=9% Similarity=-0.018 Sum_probs=127.1 Q ss_pred CCccccccccccccccCCccceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEV 79 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (378) +.=..+...+-.|.-.-...+...-.. ........+..-+|+.+++.+--..|. .... ...+..+.++ T Consensus 29 ~~r~~~l~~YY~G~~~i~~~~~~~~~~~~~~~~v~n~~~~iVd~~~~~l~~~g~~---~~~~--------~~~~~~~~~i 97 (486) T protein:vir:42 29 SKDLASNTSYYDAERRPEAIGVTVPREMQQLLAHVGYPRLYVDSVAERQAVEGFR---LGDA--------DEADEELWQW 97 (486) T ss_pred HHHHHHHHHHhcccCcchhcccccchhHhhhhhccchHHHHHHHHHhhhccccee---cCCC--------chhHHHHHHH Confidence 000000000000000000000000000 000001224455666666655333332 1111 1123346666 Q ss_pred HhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCC-----------------------------CceEEEE---eec- Q lcl|Aclame:pro 80 LNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDN-----------------------------TGELLDL---LFA- 126 (378) Q Consensus 80 L~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~-----------------------------~g~~~~~---~~~- 126 (378) +. -|.. ......+..+++.+|.||+++. .+. .+++... +.. T Consensus 98 ~~--~N~~---d~~~~~~~~~a~~~G~ay~~v~-~~e~~~~~~~~~~~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~ 171 (486) T protein:vir:42 98 WQ--ANNL---DIEAPLGYTDAYVHGRSFITIS-KPDPQLDLGWDQNVPIIRVEPPTRMHAEIDPRINRVSKAIRVAYDK 171 (486) T ss_pred HH--hcCh---hHHHHHHHHHHhhcCceEEEEe-cCCcccccccCCCeeEEEEecccceEEEEeCCCCCeEEEEEEEEec Confidence 64 2432 3455678889999999997653 221 1111110 000 Q ss_pred -CCeE----EEeeeEE-------------------------EEEccccC--Cccccch----HHHHHHHHHHH----Hh- Q lcl|Aclame:pro 127 -DDKK----EYKPEEL-------------------------VRLTSPFY--INEDTSI----LDNALASIQTK----LE- 165 (378) Q Consensus 127 -~~~~----~~~~~dv-------------------------ih~r~~~~--~~~~~~~----~~~~~~~i~~~----~~- 165 (378) ++.+ .|.++.+ ++|+|... ...|.|- +..+.+++... .+ T Consensus 172 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~ 251 (486) T protein:vir:42 172 EGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQAT 251 (486) T ss_pred CCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccccCCCCCcccchhhHHHHHHHHHHHHHHHHHH Confidence 1111 1222222 33332111 1113332 22223333221 11 Q ss_pred ---cCCcceeeeeCCcCCHHHH--HHHHHHHHHHHHHhhccccccceeEec-CCceeeecccchhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 166 ---QGKLRGLLKINAFLDIDNT--QEYREKALTTIKNMQEGSSYNGLTPVD-NKTEIVELKKDYSVLNKDEIDLIKSELL 239 (378) Q Consensus 166 ---~~~~~gil~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~~~~~~~~~~~~~~~~~~Ia 239 (378) .+.|.-++. ...+..... ......|+. ..++++.++ ++.+|.++.....+.-.+.++....+++ T Consensus 252 ~e~~a~p~~~i~-G~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~q~~~~~~e~~~~~l~~~i~~~s 321 (486) T protein:vir:42 252 AELMGVPQRLIF-GIKPEEIGVDSETGQTLFDA---------YLARILAFEDAEGKIQQFSAAELANFTNALDQIAKQVA 321 (486) T ss_pred HHhhcchHHHhh-cCCccccccccccccchhhh---------hhchhcccCCCCceEEeecccCHHHHHHHHHHHHHHHh Confidence 122221221 111111000 011111211 123455553 5567766654332222344566667788 Q ss_pred HHhCCCHHHhcccc----hHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEe Q lcl|Aclame:pro 240 TGYFMNENILLGTA----SQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIV 301 (378) Q Consensus 240 ~~fgVPp~~l~~~~----~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~ 301 (378) ..=++|++.+++.. +... ....+...|.-+++.+....+..-.+ .....+++.| T Consensus 322 ~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~--------~d~~~i~v~w 393 (486) T protein:vir:42 322 AYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMKGGDVP--------PDMLRMETVW 393 (486) T ss_pred cccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--------ccceeeeEEe Confidence 88889999887642 2111 11233344444444332222211000 1112334444 Q ss_pred cchhhhhcCHHHHHHHHHHHHhC--CCCCHHHHHHHhCCCCCC--CCCeee-----ecccc-eecccchhccCccCCCCC Q lcl|Aclame:pro 302 DNQLFKFATLKELIDLYHENING--PIFTQNQLLVKMGEQPIE--GGDVYI-----ANLNA-VAVKNLSDLQGSRKDVTS 371 (378) Q Consensus 302 d~~~l~~~d~~~~~~~~~~~~~~--G~~t~NE~R~~~gl~p~~--gGD~~~-----~~~n~-~~~~~~~~~~~~~~~~~~ 371 (378) ......+..+.++++.+++++ |+++..-+++.+|+.+-+ ....+. .+... -.+.......+++..... T Consensus 394 --~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (486) T protein:vir:42 394 --RDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTA 471 (486) T ss_pred --cCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC Confidence 445667888899999999886 788888888888885432 111100 00000 000000111111111111 Q ss_pred CCCCCCC Q lcl|Aclame:pro 372 TDETNNQ 378 (378) Q Consensus 372 ~~e~~~e 378 (378) ++.++.+ T Consensus 472 ~~~~~~~ 478 (486) T protein:vir:42 472 PPKPQPA 478 (486) T ss_pred CCCCCcc Confidence 1111111 No 168 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=93.20 E-value=0.0084 Score=31.96 Aligned_cols=323 Identities=13% Similarity=0.067 Sum_probs=129.8 Q ss_pred CCccccc-ccc-------------ccccccCCccce----eeccc-------chhhhhhHHHHHHHHHHHhhhccCceEE Q lcl|Aclame:pro 1 MNLFGKV-VSF-------------SRGKLNNDTQRV----TAWQN-------EAVEYTSAFVTNIHNKIANEITKVEFNH 55 (378) Q Consensus 1 M~~f~~~-~~~-------------~~~~~~~~~~~~----~~~~~-------~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 55 (378) +.+..+. ..+ ...++.+.-.-. ..+.. .......++...+|+..+.-+-.-|+.+ T Consensus 22 ~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 101 (472) T protein:vir:93 22 PETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 101 (472) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhccccccccccccccccchHHHHHHHHhhhhcccCeee Confidence 0000000 000 000111100000 00000 0011223556677888887776667654 Q ss_pred EEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eee-------c Q lcl|Aclame:pro 56 VKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLF-------A 126 (378) Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~-------~ 126 (378) - ..+ + .....|..++. |. .......+....+.+|.||+++. .+..|++.- +-| + T Consensus 102 ~---~~d----~---~~~~~l~~~~~---n~---~~~~~~~~~~~~~~~G~~~~~v~-~d~d~~~~i~~~~p~~~~~i~d 164 (472) T protein:vir:93 102 K---HTD----D---EVVKRIDEVLG---NR---FDDKLHSVLTGASNKGIEWLHPY-LDEEGEFKLFRVPAEQGIPIWT 164 (472) T ss_pred c---cCC----h---HHHHHHHHHHh---cc---HHHHHHHHHHHHhhcCeEEEEEE-ECCCCceEEEEEcccceEEEEc Confidence 1 110 0 11223444442 21 23444557788999999998764 455554421 111 0 Q ss_pred C------------------CeE-EEeeeEE-----------------------------------EEEccccCCccccch Q lcl|Aclame:pro 127 D------------------DKK-EYKPEEL-----------------------------------VRLTSPFYINEDTSI 152 (378) Q Consensus 127 ~------------------~~~-~~~~~dv-----------------------------------ih~r~~~~~~~~~~~ 152 (378) + ..+ .|....+ ++|++. ..|.|. T Consensus 165 ~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn---~~g~s~ 241 (472) T protein:vir:93 165 DKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN---DLEISD 241 (472) T ss_pred CCCCCceEEEEEEEEeecceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCC---CCCCCc Confidence 0 000 1111222 222221 113333 Q ss_pred HH---HHHHHHHHHH--------hcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeeccc Q lcl|Aclame:pro 153 LD---NALASIQTKL--------EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKK 221 (378) Q Consensus 153 ~~---~~~~~i~~~~--------~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~ 221 (378) ++ .+.++++..+ ..+.+..++.- .. .+... .+.+.++ ..+++.++.+.+.+.+.. T Consensus 242 ~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~g-~~--~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~l~~ 307 (472) T protein:vir:93 242 IFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTN-YD--DQELP----EFKRLLR-------YYGAIKVSDNGGVDTIQV 307 (472) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCceeEeec-CC--cccch----hhHHHHh-------hccccccCCCCcceeEee Confidence 33 3333333211 12333333322 11 11111 1222221 123444555545444433 Q ss_pred chhhhh-HHHHHHHHHHHHHHhCCCHHH---hcccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCC Q lcl|Aclame:pro 222 DYSVLN-KDEIDLIKSELLTGYFMNENI---LLGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLIS 283 (378) Q Consensus 222 ~~~~~~-~~~~~~~~~~Ia~~fgVPp~~---l~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~ 283 (378) ...... ...++.+++.|+..-++|..- ++|+.+... ....+...|.-+++.|...++.+ T Consensus 308 ~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~--- 384 (472) T protein:vir:93 308 EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK--- 384 (472) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--- Confidence 322222 344677788999998888543 333333221 12344555555555555544321 Q ss_pred hhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC--CCCeee-----ecccceec Q lcl|Aclame:pro 284 TNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE--GGDVYI-----ANLNAVAV 356 (378) Q Consensus 284 ~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~--gGD~~~-----~~~n~~~~ 356 (378) .....+++.| ....-.|..+.++++.++ .|+++.--+.+++++-+-+ .-+.+. ......+. T Consensus 385 --------~~~~~i~v~f--~~~~p~~~~~~~~~~~k~--~giis~et~l~~l~~~~d~~~E~~ri~~E~~~~~~~~~~~ 452 (472) T protein:vir:93 385 --------GEHKDVDISF--NYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNL 452 (472) T ss_pred --------cccceeeEEe--CCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccCc Confidence 1122344555 445667889999998887 4889988888877653211 111100 00111111 Q ss_pred ccchhccCccCC-CCCC---CCCCCC Q lcl|Aclame:pro 357 KNLSDLQGSRKD-VTST---DETNNQ 378 (378) Q Consensus 357 ~~~~~~~~~~~~-~~~~---~e~~~e 378 (378) .++..+ .+++ ++..+| T Consensus 453 ------~~~~~d~~~~~~~~~~~~~e 472 (472) T protein:vir:93 453 ------DDGGADGAQQQERSNNKESE 472 (472) T ss_pred ------CcccCCCCCCCCCCCcccCC Confidence 111111 1111 111111 No 169 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=93.06 E-value=0.0089 Score=31.81 Aligned_cols=338 Identities=9% Similarity=-0.032 Sum_probs=127.6 Q ss_pred CCccccccc------cccccccCCccce---eecccc---hhh--hhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGKVVS------FSRGKLNNDTQRV---TAWQNE---AVE--YTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~~~~------~~~~~~~~~~~~~---~~~~~~---~~~--~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) =.++.+... ....++.+...-. ...... .+. ....+...+|+.+++.+--.. |... +. T Consensus 20 ~~l~~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~iVd~~~~~l~~~g---f~~~--d~--- 91 (479) T protein:vir:99 20 TKVFPKMNTECERLDDFEAWTKNGQEVPDLATRHKNKEREVLQQLSRKPWMGLMVNSFAQQLIVDG---YRKT--GT--- 91 (479) T ss_pred HHHHHHHHHHhHHHHHHHHHHhcCCcccccccccCChhHHHHHHHhhcCcHHHHHHHHHhhccccc---ccCC--Cc--- Confidence 001110000 0001111110000 000000 000 012344556666665442112 2211 10 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE----eCCCceEEE----------Eeec------ Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVF----DDNTGELLD----------LLFA------ 126 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~----~~~~g~~~~----------~~~~------ 126 (378) ..+..+.++++. |.. -.....+..+++.+|.||+++.. .+..|.+.- +|-+ T Consensus 92 ----~~~~~~~~i~~~--N~~---d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~~i~~~~p~~~~~iydd~~~~~~ 162 (479) T protein:vir:99 92 ----NENAKGWDTWRL--NQM---DKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVARIKCIDPRDAFAIWEDPYWDEW 162 (479) T ss_pred ----hhhHHHHHHHHh--cCh---hHHHHHHHHHHhhcCceEEEEecCCCCcCCCCceEEEEechhheEEEecCCcccce Confidence 123456677653 432 24556678889999999987531 133333221 1100 Q ss_pred ---------CCeE-EEeee-------------------------EEEEEccccC-CccccchHHHHH---HH----HHHH Q lcl|Aclame:pro 127 ---------DDKK-EYKPE-------------------------ELVRLTSPFY-INEDTSILDNAL---AS----IQTK 163 (378) Q Consensus 127 ---------~~~~-~~~~~-------------------------dvih~r~~~~-~~~~~~~~~~~~---~~----i~~~ 163 (378) .+.+ .|... =|+||+|... ...|.|.+.... ++ +... T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~g~sd~e~v~~liDa~~~~~s~~ 242 (479) T protein:vir:99 163 PKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDLRGVCYGDVEPLVTVAKAIDKTGLDI 242 (479) T ss_pred eeEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCcCcCCcchhHHHHHHHHHHHHHHHHH Confidence 0000 01111 1344543211 112444333222 22 2221 Q ss_pred Hh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeE-ecCCceeeecccchhhhhHHHHHHHHHHH Q lcl|Aclame:pro 164 LE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTP-VDNKTEIVELKKDYSVLNKDEIDLIKSEL 238 (378) Q Consensus 164 ~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~~~~l~~~~~~~~~~~~~~~~~~I 238 (378) .+ .+.|.-++.- ..+.++... ....+.- ..++++. -+.+.++.+++........+.++.+..+| T Consensus 243 ~~~~~~~a~p~~~i~G-~~~~~~~~~-~~~~~~~---------~~~~i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~i 311 (479) T protein:vir:99 243 LLVQHHQSFQIRWATG-LMLPEGANA-DQEKMRF---------AQESMLISQNEKASFGAIPAAPLDGLLNAYKESLLEF 311 (479) T ss_pred HHHHHHhhchhhhhcC-CCccccccc-chhcccc---------ccccceeecCCCceEEEecccchHHHHHHHHHHHHHH Confidence 11 1222222211 111111100 0011111 1123333 45667777765322122234456667788 Q ss_pred HHHhCCCHHHhcc--cchHHHH--------------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEec Q lcl|Aclame:pro 239 LTGYFMNENILLG--TASQEQQ--------------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVD 302 (378) Q Consensus 239 a~~fgVPp~~l~~--~~~e~~~--------------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d 302 (378) +.+=++|++.++. +.+.... ...+...|.-+++.+....+... ....+.+++.| T Consensus 312 ~~~t~~p~~~~g~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~---------~~~~~~i~~~w- 381 (479) T protein:vir:99 312 LALAQLPPHIAGQIVNVAADALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTE---------EATDLDFTITW- 381 (479) T ss_pred hccCCCCHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---------cccceeeeEEe- Confidence 8888999998862 2221111 12233334444443322211100 01112233333 Q ss_pred chhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHh-CCCCCCCCCeee-----------ecccceecccchhccCccCCCC Q lcl|Aclame:pro 303 NQLFKFATLKELIDLYHENINGPIFTQNQLLVKM-GEQPIEGGDVYI-----------ANLNAVAVKNLSDLQGSRKDVT 370 (378) Q Consensus 303 ~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~-gl~p~~gGD~~~-----------~~~n~~~~~~~~~~~~~~~~~~ 370 (378) ......+..+.++++.+++++|+++.-.+.+++ |+++-. -+... ....+.......+++++..+.. T Consensus 382 -~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~l~gv~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (479) T protein:vir:99 382 -QDVTIQSLAQFADAWAKMVESLKIPAEGVWDMIPNLDQST-VNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGAT 459 (479) T ss_pred -cCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCC Confidence 344556888999999999999999998888776 776421 00000 0000000001111111111111 Q ss_pred CCCCCCC---C Q lcl|Aclame:pro 371 STDETNN---Q 378 (378) Q Consensus 371 ~~~e~~~---e 378 (378) +..+..+ + T Consensus 460 ~~~~~~~~~~~ 470 (479) T protein:vir:99 460 NMQQANNKTGE 470 (479) T ss_pred CCCCCCCCCcc Confidence 1112111 1 No 170 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=93.00 E-value=0.0092 Score=31.76 Aligned_cols=356 Identities=14% Similarity=0.126 Sum_probs=140.5 Q ss_pred CCcccccccc-----ccc--cc--cCCcc--------cee--eccc--------chhhhhhHHHHHHHHHHHhhhccC-- Q lcl|Aclame:pro 1 MNLFGKVVSF-----SRG--KL--NNDTQ--------RVT--AWQN--------EAVEYTSAFVTNIHNKIANEITKV-- 51 (378) Q Consensus 1 M~~f~~~~~~-----~~~--~~--~~~~~--------~~~--~~~~--------~~~~~~~~~v~~~i~~ia~~ia~~-- 51 (378) =.|.+++.+| ..| .. +.... ++. ..++ ...++.+|.|.+||+.|++.+.-. T Consensus 17 ~~~~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEVd~AideIvneaiv~d~ 96 (533) T protein:vir:58 17 TNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE 96 (533) T ss_pred HHhhchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcchhhHHHhhhceeeEecC Confidence 1111111111 111 00 10000 000 0011 122345688999999999887432 Q ss_pred ---ceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEee--- Q lcl|Aclame:pro 52 ---EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLF--- 125 (378) Q Consensus 52 ---p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~--- 125 (378) |+.+--.. ... .......+.+||+ ...--+.++..|++.|..|..++..+..+-+.++.+ T Consensus 97 ~~~pV~v~l~~---~e~---s~~iK~kI~~lld--------f~~~~~~~fR~WYVDGriy~Hkiik~~k~GI~elr~lDP 162 (533) T protein:vir:58 97 NGNIVDVVTKD---IEL---AKAILSYLDYVIN--------IEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSP 162 (533) T ss_pred CCceeEeeccc---ccc---cHHHHHHHHHHhc--------chhhhhHHHHhhhhcceeEEEeccCCcccchhhheecCC Confidence 22221110 000 0111122333332 222334567789999999987754322222222111 Q ss_pred ------------------c---------CCeEEEeeeEEEEEccc---cCCccccchHHHHHHHHHH------HH----h Q lcl|Aclame:pro 126 ------------------A---------DDKKEYKPEELVRLTSP---FYINEDTSILDNALASIQT------KL----E 165 (378) Q Consensus 126 ------------------~---------~~~~~~~~~dvih~r~~---~~~~~~~~~~~~~~~~i~~------~~----~ 165 (378) + +..+.++.+.|+|+-.. .....++|-+..|.+.++. ++ - T Consensus 163 r~i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmiEDAlVIYRi 242 (533) T protein:vir:58 163 YIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRV 242 (533) T ss_pred eeeEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHHHHHHHHHhh Confidence 1 12345677888888643 2233455666666443322 11 1 Q ss_pred cCCc-ceeeeeC-CcCCHHHHHHHHHHHHHHHHHhhcccc-ccce------e----Ee----------cCCceeeecccc Q lcl|Aclame:pro 166 QGKL-RGLLKIN-AFLDIDNTQEYREKALTTIKNMQEGSS-YNGL------T----PV----------DNKTEIVELKKD 222 (378) Q Consensus 166 ~~~~-~gil~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~----~l----------~~g~~~~~l~~~ 222 (378) .-.| +-|+..+ +.|.+..+.+....+..+++...-=+. .|.+ + .+ +.|.+++.|.-. T Consensus 243 sRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TLpGg 322 (533) T protein:vir:58 243 VRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGS 322 (533) T ss_pred cCChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCccceeeecCCC Confidence 1111 2233332 333333333333333333332211111 1111 0 11 235666767532 Q ss_pred hhhhhHHHHHHHHHHHHHHhCCCHHHhc-----ccchHHHH--HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccc Q lcl|Aclame:pro 223 YSVLNKDEIDLIKSELLTGYFMNENILL-----GTASQEQQ--IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLY 295 (378) Q Consensus 223 ~~~~~~~~~~~~~~~Ia~~fgVPp~~l~-----~~~~e~~~--~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~ 295 (378) +--+++..++..+.+.++++||.+.+. |..+|-.+ ..| ...|.-+-..+.+.|..+|+.+.... .. T Consensus 323 -~lgemeDV~YF~kkLy~ALnVP~sRl~~e~~fgr~~eItRDEiKF-~KFI~rLR~rF~~ll~~qLilk~iit-----~e 395 (533) T protein:vir:58 323 -KVDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKF-NNTIKRIQGFFVEELERMVRMNKEFA-----DQ 395 (533) T ss_pred -CCCcHHHHHHHHHHHHHHhCCCeeecCCCCCCccchhhhHHHHHH-HHHHHHHHHHHHHHHhcccccccCcc-----hh Confidence 322467788999999999999998885 22334322 224 33467777778888888886543221 11 Q ss_pred eeeEEecchhhh----hc-CHHHHHHHHHHH---HhC-----CC--CCHHHHH------HHhCCCCC---CCCCeeeecc Q lcl|Aclame:pro 296 YERIIVDNQLFK----FA-TLKELIDLYHEN---ING-----PI--FTQNQLL------VKMGEQPI---EGGDVYIANL 351 (378) Q Consensus 296 ~~~~~~d~~~l~----~~-d~~~~~~~~~~~---~~~-----G~--~t~NE~R------~~~gl~p~---~gGD~~~~~~ 351 (378) .++++|..+.-. .. =+..|+.++..+ ++. -+ +| +|+. +..+-.|+ |+-+.=+.|. T Consensus 396 ew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~t-dei~~q~e~ie~E~~~~~~~~~~~~~e~~~~ 474 (533) T protein:vir:58 396 DFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIP-YDLKPQEEVAEAAGGGGLFDTGGFGEETTPA 474 (533) T ss_pred heeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCC-hhhhHHHHHHHHhhcCCCCCCCCcccccCCc Confidence 223444322111 00 011233322221 110 01 23 2322 22222222 2111111222 Q ss_pred cce-----ecccchhcc----CccCCCCCC----------------CCCCCC Q lcl|Aclame:pro 352 NAV-----AVKNLSDLQ----GSRKDVTST----------------DETNNQ 378 (378) Q Consensus 352 n~~-----~~~~~~~~~----~~~~~~~~~----------------~e~~~e 378 (378) -+- |++...... +..-....+ +..+.| T Consensus 475 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~~~ 526 (533) T protein:vir:58 475 DFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEE 526 (533) T ss_pred ccCccccCcccCCCChhhHhcccCCcccccccccccccchhhhhhcCCcccC Confidence 111 222110000 000000000 011111 No 171 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=92.62 E-value=0.011 Score=31.40 Aligned_cols=343 Identities=10% Similarity=-0.010 Sum_probs=128.4 Q ss_pred CCccccccccccccccCCccceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEV 79 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~l 79 (378) +.=+.+...+-.|.-.-.......-.. ........+...+|+..++.+--..| +...+ ...+..+.++ T Consensus 29 ~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~---~~~~~--------~~~~~~~~~i 97 (485) T protein:vir:10 29 TQNLKTNTSYYEAERRPEAIGVTVPIQMQSLLAHVGYPRLYVDSIAERQAVEGF---RFGDA--------DEADEELWQW 97 (485) T ss_pred HHHHHHHHHHHhcCCcchhcCCCCChhhhhhhhhcCcHHHHHHHHHhhhcccce---ecCCC--------chhHHHHHHH Confidence 000000000111100000000000000 00001112345566666655522222 22111 0123445666 Q ss_pred HhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCc--------e--EEEEee------------------------ Q lcl|Aclame:pro 80 LNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTG--------E--LLDLLF------------------------ 125 (378) Q Consensus 80 L~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g--------~--~~~~~~------------------------ 125 (378) ++. | ....+...+..+++++|.||+++. ++..+ . +..+-| T Consensus 98 ~~~--N---~~d~~~~~~~~~a~i~G~ay~~v~-~~e~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~~~~~~~~~ 171 (485) T protein:vir:10 98 WQA--N---NLDIEAPLGYTDAYVHGRSYITIS-RPDPQIDLGWDPNTPIIRVEPPTRMYAEIDPRIGRVSKAIRVAYDA 171 (485) T ss_pred HHh--c---CHhHHHHHHHHHHhhcCceEEEEe-eCCcccccccCCCeeEEEEEccceeEEEEcCCCCceeEEEEEEEee Confidence 642 2 234566788899999999998753 33211 1 111111 Q ss_pred cCCeE----EEeeeEEEE-------------------------Ecccc--CCccccchH----HHHHHHHHHH----Hh- Q lcl|Aclame:pro 126 ADDKK----EYKPEELVR-------------------------LTSPF--YINEDTSIL----DNALASIQTK----LE- 165 (378) Q Consensus 126 ~~~~~----~~~~~dvih-------------------------~r~~~--~~~~~~~~~----~~~~~~i~~~----~~- 165 (378) .++.+ .|..+.+++ |.|.. ....|.|-+ ..+.++++.. .+ T Consensus 172 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~ 251 (485) T protein:vir:10 172 EGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQAT 251 (485) T ss_pred CCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEeccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHH Confidence 01111 122333333 33210 011133322 2222333221 11 Q ss_pred ---cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEec-CCceeeecccchhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 166 ---QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVD-NKTEIVELKKDYSVLNKDEIDLIKSELLTG 241 (378) Q Consensus 166 ---~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~ 241 (378) .+.|.-++. ...+.+..... +.-...++. ..+.++.++ .+.++.++....-....+.++....+|+.+ T Consensus 252 ~~~~a~p~~~i~-G~~~~~~~~~~--~~~~~~~~~-----~~~~i~~~~~~d~k~~q~~~~~~~~~~~~l~~~i~~~~~~ 323 (485) T protein:vir:10 252 AELMGVPQRLIF-GIKPEEIGVDP--ETGQTLFDA-----YLARILAFEDAEGKIQQFSAAELANFTNALDQIAKQVAAY 323 (485) T ss_pred HHhhcchHHHHh-cCCcccccccc--cccchhhhh-----cccceeccCCCCceEEeecccchHHHHHHHHHHHHHHhcc Confidence 122211221 11111100000 000011111 123455554 567777775443222234456667788888 Q ss_pred hCCCHHHhcccc----hHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecc Q lcl|Aclame:pro 242 YFMNENILLGTA----SQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDN 303 (378) Q Consensus 242 fgVPp~~l~~~~----~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~ 303 (378) =++|++.+++.. +... ....+...|..+++.+....+.. + .......+++ .+ T Consensus 324 ~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l~~~~~~~~-----~---~~~~~~~i~v--~w 393 (485) T protein:vir:10 324 TGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNSIFGGAWEEAMRLAYRMMKGG-----D---VPPDMLRMET--VW 393 (485) T ss_pred cCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----C---CcccceeeeE--Ee Confidence 889999987542 2111 11223333433333332211100 0 0011123344 44 Q ss_pred hhhhhcCHHHHHHHHHHHHhCC--CCCHHHHHHHhCCCCCC--CCCeeeecc---cceecccchhc--------cCccCC Q lcl|Aclame:pro 304 QLFKFATLKELIDLYHENINGP--IFTQNQLLVKMGEQPIE--GGDVYIANL---NAVAVKNLSDL--------QGSRKD 368 (378) Q Consensus 304 ~~l~~~d~~~~~~~~~~~~~~G--~~t~NE~R~~~gl~p~~--gGD~~~~~~---n~~~~~~~~~~--------~~~~~~ 368 (378) ......+..+.++++.+++.+| +++..-+++.+|+.+-+ ......--. ....++..... +.+++. T Consensus 394 ~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (485) T protein:vir:10 394 RDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLIGTMVDPNPTVPGSPSPAPAP 473 (485) T ss_pred cCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccc Confidence 4566788999999999999866 88999999999887632 111100000 00000000000 000000 Q ss_pred CCCCCCCCCC Q lcl|Aclame:pro 369 VTSTDETNNQ 378 (378) Q Consensus 369 ~~~~~e~~~e 378 (378) +.++.++... T Consensus 474 ~~~~~~~~~~ 483 (485) T protein:vir:10 474 KPAALESGGD 483 (485) T ss_pred cCcCCCCCCC Confidence 0001011111 No 172 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=92.56 E-value=0.011 Score=31.35 Aligned_cols=322 Identities=11% Similarity=0.018 Sum_probs=130.0 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVL 80 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL 80 (378) +|--+-.....+........ ... .......+....+|+..++-+-.-|+.+ .. .+ ......+..++ T Consensus 54 ~g~~~i~~r~~~~~~~~~~~--~~~--~~~ki~~n~~~~Ivd~~~~~l~g~p~~~-~~--~d-------~~~~~~l~~~~ 119 (474) T protein:vir:95 54 DKDNDIVKQMKKVDVYGNID--YDK--PDWRITTNFHQNLVDQKVSYVASKPVTY-SC--ED-------ESVLKIIHDVL 119 (474) T ss_pred cccCchhccccccccccccc--ccc--ccceeccchHHHHHHHHHhhhccCCcee-cc--Cc-------hHHHHHHHHHH Confidence 11110000000000000000 000 0011223445667787777777777654 11 10 11223344444 Q ss_pred hccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--ec-------C---C----------------eEEE Q lcl|Aclame:pro 81 NWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--FA-------D---D----------------KKEY 132 (378) Q Consensus 81 ~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~~-------~---~----------------~~~~ 132 (378) . | ........+....+.+|.||+++. .+..|++.-.+ |. + + ...| T Consensus 120 ~---n---~~~~~~~e~~~~~~~~G~~~~~v~-~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~y 192 (474) T protein:vir:95 120 D---T---RWDNKLIDILTATSNKGIDWLQVY-INENGEMKLFRVPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFW 192 (474) T ss_pred h---c---cHHHHHHHHHHHHhhcCcEEEEEE-ecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEEcCeeEEEEE Confidence 2 2 233445567788999999998753 45555543211 11 0 0 0012 Q ss_pred eeeEEEEEcc-----------------------ccC---------CccccchH---HHHHHHHHH----HHh----cCCc Q lcl|Aclame:pro 133 KPEELVRLTS-----------------------PFY---------INEDTSIL---DNALASIQT----KLE----QGKL 169 (378) Q Consensus 133 ~~~dvih~r~-----------------------~~~---------~~~~~~~~---~~~~~~i~~----~~~----~~~~ 169 (378) ..+.+.+++. +++ ...+.|.+ ..+.++++. ..+ .+.| T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p 272 (474) T protein:vir:95 193 TDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVEL 272 (474) T ss_pred eCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 2233333320 000 01123322 233333332 111 2233 Q ss_pred ceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCHHH Q lcl|Aclame:pro 170 RGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENI 248 (378) Q Consensus 170 ~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~ 248 (378) .-++. .....+. +.+.... ...+++.++++.+.+.+..+...-. ...++.+.+.|+..-++|..- T Consensus 273 ~lv~~-g~~~~~~------~~~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~ 338 (474) T protein:vir:95 273 IYILK-GYEGQDL------EEFMRGL-------KYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQ 338 (474) T ss_pred eeeee-cCCcccc------hhhhhhh-------hccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccc Confidence 22222 2222211 1121211 1234666666666665554322222 345677888999998988532 Q ss_pred ---hcccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCH Q lcl|Aclame:pro 249 ---LLGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) Q Consensus 249 ---l~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~ 311 (378) ++|+.+... ....+...|..+++.|.+.+..+ .....+++.|+. -...|. T Consensus 339 ~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~-----------~d~~~i~v~f~~--~~p~d~ 405 (474) T protein:vir:95 339 TDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNLK-----------MDVKDIEISFNF--NRMMND 405 (474) T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------cccceeeEEecc--CCCcCH Confidence 222222211 12355666666666665554322 122344555543 334555 Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee-----ecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 312 KELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI-----ANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 312 ~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~-----~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ++.+++ +.++|+++...+.+.+++-+-+. -+.+- ......... +.+..+.+..++.+++ T Consensus 406 ~e~a~~---~~~~g~iS~et~i~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~-----~~~~d~~~~~~~~~~~ 471 (474) T protein:vir:95 406 AEQSQI---IAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLD-----DGGADGAQQQERSNDK 471 (474) T ss_pred HHHHHH---HHhcCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccc-----cccCCCCcCCCCCccC Confidence 555554 55679999988888776532111 11000 000000000 1111111111111111 No 173 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=92.56 E-value=0.011 Score=31.35 Aligned_cols=310 Identities=14% Similarity=0.040 Sum_probs=119.7 Q ss_pred CCc------ccccccc------ccccccCC----ccceeecccchhhhh--hHHHHHHHHHHHhhhccCceEEEEecccc Q lcl|Aclame:pro 1 MNL------FGKVVSF------SRGKLNND----TQRVTAWQNEAVEYT--SAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) Q Consensus 1 M~~------f~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~--~~~v~~~i~~ia~~ia~~p~~~~~~~~~~ 62 (378) |-. ..+.... ...++.+. ..+..+-......+. ..+..-+|+.+|+.+-=-- |+ T Consensus 1 m~~~~i~~L~~~~~~~~~r~~~~~~yy~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~G---f~----- 72 (422) T protein:vir:97 1 MNYMGMGYLRRKLALFKTGVDKRYRYYAMDDRDDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFRE---FT----- 72 (422) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhcCccccHHHHHHHHhhcchhHHHHHHHHhccccce---ee----- Confidence 111 0000000 00111111 011111100000011 1233444555554321111 11 Q ss_pred cccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eee-------c------- Q lcl|Aclame:pro 63 VGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLF-------A------- 126 (378) Q Consensus 63 ~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~-------~------- 126 (378) ..+..+.++++. |.. ......+..+.+++|.||+++......|.+.- +-| + T Consensus 73 --------~~d~~l~~~w~~--N~l---d~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i~D~~~~~~~ 139 (422) T protein:vir:97 73 --------NDDFNAWEIFKA--NNP---DIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGILDPTTFLLT 139 (422) T ss_pred --------CCchhHHHHHHh--cCh---HHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEEEeCCCCcce Confidence 123346677652 443 22334667888999999998753223455421 111 0 Q ss_pred ----------CCe----EEEeeeE---------------------EEEEccccCC--ccccc----hHHHHHHHHH---- Q lcl|Aclame:pro 127 ----------DDK----KEYKPEE---------------------LVRLTSPFYI--NEDTS----ILDNALASIQ---- 161 (378) Q Consensus 127 ----------~~~----~~~~~~d---------------------vih~r~~~~~--~~~~~----~~~~~~~~i~---- 161 (378) .+. ..++... |++|.|.... ..|.| ++..+.+++. T Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~ 219 (422) T protein:vir:97 140 EGYAILESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLE 219 (422) T ss_pred eeEEEEEecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHH Confidence 000 1111122 2333221000 01222 2222333322 Q ss_pred HHHh----cCCc-ceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecC-----CceeeecccchhhhhHHHH Q lcl|Aclame:pro 162 TKLE----QGKL-RGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN-----KTEIVELKKDYSVLNKDEI 231 (378) Q Consensus 162 ~~~~----~~~~-~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----g~~~~~l~~~~~~~~~~~~ 231 (378) .... .+.| +.++-. +++. ...+.|+... ++++.++. +.++.+++...-.--.+.+ T Consensus 220 ~~~~~~e~~a~pqr~i~G~----d~d~--~~~~~~~~~~---------~~i~~~~~de~~~~~~v~q~~~~~l~~~~~~l 284 (422) T protein:vir:97 220 RAEVTAEFYSFPQKYVLGM----DPDA--KPMEKWRATV---------STLLEISKDEDGDKPTVGQFTTASMAPFMEHL 284 (422) T ss_pred HHHHHHHHhcchhhhhccc----Cccc--ccCchhhhhh---------hhhhccCCCCCCCcceeeecCCCChhHHHHHH Confidence 2111 2222 222221 1111 1122343322 23444432 3566666543322224556 Q ss_pred HHHHHHHHHHhCCCHHHhcccchH----HHHH--------------HHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccc Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENILLGTASQ----EQQI--------------YFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGN 293 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~l~~~~~e----~~~~--------------~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~ 293 (378) +.+...++.+=++|++.+++...+ .... ..+...+.-.++.+....+. . . ..... T Consensus 285 ~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~-~-~-----~~~~~ 357 (422) T protein:vir:97 285 KMYASLFAGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFSSGFLNVAYIAVCLRDE-F-P-----YLRNQ 357 (422) T ss_pred HHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C-c-----ccchh Confidence 788889999999999999864321 1110 11122222222222111111 0 0 00001 Q ss_pred cceeeEEecchhhhhcC---HHHHHHHHHHHHhC--CCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccC Q lcl|Aclame:pro 294 LYYERIIVDNQLFKFAT---LKELIDLYHENING--PIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQG 364 (378) Q Consensus 294 ~~~~~~~~d~~~l~~~d---~~~~~~~~~~~~~~--G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~ 364 (378) ...+++.|. ...-.| ....++++.|++++ |+++.+-+++++|+.+. |.-... ++.. +.+| T Consensus 358 ~~~~~~~w~--p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~~~~---~~~~~~-----~~~~-~~d~ 422 (422) T protein:vir:97 358 FMDTVIKWE--PLFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLTGVKGA---DKPIPA-----ITEV-TTDG 422 (422) T ss_pred hccceEEEc--cCCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHcCCCch---hHHHHH-----HHhh-hccC Confidence 112334443 333334 45667778888888 78889999999999643 110000 0000 0011 No 174 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=92.45 E-value=0.011 Score=31.25 Aligned_cols=350 Identities=10% Similarity=-0.022 Sum_probs=137.5 Q ss_pred CCcccc--------ccccccccccCCcccee-----eccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGK--------VVSFSRGKLNNDTQRVT-----AWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~--------~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) .++..+ +... .-++.+....+. .... ........+....|+..++-+-.-|+.+--... T Consensus 46 ~~~i~~h~~~~~~rl~~l-~~yY~g~~~~i~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~------ 118 (502) T protein:vir:48 46 KNFINHHKLRQAPRIQEL-LDYARGENHDVLKSGRRKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDN------ 118 (502) T ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCCccccccccccccccccceeecchHHHHHHHHhhhhcccCeeEecCCc------ Confidence 111110 0000 001111000000 0000 001112344566778888888788876532110 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE----------------------- Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL----------------------- 123 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~----------------------- 123 (378) ..+.++...|+ +....-........+...++.+|.||+++ +.+..|.+.-. T Consensus 119 ----~~~~~~~~~l~-~~~~~N~~~~~~~~~~~~~~~~G~a~~~v-~~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~i 192 (502) T protein:vir:48 119 ----EDNSQNDDAIK-RIGRINDIDTHNRNLIRDLSQTGRAYEVI-YRSEYDETRIKRLSPLETFVIYDNSLEDNSIAAV 192 (502) T ss_pred ----cchhHHHHHHH-HHHhhcCHhHHHHHHHHHHhhcCeEEEEE-EeCCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 01233444333 12222244557778889999999999875 34544543211 Q ss_pred --eec---CCe----EEEeeeEEEEEcc------------ccC---------CccccchHH---HHHHHHHH----HHh- Q lcl|Aclame:pro 124 --LFA---DDK----KEYKPEELVRLTS------------PFY---------INEDTSILD---NALASIQT----KLE- 165 (378) Q Consensus 124 --~~~---~~~----~~~~~~dvih~r~------------~~~---------~~~~~~~~~---~~~~~i~~----~~~- 165 (378) |.. .+. ..|.++.++++.. +++ ...+.|.++ .+.++++. ..+ T Consensus 193 r~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~ 272 (502) T protein:vir:48 193 RYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDLYDSAESDTANH 272 (502) T ss_pred EEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 110 000 0123333433321 010 011333332 22222222 111 Q ss_pred ---cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHHHHHHHHHH Q lcl|Aclame:pro 166 ---QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTG 241 (378) Q Consensus 166 ---~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~ 241 (378) .+.+--++.-......+. ....+++. +.... ...+.....+.+.+++.++.....-.. ..++.+.+.|+.. T Consensus 273 ~~~~~~~~lv~~g~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~ 347 (502) T protein:vir:48 273 MSDMADAILAIYGDLALPQGM---QASDMKRT-RLMQL-KPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVF 347 (502) T ss_pred HHHhcCceeeeecCccccccc---chhhhhhc-ceeec-cccccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHH Confidence 122222222211111111 01111110 00000 000000112234455545433222222 3457788899999 Q ss_pred hCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecch Q lcl|Aclame:pro 242 YFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) Q Consensus 242 fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~ 304 (378) -++|+... +|+.+... ....+...|.-.++.+...++..--.. ......+++.| . T Consensus 348 s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~------~~d~~~i~i~f--~ 419 (502) T protein:vir:48 348 TNTPDMSDNHFSGNASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFK------DFDESRLKITF--T 419 (502) T ss_pred hCCCCcCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------ccccccceEEe--C Confidence 99987433 23322211 123555666666666655554321100 01112345555 4 Q ss_pred hhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee---ecccceecccchhcc--CccCCCCCCCCCCC Q lcl|Aclame:pro 305 LFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI---ANLNAVAVKNLSDLQ--GSRKDVTSTDETNN 377 (378) Q Consensus 305 ~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~---~~~n~~~~~~~~~~~--~~~~~~~~~~e~~~ 377 (378) ..+..|.++.++++.++ .|+++..-+.+++++-.-|. -+++. -.....+........ .+.++.+++.+++. T Consensus 420 ~~~p~d~~e~a~~~~kl--~g~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~~ 497 (502) T protein:vir:48 420 PNLPKSLYEQVSILNDL--GGQVSQETALSLSGLVENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKETHTDDF 497 (502) T ss_pred CCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcccccccccccccCCCccCCCCcCc Confidence 55667899999999888 48899988888886532111 11110 000111111111111 11122222333333 Q ss_pred C Q lcl|Aclame:pro 378 Q 378 (378) Q Consensus 378 e 378 (378) | T Consensus 498 ~ 498 (502) T protein:vir:48 498 E 498 (502) T ss_pred C Confidence 3 No 175 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=92.26 E-value=0.012 Score=31.08 Aligned_cols=342 Identities=12% Similarity=0.091 Sum_probs=120.7 Q ss_pred CCccccccccccccc-----cCCc------cceeeccc--ch-----hhhh----------------------hHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL-----NNDT------QRVTAWQN--EA-----VEYT----------------------SAFVTNI 40 (378) Q Consensus 1 M~~f~~~~~~~~~~~-----~~~~------~~~~~~~~--~~-----~~~~----------------------~~~v~~~ 40 (378) ||+|++++.+.+.-. ...- ..+..... .. ..|+ ...-..+ T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~~~l~~~~~~~~~~~~~~~slnl~~~i 80 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDFKQVTHKNSYGDTQKHELQSVNVTKLA 80 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCCccccccccCCCccccceeecchHHHH Confidence 999999887544311 1000 01110000 00 0000 0111222 Q ss_pred HHHHHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceE Q lcl|Aclame:pro 41 HNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGEL 120 (378) Q Consensus 41 i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~ 120 (378) ++.+|+-+..=|..+-- + . ......|.++|.. | ......+..+.+.+..|.+++.+.++++..++ T Consensus 81 ~~~~A~ll~~e~~~i~~---~-----d--~~~~e~l~~i~~~--n---~f~~~~~~~~e~a~a~G~~~~k~~~D~~~~~i 145 (505) T protein:vir:79 81 SAKLASLIFNEQCQVTV---S-----D--ETANDFLDDVFQQ--N---DFYTTFEEKLEEWIALGSGCVRPYVDSGKIKL 145 (505) T ss_pred HHHHHhhhcCCCceeec---C-----C--hHHHHHHHHHHHh--c---cHHHHHHHHHHHHhhcCCeEEEEEEeCCceEE Confidence 33333333222222100 0 0 0111223344321 1 12333345566677778777666554322222 Q ss_pred EEE-----ee---cCCeE-E------Ee----eeEE--------------EEEccccCCc-cc--cchHHHHHHHHHH-- Q lcl|Aclame:pro 121 LDL-----LF---ADDKK-E------YK----PEEL--------------VRLTSPFYIN-ED--TSILDNALASIQT-- 162 (378) Q Consensus 121 ~~~-----~~---~~~~~-~------~~----~~dv--------------ih~r~~~~~~-~~--~~~~~~~~~~i~~-- 162 (378) -.. +| +.+.+ . +. ...+ .+|++.++-. .. ++ ....+..+.. T Consensus 146 ~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG-~~v~l~~~~~~~ 224 (505) T protein:vir:79 146 AWATADQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVG-INVPLNSLEQYE 224 (505) T ss_pred EEEcCCeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccC-cccchhhccccc Confidence 111 11 11110 0 00 0000 0111100000 00 00 0000111100 Q ss_pred -------HHhcCCcce-eeeeC-------------CcCCH-----HHHHHHHHHHHHHHHHhhccccccceeE------- Q lcl|Aclame:pro 163 -------KLEQGKLRG-LLKIN-------------AFLDI-----DNTQEYREKALTTIKNMQEGSSYNGLTP------- 209 (378) Q Consensus 163 -------~~~~~~~~g-il~~~-------------~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 209 (378) +.+-.+|-. ++..+ +.++. ++.++.-.+|...++ .+.. .+.+ T Consensus 225 ~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~---~g~~--~i~v~~~~l~~ 299 (505) T protein:vir:79 225 GLEPQVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVK---KGQR--RLIVPAEWLKT 299 (505) T ss_pred ccCcceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHH---hccc--ceeechHHhcc Confidence 000111111 11111 00000 011111122222221 1100 0111 Q ss_pred ---------------------------e-cCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCHHHhcc------cch Q lcl|Aclame:pro 210 ---------------------------V-DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG------TAS 254 (378) Q Consensus 210 ---------------------------l-~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~~------~~~ 254 (378) . +++..++.++..-.+-+ .+.++.+.++|+...|+++..++- |++ T Consensus 300 ~~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAt 379 (505) T protein:vir:79 300 GSSYGGQASETHPPMFDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQTAT 379 (505) T ss_pred cCCCCcccccccccCCCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccchHH Confidence 0 11122334433222222 345566778899999999998852 222 Q ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHh--hhccccceeeEEecchhhhhcCHHHHHHHHHH Q lcl|Aclame:pro 255 QEQ------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRR--VVKGNLYYERIIVDNQLFKFATLKELIDLYHE 320 (378) Q Consensus 255 e~~------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~--~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~ 320 (378) |.. ....++.+|..+++.|-.-.....+...... .+....+. +.|+++.-...|..+.++...+ T Consensus 380 ei~s~~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~--i~v~f~d~i~~d~~~~~~~~~~ 457 (505) T protein:vir:79 380 EVVTNNSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLD--ITINFNDGVFVDQESKRAADLQ 457 (505) T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCcee--EEEEeCCCCCCCHHHHHHHHHH Confidence 321 1234455565555555443332222111100 11112233 4444455567888889999999 Q ss_pred HHhCCCCCHHHHHHHh-CCCCCCCCCeeeecccceecccchhccCccC--CCCCCCC Q lcl|Aclame:pro 321 NINGPIFTQNQLLVKM-GEQPIEGGDVYIANLNAVAVKNLSDLQGSRK--DVTSTDE 374 (378) Q Consensus 321 ~~~~G~~t~NE~R~~~-gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~--~~~~~~e 374 (378) ++.+|+++.-+++... |++.- .-++ -+.. +.+.+.... ..+-++| T Consensus 458 ~v~~Gi~s~e~~l~~~~~~~ee-ea~~-----el~r---i~~E~~~~~p~~~~~gg~ 505 (505) T protein:vir:79 458 AVQAQVMPKKQFLMRNYGLDEE-EADE-----WLAQ---IDAENSTAEPEFNQFGGD 505 (505) T ss_pred HHHcCCCCHHHHHHhcCCCChH-HHHH-----HHHH---HHHhccccCCCchhccCC Confidence 9999999998887653 44321 1110 0111 111111110 1111122 No 176 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=91.97 E-value=0.013 Score=30.85 Aligned_cols=324 Identities=11% Similarity=0.044 Sum_probs=129.0 Q ss_pred CCccccccccccccc-c-CCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL-N-NDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) Q Consensus 1 M~~f~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) +.++...-.+..... . ....... .. .............|+..++-+-+-|+.+- . .+ ......+.. T Consensus 50 ~~Yy~g~~~i~~~~~~~~~~~~~~~-~~-~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-~--~~-------~~~~~~l~~ 117 (474) T protein:vir:95 50 QKYYDKDNDINYQAYKQDLHGNIDY-TK-PDWRITTNFHQNLVDQKVSYVAGKPVTYA-H--DD-------DKVLDVIHQ 117 (474) T ss_pred HHHhcccCccccccchhhhcccccc-cc-cccccccchHHHHHHhhhhhhcccCceec-c--CC-------hHHHHHHHH Confidence 111110000000000 0 0000000 00 00111234456667878888777787641 1 11 112234444 Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e-------cC----------------C-e-E- Q lcl|Aclame:pro 79 VLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F-------AD----------------D-K-K- 130 (378) Q Consensus 79 lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~-------~~----------------~-~-~- 130 (378) ++. | ........+..+++.+|.||.++ +.+..|.+.-.+ | ++ . + + T Consensus 118 ~~~---n---~~~~~~~~l~~~~~~~G~~~~~~-~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~ 190 (474) T protein:vir:95 118 VLD---T---RWDNKLIDILTAASNKGIDWLQV-YINEDGELKLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVE 190 (474) T ss_pred HHh---c---cHHHHHHHHHHHHhhCCeEEEEe-eeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeEEE Confidence 442 2 23445566788999999999875 455556543211 1 00 0 0 0 Q ss_pred EEeeeEEEEEccc-----------------------c---------CCccccch---HHHHHHHHHH----HHh----cC Q lcl|Aclame:pro 131 EYKPEELVRLTSP-----------------------F---------YINEDTSI---LDNALASIQT----KLE----QG 167 (378) Q Consensus 131 ~~~~~dvih~r~~-----------------------~---------~~~~~~~~---~~~~~~~i~~----~~~----~~ 167 (378) .|.++.|.++... + +...+.|. +..+.++++. ..+ .+ T Consensus 191 vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~ 270 (474) T protein:vir:95 191 YWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESV 270 (474) T ss_pred EEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 1223334333210 0 00112222 2233333322 211 12 Q ss_pred CcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCH Q lcl|Aclame:pro 168 KLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNE 246 (378) Q Consensus 168 ~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp 246 (378) .|-.++ .+. ..+.... +...+ +..+++.++++.+.+.+..+..... ...++.+.+.|+..-++|. T Consensus 271 ~p~lv~--~g~-~~~~~~~----~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 336 (474) T protein:vir:95 271 ELIYIL--RGY-EGEDLSE----FMEGL-------KYYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVD 336 (474) T ss_pred cchhhh--cCC-Ccccccc----hhhhh-------hccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcC Confidence 222222 121 1111111 11111 1234566666655555543332222 2445777888999988885 Q ss_pred HHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhc Q lcl|Aclame:pro 247 NIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFA 309 (378) Q Consensus 247 ~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~ 309 (378) ... +|+.+... ....+...|..+++.|...++.+ .....+++.|. .-... T Consensus 337 ~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~-----------~d~~~i~i~f~--~~~p~ 403 (474) T protein:vir:95 337 FQTDKFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIK-----------LDAKEIEITFN--FNVMV 403 (474) T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------cccceeeEEec--CCCcc Confidence 332 23333211 12344555666665554433221 12234455554 33445 Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee-----ecccceecccchhccCccCCCCCCCCC-CCC Q lcl|Aclame:pro 310 TLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI-----ANLNAVAVKNLSDLQGSRKDVTSTDET-NNQ 378 (378) Q Consensus 310 d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~-----~~~n~~~~~~~~~~~~~~~~~~~~~e~-~~e 378 (378) |..+.++. +.++|+++.-.+++.+++-+-|. .+++- ....+.... .++..+.++.+++ ++| T Consensus 404 ~~~e~a~~---~~~~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~e 472 (474) T protein:vir:95 404 NDLEQSQI---GAQSQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLD-----DGGADGAQQQQQSENNQ 472 (474) T ss_pred CHHHHHHH---HHHcCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccc-----cccCCCCCCcCCCCccc Confidence 66666655 45679999999888886532111 11100 000010000 0111111111221 122 No 177 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=91.97 E-value=0.013 Score=30.85 Aligned_cols=324 Identities=11% Similarity=0.044 Sum_probs=129.0 Q ss_pred CCccccccccccccc-c-CCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL-N-NDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) Q Consensus 1 M~~f~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) +.++...-.+..... . ....... .. .............|+..++-+-+-|+.+- . .+ ......+.. T Consensus 50 ~~Yy~g~~~i~~~~~~~~~~~~~~~-~~-~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-~--~~-------~~~~~~l~~ 117 (474) T protein:vir:96 50 QKYYDKDNDINYQAYKQDLHGNIDY-TK-PDWRITTNFHQNLVDQKVSYVAGKPVTYA-H--DD-------DKVLDVIHQ 117 (474) T ss_pred HHHhcccCccccccchhhhcccccc-cc-cccccccchHHHHHHhhhhhhcccCceec-c--CC-------hHHHHHHHH Confidence 111110000000000 0 0000000 00 00111234456667878888777787641 1 11 112234444 Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e-------cC----------------C-e-E- Q lcl|Aclame:pro 79 VLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F-------AD----------------D-K-K- 130 (378) Q Consensus 79 lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~-------~~----------------~-~-~- 130 (378) ++. | ........+..+++.+|.||.++ +.+..|.+.-.+ | ++ . + + T Consensus 118 ~~~---n---~~~~~~~~l~~~~~~~G~~~~~~-~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~ 190 (474) T protein:vir:96 118 VLD---T---RWDNKLIDILTAASNKGIDWLQV-YINEDGELKLFRVPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVE 190 (474) T ss_pred HHh---c---cHHHHHHHHHHHHhhCCeEEEEe-eeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeecCeeEEE Confidence 442 2 23445566788999999999875 455556543211 1 00 0 0 0 Q ss_pred EEeeeEEEEEccc-----------------------c---------CCccccch---HHHHHHHHHH----HHh----cC Q lcl|Aclame:pro 131 EYKPEELVRLTSP-----------------------F---------YINEDTSI---LDNALASIQT----KLE----QG 167 (378) Q Consensus 131 ~~~~~dvih~r~~-----------------------~---------~~~~~~~~---~~~~~~~i~~----~~~----~~ 167 (378) .|.++.|.++... + +...+.|. +..+.++++. ..+ .+ T Consensus 191 vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~ 270 (474) T protein:vir:96 191 YWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESV 270 (474) T ss_pred EEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 1223334333210 0 00112222 2233333322 211 12 Q ss_pred CcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCH Q lcl|Aclame:pro 168 KLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNE 246 (378) Q Consensus 168 ~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp 246 (378) .|-.++ .+. ..+.... +...+ +..+++.++++.+.+.+..+..... ...++.+.+.|+..-++|. T Consensus 271 ~p~lv~--~g~-~~~~~~~----~~~~~-------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 336 (474) T protein:vir:96 271 ELIYIL--RGY-EGEDLSE----FMEGL-------KYYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVD 336 (474) T ss_pred cchhhh--cCC-Ccccccc----hhhhh-------hccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcC Confidence 222222 121 1111111 11111 1234566666655555543332222 2445777888999988885 Q ss_pred HHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhc Q lcl|Aclame:pro 247 NIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFA 309 (378) Q Consensus 247 ~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~ 309 (378) ... +|+.+... ....+...|..+++.|...++.+ .....+++.|. .-... T Consensus 337 ~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~-----------~d~~~i~i~f~--~~~p~ 403 (474) T protein:vir:96 337 FQTDKFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIK-----------LDAKEIEITFN--FNVMV 403 (474) T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------cccceeeEEec--CCCcc Confidence 332 23333211 12344555666665554433221 12234455554 33445 Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee-----ecccceecccchhccCccCCCCCCCCC-CCC Q lcl|Aclame:pro 310 TLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI-----ANLNAVAVKNLSDLQGSRKDVTSTDET-NNQ 378 (378) Q Consensus 310 d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~-----~~~n~~~~~~~~~~~~~~~~~~~~~e~-~~e 378 (378) |..+.++. +.++|+++.-.+++.+++-+-|. .+++- ....+.... .++..+.++.+++ ++| T Consensus 404 ~~~e~a~~---~~~~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~e 472 (474) T protein:vir:96 404 NDLEQSQI---GAQSQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLD-----DGGADGAQQQQQSENNQ 472 (474) T ss_pred CHHHHHHH---HHHcCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccc-----cccCCCCCCcCCCCccc Confidence 66666655 45679999999888886532111 11100 000010000 0111111111221 122 No 178 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=91.73 E-value=0.014 Score=30.67 Aligned_cols=344 Identities=9% Similarity=-0.075 Sum_probs=136.2 Q ss_pred CCccccccc----------cccccccCCcc----ceeeccc-ch--hhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFGKVVS----------FSRGKLNNDTQ----RVTAWQN-EA--VEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~~~~~----------~~~~~~~~~~~----~~~~~~~-~~--~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) ..+..++.. ....++.+... ....-.. .. -...+.+..-+|+..++.+-.-||.+- .. T Consensus 7 ~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~---~~-- 81 (456) T protein:vir:10 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG---GS-- 81 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecC---CC-- Confidence 011110000 00011111100 0000000 00 012234566778888888777777531 11 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eee---------------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLF---------------- 125 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~---------------- 125 (378) .+. ..+..+.++++. |. .-.+-..+..+++.+|.||+++ +.+..|.+.- +-| T Consensus 82 -~d~---~~~~~~~~i~~~--N~---~d~~~~~~~~~a~i~G~ay~~v-~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~ 151 (456) T protein:vir:10 82 -ADS---DLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTC-WRRDDGTATITADSPETMVVSVDPLQPWRIR 151 (456) T ss_pred -CCc---chHHHHHHHHHh--cC---hhhHHHHHHHHHhhcCeeEEEE-eeCCCCceEEEEEccceeEEEEcCCCCcceE Confidence 011 112335566642 42 2334556788899999999865 4555554321 111 Q ss_pred ---------cCCeE---EEeeeEE-----------------E--------------EEcc-----ccCCccccchHH--- Q lcl|Aclame:pro 126 ---------ADDKK---EYKPEEL-----------------V--------------RLTS-----PFYINEDTSILD--- 154 (378) Q Consensus 126 ---------~~~~~---~~~~~dv-----------------i--------------h~r~-----~~~~~~~~~~~~--- 154 (378) ++... .|..+.+ . |+-. ++....+.|.++ T Consensus 152 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi 231 (456) T protein:vir:10 152 AAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHI 231 (456) T ss_pred EEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhH Confidence 00000 0000000 0 0000 000112333322 Q ss_pred ----HHHHHHHHHHh----cCCcceeee-eCC-c-CCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccch Q lcl|Aclame:pro 155 ----NALASIQTKLE----QGKLRGLLK-INA-F-LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDY 223 (378) Q Consensus 155 ----~~~~~i~~~~~----~~~~~gil~-~~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~ 223 (378) .+-.++...++ .+.+.-++. ... . ..++..... ...+.++. ..+.++.++.+.++.+++... T Consensus 232 ~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~--~~~~~~~~-----~~~~~~~~~~~~~~~q~~~~~ 304 (456) T protein:vir:10 232 DIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI--DYASIFEA-----APGALWELPPGVDIWESQAND 304 (456) T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHhhhccCccccccccccccc--chhhhhhh-----hccccccCCCCcceEEecccC Confidence 22222221111 111111111 100 0 001110000 01111221 124567788899988876432 Q ss_pred hhhhHHHHHHHHHHHHHHhCCCHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHhhcC---ChhHHhhhcccccee Q lcl|Aclame:pro 224 SVLNKDEIDLIKSELLTGYFMNENILLGTA---SQEQQIYFYNSTIIPLLIQLEKELTYKLI---STNRRRVVKGNLYYE 297 (378) Q Consensus 224 ~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~---~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll---~~~~~~~g~~~~~~~ 297 (378) -.--.+.++.+..+|+..=++|++.+++.. +.. ...+....+.-.+...+..|...|- ---....|......+ T Consensus 305 ~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg~-Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~ 383 (456) T protein:vir:10 305 FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAE-GAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTV 383 (456) T ss_pred hhHHHHHHHHHHHHHHhccCCChHHhcccccChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccce Confidence 221234567778889999999999987632 221 1122222222222222222221110 000001122222334 Q ss_pred eEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhc---cCccCCCCCCCC Q lcl|Aclame:pro 298 RIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDL---QGSRKDVTSTDE 374 (378) Q Consensus 298 ~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~---~~~~~~~~~~~e 374 (378) ++.| ......+..+.++++.++++.|+.+..-+++++|+.|-+- -. +..+...++ .+++--..+..+ T Consensus 384 ~v~w--~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i---~~-----~e~er~~~e~~~~~~~~~~~~~~~ 453 (456) T protein:vir:10 384 DVSF--ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQ-----DDLDRAREQITLFAGNPVQRPQED 453 (456) T ss_pred eEEe--cCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHH---HH-----HHHHHHHHHHHHHhhhhhhcCCCC Confidence 4444 4456678899999999999999999988888888875310 00 000111111 000000001111 Q ss_pred CCC Q lcl|Aclame:pro 375 TNN 377 (378) Q Consensus 375 ~~~ 377 (378) +.- T Consensus 454 ~~~ 456 (456) T protein:vir:10 454 GSR 456 (456) T ss_pred CCC Confidence 111 No 179 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=91.73 E-value=0.014 Score=30.67 Aligned_cols=344 Identities=9% Similarity=-0.075 Sum_probs=136.2 Q ss_pred CCccccccc----------cccccccCCcc----ceeeccc-ch--hhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFGKVVS----------FSRGKLNNDTQ----RVTAWQN-EA--VEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~~~~~----------~~~~~~~~~~~----~~~~~~~-~~--~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) ..+..++.. ....++.+... ....-.. .. -...+.+..-+|+..++.+-.-||.+- .. T Consensus 7 ~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~---~~-- 81 (456) T protein:vir:10 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG---GS-- 81 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecC---CC-- Confidence 011110000 00011111100 0000000 00 012234566778888888777777531 11 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eee---------------- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLF---------------- 125 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~---------------- 125 (378) .+. ..+..+.++++. |. .-.+-..+..+++.+|.||+++ +.+..|.+.- +-| T Consensus 82 -~d~---~~~~~~~~i~~~--N~---~d~~~~~~~~~a~i~G~ay~~v-~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~ 151 (456) T protein:vir:10 82 -ADS---DLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTC-WRRDDGTATITADSPETMVVSVDPLQPWRIR 151 (456) T ss_pred -CCc---chHHHHHHHHHh--cC---hhhHHHHHHHHHhhcCeeEEEE-eeCCCCceEEEEEccceeEEEEcCCCCcceE Confidence 011 112335566642 42 2334556788899999999865 4555554321 111 Q ss_pred ---------cCCeE---EEeeeEE-----------------E--------------EEcc-----ccCCccccchHH--- Q lcl|Aclame:pro 126 ---------ADDKK---EYKPEEL-----------------V--------------RLTS-----PFYINEDTSILD--- 154 (378) Q Consensus 126 ---------~~~~~---~~~~~dv-----------------i--------------h~r~-----~~~~~~~~~~~~--- 154 (378) ++... .|..+.+ . |+-. ++....+.|.++ T Consensus 152 ~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi 231 (456) T protein:vir:10 152 AAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHI 231 (456) T ss_pred EEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhH Confidence 00000 0000000 0 0000 000112333322 Q ss_pred ----HHHHHHHHHHh----cCCcceeee-eCC-c-CCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccch Q lcl|Aclame:pro 155 ----NALASIQTKLE----QGKLRGLLK-INA-F-LDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDY 223 (378) Q Consensus 155 ----~~~~~i~~~~~----~~~~~gil~-~~~-~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~ 223 (378) .+-.++...++ .+.+.-++. ... . ..++..... ...+.++. ..+.++.++.+.++.+++... T Consensus 232 ~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~--~~~~~~~~-----~~~~~~~~~~~~~~~q~~~~~ 304 (456) T protein:vir:10 232 DIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI--DYASIFEA-----APGALWELPPGVDIWESQAND 304 (456) T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHhhhccCccccccccccccc--chhhhhhh-----hccccccCCCCcceEEecccC Confidence 22222221111 111111111 100 0 001110000 01111221 124567788899988876432 Q ss_pred hhhhHHHHHHHHHHHHHHhCCCHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHhhcC---ChhHHhhhcccccee Q lcl|Aclame:pro 224 SVLNKDEIDLIKSELLTGYFMNENILLGTA---SQEQQIYFYNSTIIPLLIQLEKELTYKLI---STNRRRVVKGNLYYE 297 (378) Q Consensus 224 ~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~---~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll---~~~~~~~g~~~~~~~ 297 (378) -.--.+.++.+..+|+..=++|++.+++.. +.. ...+....+.-.+...+..|...|- ---....|......+ T Consensus 305 ~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg~-Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~ 383 (456) T protein:vir:10 305 FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAE-GAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTV 383 (456) T ss_pred hhHHHHHHHHHHHHHHhccCCChHHhcccccChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccce Confidence 221234567778889999999999987632 221 1122222222222222222221110 000001122222334 Q ss_pred eEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhc---cCccCCCCCCCC Q lcl|Aclame:pro 298 RIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDL---QGSRKDVTSTDE 374 (378) Q Consensus 298 ~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~---~~~~~~~~~~~e 374 (378) ++.| ......+..+.++++.++++.|+.+..-+++++|+.|-+- -. +..+...++ .+++--..+..+ T Consensus 384 ~v~w--~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i---~~-----~e~er~~~e~~~~~~~~~~~~~~~ 453 (456) T protein:vir:10 384 DVSF--ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQ-----DDLDRAREQITLFAGNPVQRPQED 453 (456) T ss_pred eEEe--cCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHH---HH-----HHHHHHHHHHHHHhhhhhhcCCCC Confidence 4444 4456678899999999999999999988888888875310 00 000111111 000000001111 Q ss_pred CCC Q lcl|Aclame:pro 375 TNN 377 (378) Q Consensus 375 ~~~ 377 (378) +.- T Consensus 454 ~~~ 456 (456) T protein:vir:10 454 GSR 456 (456) T ss_pred CCC Confidence 111 No 180 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=90.70 E-value=0.019 Score=29.96 Aligned_cols=345 Identities=9% Similarity=-0.054 Sum_probs=133.1 Q ss_pred CCcc---ccccc---------c--ccccccCCccce-----eeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEecc Q lcl|Aclame:pro 1 MNLF---GKVVS---------F--SRGKLNNDTQRV-----TAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKK 60 (378) Q Consensus 1 M~~f---~~~~~---------~--~~~~~~~~~~~~-----~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~ 60 (378) +..+ .+.+. + ...++.+....+ ..... .......++...+|+..++-+-.-|+.+--... T Consensus 38 ~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~~i~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~~~ 117 (501) T protein:vir:96 38 VNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSGRRKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDN 117 (501) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCccccCccccccceeecchHHHHHHHHhhhhcccCeeEeeCCc Confidence 1111 11000 0 000111110000 00000 001123445566778888777777776522111 Q ss_pred cccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE----------------- Q lcl|Aclame:pro 61 SDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL----------------- 123 (378) Q Consensus 61 ~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~----------------- 123 (378) . ....+...|+ +....-........+..+++.+|.||+++ +.+..|.+.-. T Consensus 118 ~----------~~~~~~~~l~-~~~~~n~~~~~~~~~~~~~~~~G~a~~~v-~~dedg~~~i~~~~p~~~~~v~d~~~~~ 185 (501) T protein:vir:96 118 D----------DNSQNDDAIK-RIGRINDLDSLNRTLIRDLSQTGRAYEVI-YRSEYDETRIKRLSPLETFVIYDNSLED 185 (501) T ss_pred c----------chhHHHHHHH-HHHHhcCHHHHHHHHHHHHhhcCeEEEEE-EEcCCCceEEEEEccceeEEEEcCCCCC Confidence 0 1223333332 12222244556777889999999999875 34544544211 Q ss_pred --------eec---CCeE----EEeeeEEEE------------------------EccccCCccccch---HHHHHHHHH Q lcl|Aclame:pro 124 --------LFA---DDKK----EYKPEELVR------------------------LTSPFYINEDTSI---LDNALASIQ 161 (378) Q Consensus 124 --------~~~---~~~~----~~~~~dvih------------------------~r~~~~~~~~~~~---~~~~~~~i~ 161 (378) |.. .+.. .|.++.+.+ +++.. .|.|. +..+.++++ T Consensus 186 ~~~~~v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~---~g~sd~e~v~~liDa~d 262 (501) T protein:vir:96 186 NSIAAVRYYNRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYLNNI---DGIGDYETELYLIDLYD 262 (501) T ss_pred ceEEEEEEEEeecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEecCCc---cCCCchhhhHHHHHHHH Confidence 110 0000 122233333 22211 12332 223333332 Q ss_pred H----HHh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHH Q lcl|Aclame:pro 162 T----KLE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEID 232 (378) Q Consensus 162 ~----~~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~ 232 (378) . ..+ .+.+.-++.-....+.+ +....+... +.. .-...+.......+.+++-++........ ..++ T Consensus 263 ~~~s~~~~~~~~~~~~~l~i~G~~~~~~~---~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 337 (501) T protein:vir:96 263 SAESDTANHMSDMADAILAIYGDLALPKG---MQASDMKRT-RLM-QLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKT 337 (501) T ss_pred HHHHHHHHHHHHhcCceeeeecccccCcc---cchhhhhhc-Cee-eecccccccccccCcceeeEeccCCHHHHHHHHH Confidence 2 111 12222222111111111 001111110 000 00000111112233344444332222222 3456 Q ss_pred HHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccc Q lcl|Aclame:pro 233 LIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLY 295 (378) Q Consensus 233 ~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~ 295 (378) .+++.|+..-++|.... +|+.+... ....+...|.-+++.+...++..--. ...... T Consensus 338 ~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~------~~~d~~ 411 (501) T protein:vir:96 338 RLNRDIHIFTNTPDMSDTNFSGNTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEF------KDFDES 411 (501) T ss_pred HHHHHHHHHhCCcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cccccc Confidence 77888888888886433 23322211 12345555666665555554432100 001112 Q ss_pred eeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC--CCCee----------eecccceecccchhcc Q lcl|Aclame:pro 296 YERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE--GGDVY----------IANLNAVAVKNLSDLQ 363 (378) Q Consensus 296 ~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~--gGD~~----------~~~~n~~~~~~~~~~~ 363 (378) .+++.| ...+..|.++.++++.++. |+++..-+.+++++-.-| .-+.+ ..+..+-+ ..... T Consensus 412 ~i~i~f--~~~~p~n~~e~ad~~~kl~--g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~---~~~~~ 484 (501) T protein:vir:96 412 LLKITF--TPNLPKSLNEQVSILTGLG--GQVSQETALSLSGLVESPNEELDKINKEMSEIDFKGYSNDFNE---HVGKY 484 (501) T ss_pred cceEEe--CCCCCcCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHhhccccccchhh---ccccc Confidence 345555 4556678999999999885 789988888877553211 11110 00111101 11111 Q ss_pred CccCCCCCCCCCCCC Q lcl|Aclame:pro 364 GSRKDVTSTDETNNQ 378 (378) Q Consensus 364 ~~~~~~~~~~e~~~e 378 (378) ....++.++++..++ T Consensus 485 ~~~~~e~~~d~~e~~ 499 (501) T protein:vir:96 485 TDEVKETHTDDFERE 499 (501) T ss_pred CCcCCCCCCCccccc Confidence 111222233333333 No 181 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=89.80 E-value=0.024 Score=29.44 Aligned_cols=340 Identities=9% Similarity=-0.027 Sum_probs=137.1 Q ss_pred CCccccccc----ccccc---ccC--Cccceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVS----FSRGK---LNN--DTQRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~----~~~~~---~~~--~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) +..+..... ..+.. ... .+........ .......+....+|+..++-+-+-|+.+-- ..+ ... .+ T Consensus 38 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~-~~~-~~~---~e 112 (474) T protein:vir:10 38 YNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDL-DEN-AEK---NE 112 (474) T ss_pred HHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEee-CCC-Ccc---hH Confidence 011100000 00000 000 0000000000 001122345566788888877777876421 111 000 01 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE----------EeecC------------- Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD----------LLFAD------------- 127 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~----------~~~~~------------- 127 (378) .....|.++++. | ........+...++.+|.||.++ +.+..|++.- +|.+. T Consensus 113 ~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~~-~~d~~~~~~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~ 186 (474) T protein:vir:10 113 KLKKFITNFAIR--N---SVDDEDSEIGKMAAICGYGARLA-YIDTNGDIRIKNIDPYNVIFVGDNILEPTYSLRYFYEK 186 (474) T ss_pred HHHHHHHHHHhh--c---CHhHHHHHHHHHHhhcCeEEEEE-EeCCCCeeEEEEEcccceEEEEcCCCceEEEEEEEEEe Confidence 111233444431 2 34456677888999999999875 3455554321 11110 Q ss_pred ----Ce-E----EEeeeEEEEE--------------------------ccccCCccccchHHHHHHHHHHHH----h--- Q lcl|Aclame:pro 128 ----DK-K----EYKPEELVRL--------------------------TSPFYINEDTSILDNALASIQTKL----E--- 165 (378) Q Consensus 128 ----~~-~----~~~~~dvih~--------------------------r~~~~~~~~~~~~~~~~~~i~~~~----~--- 165 (378) +. + .|....+.++ ++...+...+.++..+.++++..+ + T Consensus 187 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~ 266 (474) T protein:vir:10 187 DDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEIS 266 (474) T ss_pred eCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH Confidence 00 0 1122222222 221111111222333333333211 1 Q ss_pred -cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHHHHHHHHHHHHhC Q lcl|Aclame:pro 166 -QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYF 243 (378) Q Consensus 166 -~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fg 243 (378) .+.|--++ ....++++.... + . ..+.+.+.+.+.+++-+........ ...++.+.+.|+..-+ T Consensus 267 ~~~~~~l~i-~g~~~~~~~~~~----~----~------~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~ 331 (474) T protein:vir:10 267 QTRLAYLVL-RGMGMSEEMIQE----T----Q------KSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAK 331 (474) T ss_pred Hhhcchhhh-ccCCCCchhhhh----h----h------hcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhC Confidence 12222222 222333322111 1 0 1223445566666666654332222 3446778889999989 Q ss_pred CCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhh Q lcl|Aclame:pro 244 MNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLF 306 (378) Q Consensus 244 VPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l 306 (378) +|.... +|+.+... ....+...|.-.++.|...++.+-.... ......+++.| ..- T Consensus 332 ~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~-----~~~~~~i~~~f--~~~ 404 (474) T protein:vir:10 332 SVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLD-----DDSYLNLIFKF--TRN 404 (474) T ss_pred CcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----ccccccceEEe--CCC Confidence 886433 23322211 1235566666666666666654321000 00112344445 445 Q ss_pred hhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecccceecccchhccCccCC-CCCCCCCC Q lcl|Aclame:pro 307 KFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSRKD-VTSTDETN 376 (378) Q Consensus 307 ~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~~~~~~~~-~~~~~e~~ 376 (378) ...|.++.++++.++ .|+++..-+.+++++-+-+. .+.+--- ..-..+...+..++..+ ..+.++.+ T Consensus 405 ~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~d~~~E~eri~~E-~~e~~~~~~~~~~~~~~~~~~~~~s~ 474 (474) T protein:vir:10 405 IPVNKLEESQVLINL--KGQVSERTRLGQSQLVDDVDYELDEMEKE-SLEFNDKLPDIDEGDANDKSQNNQSE 474 (474) T ss_pred CCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHH-HHHHHhhcccccCCCcCCCCccccCC Confidence 667899999999887 48999988888876532111 1110000 00000001111111111 11111111 No 182 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=89.80 E-value=0.024 Score=29.44 Aligned_cols=340 Identities=9% Similarity=-0.027 Sum_probs=137.1 Q ss_pred CCccccccc----ccccc---ccC--Cccceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVS----FSRGK---LNN--DTQRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~----~~~~~---~~~--~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) +..+..... ..+.. ... .+........ .......+....+|+..++-+-+-|+.+-- ..+ ... .+ T Consensus 38 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~-~~~-~~~---~e 112 (474) T protein:vir:94 38 YNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDL-DEN-AEK---NE 112 (474) T ss_pred HHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEee-CCC-Ccc---hH Confidence 011100000 00000 000 0000000000 001122345566788888877777876421 111 000 01 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE----------EeecC------------- Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD----------LLFAD------------- 127 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~----------~~~~~------------- 127 (378) .....|.++++. | ........+...++.+|.||.++ +.+..|++.- +|.+. T Consensus 113 ~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~~-~~d~~~~~~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~ 186 (474) T protein:vir:94 113 KLKKFITNFAIR--N---SVDDEDSEIGKMAAICGYGARLA-YIDTNGDIRIKNIDPYNVIFVGDNILEPTYSLRYFYEK 186 (474) T ss_pred HHHHHHHHHHhh--c---CHhHHHHHHHHHHhhcCeEEEEE-EeCCCCeeEEEEEcccceEEEEcCCCceEEEEEEEEEe Confidence 111233444431 2 34456677888999999999875 3455554321 11110 Q ss_pred ----Ce-E----EEeeeEEEEE--------------------------ccccCCccccchHHHHHHHHHHHH----h--- Q lcl|Aclame:pro 128 ----DK-K----EYKPEELVRL--------------------------TSPFYINEDTSILDNALASIQTKL----E--- 165 (378) Q Consensus 128 ----~~-~----~~~~~dvih~--------------------------r~~~~~~~~~~~~~~~~~~i~~~~----~--- 165 (378) +. + .|....+.++ ++...+...+.++..+.++++..+ + T Consensus 187 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~ 266 (474) T protein:vir:94 187 DDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEIS 266 (474) T ss_pred eCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH Confidence 00 0 1122222222 221111111222333333333211 1 Q ss_pred -cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHHHHHHHHHHHHhC Q lcl|Aclame:pro 166 -QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYF 243 (378) Q Consensus 166 -~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fg 243 (378) .+.|--++ ....++++.... + . ..+.+.+.+.+.+++-+........ ...++.+.+.|+..-+ T Consensus 267 ~~~~~~l~i-~g~~~~~~~~~~----~----~------~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~ 331 (474) T protein:vir:94 267 QTRLAYLVL-RGMGMSEEMIQE----T----Q------KSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAK 331 (474) T ss_pred Hhhcchhhh-ccCCCCchhhhh----h----h------hcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhC Confidence 12222222 222333322111 1 0 1223445566666666654332222 3446778889999989 Q ss_pred CCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhh Q lcl|Aclame:pro 244 MNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLF 306 (378) Q Consensus 244 VPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l 306 (378) +|.... +|+.+... ....+...|.-.++.|...++.+-.... ......+++.| ..- T Consensus 332 ~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~-----~~~~~~i~~~f--~~~ 404 (474) T protein:vir:94 332 SVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLD-----DDSYLNLIFKF--TRN 404 (474) T ss_pred CcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-----ccccccceEEe--CCC Confidence 886433 23322211 1235566666666666666654321000 00112344445 445 Q ss_pred hhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecccceecccchhccCccCC-CCCCCCCC Q lcl|Aclame:pro 307 KFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSRKD-VTSTDETN 376 (378) Q Consensus 307 ~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~~~~~~~~-~~~~~e~~ 376 (378) ...|.++.++++.++ .|+++..-+.+++++-+-+. .+.+--- ..-..+...+..++..+ ..+.++.+ T Consensus 405 ~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~d~~~E~eri~~E-~~e~~~~~~~~~~~~~~~~~~~~~s~ 474 (474) T protein:vir:94 405 IPVNKLEESQVLINL--KGQVSERTRLGQSQLVDDVDYELDEMEKE-SLEFNDKLPDIDEGDANDKSQNNQSE 474 (474) T ss_pred CCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHH-HHHHHhhcccccCCCcCCCCccccCC Confidence 667899999999887 48999988888876532111 1110000 00000001111111111 11111111 No 183 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=89.60 E-value=0.025 Score=29.33 Aligned_cols=350 Identities=11% Similarity=-0.018 Sum_probs=132.2 Q ss_pred CCcccc--------ccccccccccCCcc---ceeeccc---chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGK--------VVSFSRGKLNNDTQ---RVTAWQN---EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~--------~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) ..+..+ +.... -++.+.-. ....... .............|+..+.-+-+-|+.+- . .+ T Consensus 46 ~~~i~~~~~~~~~r~~~l~-~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-~--~d---- 117 (511) T protein:vir:10 46 SKCIEHHMDYQRPRLKVLS-DYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ-D--DD---- 117 (511) T ss_pred HHHHHHHHHhhHHHHHHHH-HHhcccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceee-c--Cc---- Confidence 011110 00000 01111000 0000000 00111223445667777777777777641 1 10 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e--------cC--------- Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F--------AD--------- 127 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~--------~~--------- 127 (378) ......|.++++. | ........+...++.+|.||.++ +.+..|++.-.+ | +. T Consensus 118 ---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~i~G~ay~~v-y~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~v 188 (511) T protein:vir:10 118 ---KDVLEAIEAFNDL--N---DVESHNRSLGLDLSIYGKAYEIM-IRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGV 188 (511) T ss_pred ---hHHHHHHHHHHhh--c---CHHHHHHHHHHHHHhcCeeEEEE-EeCCCCceEEEEEccceeEEEEcCCCCCceEEEE Confidence 0123445555542 3 23345566788899999999875 355555432111 1 00 Q ss_pred -------------CeE----EEeeeEEEEEcccc------------------C---------CccccchH---HHHHHHH Q lcl|Aclame:pro 128 -------------DKK----EYKPEELVRLTSPF------------------Y---------INEDTSIL---DNALASI 160 (378) Q Consensus 128 -------------~~~----~~~~~dvih~r~~~------------------~---------~~~~~~~~---~~~~~~i 160 (378) ..+ .|.++.+.++.... . ...+.|.+ ..+.+++ T Consensus 189 r~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:10 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHHHHHHH Confidence 000 12233333332100 0 01122322 2223333 Q ss_pred HHHH----h----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHH Q lcl|Aclame:pro 161 QTKL----E----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEI 231 (378) Q Consensus 161 ~~~~----~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~ 231 (378) +..+ + .+.+--++.-....+++.....++.-.-.+... ..-.+.....+.+.+++-|+........ ..+ T Consensus 269 d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~ 346 (511) T protein:vir:10 269 DNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPT--VYADSEGRETEGSVDGGYIYKQYDVQGTEAYK 346 (511) T ss_pred HHHHHHHHHHHHHhhCceeeeeccccCCchhhccchhccceecccc--cccccccccCCCCcceeEEeecCCHHHHHHHH Confidence 2211 1 122222222212222222211111100000000 0000011123445555555433222222 345 Q ss_pred HHHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcccc Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~ 294 (378) +.+.+.|+..-++|..-. +|+.+... ....+...|.-.++.|.+.+...--.. ..... T Consensus 347 ~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~-----~~~d~ 421 (511) T protein:vir:10 347 DRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID-----ANKDF 421 (511) T ss_pred HHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-----ccccc Confidence 777888998888886432 23323211 123555566666666655554322100 00111 Q ss_pred ceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee------ecccceecccchhccCcc Q lcl|Aclame:pro 295 YYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI------ANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 295 ~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~------~~~n~~~~~~~~~~~~~~ 366 (378) ..+++.| ..-+..|..+.++++.++. |+++.--+.+++++-+-|. -+.+- .+....+........... T Consensus 422 ~~i~i~f--~~~~p~d~~~~~~~~~kl~--G~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 497 (511) T protein:vir:10 422 NTVRYVY--NRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDD 497 (511) T ss_pred ceeeEEe--CCCCCcCHHHHHHHHHHHh--ccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC Confidence 2344445 4556788999999999984 8899888888876532111 11000 000000000000000000 Q ss_pred CCCCCCCCCCCC Q lcl|Aclame:pro 367 KDVTSTDETNNQ 378 (378) Q Consensus 367 ~~~~~~~e~~~e 378 (378) +.+.++++..+| T Consensus 498 ~~~~~~~~~~~~ 509 (511) T protein:vir:10 498 EQDDDTKDTVDK 509 (511) T ss_pred CCCCcccCcccc Confidence 111111111111 No 184 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=89.53 E-value=0.026 Score=29.29 Aligned_cols=342 Identities=8% Similarity=-0.007 Sum_probs=132.4 Q ss_pred CCccccccccccccccCCcccee-------ecccc-hhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceecc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVT-------AWQNE-AVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMA 72 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~ 72 (378) +....+.....+ ++.+....+. ..... ......++...+|+..++-+..-|+.+-. . + ... T Consensus 44 ~~~~~~~~~~~~-yY~g~~~~i~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~-~--d-------~~~ 112 (481) T protein:vir:10 44 TEQVPRLEMLES-YYLNRNTDILAGERRLQKYGDKADHRAVHNYAKYVSRFIVGYLTGNPITITH-Q--D-------NQT 112 (481) T ss_pred HHHHHHHHHHHH-HhcCCCcccccCccccccccccccceeecchHHHHHHHHHhhhccCCceEec-C--C-------hhH Confidence 000000000000 0111000000 00000 01123345567788888877777765321 1 1 112 Q ss_pred CchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE--ee--------c---------------- Q lcl|Aclame:pro 73 GSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL--LF--------A---------------- 126 (378) Q Consensus 73 ~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~--~~--------~---------------- 126 (378) +..|.+++.. | ....+...+....+.+|.||+++. .+..|++.-. -| . T Consensus 113 ~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~~~-~d~dg~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~ 186 (481) T protein:vir:10 113 NDKIIELNDL--N---DADEVNSDLALNLSIYGRAYEIVY-RDFEDRDTFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQ 186 (481) T ss_pred HHHHHHHHHh--c---ChhHHHHHHHHHHHhcCeEEEEEE-eCCCCeEEEEEEcccceEEEEcCCCCCceEEEEEEEEEe Confidence 3456776653 3 344577788899999999998763 4445544311 11 0 Q ss_pred ---CCeE----EEeeeEEEEEccc-------------cC---------Cccccch---HHHHHHHHHHHH----h----c Q lcl|Aclame:pro 127 ---DDKK----EYKPEELVRLTSP-------------FY---------INEDTSI---LDNALASIQTKL----E----Q 166 (378) Q Consensus 127 ---~~~~----~~~~~dvih~r~~-------------~~---------~~~~~~~---~~~~~~~i~~~~----~----~ 166 (378) +..+ .|.++.|.|++.. ++ ...+.|. +..+.++++..+ + . T Consensus 187 ~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~ 266 (481) T protein:vir:10 187 DKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDTANYMTDL 266 (481) T ss_pred eCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh Confidence 0000 1233344443210 00 0112332 223333332211 1 1 Q ss_pred CCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 167 GKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMN 245 (378) Q Consensus 167 ~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVP 245 (378) +.+.-++.-....+++.....+.. .. ... .........+.+.+++-+........ ...++.+++.|+..-++| T Consensus 267 ~~~~~~~~g~~~~~~~~~~~~~~~---~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p 340 (481) T protein:vir:10 267 NDAMLAIIGNVDLDSEDAKAFRDA---NM--IHL-EPGTNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTP 340 (481) T ss_pred cCceeEeecCcCCCccchhhhhhc---cc--eec-cccccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCc Confidence 233333322222223222211110 00 000 00000111122333333332222222 234577788899999998 Q ss_pred HHHhc---ccchHHHH--------------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhh Q lcl|Aclame:pro 246 ENILL---GTASQEQQ--------------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKF 308 (378) Q Consensus 246 p~~l~---~~~~e~~~--------------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~ 308 (378) ....+ ++.+.... ...+...|.-+++.+...++..-. .......+++.| ..... T Consensus 341 ~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~-------~~~~~~~i~v~f--~~~~~ 411 (481) T protein:vir:10 341 DLNDEQFSGVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGL-------KQHNYAELTITF--TPNLP 411 (481) T ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------CccccceeeEEe--CCCCC Confidence 75432 33222111 123333344344333333332110 001112344555 45566 Q ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCC--CCCCeeeec-ccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 309 ATLKELIDLYHENINGPIFTQNQLLVKMGEQPI--EGGDVYIAN-LNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 309 ~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~--~gGD~~~~~-~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .|..+.++++.++. |+++.-.+.+++++-.- +.-+.+.-- ....+.. .....++....+++.++++ T Consensus 412 ~~~~~~a~~~~kl~--g~is~et~~~~l~~i~d~~~E~~ri~~E~~~~~~~~--~~~~~~~~~~~~~~~dd~~ 480 (481) T protein:vir:10 412 KSMMESINAFNALS--GGVSESTRLSLLDFIDNPKEELEKMQEEEAQREKQA--DKRGYGEAFENHLNVDDSN 480 (481) T ss_pred cCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhh--hhccCCccCCCCCCCCCCC Confidence 78899999998874 78998888887765221 111110000 0000000 0001112222222233333 No 185 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=89.22 E-value=0.028 Score=29.13 Aligned_cols=341 Identities=12% Similarity=0.043 Sum_probs=126.3 Q ss_pred CCcc------------------ccccccccccccCCccceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEeccc Q lcl|Aclame:pro 1 MNLF------------------GKVVSFSRGKLNNDTQRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKS 61 (378) Q Consensus 1 M~~f------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 61 (378) |.-- .+...+-.|.-.-...+...... ........+..-+|+..++.+--..| +...+ T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~---~~~~d 77 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGF---RISED 77 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccccchhhhhhhhhcchHHHHHHHHHhhhccCce---ecCCC Confidence 1000 00000000000000000000000 00011122344556666655432222 21111 Q ss_pred ccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE-----eCCCceEEE--Eee--------- Q lcl|Aclame:pro 62 DVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVF-----DDNTGELLD--LLF--------- 125 (378) Q Consensus 62 ~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~-----~~~~g~~~~--~~~--------- 125 (378) ......+.++++. |. .......+..+.+.+|.||+++.. .+..|.+.- +-| T Consensus 78 --------~~~~~~l~~i~~~--N~---~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~~i~D~ 144 (480) T protein:vir:78 78 --------SEGLEELWNWWQA--ND---LDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMYAELDP 144 (480) T ss_pred --------chhHHHHHHHHHh--cC---HHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceEEEEcC Confidence 1124556777652 32 344567788999999999976531 012233211 000 Q ss_pred ----------------cC-Ce----EEEeeeEEEEE-----------------------------ccccC--CccccchH Q lcl|Aclame:pro 126 ----------------AD-DK----KEYKPEELVRL-----------------------------TSPFY--INEDTSIL 153 (378) Q Consensus 126 ----------------~~-~~----~~~~~~dvih~-----------------------------r~~~~--~~~~~~~~ 153 (378) ++ +. ..|.++.++++ .|... ...|.|-+ T Consensus 145 ~~~~~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi 224 (480) T protein:vir:78 145 RNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEI 224 (480) T ss_pred CCccceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccCCccCccch Confidence 00 00 01223333333 22110 01122222 Q ss_pred ----HHHHHHHHH----HHhc----CCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEec-CCceeeecc Q lcl|Aclame:pro 154 ----DNALASIQT----KLEQ----GKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVD-NKTEIVELK 220 (378) Q Consensus 154 ----~~~~~~i~~----~~~~----~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~ 220 (378) ..+.+++.. ..+. +.|.-++ +...+++.........|... .+.++.++ ++.++.++. T Consensus 225 ~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i-~G~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 294 (480) T protein:vir:78 225 SPELRKVTDAASRTLMNLQSASQILGTPLRVI-SGVTTDELTNDGENTTLDIY---------YGRILTLASEAAKISEFK 294 (480) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh-hCCCccccccccccchhhhh---------hhhhccCCCCCceEEecC Confidence 222333322 1111 1222122 11111111000001111111 12344443 456676665 Q ss_pred cchhhhhHHHHHHHHHHHHHHhCCCHHHhcccc----hHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 221 KDYSVLNKDEIDLIKSELLTGYFMNENILLGTA----SQEQQI--------------YFYNSTIIPLLIQLEKELTYKLI 282 (378) Q Consensus 221 ~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~----~e~~~~--------------~f~~~~l~P~~~~ie~~l~~~Ll 282 (378) ....+.-.+.++.+..+++.+=++|++.+++.. +....+ ..+...|.-.++.+....... T Consensus 295 ~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~-- 372 (480) T protein:vir:78 295 AAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGRE-- 372 (480) T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-- Confidence 433222234466777888888899999997642 221111 122223333333322211100 Q ss_pred ChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCC--CCCHHHHHHHhCCCCCCC--CCeeeecccceeccc Q lcl|Aclame:pro 283 STNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGP--IFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKN 358 (378) Q Consensus 283 ~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G--~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~ 358 (378) .......+++.| ......+..+.++.+.+++.+| +++..-+++++|+.+-+- -++........+++. T Consensus 373 -------~~~~~~~i~v~w--~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~~~~~~~ 443 (480) T protein:vir:78 373 -------VTEEYTRLETVW--RDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDT 443 (480) T ss_pred -------ccccceeeeEEe--cCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHH Confidence 001112334444 4445667788899999988876 677777788888875321 111110111111111 Q ss_pred c---hhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 359 L---SDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 359 ~---~~~~~~~~~~~~~~e~~~e 378 (378) + .+++.........++..+| T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~ 466 (480) T protein:vir:78 444 LYSTTKAQADATPKPTVTETKTE 466 (480) T ss_pred hhccccCCCccccCCCCCCCCCc Confidence 0 0111101111111122222 No 186 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=87.65 E-value=0.037 Score=28.41 Aligned_cols=332 Identities=12% Similarity=-0.021 Sum_probs=132.3 Q ss_pred CCcccc------------------------ccccccccccCCccce----eecccchhhhhhHHHHHHHHHHHhhhccCc Q lcl|Aclame:pro 1 MNLFGK------------------------VVSFSRGKLNNDTQRV----TAWQNEAVEYTSAFVTNIHNKIANEITKVE 52 (378) Q Consensus 1 M~~f~~------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p 52 (378) -++|.- +... ..++.+...-. ............++....|+..+.-+-.-| T Consensus 6 ~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~-~~Yy~g~~~i~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~ 84 (452) T protein:vir:36 6 PKLMTFSKDEPITVEVVTKFMEKHKLEVARYEYL-KNMYLGIMAIDDEPAKDSWKPDNRLAVNFTKYIVDTFTGYFNGIP 84 (452) T ss_pred ceeEEcCCccCCCHHHHHHHHHHHHHHHHHHHHH-HHHhccccccccCccccccCccceeecchHHHHHHHHhhhhcccC Confidence 000100 0000 00000000000 000000011123445566777777766667 Q ss_pred eEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e----- Q lcl|Aclame:pro 53 FNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F----- 125 (378) Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~----- 125 (378) +.+- .. + ......|.++++. | ........+....+.+|.||.++ +.+..|++.-.+ | T Consensus 85 ~~~~-~~--d-------~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v-~~d~~g~~~i~~~~p~~~~~ 148 (452) T protein:vir:36 85 VKKS-HS--D-------KEILTKLQEFDNL--N---DMEDEESELAKMACIYGRAFEFL-YQDEDTQTNVVYNSPENMFM 148 (452) T ss_pred ceee-cC--C-------hhHHHHHHHHHhh--c---ChhHHHHHHHHHHHhcCeEEEEE-EecCCCeeEEEEEcccceEE Confidence 6531 11 0 1122345555542 2 23345566788899999999775 345555543211 1 Q ss_pred ---cC----------------Ce---EEEeeeEEEEE-------------------------ccccCCccccchHHHHHH Q lcl|Aclame:pro 126 ---AD----------------DK---KEYKPEELVRL-------------------------TSPFYINEDTSILDNALA 158 (378) Q Consensus 126 ---~~----------------~~---~~~~~~dvih~-------------------------r~~~~~~~~~~~~~~~~~ 158 (378) +. .. ..|.++.++++ ++...+...+.++..+.+ T Consensus 149 v~d~~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~~~g~sd~e~v~~liD 228 (452) T protein:vir:36 149 VYDDTVKQEPLFAVRYGVDEDKKLQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYFNEERMSIFESVISLVN 228 (452) T ss_pred EEcCCCCCceEEEEEEEEecCceEEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecCCCCCCcchHHHHHHHH Confidence 00 00 01223333332 211111111222333333 Q ss_pred HHHHHH--------hcCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecC-----Cceeeecccchhh Q lcl|Aclame:pro 159 SIQTKL--------EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN-----KTEIVELKKDYSV 225 (378) Q Consensus 159 ~i~~~~--------~~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----g~~~~~l~~~~~~ 225 (378) +++..+ ..+.|.-++ ....++++.... ++. .+++.+.. +.+++.+...... T Consensus 229 a~d~~~s~~~~~~~~~~~p~~~~-~g~~~~~~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~ 292 (452) T protein:vir:36 229 AFNKAISEKANDVDYFSDQYLTF-LGAAVEEEDLKN----IRS-----------NRVINYYADGEGKNVDVKFLEKPDSD 292 (452) T ss_pred HHHHHHHHHHHHHHHhcCceeEe-ecCCcCchhhhh----hhh-----------cceEEecCCCCccCCcceeEeecCCH Confidence 333221 123333333 233333332211 110 12233322 2233333322212 Q ss_pred hh-HHHHHHHHHHHHHHhCCCHHHhc--ccchHH--------------HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHh Q lcl|Aclame:pro 226 LN-KDEIDLIKSELLTGYFMNENILL--GTASQE--------------QQIYFYNSTIIPLLIQLEKELTYKLISTNRRR 288 (378) Q Consensus 226 ~~-~~~~~~~~~~Ia~~fgVPp~~l~--~~~~e~--------------~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~ 288 (378) .. ...++.+.+.|+..-++|..-.. |+.+.. .....+...|...++.|..-++.+- T Consensus 293 ~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~------- 365 (452) T protein:vir:36 293 SQTENLLDRLTKLIFQTTMVANISDESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVS------- 365 (452) T ss_pred HHHHHHHHHHHHHHHHHhCccccCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------- Confidence 22 23457778889888888853221 222211 1223556666666666655444221 Q ss_pred hhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecccceecccchhccCcc Q lcl|Aclame:pro 289 VVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 289 ~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~~~~~~ 366 (378) .......+++.|. .....|..+.++.+.++ .|+++.--+.+++++-+-+. .+++--- +-.......+.+++. T Consensus 366 -~~~~~~~i~i~f~--~~~p~d~~~~a~~~~k~--~g~iS~et~~~~~~~~~d~~~E~~ri~~E-~~~~~~~~~~~~~~~ 439 (452) T protein:vir:36 366 -NKDSWKDIEYTFT--RNEPKDIKEQAETANIL--MGITSQETALSVISVIPDVQAEMEKIKKE-EASTAIFDKDKQPSE 439 (452) T ss_pred -CccccccceEEeC--CCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHH-HHHHHHHHhhccCCC Confidence 0111223455554 45667899999998887 57899888888776532111 1110000 000000001111222 Q ss_pred C-CCCCCCCCCCC Q lcl|Aclame:pro 367 K-DVTSTDETNNQ 378 (378) Q Consensus 367 ~-~~~~~~e~~~e 378 (378) . .++..+++++| T Consensus 440 ~~~~~~~~~~~~e 452 (452) T protein:vir:36 440 KGTDTVVSETNEE 452 (452) T ss_pred CcccccCccccCC Confidence 2 22233344444 No 187 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=87.60 E-value=0.038 Score=28.39 Aligned_cols=317 Identities=10% Similarity=0.001 Sum_probs=125.2 Q ss_pred CCccccccccccccccCCc----cceeecccchhhh--hhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCc Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDT----QRVTAWQNEAVEY--TSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~ 74 (378) |+++.--......++.+.. .++..-......+ -..+..-+|+.+|+.+- +.=|+ ..+. T Consensus 1 l~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vds~a~rl~---~~Gf~-------------~~d~ 64 (410) T protein:vir:95 1 MNLYQSRVNLRYKHYAMQHYEAPTGITIPAHIRAKYQAVLGWAAKGVDSLADRLI---FRAFA-------------NDDF 64 (410) T ss_pred CCcchhhHHHHHHHhcCCCCccccchhccHHHHhHHHhhcchhHHHHHHhHhhhc---ccccc-------------CCCc Confidence 5555321111111222111 1111111100001 11234445555555332 11111 1233 Q ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eee----------------------c--CC Q lcl|Aclame:pro 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLF----------------------A--DD 128 (378) Q Consensus 75 ~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~----------------------~--~~ 128 (378) .+.+++.. |.. ......+..+.+++|.||+++. .+..|.+.- .-| . ++ T Consensus 65 ~l~~i~~~--N~l---d~~~~~~~~~al~~G~sf~~v~-~~~d~~~~i~~~sP~~~~~i~Dp~~~~~~~al~~~~~~~~~ 138 (410) T protein:vir:95 65 NVTEIFDR--NNP---DIFFDSAILSALIGSCSFVYIS-KGEDDEVRLQVIESSNATGVIDPITGLLVEGYAVLARDDYN 138 (410) T ss_pred hHHHHHhh--cCh---HHHHHHHHHHHHHhCceeEEEe-cCCCCceEEEEEcccceEEEEeCCCCceEEEEEEEEecCCC Confidence 46666642 332 2344566788999999998763 444443211 101 0 01 Q ss_pred e----EEEeeeEE---------------------EEEccccCCc--cccc----hHHHHHHHHH----HHHh----cCCc Q lcl|Aclame:pro 129 K----KEYKPEEL---------------------VRLTSPFYIN--EDTS----ILDNALASIQ----TKLE----QGKL 169 (378) Q Consensus 129 ~----~~~~~~dv---------------------ih~r~~~~~~--~~~~----~~~~~~~~i~----~~~~----~~~~ 169 (378) . ..|.++.+ ++|.|..... .|.| ++..+.+++. .... .+.| T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~p 218 (410) T protein:vir:95 139 RPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWP 218 (410) T ss_pred eEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcch Confidence 0 11223333 3332211111 1222 2333333322 2111 2222 Q ss_pred -ceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecC-----Cceeeecccchhhhh--HHHHHHHHHHHHHH Q lcl|Aclame:pro 170 -RGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN-----KTEIVELKKDYSVLN--KDEIDLIKSELLTG 241 (378) Q Consensus 170 -~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----g~~~~~l~~~~~~~~--~~~~~~~~~~Ia~~ 241 (378) +.++-.+ ++. ...+.|+... ++++.++. +.++.+++... ++ .+.++.+...||.. T Consensus 219 qr~i~G~d----~d~--~~~~~~~~~~---------~~i~~~~~~~~~~~~~v~q~~~~~--l~~~~~~l~~l~~~~a~~ 281 (410) T protein:vir:95 219 QKYILGLD----PDA--EPMEKWKATV---------SSLLTISSSDKGVKPSVGQFTTAS--MSPFTEQLRTAAAGFAGE 281 (410) T ss_pred hheeeccC----CCC--CcCchhhhhh---------hhheeccCCCCCCcceEEecCCCC--hHHHHHHHHHHHHHHhhh Confidence 2232221 111 1112333322 23555542 35666664322 33 35567888899999 Q ss_pred hCCCHHHhcccchHHH---HHHHHHHHHHHHHH----HHHHHHHhhcCChhHHhhhc----cccceeeEEecc-hhhhhc Q lcl|Aclame:pro 242 YFMNENILLGTASQEQ---QIYFYNSTIIPLLI----QLEKELTYKLISTNRRRVVK----GNLYYERIIVDN-QLFKFA 309 (378) Q Consensus 242 fgVPp~~l~~~~~e~~---~~~f~~~~l~P~~~----~ie~~l~~~Ll~~~~~~~g~----~~~~~~~~~~d~-~~l~~~ 309 (378) =++|++.+++...+.. ........|.-.++ .+.+.+.+-+----....+. ...+..++.+.. ...... T Consensus 282 s~lP~~~lg~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~ 361 (410) T protein:vir:95 282 MGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAVKWEPLFEADAN 361 (410) T ss_pred cCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeEEeeecCCcchh Confidence 9999999986432111 11111111111111 11112211000000000000 011122222210 022334 Q ss_pred CHHHHHHHHHHHHhC--CCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCcc Q lcl|Aclame:pro 310 TLKELIDLYHENING--PIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 310 d~~~~~~~~~~~~~~--G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~ 366 (378) +....++++.|++++ |+.+..-+++.+|+.+-+ +. ..........|+ T Consensus 362 s~a~~aDa~~Kl~~a~~g~~~~~~~~~~lg~~~~~---~~-------~~~~~e~~~~g~ 410 (410) T protein:vir:95 362 TMTMIGDGVVKLNQALPGYINAETIRDLTGIAGDM---SA-------KPVVSEGGSNGE 410 (410) T ss_pred hHHHHHHHHHHHHHhccCCccHHHHHHhcCCChHH---HH-------HHHHHHHHhCCC Confidence 678889999999998 788888899999997531 10 000000001111 No 188 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=85.47 E-value=0.053 Score=27.60 Aligned_cols=350 Identities=10% Similarity=-0.003 Sum_probs=132.4 Q ss_pred CCcccc--------ccccccccccCCcc---ceeeccc---chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGK--------VVSFSRGKLNNDTQ---RVTAWQN---EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~--------~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) ..|..+ +.... -++.+.-. ....... ...........-.|+..+.-+-+-|+.+- . .+ T Consensus 46 ~~~i~~~~~~~~~r~~~l~-~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~-~-~~----- 117 (511) T protein:vir:96 46 SKYIEHHMDYQRPRLKVLS-DYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQ-D-DD----- 117 (511) T ss_pred HHHHHHHHHhhHHHHHHHH-HHhcccCccccccCcCcccccCcceeecchHHHHHHHHHhhhccCCceee-c-Cc----- Confidence 011110 00000 00000000 0000000 00011223445667777777777777641 1 11 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e--------cCC-------- Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F--------ADD-------- 128 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~--------~~~-------- 128 (378) ......|.++++. | ........+...++.+|.||.++ +.+..|++.-.+ | +.. T Consensus 118 ---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~i~G~a~~~v-y~ded~~~~i~~~~p~~~~~vydd~~~~~~~~~v 188 (511) T protein:vir:96 118 ---KDVLEAIEAFNDL--N---DVESHNRSLGLDLSIYGKAYELM-IRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGV 188 (511) T ss_pred ---hHHHHHHHHHHhh--c---CHHHHHHHHHHHHHhcCeeEEEE-EeCCCCceEEEEEccceeEEEEcCCCCCceEEEE Confidence 0122345555532 2 34445567788899999999875 345555432211 1 000 Q ss_pred --------------eE----EEeeeEEEEEccccC---------------------------CccccchHH---HHHHHH Q lcl|Aclame:pro 129 --------------KK----EYKPEELVRLTSPFY---------------------------INEDTSILD---NALASI 160 (378) Q Consensus 129 --------------~~----~~~~~dvih~r~~~~---------------------------~~~~~~~~~---~~~~~i 160 (378) .+ .|.++.+.+++.... ...+.|.++ .+.+++ T Consensus 189 r~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:96 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCchhhhHHHHHHH Confidence 00 122233333321000 011223222 222222 Q ss_pred HHH----Hh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHH Q lcl|Aclame:pro 161 QTK----LE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEI 231 (378) Q Consensus 161 ~~~----~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~ 231 (378) +.. .+ .+.+--++.-....+.+......+.-.-.+.... .-.+...-.+.+.+++-|+....... ...+ T Consensus 269 d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~ 346 (511) T protein:vir:96 269 DNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTV--YADSEGRETEGSVDGGYIYKQYDVQGTEAYK 346 (511) T ss_pred HHHHHHHHHHHHHhhCceeeeecCccCCchhhcccccccceeccccc--ccccccccCCCCcceeEEeecCCHHHHHHHH Confidence 221 11 1222222222122222221111110000000000 00001111234455555543322222 2345 Q ss_pred HHHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcccc Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~ 294 (378) +.+.+.|+..-++|..-. +|+.+... ....+...|.-.++.|...+..+--.. ..... T Consensus 347 ~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~-----~~~d~ 421 (511) T protein:vir:96 347 DRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSID-----ANKDF 421 (511) T ss_pred HHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-----ccccc Confidence 777889999888886433 23322211 123555666666666665554322100 00111 Q ss_pred ceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee------ecccceecccchhccCcc Q lcl|Aclame:pro 295 YYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI------ANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 295 ~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~------~~~n~~~~~~~~~~~~~~ 366 (378) ..+++.|. .-...|.++.++++.++ .|+++.-.+.+++++-+-|. -+.+- .................. T Consensus 422 ~~i~~~f~--~~~p~n~~e~~~~~~kl--~G~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 497 (511) T protein:vir:96 422 NTVRYVYN--RNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDD 497 (511) T ss_pred ccceEEeC--CCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCC Confidence 23455553 44567889999998887 58999988888886533111 11000 000000000000000000 Q ss_pred CCCCCCCCCCCC Q lcl|Aclame:pro 367 KDVTSTDETNNQ 378 (378) Q Consensus 367 ~~~~~~~e~~~e 378 (378) +++.++++..+| T Consensus 498 ~~~~~~~~~~~~ 509 (511) T protein:vir:96 498 EQDDDTKDTVDK 509 (511) T ss_pred CCCCcccccccc Confidence 111111111111 No 189 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=85.38 E-value=0.053 Score=27.57 Aligned_cols=347 Identities=9% Similarity=-0.016 Sum_probs=134.1 Q ss_pred CCccc---c------------ccccccccccCCccceee-----ccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEec Q lcl|Aclame:pro 1 MNLFG---K------------VVSFSRGKLNNDTQRVTA-----WQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYK 59 (378) Q Consensus 1 M~~f~---~------------~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~ 59 (378) +..+. + ..... -++.+....+.. ... ........+..-+|+..++-+-.-|+.+-... T Consensus 38 ~~~~~~l~~~i~~~~~~~~~r~~~l~-~yY~g~~~~i~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d 116 (501) T protein:vir:27 38 VNNWELLKNFINHHKLRQAPRIQELL-DYARGENHDVLQFGRRKDREMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDD 116 (501) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCccccccCccCccccccceeccchHHHHHHHHhhhhcccCeeEecCC Confidence 11110 0 00000 011111000000 000 00112334566778888888777776642211 Q ss_pred ccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eee-------c---- Q lcl|Aclame:pro 60 KSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLF-------A---- 126 (378) Q Consensus 60 ~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~-------~---- 126 (378) .. . .+.....+.+++.. | ........+..+++.+|.||+++ +.+..|++.- +-| + T Consensus 117 ~~---~---~~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v-y~ded~~~~i~~~~p~~~~~v~d~~~~ 184 (501) T protein:vir:27 117 ND---N---NSQNDDTIKRIGRI--N---DIDSHNRTLIRDLSQTGRAYEVI-YRNEYDETRIKRLNPLETFVIYDNSLE 184 (501) T ss_pred cc---c---hHHHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeEEEEE-EeCCCCceEEEEEccceeEEEecCCCC Confidence 10 0 00111223333321 3 34456777889999999999876 3454554321 111 0 Q ss_pred ---------------CCe----EEEeeeEEEEEcc------------ccC---------CccccchHH---HHHHHHHHH Q lcl|Aclame:pro 127 ---------------DDK----KEYKPEELVRLTS------------PFY---------INEDTSILD---NALASIQTK 163 (378) Q Consensus 127 ---------------~~~----~~~~~~dvih~r~------------~~~---------~~~~~~~~~---~~~~~i~~~ 163 (378) .+. ..|..+.+.+++. +++ ...+.|.++ .+.++++.. T Consensus 185 ~~~~~~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~ 264 (501) T protein:vir:27 185 DNSIAAVRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFLNNVDGIGDYETELYLIDLYDSA 264 (501) T ss_pred CceEEEEEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEecCCCCCCCchhhhHHHHHHHHHH Confidence 000 0122233332220 000 011233222 233333221 Q ss_pred ----Hh----cCCcceeeeeCCcC-CHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHHH Q lcl|Aclame:pro 164 ----LE----QGKLRGLLKINAFL-DIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDL 233 (378) Q Consensus 164 ----~~----~~~~~gil~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~ 233 (378) .+ .+.+--++.-.... .++.. ..++.. + ...-...+.....+.+.+++.++........ ..++. T Consensus 265 ~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~----~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 338 (501) T protein:vir:27 265 ESDTANHMSDMADAILAIYGDLALPKGMQA----SDMKRT-R-LMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTR 338 (501) T ss_pred HHHHHHHHHHhcCceeeeecCccCCcccch----hhhhhc-C-ceeecccccccCCCCCcceeeeeccCCHHHHHHHHHH Confidence 11 12222222211111 11111 111110 0 0000011111223344455555443322222 34577 Q ss_pred HHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccce Q lcl|Aclame:pro 234 IKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYY 296 (378) Q Consensus 234 ~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~ 296 (378) +.+.|+..-++|.... +|+.+... ....+...|.-+++.+...++..--. ....... T Consensus 339 l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~------~~~d~~~ 412 (501) T protein:vir:27 339 LNRDIHIFTNIPDMSDTNFSGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEF------KDFDESL 412 (501) T ss_pred HHHHHHHHhCCcccCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------ccccccc Confidence 7888999988886433 23222211 12345555666666665555432100 0011123 Q ss_pred eeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC--CCCeee------ecccceecccchhc-cCccC Q lcl|Aclame:pro 297 ERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE--GGDVYI------ANLNAVAVKNLSDL-QGSRK 367 (378) Q Consensus 297 ~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~--gGD~~~------~~~n~~~~~~~~~~-~~~~~ 367 (378) +++.| ...+..|.++.++++.++ .|+++..-+.+++++-.-| .-+++- -+.... +...+. ..... T Consensus 413 i~v~f--~~~~p~n~~e~ad~~~kl--~g~iS~et~l~~l~~v~D~~~E~eri~~E~~e~~~~~~~--~~~~~~~~~~~d 486 (501) T protein:vir:27 413 LKITF--TPNLPKSLNEQVSILTGL--GGQVSQETALSLSGLVESPNEELDKINKEVSEIDFKGYS--NDFNEHVGKYTD 486 (501) T ss_pred ceEEe--CCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhHhhhc--CccccccccccC Confidence 44555 455667889999998887 5889988888877553211 111100 000000 001111 11111 Q ss_pred CCCCCCCCCCC Q lcl|Aclame:pro 368 DVTSTDETNNQ 378 (378) Q Consensus 368 ~~~~~~e~~~e 378 (378) ..+++.+++.| T Consensus 487 ~~~~~~~d~~e 497 (501) T protein:vir:27 487 EVKETHTDDFE 497 (501) T ss_pred CCCCCcccccc Confidence 22222233333 No 190 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=84.70 E-value=0.058 Score=27.35 Aligned_cols=357 Identities=7% Similarity=-0.079 Sum_probs=121.5 Q ss_pred CC----------------------ccccccccc----------cccccCCc----cceeecccc-hhhhhhHHHHHHHHH Q lcl|Aclame:pro 1 MN----------------------LFGKVVSFS----------RGKLNNDT----QRVTAWQNE-AVEYTSAFVTNIHNK 43 (378) Q Consensus 1 M~----------------------~f~~~~~~~----------~~~~~~~~----~~~~~~~~~-~~~~~~~~v~~~i~~ 43 (378) |- +...+.... ..++.+.. .+..+-... .......+..-+|+. T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p~~~~~~~~v~n~~~~iVd~ 80 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIPPEYLRTATVLGWSAKAVDT 80 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccchhccccccHHHHHHhhccCcHHHHHHH Confidence 11 111000000 00111100 000000000 000011233445666 Q ss_pred HHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE-- Q lcl|Aclame:pro 44 IANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL-- 121 (378) Q Consensus 44 ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~-- 121 (378) +|+.+---. |+... + ...+..|.++++ -|... .....+..+.+++|.||+++ +.+..|++. T Consensus 81 ~a~rl~~~G---f~~~d-~-------~~~~~~l~~i~~--~N~ld---~~~~~~~~~a~iyG~af~~v-~~~~d~~~~~~ 143 (504) T protein:vir:99 81 LARRCNLES---FVWPD-G-------DYGSIGGPDVWD--ENFFA---TKANNAMVSSLIHGPAFLIN-TEGGAGEPDSL 143 (504) T ss_pred HHhhhccce---eeCCC-C-------ChhhHHHHHHHH--hcChh---hHHHHHHHHHHhhCceeEEE-ecCCCCCceeE Confidence 665442222 22111 0 112334666654 25432 34567788999999999875 344444321 Q ss_pred --EEeec------------------------CCe----EEEeeeE------------------------EEEEccccC-- Q lcl|Aclame:pro 122 --DLLFA------------------------DDK----KEYKPEE------------------------LVRLTSPFY-- 145 (378) Q Consensus 122 --~~~~~------------------------~~~----~~~~~~d------------------------vih~r~~~~-- 145 (378) .+-|. ++. ..|.++. |++|.|... T Consensus 144 I~~~sP~~~~~iyD~~~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~ 223 (504) T protein:vir:99 144 IHVKSAMQATGEWNSRRNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPRED 223 (504) T ss_pred EEEeccceeEEEEeCCCCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCc Confidence 11110 000 0122222 333332111 Q ss_pred Cccccc----hHHHHHHHHH----HHHhc----CCc-ceeeeeC-CcCCHHHHHHHHHHHHHHHHHhhcccccc-ceeEe Q lcl|Aclame:pro 146 INEDTS----ILDNALASIQ----TKLEQ----GKL-RGLLKIN-AFLDIDNTQEYREKALTTIKNMQEGSSYN-GLTPV 210 (378) Q Consensus 146 ~~~~~~----~~~~~~~~i~----~~~~~----~~~-~gil~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 210 (378) ...|.+ ++..+.+++. ..... +.| +.++-.. ....++. .+....|+..+.....-.... +.+.- T Consensus 224 ~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~~~~d-~~~~~~~~~~~~~i~~~~~~~~~~~~~ 302 (504) T protein:vir:99 224 RPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNFRNKD-GSMKPAWQIALARVFALPDDEDEPDAA 302 (504) T ss_pred cccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCcccccccc-ccccchhhhhhhhhhcCCCcccccccc Confidence 011222 2222333322 22211 122 2222111 1111111 111233443332222111110 11111 Q ss_pred cCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHhc--c---cchHHHHHHHHHHHHHH----HHHHHHHHHHhhc Q lcl|Aclame:pro 211 DNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILL--G---TASQEQQIYFYNSTIIP----LLIQLEKELTYKL 281 (378) Q Consensus 211 ~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~--~---~~~e~~~~~f~~~~l~P----~~~~ie~~l~~~L 281 (378) ..+.++.++....-.--.+.++.+..+|+.+=++|++.+| + ..+... ..+....|.- ..+.+.+.|.+.+ T Consensus 303 ~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~A-i~~~~~~L~~ka~~k~~~f~~~l~~~~ 381 (504) T protein:vir:99 303 RARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADA-YIASREDLIAEAEGATDDWSPAFRRSM 381 (504) T ss_pred CccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2235555554332111134567788899999999999885 1 122211 1122222222 1222222222211 Q ss_pred CChhHHhhh----ccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCC--H-HHHHHHhCCCCCCC---CCeeeecc Q lcl|Aclame:pro 282 ISTNRRRVV----KGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFT--Q-NQLLVKMGEQPIEG---GDVYIANL 351 (378) Q Consensus 282 l~~~~~~~g----~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t--~-NE~R~~~gl~p~~g---GD~~~~~~ 351 (378) -.--....+ ......+++.| ......+..+.++++.|+++.|... . .-+++++|+.|-+= -+....-. T Consensus 382 rla~~~~~~~~~~~~~~~~~~v~w--~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~ 459 (504) T protein:vir:99 382 IRALAIKNGLDRIPPEWKTIDSKF--RSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRAS 459 (504) T ss_pred HHHHHHhcCCCccccccccceeEe--cCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHh Confidence 000000000 01112233333 4566778899999999999988632 2 33456678765310 00000000 Q ss_pred cceecccchhc-----cCccCCCCCCCC-CCCC Q lcl|Aclame:pro 352 NAVAVKNLSDL-----QGSRKDVTSTDE-TNNQ 378 (378) Q Consensus 352 n~~~~~~~~~~-----~~~~~~~~~~~e-~~~e 378 (378) ....++.+... ..+..++.+..| -.++ T Consensus 460 ~~~~~~~l~~~~~~~~~~~~~~~~~~~e~a~~~ 492 (504) T protein:vir:99 460 SVSIIEALNRRQQEAATAGEDQDQGAGEPPANE 492 (504) T ss_pred hHHHHHHHhcccCCCCCCCCCCCcCCCCCCCCC Confidence 00000000000 000000000000 0000 No 191 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=84.46 E-value=0.06 Score=27.27 Aligned_cols=351 Identities=11% Similarity=0.018 Sum_probs=131.6 Q ss_pred CCccc--------cccccccccccCCccce---eeccc---chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFG--------KVVSFSRGKLNNDTQRV---TAWQN---EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~--------~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) ..|.. +.....+ ++.+.-.-+ ..... ........+..-.|+..++-+-+-|+.+- ..+ T Consensus 46 ~~~i~~~~~~~~~r~~~l~~-YY~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~---~~d---- 117 (512) T protein:vir:97 46 SKYIEHHMDYQRPRLKVLSD-YYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQCQ---DDD---- 117 (512) T ss_pred HHHHHHHHHhhHHHHHHHHH-HhcccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceec---cCC---- Confidence 00100 0000000 000000000 00000 00011223445667777777777776641 111 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE--ee-------c----------- Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL--LF-------A----------- 126 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~--~~-------~----------- 126 (378) ......|.++++. | ........+..+.+.+|.||+++. .+..|++.-. -| + T Consensus 118 ---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~i~G~ay~~vy-~ded~~~~i~~~~p~~~~~iyd~~~~~~~~~~v 188 (512) T protein:vir:97 118 ---KDVLEAIEAFNDL--N---DVESHNRSLGLDLSIYGKAYELMI-RNQDDETRLYKSDAMSTFVIYDNTIERNSIAGV 188 (512) T ss_pred ---hHHHHHHHHHHhh--c---CHHHHHHHHHHHHHhcCeEEEEEE-eCCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 0122345555532 2 334455667888999999998763 4544443211 11 0 Q ss_pred ---------C---Ce----EEEeeeEEEEEccc------------------cC---------CccccchH---HHHHHHH Q lcl|Aclame:pro 127 ---------D---DK----KEYKPEELVRLTSP------------------FY---------INEDTSIL---DNALASI 160 (378) Q Consensus 127 ---------~---~~----~~~~~~dvih~r~~------------------~~---------~~~~~~~~---~~~~~~i 160 (378) + .. ..|..+.|.+++.. +. ...+.|.+ ..+.+++ T Consensus 189 r~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e~v~~liDa~ 268 (512) T protein:vir:97 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (512) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCchhhhHHHHHHH Confidence 0 00 01223334443210 00 01122322 2223333 Q ss_pred HHH----Hh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHH Q lcl|Aclame:pro 161 QTK----LE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEI 231 (378) Q Consensus 161 ~~~----~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~ 231 (378) +.. .+ .+.+--++.-....+++.....++...-.+... ...+.......+.|.+++-++....... ...+ T Consensus 269 d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~ 347 (512) T protein:vir:97 269 DNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPT-VYENRDTGIETEGSVDGGYIYKQYDVQGTEAYK 347 (512) T ss_pred HHHHHHHHHHHHHhcCceeeeecCccCCchhhhhhhhccccccccc-chhhcccccCCCCCcceEEEeecCCHHHHHHHH Confidence 221 11 122222332222223322221111111000000 0001111122345555555554322222 2345 Q ss_pred HHHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcccc Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~ 294 (378) +.+.+.|+..-++|..-. +|+.+... ....+...|.-.++.|...++..--.. ..... T Consensus 348 ~~L~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~-----~~~d~ 422 (512) T protein:vir:97 348 DRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID-----ANKDF 422 (512) T ss_pred HHHHHHHHHHhCCcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----ccccc Confidence 677888888888886432 23333221 123445555555555555443221000 00011 Q ss_pred ceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCee------eecccceecccchhccCcc Q lcl|Aclame:pro 295 YYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVY------IANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 295 ~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~------~~~~n~~~~~~~~~~~~~~ 366 (378) ..+++.|. .-+-.|..+.++++.++ .|+++.--+++++++-+-|. -+.+ .+.....+........... T Consensus 423 ~~i~~~f~--~~~p~~~~e~~~~~~kl--~giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~ 498 (512) T protein:vir:97 423 NTVRYVYN--RNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDD 498 (512) T ss_pred ccceEEeC--CCCCcCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC Confidence 13455553 44567888889988887 48999988888876532111 1100 0011110110000000001 Q ss_pred CCCCCCCCCCCC Q lcl|Aclame:pro 367 KDVTSTDETNNQ 378 (378) Q Consensus 367 ~~~~~~~e~~~e 378 (378) +++..++++.+| T Consensus 499 ~~~~~~~~~~~~ 510 (512) T protein:vir:97 499 EQDDDTKDTVDK 510 (512) T ss_pred CCCCCccccccc Confidence 111111111111 No 192 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=84.02 E-value=0.064 Score=27.14 Aligned_cols=349 Identities=12% Similarity=0.027 Sum_probs=124.9 Q ss_pred CCccc--------cccc------cccccccCCcc----ceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEeccc Q lcl|Aclame:pro 1 MNLFG--------KVVS------FSRGKLNNDTQ----RVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKS 61 (378) Q Consensus 1 M~~f~--------~~~~------~~~~~~~~~~~----~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~ 61 (378) |.=.. +... ....++.+.-. +...... ........+...+|+..++.+--..| ....+ T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~---~~~~d 77 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGF---RISED 77 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHhhhhhhcchHHHHHHHHHhhhccCce---ecCCC Confidence 11000 0000 00001111000 0000000 00111123445566666665432222 21111 Q ss_pred ccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEe-----CCCceEEEEe--e-------c- Q lcl|Aclame:pro 62 DVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFD-----DNTGELLDLL--F-------A- 126 (378) Q Consensus 62 ~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~-----~~~g~~~~~~--~-------~- 126 (378) ......+.++++. |. .......+..+++++|.||+++... +..|.+.-.. | + T Consensus 78 --------~~~~~~l~~i~~~--N~---~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p~~~~~~~D~ 144 (480) T protein:vir:78 78 --------SEGLEELWNWWQA--ND---LDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESPLYMYAELDP 144 (480) T ss_pred --------chhHHHHHHHHHh--cC---HHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcccceEEEEcC Confidence 1123556676642 32 2456677888999999999765310 1223322100 0 0 Q ss_pred -----------------C-Ce----EEEeeeEEE-----------------------------EEcccc--CCccccchH Q lcl|Aclame:pro 127 -----------------D-DK----KEYKPEELV-----------------------------RLTSPF--YINEDTSIL 153 (378) Q Consensus 127 -----------------~-~~----~~~~~~dvi-----------------------------h~r~~~--~~~~~~~~~ 153 (378) + +. ..|.++.++ ||+|.. ....|.|-+ T Consensus 145 ~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i 224 (480) T protein:vir:78 145 RNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEI 224 (480) T ss_pred CCccceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeecccccCCccCcccc Confidence 0 00 012222333 333210 011122222 Q ss_pred ----HHHHHHHHH----HHh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEe-cCCceeeecc Q lcl|Aclame:pro 154 ----DNALASIQT----KLE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPV-DNKTEIVELK 220 (378) Q Consensus 154 ----~~~~~~i~~----~~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~g~~~~~l~ 220 (378) ..+.++++. ..+ .+.|.-++. ...+.+.........|.. . .+.++.+ +++.++.++. T Consensus 225 ~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~-G~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~ 294 (480) T protein:vir:78 225 SPELRKVTDAASRTLMNLQSASQILGTPLRVIS-GVTTDELTNDGENTTLDI----Y-----YGRILTLASEAAKISEFK 294 (480) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhh-cCCccccccccccchhhh----h-----hhhhccCCCCCceEEecC Confidence 222333322 111 122222221 111111110000111111 1 1223343 3456777766 Q ss_pred cchhhhhHHHHHHHHHHHHHHhCCCHHHhcccc----hHHHHHHHHHHHHHHHHHHHHHHHHhhc----CChhHHhh--h Q lcl|Aclame:pro 221 KDYSVLNKDEIDLIKSELLTGYFMNENILLGTA----SQEQQIYFYNSTIIPLLIQLEKELTYKL----ISTNRRRV--V 290 (378) Q Consensus 221 ~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~~----~e~~~~~f~~~~l~P~~~~ie~~l~~~L----l~~~~~~~--g 290 (378) ......-.+.++....+|+..=++|+..+++.. +.... .+....|.-.+...+..+...| -.--.... + T Consensus 295 ~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al-k~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~~ 373 (480) T protein:vir:78 295 AAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAI-IATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREV 373 (480) T ss_pred ccCHHHHHHHHHHHHHHHhcccCCChHHhccccCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc Confidence 433222245567777888888899999997542 22111 1111222222222222111111 00000000 0 Q ss_pred ccccceeeEEecchhhhhcCHHHHHHHHHHHHhCC--CCCHHHHHHHhCCCCCCC--CCeeeecccceecccc---hhcc Q lcl|Aclame:pro 291 KGNLYYERIIVDNQLFKFATLKELIDLYHENINGP--IFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNL---SDLQ 363 (378) Q Consensus 291 ~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G--~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~---~~~~ 363 (378) ......+++.| ......+..+.++.+.+++.+| +++..-+++.+|+.+-+- -++.--.....+++.+ .+.. T Consensus 374 ~~~~~~i~v~f--~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~ 451 (480) T protein:vir:78 374 TEEYTRLETVW--RDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQ 451 (480) T ss_pred cccceeeeEEe--cCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhcccccc Confidence 11112233444 3445567888898899988876 677777788888865321 1110000000000000 0000 Q ss_pred CccCCCCCC----CCCCCC Q lcl|Aclame:pro 364 GSRKDVTST----DETNNQ 378 (378) Q Consensus 364 ~~~~~~~~~----~e~~~e 378 (378) +......+. .+++++ T Consensus 452 ~~~~~~~~~~~~~~~~~~~ 470 (480) T protein:vir:78 452 ADATPKPTVTETKTETQTS 470 (480) T ss_pred CCCCCCCCCCCCCCccccc Confidence 000001111 112222 No 193 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=82.73 E-value=0.074 Score=26.77 Aligned_cols=343 Identities=8% Similarity=0.005 Sum_probs=131.6 Q ss_pred CCcccc--------ccccccccccCCccce-----eecc--cchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccc Q lcl|Aclame:pro 1 MNLFGK--------VVSFSRGKLNNDTQRV-----TAWQ--NEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGS 65 (378) Q Consensus 1 M~~f~~--------~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~ 65 (378) ..|..+ ..... -++.+.-..+ .... ........+...-.|+..+.-+-.-|+.+- .. + T Consensus 28 ~~li~~~~~~~~~r~~~l~-~YY~g~~~~i~~~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~G~p~~~~-~~-d---- 100 (506) T protein:vir:94 28 MKFITHHFNYQRPRLEMLD-DYYQGYNLKILDKQSRRHEDGKADHRATHSFAKYIADFQTSYSVGNPINVK-LP-D---- 100 (506) T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCCCccccccccccccccCCcceeecchHHHHHHHhhhhhcccCceee-cC-c---- Confidence 111000 00000 0111100000 0000 000112234556667777777766676531 11 0 Q ss_pred ccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE----------eecC-------- Q lcl|Aclame:pro 66 DTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL----------LFAD-------- 127 (378) Q Consensus 66 ~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~----------~~~~-------- 127 (378) ......|.++++. | ........+....+.+|.||+++. .+..|++.-. |.++ T Consensus 101 ----~~~~~~l~~~~~~--N---~~~~~~~~~~~~~~~~G~a~~~v~-~ded~~~~i~~~~p~~~~~v~dd~~~~~~~~~ 170 (506) T protein:vir:94 101 ----DGSNSGFDTFNKA--N---DVDAENYDLFLDMSRYGRAYEYVY-RGEDNEEHLAKLDPLDTFVIYSTDVDPKPIMA 170 (506) T ss_pred ----chHHHHHHHHHhc--c---CHhHHHHHHHHHHHhcCeEEEEEE-ecCCCeeEEEEEcccceEEEecCCCCCceEEE Confidence 1123446666542 3 333455667888899999998753 4444544321 1110 Q ss_pred -----------Ce--------EEEeeeEE-------------------------EEEccccCCccccchHHHHHHHHHH- Q lcl|Aclame:pro 128 -----------DK--------KEYKPEEL-------------------------VRLTSPFYINEDTSILDNALASIQT- 162 (378) Q Consensus 128 -----------~~--------~~~~~~dv-------------------------ih~r~~~~~~~~~~~~~~~~~~i~~- 162 (378) .. ..|.+..+ +++++.-.+...+.++..+.++++. T Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~sd~e~~~~liDa~d~~ 250 (506) T protein:vir:94 171 VRYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKNSNFRLGDFENVLPLIDLYDAA 250 (506) T ss_pred EEEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecCCCCCCCchhhhHHHHHHHHHH Confidence 00 00111222 2222111111111222222333322 Q ss_pred ---HHhc----CC----cceeeeeCCc-------C---CHHH---HHHHHHHHHHHHHHhhccccccceeEecC------ Q lcl|Aclame:pro 163 ---KLEQ----GK----LRGLLKINAF-------L---DIDN---TQEYREKALTTIKNMQEGSSYNGLTPVDN------ 212 (378) Q Consensus 163 ---~~~~----~~----~~gil~~~~~-------l---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------ 212 (378) ..+. +. +.|....... + +.+. .......+....+ ..+++.+++ T Consensus 251 ~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 323 (506) T protein:vir:94 251 QSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMK-------DANMLLLKSGMTVNG 323 (506) T ss_pred HHHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHhhhh-------hcCeeeecccccccC Confidence 1111 01 1111000000 0 0000 0000111111111 112333333 Q ss_pred ---Cceeeecccchhhhh-HHHHHHHHHHHHHHhCCCHHHh---cccchHH--------------HHHHHHHHHHHHHHH Q lcl|Aclame:pro 213 ---KTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENIL---LGTASQE--------------QQIYFYNSTIIPLLI 271 (378) Q Consensus 213 ---g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l---~~~~~e~--------------~~~~f~~~~l~P~~~ 271 (378) +.+++-|..+..... ...++.+.+.|+..-++|..-. +|+.+.. ....++...|...++ T Consensus 324 ~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~ 403 (506) T protein:vir:94 324 TQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQ 403 (506) T ss_pred ccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 334444443322222 2446778889999999986322 2222211 123456667777777 Q ss_pred HHHHHHHhhcCChhHHhhhc-cccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee Q lcl|Aclame:pro 272 QLEKELTYKLISTNRRRVVK-GNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI 348 (378) Q Consensus 272 ~ie~~l~~~Ll~~~~~~~g~-~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~ 348 (378) .|...++..= .+. .....+++.|. .-...|..+.++++.++ .|+++...+++++++-+-|. -+++- T Consensus 404 li~~~~~~~~-------~~~~~d~~~i~i~f~--~~~p~d~~e~a~~~~kl--~g~iS~et~~~~lp~v~d~~~E~~ri~ 472 (506) T protein:vir:94 404 IISDIENSIH-------GDWTFDPQELTFTFR--DNLPADNISQIKALVQA--GATLPQKYLYQQLPGVTNPQDIVDMMK 472 (506) T ss_pred HHHHHHHhcC-------CccccccccceEEeC--CCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHH Confidence 7666654310 000 11123455553 44667889999998887 58999999998875432111 00000 Q ss_pred ecc-cceec-ccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 349 ANL-NAVAV-KNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 349 ~~~-n~~~~-~~~~~~~~~~~~~~~~~e~~~e 378 (378) --. ...+. +........++.....++.+.| T Consensus 473 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 504 (506) T protein:vir:94 473 EQSANGDYSFDQNGVISNDGQTNTTATQTDEE 504 (506) T ss_pred HHHHHHhhcchhhcCCCcccCccccccccccC Confidence 000 00000 0000000011112233334444 No 194 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=82.34 E-value=0.078 Score=26.67 Aligned_cols=326 Identities=10% Similarity=-0.010 Sum_probs=126.4 Q ss_pred CCc---cccccccccccccCCccceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchH Q lcl|Aclame:pro 1 MNL---FGKVVSFSRGKLNNDTQRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDL 76 (378) Q Consensus 1 M~~---f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l 76 (378) ... ..+...+-.|.-.-.......-.. ......+.+..-+|+..++.+- +.-|... .+..+ T Consensus 17 ~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~---~~g~~~~------------d~~~l 81 (441) T protein:vir:80 17 QRLSSWHCCIEGYYEGSNRVRDLGVAIPPELQRVQTVVSWPGIAVDALEERLD---WLGWTNG------------DGYGL 81 (441) T ss_pred HHHHHHHHHHHHHHhcCCcchhcCcccchhhhhhhhhcchHHHHHHHHHhhhc---cccccCC------------ChHHH Confidence 110 001111111110000000000000 0011112334445555554441 1111110 12346 Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eee-------cC-----------------Ce- Q lcl|Aclame:pro 77 DEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLF-------AD-----------------DK- 129 (378) Q Consensus 77 ~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~-------~~-----------------~~- 129 (378) .++++. | +.......+..+++++|.||+++ +.+..|.+.- +-| +. .. T Consensus 82 ~~i~~~--n---~~~~~~~~~~~~~~~~G~a~~~v-~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~~ 155 (441) T protein:vir:80 82 DGVYAA--N---RLATASCDVHLDALIFGLSFVAI-IPHGDGTVSVRPQSPKNCTGKFSADGSRLDAGLVVQQTCDPEVV 155 (441) T ss_pred HHHHHh--c---CHHHHHHHHHHHHhhcCeeEEEE-EeCCCCceEEEEEccceEEEEEeCCCCceeEEEEEEEEecCceE Confidence 666642 3 34667777889999999999875 4565665421 111 00 00 Q ss_pred --EEEeeeE--------------------------EEEEccccCC--ccccch----HHHHHHHHHH----HHh----cC Q lcl|Aclame:pro 130 --KEYKPEE--------------------------LVRLTSPFYI--NEDTSI----LDNALASIQT----KLE----QG 167 (378) Q Consensus 130 --~~~~~~d--------------------------vih~r~~~~~--~~~~~~----~~~~~~~i~~----~~~----~~ 167 (378) ..|.++. |+||.|.... ..|.|- +..+.++++. ..+ .+ T Consensus 156 ~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~ 235 (441) T protein:vir:80 156 EAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFYA 235 (441) T ss_pred EEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhc Confidence 0112222 3344321111 112221 2223333322 111 22 Q ss_pred CcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCC-----ceeeecccchhhhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 168 KLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNK-----TEIVELKKDYSVLNKDEIDLIKSELLTGY 242 (378) Q Consensus 168 ~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-----~~~~~l~~~~~~~~~~~~~~~~~~Ia~~f 242 (378) .+.-++. ...+++... +.++. ..++++.++.+ .++.++.....+.-.+.++.....|+..- T Consensus 236 ~~~~~i~-G~~~~~~~~----~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 301 (441) T protein:vir:80 236 YPQRWVT-GVSADEFSQ----PGWVL---------SMASVWAVDKDDDGDTPNVGSFPVNSPTPYSDQMRLLAQLTAGEA 301 (441) T ss_pred Cceeeee-cCCcccccc----chhhh---------cccccccCCCCCCCCcceeEecCccchHHHHHHHHHHHHHHhccc Confidence 2322221 222222211 11211 12234444332 45555443222222344566678888889 Q ss_pred CCCHHHhcccc----hHHHH--------------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecch Q lcl|Aclame:pro 243 FMNENILLGTA----SQEQQ--------------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) Q Consensus 243 gVPp~~l~~~~----~e~~~--------------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~ 304 (378) ++|+..+++.. +.... ...+...|.-.++.+...++..--. ......+++.| . T Consensus 302 ~~p~~~~g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~-------~~~~~~i~~~f--~ 372 (441) T protein:vir:80 302 AVPERYFGFITSNPPSGEALAAEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDE-------ADFFGDVGLRW--R 372 (441) T ss_pred CCCHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-------cccceeeeEEe--C Confidence 99999886542 22111 1223333443333333332221100 00112334444 4 Q ss_pred hhhhcCHHHHHHHHHHHHhCCCCC--HHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 305 LFKFATLKELIDLYHENINGPIFT--QNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 305 ~l~~~d~~~~~~~~~~~~~~G~~t--~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .....+..+.++++.+++.+|+.. ..-+++.+|+.+-+- .++. . .......+.++ .........+| T Consensus 373 ~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l~~~~~e~-~~~~--~----e~~e~~~~~~~-~~~~~~~~~~~ 440 (441) T protein:vir:80 373 DASTPTRAATADAVTKLVGAGILPADSRTVLEMLGLDDVQV-EAVM--R----HRAESSDPLAV-LAGAISRQTNE 440 (441) T ss_pred CCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhCCCCHHHH-HHHH--H----HHHHHHHHHHH-Hhhhhhccccc Confidence 566788899999999999999864 445677777754321 0000 0 00000000000 01111222222 No 195 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=82.27 E-value=0.078 Score=26.65 Aligned_cols=349 Identities=15% Similarity=0.107 Sum_probs=144.0 Q ss_pred CCcccccc--ccc----cccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCc Q lcl|Aclame:pro 1 MNLFGKVV--SFS----RGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGS 74 (378) Q Consensus 1 M~~f~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~ 74 (378) |++|+..+ ... .-.++++...+....+-+.+|- ++.+-|--+-.-|-++|---|+...-....+ -+. T Consensus 51 ~~~~~ng~i~~v~~~~l~~~f~npd~~~~~i~~l~~y~y--i~~~~v~ql~~li~~lp~l~y~i~~~~~~k~-----~~~ 123 (525) T protein:vir:10 51 MDLCNNGKIKTVNLDTLQLWFNNPDKYINNIVNLLTYYY--IIDGNVFQLYDLIFSLPPLDYQIKVLKRDKD-----YKE 123 (525) T ss_pred HHhhcCCceeeeeHHHHHhhhcChHHHHHHHHHHHHHhh--hhcchHHHHHHHHHhcCCcceeehhhhhccc-----hhh Confidence 77775432 111 1122222221111000000110 0112233344455566644444332111110 011 Q ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE--------EEeec-------------------- Q lcl|Aclame:pro 75 DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL--------DLLFA-------------------- 126 (378) Q Consensus 75 ~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~--------~~~~~-------------------- 126 (378) .+ .+||..-..-.....+-+.+..++...|.- +=+ |-+....|+ +..|. T Consensus 124 ~~-s~~n~~l~k~i~hk~ltrdll~q~a~~gtl-ig~-wlg~~~~py~~vf~~~kyvfp~~r~~g~~v~vid~~~f~~~~ 200 (525) T protein:vir:10 124 DL-STINLYLEKKIQHKQLTRDLLVQLAHSGTL-IGT-WLGSKREPYFNVFNNLKYVFPYGRAKGKMVAVIDLQWFDEMS 200 (525) T ss_pred HH-HHHHHHHHHhHHHHHHHHHHHHHhhccCce-eEe-eecCCCCcchhhhhhhhhhccccccCCceEEEEehHHhhhhh Confidence 11 122221112223344555566666666642 211 112222221 11111 Q ss_pred ---------------------------C---C---eEEEeeeEEEEEcc-ccCCcc--ccchHHHHH------------- Q lcl|Aclame:pro 127 ---------------------------D---D---KKEYKPEELVRLTS-PFYINE--DTSILDNAL------------- 157 (378) Q Consensus 127 ---------------------------~---~---~~~~~~~dvih~r~-~~~~~~--~~~~~~~~~------------- 157 (378) + . -+.+|.+.++|+|- .+..++ |.+-.-.++ T Consensus 201 ~~~r~~~~~~lsp~i~~~~y~~~~~~~~~~~~~~r~i~LP~e~t~~lr~~tl~rnqrlG~s~vtp~l~dI~hk~klrd~E 280 (525) T protein:vir:10 201 ELERKLTFENLSPLITENKYKKWKEYNGENEDALRYIMLPISKTLVARIHTLSRNQRLGIPYGTQTLFDIQHKQKLRDLE 280 (525) T ss_pred HHHHHHHHHhhchhhhhhhhhHHhhcccccchhheeeecccceeEEeeecccccCcccCcchhhhHHHHHHHHHHHHHHH Confidence 0 0 12356788999983 222222 333222222 Q ss_pred HHHHHHHhcCCcceeeeeCC------cCCHHHHHHHHHHHHHHHHHhhccccccceeEe--cC--Cceeeecccchhhhh Q lcl|Aclame:pro 158 ASIQTKLEQGKLRGLLKINA------FLDIDNTQEYREKALTTIKNMQEGSSYNGLTPV--DN--KTEIVELKKDYSVLN 227 (378) Q Consensus 158 ~~i~~~~~~~~~~gil~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~--g~~~~~l~~~~~~~~ 227 (378) ++|...+ ..+-.+++..+ .+.+...++.-+..++.+..-.. .. .|++++ +. .++|-++..-..-++ T Consensus 281 qsIA~ki--i~a~avLk~gg~~gn~mk~p~~~kqkil~gVk~aleK~~k-dK-~Gi~vi~~Pdfa~~efp~ik~~~~glD 356 (525) T protein:vir:10 281 QSIADKI--IKAMAVLKFRGKDDNDSKVKESAKRKVLAGVKRALEKGVK-DK-NGIACIAMPDFATFEFPEIKNGDKTLD 356 (525) T ss_pred HHHHHHh--hhhheeeeeccccCccccCchHHHHHHHHHHHHHHhcccc-cc-cCeEEEeccceeecccccccCcccCCC Confidence 2222222 12233444433 34455555666667666653221 22 244442 32 334444443233444 Q ss_pred HHHHHHHHHHHHHHhCCCHHHhcccch-----HHHHHHHHHHHHHHHHHHHHHHHHhhcC----ChhHHhhhccccceee Q lcl|Aclame:pro 228 KDEIDLIKSELLTGYFMNENILLGTAS-----QEQQIYFYNSTIIPLLIQLEKELTYKLI----STNRRRVVKGNLYYER 298 (378) Q Consensus 228 ~~~~~~~~~~Ia~~fgVPp~~l~~~~~-----e~~~~~f~~~~l~P~~~~ie~~l~~~Ll----~~~~~~~g~~~~~~~~ 298 (378) -...+...++|-.++|++..+++|+.. .-.+.-||+. |.-+++.||+..+ +|| +.. .+..++ T Consensus 357 g~K~d~I~~DI~~A~GlS~sL~nGdggNyAtaslnld~fykk-igVm~e~Iee~y~-kL~d~Vl~~~-----k~~nyi-- 427 (525) T protein:vir:10 357 PKKYDSIDNDITNATGISQVLTNGTKGNYASAKLNLDVFYKK-IGVMLEIIEEIYN-QLIDIILGEE-----KGCNYI-- 427 (525) T ss_pred chhhhhhhhhhhhhhccceeeecCCCCceeeeeeeHHHHHHH-HHHHHHHHHHHHH-HHHhhhcCcc-----cCcceE-- Confidence 445567788999999999999987532 2234557765 7778888885554 443 221 122222 Q ss_pred EEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC------------C-Ceeeecccceec-ccchhccC Q lcl|Aclame:pro 299 IIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG------------G-DVYIANLNAVAV-KNLSDLQG 364 (378) Q Consensus 299 ~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g------------G-D~~~~~~n~~~~-~~~~~~~~ 364 (378) |.+| .-...+.+.+.+.+-++...||.. --+....|+.--|. . ++..-|.+...+ +..+..-| T Consensus 428 fnyd--kd~pi~~kkk~d~LIkL~d~g~s~-k~vldl~gis~e~y~E~s~yEtE~lkl~EKi~pp~~~~v~SGk~~n~iG 504 (525) T protein:vir:10 428 FQYN--KDTPIEREKKLDTLIKLEAQGYSA-KYVLDILGISSEEYFEESIYEIEKLKLREKIMPPLNTNVLSGKDGNDIG 504 (525) T ss_pred EecC--CCchhhhhhhhhhhhhhhccchhh-hhhhhhhccCcchHHHHHHHHHHHHHHhhhccccccceeeecccccccc Confidence 3333 334456788888888888888742 22223333321111 1 222222222111 11111001 Q ss_pred ccCCCCCCCCCCCC Q lcl|Aclame:pro 365 SRKDVTSTDETNNQ 378 (378) Q Consensus 365 ~~~~~~~~~e~~~e 378 (378) . .+..++++++ T Consensus 505 -~--P~~dd~~~~d 515 (525) T protein:vir:10 505 -S--PKLDDSDSSD 515 (525) T ss_pred -C--CccCCCcchh Confidence 0 0012222222 No 196 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=80.69 E-value=0.093 Score=26.25 Aligned_cols=351 Identities=10% Similarity=-0.007 Sum_probs=129.0 Q ss_pred CCcccccccc-------ccccccCCccce---eeccc---chhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSF-------SRGKLNNDTQRV---TAWQN---EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) Q Consensus 1 M~~f~~~~~~-------~~~~~~~~~~~~---~~~~~---~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~ 67 (378) ..|..+.... ..-++.+.-.-. ..... ...........-.|+..++-+-+-|+.+ .. .+ T Consensus 46 ~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~-~~--~d----- 117 (511) T protein:vir:99 46 SKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQY-QD--DD----- 117 (511) T ss_pred HHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccccCcceeecchHHHHHHHHHhhhcccCcee-ec--Cc----- Confidence 1111110000 000010000000 00000 0001112334555677777776777664 11 10 Q ss_pred ceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE----------eecC---------- Q lcl|Aclame:pro 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL----------LFAD---------- 127 (378) Q Consensus 68 ~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~----------~~~~---------- 127 (378) ......|.++++. | ........+...++.+|.||+++. .+..|++.-. |-+. T Consensus 118 --~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~i~G~a~~~vy-~ded~~~~i~~~~p~~~~~vyd~~~~~~~~~~vr 189 (511) T protein:vir:99 118 --KDVLEAIEAFNDL--N---DVESHNRSLGLDLSIYGKAYELMI-RNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVR 189 (511) T ss_pred --hHHHHHHHHHHhh--c---CHhHHHHHHHHHHHhcCeeEEEEE-eCCCCceEEEEEccceeEEEEcCCCCCceEEEEE Confidence 0122445555542 3 234455667889999999998763 4444443211 1000 Q ss_pred ------------CeE----EEeeeEEEEEccccC---------------------------CccccchH---HHHHHHHH Q lcl|Aclame:pro 128 ------------DKK----EYKPEELVRLTSPFY---------------------------INEDTSIL---DNALASIQ 161 (378) Q Consensus 128 ------------~~~----~~~~~dvih~r~~~~---------------------------~~~~~~~~---~~~~~~i~ 161 (378) ..+ .|.++.+.+++.... ...+.|.+ ..+.++++ T Consensus 190 ~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d 269 (511) T protein:vir:99 190 YLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYD 269 (511) T ss_pred EEEeeecccCccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCchhhhHHHHHHHH Confidence 000 123333444321000 01122222 22233332 Q ss_pred HHH----h----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhhH-HHHH Q lcl|Aclame:pro 162 TKL----E----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEID 232 (378) Q Consensus 162 ~~~----~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~ 232 (378) ..+ + .+.+--++.-....+++......+.-.-..... . .-.+.....+.|.+++.|+........ ..++ T Consensus 270 ~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~ 347 (511) T protein:vir:99 270 NAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPT-V-YADSEGRETEGSVDGGYIYKQYDVQGTEAYKD 347 (511) T ss_pred HHHHHHHHHHHHhhchhhhhccCcccCchhhcccccccceecccc-c-ccccccccCCCCcceeEEeecCCHHHHHHHHH Confidence 211 1 112211221111122221111111000000000 0 000011123445555555443222222 3457 Q ss_pred HHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccc Q lcl|Aclame:pro 233 LIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLY 295 (378) Q Consensus 233 ~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~ 295 (378) .+.+.|+..-++|.... +|+.+... ....+...|.-.++.|...+..+--.. ...... T Consensus 348 ~L~~~I~~~s~~P~~~~~~~~gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~-----~~~~~~ 422 (511) T protein:vir:99 348 RLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID-----VSKDFN 422 (511) T ss_pred HHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----cccccc Confidence 77888999888886433 23333221 123445555555555554443321000 000111 Q ss_pred eeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee------ecccceecccchhc-cCcc Q lcl|Aclame:pro 296 YERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI------ANLNAVAVKNLSDL-QGSR 366 (378) Q Consensus 296 ~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~------~~~n~~~~~~~~~~-~~~~ 366 (378) .+++.|. .-...|.++.++.+.++. |+++.--+++++++-+-|. -+.+- ++....+....... ...+ T Consensus 423 ~i~i~f~--~~~p~n~~e~~~~~~kl~--GiiS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 498 (511) T protein:vir:99 423 TVRYVYN--RNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKNMYQDPRNINDDE 498 (511) T ss_pred cceEEeC--CCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCC Confidence 2345553 445578899999998884 8899988888875432110 00000 00000010100000 1111 Q ss_pred CCCC-CCCCCCCC Q lcl|Aclame:pro 367 KDVT-STDETNNQ 378 (378) Q Consensus 367 ~~~~-~~~e~~~e 378 (378) .++. +..++.+| T Consensus 499 ~~~~~~~~~d~~e 511 (511) T protein:vir:99 499 QDDSTKDSIDKKE 511 (511) T ss_pred CCCCCcCcccccC Confidence 1111 11112222 No 197 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=80.30 E-value=0.096 Score=26.16 Aligned_cols=352 Identities=11% Similarity=0.023 Sum_probs=120.7 Q ss_pred CCccccccccccccccCCcc-----ceeec----ccc-----------------------hhhhhhHHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQ-----RVTAW----QNE-----------------------AVEYTSAFVTNIHNKIANEI 48 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~-----~~~~~----~~~-----------------------~~~~~~~~v~~~i~~ia~~i 48 (378) ||+|..++.|-..-+.+.+. .+..+ .+. ....+.+.-..+++.+|+-| T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCccccccccCChHHHHHHHHHHhh Confidence 99999887653322221111 11000 000 00111122344566666666 Q ss_pred ccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE----- Q lcl|Aclame:pro 49 TKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL----- 123 (378) Q Consensus 49 a~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~----- 123 (378) ..=|..+- ....+...+ +.....|.++|.. | ....-....+.+.+..|.+++.+.+.++..++-.. T Consensus 81 ~~e~~~i~-v~~~~~~d~---e~~~~~l~~il~~--n---~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~i~~v~ad~~ 151 (518) T protein:vir:78 81 SGKPLSID-VTGVNGSKD---ENLTKQLKEALRI--D---NFDSKSVKIVELAGGSGVSAVKINILNGRPSISVHSSSQF 151 (518) T ss_pred cCCCceEE-ecCccccCc---HHHHHHHHHHHHh--c---cHHHHHHHHHHHhhccCceEEEEEEECCeeEEEEEcCCee Confidence 54443321 111111000 1112234444432 1 12233344556666677776655554432222211 Q ss_pred ee---cCCeE--EE----ee---eEEE---------------------EEccccCCcc-c----cc--hHHHHHHHHHH- Q lcl|Aclame:pro 124 LF---ADDKK--EY----KP---EELV---------------------RLTSPFYINE-D----TS--ILDNALASIQT- 162 (378) Q Consensus 124 ~~---~~~~~--~~----~~---~dvi---------------------h~r~~~~~~~-~----~~--~~~~~~~~i~~- 162 (378) +| ++.-. .| .. ..+. ++++-++... + .+ ++...+..+.. T Consensus 152 ~P~~~~g~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~ 231 (518) T protein:vir:78 152 WIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHT 231 (518) T ss_pred EEEeecCcEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCccccccccccccccccccccc Confidence 11 11000 00 00 0010 0111110000 0 00 00000100000 Q ss_pred -------HH-hcCCcceeeeeCC------------cCCH-----H---HHHHHHHHHHHHHHHhhccccccceeE----- Q lcl|Aclame:pro 163 -------KL-EQGKLRGLLKINA------------FLDI-----D---NTQEYREKALTTIKNMQEGSSYNGLTP----- 209 (378) Q Consensus 163 -------~~-~~~~~~gil~~~~------------~l~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 209 (378) .. .+..+..+...+. -+|. + +.++.-.+|...++ .+.. .+.+ T Consensus 232 ~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~---~g~~--~i~v~~~~l 306 (518) T protein:vir:78 232 NDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGE---KTKT--KIAASERMF 306 (518) T ss_pred ccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHH---hCCc--eeeechhHh Confidence 00 0111111111110 0110 1 11111222222221 1111 1111 Q ss_pred --------------ecC--------------Cce----eeecccchhhhh-HHHHHHHHHHHHHHhCCCHHHhcc----- Q lcl|Aclame:pro 210 --------------VDN--------------KTE----IVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG----- 251 (378) Q Consensus 210 --------------l~~--------------g~~----~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~~----- 251 (378) ++. |.+ ++.++..-.+-+ .+.++.+.++|....|++|..++. T Consensus 307 ~~~~~~~~~~~~~~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~~~~~ 386 (518) T protein:vir:78 307 RKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREV 386 (518) T ss_pred ccCCCCCCCccccccCCCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCcccccc Confidence 111 111 222222222222 233566678888999999988852 Q ss_pred cchHHHH------------HHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHH Q lcl|Aclame:pro 252 TASQEQQ------------IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYH 319 (378) Q Consensus 252 ~~~e~~~------------~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~ 319 (378) |++|.+. ...++.+|.-++..|.+-+........ .......+.+.+ +++.....|.++.++.+. T Consensus 387 TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~--~~~~~~~~~v~i--~f~D~i~~D~~~~~~~~~ 462 (518) T protein:vir:78 387 KATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKE--KAIMRDEIRVII--EFPDPMSVNLNELSSTLN 462 (518) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--cccCCCceeEEE--EeCCCCCCCHHHHHHHHH Confidence 2233211 123333333333333222221100000 000111233444 445567789999999999 Q ss_pred HHHhCCCCCHHHHHHHhCCCCCCC--CCeeee---cccceecccchhccCccCCCCCC Q lcl|Aclame:pro 320 ENINGPIFTQNQLLVKMGEQPIEG--GDVYIA---NLNAVAVKNLSDLQGSRKDVTST 372 (378) Q Consensus 320 ~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~---~~n~~~~~~~~~~~~~~~~~~~~ 372 (378) +++.+|+|++.++-+++... ..+ -++-+. .-+.. .........+.-+.++| T Consensus 463 ~~v~aGimS~e~~i~~~~~~-~~deea~~e~~ri~~E~~~-~~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 463 NMNSALAMSVEEKVKLIHPK-WEDEEIQAEVKRIYLENAI-GEVPDPEAIGGMETKGG 518 (518) T ss_pred HHHhcCCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHhcc-cCCCCCccccCCCCCCC Confidence 99999999999966655321 111 111000 00000 00000001111111111 No 198 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=78.73 E-value=0.11 Score=25.81 Aligned_cols=330 Identities=11% Similarity=-0.014 Sum_probs=130.3 Q ss_pred CCcccccccc------ccccccCCccceee---cc-cchhhhhhHHHHHHHHHHHhhhccCceEEEEeccccccccccee Q lcl|Aclame:pro 1 MNLFGKVVSF------SRGKLNNDTQRVTA---WQ-NEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLIS 70 (378) Q Consensus 1 M~~f~~~~~~------~~~~~~~~~~~~~~---~~-~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~ 70 (378) ..|.++.... ..-++.+.-..... .. ........+....+|+..++-+-.-|+.+- .. + + T Consensus 7 ~~~i~~~~~~~~r~~~l~~yy~g~~~il~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~-~~-~--------~ 76 (429) T protein:vir:98 7 SELIQKHRSFNLSYSAYKQLYEGDHAILQQKQKEQYKPDNRLVVNFAKYIVDTFNGYFIGVPVQTS-HE-N--------K 76 (429) T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcceeecchHHHHHHHHhhhhcccCceee-cC-C--------h Confidence 1111110000 00000000000000 00 000112345567778888888777776531 11 0 0 Q ss_pred ccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e--------cC------------- Q lcl|Aclame:pro 71 MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F--------AD------------- 127 (378) Q Consensus 71 ~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~--------~~------------- 127 (378) .....+.++++. | ........+..+.+.+|.||+++. .+..|++.--+ | +. T Consensus 77 ~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~-~d~~g~~~~~~~~p~~~~~v~dd~~~~~~~~~i~~~~ 150 (429) T protein:vir:98 77 QVSNYLELLDGY--N---DQDDNNAELSKICSIYGHGYELVF-NDENAEAGITYLTPLEAFIVYDDSIRQKPLFAVRYFY 150 (429) T ss_pred HHHHHHHHHHhh--c---CHhHHHHHHHHHHhhcCeEEEEEE-ecCCCcEEEEEEcccceEEEEeCCCCCceEEEEEEEE Confidence 122345555542 3 233456777889999999998764 45556543211 1 00 Q ss_pred --CeE----EEeeeE-------------------------EEEEccccCCccccchHHHHHHHHHH----HHh----cCC Q lcl|Aclame:pro 128 --DKK----EYKPEE-------------------------LVRLTSPFYINEDTSILDNALASIQT----KLE----QGK 168 (378) Q Consensus 128 --~~~----~~~~~d-------------------------vih~r~~~~~~~~~~~~~~~~~~i~~----~~~----~~~ 168 (378) +.. .+..+. |+++++...+...+.++..+.++++. ..+ .+. T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~ 230 (429) T protein:vir:98 151 NKGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVENEERQSLLASVVTLINAFNKAISEKANDVEYFAD 230 (429) T ss_pred ecCceEEEEEEeCceEEEEEecCCceEecccccccCCccceEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 000 011111 23333211111112223333333322 111 222 Q ss_pred cceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecC----Cceeeecccchhhh-hHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 169 LRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDN----KTEIVELKKDYSVL-NKDEIDLIKSELLTGYF 243 (378) Q Consensus 169 ~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~~~~~l~~~~~~~-~~~~~~~~~~~Ia~~fg 243 (378) |--++ ....++++... .+ . ..+++.++. +.+.+.+..+...- ....++.+.+.|+..-+ T Consensus 231 p~~~i-~g~~~~~~~~~----~~----~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~ 294 (429) T protein:vir:98 231 AYLKI-LGAELDDETLK----SL----R-------DTRIINLKDTDAQQLTVEFLQKPDADATQEHLLDRLENLIFRTAM 294 (429) T ss_pred ceeee-ecCCCCcchhh----hH----h-------hCceeeccCCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 33333 22333332211 11 1 112333321 22334443322111 12345778889988888 Q ss_pred CCHHHhc--ccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhhh Q lcl|Aclame:pro 244 MNENILL--GTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFK 307 (378) Q Consensus 244 VPp~~l~--~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~ 307 (378) +|..-.. |+.+... ....+...|.-.++.+..-++..- +......+++.| ...+ T Consensus 295 ~p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~--------~~~d~~~i~v~f--~~~~ 364 (429) T protein:vir:98 295 VANISDESFGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKI--------GPKDWIGIKYKF--TRNL 364 (429) T ss_pred ccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CccccccceEEe--CCCC Confidence 8753221 2222111 123444455555555544443221 111112244555 4556 Q ss_pred hcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCC Q lcl|Aclame:pro 308 FATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNN 377 (378) Q Consensus 308 ~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~ 377 (378) ..|..+.++++.++ .|+++..-+.++++.-+-| +.-+-...--. +...+.+.+.-+.++++++-+ T Consensus 365 p~~~~~~a~~~~kl--~g~is~et~~~~l~~v~d~--~~E~~ri~~E~-~~~~~~~~~~~~~~~~~~~~~ 429 (429) T protein:vir:98 365 PANLLEESQIAGNL--AGIVSEETQVGVLSIVENP--QKEIERKNSDK-STLISRQAGGLNGQNTTTILE 429 (429) T ss_pred CcCHHHHHHHHHHH--hccCchHHHHHhCCCCCCH--HHHHHHHHHHH-HHHHHHHHhhhcCCCCCCCCC Confidence 77899999999887 6899987788877653311 10000000000 000011111111111111111 No 199 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=76.61 E-value=0.13 Score=25.38 Aligned_cols=347 Identities=11% Similarity=0.007 Sum_probs=131.3 Q ss_pred CCcccc--------ccccccccccCCcc---ceeeccc---chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGK--------VVSFSRGKLNNDTQ---RVTAWQN---EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~--------~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) ..|..+ +....+ ++.+.-. ....... .............|+..++-+-.-|+.+ . ..+ T Consensus 46 ~~~i~~~~~~~~~r~~~l~~-Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~-~--~~d---- 117 (511) T protein:vir:93 46 SKYIEHHMDYQRPRLKVLSD-YYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQY-Q--DDD---- 117 (511) T ss_pred HHHHHHHHHhhHHHHHHHHH-HhcccCccccccCcCcccccCcceeecchHHHHHHHHhhhhcccCeee-c--cCC---- Confidence 111110 000000 0000000 0000000 0001122344556777777777777664 1 110 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE--ee--------cC--------- Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL--LF--------AD--------- 127 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~--~~--------~~--------- 127 (378) ......|.++++. | ........+...++.+|.||+++. .+..|++.-. -| +. T Consensus 118 ---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~ay~~vy-~de~~~~~i~~~~p~~~~~vydd~~~~~~~~~v 188 (511) T protein:vir:93 118 ---KDVLEVIEAFNDL--N---DVESHNRSLGLDLSIYGKAYELMI-RNQDDETRLYKSDAMSTFVIYDNTIERNSIAGV 188 (511) T ss_pred ---hHHHHHHHHHHhh--c---CHhHHHHHHHHHHHhcCeeEEEEE-eCCCCceEEEEEccceeEEEEcCCCCCceEEEE Confidence 0122345555432 2 344566778889999999998763 4545544211 11 00 Q ss_pred -------------CeE----EEeeeEEEEEccccC---------------------------CccccchH---HHHHHHH Q lcl|Aclame:pro 128 -------------DKK----EYKPEELVRLTSPFY---------------------------INEDTSIL---DNALASI 160 (378) Q Consensus 128 -------------~~~----~~~~~dvih~r~~~~---------------------------~~~~~~~~---~~~~~~i 160 (378) ..+ .|.++.+.+++.... ...+.|.+ ..+.+++ T Consensus 189 r~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:93 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCchhhHHHHHHHH Confidence 000 123333434321000 01122222 2222332 Q ss_pred HHHH----h----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHH Q lcl|Aclame:pro 161 QTKL----E----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEI 231 (378) Q Consensus 161 ~~~~----~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~ 231 (378) +..+ + .+.+--++.-....+++.....++...-..... ..-.+...-.+.+.+++-|+.....-. ...+ T Consensus 269 d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 346 (511) T protein:vir:93 269 DNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPT--VYADSEGRETEGSVDGGYIYKQYDVQGTEAYK 346 (511) T ss_pred HHHHHHHHHHHHHhhCcceeeecCcccCchhhcccccccceecccc--cccccccccCCCCcceeEEeecCCHHHHHHHH Confidence 2211 1 122222222111122222111111000000000 000000112344555555543322222 2345 Q ss_pred HHHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcccc Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~ 294 (378) +.+.+.|+..-++|..-. +|+.+... ....+..+|.-.++.|...++.+--.. ..... T Consensus 347 ~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~-----~~~d~ 421 (511) T protein:vir:93 347 DRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSID-----ANKDF 421 (511) T ss_pred HHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-----ccccc Confidence 677888998888886432 23322211 123556666666666665554322110 00011 Q ss_pred ceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee------ecccceecccchhccCcc Q lcl|Aclame:pro 295 YYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI------ANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 295 ~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~------~~~n~~~~~~~~~~~~~~ 366 (378) ..+++.| ...+..|.++.++++.++ .|+++.--+++++++-+-|. -+.+- +.....+.. ...++. T Consensus 422 ~~i~~~f--~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~---~~~~~~ 494 (511) T protein:vir:93 422 NTVRYVY--NRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIY---KDPRDI 494 (511) T ss_pred ccceEEe--CCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcc---cCCCCC Confidence 1245555 345667889999998888 58999988888876533111 11000 000000000 001111 Q ss_pred CCCCCCCC-----CCCC Q lcl|Aclame:pro 367 KDVTSTDE-----TNNQ 378 (378) Q Consensus 367 ~~~~~~~e-----~~~e 378 (378) .+.++.++ +.+| T Consensus 495 ~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:93 495 NDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCcccccccccC Confidence 11111111 1111 No 200 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=76.43 E-value=0.14 Score=25.34 Aligned_cols=331 Identities=9% Similarity=0.034 Sum_probs=127.8 Q ss_pred CCccc-------c---cccccccccc---CCccceee---ccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLFG-------K---VVSFSRGKLN---NDTQRVTA---WQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f~-------~---~~~~~~~~~~---~~~~~~~~---~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) ..+.. + ...+-.+.-. ........ ... ............+|+..+.-+-.-|+.+ ... + T Consensus 32 ~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~-~~~-~-- 107 (478) T protein:vir:10 32 LRLVREHKENIDNITMGERYYNHHPDILDAPPKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPVTF-GVD-N-- 107 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhccccccccccccccccccceeccchHHHHHHHHHhhhccCCeee-ecC-C-- Confidence 00000 0 0001011000 00000000 000 0011223445667777777777777664 111 1 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE--eec--------C------ Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL--LFA--------D------ 127 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~--~~~--------~------ 127 (378) + .....|..+++ | ........++...+.+|.||+++. .+..|++.-. -|. + T Consensus 108 --d----~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~~~-~d~~g~~~~~~~~p~~~~~i~d~~~~~~~~ 174 (478) T protein:vir:10 108 --D----KALKQIQHTLN---H---KWDDKLVDILTAASNKGIEWVQPY-VDEEGEFKTFRVPAEQAVPIWTNKERDELQ 174 (478) T ss_pred --h----HHHHHHHHHHh---c---CHHHHHHHHHHHHHhcCeEEEEEE-ecCCCeeEEEEEcccceEEEEcCCCCCceE Confidence 0 11233455543 2 345555667889999999997753 4455554321 110 0 Q ss_pred ---------C---eEEEeeeEEEE---------------------------------------EccccCCccccchHHHH Q lcl|Aclame:pro 128 ---------D---KKEYKPEELVR---------------------------------------LTSPFYINEDTSILDNA 156 (378) Q Consensus 128 ---------~---~~~~~~~dvih---------------------------------------~r~~~~~~~~~~~~~~~ 156 (378) + ...|.++.+.| |++...+...+..+..+ T Consensus 175 ~~v~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n~~~g~sd~~~v~~l 254 (478) T protein:vir:10 175 AFIRVYELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTI 254 (478) T ss_pred EEEEEEEecCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEeccCCCCCCcHHHHHHH Confidence 0 00112223322 22211111112222233 Q ss_pred HHHHHHHH----h----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEe--cCCceeeecccchhhh Q lcl|Aclame:pro 157 LASIQTKL----E----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPV--DNKTEIVELKKDYSVL 226 (378) Q Consensus 157 ~~~i~~~~----~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~g~~~~~l~~~~~~~ 226 (378) .++++..+ + .+.|.-++ ......+. ....... + ..+++.+ +.|.+.+.+....... T Consensus 255 iDa~~~~~S~~~~~~~~~~~p~~~~-~g~~~~~~--~~~~~~~----~-------~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (478) T protein:vir:10 255 IDALDKRLSDTQNTFDESVELIYIL-KGYEGEDM--KDFMHNL----K-------YYKAISVAGESGSGVDTIKVEVPID 320 (478) T ss_pred HHHHHHHHHHHHHHHHHhhCceeee-ecCCcccc--chhhhhh----h-------hcceEEecCCCCCcceEEeecCChH Confidence 33333211 1 12232222 11111111 1111111 1 1123333 2333443343222112 Q ss_pred h-HHHHHHHHHHHHHHhCCCHHH---hcccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHh Q lcl|Aclame:pro 227 N-KDEIDLIKSELLTGYFMNENI---LLGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRR 288 (378) Q Consensus 227 ~-~~~~~~~~~~Ia~~fgVPp~~---l~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~ 288 (378) . ...++.+.+.|...-++|..- ++|+.+... ....+..+|..+++.|...+... T Consensus 321 ~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~-------- 392 (478) T protein:vir:10 321 SVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLD-------- 392 (478) T ss_pred HHHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------- Confidence 2 244577778888888887532 223323211 12344555555555554433211 Q ss_pred hhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecccceecccchhccCcc Q lcl|Aclame:pro 289 VVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 289 ~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~~~~~~ 366 (378) .....+++.|. .-.-.|..+.++++.++ +|+++...+++++++-+-+. .+.+--- +-.......+...+. T Consensus 393 ---~~~~~i~i~f~--~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~D~~~E~~ri~~E-~~~~~~~~~~~~~~~ 464 (478) T protein:vir:10 393 ---VKVQDIEITFN--FNVMVNELENSQIAMNS--TGLLSKETILSNHAWVEDPVAEMERIEQE-NIELNQQLPDIEEGL 464 (478) T ss_pred ---cccccceEEec--CCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHHHH-HHHHHhhcccccccc Confidence 12223455553 34557889999998887 78999988898887632111 1111000 000000011111111 Q ss_pred CCC-CCCCCCCCC Q lcl|Aclame:pro 367 KDV-TSTDETNNQ 378 (378) Q Consensus 367 ~~~-~~~~e~~~e 378 (378) .++ +..+++|+. T Consensus 465 ~~~~~~~~~~~~~ 477 (478) T protein:vir:10 465 NGEQQRQSENNQP 477 (478) T ss_pred CCCCCCCCCCCCC Confidence 111 122222222 No 201 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=74.29 E-value=0.16 Score=24.95 Aligned_cols=337 Identities=9% Similarity=-0.014 Sum_probs=132.7 Q ss_pred CCc---cccccccccccccCCccc-eeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchH Q lcl|Aclame:pro 1 MNL---FGKVVSFSRGKLNNDTQR-VTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDL 76 (378) Q Consensus 1 M~~---f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l 76 (378) ... +.++..+-.|.- ..... ..... ....+..++...+|+..++-+-.-|+.+-.. ++ . .....+ T Consensus 39 ~~~~~~~~~l~~Yy~g~~-~i~~~~~~~~~-~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~--~d----~---~~~~~l 107 (470) T protein:vir:99 39 TVLKPRYRENMKLYLGKH-KILTAPEKETG-ADNRIVVNSAKYVVDVYNGYFCGIEPKLALL--ND----S---SKIDEI 107 (470) T ss_pred HhhHHHHHHHHHHhcccc-ccccCcccccC-CcceeecchHHHHHHHHhhhhccCCeeEeeC--Cc----h---hHHHHH Confidence 000 011111101100 00000 00000 0011123345666777777776667664211 10 0 011235 Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE--eec-------------------------CC- Q lcl|Aclame:pro 77 DEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL--LFA-------------------------DD- 128 (378) Q Consensus 77 ~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~--~~~-------------------------~~- 128 (378) .+++.. | ........+....+.+|.+|+++ +.+..|++.-. -|. +. T Consensus 108 ~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v-~~d~dg~~~i~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~ 181 (470) T protein:vir:99 108 ARWNRQ--E---NFFDTINEISKQCDIFGRSIASI-YQGEDARPHLMYSSPNHAFIIYDDTVQRQPLAFVHYQIDNSNNW 181 (470) T ss_pred HHHHHh--c---CHhHHHHHHHHHHHhcCeeEEEE-EeCCCCeEEEEEEccceeEEEEcCCCCcceEEEEEEEEEecCCe Confidence 555432 2 44556678888999999999876 34555554211 110 00 Q ss_pred e----EEEeeeEEEEEcc---------------ccC---------CccccchH---HHHHHHHHHH----Hh----cCCc Q lcl|Aclame:pro 129 K----KEYKPEELVRLTS---------------PFY---------INEDTSIL---DNALASIQTK----LE----QGKL 169 (378) Q Consensus 129 ~----~~~~~~dvih~r~---------------~~~---------~~~~~~~~---~~~~~~i~~~----~~----~~~~ 169 (378) . ..|..+.+++++. +++ ...|.|.+ ..+.++++.. .+ .+.+ T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~ 261 (470) T protein:vir:99 182 TDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFENEERQGIFDSIKTLINALDKVISQKANQVEYFDNA 261 (470) T ss_pred eEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecCCCCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 0 0122333333321 000 01123322 2333333321 11 2223 Q ss_pred ceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEe-----cCCceeeecccchhhhhH-HHHHHHHHHHHHHhC Q lcl|Aclame:pro 170 RGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPV-----DNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYF 243 (378) Q Consensus 170 ~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fg 243 (378) --++.- ..+.++...+....+.. .+++.+ +.+.+++.++........ ..++.+++.|+..-+ T Consensus 262 ~~~i~g-~~~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~ 329 (470) T protein:vir:99 262 YMYMIG-FKLPEDDEGNPKFDFKN-----------NRVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAM 329 (470) T ss_pred eeeeec-CCcccccccchhhhhhh-----------cceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhC Confidence 222221 11222111111111111 123322 234455555433322222 345778889999999 Q ss_pred CCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecchhh Q lcl|Aclame:pro 244 MNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLF 306 (378) Q Consensus 244 VPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l 306 (378) +|+... +|+.+... ....+..+|.-.++.+...+..+--. ......+++.| ... T Consensus 330 ~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~-------~~~~~~i~v~f--~~~ 400 (470) T protein:vir:99 330 VPNIQDKNFAGNSSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQD-------QELWSELDFKF--TRN 400 (470) T ss_pred CccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-------ccccccceEEe--CCC Confidence 997533 23222211 12345556666666555554432211 11122345555 455 Q ss_pred hhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCC-CCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 307 KFATLKELIDLYHENINGPIFTQNQLLVKMGEQP-IEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 307 ~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p-~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) ...|..+.++++.++. |+++...+++.++.-. -..-+.+.--. .-..+...+.-+.....+.+.++.+| T Consensus 401 ~p~~~~e~a~~~~kl~--giis~et~l~~l~~vd~~~E~eri~~E~-~~~~~~~~~~~~~~d~~~~d~~~ee~ 470 (470) T protein:vir:99 401 LPEDMASAIDNAKNAE--GIVSKKTQLGMIPDIEPDAEMKQIAKEK-ADAIKQTQQLSMPIDILKRDNNAEEE 470 (470) T ss_pred CCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCCHHHHHHHHHHHH-HHHHHHHHhhcCCCCcCCCCCCccCC Confidence 6678899999999885 7899988888775421 00011100000 00000000000000111111111111 No 202 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=74.20 E-value=0.16 Score=24.93 Aligned_cols=337 Identities=12% Similarity=0.099 Sum_probs=118.4 Q ss_pred CCcccccccccccc----ccCCc------cceeecccc--h-----hhh----------------------hhHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK----LNNDT------QRVTAWQNE--A-----VEY----------------------TSAFVTNIH 41 (378) Q Consensus 1 M~~f~~~~~~~~~~----~~~~~------~~~~~~~~~--~-----~~~----------------------~~~~v~~~i 41 (378) ||||.+++.+.+.. ++.+- ..+...... . ..| +...-..++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 99999887754320 00000 001000000 0 000 001122333 Q ss_pred HHHHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE Q lcl|Aclame:pro 42 NKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL 121 (378) Q Consensus 42 ~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~ 121 (378) +.+|+-+..-|..+ ..+ + +.....|.++|. -| .........+.+.+..|.+++.+.+++..-++. T Consensus 81 ~~~A~lv~~e~~~i-~~~--d-------~~~~~~l~~il~--~n---~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~ 145 (500) T protein:vir:98 81 KKIASLVFNEQAEI-KVD--D-------DAANEFISETLK--ND---RFNKNFERYLESCLALGGLAMRPYVDGDKVRVA 145 (500) T ss_pred HHHhhhhcCCcceE-ecC--C-------hHHHHHHHHHHh--hc---cHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEE Confidence 44444443323221 000 0 011223444442 12 223334455666677787776665543222221 Q ss_pred EE-----ee---cCCe------------------EEEe--------eeEEEEEccccC----Ccc-ccc-hHHHHHHHHH Q lcl|Aclame:pro 122 DL-----LF---ADDK------------------KEYK--------PEELVRLTSPFY----INE-DTS-ILDNALASIQ 161 (378) Q Consensus 122 ~~-----~~---~~~~------------------~~~~--------~~dvih~r~~~~----~~~-~~~-~~~~~~~~i~ 161 (378) .. +| +.+. ..|. ..+-.+|++..+ ... |.. ++......+. T Consensus 146 ~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~ 225 (500) T protein:vir:98 146 FVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLK 225 (500) T ss_pred EEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcC Confidence 11 11 1110 0000 000111211100 000 000 0000000010 Q ss_pred H---HHhcCCcce-eeeeCCc----------CCH-----H---HHHHHHHHHHHHHHHhhccccccceeE---------- Q lcl|Aclame:pro 162 T---KLEQGKLRG-LLKINAF----------LDI-----D---NTQEYREKALTTIKNMQEGSSYNGLTP---------- 209 (378) Q Consensus 162 ~---~~~~~~~~g-il~~~~~----------l~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 209 (378) . ..+-.+|-+ ++..+.. .|. + +.++.-.+|...++. +.. .+.+ T Consensus 226 ~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~---g~~--~i~v~~~~l~~~~~ 300 (500) T protein:vir:98 226 DEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKM---GQR--RVAVPESLTALTVR 300 (500) T ss_pred cceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHh---Ccc--eeeechHHhcccCC Confidence 0 001112221 1111100 010 0 111111222222211 000 0111 Q ss_pred ---------------------e----cCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCHHHhcc------cchHHH Q lcl|Aclame:pro 210 ---------------------V----DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG------TASQEQ 257 (378) Q Consensus 210 ---------------------l----~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~~------~~~e~~ 257 (378) + +++..++.++..-.+-+ .+.++...++|+...|++|..++. |++|.. T Consensus 301 ~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~ 380 (500) T protein:vir:98 301 TTDGDVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIV 380 (500) T ss_pred CCCccccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHH Confidence 0 11112333332222222 234556677899999999988752 222321 Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHh-hcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhC Q lcl|Aclame:pro 258 ------------QIYFYNSTIIPLLIQLEKELTY-KLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENING 324 (378) Q Consensus 258 ------------~~~f~~~~l~P~~~~ie~~l~~-~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~ 324 (378) ....++.+|..+++.|-+-.+. .++. ......+.+.+.|+ .-...|..+.++...+++.+ T Consensus 381 s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~-----~~~~~~~~v~v~f~--d~i~~d~~~~~~~~~~~v~a 453 (500) T protein:vir:98 381 SENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQ-----SEVPSMDNISISLD--DGVFTDRDAELDYWIKVVNA 453 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCCcceEEEeC--CCCCCCHHHHHHHHHHHHHc Confidence 1124445555555544432211 1111 01112334445554 44667888999999999999 Q ss_pred CCCCHHHHHHHh-CCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 325 PIFTQNQLLVKM-GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 325 G~~t~NE~R~~~-gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) |+|+.-+++.+. |++.- .-++.+ ...+ .+.....++.+++ T Consensus 454 Gi~s~~~~i~~~~g~~ee-ea~~~l-----------~~i~--~E~~~~~~~~~~~ 494 (500) T protein:vir:98 454 GFGTREMAIQKVLNVTEE-KAQEIA-----------AEIN--TGIVDEINQQRTD 494 (500) T ss_pred CCCCHHHHHHhcCCCCHH-HHHHHH-----------HHHH--HhccccCCCCCcc Confidence 999999988543 54321 011100 0000 0111111111112 No 203 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=74.20 E-value=0.16 Score=24.93 Aligned_cols=337 Identities=12% Similarity=0.099 Sum_probs=118.4 Q ss_pred CCcccccccccccc----ccCCc------cceeecccc--h-----hhh----------------------hhHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGK----LNNDT------QRVTAWQNE--A-----VEY----------------------TSAFVTNIH 41 (378) Q Consensus 1 M~~f~~~~~~~~~~----~~~~~------~~~~~~~~~--~-----~~~----------------------~~~~v~~~i 41 (378) ||||.+++.+.+.. ++.+- ..+...... . ..| +...-..++ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIARTAA 80 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHHHHH Confidence 99999887754320 00000 001000000 0 000 001122333 Q ss_pred HHHHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE Q lcl|Aclame:pro 42 NKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL 121 (378) Q Consensus 42 ~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~ 121 (378) +.+|+-+..-|..+ ..+ + +.....|.++|. -| .........+.+.+..|.+++.+.+++..-++. T Consensus 81 ~~~A~lv~~e~~~i-~~~--d-------~~~~~~l~~il~--~n---~f~~~~~~~~e~a~a~G~~~~k~~~d~~~~~I~ 145 (500) T protein:vir:30 81 KKIASLVFNEQAEI-KVD--D-------DAANEFISETLK--ND---RFNKNFERYLESCLALGGLAMRPYVDGDKVRVA 145 (500) T ss_pred HHHhhhhcCCcceE-ecC--C-------hHHHHHHHHHHh--hc---cHHHHHHHHHHHHhhcCCEEEEEEEeCCceEEE Confidence 44444443323221 000 0 011223444442 12 223334455666677787776665543222221 Q ss_pred EE-----ee---cCCe------------------EEEe--------eeEEEEEccccC----Ccc-ccc-hHHHHHHHHH Q lcl|Aclame:pro 122 DL-----LF---ADDK------------------KEYK--------PEELVRLTSPFY----INE-DTS-ILDNALASIQ 161 (378) Q Consensus 122 ~~-----~~---~~~~------------------~~~~--------~~dvih~r~~~~----~~~-~~~-~~~~~~~~i~ 161 (378) .. +| +.+. ..|. ..+-.+|++..+ ... |.. ++......+. T Consensus 146 ~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~ 225 (500) T protein:vir:30 146 FVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLK 225 (500) T ss_pred EEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcC Confidence 11 11 1110 0000 000111211100 000 000 0000000010 Q ss_pred H---HHhcCCcce-eeeeCCc----------CCH-----H---HHHHHHHHHHHHHHHhhccccccceeE---------- Q lcl|Aclame:pro 162 T---KLEQGKLRG-LLKINAF----------LDI-----D---NTQEYREKALTTIKNMQEGSSYNGLTP---------- 209 (378) Q Consensus 162 ~---~~~~~~~~g-il~~~~~----------l~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 209 (378) . ..+-.+|-+ ++..+.. .|. + +.++.-.+|...++. +.. .+.+ T Consensus 226 ~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~---g~~--~i~v~~~~l~~~~~ 300 (500) T protein:vir:30 226 DEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKM---GQR--RVAVPESLTALTVR 300 (500) T ss_pred cceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHh---Ccc--eeeechHHhcccCC Confidence 0 001112221 1111100 010 0 111111222222211 000 0111 Q ss_pred ---------------------e----cCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCHHHhcc------cchHHH Q lcl|Aclame:pro 210 ---------------------V----DNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG------TASQEQ 257 (378) Q Consensus 210 ---------------------l----~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~~------~~~e~~ 257 (378) + +++..++.++..-.+-+ .+.++...++|+...|++|..++. |++|.. T Consensus 301 ~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~ 380 (500) T protein:vir:30 301 TTDGDVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIV 380 (500) T ss_pred CCCccccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHH Confidence 0 11112333332222222 234556677899999999988752 222321 Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHh-hcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhC Q lcl|Aclame:pro 258 ------------QIYFYNSTIIPLLIQLEKELTY-KLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENING 324 (378) Q Consensus 258 ------------~~~f~~~~l~P~~~~ie~~l~~-~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~ 324 (378) ....++.+|..+++.|-+-.+. .++. ......+.+.+.|+ .-...|..+.++...+++.+ T Consensus 381 s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~-----~~~~~~~~v~v~f~--d~i~~d~~~~~~~~~~~v~a 453 (500) T protein:vir:30 381 SENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQ-----SEVPSMDNISISLD--DGVFTDRDAELDYWIKVVNA 453 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCCCcceEEEeC--CCCCCCHHHHHHHHHHHHHc Confidence 1124445555555544432211 1111 01112334445554 44667888999999999999 Q ss_pred CCCCHHHHHHHh-CCCCCCCCCeeeecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 325 PIFTQNQLLVKM-GEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 325 G~~t~NE~R~~~-gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) |+|+.-+++.+. |++.- .-++.+ ...+ .+.....++.+++ T Consensus 454 Gi~s~~~~i~~~~g~~ee-ea~~~l-----------~~i~--~E~~~~~~~~~~~ 494 (500) T protein:vir:30 454 GFGTREMAIQKVLNVTEE-KAQEIA-----------AEIN--TGIVDEINQQRTD 494 (500) T ss_pred CCCCHHHHHHhcCCCCHH-HHHHHH-----------HHHH--HhccccCCCCCcc Confidence 999999988543 54321 011100 0000 0111111111112 No 204 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=69.63 E-value=0.22 Score=24.19 Aligned_cols=347 Identities=10% Similarity=-0.012 Sum_probs=127.5 Q ss_pred CCcccc--------ccccccccccCCccce----eeccc--chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGK--------VVSFSRGKLNNDTQRV----TAWQN--EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~--------~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) ..|..+ +.... -++.+.-.-. ..... ........+..-.|+..++-+-+-|+.+ ... + T Consensus 46 ~~~i~~~~~~~~~r~~~l~-~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~-~~~-d----- 117 (511) T protein:vir:78 46 SKYIEHHMDYQRPRLKVLS-DYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQY-QDD-D----- 117 (511) T ss_pred HHHHHHHHHhhhHHHHHHH-HHhhccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCcee-ecC-c----- Confidence 011110 00000 0111000000 00000 0001122344556777777776777654 111 1 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE----------eecCC-------- Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL----------LFADD-------- 128 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~----------~~~~~-------- 128 (378) ......|.+++.. | ....+...+...++.+|.||.++ +.+..|++.-. |-+.. T Consensus 118 ---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v-y~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~v 188 (511) T protein:vir:78 118 ---KDVLEAIEAFNDL--N---DVESHNRSLGLDLSIYGKAYELM-IRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGV 188 (511) T ss_pred ---hHHHHHHHHHHhh--c---ChhHHHHHHHHHHHhcCeeEEEE-EeCCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 0122445555542 3 23345566788899999999875 34555543211 11000 Q ss_pred --------------e----EEEeeeEEEEEccccC---------------------------CccccchHH---HHHHHH Q lcl|Aclame:pro 129 --------------K----KEYKPEELVRLTSPFY---------------------------INEDTSILD---NALASI 160 (378) Q Consensus 129 --------------~----~~~~~~dvih~r~~~~---------------------------~~~~~~~~~---~~~~~i 160 (378) . ..|.++.+.+++.... ...+.|.++ .+.+++ T Consensus 189 r~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:78 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHH Confidence 0 0123333444321000 011222222 222222 Q ss_pred HHH----Hh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHH Q lcl|Aclame:pro 161 QTK----LE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEI 231 (378) Q Consensus 161 ~~~----~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~ 231 (378) +.. .+ .+.+--++.-....+++......+...-......- ... .-...+.+.+++-|+....... ...+ T Consensus 269 ~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~~~~e~~~ 346 (511) T protein:vir:78 269 DNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVY-VDA-EGRETEGSVDGGYIYKQYDVQGTEAYK 346 (511) T ss_pred HHHHHHHHHHHHHhhcchhheecCccCCchhhcccccccceeccccce-ecc-ccccCCCCcceeEEeecCCHHHHHHHH Confidence 221 11 12222222221222222211111000000000000 000 0001122334444433222222 2345 Q ss_pred HHHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcccc Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~ 294 (378) +.+.+.|+..-++|.... +|+.+... ....+...|.-.++.|...+...--.. ..... T Consensus 347 ~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~-----~~~~~ 421 (511) T protein:vir:78 347 DRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID-----ANKDF 421 (511) T ss_pred HHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----ccccc Confidence 677889999988886433 23323211 123455556666666655554321000 00111 Q ss_pred ceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee------ecccceecccchhccCcc Q lcl|Aclame:pro 295 YYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI------ANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 295 ~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~------~~~n~~~~~~~~~~~~~~ 366 (378) ..+++.|. .-...|.++.++.+.++. |+++..-+.+++++-+-+. -+.+- ........ .....+. T Consensus 422 ~~i~~~f~--~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~---~~~~~~~ 494 (511) T protein:vir:78 422 NTVRYVYN--RNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGI---YKDPRDI 494 (511) T ss_pred ccceEEeC--CCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcc---ccCCCCC Confidence 23455553 456678899999999885 8899888888775432110 00000 00000000 0000111 Q ss_pred CCCCCCCC-----CCCC Q lcl|Aclame:pro 367 KDVTSTDE-----TNNQ 378 (378) Q Consensus 367 ~~~~~~~e-----~~~e 378 (378) .+.++.++ +.+| T Consensus 495 ~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:78 495 NDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCCccCcccccC Confidence 11111111 1111 No 205 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=69.63 E-value=0.22 Score=24.19 Aligned_cols=347 Identities=10% Similarity=-0.012 Sum_probs=127.5 Q ss_pred CCcccc--------ccccccccccCCccce----eeccc--chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGK--------VVSFSRGKLNNDTQRV----TAWQN--EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~--------~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) ..|..+ +.... -++.+.-.-. ..... ........+..-.|+..++-+-+-|+.+ ... + T Consensus 46 ~~~i~~~~~~~~~r~~~l~-~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~-~~~-d----- 117 (511) T protein:vir:96 46 SKYIEHHMDYQRPRLKVLS-DYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQY-QDD-D----- 117 (511) T ss_pred HHHHHHHHHhhhHHHHHHH-HHhhccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCcee-ecC-c----- Confidence 011110 00000 0111000000 00000 0001122344556777777776777654 111 1 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE----------eecCC-------- Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL----------LFADD-------- 128 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~----------~~~~~-------- 128 (378) ......|.+++.. | ....+...+...++.+|.||.++ +.+..|++.-. |-+.. T Consensus 118 ---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v-y~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~v 188 (511) T protein:vir:96 118 ---KDVLEAIEAFNDL--N---DVESHNRSLGLDLSIYGKAYELM-IRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGV 188 (511) T ss_pred ---hHHHHHHHHHHhh--c---ChhHHHHHHHHHHHhcCeeEEEE-EeCCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 0122445555542 3 23345566788899999999875 34555543211 11000 Q ss_pred --------------e----EEEeeeEEEEEccccC---------------------------CccccchHH---HHHHHH Q lcl|Aclame:pro 129 --------------K----KEYKPEELVRLTSPFY---------------------------INEDTSILD---NALASI 160 (378) Q Consensus 129 --------------~----~~~~~~dvih~r~~~~---------------------------~~~~~~~~~---~~~~~i 160 (378) . ..|.++.+.+++.... ...+.|.++ .+.+++ T Consensus 189 r~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:96 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHH Confidence 0 0123333444321000 011222222 222222 Q ss_pred HHH----Hh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhhh-HHHH Q lcl|Aclame:pro 161 QTK----LE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLN-KDEI 231 (378) Q Consensus 161 ~~~----~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~-~~~~ 231 (378) +.. .+ .+.+--++.-....+++......+...-......- ... .-...+.+.+++-|+....... ...+ T Consensus 269 ~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~~~~~~e~~~ 346 (511) T protein:vir:96 269 DNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVY-VDA-EGRETEGSVDGGYIYKQYDVQGTEAYK 346 (511) T ss_pred HHHHHHHHHHHHHhhcchhheecCccCCchhhcccccccceeccccce-ecc-ccccCCCCcceeEEeecCCHHHHHHHH Confidence 221 11 12222222221222222211111000000000000 000 0001122334444433222222 2345 Q ss_pred HHHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhcccc Q lcl|Aclame:pro 232 DLIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNL 294 (378) Q Consensus 232 ~~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~ 294 (378) +.+.+.|+..-++|.... +|+.+... ....+...|.-.++.|...+...--.. ..... T Consensus 347 ~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~-----~~~~~ 421 (511) T protein:vir:96 347 DRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID-----ANKDF 421 (511) T ss_pred HHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----ccccc Confidence 677889999988886433 23323211 123455556666666655554321000 00111 Q ss_pred ceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeee------ecccceecccchhccCcc Q lcl|Aclame:pro 295 YYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYI------ANLNAVAVKNLSDLQGSR 366 (378) Q Consensus 295 ~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~------~~~n~~~~~~~~~~~~~~ 366 (378) ..+++.|. .-...|.++.++.+.++. |+++..-+.+++++-+-+. -+.+- ........ .....+. T Consensus 422 ~~i~~~f~--~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~---~~~~~~~ 494 (511) T protein:vir:96 422 NTVRYVYN--RNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGI---YKDPRDI 494 (511) T ss_pred ccceEEeC--CCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcc---ccCCCCC Confidence 23455553 456678899999999885 8899888888775432110 00000 00000000 0000111 Q ss_pred CCCCCCCC-----CCCC Q lcl|Aclame:pro 367 KDVTSTDE-----TNNQ 378 (378) Q Consensus 367 ~~~~~~~e-----~~~e 378 (378) .+.++.++ +.+| T Consensus 495 ~~~~~~~~~~~~~~e~~ 511 (511) T protein:vir:96 495 NDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCCccCcccccC Confidence 11111111 1111 No 206 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=68.98 E-value=0.23 Score=24.09 Aligned_cols=339 Identities=8% Similarity=-0.050 Sum_probs=121.6 Q ss_pred CCccccc-------cccccccccCCc----cceeeccc-chhhh--hhHHHHHHHHHHHhhhccCceEEEEecccccccc Q lcl|Aclame:pro 1 MNLFGKV-------VSFSRGKLNNDT----QRVTAWQN-EAVEY--TSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) Q Consensus 1 M~~f~~~-------~~~~~~~~~~~~----~~~~~~~~-~~~~~--~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~ 66 (378) =.|+... .... .++.+.- .....-.. ..... ...+..-+|+..++.+--.. |+.. ++ T Consensus 33 ~~l~~~~~~~~~rl~~l~-~YY~G~~~~~~~~~~~~~~~~~~~~~~v~n~~~~ivd~~a~~l~~~g---f~~~-d~---- 103 (501) T protein:vir:25 33 ADMWRLHISERQWLDRIY-EYTKGLRGRPEVPEGASDEVKELAKLSVKNVLSLVRDSFAQNLSVVG---YRNA-LA---- 103 (501) T ss_pred HHHHHHHHHHHHHHHHHH-HHHhcCCCchhccccCChhhhhhHhhhhcChHHHHHHHHHhhhcccc---eecC-Cc---- Confidence 0111110 0000 1111110 00000000 00000 11234455665555442112 2221 11 Q ss_pred cceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe-e--------cC--C------- Q lcl|Aclame:pro 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL-F--------AD--D------- 128 (378) Q Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~-~--------~~--~------- 128 (378) ..+..+.+++. =|.. ...-..+..+++++|.||+++. .+..|..+..+ | +. . T Consensus 104 ----~~~~~l~~i~~--~N~~---d~~~~~~~~~a~i~G~ay~~v~-~de~~~~i~~~sp~~~~~iy~D~~~~~~~~~ai 173 (501) T protein:vir:25 104 ----KENDPAWEMWQ--RNRM---DARQAEVHRPALTYGASYVTVT-PTDEGPVFRTRSPRQILAVYADPSVDAWPQYAL 173 (501) T ss_pred ----cchHHHHHHHH--hcCh---hHHHHHHHHHHhhcCceEEEEe-cCCCCCeEEEeccccEEEEEecCCCCcceeEEE Confidence 12345666553 2432 2344567888899999998753 44444322111 1 00 0 Q ss_pred ------------e--EEEeeeE----------------------------------------------EEEEccccC-Cc Q lcl|Aclame:pro 129 ------------K--KEYKPEE----------------------------------------------LVRLTSPFY-IN 147 (378) Q Consensus 129 ------------~--~~~~~~d----------------------------------------------vih~r~~~~-~~ 147 (378) + ..|.+.. |+||.|... .. T Consensus 174 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~~~~~~ 253 (501) T protein:vir:25 174 ETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNGRDADD 253 (501) T ss_pred EEEeeccccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCccccCc Confidence 0 0011111 233332100 01 Q ss_pred cccchH-------HHHHHHHHHHHhc----CCc-ceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEec-CCc Q lcl|Aclame:pro 148 EDTSIL-------DNALASIQTKLEQ----GKL-RGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVD-NKT 214 (378) Q Consensus 148 ~~~~~~-------~~~~~~i~~~~~~----~~~-~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~ 214 (378) .+.|-+ +.+...+....+. +.| +.++-. +.+.. +.|+. ..++++.++ ++. T Consensus 254 ~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G~----~~~~~----~~~~~---------~~~~i~~~~~~~~ 316 (501) T protein:vir:25 254 MIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISGW----TGSKA----EVLKA---------SALRVWTFEDPEV 316 (501) T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhCC----CCCcc----chhhh---------cccceeccCCCCc Confidence 123322 2222222221111 111 122111 11111 11211 123466665 466 Q ss_pred eeeecccchhhhh--HHHHHHHHHHHHHHhCCCHHHhcccchH--HHHHHHHHHHHHHHHHHHHHHHHhhcC----ChhH Q lcl|Aclame:pro 215 EIVELKKDYSVLN--KDEIDLIKSELLTGYFMNENILLGTASQ--EQQIYFYNSTIIPLLIQLEKELTYKLI----STNR 286 (378) Q Consensus 215 ~~~~l~~~~~~~~--~~~~~~~~~~Ia~~fgVPp~~l~~~~~e--~~~~~f~~~~l~P~~~~ie~~l~~~Ll----~~~~ 286 (378) ++.++... +++ .+.++.+..+|+..-++|++.+++..++ .....+....|.-.+...+..|...|- .--. T Consensus 317 ~~~q~~~~--~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~ 394 (501) T protein:vir:25 317 KAQAFPPA--SVEPYNLILEEMLQHVAMVAQISPAQVTGKMINVSAEALAAAEANQQRKLAAKRESFGESWEQLLRLAAE 394 (501) T ss_pred eEEEeccc--ChHHHHHHHHHHHHHHHhhcCCChhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 77666532 233 2446777788999999999988754221 111112222222222222222211110 0000 Q ss_pred HhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHH-HhCCCCCC--CCCeeeeccccee-cccc--- Q lcl|Aclame:pro 287 RRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLV-KMGEQPIE--GGDVYIANLNAVA-VKNL--- 359 (378) Q Consensus 287 ~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~-~~gl~p~~--gGD~~~~~~n~~~-~~~~--- 359 (378) ...+.......++.+.+......+..+.++++.++++.|+ +.-.+.. +.|+.+-+ .-..........+ ++.+ T Consensus 395 ~~~~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et~~~~~~g~~~~~ie~~~~~~~e~~~~~~~~~~~~~ 473 (501) T protein:vir:25 395 MDDDPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI-PIEHLLSMVPGMTQQTIQAIKDSLRGGEVKSLVDKLLSN 473 (501) T ss_pred HhCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHhhcc Confidence 0000011111234444455677899999999999999886 4444433 35776521 0000000000000 0000 Q ss_pred hhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 360 SDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 360 ~~~~~~~~~~~~~~e~~~e 378 (378) ...+....+.+...+++++ T Consensus 474 ~~~~~~~~~~~~~~~~~~~ 492 (501) T protein:vir:25 474 EPAPVPPPPPQAAAQALNE 492 (501) T ss_pred CcCCCCCCCCCCCcccccc Confidence 0000111111111112222 No 207 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=67.38 E-value=0.25 Score=23.86 Aligned_cols=338 Identities=7% Similarity=-0.045 Sum_probs=133.6 Q ss_pred ccccccccc-------cccccCCcccee------ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccce Q lcl|Aclame:pro 3 LFGKVVSFS-------RGKLNNDTQRVT------AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) Q Consensus 3 ~f~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~ 69 (378) |........ .-++.+.-..+. ...............-.|+..++-+-+-|+.+- ....+ . T Consensus 1 ~~~~~~~~~~~r~~~l~~yy~g~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~-~~~~~--~---- 73 (440) T protein:vir:95 1 MLAAFLGSQKQRLAILASYAQGDNFSILSGHRRLDDEKADYRVRHKWGGYISSFATGYVIGNPVSIG-VMEGG--S---- 73 (440) T ss_pred ChhhHHHHHHHHHHHHHHHhccCCcccccccccccccCCcceeecchHHHHHHhhhhheeccCceEe-eCCCc--c---- Confidence 111111000 000111000000 000000111234455667777777666676542 11110 0 Q ss_pred eccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--EeecC-------------------- Q lcl|Aclame:pro 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLFAD-------------------- 127 (378) Q Consensus 70 ~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~~~-------------------- 127 (378) ......+.+++.. | ........+..+.+.+|.||+++. .+..|++.- +-|.. T Consensus 74 ~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~~~-~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~ 147 (440) T protein:vir:95 74 ADQLSTIKDIEWQ--N---DINALNSDLAFDASVYGRAYEYHF-RDKDKVDRVVLISPLEMFVIRDLTVEQNIIAAVHLP 147 (440) T ss_pred HHHHHHHHHHHHh--c---CHhHHHHHHHHHHhhcCeEEEEEE-ecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEE Confidence 0111234444432 2 233345567788999999998763 455555421 11100 Q ss_pred ----C-eE-EEeeeEEE----------------------------EEccccCCccccchHHHHHHHHHHHH----h---- Q lcl|Aclame:pro 128 ----D-KK-EYKPEELV----------------------------RLTSPFYINEDTSILDNALASIQTKL----E---- 165 (378) Q Consensus 128 ----~-~~-~~~~~dvi----------------------------h~r~~~~~~~~~~~~~~~~~~i~~~~----~---- 165 (378) . .. .|..+.++ |+++...+...+..+..+.++++..+ + T Consensus 148 ~~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~lida~~~~~s~~~~~~~~ 227 (440) T protein:vir:95 148 IYADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWNNRFRMGDYESEISLIDAYDAGQSDTANYMSD 227 (440) T ss_pred EecCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH Confidence 0 00 12233333 33322111111222333333333221 1 Q ss_pred cCCcceeeeeC---CcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhhh-hHHHHHHHHHHHHHH Q lcl|Aclame:pro 166 QGKLRGLLKIN---AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVL-NKDEIDLIKSELLTG 241 (378) Q Consensus 166 ~~~~~gil~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~-~~~~~~~~~~~Ia~~ 241 (378) .+.|.-+++-. ...+++....+++.-.-.. .........+.+.+.+.+..+...- ....++.+.+.|+.. T Consensus 228 ~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~ 301 (440) T protein:vir:95 228 LNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFL------KTGISTTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHRF 301 (440) T ss_pred hhcceeeeecccccCCCCccchhhhhhccceec------ccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 22333333221 2223333222211110000 0000111123333344343222111 134567788899999 Q ss_pred hCCCHHHh---cccchHH--------------HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhhccccceeeEEecch Q lcl|Aclame:pro 242 YFMNENIL---LGTASQE--------------QQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQ 304 (378) Q Consensus 242 fgVPp~~l---~~~~~e~--------------~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~ 304 (378) -++|..-. +|+.+.. .....+...|..+++.|...++..-- .......+++.| . T Consensus 302 s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~-------~~~~~~~v~i~f--~ 372 (440) T protein:vir:95 302 SRIPNLDDDRFNSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAING-------PVIEANKLTFTF--H 372 (440) T ss_pred hCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------cccccccceEEe--C Confidence 99986432 2222211 11235556666666666655543211 011122344444 4 Q ss_pred hhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccc--h--hccCccCCCCCCCCCCCC Q lcl|Aclame:pro 305 LFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNL--S--DLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 305 ~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~--~--~~~~~~~~~~~~~e~~~e 378 (378) .-...|.++.++.+.++ .|+++.--+.++++.-..+ ++ ...+..- . ...........+.++|.| T Consensus 373 ~~~p~~~~~~ad~~~kl--~g~iS~et~~~~l~~~d~~--~E------~~ri~~E~~~~~~~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 373 PNIPQDVWTEIKAYIEA--GGEISQETLMENASFTDYK--TE------HSRILKQGGSSDLEIGQIVGDADVGQADTE 440 (440) T ss_pred CCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCCCCcH--HH------HHHHHHHHHHhhhhHHhhccCCCCCCcCCC Confidence 45667899999999987 5789987777776542111 11 1111100 0 000111122334444444 No 208 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=64.91 E-value=0.29 Score=23.51 Aligned_cols=327 Identities=10% Similarity=0.053 Sum_probs=126.4 Q ss_pred CCcc-------cccccccccc---------ccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccc Q lcl|Aclame:pro 1 MNLF-------GKVVSFSRGK---------LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVG 64 (378) Q Consensus 1 M~~f-------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~ 64 (378) +.-+ .+...+-.+. ......... .. .......+....+|+..++-+-.-|+.+ ..+ + T Consensus 35 i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~-~~-~~~ki~~n~~~~Ivd~~~~~l~g~p~~~-~~~-d--- 107 (474) T protein:vir:96 35 INDHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGEIDP-LK-PDWRMFTNYHQNLVDQKVAYAVANPVTF-SSD-D--- 107 (474) T ss_pred HHHHHHHHHHHHHHHHHhccCCcchhccchhcccccccc-cc-cchhcccchHHHHHHhhhhhhcccCcee-ecC-c--- Confidence 0000 0000000000 000000000 00 0011233455667787777777777664 111 1 Q ss_pred cccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEE--Eeec-------C-------- Q lcl|Aclame:pro 65 SDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLFA-------D-------- 127 (378) Q Consensus 65 ~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~--~~~~-------~-------- 127 (378) ......|.++++ | ........+...+..+|.||+++ +.+..|++.- +-|. + T Consensus 108 -----~~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~~-y~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~ 175 (474) T protein:vir:96 108 -----DKSLKTIQEVLN---H---KWDDKLVDILTAASNKGIEWLQP-YIDENGEFKTFRVPAEQAIPIWTNKERDTLKA 175 (474) T ss_pred -----hHHHHHHHHHHh---c---CHHHHHHHHHHHHHhcCeeEEEE-EecCCCceEEEEEcccceEEEEcCCCCCceEE Confidence 112344555553 2 22344455678888999999765 3455555421 1110 0 Q ss_pred --------C-e--EEEeeeEEEEE---------------------------------------ccccCCccccchHHHHH Q lcl|Aclame:pro 128 --------D-K--KEYKPEELVRL---------------------------------------TSPFYINEDTSILDNAL 157 (378) Q Consensus 128 --------~-~--~~~~~~dvih~---------------------------------------r~~~~~~~~~~~~~~~~ 157 (378) + . ..|..+.|.|+ ++...+...+..+..+. T Consensus 176 ~vr~~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~li 255 (474) T protein:vir:96 176 FIRYYRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKNNPQEMSDLFMYKTII 255 (474) T ss_pred EEEEEeecCceEEEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEeccCCCCCCcHHHHHHHH Confidence 0 0 01122233332 22111111122223333 Q ss_pred HHHHHHH----h----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEec-CCceeeecccchhhhh- Q lcl|Aclame:pro 158 ASIQTKL----E----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVD-NKTEIVELKKDYSVLN- 227 (378) Q Consensus 158 ~~i~~~~----~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~l~~~~~~~~- 227 (378) ++++..+ + .+.|--++. .....+ . +.+...+ ...+++.++ .|.+++.+......-. T Consensus 256 Da~d~~~S~~~~~~~~~~~~~lv~~-g~~~~~--~----~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~~~ 321 (474) T protein:vir:96 256 DAMDKRLSDTQNTFDESTELIYILK-GYEGQD--L----DEFMRNL-------KYYKAINVDGDGSGVDTIQIEVPVQSS 321 (474) T ss_pred HHHHHHHHHHHHHHHHhccceeeee-cCCccc--c----cchhhhh-------hcCceEEecCCCCceeEEeecCChHHH Confidence 3333221 1 122222221 111111 1 1121111 123456554 4555555553322212 Q ss_pred HHHHHHHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHhhh Q lcl|Aclame:pro 228 KDEIDLIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVV 290 (378) Q Consensus 228 ~~~~~~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g 290 (378) ...++.+.+.|+..-++|..-. +++.+... ...++...|..+++.|..-+... T Consensus 322 ~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~~~---------- 391 (474) T protein:vir:96 322 KEYLDMLRDYVIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLN---------- 391 (474) T ss_pred HHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------- Confidence 3446778889999999986433 22222211 12355555666665554443221 Q ss_pred ccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCCCC Q lcl|Aclame:pro 291 KGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVT 370 (378) Q Consensus 291 ~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~ 370 (378) .....+++.|. .-+-.|..+.++ .+..+|+++...+++++++- ++-+.-+....--..+..........+.. T Consensus 392 -~~~~~i~i~f~--~~~p~~~~e~~~---~~~~ag~iS~et~~~~~~~v--~d~~~E~~ri~~E~~e~~~~~~~~~~~~~ 463 (474) T protein:vir:96 392 -IKVQDVEITFN--FNVMVNELEQSQ---IGVQSQYLSKETVVTNHPWV--DDPVAELERIEQDNIDFNKQLPPLEGDAN 463 (474) T ss_pred -cccceeeEEec--cCCCcCHHHHHH---HHHhcCCCchHHHHHhCCCC--CCHHHHHHHHHHHHHHHHhcccccccccc Confidence 11223445553 334445555555 45678999999999887542 22111000000000000000000011111 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 371 STDETNNQ 378 (378) Q Consensus 371 ~~~e~~~e 378 (378) .+.++++| T Consensus 464 ~~~~d~~~ 471 (474) T protein:vir:96 464 GRAQDNES 471 (474) T ss_pred cccCCCcc Confidence 11112222 No 209 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=64.43 E-value=0.3 Score=23.45 Aligned_cols=330 Identities=9% Similarity=0.033 Sum_probs=125.1 Q ss_pred CCcc----------ccccccccccc---cCCc---cceeeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEeccccc Q lcl|Aclame:pro 1 MNLF----------GKVVSFSRGKL---NNDT---QRVTAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDV 63 (378) Q Consensus 1 M~~f----------~~~~~~~~~~~---~~~~---~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~ 63 (378) -.+. .+...+-.+.- .... ........ .......+....+|+..+.-+-.-|+.+- .. + T Consensus 32 ~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~ivd~~~~yl~g~p~~~~-~~-~-- 107 (478) T protein:vir:10 32 LRLVREHKENIDNITMGERYYNHHPDILDAPFKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPVTFG-VD-N-- 107 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcccccccccccceeccchHHHHHHHHhhhhcccCceee-cC-C-- Confidence 0000 00000000000 0000 00000000 00112234566778888888877777641 11 0 Q ss_pred ccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe--e-------cC---Ce-- Q lcl|Aclame:pro 64 GSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F-------AD---DK-- 129 (378) Q Consensus 64 ~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~--~-------~~---~~-- 129 (378) + .....|.+.++ | ........+....+.+|.+|+++. .+..|++.-.+ | ++ +. T Consensus 108 --~----~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~-~d~~~~~~~~~~~p~~~~~v~d~~~~~~~~ 174 (478) T protein:vir:10 108 --D----KALKQIQHTLN---H---KWDDKLVDILTAASNKGIEWVQPY-VDEEGEFKTFRVPAEQAVPIWTNKERDELQ 174 (478) T ss_pred --h----HHHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEEE-ecCCCceEEEEEcccceEEEEcCCCCCceE Confidence 0 11223444443 2 344555667788999999997753 44444442211 1 00 00 Q ss_pred --------------EEEeeeEEEEEccc---------------------------c---------CCccccchH---HHH Q lcl|Aclame:pro 130 --------------KEYKPEELVRLTSP---------------------------F---------YINEDTSIL---DNA 156 (378) Q Consensus 130 --------------~~~~~~dvih~r~~---------------------------~---------~~~~~~~~~---~~~ 156 (378) ..|.++.|.+++.. + +...+.|.+ ..+ T Consensus 175 ~~ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~l 254 (478) T protein:vir:10 175 AFIRVYELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTI 254 (478) T ss_pred EEEEEEeeeCceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCCCCCCcHHHHHHH Confidence 01223333332210 0 001123322 223 Q ss_pred HHHHHH----HHh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEe--c--CCceeeecccchh Q lcl|Aclame:pro 157 LASIQT----KLE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPV--D--NKTEIVELKKDYS 224 (378) Q Consensus 157 ~~~i~~----~~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~--~g~~~~~l~~~~~ 224 (378) .++++. ..+ .+.+--++. .....+ ..+....+ + ..+++.+ + ++++|.....+.. T Consensus 255 iDa~~~~~S~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~----~-------~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (478) T protein:vir:10 255 IDALDKRLSDTQNTFDESVELIYILK-GYEGED--MKDFMHNL----K-------YYKAISVAGESGSGVDTIKVEVPID 320 (478) T ss_pred HHHHHHHHHHHHHHHHHhhCcceeee-cCCccc--ccchhhhh----h-------hCceeEecCCCCCcceEEeecCCHH Confidence 333322 111 122222221 111111 11111111 1 1123333 2 3344443333322 Q ss_pred hhhHHHHHHHHHHHHHHhCCCHHH---hcccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHH Q lcl|Aclame:pro 225 VLNKDEIDLIKSELLTGYFMNENI---LLGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRR 287 (378) Q Consensus 225 ~~~~~~~~~~~~~Ia~~fgVPp~~---l~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~ 287 (378) .. ...++.+.+.|+..-++|..- ++|+.+... ....+...|.-+++.|.+.++.. T Consensus 321 ~~-~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~------- 392 (478) T protein:vir:10 321 SV-KEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLD------- 392 (478) T ss_pred HH-HHHHHHHHHHHHHHhCCcCcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------- Confidence 21 244677788888888887532 223333221 12344445555555544433211 Q ss_pred hhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCC--CCeeeecccceecccchhccCc Q lcl|Aclame:pro 288 RVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEG--GDVYIANLNAVAVKNLSDLQGS 365 (378) Q Consensus 288 ~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~g--GD~~~~~~n~~~~~~~~~~~~~ 365 (378) .....+++.|. ...-.|.++.++.+.++ .|+++.-.+.++++.-.-+. .+.+- --+-...........+ T Consensus 393 ----~d~~~i~i~f~--~~~p~~~~e~~~~~~~~--~g~iS~et~i~~~~~v~d~~~E~~ri~-~E~~~~~~~~~~~~~~ 463 (478) T protein:vir:10 393 ----VRVQDIEITFN--FNVMVNELENSQIAMNS--TGLLSKETILGNHSWVQDPVAEMERIE-QENIELNQQLPDIEEG 463 (478) T ss_pred ----cccccceEEeC--CCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHH-HHHHHHHHhccccCCC Confidence 11223455554 34556888888888776 68999877877775421111 00000 0000000000111111 Q ss_pred cCCCCCCCCCCC--C Q lcl|Aclame:pro 366 RKDVTSTDETNN--Q 378 (378) Q Consensus 366 ~~~~~~~~e~~~--e 378 (378) ..+++.+.++++ | T Consensus 464 ~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 464 LNDEQQRQSEDNQSE 478 (478) T ss_pred CcccccccCcCCCCC Confidence 122221222222 2 No 210 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=62.44 E-value=0.33 Score=23.19 Aligned_cols=351 Identities=13% Similarity=0.097 Sum_probs=119.7 Q ss_pred CCccccccccccccc---c-CCccceee------cccc-------hhhh----------------------hhHHHHHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKL---N-NDTQRVTA------WQNE-------AVEY----------------------TSAFVTNIH 41 (378) Q Consensus 1 M~~f~~~~~~~~~~~---~-~~~~~~~~------~~~~-------~~~~----------------------~~~~v~~~i 41 (378) ||+|.+++.+.+.-. . -+...++. .... ...| +...-..++ T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIARTAS 80 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchHHHHH Confidence 999988776543110 0 00000110 0000 0000 001112233 Q ss_pred HHHHhhhccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE Q lcl|Aclame:pro 42 NKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL 121 (378) Q Consensus 42 ~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~ 121 (378) +.+|+-+..=|..+-- . + +..+..|.++|. -| ......+..+...+..|.+++.+.++++.-++- T Consensus 81 ~~~A~lv~~e~~~i~v---~----d---~~~~~~l~~~l~--~n---~f~~~~~~~~e~a~a~G~~a~k~~~d~~~~~i~ 145 (522) T protein:vir:47 81 KKIASLVYNEQATITT---K----N---EILQKFLDDMLT--ND---RFNKNFERYLESCLALGGLAMRPYIDGDKVRVA 145 (522) T ss_pred HHHhhhhcCCcceeec---C----C---hHHHHHHHHHHh--hc---chHHHHHHHHHHhhccCCEEEEEEEcCCceEEE Confidence 3333333322222100 0 0 012223444443 12 223334455666666676666555443211111 Q ss_pred E-----Eee---cCCeE------------------EEe---eeE----------------EEEEccccCCc-cccc-hHH Q lcl|Aclame:pro 122 D-----LLF---ADDKK------------------EYK---PEE----------------LVRLTSPFYIN-EDTS-ILD 154 (378) Q Consensus 122 ~-----~~~---~~~~~------------------~~~---~~d----------------vih~r~~~~~~-~~~~-~~~ 154 (378) . ++| +.+.+ .|. ..+ -.||+|.++-. ...+ ..+ T Consensus 146 ~v~ad~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~ 225 (522) T protein:vir:47 146 FIQAPVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQR 225 (522) T ss_pred EEcCCceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCcc Confidence 1 111 11100 010 000 01222211100 0000 000 Q ss_pred HHHHHHHHH---------HhcCCcce-eeeeCC-------------cCC--HH---HHHHHHHHHHHHHHHhhcccc--- Q lcl|Aclame:pro 155 NALASIQTK---------LEQGKLRG-LLKINA-------------FLD--ID---NTQEYREKALTTIKNMQEGSS--- 203 (378) Q Consensus 155 ~~~~~i~~~---------~~~~~~~g-il~~~~-------------~l~--~~---~~~~~~~~~~~~~~~~~~~~~--- 203 (378) ..+..+... .+-.+|-. .+..+. .++ .+ +.++.-.+|...++ .|.. T Consensus 226 v~l~~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~---~g~~~i~ 302 (522) T protein:vir:47 226 VNLSELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVR---MGQRRVI 302 (522) T ss_pred ccccccccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHH---hccceee Confidence 001111000 00111211 111110 000 00 11111222222221 1100 Q ss_pred ------------ccc----eeEec--------------CCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCHHHhcc- Q lcl|Aclame:pro 204 ------------YNG----LTPVD--------------NKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILLG- 251 (378) Q Consensus 204 ------------~~~----~~~l~--------------~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~~- 251 (378) .++ ..+.+ ++-.++.++..-.+-+ .+.++.+.+.|+...|++|..++. T Consensus 303 v~~~~l~~~~~~~~g~~~~~~~fd~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~ 382 (522) T protein:vir:47 303 VPEHLTQRQYQRPDGTIDFRPRFDVEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFD 382 (522) T ss_pred cchHHhccCCCCCCcccccccccCcccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCcc Confidence 000 00011 1112222222222222 123455667889999999987752 Q ss_pred -----cchHHH------------HHHHHHHHHHHHHHHHHHHHHh-hcCChhHHhhhccccceeeEEecchhhhhcCHHH Q lcl|Aclame:pro 252 -----TASQEQ------------QIYFYNSTIIPLLIQLEKELTY-KLISTNRRRVVKGNLYYERIIVDNQLFKFATLKE 313 (378) Q Consensus 252 -----~~~e~~------------~~~f~~~~l~P~~~~ie~~l~~-~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~ 313 (378) |++|.. .+..++.+|..++..|.+-.+. .++. ......+.+.+.| +.-...|..+ T Consensus 383 ~~~~kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~-----~~~~~~~~i~v~f--~D~i~~D~~~ 455 (522) T protein:vir:47 383 GQGMKTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYS-----GEIPELDDISVNL--DDGVFTDRHA 455 (522) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-----CCCCCcceeEEEc--CCCCCCCHHH Confidence 233321 1234455555555555433321 1111 0112233444444 4556788899 Q ss_pred HHHHHHHHHhCCCCCHHHHHHHh-CCCCCCCCCeee--ecccceecccchhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 314 LIDLYHENINGPIFTQNQLLVKM-GEQPIEGGDVYI--ANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 314 ~~~~~~~~~~~G~~t~NE~R~~~-gl~p~~gGD~~~--~~~n~~~~~~~~~~~~~~~~~~~~~e~~~e 378 (378) .++...+++.+|+|++-+++... |++.- ..++-+ +..-..+.... .......+.++...+++| T Consensus 456 ~~~~~~~~v~aG~~s~e~~i~~~~g~~ee-ea~~el~ri~~E~~~~~~~-~~~~~~~~~~~~~~~d~~ 521 (522) T protein:vir:47 456 ELDYWAKMVAAGFSTKKRAIGKTLNISGV-EAEKELNAINSELLPMNDA-ELAIYGMHDQNEEKADDK 521 (522) T ss_pred HHHHHHHHHhcCCCCHHHHHHhcCCCChH-HHHHHHHHHHHhhccCCCC-CCCCCCCCCcccccCCCC Confidence 99999999999999999987653 55321 111100 00000010000 000001111222223333 No 211 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=59.22 E-value=0.4 Score=22.79 Aligned_cols=329 Identities=12% Similarity=0.026 Sum_probs=130.6 Q ss_pred CC-----cccc------------cccccccc---------ccCCccceeecccchhhhhhHHHHHHHHHHHhhhccCceE Q lcl|Aclame:pro 1 MN-----LFGK------------VVSFSRGK---------LNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFN 54 (378) Q Consensus 1 M~-----~f~~------------~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~ 54 (378) +. ++.. ...+-.|. ....................+....+|+..++-+-+-|+. T Consensus 20 ~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~Ivd~~~~~l~g~p~~ 99 (479) T protein:vir:79 20 STINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIV 99 (479) T ss_pred ChhHHHHHHHHHHhhhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcCCce Confidence 00 0000 00000000 0000000000000001122344566778888777777766 Q ss_pred EEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE----------e Q lcl|Aclame:pro 55 HVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL----------L 124 (378) Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~----------~ 124 (378) +- ..+ . .. ..+.+.+.. | ........++...+.+|.+|.++. .+..|++.-. | T Consensus 100 ~~---~~~----~---~~-~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~-~d~~~~~~i~~~~p~~~~~v~ 162 (479) T protein:vir:79 100 FN---ADD----D---NL-TKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPY-INRKGEFKYVIIPAEEAIPIW 162 (479) T ss_pred ec---cCC----H---HH-HHHHHHHHh--c---CHHHHHHHHHHHHHhcCeEEEEEE-eCCCCceEEEEEccceeEEEE Confidence 41 110 0 01 112233321 3 234455667788999999988753 4444443211 1 Q ss_pred ---------------e----cCCeE----EEeeeEEEEEcccc------------------------------------- Q lcl|Aclame:pro 125 ---------------F----ADDKK----EYKPEELVRLTSPF------------------------------------- 144 (378) Q Consensus 125 ---------------~----~~~~~----~~~~~dvih~r~~~------------------------------------- 144 (378) . .+... .|.++.+.|++... T Consensus 163 d~~~~~~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPv 242 (479) T protein:vir:79 163 DSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPF 242 (479) T ss_pred eCCCCCceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccE Confidence 0 00000 12223333332100 Q ss_pred ----CCccccchH---HHHHHHHHH----HHh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeE Q lcl|Aclame:pro 145 ----YINEDTSIL---DNALASIQT----KLE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTP 209 (378) Q Consensus 145 ----~~~~~~~~~---~~~~~~i~~----~~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (378) +...+.|.+ ..+.++++. ..+ .+.|-.++. +. +.+...+ +.... ..++++. T Consensus 243 v~~~nn~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~--g~-~~~~~~~----~~~~~-------~~~~~i~ 308 (479) T protein:vir:79 243 IPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLK--EY-PGTSLQE----FIDNI-------RYYKSIK 308 (479) T ss_pred EEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeee--cC-Ccccccc----chhhh-------hhcccee Confidence 001122222 222333322 111 122222322 21 1111111 11111 1234566 Q ss_pred ecCCceeeecccchhhhh-HHHHHHHHHHHHHHhCCCHHHhc--ccchHH--------------HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 210 VDNKTEIVELKKDYSVLN-KDEIDLIKSELLTGYFMNENILL--GTASQE--------------QQIYFYNSTIIPLLIQ 272 (378) Q Consensus 210 l~~g~~~~~l~~~~~~~~-~~~~~~~~~~Ia~~fgVPp~~l~--~~~~e~--------------~~~~f~~~~l~P~~~~ 272 (378) ++++.+++-+..+..... ...++.+.+.|+..-++|..-.. |+.+.. .....+...|..+++. T Consensus 309 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~l 388 (479) T protein:vir:79 309 VDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWF 388 (479) T ss_pred cCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 666655555543322222 24457778888888888764332 222211 1223455566666666 Q ss_pred HHHHHHhhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeeccc Q lcl|Aclame:pro 273 LEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLN 352 (378) Q Consensus 273 ie~~l~~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n 352 (378) +...++.+-- .......+++.|. .-.-.|.++.++.+.++ .|+++...+.+++++-+ +-+. - T Consensus 389 i~~~~~~~~~-------~~~~~~~i~i~f~--~~~p~~~~~~a~~~~kl--~g~iS~et~l~~l~~v~--d~~~-----E 450 (479) T protein:vir:79 389 VCEYLKISGN-------KSYDYKTVQITFN--HSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVE--DVND-----E 450 (479) T ss_pred HHHHHhccCC-------CccccccceEEeC--CCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCC--CHHH-----H Confidence 6555543211 0111233455553 44556889999998887 48999888888775422 1100 0 Q ss_pred ceecccc--hhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 353 AVAVKNL--SDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 353 ~~~~~~~--~~~~~~~~~~~~~~e~~~e 378 (378) +..+..- ...+..+......+..++| T Consensus 451 ~~ri~~E~~~~~~~~~~~~~~~~~~~~e 478 (479) T protein:vir:79 451 LERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) T ss_pred HHHHHHHHHHHHHHHhccCcccCCCcCc Confidence 1111100 0001111112222223333 No 212 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=56.16 E-value=0.46 Score=22.42 Aligned_cols=337 Identities=13% Similarity=0.046 Sum_probs=129.9 Q ss_pred CCccc-cccccc---------------------------cccccCCccc-----eeecccchhhhhhHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MNLFG-KVVSFS---------------------------RGKLNNDTQR-----VTAWQNEAVEYTSAFVTNIHNKIANE 47 (378) Q Consensus 1 M~~f~-~~~~~~---------------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~ 47 (378) |++.- ++.-+. ..++.+.-.- ..... .......++....|+..++- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~~-~~~ki~~n~~~~ivd~~~~~ 79 (453) T protein:vir:73 1 MNLKPIKLMTYSRDEEITDKVVNDFMKKHQEEVERYEYLGNMYKGIMEISSQKAKDSWK-PDNRLTNNFAKYIVDTFVGY 79 (453) T ss_pred CccccceeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcCCCCCccC-ccceeecchHHHHHHHhhhh Confidence 22210 000000 0000000000 00000 00111233445566766666 Q ss_pred hccCceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEE--ee Q lcl|Aclame:pro 48 ITKVEFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDL--LF 125 (378) Q Consensus 48 ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~--~~ 125 (378) +-.-|+.+- . .+ ......+.+++.. | ........+..+.+.+|.||+++. .+..|.+.-. -| T Consensus 80 l~g~~~~~~-~--~d-------~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~-~d~~~~~~i~~~~p 143 (453) T protein:vir:73 80 FNGIPIKKT-H--DD-------KSVLEAMQLFDNL--N---DMEDEESELAKIACVYGRAYELMY-QNESTESEVIYCSP 143 (453) T ss_pred hcccCceee-c--CC-------hHHHHHHHHHHHh--c---ChhHHHHHHHHHHHhcCeEEEEEE-eCCCCceEEEEEcc Confidence 655565431 1 10 1122345555432 2 333455667889999999998763 4555554211 11 Q ss_pred --------cC----------------CeE---EEeeeEEEEEccc-------------cC---------Cccccc---hH Q lcl|Aclame:pro 126 --------AD----------------DKK---EYKPEELVRLTSP-------------FY---------INEDTS---IL 153 (378) Q Consensus 126 --------~~----------------~~~---~~~~~dvih~r~~-------------~~---------~~~~~~---~~ 153 (378) +. +.. .|..+.+++++.. ++ ...+.| ++ T Consensus 144 ~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v 223 (453) T protein:vir:73 144 LNVFMVYDDSIKQKPLFAVYYGFDEEGNLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPV 223 (453) T ss_pred cceEEEEeCCCCceeEEEEEEEEecCceEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecCCCCCCcchhhH Confidence 00 000 1233344443210 00 001222 22 Q ss_pred HHHHHHHHH----HHh----cCCcceeeeeCCcCCHHHHHHHHHHHHHHHHHhhccccccceeEecCCceeeecccchhh Q lcl|Aclame:pro 154 DNALASIQT----KLE----QGKLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSV 225 (378) Q Consensus 154 ~~~~~~i~~----~~~----~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~ 225 (378) ..+.++++. ..+ .+.|.-++ ....++++.....+.. ..- .......+.....+.+.+++-+...... T Consensus 224 ~~liDa~~~~~S~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 298 (453) T protein:vir:73 224 HSLINSYNKVTSEKANDVEYFSDQYLVF-LGAEVDEEDAKNIKDN---RLI-NFFDKNSNGQGTNAAKVDVKFLDKPDSD 298 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHhccceeee-ecCCCCchhhhccccc---ccc-cccccccccccccccCceeEEeeecCCH Confidence 233333322 111 22333333 2223333332222111 000 0000111112223344444444432222 Q ss_pred hh-HHHHHHHHHHHHHHhCCCHHHhc--ccchHH--------------HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHh Q lcl|Aclame:pro 226 LN-KDEIDLIKSELLTGYFMNENILL--GTASQE--------------QQIYFYNSTIIPLLIQLEKELTYKLISTNRRR 288 (378) Q Consensus 226 ~~-~~~~~~~~~~Ia~~fgVPp~~l~--~~~~e~--------------~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~ 288 (378) .. ...++.+.+.|+..-++|..-.. |+.+.. .....+...|...++.+..-++..-- T Consensus 299 ~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~------ 372 (453) T protein:vir:73 299 VQTENLLNRLERSIFQFTMAANISDENFGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASN------ 372 (453) T ss_pred HHHHHHHHHHHHHHHHHhCCcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------ Confidence 22 23457778888888888753221 222211 12235556666666666544432211 Q ss_pred hhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCccCC Q lcl|Aclame:pro 289 VVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKD 368 (378) Q Consensus 289 ~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~ 368 (378) ......+++.| ..-...|.++.++.+.+++ |+++..-+.+++++-+-|..+ +..+..-.+.+..+.. T Consensus 373 --~~~~~~i~v~f--~~~~p~~~~~~a~~~~k~~--giis~et~~~~~~~~~d~~~E-------~~ri~~E~~~~~~~~~ 439 (453) T protein:vir:73 373 --KDAWKDIEYTF--TRNEPKDIKEQAETANILK--GITSEETALSVISVIPDVQAE-------MEKIKKKKLLQLSLTR 439 (453) T ss_pred --ccccccceEEe--CCCCCCCHHHHHHHHHHHh--ccCcHHHHHHhCCCCCCHHHH-------HHHHHHHHHHHHHHHH Confidence 11112345555 3456678999999999886 789987777777653211110 0011110010000100 Q ss_pred CCCCCCCCCC Q lcl|Aclame:pro 369 VTSTDETNNQ 378 (378) Q Consensus 369 ~~~~~e~~~e 378 (378) .......+.+ T Consensus 440 ~~~~~~~~~~ 449 (453) T protein:vir:73 440 TSNLVRMKQM 449 (453) T ss_pred hccCCcchhh Confidence 0011111111 No 213 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=49.61 E-value=0.63 Score=21.67 Aligned_cols=348 Identities=11% Similarity=0.118 Sum_probs=134.6 Q ss_pred CCccccccccccccccCCccceeecccchhhhhhHHHHHHHHHHHhhhccC-----ceEEEEecccccccccceeccCch Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKV-----EFNHVKYKKSDVGSDTLISMAGSD 75 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~-----p~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) =|+|+..... .+.+.+...-+..+++ ....|.|..||+.|.+.+.-. |+.+- ..+....++........ T Consensus 51 ~g~~~~~~d~-~~~~~~~~~LI~~YR~---ma~~pEvd~Av~eIvneaiv~d~~~~pV~l~--l~~~e~s~sik~kI~ee 124 (516) T protein:vir:10 51 NALMQQFFGI-DNNISGTKDLINTYRQ---LTNNPEVERAVANIVNEAVVYEKGHKVVSLD--LDDTEFSSSIKDKILEE 124 (516) T ss_pred cceeeeeecc-cCccccHHHHHHHHHH---hhhccchhHHHHHhhcceeEecCCCceEEEE--ecccccchHHHHHHHHH Confidence 1111111110 0111111111111111 124567889999999887432 22221 00000111111112233 Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEeecCCeE------------------------- Q lcl|Aclame:pro 76 LDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADDKK------------------------- 130 (378) Q Consensus 76 l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~~~~~~~------------------------- 130 (378) +.++|+. ++...--+.++..|.+.|..|..++.++...-+.++.+.+... T Consensus 125 F~~Il~l-----l~F~~~~~~~fR~WYVDgRi~fhKiid~~k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~ 199 (516) T protein:vir:10 125 FDEICRL-----LDASRKLDTLFRRWYIDSRIFFHKIMPNPKEGIVELRRLDPRHVEYYREIVTSDVGGTSVVKGYREFF 199 (516) T ss_pred HHHHHHH-----hccchhhhHHHHhhhhcceEEEEEEecCcccceeeeeeeCCcceeeEEeeecccCcchhhhhceeeee Confidence 4444432 2222223445678899999988766554333344433321100 Q ss_pred --------------EEe-------eeEEEEEcc----ccCCccccchHHHHHHHHHH------HH----hcCCc-ceeee Q lcl|Aclame:pro 131 --------------EYK-------PEELVRLTS----PFYINEDTSILDNALASIQT------KL----EQGKL-RGLLK 174 (378) Q Consensus 131 --------------~~~-------~~dvih~r~----~~~~~~~~~~~~~~~~~i~~------~~----~~~~~-~gil~ 174 (378) .|. +.+.|++-. +.....++|=+..|.+.++. ++ -.-.| +-|+- T Consensus 200 ~Y~~~~~~~~~~g~~~~~~~~ikI~~daI~y~hSGl~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFY 279 (516) T protein:vir:10 200 VYTTGNEGYAYNGRLFEPNTRIKIPRSAIVYAHSGLQDCSDRGIVGYLHNAVKPANQLKLLEDALVIYRITRAPERRVFY 279 (516) T ss_pred eeecCccceeccccccCCCCceecchhheeeeecCcccCCCCceeceehhhhHhHHhhHHHHhhHHHHhhhccccceEEE Confidence 011 112233221 11222234444555443322 11 11122 22332 Q ss_pred eC-CcCCHHHHHHHHHHHHHHHHHhh-----cc--ccccce--------eEe---cCCceeeecccchhhhhHHHHHHHH Q lcl|Aclame:pro 175 IN-AFLDIDNTQEYREKALTTIKNMQ-----EG--SSYNGL--------TPV---DNKTEIVELKKDYSVLNKDEIDLIK 235 (378) Q Consensus 175 ~~-~~l~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~--------~~l---~~g~~~~~l~~~~~~~~~~~~~~~~ 235 (378) .+ +.|+...+.+....+..+++... +| .+.-+. ++- +.|.+++.|.-...--+++..++.+ T Consensus 280 IDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~ 359 (516) T protein:vir:10 280 IDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVTSLPGAQTMGEMDDVRWFN 359 (516) T ss_pred EecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHH Confidence 22 33444333333333333333211 11 000011 111 2345555554322223467778889 Q ss_pred HHHHHHhCCCHHHhc---------ccchHHHHH-----HHHHHHHHHHHHHHHHHHHh-----hcCChhHHhhhccccce Q lcl|Aclame:pro 236 SELLTGYFMNENILL---------GTASQEQQI-----YFYNSTIIPLLIQLEKELTY-----KLISTNRRRVVKGNLYY 296 (378) Q Consensus 236 ~~Ia~~fgVPp~~l~---------~~~~e~~~~-----~f~~~~l~P~~~~ie~~l~~-----~Ll~~~~~~~g~~~~~~ 296 (378) +.+.++++||.+.|. |..+|-.+. -|+..-=.-+...+.+.|.+ ..+++.|+..- ... T Consensus 360 kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i---~~~ 436 (516) T protein:vir:10 360 KKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDELDFRKFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQ---INN 436 (516) T ss_pred HHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH---hhc Confidence 999999999998773 333443332 23222112233345555555 44677777652 234 Q ss_pred eeEEecchhhhhcC------HHHHHHHHHHHH--hCCCCCHHHHHH-HhCCCCCCCCCeeeecccceecccchhccCccC Q lcl|Aclame:pro 297 ERIIVDNQLFKFAT------LKELIDLYHENI--NGPIFTQNQLLV-KMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRK 367 (378) Q Consensus 297 ~~~~~d~~~l~~~d------~~~~~~~~~~~~--~~G~~t~NE~R~-~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~ 367 (378) ++++|..+.-. .. +..|+.++..+- -+.+++.+=+|+ .|.++-.+ +. ..++.-++ T Consensus 437 I~~~f~~Dn~f-~ElKe~Eil~~Rl~~l~~~dpyvGky~s~~yi~k~ILr~tDee-----------i~----~~~k~I~~ 500 (516) T protein:vir:10 437 IKVNFHQDSYY-TELKDIETLRQRVDALSQIEPYVGKYVSHDYVMKNILQMTDEQ-----------IA----QEEKQIEK 500 (516) T ss_pred ceEEeeecchH-HHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhH-----------HH----HHHHHHHH Confidence 55555433211 11 123444433332 234566666654 34443210 00 00000001 Q ss_pred CCCCC--CCCCCC Q lcl|Aclame:pro 368 DVTST--DETNNQ 378 (378) Q Consensus 368 ~~~~~--~e~~~e 378 (378) +.+++ .+.++| T Consensus 501 E~~~~~~~~p~~e 513 (516) T protein:vir:10 501 EANVKRFQNPENE 513 (516) T ss_pred hhhCCCCCCCCcc Confidence 11111 111111 No 214 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=44.44 E-value=0.81 Score=21.10 Aligned_cols=346 Identities=9% Similarity=0.002 Sum_probs=122.6 Q ss_pred CCcccccccccc------------------ccccCCccce---eeccc----chhhhhhHHHHHHHHHHHhhhccCceEE Q lcl|Aclame:pro 1 MNLFGKVVSFSR------------------GKLNNDTQRV---TAWQN----EAVEYTSAFVTNIHNKIANEITKVEFNH 55 (378) Q Consensus 1 M~~f~~~~~~~~------------------~~~~~~~~~~---~~~~~----~~~~~~~~~v~~~i~~ia~~ia~~p~~~ 55 (378) |++-+....+.. -++.+....+ ..... .....+......+++..|+-+..-|..+ T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~k~i~~~~a~~l~~~p~~i 95 (496) T protein:vir:38 16 MGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKI 95 (496) T ss_pred hccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccccceeecchHHHHHHHHhhhhhCCcceE Confidence 332111111100 0011100000 00000 0000112333556777777776666553 Q ss_pred EEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEE-EE------ee--- Q lcl|Aclame:pro 56 VKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELL-DL------LF--- 125 (378) Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~-~~------~~--- 125 (378) -- + + ......|.+++. .-....-...++.+.+..|.+|+.+.+ +..|.+. .+ +| T Consensus 96 ~~-~--d-------~~~~e~l~~~~~-----~n~f~~~~~~~~~~a~~~G~~~~~~~~-D~~~~~~i~~v~~~~~~P~~~ 159 (496) T protein:vir:38 96 NI-D--D-------KAAEEFVLNVLK-----TNGFTKNMERYIEYGEAMGGFVIKVYH-DGNKNVKVSFATADCMYPLSN 159 (496) T ss_pred ee-C--C-------hHHHHHHHHHHh-----ccCHHHHHHHHHHHHhhhCcEEEEEEE-cCCCcEEEEEEcccceEEEEe Confidence 11 0 0 011123444443 123445566678888899999888764 4344432 11 11 Q ss_pred cCCeEE-------EeeeE--------------EEEEccccC----Cccccch--HHHHHHHHH---HHHhcCCcceee-e Q lcl|Aclame:pro 126 ADDKKE-------YKPEE--------------LVRLTSPFY----INEDTSI--LDNALASIQ---TKLEQGKLRGLL-K 174 (378) Q Consensus 126 ~~~~~~-------~~~~d--------------vih~r~~~~----~~~~~~~--~~~~~~~i~---~~~~~~~~~gil-~ 174 (378) +++.+. +..++ -.++++..+ ....-.+ +......+. ...+-.+|..+. . T Consensus 160 ~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~~ 239 (496) T protein:vir:38 160 DSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYIK 239 (496) T ss_pred cCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCCCcceEEEec Confidence 111110 00000 011111100 0000000 000000010 000111111111 0 Q ss_pred eC-------------CcCCH-----HHHHHHHHHHHHHHHHh----------h--ccccccce-e----------E---- Q lcl|Aclame:pro 175 IN-------------AFLDI-----DNTQEYREKALTTIKNM----------Q--EGSSYNGL-T----------P---- 209 (378) Q Consensus 175 ~~-------------~~l~~-----~~~~~~~~~~~~~~~~~----------~--~~~~~~~~-~----------~---- 209 (378) .+ +.+.. ++.++...+|.+.++.. . .....|.. . . T Consensus 240 ~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~v~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 319 (496) T protein:vir:38 240 PNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGSTTQYFDSTDEAFFLYQGD 319 (496) T ss_pred CCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccceecchHHhhccCCCCCccccCCCCccceEEEeecC Confidence 00 01100 01111112222211100 0 00000000 0 0 Q ss_pred -ecCCceeeecccchhhh-hHHHHHHHHHHHHHHhCCCHHHhccc------chHHHH------------HHHHHHHHHHH Q lcl|Aclame:pro 210 -VDNKTEIVELKKDYSVL-NKDEIDLIKSELLTGYFMNENILLGT------ASQEQQ------------IYFYNSTIIPL 269 (378) Q Consensus 210 -l~~g~~~~~l~~~~~~~-~~~~~~~~~~~Ia~~fgVPp~~l~~~------~~e~~~------------~~f~~~~l~P~ 269 (378) .+++..++.++.+-..- -.+.++.+..+|+...|+||..++.. +++... ...++.+|..+ T Consensus 320 ~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l~~l 399 (496) T protein:vir:38 320 QDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEM 399 (496) T ss_pred CCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 01112233333222111 13445666788999999999988632 222110 12333444444 Q ss_pred HHHHHHHHHhhcCChhHHhhhc-cccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHh-CCCCCCCCCee Q lcl|Aclame:pro 270 LIQLEKELTYKLISTNRRRVVK-GNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKM-GEQPIEGGDVY 347 (378) Q Consensus 270 ~~~ie~~l~~~Ll~~~~~~~g~-~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~-gl~p~~gGD~~ 347 (378) ++.+-.-.+.... ..|. .....+.+.|+ .-...|..+.++.+.+++.+|+++.-.++... |.+. +.-++. T Consensus 400 ~~~il~~~~~~~~-----~~g~~~~~~~i~v~f~--d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~~~~~d-~ea~~e 471 (496) T protein:vir:38 400 IVSILEVGKFIEA-----YSGEVVELDTITVDFD--DSIAQDEDTTINRYTNAKNQGMIPLKIALQRAWNITE-AEADEW 471 (496) T ss_pred HHHHHHHHHHHHh-----hcCCCCCccceEEEeC--CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCh-HHHHHH Confidence 4444332221111 0111 11233455554 44567888999999999999999988887643 3321 111111 Q ss_pred eecccceecccchhccCc--cCCCCCCCCCCCC Q lcl|Aclame:pro 348 IANLNAVAVKNLSDLQGS--RKDVTSTDETNNQ 378 (378) Q Consensus 348 ~~~~n~~~~~~~~~~~~~--~~~~~~~~e~~~e 378 (378) ++...+.+.. ..++..+-.+++| T Consensus 472 --------l~ri~~E~~~~~~~~d~~~~~~~~e 496 (496) T protein:vir:38 472 --------AEMLAKEKQAEMPNNDMNGIFGEEE 496 (496) T ss_pred --------HHHHHHhhhccCccccccCCCCCCC Confidence 1111111110 1112122233333 No 215 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=37.35 E-value=1.1 Score=20.31 Aligned_cols=346 Identities=12% Similarity=0.098 Sum_probs=133.1 Q ss_pred CCcccccccccc------------------------ccccCCc------cceeecccchhhhhhHHHHHHHHHHHhhhcc Q lcl|Aclame:pro 1 MNLFGKVVSFSR------------------------GKLNNDT------QRVTAWQNEAVEYTSAFVTNIHNKIANEITK 50 (378) Q Consensus 1 M~~f~~~~~~~~------------------------~~~~~~~------~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~ 50 (378) =.+-.+..++.. .++.... .-+..+ ..-+..|.|.+||+.|.+.+.- T Consensus 20 ~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~Y---R~ma~~pEvd~Av~eIVneaiv 96 (516) T protein:vir:10 20 ERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTY---RQLINNPEVERAVANIVNEAIV 96 (516) T ss_pred hhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHH---HHHhhccchhhHHHHhhcceeE Confidence 111111111110 0000000 000011 1123567799999999988743 Q ss_pred C-----ceEEE-EecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe Q lcl|Aclame:pro 51 V-----EFNHV-KYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL 124 (378) Q Consensus 51 ~-----p~~~~-~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~ 124 (378) . |+.+- ..++ ..++........+.++|+. =|-...+ +.++..|.+.|..|..++.++...-+.++. T Consensus 97 ~d~~~~pV~l~L~~~~---~s~~ik~kI~eeF~~Il~l-l~F~~~~----~~~fR~WYVDgRi~fhKiid~~k~GI~Elr 168 (516) T protein:vir:10 97 YERGHKVVSLDLDDTD---FGSNVKEKILEEFDEVCRL-LDASRKL----DTLFRRWYVDSRIFFHKIMPNPKKGIAELR 168 (516) T ss_pred ecCCCceEEEEecccC---cchHHHHHHHHHHHHHHHH-hccchhh----hHHHhhhhhcceEEEEEEecCccccceeee Confidence 2 22221 1111 1111111122334444442 1222233 445678899999988766554333333333 Q ss_pred ecCC-----------------------------------------------eEEEeeeEEEEEcc----ccCCccccchH Q lcl|Aclame:pro 125 FADD-----------------------------------------------KKEYKPEELVRLTS----PFYINEDTSIL 153 (378) Q Consensus 125 ~~~~-----------------------------------------------~~~~~~~dvih~r~----~~~~~~~~~~~ 153 (378) +.+. .+.++. +.|++-+ +......+|=+ T Consensus 169 ~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~-dAI~y~hSGL~d~~~~~i~syL 247 (516) T protein:vir:10 169 RLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPR-SAVVYASSGLMDCSDRGIIGYL 247 (516) T ss_pred eeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeech-hheeeecccceeCCCCceeeee Confidence 2111 111222 3333321 11222334545 Q ss_pred HHHHHHHHH------HH----hcCCc-ceeeeeC-CcCCHHHHHHHHHHHHHHHHHhh-----cc--ccccce------- Q lcl|Aclame:pro 154 DNALASIQT------KL----EQGKL-RGLLKIN-AFLDIDNTQEYREKALTTIKNMQ-----EG--SSYNGL------- 207 (378) Q Consensus 154 ~~~~~~i~~------~~----~~~~~-~gil~~~-~~l~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~------- 207 (378) ..|.+.++. ++ -.-.| +-|+-.+ +.|+...+.+....+..+++... +| .+.-+. T Consensus 248 hkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDy 327 (516) T protein:vir:10 248 HNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDY 327 (516) T ss_pred hhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhh Confidence 555443322 11 11122 2233222 33444333333333333333211 11 000011 Q ss_pred -eEe---cCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHhc---------ccchHHHHH--HHHHHHHHH---- Q lcl|Aclame:pro 208 -TPV---DNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILL---------GTASQEQQI--YFYNSTIIP---- 268 (378) Q Consensus 208 -~~l---~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~---------~~~~e~~~~--~f~~~~l~P---- 268 (378) ++- +.|.+++.|.-...--+++..++.++.+.++++||.+.|. |..+|-.+. .|.+. |.- T Consensus 328 WLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KF-I~rLR~r 406 (516) T protein:vir:10 328 WLMRRDGKSVTEVSSLPGAQTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKF-VVQLQHD 406 (516) T ss_pred cccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHH-HHHHHHH Confidence 111 2345555554322222467778889999999999998773 333443332 22221 322 Q ss_pred HHHHHHHHHHhhc-----CChhHHhhhccccceeeEEecchhhhhcC------HHHHHHHHHHHH--hCCCCCHHHHHH- Q lcl|Aclame:pro 269 LLIQLEKELTYKL-----ISTNRRRVVKGNLYYERIIVDNQLFKFAT------LKELIDLYHENI--NGPIFTQNQLLV- 334 (378) Q Consensus 269 ~~~~ie~~l~~~L-----l~~~~~~~g~~~~~~~~~~~d~~~l~~~d------~~~~~~~~~~~~--~~G~~t~NE~R~- 334 (378) +...+.+.|...| +++.|+..- .-.++++|..+.-. .. +..|+.++..+- -+.+++.+=+|+ T Consensus 407 Fs~lf~~~L~~qLilKgiit~eew~~i---~~~I~~~f~~Dn~f-~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ 482 (516) T protein:vir:10 407 FEEIFLDPLKTNLIYKRIITEDEWDEQ---INNIKVNFHQDSYY-TELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKN 482 (516) T ss_pred HHHHHHHHHHHhhhhccCCCHHHHHHH---hhcceEEeeecchH-HHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHH Confidence 3333344444443 566777652 23455555433211 11 123444433332 234566666654 Q ss_pred HhCCCCCCCCCeeeecccceecccchhccCccCCCCCC--CCCCC-C Q lcl|Aclame:pro 335 KMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST--DETNN-Q 378 (378) Q Consensus 335 ~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~--~e~~~-e 378 (378) .|.++--+ +. ..++.-+++.+++ .+.++ + T Consensus 483 ILr~tDee-----------i~----~e~k~I~~E~~~~~~~~p~~~~ 514 (516) T protein:vir:10 483 ILQMTEEQ-----------IA----QEEKQIEQEAGIKRFQNPENED 514 (516) T ss_pred HhcCCHhh-----------HH----HHHHHHHHhhhCCCCCCCCccc Confidence 34443210 00 0000000111111 11111 1 No 216 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=37.35 E-value=1.1 Score=20.31 Aligned_cols=346 Identities=12% Similarity=0.098 Sum_probs=133.1 Q ss_pred CCcccccccccc------------------------ccccCCc------cceeecccchhhhhhHHHHHHHHHHHhhhcc Q lcl|Aclame:pro 1 MNLFGKVVSFSR------------------------GKLNNDT------QRVTAWQNEAVEYTSAFVTNIHNKIANEITK 50 (378) Q Consensus 1 M~~f~~~~~~~~------------------------~~~~~~~------~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~ 50 (378) =.+-.+..++.. .++.... .-+..+ ..-+..|.|.+||+.|.+.+.- T Consensus 20 ~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~Y---R~ma~~pEvd~Av~eIVneaiv 96 (516) T protein:vir:10 20 ERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTY---RQLINNPEVERAVANIVNEAIV 96 (516) T ss_pred hhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHH---HHHhhccchhhHHHHhhcceeE Confidence 111111111110 0000000 000011 1123567799999999988743 Q ss_pred C-----ceEEE-EecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe Q lcl|Aclame:pro 51 V-----EFNHV-KYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL 124 (378) Q Consensus 51 ~-----p~~~~-~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~ 124 (378) . |+.+- ..++ ..++........+.++|+. =|-...+ +.++..|.+.|..|..++.++...-+.++. T Consensus 97 ~d~~~~pV~l~L~~~~---~s~~ik~kI~eeF~~Il~l-l~F~~~~----~~~fR~WYVDgRi~fhKiid~~k~GI~Elr 168 (516) T protein:vir:10 97 YERGHKVVSLDLDDTD---FGSNVKEKILEEFDEVCRL-LDASRKL----DTLFRRWYVDSRIFFHKIMPNPKKGIAELR 168 (516) T ss_pred ecCCCceEEEEecccC---cchHHHHHHHHHHHHHHHH-hccchhh----hHHHhhhhhcceEEEEEEecCccccceeee Confidence 2 22221 1111 1111111122334444442 1222233 445678899999988766554333333333 Q ss_pred ecCC-----------------------------------------------eEEEeeeEEEEEcc----ccCCccccchH Q lcl|Aclame:pro 125 FADD-----------------------------------------------KKEYKPEELVRLTS----PFYINEDTSIL 153 (378) Q Consensus 125 ~~~~-----------------------------------------------~~~~~~~dvih~r~----~~~~~~~~~~~ 153 (378) +.+. .+.++. +.|++-+ +......+|=+ T Consensus 169 ~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~-dAI~y~hSGL~d~~~~~i~syL 247 (516) T protein:vir:10 169 RLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPR-SAVVYASSGLMDCSDRGIIGYL 247 (516) T ss_pred eeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeech-hheeeecccceeCCCCceeeee Confidence 2111 111222 3333321 11222334545 Q ss_pred HHHHHHHHH------HH----hcCCc-ceeeeeC-CcCCHHHHHHHHHHHHHHHHHhh-----cc--ccccce------- Q lcl|Aclame:pro 154 DNALASIQT------KL----EQGKL-RGLLKIN-AFLDIDNTQEYREKALTTIKNMQ-----EG--SSYNGL------- 207 (378) Q Consensus 154 ~~~~~~i~~------~~----~~~~~-~gil~~~-~~l~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~------- 207 (378) ..|.+.++. ++ -.-.| +-|+-.+ +.|+...+.+....+..+++... +| .+.-+. T Consensus 248 hkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDy 327 (516) T protein:vir:10 248 HNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDY 327 (516) T ss_pred hhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhh Confidence 555443322 11 11122 2233222 33444333333333333333211 11 000011 Q ss_pred -eEe---cCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHhc---------ccchHHHHH--HHHHHHHHH---- Q lcl|Aclame:pro 208 -TPV---DNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILL---------GTASQEQQI--YFYNSTIIP---- 268 (378) Q Consensus 208 -~~l---~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~---------~~~~e~~~~--~f~~~~l~P---- 268 (378) ++- +.|.+++.|.-...--+++..++.++.+.++++||.+.|. |..+|-.+. .|.+. |.- T Consensus 328 WLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KF-I~rLR~r 406 (516) T protein:vir:10 328 WLMRRDGKSVTEVSSLPGAQTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKF-VVQLQHD 406 (516) T ss_pred cccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHH-HHHHHHH Confidence 111 2345555554322222467778889999999999998773 333443332 22221 322 Q ss_pred HHHHHHHHHHhhc-----CChhHHhhhccccceeeEEecchhhhhcC------HHHHHHHHHHHH--hCCCCCHHHHHH- Q lcl|Aclame:pro 269 LLIQLEKELTYKL-----ISTNRRRVVKGNLYYERIIVDNQLFKFAT------LKELIDLYHENI--NGPIFTQNQLLV- 334 (378) Q Consensus 269 ~~~~ie~~l~~~L-----l~~~~~~~g~~~~~~~~~~~d~~~l~~~d------~~~~~~~~~~~~--~~G~~t~NE~R~- 334 (378) +...+.+.|...| +++.|+..- .-.++++|..+.-. .. +..|+.++..+- -+.+++.+=+|+ T Consensus 407 Fs~lf~~~L~~qLilKgiit~eew~~i---~~~I~~~f~~Dn~f-~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ 482 (516) T protein:vir:10 407 FEEIFLDPLKTNLIYKRIITEDEWDEQ---INNIKVNFHQDSYY-TELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKN 482 (516) T ss_pred HHHHHHHHHHHhhhhccCCCHHHHHHH---hhcceEEeeecchH-HHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHH Confidence 3333344444443 566777652 23455555433211 11 123444433332 234566666654 Q ss_pred HhCCCCCCCCCeeeecccceecccchhccCccCCCCCC--CCCCC-C Q lcl|Aclame:pro 335 KMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTST--DETNN-Q 378 (378) Q Consensus 335 ~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~--~e~~~-e 378 (378) .|.++--+ +. ..++.-+++.+++ .+.++ + T Consensus 483 ILr~tDee-----------i~----~e~k~I~~E~~~~~~~~p~~~~ 514 (516) T protein:vir:10 483 ILQMTEEQ-----------IA----QEEKQIEQEAGIKRFQNPENED 514 (516) T ss_pred HhcCCHhh-----------HH----HHHHHHHHhhhCCCCCCCCccc Confidence 34443210 00 0000000111111 11111 1 No 217 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=30.10 E-value=1.6 Score=19.46 Aligned_cols=349 Identities=11% Similarity=0.026 Sum_probs=126.6 Q ss_pred CCcccccccc-------ccccccCCccce----eeccc-chhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccc Q lcl|Aclame:pro 1 MNLFGKVVSF-------SRGKLNNDTQRV----TAWQN-EAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTL 68 (378) Q Consensus 1 M~~f~~~~~~-------~~~~~~~~~~~~----~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~ 68 (378) +.+..+.... ..-++.+.-.-. ..... .......+...-+|+..++-+-.-|+.+- . .+ T Consensus 21 ~~~i~~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~~~~~~ki~~n~~~~iv~~~~~~l~g~~~~~~-~--~d------ 91 (489) T protein:vir:99 21 KNYISRFKAEQLERLKELKRYYLGDNNIKYRPAKTDKYAADNRIASDFAKYITVFEQGYMLGVPVEYK-N--EN------ 91 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccCCcceeecchHHHHHHHHhhhhccCCceee-c--CC------ Confidence 1221111100 000111110000 00000 00012234456677777777766676531 1 10 Q ss_pred eeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEE---eCCCceEEE----------Eeec--------- Q lcl|Aclame:pro 69 ISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVF---DDNTGELLD----------LLFA--------- 126 (378) Q Consensus 69 ~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~---~~~~g~~~~----------~~~~--------- 126 (378) ...+..|.++++. | ....+...+...++.+|.+|.++.. .+..|++.- +|-+ T Consensus 92 -~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~~~v~dd~~~~~~~~~ 165 (489) T protein:vir:99 92 -KDLQAAIDLMSVR--N---NEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQTFVIYDDTYQRNSLMA 165 (489) T ss_pred -hhHHHHHHHHHhh--c---ChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccceEEEEcCCCCCceEEE Confidence 1123345555542 3 2334567788889999999876532 123333311 1100 Q ss_pred ----------CCeE----EEeeeEE----------------------------EEEccccCCccccchHHHHHHHHHHH- Q lcl|Aclame:pro 127 ----------DDKK----EYKPEEL----------------------------VRLTSPFYINEDTSILDNALASIQTK- 163 (378) Q Consensus 127 ----------~~~~----~~~~~dv----------------------------ih~r~~~~~~~~~~~~~~~~~~i~~~- 163 (378) +..+ .|.++.+ +|+++...+...+.++..+.++++.. T Consensus 166 i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~s~~~~v~~liDa~d~~~ 245 (489) T protein:vir:99 166 VHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYANNEERTGAYESVLDNIDAYDLSQ 245 (489) T ss_pred EEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeecCCCCCCchhhhHHHHHHHHHHH Confidence 0000 1122223 33332111111112222233333221 Q ss_pred ---Hhc----CCcceeeeeCCcCCHHHHHHHHHHHHHHHHH---hhccccccceeEecCCc-------eeeecccchhhh Q lcl|Aclame:pro 164 ---LEQ----GKLRGLLKINAFLDIDNTQEYREKALTTIKN---MQEGSSYNGLTPVDNKT-------EIVELKKDYSVL 226 (378) Q Consensus 164 ---~~~----~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~g~-------~~~~l~~~~~~~ 226 (378) .+. +.+--++. ...+..+...+..+.+...... .......++++.++.+. +.+.|......- T Consensus 246 s~~~~~~~~~~~~~l~i~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (489) T protein:vir:99 246 SELANFQQDSVNALLVIA-GNAYTGADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKKEYDTA 324 (489) T ss_pred HHHHHHHHHhhhhhhhhc-cCCcccccchhhhhhcccccccccccccccccceeeeeccccCccccccceeeeeecCChH Confidence 111 11111111 1111111111111111111000 00111223344444332 222222211111 Q ss_pred h-HHHHHHHHHHHHHHhCCCHHHh---cccchHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHh Q lcl|Aclame:pro 227 N-KDEIDLIKSELLTGYFMNENIL---LGTASQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRR 288 (378) Q Consensus 227 ~-~~~~~~~~~~Ia~~fgVPp~~l---~~~~~e~~--------------~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~ 288 (378) . ...++.+.+.|+..-++|..-. .|+.+... ....+...|.-+++.|...++..-.... T Consensus 325 ~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~--- 401 (489) T protein:vir:99 325 GSEAYKNRLVADILRFTFTPDTQDMKFSGVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEAT--- 401 (489) T ss_pred HHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--- Confidence 1 2345677888998888885322 23322211 1234555666666666555542211000 Q ss_pred hhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCeeeecccceecccchhccCc-cC Q lcl|Aclame:pro 289 VVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGS-RK 367 (378) Q Consensus 289 ~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~-~~ 367 (378) .......+.+.| ..-.-.|..+.++++.++. |+++.-.+.++++.=.-+..+ .-+..+..-.+.... .. T Consensus 402 -~~~~~~~i~v~f--~~~~p~d~~~~~~~~~kl~--giis~et~~~~l~~v~~~d~~-----~E~~ri~~E~~~~~~~~~ 471 (489) T protein:vir:99 402 -TYSLVNDTSIVF--TPNLPQNDNEIVTAAQNLY--GIVSDQTIFEILNTVTGVDAE-----AELKRLKEEADKKQSLPE 471 (489) T ss_pred -cccccccceEEe--CCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhcCCCCchhHH-----HHHHHHHHHHHHHhcccc Confidence 000011244555 3445678888999988874 899998888876331101100 011111110000000 01 Q ss_pred CCCCC------CCCCCC Q lcl|Aclame:pro 368 DVTST------DETNNQ 378 (378) Q Consensus 368 ~~~~~------~e~~~e 378 (378) ....+ ++..++ T Consensus 472 ~~~~~~~~~~~~~~~~~ 488 (489) T protein:vir:99 472 PRLVGDASGQEEPTAEK 488 (489) T ss_pred ccccCCCCCCcCCCCCC Confidence 01111 111111 No 218 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=27.51 E-value=1.8 Score=19.14 Aligned_cols=353 Identities=10% Similarity=0.093 Sum_probs=132.2 Q ss_pred CCcccccccccc-------------------------ccccCC------ccceeecccchhhhhhHHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MNLFGKVVSFSR-------------------------GKLNND------TQRVTAWQNEAVEYTSAFVTNIHNKIANEIT 49 (378) Q Consensus 1 M~~f~~~~~~~~-------------------------~~~~~~------~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia 49 (378) =.+-.+..++.. .+.... ..-+..+ ..-+..|.|.+||+-|.+.+. T Consensus 22 ~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~Y---R~ma~~pEvd~Av~eIvneai 98 (521) T protein:vir:10 22 SDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQY---RSLSKYHEVDNAIDEIINDAI 98 (521) T ss_pred hhhccCccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHH---HHHhhccchhhHHHhhhcceE Confidence 111111111110 000000 0000001 112356779999999999874 Q ss_pred cC-----ceEEEEecccccccccceeccCchHHHHHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCC--ceEEE Q lcl|Aclame:pro 50 KV-----EFNHVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNT--GELLD 122 (378) Q Consensus 50 ~~-----p~~~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~--g~~~~ 122 (378) -. |..+--. +....++........+.++|+. ++...--+.++..|.+.|..|..++.+... .-+.+ T Consensus 99 v~d~~~~pV~i~Ld--~~~~s~~iK~kI~eeF~~Il~l-----l~F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~GI~E 171 (521) T protein:vir:10 99 VQEDNRDTVYLDLD--KTDWNESVKEMVREEFRTILKL-----LKFEREGKRHFRRWYVDSRIYFHKMIDPARPKDGIKE 171 (521) T ss_pred EecCCCceEEEEec--CcccchHHHHHHHHHHHHHHHH-----hccchhhhHHHhhheeeeeEEEEEEeeCCCcccccee Confidence 33 2222111 1111111112223334444442 222222344567889999988876653211 11222 Q ss_pred EeecC---------------------------------------------CeEEEeeeEEEEEcc---ccCCccccchHH Q lcl|Aclame:pro 123 LLFAD---------------------------------------------DKKEYKPEELVRLTS---PFYINEDTSILD 154 (378) Q Consensus 123 ~~~~~---------------------------------------------~~~~~~~~dvih~r~---~~~~~~~~~~~~ 154 (378) +.+.+ ..+.++.+-|.|.-. +.....++|=+. T Consensus 172 lr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~vkI~~daI~y~hSGL~d~~~~~i~syLh 251 (521) T protein:vir:10 172 LRLLDPRNVEYYRVNLKSNENGNDVYKGVKEFFTYGATEDNRYNISGNSNNLVQIPIDAIVYSHSGKVDIDGKTIVGYLH 251 (521) T ss_pred eeeeCCcceeeeeeecCCCCCcchhhccceeeeeeccCCCceecCCCCCCcceeechhheeeecccceeCCCCceeccch Confidence 21110 112344433333321 122233455555 Q ss_pred HHHHHHHH------HH----hcCCc-ceeeeeC-CcCCHHHHHHHHHHHHHHHHHhh-----cc--ccccce-------- Q lcl|Aclame:pro 155 NALASIQT------KL----EQGKL-RGLLKIN-AFLDIDNTQEYREKALTTIKNMQ-----EG--SSYNGL-------- 207 (378) Q Consensus 155 ~~~~~i~~------~~----~~~~~-~gil~~~-~~l~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~-------- 207 (378) .|.+.++. ++ -.-.| +-|+-.+ +.|+...+.+....+..+++... +| .+.-+. T Consensus 252 kAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~msMlEDyW 331 (521) T protein:vir:10 252 NVIKPANQLKMLEDAMVIYRITRAPERRVFYIDVGTMPNKKATQHLNNVMQGLKNRVVYDSSTGKVKNSSNNLAMTEDYW 331 (521) T ss_pred hhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchhhhhhHhhhc Confidence 55544332 11 11122 2233222 33444333333333333333211 11 000011 Q ss_pred eEe---cCCceeeecccchhhhhHHHHHHHHHHHHHHhCCCHHHhccc--------chHHHH-----HHHHHHHHHHHHH Q lcl|Aclame:pro 208 TPV---DNKTEIVELKKDYSVLNKDEIDLIKSELLTGYFMNENILLGT--------ASQEQQ-----IYFYNSTIIPLLI 271 (378) Q Consensus 208 ~~l---~~g~~~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVPp~~l~~~--------~~e~~~-----~~f~~~~l~P~~~ 271 (378) ++- +.|.+++.|.-...--+++..++.++.+.++++||.+.|... .+|-.+ .-|+..-=.-+.. T Consensus 332 LpRReGgrgTEI~TLpggqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItRDEikF~KFI~rLR~rFs~ 411 (521) T protein:vir:10 332 LMRRDGKATTEVSTLPGAQSMGEMDDVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITRDELQFTKYIRGLQQQFEP 411 (521) T ss_pred ccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCccccCCCCCceecccccchhHHHHHHHHHHHHHHHHHHH Confidence 111 234555555432222246777888999999999999887421 233222 1232221122333 Q ss_pred HHHHHHHhhc-----CChhHHhhhccccceeeEEecchhhhhcC------HHHHHHHHHHH----HhCCCCCHHHHHH-H Q lcl|Aclame:pro 272 QLEKELTYKL-----ISTNRRRVVKGNLYYERIIVDNQLFKFAT------LKELIDLYHEN----INGPIFTQNQLLV-K 335 (378) Q Consensus 272 ~ie~~l~~~L-----l~~~~~~~g~~~~~~~~~~~d~~~l~~~d------~~~~~~~~~~~----~~~G~~t~NE~R~-~ 335 (378) .+.+.|...| +++.|+..- .-.++++|..+.-. .. +..|+.++..+ +-+-+++.+=+|+ . T Consensus 412 ~f~~~L~~qLilKgiit~eew~~i---~~~I~~~f~~Dn~f-~ElKe~eil~~R~~~l~~~dp~~yvGky~s~dyi~k~I 487 (521) T protein:vir:10 412 IFLNPLRTNLMLKGKMSVSEWEEQ---AENIKVVFSKDSYY-EEIKDVEILERRVNLVQTLASAEVTGKYLSHEYVMKNI 487 (521) T ss_pred HHHHHHHHhhhhccCCCHHHHHHH---hhcceEEeeecchH-HHHHHHHHHHHHHHHHHhhcCccccccccchHHHHHHH Confidence 3344444443 566777642 23455555433211 11 12344444433 2222455555543 2 Q ss_pred hCCCCCCCCCeeeecccceecccchhccCccCC-CCCCCCCCCC Q lcl|Aclame:pro 336 MGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKD-VTSTDETNNQ 378 (378) Q Consensus 336 ~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~-~~~~~e~~~e 378 (378) |.++-.+ ..+.+..-+.+. +++ -+..+++-++ T Consensus 488 Lr~tDee----------ik~~~k~I~~E~-~~~~~~~p~~e~~d 520 (521) T protein:vir:10 488 LRMSDED----------IKTEREKIDGEL-KDSVYKNPEDPMEE 520 (521) T ss_pred hcCCHhH----------HHHHHHHHHHhh-hCCCCCCCcchhhc Confidence 3333110 000000000000 000 0011111111 No 219 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=20.36 E-value=2.8 Score=18.14 Aligned_cols=334 Identities=10% Similarity=0.053 Sum_probs=127.1 Q ss_pred CCccccccccccccccCCcccee--ecccchhhhhhHHHHHHHHHHHhhhccCceEEEEecccccccccceeccCchHHH Q lcl|Aclame:pro 1 MNLFGKVVSFSRGKLNNDTQRVT--AWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) Q Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) -.++.+.... ....+.... .-.+. ........-.|+..+.-+-+-|+.+ ..... .+..+.+ T Consensus 44 h~Il~r~~~~----~~~~~~~~~d~~~~nn--ki~~nf~k~Ivd~~~~yl~G~Pv~~-~~~d~----------~~~e~~~ 106 (537) T protein:vir:78 44 NDIEKSRIFY----MNDKGQLREDNYASNV--KISHGFFTELVDQLAQYLLSNGVEV-KVKDE----------DNTQLDE 106 (537) T ss_pred chhhhccccc----cccccccccccccccc--ccccchHHHHHHHHhhhhcccCcee-ecCcc----------hhHHHHH Confidence 0111100000 000000000 00000 1122233445677777777778764 21110 1122344 Q ss_pred HHhccCCCCCCHHHHHHHHHHHHHhcCCcEEEEEEeCCCceEEEEe-------e--c-C--------------------- Q lcl|Aclame:pro 79 VLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL-------F--A-D--------------------- 127 (378) Q Consensus 79 lL~~~PN~~~s~~~f~~~~~~~~ll~Gna~~~~~~~~~~g~~~~~~-------~--~-~--------------------- 127 (378) .|+.- +. .........+...+..+|.||.++ +.+..|.+.... | + . T Consensus 107 ~l~~~-~~-~~~~~~~~el~~~~s~~G~ay~~~-y~de~~~~~~~~i~p~~~~pv~d~~~~~~~~~~~y~~~~~~~~~~~ 183 (537) T protein:vir:78 107 ILQEY-FD-EDFQATIDTLVTNASKKGFEGIFA-RTTSEGKLKFQTVDGLTLIPVFDDYGVLKMIIRWYSEIRYSTKQQS 183 (537) T ss_pred HHHHH-hh-ccHHHHHHHHHHHHhhcCeeEEEe-eecCCCceEEEEEccceeEEEEcCCCCceeEEEEEeeeeccccccC Confidence 44321 11 122334556778889999998765 344444432110 0 0 0 Q ss_pred -Ce----EEEeeeEEEEEccc---------------------------------------------cC---------Ccc Q lcl|Aclame:pro 128 -DK----KEYKPEELVRLTSP---------------------------------------------FY---------INE 148 (378) Q Consensus 128 -~~----~~~~~~dvih~r~~---------------------------------------------~~---------~~~ 148 (378) .. ..|.++.|.+++.. ++ ... T Consensus 184 ~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~f~nn~~ 263 (537) T protein:vir:78 184 TETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADFEDTDGYQVLGRSYSKFPFQLLYNNKD 263 (537) T ss_pred cceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeeccccccccccccccccccccCCcceeEEEeccCcc Confidence 00 01233333333210 00 001 Q ss_pred ccchH---HHHHHHHHHHH----hcC--CcceeeeeCC-cCCHHHHHHHHHHHHHHHHHhhccccccceeEec-CC--ce Q lcl|Aclame:pro 149 DTSIL---DNALASIQTKL----EQG--KLRGLLKINA-FLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVD-NK--TE 215 (378) Q Consensus 149 ~~~~~---~~~~~~i~~~~----~~~--~~~gil~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g--~~ 215 (378) +.|.+ ..+.++++..+ +.- ....++...+ .+.+ ..+ +...++. .+++.++ .+ ++ T Consensus 264 ~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~g~~~~~--~~~----~~~~l~~-------~~~i~v~~d~~~v~ 330 (537) T protein:vir:78 264 GMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVKGFSGDS--TDK----LRQNIKA-------KKMIGVNGDNAGME 330 (537) T ss_pred CCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeeecCCCcc--chh----HHHHHhh-------cCceeecCCCCcee Confidence 22222 22333333221 110 1123333332 2211 111 2222221 1233332 33 44 Q ss_pred eeecccchhhhhHHHHHHHHHHHHHHhCCC---HHHhcccchHH--------------HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 216 IVELKKDYSVLNKDEIDLIKSELLTGYFMN---ENILLGTASQE--------------QQIYFYNSTIIPLLIQLEKELT 278 (378) Q Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~Ia~~fgVP---p~~l~~~~~e~--------------~~~~f~~~~l~P~~~~ie~~l~ 278 (378) |..-..+.... ...++.+.+.|...-.+| ... .|+.+.. ....++...|.-.++.|...++ T Consensus 331 ~l~~~~~~~~~-e~~ld~L~~~I~~~s~~~~~~~~~-~gn~SGvAlk~~~~~l~~ka~~ke~~f~~~l~~~~~~i~~~~~ 408 (537) T protein:vir:78 331 IQTVSIPYEAR-KAKMDIDVENIYRSGMGFNSTAVG-DGNVTNVVIKSRYTLLAMKARKMETSLRKVLRWCADMVVSDIA 408 (537) T ss_pred EEEecCCHHHH-HHHHHHHHHHHHHhcCCCCCcccc-ccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 44333332221 233456666776554443 222 2222221 1223556667777777766665 Q ss_pred hhcCChhHHhhhccccceeeEEecchhhhhcCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCC---------------- Q lcl|Aclame:pro 279 YKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIE---------------- 342 (378) Q Consensus 279 ~~Ll~~~~~~~g~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~---------------- 342 (378) .+-. +......+++.|. .-+-.|.++.++.+.+++..|+++..-+.+.+++-.-+ T Consensus 409 ~~~~-------~~~d~~~i~i~f~--~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~p~vdd~e~ek~~~ee~~~~~~~ 479 (537) T protein:vir:78 409 LRGL-------GEYDSNDICFEIE--PHVLANELDIATTRKTEAETEALKIGNIMTVAPRIGDDETLKLIAEELDLDYNE 479 (537) T ss_pred hcCC-------cccccceeeEEec--cCCCCCHHHHHHHHHHHHhcCcchHHHHHHhCCCCCCHHHHHHHHHHHHhhhhh Confidence 4321 1112234555554 44668889999999999999999988888776442211 Q ss_pred --C--CCeeeecccceeccc-chhccCccCCCCCCCCCCCC Q lcl|Aclame:pro 343 --G--GDVYIANLNAVAVKN-LSDLQGSRKDVTSTDETNNQ 378 (378) Q Consensus 343 --g--GD~~~~~~n~~~~~~-~~~~~~~~~~~~~~~e~~~e 378 (378) . .+.-.......|-.. ..+..+...+.+++++++-+ T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 520 (537) T protein:vir:78 480 LKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPNQPV 520 (537) T ss_pred hhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCccCCC Confidence 0 000000011111100 00000111111111111111 Done!