BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:94893|NCBI_annot:putative terminase large subunit|genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 (540 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 1110 0.0 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 1102 0.0 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 1100 0.0 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 1094 0.0 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 1083 0.0 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 119 1e-28 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 118 2e-28 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 118 2e-28 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 117 5e-28 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 117 5e-28 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 112 1e-26 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 109 8e-26 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 108 1e-25 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 97 4e-22 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 96 9e-22 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 96 2e-21 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 95 2e-21 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 95 2e-21 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 95 2e-21 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 95 2e-21 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 95 2e-21 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 94 3e-21 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 94 4e-21 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 94 5e-21 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 93 8e-21 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 90 7e-20 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 78 3e-16 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 78 3e-16 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 78 3e-16 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 77 4e-16 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 77 4e-16 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 77 4e-16 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 71 3e-14 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 70 7e-14 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 69 1e-13 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 68 3e-13 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 67 4e-13 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 66 1e-12 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 61 3e-11 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 58 3e-10 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 57 5e-10 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 57 6e-10 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 54 5e-09 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 54 7e-09 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 53 1e-08 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 50 5e-08 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 49 1e-07 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 49 1e-07 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 44 4e-06 gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: put... 44 5e-06 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 44 5e-06 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 44 6e-06 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 43 9e-06 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 42 2e-05 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 42 2e-05 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 42 2e-05 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 40 5e-05 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 39 1e-04 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 39 2e-04 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 39 2e-04 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 38 2e-04 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 35 0.002 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 35 0.002 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 34 0.005 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 32 0.021 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 31 0.030 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 30 0.051 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 29 0.14 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 28 0.22 gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 28 0.25 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 27 0.47 gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: g... 27 0.54 gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: te... 26 1.2 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 26 1.2 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 25 2.5 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 25 3.4 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 24 4.9 gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp3... 24 5.1 gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: put... 23 6.1 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 1110 bits (2872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/540 (100%), Positives = 540/540 (100%) Query: 1 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGN 60 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGN Sbjct: 1 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGN 60 Query: 61 LMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL 120 LMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL Sbjct: 61 LMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL 120 Query: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF Sbjct: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL Sbjct: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 Query: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL 300 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL Sbjct: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL 300 Query: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT 360 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT Sbjct: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT 360 Query: 361 AVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 AVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP Sbjct: 361 AVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 421 YINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 YINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS Sbjct: 421 YINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 Query: 481 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV Sbjct: 481 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 1102 bits (2849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/540 (98%), Positives = 538/540 (99%) Query: 1 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGN 60 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWI+DNFYLTTGN Sbjct: 1 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIEDNFYLTTGN 60 Query: 61 LMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL 120 LMKIELLPTQRWWYELMLGYDM+DEKG+QVNL+NEIFLNLGRGSGKSSLMATRVLNWMIL Sbjct: 61 LMKIELLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMIL 120 Query: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF Sbjct: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL Sbjct: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 Query: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL 300 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIG VPKWSGVIEEYEL Sbjct: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGSVPKWSGVIEEYEL 300 Query: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT 360 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT Sbjct: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT 360 Query: 361 AVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 AVSFVCELEGKTYS+TLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP Sbjct: 361 AVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 421 YINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 YINDFR+KTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS Sbjct: 421 YINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 Query: 481 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 KL ENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV Sbjct: 481 KLAENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 1100 bits (2844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 531/540 (98%), Positives = 538/540 (99%) Query: 1 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGN 60 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWI+DNFYLTTGN Sbjct: 1 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIEDNFYLTTGN 60 Query: 61 LMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL 120 LMKIELLPTQRWWYELMLGYDM+DEKG+QVNL+NEIFLNLGRGSGKSSLMATRVLNWMIL Sbjct: 61 LMKIELLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMIL 120 Query: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEF SFKTTF Sbjct: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFASFKTTF 180 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL Sbjct: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 Query: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL 300 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIG VPKWSGVIEEYEL Sbjct: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGSVPKWSGVIEEYEL 300 Query: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT 360 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT Sbjct: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT 360 Query: 361 AVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 AVSFVCELEGKTYS+TLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP Sbjct: 361 AVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 421 YINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 +INDFR+KTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS Sbjct: 421 HINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 Query: 481 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV Sbjct: 481 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 530/540 (98%), Positives = 537/540 (99%) Query: 1 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGN 60 MYYLNKML+YNK+NGIIINKYIRKTIQKQIRIH KYIYRYDRVTQAIEWI+DNFYLTTGN Sbjct: 1 MYYLNKMLDYNKDNGIIINKYIRKTIQKQIRIHGKYIYRYDRVTQAIEWIEDNFYLTTGN 60 Query: 61 LMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL 120 LMKI+L P Q+WWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL Sbjct: 61 LMKIKLHPVQKWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL 120 Query: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF Sbjct: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL Sbjct: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 Query: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL 300 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL Sbjct: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL 300 Query: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT 360 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT Sbjct: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT 360 Query: 361 AVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 AVSFVCELEGKTYS+TLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP Sbjct: 361 AVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 421 YINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 YINDFR+KTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS Sbjct: 421 YINDFRTKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 Query: 481 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV Sbjct: 481 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/540 (96%), Positives = 536/540 (99%) Query: 1 MYYLNKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGN 60 MYY+N+ML YNKE+GI +NKY+RKTIQKQIRIH KYIYRYDRVTQAIEWI+DNFYLTTGN Sbjct: 1 MYYMNQMLAYNKEHGIELNKYMRKTIQKQIRIHKKYIYRYDRVTQAIEWIEDNFYLTTGN 60 Query: 61 LMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL 120 LMKI+L PTQ++WYELMLGYDMVDEKG+QVNL+NEIFLNLGRGSGKSSLMATRVLNWMIL Sbjct: 61 LMKIKLHPTQKYWYELMLGYDMVDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMIL 120 Query: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFT+FKTTF Sbjct: 121 GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTAFKTTF 180 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL Sbjct: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 Query: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL 300 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL Sbjct: 241 YDKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL 300 Query: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLT 360 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLT+FNLSVFNKNRTYVGIDLSLIGDLT Sbjct: 301 AQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTEFNLSVFNKNRTYVGIDLSLIGDLT 360 Query: 361 AVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 AVSFVCELEGKTYS+TLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP Sbjct: 361 AVSFVCELEGKTYSHTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 Query: 421 YINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 YINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS Sbjct: 421 YINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKS 480 Query: 481 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV Sbjct: 481 KLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVSDEV 540 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 119 bits (298), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 131/524 (25%), Positives = 253/524 (48%), Gaps = 28/524 (5%) Query: 16 IIINKYIRKTIQKQIR-IHN--KYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRW 72 I +KY++K ++ +R + N K+++ + + I +I+ + G+ ++ L P Q + Sbjct: 27 IKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHF 86 Query: 73 WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL-GGQYGGESLVI 131 + G+ K ++ E + +GR +GK++ ++ V N+ + G+ G E ++ Sbjct: 87 IIGSLFGWV---HKETKLRRFKEALIFMGRKNGKTTTISG-VANYAVSQDGENGAEIHLL 142 Query: 132 AYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQ 191 A QAR +FD+ + +AS LR EN F+ + + + + + Q +D+ + Sbjct: 143 ANVMKQARILFDESKAMIKASPKLR---EN--FRPLRDEIHYDATISKIMPQASDSDKLD 197 Query: 192 GGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVE--RFK 249 G N+ + IFDE+H + + SV K SR + IYIT+ G + DG +VE R Sbjct: 198 GLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDT 257 Query: 250 SEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQN 309 ++ ++R+F L L++ + + D NW A P +G + EE+E A+ PA + Sbjct: 258 LDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPAERG 317 Query: 310 KFLA--FNMGLPMQDTAYYFTPQDTKLTD-FNLSVFNKNRTYVGIDLSLIGDLTAVSFVC 366 F+ FN+ + ++ P K + +L +G DLS D TA Sbjct: 318 DFITKRFNIFANNDEMSFIDYPTLQKNNEIISLDELEGRPCTIGYDLSETEDFTAACATF 377 Query: 367 ELE-GKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDF 425 L+ GK T ++ + + E + ++ + E+ + G L + D YI+ D++ +I Sbjct: 378 ALDNGKVAVLTHSWIPKHKVEY--SNEKIPYREWEEDGLLTIQDKPYIDYQDVLNWI--I 433 Query: 426 RSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVEN 485 + + KI YD A L ++ Y F+ + Q A+ +++ +K LK ++ Sbjct: 434 KMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGAL----TLSPALKDLKEMFLDG 489 Query: 486 KLI-HNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 K+I +N +M+W +NN +K+ ++G+++ +K+ KID A Sbjct: 490 KIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAF 533 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 118 bits (296), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 129/524 (24%), Positives = 253/524 (48%), Gaps = 28/524 (5%) Query: 16 IIINKYIRKTIQKQIR-IHN--KYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRW 72 I +KY+RK ++ +R + N K+++ + + I +I+ + G+ ++ L P Q + Sbjct: 27 IKTSKYVRKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHF 86 Query: 73 WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL-GGQYGGESLVI 131 + G+ K ++ E + +GR +GK++ ++ V N+ + G+ G E ++ Sbjct: 87 IIGSLFGWV---HKETKLRRFKEALIFMGRKNGKTTTISG-VANYAVSQDGENGAEIHLL 142 Query: 132 AYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQ 191 A QAR +FD+ + +AS L +K F++ + + + + + Q +D+ + Sbjct: 143 ANVMKQARILFDESKAMIKASPKL-----DKNFRTLRDEIHYDATISKIMPQASDSDKLD 197 Query: 192 GGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVE--RFK 249 G N+ + IFDE+H + + SV K SR + IYIT+ G + DG +VE R Sbjct: 198 GLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDT 257 Query: 250 SEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQN 309 ++ ++R+F L L++ + + D NW A P +G + EE+E A+ PA + Sbjct: 258 LDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERG 317 Query: 310 KFLA--FNMGLPMQDTAYYFTPQDTKLTDF-NLSVFNKNRTYVGIDLSLIGDLTAVSFVC 366 F+ FN+ + ++ P K + +L +G DLS D TA Sbjct: 318 DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATF 377 Query: 367 ELE-GKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDF 425 L+ GK + ++ + + E + ++ + E+ + G L + D YI+ D++ +I Sbjct: 378 ALDNGKVAVLSHSWIPKHKVEY--SNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWI--I 433 Query: 426 RSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVEN 485 + + KI YD A L ++ Y F+ + Q A+ +++ +K LK ++ Sbjct: 434 KMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGAL----TLSPALKDLKEMFLDG 489 Query: 486 KLI-HNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 K+I +N +M+W +NN +K+ ++G+++ +K+ KID A Sbjct: 490 KIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAF 533 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 118 bits (295), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 131/524 (25%), Positives = 251/524 (47%), Gaps = 28/524 (5%) Query: 16 IIINKYIRKTIQKQIR-IHN--KYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRW 72 I +KY++K ++ +R + N K+++ + + I +I+ + G+ ++ L P Q + Sbjct: 27 IKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHF 86 Query: 73 WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL-GGQYGGESLVI 131 + G+ K ++ E + +GR +GK++ ++ V N+ + G+ G E ++ Sbjct: 87 IIGSLFGWV---HKETKLRRFKEALIFMGRKNGKTTTISG-VANYAVSQDGENGAEIHLL 142 Query: 132 AYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQ 191 A QAR +FD+ + +AS LR EN F+ + + + + + Q +D+ + Sbjct: 143 ANVMKQARILFDESKAMIKASPKLR---EN--FRPLRDEIHYDATISKIMPQASDSDKLD 197 Query: 192 GGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVE--RFK 249 G N+ + IFDE+H + + SV K SR + IYIT+ G + DG +VE R Sbjct: 198 GLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVNMVEAGRDT 257 Query: 250 SEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQN 309 + ++R+F L L++ + + D NW A P +G + EE+E A+ P + Sbjct: 258 LDRIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSIDLDEMKEEWEKAKRTPDERG 317 Query: 310 KFLA--FNMGLPMQDTAYYFTPQDTKLTD-FNLSVFNKNRTYVGIDLSLIGDLTAVSFVC 366 F+ FN+ + ++ P K D +L +G DLS D TA Sbjct: 318 DFITKRFNIFANNDEMSFIDYPTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATF 377 Query: 367 ELE-GKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDF 425 L+ GK T ++ + + E + ++ + E+ + G L + D YI+ D++ +I Sbjct: 378 ALDNGKVAVLTHSWIPKHKVEY--SNEKIPYIEWEEDGLLTIQDNPYIDYQDVLNWI--I 433 Query: 426 RSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVEN 485 + + KI YD A L ++ Y F+ + Q A+ +++ +K LK ++ Sbjct: 434 KMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGAL----TLSPALKDLKEMFLDG 489 Query: 486 KLI-HNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 K+I +N +M+W +NN +K+ ++G+++ +K+ KID A Sbjct: 490 KIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAF 533 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 117 bits (292), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 128/524 (24%), Positives = 253/524 (48%), Gaps = 28/524 (5%) Query: 16 IIINKYIRKTIQKQIR-IHN--KYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRW 72 I +KY++K ++ +R + N K+++ + + I +I+ + G+ ++ L P Q + Sbjct: 27 IKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHF 86 Query: 73 WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL-GGQYGGESLVI 131 + G+ K ++ E + +GR +GK++ ++ V N+ + G+ G E ++ Sbjct: 87 IIGSLFGWV---HKETKLRRFKEALIFMGRKNGKTTTISG-VANYAVSQDGENGAEIHLL 142 Query: 132 AYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQ 191 A QAR +FD+ + +AS L +K F++ + + + + + Q +D+ + Sbjct: 143 ANVMKQARILFDESKAMIKASPKL-----DKNFRTLRDEIHYDATISKIMPQASDSDKLD 197 Query: 192 GGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVE--RFK 249 G N+ + IFDE+H + + SV K SR + IYIT+ G + DG +VE R Sbjct: 198 GLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDT 257 Query: 250 SEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQN 309 ++ ++R+F L L++ + + D NW A P +G + EE+E A+ PA + Sbjct: 258 LDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERG 317 Query: 310 KFLA--FNMGLPMQDTAYYFTPQDTKLTDF-NLSVFNKNRTYVGIDLSLIGDLTAVSFVC 366 F+ FN+ + ++ P K + +L +G DLS D TA Sbjct: 318 DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATF 377 Query: 367 ELE-GKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDF 425 L+ GK + ++ + + E + ++ + E+ + G L + D YI+ D++ +I Sbjct: 378 ALDNGKVAVLSHSWIPKHKVEY--SNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWI--I 433 Query: 426 RSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVEN 485 + + KI YD A L ++ Y F+ + Q A+ +++ +K LK ++ Sbjct: 434 KMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGAL----TLSPALKDLKEMFLDG 489 Query: 486 KLI-HNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 K+I +N +M+W +NN +K+ ++G+++ +K+ KID A Sbjct: 490 KIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAF 533 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 117 bits (292), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 128/524 (24%), Positives = 253/524 (48%), Gaps = 28/524 (5%) Query: 16 IIINKYIRKTIQKQIR-IHN--KYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRW 72 I +KY++K ++ +R + N K+++ + + I +I+ + G+ ++ L P Q + Sbjct: 27 IKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVLQPWQHF 86 Query: 73 WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMIL-GGQYGGESLVI 131 + G+ K ++ E + +GR +GK++ ++ V N+ + G+ G E ++ Sbjct: 87 IIGSLFGWV---HKETKLRRFKEALIFMGRKNGKTTTISG-VANYAVSQDGENGAEIHLL 142 Query: 132 AYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQ 191 A QAR +FD+ + +AS L +K F++ + + + + + Q +D+ + Sbjct: 143 ANVMKQARILFDESKAMIKASPKL-----DKNFRTLRDEIHYDATISKIMPQASDSDKLD 197 Query: 192 GGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVE--RFK 249 G N+ + IFDE+H + + SV K SR + IYIT+ G + DG +VE R Sbjct: 198 GLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGYQLDGPLVDMVEAGRDT 257 Query: 250 SEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQN 309 ++ ++R+F L L++ + + D NW A P +G + EE+E A+ PA + Sbjct: 258 LDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERG 317 Query: 310 KFLA--FNMGLPMQDTAYYFTPQDTKLTDF-NLSVFNKNRTYVGIDLSLIGDLTAVSFVC 366 F+ FN+ + ++ P K + +L +G DLS D TA Sbjct: 318 DFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATF 377 Query: 367 ELE-GKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDF 425 L+ GK + ++ + + E + ++ + E+ + G L + D YI+ D++ +I Sbjct: 378 ALDNGKVAVLSHSWIPKHKVEY--SNEKIPYREWEEDGLLTVQDKPYIDYQDVLNWI--I 433 Query: 426 RSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVEN 485 + + KI YD A L ++ Y F+ + Q A+ +++ +K LK ++ Sbjct: 434 KMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGAL----TLSPALKDLKEMFLDG 489 Query: 486 KLI-HNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 K+I +N +M+W +NN +K+ ++G+++ +K+ KID A Sbjct: 490 KIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAF 533 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 112 bits (279), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 123/461 (26%), Positives = 201/461 (43%), Gaps = 33/461 (7%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMI--LGGQYGGESLVIAYDNTQARHVFDQVRNQTEAS 152 E F+ LGRG GK+ ++T + N+ I L G + V+A QA+ F +V N + + Sbjct: 88 EFFITLGRGGGKNGFIST-LSNYFISPLHGINNYDVSVVANSEDQAKVSFKEVFNTIDGN 146 Query: 153 DTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITE 212 L F + K + + + FK QT++ GG I+DE H Y + Sbjct: 147 PKLE-----GSFDAWKAQIIGKATNSVFKFQTSNAKTKDGGREGCVIYDETHEYEDRQII 201 Query: 213 SVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS--EEEFYNDRSFGLLYMLENHE 270 V G K N + +I + G R G YDKL ER K+ E NDR F + L++ Sbjct: 202 DVFSGGLGKVANPREFFIGTNGFVRAGFYDKLEERSKAILSGENLNDRMFPFICKLDDPA 261 Query: 271 QVKDKKNWTMALPLIGDV--PK----WSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTA 324 +VK++ W A P P+ + V ++YE +P+ + F+ M LP D Sbjct: 262 EVKNEAMWEKANPAFEKPLSPRSKRLLNKVRKQYEALTNNPSGREAFMTKRMNLPEVDLE 321 Query: 325 YYFTP-QDTKLTDFNLSVFNKNRTYVG-IDLSLIGDLTAVSFVCELEGKTYSYTLTFSVR 382 P +D T+ + +NR +G D + + D AV + + G Y + R Sbjct: 322 KVVAPWEDILATNREMPEL-QNRACIGAFDYASVKDFAAVGLLFRV-GDDYIWKTHSFAR 379 Query: 383 SQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPAR 442 Y + + + E+ +G L ++D I+ ++ + + R G ++K+ D R Sbjct: 380 KGYLDIANLKPPI-KEWEKQGLLTIVDEPTIDPRHVVNWFVEMRETHG--IQKVIGDNFR 436 Query: 443 YEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLI--HNQKVMQWALNN 500 ++++ L F+ +G IR + + + L N I + +M+W NN Sbjct: 437 MDLMRPL-----FEAEGFELEIIRNPRAAHSLLAPRIETLFANHRIVFGDNPLMRWYTNN 491 Query: 501 TAVKIGQSGDYMYTKKLE-KDKIDPTVALTMALEMAVSDEV 540 AVKI G+ Y KK E + K D A AL A DE+ Sbjct: 492 VAVKIKPDGNKEYLKKDEHRRKTDGFQAFVHALWRA--DEI 530 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 109 bits (273), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 121/496 (24%), Positives = 221/496 (44%), Gaps = 47/496 (9%) Query: 69 TQRWWYEL------MLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGG 122 +++W++E+ + + + E +E F+++ RG GK+ ++T L L Sbjct: 56 SEKWFFEIQDFQKFITCFVFLYEADTLTPYFSEFFISMARGGGKNGYIST--LGAFFLTP 113 Query: 123 QYGGESL---VIAYDNTQARHVFDQVRNQTEASDT-LRVYNENKIFKSTKQGLEFTSFKT 178 +G V+A QA+ F ++ + E++D +R N F +K +E S K Sbjct: 114 LHGIPKYNMSVVANSEKQAQVSFQEIYDMIESNDLYVRKDKPNNPFNISKVLIEGISMKA 173 Query: 179 TFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRD 238 F T++ G FDE+H Y +D +V + K + ++ YI + G R+ Sbjct: 174 QFVFDTSNEKTKDGAREGCVFFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIGTDGHVRE 233 Query: 239 GLYDKLVERFKSE--EEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPK------ 290 G DKL ER + E DR F + +++ E++ D W A P+ + P Sbjct: 234 GFLDKLKERAANVLIGESPEDRLFPFICKIDDKEELHDFDMWQKANPMF-EAPMNDYGRQ 292 Query: 291 -WSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKL-TDFNLSVFNKNRTY 348 + V ++Y + +P+ + +F+ M LP D+ P D L T+ ++ + + Sbjct: 293 LFQEVKQQYLSLKFNPSGRTEFMTKRMNLPETDSQSVVAPWDDILATNRDMPSLDNHECI 352 Query: 349 VGIDLSLIGDLTAVSFVCELEGKTYSYTLTFSVRSQYE--QLDTEQQELWTEFVDRGELI 406 G+D + + D AV + +++ + T +F+ ++ + QL E W E +G L Sbjct: 353 GGLDYASLKDFAAVGLLFKVDDEYIWKTHSFARKAFLDEYQLKPPIHE-WAE---KGLLT 408 Query: 407 LLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKD-GDNQRAI 465 ++D I+ +I + + + G L+K+ D R ++L+ L E D + N RAI Sbjct: 409 IVDEPTISPKHIIDWFLEAQKHYG--LKKVIADNFRMDLLRPLFEENDIDYEVVKNTRAI 466 Query: 466 RQGFSMNDYIKLLKSKL-----VENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLE-K 519 + LL ++ +N + + +M+W N AVKI + G+ Y KK + Sbjct: 467 QS---------LLAPRVEDMFAQQNIIFGDNPLMRWYTGNVAVKIDKYGNKTYEKKEPVR 517 Query: 520 DKIDPTVALTMALEMA 535 K D AL AL A Sbjct: 518 RKTDGFQALIHALYRA 533 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 108 bits (271), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 115/437 (26%), Positives = 212/437 (48%), Gaps = 22/437 (5%) Query: 100 LGRGSGKSSLMATRVLNWMIL-GGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVY 158 +GR +GK++ ++ V N+ + G+ G E ++A QAR +FD+ + +AS LR Sbjct: 1 MGRKNGKTTTISG-VANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLR-- 57 Query: 159 NENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGS 218 EN F+ + + + + + Q +D+ + G N+ + IFDE+H + + SV K S Sbjct: 58 -EN--FRPLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNS 114 Query: 219 RQKQDNWQSIYITSGGLKRDGLYDKLVE--RFKSEEEFYNDRSFGLLYMLENHEQVKDKK 276 R + IYIT+ G + DG +VE R + ++R+F L L++ + + D Sbjct: 115 RAARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIEDERTFYYLASLDDDDDINDSS 174 Query: 277 NWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLA--FNMGLPMQDTAYYFTPQDTKL 334 NW A P +G + + EE+E A+ P + F+ FN+ + ++ P K Sbjct: 175 NWIKANPNLGVSIDLAEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSFIDYPTLQKN 234 Query: 335 TD-FNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELE-GKTYSYTLTFSVRSQYEQLDTEQ 392 D +L +G DLS D TA L+ GK T ++ + + E + + Sbjct: 235 NDIISLDELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLTHSWIPKHKVEY--SNE 292 Query: 393 QELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIER 452 + + E+ + G L + D YI+ D++ +I + + KI YD A L ++ Sbjct: 293 KIPYIEWEEDGLLTIQDNPYIDYQDVLNWI--IKMNEHYVVEKITYDRANAFKLNQELKN 350 Query: 453 YFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLI-HNQKVMQWALNNTAVKIGQSGDY 511 Y F+ + Q A+ +++ +K LK ++ K+I +N +M+W +NN +K+ ++G++ Sbjct: 351 YGFETEETRQGAL----TLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNW 406 Query: 512 MYTKKLEKDKIDPTVAL 528 + +K+ KID A Sbjct: 407 LPSKQSRYRKIDGFAAF 423 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 97.4 bits (241), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 120/521 (23%), Positives = 220/521 (42%), Gaps = 41/521 (7%) Query: 5 NKMLEYNKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLMKI 64 N +E KE +++ KY+R ++++ I +D + AI + FY Sbjct: 23 NDEVENCKEQKLLM-KYVRGRLEQK-----NVIIDHDTLDTAIATAERYFY--------- 67 Query: 65 ELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQY 124 +L P Q++ Y + +DE G + + N+ F+ GRG GK+ L++ + Sbjct: 68 KLFPFQKFIYAFVFAVFEIDEDGDKQLMFNDYFIYAGRGFGKNGLLSCMIFECTTKNHGV 127 Query: 125 GGESL-VIAYDNTQARHVFDQVRNQTEAS-DTLR-VYNENKI-FKSTKQGLEFTSFKTTF 180 ++ ++A QA+ F+ + N E + DT++ VY N + + K G +T Sbjct: 128 DHYNIDIVATSEDQAKTSFEDIYNMLEENKDTMKNVYRWNLVAIQHRKNG-------STI 180 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 K +T++ G FDE H Y + +V+ K++ + ++T+ G R + Sbjct: 181 KYKTSNARTKDGSRPGAVAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHLTTDGYVRGSV 240 Query: 241 YD--KLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDV-PKWSGVIEE 297 D K++ + E N + F + L++ ++V++K W A P+I P + + Sbjct: 241 LDDRKVLAQQVLNGEKPNSKMFPFICKLDSPDEVQNKTKWAKANPMILYYKPLRIEIDQH 300 Query: 298 YELAQGDPALQNKFLAFNMGLPMQD-TAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLI 356 ++ AQ + +F+ M P QD T D K T+ + GID + + Sbjct: 301 WDDAQSSSEIMVEFMTKRMNCPTQDPTTVAVKWDDIKATNQPMPSLKMAPAIGGIDFADV 360 Query: 357 GDLTAVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVN 416 D AV + + EGK TF + T+ + E V++G ++ YI+ + Sbjct: 361 RDFCAVGLLFKKEGKYIFKHHTFICAESLKI--TKFKFPIHEAVEKGLATIIHDNYIDED 418 Query: 417 DLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQG-FSMNDYI 475 + + R+ I D RY+ LK F G +R G +S N Sbjct: 419 YPLQWF--LEQAKEHRIINIATDSFRYKSLKEA-----FTSAGAPLIQVRSGPYSHNRLS 471 Query: 476 KLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTK 515 ++ +K+I + +M+W NN A+K G+ Y K Sbjct: 472 SMVDKLFASHKIIFGDDMLMRWYCNNVAIKFDARGEKTYIK 512 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 96.3 bits (238), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 127/557 (22%), Positives = 240/557 (43%), Gaps = 53/557 (9%) Query: 3 YLNKMLEYNKENGIIINKY---IRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTG 59 Y+++ + K+ II+NK + +QK I + + ++ I++I+ ++ T Sbjct: 6 YVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDDVYFDEQKIEDCIKFIEKWYFPT-- 63 Query: 60 NLMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWM- 118 LP QR+ ++ + +K E + +GRG GK+ L++ + +++ Sbjct: 64 -------LPFQRF----IIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISA-ISDFLS 111 Query: 119 -ILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFT--- 174 L G ++A QA+ FD++R T D R NK K+ K E + Sbjct: 112 TPLHGVKEYHISIVANSEDQAKTSFDEIR--TVLMDNKR----NKTGKTPKAPYEVSKAK 165 Query: 175 ----SFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYI 230 + K+ + T++T GG IFDE+H + +V +G K+ N ++ YI Sbjct: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYI 225 Query: 231 TSGGLKRDGLYDKLVERFKS--EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDV 288 ++ G R+G D + + S + N R F L++ ++V D++ W A P++ Sbjct: 226 STDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKP 285 Query: 289 PK------WSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP-QDTKLTDFNLSV 341 S + EEY + + + +F+ M LP D P ++ T+ + Sbjct: 286 LSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPN 345 Query: 342 FNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVD 401 + G+D + I D +V + + Y + VR + D + + E+ Sbjct: 346 LDNQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGFLD-DVKLEPPIKEWEK 403 Query: 402 RGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDN 461 G L ++D + I + ++ + R K G L K+ D R +I+ R F+ G Sbjct: 404 MGLLTIVDDDVIEIEYIVDWFLKAREKYG--LEKVIADNYRTDIV-----RRAFEDAGIK 456 Query: 462 QRAIRQGFSMNDYI-KLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLE- 518 +R +++ + + + ++ +I+ + +M+W NN AVKI G+ Y KK E Sbjct: 457 LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKIKPDGNKEYIKKDEV 516 Query: 519 KDKIDPTVALTMALEMA 535 + K D +A AL A Sbjct: 517 RRKTDGFMAFVHALYRA 533 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 95.5 bits (236), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 111/459 (24%), Positives = 200/459 (43%), Gaps = 37/459 (8%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 ++F+ L R + KS +A LG + + + + Q+ V++ V+ +S+ Sbjct: 104 KVFIQLARKNAKSQFLAIVAAFCTFLGDE-KQRAYIAGWTRDQSSEVYEAVKTGISSSEL 162 Query: 155 LR-----VYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGED 209 L Y+ +IFK+ S K+ T G N SL I DE H + D Sbjct: 163 LEGKWKEAYSTIEIFKNG-------SVVVPLSKEARKT--GDGKNPSLGIVDEYHAHETD 213 Query: 210 -ITESVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFGLLYM 265 I + ++ G +++ I T+G L R Y+ + + + ND F ++ Sbjct: 214 EIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICE 273 Query: 266 LENHEQVKDKKNWTMALPLIGDVPK-WSGVIEEYELAQGDPALQNKFLAFNMGLPM--QD 322 LE ++ +KD+ NW A P++ + G+ + ++A P FL NM + + +D Sbjct: 274 LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKD 333 Query: 323 TAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTFSV 381 Y + K + + F+ ++G DLS+ DLT+V +V + EG +F Sbjct: 334 NGYMDMSKWQK-CEVDTXDFSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP 392 Query: 382 RSQYEQ---LDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGY 438 ++ ++ +D + +LW E +G L L E ++ + +I +F +++ Y Sbjct: 393 EARLKEKMAIDKVRYDLWAE---QGYLTLTPGEMVDYTIVESWIENFSKDK--EIQEFDY 447 Query: 439 DPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQWA 497 D L +E F QR ++ + K+ E K+ HN V+ WA Sbjct: 448 DKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNF----REKVYEKKVKHNGDPVLFWA 503 Query: 498 LNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 LNN VK+ + M +KK+ K++IDP A+ A A+ Sbjct: 504 LNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAFXRAM 542 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 126/557 (22%), Positives = 240/557 (43%), Gaps = 53/557 (9%) Query: 3 YLNKMLEYNKENGIIINKY---IRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTG 59 Y+++ + K+ II+NK + +QK I + + ++ I++I+ ++ T Sbjct: 6 YVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDDVYFDEQKIEDCIKFIEKWYFPT-- 63 Query: 60 NLMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWM- 118 LP QR+ ++ + +K E + +GRG GK+ L++ + +++ Sbjct: 64 -------LPFQRF----IIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISA-ISDFLS 111 Query: 119 -ILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFT--- 174 L G ++A QA+ FD++R T D R NK K+ K E + Sbjct: 112 TPLHGVKEYHISIVANSEDQAKTSFDEIR--TVLMDNKR----NKTGKTPKAPYEVSKAK 165 Query: 175 ----SFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYI 230 + K+ + T++T GG IFDE+H + +V +G K+ N ++ YI Sbjct: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYI 225 Query: 231 TSGGLKRDGLYDKLVERFKS--EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDV 288 ++ G R+G D + + S + N R F L++ ++V D++ W A P++ Sbjct: 226 STDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKP 285 Query: 289 PK------WSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP-QDTKLTDFNLSV 341 S + EEY + + + +F+ M LP D P ++ T+ + Sbjct: 286 LSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPN 345 Query: 342 FNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVD 401 + G+D + I D +V + + Y + VR + D + + E+ Sbjct: 346 LDNQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGFLD-DVKLEPPIKEWEK 403 Query: 402 RGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDN 461 G L ++D + I + ++ + R K G L K+ D R +I+ R F+ G Sbjct: 404 MGLLTIVDDDVIEIEYIVDWFLKAREKYG--LEKVIADNYRTDIV-----RRAFEDAGIK 456 Query: 462 QRAIRQGFSMNDYI-KLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLE- 518 +R +++ + + + ++ +I+ + +M+W NN AVK+ G+ Y KK E Sbjct: 457 LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKKDEN 516 Query: 519 KDKIDPTVALTMALEMA 535 + K D +A AL A Sbjct: 517 RRKTDGFMAFVHALYRA 533 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 126/557 (22%), Positives = 240/557 (43%), Gaps = 53/557 (9%) Query: 3 YLNKMLEYNKENGIIINKY---IRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTG 59 Y+++ + K+ II+NK + +QK I + + ++ I++I+ ++ T Sbjct: 6 YVDEYINLWKQGKIILNKERIDLFNYLQKHIYSRDDVYFDEQKIEDCIKFIEKWYFPT-- 63 Query: 60 NLMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWM- 118 LP QR+ ++ + +K E + +GRG GK+ L++ + +++ Sbjct: 64 -------LPFQRF----IIANIFLIDKNTDEAFFTEFAIFMGRGGGKNGLISA-ISDFLS 111 Query: 119 -ILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFT--- 174 L G ++A QA+ FD++R T D R NK K+ K E + Sbjct: 112 TPLHGVKEYHISIVANSEDQAKTSFDEIR--TVLMDNKR----NKTGKTPKAPYEVSKAK 165 Query: 175 ----SFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYI 230 + K+ + T++T GG IFDE+H + +V +G K+ N ++ YI Sbjct: 166 IINRATKSVIRYNTSNTKTKDGGREGCVIFDEIHYFFGPEMVNVKRGGLGKKKNRRTFYI 225 Query: 231 TSGGLKRDGLYDKLVERFKS--EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDV 288 ++ G R+G D + + S + N R F L++ ++V D++ W A P++ Sbjct: 226 STDGFVREGYIDAMKHKIASVLSGKVKNSRLFAFYCKLDDPKEVDDRQTWEKANPMLHKP 285 Query: 289 PK------WSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP-QDTKLTDFNLSV 341 S + EEY + + + +F+ M LP D P ++ T+ + Sbjct: 286 LSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPEVDLEKVIAPWKEILATNREIPN 345 Query: 342 FNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVD 401 + G+D + I D +V + + Y + VR + D + + E+ Sbjct: 346 LDNQMCIGGLDFANIRDFASVGLLFR-KNDDYIWLGHSFVRQGFLD-DVKLEPPIKEWEK 403 Query: 402 RGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDN 461 G L ++D + I + ++ + R K G L K+ D R +I+ R F+ G Sbjct: 404 MGLLTIVDDDVIEIEYIVDWFLKAREKYG--LEKVIADNYRTDIV-----RRAFEDAGIK 456 Query: 462 QRAIRQGFSMNDYI-KLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLE- 518 +R +++ + + + ++ +I+ + +M+W NN AVK+ G+ Y KK E Sbjct: 457 LEVLRNPKAIHGLLAPRIDTMFAKHNVIYGDNPLMRWFTNNVAVKVKPDGNKEYIKKDEN 516 Query: 519 KDKIDPTVALTMALEMA 535 + K D +A AL A Sbjct: 517 RRKTDGFMAFVHALYRA 533 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 112/461 (24%), Positives = 201/461 (43%), Gaps = 41/461 (8%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 ++F+ L R + KS +A LG + + + + Q+ V++ V+ +S+ Sbjct: 104 KVFIQLARKNAKSQFLAIVAAFCTFLGDE-KQRAYIAGWTRDQSSEVYEAVKTGISSSEL 162 Query: 155 LR-----VYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGED 209 L Y+ +IFK+ S K+ T G N SL I DE H + D Sbjct: 163 LEGKWKEAYSTIEIFKNG-------SVVVPLSKEARKT--GDGKNPSLGIVDEYHAHETD 213 Query: 210 -ITESVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFGLLYM 265 I + ++ G +++ I T+G L R Y+ + + + ND F ++ Sbjct: 214 EIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICE 273 Query: 266 LENHEQVKDKKNWTMALPLIGDVPK-WSGVIEEYELAQGDPALQNKFLAFNMGLPM--QD 322 LE ++ +KD+ NW A P++ + G+ + ++A P FL NM + + +D Sbjct: 274 LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKD 333 Query: 323 TAYYFTP--QDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTF 379 Y Q ++ F+ F+ ++G DLS+ DLT+V +V + EG +F Sbjct: 334 NGYMDMSKWQKCEVDTFD---FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSF 390 Query: 380 SVRSQYEQ---LDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKI 436 ++ ++ +D + +LW E +G L L E ++ + +I +F +++ Sbjct: 391 MPEARLKEKMAIDKVRYDLWAE---QGYLTLTPGEMVDYTIVESWIENFSKDK--EIQEF 445 Query: 437 GYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQ 495 YD L +E F QR ++ + K+ E K+ HN V+ Sbjct: 446 DYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNF----REKVYEKKVKHNGDPVLF 501 Query: 496 WALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 WALNN VK+ + M +KK+ K++IDP A+ A A+ Sbjct: 502 WALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAFSRAM 542 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 94.7 bits (234), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 112/461 (24%), Positives = 201/461 (43%), Gaps = 41/461 (8%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 ++F+ L R + KS +A LG + + + + Q+ V++ V+ +S+ Sbjct: 104 KVFIQLARKNAKSQFLAIVAAFCTFLGDE-KQRAYIAGWTRDQSSEVYEAVKTGISSSEL 162 Query: 155 LR-----VYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGED 209 L Y+ +IFK+ S K+ T G N SL I DE H + D Sbjct: 163 LEGKWKEAYSTIEIFKNG-------SVVVPLSKEARKT--GDGKNPSLGIVDEYHAHETD 213 Query: 210 -ITESVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFGLLYM 265 I + ++ G +++ I T+G L R Y+ + + + ND F ++ Sbjct: 214 EIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICE 273 Query: 266 LENHEQVKDKKNWTMALPLIGDVPK-WSGVIEEYELAQGDPALQNKFLAFNMGLPM--QD 322 LE ++ +KD+ NW A P++ + G+ + ++A P FL NM + + +D Sbjct: 274 LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKD 333 Query: 323 TAYYFTP--QDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTF 379 Y Q ++ F+ F+ ++G DLS+ DLT+V +V + EG +F Sbjct: 334 NGYMDMSKWQKCEVDTFD---FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSF 390 Query: 380 SVRSQYEQ---LDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKI 436 ++ ++ +D + +LW E +G L L E ++ + +I +F +++ Sbjct: 391 MPEARLKEKMAIDKVRYDLWAE---QGYLTLTPGEMVDYTIVESWIENFSKDK--EIQEF 445 Query: 437 GYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQ 495 YD L +E F QR ++ + K+ E K+ HN V+ Sbjct: 446 DYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNF----REKVYEKKVKHNGDPVLF 501 Query: 496 WALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 WALNN VK+ + M +KK+ K++IDP A+ A A+ Sbjct: 502 WALNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAFARAM 542 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 94.7 bits (234), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 112/459 (24%), Positives = 199/459 (43%), Gaps = 37/459 (8%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 ++F+ L R + KS +A LG + + + + Q+ V++ V+ +S+ Sbjct: 104 KVFIQLARKNAKSQFLAIVAAFCTFLGDE-KQRAYIAGWTRDQSSEVYEAVKTGISSSEL 162 Query: 155 LR-----VYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGED 209 L Y+ +IFK+ S K+ T G N SL I DE H + D Sbjct: 163 LEGKWKEAYSTIEIFKNG-------SVVVPLSKEARKT--GDGKNPSLGIVDEYHAHETD 213 Query: 210 -ITESVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFGLLYM 265 I + ++ G +++ I T+G L R Y+ + + + ND F ++ Sbjct: 214 EIYDVLSSGMVARKEPLMFIITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICE 273 Query: 266 LENHEQVKDKKNWTMALPLIGDVPK-WSGVIEEYELAQGDPALQNKFLAFNMGLPM--QD 322 LE ++ +KD+ NW A P++ + G+ + ++A P FL NM + + +D Sbjct: 274 LEKNDDIKDESNWIKANPIVATYEEGLEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKKD 333 Query: 323 TAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTFSV 381 Y + K L F+ ++G DLS+ DLT+V +V + EG +F Sbjct: 334 NGYMDMSKWQKCEVDTLD-FSGATLWIGGDLSMTTDLTSVGWVGMDDEGDFIVGQHSFMP 392 Query: 382 RSQYEQ---LDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGY 438 ++ ++ +D + +LW E +G L L E ++ + +I +F +++ Y Sbjct: 393 EARLKEKMAIDKVRYDLWAE---QGYLTLTPGEMVDYTIVESWIENFSKDK--EIQEFDY 447 Query: 439 DPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQWA 497 D L +E F QR ++ + K+ E K+ HN V+ WA Sbjct: 448 DKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNF----REKVYEKKVKHNGDPVLFWA 503 Query: 498 LNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 LNN VK+ + M +KK+ K++IDP A+ A A+ Sbjct: 504 LNNAVVKMDDQENIMISKKISKNRIDPAAAVLNAFARAM 542 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 94.4 bits (233), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 108/461 (23%), Positives = 198/461 (42%), Gaps = 32/461 (6%) Query: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLR 156 ++ L R + KS L+A + ++ E + + Q+ V+++V Q +A D L+ Sbjct: 107 YIQLARKNAKSQLLAL-IASYECFLSPEQSEVYIAGWGREQSSIVYNEVLAQVQACDLLK 165 Query: 157 -VYNEN-KIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY-GEDITES 213 Y ++ + K G S K+ T G N SL + DE HT+ +I + Sbjct: 166 GKYTDSYGRIRHKKSG----SIIQPLSKEARKT--GDGKNPSLAVIDEYHTHETSEIYDV 219 Query: 214 VNKGSRQKQDNWQSIYITSGGLKRDGLYDK---LVERFKSEEEFYNDRSFGLLYMLENHE 270 + G +Q+ I T+G Y + + + N+ F ++ L+ + Sbjct: 220 LVSGMVARQNPLIVIITTAGFNLASPCYTEYQYVSKVIDPGSPIENEEYFVMICELDKDD 279 Query: 271 QVKDKKNWTMALPLIGDVPKWSGVI-EEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP 329 +KD++NW A P++ + + E + A P FL NM + + + P Sbjct: 280 DIKDERNWVKANPIVATYEEGMNFLRSELQTALDVPEKMRSFLTKNMNIWVDQKDNGYLP 339 Query: 330 QDT-KLTDFNLSV-FNKNRTYVGIDLSLIGDLTAVSFVCELE-GKTYSYTLTF---SVRS 383 D + + + YVGIDLS+ DLT+VS + ++ G+ Y ++ +F + Sbjct: 340 LDKWRACAIKEQIDLDVRDCYVGIDLSMRIDLTSVSGIVPMDDGRFYVWSHSFIPEDTLA 399 Query: 384 QYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARY 443 + + D +LW V +G + + ++ + YI +++I YDP Sbjct: 400 EKRRTDKVPYDLW---VKQGWITVTPGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNA 456 Query: 444 EILKGLIERYFFDKDGDNQRAIRQGF-SMNDYIKLLKSKLVENKLIHN-QKVMQWALNNT 501 +E +G IRQGF ++++ K + ++ K++H+ V+ WA+ N Sbjct: 457 THFAHEME-----AEGYVMVEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNA 511 Query: 502 AVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAV--SDEV 540 VK + + M K +IDP AL A+ A+ SDEV Sbjct: 512 VVKQDHNENIMLDKDKSTGRIDPIAALINAMVRAILKSDEV 552 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 94.0 bits (232), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 129/550 (23%), Positives = 230/550 (41%), Gaps = 43/550 (7%) Query: 16 IIINKYIRKTIQKQI-----RIHNKYIYRYDR--VTQAIEWIQDNFYLTTGNLM--KIEL 66 I+ ++IR Q+ + Y Y++DR +A +++Q ++G L K++L Sbjct: 22 IVACRFIRLACQRHFDDLKKSLDKNYPYKFDRDLAERACKFVQ-LLPHSSGELAGQKLKL 80 Query: 67 LPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGG 126 P Q + + + G+ +K + E ++ + R +GKS A + G+ Sbjct: 81 EPWQSFIFCSIFGWVTKKDKKRRFR---EAYIRVARKNGKSFFAAGVGIYTFCADGENSA 137 Query: 127 ESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTND 186 E A QA+ VF R LR + ++ + + + F K + Sbjct: 138 EVYCGATTMAQAKKVFTPARQMASRLPALRSRFDISVWTDSLTRPDGSVFAPMAGKPGD- 196 Query: 187 TLRAQGGNSSLNIFDEVHTYGED-ITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLV 245 G + I DE H + D + E++ G + I T+G YDK Sbjct: 197 -----GDSPHCAIIDEYHEHDTDHMYEAMTMGMGARSQPLTLIITTAGSSLESPCYDKDK 251 Query: 246 ERFKSEEEF-YNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGD 304 E ++ E N+R FG++Y L+ + D KN A P + K+S ++E E+A+ Sbjct: 252 EVKEAIEGITCNERLFGMIYELDVGDDWTDPKNLIKANPNLNVSVKYSDLVELLEVAKQV 311 Query: 305 PALQNKFLAFNMGLPMQ-DTAYYFTPQDTKLTDFNLSV--FNKNRTYVGIDLSLIGDLTA 361 P N F + + + +A+Y Q D NL + F + VG+DL+ D+ A Sbjct: 312 PRKVNAFKTKRLNIWVSGKSAFYNMEQWKAAEDKNLKLEDFANDTCNVGLDLAKKLDMNA 371 Query: 362 --VSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQEL------WTEFVDRGELILLDTEYI 413 F E+EGK + Y + + + T +L + +F + G L D Sbjct: 372 GIRLFTREIEGKRHYYCIKPKFWVPEDTIHTTDPKLLKTADRYQKFYEMGALEATDGAEA 431 Query: 414 NVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MN 472 + +++ I D + + R+ +I DPA L+ +E Y F IRQ ++ M+ Sbjct: 432 DYREILASILDMQGEN--RIDEIDIDPAGATALRHQLEDYGF-----TVVDIRQDYTNMS 484 Query: 473 DYIKLLKSKLVENKLIHN-QKVMQWALNNTAVKIGQSGDYMY--TKKLEKDKIDPTVALT 529 +K L++ L + H+ ++ W ++N K D + TK + KID AL Sbjct: 485 PAMKELEAALAGGRFHHDGNPILTWCISNVIGKFIPGSDDLVRPTKGDNQSKIDGATALF 544 Query: 530 MALEMAVSDE 539 A+ A+ +E Sbjct: 545 NAMTRAMLNE 554 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 93.6 bits (231), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 114/493 (23%), Positives = 208/493 (42%), Gaps = 58/493 (11%) Query: 91 NLVNEIFLNLGRGSGKSSLMATRVLNWMI--LGGQYGGESLVIAYDNTQARHVFDQVRNQ 148 N+ +I + +GRG GK+ L++ ++ ++I G ++A QA+ FD++ N Sbjct: 85 NVYKKILIMMGRGGGKNGLISG-IIAYLISPFHGIKNYNVSLVANSEDQAKTSFDEIYNT 143 Query: 149 TEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGE 208 E++ L+ +I+ +TK ++ + + +T++ G + +FDE+H Y Sbjct: 144 VESNPKLK-----EIYYNTKSEIKSIHTNSVMRFRTSNGNTKDGLRDGMVVFDEIHQYES 198 Query: 209 DITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFK---SEEEFYNDRSFGLLYM 265 + V+K K N + YI + G R+G D + ++ K S +N F + Sbjct: 199 NKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDSMKDKAKKVLSGAARWNS-MFPFICK 257 Query: 266 LENHEQVKDKKNWTMALPL----IGDVPK--WSGVIEEYELAQGDPALQNKFLAFNMGLP 319 ++ +V DK+ W A P+ + D + + V E+YE DP+ + +F+ M P Sbjct: 258 IDEEHEVDDKEKWQKANPMFHQPMSDYAQELFDMVCEQYEEMIEDPSNREEFMTKRMDFP 317 Query: 320 MQDTAYYFTPQDTKL-TDFNLSVFNKNRTYVGIDLSLIGDLTAV---------------S 363 + D + + T L G+D + I D AV S Sbjct: 318 VMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRDFAAVGLLFKDRDDYVWLSHS 377 Query: 364 FV-CELEGKTYSYTL---TFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLI 419 FV E Y Y+ + + + Q+ + +QE G L ++D IN ++ Sbjct: 378 FVRKEFVDTYYGYSKRKDSINGKRQFAPIKKWEQE--------GLLTVIDEASINPQYIV 429 Query: 420 PYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMN-----DY 474 + R + G L++I D R EILK L ER F+ N + G+ + Sbjct: 430 DWFVKMRDEEGYDLQRIVSDNFRMEILKPLFEREGFEVLSKNTFSAPPGYQIEIVRNPRA 489 Query: 475 IKLLKSKLVENKLIHNQKV------MQWALNNTAVKIGQSGDYMYTKKLE-KDKIDPTVA 527 I L + +E +++ V M+W +N ++ G+ Y KK + + K D A Sbjct: 490 IDSLLAPRIETAFANHRVVFGHNDMMRWYTHNVLRRLKSDGNVEYVKKEDTRRKTDGFKA 549 Query: 528 LTMALEMAVSDEV 540 A+ A + E+ Sbjct: 550 FEYAMYRADTLEI 562 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 92.8 bits (229), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 109/490 (22%), Positives = 209/490 (42%), Gaps = 52/490 (10%) Query: 91 NLVNEIFLNLGRGSGKSSLMATRVLNWMI--LGGQYGGESLVIAYDNTQARHVFDQVRNQ 148 N+ +I + +GRG GK+ L++ ++ +++ G ++A QA+ FD++ N Sbjct: 85 NVYKKILIMMGRGGGKNGLISG-IIAYLLSPFHGIKNYNVSLVANSEDQAKTSFDEIYNT 143 Query: 149 TEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGE 208 E++ L+ +I+ +TK ++ + + +T++ G + +FDE+H Y Sbjct: 144 VESNPKLK-----EIYYNTKSEIKSIHTNSVMRFRTSNGNTKDGLRDGMVVFDEIHQYES 198 Query: 209 DITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFK---SEEEFYNDRSFGLLYM 265 + V+K K N + YI + G R+G D + ++ K S +N F + Sbjct: 199 NKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDSMKDKAKKVLSGNARWNS-MFPFICK 257 Query: 266 LENHEQVKDKKNWTMALPLIGDVPK------WSGVIEEYELAQGDPALQNKFLAFNMGLP 319 ++ +V DK+ W A P+ + + V E+YE DP+ + +F+ M P Sbjct: 258 IDEEHEVDDKEKWQKANPMFHEPMSDYAQELFDMVCEQYEEMVEDPSNREEFMTKRMDFP 317 Query: 320 MQDTAYYFTPQDTKL-TDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSYTLT 378 + D + + T L G+D + I D AV + + G Y + Sbjct: 318 VMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRDFAAVGLLFK-NGADYVWLSH 376 Query: 379 FSVRSQY-----------EQLDTEQQ----ELWTEFVDRGELILLDTEYINVNDLIPYIN 423 VR ++ + ++ ++Q + W + G L ++D IN ++ + Sbjct: 377 SFVRKEFVDTYYGYSKRKDSINGKRQFAPIKKWEQ---EGLLTVIDEASINPQYIVDWFV 433 Query: 424 DFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSM----------ND 473 R + G L++I D R EILK L ER F+ N G+ + + Sbjct: 434 KMRDEEGYDLQRIVSDNFRMEILKPLFEREGFEVLSKNTFTAPPGYQIEIVRNPRAIDSL 493 Query: 474 YIKLLKSKLVENKLI--HNQKVMQWALNNTAVKIGQSGDYMYTKKLE-KDKIDPTVALTM 530 +++ +K+I HN +M+W +N ++ G+ Y KK + + K D A Sbjct: 494 LAPRIETAFANHKVIFGHND-MMRWYTHNILRRLKSDGNVEYVKKEDTRRKTDGFKAFEY 552 Query: 531 ALEMAVSDEV 540 A+ A + E+ Sbjct: 553 AMYRADTLEI 562 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 89.7 bits (221), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 134/557 (24%), Positives = 234/557 (42%), Gaps = 55/557 (9%) Query: 16 IIINKYIRKTIQKQI-----RIHNK-YIYRYDR--VTQAIEWIQDNFYLTTGNL--MKIE 65 I+ KYI+ Q+ + +++K Y YR+DR +A ++Q ++G+L K++ Sbjct: 22 ILAGKYIKLACQRHLDDLKNSVNDKNYPYRFDRDLAERACCFVQ-LLPHSSGDLKGQKLK 80 Query: 66 LLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 P Q + + + G+ V +KG + E ++ +GR +GKS A + G+ Sbjct: 81 AEPWQLFIFSSIFGW--VTKKGKKRRF-KETYIRVGRKNGKSFFAAGIGMYMFCADGENA 137 Query: 126 GESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTN 185 E A QA+ VF + LR ++ + + F + Sbjct: 138 AEVYCGATKMAQAKKVFTPASQMAKLLPDLRSRFNVSVWAEKLTREDGSVFAPVVGNPGD 197 Query: 186 DTLRAQGGNSSLNIFDEVHTYGEDI---TESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 G + S I DE H + DI T + G+R + I T+G YD Sbjct: 198 ------GDSPSCAIIDEYHEHPTDILYSTMTTGMGARSQP--LTLIITTAGKDIESPCYD 249 Query: 243 KLVERFKS-EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELA 301 K E + ++ N+R FG++Y L+ + +D N A P +G + ++E+ LA Sbjct: 250 KDNEVKQCLDKMLPNERLFGMIYELDALDNWQDPCNLIKANPNLGVSVFYEDLVEKLHLA 309 Query: 302 QGDPALQN--KFLAFNMGLPMQDTAYYFTPQDTKLTDFN--LSVFNKNRTYVGIDLSLIG 357 + P + N K NM + + TA++ K D N LS F +++G+DL+ Sbjct: 310 KTVPRMTNDIKTKHLNMWVSGK-TAFFNMDHWAKAEDKNLKLSNFKGEESHLGLDLAAKL 368 Query: 358 DLTA--VSFVCELEGKTYSYTL----------TFSVRSQYEQLDTEQQELWTEFVDRGEL 405 DL A F E+EGK + Y + S+ + + Q+ W G Sbjct: 369 DLNAGVPVFTREIEGKRHYYCVGSKFWVPEDTVHSIDPKIAKTAKRYQK-WVNMQWAGGS 427 Query: 406 ILLDTEYINVN--DLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQR 463 +L DT+ + +++ + D + G R+ I DP L + +G Sbjct: 428 LLNDTDGAEADYREILASVIDMTERDGVRIASIPIDPTGATALS-----HELADNGFEPI 482 Query: 464 AIRQGFS-MNDYIKLLKSKLVENKLIHN-QKVMQWALNNT-AVKIGQSGDYMYTKKLEK- 519 IRQ F+ M+ +K L++ L + H+ ++ W ++N + S D + K +K Sbjct: 483 NIRQDFTNMSPPMKELEAALAGGRFHHDGNPILAWCISNVLGTFVPGSDDRVRPTKGDKQ 542 Query: 520 DKIDPTVALTMALEMAV 536 KID AL MA+ A+ Sbjct: 543 SKIDGATALLMAIGRAM 559 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 77.8 bits (190), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 114/563 (20%), Positives = 231/563 (41%), Gaps = 68/563 (12%) Query: 18 INKYIRKTIQ-------KQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQ 70 + KY +K + K I++ +++ + W DN +L+ + +E+LP Sbjct: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DN-HLSNKAIKFVEMLPDP 61 Query: 71 RW--------WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG- 121 + + + ++G +G Q + + ++++ R GKS +++ +N ++ G Sbjct: 62 KTNQPMPLMEFQKFIVGSLYGWRRG-QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 -GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 ++ + V + QA+ +F Q + + K K +E + F Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVF 179 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 +N+ G + ++ I DE+ + +D S K Q N ++ +++ G D L Sbjct: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNL 236 Query: 241 YDKLVERFKS-----EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVI 295 ++ + +K EE D F +++ E+V+D+ W A+PL+ ++ Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 296 EEY------ELAQGDPALQNKFLAFNMG--------LPMQDTAYYFTPQDTKLTDFNLSV 341 + EL +G + FN+ L + D TP + Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---------MPN 347 Query: 342 FNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTF-SVRSQYEQLDTEQQELWTEF 399 N Y+G+DLS + DLT+V F+ + K + ++ +F +R+ EQ + + Sbjct: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 Query: 400 VDRGEL--ILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFD- 456 ++RGE D+ I+ +I +I F + ++ + YDP + IE D Sbjct: 408 IERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 Query: 457 ---KDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM- 512 + G + +A+ Q IK + + + ++ HN ++ N AV I D + Sbjct: 468 PLIEVGQSFKALSQS------IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 Query: 513 YTKKLEKDKIDPTVALTMALEMA 535 KK+ + KIDP +++ A A Sbjct: 522 INKKMNRQKIDPIISIITAFTEA 544 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 77.8 bits (190), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 114/563 (20%), Positives = 231/563 (41%), Gaps = 68/563 (12%) Query: 18 INKYIRKTIQ-------KQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQ 70 + KY +K + K I++ +++ + W DN +L+ + +E+LP Sbjct: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DN-HLSNKAIKFVEMLPDP 61 Query: 71 RW--------WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG- 121 + + + ++G +G Q + + ++++ R GKS +++ +N ++ G Sbjct: 62 KTNQPMPLMEFQKFIVGSLYGWRRG-QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 -GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 ++ + V + QA+ +F Q + + K K +E + F Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVF 179 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 +N+ G + ++ I DE+ + +D S K Q N ++ +++ G D L Sbjct: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNL 236 Query: 241 YDKLVERFKS-----EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVI 295 ++ + +K EE D F +++ E+V+D+ W A+PL+ ++ Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 296 EEY------ELAQGDPALQNKFLAFNMG--------LPMQDTAYYFTPQDTKLTDFNLSV 341 + EL +G + FN+ L + D TP + Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---------MPN 347 Query: 342 FNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTF-SVRSQYEQLDTEQQELWTEF 399 N Y+G+DLS + DLT+V F+ + K + ++ +F +R+ EQ + + Sbjct: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 Query: 400 VDRGEL--ILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFD- 456 ++RGE D+ I+ +I +I F + ++ + YDP + IE D Sbjct: 408 IERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 Query: 457 ---KDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM- 512 + G + +A+ Q IK + + + ++ HN ++ N AV I D + Sbjct: 468 PLIEVGQSFKALSQS------IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 Query: 513 YTKKLEKDKIDPTVALTMALEMA 535 KK+ + KIDP +++ A A Sbjct: 522 INKKMNRQKIDPIISIITAFTEA 544 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 77.8 bits (190), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 114/563 (20%), Positives = 231/563 (41%), Gaps = 68/563 (12%) Query: 18 INKYIRKTIQ-------KQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQ 70 + KY +K + K I++ +++ + W DN +L+ + +E+LP Sbjct: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DN-HLSNKAIKFVEMLPDP 61 Query: 71 RW--------WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG- 121 + + + ++G +G Q + + ++++ R GKS +++ +N ++ G Sbjct: 62 KTNQPMPLMEFQKFIVGSLYGWRRG-QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 -GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 ++ + V + QA+ +F Q + + K K +E + F Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVF 179 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 +N+ G + ++ I DE+ + +D S K Q N ++ +++ G D L Sbjct: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNL 236 Query: 241 YDKLVERFKS-----EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVI 295 ++ + +K EE D F +++ E+V+D+ W A+PL+ ++ Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 296 EEY------ELAQGDPALQNKFLAFNMG--------LPMQDTAYYFTPQDTKLTDFNLSV 341 + EL +G + FN+ L + D TP + Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---------MPN 347 Query: 342 FNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTF-SVRSQYEQLDTEQQELWTEF 399 N Y+G+DLS + DLT+V F+ + K + ++ +F +R+ EQ + + Sbjct: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 Query: 400 VDRGEL--ILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFD- 456 ++RGE D+ I+ +I +I F + ++ + YDP + IE D Sbjct: 408 IERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 Query: 457 ---KDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM- 512 + G + +A+ Q IK + + + ++ HN ++ N AV I D + Sbjct: 468 PLIEVGQSFKALSQS------IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 Query: 513 YTKKLEKDKIDPTVALTMALEMA 535 KK+ + KIDP +++ A A Sbjct: 522 INKKMNRQKIDPIISIITAFTEA 544 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 77.4 bits (189), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 114/563 (20%), Positives = 231/563 (41%), Gaps = 68/563 (12%) Query: 18 INKYIRKTIQ-------KQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQ 70 + KY +K + K I++ +++ + W DN +L+ + +E+LP Sbjct: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DN-HLSNKAIKFVEMLPDP 61 Query: 71 RW--------WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG- 121 + + + ++G +G Q + + ++++ R GKS +++ +N ++ G Sbjct: 62 KTNQPMPLMEFQKFIVGSLYGWRRG-QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 -GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 ++ + V + QA+ +F Q + + K K +E + F Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVF 179 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 +N+ G + ++ I DE+ + +D S K Q N ++ +++ G D L Sbjct: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNL 236 Query: 241 YDKLVERFKS-----EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVI 295 ++ + +K EE D F +++ E+V+D+ W A+PL+ ++ Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 296 EEY------ELAQGDPALQNKFLAFNMG--------LPMQDTAYYFTPQDTKLTDFNLSV 341 + EL +G + FN+ L + D TP + Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---------MPN 347 Query: 342 FNKNRTYVGIDLSLIGDLTAVSFVCELEG-KTYSYTLTF-SVRSQYEQLDTEQQELWTEF 399 N Y+G+DLS + DLT+V F+ + K + ++ +F +R+ EQ + + Sbjct: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 Query: 400 VDRGEL--ILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFD- 456 ++RGE D+ I+ +I +I F + ++ + YDP + IE D Sbjct: 408 IERGEAETTQSDSGMIDSKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 Query: 457 ---KDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM- 512 + G + +A+ Q IK + + + ++ HN ++ N AV I D + Sbjct: 468 PLIEVGQSFKALSQS------IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 Query: 513 YTKKLEKDKIDPTVALTMALEMA 535 KK+ + KIDP +++ A A Sbjct: 522 INKKMNRQKIDPIISIITAFTEA 544 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 77.4 bits (189), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 114/563 (20%), Positives = 231/563 (41%), Gaps = 68/563 (12%) Query: 18 INKYIRKTIQ-------KQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQ 70 + KY +K + K I++ +++ + W DN +L+ + +E+LP Sbjct: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DN-HLSNKAIKFVEMLPDP 61 Query: 71 RW--------WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG- 121 + + + ++G +G Q + + ++++ R GKS +++ +N ++ G Sbjct: 62 KTNQPMPLMEFQKFIVGSLYGWRRG-QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 -GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 ++ + V + QA+ +F Q + + K K +E + F Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVF 179 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 +N+ G + ++ I DE+ + +D S K Q N ++ +++ G D L Sbjct: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNL 236 Query: 241 YDKLVERFKS-----EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVI 295 ++ + +K EE D F +++ E+V+D+ W A+PL+ ++ Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 296 EEY------ELAQGDPALQNKFLAFNMG--------LPMQDTAYYFTPQDTKLTDFNLSV 341 + EL +G + FN+ L + D TP + Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---------MPN 347 Query: 342 FNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTF-SVRSQYEQLDTEQQELWTEF 399 N Y+G+DLS + DLT+V F+ + K + ++ +F +R+ EQ + + Sbjct: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 Query: 400 VDRGEL--ILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFD- 456 ++RGE D+ I+ +I +I F + ++ + YDP + IE D Sbjct: 408 IERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 Query: 457 ---KDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM- 512 + G + +A+ Q IK + + + ++ HN ++ N AV I D + Sbjct: 468 PLIELGQSFKALSQS------IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 Query: 513 YTKKLEKDKIDPTVALTMALEMA 535 KK+ + KIDP +++ A A Sbjct: 522 INKKMNRQKIDPIISIITAFTEA 544 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 77.4 bits (189), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 114/563 (20%), Positives = 231/563 (41%), Gaps = 68/563 (12%) Query: 18 INKYIRKTIQ-------KQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQ 70 + KY +K + K I++ +++ + W DN +L+ + +E+LP Sbjct: 5 VTKYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHW--DN-HLSNKAIKFVEMLPDP 61 Query: 71 RW--------WYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG- 121 + + + ++G +G Q + + ++++ R GKS +++ +N ++ G Sbjct: 62 KTNQPMPLMEFQKFIVGSLYGWRRG-QYRMFTKAYISMARKQGKSLIVSGMSVNELLFGQ 120 Query: 122 -GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTF 180 ++ + V + QA+ +F Q + + K K +E + F Sbjct: 121 YPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKT-DVRKTDIEDVLSSSVF 179 Query: 181 KKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL 240 +N+ G + ++ I DE+ + +D S K Q N ++ +++ G D L Sbjct: 180 APLSNNPDAVDGKDPTVAILDELASMPDDEMYSRFKTGMTLQKNPLTLLVSTAG---DNL 236 Query: 241 YDKLVERFKS-----EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVI 295 ++ + +K EE D F +++ E+V+D+ W A+PL+ ++ Sbjct: 237 NSQMYQEYKYIKRILNEEVRADNYFVYCAEMDSQEEVQDETKWIKAMPLLESKEHRKTIL 296 Query: 296 EEY------ELAQGDPALQNKFLAFNMG--------LPMQDTAYYFTPQDTKLTDFNLSV 341 + EL +G + FN+ L + D TP + Sbjct: 297 QNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITP---------MPN 347 Query: 342 FNKNRTYVGIDLSLIGDLTAVSFV-CELEGKTYSYTLTF-SVRSQYEQLDTEQQELWTEF 399 N Y+G+DLS + DLT+V F+ + K + ++ +F +R+ EQ + + Sbjct: 348 INGKDVYIGVDLSRLDDLTSVGFIFPNDDKKVFLHSHSFIGLRTNLEQKSKRDKINYELA 407 Query: 400 VDRGEL--ILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFD- 456 ++RGE D+ I+ +I +I F + ++ + YDP + IE D Sbjct: 408 IERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTIESMALDW 467 Query: 457 ---KDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHNQKVMQWALNNTAVKIGQSGDYM- 512 + G + +A+ Q IK + + + ++ HN ++ N AV I D + Sbjct: 468 PLIELGQSFKALSQS------IKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNVK 521 Query: 513 YTKKLEKDKIDPTVALTMALEMA 535 KK+ + KIDP +++ A A Sbjct: 522 INKKMNRQKIDPIISIITAFTEA 544 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 70.9 bits (172), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 122/533 (22%), Positives = 224/533 (42%), Gaps = 54/533 (10%) Query: 41 DRVTQAIEWIQDNFYLT----TGNLMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEI 96 DR + ++++Q G LM++EL + + + M G+ +EKG V ++ E Sbjct: 49 DRANEMLDFVQSFIRHVKGPLAGQLMELELW--EMFVFANMYGWYHKNEKGKTVRVIRES 106 Query: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLR 156 ++ + + +GK+ + A +L M + G + A D QA++ + + E S+ L Sbjct: 107 YVQVPKKNGKTIIAAGALLYAMYGELELGADCYCAASDYEQAQNAAEPIAQAIENSEPLA 166 Query: 157 VYNENKIFKST---------KQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYG 207 + + I+K + + +++ FK T +T +G N + DE+H Sbjct: 167 RHTQ--IYKGVNGTVSGAMYRYSINGIAYQNKFKVLTKNTKGLEGKNPYFVLNDELHA-Q 223 Query: 208 EDITESVNKGSRQ---KQDNWQSIYITSGGLKRDGL----YDKLVERFKSEEEFYNDRSF 260 E++ N S Q +Q +I G G+ Y KLV E +D F Sbjct: 224 ENMDMYDNLKSAQISREQPMMLNISTAGKGASSVGMRVYKYAKLV-----LENDDDDSLF 278 Query: 261 GLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLAFNMGLPM 320 ++ + +D+K W M P IG + E++ A+ + +FL+ ++ + + Sbjct: 279 VAIWEPNKNYDWEDRKVWKMVNPNIGVSVTMEQLEIEFKKAKQSAHSKAEFLSKHLNVFV 338 Query: 321 QDTAYYFT-PQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSF---VCELEGKTYSYT 376 YF Q + +L Y+G+DLS DLT VS + EG++ Sbjct: 339 NGADNYFEHDQVQHVLVKDLGDLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRS---- 394 Query: 377 LTFSVRSQY----EQLDTEQQE---LWTEFVDRGELILLDTEYINVNDLIPYINDFRSKT 429 V+ Y E +D +++E +T+ V+RG D + I+ + ++ YI + Sbjct: 395 -IIKVKQMYFLPNENIDFKEKEDNVPYTDMVERGFATFCDGKMIDQDQIMEYIVECMDLY 453 Query: 430 GCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIH 489 +++I YDPA + L +E + NQ ++D L + E +LI Sbjct: 454 D--VQQINYDPAMSQKLIEKLENLGLECIAVNQYPNVMNAMLDDSEIL----IYEKRLIT 507 Query: 490 NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALE--MAVSDEV 540 + + + N V +G +K+ K KID VA A + M V D + Sbjct: 508 DNPLFVYCALNVVVVTNINGMKAPSKRQSKKKIDGFVAFLCAHKETMMVMDSI 560 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 70.1 bits (170), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 122/563 (21%), Positives = 230/563 (40%), Gaps = 61/563 (10%) Query: 17 IINKYIRKTIQKQIR-------IHNKYIYRYDRVTQAIEWIQDNFYLTTGNLM--KIELL 67 + +Y++ Q+ I KY + ++ ++I++ +D T G + +++L Sbjct: 18 VAGRYVKLACQRHIDDLERSKLAPYKYEFDLEKALESIDFFED-LRFTDGEIAGQQVKLF 76 Query: 68 PTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGE 127 Q + + G+ KG + ++ L R + KS L + + + Sbjct: 77 GFQDFIVGSIFGWVC---KGTGYRRFKKSYVQLARKNAKSLLNSGIGIKLAAFDKYPNAQ 133 Query: 128 SLVIAYDNTQARHVFDQVRNQTEASDTLR----VYNENKIFKSTKQGLEFTSFKTTFKKQ 183 A QAR V+ Q R E LR + + + I +S G E + Sbjct: 134 VYCTATKMKQARIVWKQARKFIEIEPDLREIFKIKDHDAIIESLINGGEIMAL------- 186 Query: 184 TNDTLRAQGGNSSLNIFDEVHTYGED-ITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 DT G + I DE H++ + + + + GS + ++ SI IT+ G +G Sbjct: 187 GRDTGTIDGFDPHGGIIDEYHSHKTNQMVKLLEDGSVNQAESLISI-ITTAGFNLNGPCY 245 Query: 243 KLVERFKS--EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPK----WSGVIE 296 K E K+ E ND F + ++ + + D NW A PL+ +PK E Sbjct: 246 KEWEYCKNVLEGIVNNDEYFIYIAQMDVEDDIWDPNNWLKANPLVAKLPKGLENLKRFAE 305 Query: 297 EYELAQGDPALQNKFLAFNMGLPMQ-DTAYYFTPQDTKL--TDFNLSVFNKNRTYVGIDL 353 E + GD L+N FL ++ + + Y P K+ + L F Y G+DL Sbjct: 306 ESKQKGGDD-LKN-FLTKSLNIWYEFSNDQYIGPSVWKVGASKLTLENFKGKTCYAGLDL 363 Query: 354 SLIGDLTAVSFVCELE---------GKTYSYTLTFSVR---SQYEQLDTEQQELWTEFVD 401 S GDLT+++ + E K + ++ +F + +++ Q D ++W E Sbjct: 364 SSGGDLTSLALIFPYEFEKENGEKVRKYFIHSHSFIPKRRVAEHIQSDDVPYDVWIE--- 420 Query: 402 RGELILLDTEYINVND---LIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKD 458 G L + +T D +I Y+ D + ++ ++GYDP + +E FD Sbjct: 421 NGLLTVTETLGGIKTDYKYIIKYLRDLIEEFQLKIIQLGYDPHNADTFLQDLEELGFD-- 478 Query: 459 GDNQRAIRQGFSMNDYIKLLKSKLVENKLIHNQK--VMQWALNNTAVKIGQSGDYMYTKK 516 + +ND + K + + +N++ ++ W++ N + +G+ K Sbjct: 479 --CVEIFQSCKWLNDPTEDFKLECEAGNIEYNEENELLSWSVVNAKLVSNSNGEIKIDKN 536 Query: 517 LEKDKIDPTVALTMALEMAVSDE 539 L++ +IDP A+ A ++A E Sbjct: 537 LQEKRIDPVDAVIDAYKLAFKSE 559 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 69.3 bits (168), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 107/529 (20%), Positives = 206/529 (38%), Gaps = 75/529 (14%) Query: 38 YRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRWWYELMLG----YDMVDEKGIQVNLV 93 + ++ + I ++ NF L G K+ W+ L+L YD + V Sbjct: 10 FNLEKYVRIIAYLHKNFRLPNGKKFKV------LNWHALVLSLYYCYDGLT--------V 55 Query: 94 NEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGE--SLVIAYDN-------------TQA 138 EI +GRG+ K+ ++A + ++ G+ G E + + D T Sbjct: 56 IEIAAIVGRGNAKT-MLAEFIAGLELIAGEKGAEFIGMSVTVDKGIESIQKPLNGLVTNP 114 Query: 139 RHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLN 198 F ++ + + S T+ + N + + +G TF+ + GG L Sbjct: 115 GTSFSKLFKKGDISYTIDSMSINPLSRLRSKG-------ATFRIVSAADSALNGGREKLA 167 Query: 199 IFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-EEEFYND 257 + DE T+ + ++ +G + + + ITS R G YD+ ++ F+ +E N Sbjct: 168 VVDEFGTFPNNPLPTIREGLEKNEG--LLLTITSNNKVRGGAYDEELDTFRGYNDEMDNF 225 Query: 258 RSFGLLYMLENHEQVKDKKNWTMALPLIGDVP---KWSGVIEEYELAQGDPALQNKFLAF 314 + +GL++ L+++ Q++D W A P + + + E A+ N + Sbjct: 226 KQWGLIFELDDYSQIEDPNEWYKANPALDEAKGTVSTETITRELNAARHSTIKANNLFSK 285 Query: 315 NMGLPMQDTAYYFTPQDTKL-TDFNLS-VFNKNRTYVGIDLSLIGDLTAVSFVCELEGKT 372 + +FT ++ ++ TD + VF +G D SL GD + ++E Sbjct: 286 RFNFSVNAVTSFFTAEEIEIVTDLDFEKVFYDKWAVLGCDFSLSGDTWGNVLLTKVEDTL 345 Query: 373 YSYTLTF---SVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKT 429 Y Y + +V +Y+ L D + + + + D + Sbjct: 346 YIYPIPIRPKNVADKYKHLSGT--------------FYHDEDKNDTQAAVKLLFDKLQEL 391 Query: 430 GCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQ----GFSMNDYIKLLKSKLVEN 485 L IGYDPA Y F+++ R + + F+++ +I L+ L Sbjct: 392 RIGLVGIGYDPAYSANF-----LYLFEQNKIKARLMEKVKQNAFTVSQHIMSLQRLLKTR 446 Query: 486 KLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 L++N ++M+ L N VK + K ++ KID A AL + Sbjct: 447 GLLYNSEIMKQHLRNARVKYKDTTQVRLVKVSDQSKIDLVDAAVNALAV 495 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 67.8 bits (164), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 114/496 (22%), Positives = 204/496 (41%), Gaps = 48/496 (9%) Query: 62 MKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG 121 M I L P Q + ++ G+ + + G++ E + + R +GKS++ A L Sbjct: 74 MPITLEPWQLFCICVVFGW-VRKKSGLR--RFREAYNEIPRKNGKSAMSAGVGLYMFACD 130 Query: 122 GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFK 181 ++G E A QA VF R + ++ LR E + Q + F+ Sbjct: 131 DEFGAEVYSGATTEKQAWEVFRPARLMAQRTEPLR---EAFGIEVHAQSMSRPEDGARFE 187 Query: 182 KQTNDTLRAQGGNSSLNIFDEVHTYGEDI---TESVNKGSRQKQDNWQSIYITSGGLKRD 238 D G + S + DE H + D T G+R++ IT+ G + Sbjct: 188 PLIGDP--GDGASPSCALIDEYHEHQTDALYQTMQTGMGARRQP---LIFGITTAGYNIE 242 Query: 239 G-LYDKLVERFKSEEEFY-NDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIE 296 G YDK E + E ND FG++Y +++ + D A P +G V Sbjct: 243 GPCYDKRREVIEMLEGIVPNDELFGIIYTIDDGDDWTDPAVLRKANPNMG-----ISVYS 297 Query: 297 EYELAQGDPALQN-------KFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSV--FNKNRT 347 +Y L+Q A+ N K N+ + +D A++ K D +L++ F + Sbjct: 298 DYLLSQQRAAINNPRKVGVFKTKHLNIWVAAKD-AFFNLVNWQKCEDRSLTLERFEGHTC 356 Query: 348 YVGIDLSLIGDLTAVS--FVCELEGKTYSYTLTFSVRSQYEQL------DTEQQELWTEF 399 + DL+ DL A+ F E++GKT+ Y + Y+ + D+ E + ++ Sbjct: 357 ILAFDLARKLDLNAMVRLFTREIDGKTHYYCVAPKFFVPYDTIYSADVTDSRTAERYQKW 416 Query: 400 VDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDG 459 V+ G + + D I+ +++ +K RL + P L + D++ Sbjct: 417 VEGGFITVTDGAEIDYREILE-----SAKEANRLNAVEESPIDPHGATNL-SHHLADENL 470 Query: 460 DNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQWALNNTAVK--IGQSGDYMYTKK 516 + I+ +M+D +K L++ + + H+ VM W ++N K G K+ Sbjct: 471 NPITIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMTWCISNVIGKHIPGDDDVVRPIKQ 530 Query: 517 LEKDKIDPTVALTMAL 532 ++KID VAL MA+ Sbjct: 531 GNENKIDGAVALIMAI 546 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 67.4 bits (163), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 119/558 (21%), Positives = 222/558 (39%), Gaps = 55/558 (9%) Query: 16 IIINKYIRKTIQKQI-----RIHNKYIYRYD-----RVTQAIEWIQDNFYLTTGNLMKIE 65 I+ +++ + Q+ + + YR+D RV + I+ + M I Sbjct: 24 IVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERVAKFIQLLPHTKGEWAFKRMPIT 83 Query: 66 LLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 L P Q + + + V+ KG ++ E++ + R +GKS++ A L ++G Sbjct: 84 LEPWQ--LFVICCAFGWVN-KGSRLRRFREVYTEIPRKNGKSAISAGVALYCFACDNEFG 140 Query: 126 GESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTN 185 E A QA VF R + + L E + + F+ Sbjct: 141 AEVYSGATTEKQAWEVFRPARLMCKRTPML---TEAFGIEVNASNMNRPEDGARFEPLIG 197 Query: 186 DTLRAQGGNSSLNIFDEVHTYGED---ITESVNKGSRQKQDNWQSIYITSGGLKRDG-LY 241 + G + + DE H + D T G+R++ W IT+ G +G Y Sbjct: 198 NP--GDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWA---ITTAGYNIEGPCY 252 Query: 242 DKLVERFKS-EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYEL 300 DK E + ND FG++Y ++ + D + A P IG ++ + + Sbjct: 253 DKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQR 312 Query: 301 AQGDPALQNKFLAFNMGLPMQDTAYYF------TPQDTKLTDFNLSVFNKNRTYVGIDLS 354 A+ + L N F ++ + + + YF + +D LT L F + DL+ Sbjct: 313 AKNNARLANVFKTKHLNIWVSARSAYFNLVSWQSCEDKSLT---LEQFEGQPCILAFDLA 369 Query: 355 LIGDLTAVS--FVCELEGKTYSYTLTFSVRSQYEQL-------DTEQQELWTEFVDRGEL 405 D+ +++ + E++GKT+ Y++ Y+ + D E + ++V+ G L Sbjct: 370 RKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMGVL 429 Query: 406 ILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAI 465 + D ++ YI + +K ++ + P GL D+D N I Sbjct: 430 TVTDGAEVDYR----YILE-EAKAANKISPVSESPIDPFGATGL-SHDLADEDL-NPVTI 482 Query: 466 RQGFS-MNDYIKLLKSKLVENKLIHN-QKVMQWALNNTAVKIGQSGDYMY--TKKLEKDK 521 Q F+ M+D +K L++ + + H+ +M W + N K D + K+ ++K Sbjct: 483 VQNFANMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKNMPGNDDLVKPVKEQAENK 542 Query: 522 IDPTVALTMALEMAVSDE 539 ID VAL M + A+ E Sbjct: 543 IDGAVALIMTIGRAMLKE 560 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 65.9 bits (159), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 122/556 (21%), Positives = 224/556 (40%), Gaps = 57/556 (10%) Query: 16 IIINKYIRKTIQKQI-----RIHNKYIYRYDR--VTQAIEWIQDNFYLTTGNLMKIELLP 68 I +Y+ + Q+ I ++ YR+D+ +A ++IQ T G +L Sbjct: 24 ITACQYVIQACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKFIQ-LLPHTKGEWAFKRMLI 82 Query: 69 TQRWW--YELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGG 126 T W + + + V +KG ++ E++ + R +GKS++ A L ++G Sbjct: 83 TLEPWQLFIVCCAFGWV-QKGTKLRRFREVYTEIPRKNGKSAISAGVALYCFTCDNEFGA 141 Query: 127 ESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTND 186 E A QA VF R + + L E + L F+ + Sbjct: 142 EVYSGATTEKQAWEVFRPARLMCKRTPLLV---EAFGIEVNASNLNRPEDGARFEPLIGN 198 Query: 187 TLRAQGGNSSLNIFDEVHTYGED---ITESVNKGSRQKQDNWQSIYITSGGLKRDG-LYD 242 G + I DE H + D T G+R++ W IT+ G +G YD Sbjct: 199 P--GDGASPHCAIVDEYHEHPTDALYTTMLTGMGARRQPLMWA---ITTAGYNIEGPCYD 253 Query: 243 KLVERFKS-EEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELA 301 K E + N+ FG++Y ++ + D K A P IG V ++ L+ Sbjct: 254 KRREVIEMLNGSVPNNELFGVIYTVDEGDDWTDPKVLEKANPNIG-----VSVYRDFLLS 308 Query: 302 QGDPALQNKFLA-------FNMGLPMQDTAYY--FTPQDTKLTDFNLSVFNKNRTYVGID 352 Q A+ N A N+ + + TA++ + Q+ + L +F + D Sbjct: 309 QQQRAINNARHAGVFKTKHLNVWVAAR-TAFFNLVSWQNCEDKTLTLELFEGQPCVLAFD 367 Query: 353 LSLIGDLTAVS--FVCELEGKTYSYTLTFSVRSQYEQL-------DTEQQELWTEFVDRG 403 L+ D+ +++ F E++GKT+ Y++ Y+ + D E + ++V+ G Sbjct: 368 LARKLDMNSMARLFTREIDGKTHFYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMG 427 Query: 404 ELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQR 463 L + D ++ YI + +K +L + P GL D++ + Sbjct: 428 FLTVTDGAEVDYR----YILE-EAKAANKLNPVSESPIDPFGATGL-SHDLADENLNPVT 481 Query: 464 AIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQWALNNTAVKIGQSGDYMY--TKKLEKD 520 I+ +M+D +K L++ + + H+ +M W + N K D + K+ ++ Sbjct: 482 IIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWCIGNVVGKTIPGNDDVVKPIKEQAEN 541 Query: 521 KIDPTVALTMALEMAV 536 KID VAL MA+ A+ Sbjct: 542 KIDGAVALIMAVGRAM 557 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 61.2 bits (147), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 101/465 (21%), Positives = 188/465 (40%), Gaps = 43/465 (9%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 E + + R +GKS + A + +L ++G E A QA VF R + S Sbjct: 109 ESYWEVPRKNGKSVIAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPARLMVKRSPE 168 Query: 155 LRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY-GEDITES 213 L V + ++ S E S D G + S +I DE H + + E+ Sbjct: 169 LIVAADIEVNASNMNKPEDGSRFEPLIGNPGD-----GASPSCSIVDEYHEHDSAALYET 223 Query: 214 VNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-EEEFYNDRSFGLLYMLENHEQV 272 + G ++ I T+G +DK + + E +D FG ++ ++ + Sbjct: 224 MLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDW 283 Query: 273 KDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQ-----NKFLAFNMGLPMQDTAYYF 327 D + A P IG V ++Y +Q A++ N F ++ + A YF Sbjct: 284 TDPRVLAKANPNIG-----ISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYF 338 Query: 328 TPQDTKLTD---FNLSVFNKNRTYVGIDLSLIGDLTAVS--FVCELEGKTYSYTLTF--- 379 +D K + L F + +D++ DL +++ F +++G+ + + + Sbjct: 339 NLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFW 398 Query: 380 ----SVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRK 435 +VR+ + E+ + W V++G L+ D I+ D++ D + C ++ Sbjct: 399 VPEETVRNTENRRMAERYQAW---VNQGCLLETDGAEIDYRDILEEAKD--ANRLCPVQC 453 Query: 436 IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLVENKLIHN-QKV 493 DP L +E +G I Q ++ M+D +K L++ + + H+ + Sbjct: 454 TPLDPHGATNLSHQLE-----DEGLTPVTIVQNYTNMSDPMKELEAAITAGRFHHDGNPI 508 Query: 494 MQWALNNTAVK--IGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 M W ++N K G K+ +KID VAL MA+ A+ Sbjct: 509 MTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAIGRAM 553 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 57.8 bits (138), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 109/500 (21%), Positives = 212/500 (42%), Gaps = 42/500 (8%) Query: 66 LLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 L P Q++ + G+ VD+ + ++F+++ R +GKS L++ +L + G Sbjct: 65 LAPFQKFIIGSIYGW--VDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPA 122 Query: 126 GESLV--IAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQ 183 + + A D QA VF V+++ A + ++ K T+ L +T + Sbjct: 123 NKRQLYTAANDRKQAGIVFGMVKDRLRAL-MRKDPGIKRMVKITRDELVNLDDGSTIRSF 181 Query: 184 TNDTLRAQGGNSSLNIFDE-VHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD 242 + DT G + + DE + D+ E++ G I T+G +D Sbjct: 182 SRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAG-------FD 234 Query: 243 KLVERFKSEEEFYN---------DRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSG 293 V F+ + +R F + +N ++V D +W + PL+ DV Sbjct: 235 MNVPMFQQNYPYAKKVLSGEEKAERYFAFIAEQDNVQEVDDPNSWIKSNPLL-DVDTLHS 293 Query: 294 VIEEY---ELAQ--GDPALQNKFLA-FNMGLPMQDTAY--YFTPQDTKLTDFNLSVFNKN 345 I +Y +LAQ D +L K + FN+ + +Y + + +LTD Sbjct: 294 QISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKAAELTD--KPDIRGQ 351 Query: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTY--SYTLTFSVRSQYEQLDTEQQE-LWTEFVDR 402 R ++GID+ DL A+S++ EG + Y S ++ T++ + L E Sbjct: 352 RAWIGIDVGRTSDLFAISWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHGE 411 Query: 403 GELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQ 462 GE+ L++ I+ + + ++ DF + ++ I YDP ++ + IE+ + Sbjct: 412 GEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPYQFGPMLTAIEKNHPEW---PM 468 Query: 463 RAIRQG-FSMNDYIKLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKD 520 +RQG +++ K + ++ ++ H + ++MQ A N AV + + K + Sbjct: 469 VQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMN-AVLMSDNNGVRINKNKYAN 527 Query: 521 KIDPTVALTMALEMAVSDEV 540 KID A A +A +++ Sbjct: 528 KIDMIDATLDAYAIAFKEDL 547 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 57.4 bits (137), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 112/540 (20%), Positives = 219/540 (40%), Gaps = 72/540 (13%) Query: 11 NKENGIIINKYIRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQ 70 +K+NG +I K ++K + K I ++ Y+ + + ++I++ ++T N + +++P Sbjct: 11 DKDNGEMI-KLLKKKVAK---IEHEIDYK--KAEKIFDFIEE--FMTLPNNERFKIIPYH 62 Query: 71 RWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLV 130 + LM ++E + +GR + KS L L + L + + Sbjct: 63 KAVLTLMY---------CTPYQIDEFVVIVGRSNAKSILDVMIALIELFLFPKPNSVIAL 113 Query: 131 IAYDNTQA-----RH----------VFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTS 175 +A QA +H + ++ +NQ + + + +N I KS +G E + Sbjct: 114 MATKKDQAEKILMKHFRAMGNCQGTIINKFKNQFKLNKEQILVKDNSILKS--KGTEISI 171 Query: 176 FKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYI-TSGG 234 + + DTL GG L I DE + ++ ++ +G R+ N +++I T+ Sbjct: 172 YASN-----EDTL--DGGREQLVIIDEFGAFKKNPLITIRQGLRK---NKGTLFISTTNN 221 Query: 235 LKRDGLYDKLVERFKSEEEFYNDRSFG---LLYMLENHEQVKDKKNWTMALPLIGDVPKW 291 + R G YD +E +K E+ D F Y L+++++VKD + A P +G Sbjct: 222 VIRGGAYDDELESWK---EWVKDDDFSHWVFYYALDDYDEVKDSSKYIKANPALGYTLSL 278 Query: 292 SGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRTYVGI 351 + +++ A G+P K + L M D+ F+ Q F+ +G Sbjct: 279 EDIQKDFIGAIGNPVKMAKIITKRFNLSMTDSTTIFSKQLVDKCLVPPLDFSGRLVAIGS 338 Query: 352 DLSLIGDLTAVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTE 411 D S+ GD+ G Y + S ++ + + E ++ D Sbjct: 339 DFSVRGDVWGTVIGYRENGHYYFKAIPVMPESAEDKFKHLGETITHEGINNMTDEAWDAF 398 Query: 412 YINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQ---RAIRQG 468 +N +P + YDP K I++ F++ D + + ++ Sbjct: 399 MSAMNGSVPI-------------ALNYDP---NYAKNFIDK--FEQTYDIEFYNKVMQNS 440 Query: 469 FSMNDYIKLLKSKLVENKLIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVAL 528 F +++ ++ + + E K+ + K++ L N KI G KK DKID AL Sbjct: 441 FKLSNTLEATQKLMEEGKIHFDSKLLAVHLMNAETKINDFGLMRIIKKGYTDKIDLADAL 500 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 57.0 bits (136), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 104/479 (21%), Positives = 187/479 (39%), Gaps = 67/479 (13%) Query: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLR 156 F+ + R + KS L A + G E + + QA+ VF++ + AS L+ Sbjct: 107 FIQVARKNQKSQLEAGMAGYEIGAKGYNAAEVYTLGVERDQAKIVFEEW--ELMASKPLK 164 Query: 157 VYNENKIFKSTKQGLEF---TSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDITES 213 K FK T++ ++ SF K+ T G N + + DE H + Sbjct: 165 -----KRFKFTQKVIKHKKSNSFIKHLSKKAGKT--GDGKNPQMAVIDEYHAHPNSKMYD 217 Query: 214 VNKGSRQKQDNWQSIYITSGGLKRD---GLYDKLVERFKSEEEFYNDRSFGLLYMLENHE 270 V K + + IT+ G + Y+ L + F N++ F ++ LE+ + Sbjct: 218 VMKSGMMARTEPLLVIITTAGEDYEETACYYEYLDCCSILDGTFENEKYFVMICELEDED 277 Query: 271 QVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPAL-QNKFLAFNMG-------LPMQD 322 D+K W A P V+ YE +G ++ QN LA N ++ Sbjct: 278 DPFDEKAWIKANP----------VLCTYE--EGIESMRQNANLAKNTSNEEKRIEFLTKN 325 Query: 323 TAYYFTPQDTKLTD----------FNLSVFNKNRTYVGIDLSLIGDLTAVSFVCE----- 367 Y + K D L F + Y+G+DLS GDLT+++F Sbjct: 326 CNIYVAAGEKKYVDVEFWKACKENITLEKFRGHDCYIGMDLSKSGDLTSIAFEFPYLDEG 385 Query: 368 -----LEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYI 422 L GK++ + V + + D +W+ ++G LI + + DL + Sbjct: 386 IRKYALFGKSF---IPAEVVKEKMKTDNVPYNIWSS-KEKGWLIKTEANEGQIVDLWAIL 441 Query: 423 NDFRS---KTGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLK 479 N S + + ++ YDP +L +ER ++ Q + + ++ L+K Sbjct: 442 NTIESIVKEYELNVIEVSYDPHGAAMLVSELERRDYNCVECGQSCAKLNEATVNFRDLMK 501 Query: 480 SKLVENKLIHNQ-KVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEMAVS 537 K +++H++ +M W + N G+ +KK +IDP + A A++ Sbjct: 502 IK----QIVHDENNLMTWCVQNAEKDTNSFGEIKISKKSRFKRIDPLASCIFAHNRAMT 556 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 53.9 bits (128), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 93/449 (20%), Positives = 192/449 (42%), Gaps = 27/449 (6%) Query: 97 FLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEA--S 152 +++ R +GK+ L+A +L + G + A D TQA+ +D + Q + + Sbjct: 114 MISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFCTANDRTQAKIAWDMAKKQLSSLRA 173 Query: 153 DTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDE-VHTYGEDIT 211 + V KI + + L S+ + + DT G + + DE + ++ Sbjct: 174 KDVDVRKATKIVRDELKNLHDESY---IRALSRDTGAVDGFEPYVGVLDEFAASKTNEML 230 Query: 212 ESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS---EEEFYNDRSFGLLYMLEN 268 E + G Q DN + I++ G+ + + + + + E ++ FG + +N Sbjct: 231 ELLESGQGQ-LDNPFILIISTAGMDLNVPMHTIEYPYITKILDGEITDEGYFGYVAEQDN 289 Query: 269 HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQ----NKFLAFNMGLPMQDT- 323 E++KD+ NW + P++ +V + +Y + +L+ NK L N + Q + Sbjct: 290 EEEIKDESNWIKSNPIL-EVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSE 348 Query: 324 AYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSYTLTFSVRS 383 Y Q +L + K R ++G+D+ + DL A+S V ++ Y + +F V + Sbjct: 349 ESYIDKQSWELAQIDKPDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYLDSFSF-VAT 407 Query: 384 QYEQLDTEQQE--LWTEFVDRG--ELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYD 439 +Y E+++ ++ +G E+ L++ I+ ++ I + + I +D Sbjct: 408 KYGLTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFD 467 Query: 440 PARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQWAL 498 P ++ L +IE+ + + +N K + L + K+ H+ ++ A+ Sbjct: 468 PYQFGTLLTMIEKRH--PEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAV 525 Query: 499 NNTAVKIGQSGDYMYTKKLEKDKIDPTVA 527 NN +K +G K +KIDP A Sbjct: 526 NNAYIKTDNNG-MRIDKNKNSNKIDPLDA 553 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 53.5 bits (127), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 98/465 (21%), Positives = 185/465 (39%), Gaps = 43/465 (9%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 E + + R +GKS + A + ++G E A QA VF R + S Sbjct: 110 ESYWEVPRKNGKSVIAAGVGIAMFTADDEFGAEVYCGATTERQAWEVFRPARLMVKRSPL 169 Query: 155 LRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGEDIT-ES 213 L E+ + Q L + F+ + G + S I DE H + + E+ Sbjct: 170 L---IEHLGIEVNAQALNRPEDGSRFEPIIGNP--GDGASPSCAIEDEYHEHDTNAQYET 224 Query: 214 VNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-EEEFYNDRSFGLLYMLENHEQV 272 + G ++ + T+G YDK + + E +D FG ++ ++ + Sbjct: 225 MLTGMGARRQPLMFVITTAGANIEGPCYDKRRQVIEMLEGTVPDDELFGWIWTIDEDDDW 284 Query: 273 KDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQ-----NKFLAFNMGLPMQDTAYYF 327 D + A P IG V +EY +Q A++ N F ++ + A YF Sbjct: 285 TDPRVLAKANPNIG-----ISVYQEYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYF 339 Query: 328 TPQDTKLTD---FNLSVFNKNRTYVGIDLSLIGDLTAVS--FVCELEGKTYSYTLTF--- 379 +D K + +L F + +D++ DL +++ F +++G+ + + + Sbjct: 340 NLEDWKACEDRSLSLEQFEGQDCVLALDMARKLDLNSMARLFWRDIDGRRHYFCVAPRFW 399 Query: 380 ----SVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRK 435 +VR+ + E+ + W V+ G LI D I+ +++ + + C ++ Sbjct: 400 VPEDTVRNTENRRMAERYQAW---VNHGFLIETDGAEIDYREILEEAKEANRR--CPVQC 454 Query: 436 IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLVENKLIHN-QKV 493 DP L + +G I Q ++ M+D +K L++ + + H+ + Sbjct: 455 TPLDPHGATNLS-----HQLADEGLTPVTIVQNYTNMSDPMKELEAAITSRRFHHDGNPI 509 Query: 494 MQWALNNTAVK--IGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 M W ++N K G K+ +KID VAL MA+ A+ Sbjct: 510 MTWCISNVIGKNLPGNDDVVRPVKQGNDNKIDGAVALIMAVGRAM 554 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 52.8 bits (125), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 70/327 (21%), Positives = 135/327 (41%), Gaps = 46/327 (14%) Query: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLR 156 ++ L R + KS +A + ++ I Q + + Q+ V+ + Q + L+ Sbjct: 96 YIQLARKNAKSQFLAL-IASYEIFPTQEKHRVFIAGWSREQSDEVYQAILEQLHHAPILK 154 Query: 157 VYNENKIFKSTKQGLEFTSFKTTFKK-QTNDTLR---------AQGGNSSLNIFDEVHTY 206 ++TS KK +TN ++ G N SL I DE H + Sbjct: 155 G--------------KYTSANGRVKKYKTNSIIQPLSREARKLGDGKNPSLGIVDEYHAH 200 Query: 207 -GEDITESVNKGSRQKQDNWQSIYITSG-GLKRDGL--YDKLVERFKSEEEFYNDRSFGL 262 +I + ++ G ++ ++ T+G ++R Y + + + ND F + Sbjct: 201 ETSEIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVM 260 Query: 263 LYMLENHEQVKDKKNWTMALPLIGDVPK-WSGVIEEYELAQGDPALQNKFLAFNMG--LP 319 + L+ + +KD+ NW A P++ P+ + ++A P FL NM + Sbjct: 261 ICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKVALEVPEKMRSFLTKNMNRWVD 320 Query: 320 MQDTAYYFTPQDTKLTDF-----NLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYS 374 +D Y K+T + + Y+G+DLS+ DLT+V +V +G Y Sbjct: 321 QKDNGY------MKMTKWRACSGEIPDLQGLPVYLGLDLSMTTDLTSVGYVAVQDGFFYV 374 Query: 375 YTLTFSVRSQY-EQLDTEQ--QELWTE 398 +F ++ E++ T++ +LW E Sbjct: 375 GQHSFMPDARANEKMATDKVPYDLWRE 401 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 50.4 bits (119), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 95/465 (20%), Positives = 186/465 (40%), Gaps = 43/465 (9%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 E + + R +GKS A + +L ++G E A QA VF + + S Sbjct: 109 ESYWEVPRKNGKSVTAAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPM 168 Query: 155 LRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY-GEDITES 213 L ++ + + + + F+ + G + S I DE H + + E+ Sbjct: 169 L---IDSAGIEVNASNMNKPADGSRFEPIIGNP--GDGASPSCAIVDEYHEHDSAALYET 223 Query: 214 VNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-EEEFYNDRSFGLLYMLENHEQV 272 + G ++ I T+G +DK + + E +D FG ++ ++ + Sbjct: 224 MLTGMGARRQPLMFIITTAGANIEGPCFDKRRQVIEMLEGTVPDDELFGWIWTIDEGDDW 283 Query: 273 KDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQ-----NKFLAFNMGLPMQDTAYYF 327 D + A P IG V ++Y +Q A++ N F ++ + A YF Sbjct: 284 TDPRVLAKANPNIG-----ISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYF 338 Query: 328 TPQDTKLTD---FNLSVFNKNRTYVGIDLSLIGDLTAVS--FVCELEGKTYSYTLTF--- 379 +D K + L F + +D++ DL +++ F +++G+ + + + Sbjct: 339 NLEDWKSCEDRSLTLEQFEGQDCVLALDMARKLDLNSMARLFWHDIDGRRHYFCVAPRFW 398 Query: 380 ----SVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRK 435 +VR+ + E+ + W V++G L+ D I+ D++ D + C ++ Sbjct: 399 VPEDTVRNTENRRMAERYQAW---VNQGCLLETDGAEIDYRDILEEAKD--ANRLCPVQC 453 Query: 436 IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFS-MNDYIKLLKSKLVENKLIHN-QKV 493 DP L + +G I Q ++ M+D +K L++ + + H+ + Sbjct: 454 TPLDPHGATNLS-----HQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPI 508 Query: 494 MQWALNNTAVK--IGQSGDYMYTKKLEKDKIDPTVALTMALEMAV 536 M W ++N K G K+ +KID VAL MA+ A+ Sbjct: 509 MTWCVSNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAM 553 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 48.9 bits (115), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 81/391 (20%), Positives = 169/391 (43%), Gaps = 26/391 (6%) Query: 66 LLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 L P Q++ +LG+ + KG ++ E F+ + R +GK+ L+A +L Q G Sbjct: 82 LEPWQKFIIYNLLGFYL---KGTKIRRFKEAFIFIPRKNGKTRLIAALAWALALLERQSG 138 Query: 126 GESLVIAYDNTQARHVFDQVR---NQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKK 182 + + + Q+ F+ + Q R+ N N+ +++ G EF+ + Sbjct: 139 SKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQ--ENSISG-EFSDGSIYIRA 195 Query: 183 QTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL-Y 241 + + N ++ I DE+H Y ++ K + + N I IT+ G Y Sbjct: 196 LAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIGITTAGDDMTSFCY 255 Query: 242 DKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMAL------PLIGDVPKWSGVI 295 +L K +E D ++ +++ + E + ++T + P G + ++ Sbjct: 256 QRLQYCKKILDETVTDEAY-FVFICKADEDENGEVDYTNPIEHEKANPNYGVTIRPDDIM 314 Query: 296 EEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTD--FNLSVFNKNRT----YV 349 + AQ DP + FLA ++ + YF + K +D ++ ++ + + Sbjct: 315 NDALQAQNDPQQRKDFLAKSLNIYTSPMKAYFNIDEFKKSDRKYDWTIEQLAKLGIDWFG 374 Query: 350 GIDLSLIGDLTAVSFVCELEGKTYSYTLT-FSVRSQYEQLDTEQQELWTEFVDRGELILL 408 G DLS + DLTA + G + T F + + + + + L+ + D G L + Sbjct: 375 GADLSKLHDLTAAALYGNYNGVDIAITHAWFPIVAATRKAEEDNIPLFG-WRDDGWLTMT 433 Query: 409 DTEYINVNDLIPYINDFRSKTGCRLRKIGYD 439 +T +N +D++ + R+K G +++++G+D Sbjct: 434 NTPTVNFSDVVKWFETMRAK-GFKIKQVGFD 463 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 48.9 bits (115), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 81/391 (20%), Positives = 169/391 (43%), Gaps = 26/391 (6%) Query: 66 LLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 L P Q++ +LG+ + KG ++ E F+ + R +GK+ L+A +L Q G Sbjct: 82 LEPWQKFIIYNLLGFYL---KGTKIRRFKEAFIFIPRKNGKTRLIAALAWALALLERQSG 138 Query: 126 GESLVIAYDNTQARHVFDQVR---NQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKK 182 + + + Q+ F+ + Q R+ N N+ +++ G EF+ + Sbjct: 139 SKIYITSAALQQSLQSFEFILFNLRQMGEEQNFRILNNNQ--ENSISG-EFSDGSIYIRA 195 Query: 183 QTNDTLRAQGGNSSLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGL-Y 241 + + N ++ I DE+H Y ++ K + + N I IT+ G Y Sbjct: 196 LAANPDKQDSLNCNVGIADEMHAYKTPKQYNIIKEAMKAYTNKLMIGITTAGDDMTSFCY 255 Query: 242 DKLVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMAL------PLIGDVPKWSGVI 295 +L K +E D ++ +++ + E + ++T + P G + ++ Sbjct: 256 QRLQYCKKILDETVTDEAY-FVFICKADEDENGEVDYTNPIEHEKANPNYGVTIRPDDIM 314 Query: 296 EEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTD--FNLSVFNKNRT----YV 349 + AQ DP + FLA ++ + YF + K +D ++ ++ + + Sbjct: 315 NDALQAQNDPQQRKDFLAKSLNIYTSPMKAYFNIDEFKKSDRKYDWTIEQLAKLGIDWFG 374 Query: 350 GIDLSLIGDLTAVSFVCELEGKTYSYTLT-FSVRSQYEQLDTEQQELWTEFVDRGELILL 408 G DLS + DLTA + G + T F + + + + + L+ + D G L + Sbjct: 375 GADLSKLHDLTAAALYGNYNGVDIAITHAWFPIVAATRKAEEDNIPLFG-WRDDGWLTMT 433 Query: 409 DTEYINVNDLIPYINDFRSKTGCRLRKIGYD 439 +T +N +D++ + R+K G +++++G+D Sbjct: 434 NTPTVNFSDVVKWFETMRAK-GFKIKQVGFD 463 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 43.9 bits (102), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 111/540 (20%), Positives = 223/540 (41%), Gaps = 74/540 (13%) Query: 36 YIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNE 95 YIY ++ + +E+ +T+G E P Q++ + G+ + KG++ Sbjct: 56 YIYDSEQAKKIVEFSTLLKDVTSGE--PFEASPYQKFILASVQGWRNPETKGMRFKT--- 110 Query: 96 IFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVI-AYDNTQARHVFDQVR-NQTEASD 153 IF+++ R +GK+ ++AT L + G L + + D ++F+ +R N + D Sbjct: 111 IFISMARTNGKTQVLATYALYNFLFGSPKINRQLAVSSIDIAHTHNLFNYMRFNWIQLKD 170 Query: 154 TLRVYNENKIFKSTKQGLEF--TSFKTTFKKQTN--DTLRAQGGNS-----SLNIFDEVH 204 +FK + L+ S KKQ+ L AQG + + I DE H Sbjct: 171 G--------VFKKLAKALDINDNSQVMEIKKQSAVMKKLSAQGSPADSDHYTTGIVDEYH 222 Query: 205 TYGEDITESVNKGSRQKQDN--WQSIYITSGGLKRDGL----YDKLVERFKSEEEFYNDR 258 +G+ + ++ + +N Q +I++ G+ Y + + +S + +++ Sbjct: 223 LFGQKQRDFISSMTSGMVNNPLAQMFFISTAGVDPTVPMFEDYKRYSKMLESGDWSSSEK 282 Query: 259 SFGLLYMLENHEQVKDKKNWTMALPL--IGDVPK--WSGVIEEYELAQGDPALQNKFLAF 314 L++ ++ ++ + W + PL I + K G+I E + +++ F Sbjct: 283 DLVLIWEQDSEDEAYLIETWPKSNPLMEIESMRKNLTEGMITERDSLNSQGRIRD-FYVK 341 Query: 315 NMGLPMQDTAYYFTP----QDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEG 370 NM L + P QD + +F+ F ++ ++G D S D T+++FV G Sbjct: 342 NMNLWQNAKKNAYLPLDLVQDAIVDEFDY--FGRD-VFIGFDYSQTNDDTSLAFVFPHSG 398 Query: 371 KTY----------SYTLTFSVRSQYEQLDTEQ-QELWTEFVDRGELILLDTEYINVNDLI 419 + + + + Q + +D QE + R L+D + ++ Sbjct: 399 SKFHLYQHSWIPIAKAGSIEAKEQRDNIDYRAVQEKGFATITRDRFGLIDED-----EVF 453 Query: 420 PYINDFRSKTGCRLRKIGYDP----ARYEILKGLIERYFFDKDGDNQRAIRQGF-SMNDY 474 ++ +F K R++ I YD L + E Y +RQG S+N+ Sbjct: 454 NWMLNFIEKNELRVKAILYDQWGTGNFIRRLDEVKEEYLL-------IPVRQGIKSLNEP 506 Query: 475 IKLLKSKLVENK--LIHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMAL 532 K L+S +++ ++ +Q ++Q +N AV + + K + KID A+ AL Sbjct: 507 TKFLQSSFIKHNITMLDDQALIQGLVN--AVTVSDNNGIKLDKNVNSQKIDAADAIVNAL 564 >gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453562;genbank:gi:84662597;genbank:GeneID :5142486 Length = 561 Score = 43.9 bits (102), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 4/140 (2%) Query: 398 EFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRK--IGYDPARYEILKGLIERYFF 455 +F GEL ++D +V +L + K+G K IG D A + ++ + Sbjct: 405 DFEKAGELTIVDLPGQDVQELCDIVLKLE-KSGLLPEKNAIGVDQAGISAIVDMLTGPEY 463 Query: 456 DKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYT 514 D A+ QG+ ++ IK + L N LIH +Q +M W + N V++ S Y Sbjct: 464 GIDIGRILAVPQGYRLSGAIKTCERALAGNTLIHADQDIMTWNIGNLKVELKGSALYSTK 523 Query: 515 KKLEKDKIDPTVALTMALEM 534 K K+D AL A+ + Sbjct: 524 AAAGKAKVDLAHALFNAISL 543 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 18/185 (9%) Query: 91 NLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF----DQVR 146 NL+ E+FL + + S KSSL + +L +I+G + ++I+ A + F D VR Sbjct: 80 NLLKELFLLVPKKSAKSSLASGIMLTALIIGWRKSASYIIISPTIEIAGNSFKPAADSVR 139 Query: 147 NQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY 206 E S L+V + + G DT+ G +S+ + DE+H Sbjct: 140 ADPELSKLLQVSAHTRTITNRVTGAVLKVLAA-----AEDTV--TGSKASVLLIDELHLM 192 Query: 207 -----GEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEE--FYNDRS 259 G + G + + + T G++ ++ F++ + + R Sbjct: 193 GLKENGSSMLREAAGGLAARPEGFVLKLTTQSSQAPAGVFKSDLDLFRNVRDGIVVDKRR 252 Query: 260 FGLLY 264 FGLLY Sbjct: 253 FGLLY 257 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 43.9 bits (102), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 97/234 (41%), Gaps = 25/234 (10%) Query: 22 IRKTIQKQIRIHNKYIYRYDRVTQAIEWIQDNFYLTTGNLM--KIELLPTQRWWYELMLG 79 I I + I + RV + WI++ YLT G+ LLP QR L+ Sbjct: 10 IDPVIARHIPADAPFPSEGYRVAK---WIEEFCYLT-GSFAGQPFRLLPWQR--TLLIDA 63 Query: 80 YDMV-DEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG-GQYGGESLVIAYDNTQ 137 Y++ D G + + + R +GKS++ A +L +I G + + A D Q Sbjct: 64 YELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHLIADRGDAQRQVIAAANDRNQ 123 Query: 138 ARHVFDQVRNQTEASDTL-RVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSS 196 AR VFD + AS L V N + K T++ + D R QG N + Sbjct: 124 ARMVFDSAKQMVNASPKLAAVCNVQRDVIRYKD--------NTYRVVSADAGRQQGLNPA 175 Query: 197 LNIFDE-VHTYGEDITESVNKGSRQKQDNWQSIY--ITSGGLKRDGLYDKLVER 247 DE + D+ +++ GS + Q ++ I++ G DG + L E+ Sbjct: 176 AVSLDEYAFSKSSDLFDALTLGSAARN---QPMFLIISTAGPDPDGPFAALCEQ 226 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 43.5 bits (101), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 89/450 (19%), Positives = 173/450 (38%), Gaps = 19/450 (4%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 E + + R +GKS+ +A R + G+ G E A QA VF + Sbjct: 105 EAYEEIPRKNGKSARLAARGIYLFAADGESGAEVYSGATTEKQAFEVFRPAWMMAHKLEN 164 Query: 155 LRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTYGED-ITES 213 LR ++ + K + K +T G + + DE H + D + ++ Sbjct: 165 LRNRFGIELSGNQKNPGPMFVMEDMSKFETVIGNPGDGASPHAALVDEYHEHDTDALVDT 224 Query: 214 VNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS-EEEFYNDRSFGLLYMLENHEQV 272 + G ++ SI T+G ++K + + E + ++ FG++Y ++ + Sbjct: 225 MQTGMGAREQPLLSIITTAGSNLGGPCHEKRRDVIRILEGQTIDETIFGIIYTIDEDDPW 284 Query: 273 KDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLA--FNMGLPMQDTAYYFTPQ 330 D + A P G ++ + + A+ + QN F N + + Sbjct: 285 DDPASLIKANPNYGVSVFPDFLLAQLQQAKRSASKQNAFRTKHLNQWVGARTVWMNMLAW 344 Query: 331 DTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYSYTLTFSVRSQYEQLDT 390 + DF ++ R ++ +DL+ D+ A+ + E G+ Y ++ + E+ + Sbjct: 345 QRQKRDFTIADMAGCRCWMALDLASKKDVAALVMLFEKAGQFYCIPRFYAPEAAAEENEK 404 Query: 391 EQQELWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYDPARYEILKGLI 450 Q F G L+L + + I D + L+ +D + L + Sbjct: 405 YQN-----FALEGHLVLTPGSMTDYAFIEADILDLAKQID--LQDAAFDDWQANYLITRL 457 Query: 451 ERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIHN-QKVMQWALNNTAVKIGQSG 509 NQ +M+D +K ++++++ L H+ VM W + N A KI Sbjct: 458 SNTSIPVVDFNQTVK----NMSDPMKEVEARVIARTLWHDGNPVMTWMMGNVAAKIDAKE 513 Query: 510 DYMYTKKLEKD---KIDPTVALTMALEMAV 536 + K+ + D KID V L MA+ A+ Sbjct: 514 NIYPRKENDNDPNCKIDGPVTLIMAMGRAL 543 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 43.1 bits (100), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 5/104 (4%) Query: 433 LRKIGYDPARY-EILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIH-N 490 L IG DP+ +IL L E D I QG+ + IK + KL E L+H Sbjct: 436 LEHIGIDPSGVGQILDSLAEAGIPD---GIVVGISQGWKLGGAIKTTERKLAEGVLVHGG 492 Query: 491 QKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 Q +M W + N V+ + + + + KIDP +AL A+ + Sbjct: 493 QPLMAWCVGNARVEPKGNAILITKQASGRGKIDPLMALFNAVSL 536 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 22/208 (10%) Query: 48 EWIQDNFYLTTGNLM--KIELLPTQRWWYELML-GYDMV-DEKGIQVNLVNEIFLNLGRG 103 +WI++ YLT G+ LLP QR EL++ Y + D G + + + R Sbjct: 30 KWIEEFCYLT-GSFAGQPFRLLPWQR---ELLIDAYVLTQDTFGRWRRKHRTVVVCVARK 85 Query: 104 SGKSSLMATRVLNWMILG-GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENK 162 +GKS++ A +L +I G + + A D QAR VFD + AS L Sbjct: 86 NGKSTIAAAIMLYHLIADRGDAQRQIIAAANDRNQARMVFDSAKQMVNASPKLAA----- 140 Query: 163 IFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDE-VHTYGEDITESVNKGSRQK 221 + + + + T++ + D R QG N + DE + D+ +++ GS + Sbjct: 141 VCDVQRDVIRYKD--NTYRVVSADAGRQQGLNPAAVSLDEYAFSKHSDLFDALTLGSAAR 198 Query: 222 QDNWQSIY--ITSGGLKRDGLYDKLVER 247 Q ++ I++ G DG + L E+ Sbjct: 199 N---QPMFLIISTAGPDPDGPFAALCEQ 223 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 4/140 (2%) Query: 398 EFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRK--IGYDPARYEILKGLIERYFF 455 +F GEL ++D +V +L + K+G K IG D A + ++ + Sbjct: 413 DFEKAGELTIVDLPGQDVQELCDIVLKLE-KSGLLPEKNAIGVDQAGISAIVDMLTGPEY 471 Query: 456 DKDGDNQRAIRQGFSMNDYIKLLKSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYT 514 D A+ QG+ ++ IK + L N L H +Q +M W ++N V++ S Y Sbjct: 472 GIDIGRILAVPQGYRLSGAIKTCERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTK 531 Query: 515 KKLEKDKIDPTVALTMALEM 534 K K+D AL A+ + Sbjct: 532 AAAGKAKVDLAHALFNAISL 551 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 41.6 bits (96), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 102/477 (21%), Positives = 185/477 (38%), Gaps = 46/477 (9%) Query: 91 NLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF----DQVR 146 NL+ E F + + S KSS+ + +L +I+G + L++A A+ F D VR Sbjct: 80 NLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLIVAPTIEVAQASFKPASDSVR 139 Query: 147 NQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEVHTY 206 + S + + + + G K D G +S+ + DE H Sbjct: 140 ADPQLSKLINISTHTRTLTNRVSG-------AVLKVIAADENSVTGSKASVLLVDECHRL 192 Query: 207 G-----EDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEE--FYNDRS 259 G + G + + + T G++ ++ F+S + + R Sbjct: 193 GTKENASSMLREAAGGLAARPEGFIIKLSTQASEPPAGVFKDDLDLFRSIRDGIVVDKRR 252 Query: 260 FGLLYMLENHEQVKDKKNWTMAL-------PLIGDVPKWSGVIEEYELAQ--GDPALQN- 309 FG+LY H + + M L P +G + + + YE A+ G L + Sbjct: 253 FGVLY---EHPKAWLEDGRAMTLEGIKLVNPSLGYSVDMNYLEDAYERAKNIGGGELLDY 309 Query: 310 --KFLAFNMGLPMQD-----TAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAV 362 K +G+ +++ ++ D LT + + VGID + DL + Sbjct: 310 LAKHANVQIGMNLRNDRFAGADFWAQNADPTLT-LDTLIERCEVAVVGIDGGGLDDLLGL 368 Query: 363 SFV--CELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTEYINVNDLIP 420 S V C+ K S++ + E++ L +F GEL ++D +V +L Sbjct: 369 SVVGRCKKTRKWLSWSYGWCHTIALERVKQNASRL-RDFEKAGELTIVDLPGQDVQELCE 427 Query: 421 YINDFRSKTGCRLRK--IGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLL 478 + K+G + IG D A + ++ + D A+ QG+ ++ IK Sbjct: 428 IVLKLE-KSGLLPERNAIGVDQAGISAIVDMLTGPEYGIDIGRILAVPQGYRLSGAIKTC 486 Query: 479 KSKLVENKLIH-NQKVMQWALNNTAVKIGQSGDYMYTKKLEKDKIDPTVALTMALEM 534 + L N L H +Q +M W ++N V++ S Y K K+D AL A+ + Sbjct: 487 ERALAGNTLTHADQDIMDWNISNLKVELKGSALYSTKAAAGKAKVDLAHALFNAISL 543 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 40.4 bits (93), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 72/346 (20%), Positives = 121/346 (34%), Gaps = 48/346 (13%) Query: 84 DEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVFD 143 DE G ++ L R +GK+ L+A +L ++ G+ GE +A D QA FD Sbjct: 70 DEFGCYKRRYEIAWIELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFD 129 Query: 144 QVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNSSLNIFDEV 203 + S L + +K + SF D A G N S DE+ Sbjct: 130 VAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSFYDVI---AADAKSALGSNPSGCGADEI 186 Query: 204 HTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLVERFKSEEE 253 + + + + G+R Q + + S D GL + +ER E+ Sbjct: 187 LAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREMERVM-EDP 240 Query: 254 FYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKF 311 D +YM E +++ W A P +G W + ++ A+ +P + F Sbjct: 241 DNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAF 300 Query: 312 LAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSLIGDLTAVS 363 F + T + P + K T F F + G+DL+ DL ++ Sbjct: 301 RQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAARRDLCSIC 360 Query: 364 FVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 ++ + Q D LW ++ L LD Sbjct: 361 YL-------------------FPQSDGSVDLLWRHWIPESALAKLD 387 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 93/462 (20%), Positives = 173/462 (37%), Gaps = 52/462 (11%) Query: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVI--AYDNTQARHVFDQVRNQTEASDT 154 L++ R +GK+ L+A +L ++ G + + ++ A QA VF+ + Sbjct: 51 ILSIARKNGKTGLIAGILLAHLV-GPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPK 109 Query: 155 LRVYNENKIFKSTKQGLEFTSFKTT--FKKQTNDTLRAQGGNSSLNIFDE---VHTYGED 209 L+ +I T G + +K + + G + L I DE V +D Sbjct: 110 LQ-----EIVHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDD 164 Query: 210 ITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEEFYNDRSFGLLYMLENH 269 +++ ++ + T D L + + KS++ +Y Sbjct: 165 FIDAITTAQGAHENPLLIVISTQAANDADLLSIWIDDAVKSKDPHI----VCHVYEAPKD 220 Query: 270 EQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP 329 + +++W A P +G + + E A P+ +N F N+ + + + + Sbjct: 221 ADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFISR 280 Query: 330 QDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYS-YTLTFSVRSQYEQL 388 +L + + + Y G+DLS DLTA+ E + + + ++ + E+ Sbjct: 281 SVWELCG-EMPINTPRKWYAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQKTLEER 339 Query: 389 DTEQQELWTEFVDRGELILLDTEYIN----VNDLIPYINDFRSKTGCRLRKIGYDPARYE 444 + + +V G L ++ V D+ I DF L I +D R+ Sbjct: 340 TKTDRAPYDVWVREGLLRTTPGASVDYSFVVADIAEIIGDF------DLTSIAFD--RWR 391 Query: 445 ILKGLIERYFFDKDGD------NQRAIRQGF-SMNDYIKLLKSKLVENKLIHNQKVMQWA 497 I + F KD D QGF M + L+S ++ ++ H M Sbjct: 392 IDQ-------FRKDADAIGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHG---MHPV 441 Query: 498 LNNTAVKIGQSGDYMYTKKLEKDK----IDPTVALTMALEMA 535 L AV D +KL+K K ID VA+TM++ A Sbjct: 442 LTMCAVNAVVVKDAAGNRKLDKSKATGRIDGMVAMTMSVGAA 483 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 79/395 (20%), Positives = 162/395 (41%), Gaps = 50/395 (12%) Query: 85 EKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF-- 142 EKG + NE + L R GK++ A+ I+ G ++ ++A Q + F Sbjct: 98 EKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGF 157 Query: 143 -----DQVRNQTEASDTLRVYNENKIFKSTKQGLEF-TSFKTTFK-KQTNDTLRAQGGNS 195 +++RN + +R+ + N + ++F + F +D L + GN+ Sbjct: 158 LTYNVEKIRNDVK---KMRIRDNN---QEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNA 211 Query: 196 SLNIFDEVHTYGEDITES--VNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS--- 250 I DE+H++ + + + K S++ N + I++ G +G + V K Sbjct: 212 L--ILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQRVTTLKKVLS 269 Query: 251 ---EEEFYNDRSFGLLYMLENHEQ-------------VKDKKNWTMALPLIGDVPKWSGV 294 +++ Y D F L E E+ + D + P + + Sbjct: 270 GTIKDKAY-DSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLASVTPSLDVTVTLDDL 328 Query: 295 IEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRT------Y 348 I E A +P L+ +FL ++ + YF + + ++ S + + Y Sbjct: 329 ITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSNKQHSWTMEELSKLPITWY 388 Query: 349 VGIDLSLIGDLTAVSFVC--ELEGKTYSYTLTFSVRSQYEQLDTEQQE--LWTEFVDRGE 404 G DLS + DLTA + E +GK+ +T + + ++ Q++ E+ + G Sbjct: 389 GGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGW 448 Query: 405 LILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYD 439 L +TE + +D++ + + R K G +++ + +D Sbjct: 449 ATLSNTETVLYDDIVKWFMEMRDK-GFKIKSVHFD 482 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 111/533 (20%), Positives = 218/533 (40%), Gaps = 53/533 (9%) Query: 36 YIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRWWYELMLGYDMVDEKGIQVNLVNE 95 Y Y D + + + + + TG K L+ Q + + LM G+ D +++ Sbjct: 70 YHYDVDEANRLLRFAKICPNVDTGEPTK--LMEWQEFTFALMFGWRDKDNNKRFTRVIDS 127 Query: 96 IFLNLGRGSGKSSLMATRVLNWMILG--GQYGGESLVIAYDNTQARHVFDQVRNQTEASD 153 + RG GK+ MA V ++ G + LV + + Q +F V + Sbjct: 128 V----ARGQGKTYQMAILVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYV------AS 177 Query: 154 TLRVYNENKIFKSTKQGLE-FTSFKTTFKKQTNDTLRA----QGGNSSLN----IFDEVH 204 +R + + FKS + + K+ N+ LRA G S + IFDE+ Sbjct: 178 MMRKIIQIEPFKSYANEVNLYIQSDQIIMKKNNNVLRAISLEAGQYDSYHFRTAIFDEIG 237 Query: 205 TYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDK----LVERFKSEEEFYNDRSF 260 T S + K N Q I I++ + + +++ + + + D Sbjct: 238 EVKSRETVSKIISGQVKVSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYL 297 Query: 261 GLLYMLENHEQVKDKKNWTMALPLIGDVPK-----WSGVIE--EYELAQGDPALQNKFLA 313 GL++ ++ ++ + W + PL+ D+P G+ + + +L G+ + F Sbjct: 298 GLIWSQDSLDETYKPETWVKSNPLL-DLPDQRDNLLKGLTDKRDSDLLTGNIS---DFQT 353 Query: 314 FNMGLPM-QDTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCEL-EGK 371 N+ L + Q T Y +D + +N + + ++G D S+ D TA+SFV +GK Sbjct: 354 KNLNLWLKQSTDSYLNLKDVEDAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPYDDGK 413 Query: 372 TYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLDTE---YINVNDLIPYINDFRSK 428 + +F Q ++ ++++ + + E + IN + ++ ++ + Sbjct: 414 FHIEQHSFIPFQQAGSIEAKEKQDGITYRNYPEYCTITAHPQGIINPEQIYKWLLNYVEQ 473 Query: 429 TGCRLRKIGYDPARYEILKGLIERYFFDKDGDNQRAIRQGFSMNDYIKLLKSKLVENKL- 487 +++ GYD +K + E + D ++ ++ + K L+ V +K+ Sbjct: 474 HQLKVKFFGYDRFGSYQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVT 533 Query: 488 IHNQKVMQWALNNTAVKIGQSGDYMYTKKLEKDK----IDPTVALTMALEMAV 536 I N VMQ AL N +K + G + ++KDK ID A+ AL A+ Sbjct: 534 IPNDPVMQKALLNAVIKADKIGIH-----VDKDKATLQIDVVDAIIDALYQAM 581 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 92/462 (19%), Positives = 173/462 (37%), Gaps = 52/462 (11%) Query: 97 FLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVI--AYDNTQARHVFDQVRNQTEASDT 154 L++ R +GK+ L+A +L ++ G + + ++ A QA VF+ + Sbjct: 51 ILSIARKNGKTGLIAGILLAHLV-GPEAVQNTQIVSGALSREQAAIVFNLAVKMVNLNPK 109 Query: 155 LRVYNENKIFKSTKQGLEFTSFKTT--FKKQTNDTLRAQGGNSSLNIFDE---VHTYGED 209 L+ +I T G + +K + + G + L I DE V +D Sbjct: 110 LQ-----EIVHITPSGKKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDD 164 Query: 210 ITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEEFYNDRSFGLLYMLENH 269 +++ ++ + T D L + + KS++ +Y Sbjct: 165 FIDAITTAQGAHENPLLIVISTQAANDADLLSIWIDDAVKSKDPHI----VCHVYEAPKD 220 Query: 270 EQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTP 329 + +++W A P +G + + E A P+ +N F N+ + + + + Sbjct: 221 ADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFISR 280 Query: 330 QDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFVCELEGKTYS-YTLTFSVRSQYEQL 388 +L + + + Y G+DLS DLTA+ E + + + ++ + E+ Sbjct: 281 SVWELCG-EMPINTPRKWYAGLDLSARNDLTALVIAGEADDGVWDVFPFFWTPQKTLEER 339 Query: 389 DTEQQELWTEFVDRGELILLDTEYIN----VNDLIPYINDFRSKTGCRLRKIGYDPARYE 444 + + +V G L ++ V D+ I DF L + +D R+ Sbjct: 340 TKTDRAPYDVWVREGLLRTTPGASVDYSFVVADIAEIIGDF------DLTSMAFD--RWR 391 Query: 445 ILKGLIERYFFDKDGD------NQRAIRQGF-SMNDYIKLLKSKLVENKLIHNQKVMQWA 497 I + F KD D QGF M + L+S ++ ++ H M Sbjct: 392 IDQ-------FRKDADAIGLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHG---MHPV 441 Query: 498 LNNTAVKIGQSGDYMYTKKLEKDK----IDPTVALTMALEMA 535 L AV D +KL+K K ID VA+TM++ A Sbjct: 442 LTMCAVNAVVVKDAAGNRKLDKSKATGRIDGMVAMTMSVGAA 483 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 63/294 (21%), Positives = 130/294 (44%), Gaps = 57/294 (19%) Query: 30 IRIHN---KYIYRYDRVTQAIEWIQDNFYLTTGNLMKIELLPTQRWWYELMLGYDMVDEK 86 +RI N Y Y D V AIE+ KI+ Q + + ++G+ VD Sbjct: 66 LRIGNDDFPYQYSSDMVN-AIEYFSRLLPNPDDTSKKIQPFKWQSFILDSLIGWRTVD-N 123 Query: 87 GIQVNLVNEIFLNLGRGSGKSSLMATRVLNW---MILGGQYGGESLVIAYDNTQARHVFD 143 G + N +++ R GK+ L A+ ++N+ ++ + LV +YD+ A +F+ Sbjct: 124 GTRFTTSN---ISIARQQGKTWL-ASILINFYYFVVCWNATSQDLLVASYDSEHATKLFN 179 Query: 144 QVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLR---AQGG-----NS 195 V Q + +L + ++ + ++G+E + + K T +T+R +QGG ++ Sbjct: 180 DVSLQAKTILSLPEFADD----ARERGVEAQTTQV-IAKNTKNTIRKGTSQGGGFDSFHN 234 Query: 196 SLNIFDEVHTYGEDITESVNKGSRQKQDNWQSIYITSG--GLKR------DGLYDKLVER 247 ++ ++DE+ + E++ + ITSG G+K Y + + Sbjct: 235 AIAVYDEIGNLRPALNETLKQ-------------ITSGQNGIKNRMFVKISTAYPDIKVK 281 Query: 248 FKSEEEFYN-----------DRSFGLLYMLENHEQVKDKKNWTMALPLIGDVPK 290 FK++E+ D F ++Y ++ ++V + + W + P + ++PK Sbjct: 282 FKNDEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVFEPETWAKSNPNLLELPK 335 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/294 (23%), Positives = 118/294 (40%), Gaps = 35/294 (11%) Query: 96 IFLNLGRGSGKSSLMATRVLNWMILG---GQYGGESLVIAYDNTQARHVFDQVRNQTEAS 152 I +++ R GK+ ++A LN+ L GQ + LV + Q +F V++ Sbjct: 126 IIISIARSQGKT-MIAGICLNFSYLIEIIGQSNQDFLVSSLTFDQTMKLFTYVKSMMA-- 182 Query: 153 DTLRVYNENKIFKS----TKQGLEFTSFKTTFKKQTNDTLRAQGG-----NSSLNIFDEV 203 R+ EN+ FKS T+ L K+ T +T+ + G + L + DEV Sbjct: 183 ---RII-ENEPFKSLAEETQLQLYSREIKSLLDANTINTISFESGKFDSKHFKLAVADEV 238 Query: 204 HTYGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYD----KLVERFKSEEEFYNDRS 259 D S + + + I I++ D + KL+E + + + D Sbjct: 239 GELRTDEGISKITSGQVNTEGSRFIEISTSYQTPDVPFHQEQKKLIEIMERDFDRSGDDQ 298 Query: 260 FGLLYMLENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLAF---NM 316 L++ +N E+V + W + PL+ G+++ + L K F NM Sbjct: 299 LCLIWSQDNLEEVFKPETWAKSNPLLNHPELKEGLMKGLLSERDKKLLMGKLADFQVKNM 358 Query: 317 GLPMQDTAYYFTPQDTKLTDFNLSVFNK-----NRTYVGIDLSLIGDLTAVSFV 365 + + F LTD +V + R YVG+D S+ D TA+ FV Sbjct: 359 NCWLLADSNSFL----DLTDIENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFV 408 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 73/354 (20%), Positives = 125/354 (35%), Gaps = 60/354 (16%) Query: 83 VDEKGIQVNLVNEIFLNLGRGSGKS-------SLMATRVLNWMILGGQYGGESLVIAYDN 135 V+ IQ++ + +FL +GKS L+A +L ++ G+ GE +A D Sbjct: 398 VETVCIQIDHPSHVFL-----AGKSLTPTHNTELLAGIMLYLLVADGEQSGEIYGVARDK 452 Query: 136 TQARHVFDQVRNQTEASDTLRVYNENKIFKSTKQGLEFTSFKTTFKKQTNDTLRAQGGNS 195 QA FD + S L + +K + SF + D A G N Sbjct: 453 KQAALAFDVAAQMVKFSPILSKRLKVVDYKKRIYDAKTNSF---YDVIAADAKSALGSNP 509 Query: 196 SLNIFDEVHTYG-----EDITESVNKGSRQKQDNWQSIYITSGGLKRD-----GLYDKLV 245 S DE+ + + + + G+R Q + + S D GL + + Sbjct: 510 SGCGADEILAWQDGGMWDSLRTGMGSGARV-----QPLMVASTTAGNDTEGFAGLKHREM 564 Query: 246 ERFKSEEEFYNDRSFGLLYMLEN--HEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQG 303 ER E+ D +YM E +++ W A P +G W + ++ A+ Sbjct: 565 ERVM-EDPDNPDFKHIFVYMRNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARN 623 Query: 304 DPALQNKFLAFNMGLPMQDTAYYF-TPQ--DTKLTDFN-----LSVFNKNRTYVGIDLSL 355 +P + F F + T + P + K T F F + G+DL+ Sbjct: 624 NPIAEMAFRQFKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWFGLDLAA 683 Query: 356 IGDLTAVSFVCELEGKTYSYTLTFSVRSQYEQLDTEQQELWTEFVDRGELILLD 409 DL ++ ++ + Q D LW ++ L LD Sbjct: 684 RRDLCSICYL-------------------FPQSDGSVDLLWRHWIPESALAKLD 718 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 32.0 bits (71), Expect = 0.021, Method: Compositional matrix adjust. Identities = 75/328 (22%), Positives = 141/328 (42%), Gaps = 42/328 (12%) Query: 65 ELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG--G 122 EL+P Q++ +++G+ E G + + +++ RG GK+ ++A ++ + G Sbjct: 118 ELMPWQKFIMCMLIGWRN-SEGGKRFTVA---IISVSRGQGKTYILAILMVYSFLFESLG 173 Query: 123 QYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFK--STKQGLEFTSF--KT 178 + LV + + Q +F V+ L+ + + FK + + GL S Sbjct: 174 LSNQDFLVSSINFKQTSKLFGYVKTM------LKTVIKIEPFKTIAAETGLTDRSILNDE 227 Query: 179 TFKKQTNDTLRAQGGNS--------SLNIFDEVH--TYGEDITESVNKGSRQKQDNWQSI 228 K+ N+ +RA + + IFDE+ T E I++ V+ + +N Q + Sbjct: 228 VVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVS--GQVMVENHQFV 285 Query: 229 YITSGGLKRDGLYDK----LVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPL 284 I++ + K L E + + + D S L++ ++ + + + W + PL Sbjct: 286 QISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPL 345 Query: 285 IGDVPK----WSGVIEE--YELAQGD-PALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDF 337 + K G+I++ +L QG Q K L NM L QD Y D + Sbjct: 346 LELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNL--NMWL-QQDVDSYLNLADVEKAII 402 Query: 338 NLSVFNKNRTYVGIDLSLIGDLTAVSFV 365 + R Y+GID S++ D TA++FV Sbjct: 403 PEFSIHGQRCYIGIDYSMMSDNTAIAFV 430 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 31.2 bits (69), Expect = 0.030, Method: Compositional matrix adjust. Identities = 76/328 (23%), Positives = 140/328 (42%), Gaps = 42/328 (12%) Query: 65 ELLPTQRWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILG--G 122 EL+P Q++ +++G+ E G + + +++ RG GK+ ++A ++ + G Sbjct: 115 ELMPWQKFIMCMLIGWRN-SEGGKRFTVA---IISVSRGQGKTYILAILMVYSFLFESLG 170 Query: 123 QYGGESLVIAYDNTQARHVFDQVRNQTEASDTLRVYNENKIFK--STKQGLEFTSF--KT 178 + LV + + Q +F V+ L+ + + FK + + GL S Sbjct: 171 LSNQDFLVSSINFKQTSKLFGYVKTM------LKTVIKIEPFKTIAAETGLTDRSILNDE 224 Query: 179 TFKKQTNDTLRAQGGNS--------SLNIFDEVH--TYGEDITESVNKGSRQKQDNWQSI 228 K+ N+ +RA + + IFDE+ T E I++ V+ K N Q + Sbjct: 225 VVMKKMNNKIRAISHEAGQYDSFHFTTAIFDEIGEVTNREKISKIVSGQVLVK--NHQFV 282 Query: 229 YITSGGLKRDGLYDK----LVERFKSEEEFYNDRSFGLLYMLENHEQVKDKKNWTMALPL 284 I++ + K L E + + + D S L++ ++ + + + W + PL Sbjct: 283 QISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWVKSNPL 342 Query: 285 IGDVPK----WSGVIEE--YELAQGD-PALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDF 337 + K G+I++ +L QG Q K L NM L QD Y D + Sbjct: 343 LELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNL--NMWL-QQDVDSYLNLADVEKAII 399 Query: 338 NLSVFNKNRTYVGIDLSLIGDLTAVSFV 365 + R Y+GID S++ D TA++FV Sbjct: 400 PEFSIHGQRCYIGIDYSMMSDNTAIAFV 427 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneID :5133130 Length = 419 Score = 30.4 bits (67), Expect = 0.051, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%) Query: 101 GRGSGKSSLMATRVLNWMILGGQYGGESLVI-AYDNTQARHVFDQVR 146 GRGSGKSS +A ++ +L +Y +L++ DNT A VF+Q++ Sbjct: 33 GRGSGKSSDIAIIIV---LLIMRYPVNALILRKIDNTLALSVFEQIK 76 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 28.9 bits (63), Expect = 0.14, Method: Compositional matrix adjust. Identities = 12/20 (60%), Positives = 15/20 (75%) Query: 346 RTYVGIDLSLIGDLTAVSFV 365 R YVG+D S+ D TAV+FV Sbjct: 397 RCYVGVDYSMSSDNTAVAFV 416 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 28.5 bits (62), Expect = 0.22, Method: Compositional matrix adjust. Identities = 67/296 (22%), Positives = 128/296 (43%), Gaps = 43/296 (14%) Query: 98 LNLGRGSGKSSLMAT-RVLNWMILG-GQYGGESLVIAYDNTQARHVFDQVRNQTEASDTL 155 +++GRG GK+ LMA ++ I G + LV + + Q + +++ + Sbjct: 126 VSVGRGQGKTYLMAILTAYSYFIESLGLSNQDYLVTSINFKQTNKLLGYIKSM------M 179 Query: 156 RVYNENKIFKSTKQGLEF-TSFKTTFKKQTNDTLRAQGGNS--------SLNIFDEVHTY 206 + +N+ FKS E K N+ LRA S + IFDE+ Sbjct: 180 KQIIQNEPFKSLANETELGLHSDQVIMKANNNVLRAISAESGQYDSFHFTTAIFDEI--- 236 Query: 207 GE-DITESVNK--GSRQKQDNWQSIYITSGGLKRDGLYDK----LVERFKSEEEFYNDRS 259 GE + ++V+K + K N Q I I++ + + + + + ++ D Sbjct: 237 GEIETRDAVSKIVSGQVKVPNRQFIQISTAYPNPSVPFREDQRIMQQAMEDDDSRDADTY 296 Query: 260 FGLLYMLENHEQVKDKKNWTMALPLIGDVPK-----WSGVIE--EYELAQGDPALQNKFL 312 L++ +N E+V + W + PL+ D+ + G+++ + +L G+ A F Sbjct: 297 LCLVWSQDNLEEVFKPETWAKSNPLL-DLEQERENLMKGLMDKRDSDLLSGNIA---DFQ 352 Query: 313 AFNMGL-PMQDTAYYFTPQDTKLTDFNLSVFNK--NRTYVGIDLSLIGDLTAVSFV 365 NM + D+ + +D + + + F++ R YVG+D S+ D TA+ FV Sbjct: 353 VKNMNCWLLADSNSFLDLKD--IENAVIPEFDRRGKRVYVGLDASMFSDNTAIGFV 406 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 28.1 bits (61), Expect = 0.25, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 346 RTYVGIDLSLIGDLTAVSFV 365 R YVG+D S+ D TA+ FV Sbjct: 133 RVYVGLDASMFSDNTAIGFV 152 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 27.3 bits (59), Expect = 0.47, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 346 RTYVGIDLSLIGDLTAVSFV 365 R YVG+D S+ D TA+ FV Sbjct: 387 RVYVGLDASMFSDNTALGFV 406 >gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: gp5 # Family: family:all:523 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552334;genbank:gi:160700654;genbank:Ge neID:5758934 Length = 544 Score = 26.9 bits (58), Expect = 0.54, Method: Compositional matrix adjust. Identities = 42/219 (19%), Positives = 86/219 (39%), Gaps = 15/219 (6%) Query: 95 EIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQ-ARHVFDQVRNQTEASD 153 ++ L + R +GK+ L+A R+ I G + GE +V Q + V+D++ + Sbjct: 99 DVCLIIPRQNGKTQLIALRI----IYGLFFLGEKIVYTAQRWQTVKDVYDRIVEIIKRRP 154 Query: 154 TL--RVYNENKIFKSTKQGLEFTSFKTT------FKKQTNDTLRAQGGNSSLNIFDEVHT 205 +L R+ + + + TT +T R Q L IFDE + Sbjct: 155 SLLRRLKPMPGVPDGYSEAGQHGEIYTTNGGSLDMGPRTKAVGRGQT-KIDLAIFDEAYD 213 Query: 206 YGEDITESVNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKSEEEFYNDRSFGLLYM 265 +D+ G+++ N Q+IYI++ + + ++ + + + + Sbjct: 214 I-KDVLVGGLTGAQKAATNPQTIYISTAAVASEHPDCGVLAGMRRNGQRKEPDLYAAEWC 272 Query: 266 LENHEQVKDKKNWTMALPLIGDVPKWSGVIEEYELAQGD 304 D + W +A P G + + EY +A+ + Sbjct: 273 APPGMARDDPEAWRLACPSFGITVRERDLAREYRMARAN 311 >gi|21825|lcl|protein:vir:98727 Length: 592 # NCBI annotation: terminase # Family: family:all:11211 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851132;genbank:gi:117530289;genbank:GeneI D:4484391 Length = 592 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Query: 322 DTAYYFTPQDTKLTDFNLSVFNKNRTYVGIDLSLIGDLTAVSFV 365 DT +Y + Q T+L + + R+Y+ +D L D A++FV Sbjct: 350 DTRHYVSLQITRLERLS-----EGRSYLHVDYGLKKDSAAIAFV 388 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 17/23 (73%) Query: 94 NEIFLNLGRGSGKSSLMATRVLN 116 + +++ GRGSGKSS +A V++ Sbjct: 44 SHVWMKGGRGSGKSSFVALMVVD 66 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 8/26 (30%), Positives = 17/26 (65%) Query: 414 NVNDLIPYINDFRSKTGCRLRKIGYD 439 N+ DL+P++++ + + G R I +D Sbjct: 103 NIIDLLPFLSELKPRPGQRDSVISFD 128 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneID :3197313 Length = 453 Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 9/84 (10%) Query: 98 LNLGRGSGKSSLMATRVLNWM---ILGGQYGGESLVIAYDNTQARHVFDQVRNQTEASDT 154 L GR S KSS++A +++ M IL G+ ++ NT VF++++ Sbjct: 34 LKGGRNSFKSSVIALKLVFMMLLYILKGEKANVVVIRKVGNTIRDSVFNKIQW------A 87 Query: 155 LRVYNENKIFKSTKQGLEFTSFKT 178 ++++ + FK T + T +T Sbjct: 88 IKLFGLTRRFKPTVSPFKITHKRT 111 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 23.9 bits (50), Expect = 4.9, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 12/54 (22%) Query: 235 LKRDGLY---------DKLVERFKSEEEF---YNDRSFGLLYMLENHEQVKDKK 276 +KRDG+Y D +++ + ++F +DR + L+N+ VKDKK Sbjct: 328 MKRDGIYRIRPALKGPDSIIQGIQFLQQFKWVVDDRCVKTIEELQNYTYVKDKK 381 >gi|27826|lcl|protein:vir:8436 Length: 334 # NCBI annotation: gp31 # Family: family:all:1912 # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818332;genbank:gi:29566768;genbank:GeneID :1260104 Length = 334 Score = 23.9 bits (50), Expect = 5.1, Method: Compositional matrix adjust. Identities = 10/37 (27%), Positives = 14/37 (37%) Query: 234 GLKRDGLYDKLVERFKSEEEFYNDRSFGLLYMLENHE 270 GL DG + E K + D G ++ HE Sbjct: 52 GLGNDGFFSPFAEDGKLRSDLLGDNGLGFYHLGALHE 88 >gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224236;genbank:gi:62362371;genbank:GeneID :3345721 Length = 408 Score = 23.5 bits (49), Expect = 6.1, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 11/17 (64%) Query: 281 ALPLIGDVPKWSGVIEE 297 +P I VPKW G +E+ Sbjct: 317 GIPRIEGVPKWKGSVED 333 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.136 0.396 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 258,160 Number of Sequences: 514 Number of extensions: 12526 Number of successful extensions: 239 Number of sequences better than 100.0: 85 Number of HSP's better than 100.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 52 Number of HSP's gapped (non-prelim): 98 length of query: 540 length of database: 206,069 effective HSP length: 76 effective length of query: 464 effective length of database: 167,005 effective search space: 77490320 effective search space used: 77490320 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)