Query lcl|Aclame:protein:vir:102602|NCBI_annot:gp3|genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Match_columns 456 No_of_seqs 153 out of 563 Neff 10.0 Searched_HMMs 1612 Date Mon Dec 2 08:25:06 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_76 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_76_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:105819 Length: 456 100.0 7E-114 4E-117 641.0 50.6 456 1-456 1-456 (456) 2 protein:vir:102602 Length: 456 100.0 7E-114 4E-117 641.0 50.6 456 1-456 1-456 (456) 3 protein:vir:7987 Length: 456 # 100.0 1E-111 8E-115 628.4 51.1 456 1-456 1-456 (456) 4 protein:vir:7768 Length: 484 # 100.0 3.3E-91 2E-94 516.6 49.0 431 1-456 8-466 (484) 5 protein:vir:104082 Length: 485 100.0 6.5E-91 4E-94 515.0 49.4 432 1-456 1-467 (485) 6 protein:vir:4223 Length: 486 # 100.0 4.1E-90 2.5E-93 510.6 48.2 431 1-456 8-475 (486) 7 protein:vir:2500 Length: 501 # 100.0 3.1E-90 1.9E-93 511.3 47.4 438 1-455 23-501 (501) 8 protein:vir:78227 Length: 480 100.0 1.5E-89 9.1E-93 507.6 48.7 432 3-456 1-464 (480) 9 protein:vir:2341 Length: 488 # 100.0 2.9E-89 1.8E-92 506.0 49.3 433 1-456 1-480 (488) 10 protein:vir:2427 Length: 485 # 100.0 1.7E-89 1.1E-92 507.2 48.0 432 1-456 1-471 (485) 11 protein:vir:78537 Length: 480 100.0 2.8E-89 1.7E-92 506.1 48.6 432 3-456 1-465 (480) 12 protein:vir:99916 Length: 504 100.0 6.4E-88 4E-91 498.6 47.0 432 1-456 15-481 (504) 13 protein:vir:8184 Length: 474 # 100.0 9.4E-88 5.8E-91 497.7 45.9 433 1-456 9-474 (474) 14 protein:vir:80680 Length: 441 100.0 2.6E-86 1.6E-89 489.8 47.1 419 2-453 1-441 (441) 15 protein:vir:99072 Length: 479 100.0 1E-83 6.4E-87 475.6 46.8 426 1-456 1-459 (479) 16 protein:vir:9568 Length: 410 # 100.0 1.5E-83 9.4E-87 474.6 38.9 386 17-444 1-410 (410) 17 protein:vir:3964 Length: 453 # 100.0 6.9E-82 4.3E-85 465.5 46.2 428 1-456 11-448 (453) 18 protein:vir:97171 Length: 512 100.0 5.1E-82 3.2E-85 466.3 45.2 442 1-456 31-505 (512) 19 protein:vir:94742 Length: 409 100.0 1.4E-82 8.4E-86 469.4 40.3 385 4-426 1-409 (409) 20 protein:vir:99522 Length: 470 100.0 4.2E-81 2.6E-84 461.2 46.8 428 1-456 19-469 (470) 21 protein:vir:98444 Length: 434 100.0 2.5E-81 1.6E-84 462.5 44.4 407 39-456 1-432 (434) 22 protein:vir:1634 Length: 409 # 100.0 5.8E-82 3.6E-85 466.0 40.1 385 4-426 1-409 (409) 23 protein:vir:1236 Length: 483 # 100.0 8.8E-81 5.5E-84 459.5 46.5 435 1-456 31-472 (483) 24 protein:vir:97336 Length: 492 100.0 1.2E-80 7.6E-84 458.7 46.7 435 1-456 38-489 (492) 25 protein:vir:9751 Length: 422 # 100.0 2.3E-81 1.4E-84 462.7 42.0 397 4-454 1-422 (422) 26 protein:vir:94805 Length: 492 100.0 2.1E-80 1.3E-83 457.4 46.6 435 1-456 37-489 (492) 27 protein:vir:103951 Length: 511 100.0 2.4E-80 1.5E-83 457.1 46.0 441 1-456 37-504 (511) 28 protein:vir:106571 Length: 499 100.0 2.3E-80 1.4E-83 457.2 45.8 429 1-456 13-476 (499) 29 protein:vir:733 Length: 453 # 100.0 2.3E-80 1.5E-83 457.1 45.3 429 1-456 11-453 (453) 30 protein:vir:9306 Length: 511 # 100.0 3.5E-80 2.2E-83 456.2 46.0 440 1-456 37-504 (511) 31 protein:vir:78805 Length: 511 100.0 4.1E-80 2.6E-83 455.8 46.4 441 1-456 37-504 (511) 32 protein:vir:96366 Length: 511 100.0 4.1E-80 2.6E-83 455.8 46.4 441 1-456 37-504 (511) 33 protein:vir:96266 Length: 474 100.0 7.8E-80 4.9E-83 454.3 47.8 434 1-456 23-472 (474) 34 protein:vir:95899 Length: 474 100.0 7.8E-80 4.9E-83 454.3 47.8 434 1-456 23-472 (474) 35 protein:vir:99781 Length: 511 100.0 6E-80 3.7E-83 454.9 46.9 441 1-456 37-504 (511) 36 protein:vir:4898 Length: 502 # 100.0 4E-80 2.5E-83 455.9 45.6 433 1-456 37-499 (502) 37 protein:vir:95806 Length: 440 100.0 2.1E-80 1.3E-83 457.4 43.8 423 12-456 1-436 (440) 38 protein:vir:96494 Length: 501 100.0 3.2E-80 2E-83 456.4 44.8 435 1-456 30-491 (501) 39 protein:vir:2732 Length: 501 # 100.0 7E-80 4.3E-83 454.5 45.2 434 1-456 36-489 (501) 40 protein:vir:96240 Length: 511 100.0 1.2E-79 7.5E-83 453.2 46.2 440 1-456 37-499 (511) 41 protein:vir:102330 Length: 451 100.0 1.4E-79 8.6E-83 452.9 45.5 428 4-451 1-451 (451) 42 protein:vir:3609 Length: 452 # 100.0 1.9E-79 1.2E-82 452.1 46.0 418 1-456 11-443 (452) 43 protein:vir:93747 Length: 472 100.0 2.8E-79 1.8E-82 451.2 46.5 432 1-456 18-461 (472) 44 protein:vir:94498 Length: 474 100.0 7.1E-79 4.4E-82 449.0 46.6 434 1-456 21-471 (474) 45 protein:vir:97447 Length: 474 100.0 7.1E-79 4.4E-82 449.0 46.6 434 1-456 21-471 (474) 46 protein:vir:9871 Length: 429 # 100.0 4.7E-79 2.9E-82 450.0 45.5 413 4-453 1-429 (429) 47 protein:vir:94546 Length: 506 100.0 1.1E-78 6.6E-82 448.1 46.4 438 1-456 19-501 (506) 48 protein:vir:95113 Length: 474 100.0 6.9E-78 4.3E-81 443.6 46.6 433 1-456 24-463 (474) 49 protein:vir:102950 Length: 471 100.0 8.9E-78 5.5E-81 443.0 46.0 445 1-456 1-468 (471) 50 protein:vir:105461 Length: 470 100.0 1E-77 6.4E-81 442.7 45.8 441 1-456 1-470 (470) 51 protein:vir:106639 Length: 481 100.0 1.8E-77 1.1E-80 441.4 46.2 433 1-456 27-481 (481) 52 protein:vir:105292 Length: 478 100.0 2.3E-77 1.4E-80 440.7 46.7 439 1-456 1-476 (478) 53 protein:vir:96839 Length: 474 100.0 4.8E-77 3E-80 439.0 47.0 437 1-456 22-466 (474) 54 protein:vir:5961 Length: 503 # 100.0 2.9E-77 1.8E-80 440.2 45.7 440 1-456 25-491 (503) 55 protein:vir:107112 Length: 478 100.0 6E-77 3.7E-80 438.5 46.7 439 1-456 20-478 (478) 56 protein:vir:94101 Length: 474 100.0 1.8E-76 1.1E-79 435.9 46.3 426 1-456 12-470 (474) 57 protein:vir:105889 Length: 474 100.0 1.8E-76 1.1E-79 435.9 46.3 426 1-456 12-470 (474) 58 protein:vir:96179 Length: 468 100.0 5.4E-76 3.4E-79 433.2 46.7 436 1-455 23-468 (468) 59 protein:vir:9922 Length: 489 # 100.0 2.5E-75 1.6E-78 429.6 47.9 438 1-456 12-482 (489) 60 protein:vir:79043 Length: 479 100.0 1.7E-75 1.1E-78 430.5 46.8 439 1-455 16-479 (479) 61 protein:vir:78083 Length: 537 100.0 9.7E-75 6E-78 426.3 44.1 442 1-456 1-506 (537) 62 protein:vir:38 Length: 496 # N 100.0 1.2E-55 7.5E-59 321.7 41.0 449 1-453 1-496 (496) 63 protein:vir:80959 Length: 499 100.0 5.2E-53 3.2E-56 307.2 40.7 449 1-456 1-498 (499) 64 protein:vir:1587 Length: 508 # 100.0 1.7E-46 1.1E-49 271.5 39.3 440 4-456 1-507 (508) 65 protein:vir:79703 Length: 505 100.0 1.9E-44 1.2E-47 260.3 45.6 442 1-453 14-505 (505) 66 protein:vir:9815 Length: 500 # 100.0 7.2E-43 4.5E-46 251.6 40.3 441 4-455 1-500 (500) 67 protein:vir:3028 Length: 500 # 100.0 7.2E-43 4.5E-46 251.6 40.3 441 4-455 1-500 (500) 68 protein:vir:101494 Length: 527 100.0 1.4E-43 8.9E-47 255.5 32.9 434 1-456 21-514 (527) 69 protein:vir:102239 Length: 527 100.0 1.8E-43 1.1E-46 255.0 32.9 434 1-456 21-514 (527) 70 protein:vir:4782 Length: 522 # 100.0 7E-40 4.3E-43 235.3 43.0 447 1-454 1-522 (522) 71 protein:vir:78907 Length: 518 100.0 3.9E-38 2.4E-41 225.7 39.2 438 4-454 1-518 (518) 72 protein:vir:7430 Length: 563 # 100.0 1.4E-39 8.9E-43 233.5 30.5 440 1-456 9-532 (563) 73 protein:vir:98883 Length: 517 100.0 4.9E-37 3E-40 219.7 43.1 443 4-456 1-513 (517) 74 protein:vir:97265 Length: 513 99.9 2.7E-27 1.7E-30 166.3 35.7 426 1-456 1-494 (513) 75 protein:vir:94956 Length: 452 99.9 2.6E-27 1.6E-30 166.3 34.7 419 1-456 1-451 (452) 76 protein:vir:80453 Length: 535 99.9 1.4E-24 8.7E-28 151.4 32.8 433 1-456 28-519 (535) 77 protein:vir:78393 Length: 489 99.9 3.1E-23 1.9E-26 144.0 34.4 434 1-456 1-485 (489) 78 protein:vir:95149 Length: 501 99.9 1.1E-22 6.8E-26 141.0 37.4 432 1-456 1-496 (501) 79 protein:vir:95014 Length: 491 99.9 6.5E-22 4.1E-25 136.7 34.2 435 1-456 1-489 (491) 80 protein:vir:79538 Length: 502 99.8 1.3E-18 8E-22 118.7 37.2 424 7-456 1-500 (502) 81 protein:vir:10321 Length: 495 99.8 2.7E-18 1.7E-21 116.9 37.3 425 2-456 1-483 (495) 82 protein:vir:389 Length: 530 # 99.8 5.8E-19 3.6E-22 120.6 31.7 422 1-456 1-528 (530) 83 protein:vir:96783 Length: 488 99.8 3.8E-19 2.3E-22 121.6 30.6 415 1-444 14-488 (488) 84 protein:vir:3420 Length: 533 # 99.8 1.1E-17 6.8E-21 113.6 38.6 429 1-456 1-532 (533) 85 protein:vir:96738 Length: 505 99.8 4.7E-18 2.9E-21 115.6 35.4 430 1-456 1-495 (505) 86 protein:vir:6382 Length: 553 # 99.8 3E-17 1.9E-20 111.2 36.6 437 1-456 9-550 (553) 87 protein:vir:80040 Length: 461 99.7 8.9E-19 5.6E-22 119.5 24.0 423 1-454 1-461 (461) 88 protein:vir:95542 Length: 548 99.7 2.1E-16 1.3E-19 106.5 35.6 424 7-456 1-505 (548) 89 protein:vir:93630 Length: 776 99.7 4E-16 2.5E-19 105.0 30.6 434 1-456 38-677 (776) 90 protein:vir:5249 Length: 437 # 99.7 6.6E-17 4.1E-20 109.3 26.3 394 21-456 1-436 (437) 91 protein:vir:107742 Length: 537 99.7 8.6E-17 5.3E-20 108.7 24.8 401 1-456 68-534 (537) 92 protein:vir:108295 Length: 711 99.7 5.2E-15 3.2E-18 98.9 33.8 438 1-456 23-661 (711) 93 protein:vir:104338 Length: 422 99.6 9.1E-16 5.7E-19 103.0 26.0 384 1-453 1-422 (422) 94 protein:vir:105619 Length: 772 99.6 4.2E-15 2.6E-18 99.4 29.0 436 1-456 19-654 (772) 95 protein:vir:94049 Length: 532 99.6 1.1E-15 6.6E-19 102.7 25.4 407 1-456 23-509 (532) 96 protein:vir:79647 Length: 435 99.6 1.3E-15 8.2E-19 102.2 23.9 389 1-456 5-435 (435) 97 protein:vir:2764 Length: 714 # 99.6 6.8E-14 4.2E-17 92.8 33.3 439 1-456 8-649 (714) 98 protein:vir:3296 Length: 714 # 99.6 6.8E-14 4.2E-17 92.8 33.3 439 1-456 8-649 (714) 99 protein:vir:9950 Length: 714 # 99.6 6.8E-14 4.2E-17 92.8 33.3 439 1-456 8-649 (714) 100 protein:vir:817 Length: 714 # 99.6 6.8E-14 4.2E-17 92.8 33.3 439 1-456 8-649 (714) 101 protein:vir:10117 Length: 714 99.6 6.8E-14 4.2E-17 92.8 33.3 439 1-456 8-649 (714) 102 protein:vir:107662 Length: 427 99.6 2.4E-15 1.5E-18 100.8 23.2 389 14-456 1-425 (427) 103 protein:vir:99563 Length: 862 99.6 1E-15 6.4E-19 102.8 21.1 420 1-456 68-554 (862) 104 protein:vir:104437 Length: 714 99.6 6.2E-14 3.9E-17 93.0 30.2 437 1-456 1-651 (714) 105 protein:vir:96068 Length: 765 99.5 3E-14 1.8E-17 94.8 25.3 407 1-456 69-535 (765) 106 protein:vir:105429 Length: 708 99.5 5.3E-13 3.3E-16 87.9 31.5 447 1-456 1-643 (708) 107 protein:vir:8846 Length: 705 # 99.5 1.9E-12 1.2E-15 84.8 33.9 426 1-456 7-618 (705) 108 protein:vir:172 Length: 708 # 99.5 2.5E-12 1.5E-15 84.2 31.4 442 1-456 1-643 (708) 109 protein:vir:77597 Length: 725 99.4 7E-12 4.3E-15 81.8 31.2 441 1-456 1-624 (725) 110 protein:vir:105520 Length: 706 99.4 6E-12 3.7E-15 82.1 30.5 445 1-456 1-635 (706) 111 protein:vir:80165 Length: 651 99.4 1.8E-11 1.1E-14 79.5 31.9 427 1-456 5-590 (651) 112 protein:vir:100920 Length: 725 99.3 5E-11 3.1E-14 77.1 31.6 439 1-456 1-624 (725) 113 protein:vir:1380 Length: 422 # 99.3 8E-12 4.9E-15 81.4 26.2 392 7-456 1-422 (422) 114 protein:vir:9263 Length: 725 # 99.3 3.7E-11 2.3E-14 77.8 28.7 444 1-456 1-624 (725) 115 protein:vir:106716 Length: 698 99.3 2.6E-11 1.6E-14 78.6 25.5 399 1-456 60-550 (698) 116 protein:vir:7407 Length: 392 # 99.3 3.8E-11 2.4E-14 77.7 26.1 369 1-456 1-389 (392) 117 protein:vir:63755 Length: 547 99.2 1.5E-10 9.2E-14 74.5 28.9 403 1-456 31-524 (547) 118 protein:vir:3153 Length: 467 # 99.2 4.2E-11 2.6E-14 77.5 25.9 376 48-456 1-464 (467) 119 protein:vir:3648 Length: 695 # 99.2 7.2E-11 4.5E-14 76.2 26.3 401 1-456 77-547 (695) 120 protein:vir:101541 Length: 694 99.2 1E-10 6.5E-14 75.3 26.5 408 1-456 59-546 (694) 121 protein:vir:101648 Length: 518 99.2 6.1E-11 3.8E-14 76.6 25.2 386 1-456 9-435 (518) 122 protein:vir:6240 Length: 457 # 99.2 6.3E-11 3.9E-14 76.5 24.9 396 7-456 1-443 (457) 123 protein:vir:78589 Length: 695 99.2 1.2E-10 7.7E-14 74.9 26.2 399 1-456 60-547 (695) 124 protein:vir:79772 Length: 648 99.2 6.4E-10 3.9E-13 71.0 31.0 395 1-456 43-485 (648) 125 protein:vir:3520 Length: 720 # 99.2 6.9E-10 4.3E-13 70.8 29.9 443 1-456 1-634 (720) 126 protein:vir:105782 Length: 449 99.2 1.4E-10 9E-14 74.5 25.5 404 1-456 1-449 (449) 127 protein:vir:107605 Length: 432 99.2 5.4E-10 3.4E-13 71.4 28.5 395 7-456 1-426 (432) 128 protein:vir:105002 Length: 432 99.2 5.4E-10 3.4E-13 71.4 28.5 395 7-456 1-426 (432) 129 protein:vir:102855 Length: 432 99.2 5.4E-10 3.4E-13 71.4 28.5 395 7-456 1-426 (432) 130 protein:vir:81152 Length: 411 99.2 3.5E-10 2.1E-13 72.5 27.3 380 7-453 1-411 (411) 131 protein:vir:1266 Length: 416 # 99.2 2.7E-10 1.7E-13 73.0 26.7 385 8-454 1-416 (416) 132 protein:vir:102080 Length: 429 99.2 6.3E-11 3.9E-14 76.5 23.2 386 7-456 1-423 (429) 133 protein:vir:3843 Length: 397 # 99.2 7.3E-11 4.5E-14 76.2 23.5 378 7-456 1-395 (397) 134 protein:vir:1326 Length: 457 # 99.2 4.3E-10 2.7E-13 71.9 27.6 401 7-456 1-439 (457) 135 protein:vir:3989 Length: 392 # 99.2 2.1E-10 1.3E-13 73.6 25.8 370 9-456 1-389 (392) 136 protein:vir:1023 Length: 392 # 99.2 2.1E-10 1.3E-13 73.6 25.8 370 9-456 1-389 (392) 137 protein:vir:8418 Length: 409 # 99.2 5.2E-10 3.2E-13 71.5 27.7 382 7-456 1-409 (409) 138 protein:vir:102118 Length: 409 99.2 3E-10 1.9E-13 72.8 26.2 389 8-456 1-409 (409) 139 protein:vir:95449 Length: 584 99.1 1.3E-09 8.1E-13 69.3 29.9 431 1-456 1-584 (584) 140 protein:vir:7853 Length: 518 # 99.1 1.2E-10 7.6E-14 74.9 23.5 386 1-456 9-435 (518) 141 protein:vir:4952 Length: 386 # 99.1 3.3E-10 2E-13 72.6 25.7 372 7-456 1-385 (386) 142 protein:vir:81095 Length: 416 99.1 1.3E-09 8.1E-13 69.3 28.3 388 7-456 1-414 (416) 143 protein:vir:4598 Length: 416 # 99.1 1.3E-09 8.1E-13 69.3 28.3 388 7-456 1-414 (416) 144 protein:vir:80644 Length: 551 99.1 1.6E-09 1E-12 68.8 28.1 404 3-456 1-517 (551) 145 protein:vir:93610 Length: 454 99.1 2.5E-09 1.6E-12 67.7 29.7 379 1-456 15-434 (454) 146 protein:vir:81072 Length: 432 99.1 1.6E-09 9.8E-13 68.8 26.3 393 1-456 1-424 (432) 147 protein:vir:102727 Length: 945 99.1 3.5E-09 2.2E-12 66.9 28.3 404 1-456 47-532 (945) 148 protein:vir:93943 Length: 409 99.0 3.3E-09 2E-12 67.1 26.9 390 4-454 1-409 (409) 149 protein:vir:4454 Length: 414 # 99.0 1.8E-09 1.1E-12 68.5 25.3 385 7-456 1-409 (414) 150 protein:vir:10362 Length: 432 99.0 4.8E-09 3E-12 66.2 27.5 395 1-456 1-432 (432) 151 protein:vir:94426 Length: 409 99.0 3.4E-09 2.1E-12 67.0 26.4 393 4-456 1-407 (409) 152 protein:vir:100150 Length: 437 99.0 6.4E-09 4E-12 65.5 28.0 383 13-456 1-435 (437) 153 protein:vir:9359 Length: 348 # 99.0 2E-09 1.2E-12 68.3 24.5 335 71-456 1-346 (348) 154 protein:vir:9408 Length: 441 # 99.0 8.7E-09 5.4E-12 64.8 27.2 394 1-456 1-439 (441) 155 protein:vir:79984 Length: 441 99.0 8.7E-09 5.4E-12 64.8 27.2 394 1-456 1-439 (441) 156 protein:vir:4854 Length: 386 # 99.0 5.2E-09 3.2E-12 66.0 25.2 374 7-456 1-386 (386) 157 protein:vir:105064 Length: 421 99.0 3.3E-09 2.1E-12 67.1 24.0 381 12-456 1-413 (421) 158 protein:vir:483 Length: 413 # 98.9 7E-09 4.4E-12 65.3 25.7 384 8-456 1-408 (413) 159 protein:vir:97060 Length: 432 98.9 1E-08 6.3E-12 64.4 26.3 393 1-456 1-432 (432) 160 protein:vir:5737 Length: 419 # 98.9 1.4E-08 8.5E-12 63.7 26.4 370 25-456 1-415 (419) 161 protein:vir:960 Length: 413 # 98.9 9.8E-09 6.1E-12 64.5 25.4 386 1-454 1-413 (413) 162 protein:vir:1884 Length: 424 # 98.9 1.6E-08 1E-11 63.3 25.9 392 1-455 1-424 (424) 163 protein:vir:2683 Length: 412 # 98.9 1.8E-08 1.1E-11 63.0 27.9 392 1-456 1-410 (412) 164 protein:vir:94599 Length: 641 98.9 2.1E-08 1.3E-11 62.7 30.2 437 1-456 20-598 (641) 165 protein:vir:4828 Length: 382 # 98.9 1.2E-08 7.5E-12 64.0 24.4 372 7-456 1-381 (382) 166 protein:vir:80796 Length: 574 98.9 2.3E-08 1.4E-11 62.5 32.0 408 1-456 11-518 (574) 167 protein:vir:4509 Length: 424 # 98.9 9.9E-09 6.2E-12 64.5 23.8 383 1-456 1-422 (424) 168 protein:vir:99232 Length: 526 98.9 2.5E-08 1.5E-11 62.3 30.6 371 1-456 37-431 (526) 169 protein:vir:4995 Length: 384 # 98.8 5.3E-09 3.3E-12 66.0 21.3 371 7-456 1-383 (384) 170 protein:vir:98396 Length: 441 98.8 3.3E-08 2E-11 61.6 31.4 393 1-456 1-439 (441) 171 protein:vir:189 Length: 424 # 98.8 3.5E-08 2.1E-11 61.5 25.7 392 1-455 1-424 (424) 172 protein:vir:101647 Length: 460 98.8 5.6E-08 3.5E-11 60.3 28.5 398 1-456 1-460 (460) 173 protein:vir:100882 Length: 383 98.8 6E-08 3.7E-11 60.2 26.1 373 1-456 1-382 (383) 174 protein:vir:96980 Length: 409 98.7 7.5E-08 4.7E-11 59.6 27.4 390 1-456 1-407 (409) 175 protein:vir:103860 Length: 528 98.7 7.9E-08 4.9E-11 59.5 30.8 380 1-456 37-444 (528) 176 protein:vir:81218 Length: 423 98.7 7.7E-08 4.8E-11 59.6 24.2 392 7-456 1-423 (423) 177 protein:vir:100187 Length: 385 98.7 1.1E-07 6.5E-11 58.8 27.9 371 1-453 1-385 (385) 178 protein:vir:95821 Length: 763 98.7 1.3E-07 7.9E-11 58.4 30.0 418 1-456 20-624 (763) 179 protein:vir:104259 Length: 403 98.7 1.3E-07 8.1E-11 58.3 24.4 370 7-456 1-401 (403) 180 protein:vir:101289 Length: 395 98.6 6.5E-08 4E-11 60.0 21.9 366 7-455 1-395 (395) 181 protein:vir:9507 Length: 395 # 98.6 6.5E-08 4E-11 60.0 21.9 366 7-455 1-395 (395) 182 protein:vir:100650 Length: 395 98.6 6.5E-08 4E-11 60.0 21.9 366 7-455 1-395 (395) 183 protein:vir:80333 Length: 419 98.6 1.7E-07 1E-10 57.8 26.4 377 1-456 1-404 (419) 184 protein:vir:78310 Length: 376 98.6 1.8E-07 1.1E-10 57.6 24.3 359 7-454 1-376 (376) 185 protein:vir:4337 Length: 434 # 98.6 1.9E-07 1.2E-10 57.4 29.7 384 1-452 1-434 (434) 186 protein:vir:1431 Length: 419 # 98.6 2E-07 1.2E-10 57.3 26.7 387 8-456 1-412 (419) 187 protein:vir:9641 Length: 395 # 98.6 2E-07 1.3E-10 57.3 23.5 372 7-455 1-395 (395) 188 protein:vir:95599 Length: 563 98.6 2.1E-07 1.3E-10 57.2 26.9 369 1-456 50-524 (563) 189 protein:vir:99312 Length: 563 98.6 2.1E-07 1.3E-10 57.2 26.9 369 1-456 50-524 (563) 190 protein:vir:100691 Length: 535 98.6 2.2E-07 1.4E-10 57.0 30.9 392 1-456 52-516 (535) 191 protein:vir:95378 Length: 406 98.6 2.4E-07 1.5E-10 56.9 23.9 379 7-456 1-405 (406) 192 protein:vir:79233 Length: 526 98.5 3.1E-07 1.9E-10 56.2 33.3 368 1-456 1-431 (526) 193 protein:vir:1082 Length: 359 # 98.5 3.6E-07 2.2E-10 55.9 24.9 342 1-426 1-359 (359) 194 protein:vir:96579 Length: 576 98.5 3.7E-07 2.3E-10 55.8 28.1 369 1-456 71-520 (576) 195 protein:vir:4156 Length: 542 # 98.5 4.4E-07 2.7E-10 55.4 24.4 395 1-456 6-455 (542) 196 protein:vir:4089 Length: 395 # 98.5 4.9E-07 3E-10 55.2 23.1 371 7-456 1-395 (395) 197 protein:vir:98643 Length: 395 98.5 5.4E-07 3.3E-10 55.0 23.9 371 7-455 1-395 (395) 198 protein:vir:3139 Length: 599 # 98.4 6.3E-07 3.9E-10 54.6 30.2 437 1-456 13-599 (599) 199 protein:vir:95965 Length: 385 98.4 6.3E-07 3.9E-10 54.6 25.3 363 7-453 1-385 (385) 200 protein:vir:6210 Length: 394 # 98.4 7E-07 4.3E-10 54.3 23.8 375 7-456 1-391 (394) 201 protein:vir:107880 Length: 491 98.4 7.1E-07 4.4E-10 54.3 32.2 382 1-456 1-416 (491) 202 protein:vir:99853 Length: 488 98.4 7.3E-07 4.5E-10 54.2 30.4 378 10-456 1-403 (488) 203 protein:vir:79063 Length: 491 98.4 8.5E-07 5.3E-10 53.9 27.7 390 1-456 1-420 (491) 204 protein:vir:3868 Length: 417 # 98.4 9.8E-07 6.1E-10 53.5 26.1 367 28-456 1-416 (417) 205 protein:vir:99452 Length: 651 98.4 1.1E-06 6.9E-10 53.2 23.2 432 1-456 1-538 (651) 206 protein:vir:1986 Length: 512 # 98.3 1.2E-06 7.2E-10 53.1 28.5 375 1-456 37-470 (512) 207 protein:vir:7321 Length: 556 # 98.3 1.6E-06 9.7E-10 52.4 36.7 425 1-456 1-531 (556) 208 protein:vir:9702 Length: 406 # 98.2 2.2E-06 1.4E-09 51.6 26.5 368 1-456 1-403 (406) 209 protein:vir:94666 Length: 723 98.2 3.2E-06 2E-09 50.7 31.5 370 1-456 1-409 (723) 210 protein:vir:95315 Length: 559 98.1 3.6E-06 2.2E-09 50.4 37.5 426 1-456 1-557 (559) 211 protein:vir:94709 Length: 522 98.1 4.2E-06 2.6E-09 50.0 35.2 426 1-456 1-514 (522) 212 protein:vir:103219 Length: 201 98.1 6.9E-08 4.3E-11 59.8 10.1 182 227-453 1-201 (201) 213 protein:vir:80134 Length: 403 98.1 4.5E-06 2.8E-09 49.9 25.9 373 1-456 1-402 (403) 214 protein:vir:100249 Length: 431 98.1 4.5E-06 2.8E-09 49.9 27.5 385 7-455 1-431 (431) 215 protein:vir:104500 Length: 537 98.0 6.4E-06 4E-09 49.1 21.8 419 1-456 15-525 (537) 216 protein:vir:98506 Length: 555 98.0 6.5E-06 4.1E-09 49.0 38.3 430 1-456 1-540 (555) 217 protein:vir:107822 Length: 555 98.0 6.5E-06 4.1E-09 49.0 38.3 430 1-456 1-540 (555) 218 protein:vir:107404 Length: 555 98.0 6.5E-06 4.1E-09 49.0 38.3 430 1-456 1-540 (555) 219 protein:vir:4194 Length: 540 # 97.9 1E-05 6.3E-09 48.0 26.7 392 1-456 6-463 (540) 220 protein:vir:103765 Length: 549 97.9 1.2E-05 7.3E-09 47.6 36.2 428 1-456 1-539 (549) 221 protein:vir:3361 Length: 535 # 97.9 1.4E-05 8.9E-09 47.1 36.4 435 1-456 1-521 (535) 222 protein:vir:78641 Length: 278 97.7 2.9E-05 1.8E-08 45.5 23.9 265 71-392 1-278 (278) 223 protein:vir:1538 Length: 535 # 97.7 2.9E-05 1.8E-08 45.4 36.3 435 1-456 1-518 (535) 224 protein:vir:77981 Length: 448 97.7 3.1E-05 1.9E-08 45.3 25.4 399 1-456 1-440 (448) 225 protein:vir:103177 Length: 533 97.6 3.5E-05 2.2E-08 45.0 21.6 420 1-456 19-514 (533) 226 protein:vir:10447 Length: 536 97.6 3.8E-05 2.4E-08 44.8 36.3 433 1-456 1-533 (536) 227 protein:vir:2198 Length: 536 # 97.5 5.1E-05 3.2E-08 44.1 36.5 433 1-456 1-533 (536) 228 protein:vir:8100 Length: 466 # 97.4 6.6E-05 4.1E-08 43.5 25.0 392 7-455 1-466 (466) 229 protein:vir:102668 Length: 547 97.4 7.4E-05 4.6E-08 43.2 36.0 425 4-456 1-544 (547) 230 protein:vir:94572 Length: 535 97.3 0.00011 6.9E-08 42.3 33.8 425 1-456 1-518 (535) 231 protein:vir:8317 Length: 409 # 97.2 0.00012 7.2E-08 42.1 25.4 358 7-447 1-409 (409) 232 protein:vir:104892 Length: 558 97.2 0.00013 7.9E-08 41.9 22.4 417 1-456 20-542 (558) 233 protein:vir:79511 Length: 448 97.1 0.00017 1.1E-07 41.3 27.3 390 1-456 1-440 (448) 234 protein:vir:100039 Length: 522 97.1 0.00019 1.2E-07 41.0 36.2 416 4-456 1-508 (522) 235 protein:vir:1661 Length: 378 # 97.1 0.00019 1.2E-07 41.0 24.2 345 21-456 1-377 (378) 236 protein:vir:8883 Length: 543 # 97.1 0.00019 1.2E-07 41.0 34.0 429 1-456 1-542 (543) 237 protein:vir:99672 Length: 532 97.0 0.00021 1.3E-07 40.8 30.8 427 1-456 1-532 (532) 238 protein:vir:95254 Length: 488 97.0 0.00024 1.5E-07 40.4 28.5 409 1-456 8-482 (488) 239 protein:vir:858 Length: 378 # 96.9 0.00025 1.5E-07 40.4 20.4 345 21-456 1-377 (378) 240 protein:vir:106999 Length: 564 96.9 0.00025 1.6E-07 40.3 20.5 426 1-456 20-534 (564) 241 protein:vir:1785 Length: 555 # 96.8 0.00035 2.2E-07 39.5 32.9 418 6-456 1-535 (555) 242 protein:vir:93867 Length: 378 96.8 0.00035 2.2E-07 39.5 23.5 345 21-456 1-378 (378) 243 protein:vir:94869 Length: 378 96.7 0.00037 2.3E-07 39.4 24.3 345 7-456 1-378 (378) 244 protein:vir:6896 Length: 523 # 96.6 0.00045 2.8E-07 38.9 18.7 424 1-454 12-523 (523) 245 protein:vir:98816 Length: 446 96.5 0.00054 3.3E-07 38.5 26.6 393 1-429 6-446 (446) 246 protein:vir:106282 Length: 521 96.5 0.00056 3.5E-07 38.4 18.6 428 1-454 1-521 (521) 247 protein:vir:100598 Length: 516 96.5 0.00057 3.5E-07 38.4 21.7 408 1-454 29-516 (516) 248 protein:vir:7208 Length: 524 # 96.5 0.00058 3.6E-07 38.3 20.8 402 1-454 29-524 (524) 249 protein:vir:103458 Length: 524 96.5 0.0006 3.7E-07 38.3 20.8 402 1-454 29-524 (524) 250 protein:vir:78161 Length: 355 96.4 0.00061 3.8E-07 38.2 21.4 296 116-456 1-326 (355) 251 protein:vir:94002 Length: 378 96.4 0.00064 4E-07 38.1 22.9 346 21-456 1-377 (378) 252 protein:vir:101189 Length: 516 96.4 0.0007 4.3E-07 37.9 20.5 401 1-454 27-516 (516) 253 protein:vir:101806 Length: 516 96.4 0.0007 4.3E-07 37.9 20.5 401 1-454 27-516 (516) 254 protein:vir:108215 Length: 469 96.3 0.00073 4.5E-07 37.8 31.2 406 1-456 1-447 (469) 255 protein:vir:81017 Length: 521 96.3 0.00078 4.8E-07 37.6 22.8 409 1-455 46-521 (521) 256 protein:vir:5665 Length: 511 # 96.1 0.001 6.3E-07 37.0 16.3 405 1-454 23-511 (511) 257 protein:vir:6596 Length: 521 # 96.0 0.0011 6.7E-07 36.9 22.7 409 1-455 41-521 (521) 258 protein:vir:98567 Length: 340 95.8 0.0014 9E-07 36.1 17.7 282 40-395 1-340 (340) 259 protein:vir:98265 Length: 524 95.8 0.0015 9.1E-07 36.1 21.6 402 1-454 46-524 (524) 260 protein:vir:5839 Length: 533 # 95.6 0.0018 1.1E-06 35.6 20.5 406 1-456 1-498 (533) 261 protein:vir:96988 Length: 516 95.4 0.0021 1.3E-06 35.3 30.7 412 1-456 5-510 (516) 262 protein:vir:78696 Length: 542 95.3 0.0023 1.4E-06 35.1 34.9 420 6-456 1-532 (542) 263 protein:vir:7017 Length: 515 # 95.2 0.0025 1.6E-06 34.8 34.2 410 1-456 1-513 (515) 264 protein:vir:3780 Length: 345 # 95.0 0.0029 1.8E-06 34.5 21.5 299 33-397 1-345 (345) 265 protein:vir:108049 Length: 524 95.0 0.003 1.9E-06 34.4 19.5 424 1-454 14-524 (524) 266 protein:vir:105641 Length: 516 94.6 0.0039 2.4E-06 33.8 33.9 412 1-456 1-510 (516) 267 protein:vir:1150 Length: 350 # 94.2 0.0051 3.1E-06 33.2 21.3 298 24-395 1-350 (350) 268 protein:vir:267 Length: 348 # 94.2 0.0051 3.2E-06 33.2 25.4 313 1-402 1-348 (348) 269 protein:vir:5691 Length: 344 # 93.7 0.0065 4E-06 32.6 20.9 292 1-397 1-344 (344) 270 protein:vir:78191 Length: 351 93.6 0.007 4.4E-06 32.4 23.2 303 1-399 31-351 (351) 271 protein:vir:2013 Length: 344 # 92.3 0.012 7.5E-06 31.1 20.4 292 1-397 1-344 (344) 272 protein:vir:103971 Length: 376 92.2 0.012 7.7E-06 31.0 24.2 302 1-405 56-376 (376) 273 protein:vir:103330 Length: 517 91.8 0.014 8.7E-06 30.8 34.9 420 1-456 3-517 (517) 274 protein:vir:79207 Length: 351 91.0 0.018 1.1E-05 30.2 23.4 303 1-405 31-351 (351) 275 protein:vir:6322 Length: 510 # 90.7 0.02 1.2E-05 29.9 34.3 413 10-456 1-507 (510) 276 protein:vir:78942 Length: 510 90.4 0.021 1.3E-05 29.8 34.7 413 10-456 1-507 (510) 277 protein:vir:79150 Length: 368 84.4 0.061 3.8E-05 27.3 19.9 314 17-408 1-368 (368) 278 protein:vir:100328 Length: 346 84.0 0.064 4E-05 27.1 21.8 298 1-397 24-346 (346) 279 protein:vir:6058 Length: 344 # 84.0 0.064 4E-05 27.1 22.6 295 1-396 1-344 (344) 280 protein:vir:78749 Length: 337 82.5 0.076 4.7E-05 26.7 24.6 296 1-395 1-337 (337) 281 protein:vir:3743 Length: 345 # 76.3 0.14 8.5E-05 25.3 24.9 302 1-393 23-345 (345) 282 protein:vir:98853 Length: 219 62.2 0.34 0.00021 23.2 14.7 184 154-396 1-219 (219) 283 protein:vir:4698 Length: 251 # 49.6 0.63 0.00039 21.7 18.0 240 7-306 1-251 (251) 284 protein:vir:80211 Length: 514 39.5 1 0.00063 20.5 33.7 424 1-456 1-510 (514) No 1 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=100.00 E-value=6.9e-114 Score=640.99 Aligned_cols=456 Identities=100% Similarity=1.500 Sum_probs=433.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) ||++||++++++|+.+|..+++|++++++||+|+|++++++++.+++++..++|+++|||++|||+.++|++|+||++++ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~ 80 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCC Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999987 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) ++|++....++++|++|+|+.++.++++++++||+||++||++++|.+++++++|++++++||+.+++++.+++++|++. T Consensus 81 ~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) T protein:vir:10 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) T ss_pred CCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEEEEec Confidence 77777788899999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~ 240 (456) ++...+..+|.++++.++.+.+......+........+.|......+|++++|||++++|++|+|+|+++++|||+||++ T Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~liDa~~~~ 240 (456) T protein:vir:10 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) T ss_pred CCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHHHHHHHH Confidence 99999999999988888877655544555555566677888888999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLS 320 (456) Q Consensus 241 ~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 320 (456) +|++++.++++++|+++++|...+.+..+++|+++.....+....+.+|.+++++++++++++++++|+++++.++++|+ T Consensus 241 ~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~ 320 (456) T protein:vir:10 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLS 320 (456) T ss_pred HHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCCcceEEecccChhHHHHHHHHHHHHHH Confidence 99999999999999999999998888889999999888889999999999999999999999999999999999999999 Q ss_pred hhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHH Q lcl|Aclame:pro 321 SATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) Q Consensus 321 ~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad 400 (456) +++++|++.|+++++|+||+||++++.+|++||+.+++.|+++|++++++++++.|..+..+++++|+++.|+|.++.|| T Consensus 321 ~~s~~p~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~~ad 400 (456) T protein:vir:10 321 SATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) T ss_pred hccCCChHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEecCCCCcCHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999 Q ss_pred HHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 401 AASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 401 ~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +++||+++|++|++++++++||+++++++++++|++++..++++++.+.|+++||| T Consensus 401 a~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~~~~~~~~~~~~~~~~~ 456 (456) T protein:vir:10 401 AASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) T ss_pred HHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=100.00 E-value=6.9e-114 Score=640.99 Aligned_cols=456 Identities=100% Similarity=1.500 Sum_probs=433.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) ||++||++++++|+.+|..+++|++++++||+|+|++++++++.+++++..++|+++|||++|||+.++|++|+||++++ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~ 80 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCC Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999987 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) ++|++....++++|++|+|+.++.++++++++||+||++||++++|.+++++++|++++++||+.+++++.+++++|++. T Consensus 81 ~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) T protein:vir:10 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) T ss_pred CCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEEEEec Confidence 77777788899999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~ 240 (456) ++...+..+|.++++.++.+.+......+........+.|......+|++++|||++++|++|+|+|+++++|||+||++ T Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~liDa~~~~ 240 (456) T protein:vir:10 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) T ss_pred CCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHHHHHHHH Confidence 99999999999988888877655544555555566677888888999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLS 320 (456) Q Consensus 241 ~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 320 (456) +|++++.++++++|+++++|...+.+..+++|+++.....+....+.+|.+++++++++++++++++|+++++.++++|+ T Consensus 241 ~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~ 320 (456) T protein:vir:10 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLS 320 (456) T ss_pred HHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCCcceEEecccChhHHHHHHHHHHHHHH Confidence 99999999999999999999998888889999999888889999999999999999999999999999999999999999 Q ss_pred hhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHH Q lcl|Aclame:pro 321 SATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) Q Consensus 321 ~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad 400 (456) +++++|++.|+++++|+||+||++++.+|++||+.+++.|+++|++++++++++.|..+..+++++|+++.|+|.++.|| T Consensus 321 ~~s~~p~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~~~ad 400 (456) T protein:vir:10 321 SATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) T ss_pred hccCCChHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccceeEEecCCCCcCHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999 Q ss_pred HHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 401 AASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 401 ~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +++||+++|++|++++++++||+++++++++++|++++..++++++.+.|+++||| T Consensus 401 a~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~~~~~~~~~~~~~~~~~ 456 (456) T protein:vir:10 401 AASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) T ss_pred HHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=100.00 E-value=1.4e-111 Score=628.39 Aligned_cols=456 Identities=99% Similarity=1.490 Sum_probs=434.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) |+++||++++++|+++|..+++||+++++||+|+|+|++.+++.+++++..++++++||+++|||+.++|++|+||+++. T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~ 80 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCcccChhhchhhhhhhcchHHHHHHHHHhhhccCCeecCC Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999988 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) .+|++....++++|++|+|+.++.++++++++||+||+++|++++|.+++++++|++++++||+...+++.+++++|.+. T Consensus 81 ~~d~~~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~ 160 (456) T protein:vir:79 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRSAMRWWRDL 160 (456) T ss_pred CCCccHHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEeccceeEEEEcCCCCCceEEEEEEEEec Confidence 77888888899999999999999999999999999999999999999999999999999999999999999999999998 Q ss_pred CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~ 240 (456) ++...+.++|+++.++++++.+......+........+.+......+|++++||+++++|++|+|+|+++++|||+||++ T Consensus 161 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v~~liD~~~~~ 240 (456) T protein:vir:79 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) T ss_pred CCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhhHHHHHHHHHH Confidence 98899999999999999887765555555555566667788888899999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLS 320 (456) Q Consensus 241 ~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 320 (456) +|++++.++++++|+++++|...+.+..+++|+++.....+....+.+|.++++++++|++++++++|.++++.++++|+ T Consensus 241 ~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~ 320 (456) T protein:vir:79 241 ELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDYASIFEAAPGALWELPPGVDIWESQTNDFTPMLSAIKEHIRQLS 320 (456) T ss_pred HHHHHHHHHHHhhHHHHHhcCCcccccccccccccchhhhhhhhccccccCCCCcceeeecccChHHHHHHHHHHHHHHH Confidence 99999999999999999999999888899999998888889999999999999999999999999999999999999999 Q ss_pred hhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHH Q lcl|Aclame:pro 321 SATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) Q Consensus 321 ~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad 400 (456) +.+++|++.|+++++|+||+||++++.+|++||+.+++.|+++|++++++++++.|..+..+++++|+++.++|+++.|| T Consensus 321 ~~t~~p~~~~~~~~~N~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~w~~~~~~s~~~~ad 400 (456) T protein:vir:79 321 SATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) T ss_pred hhcCCChhHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEeCCCCCcCHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999 Q ss_pred HHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 401 AASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 401 ~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +++||+++|++|++++++++|++++++++++++|++++.+++++++++.|+++||+ T Consensus 401 a~~kl~~~G~~~~~~~~~~lg~~~~~i~~~e~~r~~~e~~~~~~~~~~~~~~~~~~ 456 (456) T protein:vir:79 401 AASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) T ss_pred HHHHHHhcCCChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhhHhhcCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999 No 4 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=100.00 E-value=3.3e-91 Score=516.65 Aligned_cols=431 Identities=17% Similarity=0.174 Sum_probs=360.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) -+++||+++++.|++++..+.+|++++.+||+|+|++++.++..+++++. .++++|||++|||++++|++++||++.+ T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~rl~~l~~Yy~G~~~i~~~~~~~~~~~~~--~~~~~n~~~~ivd~~~~~l~~~g~~~~~ 85 (484) T protein:vir:77 8 QENVDPEKAREEMLNLFTERTQDLGDNTAYYESERRPDAVGVTVPQQMQK--LLAHVGYPRLYIDAIAARQELEGFRLGG 85 (484) T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccccchhHHh--hhhhcCcHHHHHHHHHhhhccCceecCC Confidence 44888999999999999999999999999999999999999888887764 3588999999999999999999999754 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc--------eEEEEEccceEEEEeeCCCCceeEE Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT--------ATITADSPETMVVSVDPLQPWRIRA 152 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~--------~~i~~~~p~~~~~i~d~~~~~~~~~ 152 (456) +.+....++++|++|+|+.++.++++++++||+||++||++++|. ++|++++|++++++||+.++ ++.+ T Consensus 86 --~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~-~~~~ 162 (484) T protein:vir:77 86 --ADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPPTNLYAQIDPRTR-QVMR 162 (484) T ss_pred --cchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEeccceeEEEecCCCC-ceEE Confidence 344567899999999999999999999999999999999998875 47999999999999998765 5777 Q ss_pred EEEEEEec-CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC------CCCc Q lcl|Aclame:pro 153 AMRWWRDL-DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGMG 225 (456) Q Consensus 153 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~s 225 (456) ++++|.+. ++...++++|+++.++++.+. .+.|......+|.+|+|||++|.|. +|.| T Consensus 163 a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~vPvv~f~N~~~~~~~~G~s 227 (484) T protein:vir:77 163 AIRAIEDEEGNEVIGATLYLPNNTVIWNRE---------------DGQWVQVANVAHNLEMVPVIPIPNRTRLSDLYGTT 227 (484) T ss_pred EEEEEEeecCCcEEEEEEEecCeEEEEEec---------------CCceEeeccccCCCCCcceEEeccccccCccCCcc Confidence 77777654 455678899999999888653 2345556677899999999988764 5789 Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc-cchhhhhhhhhhhhhccceeecC-CCcceeeccc Q lcl|Aclame:pro 226 EVE-PHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD-ENGNAIDYASIFEAAPGALWELP-PGVDIWESQA 302 (456) Q Consensus 226 ~~~-~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 302 (456) +|+ .|++|+|+||+++|++++.++++++|+++++|...+.+..+ ++|. ..+....+++|..+ ++++++++++ T Consensus 228 ~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~q~~~ 302 (484) T protein:vir:77 228 EITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVKGEELGVDPETGQ-----TLFDAYLARILAFEDHESKAQQFSA 302 (484) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCCcchhcccccccc-----hhhhhhhhhhcccCCCCceeEeecC Confidence 997 58999999999999999999999999999999877655433 2332 34566777888766 6899999999 Q ss_pred cchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--- Q lcl|Aclame:pro 303 NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES--- 378 (456) Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~--- 378 (456) +++++|+++++.++++|++.+++|+++||+.+.| +||+||++++.+|++||+.+++.|+++|++++++++++.+.. T Consensus 303 ~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~l~~~~~~~~~~~ 382 (484) T protein:vir:77 303 AELRNFVDALDALDRKAAAYTGLPPYYLSFSSENPASAEAIRSSESRLVKTVERKNKIFGGAWEQAMRVAYKVMNGGDIP 382 (484) T ss_pred CChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc Confidence 9999999999999999999999999999988878 599999999999999999999999999999999999987642 Q ss_pred -ccccceEEecCCCCCCHHHHHHHHHHHHhcC--CCcHHHHHHhCCCCccHHHHHHHHHHHHHHHH---HhhcccccccC Q lcl|Aclame:pro 379 -VEDTVDVSFESPDRVTLGEKYSAASLAKAAG--ESWASIRRNILNYNADQIKQDDLDRAREQITL---FAGNPVQRPQE 452 (456) Q Consensus 379 -~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g--~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~---~~~~~~~~~~~ 452 (456) +..+++++|+++.++|.++.||+++||+++| ++|++|+++++||++++++++++.++++.... +.......++. T Consensus 383 ~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~~~~~~~~~~~~~~ 462 (484) T protein:vir:77 383 PEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQAQGLGLMGTMFGTDPSG 462 (484) T ss_pred cccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhccccccC Confidence 3357899999999999999999999999875 89999999999999998888776555443222 11111111111 Q ss_pred CCCC Q lcl|Aclame:pro 453 DGSR 456 (456) Q Consensus 453 ~Gs~ 456 (456) .|+- T Consensus 463 ~~~~ 466 (484) T protein:vir:77 463 GGNP 466 (484) T ss_pred CCCC Confidence 1111 No 5 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=100.00 E-value=6.5e-91 Score=515.01 Aligned_cols=432 Identities=19% Similarity=0.194 Sum_probs=359.1 Q ss_pred CC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MT--------ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~--------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) || ++++..+++.|+++|..+++||+++++||+|+|+++++++..++.+++ .++++|||++|||+.++||+ T Consensus 1 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~--~~~~~n~~~~ivd~~~~~l~ 78 (485) T protein:vir:10 1 MTAPLPGQEEIEDPAIARDEMVSAFEDSTQNLKTNTSYYEAERRPEAIGVTVPIQMQS--LLAHVGYPRLYVDSIAERQA 78 (485) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCCChhhhh--hhhhcCcHHHHHHHHHhhhc Confidence 33 788999999999999999999999999999999999999999888764 35778999999999999999 Q ss_pred cCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC--------CCceEEEEEccceEEEEeeC Q lcl|Aclame:pro 73 PNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD--------DGTATITADSPETMVVSVDP 144 (456) Q Consensus 73 g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~--------~g~~~i~~~~p~~~~~i~d~ 144 (456) ++||+..+ +++....++++|++|+|+.++.++++++++||+||++||+++ ++.++|++++|++++++||+ T Consensus 79 ~~g~~~~~--~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~~D~ 156 (485) T protein:vir:10 79 VEGFRFGD--ADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAEIDP 156 (485) T ss_pred ccceecCC--CchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEEEcC Confidence 99998643 445567899999999999999999999999999999999985 46778999999999999998 Q ss_pred CCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC--- Q lcl|Aclame:pro 145 LQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP--- 221 (456) Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~--- 221 (456) .+++...++++++.+.++..+++.+|+++.+++|.... +.|......+|.+++|||++|.|. T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~vPvv~~~n~~~~ 221 (485) T protein:vir:10 157 RIGRVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYRVE---------------NEWQEWFNNPHGLGVVPVVPIPNRTRL 221 (485) T ss_pred CCCceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEEcC---------------CceEEeccccCCCCcccEEEecccccc Confidence 88776655555555555667789999999999987532 344445567899999999998764 Q ss_pred ---CCCchHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccc-ccchhhhhhhhhhhhhccceeecC-CCc Q lcl|Aclame:pro 222 ---DGMGEVEP-HIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNV-DENGNAIDYASIFEAAPGALWELP-PGV 295 (456) Q Consensus 222 ---~~~s~~~~-v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~-d~~g~~~~~~~~~~~~~~~~~~~~-~~~ 295 (456) +|+|+|++ |++|||+||+++|++++++++|++|+++++|.....+.. +++|. ..+....+.+|..+ +++ T Consensus 222 ~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~d~ 296 (485) T protein:vir:10 222 SDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQ-----TLFDAYLARILAFEDAEG 296 (485) T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCcccccccccccc-----hhhhhcccceeccCCCCc Confidence 57899975 899999999999999999999999999999987765543 23333 34566778888865 789 Q ss_pred ceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 296 DIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQI 374 (456) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~ 374 (456) +++|++++++++|+++++.++++|++++++|++.|++.+.| +||+||++++.+|++||+++++.|+.+|++++++++++ T Consensus 297 k~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l~~~~ 376 (485) T protein:vir:10 297 KIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNSIFGGAWEEAMRLAYRM 376 (485) T ss_pred eEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999987777 59999999999999999999999999999999999988 Q ss_pred cCC----CccccceEEecCCCCCCHHHHHHHHHHHHhcC--CCcHHHHHHhCCCCccHHHHHHHHHHHHHH---HHHhhc Q lcl|Aclame:pro 375 EGE----SVEDTVDVSFESPDRVTLGEKYSAASLAKAAG--ESWASIRRNILNYNADQIKQDDLDRAREQI---TLFAGN 445 (456) Q Consensus 375 ~g~----~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g--~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~---~~~~~~ 445 (456) .+. .+..+++|+|+++.|+|+++.||+++||+++| ++|++|+++++||++++++++++.++++.. .++... T Consensus 377 ~~~~~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~~~~~ee~~~~~~~~~~~~ 456 (485) T protein:vir:10 377 MKGGDVPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLIGTM 456 (485) T ss_pred hCCCCCcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHHHHHHHHHHHHHHHHHHHh Confidence 653 23457899999999999999999999999876 899999999999999988877654443322 111111 Q ss_pred ccccccCCCCC Q lcl|Aclame:pro 446 PVQRPQEDGSR 456 (456) Q Consensus 446 ~~~~~~~~Gs~ 456 (456) ..+.+..+|+. T Consensus 457 ~~~~~~~~~~~ 467 (485) T protein:vir:10 457 VDPNPTVPGSP 467 (485) T ss_pred hccCCCCCCCC Confidence 11111111111 No 6 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=100.00 E-value=4.1e-90 Score=510.64 Aligned_cols=431 Identities=18% Similarity=0.197 Sum_probs=355.3 Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MT-ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~-~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) |+ ++++.++++.|+++|..+.+|++++.+||+|+|+|++++...++++++. ++++|||++|||+.++||++.||++. T Consensus 8 ~~e~~~~~~~~~~l~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~~~~~~~~--~~v~n~~~~iVd~~~~~l~~~g~~~~ 85 (486) T protein:vir:42 8 MEEIEDPAVVREEMISAFEDASKDLASNTSYYDAERRPEAIGVTVPREMQQL--LAHVGYPRLYVDSVAERQAVEGFRLG 85 (486) T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhcccccchhHhhh--hhccchHHHHHHHHHhhhcccceecC Confidence 33 6777889999999999999999999999999999999988888877643 58899999999999999999999875 Q ss_pred CCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC--------CCceEEEEEccceEEEEeeCCCCceeE Q lcl|Aclame:pro 80 GSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD--------DGTATITADSPETMVVSVDPLQPWRIR 151 (456) Q Consensus 80 ~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~--------~g~~~i~~~~p~~~~~i~d~~~~~~~~ 151 (456) + +++....++++|++|+|+.++.++++++++||+||++||+++ ++.+++++++|++++++||+..+ ++. T Consensus 86 ~--~~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i~d~~~~-~~~ 162 (486) T protein:vir:42 86 D--ADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAEIDPRIN-RVS 162 (486) T ss_pred C--CchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEEEeCCCC-CeE Confidence 4 334456799999999999999999999999999999999875 55679999999999999998766 566 Q ss_pred EEEEEEEecC-CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC------CCC Q lcl|Aclame:pro 152 AAMRWWRDLD-AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGM 224 (456) Q Consensus 152 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~ 224 (456) +++++|++.+ +..+++.+|+++.+++|.... +.|......+|.+++|||++|.|. +|. T Consensus 163 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~---------------~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~ 227 (486) T protein:vir:42 163 KAIRVAYDKEGNEIQAATLYTPMETIGWFRAD---------------GEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGT 227 (486) T ss_pred EEEEEEEecCCCeEEEEEEEcCCcEEEEEecC---------------CcEEeecceecCCCCceEEEeccccccCCCCCc Confidence 7777766544 445678899999999986532 344555667899999999988764 578 Q ss_pred chHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc-cchhhhhhhhhhhhhccceeecC-CCcceeecc Q lcl|Aclame:pro 225 GEVEP-HIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD-ENGNAIDYASIFEAAPGALWELP-PGVDIWESQ 301 (456) Q Consensus 225 s~~~~-v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 301 (456) |+|++ |++|||+||+++|++++.++++++|+++++|.+...+..+ +++. ..+....+++|..+ ++++++|++ T Consensus 228 s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~q~~ 302 (486) T protein:vir:42 228 SEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDSETGQ-----TLFDAYLARILAFEDAEGKIQQFS 302 (486) T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCcccccccccccc-----chhhhhhchhcccCCCCceEEeec Confidence 99985 8899999999999999999999999999999887665433 2232 34566778887764 789999999 Q ss_pred ccchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--- Q lcl|Aclame:pro 302 ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE--- 377 (456) Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~--- 377 (456) ++++++|+++++.++++|++.+++|++.|++.+.| +||+||++++.+|++||+++++.|+++|++++++++++.+. T Consensus 303 ~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~ 382 (486) T protein:vir:42 303 AAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMKGGDV 382 (486) T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Confidence 99999999999999999999999999999988777 59999999999999999999999999999999999998753 Q ss_pred -CccccceEEecCCCCCCHHHHHHHHHHHHhc--CCCcHHHHHHhCCCCccHHHHHHHHHHHHH---H---HHHhhcccc Q lcl|Aclame:pro 378 -SVEDTVDVSFESPDRVTLGEKYSAASLAKAA--GESWASIRRNILNYNADQIKQDDLDRAREQ---I---TLFAGNPVQ 448 (456) Q Consensus 378 -~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~--g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~---~---~~~~~~~~~ 448 (456) .+..+++++|+++.|+|+++.||+++||+++ |++|++|+++++||++++++++++.++++. . +.+.+.... T Consensus 383 ~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e~~~~~~e~~~~~~~~~~~~~~~~~~ 462 (486) T protein:vir:42 383 PPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREEMRRWDEEEAAMGLGLLGTMVDADPT 462 (486) T ss_pred cccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCC Confidence 2346789999999999999999999999876 789999999999999998887765433321 1 111111110 Q ss_pred cc-cCCC----CC Q lcl|Aclame:pro 449 RP-QEDG----SR 456 (456) Q Consensus 449 ~~-~~~G----s~ 456 (456) .+ ++.+ +. T Consensus 463 ~~~~~~~~~~~~~ 475 (486) T protein:vir:42 463 VPGSPSPTAPPKP 475 (486) T ss_pred CCCCCCCCCCCCC Confidence 00 0000 00 No 7 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=100.00 E-value=3.1e-90 Score=511.32 Aligned_cols=438 Identities=16% Similarity=0.182 Sum_probs=358.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) |++..-.++++.|+.+|..+++|++++++||+|+|+++.++++.+++++..++++++|||++|||+.++|++++||+..+ T Consensus 23 ~~~~~~~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~~~~~~~~~~~~~~~~~~~v~n~~~~ivd~~a~~l~~~gf~~~d 102 (501) T protein:vir:25 23 MSREQLGALVADMWRLHISERQWLDRIYEYTKGLRGRPEVPEGASDEVKELAKLSVKNVLSLVRDSFAQNLSVVGYRNAL 102 (501) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhccccCChhhhhhHhhhhcChHHHHHHHHHhhhcccceecCC Confidence 56555667888999999999999999999999999999999999999999888899999999999999999999998754 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEe-eCCCCceeEEEEEEEEe Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSV-DPLQPWRIRAAMRWWRD 159 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~-d~~~~~~~~~~i~~~~~ 159 (456) . +..+.++++|++|+|+.++.++++++++||+||++||.+++| ++|++++|++|+++| |+.+++.+.+++++|.. T Consensus 103 ~---~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de~~-~~i~~~sp~~~~~iy~D~~~~~~~~~ai~~~~~ 178 (501) T protein:vir:25 103 A---KENDPAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTDEG-PVFRTRSPRQILAVYADPSVDAWPQYALETWVA 178 (501) T ss_pred c---cchHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCC-CeEEEeccccEEEEEecCCCCcceeEEEEEEee Confidence 3 335578999999999999999999999999999999999988 689999999999999 56777789999998876 Q ss_pred cC--CceeEEEEEeCCeEEEEEEcccccccccc--eeec----cCCCcccccccccccCceeEEEEecC-----CCCCch Q lcl|Aclame:pro 160 LD--AESDFAIVWSGDGWQKFARPCFVQSSSRR--RLVT----RISDSWVPVGDAVVTGSPPPVVVYQN-----PDGMGE 226 (456) Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~pv~~~~n-----~~~~s~ 226 (456) .. +...++++|++..++++............ +... ............+|.+++|||++|.| .+|+|+ T Consensus 179 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~~~~~~~g~sd 258 (501) T protein:vir:25 179 QKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNGRDADDMIVGE 258 (501) T ss_pred ccccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCccccCccccch Confidence 54 34567889999888887544321111110 0000 00111122345678999999999866 458899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecC-CCcceeeccccch Q lcl|Aclame:pro 227 VEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELP-PGVDIWESQANDF 305 (456) Q Consensus 227 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 305 (456) |+++++|+|+||+++|++++.++++++|+++++|.....+ ..+....+++|..+ +++++++++++++ T Consensus 259 ie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~------------~~~~~~~~~i~~~~~~~~~~~q~~~~~~ 326 (501) T protein:vir:25 259 VAPLILLQQAINSVNFDRLIVSRFGANPQRVISGWTGSKA------------EVLKASALRVWTFEDPEVKAQAFPPASV 326 (501) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhCCCCCcc------------chhhhcccceeccCCCCceEEEecccCh Confidence 9999999999999999999999999999999999865432 23556677888875 6889999999999 Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---ccc Q lcl|Aclame:pro 306 TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV---EDT 382 (456) Q Consensus 306 ~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~---~~~ 382 (456) ++|+++++.++++||++|++|+++|++.++|+||+||++++.+|.++|+++++.|+++|++++++++++.|... ..+ T Consensus 327 ~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~~~~~~~~~~~~~ 406 (501) T protein:vir:25 327 EPYNLILEEMLQHVAMVAQISPAQVTGKMINVSAEALAAAEANQQRKLAAKRESFGESWEQLLRLAAEMDDDPDTAADSG 406 (501) T ss_pred HHHHHHHHHHHHHHHhhcCCChhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccee Confidence 99999999999999999999999999999999999999999999999999999999999999999999988543 357 Q ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHh-CCCCccHHHHHHHHHHHHHHHHHhhcc-ccccc--------- Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNI-LNYNADQIKQDDLDRAREQITLFAGNP-VQRPQ--------- 451 (456) Q Consensus 383 i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~-~~~~~~~~~~~e~~~~~e~~~~~~~~~-~~~~~--------- 451 (456) ++++|+++.|+|.++.||+++||+++|+ |.+|++++ +|++++++++++.+++++....+.+.+ ...+. T Consensus 407 i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et~~~~~~g~~~~~ie~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (501) T protein:vir:25 407 AEVLWRDTEARSFGAVVDGITKLASAGI-PIEHLLSMVPGMTQQTIQAIKDSLRGGEVKSLVDKLLSNEPAPVPPPPPQA 485 (501) T ss_pred eeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHhhccCcCCCCCCCCCC Confidence 8999999999999999999999999886 77777764 688887877776665555443222211 11111 Q ss_pred ------------CCCC Q lcl|Aclame:pro 452 ------------EDGS 455 (456) Q Consensus 452 ------------~~Gs 455 (456) .+|| T Consensus 486 ~~~~~~~~~~~~~~g~ 501 (501) T protein:vir:25 486 AAQALNEGGVNGNGGA 501 (501) T ss_pred CccccccccCCCCCCC Confidence 1111 No 8 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=100.00 E-value=1.5e-89 Score=507.60 Aligned_cols=432 Identities=21% Similarity=0.223 Sum_probs=359.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCc Q lcl|Aclame:pro 3 ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA 82 (456) Q Consensus 3 ~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~ 82 (456) =.||.++|+.|+++|..+++|++++++||+|+|++++.++..++.++ ++++++||+++|||+.++|++++||+.+. T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~--~~~~~~n~~~~ivd~~~~~l~~~g~~~~~-- 76 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELA--YLDVQPGWVATYLRTLSDRLDIEGFRISE-- 76 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHh--hhhhhcchHHHHHHHHHhhhccCceecCC-- Confidence 45899999999999999999999999999999999999888888765 44789999999999999999999998653 Q ss_pred cccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEe------CCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 83 DSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWR------RDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 83 d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~------~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) |.+..+.++++|++|+|+.++.+++++++++|+||++||+ +++|.+++++++|.+++++||+...+++.+++++ T Consensus 77 d~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p~~~~~~~D~~~~~~~~~~i~~ 156 (480) T protein:vir:78 77 DSEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESPLYMYAELDPRNTRRVTRAVRL 156 (480) T ss_pred CchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcccceEEEEcCCCccceEEEEEE Confidence 5556778999999999999999999999999999999997 4578899999999999999999988999999999 Q ss_pred EEecC--CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccc-ccccccccCceeEEEEecCC------CCCchH Q lcl|Aclame:pro 157 WRDLD--AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWV-PVGDAVVTGSPPPVVVYQNP------DGMGEV 227 (456) Q Consensus 157 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pv~~~~n~------~~~s~~ 227 (456) |...+ +...++++|+++.+++|....... ..|. .....+|.+++|||++|.|. +|.|+| T Consensus 157 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i 224 (480) T protein:vir:78 157 YTTRDDVAVPDRATLYLPDETVPLRRNGGLN------------DQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEI 224 (480) T ss_pred EEeecCCCceEEEEEEeCCeEEEEEecCCCc------------cccccccccccCCCCCcceEEeecccccCCccCcccc Confidence 86543 456778999999999887543211 1111 12346799999999988653 678999 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeec-CCCcceeeccccch Q lcl|Aclame:pro 228 EP-HIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWEL-PPGVDIWESQANDF 305 (456) Q Consensus 228 ~~-v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 305 (456) ++ |++|+|+||+++|++++.+++|++|+++++|.+.+.+..+..+. .+....+.++.. ++++++++++.+++ T Consensus 225 ~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (480) T protein:vir:78 225 SPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENT------TLDIYYGRILTLASEAAKISEFKAAEL 298 (480) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcCCccccccccccc------hhhhhhhhhccCCCCCceEEecCccCH Confidence 85 89999999999999999999999999999998877665443332 244556666665 46789999999999 Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---Cccc Q lcl|Aclame:pro 306 TPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE---SVED 381 (456) Q Consensus 306 ~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~---~~~~ 381 (456) ++|++.++.++++|++.+++|+..||+.+.| +||+||++++.+|+.||+++++.|+++|++++++++++.|. .+.. T Consensus 299 ~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Alk~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~~~~~~~ 378 (480) T protein:vir:78 299 RNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYT 378 (480) T ss_pred HHHHHHHHHHHHHHhcccCCChHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccce Confidence 9999999999999999999999999988877 59999999999999999999999999999999999999874 3345 Q ss_pred cceEEecCCCCCCHHHHHHHHHHHHhcC--CCcHHHHHHhCCCCccHHHHHHHHHHHHHHH---HHhhccccc------c Q lcl|Aclame:pro 382 TVDVSFESPDRVTLGEKYSAASLAKAAG--ESWASIRRNILNYNADQIKQDDLDRAREQIT---LFAGNPVQR------P 450 (456) Q Consensus 382 ~i~v~f~~~~~~~~~e~ad~~~kl~~~g--~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~---~~~~~~~~~------~ 450 (456) .++++|+++.++|+++.+|+++||+++| ++|++|+++.+||+++++++++.+++++... .+.....+. | T Consensus 379 ~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 458 (480) T protein:vir:78 379 RLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKP 458 (480) T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC Confidence 7899999999999999999999999865 7899999999999999998887654444322 222111111 1 Q ss_pred cCCCCC Q lcl|Aclame:pro 451 QEDGSR 456 (456) Q Consensus 451 ~~~Gs~ 456 (456) +.+.+. T Consensus 459 ~~~~~~ 464 (480) T protein:vir:78 459 TVTETK 464 (480) T ss_pred CCCCCC Confidence 111111 No 9 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=100.00 E-value=2.9e-89 Score=505.99 Aligned_cols=433 Identities=18% Similarity=0.179 Sum_probs=356.4 Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcc Q lcl|Aclame:pro 1 MT---ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGIT 77 (456) Q Consensus 1 ~~---~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~ 77 (456) |. .++++++++.|+.+|..+++|++++++||+|+|++++.++..++.++ ++++++|||++|||+.++||+.+||+ T Consensus 1 ~~~~~~~d~~~~i~~L~~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~--~~~~~~n~~~~ivd~~a~~l~~~Gf~ 78 (488) T protein:vir:23 1 MAETESIDPEKLRDQLLDAFENKQNELKSSKAYYDAERRPDAIGLAVPLDMR--KYLAHVGYPRTYVDAIAERQELEGFR 78 (488) T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcCcccchhhh--hhhhhcchHHHHHHHHHHhhhcccee Confidence 65 67789999999999999999999999999999999999998888775 45789999999999999999999887 Q ss_pred cCC--------CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC--------CCCceEEEEEccceEEEE Q lcl|Aclame:pro 78 VGG--------SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR--------DDGTATITADSPETMVVS 141 (456) Q Consensus 78 ~~~--------~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~--------~~g~~~i~~~~p~~~~~i 141 (456) +.. ..|++....++++|++|+|+.++.++++++++||+||++||++ +++.++|++++|++++++ T Consensus 79 ~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~~ 158 (488) T protein:vir:23 79 IPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEVPLIRVEPPTALYAE 158 (488) T ss_pred ccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCcceEEEeccceeEEE Confidence 642 2455667789999999999999999999999999999999874 466789999999999999 Q ss_pred eeCCCCceeEEEEEEEE-ecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC Q lcl|Aclame:pro 142 VDPLQPWRIRAAMRWWR-DLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN 220 (456) Q Consensus 142 ~d~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n 220 (456) ||+.+++. .+++++|+ ..++...+..+|+++.+++|.... +.|......+|.+++|||++|.| T Consensus 159 ~d~~~~~~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~---------------~~~~~~~~~~h~~g~vPvv~f~n 222 (488) T protein:vir:23 159 VDPRTRKV-LYAIRAIYGADGNEIVSATLYLPDTTMTWLRAE---------------GEWEAPTSTPHGLEMVPVIPISN 222 (488) T ss_pred EecCCCce-EEEEEEEEecCCCcEEEEEEEecCcEEEEEecC---------------CceEeccccccCCCCcceEEecc Confidence 99887764 55555554 444556778899999999886532 34555567789999999998865 Q ss_pred C------CCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc-cchhhhhhhhhhhhhccceeecC Q lcl|Aclame:pro 221 P------DGMGEVE-PHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD-ENGNAIDYASIFEAAPGALWELP 292 (456) Q Consensus 221 ~------~~~s~~~-~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~~~ 292 (456) . +|.|+|+ .|++|+|+||+++|++++.+++|++|+++++|.....+..+ +++ ...+....+++|.++ T Consensus 223 ~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~ 297 (488) T protein:vir:23 223 RTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLIFGAKPEELGINAETG-----QRMFDAYMARILAFE 297 (488) T ss_pred ccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCCCccccccccccc-----chhhhhhhhhhccCC Confidence 3 5789997 58999999999999999999999999999999877655432 222 245677788888876 Q ss_pred CC--cceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 PG--VDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILV 369 (456) Q Consensus 293 ~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~ 369 (456) ++ +++++++++++++|+++++.++++|++.+++|++.|++.+.| +||+||++++.+|++||+.+++.|+.+|+++++ T Consensus 298 ~g~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~ 377 (488) T protein:vir:23 298 GGEGAHAEQFSAAELRNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAESRLVKKVERKNKIFGGAWEQAMR 377 (488) T ss_pred CCCCceeEecCCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 54 678999999999999999999999999999999999987777 599999999999999999999999999999999 Q ss_pred HHHHhcCCC----ccccceEEecCCCCCCHHHHHHHHHHHHhcC--CCcHHHHHHhCCCCccHHHHHHHHHHHHH----- Q lcl|Aclame:pro 370 KALQIEGES----VEDTVDVSFESPDRVTLGEKYSAASLAKAAG--ESWASIRRNILNYNADQIKQDDLDRAREQ----- 438 (456) Q Consensus 370 l~~~~~g~~----~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g--~~s~~t~~~~~~~~~~~~~~~e~~~~~e~----- 438 (456) +++++.+.. +..+++++|+++.|+|+++.+|+++||+++| ++|++|+++++||++++++++++.++++. T Consensus 378 l~~~~~~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~~~~~~~~~~~~~~~ 457 (488) T protein:vir:23 378 LAYKMVKGGDIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQMRQWLEQDQKQGLG 457 (488) T ss_pred HHHHHhcCCCcchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH Confidence 999887642 3457999999999999999999999999865 89999999999999998887765433322 Q ss_pred -HHHHhhcccc--ccc--CCCCC Q lcl|Aclame:pro 439 -ITLFAGNPVQ--RPQ--EDGSR 456 (456) Q Consensus 439 -~~~~~~~~~~--~~~--~~Gs~ 456 (456) ++++.....+ .++ +.|.. T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~ 480 (488) T protein:vir:23 458 LIGSLYGASTPEGKPGEAPVGEP 480 (488) T ss_pred HHHHHhccCCCcccCCCCCCCCC Confidence 1222111111 111 11112 No 10 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=100.00 E-value=1.7e-89 Score=507.20 Aligned_cols=432 Identities=18% Similarity=0.187 Sum_probs=356.6 Q ss_pred CC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MT--------ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~--------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) || .+-+..++..|+++|..+.+|++++.+||+|+|+|++.++..+++++ ++++++||+++|||+.++||+ T Consensus 1 ~~~~i~~~~~~~~~~~~~~~L~~~~~~~~~r~~~~~~YY~G~~~i~~~~~~~~~~~~--~~~~~~n~~~~ivd~~~~~l~ 78 (485) T protein:vir:24 1 MTAPLPGQEEIADPAIARDEMVSAFEDQNQNLRSNTSYYEAERRPEAIGVTVPVQMQ--SLLAHVGYPRLYVDSIAERQA 78 (485) T ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCcccchhhh--hhhhccchHHHHHHHHhhhhc Confidence 43 23445688899999999999999999999999999999998888775 446889999999999999999 Q ss_pred cCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCC--------CceEEEEEccceEEEEeeC Q lcl|Aclame:pro 73 PNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDD--------GTATITADSPETMVVSVDP 144 (456) Q Consensus 73 g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~--------g~~~i~~~~p~~~~~i~d~ 144 (456) ++||++.+ +.+....++++|++|+|+.++.++++++++||+||++||.+++ |.++|++++|++++++||+ T Consensus 79 ~~g~~~~~--~~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~ 156 (485) T protein:vir:24 79 VEGFRLGD--ADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDP 156 (485) T ss_pred cCceecCC--CchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeC Confidence 99998753 4445667999999999999999999999999999999999875 5568999999999999999 Q ss_pred CCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC--- Q lcl|Aclame:pro 145 LQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP--- 221 (456) Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~--- 221 (456) ..++...++.+++.+..+...++++|+++.+++|.... +.|......+|.++.||||+|.|. T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~---------------~~~~~~~~~~h~~g~vPvv~f~n~~~~ 221 (485) T protein:vir:24 157 RIGRPAKAIRVAYDAEGNEIQAATLYTPNETFGWFRAE---------------GEWVEWFSDPHGLGAVPVVPLPNRTRL 221 (485) T ss_pred CcCceeEEEEEEEeecCCeEEEEEEEcCCcEEEEEecC---------------CceEeecccccCCCcccEEEeccCccc Confidence 88766666666666666667789999999999886532 345555667899999999998764 Q ss_pred ---CCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc-cchhhhhhhhhhhhhccceeecC-CCc Q lcl|Aclame:pro 222 ---DGMGEVE-PHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD-ENGNAIDYASIFEAAPGALWELP-PGV 295 (456) Q Consensus 222 ---~~~s~~~-~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~~~ 295 (456) +|.|+|+ .|++|||+||+++|++++++++|++|+++++|.+...+..+ ++| ...+....+.+|..+ +++ T Consensus 222 ~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~ 296 (485) T protein:vir:24 222 SDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETG-----QTLFDAYLARILAFEDAEG 296 (485) T ss_pred CCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCccccccccccc-----cchhhhcccceeccCCCCc Confidence 6889997 58999999999999999999999999999999877655422 333 234667788888875 788 Q ss_pred ceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 296 DIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQI 374 (456) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~ 374 (456) ++++++++++++|+++++.++++|++.+++|++.|++.+.| +||+||++++.+|++||+++++.|+++|++++++++++ T Consensus 297 ~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~ 376 (485) T protein:vir:24 297 KIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRL 376 (485) T ss_pred eEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999988777 59999999999999999999999999999999999987 Q ss_pred cCC----CccccceEEecCCCCCCHHHHHHHHHHHHhcC--CCcHHHHHHhCCCCccHHHHHHHHHHHHHH------HHH Q lcl|Aclame:pro 375 EGE----SVEDTVDVSFESPDRVTLGEKYSAASLAKAAG--ESWASIRRNILNYNADQIKQDDLDRAREQI------TLF 442 (456) Q Consensus 375 ~g~----~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g--~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~------~~~ 442 (456) .+. .+..+++++|+++.|+|+++.||+++||+++| ++|++|+++++||++++++++++.++++.. +.+ T Consensus 377 ~~~~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e~~~~~ee~~~~~~~~~~~~ 456 (485) T protein:vir:24 377 MKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLLGTM 456 (485) T ss_pred hcCCCCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHHHHHHHHHHhhhhhhHHHhh Confidence 542 34457899999999999999999999999865 899999999999999988887765444322 122 Q ss_pred hhcccccc-cCCCCC Q lcl|Aclame:pro 443 AGNPVQRP-QEDGSR 456 (456) Q Consensus 443 ~~~~~~~~-~~~Gs~ 456 (456) .+.....+ +++++- T Consensus 457 ~~~~~~~~~~~~~~e 471 (485) T protein:vir:24 457 VDADPTVPGSPNPTP 471 (485) T ss_pred cccCCCCCCCCCCCC Confidence 11111111 111111 No 11 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=100.00 E-value=2.8e-89 Score=506.07 Aligned_cols=432 Identities=20% Similarity=0.214 Sum_probs=359.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCc Q lcl|Aclame:pro 3 ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA 82 (456) Q Consensus 3 ~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~ 82 (456) =.||.++|+.|+++|..+++|++++++||+|+|++++.+...+++++ ++++++|||++|||+.++||+++||+.+. T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~--~~~~~~n~~~~ivd~~~~~l~~~g~~~~~-- 76 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELA--YLDVQPGWVATYLRTLSDRLDIEGFRISE-- 76 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccccchhhh--hhhhhcchHHHHHHHHHhhhccCceecCC-- Confidence 34889999999999999999999999999999999999988888765 45689999999999999999999998643 Q ss_pred cccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEe------CCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 83 DSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWR------RDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 83 d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~------~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) |++....++++|++|+|+.++.+++++++++|+||++||+ +++|.+++++++|++++++||+...+++.+++++ T Consensus 77 d~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~~i~D~~~~~~~~~~i~~ 156 (480) T protein:vir:78 77 DSEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMYAELDPRNTRRVTRAVRL 156 (480) T ss_pred CchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceEEEEcCCCccceEEEEEE Confidence 4456778999999999999999999999999999999996 4688899999999999999999988899999999 Q ss_pred EEecC--CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccc-ccccccccCceeEEEEecCC------CCCchH Q lcl|Aclame:pro 157 WRDLD--AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWV-PVGDAVVTGSPPPVVVYQNP------DGMGEV 227 (456) Q Consensus 157 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pv~~~~n~------~~~s~~ 227 (456) |...+ +...++++|+++.+++|....... ..+. .....+|.+|+|||++|.|. +|.|+| T Consensus 157 ~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi 224 (480) T protein:vir:78 157 YTTRDDVAVPDRATLYLPDETVPLRRNGGLN------------DQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEI 224 (480) T ss_pred EEeecCCcceEEEEEEeCCeEEEEEecCCCc------------ccccccccccccCCCCcceEEeecccccCCccCccch Confidence 86544 345678999999999987543211 1111 23456799999999988653 578999 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecC-CCcceeeccccch Q lcl|Aclame:pro 228 EP-HIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELP-PGVDIWESQANDF 305 (456) Q Consensus 228 ~~-v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 305 (456) ++ |++|+|+||+++|++++.+++|++|+++++|.+.+.+..+..+.+ +....+.++..+ +++++++++++++ T Consensus 225 ~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (480) T protein:vir:78 225 SPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTT------LDIYYGRILTLASEAAKISEFKAAEL 298 (480) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhCCCccccccccccch------hhhhhhhhccCCCCCceEEecCccCH Confidence 75 899999999999999999999999999999988777655443332 344556666654 6789999999999 Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccc Q lcl|Aclame:pro 306 TPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES---VED 381 (456) Q Consensus 306 ~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~---~~~ 381 (456) ++|++.++.++++|++.+++|++.||+.+.| +||+||++++.+|+.||+++++.|+.+|++++++++++.|.. +.. T Consensus 299 ~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~~~~~~~ 378 (480) T protein:vir:78 299 RNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYT 378 (480) T ss_pred HHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccce Confidence 9999999999999999999999999988777 599999999999999999999999999999999999998753 345 Q ss_pred cceEEecCCCCCCHHHHHHHHHHHHhcC--CCcHHHHHHhCCCCccHHHHHHHHHHHHHH---HHHhhccccccc----- Q lcl|Aclame:pro 382 TVDVSFESPDRVTLGEKYSAASLAKAAG--ESWASIRRNILNYNADQIKQDDLDRAREQI---TLFAGNPVQRPQ----- 451 (456) Q Consensus 382 ~i~v~f~~~~~~~~~e~ad~~~kl~~~g--~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~---~~~~~~~~~~~~----- 451 (456) .++++|+++.++|+++.+|+++||+++| ++|++|+++++||+++++++++..++++.. +++.....+.+. T Consensus 379 ~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480) T protein:vir:78 379 RLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKP 458 (480) T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccCCCccccCC Confidence 7899999999999999999999999865 789999999999999998887654444332 222221111111 Q ss_pred CCC--CC Q lcl|Aclame:pro 452 EDG--SR 456 (456) Q Consensus 452 ~~G--s~ 456 (456) ..| .. T Consensus 459 ~~~~~~~ 465 (480) T protein:vir:78 459 TVTETKT 465 (480) T ss_pred CCCCCCC Confidence 111 11 No 12 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=100.00 E-value=6.4e-88 Score=498.62 Aligned_cols=432 Identities=14% Similarity=0.142 Sum_probs=348.4 Q ss_pred CCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 1 MTASTPAE--WLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 1 ~~~~t~~~--~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) ...+|+++ +++.|+.+|..+++||+++.+||+|+|++++++...++++++. ++++||+++|||++++++.++||+. T Consensus 15 ~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p~~~~~~--~~v~n~~~~iVd~~a~rl~~~Gf~~ 92 (504) T protein:vir:99 15 IPELNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIPPEYLRT--ATVLGWSAKAVDTLARRCNLESFVW 92 (504) T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccchhccccccHHHHHH--hhccCcHHHHHHHHHhhhccceeeC Confidence 44455544 8999999999999999999999999999999999999988643 5889999999999999999999987 Q ss_pred CCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce--EEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 79 GGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA--TITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 79 ~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~--~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) .+. .+....+|++|++|+|+.++.++++++++|||||++||++++|++ +|++++|++++++||+.+++...++.++ T Consensus 93 ~d~--~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~~iyD~~~~~~~~a~~~~ 170 (504) T protein:vir:99 93 PDG--DYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQATGEWNSRRNAMDSLLSIT 170 (504) T ss_pred CCC--ChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeEEEEeCCCCceeEEEEEE Confidence 543 334557999999999999999999999999999999999998874 6899999999999999876545444445 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC------CCCchH-HH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGMGEV-EP 229 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~s~~-~~ 229 (456) +++.++....+++|+++.++++..... +.|. ....+|.++ +|||+|.|. +|.|+| ++ T Consensus 171 ~~d~~g~~~~~~~y~~~~~~~~~~~~~--------------~~~~-~~~~~~~~g-vPvV~~~n~~~~~~~~G~sei~~~ 234 (504) T protein:vir:99 171 SRDAEGHPTGIALYEDGVTVTADMDDD--------------GDWH-ADVRTHKLG-VPVEVLPYKPREDRPLGSSRITRP 234 (504) T ss_pred EecCCCeEEEEEEEcCCcEEEEEEcCC--------------ceee-eccccCCCC-cceEEecccccCccccCcccchhh Confidence 566677777889999999998865321 1122 234567788 567777553 688888 48 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCC----------Ccceee Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPP----------GVDIWE 299 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 299 (456) |++|+|+||++++++++.++||++|+++++|..++.+. +++|++. ..+....+++|.++. ++++++ T Consensus 235 v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~~-~~d~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~q 310 (504) T protein:vir:99 235 VMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNFR-NKDGSMK---PAWQIALARVFALPDDEDEPDAARARADVKQ 310 (504) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCccccc-ccccccc---chhhhhhhhhhcCCCccccccccCccceeee Confidence 99999999999999999999999999999999876653 4455443 345666677776653 467899 Q ss_pred ccccchHHHHHHHHHHHHHHHhhcCCChhhhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 300 SQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPD--SANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE 377 (456) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~--~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~ 377 (456) ++++++++|+++++.++++|+++|+||+++||.. .+|+||+||++++.+|.+||+++++.|+.+|++++++++++.+. T Consensus 311 ~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~~~~~L~~ka~~k~~~f~~~l~~~~rla~~~~~~ 390 (504) T protein:vir:99 311 FPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAYIASREDLIAEAEGATDDWSPAFRRSMIRALAIKNG 390 (504) T ss_pred cCCCChHHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 9999999999999999999999999999999843 34679999999999999999999999999999999999988653 Q ss_pred -----CccccceEEecCCCCCCHHHHHHHHHHHHhcCCC---cHHHHHHhCCCCccHHHHHHHHHHHHHH----HHHhhc Q lcl|Aclame:pro 378 -----SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGES---WASIRRNILNYNADQIKQDDLDRAREQI----TLFAGN 445 (456) Q Consensus 378 -----~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~---s~~t~~~~~~~~~~~~~~~e~~~~~e~~----~~~~~~ 445 (456) ....++++.|+++.++|.++.||+++||+++|.. ..+++++++|+++++++++++++++++. +++.+. T Consensus 391 ~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~~~~~~~l~~~ 470 (504) T protein:vir:99 391 LDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRASSVSIIEALNRR 470 (504) T ss_pred CCccccccccceeEecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHhcc Confidence 2346789999999999999999999999998852 3578899999999999888776655443 223222 Q ss_pred ccccccCCCCC Q lcl|Aclame:pro 446 PVQRPQEDGSR 456 (456) Q Consensus 446 ~~~~~~~~Gs~ 456 (456) ....+.+++.. T Consensus 471 ~~~~~~~~~~~ 481 (504) T protein:vir:99 471 QQEAATAGEDQ 481 (504) T ss_pred cCCCCCCCCCC Confidence 11111111111 No 13 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=100.00 E-value=9.4e-88 Score=497.70 Aligned_cols=433 Identities=13% Similarity=0.107 Sum_probs=359.2 Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 1 MT--ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 1 ~~--~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) +. ++++.++++.|+++|..+++|++++++||+|+|++++++++.+++++.. ++++|||+++||++++++..+||+. T Consensus 9 ~~gl~~~~~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~~~~~~~~p~~~r~~--~~v~nw~~~~Vd~~a~rl~~~Gf~~ 86 (474) T protein:vir:81 9 IPSLSNDENALINGLLAQIENLRWKNLLRTSYYENKRTIQYVGTLIPPQYFNL--GLVLGWTGKAVDALARRCNLEGFVW 86 (474) T ss_pred CCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHhccCCChhhccccccHHHHHH--HhhcChHHHHHHHHHhhhcccceEC Confidence 33 3445668999999999999999999999999999999999999998743 5789999999999999999999997 Q ss_pred CCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc--eEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 79 GGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT--ATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 79 ~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~--~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) +++++ ....+|++|++|+|+..+.++++++++|||||++|+++++|+ ++|++++|++++++|||.+++...++.++ T Consensus 87 ~d~~~--~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~~D~~~~~~~~al~~~ 164 (474) T protein:vir:81 87 PDGDL--DSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGEWNRRRRGLNNLLSII 164 (474) T ss_pred CCCCc--cchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEEEeCCCCcceeeeEEE Confidence 54332 234689999999999999999999999999999999988775 67999999999999999887655555556 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC------CCCchH-HH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGMGEV-EP 229 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~s~~-~~ 229 (456) +++.++.....++|+++.++++.+... ...|. ....+|.+|+ |+|+|.|. +|.|+| ++ T Consensus 165 ~~~~~g~~~~~~ly~~~~~~~~~~~~~-------------~~~w~-~~~~~~~~gv-PvV~~~n~~~~~~~~G~s~i~e~ 229 (474) T protein:vir:81 165 DKDKEGKVLSLALYLDNETVTAQRDKA-------------TLKWQ-VDRDEHVYGV-PAQVLPYKPAPKRPFGQSRITKP 229 (474) T ss_pred EEcCCCcEEEEEEEeCCcEEEEEEcCc-------------cceee-eccCCCCCCc-ceEEecccccccCcCCccccchh Confidence 677778888899999999998865321 12222 2345677786 67777554 789988 79 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCC----------cceee Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG----------VDIWE 299 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 299 (456) +++|+|++|++++++++.++|+++|+++++|.++..+. +++|++. ..+....+++|.++++ ++++| T Consensus 230 v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~~-d~d~~~~---~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q 305 (474) T protein:vir:81 230 MMGLQDAGVRELARREGHMDVFSYPEFWLLGADESALK-NADGTIK---SVWEARLGRIKGLPDDADADIPQLARADVKQ 305 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhcc-ccccccc---chhhhhHHHHhcCCCcccccccccccccccc Confidence 99999999999999999999999999999999876653 4455443 4566777788877654 57899 Q ss_pred ccccchHHHHHHHHHHHHHHHhhcCCChhhhccc-ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 300 SQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPD-SAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE 377 (456) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~-~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~ 377 (456) |+++++++|+++++.++++|+++|+||+++||.. .+| +||+||++++.+|..|++++++.|+.+|++++++++++.|. T Consensus 306 ~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~ 385 (474) T protein:vir:81 306 FPAASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAEAEGAVDDFTPALRKAFIRALAMKNK 385 (474) T ss_pred cCCCChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 9999999999999999999999999999999843 467 59999999999999999999999999999999999999874 Q ss_pred C-------ccccceEEecCCCCCCHHHHHHHHHHHHhcC--CCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcc-c Q lcl|Aclame:pro 378 S-------VEDTVDVSFESPDRVTLGEKYSAASLAKAAG--ESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNP-V 447 (456) Q Consensus 378 ~-------~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g--~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~-~ 447 (456) . ...++++.|+++.++|.++.||+++||+++| +++++++++++|+++++++++++++++++.....+.. . T Consensus 386 ~~~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t~~~i~~~~~~~~~~~~~~~~~~l~~ 465 (474) T protein:vir:81 386 VAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLTPQQARRAMADKRRVQGRGTLQALID 465 (474) T ss_pred CCccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHh Confidence 2 2357899999999999999999999999875 6778999999999999999888776665544333332 2 Q ss_pred ccccCCCCC Q lcl|Aclame:pro 448 QRPQEDGSR 456 (456) Q Consensus 448 ~~~~~~Gs~ 456 (456) .....+.++ T Consensus 466 ~~~~~~~aq 474 (474) T protein:vir:81 466 RSNNGATAQ 474 (474) T ss_pred cCCCCCCCC Confidence 223333334 No 14 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=100.00 E-value=2.6e-86 Score=489.80 Aligned_cols=419 Identities=17% Similarity=0.138 Sum_probs=351.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCC Q lcl|Aclame:pro 2 TASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGS 81 (456) Q Consensus 2 ~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~ 81 (456) ...++.++++.|+.+|..+++||+++.+||+|+|++++.++..++.++ ++++++|||++|||+.++|+.++||+..+ T Consensus 1 ~~~~~~~~i~~l~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~--~~k~~~n~~~~ivd~~~~~l~~~g~~~~d- 77 (441) T protein:vir:80 1 MNSDELALIEGMYDRIQRLSSWHCCIEGYYEGSNRVRDLGVAIPPELQ--RVQTVVSWPGIAVDALEERLDWLGWTNGD- 77 (441) T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCcccchhhh--hhhhhcchHHHHHHHHHhhhccccccCCC- Confidence 555666689999999999999999999999999999999988888765 56799999999999999999999997532 Q ss_pred ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecC Q lcl|Aclame:pro 82 ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLD 161 (456) Q Consensus 82 ~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 161 (456) .+.++++|+.|+|+.++.+++++++++|+||++||+|++|.+++++++|++++++||+.+++...++++++. .. T Consensus 78 -----~~~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~-~~ 151 (441) T protein:vir:80 78 -----GYGLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTVSVRPQSPKNCTGKFSADGSRLDAGLVVQQT-CD 151 (441) T ss_pred -----hHHHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceEEEEEccceEEEEEeCCCCceeEEEEEEEE-ec Confidence 235889999999999999999999999999999999999999999999999999999887766666555554 45 Q ss_pred CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC------CCCchHH-HHHHHH Q lcl|Aclame:pro 162 AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGMGEVE-PHIDII 234 (456) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~s~~~-~v~~li 234 (456) +...++++|+++.+++|.... .+.|......+|.+|+||+++|.|. +|+|+|+ .|++|| T Consensus 152 ~~~~~~~vy~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~li 217 (441) T protein:vir:80 152 PEVVEAELLLPDVIVQVERRG--------------SREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYT 217 (441) T ss_pred CceEEEEEEecCeEEEEEEcC--------------CcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHH Confidence 556778999999999886532 2334455678899999999988664 4788885 599999 Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCC-----cceeeccccchHHHH Q lcl|Aclame:pro 235 NRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG-----VDIWESQANDFTPML 309 (456) Q Consensus 235 D~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 309 (456) |+||+++|++++.+++|++|+++++|...+.+..+ .+....+++|.++++ +++++++++++++|+ T Consensus 218 Da~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (441) T protein:vir:80 218 DEAVRTLLGQSVNRDFYAYPQRWVTGVSADEFSQP----------GWVLSMASVWAVDKDDDGDTPNVGSFPVNSPTPYS 287 (441) T ss_pred HHHHHHHHHHHHHHHhhcCceeeeecCCccccccc----------hhhhcccccccCCCCCCCCcceeEecCccchHHHH Confidence 99999999999999999999999999876543221 233445667766543 567889999999999 Q ss_pred HHHHHHHHHHHhhcCCChhhhccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccc Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSANQ-SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-----EDTV 383 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~n~-Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-----~~~i 383 (456) ++++.++++|++.+++|++.|++.+.|+ ||+||++++.+|++||+.+++.|+++|++++++++++.|... ..++ T Consensus 288 ~~l~~~i~~~~~~~~~p~~~~g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i 367 (441) T protein:vir:80 288 DQMRLLAQLTAGEAAVPERYFGFITSNPPSGEALAAEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDV 367 (441) T ss_pred HHHHHHHHHHhcccCCCHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceee Confidence 9999999999999999999999877775 999999999999999999999999999999999999876432 3578 Q ss_pred eEEecCCCCCCHHHHHHHHHHHHhcCCC--cHHHHHHhCCCCccHHHHHHHHHHHH--HHHHHhhcccccccCC Q lcl|Aclame:pro 384 DVSFESPDRVTLGEKYSAASLAKAAGES--WASIRRNILNYNADQIKQDDLDRARE--QITLFAGNPVQRPQED 453 (456) Q Consensus 384 ~v~f~~~~~~~~~e~ad~~~kl~~~g~~--s~~t~~~~~~~~~~~~~~~e~~~~~e--~~~~~~~~~~~~~~~~ 453 (456) +++|+++.|+|.++.||+++||+++|++ |++|+++.+|++++++++++++++++ ++.++++..+.+|++= T Consensus 368 ~~~f~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l~~~~~e~~~~~~e~~e~~~~~~~~~~~~~~~~~~~ 441 (441) T protein:vir:80 368 GLRWRDASTPTRAATADAVTKLVGAGILPADSRTVLEMLGLDDVQVEAVMRHRAESSDPLAVLAGAISRQTNEV 441 (441) T ss_pred eEEeCCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC Confidence 9999999999999999999999999875 77899999999999999887765443 3444444444444444 No 15 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=100.00 E-value=1e-83 Score=475.56 Aligned_cols=426 Identities=15% Similarity=0.156 Sum_probs=333.3 Q ss_pred CC-----CCCHHHHH----HHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchh-hhhhhhhhcCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MT-----ASTPAEWL----PVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAA-WRSFQREARTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~-----~~t~~~~~----~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~-~~~~~~k~~~n~~~~iVd~~~~~ 70 (456) |. ++|++++. ..|+.+|..+.+||+++++||+|+|+|++.+.+.++. .++..+++++|||++|||+.++| T Consensus 1 ~~~~p~~~l~~~~~~~~~~~~l~~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~iVd~~~~~ 80 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYLETKVFPKMNTECERLDDFEAWTKNGQEVPDLATRHKNKEREVLQQLSRKPWMGLMVNSFAQQ 80 (479) T ss_pred CccCCcccCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcccccccccCChhHHHHHHHhhcCcHHHHHHHHHhh Confidence 44 56666644 4677899999999999999999999999887655544 34556677899999999999999 Q ss_pred hhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEe-----CCCCceEEEEEccceEEEEeeCC Q lcl|Aclame:pro 71 IIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWR-----RDDGTATITADSPETMVVSVDPL 145 (456) Q Consensus 71 l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~-----~~~g~~~i~~~~p~~~~~i~d~~ 145 (456) ++++||+..+ .+....++++|++|+|+.++.++++++++||+||++||+ |++|.+++++++|++++++||+. T Consensus 81 l~~~gf~~~d---~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~~i~~~~p~~~~~iydd~ 157 (479) T protein:vir:99 81 LIVDGYRKTG---TNENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVARIKCIDPRDAFAIWEDP 157 (479) T ss_pred cccccccCCC---chhhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCceEEEEechhheEEEecCC Confidence 9999998753 334567899999999999999999999999999999996 56788999999999999999876 Q ss_pred CCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC----- Q lcl|Aclame:pro 146 QPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN----- 220 (456) Q Consensus 146 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n----- 220 (456) ....... ..++ . .......+|+...++.+... .+.|......+|.+|+|||++|.| T Consensus 158 ~~~~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~h~~g~vPvv~f~n~~~~~ 218 (479) T protein:vir:99 158 YWDEWPK--YLLE-R-QPNGQYWWWTEEDYSIFEFK---------------QGKFIYRETVSHDYGHIPFVRYVNVMDLR 218 (479) T ss_pred cccceee--EEEe-e-cCceeEEEEecceEEEEEec---------------CCceeeccccccCCCCcceEEeecCCCcC Confidence 5443222 1111 1 12334567777766665432 244555567789999999998865 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccce-eecCCCcceee Q lcl|Aclame:pro 221 PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGAL-WELPPGVDIWE 299 (456) Q Consensus 221 ~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 299 (456) ++|+|+|+++++|||+||+++|++++.+++|++|+++++|...... ..+.. ..+....+++ +..++++++++ T Consensus 219 ~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~---~~~~~----~~~~~~~~~i~~~~~~~~~~~q 291 (479) T protein:vir:99 219 GVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEG---ANADQ----EKMRFAQESMLISQNEKASFGA 291 (479) T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCcccc---cccch----hccccccccceeecCCCceEEE Confidence 4689999999999999999999999999999999999999765322 11111 1122233344 44567899999 Q ss_pred ccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 300 SQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV 379 (456) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~ 379 (456) ++++++++|+++++.++++|++++++|++.|| .++|+||+||++++.+|+++|+.+++.|+.+|++++++++++.|... T Consensus 292 ~~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g-~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~ 370 (479) T protein:vir:99 292 IPAAPLDGLLNAYKESLLEFLALAQLPPHIAG-QIVNVAADALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTE 370 (479) T ss_pred ecccchHHHHHHHHHHHHHHhccCCCCHHHcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc Confidence 99999999999999999999999999999997 46789999999999999999999999999999999999999988643 Q ss_pred ---cccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhC-CCCccHHHHHHHHHHHH-HHHHHhhcccccc---- Q lcl|Aclame:pro 380 ---EDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL-NYNADQIKQDDLDRARE-QITLFAGNPVQRP---- 450 (456) Q Consensus 380 ---~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~-~~~~~~~~~~e~~~~~e-~~~~~~~~~~~~~---- 450 (456) ..+++++|+++.++|.++.||+++||+++|++|++|+++++ |++++++++++++++++ +..++.......+ T Consensus 371 ~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~l~gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (479) T protein:vir:99 371 EATDLDFTITWQDVTIQSLAQFADAWAKMVESLKIPAEGVWDMIPNLDQSTVNGWKEIYDREGDFGKYMRKLQNGPDPAE 450 (479) T ss_pred cccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCccc Confidence 35689999999999999999999999999999999999988 67776667665444332 2333222221111 Q ss_pred ---cCCCCC Q lcl|Aclame:pro 451 ---QEDGSR 456 (456) Q Consensus 451 ---~~~Gs~ 456 (456) ..+|.. T Consensus 451 ~~~~~~~~~ 459 (479) T protein:vir:99 451 QRGGPNGAT 459 (479) T ss_pred ccCCCCCCC Confidence 111111 No 16 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=100.00 E-value=1.5e-83 Score=474.62 Aligned_cols=386 Identities=13% Similarity=0.077 Sum_probs=329.2 Q ss_pred HHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHh Q lcl|Aclame:pro 17 IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDLALRARRIWRD 96 (456) Q Consensus 17 ~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~ 96 (456) +..+.+|++++.+||+|+|++++++.+.+++++..+ ++++|||+++||++++++..+||+.. |. .++++|++ T Consensus 1 l~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~-~~v~nw~~~~Vds~a~rl~~~Gf~~~---d~----~l~~i~~~ 72 (410) T protein:vir:95 1 MNLYQSRVNLRYKHYAMQHYEAPTGITIPAHIRAKY-QAVLGWAAKGVDSLADRLIFRAFAND---DF----NVTEIFDR 72 (410) T ss_pred CCcchhhHHHHHHHhcCCCCccccchhccHHHHhHH-HhhcchhHHHHHHhHhhhccccccCC---Cc----hHHHHHhh Confidence 666788999999999999999999999999987655 58899999999999999999999742 21 48999999 Q ss_pred cChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEE-ecCCceeEEEEEeCCeE Q lcl|Aclame:pro 97 NRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWR-DLDAESDFAIVWSGDGW 175 (456) Q Consensus 97 n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~ 175 (456) |+|+..+.++++++++|||||++|+++++|.++|++++|++++++|||.++ ++.++++++. +..+....+.+|+++.+ T Consensus 73 N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~~i~~~sP~~~~~i~Dp~~~-~~~~al~~~~~~~~~~~~~~~~~~~~~~ 151 (410) T protein:vir:95 73 NNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDPITG-LLVEGYAVLARDDYNRPTLEAYFEPNAT 151 (410) T ss_pred cChHHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEEeCCCC-ceEEEEEEEEecCCCeEEEEEEEeCCcE Confidence 999999999999999999999999999999999999999999999999765 5666676654 45556778899999999 Q ss_pred EEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC------CCCchH-HHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 176 QKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGMGEV-EPHIDIINRINRAELQLLSTM 248 (456) Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~s~~-~~v~~liD~~~~~~s~~~~~~ 248 (456) +++...+.. | ..+|.+|+||+|+|.|. +|.|+| ++|++|+|++|++++++++.+ T Consensus 152 ~~~~~~~~~---------------~----~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~ 212 (410) T protein:vir:95 152 HFIPKDGEP---------------Y----SVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITA 212 (410) T ss_pred EEEeeCCcc---------------c----cccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHHHHHHHH Confidence 988653311 1 24688999999999753 678888 789999999999999999999 Q ss_pred HHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCC-----cceeeccccchHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 249 AIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG-----VDIWESQANDFTPMLSAIKEHIRQLSSAT 323 (456) Q Consensus 249 ~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~t 323 (456) +||++|+++++|.+. +|++. ..++...+++|.++.+ ++++|++++++++|+++++.++++|+++| T Consensus 213 e~~a~pqr~i~G~d~-------d~~~~---~~~~~~~~~i~~~~~~~~~~~~~v~q~~~~~l~~~~~~l~~l~~~~a~~s 282 (410) T protein:vir:95 213 EFYSWPQKYILGLDP-------DAEPM---EKWKATVSSLLTISSSDKGVKPSVGQFTTASMSPFTEQLRTAAAGFAGEM 282 (410) T ss_pred HHhcchhheeeccCC-------CCCcC---chhhhhhhhheeccCCCCCCcceEEecCCCChHHHHHHHHHHHHHHhhhc Confidence 999999999999743 33332 3567777888888643 68999999999999999999999999999 Q ss_pred CCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----ccccceEEec---CCCCCC Q lcl|Aclame:pro 324 KTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-----VEDTVDVSFE---SPDRVT 394 (456) Q Consensus 324 ~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-----~~~~i~v~f~---~~~~~~ 394 (456) +||+++||+.+.| +||+||++++.+|..|++++++.|+.+|++++++++++.+.. ...++++.|+ ++..++ T Consensus 283 ~lP~~~lg~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~s 362 (410) T protein:vir:95 283 GLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAVKWEPLFEADANT 362 (410) T ss_pred CCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeEEeeecCCcchhh Confidence 9999999998888 499999999999999999999999999999999999987643 2356889999 778899 Q ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 395 LGEKYSAASLAKAA--GESWASIRRNILNYNADQIKQDDLDRAREQITLFAG 444 (456) Q Consensus 395 ~~e~ad~~~kl~~~--g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~ 444 (456) .++.||+++||+++ |+++++++++.+||+++++.+..++.+ .+.+. T Consensus 363 ~a~~aDa~~Kl~~a~~g~~~~~~~~~~lg~~~~~~~~~~~~e~----~~~g~ 410 (410) T protein:vir:95 363 MTMIGDGVVKLNQALPGYINAETIRDLTGIAGDMSAKPVVSEG----GSNGE 410 (410) T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHhcCCChHHHHHHHHHHH----HhCCC Confidence 99999999999998 899999999999999886655332221 11111 No 17 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=100.00 E-value=6.9e-82 Score=465.55 Aligned_cols=428 Identities=11% Similarity=0.059 Sum_probs=337.1 Q ss_pred CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 1 MTASTP--AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 1 ~~~~t~--~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) |..+++ .++|..|+.+|..+++|++++++||+|+|+|+..+.+. ..+.++|+++||+++||++.++|++|+|+++ T Consensus 11 ~p~d~~~~~~~l~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~---~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~ 87 (453) T protein:vir:39 11 FPKDEPITNEVVTKFMEKHRLEVARYEYLKNMYRGIMAIDAEPTKD---LWKPDNRLTVNFTKYIVDTFTGYFNGIPVKK 87 (453) T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhcCCCcc---ccCccceeecchHHHHHHHHhhhhcccCcee Confidence 665555 56899999999999999999999999999997665432 2356678999999999999999999999999 Q ss_pred CCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEE Q lcl|Aclame:pro 79 GGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWR 158 (456) Q Consensus 79 ~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~ 158 (456) +.. +++..+.|+++|++|+|+.++.+++++++++|+||++||++++|.+++++++|++++++||+..++++.+++++|. T Consensus 88 ~~~-d~~~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~ 166 (453) T protein:vir:39 88 SHS-DKETLSKLQEFDNLNDMEDEESELAKMACIYGRAFELLYQNEETQTNVIYNTPENMFMVYDDTIKQEPLFAVRYGY 166 (453) T ss_pred ccC-ChHHHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEecCCCCCeEEEEEEEEE Confidence 754 4456778999999999999999999999999999999999999999999999999999999988888999999886 Q ss_pred ecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 159 DLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDIINRI 237 (456) Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~liD~~ 237 (456) .. +...++.+|+++.+++|.... +.|......+|+++.|||++|. |++|+|+|+++++|||+| T Consensus 167 ~~-~~~~~~~~yt~~~i~~~~~~~---------------~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~ 230 (453) T protein:vir:39 167 DD-DYKLYGEVYTKETTYALNGTM---------------GFYNMTEQAPNPFDDLPVVEFYFNEERMSIFESVISLVNAF 230 (453) T ss_pred eC-CeEEEEEEEeCCeEEEEEecC---------------CceeeecccccCCCceeEEEecCCCCCCcchhhhHHHHHHH Confidence 54 456788999999999886432 3344456678999999999885 578999999999999999 Q ss_pred HHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccccchHHHHHHHHHHHH Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIR 317 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (456) |+++|++++.++++++|+++++|...+... .........+....+.....++++++.+. +.+.+.++++++.+.. T Consensus 231 ~~~~s~~~~~~~~~~~p~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~~~~~~~l~~ 305 (453) T protein:vir:39 231 NKAISEKANDVDYFSDQYLTFLGAAVEEED----LKNIRSNRVINYYGESSEAKNVDVKFLEK-PDSDSQTENLLDRLTK 305 (453) T ss_pred HHHHHHHHHHHHHhhCceeeeecCCCCchh----hhhhhhcceeeecCCCCCCCCCceeEEee-cCCHHHHHHHHHHHHH Confidence 999999999999999999999997654321 11111111121111111122344444443 3556788888999999 Q ss_pred HHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CccccceEEecCCCCC Q lcl|Aclame:pro 318 QLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE----SVEDTVDVSFESPDRV 393 (456) Q Consensus 318 ~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~----~~~~~i~v~f~~~~~~ 393 (456) +|+..+++|...++.+ +|+||+||++++++|..||+++++.|+.+|++++++++++.+. .+..+++++|+++.|. T Consensus 306 ~I~~~s~~p~~~~~~~-gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~ 384 (453) T protein:vir:39 306 LIFQTTMVANISDESF-GSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSNKEAWKDIEYTFTRNEPK 384 (453) T ss_pred HHHHHhCCcccccccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCc Confidence 9999999998877655 6899999999999999999999999999999999999887643 2345789999999999 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHH-HHHhh-cc-cccccCCCCC Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQI-TLFAG-NP-VQRPQEDGSR 456 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~-~~~~~-~~-~~~~~~~Gs~ 456 (456) |+++.|++++|+ +|++|++|+++++|+++|..+++++.+++++. ..... .. ...+.++++- T Consensus 385 ~~~~~a~~~~kl--~g~is~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 448 (453) T protein:vir:39 385 DIKEQAETANIL--MGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVP 448 (453) T ss_pred CHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC Confidence 999999999987 58999999999999998766655543332221 11111 11 1111111221 No 18 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=100.00 E-value=5.1e-82 Score=466.26 Aligned_cols=442 Identities=14% Similarity=0.061 Sum_probs=333.0 Q ss_pred CCCCCH-----HHHHHHHHHHH-HHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MTASTP-----AEWLPVLTKRI-DDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~~~t~-----~~~~~~l~~~~-~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) |++... .+.+..++.+| ..+.+||+++++||+|+|+++......++.. +.++|+++||+++||++.++|++|+ T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~-~~~~ki~~n~~k~Ivd~~~~yl~g~ 109 (512) T protein:vir:97 31 YDGTESDLLQNINEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEY-MADNRVAHDYASYISDFINGYFLGN 109 (512) T ss_pred cCchhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccc-cCcceeecchHHHHHHHHhhhhccc Confidence 432221 23455566655 5668899999999999999987665555544 4567899999999999999999999 Q ss_pred CcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 75 GITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 75 ~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) |++++.+ +++..+.++++|+.|+++.++.+++++++++|+||+++|.+++|++++++++|++++++||+....++.+++ T Consensus 110 p~~~~~~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~~i~~~~p~~~~~iyd~~~~~~~~~~v 188 (512) T protein:vir:97 110 PIQCQDD-DKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGV 188 (512) T ss_pred CceeccC-ChHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 9999754 455677899999999999999999999999999999999999999999999999999999998888899999 Q ss_pred EEEEecC------CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchH Q lcl|Aclame:pro 155 RWWRDLD------AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEV 227 (456) Q Consensus 155 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~ 227 (456) |+|.... ....++.+|+++.+++|......+... .+......+|+++.+||++|. |++|+|+| T Consensus 189 r~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~ 258 (512) T protein:vir:97 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKL----------TPRENGFESHSFERMPITEFSNNERRKGDY 258 (512) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccc----------cccccccccccCcccceEeecCCCCCCCch Confidence 9987432 224567899999999987654332211 122344567899999999885 57899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccc---ccccchhhhhhhhhhhhhccceeecCCCcceeecc-cc Q lcl|Aclame:pro 228 EPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLP---NVDENGNAIDYASIFEAAPGALWELPPGVDIWESQ-AN 303 (456) Q Consensus 228 ~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~---~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 303 (456) +++++|||+||+++|++++.++++++|+++++|.....+ .....+..+..........+.....+.++++..+. +. T Consensus 259 e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 338 (512) T protein:vir:97 259 EKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQY 338 (512) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCchhhhhhhhcccccccccchhhcccccCCCCCcceEEEeecC Confidence 999999999999999999999999999999999653322 11111222111111111222222233444443322 35 Q ss_pred chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------- Q lcl|Aclame:pro 304 DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG------- 376 (456) Q Consensus 304 ~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g------- 376 (456) +.+.+..+++.+.++|+..+++|+..++++++|+||+||++++.+|.++|..+++.|+++|++++++++++.+ T Consensus 339 ~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~ 418 (512) T protein:vir:97 339 DVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDA 418 (512) T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc Confidence 6677888888999999999999999998888999999999999999999999999999999999999987643 Q ss_pred CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH--HHHHHHhhcccccc---- Q lcl|Aclame:pro 377 ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR--EQITLFAGNPVQRP---- 450 (456) Q Consensus 377 ~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~--e~~~~~~~~~~~~~---- 450 (456) ..+..+++++|+++.|+|.++.|+++++| +|++|.+|+++++|++++..+++++.+++ +++..........+ T Consensus 419 ~~d~~~i~~~f~~~~p~~~~e~~~~~~kl--~giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~ 496 (512) T protein:vir:97 419 NKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDIN 496 (512) T ss_pred ccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC Confidence 12334689999999999999999999988 48999999999999987655544432222 11222211111111 Q ss_pred ---cCCCCC Q lcl|Aclame:pro 451 ---QEDGSR 456 (456) Q Consensus 451 ---~~~Gs~ 456 (456) ++++|+ T Consensus 497 ~~~~~~~~~ 505 (512) T protein:vir:97 497 DDEQDDDTK 505 (512) T ss_pred CCCCCCCcc Confidence 222222 No 19 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=100.00 E-value=1.4e-82 Score=469.40 Aligned_cols=385 Identities=12% Similarity=0.058 Sum_probs=332.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD 83 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d 83 (456) |+ .++|++|.+++..+.+|++++.+||+|+|+++++++..+++++..+ ++++|||+++||++++++..+||+.. | T Consensus 1 ~~-~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~-~~v~nw~~~iVds~a~rl~~~Gf~~~---d 75 (409) T protein:vir:94 1 MT-EKGIGYLRFKLSVHKRRAEMRYDQYAMKYVDRFKGITIPQALSQQY-RSILGWCAKGVDSLADRLVFREFEND---D 75 (409) T ss_pred CC-HHHHHHHHHHHHHHhHHHHHHHHHhcccCchhhcChhhhHHHHHHH-hhhcchhHHHHHHhHhhcccCcccCC---c Confidence 43 4589999999999999999999999999999999999999887654 57889999999999999999999742 2 Q ss_pred ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEe-cCC Q lcl|Aclame:pro 84 SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRD-LDA 162 (456) Q Consensus 84 ~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~-~~~ 162 (456) ..+|++|++|+|+..+.++++++++|||||++||++++|.++|++++|++++++|||.++ ++.++++++.+ ..+ T Consensus 76 ----~~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~~sp~~~~~i~D~~~~-~~~~a~~~~~~d~~~ 150 (409) T protein:vir:94 76 ----FTVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVIEAVNATGIIDPITG-LLTEGYAVLERDENN 150 (409) T ss_pred ----hHHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEEeccceEEEEEecCCC-ceeeeEEEEEecCCC Confidence 258999999999999999999999999999999999999999999999999999999766 47777777654 445 Q ss_pred ceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC------CCCchH-HHHHHHHH Q lcl|Aclame:pro 163 ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGMGEV-EPHIDIIN 235 (456) Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~s~~-~~v~~liD 235 (456) ......+|+++.++++...... |. ..+|.+|+||+|+|.|. +|.|+| ++|++|+| T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~---------------~~---~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~d 212 (409) T protein:vir:94 151 NVVLEAHFLPDRTDYYYRDSRN---------------NI---SIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQS 212 (409) T ss_pred ceEEEEEEecCcEEEEEecCce---------------eE---eeeCCCCCcceEEeccccccccccCccccchhHHHHHH Confidence 5667889999999988654322 11 23688899999999763 688888 78999999 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecC-----CCcceeeccccchHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELP-----PGVDIWESQANDFTPMLS 310 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 310 (456) ++|++++++++.++||++|+++++|.+. +++++ ..+....+++|.++ ++++++|++++++++|++ T Consensus 213 a~~r~~~~~~~~~e~~a~pqr~i~G~d~-------d~~~~---~~~~~~~~~i~~~~~d~dg~~~~v~q~~~~~l~~~~~ 282 (409) T protein:vir:94 213 NAKRTLERADVTAEFYSFPQKYVTGLSD-------DAEPM---ETWKATVSSMLQFTKDEDGDKPTLGQFTQPSMSPFTE 282 (409) T ss_pred HHHHHHHHHHHHHHHhcChhheeEecCC-------CCccc---chhhhhHHHhhcCCCCCCCCCceEEecCCCChhHHHH Confidence 9999999999999999999999999743 33332 35677778888876 346799999999999999 Q ss_pred HHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccce Q lcl|Aclame:pro 311 AIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-----EDTVD 384 (456) Q Consensus 311 ~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-----~~~i~ 384 (456) +++.++++|+++|+||+++||+.++| +||+||++++.+|..+++++++.|+.+|++++++++++.+... ..+++ T Consensus 283 ~l~~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~ 362 (409) T protein:vir:94 283 QLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTK 362 (409) T ss_pred HHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccce Confidence 99999999999999999999998888 5999999999999999999999999999999999999876532 24789 Q ss_pred EEecCC---CCCCHHHHHHHHHHHHhcC--CCcHHHHHHhCCCCccH Q lcl|Aclame:pro 385 VSFESP---DRVTLGEKYSAASLAKAAG--ESWASIRRNILNYNADQ 426 (456) Q Consensus 385 v~f~~~---~~~~~~e~ad~~~kl~~~g--~~s~~t~~~~~~~~~~~ 426 (456) +.|++. .+++.++.||+++||+++| +.+++++++.+||++++ T Consensus 363 v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 363 PKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred EEeccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 999944 5666789999999999998 56789999999999876 No 20 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=100.00 E-value=4.2e-81 Score=461.22 Aligned_cols=428 Identities=13% Similarity=0.029 Sum_probs=334.5 Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcc Q lcl|Aclame:pro 1 MT---ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGIT 77 (456) Q Consensus 1 ~~---~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~ 77 (456) |. .+|++++.+.+.+++...++||+++++||+|+|+|+..+... .+.++|+++||+++||++.++|++|+|++ T Consensus 19 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~----~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~ 94 (470) T protein:vir:99 19 FPKGEKLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKILTAPEKE----TGADNRIVVNSAKYVVDVYNGYFCGIEPK 94 (470) T ss_pred eCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccCcccc----cCCcceeecchHHHHHHHHhhhhccCCee Confidence 44 677777666555555667799999999999999987654332 34567899999999999999999999999 Q ss_pred cCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEE Q lcl|Aclame:pro 78 VGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWW 157 (456) Q Consensus 78 ~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 157 (456) ++..+|++..+.++++|++|+|+.++.+++++++++|+||+++|.+++|.+++++++|++++|+||+...+++.+++|+| T Consensus 95 ~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~~p~~~~~i~d~~~~~~~~~~vr~~ 174 (470) T protein:vir:99 95 LALLNDSSKIDEIARWNRQENFFDTINEISKQCDIFGRSIASIYQGEDARPHLMYSSPNHAFIIYDDTVQRQPLAFVHYQ 174 (470) T ss_pred EeeCCchhHHHHHHHHHHhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeEEEEEEccceeEEEEcCCCCcceEEEEEEE Confidence 98777777778899999999999999999999999999999999999999999999999999999998888999999999 Q ss_pred EecCCc--eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHHH Q lcl|Aclame:pro 158 RDLDAE--SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDII 234 (456) Q Consensus 158 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~li 234 (456) ....+. ..+..+|+++.++++...... .........+|+++.|||+++. |++|+|+|+++++|| T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~li 241 (470) T protein:vir:99 175 IDNSNNWTDAYGVIQYADKFYKFKGYDIE-------------EDTNAAGYAINPYGLVPAVEFFENEERQGIFDSIKTLI 241 (470) T ss_pred EEecCCeeEEEEEEEecCeEEEEEecccc-------------cccccccccccCCCccceEeecCCCCCCcchHhHHHHH Confidence 876544 446779999999888653211 1122344567899999998884 678999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeec-----CCCcceeecc-ccchHHH Q lcl|Aclame:pro 235 NRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWEL-----PPGVDIWESQ-ANDFTPM 308 (456) Q Consensus 235 D~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~ 308 (456) |+||+++|++++.++++++|+++++|...+. ++.|++... ...+.++.. +.++++.++. +.+.+.+ T Consensus 242 Da~~~~~s~~~~~~~~~~~~~~~i~g~~~~~---~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (470) T protein:vir:99 242 NALDKVISQKANQVEYFDNAYMYMIGFKLPE---DDEGNPKFD-----FKNNRVLYVSQLDPDTNPQIGFIAKPDADQMQ 313 (470) T ss_pred HHHHHHHHHHHHHHHHhcCceeeeecCCccc---ccccchhhh-----hhhcceeeecCCCCCCCCcceEEeecCChHHH Confidence 9999999999999999999999999976543 334443321 112223322 2344454443 4466778 Q ss_pred HHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----Cccccc Q lcl|Aclame:pro 309 LSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-----SVEDTV 383 (456) Q Consensus 309 ~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-----~~~~~i 383 (456) +++++.+.++|++.+++|+..++++++|+||+||++++.+|.+||+.+++.|+.+|++++++++++.+. .+..++ T Consensus 314 ~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i 393 (470) T protein:vir:99 314 ENLIQHLTDFIFMMAMVPNIQDKNFAGNSSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELWSEL 393 (470) T ss_pred HHHHHHHHHHHHHHhCCccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccc Confidence 888999999999999999988888889999999999999999999999999999999999999876532 234578 Q ss_pred eEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCc--cHHHHHHHHHHHHHHHHHhhccc--ccc--cCCCCC Q lcl|Aclame:pro 384 DVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNA--DQIKQDDLDRAREQITLFAGNPV--QRP--QEDGSR 456 (456) Q Consensus 384 ~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~--~~~~~~e~~~~~e~~~~~~~~~~--~~~--~~~Gs~ 456 (456) +++|+++.|+|.++.|+++++++ |++|.+|+++++|+++ ++++++++|+.+. ......... +.. +++|-. T Consensus 394 ~v~f~~~~p~~~~e~a~~~~kl~--giis~et~l~~l~~vd~~~E~eri~~E~~~~-~~~~~~~~~~~d~~~~d~~~ee 469 (470) T protein:vir:99 394 DFKFTRNLPEDMASAIDNAKNAE--GIVSKKTQLGMIPDIEPDAEMKQIAKEKADA-IKQTQQLSMPIDILKRDNNAEE 469 (470) T ss_pred eEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHHHhhcCCCCcCCCCCCccC Confidence 99999999999999999999885 8999999999999984 2233343333221 111111111 101 111111 No 21 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=100.00 E-value=2.5e-81 Score=462.47 Aligned_cols=407 Identities=21% Similarity=0.263 Sum_probs=331.1 Q ss_pred ccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEE Q lcl|Aclame:pro 39 ELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYL 118 (456) Q Consensus 39 ~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~ 118 (456) +++++.+++++..++++++|||++|||+.+++++++||+.. |.+....++++|++|+|+.++.++++++++||+||+ T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~~ivd~~~~~l~~~gf~~~---d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~ 77 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCGLIANASVHRLLALGVTGP---DGEPDTRASRWWQANRLDSRQKLVWRMAMAQSAGYM 77 (434) T ss_pred CCCCCccHHHHHhhhhhhccchHHHHHHHHhhhccCceecC---CCchHHHHHHHHHhcChhHHHHHHHHHHhhcCceEE Confidence 88999999999998889999999999999999999999864 344567799999999999999999999999999999 Q ss_pred EEEeCCCC-------ceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccce Q lcl|Aclame:pro 119 TCWRRDDG-------TATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRR 191 (456) Q Consensus 119 ~v~~~~~g-------~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (456) +||.++++ .++|++++|++++++||+..++ +.+++++|........+..+|+++..+.+.......... T Consensus 78 ~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~-~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (434) T protein:vir:98 78 LVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGE-PLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRERTGARL--- 153 (434) T ss_pred EEecCCCcccccCCceeEEEEeccceeEEEEeCCCCc-eEEEEEEEEeccCCceEEEEEEeCcEEEEEEeecccccc--- Confidence 99987654 4679999999999999988765 777888887665555566677766666554332111100 Q ss_pred eeccCCCcc----cccccccccCceeEEEEecC-----CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC Q lcl|Aclame:pro 192 LVTRISDSW----VPVGDAVVTGSPPPVVVYQN-----PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTE 262 (456) Q Consensus 192 ~~~~~~~~~----~~~~~~~~~~~~~pv~~~~n-----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~ 262 (456) ......+ ......+|.+++||+++|.| .+|+|+|+++++|||+||+++|++++.+++|++|+++++|.. T Consensus 154 --~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~ 231 (434) T protein:vir:98 154 --PWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGEDPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWIKGHK 231 (434) T ss_pred --ccccccceecccccccccCCCCccceEEeccCCCcCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcCCC Confidence 0011111 12234578999999998754 478999999999999999999999999999999999999988 Q ss_pred ccccccccchhhhhhhhhhhhhccceeecC-CCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHH Q lcl|Aclame:pro 263 HGLPNVDENGNAIDYASIFEAAPGALWELP-PGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEG 341 (456) Q Consensus 263 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~A 341 (456) ...+.. +.++.+.....+....+.+|..+ +++++++++++++++|+++++.++++|++++++|++.|++.++|+||+| T Consensus 232 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~~~~~~n~Sg~A 310 (434) T protein:vir:98 232 FAKRTD-PATGMTVVDQPFVPSPSAVWASEGENTQFGQLDATDLSGFLKEHASDVRDMLTISQTPTYLYATDLVNISADT 310 (434) T ss_pred cccccc-cccccchhhhhhhccccccccCCCCCceEEEecCcchHHHHHHHHHHHHHHhcccCCCHHHhccccCChHHHH Confidence 776653 44445445556667778888775 6889999999999999999999999999999999999998888999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhC Q lcl|Aclame:pro 342 AHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL 420 (456) Q Consensus 342 l~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~ 420 (456) |++++.+|++||+.+++.|+++|++++++++++.|.. +..+++++|+++.|+|.+++||+++||+++|+ |.+++++++ T Consensus 311 l~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ada~~kl~~~g~-~~e~~~~~l 389 (434) T protein:vir:98 311 IGALDILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANPAHVTMAVKADAATKLKSIGY-PLDVIAEEL 389 (434) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCCCCCCHHHHHHHHHHHHhcCC-cHHHHHHhC Confidence 9999999999999999999999999999999999865 44579999999999999999999999998885 889999999 Q ss_pred CCCccHHHHHHHHHHHHHHHHHhhc-------ccccccCCCCC Q lcl|Aclame:pro 421 NYNADQIKQDDLDRAREQITLFAGN-------PVQRPQEDGSR 456 (456) Q Consensus 421 ~~~~~~~~~~e~~~~~e~~~~~~~~-------~~~~~~~~Gs~ 456 (456) |+++++++++++++.++...+.... .+..|+++|+- T Consensus 390 g~~~~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 432 (434) T protein:vir:98 390 DESPARVRRIVAGAASQALLAASLLPAPGAPSAGNVPDSGGAV 432 (434) T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccCCC Confidence 9999999888877665543221111 11123333322 No 22 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=100.00 E-value=5.8e-82 Score=465.97 Aligned_cols=385 Identities=12% Similarity=0.054 Sum_probs=331.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD 83 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d 83 (456) |+ .++|++|.+++..+.+|+.++.+||+|+|+++++++..+++++..+ ++++|||+++||++++++..+||+.. | T Consensus 1 ~~-~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~-~~v~nw~~~iVds~a~rl~~~Gf~~~---d 75 (409) T protein:vir:16 1 MT-EKGIGYLRFKLSVHKRRAEMRYEQYAMKHVDRFKGITIPQALSQQY-RSILGWCAKGVDSLADRLVFREFEND---D 75 (409) T ss_pred CC-HHHHHHHHHHHHHHhHHHHHHHHHHhccCchhhcchhhhHHHHHHH-hhhcChhHHHHHHhHhhcccccccCc---c Confidence 43 4489999999999999999999999999999999999999987655 57889999999999999999999742 2 Q ss_pred ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEE-ecCC Q lcl|Aclame:pro 84 SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWR-DLDA 162 (456) Q Consensus 84 ~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~-~~~~ 162 (456) ..+|++|++|+|+..+.++++++++|||||++|+++++|.++|++++|++++++|||.+++ +.+++++|. +..+ T Consensus 76 ----~~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~sP~~~~~i~D~~~~~-~~~a~~~~~~d~~~ 150 (409) T protein:vir:16 76 ----FTVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVIEATNATGIIDPITGL-LTEGYAVLERDENN 150 (409) T ss_pred ----hHHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEeeccccc-ceeeeEEEEecCCC Confidence 2489999999999999999999999999999999999999999999999999999997764 555566554 4456 Q ss_pred ceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC------CCCchH-HHHHHHHH Q lcl|Aclame:pro 163 ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGMGEV-EPHIDIIN 235 (456) Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~s~~-~~v~~liD 235 (456) +.+..++|+++.++++...... | ...+|.+|+||+|+|.|. +|.|+| ++|++|+| T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~---------------~---~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~d 212 (409) T protein:vir:16 151 NVVLEAHFLPDRTDYYYRDSRN---------------N---ISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQS 212 (409) T ss_pred ceEEEEEEecCcEEEEEecCcc---------------c---cceecCCCCcceEEecccccccccCCccccchhHHHHHH Confidence 6677889999999888653321 1 124688999999999764 688988 68999999 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCC-----CcceeeccccchHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPP-----GVDIWESQANDFTPMLS 310 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 310 (456) ++|++++++++.++||++|+++++|.+. +|+++ ..+....+++|.++. +++++||+++++++|++ T Consensus 213 a~~r~~~~~~~~~e~~a~pqr~i~G~d~-------d~~~~---~~~~~~~~~i~~~~~d~~g~~~~v~q~~~~~l~~~~~ 282 (409) T protein:vir:16 213 NAKRTLERADVTAEFYSFPQKYVTGLSD-------DAEPM---ETWKATVSSMLQFTKDEDGDKPTLGQFTQPSMSPFTE 282 (409) T ss_pred HHHHHHHHHHHHHHHhcChhheeEecCC-------CCCcc---chhhhhhhHhhccCCCCCCCCceEEecCCCChhHHHH Confidence 9999999999999999999999999743 33332 356777888988763 35799999999999999 Q ss_pred HHHHHHHHHHhhcCCChhhhccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccce Q lcl|Aclame:pro 311 AIKEHIRQLSSATKTPLPMLMPDSANQ-SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-----EDTVD 384 (456) Q Consensus 311 ~~~~~~~~i~~~t~~p~~~~~~~~~n~-Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-----~~~i~ 384 (456) +++.++++|+++|+||+++||+.+.|+ ||+||++++.+|..|++++++.|+.+|++++++++++.|... ..+++ T Consensus 283 ~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~ 362 (409) T protein:vir:16 283 QLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTK 362 (409) T ss_pred HHHHHHHHHhhhcCCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccce Confidence 999999999999999999999999995 999999999999999999999999999999999999976532 25689 Q ss_pred EEecCCC---CCCHHHHHHHHHHHHhcCC--CcHHHHHHhCCCCccH Q lcl|Aclame:pro 385 VSFESPD---RVTLGEKYSAASLAKAAGE--SWASIRRNILNYNADQ 426 (456) Q Consensus 385 v~f~~~~---~~~~~e~ad~~~kl~~~g~--~s~~t~~~~~~~~~~~ 426 (456) +.|+++. .++.++.||+++||+++|. ...++.++.+||++++ T Consensus 363 v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 363 PKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred EEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 9999655 6668999999999999864 4468899999999876 No 23 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=100.00 E-value=8.8e-81 Score=459.47 Aligned_cols=435 Identities=10% Similarity=0.005 Sum_probs=334.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccc----hhhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTS----AAWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~----~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) --.++-.++|..++.+|..+++||+++.+||+|+|+|+..++... ....+.++|+++||+++|||+.++||+|+|+ T Consensus 31 ~~~e~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~ 110 (483) T protein:vir:12 31 NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPI 110 (483) T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccchHHHHHHHHhhhhcccCc Confidence 113334568899999999999999999999999999876654322 2233567789999999999999999999999 Q ss_pred ccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 77 ~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) +++.+ +++..+.++++| .|+++..+.+++++++++|+||+++|.|++|.+++++++|++++++||+....++.+++|+ T Consensus 111 ~~~~~-d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~ 188 (483) T protein:vir:12 111 AFKHT-DDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRM 188 (483) T ss_pred eeccC-ChHHHHHHHHHH-hccHHHHHHHHHHHHhhCCeEEEEEEEcCCCceEEEEEcccceEEEEcCCCCCceEEEEEE Confidence 99653 445556666665 4789999999999999999999999999999999999999999999998888889999999 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHHHH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDIIN 235 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~liD 235 (456) |...+ ...+++|+++.+++|............ ....+......+|.++.|||++|. |++|+|+|+++++||| T Consensus 189 ~~~~~--~~~~~~y~~~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liD 261 (483) T protein:vir:12 189 YKLEN--ETKVEYWDKVTVNYYVYENGSLIPDYS-----NNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLID 261 (483) T ss_pred EEeec--ceEEEEEecCeEEEEEEeCCeeeeccc-----ccccccccccccCCCCccceEEecCCCCCCCchhhHHHHHH Confidence 98654 345789999999988654332211111 111223345677889999998885 5789999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHHHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSAIKE 314 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (456) +||.++|++++.+++|++|+++++|...... ++.... .....++..+.++++..+ .+.+.+.+..+++. T Consensus 262 a~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 331 (483) T protein:vir:12 262 AYNRRLSDLSNTFKDSNELTYVLTNYDDQEL--PEFKRL--------LRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 331 (483) T ss_pred HHHHHHHHHHHHHHHhcCceeeeecCCcccc--hhHHHh--------hhhccccccCCCCcceEEeecCCHHHHHHHHHH Confidence 9999999999999999999999999754321 111111 112233334444443322 24566778888889 Q ss_pred HHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecCCCCC Q lcl|Aclame:pro 315 HIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESPDRV 393 (456) Q Consensus 315 ~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~~~~~ 393 (456) +.+.|+..+++|..+++.+++|+||+||++++.+|..||+.+++.|+++|++++++++++.|.. +..+++|+|+++.|+ T Consensus 332 l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~ 411 (483) T protein:vir:12 332 LYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVA 411 (483) T ss_pred HHHHHHHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccceeeEEeCCCCCC Confidence 9999999999999888888889999999999999999999999999999999999999988854 446789999999999 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) |.++.|++++|+ +|++|++|+++++|+++|..+++++.+++++...-..........++++ T Consensus 412 ~~~~~a~~~~kl--~GiiS~et~~~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~ 472 (483) T protein:vir:12 412 NTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADGAQ 472 (483) T ss_pred CHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccccccCCcc Confidence 999999999988 5899999999999999875555544333222111111111222233332 No 24 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=100.00 E-value=1.2e-80 Score=458.69 Aligned_cols=435 Identities=11% Similarity=0.017 Sum_probs=332.2 Q ss_pred CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccch----hhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MTA--STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~~--~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~----~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) +.. +.-.++|++|+.+|..+++|++++.+||+|+|+|+..+++... ...+.++|+++||+++|||+.++|++|+ T Consensus 38 ~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~ 117 (492) T protein:vir:97 38 TNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGK 117 (492) T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHHHhhhhccc Confidence 221 2334578889999999999999999999999999766544321 2235667899999999999999999999 Q ss_pred CcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 75 GITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 75 ~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) |+++..+ +++..+.++++| .|+++..+.++++++++||+||+++|.+++|.+++++++|++++++||+...+++.+++ T Consensus 118 p~~~~~~-d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~i~d~~~~~~~~~~v 195 (492) T protein:vir:97 118 PIAFKHT-DDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFI 195 (492) T ss_pred CceeccC-chHHHHHHHHHH-hccHHHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 9998653 445566666665 58999999999999999999999999999999999999999999999988788899999 Q ss_pred EEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHH Q lcl|Aclame:pro 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDI 233 (456) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~l 233 (456) |+|...+ ...+.+|+++.+++|............ ....+......+|.++.|||++|. |++|+|+|+++++| T Consensus 196 r~~~~~~--~~~~~~y~~~~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~l 268 (492) T protein:vir:97 196 RMYKLEN--ETKVEYWDKVTVNYYVYENGSLIPDYS-----NNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTL 268 (492) T ss_pred EEEeecc--ceeEEEEecCeEEEEEEecCeeeeccc-----ccccccccccccCCCCCcceEEecCCCCCCCchHhHHHH Confidence 9998654 346789999999988754332211111 112233345677889999998885 57899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSAI 312 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 312 (456) ||+||+++|++++.++++++|+++++|...... .+.... .....++..+.++++..+ .+.+.+.+...+ T Consensus 269 iDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 338 (492) T protein:vir:97 269 IDAYNRRLSDLSNTFKDSNELTYVLKNYDDQEL--PEFKRL--------LRYYGAIKVSDNGGVDTIQVEVPVENSKKYL 338 (492) T ss_pred HHHHHHHHHHHHHHHHHhccceeeeecCCcccc--hhHHHH--------HhhccceecCCCCcceeEeccCCHHHHHHHH Confidence 999999999999999999999999999754321 111111 112223334444433222 234567777888 Q ss_pred HHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecCCC Q lcl|Aclame:pro 313 KEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESPD 391 (456) Q Consensus 313 ~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~~~ 391 (456) +.+..+|+..+++|+..++.+++|+||+||++++.+|..||+.+++.|+.+|++++++++++.|.. +..+++++|+++. T Consensus 339 ~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~ 418 (492) T protein:vir:97 339 DELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNK 418 (492) T ss_pred HHHHHHHHHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEEecCCC Confidence 888889999999999888888889999999999999999999999999999999999999988854 4567999999999 Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHH--HHHHHhhcc------cccccCCCCC Q lcl|Aclame:pro 392 RVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRARE--QITLFAGNP------VQRPQEDGSR 456 (456) Q Consensus 392 ~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e--~~~~~~~~~------~~~~~~~Gs~ 456 (456) |+|.++.|++++|| +|++|++|+++++|++++..+++++.++++ +...+.+.. ++...+.+.+ T Consensus 419 p~~~~e~a~~~~kl--~G~iS~et~l~~l~~v~d~~~Eleri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) T protein:vir:97 419 VANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) T ss_pred CCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhccccCCCCCCccccccccc Confidence 99999999999988 589999999999999987555544322221 122111111 1111111111 No 25 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=100.00 E-value=2.3e-81 Score=462.68 Aligned_cols=397 Identities=14% Similarity=0.083 Sum_probs=325.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD 83 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d 83 (456) |+.. .+++|.+++..+++|++++.+||+|+|+++++++..+++++..+ +++.|||+++||++++++..+||+.. | T Consensus 1 m~~~-~i~~L~~~~~~~~~r~~~~~~yy~g~~~~~~~~~~~p~~~~~~~-~~v~nw~~~~Vd~~a~rl~~~Gf~~~---d 75 (422) T protein:vir:97 1 MNYM-GMGYLRRKLALFKTGVDKRYRYYAMDDRDDTRSIVMPNNVREMY-RSVLEWTAKGVDSLADRIIFREFTND---D 75 (422) T ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhcCccccHHHHHHH-HhhcchhHHHHHHHHhccccceeeCC---c Confidence 4433 68888999999999999999999999999999999999997654 57889999999999999999999853 2 Q ss_pred ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC-CCceEEEEEccceEEEEeeCCCCceeEEEEEEEE-ecC Q lcl|Aclame:pro 84 SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD-DGTATITADSPETMVVSVDPLQPWRIRAAMRWWR-DLD 161 (456) Q Consensus 84 ~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~-~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~-~~~ 161 (456) ..+|++|++|+|+..+.++++++++|||||++|++++ +|.++|++++|++++++|||.+++ +.+++++|. +.+ T Consensus 76 ----~~l~~~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i~D~~~~~-~~~a~~~~~~~~~ 150 (422) T protein:vir:97 76 ----FNAWEIFKANNPDIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGILDPTTFL-LTEGYAILESDSN 150 (422) T ss_pred ----hhHHHHHHhcChHHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEEEeCCCCc-ceeeEEEEEecCC Confidence 2489999999999999999999999999999999986 788999999999999999998775 445555554 444 Q ss_pred CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC------CCCchH-HHHHHHH Q lcl|Aclame:pro 162 AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGMGEV-EPHIDII 234 (456) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~s~~-~~v~~li 234 (456) +..+ .++|.++.++++.... +.+ ...+|.+++||+|+|.|. +|.|+| ++|++|+ T Consensus 151 ~~~~-~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~ 211 (422) T protein:vir:97 151 GNPT-LEAYFTDKDIWYYPKK---------------GKP---YNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQ 211 (422) T ss_pred CcEE-EEEEEcCceEEEEcCC---------------Ccc---ccccCCCCCcceEEecccCCCccccCccccchhHHHHH Confidence 4444 3444444444333221 111 134688999999999764 688998 7899999 Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCC-----cceeeccccchHHHH Q lcl|Aclame:pro 235 NRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG-----VDIWESQANDFTPML 309 (456) Q Consensus 235 D~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 309 (456) |+||++++++++.++|+++|+++++|.+. +|+++ ..+....+++|.++.+ ++++||+++++++|+ T Consensus 212 da~~r~~~~~~~~~e~~a~pqr~i~G~d~-------d~~~~---~~~~~~~~~i~~~~~de~~~~~~v~q~~~~~l~~~~ 281 (422) T protein:vir:97 212 KAAKRTLERAEVTAEFYSFPQKYVLGMDP-------DAKPM---EKWRATVSTLLEISKDEDGDKPTVGQFTTASMAPFM 281 (422) T ss_pred HHHHHHHHHHHHHHHHhcchhhhhcccCc-------ccccC---chhhhhhhhhhccCCCCCCCcceeeecCCCChhHHH Confidence 99999999999999999999999999743 33332 3466677788887643 578999999999999 Q ss_pred HHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----cccc Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-----EDTV 383 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-----~~~i 383 (456) ++++.++++|+++|+||+++||+.+.| +||+||++++.+|.+||+++++.|+.+|++++++++++.|... ..++ T Consensus 282 ~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~ 361 (422) T protein:vir:97 282 EHLKMYASLFAGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDT 361 (422) T ss_pred HHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccc Confidence 999999999999999999999999888 5999999999999999999999999999999999999977532 3468 Q ss_pred eEEecCCCCCC---HHHHHHHHHHHHhc--CCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 384 DVSFESPDRVT---LGEKYSAASLAKAA--GESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 384 ~v~f~~~~~~~---~~e~ad~~~kl~~~--g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ++.|+++.+.+ .++.||+++||+++ |+.+++++++++||++.+.+..+.++.+ .|| T Consensus 362 ~~~w~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~---------------~d~ 422 (422) T protein:vir:97 362 VIKWEPLFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLTGVKGADKPIPAITEVT---------------TDG 422 (422) T ss_pred eEEEccCCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHcCCCchhHHHHHHHhhh---------------ccC Confidence 89999655555 88999999999988 7899999999999986544433333221 111 No 26 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=100.00 E-value=2.1e-80 Score=457.40 Aligned_cols=435 Identities=11% Similarity=0.014 Sum_probs=330.6 Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccc----hhhhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MT---ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTS----AAWRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~---~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~----~~~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) +. .++-.++|+.++.+|..+++|++++.+||+|+|+|...++... ....+.++|+++||+++|||+.++|++| T Consensus 37 ~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~I~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G 116 (492) T protein:vir:94 37 RTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVG 116 (492) T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccchHHHHHHHHHhhhcc Confidence 11 2344557888999999999999999999999999876654321 1223456789999999999999999999 Q ss_pred CCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEE Q lcl|Aclame:pro 74 NGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAA 153 (456) Q Consensus 74 ~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) +|++++.+ |++..+.++++| .|+++..+.+++++++++|+||+++|.+++|.+++++++|++++++||+...+++.++ T Consensus 117 ~p~~~~~~-d~~~~~~l~~~~-~n~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~~~~~~~p~~~~~v~d~~~~~~~~a~ 194 (492) T protein:vir:94 117 KPIAFKHT-DDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAF 194 (492) T ss_pred cCceeccC-chHHHHHHHHHH-hccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEE Confidence 99999654 445566666666 5899999999999999999999999999999999999999999999998888889999 Q ss_pred EEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHH Q lcl|Aclame:pro 154 MRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHID 232 (456) Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~ 232 (456) +|+|...+ ...+.+|++..+++|........... .....+......+|.++.|||++| +|++|+|+|+++++ T Consensus 195 ir~~~~~~--~~~~~~y~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~ 267 (492) T protein:vir:94 195 IRMYKLEN--ETKVEYWDKVTVNYYVYENGSLIPDY-----SNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKT 267 (492) T ss_pred EEEEeecc--ceeEEEEecCeEEEEEEecCeeeecc-----ccccccccccccccCCCccceEEecCCCCCCCchHHHHH Confidence 99998654 34578999999998865432221111 111223345567788999998888 46789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHHHH Q lcl|Aclame:pro 233 IINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSA 311 (456) Q Consensus 233 liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 311 (456) |+|+||+++|++++.++++++|+++++|....... +.... .....++.++.++++..+ .+.+.+.+..+ T Consensus 268 liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 337 (492) T protein:vir:94 268 LIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELP--EFKRL--------LRYYGAIKVSDNGGVDTIQVEVPVENSKKY 337 (492) T ss_pred HHHHHHHHHHHHHHHHHHhcCceeeeecCCcccch--hhHHH--------HhhccceecCCCCcceeEeccCCHHHHHHH Confidence 99999999999999999999999999997543211 11111 112233334444443222 23455666777 Q ss_pred HHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecCC Q lcl|Aclame:pro 312 IKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESP 390 (456) Q Consensus 312 ~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~~ 390 (456) ++.+..+|+..+++|...++.+++|+||+||++++.+|..||+.+++.|+.+|++++++++++.|.. +..+++++|+++ T Consensus 338 ~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~ 417 (492) T protein:vir:94 338 LDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYN 417 (492) T ss_pred HHHHHHHHHHHhCCcCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEEecCC Confidence 7788888888899998888888889999999999999999999999999999999999999988864 346799999999 Q ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH--HHHHHHhhccc----ccccCC--CCC Q lcl|Aclame:pro 391 DRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR--EQITLFAGNPV----QRPQED--GSR 456 (456) Q Consensus 391 ~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~--e~~~~~~~~~~----~~~~~~--Gs~ 456 (456) .|.|.++.++++++++ |++|++|+++++|++++..+++++.+++ +.+..+..... ..++++ +.+ T Consensus 418 ~p~~~~e~~~~~~kl~--giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) T protein:vir:94 418 KVANTELQVQTAQQSM--GIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) T ss_pred CCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCccccCCccc Confidence 9999999999999884 8999999999999988755554433222 22222211111 111111 111 No 27 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=100.00 E-value=2.4e-80 Score=457.13 Aligned_cols=441 Identities=15% Similarity=0.065 Sum_probs=332.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) -+.++++.+.+.+.+|...+++||+++++||+|+|+++..+...+... +.++|+++||+++||++.++|++|+|++++. T Consensus 37 ~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~ 115 (511) T protein:vir:10 37 DLLQNVNEVSKCIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQD 115 (511) T ss_pred hcccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccc-cCcceeecchHHHHHHHHhhhhcccCceeec Confidence 345555554444445556678999999999999999987765554443 3456899999999999999999999999975 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) + +++....++++|+.|+++.++.+++++++++|+||+++|.+++|++++++++|++++++||+....++.+++|+|... T Consensus 116 ~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~ 194 (511) T protein:vir:10 116 D-DKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTK 194 (511) T ss_pred C-chHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEee Confidence 4 455678899999999999999999999999999999999999999999999999999999998888899999998753 Q ss_pred C------CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC-CCCCchHHHHHHH Q lcl|Aclame:pro 161 D------AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN-PDGMGEVEPHIDI 233 (456) Q Consensus 161 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n-~~~~s~~~~v~~l 233 (456) . ....++.+|+++.+++|......+... .+......+|+++.|||++|.| ++|+|+|+++++| T Consensus 195 ~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~l 264 (511) T protein:vir:10 195 PIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKL----------TPRENGFESHSFERMPITEFSNNERRKGDYEKVITL 264 (511) T ss_pred ecccCccceEEEEEEEeCCcEEEEEecCCCcccc----------cccccccccccCcceeEEEecCCCCCCCchhhhHHH Confidence 2 234567899999999987654332211 1223445678999999988864 6799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccc---ccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLP---NVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPML 309 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~---~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 309 (456) ||+||.++|++++.++++++|+++++|...... ..+..+..+....... ..+.....++++++..+ .+.+.+.++ T Consensus 265 iDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~l~~~~~~~~~e 343 (511) T protein:vir:10 265 IDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVY-ADSEGRETEGSVDGGYIYKQYDVQGTE 343 (511) T ss_pred HHHHHHHHHHHHHHHHHhhCceeeeeccccCCchhhccchhccceecccccc-cccccccCCCCcceeEEeecCCHHHHH Confidence 999999999999999999999999999543211 1111111111100000 11111122334444332 245667788 Q ss_pred HHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------Ccccc Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-------SVEDT 382 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-------~~~~~ 382 (456) ++++.+.++|+..+++|...++++++|+||+||+++++++.+||..+++.|+++|++++++++++.+. .+..+ T Consensus 344 ~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~ 423 (511) T protein:vir:10 344 AYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNT 423 (511) T ss_pred HHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccce Confidence 88899999999999999999988889999999999999999999999999999999999999876432 23347 Q ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH--HHHHHHhhcccccc-------cCC Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR--EQITLFAGNPVQRP-------QED 453 (456) Q Consensus 383 i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~--e~~~~~~~~~~~~~-------~~~ 453 (456) ++++|+++.|+|.++.+++++||. |++|.+|+++++|++++..+++++.+++ +++..........+ .++ T Consensus 424 i~i~f~~~~p~d~~~~~~~~~kl~--G~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (511) T protein:vir:10 424 VRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDD 501 (511) T ss_pred eeEEeCCCCCcCHHHHHHHHHHHh--ccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCC Confidence 899999999999999999999984 8999999999999988755544432222 22222222221111 122 Q ss_pred CCC Q lcl|Aclame:pro 454 GSR 456 (456) Q Consensus 454 Gs~ 456 (456) .++ T Consensus 502 ~~~ 504 (511) T protein:vir:10 502 DTK 504 (511) T ss_pred ccc Confidence 222 No 28 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=100.00 E-value=2.3e-80 Score=457.18 Aligned_cols=429 Identities=13% Similarity=0.018 Sum_probs=336.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) ++.++++ +|++++.+|..+.+||+++++||+|+|+|+..+.+. ..+.++|+++||+++||++.++||+|+|+++.. T Consensus 13 ~~~~~~~-~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~---~~~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~ 88 (499) T protein:vir:10 13 VNEPNIE-AINYAIRELQNRKKRLDKLSDYYNGKQEIEKHEFDN---ATVEAANVMVNHAKYITDMNVGFMTGNPVKYVA 88 (499) T ss_pred hhcCCHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhcCCcCc---CCCCcceeecchHHHHHHHHhhhhcccCceeec Confidence 6677766 588899999999999999999999999997654332 234567899999999999999999999999875 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc-----------------eEEEEEccceEEEEee Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT-----------------ATITADSPETMVVSVD 143 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~-----------------~~i~~~~p~~~~~i~d 143 (456) . +++....++++|+.|+|+.++.++++.++++|+||+++|.+++|. ++++.++|++++++|+ T Consensus 89 ~-~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~v~~ 167 (499) T protein:vir:10 89 E-KGKNIDDILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTELKIEVIDPRATVVVCD 167 (499) T ss_pred C-ChhHHHHHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccceEEEEEcccceEEEec Confidence 4 455677899999999999999999999999999999999999874 5689999999999999 Q ss_pred CCCCceeEEEEEEEEecC----CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec Q lcl|Aclame:pro 144 PLQPWRIRAAMRWWRDLD----AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ 219 (456) Q Consensus 144 ~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~ 219 (456) +...+++.+++++|...+ ....++++|+++.+++|........ .+.+......+|.++.|||++|. T Consensus 168 d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~~g~vPvv~~~ 237 (499) T protein:vir:10 168 DTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEV----------SANDPIVYDGENLFGAVPIIEFR 237 (499) T ss_pred CCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccc----------cCcceecccccCCCCccceEEec Confidence 988899999999987543 2356788999999999875433221 12233455678999999999885 Q ss_pred -CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceee--cCCCcc Q lcl|Aclame:pro 220 -NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWE--LPPGVD 296 (456) Q Consensus 220 -n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~--~~~~~~ 296 (456) |++|+|+|+++++|||+||+++|++++.++++++|+++++|...+.. .++.. ....+.++. .+++++ T Consensus 238 n~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~d 307 (499) T protein:vir:10 238 NNEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFGLGDD---KDDIQ-------RLKRGAIEAPPREEGAD 307 (499) T ss_pred CCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccccc---cchhh-------hhhhcceeccCCCCCCc Confidence 57799999999999999999999999999999999999999765432 11111 112233433 334555 Q ss_pred eeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 297 IWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE 375 (456) Q Consensus 297 ~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~ 375 (456) +..+. +.+.+.+.+.++.+.++|+..+++|...++.+++|+||+||+++++++.+||..+++.|+++|++++++++++. T Consensus 308 ~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~ 387 (499) T protein:vir:10 308 IEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEKFMGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIV 387 (499) T ss_pred ceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 44433 34667788888999999999999998888878889999999999999999999999999999999999998875 Q ss_pred CC----CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH--HHHHhhc-ccc Q lcl|Aclame:pro 376 GE----SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ--ITLFAGN-PVQ 448 (456) Q Consensus 376 g~----~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~--~~~~~~~-~~~ 448 (456) +. .+..+++++|+++.|.|.++.|++++|| +|++|.+|+++++|++++..+++++.+++++ +...... .+. T Consensus 388 ~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~ 465 (499) T protein:vir:10 388 NIKGANDDASGCKISLVANIPSNLSDVVNNVKNA--DGIIPRKYTYSWLPDVDNPQDVIDEMNQQDAETIKKNQEALRGQ 465 (499) T ss_pred hccCCccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhccC Confidence 43 2445789999999999999999999998 5899999999999998775554443222211 1111100 011 Q ss_pred cc---cCCCCC Q lcl|Aclame:pro 449 RP---QEDGSR 456 (456) Q Consensus 449 ~~---~~~Gs~ 456 (456) .| .++++. T Consensus 466 ~~~~~~~~~~~ 476 (499) T protein:vir:10 466 DPDRLELEDKQ 476 (499) T ss_pred CCCCCCCCCCC Confidence 11 111111 No 29 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=100.00 E-value=2.3e-80 Score=457.14 Aligned_cols=429 Identities=12% Similarity=0.041 Sum_probs=332.0 Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcc Q lcl|Aclame:pro 1 MT---ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGIT 77 (456) Q Consensus 1 ~~---~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~ 77 (456) |+ .+|++ .|..++.+|..+++||+++.+||+|+|+|.......+ .+.++|+++||+++|||+.++|++|+|++ T Consensus 11 ~~~~~~~~~~-~i~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~~---~~~~~ki~~n~~~~ivd~~~~~l~g~~~~ 86 (453) T protein:vir:73 11 YSRDEEITDK-VVNDFMKKHQEEVERYEYLGNMYKGIMEISSQKAKDS---WKPDNRLTNNFAKYIVDTFVGYFNGIPIK 86 (453) T ss_pred ccccccCCHH-HHHHHHHHHHHHHHHHHHHHHHhccccchhcCCCCCc---cCccceeecchHHHHHHHhhhhhcccCce Confidence 33 44444 5777889999999999999999999999976543322 35577899999999999999999999999 Q ss_pred cCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEE Q lcl|Aclame:pro 78 VGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWW 157 (456) Q Consensus 78 ~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 157 (456) +..+ ++...+.++++|+.|+|+.++.+++++++++|+||+++|++++|.+++++++|.+++++||+..++.+.++++++ T Consensus 87 ~~~~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~dd~~~~~~~~~i~~~ 165 (453) T protein:vir:73 87 KTHD-DKSVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESEVIYCSPLNVFMVYDDSIKQKPLFAVYYG 165 (453) T ss_pred eecC-ChHHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEEeCCCCceeEEEEEEE Confidence 9654 445667899999999999999999999999999999999999999999999999999999998888899999988 Q ss_pred EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHHHHHH Q lcl|Aclame:pro 158 RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDIINR 236 (456) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~liD~ 236 (456) .+.++ ..++++|+++.+++|.... +.+......+|.++.|||++| +|++|+|+|+++++|+|+ T Consensus 166 ~~~~~-~~~~~vyt~~~i~~~~~~~---------------~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~liDa 229 (453) T protein:vir:73 166 FDEEG-NLSGTVYTLLETISITGKA---------------GEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPVHSLINS 229 (453) T ss_pred EecCc-eEEEEEEeCCeEEEEEecC---------------CceEEccceeccCCceeEEEecCCCCCCcchhhHHHHHHH Confidence 76554 5678999999999886432 233445567899999999987 467899999999999999 Q ss_pred HHHHHHHHHHHHHHHhhhHHhhcCCCcccccccc-chhhhhhhhhhhhhccceeecCCC--cceeeccccchHHHHHHHH Q lcl|Aclame:pro 237 INRAELQLLSTMAIQAFRQRALKSTEHGLPNVDE-NGNAIDYASIFEAAPGALWELPPG--VDIWESQANDFTPMLSAIK 313 (456) Q Consensus 237 ~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 313 (456) ||+++|++++.++++++|+++++|...+.+.... .+..... ......+.....+++ +++.+. +.+.+++..+++ T Consensus 230 ~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~l~~-~~~~~~~~~~~~ 306 (453) T protein:vir:73 230 YNKVTSEKANDVEYFSDQYLVFLGAEVDEEDAKNIKDNRLIN--FFDKNSNGQGTNAAKVDVKFLDK-PDSDVQTENLLN 306 (453) T ss_pred HHHHHHHHHHHHHHhccceeeeecCCCCchhhhccccccccc--ccccccccccccccCceeEEeee-cCCHHHHHHHHH Confidence 9999999999999999999999998654332211 1111111 111111222222333 444332 345677788888 Q ss_pred HHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CccccceEEecC Q lcl|Aclame:pro 314 EHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE----SVEDTVDVSFES 389 (456) Q Consensus 314 ~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~----~~~~~i~v~f~~ 389 (456) .+..+|+..+++|...+.++ +|+||+||++++.+|.+||+.+++.|+.+|++++++++++.+. .+..+++++|++ T Consensus 307 ~l~~~I~~~s~~p~~~~~~~-gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~ 385 (453) T protein:vir:73 307 RLERSIFQFTMAANISDENF-GNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASNKDAWKDIEYTFTR 385 (453) T ss_pred HHHHHHHHHhCCcccCcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCC Confidence 88889999999998777765 7899999999999999999999999999999999999887643 234578999999 Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHH---HHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 390 PDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDD---LDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 390 ~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e---~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +.|.|.++.|++++|++ |++|.+|+++.+|++++..++++ +|+++...........+..+..|-= T Consensus 386 ~~p~~~~~~a~~~~k~~--giis~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 453 (453) T protein:vir:73 386 NEPKDIKEQAETANILK--GITSEETALSVISVIPDVQAEMEKIKKKKLLQLSLTRTSNLVRMKQMRGNL 453 (453) T ss_pred CCCCCHHHHHHHHHHHh--ccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCcchhhhcCC Confidence 99999999999999885 89999999999999887444443 3332221111111222211222222 No 30 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=100.00 E-value=3.5e-80 Score=456.18 Aligned_cols=440 Identities=15% Similarity=0.056 Sum_probs=330.6 Q ss_pred CCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRI-DDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~-~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) -+.+++++ +..++.+| ..+++||+++++||+|+|+++......+... +.++|+++||+++||++.++||+|+|++++ T Consensus 37 ~~~~~~~~-i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:93 37 DLLQNVNE-VSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred hhhccHHH-HHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcCcccc-cCcceeecchHHHHHHHHhhhhcccCeeec Confidence 22334444 55555554 5678999999999999999987765555443 346789999999999999999999999997 Q ss_pred CCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEe Q lcl|Aclame:pro 80 GSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRD 159 (456) Q Consensus 80 ~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 159 (456) .+ +++..+.++++|+.|+++.++.+++++++++|+||+++|.+++|++++++++|++++++||+....++.+++|+|.. T Consensus 115 ~~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~ 193 (511) T protein:vir:93 115 DD-DKDVLEVIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRT 193 (511) T ss_pred cC-ChHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEe Confidence 54 44567789999999999999999999999999999999999999999999999999999999888889999999864 Q ss_pred cC------CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHH Q lcl|Aclame:pro 160 LD------AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHID 232 (456) Q Consensus 160 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~ 232 (456) .. +...++.+|+++.+++|......+... .+......+|+++.|||++|. |++|+|+|+++++ T Consensus 194 ~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~ 263 (511) T protein:vir:93 194 KPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKL----------TPRENGFESHSFERMPITEFSNNERRKGDYEKVIT 263 (511) T ss_pred eeccccccceEEEEEEEeCCcEEEEEecCCCcccc----------ccccccccccCCCccceEEecCCCCCCCchhhHHH Confidence 32 234568899999999987644332211 122234567889999998885 5789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccc---ccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHH Q lcl|Aclame:pro 233 IINRINRAELQLLSTMAIQAFRQRALKSTEHGLP---NVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPM 308 (456) Q Consensus 233 liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~---~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 308 (456) |||+||.++|++++.++++++|+++++|...... ..+..+..+..... ....+.....++++++..+ .+.+.+.+ T Consensus 264 liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 342 (511) T protein:vir:93 264 LIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPT-VYADSEGRETEGSVDGGYIYKQYDVQGT 342 (511) T ss_pred HHHHHHHHHHHHHHHHHHhhCcceeeecCcccCchhhcccccccceecccc-cccccccccCCCCcceeEEeecCCHHHH Confidence 9999999999999999999999999999543221 11111111100000 0001111122333443332 23466778 Q ss_pred HHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------Cccc Q lcl|Aclame:pro 309 LSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-------SVED 381 (456) Q Consensus 309 ~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-------~~~~ 381 (456) ..+++.+.++|+..+++|...++++++|+||+||+++++++.+||..+++.|+++|++++++++++.+. .+.. T Consensus 343 ~~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~ 422 (511) T protein:vir:93 343 EAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFN 422 (511) T ss_pred HHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccc Confidence 888899999999999999998988889999999999999999999999999999999999998876331 2234 Q ss_pred cceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH--HHHHHHhhcccc-------cccC Q lcl|Aclame:pro 382 TVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR--EQITLFAGNPVQ-------RPQE 452 (456) Q Consensus 382 ~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~--e~~~~~~~~~~~-------~~~~ 452 (456) +++++|+++.|.|.++.|+++++| +|++|.+|+++++|++++..+++++.+++ +++......... ...+ T Consensus 423 ~i~~~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (511) T protein:vir:93 423 TVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD 500 (511) T ss_pred cceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC Confidence 689999999999999999999988 58999999999999998655544432222 122222111111 1223 Q ss_pred CCCC Q lcl|Aclame:pro 453 DGSR 456 (456) Q Consensus 453 ~Gs~ 456 (456) ++++ T Consensus 501 ~~~~ 504 (511) T protein:vir:93 501 DDTK 504 (511) T ss_pred Cccc Confidence 3343 No 31 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=100.00 E-value=4.1e-80 Score=455.79 Aligned_cols=441 Identities=14% Similarity=0.060 Sum_probs=330.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) .+.+++.++.+.+.++...+++||+++++||+|+|+++......+... +.++|+++||+++||++.++||+|+|+++.. T Consensus 37 ~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~ 115 (511) T protein:vir:78 37 DLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQD 115 (511) T ss_pred hhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCccccccCcccccc-cCcceeecchHHHHHHHHhhhhcccCceeec Confidence 334455554444444556678899999999999999876665554443 3456899999999999999999999999975 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) + +++..+.++++|+.|+++.++.++++.++++|+||+++|.+++|++++++++|++++|+||+....++.+++|+|... T Consensus 116 ~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~ 194 (511) T protein:vir:78 116 D-DKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTK 194 (511) T ss_pred C-chHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEee Confidence 4 445677899999999999999999999999999999999999999999999999999999998888899999998753 Q ss_pred C------CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHH Q lcl|Aclame:pro 161 D------AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDI 233 (456) Q Consensus 161 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~l 233 (456) . ....++.+|+++.+++|......+... .+......+|+++.|||++|. |++|+|+|+++++| T Consensus 195 ~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~l 264 (511) T protein:vir:78 195 PIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKL----------TPRENSFESHSFERMPITEFSNNERRKGDYEKVITL 264 (511) T ss_pred eccccccceEEEEEEEeCCcEEEEEecCCCcccc----------cccccccccCcCcccceEEecCCCCCCCchhhhHHH Confidence 2 224567899999999987654332221 112234567889999998885 56799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccc---ccccchhhhhhhhh-hhhhccceeecCCCcceeeccccchHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLP---NVDENGNAIDYASI-FEAAPGALWELPPGVDIWESQANDFTPML 309 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~---~~d~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (456) ||+||.++|++++.++++++|+++++|...... ..+..+..+..... .....+.-...++++++... +.+.++++ T Consensus 265 iDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~e 343 (511) T protein:vir:78 265 IDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYK-QYDVQGTE 343 (511) T ss_pred HHHHHHHHHHHHHHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEee-cCCHHHHH Confidence 999999999999999999999999999543221 11111111111000 00011111111233443332 34567788 Q ss_pred HHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------Ccccc Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-------SVEDT 382 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-------~~~~~ 382 (456) ++++.+.++|+..+++|...++++++|+||+||+++++++.+||..+++.|+.+|++++++++++.+. .+..+ T Consensus 344 ~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~ 423 (511) T protein:vir:78 344 AYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNT 423 (511) T ss_pred HHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc Confidence 88889999999999999999988889999999999999999999999999999999999999876432 23357 Q ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH--HHHHHHhhcccccccC-------C Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR--EQITLFAGNPVQRPQE-------D 453 (456) Q Consensus 383 i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~--e~~~~~~~~~~~~~~~-------~ 453 (456) ++++|+++.|.|.++.+++++||. |++|.+|+++++|++++..+++++.+++ +++..........+.. + T Consensus 424 i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (511) T protein:vir:78 424 VRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDD 501 (511) T ss_pred ceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCC Confidence 899999999999999999999984 8999999999999998754444432222 1222221222111211 1 Q ss_pred CCC Q lcl|Aclame:pro 454 GSR 456 (456) Q Consensus 454 Gs~ 456 (456) -++ T Consensus 502 ~~~ 504 (511) T protein:vir:78 502 DTK 504 (511) T ss_pred Ccc Confidence 111 No 32 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=100.00 E-value=4.1e-80 Score=455.79 Aligned_cols=441 Identities=14% Similarity=0.060 Sum_probs=330.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) .+.+++.++.+.+.++...+++||+++++||+|+|+++......+... +.++|+++||+++||++.++||+|+|+++.. T Consensus 37 ~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~ 115 (511) T protein:vir:96 37 DLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQD 115 (511) T ss_pred hhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCccccccCcccccc-cCcceeecchHHHHHHHHhhhhcccCceeec Confidence 334455554444444556678899999999999999876665554443 3456899999999999999999999999975 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) + +++..+.++++|+.|+++.++.++++.++++|+||+++|.+++|++++++++|++++|+||+....++.+++|+|... T Consensus 116 ~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~ 194 (511) T protein:vir:96 116 D-DKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTK 194 (511) T ss_pred C-chHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEee Confidence 4 445677899999999999999999999999999999999999999999999999999999998888899999998753 Q ss_pred C------CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHH Q lcl|Aclame:pro 161 D------AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDI 233 (456) Q Consensus 161 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~l 233 (456) . ....++.+|+++.+++|......+... .+......+|+++.|||++|. |++|+|+|+++++| T Consensus 195 ~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~l 264 (511) T protein:vir:96 195 PIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKL----------TPRENSFESHSFERMPITEFSNNERRKGDYEKVITL 264 (511) T ss_pred eccccccceEEEEEEEeCCcEEEEEecCCCcccc----------cccccccccCcCcccceEEecCCCCCCCchhhhHHH Confidence 2 224567899999999987654332221 112234567889999998885 56799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccc---ccccchhhhhhhhh-hhhhccceeecCCCcceeeccccchHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLP---NVDENGNAIDYASI-FEAAPGALWELPPGVDIWESQANDFTPML 309 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~---~~d~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (456) ||+||.++|++++.++++++|+++++|...... ..+..+..+..... .....+.-...++++++... +.+.++++ T Consensus 265 iDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~e 343 (511) T protein:vir:96 265 IDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYK-QYDVQGTE 343 (511) T ss_pred HHHHHHHHHHHHHHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEee-cCCHHHHH Confidence 999999999999999999999999999543221 11111111111000 00011111111233443332 34567788 Q ss_pred HHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------Ccccc Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-------SVEDT 382 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-------~~~~~ 382 (456) ++++.+.++|+..+++|...++++++|+||+||+++++++.+||..+++.|+.+|++++++++++.+. .+..+ T Consensus 344 ~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~ 423 (511) T protein:vir:96 344 AYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNT 423 (511) T ss_pred HHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc Confidence 88889999999999999999988889999999999999999999999999999999999999876432 23357 Q ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH--HHHHHHhhcccccccC-------C Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR--EQITLFAGNPVQRPQE-------D 453 (456) Q Consensus 383 i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~--e~~~~~~~~~~~~~~~-------~ 453 (456) ++++|+++.|.|.++.+++++||. |++|.+|+++++|++++..+++++.+++ +++..........+.. + T Consensus 424 i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (511) T protein:vir:96 424 VRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDD 501 (511) T ss_pred ceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCC Confidence 899999999999999999999984 8999999999999998754444432222 1222221222111211 1 Q ss_pred CCC Q lcl|Aclame:pro 454 GSR 456 (456) Q Consensus 454 Gs~ 456 (456) -++ T Consensus 502 ~~~ 504 (511) T protein:vir:96 502 DTK 504 (511) T ss_pred Ccc Confidence 111 No 33 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=100.00 E-value=7.8e-80 Score=454.27 Aligned_cols=434 Identities=9% Similarity=0.025 Sum_probs=334.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccch----hhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~----~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) -...+-.++|+.++++|..+.++++++.+||+|+|+|+.++..... ...+.++|+++||+++||++.++||+|+|+ T Consensus 23 ~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~ 102 (474) T protein:vir:96 23 PKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPV 102 (474) T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCc Confidence 2233456689999999999999999999999999999876543221 123457789999999999999999999999 Q ss_pred ccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 77 ~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) +++.. +++....+++++ .|+++..+.+++++++++|+||+++|.+++|++++++++|++++|+||+.....+.+++|+ T Consensus 103 ~~~~~-~~~~~~~l~~~~-~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~ 180 (474) T protein:vir:96 103 TYAHD-DDKVLDVIHQVL-DTRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVPAEQAIPIWTDKEREQLNAFIRI 180 (474) T ss_pred eeccC-ChHHHHHHHHHH-hccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEE Confidence 99754 344455666665 5889999999999999999999999999999999999999999999999888889999999 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHHHHH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDIIN 235 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~liD 235 (456) |... ...++++|+++.+++|.......... ......+......+|.++.||+++| +|++|.|+|+++++||| T Consensus 181 ~~~~--~~~~~~vy~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liD 253 (474) T protein:vir:96 181 FTFN--GETKVEYWTAETVTYYVYENGGLIPD-----FYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVD 253 (474) T ss_pred Eeec--CeeEEEEEeCCeEEEEEEcCCceeec-----cccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHH Confidence 8754 34578999999999887543321111 1122233445566789999999888 55789999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHHHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSAIKE 314 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (456) +||.++|++++.+++|++|+++++|...... .+... ......++.++.++++..+ .+.+.+.+.+.++. T Consensus 254 a~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~--~~~~~--------~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (474) T protein:vir:96 254 AIDKRLSDVQNMFDESVELIYILRGYEGEDL--SEFME--------GLKYYKAINVSSDGGVETIQVEVPVASTKEYLDM 323 (474) T ss_pred HHHHHHHHHHHHHHHhhcchhhhcCCCcccc--cchhh--------hhhccceeeccCCCceeEEeccCCHHHHHHHHHH Confidence 9999999999999999999999999754311 11101 1122334444444444332 23556778888999 Q ss_pred HHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccceEEecCCCCC Q lcl|Aclame:pro 315 HIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-SVEDTVDVSFESPDRV 393 (456) Q Consensus 315 ~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-~~~~~i~v~f~~~~~~ 393 (456) +.++|+..+++|+..++++++|+||+||+++++++.+||+.+++.|+++|++++++++++.|. .+..+++++|+++.|. T Consensus 324 l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~ 403 (474) T protein:vir:96 324 MRAYIVEFGQGVDFQTDKFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMV 403 (474) T ss_pred HHHHHHHHhCCcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCcc Confidence 999999999999988888888999999999999999999999999999999999999998874 4456799999999999 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHH--HHHHHh-------hcccccccCCCCC Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRARE--QITLFA-------GNPVQRPQEDGSR 456 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e--~~~~~~-------~~~~~~~~~~Gs~ 456 (456) |.++.|+++++ +|++|.+|+++++|+++|..+++++.++++ ....+. +...+....++++ T Consensus 404 ~~~e~a~~~~~---~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 472 (474) T protein:vir:96 404 NDLEQSQIGAQ---SQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQ 472 (474) T ss_pred CHHHHHHHHHH---cCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccc Confidence 99999998754 599999999999999987555554322221 111111 1111111222222 No 34 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=100.00 E-value=7.8e-80 Score=454.27 Aligned_cols=434 Identities=9% Similarity=0.025 Sum_probs=334.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccch----hhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~----~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) -...+-.++|+.++++|..+.++++++.+||+|+|+|+.++..... ...+.++|+++||+++||++.++||+|+|+ T Consensus 23 ~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~ 102 (474) T protein:vir:95 23 PKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPV 102 (474) T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCc Confidence 2233456689999999999999999999999999999876543221 123457789999999999999999999999 Q ss_pred ccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 77 ~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) +++.. +++....+++++ .|+++..+.+++++++++|+||+++|.+++|++++++++|++++|+||+.....+.+++|+ T Consensus 103 ~~~~~-~~~~~~~l~~~~-~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~a~ir~ 180 (474) T protein:vir:95 103 TYAHD-DDKVLDVIHQVL-DTRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFRVPAEQAIPIWTDKEREQLNAFIRI 180 (474) T ss_pred eeccC-ChHHHHHHHHHH-hccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEE Confidence 99754 344455666665 5889999999999999999999999999999999999999999999999888889999999 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHHHHH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDIIN 235 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~liD 235 (456) |... ...++++|+++.+++|.......... ......+......+|.++.||+++| +|++|.|+|+++++||| T Consensus 181 ~~~~--~~~~~~vy~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liD 253 (474) T protein:vir:95 181 FTFN--GETKVEYWTAETVTYYVYENGGLIPD-----FYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVD 253 (474) T ss_pred Eeec--CeeEEEEEeCCeEEEEEEcCCceeec-----cccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHH Confidence 8754 34578999999999887543321111 1122233445566789999999888 55789999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHHHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSAIKE 314 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (456) +||.++|++++.+++|++|+++++|...... .+... ......++.++.++++..+ .+.+.+.+.+.++. T Consensus 254 a~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~--~~~~~--------~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (474) T protein:vir:95 254 AIDKRLSDVQNMFDESVELIYILRGYEGEDL--SEFME--------GLKYYKAINVSSDGGVETIQVEVPVASTKEYLDM 323 (474) T ss_pred HHHHHHHHHHHHHHHhhcchhhhcCCCcccc--cchhh--------hhhccceeeccCCCceeEEeccCCHHHHHHHHHH Confidence 9999999999999999999999999754311 11101 1122334444444444332 23556778888999 Q ss_pred HHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccceEEecCCCCC Q lcl|Aclame:pro 315 HIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-SVEDTVDVSFESPDRV 393 (456) Q Consensus 315 ~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-~~~~~i~v~f~~~~~~ 393 (456) +.++|+..+++|+..++++++|+||+||+++++++.+||+.+++.|+++|++++++++++.|. .+..+++++|+++.|. T Consensus 324 l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~f~~~~p~ 403 (474) T protein:vir:95 324 MRAYIVEFGQGVDFQTDKFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEITFNFNVMV 403 (474) T ss_pred HHHHHHHHhCCcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCCcc Confidence 999999999999988888888999999999999999999999999999999999999998874 4456799999999999 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHH--HHHHHh-------hcccccccCCCCC Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRARE--QITLFA-------GNPVQRPQEDGSR 456 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e--~~~~~~-------~~~~~~~~~~Gs~ 456 (456) |.++.|+++++ +|++|.+|+++++|+++|..+++++.++++ ....+. +...+....++++ T Consensus 404 ~~~e~a~~~~~---~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 472 (474) T protein:vir:95 404 NDLEQSQIGAQ---SQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQ 472 (474) T ss_pred CHHHHHHHHHH---cCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccc Confidence 99999998754 599999999999999987555554322221 111111 1111111222222 No 35 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=100.00 E-value=6e-80 Score=454.89 Aligned_cols=441 Identities=15% Similarity=0.067 Sum_probs=329.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) -+.++++++.+.+.++...+++||+++++||+|+|+++......+... +.++|+++||+++||++.++||+|+|++++. T Consensus 37 ~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~ 115 (511) T protein:vir:99 37 DLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQD 115 (511) T ss_pred hhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccc-cCcceeecchHHHHHHHHHhhhcccCceeec Confidence 234455554444444445678999999999999999987665554444 3466899999999999999999999999975 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) + +++..+.++++|+.|+|+.++.++++.++++|+||+++|.+++|++++++++|++++|+||+.+..++.+++|+|... T Consensus 116 ~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~ 194 (511) T protein:vir:99 116 D-DKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTK 194 (511) T ss_pred C-chHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEee Confidence 4 455678899999999999999999999999999999999999999999999999999999998888899999998743 Q ss_pred C------CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHH Q lcl|Aclame:pro 161 D------AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDI 233 (456) Q Consensus 161 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~l 233 (456) . ....++.+|+++.+++|.......... ........+|+++.|||++|. |++|+|+|+++++| T Consensus 195 ~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~l 264 (511) T protein:vir:99 195 PIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKL----------TPRENGFESHSFERMPITEFSNNERRKGDYEKVITL 264 (511) T ss_pred ecccCccceEEEEEEEeCCcEEEEEecCCccccc----------cccccccccCCCCccceEEecCCCCCCCchhhhHHH Confidence 1 234577899999999987644322111 122244567889999998885 57899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccc---ccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLP---NVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPML 309 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~---~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 309 (456) ||+||.++|++++.+++|++|+++++|...... .....+..+....... ..+.....++++++..+ .+.+.+.+. T Consensus 265 iDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~l~~~~~~~~~e 343 (511) T protein:vir:99 265 IDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVY-ADSEGRETEGSVDGGYIYKQYDVQGTE 343 (511) T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhccCcccCchhhcccccccceecccccc-cccccccCCCCcceeEEeecCCHHHHH Confidence 999999999999999999999999999543221 1111111110000000 01111112233333322 234567788 Q ss_pred HHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------Ccccc Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-------SVEDT 382 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-------~~~~~ 382 (456) .+++.+.++|+..+++|+..++++++|+||+||+++++++.+||..+++.|+.+|++++++++++.+. .+..+ T Consensus 344 ~~~~~L~~~I~~~s~~P~~~~~~~~gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~ 423 (511) T protein:vir:99 344 AYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNT 423 (511) T ss_pred HHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc Confidence 88899999999999999999988889999999999999999999999999999999999999876432 22346 Q ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH--HHHHHHhhcccccc-------cCC Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR--EQITLFAGNPVQRP-------QED 453 (456) Q Consensus 383 i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~--e~~~~~~~~~~~~~-------~~~ 453 (456) ++++|+++.|.|.++.+++++||. |++|++|+++++|++++..+++++.+++ +++..........+ .++ T Consensus 424 i~i~f~~~~p~n~~e~~~~~~kl~--GiiS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (511) T protein:vir:99 424 VRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDD 501 (511) T ss_pred ceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCC Confidence 899999999999999999999884 8999999999999988755444433222 11222212211111 111 Q ss_pred CCC Q lcl|Aclame:pro 454 GSR 456 (456) Q Consensus 454 Gs~ 456 (456) ++. T Consensus 502 ~~~ 504 (511) T protein:vir:99 502 STK 504 (511) T ss_pred CCc Confidence 111 No 36 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=100.00 E-value=4e-80 Score=455.89 Aligned_cols=433 Identities=16% Similarity=0.113 Sum_probs=326.3 Q ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhhccC-cccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDD-GMSRVRLLARYSNGDA-PLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~-~~~~~~~~~~YY~g~~-~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) .+... -++++.++.+|.. +.+||+++.+||+|+| ++...+.. ....+.++|+++||+++||++.++||+|+|+++ T Consensus 37 ~~~~~-~~~i~~~i~~h~~~~~~rl~~l~~yY~g~~~~i~~~~~~--~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~ 113 (502) T protein:vir:48 37 LMVNN-WELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSGRR--KDNEMADKRAVHNYGRMISKFKTGYLAGNPIRV 113 (502) T ss_pred hcccc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc--cccccccceeecchHHHHHHHHhhhhcccCeeE Confidence 22222 2467788887764 5789999999999985 45433322 333466778999999999999999999999998 Q ss_pred CCCccc--c-HHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEE Q lcl|Aclame:pro 79 GGSADS--D-LALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMR 155 (456) Q Consensus 79 ~~~~d~--~-~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) +..+++ + ....++++|+.|+|+.++.+++++++++|+||+++|.+++|++++++++|++++++||+....++.+++| T Consensus 114 ~~~d~~~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~ir 193 (502) T protein:vir:48 114 EYDDNEDNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNSLEDNSIAAVR 193 (502) T ss_pred ecCCccchhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEE Confidence 764432 2 3456889999999999999999999999999999999999999999999999999999888888999999 Q ss_pred EEEec--CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHH Q lcl|Aclame:pro 156 WWRDL--DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHID 232 (456) Q Consensus 156 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~ 232 (456) +|... ++...++.+|+++.++++... +.+......+|.++.|||++| +|++|+|+|+++++ T Consensus 194 ~~~~~~~~~~~~~~~iyt~~~i~~~~~~----------------~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~ 257 (502) T protein:vir:48 194 YYNRGTLQNAKDVVEIYTNQHIYTLDAS----------------DSFNEISVTPHAFGTVPITEFLNNADGIGDYETELY 257 (502) T ss_pred EEEEeecCCcEEEEEEEeCCeEEEEEeC----------------CceeeccceecCCCccceEEecCCCCCCCchhhhHH Confidence 98643 345677889999999988632 223344566788998888876 57789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhh-ccceeecCCCcceeec-cccchHHHHH Q lcl|Aclame:pro 233 IINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAA-PGALWELPPGVDIWES-QANDFTPMLS 310 (456) Q Consensus 233 liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 310 (456) |||+||+++|++++.+++|++|+++++|..... .++.+..+.....+... ++......+++++..+ .+.+.+.+.. T Consensus 258 liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 335 (502) T protein:vir:48 258 LIDLYDSAESDTANHMSDMADAILAIYGDLALP--QGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEA 335 (502) T ss_pred HHHHHHHHHHHHHHHHHHhcCceeeeecCcccc--cccchhhhhhcceeeccccccccccccCcceeEeeecCCHHHHHH Confidence 999999999999999999999999999965432 12233322222211111 1111112233333222 2345567778 Q ss_pred HHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------Cccccce Q lcl|Aclame:pro 311 AIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE------SVEDTVD 384 (456) Q Consensus 311 ~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~------~~~~~i~ 384 (456) +++.+.++|+..+++|+..++++++|+||+||++++++|.+||..+++.|+.+|++++++++++.+. .+..+++ T Consensus 336 ~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~ 415 (502) T protein:vir:48 336 YKTRLNKDIHVFTNTPDMSDNHFSGNASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLK 415 (502) T ss_pred HHHHHHHHHHHHhCCCCcCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccce Confidence 8899999999999999999988889999999999999999999999999999999999999887542 2344689 Q ss_pred EEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHH---HHHHHHHHHhhccc-----------ccc Q lcl|Aclame:pro 385 VSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLD---RAREQITLFAGNPV-----------QRP 450 (456) Q Consensus 385 v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~---~~~e~~~~~~~~~~-----------~~~ 450 (456) ++|+++.|+|.++.|++++|| +|++|++|+++++|+++|..+|+++. +.+........... +++ T Consensus 416 i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~ 493 (502) T protein:vir:48 416 ITFTPNLPKSLYEQVSILNDL--GGQVSQETALSLSGLVENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKETH 493 (502) T ss_pred EEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcccccccccccccCCCccCCC Confidence 999999999999999999988 58999999999999988755544433 22211111111100 011 Q ss_pred cCCCCC Q lcl|Aclame:pro 451 QEDGSR 456 (456) Q Consensus 451 ~~~Gs~ 456 (456) .+++.. T Consensus 494 ~~~~~~ 499 (502) T protein:vir:48 494 TDDFER 499 (502) T ss_pred CcCcCC Confidence 111111 No 37 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=100.00 E-value=2.1e-80 Score=457.44 Aligned_cols=423 Identities=15% Similarity=0.083 Sum_probs=331.2 Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCc--cccHHHH Q lcl|Aclame:pro 12 VLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA--DSDLALR 89 (456) Q Consensus 12 ~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~--d~~~~~~ 89 (456) .|..++..+++||+++++||+|+|+++..+...... .+.++|+++||+++|||+.++||+|+|+++...+ +++.... T Consensus 1 ~~~~~~~~~~~r~~~l~~yy~g~~~~~~~~~~~~~~-~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~~~~~~~~ 79 (440) T protein:vir:95 1 MLAAFLGSQKQRLAILASYAQGDNFSILSGHRRLDD-EKADYRVRHKWGGYISSFATGYVIGNPVSIGVMEGGSADQLST 79 (440) T ss_pred ChhhHHHHHHHHHHHHHHHhccCCcccccccccccc-cCCcceeecchHHHHHHhhhhheeccCceEeeCCCccHHHHHH Confidence 677788889999999999999999987555443333 3456789999999999999999999999886433 4455667 Q ss_pred HHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEE Q lcl|Aclame:pro 90 ARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIV 169 (456) Q Consensus 90 l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~ 169 (456) ++++|++|+|+.++.+++++++++|+||+++|++++|+++++.++|++++++||+...+++.+++++|...+ ..++++ T Consensus 80 l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~--~~~~~v 157 (440) T protein:vir:95 80 IKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDRVVLISPLEMFVIRDLTVEQNIIAAVHLPIYAD--KVNMTV 157 (440) T ss_pred HHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEecC--ceEEEE Confidence 899999999999999999999999999999999999999999999999999999988888999999987654 456789 Q ss_pred EeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 170 WSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDIINRINRAELQLLSTM 248 (456) Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~liD~~~~~~s~~~~~~ 248 (456) |+++.+++|..... ..+.+......+|.++.|||++|. |++|+|+|+++++|||+||+++|++++.+ T Consensus 158 yt~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~lida~~~~~s~~~~~~ 225 (440) T protein:vir:95 158 YTKDKVITYKPYSN------------NSVRLVVDDVKKHSYNDVPVVEWWNNRFRMGDYESEISLIDAYDAGQSDTANYM 225 (440) T ss_pred EeCCeEEEEEEecC------------CccceeecceeeccCceeeEEEeeCCCCCCCchhhhHHHHHHHHHHHHHHHHHH Confidence 99999998864322 123444556678999999999875 57799999999999999999999999999 Q ss_pred HHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhcc-cee--ecCCCcceeeccccchHHHHHHHHHHHHHHHhhcCC Q lcl|Aclame:pro 249 AIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPG-ALW--ELPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKT 325 (456) Q Consensus 249 ~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~ 325 (456) ++|++|+++++|...+....++.+..+..........+ ... ..++++++...+ .+.+.+.+.++.+..+|+.++++ T Consensus 226 ~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-~~~~~~~~~~~~l~~~i~~~s~~ 304 (440) T protein:vir:95 226 SDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLKTGISTTGQQTTADASYIYKQ-YDVNGTEAYKNRLANDIHRFSRI 304 (440) T ss_pred HHhhcceeeeecccccCCCCccchhhhhhccceecccccccccCCCCcceeEEeec-CCHHHHHHHHHHHHHHHHHHhCC Confidence 99999999999976555444444443322211111110 011 112334444333 45678888999999999999999 Q ss_pred ChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCccccceEEecCCCCCCHHHHHH Q lcl|Aclame:pro 326 PLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG-----ESVEDTVDVSFESPDRVTLGEKYS 400 (456) Q Consensus 326 p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g-----~~~~~~i~v~f~~~~~~~~~e~ad 400 (456) |+..++++++|+||+||++++++|.+||+++++.|+++|++++++++++.+ ..+..+++++|+++.|+|.++.|| T Consensus 305 p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~~p~~~~~~ad 384 (440) T protein:vir:95 305 PNLDDDRFNSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGPVIEANKLTFTFHPNIPQDVWTEIK 384 (440) T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEeCCCCCCCHHHHHH Confidence 999998888999999999999999999999999999999999999887643 234567899999999999999999 Q ss_pred HHHHHHhcCCCcHHHHHHhCCCCcc--HHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 401 AASLAKAAGESWASIRRNILNYNAD--QIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 401 ~~~kl~~~g~~s~~t~~~~~~~~~~--~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +++|| +|++|.+|+++++|++++ +.+++.+|+.++.... ... .+..+|.. T Consensus 385 ~~~kl--~g~iS~et~~~~l~~~d~~~E~~ri~~E~~~~~~~~--~~~--~~~~~~~~ 436 (440) T protein:vir:95 385 AYIEA--GGEISQETLMENASFTDYKTEHSRILKQGGSSDLEI--GQI--VGDADVGQ 436 (440) T ss_pred HHHHH--hccCcHHHHHHhCCCCCcHHHHHHHHHHHHHhhhhH--Hhh--ccCCCCCC Confidence 99998 589999999999999854 3333333333222211 111 12222222 No 38 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=100.00 E-value=3.2e-80 Score=456.43 Aligned_cols=435 Identities=17% Similarity=0.099 Sum_probs=326.5 Q ss_pred CC-----CCCHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MT-----ASTPAEWLPVLTKRIDD-GMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~-----~~t~~~~~~~l~~~~~~-~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) +. .....++++.++.+|.. +.+||+++.+||+|+|..+...... ....+.++|+++||+++||++.++|++|+ T Consensus 30 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~~i~~~~~~-~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~ 108 (501) T protein:vir:96 30 ADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSGRR-KDNEMADKRAVHNYGRMISKFKTGYLAGN 108 (501) T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcccc-CccccccceeecchHHHHHHHHhhhhccc Confidence 11 12334568888888765 4679999999999986433222222 23345677899999999999999999999 Q ss_pred CcccCCCcc---ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeE Q lcl|Aclame:pro 75 GITVGGSAD---SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIR 151 (456) Q Consensus 75 ~~~~~~~~d---~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~ 151 (456) |+++...++ +.....++++|+.|+|+.++.+++++++++|+||+++|++++|.+++++++|++++|+||+...+++. T Consensus 109 p~~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~v~d~~~~~~~~ 188 (501) T protein:vir:96 109 PIRVEYDDNDDNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNSLEDNSI 188 (501) T ss_pred CeeEeeCCccchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEccceeEEEEcCCCCCceE Confidence 999875432 22455688999999999999999999999999999999999999999999999999999998888999 Q ss_pred EEEEEEEec--CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHH Q lcl|Aclame:pro 152 AAMRWWRDL--DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVE 228 (456) Q Consensus 152 ~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~ 228 (456) +++++|... ++...++++|+++.+++|.... .+......+|.++.|||++| +|++|+|+|+ T Consensus 189 ~~v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~----------------~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e 252 (501) T protein:vir:96 189 AAVRYYNRGTLQSAKDVVEIYTDEHIYTLDASD----------------DFNEISVTTHAFGTVPITEYLNNIDGIGDYE 252 (501) T ss_pred EEEEEEEeecCCCcEEEEEEEcCCcEEEEeeCC----------------CceeccccccCCCccceEEecCCccCCCchh Confidence 999998753 3556788999999999886432 22334557789999999987 5678999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhh-hccceeecCCCcceeec-cccchH Q lcl|Aclame:pro 229 PHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA-APGALWELPPGVDIWES-QANDFT 306 (456) Q Consensus 229 ~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 306 (456) ++++|||+||+++|++++.++++++|+++++|...... ++.+........+.. ..+.......++++..+ .+.+.+ T Consensus 253 ~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 330 (501) T protein:vir:96 253 TELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPK--GMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVS 330 (501) T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCc--ccchhhhhhcCeeeecccccccccccCcceeeEeccCCHH Confidence 99999999999999999999999999999999754332 122222111111111 11111122233333222 234456 Q ss_pred HHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------Ccc Q lcl|Aclame:pro 307 PMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE------SVE 380 (456) Q Consensus 307 ~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~------~~~ 380 (456) .+..+++.+.++|+..+++|+..++++++|+||+||++++++|.+||..+++.|+.+|++++++++++.+. .+. T Consensus 331 ~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~ 410 (501) T protein:vir:96 331 GAEAYKTRLNRDIHIFTNTPDMSDTNFSGNTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDE 410 (501) T ss_pred HHHHHHHHHHHHHHHHhCCcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc Confidence 67777888888999999999999988889999999999999999999999999999999999999876532 234 Q ss_pred ccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHH-HHHHH--HHhhc----ccccccCC Q lcl|Aclame:pro 381 DTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRA-REQIT--LFAGN----PVQRPQED 453 (456) Q Consensus 381 ~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~-~e~~~--~~~~~----~~~~~~~~ 453 (456) .+++++|+++.|+|.++.|++++||. |++|.+|+++++|+++|..+++++.+. +++.. ...+. .+..+++. T Consensus 411 ~~i~i~f~~~~p~n~~e~ad~~~kl~--g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 488 (501) T protein:vir:96 411 SLLKITFTPNLPKSLNEQVSILTGLG--GQVSQETALSLSGLVESPNEELDKINKEMSEIDFKGYSNDFNEHVGKYTDEV 488 (501) T ss_pred ccceEEeCCCCCcCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHhhccccccchhhcccccCCcC Confidence 56899999999999999999999984 899999999999999876555543322 22211 11111 11111111 Q ss_pred CCC Q lcl|Aclame:pro 454 GSR 456 (456) Q Consensus 454 Gs~ 456 (456) +.+ T Consensus 489 ~e~ 491 (501) T protein:vir:96 489 KET 491 (501) T ss_pred CCC Confidence 111 No 39 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=100.00 E-value=7e-80 Score=454.54 Aligned_cols=434 Identities=16% Similarity=0.109 Sum_probs=325.7 Q ss_pred CCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRID-DGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~-~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) .+..+. ++++.++.+|. .+.+||+++.+||+|+|+.+...... ....+.++|+++||+++||++.++|++|+|++++ T Consensus 36 ~~~~~~-~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~~~~~~-~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~ 113 (501) T protein:vir:27 36 LMVNNW-ELLKNFINHHKLRQAPRIQELLDYARGENHDVLQFGRR-KDREMADKRAVHNYGRMISKFKTGYLAGNPIRVE 113 (501) T ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCcc-CccccccceeccchHHHHHHHHhhhhcccCeeEe Confidence 233333 35777777775 55789999999999996543222222 2224567789999999999999999999999987 Q ss_pred CCcc---ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 80 GSAD---SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 80 ~~~d---~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) ..++ +.....++++|+.|+|+.++.+++++++++|+||+++|++++|++++++++|++++++||+...+++.+++++ T Consensus 114 ~~d~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~ 193 (501) T protein:vir:27 114 YDDNDNNSQNDDTIKRIGRINDIDSHNRTLIRDLSQTGRAYEVIYRNEYDETRIKRLNPLETFVIYDNSLEDNSIAAVRY 193 (501) T ss_pred cCCccchHHHHHHHHHHHHhcChhHHHHHHHHHHhhCCeEEEEEEeCCCCceEEEEEccceeEEEecCCCCCceEEEEEE Confidence 5433 2234568889999999999999999999999999999999999999999999999999999888899999999 Q ss_pred EEec--CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHHH Q lcl|Aclame:pro 157 WRDL--DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDI 233 (456) Q Consensus 157 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~l 233 (456) |... ++...++.+|+++.+++|... +.+......+|.++.|||++| +|++|+|+|+++++| T Consensus 194 ~~~~~~~~~~~~~~vyt~~~v~~~~~~----------------~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~l 257 (501) T protein:vir:27 194 YNRGTLQNAKDVVEIYTNEHIYTLDAS----------------DDFNEISVTTHAFGTVPITEFLNNVDGIGDYETELYL 257 (501) T ss_pred EEeeecCCcEEEEEEEeCCeEEEEEeC----------------CceeeccccccCCCcccEEEecCCCCCCCchhhhHHH Confidence 8753 455778899999999988643 223344567789999999887 567899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhh-hccceeecCCCcceeec-cccchHHHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA-APGALWELPPGVDIWES-QANDFTPMLSA 311 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 311 (456) ||+||+++|++++.++++++|+++++|...... ++.+........+.. ..+.....+.++++..+ .+.+.+.+..+ T Consensus 258 iDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 335 (501) T protein:vir:27 258 IDLYDSAESDTANHMSDMADAILAIYGDLALPK--GMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAY 335 (501) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeeecCccCCc--ccchhhhhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHH Confidence 999999999999999999999999999654321 122222111111111 11111222233343322 23455667777 Q ss_pred HHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CccccceE Q lcl|Aclame:pro 312 IKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE------SVEDTVDV 385 (456) Q Consensus 312 ~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~------~~~~~i~v 385 (456) ++.+.++|++++++|+..++++++|+||+||++++.+|.+||..+++.|+++|++++++++++.+. .+..++++ T Consensus 336 ~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v 415 (501) T protein:vir:27 336 KTRLNRDIHIFTNIPDMSDTNFSGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKI 415 (501) T ss_pred HHHHHHHHHHHhCCcccCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceE Confidence 888888999999999988888889999999999999999999999999999999999999886532 23456899 Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHH---HHHHHHHHHHHhhccccc--ccCCCCC Q lcl|Aclame:pro 386 SFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDD---LDRAREQITLFAGNPVQR--PQEDGSR 456 (456) Q Consensus 386 ~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e---~~~~~e~~~~~~~~~~~~--~~~~Gs~ 456 (456) +|+++.|.|.++.|++++|| +|++|.+|+++++|++++..++++ +|+++.......+..... ...+.++ T Consensus 416 ~f~~~~p~n~~e~ad~~~kl--~g~iS~et~l~~l~~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~ 489 (501) T protein:vir:27 416 TFTPNLPKSLNEQVSILTGL--GGQVSQETALSLSGLVESPNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVK 489 (501) T ss_pred EeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhHhhhcCccccccccccCCCC Confidence 99999999999999999987 589999999999999876555444 333221222222211111 1111111 No 40 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=100.00 E-value=1.2e-79 Score=453.25 Aligned_cols=440 Identities=14% Similarity=0.048 Sum_probs=331.5 Q ss_pred CCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKR-IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~-~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) -+.+++++ |..++.+ ...+++||+++++||+|+|+++......+... +.++|+++||+++||++.++|++|+|+++. T Consensus 37 ~~~~~~~~-i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~-~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:96 37 DLLQNVNE-VSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEY-MADNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred hhhccHHH-HHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcCcccc-cCcceeecchHHHHHHHHHhhhccCCceee Confidence 23344554 4455554 46678899999999999999987765555444 345689999999999999999999999997 Q ss_pred CCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEe Q lcl|Aclame:pro 80 GSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRD 159 (456) Q Consensus 80 ~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 159 (456) .+ +++..+.++++|+.|+|+.++.+++++++++|+||+++|.+++|++++++++|++++|+||+....++.+++|+|.. T Consensus 115 ~~-~~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~ 193 (511) T protein:vir:96 115 DD-DKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRT 193 (511) T ss_pred cC-chHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEe Confidence 54 44567889999999999999999999999999999999999999999999999999999999888889999999875 Q ss_pred cC------CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHH Q lcl|Aclame:pro 160 LD------AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHID 232 (456) Q Consensus 160 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~ 232 (456) .. ....++.+|+++.+++|......+... .+......+|+++.+||++|. |++|+|+|+++++ T Consensus 194 ~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~ 263 (511) T protein:vir:96 194 KPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKL----------TPRENGFESHSFERMPITEFSNNERRKGDYEKVIT 263 (511) T ss_pred eeccccccceEEEEEEEeCCcEEEEEecCCCcccc----------cccccccccccCCceeeEEecCCCCCCCchhhhHH Confidence 32 234567899999999987654332221 122334567889999998885 5789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccc---cccccchhhhhhhhhhhhhccceeecCCCcceeecc-ccchHHH Q lcl|Aclame:pro 233 IINRINRAELQLLSTMAIQAFRQRALKSTEHGL---PNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQ-ANDFTPM 308 (456) Q Consensus 233 liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~---~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 308 (456) |||+||.++|++++.++++++|+++++|..... ...+..+..+......... +......+++++..+. +.+.+.+ T Consensus 264 liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 342 (511) T protein:vir:96 264 LIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYAD-SEGRETEGSVDGGYIYKQYDVQGT 342 (511) T ss_pred HHHHHHHHHHHHHHHHHHhhCceeeeecCccCCchhhcccccccceecccccccc-cccccCCCCcceeEEeecCCHHHH Confidence 999999999999999999999999999954321 1111111111111111111 1111222334443322 4456778 Q ss_pred HHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------Cccc Q lcl|Aclame:pro 309 LSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-------SVED 381 (456) Q Consensus 309 ~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-------~~~~ 381 (456) +++++.+.+.|+..+++|+..++++++|+||+||+++++++.++|..+++.|+++|++++++++++.+. .+.. T Consensus 343 e~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~ 422 (511) T protein:vir:96 343 EAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFN 422 (511) T ss_pred HHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccc Confidence 888899999999999999999988889999999999999999999999999999999999998876431 2334 Q ss_pred cceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH--HHHHHHhhccc--ccccCCCCC Q lcl|Aclame:pro 382 TVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR--EQITLFAGNPV--QRPQEDGSR 456 (456) Q Consensus 382 ~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~--e~~~~~~~~~~--~~~~~~Gs~ 456 (456) +++++|+++.|.|.++.++++++| +|++|++|+++++|++++..+++++.+++ +++........ +.+..+|.. T Consensus 423 ~i~~~f~~~~p~n~~e~~~~~~kl--~G~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 499 (511) T protein:vir:96 423 TVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQ 499 (511) T ss_pred cceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCC Confidence 789999999999999999999987 58999999999999988755544433222 22222222222 122222222 No 41 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=100.00 E-value=1.4e-79 Score=452.92 Aligned_cols=428 Identities=9% Similarity=0.010 Sum_probs=333.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccch----hhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~----~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) +|++. |++|+.+|..+++|++++++||+|+|+|+..+..... ...+.++|+++||+++||++.++|++|+|+++. T Consensus 1 l~~~~-i~~~i~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~ 79 (451) T protein:vir:10 1 MELEK-IRAIISADAARRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYPVLFD 79 (451) T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheecccceee Confidence 88885 5668888889999999999999999999876543322 234567789999999999999999999999987 Q ss_pred CCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCC--------CceEEEEEccceEEEEeeCCCCceeE Q lcl|Aclame:pro 80 GSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDD--------GTATITADSPETMVVSVDPLQPWRIR 151 (456) Q Consensus 80 ~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~--------g~~~i~~~~p~~~~~i~d~~~~~~~~ 151 (456) ..+++ ....+++.|..|+++.++.+++++++++|+||+++|.+++ |.+++++++|++++|+||+....++. T Consensus 80 ~~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~vydd~~~~~~~ 158 (451) T protein:vir:10 80 IDNNK-ELNEKVTDVLGNEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPIYRNGIERELE 158 (451) T ss_pred cCCcH-HHHHHHHHHhccCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEEEcCCCCCceE Confidence 54444 3445566676799999999999999999999999999986 78899999999999999988888999 Q ss_pred EEEEEEEecCCc--------eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCC Q lcl|Aclame:pro 152 AAMRWWRDLDAE--------SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPD 222 (456) Q Consensus 152 ~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~ 222 (456) +++|+|...+.. ..++.+||++.+++|...... ..+........+|++++|||++|. |++ T Consensus 159 ~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~vPvv~~~nn~~ 227 (451) T protein:vir:10 159 AVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVS-----------CCGSQIEHITVQHRFNSVPFVEFSNNIK 227 (451) T ss_pred EEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccC-----------ccccccccccccCCCCeeeEEEeccCCC Confidence 999998754321 346778999999887643221 112334456678999999999884 677 Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccc Q lcl|Aclame:pro 223 GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQA 302 (456) Q Consensus 223 ~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (456) +.|+|+++++|||+||.++|++++.+++|++|+++++|...... .+....+.....+... ......++++++.+. + T Consensus 228 ~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~i~~~-~~~~~~~~~~~~l~~-~ 303 (451) T protein:vir:10 228 KQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDT--SEFLKELKRYKTIKTE-TDSEGDSGGLKTMQI-E 303 (451) T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccc--hhhHHHHhhCCeEEec-CcCCccCCcceEEee-c Confidence 99999999999999999999999999999999999999654321 1111111111101000 000011234444433 3 Q ss_pred cchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 303 NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDT 382 (456) Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~ 382 (456) .+.+.+.+.++.+.++|+..|++|+..+.++ +|+||+||++++.+|.+||+.+++.|+++|++++++++++.|..+..+ T Consensus 304 ~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-gn~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~d~~~ 382 (451) T protein:vir:10 304 IPTEARKIILEILKKQIYESGQGLQQDTENF-GNASGVALKFFYRKLELKSGLLETEFRTSFDKLIKAILYFLGVTDYKK 382 (451) T ss_pred CCHHHHHHHHHHHHHHHHHHhCccccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc Confidence 4667888889999999999999998777665 799999999999999999999999999999999999999999888889 Q ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHH--HHHHHHHHHhhccccccc Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLD--RAREQITLFAGNPVQRPQ 451 (456) Q Consensus 383 i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~--~~~e~~~~~~~~~~~~~~ 451 (456) ++++|+++.|.|+++.++++++++ |++|++|+++++|++++..+++++. +++++.....+..+.-++ T Consensus 383 i~i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~~~~p~v~d~~~e~~~~~ee~~~~~~~~~~~~~~~~~ 451 (451) T protein:vir:10 383 IQQTYTRNMMSNDLEDADIATKSV--GIIPTKIILRHHPWVDDVEEAEKLYLEEKKIQASKVSDDYNNFTE 451 (451) T ss_pred eeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCC Confidence 999999999999999999999984 8999999999999998755554432 233334444444444333 No 42 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=100.00 E-value=1.9e-79 Score=452.13 Aligned_cols=418 Identities=12% Similarity=0.071 Sum_probs=332.4 Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcc Q lcl|Aclame:pro 1 MT---ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGIT 77 (456) Q Consensus 1 ~~---~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~ 77 (456) ++ ++|++ .|..++.+|..+++||+++++||+|+|+|+..+.+.+ .+.++|+++||+++||++.++|++|+|++ T Consensus 11 ~~~~~~~~~~-~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~---~~~~~ki~~n~~~~ivd~~~~~l~g~~~~ 86 (452) T protein:vir:36 11 FSKDEPITVE-VVTKFMEKHKLEVARYEYLKNMYLGIMAIDDEPAKDS---WKPDNRLAVNFTKYIVDTFTGYFNGIPVK 86 (452) T ss_pred cCCccCCCHH-HHHHHHHHHHHHHHHHHHHHHHhccccccccCccccc---cCccceeecchHHHHHHHHhhhhcccCce Confidence 33 44444 6777999999999999999999999999876554322 35577899999999999999999999999 Q ss_pred cCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEE Q lcl|Aclame:pro 78 VGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWW 157 (456) Q Consensus 78 ~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 157 (456) ++.. +++..+.++++|+.|+|+.++.+++++++++|+||+++|++++|.+++++++|++++++||+...+++.+++++| T Consensus 87 ~~~~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~ 165 (452) T protein:vir:36 87 KSHS-DKEILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDEDTQTNVVYNSPENMFMVYDDTVKQEPLFAVRYG 165 (452) T ss_pred eecC-ChhHHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEEcCCCCCceEEEEEEE Confidence 8754 455677899999999999999999999999999999999999999999999999999999998888899999998 Q ss_pred EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHHHHH Q lcl|Aclame:pro 158 RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDIINR 236 (456) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~liD~ 236 (456) .+.+ ...++++|+++.+++|.... +.+......+|+++.|||+++. |++|.|+|+++++|+|+ T Consensus 166 ~~~~-~~~~~~vyt~~~i~~~~~~~---------------~~~~~~~~~~~~~g~iPvv~~~n~~~g~sd~e~v~~liDa 229 (452) T protein:vir:36 166 VDED-KKLQGEVYTLLETIKISGEN---------------DEISFGEGTYNPYPDLPVVEFYFNEERMSIFESVISLVNA 229 (452) T ss_pred EecC-ceEEEEEEecCeEEEEEEcC---------------CceEEecceeccCCcccEEEecCCCCCCcchHHHHHHHHH Confidence 7655 35678999999999886432 2334445667899999998875 57899999999999999 Q ss_pred HHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecC-------CCcceeeccccchHHHH Q lcl|Aclame:pro 237 INRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELP-------PGVDIWESQANDFTPML 309 (456) Q Consensus 237 ~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 309 (456) ||+++|++++.++++++|+++++|...... ..... ..+.++..+ +++++... +.+.+.+. T Consensus 230 ~d~~~s~~~~~~~~~~~p~~~~~g~~~~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 296 (452) T protein:vir:36 230 FNKAISEKANDVDYFSDQYLTFLGAAVEEE----DLKNI--------RSNRVINYYADGEGKNVDVKFLEK-PDSDSQTE 296 (452) T ss_pred HHHHHHHHHHHHHHhcCceeEeecCCcCch----hhhhh--------hhcceEEecCCCCccCCcceeEee-cCCHHHHH Confidence 999999999999999999999999754321 11111 112222222 23444333 34567788 Q ss_pred HHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CccccceE Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE----SVEDTVDV 385 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~----~~~~~i~v 385 (456) .+++.+.++|+..+++|...++.+ +|+||+||++++++|.+||..+++.|+.+|++++++++++.+. .+..+++| T Consensus 297 ~~~~~l~~~I~~~s~~p~~~~~~~-gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~i 375 (452) T protein:vir:36 297 NLLDRLTKLIFQTTMVANISDESF-GSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVSNKDSWKDIEY 375 (452) T ss_pred HHHHHHHHHHHHHhCccccCcccc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceE Confidence 888999999999999998877765 6899999999999999999999999999999999999887643 23457899 Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 386 SFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 386 ~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .|+++.|.|.++.|++++|+ +|++|.+|+++++|++++..+++++.+++++..... .....+.++|+. T Consensus 376 ~f~~~~p~d~~~~a~~~~k~--~g~iS~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~-~~~~~~~~~~~~ 443 (452) T protein:vir:36 376 TFTRNEPKDIKEQAETANIL--MGITSQETALSVISVIPDVQAEMEKIKKEEASTAIF-DKDKQPSEKGTD 443 (452) T ss_pred EeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH-HhhccCCCCccc Confidence 99999999999999999987 589999999999999987555555433332221111 112223333333 No 43 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=100.00 E-value=2.8e-79 Score=451.20 Aligned_cols=432 Identities=11% Similarity=0.024 Sum_probs=332.1 Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccc----hhhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MT--ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTS----AAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~--~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~----~~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) |. .+...++|..++.+|..+++|++++++||+|+|+|+..+.... ....+.++|+++||+++|||+.++|++|+ T Consensus 18 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~ 97 (472) T protein:vir:93 18 TNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGK 97 (472) T ss_pred ecCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhccccccccccccccccchHHHHHHHHhhhhccc Confidence 33 2344678999999999999999999999999999876543321 22235677899999999999999999999 Q ss_pred CcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 75 GITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 75 ~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) |+++..+ +++..+.++++| .|+++..+.+++++++++|+||+++|.+++|++++++++|++++++||+....++.+++ T Consensus 98 ~~~~~~~-d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~i~~~~p~~~~~i~d~~~~~~~~~~i 175 (472) T protein:vir:93 98 PIAFKHT-DDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFI 175 (472) T ss_pred CeeeccC-ChHHHHHHHHHH-hccHHHHHHHHHHHHhhcCeEEEEEEECCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 9998653 445556666666 58999999999999999999999999999999999999999999999988888899999 Q ss_pred EEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHH Q lcl|Aclame:pro 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDI 233 (456) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~l 233 (456) |+|...+. ..+++|+++.++.|............ ....+......+|.++.|||++|. |++|+|+|+++++| T Consensus 176 r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~s~~e~v~~l 248 (472) T protein:vir:93 176 RMYKLENE--TKVEYWDKVTVNYYVYENGSLIPDYS-----NNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTL 248 (472) T ss_pred EEEEeecc--eeEEEEecCeEEEEEEecCeeeeccc-----ccccccccccccCCCCCcceEEecCCCCCCCchhhhHHH Confidence 99986543 35789999998887644322211111 111223345567889999998885 67899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCc--ceeeccccchHHHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGV--DIWESQANDFTPMLSA 311 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 311 (456) +|+||+++|++++.++++++|+++++|...... ++.... .....++..+.++ ++... +.+.+.+... T Consensus 249 iDa~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 317 (472) T protein:vir:93 249 IDAYNRRLSDLSNTFKDSNELTYVLTNYDDQEL--PEFKRL--------LRYYGAIKVSDNGGVDTIQV-EVPVENSKKY 317 (472) T ss_pred HHHHHHHHHHHHHHHHHhcCceeEeecCCcccc--hhhHHH--------HhhccccccCCCCcceeEee-cCCHHHHHHH Confidence 999999999999999999999999999754321 111111 1122333344444 44332 3455777788 Q ss_pred HHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccceEEecCC Q lcl|Aclame:pro 312 IKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-EDTVDVSFESP 390 (456) Q Consensus 312 ~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-~~~i~v~f~~~ 390 (456) ++.+..+|+..+++|...++.+++|+||+||++++.+|..||+.+++.|+.+|++++++++++.|... ..+++|+|+++ T Consensus 318 ~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~ 397 (472) T protein:vir:93 318 LDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYN 397 (472) T ss_pred HHHHHHHHHHHhCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeCCC Confidence 88888899999999998888888899999999999999999999999999999999999999988644 46799999999 Q ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHH--HHHHHhhcccccccCCCCC Q lcl|Aclame:pro 391 DRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRARE--QITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 391 ~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e--~~~~~~~~~~~~~~~~Gs~ 456 (456) .|+|.++.+++++|+ +|++|++|+++++|++++..+++++.++++ +...+.. ......++++ T Consensus 398 ~p~~~~~~~~~~~k~--~giis~et~l~~l~~~~d~~~E~~ri~~E~~~~~~~~~~--~~~~~~d~~~ 461 (472) T protein:vir:93 398 KVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPN--LDDGGADGAQ 461 (472) T ss_pred CCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccC--cCcccCCCCC Confidence 999999999999987 589999999999999887555554432221 2222211 1112222222 No 44 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=100.00 E-value=7.1e-79 Score=449.03 Aligned_cols=434 Identities=9% Similarity=0.027 Sum_probs=334.1 Q ss_pred CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcc----cchhhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MTAS--TPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRN----TSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~~~--t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~----~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) |.+. +..++|+.|+.+|..+.+||+++.+||+|+|+|+...+. .....++.++|+++||+++||++.++|++|+ T Consensus 21 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~ 100 (474) T protein:vir:94 21 LKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWRITTNFHQNLVDQKVSYVASK 100 (474) T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcceeecchHHHHHHHHHhhhhcC Confidence 2211 233689999999999999999999999999998755432 2234456678899999999999999999999 Q ss_pred CcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 75 GITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 75 ~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) |++++.+ +++....++. |.+|+++..+.++++.++++|+||+++|.+++|.+++++++|++++|+||+....++.+++ T Consensus 101 p~~~~~~-d~~~~~~l~~-~~~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~i 178 (474) T protein:vir:94 101 PVTYSCE-DENVLKVIHD-VLDTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAEQAIPIWVDKEREELKSFI 178 (474) T ss_pred CceeccC-cHHHHHHHHH-HHhccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEEEcccceEEEEcCCCCCceEEEE Confidence 9998653 3344444544 5568999999999999999999999999999999999999999999999998888999999 Q ss_pred EEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHH Q lcl|Aclame:pro 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDI 233 (456) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~l 233 (456) |+|...+ ..++.+|+++.+++|.......... ......+......+|.+++|||++|. |++|+|+|+++++| T Consensus 179 r~~~~~~--~~~~~~yt~~~~~~y~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~l 251 (474) T protein:vir:94 179 RYYKFNN--EEKVEFWTDTTVTYYVLENGGLIPD-----YYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSI 251 (474) T ss_pred EEEEecC--eEEEEEEeCCeEEEEEEcCCccccc-----cccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHH Confidence 9997654 4578899999999887654332221 11222334455678999999999884 57899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSAI 312 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 312 (456) ||+||+++|++++.++++++|+++++|...... .+... ....+.++.+++++++..+ .+.+.+.+.+.+ T Consensus 252 iDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~--~~~~~--------~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~ 321 (474) T protein:vir:94 252 IDAIDKRLSDAQNMFDESVELIYILKGYEGEDL--EEFMR--------GLKYYKAINVDGDGGVETIQVEVPVSSTKEYI 321 (474) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeeecCCcccc--hhhhh--------hhhccceeeccCCCceeEEeecCCHHHHHHHH Confidence 999999999999999999999999999754321 11111 1123344444544443322 235667888888 Q ss_pred HHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecCCC Q lcl|Aclame:pro 313 KEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESPD 391 (456) Q Consensus 313 ~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~~~ 391 (456) +.+...|+..+++|...++++++|+||+||++++.++.+||+.+++.|+++|++++++++++.|.. +..+++++|+++. T Consensus 322 ~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~ 401 (474) T protein:vir:94 322 DLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNR 401 (474) T ss_pred HHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCc Confidence 999999999999999888888889999999999999999999999999999999999999988854 4467999999999 Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH--HHHH---hhc---ccccccCCCCC Q lcl|Aclame:pro 392 RVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ--ITLF---AGN---PVQRPQEDGSR 456 (456) Q Consensus 392 ~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~--~~~~---~~~---~~~~~~~~Gs~ 456 (456) |.|+++.|+++++ +|++|++|+++++|+++|..+++++.+.+.+ ...+ ... ..+...+.+++ T Consensus 402 p~~~~e~a~~~~~---~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (474) T protein:vir:94 402 MMNDAEQSQIIAQ---SQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNK 471 (474) T ss_pred ccCHHHHHHHHHH---cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCccc Confidence 9999999998865 4899999999999999875555544322221 1111 111 11111122222 No 45 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=100.00 E-value=7.1e-79 Score=449.03 Aligned_cols=434 Identities=9% Similarity=0.027 Sum_probs=334.1 Q ss_pred CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcc----cchhhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MTAS--TPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRN----TSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~~~--t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~----~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) |.+. +..++|+.|+.+|..+.+||+++.+||+|+|+|+...+. .....++.++|+++||+++||++.++|++|+ T Consensus 21 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~ 100 (474) T protein:vir:97 21 LKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWRITTNFHQNLVDQKVSYVASK 100 (474) T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcceeecchHHHHHHHHHhhhhcC Confidence 2211 233689999999999999999999999999998755432 2234456678899999999999999999999 Q ss_pred CcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 75 GITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 75 ~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) |++++.+ +++....++. |.+|+++..+.++++.++++|+||+++|.+++|.+++++++|++++|+||+....++.+++ T Consensus 101 p~~~~~~-d~~~~~~l~~-~~~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~i 178 (474) T protein:vir:97 101 PVTYSCE-DENVLKVIHD-VLDTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAEQAIPIWVDKEREELKSFI 178 (474) T ss_pred CceeccC-cHHHHHHHHH-HHhccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEEEcccceEEEEcCCCCCceEEEE Confidence 9998653 3344444544 5568999999999999999999999999999999999999999999999998888999999 Q ss_pred EEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHH Q lcl|Aclame:pro 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDI 233 (456) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~l 233 (456) |+|...+ ..++.+|+++.+++|.......... ......+......+|.+++|||++|. |++|+|+|+++++| T Consensus 179 r~~~~~~--~~~~~~yt~~~~~~y~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~l 251 (474) T protein:vir:97 179 RYYKFNN--EEKVEFWTDTTVTYYVLENGGLIPD-----YYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSI 251 (474) T ss_pred EEEEecC--eEEEEEEeCCeEEEEEEcCCccccc-----cccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHH Confidence 9997654 4578899999999887654332221 11222334455678999999999884 57899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSAI 312 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 312 (456) ||+||+++|++++.++++++|+++++|...... .+... ....+.++.+++++++..+ .+.+.+.+.+.+ T Consensus 252 iDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~--~~~~~--------~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~ 321 (474) T protein:vir:97 252 IDAIDKRLSDAQNMFDESVELIYILKGYEGEDL--EEFMR--------GLKYYKAINVDGDGGVETIQVEVPVSSTKEYI 321 (474) T ss_pred HHHHHHHHHHHHHHHHHhcCceeeeecCCcccc--hhhhh--------hhhccceeeccCCCceeEEeecCCHHHHHHHH Confidence 999999999999999999999999999754321 11111 1123344444544443322 235667888888 Q ss_pred HHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecCCC Q lcl|Aclame:pro 313 KEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESPD 391 (456) Q Consensus 313 ~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~~~ 391 (456) +.+...|+..+++|...++++++|+||+||++++.++.+||+.+++.|+++|++++++++++.|.. +..+++++|+++. T Consensus 322 ~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~f~~~~ 401 (474) T protein:vir:97 322 DLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEISFNFNR 401 (474) T ss_pred HHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCc Confidence 999999999999999888888889999999999999999999999999999999999999988854 4467999999999 Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH--HHHH---hhc---ccccccCCCCC Q lcl|Aclame:pro 392 RVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ--ITLF---AGN---PVQRPQEDGSR 456 (456) Q Consensus 392 ~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~--~~~~---~~~---~~~~~~~~Gs~ 456 (456) |.|+++.|+++++ +|++|++|+++++|+++|..+++++.+.+.+ ...+ ... ..+...+.+++ T Consensus 402 p~~~~e~a~~~~~---~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (474) T protein:vir:97 402 MMNDAEQSQIIAQ---SQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNK 471 (474) T ss_pred ccCHHHHHHHHHH---cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCccc Confidence 9999999998865 4899999999999999875555544322221 1111 111 11111122222 No 46 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=100.00 E-value=4.7e-79 Score=449.98 Aligned_cols=413 Identities=11% Similarity=0.002 Sum_probs=328.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD 83 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d 83 (456) ||+++ |..|+++|..+.+||+++++||+|+|+|+....+.+ .+.++|+++||+++||++.++||+|+|++++.+ + T Consensus 1 l~~~~-l~~~i~~~~~~~~r~~~l~~yy~g~~~il~~~~~~~---~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~-~ 75 (429) T protein:vir:98 1 MTKDL-LSELIQKHRSFNLSYSAYKQLYEGDHAILQQKQKEQ---YKPDNRLVVNFAKYIVDTFNGYFIGVPVQTSHE-N 75 (429) T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHhcccccccccccccc---CCCcceeecchHHHHHHHHhhhhcccCceeecC-C Confidence 88885 677889999999999999999999999875544322 345678999999999999999999999998754 3 Q ss_pred ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCc Q lcl|Aclame:pro 84 SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAE 163 (456) Q Consensus 84 ~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~ 163 (456) +.....++++|+.|+|+.++.+++++++++|+||+++|++++|.+++++++|++++++||+....++.+++++|...+ . T Consensus 76 ~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~~~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~-~ 154 (429) T protein:vir:98 76 KQVSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEAGITYLTPLEAFIVYDDSIRQKPLFAVRYFYNKG-G 154 (429) T ss_pred hHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEEEEEEcccceEEEEeCCCCCceEEEEEEEEecC-c Confidence 455677999999999999999999999999999999999999999999999999999999888888999999987654 4 Q ss_pred eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 164 SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDIINRINRAEL 242 (456) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~liD~~~~~~s 242 (456) .....+|+.+.++.|... .+.+......+|.+++|||++|. |++|+|+|+++++|+|+||+++| T Consensus 155 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liD~~d~~~s 219 (429) T protein:vir:98 155 VLEGSYSDASNITYFKDG---------------EKGIEIGESEPHPFDGVPMIEYVENEERQSLLASVVTLINAFNKAIS 219 (429) T ss_pred eEEEEEEeCceEEEEEec---------------CCceEecccccccCCccceEEecCCCCCCCcHHHHHHHHHHHHHHHH Confidence 556778888777766432 12344455678999999999885 57899999999999999999999 Q ss_pred HHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecC------CCcceeeccccchHHHHHHHHHHH Q lcl|Aclame:pro 243 QLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELP------PGVDIWESQANDFTPMLSAIKEHI 316 (456) Q Consensus 243 ~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456) ++++.++++++|+++++|...+... ... ...++++..+ +++++... +.+.+.+.++++.+. T Consensus 220 ~~~~~~~~~~~p~~~i~g~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~l~ 286 (429) T protein:vir:98 220 EKANDVEYFADAYLKILGAELDDET----LKS--------LRDTRIINLKDTDAQQLTVEFLQK-PDADATQEHLLDRLE 286 (429) T ss_pred HHHHHHHHhcCceeeeecCCCCcch----hhh--------HhhCceeeccCCCCCCcceeEEee-cCCHHHHHHHHHHHH Confidence 9999999999999999997653211 111 1112233322 23344333 345677888899999 Q ss_pred HHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CccccceEEecCCCC Q lcl|Aclame:pro 317 RQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE----SVEDTVDVSFESPDR 392 (456) Q Consensus 317 ~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~----~~~~~i~v~f~~~~~ 392 (456) .+|+..+++|...++++ +|+||+||++++.+|..|++.+++.|+.+|++++++++++.+. .+..+++++|+++.| T Consensus 287 ~~i~~~s~~p~~~~~~~-gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~v~f~~~~p 365 (429) T protein:vir:98 287 NLIFRTAMVANISDESF-GTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKIGPKDWIGIKYKFTRNLP 365 (429) T ss_pred HHHHHHhCccccCcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCCCC Confidence 99999999998877665 7899999999999999999999999999999999999987653 234568999999999 Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH--HHHHh---hcccccccCC Q lcl|Aclame:pro 393 VTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ--ITLFA---GNPVQRPQED 453 (456) Q Consensus 393 ~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~--~~~~~---~~~~~~~~~~ 453 (456) +|+++.|++++|+ +|++|++|+++++|+++|..+++++.+++++ +...+ .......+.| T Consensus 366 ~~~~~~a~~~~kl--~g~is~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 429 (429) T protein:vir:98 366 ANLLEESQIAGNL--AGIVSEETQVGVLSIVENPQKEIERKNSDKSTLISRQAGGLNGQNTTTILE 429 (429) T ss_pred cCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC Confidence 9999999999987 5899999999999998875555543332221 11111 1112222333 No 47 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=100.00 E-value=1.1e-78 Score=448.08 Aligned_cols=438 Identities=13% Similarity=0.042 Sum_probs=328.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) .-.+|++++.+.+.+++..+++||+++++||+|+|++............+.++|+++||+++||++.++||+|+|++++. T Consensus 19 ~~~l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~G~p~~~~~ 98 (506) T protein:vir:94 19 LENLTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQSRRHEDGKADHRATHSFAKYIADFQTSYSVGNPINVKL 98 (506) T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcceeecchHHHHHHHhhhhhcccCceeec Confidence 33588888877666666778899999999999999775444333344456778899999999999999999999999876 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) .+ +...+.++++|+.|+++.++.+++++++++|+||+++|.+++|++++++++|++++++||+....++.+++++|... T Consensus 99 ~d-~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~~i~~~~p~~~~~v~dd~~~~~~~~~v~~~~~~ 177 (506) T protein:vir:94 99 PD-DGSNSGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGEDNEEHLAKLDPLDTFVIYSTDVDPKPIMAVRYHQIE 177 (506) T ss_pred Cc-chHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceEEEecCCCCCceEEEEEEEeee Confidence 53 44567899999999999999999999999999999999999999999999999999999988878899999988643 Q ss_pred C--Cc-----eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHH Q lcl|Aclame:pro 161 D--AE-----SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHID 232 (456) Q Consensus 161 ~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~ 232 (456) + +. ..+..+|+++.++.+... ...+......+|.++.|||++|. |++|.|+|+++++ T Consensus 178 ~~~~~~~~~~~~~~~~yt~~~~~~~~~~---------------~~~~~~~~~~~~~~g~vPvv~~~n~~~~~sd~e~~~~ 242 (506) T protein:vir:94 178 LVDDNQVSTINYVPETWTADTYTLYNPT---------------PIMGKMQVDTTKPITTFPVVEFKNSNFRLGDFENVLP 242 (506) T ss_pred eccCCceeEEEEEEEEEeCceEEEeccc---------------cCccceeccccccCCccceEEecCCCCCCCchhhhHH Confidence 2 21 234556788777776432 12333344567889999998875 5789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccc----------cccchhhhh----hhhhhhhhccceeecC------ Q lcl|Aclame:pro 233 IINRINRAELQLLSTMAIQAFRQRALKSTEHGLPN----------VDENGNAID----YASIFEAAPGALWELP------ 292 (456) Q Consensus 233 liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~----------~d~~g~~~~----~~~~~~~~~~~~~~~~------ 292 (456) |||+||+++|++++.++++++|+++++|....... .+..+.... .........++++..+ T Consensus 243 liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (506) T protein:vir:94 243 LIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVN 322 (506) T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHhhhhhcCeeeeccccccc Confidence 99999999999999999999999999996532221 011111000 0000111112222222 Q ss_pred ---CCcceeec-cccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 ---PGVDIWES-QANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAIL 368 (456) Q Consensus 293 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~ 368 (456) .++++..+ .+.+.+++..+++.+...|+..+++|+..++++++|+||+||++++.++.+||..+++.|+++|++++ T Consensus 323 ~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~ 402 (506) T protein:vir:94 323 GTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARY 402 (506) T ss_pred CccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 12233222 23466888889999999999999999988888889999999999999999999999999999999999 Q ss_pred HHHHHhcCC------CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHH-HH Q lcl|Aclame:pro 369 VKALQIEGE------SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQI-TL 441 (456) Q Consensus 369 ~l~~~~~g~------~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~-~~ 441 (456) ++++++.+. .+..+++++|+++.|.|+++.|++++|| +|++|.+|+++++|++++..+++++.+++.+. .. T Consensus 403 ~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~lp~v~d~~~E~~ri~~E~~~~~~ 480 (506) T protein:vir:94 403 QIISDIENSIHGDWTFDPQELTFTFRDNLPADNISQIKALVQA--GATLPQKYLYQQLPGVTNPQDIVDMMKEQSANGDY 480 (506) T ss_pred HHHHHHHHhcCCccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHhh Confidence 999887532 2345689999999999999999999988 58999999999999998755554433222211 11 Q ss_pred Hhhcccc---c---ccCCCCC Q lcl|Aclame:pro 442 FAGNPVQ---R---PQEDGSR 456 (456) Q Consensus 442 ~~~~~~~---~---~~~~Gs~ 456 (456) ..+..+. . ...++.+ T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~ 501 (506) T protein:vir:94 481 SFDQNGVISNDGQTNTTATQT 501 (506) T ss_pred cchhhcCCCcccCcccccccc Confidence 1111111 1 1111111 No 48 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=100.00 E-value=6.9e-78 Score=443.62 Aligned_cols=433 Identities=9% Similarity=0.009 Sum_probs=335.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCccc----chhhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNT----SAAWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~----~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) +..++++ +|+.++.+|..+.+|++++.+||.|+|+|....+.. ....++.++|+++||+++||++.++|++|+|+ T Consensus 24 ~~~~~~~-~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~r~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~ 102 (474) T protein:vir:95 24 QFETQEE-MIIRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVYGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPV 102 (474) T ss_pred ccCChHH-HHHHHHHHHHHHHHHHHHHHHHhcccCchhccccccccccccccccccceeccchHHHHHHHHHhhhccCCc Confidence 4444444 888999999999999999999999999987654432 22345667889999999999999999999999 Q ss_pred ccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 77 ~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) +++.+ |++..+.++.+ .+|+++..+.++++.++++|+||+++|.+++|++++++++|++++|+||+.....+.+++++ T Consensus 103 ~~~~~-d~~~~~~l~~~-~~n~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~ 180 (474) T protein:vir:95 103 TYSCE-DESVLKIIHDV-LDTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAEQAIPIWVDKEREELKSFIRY 180 (474) T ss_pred eeccC-chHHHHHHHHH-HhccHHHHHHHHHHHHhhcCcEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEE Confidence 99753 34444445554 45889999999999999999999999999999999999999999999999888889999999 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHHHHH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDIIN 235 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~liD 235 (456) |...+ ...+.+|+++++++|......+..... ....+......+|.++.|||++| +|++|+|+|+++++||| T Consensus 181 ~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~liD 253 (474) T protein:vir:95 181 YKFNN--EEKVEFWTDTTVTYYVLENGGLIPDYY-----YGANHIQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSLID 253 (474) T ss_pred EEEcC--eeEEEEEeCCeEEEEEEcCCccccccc-----cCcccccccccccCCCccceEeecCCCCCCCcHHHHHHHHH Confidence 87654 446889999999988765443322211 11222334556788999999987 45889999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeec-cccchHHHHHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSAIKE 314 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (456) +||+++|++++.++++++|+++++|....... +... ......++.+++++++..+ .+.+.+++...++. T Consensus 254 a~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~--~~~~--------~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (474) T protein:vir:95 254 AIDKRLSDAQNMFDESVELIYILKGYEGQDLE--EFMR--------GLKYYKAINVDGDGGVETIQVEVPVSSTKEYIDL 323 (474) T ss_pred HHHHHHHHHHHHHHHhcCceeeeecCCcccch--hhhh--------hhhccceeeccCCCceeEEeecCCHHHHHHHHHH Confidence 99999999999999999999999997643211 1101 1122334445555544322 24577888999999 Q ss_pred HHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccccceEEecCCCCC Q lcl|Aclame:pro 315 HIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-SVEDTVDVSFESPDRV 393 (456) Q Consensus 315 ~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-~~~~~i~v~f~~~~~~ 393 (456) +.++|+..+++|+..++++++|+||+||++++.++..||+.+++.|+++|++++++++++.|. .+..+++++|+++.|. T Consensus 324 l~~~i~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~v~f~~~~p~ 403 (474) T protein:vir:95 324 MRAYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNLKMDVKDIEISFNFNRMM 403 (474) T ss_pred HHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCCCc Confidence 999999999999988888888999999999999999999999999999999999999999875 4556799999999999 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) |+++.|+++++ +|++|++|++.++|++++..+++++.+++++............+.+++. T Consensus 404 d~~e~a~~~~~---~g~iS~et~i~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~ 463 (474) T protein:vir:95 404 NDAEQSQIIAQ---SQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQ 463 (474) T ss_pred CHHHHHHHHHh---cCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccccccCCCCc Confidence 99999998765 5999999999999999876555544332221111111111111222222 No 49 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=100.00 E-value=8.9e-78 Score=443.01 Aligned_cols=445 Identities=10% Similarity=0.040 Sum_probs=337.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccch------------hhhhhhhhhcCChHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA------------AWRSFQREARTNWGLMVRDSVA 68 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~------------~~~~~~~k~~~n~~~~iVd~~~ 68 (456) |.-..-.++|..++.+|..++++|+++++||+|+|+|+..++.... ...+.++|+++||+++||++.+ T Consensus 1 ~~~e~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~ 80 (471) T protein:vir:10 1 MEIEVIKKIISSQMVKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQKK 80 (471) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhhh Confidence 7777777888899999999999999999999999999865433221 1234567899999999999999 Q ss_pred HhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC-CCceEEEEEccceEEEEeeCCCC Q lcl|Aclame:pro 69 DRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD-DGTATITADSPETMVVSVDPLQP 147 (456) Q Consensus 69 ~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~-~g~~~i~~~~p~~~~~i~d~~~~ 147 (456) +|++|+|++++.+ +++..+.++.++ .|+|+..+.++++.++++|+||+++|.++ +|.+++++++|++++|+||+... T Consensus 81 ~yl~G~p~~~~~~-~~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~~~~~~~p~~~~~i~d~~~~ 158 (471) T protein:vir:10 81 AYALTYPPTFDVD-DKKVNDMIVDVL-GDDYERISKQLCVNAGNAGIAWLHVWKDASDNSFRYACVDSKEVIPIYSKSLD 158 (471) T ss_pred hhhcccCceeccC-ChHHHHHHHHHH-hcCHHHHHHHHHHHHhhCCeEEEEEEeeCCCCeeEEEEEcccceEEEEcCCCC Confidence 9999999999753 334455555555 58999999999999999999999999984 69999999999999999998888 Q ss_pred ceeEEEEEEEEecC----CceeEEEEEeCCeEEEEEEccccccccc-----ceeeccCCCcccccccccccCceeEEEEe Q lcl|Aclame:pro 148 WRIRAAMRWWRDLD----AESDFAIVWSGDGWQKFARPCFVQSSSR-----RRLVTRISDSWVPVGDAVVTGSPPPVVVY 218 (456) Q Consensus 148 ~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 218 (456) .++.+++|+|.... ....++++|+++.+++|........... ........+.+......+|+++.+||++| T Consensus 159 ~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~ 238 (471) T protein:vir:10 159 KKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPF 238 (471) T ss_pred CceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCCceeEEEe Confidence 88999999987532 3456788999999999876543321111 11112233455666777899999999988 Q ss_pred c-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcce Q lcl|Aclame:pro 219 Q-NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDI 297 (456) Q Consensus 219 ~-n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (456) . |.+|.|+|+++++|||+||.++|++++.+++|++|+++++|...... .+..........+... +.-...++++++ T Consensus 239 ~n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~--~~~~~~~~~~~~i~~~-~~~~~~~~~~~~ 315 (471) T protein:vir:10 239 KNNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNYGGQDK--QEFLEDLKRYKMIKMD-NDGMGDQSGVTT 315 (471) T ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcccc--chhHHHhhcCCeEEec-CCCCccCccceE Confidence 4 56799999999999999999999999999999999999999643211 1111111111101000 000011234444 Q ss_pred eeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 298 WESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE 377 (456) Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~ 377 (456) .+.+ .+.+++..+++.+.++|+..+++|+..++.+ +|+||+||++++.++.+||+.+++.|+++|++++++++++.|. T Consensus 316 l~~~-~~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~-gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 393 (471) T protein:vir:10 316 IAID-IPTEARNLILERTKKQIFISGQGVNPETDKL-GNSSGVALKFLYSLLELKAGNMETQFRSGYATLVKMILKHLGL 393 (471) T ss_pred Eeec-CChHHHHHHHHHHHHHHHHHhCCcCCCcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 4433 4567888899999999999999998877765 7999999999999999999999999999999999999999998 Q ss_pred CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 378 SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 378 ~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .+..+++++|+++.|.|+++.+++++++ +|++|.+|+++++|+++|..+++++.+++.+ ..+..+...++.++.- T Consensus 394 ~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~~p~v~D~~~E~eri~~E~~--~~~~~~~~~~~~~~~~ 468 (471) T protein:vir:10 394 SDKLKIKQTWTRNSINNDTEMAQVVSTL--ATITSRENVAKSNPIVEDWQDELRLQKAEQE--GRSEKLYDMEEVEHES 468 (471) T ss_pred CCCceeEEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHH--HHHhcccccCCCCCcc Confidence 8888899999999999999999999987 5899999999999999876555544332221 1111111111111111 No 50 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=100.00 E-value=1e-77 Score=442.65 Aligned_cols=441 Identities=10% Similarity=0.033 Sum_probs=336.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcc--------cchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRN--------TSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~--------~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |.-++-.++++.++.+|..+.+||+++++||+|+|+|...+.. .....++.++|+++||+++||++.++|++ T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~ 80 (470) T protein:vir:10 1 MELDALKKLIQNTSTSRNDLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYVA 80 (470) T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccchhcccccccccccccCCcccccchHHHHHHhhhhhee Confidence 8888888899999999999999999999999999998765432 22334567889999999999999999999 Q ss_pred cCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEE Q lcl|Aclame:pro 73 PNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRA 152 (456) Q Consensus 73 g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~ 152 (456) |+|++++.. +++....++++++. ++...+.++++.++++|+||+++|.+++|++++++++|.+++|+||+.+..++.+ T Consensus 81 G~p~~~~~~-d~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~~~~~~~p~~~~~v~d~~~~~~~~a 158 (470) T protein:vir:10 81 SVFPDIDVG-KDADNKKIIDVLGD-DRALTLNGLLVDSSNAGRAWLHYWIDEDGNFRYGIIQPDQITPIYATTLDNKLLG 158 (470) T ss_pred ccceeeecC-chHHHHHHHHHHhh-hHHHHHHHHHHHHhhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEE Confidence 999998754 45567788898874 5778888999999999999999999999999999999999999999998889999 Q ss_pred EEEEEEecCC----ceeEEEEEeCCeEEEEEEcccccccc-cceeeccC----CCcccccccccccCceeEEEEe-cCCC Q lcl|Aclame:pro 153 AMRWWRDLDA----ESDFAIVWSGDGWQKFARPCFVQSSS-RRRLVTRI----SDSWVPVGDAVVTGSPPPVVVY-QNPD 222 (456) Q Consensus 153 ~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~pv~~~-~n~~ 222 (456) ++|+|...+. ....+.+|+++.+++|.......... ........ ..........+|.++.+||++| +|++ T Consensus 159 ~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~ 238 (470) T protein:vir:10 159 ILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSKNKY 238 (470) T ss_pred EEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeecCCC Confidence 9999875432 23567899999999987554332221 11111110 1122234456788999998887 5778 Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeec------CCCcc Q lcl|Aclame:pro 223 GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWEL------PPGVD 296 (456) Q Consensus 223 ~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~------~~~~~ 296 (456) |+|+|+++++|||+||.++|++++.++++++|+++++|...... .+..... . ..+.+... +++++ T Consensus 239 g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~~--~~~~~~~------~-~~~~i~~~~~~~~~~~~~~ 309 (470) T protein:vir:10 239 RLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGADL--HQFMNDL------R-KYKSIKINNTGNGDNSGVD 309 (470) T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCcccc--chhhhhh------h-hcCeEeccCCCCCcCceeE Confidence 99999999999999999999999999999999999999754321 1111110 0 11112111 22344 Q ss_pred eeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 297 IWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG 376 (456) Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g 376 (456) +.+. +.+.+++...++.+.++|+..+++|+..+.++ ||+||+||++++++|.+||+.+++.|+++|++++++++++.+ T Consensus 310 ~lt~-~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~-gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~ 387 (470) T protein:vir:10 310 KLQI-DIPVEARDDALKITRKNIFLFGQGIDPANFES-SNASGVAIKMLYSHLELKAAKTQTYFEHAINELVRAIMRYLN 387 (470) T ss_pred EEee-cCChHHHHHHHHHHHHHHHHHhCCCCCCcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 4442 35568888899999999999999998877765 799999999999999999999999999999999999998766 Q ss_pred C--CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHH-HHhhccc--cccc Q lcl|Aclame:pro 377 E--SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQIT-LFAGNPV--QRPQ 451 (456) Q Consensus 377 ~--~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~-~~~~~~~--~~~~ 451 (456) . .+..+++++|+++.|.|+++.|++++++ +|++|.+|+++++|+++|..+++++.+++++.. .+..... ...+ T Consensus 388 ~~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~et~l~~~p~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~ 465 (470) T protein:vir:10 388 FSDADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSKEAVAKANPIVDDWQQELKDLAKDKEENDPYSNQADELNGKG 465 (470) T ss_pred ccCcccceeeEEeccCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccCCCC Confidence 4 3456899999999999999999999987 589999999999999887655554333222211 1111110 0111 Q ss_pred CCCCC Q lcl|Aclame:pro 452 EDGSR 456 (456) Q Consensus 452 ~~Gs~ 456 (456) .|+-+ T Consensus 466 ~dde~ 470 (470) T protein:vir:10 466 VNDEQ 470 (470) T ss_pred CCCCC Confidence 22222 No 51 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=100.00 E-value=1.8e-77 Score=441.39 Aligned_cols=433 Identities=15% Similarity=0.091 Sum_probs=328.3 Q ss_pred CCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCcccccCcc-cchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRI-DDGMSRVRLLARYSNGDAPLPELTRN-TSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~-~~~~~~~~~~~~YY~g~~~i~~~~~~-~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) -..++++ .++.++.+| ..+.++|+++.+||+|+|+....+.. ......+.++|+++||+++||++.++|++|+|+++ T Consensus 27 ~~~~~~~-~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~i~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~ 105 (481) T protein:vir:10 27 AELLKEE-NLRNFISRHQTEQVPRLEMLESYYLNRNTDILAGERRLQKYGDKADHRAVHNYAKYVSRFIVGYLTGNPITI 105 (481) T ss_pred hhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCccccccccccccceeecchHHHHHHHHHhhhccCCceE Confidence 1234454 466666665 56789999999999999875543332 22333456778999999999999999999999998 Q ss_pred CCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEE Q lcl|Aclame:pro 79 GGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWR 158 (456) Q Consensus 79 ~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~ 158 (456) +. ++++..+.++++|++|+|+.++.+++++++++|+||+++|.+++|.+++++++|++++++||+....++.+++++|+ T Consensus 106 ~~-~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~ 184 (481) T protein:vir:10 106 TH-QDNQTNDKIIELNDLNDADEVNSDLALNLSIYGRAYEIVYRDFEDRDTFKVLDPKSTFVVYDQTLDKKVVAGVRYFE 184 (481) T ss_pred ec-CChhHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCeEEEEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 65 45566788999999999999999999999999999999999999999999999999999999988888999999987 Q ss_pred ecCC---ceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHHH Q lcl|Aclame:pro 159 DLDA---ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDII 234 (456) Q Consensus 159 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~li 234 (456) ..+. ...++.+|+++.+++|.... +.|......+|.++.+||++|. |++|.|+|+++++|| T Consensus 185 ~~~~~~~~~~~~~~y~~~~i~~~~~~~---------------~~~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~li 249 (481) T protein:vir:10 185 KQDKDKVPVQHVEVYTTDKIYYIEIKG---------------GTYHRVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALI 249 (481) T ss_pred EeeCCCceEEEEEEEecCeEEEEEecC---------------CceeecccccccCCceeEEEeecCCCCCCchhhHHHHH Confidence 5443 24577899999999886432 3444556678999999998885 578999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceee-c--CCCcceeeccccchHHHHHH Q lcl|Aclame:pro 235 NRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWE-L--PPGVDIWESQANDFTPMLSA 311 (456) Q Consensus 235 D~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 311 (456) |+||+++|++++.++++++|+++++|..... ++++..+.....+....+.... . ++++++... +.+.+.+.++ T Consensus 250 da~~~~~s~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 325 (481) T protein:vir:10 250 DLYDSAQSDTANYMTDLNDAMLAIIGNVDLD---SEDAKAFRDANMIHLEPGTNANGSEGKAEVKYVYK-QYDVAGVEAY 325 (481) T ss_pred HHHHHHHHHHHHHHHHhcCceeEeecCcCCC---ccchhhhhhccceeccccccccCCCCCcceeEEee-cCCHHHHHHH Confidence 9999999999999999999999999864322 2333333222222211111111 1 122333232 3455777888 Q ss_pred HHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CccccceEE Q lcl|Aclame:pro 312 IKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-----SVEDTVDVS 386 (456) Q Consensus 312 ~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-----~~~~~i~v~ 386 (456) ++.+.+.|+..+++|+..++..++|+||+||++++++|.+||+++++.|+.+|++++++++++.+. .+..+++++ T Consensus 326 ~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~ 405 (481) T protein:vir:10 326 KKRLQNDIHKYTNTPDLNDEQFSGVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNYAELTIT 405 (481) T ss_pred HHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeEE Confidence 888888999999999999988888999999999999999999999999999999999999887543 234578999 Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHH---HHHHHHHHH----Hhhcccc-cccCCCCC Q lcl|Aclame:pro 387 FESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDL---DRAREQITL----FAGNPVQ-RPQEDGSR 456 (456) Q Consensus 387 f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~---~~~~e~~~~----~~~~~~~-~~~~~Gs~ 456 (456) |+++.|+|.++.|++++|| +|++|.+|+++++|++++..+++++ |+.++.-.. +.+.... .+.+||.= T Consensus 406 f~~~~~~~~~~~a~~~~kl--~g~is~et~~~~l~~i~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~dd~~g 481 (481) T protein:vir:10 406 FTPNLPKSMMESINAFNAL--SGGVSESTRLSLLDFIDNPKEELEKMQEEEAQREKQADKRGYGEAFENHLNVDDSNG 481 (481) T ss_pred eCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhhccCCccCCCCCCCCCCCC Confidence 9999999999999999988 4889999999999998875555443 222211111 1111101 11111111 No 52 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=100.00 E-value=2.3e-77 Score=440.72 Aligned_cols=439 Identities=11% Similarity=0.030 Sum_probs=339.0 Q ss_pred CC---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccch----hhhhhhhhh Q lcl|Aclame:pro 1 MT---------------------ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREA 55 (456) Q Consensus 1 ~~---------------------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~----~~~~~~~k~ 55 (456) |. ..+..++|.+++.+|..+.++|+++++||+|+|++.....+... ...+.++|+ T Consensus 1 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki 80 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHKENIDNITMGERYYNHHPDILDAPPKRDVNGDYDETKPDWRM 80 (478) T ss_pred CccccCCCCchhHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcccccccccccccccccccee Confidence 22 22456789999999999999999999999999998766543222 223466789 Q ss_pred cCChHHHHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEcc Q lcl|Aclame:pro 56 RTNWGLMVRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSP 135 (456) Q Consensus 56 ~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p 135 (456) ++||+++||++.++|++|+|++++.++ ++....++++++ |+++..+.+++++++++|+||+++|.+++|++++++++| T Consensus 81 ~~n~~~~ivd~~~~~l~g~~~~~~~~~-d~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~~~~~~~p 158 (478) T protein:vir:10 81 YTNYHQNLVDQKVAYAVANPVTFGVDN-DKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRVPA 158 (478) T ss_pred ccchHHHHHHHHHhhhccCCeeeecCC-hHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcc Confidence 999999999999999999999997543 445666777775 889999999999999999999999999999999999999 Q ss_pred ceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEE Q lcl|Aclame:pro 136 ETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPV 215 (456) Q Consensus 136 ~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 215 (456) ++++|+||+.....+.+++++|...+ ..++++|+++++++|............. .......+......+|.++.+|| T Consensus 159 ~~~~~i~d~~~~~~~~~~v~~~~~~~--~~~~~~y~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vPv 235 (478) T protein:vir:10 159 EQAVPIWTNKERDELQAFIRVYELDG--AERVEYWTKDDVTYYELKEGQLIPDFYR-SDDHIQPHYYQGNKLMSWGRVPF 235 (478) T ss_pred cceEEEEcCCCCCceEEEEEEEEecC--ceEEEEEeCCeEEEEEEcCCeeeccccc-cccccccceecccccccCCccce Confidence 99999999888888999999997543 4568899999998887654332222111 11223344455667899999999 Q ss_pred EEe-cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeec--C Q lcl|Aclame:pro 216 VVY-QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWEL--P 292 (456) Q Consensus 216 ~~~-~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~--~ 292 (456) ++| +|++|.|+|+++++|||+||+++|++++.++++++|+++++|........ ..+ ....+.++.. + T Consensus 236 v~~~n~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~~~~~~~-~~~---------~~~~~~~~~~~~~ 305 (478) T protein:vir:10 236 IPFKNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDMKD-FMH---------NLKYYKAISVAGE 305 (478) T ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccch-hhh---------hhhhcceEEecCC Confidence 888 56789999999999999999999999999999999999999976543211 011 1111222222 2 Q ss_pred CCcceeec-cccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 PGVDIWES-QANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKA 371 (456) Q Consensus 293 ~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~ 371 (456) .++++..+ .+.+.+++...++.+.+.|+..+++|+..++++++|+||+||+++++.|.+||+.+++.|+.+|+++++++ T Consensus 306 ~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li 385 (478) T protein:vir:10 306 SGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYI 385 (478) T ss_pred CCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 33443322 23467888888999999999999999988888888999999999999999999999999999999999999 Q ss_pred HHhcCC-CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH-H-HH---Hhh- Q lcl|Aclame:pro 372 LQIEGE-SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ-I-TL---FAG- 444 (456) Q Consensus 372 ~~~~g~-~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~-~-~~---~~~- 444 (456) +++.|. .+..+++++|+++.|+|.++.|++++|| +|++|++|+++++|+++|..+++++.+++++ . .. +.. T Consensus 386 ~~~~g~~~~~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~ 463 (478) T protein:vir:10 386 IDFYRLDVKVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILSNHAWVEDPVAEMERIEQENIELNQQLPDIEEG 463 (478) T ss_pred HHHhCCCcccccceEEecCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccc Confidence 998874 4556799999999999999999999987 6899999999999998875555544332221 1 11 111 Q ss_pred -cccccccCCCCC Q lcl|Aclame:pro 445 -NPVQRPQEDGSR 456 (456) Q Consensus 445 -~~~~~~~~~Gs~ 456 (456) ...+.++++.++ T Consensus 464 ~~~~~~~~~~~~~ 476 (478) T protein:vir:10 464 LNGEQQRQSENNQ 476 (478) T ss_pred cCCCCCCCCCCCC Confidence 112223333333 No 53 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=100.00 E-value=4.8e-77 Score=438.98 Aligned_cols=437 Identities=11% Similarity=0.028 Sum_probs=340.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccch----hhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~----~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) -...+..++++.++++|..+.++++++.+||+|+|+|+..+.+... ...+.++|+++||+++||++.++||+|+|+ T Consensus 22 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~ 101 (474) T protein:vir:96 22 PKYETQEEMIIRLINDHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGEIDPLKPDWRMFTNYHQNLVDQKVAYAVANPV 101 (474) T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhccchhcccccccccccchhcccchHHHHHHhhhhhhcccCc Confidence 2345667799999999999999999999999999999877654332 223567789999999999999999999999 Q ss_pred ccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 77 ~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) +++.+ +++..+.++++|+ |++.....+++++++++|+||+++|.+++|+++++.++|++++|+||+.....+.+++++ T Consensus 102 ~~~~~-d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~vr~ 179 (474) T protein:vir:96 102 TFSSD-DDKSLKTIQEVLN-HKWDDKLVDILTAASNKGIEWLQPYIDENGEFKTFRVPAEQAIPIWTNKERDTLKAFIRY 179 (474) T ss_pred eeecC-chHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEE Confidence 99654 4556777888875 678999999999999999999999999999999999999999999999888889999999 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHHHHH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDIIN 235 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~liD 235 (456) |...+ ..++++|+++.+++|............... ............+|.++.+||++| +|++|+|+|+++++||| T Consensus 180 ~~~~~--~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~liD 256 (474) T protein:vir:96 180 YRLDG--AERVEYWTDSDVTYYEYQDGILIPDYYHGE-EHIQSHYYVGNKRVSWGRVPFIPFKNNPQEMSDLFMYKTIID 256 (474) T ss_pred EeecC--ceEEEEEeCCeEEEEEecCCceeecccccc-ccccccccccccccCCCceeEEEeccCCCCCCcHHHHHHHHH Confidence 97543 456889999999988755433322222111 122333445667899999999888 56789999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecC-CCcceeecc-ccchHHHHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELP-PGVDIWESQ-ANDFTPMLSAIK 313 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~ 313 (456) +||.++|++++.++++++|+++++|...... .+ . ......++++.++ .++++..+. +.+.+++...++ T Consensus 257 a~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~----~~-~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 326 (474) T protein:vir:96 257 AMDKRLSDTQNTFDESTELIYILKGYEGQDL----DE-F-----MRNLKYYKAINVDGDGSGVDTIQIEVPVQSSKEYLD 326 (474) T ss_pred HHHHHHHHHHHHHHHhccceeeeecCCcccc----cc-h-----hhhhhcCceEEecCCCCceeEEeecCChHHHHHHHH Confidence 9999999999999999999999999754321 11 0 0111233444443 344444332 456788889999 Q ss_pred HHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecCCCC Q lcl|Aclame:pro 314 EHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESPDR 392 (456) Q Consensus 314 ~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~~~~ 392 (456) .+.++|+..+++|+..++++++|+||+||+++++++.+||..+++.|+++|++++++++++.|.. +..+++++|+++.| T Consensus 327 ~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~~~~~~~~i~i~f~~~~p 406 (474) T protein:vir:96 327 MLRDYVIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLNIKVQDVEITFNFNVM 406 (474) T ss_pred HHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccCCC Confidence 99999999999999998888889999999999999999999999999999999999999988754 45678999999999 Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 393 VTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 393 ~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .|+++.++++. ++|++|.+|+++++|++++..+++++.+++++ ......+...++++|.. T Consensus 407 ~~~~e~~~~~~---~ag~iS~et~~~~~~~v~d~~~E~~ri~~E~~-e~~~~~~~~~~~~~~~~ 466 (474) T protein:vir:96 407 VNELEQSQIGV---QSQYLSKETVVTNHPWVDDPVAELERIEQDNI-DFNKQLPPLEGDANGRA 466 (474) T ss_pred cCHHHHHHHHH---hcCCCchHHHHHhCCCCCCHHHHHHHHHHHHH-HHHhccccccccccccc Confidence 99999998754 47999999999999998875555443322211 11111111222233333 No 54 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=100.00 E-value=2.9e-77 Score=440.17 Aligned_cols=440 Identities=11% Similarity=0.056 Sum_probs=327.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchh-------hhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAA-------WRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~-------~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) -......++++.++.+| +.++++++++||.|+|+|...++..... ..+.++|+++||+++||++.++|++| T Consensus 25 ~~~~~~~~~i~~~i~~~--~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~yl~g 102 (503) T protein:vir:59 25 EIAEPDTTMIQKLIDEH--NPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKTNNRTSHAWHKLFVDQKTQYLVG 102 (503) T ss_pred hccchhHHHHHHHHHhh--cHHHHHHHHHHhccccchhhccchhcccccccccccccccceeecchHHHHHHHHHhhhhc Confidence 11222345677777777 4688999999999999998766543322 22456789999999999999999999 Q ss_pred CCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEE Q lcl|Aclame:pro 74 NGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAA 153 (456) Q Consensus 74 ~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) +|++++.+ ++ ....+++.|..|+++..+.+++++++++|+||+++|.+++|++++++++|++++++||+.+..++.++ T Consensus 103 ~~~~~~~~-d~-~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~~~~p~~~~~i~d~~~~~~~~~~ 180 (503) T protein:vir:59 103 EPVTFTSD-NK-TLLEYVNELADDDFDDILNETVKNMSNKGIEYWHPFVDEEGEFDYVIFPAEEMIVVYKDNTRRDILFA 180 (503) T ss_pred CCeeeccC-cH-HHHHHHHHHHhcCHHHHHHHHHHHHhhCCeEEEEEeecCCCceEEEEEccceeEEEEeCCCCCceEEE Confidence 99998653 33 34445566677999999999999999999999999999999999999999999999999988899999 Q ss_pred EEEEEecCC---ceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHH Q lcl|Aclame:pro 154 MRWWRDLDA---ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEP 229 (456) Q Consensus 154 i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~ 229 (456) +++|...+. ...++++|+++.+++|......+....... ......+......+|.++++|+++| +|++|+|+|++ T Consensus 181 ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vPiv~~~nn~~~~sd~~~ 259 (503) T protein:vir:59 181 LRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYG-ENNPRPHMTKGGQAIGWGRVPIIPFKNNEEMVSDLKF 259 (503) T ss_pred EEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCccccccccc-ccccccceeecceeccCCccceEEecCCCCCCcchhh Confidence 999875432 356788999999999876654443322211 1122233344566788999998887 56789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCC--cceeeccccchHH Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG--VDIWESQANDFTP 307 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 307 (456) +++|||+||+++|++++.++++++|+++++|...... .+... ....+.++..+.+ +++.+. +.+.+. T Consensus 260 ~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~l~~-~~~~~~ 328 (503) T protein:vir:59 260 YKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENP--KEFTA--------NLRYHSVIKVSGDGGVDTLRA-EIPVDS 328 (503) T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCeeEeecCCcccc--chhhh--------hhhcccceeccCCCcceeEec-cCCHHH Confidence 9999999999999999999999999999999754321 11111 1122334444444 444332 234566 Q ss_pred HHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------Cccc Q lcl|Aclame:pro 308 MLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE------SVED 381 (456) Q Consensus 308 ~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~------~~~~ 381 (456) +...++.+...|+..+++|...++.+++|+||+||++++.++.++|+.+++.|+.+|++++++++++.+. .... T Consensus 329 ~~~~~~~l~~~i~~~s~~p~~~~~~~~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~ 408 (503) T protein:vir:59 329 AAKELERIQDELYKSAQAVDNSPETIGGGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTGKGDFNPDK 408 (503) T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc Confidence 6677777777888888888777777778999999999999999999999999999999999998776432 1234 Q ss_pred cceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH--HHHHhhcccccc------cCC Q lcl|Aclame:pro 382 TVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ--ITLFAGNPVQRP------QED 453 (456) Q Consensus 382 ~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~--~~~~~~~~~~~~------~~~ 453 (456) +++++|+++.|+|+++.|++++||+++|++|++|+++++|++++..+++++.+++.+ ..+......+.+ +++ T Consensus 409 ~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (503) T protein:vir:59 409 ELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPFVQDPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDD 488 (503) T ss_pred ceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCC Confidence 689999999999999999999999999999999999999999875555443322211 111111111100 011 Q ss_pred CCC Q lcl|Aclame:pro 454 GSR 456 (456) Q Consensus 454 Gs~ 456 (456) |.. T Consensus 489 ~~~ 491 (503) T protein:vir:59 489 PNA 491 (503) T ss_pred CCC Confidence 111 No 55 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=100.00 E-value=6e-77 Score=438.47 Aligned_cols=439 Identities=11% Similarity=0.037 Sum_probs=339.3 Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccch----hhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MT--ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~--~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~----~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) |- +.+..++|+.|+++|..+.+|++++.+||+|+|+|.....+... ...+.++|+++||+++||++.++|++|+ T Consensus 20 ~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~ivd~~~~yl~g~ 99 (478) T protein:vir:10 20 IKPKYETQEEMILRLVREHKENIDNITMGERYYNHHPDILDAPFKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVAN 99 (478) T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcccccccccccceeccchHHHHHHHHhhhhccc Confidence 22 23667799999999999999999999999999998766543222 2335667899999999999999999999 Q ss_pred CcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 75 GITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 75 ~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) |++++.+ +++....++++|+ |+++..+.++++.++++|++|+++|.+++|++++++++|++++|+||+....++.+++ T Consensus 100 p~~~~~~-~~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~~~~~~p~~~~~v~d~~~~~~~~~~i 177 (478) T protein:vir:10 100 PVTFGVD-NDKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRVPAEQAVPIWTNKERDELQAFI 177 (478) T ss_pred CceeecC-ChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 9998654 4455666777775 8999999999999999999999999999999999999999999999988888899999 Q ss_pred EEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHHH Q lcl|Aclame:pro 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDI 233 (456) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~l 233 (456) |+|...+ ..++++|+++.++.|........... .........+......+|.+++|||++| ||++|.|+|+++++| T Consensus 178 r~~~~~~--~~~~~~y~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~l 254 (478) T protein:vir:10 178 RVYELDG--AERVEYWTKDDVTFYELKEGQLIPDF-YRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTI 254 (478) T ss_pred EEEeeeC--ceEEEEEeCCcEEEEEecCCeeeccc-cccccccccceecccccccCCcceEEEeccCCCCCCcHHHHHHH Confidence 9986543 45688999999988865433221111 1111222344456667899999999887 567899999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceee-cC--CCcceeeccccchHHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWE-LP--PGVDIWESQANDFTPMLS 310 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 310 (456) ||+||+++|++++.++++++|+++++|...+... +.... .. ..+.++. .+ +++++... +.+.+.+.+ T Consensus 255 iDa~~~~~S~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~------~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~ 324 (478) T protein:vir:10 255 IDALDKRLSDTQNTFDESVELIYILKGYEGEDMK--DFMHN------LK-YYKAISVAGESGSGVDTIKV-EVPIDSVKE 324 (478) T ss_pred HHHHHHHHHHHHHHHHHhhCcceeeecCCccccc--chhhh------hh-hCceeEecCCCCCcceEEee-cCCHHHHHH Confidence 9999999999999999999999999997643211 11111 11 1122222 22 33444333 346678888 Q ss_pred HHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecC Q lcl|Aclame:pro 311 AIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFES 389 (456) Q Consensus 311 ~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~ 389 (456) .++.+.+.|+..+++|...++++++|+||+||++++.+|.+||+.+++.|+++|++++++++++.|.. +..+++++|++ T Consensus 325 ~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~d~~~i~i~f~~ 404 (478) T protein:vir:10 325 YTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVRVQDIEITFNF 404 (478) T ss_pred HHHHHHHHHHHHhCCcCcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeCC Confidence 89999999999999999888888889999999999999999999999999999999999999988754 44579999999 Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH-HHHHh--------hcccccccCCCCC Q lcl|Aclame:pro 390 PDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ-ITLFA--------GNPVQRPQEDGSR 456 (456) Q Consensus 390 ~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~-~~~~~--------~~~~~~~~~~Gs~ 456 (456) +.|.|.++.+++++++ +|++|++|+++.+|++++..+++++.+++.+ ..... +.....+.++|+. T Consensus 405 ~~p~~~~e~~~~~~~~--~g~iS~et~i~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 405 NVMVNELENSQIAMNS--TGLLSKETILGNHSWVQDPVAEMERIEQENIELNQQLPDIEEGLNDEQQRQSEDNQSE 478 (478) T ss_pred CCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCcccccccCcCCCCC Confidence 9999999999999877 5899999999999999876665544332221 11111 1112223344444 No 56 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=100.00 E-value=1.8e-76 Score=435.87 Aligned_cols=426 Identities=12% Similarity=0.015 Sum_probs=327.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc---ccCc-----------ccchhhhhhhhhhcCChHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP---ELTR-----------NTSAAWRSFQREARTNWGLMVRDS 66 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~---~~~~-----------~~~~~~~~~~~k~~~n~~~~iVd~ 66 (456) -..+|++ +|+.+++.|...++|+.++.+||+|.++.. ..+. .......+.++|+++||+++||++ T Consensus 12 ~~~~~~e-~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~ 90 (474) T protein:vir:94 12 AQGILPK-HIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDT 90 (474) T ss_pred ccCCCHH-HHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccccchHHHHHHh Confidence 2355665 688889999999999999999999976532 1110 011122345678999999999999 Q ss_pred HHHhhhcCCcccCCCcc----ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEe Q lcl|Aclame:pro 67 VADRIIPNGITVGGSAD----SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSV 142 (456) Q Consensus 67 ~~~~l~g~~~~~~~~~d----~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~ 142 (456) .++|++|+|++++..++ +.....|+++|+.|+++.++.+++++++++|+||+++|.+++|++++++++|++++|+| T Consensus 91 ~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~~i~p~~~~~v~ 170 (474) T protein:vir:94 91 RVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIKNIDPYNVIFVG 170 (474) T ss_pred HhhheeccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEEEEcccceEEEE Confidence 99999999999875433 23455688899999999999999999999999999999999999999999999999999 Q ss_pred eCCCCceeEEEEEEEEecCCc----eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe Q lcl|Aclame:pro 143 DPLQPWRIRAAMRWWRDLDAE----SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY 218 (456) Q Consensus 143 d~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 218 (456) |+.. +..+++++|...++. ..++.+|+++.++.|.... .+.+......+|.++.|||++| T Consensus 171 d~~~--~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~vPvv~~ 234 (474) T protein:vir:94 171 DNIL--EPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEG--------------IDALQEVGRYEHLFDYNPLFGV 234 (474) T ss_pred cCCC--ceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecC--------------CCcccccccccCCCCccceEEe Confidence 8643 456788887654322 2467789999988876431 2345556677899999999887 Q ss_pred -cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcce Q lcl|Aclame:pro 219 -QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDI 297 (456) Q Consensus 219 -~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (456) +|++|+|+|+++++|+|+||.++|++++.++++++|+++++|..... +.+... ...+.++..+.++++ T Consensus 235 ~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~~~~----~~~~~~-------~~~~~i~~~~~~~~~ 303 (474) T protein:vir:94 235 PNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSE----EMIQET-------QKSGAFELFDKDMDV 303 (474) T ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCCc----hhhhhh-------hhcceeEecCCCCce Confidence 66789999999999999999999999999999999999999975432 111111 123455555555555 Q ss_pred eecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 298 WESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG 376 (456) Q Consensus 298 ~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g 376 (456) ..+. +.+.+.+.+.++.+.++|+..+++|+..++++++|+||+||++++++|.+||+.+++.|+++|++++++++++.+ T Consensus 304 ~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~ 383 (474) T protein:vir:94 304 KYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALK 383 (474) T ss_pred eEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 4332 346688888999999999999999998888888999999999999999999999999999999999999987643 Q ss_pred C-------CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH--HHHHhhccc Q lcl|Aclame:pro 377 E-------SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ--ITLFAGNPV 447 (456) Q Consensus 377 ~-------~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~--~~~~~~~~~ 447 (456) . .+..+++++|+++.|.|.++.|++++|+ .|++|++|+++++|++++..+++++.+++++ ...+..... T Consensus 384 ~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~~~~~~ 461 (474) T protein:vir:94 384 RKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDE 461 (474) T ss_pred hccCCCCccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccC Confidence 2 2234789999999999999999999988 4899999999999999876665554332221 222211111 Q ss_pred ccccCCCCC Q lcl|Aclame:pro 448 QRPQEDGSR 456 (456) Q Consensus 448 ~~~~~~Gs~ 456 (456) ...++++-. T Consensus 462 ~~~~~~~~~ 470 (474) T protein:vir:94 462 GDANDKSQN 470 (474) T ss_pred CCcCCCCcc Confidence 111111111 No 57 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=100.00 E-value=1.8e-76 Score=435.87 Aligned_cols=426 Identities=12% Similarity=0.015 Sum_probs=327.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc---ccCc-----------ccchhhhhhhhhhcCChHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP---ELTR-----------NTSAAWRSFQREARTNWGLMVRDS 66 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~---~~~~-----------~~~~~~~~~~~k~~~n~~~~iVd~ 66 (456) -..+|++ +|+.+++.|...++|+.++.+||+|.++.. ..+. .......+.++|+++||+++||++ T Consensus 12 ~~~~~~e-~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~ 90 (474) T protein:vir:10 12 AQGILPK-HIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDT 90 (474) T ss_pred ccCCCHH-HHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccccchHHHHHHh Confidence 2355665 688889999999999999999999976532 1110 011122345678999999999999 Q ss_pred HHHhhhcCCcccCCCcc----ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEe Q lcl|Aclame:pro 67 VADRIIPNGITVGGSAD----SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSV 142 (456) Q Consensus 67 ~~~~l~g~~~~~~~~~d----~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~ 142 (456) .++|++|+|++++..++ +.....|+++|+.|+++.++.+++++++++|+||+++|.+++|++++++++|++++|+| T Consensus 91 ~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~~~~i~p~~~~~v~ 170 (474) T protein:vir:10 91 RVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDIRIKNIDPYNVIFVG 170 (474) T ss_pred HhhheeccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCeeEEEEEcccceEEEE Confidence 99999999999875433 23455688899999999999999999999999999999999999999999999999999 Q ss_pred eCCCCceeEEEEEEEEecCCc----eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe Q lcl|Aclame:pro 143 DPLQPWRIRAAMRWWRDLDAE----SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY 218 (456) Q Consensus 143 d~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 218 (456) |+.. +..+++++|...++. ..++.+|+++.++.|.... .+.+......+|.++.|||++| T Consensus 171 d~~~--~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~vPvv~~ 234 (474) T protein:vir:10 171 DNIL--EPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEG--------------IDALQEVGRYEHLFDYNPLFGV 234 (474) T ss_pred cCCC--ceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecC--------------CCcccccccccCCCCccceEEe Confidence 8643 456788887654322 2467789999988876431 2345556677899999999887 Q ss_pred -cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcce Q lcl|Aclame:pro 219 -QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDI 297 (456) Q Consensus 219 -~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (456) +|++|+|+|+++++|+|+||.++|++++.++++++|+++++|..... +.+... ...+.++..+.++++ T Consensus 235 ~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~~~~----~~~~~~-------~~~~~i~~~~~~~~~ 303 (474) T protein:vir:10 235 PNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSE----EMIQET-------QKSGAFELFDKDMDV 303 (474) T ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCCc----hhhhhh-------hhcceeEecCCCCce Confidence 66789999999999999999999999999999999999999975432 111111 123455555555555 Q ss_pred eecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 298 WESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG 376 (456) Q Consensus 298 ~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g 376 (456) ..+. +.+.+.+.+.++.+.++|+..+++|+..++++++|+||+||++++++|.+||+.+++.|+++|++++++++++.+ T Consensus 304 ~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~ 383 (474) T protein:vir:10 304 KYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALK 383 (474) T ss_pred eEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 4332 346688888999999999999999998888888999999999999999999999999999999999999987643 Q ss_pred C-------CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH--HHHHhhccc Q lcl|Aclame:pro 377 E-------SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ--ITLFAGNPV 447 (456) Q Consensus 377 ~-------~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~--~~~~~~~~~ 447 (456) . .+..+++++|+++.|.|.++.|++++|+ .|++|++|+++++|++++..+++++.+++++ ...+..... T Consensus 384 ~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~~~~~~ 461 (474) T protein:vir:10 384 RKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDE 461 (474) T ss_pred hccCCCCccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccC Confidence 2 2234789999999999999999999988 4899999999999999876665554332221 222211111 Q ss_pred ccccCCCCC Q lcl|Aclame:pro 448 QRPQEDGSR 456 (456) Q Consensus 448 ~~~~~~Gs~ 456 (456) ...++++-. T Consensus 462 ~~~~~~~~~ 470 (474) T protein:vir:10 462 GDANDKSQN 470 (474) T ss_pred CCcCCCCcc Confidence 111111111 No 58 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=100.00 E-value=5.4e-76 Score=433.21 Aligned_cols=436 Identities=9% Similarity=0.004 Sum_probs=341.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchh----hhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAA----WRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~----~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) ....+++ ++..|+.+|..+.++|+++++||+|+|+++......... ..+.++|+++||++.||++.++|++|+|+ T Consensus 23 ~~~~~~~-~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~g~p~ 101 (468) T protein:vir:96 23 QYETQEE-MILRLITKHKENVEDITVGERYYNHQPDVLFNAPKRNVKGEIDPFKPDWRMYTNYHQNLVDQKVAYAVANPV 101 (468) T ss_pred cccCcHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHhhhccCCc Confidence 3344444 778899999999999999999999999998765543321 23456789999999999999999999999 Q ss_pred ccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 77 ~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) +++.+ +++....++++|+ |+++..+.+++++++++|+||+++|.+++|.+++++++|++++|+||+....++.+++++ T Consensus 102 ~~~~~-d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~~~~~~~~~~~~ir~ 179 (468) T protein:vir:96 102 TYGTE-DEKSLKTIQEVLN-HKWDDKLVDILTAASNKGVEWIQPYVDEQGEFKTFRVPAEQAIPIWTNKERDELKAFIRL 179 (468) T ss_pred eeccC-ChHHHHHHHHHHh-cCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEcccceEEEEcCCCCCceEEEEEE Confidence 99754 4456777888886 789999999999999999999999999999999999999999999998888889999999 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHHHHH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHIDIIN 235 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~liD 235 (456) |...+ ..++++|+++.+++|............... .....+......+|.+++||+++|. |++|.|+|+++++|+| T Consensus 180 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iPvv~~~n~~~g~sd~e~v~~liD 256 (468) T protein:vir:96 180 YELDG--GERVEYWTANDVTFYELKDGQLIPDYYQGE-EHVQAHYYVGNKSMSWNRVPFIPFKNNPQEVSDLFMYKTIID 256 (468) T ss_pred EEecC--ceEEEEEeCCeEEEEEEcCCceeecccccc-cccccceeeccccccCCcccEEEecCCCCCCCchHHHHHHHH Confidence 87654 346789999999888755433222211111 1222344556678999999999884 5789999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeec--CCCcceeecc-ccchHHHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWEL--PPGVDIWESQ-ANDFTPMLSAI 312 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~ 312 (456) +||.++|++++.++++++|+++++|...+.. +... .....++++.+ ++++++..+. +.+.+.+...+ T Consensus 257 a~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~-----~~~~-----~~~~~~~~i~~~~d~~~~~~~l~~~~~~~~~~~~~ 326 (468) T protein:vir:96 257 AMDKRLSDTQNTFDEATELIYVLKGYEGEDL-----EEFM-----YNLKYYKAINVDGDGSGGVDTIQIDVPVQSAKEYL 326 (468) T ss_pred HHHHHHHHHHHHHHHhcCceeeeecCCcccc-----chhh-----hhhhcCceEEecCCCCCcceEEeecCChHHHHHHH Confidence 9999999999999999999999999754321 1110 01112223332 2333333222 34567888889 Q ss_pred HHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecCCC Q lcl|Aclame:pro 313 KEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESPD 391 (456) Q Consensus 313 ~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~~~ 391 (456) +.+.++|+..+++|+..++++++|+||+||+++++++.+||+.+++.|+++|++++++++++.|.. +..++.++|+++. T Consensus 327 ~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~i~f~~~~ 406 (468) T protein:vir:96 327 DMLRDYVIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSIKVQDVEITFNFNV 406 (468) T ss_pred HHHHHHHHHHhCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEecCCC Confidence 999999999999999888888889999999999999999999999999999999999999998864 4567999999999 Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH-HHHHHHhhcccccccCCCC Q lcl|Aclame:pro 392 RVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR-EQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 392 ~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~-e~~~~~~~~~~~~~~~~Gs 455 (456) |.|.++.|+++++ +|++|++|+++++|+++|..+++++.+++ ++............+.++| T Consensus 407 p~d~~e~a~~~~~---~g~iS~et~i~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 468 (468) T protein:vir:96 407 MVNELEQSQIGVN---SQYLSKETVVTNHPWVDDPVAEMERIDQEELALPSIEEGLNGKENNEPT 468 (468) T ss_pred CcCHHHHHHHHHh---cCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC Confidence 9999999997654 59999999999999987755555433222 2233344455556667777 No 59 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=100.00 E-value=2.5e-75 Score=429.56 Aligned_cols=438 Identities=13% Similarity=0.019 Sum_probs=327.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) =..+|++++.+.|.+++..+.+||+++++||+|+|++...+.+..+ .+.++|+++||+++||++.++|++|+|++++. T Consensus 12 ~~~~~~~~~~~~i~~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~--~~~~~ki~~n~~~~iv~~~~~~l~g~~~~~~~ 89 (489) T protein:vir:99 12 ESKLWIDQLKNYISRFKAEQLERLKELKRYYLGDNNIKYRPAKTDK--YAADNRIASDFAKYITVFEQGYMLGVPVEYKN 89 (489) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccc--cCCcceeecchHHHHHHHHhhhhccCCceeec Confidence 1256788877776666677889999999999999999877654333 34567899999999999999999999999865 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEe----CCCCceEEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWR----RDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~----~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) ++++....++++|+.|+|+..+.++++.++++|+||+++|. +++|++++++++|++++++||+.....+.+++++ T Consensus 90 -~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~~~v~dd~~~~~~~~~i~~ 168 (489) T protein:vir:99 90 -ENKDLQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQTFVIYDDTYQRNSLMAVHF 168 (489) T ss_pred -CChhHHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccceEEEEcCCCCCceEEEEEE Confidence 34556778999999999999999999999999999999985 5678899999999999999998888889999998 Q ss_pred EEecC---CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec-CCCCCchHHHHHH Q lcl|Aclame:pro 157 WRDLD---AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ-NPDGMGEVEPHID 232 (456) Q Consensus 157 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~-n~~~~s~~~~v~~ 232 (456) |...+ ....++++|+++.+++|...... ...+......+|+++.|||++|. |++|+|+|+++++ T Consensus 169 ~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~g~vPvv~~~n~~~~~s~~~~v~~ 236 (489) T protein:vir:99 169 YDIDYGSGKRKQIIKAYTSDTIYTYEDYNLE------------TKGMRLKDYEGHFFKGVPVNEYANNEERTGAYESVLD 236 (489) T ss_pred EEEecCCCceEEEEEEEeCCcEEEEEecCCC------------cccceecccccccCCceeEEEeecCCCCCCchhhhHH Confidence 86543 33567889999999988653211 12233445678999999999885 5789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhh--hhh----hhhhhhccceeecCC---------Ccce Q lcl|Aclame:pro 233 IINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI--DYA----SIFEAAPGALWELPP---------GVDI 297 (456) Q Consensus 233 liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~--~~~----~~~~~~~~~~~~~~~---------~~~~ 297 (456) |+|+||.++|++++.++++++|+++++|.........+..... ... .......+.++..++ ++++ T Consensus 237 liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (489) T protein:vir:99 237 NIDAYDLSQSELANFQQDSVNALLVIAGNAYTGADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYF 316 (489) T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccchhhhhhcccccccccccccccccceeeeeccccCccccccceee Confidence 9999999999999999999999999999754322111100000 000 001111222333222 2222 Q ss_pred eeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 298 WESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE 377 (456) Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~ 377 (456) .. .+.+.+.+...++.+.+.|+..+++|+..+.++++|+||+||+++++++.+||+.+++.|+.+|++++++++++.+. T Consensus 317 l~-~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~ 395 (489) T protein:vir:99 317 LK-KEYDTAGSEAYKNRLVADILRFTFTPDTQDMKFSGVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAI 395 (489) T ss_pred ee-ecCChHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 22 23456677788889999999999999888887888999999999999999999999999999999999999876542 Q ss_pred ---C-----ccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhh--ccc Q lcl|Aclame:pro 378 ---S-----VEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAG--NPV 447 (456) Q Consensus 378 ---~-----~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~--~~~ 447 (456) . ...+++++|+++.|.|.++.+++++||. |++|++|++++++++.++..+.|.+|.+++...... .+. T Consensus 396 ~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~--giis~et~~~~l~~v~~~d~~~E~~ri~~E~~~~~~~~~~~ 473 (489) T protein:vir:99 396 KGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLY--GIVSDQTIFEILNTVTGVDAEAELKRLKEEADKKQSLPEPR 473 (489) T ss_pred cCCccccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhcccccc Confidence 1 1246899999999999999999999884 899999999999887543333333333222111111 111 Q ss_pred ccccCCCCC Q lcl|Aclame:pro 448 QRPQEDGSR 456 (456) Q Consensus 448 ~~~~~~Gs~ 456 (456) ..++.+|-. T Consensus 474 ~~~~~~~~~ 482 (489) T protein:vir:99 474 LVGDASGQE 482 (489) T ss_pred ccCCCCCCc Confidence 111111111 No 60 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=100.00 E-value=1.7e-75 Score=430.46 Aligned_cols=439 Identities=11% Similarity=0.035 Sum_probs=329.9 Q ss_pred CCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCcccccCcccch------hhhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDD-GMSRVRLLARYSNGDAPLPELTRNTSA------AWRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~-~~~~~~~~~~YY~g~~~i~~~~~~~~~------~~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) .-..+..++.+.+.+.... +.++|+++++||+|+|++++.+..... ...+.++|+++||+++||++.++|++| T Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~Ivd~~~~~l~g 95 (479) T protein:vir:79 16 LKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVG 95 (479) T ss_pred cccCChhHHHHHHHHHHhhhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhc Confidence 2234445555555444433 568899999999999999876543322 223567789999999999999999999 Q ss_pred CCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEE Q lcl|Aclame:pro 74 NGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAA 153 (456) Q Consensus 74 ~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) +|++++.++ +....+++.|..|+|+..+.++++.++++|++|+++|.+++|++++++++|++++|+||+....++.++ T Consensus 96 ~p~~~~~~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~~~~~v~d~~~~~~~~~~ 173 (479) T protein:vir:79 96 NPIVFNADD--DNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIPAEEAIPIWDSKRQRELVAF 173 (479) T ss_pred CCceeccCC--HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEccceeEEEEeCCCCCceEEE Confidence 999996543 345567788888999999999999999999999999999999999999999999999998888889999 Q ss_pred EEEEEecC---CceeEEEEEeCCeEEEEEEccccccccc----ceeeccCCCcccccccccccCceeEEEEe-cCCCCCc Q lcl|Aclame:pro 154 MRWWRDLD---AESDFAIVWSGDGWQKFARPCFVQSSSR----RRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMG 225 (456) Q Consensus 154 i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s 225 (456) +|+|...+ ....++++|+++.+++|......+.... ..........+......+|.+++|||+++ +|++|.| T Consensus 174 ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~s 253 (479) T protein:vir:79 174 IRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVS 253 (479) T ss_pred EEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEecCCCCCCc Confidence 99987543 2356788999999999876543332111 11111222344455667899999999888 5678999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCc--ceeecccc Q lcl|Aclame:pro 226 EVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGV--DIWESQAN 303 (456) Q Consensus 226 ~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 303 (456) +|+++++|+|+||.++|++++.++++++|+++++|...... ++.... ...+.++..++++ ++.+. +. T Consensus 254 d~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~--~~~~~~--------~~~~~~i~~~~~~~~~~l~~-~~ 322 (479) T protein:vir:79 254 DLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSL--QEFIDN--------IRYYKSIKVDGGGGVDKLEI-NI 322 (479) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcccc--ccchhh--------hhhccceecCCCCcceEEec-cC Confidence 99999999999999999999999999999999999643221 111111 1123334444444 44443 34 Q ss_pred chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----C Q lcl|Aclame:pro 304 DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-----S 378 (456) Q Consensus 304 ~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-----~ 378 (456) +.+.+.+.++.+..+|+..+++|...++++ +|+||+|++++++++.++|+.+++.|+.+|++++++++++.+. . T Consensus 323 ~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~ 401 (479) T protein:vir:79 323 PVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSY 401 (479) T ss_pred CHHHHHHHHHHHHHHHHHHhCccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc Confidence 667888889999999999999998887764 7899999999999999999999999999999999999876442 3 Q ss_pred ccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcc---cccccCCCC Q lcl|Aclame:pro 379 VEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNP---VQRPQEDGS 455 (456) Q Consensus 379 ~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~---~~~~~~~Gs 455 (456) +..+++++|+++.|.|+++.|++++|| +|++|.+|+++++|++++..+++++.+++++........ ...+..+=| T Consensus 402 ~~~~i~i~f~~~~p~~~~~~a~~~~kl--~g~iS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~e~ 479 (479) T protein:vir:79 402 DYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) T ss_pred ccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhccCcccCCCcCcC Confidence 445789999999999999999999987 489999999999999887555554333222111111111 111111222 No 61 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=100.00 E-value=9.7e-75 Score=426.34 Aligned_cols=442 Identities=11% Similarity=0.033 Sum_probs=312.2 Q ss_pred CCC-------CCHHHHHHH-HHHHH-HHHHHHHHHHHHHhhccCcccccCcccc-------hhhhhhhhhhcCChHHHHH Q lcl|Aclame:pro 1 MTA-------STPAEWLPV-LTKRI-DDGMSRVRLLARYSNGDAPLPELTRNTS-------AAWRSFQREARTNWGLMVR 64 (456) Q Consensus 1 ~~~-------~t~~~~~~~-l~~~~-~~~~~~~~~~~~YY~g~~~i~~~~~~~~-------~~~~~~~~k~~~n~~~~iV 64 (456) ||+ +...++++. ++.++ ..+++++.++++||+|+|+|...+.... ....+.++|+++||+++|| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Iv 80 (537) T protein:vir:78 1 MTSPLLNKPIDQLGGLLNTEITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFTELV 80 (537) T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccccccccccccccccccccccccchHHHHH Confidence 442 333445544 44443 4678999999999999999986654322 1223467899999999999 Q ss_pred HHHHHhhhcCCcccCCCcc--ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEe Q lcl|Aclame:pro 65 DSVADRIIPNGITVGGSAD--SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSV 142 (456) Q Consensus 65 d~~~~~l~g~~~~~~~~~d--~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~ 142 (456) ++.++||+|+|++++..++ ++....+.++ ..|+++....+++++++++|+||+++|.+++|+++++.++|+++||+| T Consensus 81 d~~~~yl~G~Pv~~~~~d~~~~e~~~~l~~~-~~~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~~~~i~p~~~~pv~ 159 (537) T protein:vir:78 81 DQLAQYLLSNGVEVKVKDEDNTQLDEILQEY-FDEDFQATIDTLVTNASKKGFEGIFARTTSEGKLKFQTVDGLTLIPVF 159 (537) T ss_pred HHHhhhhcccCceeecCcchhHHHHHHHHHH-hhccHHHHHHHHHHHHhhcCeeEEEeeecCCCceEEEEEccceeEEEE Confidence 9999999999999975432 2233334444 458999999999999999999999999999999999999999999999 Q ss_pred eCCCCceeEEEEEEEEecC--------CceeEEEEEeCCeEEEEEEcccccccccce--ee---------------ccCC Q lcl|Aclame:pro 143 DPLQPWRIRAAMRWWRDLD--------AESDFAIVWSGDGWQKFARPCFVQSSSRRR--LV---------------TRIS 197 (456) Q Consensus 143 d~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------~~~~ 197 (456) |+. .++.+++++|.... ....++.+|+++.+++|............. .+ .... T Consensus 160 d~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 237 (537) T protein:vir:78 160 DDY--GVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADF 237 (537) T ss_pred cCC--CCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeeccccccccc Confidence 975 35777778775321 234678899999999987654432211100 00 0001 Q ss_pred CcccccccccccCceeEEEEe-cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhh Q lcl|Aclame:pro 198 DSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAID 276 (456) Q Consensus 198 ~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~ 276 (456) .........+|+|+.+||+.| +|.+|+|+|+++++|||+||.++|++++.+++|++|+++++|..... .++....+ T Consensus 238 ~~~~~~~~~~~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~g~~~~~--~~~~~~~l- 314 (537) T protein:vir:78 238 EDTDGYQVLGRSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVKGFSGDS--TDKLRQNI- 314 (537) T ss_pred cccccccccccCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeeecCCCcc--chhHHHHH- Confidence 112233445788898888877 67889999999999999999999999999999999999999975421 11111111 Q ss_pred hhhhhhhhccceeecC--CCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 277 YASIFEAAPGALWELP--PGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCE 354 (456) Q Consensus 277 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~ 354 (456) . ..+.+...+ .++++... +.+.+.....++.|.+.|+..+.+|+... .++||+||+||++++++|.+||+ T Consensus 315 -----~-~~~~i~v~~d~~~v~~l~~-~~~~~~~e~~ld~L~~~I~~~s~~~~~~~-~~~gn~SGvAlk~~~~~l~~ka~ 386 (537) T protein:vir:78 315 -----K-AKKMIGVNGDNAGMEIQTV-SIPYEARKAKMDIDVENIYRSGMGFNSTA-VGDGNVTNVVIKSRYTLLAMKAR 386 (537) T ss_pred -----h-hcCceeecCCCCceeEEEe-cCCHHHHHHHHHHHHHHHHHhcCCCCCcc-ccccCCcHHHHHHHHhhHHHHHH Confidence 1 122222222 33444332 34556677778888888888888887544 35689999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-----CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH-H Q lcl|Aclame:pro 355 DRLSIAKIGLEAILVKALQIEG-----ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI-K 428 (456) Q Consensus 355 ~~~~~f~~~l~~~~~l~~~~~g-----~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~-~ 428 (456) .+++.|+++|++++++++++.+ ..+..+++++|+++.|.|+++.|+++++|.++|++|.+|+++++|++++.. + T Consensus 387 ~ke~~f~~~l~~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~p~vdd~e~e 466 (537) T protein:vir:78 387 KMETSLRKVLRWCADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATTRKTEAETEALKIGNIMTVAPRIGDDETL 466 (537) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHHHHHHHhcCcchHHHHHHhCCCCCCHHHH Confidence 9999999999999999987643 234567899999999999999999999999999999999999999998742 1 Q ss_pred HHHHHHHHH---H-HHHHhhcccc--------cccCCCCC Q lcl|Aclame:pro 429 QDDLDRARE---Q-ITLFAGNPVQ--------RPQEDGSR 456 (456) Q Consensus 429 ~~e~~~~~e---~-~~~~~~~~~~--------~~~~~Gs~ 456 (456) +++.+..+. . .....+...+ ++..+|.. T Consensus 467 k~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (537) T protein:vir:78 467 KLIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLP 506 (537) T ss_pred HHHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCC Confidence 211111110 0 1111111111 11111111 No 62 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=100.00 E-value=1.2e-55 Score=321.67 Aligned_cols=449 Identities=10% Similarity=0.044 Sum_probs=286.1 Q ss_pred CC------------CCCHHHHHHHHHHH-----HHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHH Q lcl|Aclame:pro 1 MT------------ASTPAEWLPVLTKR-----IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMV 63 (456) Q Consensus 1 ~~------------~~t~~~~~~~l~~~-----~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~i 63 (456) |. .+-...-++.++++ +.....++.++++||+|+|++...............+++++|||+.| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~k~i 80 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVT 80 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccccceeecchHHHH Confidence 11 00001112222221 34455788999999999998764433322222233456889999999 Q ss_pred HHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEee Q lcl|Aclame:pro 64 RDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVD 143 (456) Q Consensus 64 Vd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d 143 (456) |+..++|++|+|++++.+ ++...+.|+++++.|+|...+.+++..++++|.+|+++|.|++|.+++.+++|.+++|+|+ T Consensus 81 ~~~~a~~l~~~p~~i~~~-d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~~~~~~P~~~ 159 (496) T protein:vir:38 81 AKYMSKLLFNEKVKINID-DKAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCMYPLSN 159 (496) T ss_pred HHHHhhhhhCCcceEeeC-ChHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEEEEEEcccceEEEEe Confidence 999999999999998654 4456777899999999999999999999999999999999999999999999999999998 Q ss_pred CCCCceeEEEEEEEEecCCceeEEEEEeC-CeEEEEEEcccccc--cccceeecc--CCCcccccccccccCceeEEEEe Q lcl|Aclame:pro 144 PLQPWRIRAAMRWWRDLDAESDFAIVWSG-DGWQKFARPCFVQS--SSRRRLVTR--ISDSWVPVGDAVVTGSPPPVVVY 218 (456) Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~pv~~~ 218 (456) +..+-...+++..+...+...+.+..|+. +..++.....+... ......++. ...... ....-+.+.+||++++ T Consensus 160 ~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~f~~~ 238 (496) T protein:vir:38 160 DSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIE-PVVPLPDFTRPTFIYI 238 (496) T ss_pred cCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccc-cceeecCCCcceEEEe Confidence 76543444444444432222222222221 11111111111100 000111110 011111 1112244678899887 Q ss_pred cC----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhh-hhhhccc Q lcl|Aclame:pro 219 QN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASI-FEAAPGA 287 (456) Q Consensus 219 ~n----------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~-~~~~~~~ 287 (456) .| +.|.|+|+.+++++|+||.++|++++.++....+ .++ ....-....+..|........ ....... T Consensus 239 ~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~-i~v-~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 316 (496) T protein:vir:38 239 KPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKK-VLV-PSSFVKTAVNLDGSTTQYFDSTDEAFFLY 316 (496) T ss_pred cCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccc-eec-chHHhhccCCCCCccccCCCCccceEEEe Confidence 43 3589999999999999999999999987752222 111 111000011122221111000 0000000 Q ss_pred eeecCCC-cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 288 LWELPPG-VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKCEDRLSIAKIGL 364 (456) Q Consensus 288 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l 364 (456) .....++ ..+.+++ ....++|++.++.++++|+..+++|+..|+...+ +.||.+++++++.|.+++..+++.|+.+| T Consensus 317 ~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l 396 (496) T protein:vir:38 317 QGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGI 396 (496) T ss_pred ecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1111111 1233332 3345889999999999999999999999986654 45899999999999999999999999999 Q ss_pred HHHHHHHHHhc-------C-CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHH Q lcl|Aclame:pro 365 EAILVKALQIE-------G-ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAR 436 (456) Q Consensus 365 ~~~~~l~~~~~-------g-~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~ 436 (456) +++++.++.+. | ......++++|.++.|.|..++++++++++++|++|.+|++..+++..++.++.+.+|.+ T Consensus 397 ~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~~~~~d~ea~~el~ri~ 476 (496) T protein:vir:38 397 KEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRAWNITEAEADEWAEMLA 476 (496) T ss_pred HHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCChHHHHHHHHHHH Confidence 99988886542 2 234557899999999999999999999999999999999998887666665655555555 Q ss_pred HHHHH-Hhhcc--cccccCC Q lcl|Aclame:pro 437 EQITL-FAGNP--VQRPQED 453 (456) Q Consensus 437 e~~~~-~~~~~--~~~~~~~ 453 (456) ++... +.+.+ ...++++ T Consensus 477 ~E~~~~~~~~d~~~~~~~~e 496 (496) T protein:vir:38 477 KEKQAEMPNNDMNGIFGEEE 496 (496) T ss_pred HhhhccCccccccCCCCCCC Confidence 43321 11111 1111222 No 63 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=100.00 E-value=5.2e-53 Score=307.21 Aligned_cols=449 Identities=10% Similarity=0.068 Sum_probs=285.9 Q ss_pred CCCCCHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKR------------------IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLM 62 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~------------------~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ 62 (456) |..- --.+++.++++ +.....++.++++||+|+|+...............++++++|+++. T Consensus 1 m~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~s~n~~~~ 79 (499) T protein:vir:80 1 MINQ-IIAGVKGVMRRMGLLKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPVNRRQLSMNLPKV 79 (499) T ss_pred ChhH-HHHHHHHHHHHhccccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccccCCCccccceeecchHHH Confidence 2110 01122222221 3345577889999999999865433222222234456788999999 Q ss_pred HHHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEe Q lcl|Aclame:pro 63 VRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSV 142 (456) Q Consensus 63 iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~ 142 (456) ||+++++|++++|++++.+ ++...+.+++++++|+|.....+++..|+.+|.+|+++|.|++|++++..++|.+++|+| T Consensus 80 iv~~~a~~l~~ep~~i~~~-d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~i~~v~a~~~~Pi~ 158 (499) T protein:vir:80 80 TAKYMSKLLFNEKVKINID-DETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVKVSFATADCMYPLS 158 (499) T ss_pred HHHHHHHhhhCCcceEeeC-CHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEEEEEEcCCceEEEE Confidence 9999999999999988654 456677789999999999999999999999999999999999999999999999999997 Q ss_pred eCCCCceeEEEEEEEEecCCceeEEEE--EeCCeE--EEEEEccccccc--ccceeecc--CCCcccccccccccCceeE Q lcl|Aclame:pro 143 DPLQPWRIRAAMRWWRDLDAESDFAIV--WSGDGW--QKFARPCFVQSS--SRRRLVTR--ISDSWVPVGDAVVTGSPPP 214 (456) Q Consensus 143 d~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~p 214 (456) .+..+....+++..+...+...+.+.. |..... |+.....+.... .....++. ..... ......+.+++|| T Consensus 159 ~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~-~~~~~~~~~~~p~ 237 (499) T protein:vir:80 159 NDSENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDI-EPVVPLPSLTRPT 237 (499) T ss_pred ecCCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCc-CCceeecCCCccc Confidence 765444444444444433322222222 222211 111111111000 00111110 00000 1111223568899 Q ss_pred EEEecC----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhh Q lcl|Aclame:pro 215 VVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAA 284 (456) Q Consensus 215 v~~~~n----------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~ 284 (456) +++|+| +.|.|+|+.+++++|+||+.+|++++..+....++.+ ....-....+.+|......+..... T Consensus 238 f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v--~~~~l~~~~~~~g~~~~~~~~~~~~ 315 (499) T protein:vir:80 238 FIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLV--PSSFVKTAVNLDGSTTQYFDSTDEA 315 (499) T ss_pred eEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhcccceec--chhhhhccCCCCCCcccCCCcccce Confidence 998854 3488999999999999999999999988764333222 1111001112222211110100000 Q ss_pred ccceeecCCCc--ceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccc-cchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 285 PGALWELPPGV--DIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKCEDRLSIA 360 (456) Q Consensus 285 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~~~~~f 360 (456) ...+...++++ .+..++ ....+++.+.++.++++|....|+++..||...+ +.||.+++++++.+..++..+++.| T Consensus 316 ~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~~l~~~~~~~~~~~ 395 (499) T protein:vir:80 316 FFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLI 395 (499) T ss_pred eeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHH Confidence 11111111221 233332 3455889999999999999999999999986554 4589999999999999999999999 Q ss_pred HHHHHHHHHHHHHhc-------C-CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHH Q lcl|Aclame:pro 361 KIGLEAILVKALQIE-------G-ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDL 432 (456) Q Consensus 361 ~~~l~~~~~l~~~~~-------g-~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~ 432 (456) +.+|+++++.++.+. | ......+.+.|.+..+.|..++++++++++++|++|.+|++..+.+.+++.++.+. T Consensus 396 ~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~~~~~~~d~ea~~el 475 (499) T protein:vir:80 396 EQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQRAWNITEAEADEWA 475 (499) T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhcCCCChHHHHHHH Confidence 999999998887531 2 23456799999999999999999999999999999999999877665555555554 Q ss_pred HHHHHHHHHHhhcccccc-cCCCCC Q lcl|Aclame:pro 433 DRAREQITLFAGNPVQRP-QEDGSR 456 (456) Q Consensus 433 ~~~~e~~~~~~~~~~~~~-~~~Gs~ 456 (456) ++.+++... ..+.+++ +..|-- T Consensus 476 ~~i~~E~~~--~~~~~d~~g~~ge~ 498 (499) T protein:vir:80 476 EMLAKEKQA--EIPNNDMTGIFGEE 498 (499) T ss_pred HHHHHHhhc--CCCCCCccccCCCC Confidence 544443221 1111111 111111 No 64 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=100.00 E-value=1.7e-46 Score=271.45 Aligned_cols=440 Identities=10% Similarity=0.084 Sum_probs=276.6 Q ss_pred CCHHHHHHHHHHH----------------------HHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHH Q lcl|Aclame:pro 4 STPAEWLPVLTKR----------------------IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGL 61 (456) Q Consensus 4 ~t~~~~~~~l~~~----------------------~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~ 61 (456) |.-=+-++.++++ -....+|++++++||+|+++..+.... .. .++..+++.+|+|+ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~-~~-~~~~~~~~sln~~~ 78 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQAS-DG-IKKKRLKNTINMAK 78 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccC-CC-CccccceeecchHH Confidence 1111112211111 123456899999999999986533221 11 11223356789999 Q ss_pred HHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEE Q lcl|Aclame:pro 62 MVRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVS 141 (456) Q Consensus 62 ~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i 141 (456) .||+.+|++++++++++..++++..+..|++++++|+|.....+++..++..|.+|+.+|.|. |.++|..++|.+++|+ T Consensus 79 ~i~~~~A~lv~~e~~~i~v~~~~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~~~i~~v~ad~~~P~ 157 (508) T protein:vir:15 79 TAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDG-NHIKIAWVRADQFYPL 157 (508) T ss_pred HHHHHHHhhhhCCCceEEeCCchHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeC-CeeEEEEEcCCeeEEE Confidence 999999999999998887655555566789999999999999999999999999999999984 5689999999999998 Q ss_pred eeCCCCceeEEEEEEE-EecCCceeEEEE---Ee--CCeEEEEEEccccccc--ccceeeccC-CCcccccc--cccccC Q lcl|Aclame:pro 142 VDPLQPWRIRAAMRWW-RDLDAESDFAIV---WS--GDGWQKFARPCFVQSS--SRRRLVTRI-SDSWVPVG--DAVVTG 210 (456) Q Consensus 142 ~d~~~~~~~~~~i~~~-~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~--~~~~~~ 210 (456) ..+..+....++++.+ ...+....++++ |+ .++.++.....+.... .....++.. -..|.... ...+.. T Consensus 158 ~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~ 237 (508) T protein:vir:15 158 QSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGL 237 (508) T ss_pred EEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCcceEecCC Confidence 5444433333333333 222233333332 21 1112221111111110 001111100 01111111 112345 Q ss_pred ceeEEEEecC----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhh Q lcl|Aclame:pro 211 SPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASI 280 (456) Q Consensus 211 ~~~pv~~~~n----------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~ 280 (456) .+||+++|.| +.|.|+|+.+++++|++|.+.|++++..+ .+.+..++.-. ....+++|.+. T Consensus 238 ~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~---~l~~d~~~~~~----- 308 (508) T protein:vir:15 238 QRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPG---MLRFDDEHKPT----- 308 (508) T ss_pred CcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHH-hcccceeechH---HhcCCCCCccc----- Confidence 6788888743 35899999999999999999999999886 33333333110 11123333221 Q ss_pred hhhhcccee--ec--CCCcceeeccc-cchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 281 FEAAPGALW--EL--PPGVDIWESQA-NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCE 354 (456) Q Consensus 281 ~~~~~~~~~--~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~ 354 (456) +........ .. +.+..+.++++ ...++|.+.++.+++.|....|+++..|+...++ .||.+++.+++.+.++++ T Consensus 309 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~~~~~~t~~ 388 (508) T protein:vir:15 309 FDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRS 388 (508) T ss_pred cCCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCccccHHHHHHHHHHHHHHHH Confidence 111111111 11 12233444443 3567899999999999999999999999866544 599999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhcC----------------CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH Q lcl|Aclame:pro 355 DRLSIAKIGLEAILVKALQIEG----------------ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRN 418 (456) Q Consensus 355 ~~~~~f~~~l~~~~~l~~~~~g----------------~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~ 418 (456) .+++.|+.+|+++++.++.+.. .....+++|.|.+..++|..++++..++++++|++|.++++. T Consensus 389 ~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi~s~e~~i~ 468 (508) T protein:vir:15 389 SYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQ 468 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHH Confidence 9999999999999988865421 123456889999999999999999999999999999999987 Q ss_pred hC-CCCccHHHHHHHHHHH-HHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 419 IL-NYNADQIKQDDLDRAR-EQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 419 ~~-~~~~~~~~~~e~~~~~-e~~~~~~~~~~~~~~~~Gs~ 456 (456) .+ |+++++. +.+.+|.+ |+...........|.++|.= T Consensus 469 ~~~g~~deea-~~el~ri~~E~~~~~~~~~~~~~~~g~~g 507 (508) T protein:vir:15 469 RNYGMTDEQA-AEELAKIQSEAPTDTFEGGRSAILNGGDG 507 (508) T ss_pred hcCCCChHHH-HHHHHHHHHhccccCccccccccCCCCCC Confidence 66 6665443 33333333 33221111111122222222 No 65 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=100.00 E-value=1.9e-44 Score=260.29 Aligned_cols=442 Identities=12% Similarity=0.073 Sum_probs=274.4 Q ss_pred CCC-CCHHHHHHHHHHH-----HHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MTA-STPAEWLPVLTKR-----IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~~-~t~~~~~~~l~~~-----~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) |.+ ++...-++.+.++ -.....++++.++||+|+++....... .. ....+++..+|+++.||+.+|++++++ T Consensus 14 ~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~~~l~~~~~-~~-~~~~~~~~slnl~~~i~~~~A~ll~~e 91 (505) T protein:vir:79 14 GSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDFKQVTHKNS-YG-DTQKHELQSVNVTKLASAKLASLIFNE 91 (505) T ss_pred hhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCCcccccccc-CC-CccccceeecchHHHHHHHHHhhhcCC Confidence 211 1111112222211 022446678889999999985432211 11 122334577899999999999999999 Q ss_pred CcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 75 GITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 75 ~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) |++++.+ ++..++.|++++++|+|.....+++..++..|.+++.+|.| .|.++|..++|.+++|++.+..+....+++ T Consensus 92 ~~~i~~~-d~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D-~~~~~i~~v~ad~~~P~~~d~~~~~~~a~~ 169 (505) T protein:vir:79 92 QCQVTVS-DETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVD-SGKIKLAWATADQVYPLQADTNQVNELAIA 169 (505) T ss_pred CceeecC-ChHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEe-CCceEEEEEcCCeeEEEEEcCCCeEEEEEE Confidence 9887654 45567789999999999999999999999999999999997 577999999999999996544444444444 Q ss_pred EEEEecC-CceeEE---EEEeCC-eEEEEEEccccc--ccccceeeccCC-Cccccc--ccccccCceeEEEEecC---- Q lcl|Aclame:pro 155 RWWRDLD-AESDFA---IVWSGD-GWQKFARPCFVQ--SSSRRRLVTRIS-DSWVPV--GDAVVTGSPPPVVVYQN---- 220 (456) Q Consensus 155 ~~~~~~~-~~~~~~---~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~pv~~~~n---- 220 (456) ..|...+ ....++ ..|+.+ ..++.....+.. .......++... ..|.-. ......+.+|++++|.| T Consensus 170 ~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N 249 (505) T protein:vir:79 170 SRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEPQVKITGLKHPLFAFYRNKGAN 249 (505) T ss_pred EEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCcceeecCCCcceEEEecCCccc Confidence 4444332 222222 223211 111111111110 000011111000 011111 11123467888888743 Q ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh----hc-CCCccccccccchhhhhhhhhhhhhccc-- Q lcl|Aclame:pro 221 ------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRA----LK-STEHGLPNVDENGNAIDYASIFEAAPGA-- 287 (456) Q Consensus 221 ------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~----i~-G~~~~~~~~d~~g~~~~~~~~~~~~~~~-- 287 (456) +.|.|+|+.+++++|++|.+.|++++..+....++.+ +. ....... ....+.+ .+...... T Consensus 250 ~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~-~~~~~~~-----~fd~~~~~y~ 323 (505) T protein:vir:79 250 NKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVPAEWLKTGSSYGGQ-ASETHPP-----MFDPDETVYQ 323 (505) T ss_pred ccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcccCCCCcc-ccccccc-----CCCccceeee Confidence 3589999999999999999999999988753322111 11 0000000 0000111 11111110 Q ss_pred -eeecCCCcceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 288 -LWELPPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGL 364 (456) Q Consensus 288 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l 364 (456) +...+.+..+..++ ....+.|.+.++.++++|+..++++...|+...++ .||.+++.+++.+..+++.+++.|+.+| T Consensus 324 ~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~s~~~~l~~t~~~~~~~~~~al 403 (505) T protein:vir:79 324 AMYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQTATEVVTNNSQTYQTRSSYITQVEKTI 403 (505) T ss_pred eccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccchHHHHHHHHhHHHHHHHHHHHHHHHHH Confidence 11111222333333 23457899999999999999999999999865543 5899999999999999999999999999 Q ss_pred HHHHHHHHHhc--------------CCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHH Q lcl|Aclame:pro 365 EAILVKALQIE--------------GESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD 430 (456) Q Consensus 365 ~~~~~l~~~~~--------------g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~ 430 (456) +++++.++.+. +......+.|.|.+..++|..++++..++++++|++|.++++..+....++.++. T Consensus 404 ~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~Gi~s~e~~l~~~~~~~eeea~~ 483 (505) T protein:vir:79 404 KALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQAQVMPKKQFLMRNYGLDEEEADE 483 (505) T ss_pred HHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcCCCChHHHHH Confidence 99999887542 2233457889999999999999999999999999999999988765444444544 Q ss_pred HHHHHHHHHHHHhhcccccccCC Q lcl|Aclame:pro 431 DLDRAREQITLFAGNPVQRPQED 453 (456) Q Consensus 431 e~~~~~e~~~~~~~~~~~~~~~~ 453 (456) +.+|.+++.... .....+-+.| T Consensus 484 el~ri~~E~~~~-~p~~~~~gg~ 505 (505) T protein:vir:79 484 WLAQIDAENSTA-EPEFNQFGGD 505 (505) T ss_pred HHHHHHHhcccc-CCCchhccCC Confidence 555554442211 1111112222 No 66 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=100.00 E-value=7.2e-43 Score=251.62 Aligned_cols=441 Identities=10% Similarity=0.078 Sum_probs=277.6 Q ss_pred CCHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHH Q lcl|Aclame:pro 4 STPAEWLPVLTKR---------------------IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLM 62 (456) Q Consensus 4 ~t~~~~~~~l~~~---------------------~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ 62 (456) |.-=+.|+.++++ -.....+++++++||+|+++........ +.. ...++.++|+++. T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~-~~~~~~slnl~~~ 78 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTD-GET-KKRDLNHLPIART 78 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCC-CCc-ccCceeecchHHH Confidence 2222222222211 1234578899999999997643221111 111 2234577899999 Q ss_pred HHHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEe Q lcl|Aclame:pro 63 VRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSV 142 (456) Q Consensus 63 iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~ 142 (456) ||+.+++++++++.++..+ ++...+.++++++.|+|.....+++..++..|.+|+.+|.+ .+.++|..++|.+++|+. T Consensus 79 i~~~~A~lv~~e~~~i~~~-d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d-~~~~~I~~v~ad~~~P~~ 156 (500) T protein:vir:98 79 AAKKIASLVFNEQAEIKVD-DDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVD-GDKVRVAFVQAPVFLPLQ 156 (500) T ss_pred HHHHHhhhhcCCcceEecC-ChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEe-CCceEEEEEcCCeeEEEE Confidence 9999999999999887654 44567789999999999999999999999999999999997 467999999999999987 Q ss_pred eCCCCceeEEEEEE-EEecCCceeEEEE-----EeCCeEEEEEEcccccc--cccceeeccCCCccccc--ccccccCce Q lcl|Aclame:pro 143 DPLQPWRIRAAMRW-WRDLDAESDFAIV-----WSGDGWQKFARPCFVQS--SSRRRLVTRISDSWVPV--GDAVVTGSP 212 (456) Q Consensus 143 d~~~~~~~~~~i~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~ 212 (456) .+..+....+++.. +...++...++++ |..+..++.....+... ......++.. ..|... ........+ T Consensus 157 ~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~-~~~~~l~~~~~~~~~~~ 235 (500) T protein:vir:98 157 SNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLS-EVYKDLKDEAKVTDVTR 235 (500) T ss_pred EcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccc-cccCCcCcceEeccCCC Confidence 66665555554443 3333344333332 22232222211111110 0001111110 001111 111234567 Q ss_pred eEEEEecC----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc---cchhhhhhhh Q lcl|Aclame:pro 213 PPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD---ENGNAIDYAS 279 (456) Q Consensus 213 ~pv~~~~n----------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d---~~g~~~~~~~ 279 (456) |++.+|.+ +.|.|+|+.+++++|++|...|++++..+....+ .++. . .....+ .+|... ... T Consensus 236 p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~-i~v~-~--~~l~~~~~~~~g~~~-~~~ 310 (500) T protein:vir:98 236 PIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRR-VAVP-E--SLTALTVRTTDGDVV-PRP 310 (500) T ss_pred ccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcce-eeec-h--HHhcccCCCCCcccc-CCc Confidence 88888732 3588999999999999999999999987752222 1211 0 011111 111111 111 Q ss_pred hhhhhccceee--cCCC--cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHH Q lcl|Aclame:pro 280 IFEAAPGALWE--LPPG--VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKC 353 (456) Q Consensus 280 ~~~~~~~~~~~--~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~ 353 (456) .+......... .+++ ..+..++ ....+.|.+.++.++++|....++++..|+...++ .||.+++++++.+.+++ T Consensus 311 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~ 390 (500) T protein:vir:98 311 RFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMR 390 (500) T ss_pred ccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHH Confidence 12211111111 1112 2244443 23457899999999999999999999999866544 58999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-------C-CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH-hCCCCc Q lcl|Aclame:pro 354 EDRLSIAKIGLEAILVKALQIE-------G-ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRN-ILNYNA 424 (456) Q Consensus 354 ~~~~~~f~~~l~~~~~l~~~~~-------g-~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~-~~~~~~ 424 (456) +.+++.|+.+|+++++.++.+. + .....++.|.|.+..++|..++++..++++++|++|.++++. ..|+++ T Consensus 391 ~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~~g~~e 470 (500) T protein:vir:98 391 NSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKVLNVTE 470 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcCCCCH Confidence 9999999999999999887542 1 234567899999999999999999999999999999999875 558887 Q ss_pred cHHHHHHHHHHHHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 425 DQIKQDDLDRAREQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 425 ~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs 455 (456) ++.+++.++.++|+... .+.+.+..+.-|= T Consensus 471 eea~~~l~~i~~E~~~~-~~~~~~~~~~~g~ 500 (500) T protein:vir:98 471 EKAQEIAAEINTGIVDE-INQQRTDTHLYGE 500 (500) T ss_pred HHHHHHHHHHHHhcccc-CCCCCccccccCC Confidence 65555433333332211 1111111111111 No 67 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=100.00 E-value=7.2e-43 Score=251.62 Aligned_cols=441 Identities=10% Similarity=0.078 Sum_probs=277.6 Q ss_pred CCHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHH Q lcl|Aclame:pro 4 STPAEWLPVLTKR---------------------IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLM 62 (456) Q Consensus 4 ~t~~~~~~~l~~~---------------------~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ 62 (456) |.-=+.|+.++++ -.....+++++++||+|+++........ +.. ...++.++|+++. T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~-~~~-~~~~~~slnl~~~ 78 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTD-GET-KKRDLNHLPIART 78 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCC-CCc-ccCceeecchHHH Confidence 2222222222211 1234578899999999997643221111 111 2234577899999 Q ss_pred HHHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEe Q lcl|Aclame:pro 63 VRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSV 142 (456) Q Consensus 63 iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~ 142 (456) ||+.+++++++++.++..+ ++...+.++++++.|+|.....+++..++..|.+|+.+|.+ .+.++|..++|.+++|+. T Consensus 79 i~~~~A~lv~~e~~~i~~~-d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d-~~~~~I~~v~ad~~~P~~ 156 (500) T protein:vir:30 79 AAKKIASLVFNEQAEIKVD-DDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVD-GDKVRVAFVQAPVFLPLQ 156 (500) T ss_pred HHHHHhhhhcCCcceEecC-ChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEe-CCceEEEEEcCCeeEEEE Confidence 9999999999999887654 44567789999999999999999999999999999999997 467999999999999987 Q ss_pred eCCCCceeEEEEEE-EEecCCceeEEEE-----EeCCeEEEEEEcccccc--cccceeeccCCCccccc--ccccccCce Q lcl|Aclame:pro 143 DPLQPWRIRAAMRW-WRDLDAESDFAIV-----WSGDGWQKFARPCFVQS--SSRRRLVTRISDSWVPV--GDAVVTGSP 212 (456) Q Consensus 143 d~~~~~~~~~~i~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~ 212 (456) .+..+....+++.. +...++...++++ |..+..++.....+... ......++.. ..|... ........+ T Consensus 157 ~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~-~~~~~l~~~~~~~~~~~ 235 (500) T protein:vir:30 157 SNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLS-EVYKDLKDEAKVTDVTR 235 (500) T ss_pred EcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccc-cccCCcCcceEeccCCC Confidence 66665555554443 3333344333332 22232222211111110 0001111110 001111 111234567 Q ss_pred eEEEEecC----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc---cchhhhhhhh Q lcl|Aclame:pro 213 PPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD---ENGNAIDYAS 279 (456) Q Consensus 213 ~pv~~~~n----------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d---~~g~~~~~~~ 279 (456) |++.+|.+ +.|.|+|+.+++++|++|...|++++..+....+ .++. . .....+ .+|... ... T Consensus 236 p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~-i~v~-~--~~l~~~~~~~~g~~~-~~~ 310 (500) T protein:vir:30 236 PIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRR-VAVP-E--SLTALTVRTTDGDVV-PRP 310 (500) T ss_pred ccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcce-eeec-h--HHhcccCCCCCcccc-CCc Confidence 88888732 3588999999999999999999999987752222 1211 0 011111 111111 111 Q ss_pred hhhhhccceee--cCCC--cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHH Q lcl|Aclame:pro 280 IFEAAPGALWE--LPPG--VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKC 353 (456) Q Consensus 280 ~~~~~~~~~~~--~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~ 353 (456) .+......... .+++ ..+..++ ....+.|.+.++.++++|....++++..|+...++ .||.+++++++.+.+++ T Consensus 311 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~~~t~ 390 (500) T protein:vir:30 311 RFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDTYQMR 390 (500) T ss_pred ccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHHHHHH Confidence 12211111111 1112 2244443 23457899999999999999999999999866544 58999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-------C-CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH-hCCCCc Q lcl|Aclame:pro 354 EDRLSIAKIGLEAILVKALQIE-------G-ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRN-ILNYNA 424 (456) Q Consensus 354 ~~~~~~f~~~l~~~~~l~~~~~-------g-~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~-~~~~~~ 424 (456) +.+++.|+.+|+++++.++.+. + .....++.|.|.+..++|..++++..++++++|++|.++++. ..|+++ T Consensus 391 ~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~~g~~e 470 (500) T protein:vir:30 391 NSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKVLNVTE 470 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcCCCCH Confidence 9999999999999999887542 1 234567899999999999999999999999999999999875 558887 Q ss_pred cHHHHHHHHHHHHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 425 DQIKQDDLDRAREQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 425 ~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs 455 (456) ++.+++.++.++|+... .+.+.+..+.-|= T Consensus 471 eea~~~l~~i~~E~~~~-~~~~~~~~~~~g~ 500 (500) T protein:vir:30 471 EKAQEIAAEINTGIVDE-INQQRTDTHLYGE 500 (500) T ss_pred HHHHHHHHHHHHhcccc-CCCCCccccccCC Confidence 65555433333332211 1111111111111 No 68 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=100.00 E-value=1.4e-43 Score=255.46 Aligned_cols=434 Identities=13% Similarity=0.063 Sum_probs=294.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) |-+. +-.+-+.++.+|+.+.+||.|.+.-......-.+. ...+.+..+..+++|+....+ .+.|..+.. T Consensus 21 ~p~~--------v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~--~~~r~~~~ps~~~~~~~~~~~-~~~g~~~~~ 89 (527) T protein:vir:10 21 FPNA--------VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE--GDQRPIYVPNGEKLIEAKMRF-LGQGLKWEF 89 (527) T ss_pred Cccc--------CCHHHHHHHHHHHHHHHHhcCchhheeeecCCccc--cccceeeehhhHHhhCCccee-eccCccccc Confidence 3222 22344568889999999999987543322111111 122346777888888877654 456665432 Q ss_pred -CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCee-EEEEEeCC---CCceEEEEEccceEEEEeeCCCCceeEEEEE Q lcl|Aclame:pro 81 -SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGES-YLTCWRRD---DGTATITADSPETMVVSVDPLQPWRIRAAMR 155 (456) Q Consensus 81 -~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a-~~~v~~~~---~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) ..++.....+..++++|++..++.+..+++.+-|.+ |.+.|-.. .++++++.++|.+.|++.||...+.+..+.. T Consensus 90 ~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~DP~~~f~~ed~d~~~~v~~v~~ 169 (527) T protein:vir:10 90 SKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYL 169 (527) T ss_pred cchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeecCcceeeeeecCCCCCceeeEEE Confidence 334556667778889999999999999999999986 55666543 3579999999999999999877776666532 Q ss_pred E--EEecCCceeEEE-------EE--------eCCeEEEEEEc-c--cccccccceeeccC------CCccccccccccc Q lcl|Aclame:pro 156 W--WRDLDAESDFAI-------VW--------SGDGWQKFARP-C--FVQSSSRRRLVTRI------SDSWVPVGDAVVT 209 (456) Q Consensus 156 ~--~~~~~~~~~~~~-------~~--------~~~~~~~~~~~-~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 209 (456) . |...+....-+. .| ++.+-..+... + ..|++. ...+.. ..........++. T Consensus 170 ~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~--~e~p~~~~~~~~~~~~~~l~~lp~p 247 (527) T protein:vir:10 170 VDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR--PESPLEPDDIKKLSTLTEEEPLPEQ 247 (527) T ss_pred eeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc--cccccchhhhhhhcCceeeecccCC Confidence 2 443332221000 00 11111111100 0 011110 000100 1123345567889 Q ss_pred CceeEEEEecC------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhh Q lcl|Aclame:pro 210 GSPPPVVVYQN------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA 283 (456) Q Consensus 210 ~~~~pv~~~~n------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~ 283 (456) ++++|||+|+| .+|+|+++++++++|++|+++|+...++.+.+.|+.+++|.... +..|+. ..+.. T Consensus 248 i~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~v----d~~G~~----~~~~V 319 (527) T protein:vir:10 248 ITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR----DSRGNM----VPWTI 319 (527) T ss_pred CCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeecccccc----cccCCc----Ccccc Confidence 99999999976 37999999999999999999999999999999999999987643 334433 34677 Q ss_pred hccceeecCCCcceeeccc-cchHHHHHHHHHHHHHHHhhcCCChhhhc--cccccchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 284 APGALWELPPGVDIWESQA-NDFTPMLSAIKEHIRQLSSATKTPLPMLM--PDSANQSAEGAHNIEKGFLFKCEDRLSIA 360 (456) Q Consensus 284 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~t~~p~~~~~--~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f 360 (456) ++|.+|.+++++++..++. .++++|.+++..+...||.++++|...+| ..+.++||.||+..+++|.+++++++..+ T Consensus 320 gPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~ 399 (527) T protein:vir:10 320 SPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELEL 399 (527) T ss_pred CCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHH Confidence 8999999999999988775 57889999999999999999999999999 44556799999999999999999998777 Q ss_pred HHHHHHHHH-----HHHHh-----cCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhC---CCCccH- Q lcl|Aclame:pro 361 KIGLEAILV-----KALQI-----EGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL---NYNADQ- 426 (456) Q Consensus 361 ~~~l~~~~~-----l~~~~-----~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~- 426 (456) +...++..+ .+-+. .+......+.++|.++.|.|.++.++.+++|+++|++|++|++++| ||..+. T Consensus 400 ~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGi~S~~tAv~~L~~~~g~eD~E 479 (527) T protein:vir:10 400 KSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNSEKRFNQLLQLWEAGLIPAKKLTEELSKIMGFELTE 479 (527) T ss_pred HHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCChH Confidence 777665322 11111 2222334789999999999999999999999999999999998877 554442 Q ss_pred --HHHHHHHHHHHHHHHHhhcccc----cccCCCCC Q lcl|Aclame:pro 427 --IKQDDLDRAREQITLFAGNPVQ----RPQEDGSR 456 (456) Q Consensus 427 --~~~~e~~~~~e~~~~~~~~~~~----~~~~~Gs~ 456 (456) .+++.+++..+. .++++..++ ..+..|.- T Consensus 480 ~E~~~I~~era~~a-~a~a~A~~~~~a~~~~~~g~~ 514 (527) T protein:vir:10 480 EDFKQATEDKKTQG-IAQAEAADPFGAQMAAEQGIP 514 (527) T ss_pred HHHHHHHHHHHHHh-HHhhhhcCchhhhhccccCCC Confidence 234443333322 222222211 11222222 No 69 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=100.00 E-value=1.8e-43 Score=254.96 Aligned_cols=434 Identities=13% Similarity=0.063 Sum_probs=294.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) |-+. +-.+-+.++.+|+.+.+||.|.+.-......-.+. ...+.+..+..+++|+....+ .+.|..+.. T Consensus 21 ~p~~--------v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~--~~~r~~~~ps~~~~~~~~~~~-~~~g~~~~~ 89 (527) T protein:vir:10 21 FPNA--------VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE--GDQRPIYVPNGEKLIEAKMRF-LGQGLKWEF 89 (527) T ss_pred Cccc--------CCHHHHHHHHHHHHHHHHhcCchhheeeecCCccc--cccceeeehhhHHhhCCccee-eccCccccc Confidence 3222 22344568889999999999987543322111111 122346777888888876654 456665432 Q ss_pred -CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCee-EEEEEeCC---CCceEEEEEccceEEEEeeCCCCceeEEEEE Q lcl|Aclame:pro 81 -SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGES-YLTCWRRD---DGTATITADSPETMVVSVDPLQPWRIRAAMR 155 (456) Q Consensus 81 -~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a-~~~v~~~~---~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) ..++.....+..++++|++..++.+..+++.+-|.+ |.+.|-.. .++++++.++|.+.|++.||...+.+..+.. T Consensus 90 ~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~DP~~~f~~ed~d~~~~v~~v~~ 169 (527) T protein:vir:10 90 SKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYL 169 (527) T ss_pred cchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeecCcceeeeeecCCCCCceeeEEE Confidence 334556666777888999999999999999999986 55666543 3579999999999999999877776666532 Q ss_pred E--EEecCCceeEEE-------EE--------eCCeEEEEEEc-c--cccccccceeeccC------CCccccccccccc Q lcl|Aclame:pro 156 W--WRDLDAESDFAI-------VW--------SGDGWQKFARP-C--FVQSSSRRRLVTRI------SDSWVPVGDAVVT 209 (456) Q Consensus 156 ~--~~~~~~~~~~~~-------~~--------~~~~~~~~~~~-~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 209 (456) . |...+....-+. .| +..+-..+... + ..|++. ...+.. ..........++. T Consensus 170 ~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~--~e~p~~~~~~~~~~~~~~l~~lp~p 247 (527) T protein:vir:10 170 VDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR--PESPLEPDDIKKLSTLTEEEPLPEQ 247 (527) T ss_pred eeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccc--cccccchhhhhhhcCceeeecccCC Confidence 2 443332221000 00 11111111100 0 011110 000100 1123345567889 Q ss_pred CceeEEEEecC------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhh Q lcl|Aclame:pro 210 GSPPPVVVYQN------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA 283 (456) Q Consensus 210 ~~~~pv~~~~n------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~ 283 (456) ++++|||+|+| .+|+|+++++++++|++|+++|+...++.+.+.|+.+++|.... +..|+. ..+.. T Consensus 248 i~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~v----d~~G~~----~~~~V 319 (527) T protein:vir:10 248 ITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR----DSRGNM----VPWTI 319 (527) T ss_pred CCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeecccccc----cccCCc----Ccccc Confidence 99999999976 37999999999999999999999999999999999999987643 334433 34677 Q ss_pred hccceeecCCCcceeeccc-cchHHHHHHHHHHHHHHHhhcCCChhhhc--cccccchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 284 APGALWELPPGVDIWESQA-NDFTPMLSAIKEHIRQLSSATKTPLPMLM--PDSANQSAEGAHNIEKGFLFKCEDRLSIA 360 (456) Q Consensus 284 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~t~~p~~~~~--~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f 360 (456) ++|.+|.+++++++..++. .++++|.++++.+...||.++++|...+| ..+.++||.||+..+++|.+++++++..+ T Consensus 320 gPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~ 399 (527) T protein:vir:10 320 SPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELEL 399 (527) T ss_pred CCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHH Confidence 8999999999999988775 57889999999999999999999999999 44556799999999999999999998777 Q ss_pred HHHHHHHHH-----HHHHh-----cCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhC---CCCccH- Q lcl|Aclame:pro 361 KIGLEAILV-----KALQI-----EGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL---NYNADQ- 426 (456) Q Consensus 361 ~~~l~~~~~-----l~~~~-----~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~- 426 (456) +...++..+ .+-+. .+......+.++|.++.|.|.++.++.+++|+++|++|++|++++| ||..+. T Consensus 400 ~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGiiS~etAv~~L~~~~g~eD~E 479 (527) T protein:vir:10 400 KSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTE 479 (527) T ss_pred HHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCchH Confidence 777665322 11111 2222334789999999999999999999999999999999998877 554442 Q ss_pred --HHHHHHHHHHHHHHHHhhcccc----cccCCCCC Q lcl|Aclame:pro 427 --IKQDDLDRAREQITLFAGNPVQ----RPQEDGSR 456 (456) Q Consensus 427 --~~~~e~~~~~e~~~~~~~~~~~----~~~~~Gs~ 456 (456) ..++.+++..+. .++++..++ ..+..|.- T Consensus 480 ~E~~~I~~era~~a-~a~a~a~~~~~a~~~~~~g~~ 514 (527) T protein:vir:10 480 EDFRQATEDKKTQG-IAQAEAADPFGAQMAAEQGIP 514 (527) T ss_pred HHHHHHHHHHHHHh-HHhhhhcCchhhhhccccCCC Confidence 234444433332 222222211 12222222 No 70 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=100.00 E-value=7e-40 Score=235.26 Aligned_cols=447 Identities=10% Similarity=0.068 Sum_probs=273.6 Q ss_pred CC-CCCHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHH Q lcl|Aclame:pro 1 MT-ASTPAEWLPVLTKR-----------------IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLM 62 (456) Q Consensus 1 ~~-~~t~~~~~~~l~~~-----------------~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ 62 (456) |. =..-..+++++..+ +.....++++.++||+|+++..... ..... ...+++..+|+++. T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~-~~~~~-~~~~~~~slnl~~~ 78 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYK-NTDGD-IKSRPMNHLPIART 78 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCccccccc-ccCcc-hhcccceecchHHH Confidence 11 00111122222211 3445678899999999987643111 11111 12234577899999 Q ss_pred HHHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEe Q lcl|Aclame:pro 63 VRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSV 142 (456) Q Consensus 63 iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~ 142 (456) |++.+|+++++++++++.+ |+..++.+++++++|+|.....+++..++..|.+++.+|.+ .|.+++..++|.+.+|+. T Consensus 79 i~~~~A~lv~~e~~~i~v~-d~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d-~~~~~i~~v~ad~~~P~~ 156 (522) T protein:vir:47 79 ASKKIASLVYNEQATITTK-NEILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYID-GDKVRVAFIQAPVFFPLE 156 (522) T ss_pred HHHHHhhhhcCCcceeecC-ChHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEc-CCceEEEEEcCCceEEEE Confidence 9999999999999987654 44567789999999999999999999999999999999997 578999999999999984 Q ss_pred eCCCCc-eeEEEEEEEEecCCceeEEEEEeCCe----------------EEEEEEcccccc--cccceeec-cCCCcccc Q lcl|Aclame:pro 143 DPLQPW-RIRAAMRWWRDLDAESDFAIVWSGDG----------------WQKFARPCFVQS--SSRRRLVT-RISDSWVP 202 (456) Q Consensus 143 d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~ 202 (456) .+..+. +...+.+.+...+....++++..-.+ .++.....+... ......++ ..-+.|.. T Consensus 157 ~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~ 236 (522) T protein:vir:47 157 SNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDKYKN 236 (522) T ss_pred EcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccccccccccC Confidence 433332 22223333333333333444321111 011111111100 00011111 00011111 Q ss_pred c--ccccccCceeEEEEecC----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccccc Q lcl|Aclame:pro 203 V--GDAVVTGSPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDE 270 (456) Q Consensus 203 ~--~~~~~~~~~~pv~~~~n----------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~ 270 (456) . ......+.+|+++||.| +.|.|+|+..++++|++|.+.+++++..+....++.+ . ...-....+. T Consensus 237 l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v-~-~~~l~~~~~~ 314 (522) T protein:vir:47 237 LEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIV-P-EHLTQRQYQR 314 (522) T ss_pred CCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeec-c-hHHhccCCCC Confidence 1 11223557788888743 3589999999999999999999999987754432222 0 0000000011 Q ss_pred chhhhhhhhhhhhhccceeec----CCCcceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHH Q lcl|Aclame:pro 271 NGNAIDYASIFEAAPGALWEL----PPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHN 344 (456) Q Consensus 271 ~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~ 344 (456) .+.+......++........+ ..+.++..++ +...+.|.+.++.+++.|....+++...|+.+.+. .||.+++. T Consensus 315 ~~g~~~~~~~fd~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~kTAtEi~s 394 (522) T protein:vir:47 315 PDGTIDFRPRFDVEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQGMKTATEIVS 394 (522) T ss_pred CCcccccccccCcccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCccccccccHHHHHH Confidence 111101111111111111111 1122333333 23457889999999999999999999999876544 48999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHH Q lcl|Aclame:pro 345 IEKGFLFKCEDRLSIAKIGLEAILVKALQIE--------GESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIR 416 (456) Q Consensus 345 ~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~--------g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~ 416 (456) +.+.+.++++.+++.|+.+|+++++.++.+. +......+.|.|.+..+.|..++++..++++++|++|.+++ T Consensus 395 ~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v~aG~~s~e~~ 474 (522) T protein:vir:47 395 ENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMVAAGFSTKKRA 474 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHHHH Confidence 9999999999999999999999999887543 12345678999999999999999999999999999999998 Q ss_pred HHhC-CCCccHHHHHHHHHHHHHHHHH--------hh-c-ccccccCCC Q lcl|Aclame:pro 417 RNIL-NYNADQIKQDDLDRAREQITLF--------AG-N-PVQRPQEDG 454 (456) Q Consensus 417 ~~~~-~~~~~~~~~~e~~~~~e~~~~~--------~~-~-~~~~~~~~G 454 (456) +..+ ||++++. +.+.+|.+++.... ++ . ..+..+++| T Consensus 475 i~~~~g~~eeea-~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~~d~~~ 522 (522) T protein:vir:47 475 IGKTLNISGVEA-EKELNAINSELLPMNDAELAIYGMHDQNEEKADDKG 522 (522) T ss_pred HHhcCCCChHHH-HHHHHHHHHhhccCCCCCCCCCCCCCcccccCCCCC Confidence 7654 7776543 33344444332110 00 0 011223444 No 71 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=100.00 E-value=3.9e-38 Score=225.70 Aligned_cols=438 Identities=10% Similarity=-0.005 Sum_probs=259.0 Q ss_pred CCHHHHHHHHHHHHHH------HHHHHHHHHHHhhccCc----ccc----cCcccchhhhhhhhhhcCChHHHHHHHHHH Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDD------GMSRVRLLARYSNGDAP----LPE----LTRNTSAAWRSFQREARTNWGLMVRDSVAD 69 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~------~~~~~~~~~~YY~g~~~----i~~----~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~ 69 (456) |.-=.-+++.|+.|-. ...+..+..++|.+... ..+ .....++ +...+++++|+++.|++.+|+ T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~l~~~i~~~~A~ 78 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVP--TVHDKLMNSGTGNEIVVVAAE 78 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCC--ccccccccCChHHHHHHHHHH Confidence 2222233344444321 11122222222222210 000 0000111 122346788999999999999 Q ss_pred hhhcCCcccCCC-----ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeC Q lcl|Aclame:pro 70 RIIPNGITVGGS-----ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDP 144 (456) Q Consensus 70 ~l~g~~~~~~~~-----~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~ 144 (456) +++++++++..+ +++...+.+++++++|+|...+.+++..++..|.+++.+|.+ +|+++|..++|..++|+|++ T Consensus 79 ll~~e~~~i~v~~~~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d-~~~~~i~~v~ad~~~P~~~~ 157 (518) T protein:vir:78 79 YISGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINIL-NGRPSISVHSSSQFWIDFKN 157 (518) T ss_pred hhcCCCceEEecCccccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEE-CCeeEEEEEcCCeeEEEeec Confidence 999998765422 233356678999999999999999999999999999999886 58899999999999999976 Q ss_pred CCCceeEEEEEEEEec-CCceeEEEE---EeCCe------------EE-EEEEcccccccccceeecc--------CCCc Q lcl|Aclame:pro 145 LQPWRIRAAMRWWRDL-DAESDFAIV---WSGDG------------WQ-KFARPCFVQSSSRRRLVTR--------ISDS 199 (456) Q Consensus 145 ~~~~~~~~~i~~~~~~-~~~~~~~~~---~~~~~------------~~-~~~~~~~~~~~~~~~~~~~--------~~~~ 199 (456) .. +..++.+.... .+...++++ +..+. |. ...+...... .....++. .... T Consensus 158 g~---~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~-v~~~~~~~~~~l~~~~~~~~ 233 (518) T protein:vir:78 158 NE---PFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKT-TPISAERLPEQITSYLHTND 233 (518) T ss_pred Cc---EEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCccc-cccccccccccccccccccc Confidence 53 33333322211 112222211 11111 10 0000000000 00000000 0000 Q ss_pred ccccccccccCceeEEEEecC----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc Q lcl|Aclame:pro 200 WVPVGDAVVTGSPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD 269 (456) Q Consensus 200 ~~~~~~~~~~~~~~pv~~~~n----------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d 269 (456) ..+....+++..+|++.+++| +.|.|+|+..++++|++|.+.|++++..+. +.+..++. .. ....+ T Consensus 234 ~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~-g~~~i~v~--~~-~l~~~ 309 (518) T protein:vir:78 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAAS--ER-MFRKK 309 (518) T ss_pred CccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHh-CCceeeec--hh-HhccC Confidence 011111233444444555443 238999999999999999999999998875 33333331 11 11111 Q ss_pred cchhhhhhhhhhhhhccceeec----CCCcc----eeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHH Q lcl|Aclame:pro 270 ENGNAIDYASIFEAAPGALWEL----PPGVD----IWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAE 340 (456) Q Consensus 270 ~~g~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~ 340 (456) .+|........+..+......+ +.+.+ +.+++ ....+.|.+.++.+++.|....|+++..|+...+..||. T Consensus 310 ~~~~~~~~~~~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~~~~~TAT 389 (518) T protein:vir:78 310 VNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKAT 389 (518) T ss_pred CCCCCCccccccCCCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCcccccccHH Confidence 1211111111122222222221 11222 22332 234578999999999999999999999998766678999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCccccceEEecCCCCCCHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 341 GAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG----------ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGE 410 (456) Q Consensus 341 Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g----------~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~ 410 (456) +++...+.+.+++..+++.++.+|+++++.++.+.. ......+.|.|.+..++|..+++++.++++++|+ T Consensus 390 ei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~~~v~aGi 469 (518) T protein:vir:78 390 EIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALA 469 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHHHHHhcCC Confidence 999999999999999999999999999988876532 1233568899999999999999999999999999 Q ss_pred CcHHHHHHhC--CCCccHHHHHHHHHHHHHHHHHhhcc-----cccccCCC Q lcl|Aclame:pro 411 SWASIRRNIL--NYNADQIKQDDLDRAREQITLFAGNP-----VQRPQEDG 454 (456) Q Consensus 411 ~s~~t~~~~~--~~~~~~~~~~e~~~~~e~~~~~~~~~-----~~~~~~~G 454 (456) +|.+++++++ +|++ +.++.+.+|.+++.... ..+ ...+..+| T Consensus 470 mS~e~~i~~~~~~~~d-eea~~e~~ri~~E~~~~-~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 470 MSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIG-EVPDPEAIGGMETKGG 518 (518) T ss_pred CCHHHHHHHhCCCCCH-HHHHHHHHHHHHHhccc-CCCCCccccCCCCCCC Confidence 9999988764 4544 44444555555443221 111 11223344 No 72 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=100.00 E-value=1.4e-39 Score=233.53 Aligned_cols=440 Identities=13% Similarity=0.057 Sum_probs=277.2 Q ss_pred CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 1 MTAS--TPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 1 ~~~~--t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) |.+- =|+-...++-.....+..+|+.+.+||.|++.-......- ...+-+..++.+++|++.. +++|+|+.+ T Consensus 9 ~p~~~~fp~~~a~wV~~~D~~RlaaY~ly~d~y~n~~~el~~il~G-----~dr~~~~~ps~r~~V~~~~-~~Lg~~~~~ 82 (563) T protein:vir:74 9 DPAKPFLRGGDDNIVDENDKNRVRAYDLYENIYLNSAETLKLVLRG-----DDSVPILMPSGRKIVEAVH-RFLGVGFDY 82 (563) T ss_pred CCCcccccccccccCCHHHHHHHHHHHHHHHhhcCchhhhhhhcCC-----CceeeeccchHHHHHHHHH-HhcCCCcEE Confidence 3211 1222222344566778999999999999998643211111 1111233457889999965 555999887 Q ss_pred CCCcc---c----cHHHHHHHHHHhcChhHHHHHHHHHHhhCCee-EEEEEeC---CCCceEEEEEccceEEEEeeCCCC Q lcl|Aclame:pro 79 GGSAD---S----DLALRARRIWRDNRMDSVCKQWVKYGLDFGES-YLTCWRR---DDGTATITADSPETMVVSVDPLQP 147 (456) Q Consensus 79 ~~~~d---~----~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a-~~~v~~~---~~g~~~i~~~~p~~~~~i~d~~~~ 147 (456) ....+ . .....|..+++++++..++.+..+++.+-|.+ |.++|-. +.+++++..++|.+.|++-||... T Consensus 83 ~Ve~~~~de~~~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g~R~rv~~vDP~~~fp~~dpd~v 162 (563) T protein:vir:74 83 LVEPDMGDEGIRQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNKKAGERISVDEVDPRQIFLIEDGSTV 162 (563) T ss_pred ecCccccCcchHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccccccCCCceEeecCCceeeeccCCCCc Confidence 43222 1 13345678889999999999999999999986 5566643 345899999999999997666544 Q ss_pred ceeE--EEEEEEEecCC-----------------ceeEEEEEeCCeEEEEEEcccccccccc---eeeccCCC-----cc Q lcl|Aclame:pro 148 WRIR--AAMRWWRDLDA-----------------ESDFAIVWSGDGWQKFARPCFVQSSSRR---RLVTRISD-----SW 200 (456) Q Consensus 148 ~~~~--~~i~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~ 200 (456) .... .+..-|...+. ++.+.+.|..+.+.+--. .|..-+. .......+ .. T Consensus 163 ~g~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lndeg~~~~~~~~dae~w~lg---~wd~r~~~~~~~~~~~~~~~~~~~d 239 (563) T protein:vir:74 163 VGFHMVDIVQDFRSPDDPSKKLARRRTFRRVRNDEGMFTGRISSELTHWTLG---NWDDRGAISDEQARRKEQVRSAQHD 239 (563) T ss_pred ccceeeecccCCCCCcchhccceeeeeeeeeeCCCCCccceeeeccchhccc---cccccCccchhhhcccchhhhhhhh Confidence 3222 11112221111 111111111111100000 0000000 00001111 11 Q ss_pred cccccccccCceeEEEEecC------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhh Q lcl|Aclame:pro 201 VPVGDAVVTGSPPPVVVYQN------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNA 274 (456) Q Consensus 201 ~~~~~~~~~~~~~pv~~~~n------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~ 274 (456) .+....+..++.+|+++|+| .+|+|++++++++++.+|+++++...++.+..+|+.++.|..+. ....|+. T Consensus 240 ~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~tG~pi~vl~~~~p~---d~~~g~~ 316 (563) T protein:vir:74 240 EEEEELPEPISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQGLGMYVTNASAPV---DPNTGEL 316 (563) T ss_pred chhhhccccccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcCCCeEEecccccc---ccccccc Confidence 13344577888999999986 47999999999999999999999999999999998887664322 1122322 Q ss_pred hhhhhhhhhhccceeecCCCc---ceeeccc-cchHHHHHHHHHHHH-HHHhhcCCChhhhc--cccccchHHHHHHHHH Q lcl|Aclame:pro 275 IDYASIFEAAPGALWELPPGV---DIWESQA-NDFTPMLSAIKEHIR-QLSSATKTPLPMLM--PDSANQSAEGAHNIEK 347 (456) Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~-~i~~~t~~p~~~~~--~~~~n~Sg~Al~~~~~ 347 (456) ..|..++|.+|.++.+. .+..++. .+++++..+++.+.. -++.++++|...+| ..+..+||.||+..+. T Consensus 317 ----~~w~vgpG~i~El~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA~G~vD~~~~~SGiALeL~L~ 392 (563) T protein:vir:74 317 ----TDWNIGPMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVAIGRVDVTSAESGISLELQLK 392 (563) T ss_pred ----cccccCCceeEeccCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCcceeecccccccccchhhhhhhhh Confidence 34677899999988663 3444443 456777888888776 67888999999998 4455679999999999 Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHH----H--hcCCCc----------cccceEEecCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 348 GFLFKCEDRLSIAKIGLEA----ILVKAL----Q--IEGESV----------EDTVDVSFESPDRVTLGEKYSAASLAKA 407 (456) Q Consensus 348 ~l~~k~~~~~~~f~~~l~~----~~~l~~----~--~~g~~~----------~~~i~v~f~~~~~~~~~e~ad~~~kl~~ 407 (456) +|.++|++++..+..++++ .+.+.+ + ..|... ...+.|+|.++.|.|.++.++.++.|++ T Consensus 393 PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~ivf~p~~P~d~~~vv~~~~tl~~ 472 (563) T protein:vir:74 393 PLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCIFADPMPVNKTQVTQDTLLLQQ 472 (563) T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEEeCCCCCccHHHHHHHHHHHHH Confidence 9999999999877777666 333333 1 122211 1236789999999999999999999999 Q ss_pred cCCCcHHHHHHhC---CCCc-c---HHHHHHHHHHHHHHHHHhhccc----ccccCCCCC Q lcl|Aclame:pro 408 AGESWASIRRNIL---NYNA-D---QIKQDDLDRAREQITLFAGNPV----QRPQEDGSR 456 (456) Q Consensus 408 ~g~~s~~t~~~~~---~~~~-~---~~~~~e~~~~~e~~~~~~~~~~----~~~~~~Gs~ 456 (456) +|++|++|+.++| ||.- + +...++.++..+..-+.+.++. +..+++|.- T Consensus 473 aGiiSretAv~~L~~~g~~~pdae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a~~~~g~~ 532 (563) T protein:vir:74 473 AHLILRKMAVAKLRSIGWEYPEVDDQGNALTDDDIADMLLAEAEADASLGLSAMDNGGAG 532 (563) T ss_pred cCchhHHHHHHHHHhCCCCCCcHHHHHhhcCHHHHHHHHHHHhhccCcccceecccCCCC Confidence 9999999998777 7753 3 2333444454443322222211 111222222 No 73 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=100.00 E-value=4.9e-37 Score=219.65 Aligned_cols=443 Identities=10% Similarity=0.054 Sum_probs=270.9 Q ss_pred CCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHH Q lcl|Aclame:pro 4 STPAEWLPVLTKRI---------------------DDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLM 62 (456) Q Consensus 4 ~t~~~~~~~l~~~~---------------------~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ 62 (456) |.--+.++.++++. .....|+.++++||+|+++-.. ...........++...|+++. T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~--~~~~~~~~~~~~~~sl~~~~~ 78 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVE--YINSQGKIQERDYMTLNLRKL 78 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccc--cccccccccccceeecCcHHH Confidence 33222222222211 2235577888999999987432 111111122334677899999 Q ss_pred HHHHHHHhhhcCCcccCCCcc----------ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEE Q lcl|Aclame:pro 63 VRDSVADRIIPNGITVGGSAD----------SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITA 132 (456) Q Consensus 63 iVd~~~~~l~g~~~~~~~~~d----------~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~ 132 (456) |+..+++++++++.+++.++. ...++.|++++++|+|.....+++..++..|.+++.+|.| .|.++|.+ T Consensus 79 i~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d-~~~~~I~~ 157 (517) T protein:vir:98 79 SADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVD-NGEIEFSW 157 (517) T ss_pred HHHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEe-CCeeEEEE Confidence 999999999999866543321 1235668899999999999999999999999999999997 46789999 Q ss_pred EccceEEEEeeCCCCceeEEEEEE--EEecCCceeEEE---EEeCCe------EEEEEEccccc--ccccceeeccCCCc Q lcl|Aclame:pro 133 DSPETMVVSVDPLQPWRIRAAMRW--WRDLDAESDFAI---VWSGDG------WQKFARPCFVQ--SSSRRRLVTRISDS 199 (456) Q Consensus 133 ~~p~~~~~i~d~~~~~~~~~~i~~--~~~~~~~~~~~~---~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~ 199 (456) ++|..++|+-.+.. ....+++.+ +...++...+++ .+..+. .|+.....+.. .......++... . T Consensus 158 v~ad~~~Pl~~~~~-~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~-~ 235 (517) T protein:vir:98 158 ALANAFYPLRSNSN-GISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE-L 235 (517) T ss_pred EcCCeeEEEEecCC-CeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccccccc-c Confidence 99999999644333 344444432 222333333332 232222 12221111111 111111111100 0 Q ss_pred cccc--ccccccCceeEEEEecC----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccc Q lcl|Aclame:pro 200 WVPV--GDAVVTGSPPPVVVYQN----------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPN 267 (456) Q Consensus 200 ~~~~--~~~~~~~~~~pv~~~~n----------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~ 267 (456) |... ........+|+++|+.| +.|.|+|+..++++|++|.+.+++....+....++ ++ - ..... T Consensus 236 ~e~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~~i-~v-p--~~~l~ 311 (517) T protein:vir:98 236 YEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTV-FV-S--DVMLR 311 (517) T ss_pred ccCCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCcce-ec-C--hhhhc Confidence 1111 11123446678878743 45999999999999999999999998777533221 11 1 11111 Q ss_pred cccchhhhhhhhhhhhhcccee--ecCCCc-ceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccc-hHHHH Q lcl|Aclame:pro 268 VDENGNAIDYASIFEAAPGALW--ELPPGV-DIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ-SAEGA 342 (456) Q Consensus 268 ~d~~g~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~-Sg~Al 342 (456) .+.++........++....... ..+.+. .+..++ +.-.+.|.+.++.+++.|....|++...|+...... +|.++ T Consensus 312 ~~~~~~g~~~~~~~d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATEi 391 (517) T protein:vir:98 312 TVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEI 391 (517) T ss_pred cccCCCCcccCCCCCcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCcccccccccccccHHHH Confidence 1111111001111111111111 122221 222332 223468999999999999999999999999765544 79999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C--CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHH Q lcl|Aclame:pro 343 HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE------G--ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWAS 414 (456) Q Consensus 343 ~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~------g--~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~ 414 (456) +...+.+.++++.+++.++.+|+++++.++.+. + ......+.|.|.|..++|..++++..++++++|++|.+ T Consensus 392 ~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms~~ 471 (517) T protein:vir:98 392 VSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTV 471 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHH Confidence 999999999999999999999999998886432 2 23456789999999999999999999999999999999 Q ss_pred HHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 415 IRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 415 t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +++. .+|+++++.+ .+..+.+++......-....++++++= T Consensus 472 ~~i~~~~g~~eeeA~-~e~~~i~~E~~~~~~~~~~~~~~~~~~ 513 (517) T protein:vir:98 472 EAIQRIFKVPKKTAE-QWLEEIRKDQIELDPVTISQRAQKRMF 513 (517) T ss_pred HHHHHhCCCChHHHH-HHHHHHHHhccccCCCCccccccCCCC Confidence 9865 4598865543 334444433221111111122222222 No 74 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=99.95 E-value=2.7e-27 Score=166.27 Aligned_cols=426 Identities=12% Similarity=0.078 Sum_probs=268.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-----ccC---cccchhhhhhhhhh-cCChHHHHHHHHHHhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP-----ELT---RNTSAAWRSFQREA-RTNWGLMVRDSVADRI 71 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~-----~~~---~~~~~~~~~~~~k~-~~n~~~~iVd~~~~~l 71 (456) |++-+|.. +..-...|.+..++++++++-|.|...+. ++| .+....++....++ -.|+++.+|+.+++++ T Consensus 1 m~~~~~~~-v~~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~v 79 (513) T protein:vir:97 1 MADKDPKS-PATTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNMVEQTLDTLSGKP 79 (513) T ss_pred CCCCCCCC-CCcCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCChHHHHHHHHhhhh Confidence 88777665 55555667888899999999998864322 333 33334454443333 3699999999999999 Q ss_pred hcCCcccCCCccccHHHHHHHHH------HhcChhHHHHHHHHHHhhCCeeEEEEEeCCCC------------------c Q lcl|Aclame:pro 72 IPNGITVGGSADSDLALRARRIW------RDNRMDSVCKQWVKYGLDFGESYLTCWRRDDG------------------T 127 (456) Q Consensus 72 ~g~~~~~~~~~d~~~~~~l~~~~------~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g------------------~ 127 (456) |-+++++.... ...+.+.| +.++++.+++.+++.++.+|+++++|-.+..+ . T Consensus 80 f~k~p~~~~~~----p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~~~~~r 155 (513) T protein:vir:97 80 FSEPIKLNEDV----PKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDRREGLR 155 (513) T ss_pred hhcCcccCcCc----hHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHHhhccC Confidence 99999875321 12233322 33689999999999999999999999654322 3 Q ss_pred eEEEEEccceEEEEe-eCCCCceeEEEEEE---EEecCCce----eEEEEEeCCeEEEEEEcccccccccceeeccCCCc Q lcl|Aclame:pro 128 ATITADSPETMVVSV-DPLQPWRIRAAMRW---WRDLDAES----DFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDS 199 (456) Q Consensus 128 ~~i~~~~p~~~~~i~-d~~~~~~~~~~i~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (456) |.+..++|.+++--- +...++...-.+++ +.+.++-. ..+.+++++.+..|+........ ... T Consensus 156 Py~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~~~---------~~e 226 (513) T protein:vir:97 156 PYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQLWEPVKKSNAQ---------KEE 226 (513) T ss_pred ceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeCceEEEEEeecCCCcc---------ccc Confidence 789999999876542 22223222222222 22333321 22345666555444322111111 123 Q ss_pred ccccccccccCceeEEEEecC---CC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhh Q lcl|Aclame:pro 200 WVPVGDAVVTGSPPPVVVYQN---PD--GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNA 274 (456) Q Consensus 200 ~~~~~~~~~~~~~~pv~~~~n---~~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~ 274 (456) |.......+.++.+|++++.. .+ +.+-|.++-.|..+.-+..|+....+.+.++|++++.|.+... ++ T Consensus 227 ~~~~~~g~~~l~~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~~~il~~~~~P~l~~~G~~~~~------~~- 299 (513) T protein:vir:97 227 WALADEWATGLNYVPLVTFYADRQGFMMGKPPLLDLAHLNVAHWQSASDQRHILTVSRFPILACSGASGED------SD- 299 (513) T ss_pred eEEecCCCCcCCceeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhhHHHHHHhcccceeeeecCCcCC------CC- Confidence 445555667889999988842 22 3445667777766777788999999999999999999975431 11 Q ss_pred hhhhhhhhhhccceeecCC-Cccee--eccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 275 IDYASIFEAAPGALWELPP-GVDIW--ESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLF 351 (456) Q Consensus 275 ~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ 351 (456) .+..+.+..|..|+ +++++ +.+.+.++...+.++.+..++...... .+...++|.||++.+.......+ T Consensus 300 -----~i~iG~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm~~~Ga~---ll~~~~~~~Ta~a~~~~~~~~~S 371 (513) T protein:vir:97 300 -----PVVVGPNKVLYNPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQMAGYGAE---FLKRKTGGQTATARALDSAEATS 371 (513) T ss_pred -----ceEeeccccccCCCCCCcceeeccCchhHHHHHHHHHHHHHHHHHHHHH---hhccCCccccHHHHHHHHHHHHH Confidence 13456777787774 56554 555566666777888888888655432 23334567899999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccceEEecCCCCCC-HHHHHHHHHHHHhcCCCcHHHHHHhC---CCC--- Q lcl|Aclame:pro 352 KCEDRLSIAKIGLEAILVKALQIEGESV-EDTVDVSFESPDRVT-LGEKYSAASLAKAAGESWASIRRNIL---NYN--- 423 (456) Q Consensus 352 k~~~~~~~f~~~l~~~~~l~~~~~g~~~-~~~i~v~f~~~~~~~-~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~--- 423 (456) ....+...+..++.+++++++...|... ...+++. ++..... .++.++++.++.++|.+|++|.++.+ |.. T Consensus 372 ~L~~~a~~le~al~~~l~~~a~wlg~~~~~~~v~in-~dF~~~~~~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~~d 450 (513) T protein:vir:97 372 DLSAMTGLFEDALAQALDITADWLRLGPNGGTVELV-KDYDLEEMDAPGLQALQVAREKRDISRKTYLNGLRLRGVLPED 450 (513) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEec-cccCcccCCHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCcc Confidence 9999999999999999999999988532 2333331 2222333 35678888999999999999987654 443 Q ss_pred --ccHHHHHHHHHHHHHHHHHh---hccccccc------CCCCC Q lcl|Aclame:pro 424 --ADQIKQDDLDRAREQITLFA---GNPVQRPQ------EDGSR 456 (456) Q Consensus 424 --~~~~~~~e~~~~~e~~~~~~---~~~~~~~~------~~Gs~ 456 (456) ++++.+.++++.+++..... ....+.|. +.|.+ T Consensus 451 ~d~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 494 (513) T protein:vir:97 451 FDEDEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEG 494 (513) T ss_pred CCHHHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCCC Confidence 22233334444333321100 01111111 11111 No 75 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=99.95 E-value=2.6e-27 Score=166.32 Aligned_cols=419 Identities=11% Similarity=0.009 Sum_probs=257.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-----ccC---cccchhhhhhhhhhc-CChHHHHHHHHHHhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP-----ELT---RNTSAAWRSFQREAR-TNWGLMVRDSVADRI 71 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~-----~~~---~~~~~~~~~~~~k~~-~n~~~~iVd~~~~~l 71 (456) |.=.|+. ..|.+..++++++++-|.|...+. ++| .+....++....+++ .|+++.+|+..++++ T Consensus 1 m~V~~~h-------p~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~~n~~~~t~~~~~G~v 73 (452) T protein:vir:94 1 MPIETKH-------PEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLSGQTDDMYNAYKQRALFYSITSKTLSALSGMV 73 (452) T ss_pred CCCCCcC-------HHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCCCCCHHHHHHHHhhccCCchHHHHHHHHhchh Confidence 5433333 456677788888888888865432 333 232333333333333 699999999999999 Q ss_pred hcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCC-ceEEEEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 72 IPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDG-TATITADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 72 ~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g-~~~i~~~~p~~~~~i~d~~~~~~~ 150 (456) |.+++++..++ ....+..-.+.++++.+.+.+++.++.+|+++++|-.+..| +|.+..++|.+++----+..++.. T Consensus 74 f~k~p~~~~p~---~l~~~~~D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~~Ii~W~~~~~g~l~ 150 (452) T protein:vir:94 74 LDQPPVITHPD---AMSKYFEDQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTENILNWEEDEDGRLL 150 (452) T ss_pred hcCCceecccH---HHHHHHhcccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechhhhcCccccccCCee Confidence 99999875432 12223223456899999999999999999999999766555 799999999998753223333333 Q ss_pred EEEEEEEEe-cCC-----ce--eEEEEEe--CCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC Q lcl|Aclame:pro 151 RAAMRWWRD-LDA-----ES--DFAIVWS--GDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN 220 (456) Q Consensus 151 ~~~i~~~~~-~~~-----~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n 220 (456) ...+|.... .++ .. ..+.+++ ++. |...+. .......+. ...+.......+.++.+|++++.. T Consensus 151 ~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~~g~-~~v~~~--~~~~~~~~~----~~~~~~~~~~~~~l~~IP~v~~~~ 223 (452) T protein:vir:94 151 MVVLREFYTVRDTADRYVQNIRVRYRCLELVDGL-LQITVH--ETQDGKVWE----LAKTSTIQNVGVTMDYIPFFCITP 223 (452) T ss_pred EEEEEEEEEEecCCCcccceeEEEEEEEEEeCCe-EEEEEE--EccCCceee----eccceeecCCCcccceeEEEEEcC Confidence 333333211 111 11 1122222 322 221110 000000000 011222334457788999998842 Q ss_pred ---CC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCC-C Q lcl|Aclame:pro 221 ---PD--GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPP-G 294 (456) Q Consensus 221 ---~~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~ 294 (456) .+ +.+.+.++-.+.-+..+..|+....+.+.++|++++.|.+.. + ....+.+..|..++ + T Consensus 224 ~~~~~~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~g~~~~------~--------~i~iG~~~~~~lpe~~ 289 (452) T protein:vir:94 224 SGLSMTPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWITGAESQ------S--------TMHIGSTKAWVIPEVA 289 (452) T ss_pred CCCCCCCCccchHHHHHHHHHHhcchhHHHHHHHHcccceeEeecCcCC------C--------ceEecccccccCCCCC Confidence 22 445567777777777888899999999999999999986532 1 12346777788884 7 Q ss_pred ccee--eccccchHHHHHHHHHHHHHHHhhcCCChhhhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 295 VDIW--ESQANDFTPMLSAIKEHIRQLSSATKTPLPMLM-PDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKA 371 (456) Q Consensus 295 ~~~~--~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~-~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~ 371 (456) ++++ +.+...++...+.++.+..++..... ..+. ...++.|++|.+.....-.+....+-..+..++.++++++ T Consensus 290 ~~~~yie~~g~~i~~~~~~l~~le~~m~~~Ga---~ll~~~~~~~~s~ea~~~~~~~~~s~L~~~a~~~e~al~~~l~~~ 366 (452) T protein:vir:94 290 AKVGFLEFTGQGLQSLEKALSEKQAQLASLSA---RLIDNSTRGSEATETVKLRYMSETASLKSVTRAVEALLNKAYSCI 366 (452) T ss_pred CcceEEccCchhHHHHHHHHHHHHHHHHHHHH---HhhccCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH Confidence 6654 55555666677778888777755333 1121 2234568887766555545555555566778889999999 Q ss_pred HHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhC---CCCccHHHHHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 372 LQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQ 448 (456) Q Consensus 372 ~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~~~~~e~~~~~e~~~~~~~~~~~ 448 (456) +...|......+++.-.-....-.++.++++.++.++|.+|++|.+..| |+.+.+ .+.++..++....+-.+.+ T Consensus 367 a~w~g~~~~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~---~e~~~i~~E~~~~~~~~~~ 443 (452) T protein:vir:94 367 MDMESMGGTLNIKLNSAFLDSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPP---GESMGVIPDPPAPEPSPSN 443 (452) T ss_pred HHHcCCCCceEEEeccccccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCc---cCHHHHHHHhhccCcccCC Confidence 9998874433333321112223345788888999999999999998766 554321 1112333334434555778 Q ss_pred cccCCCCC Q lcl|Aclame:pro 449 RPQEDGSR 456 (456) Q Consensus 449 ~~~~~Gs~ 456 (456) .|..+||| T Consensus 444 ~~~~~~~~ 451 (452) T protein:vir:94 444 TPPNPSSK 451 (452) T ss_pred CCCCCccC Confidence 89999999 No 76 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=99.92 E-value=1.4e-24 Score=151.37 Aligned_cols=433 Identities=12% Similarity=0.053 Sum_probs=244.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-----ccCcc--------cchhhhhhhhhh-cCChHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP-----ELTRN--------TSAAWRSFQREA-RTNWGLMVRDS 66 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~-----~~~~~--------~~~~~~~~~~k~-~~n~~~~iVd~ 66 (456) +-+..|+ +..-...|....+++++.++-|.|...+. ++|+- ....++....++ ..|+++.+|+. T Consensus 28 ~~~~m~d--V~~~hp~y~a~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tl~~ 105 (535) T protein:vir:80 28 LGPSLPN--VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) T ss_pred CCCCCCC--CCcCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCCCCCcccCCcCCHHHHHHHHhhccCCChhHHHHHH Confidence 2222221 33334557788888999999999874433 34431 112233333333 36999999999 Q ss_pred HHHhhhcCCcccCCCccccHHHHHHHHH-----HhcChhHHHHHHHHHHhhCCeeEEEEEeCCCC-------------ce Q lcl|Aclame:pro 67 VADRIIPNGITVGGSADSDLALRARRIW-----RDNRMDSVCKQWVKYGLDFGESYLTCWRRDDG-------------TA 128 (456) Q Consensus 67 ~~~~l~g~~~~~~~~~d~~~~~~l~~~~-----~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g-------------~~ 128 (456) +++++|.+++++..+ ..+..++ +.++++.+++.+++.++.+|+++++|-.+..+ .| T Consensus 106 l~G~vfrk~p~~~~p------~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~P~~~~~~t~ade~~~~~rP 179 (535) T protein:vir:80 106 MMGQVFSRDPIRQLP------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) T ss_pred HhchhhcCCcceecc------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccHHHHHhcCCCc Confidence 999999999876322 2233333 33689999999999999999999999654444 37 Q ss_pred EEEEEccceEEEEeeCC-CCc-eeEEE-EEE-EEecCC---c--eeEEEEEeC--CeEEEEEEcccccccccceeeccCC Q lcl|Aclame:pro 129 TITADSPETMVVSVDPL-QPW-RIRAA-MRW-WRDLDA---E--SDFAIVWSG--DGWQKFARPCFVQSSSRRRLVTRIS 197 (456) Q Consensus 129 ~i~~~~p~~~~~i~d~~-~~~-~~~~~-i~~-~~~~~~---~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (456) .+..++|++++---... .++ .+..+ ++- +...++ . ...+.+..+ ++.|..... ............ T Consensus 180 y~~~y~ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~~~~G~y~v~~~----~~~~~~~~~~~~ 255 (535) T protein:vir:80 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERW----RRETQEEMYYSY 255 (535) T ss_pred EEEEechhhccCccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEecCCceEEEEEE----EeecCCcccccc Confidence 89999999976643222 222 23322 221 222221 1 112223333 233332110 000000001111 Q ss_pred CcccccccccccCceeEEEEec---CCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccch Q lcl|Aclame:pro 198 DSWVPVGDAVVTGSPPPVVVYQ---NPD--GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENG 272 (456) Q Consensus 198 ~~~~~~~~~~~~~~~~pv~~~~---n~~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g 272 (456) ..+.......|.++++|++++. |.+ +.+-|.++-.+.-..-+..|+....+.+.++|+++++|.+......... T Consensus 256 ~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~il~~~~~P~l~i~G~~~~~~~~~~~- 334 (535) T protein:vir:80 256 SKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFK- 334 (535) T ss_pred ceeecccCCCcccCeeEEEEeecCCCCCCCCccchHHHHHHHHHHhhchhHHHHHHHHhcCceeeeecCchhhhhcCCC- Confidence 1223334455788999999884 322 2334556656655555677888888999999999999976433211111 Q ss_pred hhhhhhhhhhhhccceeecCCCccee--eccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 273 NAIDYASIFEAAPGALWELPPGVDIW--ESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFL 350 (456) Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~ 350 (456) ......+.+..|.++.+++++ ++..+.+ ..+.++.+..++.....- .+...++|.++.+.+....... T Consensus 335 -----~~~i~iG~~~~~~lP~~~~~~~~e~~~~~~--a~~~l~~~e~qM~~lGa~---ll~~~~~~~Ta~~a~~~~~~~~ 404 (535) T protein:vir:80 335 -----DFKVHLGSRAIIPLPQGATAGILQITPNSV--PFEAMTHKESQMIAMGAN---LLVKSGGNRTFGEAQQEEASEQ 404 (535) T ss_pred -----CcceEecCcccccCCCCCCcceeeeccchh--HHHHHHHHHHHHHHHHHH---hhccCcccccHHHHHHHHHHHh Confidence 112334566777787776654 4443333 245677777766654322 1223344555554455555555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEec-CCCCCC-HHHHHHHHHHHHhcCCCcHHHHHHhC---CCCc Q lcl|Aclame:pro 351 FKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFE-SPDRVT-LGEKYSAASLAKAAGESWASIRRNIL---NYNA 424 (456) Q Consensus 351 ~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~-~~~~~~-~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~~ 424 (456) +....+-..+..++.+++++++...|.. +..++.+.-+ +..... .++.++++.++.++|.+|++|.+..| |+.. T Consensus 405 S~L~~~a~~le~al~~aL~~~A~w~G~~~~~~~~~i~~n~dF~~~~ld~~~~~all~~~~~G~Is~et~~~~L~r~gvl~ 484 (535) T protein:vir:80 405 SILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVAS 484 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEEeccccccccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC Confidence 5566666778889999999999988853 3344444322 222222 35678888999999999999987655 5543 Q ss_pred -cHHHHHHHHHHHHHHHHHhhccc--ccccCCCCC Q lcl|Aclame:pro 425 -DQIKQDDLDRAREQITLFAGNPV--QRPQEDGSR 456 (456) Q Consensus 425 -~~~~~~e~~~~~e~~~~~~~~~~--~~~~~~Gs~ 456 (456) +...+.+..+.+++........+ .++..+|+- T Consensus 485 ~~~~~eee~~ri~~E~~~~~~~~g~~~d~~~~g~~ 519 (535) T protein:vir:80 485 EDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTN 519 (535) T ss_pred cccchHHHHHHHHhhhhhccccCCCCCCCCCCCCC Confidence 32233344444444333222221 222233332 No 77 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=99.90 E-value=3.1e-23 Score=144.00 Aligned_cols=434 Identities=10% Similarity=-0.036 Sum_probs=244.2 Q ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-------ccccCccc-chhhhhhhhh-hcCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MTAST-PAEWLPVLTKRIDDGMSRVRLLARYSNGDAP-------LPELTRNT-SAAWRSFQRE-ARTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~~~t-~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~-------i~~~~~~~-~~~~~~~~~k-~~~n~~~~iVd~~~~~ 70 (456) |...+ --.=+..-...|.+..++++++++-|.|... ++..++.. ...+.....+ .-.|+++.+++.++++ T Consensus 1 ~~~~~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~l~G~ 80 (489) T protein:vir:78 1 MLTENGQGSGVKTKHREWLHYAPKWQKVRHALAGELVSYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSGMVGS 80 (489) T ss_pred CccCCCccCCCCccCHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCCCCCChHHHHHHHhccccCChHHHHHHHHhch Confidence 33221 1112223334577788889999999999542 22222221 1123322222 3369999999999999 Q ss_pred hhcCCcccCCCccccHHHHHHHHH-----HhcChhHHHHHHHHHHhhCCeeEEEEEeCCCC------------ceEEEEE Q lcl|Aclame:pro 71 IIPNGITVGGSADSDLALRARRIW-----RDNRMDSVCKQWVKYGLDFGESYLTCWRRDDG------------TATITAD 133 (456) Q Consensus 71 l~g~~~~~~~~~d~~~~~~l~~~~-----~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g------------~~~i~~~ 133 (456) +|.+++++..++ .+..++ +.++++.+.+.+++.++.+|+++++|-.+..+ .|.+..+ T Consensus 81 vfrk~p~~~~p~------~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~~~~rPy~~~~ 154 (489) T protein:vir:78 81 VMRKEPEINIPK------ELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNAGLLNPTIAFY 154 (489) T ss_pred hhcCCcceeccH------HHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHHhcCCcEEEEe Confidence 999998874321 233333 33689999999999999999999999776655 5889999 Q ss_pred ccceEEEEeeC-CCCc-eeEEE-EEEE-E--ec-CC----ceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccc Q lcl|Aclame:pro 134 SPETMVVSVDP-LQPW-RIRAA-MRWW-R--DL-DA----ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVP 202 (456) Q Consensus 134 ~p~~~~~i~d~-~~~~-~~~~~-i~~~-~--~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (456) +|.+++----. ..++ .+..+ ++.. . +. ++ ....+.+++.+....|....+.....+.... ...... T Consensus 155 ~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~~~---~~~~~~ 231 (489) T protein:vir:78 155 TTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGAQE---DVVEIY 231 (489) T ss_pred chhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCcccc---eeeEEe Confidence 99998654221 2222 23322 2221 1 11 11 1233445555432222211111111100000 000011 Q ss_pred cccccccCceeEEEEecC---CC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh Q lcl|Aclame:pro 203 VGDAVVTGSPPPVVVYQN---PD--GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY 277 (456) Q Consensus 203 ~~~~~~~~~~~pv~~~~n---~~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~ 277 (456) .....+.++.+|++++.. .+ +.+-|.++-.|.-+.=+..|+....+.+.++|+++++|.+.........+++ T Consensus 232 ~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~i~G~d~~~~~~~~~~~~--- 308 (489) T protein:vir:78 232 PDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGENLTPQAFKEANP--- 308 (489) T ss_pred ccCCCCccCeeeEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCccCCcccccccCc--- Confidence 123346788899988742 22 2333455555544445567888888999999999999975432221222222 Q ss_pred hhhhhhhccceeecCCCccee--eccccchHHHHHHHHHHHHHHHhhc-CCChhhhccccccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 278 ASIFEAAPGALWELPPGVDIW--ESQANDFTPMLSAIKEHIRQLSSAT-KTPLPMLMPDSANQSAEGAHNIEKGFLFKCE 354 (456) Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~t-~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~ 354 (456) ..+..+.+..+.+++++++. +.+...+ -.+.++.+..++.... .+. . .++|-|+++.+.....-.+... T Consensus 309 -~~i~~g~~~~~~lp~~~~~~~ie~~~~~~--~r~~l~~le~qm~~lGa~l~----~-~~~~~Ta~~~~~~~~~~~S~L~ 380 (489) T protein:vir:78 309 -NGIKFGSRRGHNLGYGGSAQLIQAGENNL--ARQNMLDKEQQAIQIGAQLI----T-PTQQITAQSARIQRGADTSVMA 380 (489) T ss_pred -cceeeCCcccccCCCCCCcceeccCcchH--HHHHHHHHHHHHHHHhhhhc----c-CCcchhHHHHHHHHHHhhHHHH Confidence 22334555667777776654 4333332 2445666665555432 332 2 2346788888888877778888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccceEEe-cCCCCCC-HHHHHHHHHHHHhcCCCcHHHHHHhC---CCCccHHHH Q lcl|Aclame:pro 355 DRLSIAKIGLEAILVKALQIEGESVEDTVDVSF-ESPDRVT-LGEKYSAASLAKAAGESWASIRRNIL---NYNADQIKQ 429 (456) Q Consensus 355 ~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f-~~~~~~~-~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~~~~ 429 (456) .+-..+..++.+++++++...|..+...+.+.- ++..... .++.++++.++.++|.+|++|.+..| |+.+...++ T Consensus 381 ~~a~~~e~al~~~l~~~a~w~G~~~~~~~~i~~n~dF~~~~~d~~~~~al~~~~~~G~is~~t~~~~L~~~gv~d~~~e~ 460 (489) T protein:vir:78 381 TIARNVSQAYTDALRWVAVMLGKPEDTEVEFRLNMDFFLEPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDWTDAD 460 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccCcccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHH Confidence 888889999999999999999976555444322 2222222 36678888999999999999987654 454433333 Q ss_pred HHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 430 DDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 430 ~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ++ ++.+++-... +...+.+..++++ T Consensus 461 ~~-~ei~~~~~~~-~~~~~g~~~~~~q 485 (489) T protein:vir:78 461 IK-DAVADQPLPV-ATEVQGEIPQSAQ 485 (489) T ss_pred HH-HHHhhcCCCc-ccCCcccCCCCcc Confidence 33 3333321111 1111222233333 No 78 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=99.90 E-value=1.1e-22 Score=140.98 Aligned_cols=432 Identities=12% Similarity=0.032 Sum_probs=243.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-----cccCcc--------cchhhhhhhhhh-cCChHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPL-----PELTRN--------TSAAWRSFQREA-RTNWGLMVRDS 66 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i-----~~~~~~--------~~~~~~~~~~k~-~~n~~~~iVd~ 66 (456) |.+- ..-...|....+++++.++-|.|...+ .++|+- ....+.....++ -.|+++.+|+. T Consensus 1 m~~V------~~~hp~y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~rA~~~n~~~~t~~~ 74 (501) T protein:vir:95 1 MPNV------SFIRPELGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAYLKRAVFYNVARRTLFG 74 (501) T ss_pred CCCC------CCCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHHhhccccCchHHHHHHH Confidence 5532 111234677788888899999887543 344431 112233333333 36999999999 Q ss_pred HHHhhhcCCcccCCCccccHHHHHHHHH-----HhcChhHHHHHHHHHHhhCCeeEEEEEeCCC-C-------------- Q lcl|Aclame:pro 67 VADRIIPNGITVGGSADSDLALRARRIW-----RDNRMDSVCKQWVKYGLDFGESYLTCWRRDD-G-------------- 126 (456) Q Consensus 67 ~~~~l~g~~~~~~~~~d~~~~~~l~~~~-----~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~-g-------------- 126 (456) +++++|.+++++..+ ..+..++ +.++++.+.+.+++.++.+|+++++|-.+.. + T Consensus 75 l~G~vf~k~p~~~~p------~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~ 148 (501) T protein:vir:95 75 LVGQVFMRDPVVKVP------ALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRI 148 (501) T ss_pred HhhhhhcCCcceeCc------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccC Confidence 999999999887422 1233333 3368999999999999999999999965432 2 Q ss_pred ceEEEEEccceEEEEeeCCC-Cc-eeEEE-EE-EEEecCCc-----eeEEEEEeC--CeEEEEE--Ecccccccccceee Q lcl|Aclame:pro 127 TATITADSPETMVVSVDPLQ-PW-RIRAA-MR-WWRDLDAE-----SDFAIVWSG--DGWQKFA--RPCFVQSSSRRRLV 193 (456) Q Consensus 127 ~~~i~~~~p~~~~~i~d~~~-~~-~~~~~-i~-~~~~~~~~-----~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~ 193 (456) .|.+..++|.+++---.... ++ .+..+ ++ .+.+.++. ...+.+... ++.+.++ +............. T Consensus 149 rPy~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~~~~~ 228 (501) T protein:vir:95 149 RPTLYVYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADGSKIP 228 (501) T ss_pred CcEEEEecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCcceec Confidence 27899999998765432222 22 23222 22 12222221 112222222 2222211 11100000000000 Q ss_pred ---ccCCCcccccccccccCceeEEEEecC---CCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccc Q lcl|Aclame:pro 194 ---TRISDSWVPVGDAVVTGSPPPVVVYQN---PDG--MGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGL 265 (456) Q Consensus 194 ---~~~~~~~~~~~~~~~~~~~~pv~~~~n---~~~--~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~ 265 (456) ......+.......|.++.+|++++.. .+. .+-+.++-.+.-+.-+..|+....+.+.++|+++++|.+... T Consensus 229 ~~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~lA~lni~hy~~ssd~~~~l~~~~~P~l~i~G~~~~~ 308 (501) T protein:vir:95 229 KGNYQQYVVYKPTDAQGKRLTEIPFMFIGSENNDSNPDNPNFYDLASLNMAHYRNSADYEESCYIVGQPTPVLIGLTEEW 308 (501) T ss_pred CCcccccceeeeeccCCCcCCeeeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhHHHHHHHHcccceeeeeCCcccc Confidence 001122333344457889999998742 222 232334333333333455778888899999999999976542 Q ss_pred cccccchhhhhhhhhhhhhccceeecCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHH Q lcl|Aclame:pro 266 PNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNI 345 (456) Q Consensus 266 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~ 345 (456) .. .++ ...+..+.+..|..|+++++..+......-..+.++.+..++..... ..+...++|-||++.+.. T Consensus 309 ~~---~~~----~~~i~~G~~~~~~lP~~~~~~~ie~~~~~i~~~~l~~l~~~m~~~Ga---~ll~~~~~~~Ta~~~~~~ 378 (501) T protein:vir:95 309 VT---NVL----KGSVNFGSRGGIPLPVGADAKLLQASENTMLKEAMDTKERQMVALGA---KLVEQKEVQRTATEAELE 378 (501) T ss_pred cc---cCC----CCceeecccccccCCCCCceeEEecChhhHHHHHHHHHHHHHHHHHH---hhccCCccchhHHHHHHH Confidence 11 111 12234466677888888877655432222224557777776655432 222333456799999988 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-ccceEEecCCCCCC-HHHHHHHHHHHHhcCCCcHHHHHHhC--- Q lcl|Aclame:pro 346 EKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVE-DTVDVSFESPDRVT-LGEKYSAASLAKAAGESWASIRRNIL--- 420 (456) Q Consensus 346 ~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~-~~i~v~f~~~~~~~-~~e~ad~~~kl~~~g~~s~~t~~~~~--- 420 (456) .....+....+-..+..++.+++++++...|..+. ..+++. ++-.... .++.++++.++.++|.+|++|.+..+ T Consensus 379 ~~~~~S~L~~~a~~le~al~~~l~~~a~w~g~~~~~~~v~i~-~df~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~ 457 (501) T protein:vir:95 379 AASEGSTLSSATKNVSAAFEWALKWAARWVGQADSGVKFELN-TDFDIARMTPDERRSLVEEWQKGAITFEEMRTGLRKA 457 (501) T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEe-cccccccCCHHHHHHHHHHHhCCCCcHHHHHHHHHhC Confidence 88888888888888999999999999999986432 233331 3322322 46678899999999999999996544 Q ss_pred CCCccHHHHHHHHHHHHHHH---HHhhc-ccccccCCCCC Q lcl|Aclame:pro 421 NYNADQIKQDDLDRAREQIT---LFAGN-PVQRPQEDGSR 456 (456) Q Consensus 421 ~~~~~~~~~~e~~~~~e~~~---~~~~~-~~~~~~~~Gs~ 456 (456) ++.....+ .+.++++++.. ..... .......+|.. T Consensus 458 ~v~~~~~~-~e~e~i~~~~~~~~~~~~~~~~~~~~~gg~~ 496 (501) T protein:vir:95 458 GVATEDDS-KAKEKIAKDTAEAMALATPANVPGDGSGGDN 496 (501) T ss_pred CCCChhHH-HHHHHHHhhhcCcccccccCCCCCCCccccc Confidence 55543222 22222222211 11011 11111223333 No 79 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=99.88 E-value=6.5e-22 Score=136.72 Aligned_cols=435 Identities=11% Similarity=-0.029 Sum_probs=238.3 Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-------ccccCccc-chhhhhhhhhh-cCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MT-ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAP-------LPELTRNT-SAAWRSFQREA-RTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~-~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~-------i~~~~~~~-~~~~~~~~~k~-~~n~~~~iVd~~~~~ 70 (456) |. +----.=+..-...|....++++++++-|.|... +++.++.. ...++....++ -.|+++.+++.++++ T Consensus 1 ~~~~~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~l~G~ 80 (491) T protein:vir:95 1 MLTANGQGSGVKTKHREWLHYAPKWQKVRHALAGDLVGYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSGMVGS 80 (491) T ss_pred CcccCCccCCCCccCHHHHHHHHHHHHHHHHhcCcchhhcccCCCcCCCCCCCHHHHHHHHhcccCCChHHHHHHHHhch Confidence 32 1111112223334577788889999999998531 22222221 11233333333 369999999999999 Q ss_pred hhcCCcccCCCccccHHHHHHHHH-----HhcChhHHHHHHHHHHhhCCeeEEEEEeCCCC------------ceEEEEE Q lcl|Aclame:pro 71 IIPNGITVGGSADSDLALRARRIW-----RDNRMDSVCKQWVKYGLDFGESYLTCWRRDDG------------TATITAD 133 (456) Q Consensus 71 l~g~~~~~~~~~d~~~~~~l~~~~-----~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g------------~~~i~~~ 133 (456) +|.+++++..++ .+..++ +.++++.+.+.+++.++.+|+++++|-.+..+ .|.+..+ T Consensus 81 vfrk~p~~~~p~------~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~Ade~~~~~rPy~~~~ 154 (491) T protein:vir:95 81 VMRKEPEINIPK------ELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAAEQNAGLLNPTIAFY 154 (491) T ss_pred hhcCCceeeccH------HHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHHHHHHhcCCcEEEEe Confidence 999998874322 233333 33689999999999999999999999776554 4889999 Q ss_pred ccceEEEEe-eCCCCc-eeEEEEEEEE----ecCC---c--eeEEEEEeCC--eEEEEEEcccccccccceeeccCCCcc Q lcl|Aclame:pro 134 SPETMVVSV-DPLQPW-RIRAAMRWWR----DLDA---E--SDFAIVWSGD--GWQKFARPCFVQSSSRRRLVTRISDSW 200 (456) Q Consensus 134 ~p~~~~~i~-d~~~~~-~~~~~i~~~~----~~~~---~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (456) +|.+++--- +...++ .+..++.... +..+ . ...+.++..+ +.|.... +.....+... ....+ T Consensus 155 ~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~g~~~~~v--~r~~~~g~~~---~~~~~ 229 (491) T protein:vir:95 155 TTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDTDGNYRQRL--FRFDAEGGAQ---EEVVE 229 (491) T ss_pred chhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeecCCCceEEEE--EEEcCCCcce---eeeee Confidence 999986542 112222 2322222211 1111 1 1222233322 1111110 0000000000 00011 Q ss_pred cccccccccCceeEEEEec---CCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhh Q lcl|Aclame:pro 201 VPVGDAVVTGSPPPVVVYQ---NPD--GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI 275 (456) Q Consensus 201 ~~~~~~~~~~~~~pv~~~~---n~~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~ 275 (456) .......+.++.+|++++. |.+ +.+-+.++-.|.-+.=+..|+....+.+.++|+++++|.+......-..+++ T Consensus 230 ~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~~~G~d~~~~~~~~~~~~- 308 (491) T protein:vir:95 230 IYPDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGDNLTPQSFKEANP- 308 (491) T ss_pred eeecCCCcccCeeEEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCcccCcchhhccCc- Confidence 1112334678889998874 222 2233445544544444567888888899999999999965432211112211 Q ss_pred hhhhhhhhhccceeecCCCcceeeccccchHHHHHHHHHHHHHHHhh-cCCChhhhccccccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 276 DYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLSSA-TKTPLPMLMPDSANQSAEGAHNIEKGFLFKCE 354 (456) Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~ 354 (456) ..+..+.+..+.+|.++++..+......--.+.++.+..++... ..+ +. .++|-||++.+.....-.+... T Consensus 309 ---~~i~~g~~~~~~lP~~~~~~~ie~~~~~~~~~~l~~~e~qm~~~Ga~l----~~-~~~~~Ta~~~~~~~~~~~S~L~ 380 (491) T protein:vir:95 309 ---NGIKFGSRCGHNLGYGGSAQLIQAGENNLARQNMLDKEQQAIQIGAQL----IT-PSQQITAESARIQRGADTSVMA 380 (491) T ss_pred ---ceeEecCcCCcCCCCCCccceeecCcchHHHHHHHHHHHHHHHHHHHh----cc-CCcchhHHHHHHHHHHhhHHHH Confidence 22334555566777776665443222111233445544444332 222 22 2346789988888888788888 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccceEEec-CCC-CCCHHHHHHHHHHHHhcCCCcHHHHHHhC---CCCccHHHH Q lcl|Aclame:pro 355 DRLSIAKIGLEAILVKALQIEGESVEDTVDVSFE-SPD-RVTLGEKYSAASLAKAAGESWASIRRNIL---NYNADQIKQ 429 (456) Q Consensus 355 ~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~-~~~-~~~~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~~~~ 429 (456) .+-..+..++.+++++++...|..+...+.+.-+ +.. ..-.++.++++.++.++|.+|++|.+..| |+.+. ..+ T Consensus 381 ~~a~~~e~al~~~l~~~a~w~G~~~~~~v~i~~n~dF~~~~~~~~~~~all~~~~~G~is~~t~~~~L~~~~vl~~-~~e 459 (491) T protein:vir:95 381 TIARNVSQAYTDALRWVAMMLGKPEDSEVEFQLNMDFFLQPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDW-TDE 459 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccccccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCc-cHH Confidence 8888899999999999999999765554443222 221 22236678889999999999999987654 44432 233 Q ss_pred HHHHHHHHHHH---HHhhcccccccCCCCC Q lcl|Aclame:pro 430 DDLDRAREQIT---LFAGNPVQRPQEDGSR 456 (456) Q Consensus 430 ~e~~~~~e~~~---~~~~~~~~~~~~~Gs~ 456 (456) .+.++.+++.. ..+...+.-|+.--++ T Consensus 460 ~~~~~ie~~~~~~~~~~~~~~~~~~~~~~~ 489 (491) T protein:vir:95 460 DILNAIEDAPLPSGAVTQVAGEIPQAAQQQ 489 (491) T ss_pred HHHHHHHhcCCCCCccccccccchhhhhhc Confidence 33334333321 1111122222222222 No 80 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.82 E-value=1.3e-18 Score=118.66 Aligned_cols=424 Identities=13% Similarity=0.086 Sum_probs=225.9 Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHhhccCccc---ccCcc-cc--------hhhhhhhhhhc--CChHHHHHHHHH Q lcl|Aclame:pro 7 AEWLPVLTK----RIDDGMSRVRLLARYSNGDAPLP---ELTRN-TS--------AAWRSFQREAR--TNWGLMVRDSVA 68 (456) Q Consensus 7 ~~~~~~l~~----~~~~~~~~~~~~~~YY~g~~~i~---~~~~~-~~--------~~~~~~~~k~~--~n~~~~iVd~~~ 68 (456) +.|+++++. +...++.+.....+-|+|-..-. +.+.. .. ..++..-+.++ ++|++-+|+..+ T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 80 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDKLE 80 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 333443332 22222222333334466532111 11111 01 11222222233 349999999999 Q ss_pred HhhhcC-CcccCCC---cc----ccHHHHH---HHHHHh-------cChhHHHHHHHHHHhhCCeeEEEEEeCCCCc--- Q lcl|Aclame:pro 69 DRIIPN-GITVGGS---AD----SDLALRA---RRIWRD-------NRMDSVCKQWVKYGLDFGESYLTCWRRDDGT--- 127 (456) Q Consensus 69 ~~l~g~-~~~~~~~---~d----~~~~~~l---~~~~~~-------n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~--- 127 (456) ++++|. |+++... .+ .+..+.+ |+.|.+ .+|...+..+++..+..|.+|+.+..++.+. T Consensus 81 ~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~~~~~ 160 (502) T protein:vir:79 81 ERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRINSLTP 160 (502) T ss_pred HhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccCccCC Confidence 999997 6654211 11 2233343 344433 3688889999999999999999876654432 Q ss_pred -----eEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEccccccccc-ceeeccCCCccc Q lcl|Aclame:pro 128 -----ATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSR-RRLVTRISDSWV 201 (456) Q Consensus 128 -----~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 201 (456) +++..++|+.+..-++ ....+...|.+ +..+....+.++. ......... ...++ T Consensus 161 g~~~~l~lq~iepd~l~~~~~--~~~~i~~GVe~--d~~Gr~~aY~i~~---------~hPgd~~~~~~~rvp------- 220 (502) T protein:vir:79 161 SAGVHFWLEALEPDFIPMTSD--ESNRLNQGVFV--DDWGRPEKYLVYK---------SRPVSGRQMETKEVD------- 220 (502) T ss_pred CcccceEEEEecchhcCCCCC--CCCeeEeeeEE--CCCCceEEEEEee---------cCCCCCcccceeEec------- Confidence 4899999998843332 23344555543 3444443333322 111110000 00000 Q ss_pred ccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhh Q lcl|Aclame:pro 202 PVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIF 281 (456) Q Consensus 202 ~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~ 281 (456) ....-|.+.. .......|.|.|.+++..+..++....-.+......+.--.+|+....+.......+.. ...... T Consensus 221 -A~~vlH~f~~---~r~gQ~RGis~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~-~~~~~~ 295 (502) T protein:vir:79 221 -AERMLHLKFV---RRLHQMRGTSLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEPDGNGSK-ENEREL 295 (502) T ss_pred -hhheEEeecc---cCCccccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccccccCCCC-Cccccc Confidence 0111121110 01112358899999887655554333222222222222222333222211111111111 111223 Q ss_pred hhhcccee-ecCCCcceeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 282 EAAPGALW-ELPPGVDIWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSI 359 (456) Q Consensus 282 ~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~ 359 (456) ...+|.++ .++++.++..+++. +..+|...++.+++.|++..++|.+.+.++.+ .|..++|+.+......+...|.. T Consensus 296 ~l~pG~i~~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s-~nySs~R~~~~e~~r~~~~~q~~ 374 (502) T protein:vir:79 296 TIQPGIIYDDLKPGEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARNYN-GTYSAQRQELVESTDGYLILQDW 374 (502) T ss_pred cccCCccccccCCCceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccc-chHHHHHHHHHHHHHHHHHHHHH Confidence 45677765 57888888777655 34689999999999999999999999999875 48999999999999999998887 Q ss_pred HHHHHHHH-HHHHH--H-hcCCCc-------cccceEEecCCC--CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccH Q lcl|Aclame:pro 360 AKIGLEAI-LVKAL--Q-IEGESV-------EDTVDVSFESPD--RVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ 426 (456) Q Consensus 360 f~~~l~~~-~~l~~--~-~~g~~~-------~~~i~v~f~~~~--~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~ 426 (456) |...+-+- ++..+ + +.|.-. ..-..+.|..|. ..|+...+++..+++.+|+.|++...+..|.++++ T Consensus 375 ~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~ 454 (502) T protein:vir:79 375 FIGAVTRPMYRAWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGRNPDD 454 (502) T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHH Confidence 77654442 22111 1 233211 112468897765 57889999999999999999999999999999875 Q ss_pred HHH-HHHHHHHH-HHHHHhh-cccccc------------c-CCCCC Q lcl|Aclame:pro 427 IKQ-DDLDRARE-QITLFAG-NPVQRP------------Q-EDGSR 456 (456) Q Consensus 427 ~~~-~e~~~~~e-~~~~~~~-~~~~~~------------~-~~Gs~ 456 (456) +.+ +.+++... +.+.... ++...+ . .++.+ T Consensus 455 v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 500 (502) T protein:vir:79 455 VKRRRKAEIDENRKLDLVFDTDPASDKGGSSAATKRQEPQHTDDQS 500 (502) T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 543 32222211 1111111 111110 0 00111 No 81 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.81 E-value=2.7e-18 Score=116.89 Aligned_cols=425 Identities=13% Similarity=0.099 Sum_probs=229.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc---ccccCc-ccc-------hhhhhhhhhhc--CChHHHHHHHHH Q lcl|Aclame:pro 2 TASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAP---LPELTR-NTS-------AAWRSFQREAR--TNWGLMVRDSVA 68 (456) Q Consensus 2 ~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~---i~~~~~-~~~-------~~~~~~~~k~~--~n~~~~iVd~~~ 68 (456) .++||.-++- +......+.. .+-|+|-.. ....+. ... ..++..-+.++ ++|++-+|+..+ T Consensus 1 m~~~~~~~~a-~~~~~~~~~~-----~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 74 (495) T protein:vir:10 1 MNMTPSGYQS-LASGLLVPVG-----ASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATWV 74 (495) T ss_pred CCcccccccc-cchhhhhHHH-----hhhhhccccCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 2333332211 1111111111 112333111 000011 111 11222222233 349999999999 Q ss_pred HhhhcCCcccCCC-ccccHHHH---HHHHHHhc-------ChhHHHHHHHHHHhhCCeeEEEEEeC--CCC---ceEEEE Q lcl|Aclame:pro 69 DRIIPNGITVGGS-ADSDLALR---ARRIWRDN-------RMDSVCKQWVKYGLDFGESYLTCWRR--DDG---TATITA 132 (456) Q Consensus 69 ~~l~g~~~~~~~~-~d~~~~~~---l~~~~~~n-------~~~~~~~~~~~~~~~~G~a~~~v~~~--~~g---~~~i~~ 132 (456) ++++|.||+.... .+.+.... +|+.|.++ +|...+..+++..+..|.+|+.+... .+| .+++.. T Consensus 75 ~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~lql 154 (495) T protein:vir:10 75 AAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQI 154 (495) T ss_pred HhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceEEEE Confidence 9999999987643 33333443 44445443 67888999999999999999876543 333 358999 Q ss_pred EccceEEEEee-C--CCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcc--ccccccc Q lcl|Aclame:pro 133 DSPETMVVSVD-P--LQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSW--VPVGDAV 207 (456) Q Consensus 133 ~~p~~~~~i~d-~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 207 (456) ++|+.+.--++ . .+...+...|.+ +..+....+.++. ....+..... ....+ +...... T Consensus 155 iepd~l~~~~~~~~~~~g~~i~~GIe~--d~~Gr~vaY~i~~---------~hpgd~~~~~-----~~~~~~rvpA~~vl 218 (495) T protein:vir:10 155 IEPDMLASDIPDETLPSGGYVKGGIRF--SNGGKRKAYCFYR---------NHPAESSLIG-----DPVDTVWIKAEHVL 218 (495) T ss_pred echhhcCCCCCCCCCCCCCEEEeceEE--CCCCceEEEEEee---------cCCCcccccc-----cccceeeechhheE Confidence 99999853322 1 223445555543 3344444333332 2211111000 00011 1111233 Q ss_pred ccCceeEEEEecCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc---cchhhhhhhhhhh Q lcl|Aclame:pro 208 VTGSPPPVVVYQNPDGMGEVEPHIDI--INRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD---ENGNAIDYASIFE 282 (456) Q Consensus 208 ~~~~~~pv~~~~n~~~~s~~~~v~~l--iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d---~~g~~~~~~~~~~ 282 (456) |.+.. ......|.|.+.+++.| +|.|.......+.....++ .+|+....+....+ ..+..-....... T Consensus 219 H~f~~----r~gQ~RGis~la~i~~l~~l~~y~dael~~a~i~A~~~---~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (495) T protein:vir:10 219 HVTVL----TVRSDAGAPWFQLLLRLNELDQYEDAELVRKKTAALFA---AFIQEATADSTGGPTIGQPKRSKGGKRITG 291 (495) T ss_pred ecccc----CCCcccCcchhHHHHHHHHhhHHHHHHHHHHHHhhhhe---eeeecCCCccccccccCccccccCccccee Confidence 44321 22334577877776654 3444444444333333222 23332111111000 0000101112334 Q ss_pred hhccceeecCCCcceeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHH-HH Q lcl|Aclame:pro 283 AAPGALWELPPGVDIWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLS-IA 360 (456) Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~-~f 360 (456) ..+|.+..+.++.++..+++. +..+|.++++.+++.|++..++|.+.+.++.+++|..++|..+......++..|. .| T Consensus 292 l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~ 371 (495) T protein:vir:10 292 LNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMI 371 (495) T ss_pred cCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 678899999999998887765 4468999999999999999999999999999899999999999999988887765 34 Q ss_pred HHHH-----HHHHHHHHHhcCCC---ccc-----cceEEecCCC--CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCcc Q lcl|Aclame:pro 361 KIGL-----EAILVKALQIEGES---VED-----TVDVSFESPD--RVTLGEKYSAASLAKAAGESWASIRRNILNYNAD 425 (456) Q Consensus 361 ~~~l-----~~~~~l~~~~~g~~---~~~-----~i~v~f~~~~--~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~ 425 (456) ...+ +..+..++ +.|.- ... -..+.|..|. ..|....+++..+++.+|+.|.+...+..|.+.+ T Consensus 372 ~~~~~~pi~~~~l~~a~-l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~ 450 (495) T protein:vir:10 372 IHQFCRPVGRWFMDFAV-ASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGYDME 450 (495) T ss_pred HHHHHHHHHHHHHHHHH-HcCCCCCCCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHH Confidence 4433 22333332 23321 111 1467887775 5789999999999999999999999999999987 Q ss_pred HHHH-HHHHHHH-HHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 426 QIKQ-DDLDRAR-EQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 426 ~~~~-~e~~~~~-e~~~~~~~~~~~~~~~~Gs~ 456 (456) ++.+ +.+++.. ++.+...+.+....++.|+. T Consensus 451 ~v~~q~a~e~~~~~~~Gl~~~~~p~~~~~~~~~ 483 (495) T protein:vir:10 451 ELFDMISDANQLIDEYDLRLDSDPRYVNGSGAE 483 (495) T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcCCCccCC Confidence 5543 3333222 12221111111111111221 No 82 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.80 E-value=5.8e-19 Score=120.58 Aligned_cols=422 Identities=13% Similarity=0.078 Sum_probs=231.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc----c-cccCcccc---------hhhhhhhhhhc--CChHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAP----L-PELTRNTS---------AAWRSFQREAR--TNWGLMVR 64 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~----i-~~~~~~~~---------~~~~~~~~k~~--~n~~~~iV 64 (456) |- ||. +. ... .++-......||.|-.. . -+.+.... ..++.+-+.++ ++|++-+| T Consensus 1 ~~--~~~-----~~-~~~-~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av 71 (530) T protein:vir:38 1 MK--IPS-----LV-GPD-GKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAV 71 (530) T ss_pred Cc--cce-----ee-cCc-cccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 10 000 00 000 11223445667765311 1 01111111 11222222233 34999999 Q ss_pred HHHHHhhhcCCcccCCC-----------ccccHHHHHHHHHH---h-----------cChhHHHHHHHHHHhhCCeeEEE Q lcl|Aclame:pro 65 DSVADRIIPNGITVGGS-----------ADSDLALRARRIWR---D-----------NRMDSVCKQWVKYGLDFGESYLT 119 (456) Q Consensus 65 d~~~~~l~g~~~~~~~~-----------~d~~~~~~l~~~~~---~-----------n~~~~~~~~~~~~~~~~G~a~~~ 119 (456) +..+.+++|.||++... .+.+..+.+...|. . .+|...+..+++..+..|.+|+. T Consensus 72 ~~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~ 151 (530) T protein:vir:38 72 QLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQ 151 (530) T ss_pred HHHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEE Confidence 99999999999976432 12223344444443 2 25778889999999999999988 Q ss_pred EEeCCC-C---ceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeecc Q lcl|Aclame:pro 120 CWRRDD-G---TATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTR 195 (456) Q Consensus 120 v~~~~~-g---~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (456) ...+.+ | .+++..++|..+-.-++......+...|.+ +..+....+.++..+ ...... T Consensus 152 ~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~--d~~Gr~~aY~i~~~~--------~~~~~~-------- 213 (530) T protein:vir:38 152 ATWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKI--NDSGAALGYYVSDDG--------YPGWMA-------- 213 (530) T ss_pred eeeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEE--CCCCceEEEEEeecc--------CCCccc-------- Confidence 765443 3 257899999987644433334445555543 334444333332110 000000 Q ss_pred CCCcccccccccccCceeEEEEecC------CCCCchHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHhhcCCCcccc Q lcl|Aclame:pro 196 ISDSWVPVGDAVVTGSPPPVVVYQN------PDGMGEVEPHIDIINR---INRAELQLLSTMAIQAFRQRALKSTEHGLP 266 (456) Q Consensus 196 ~~~~~~~~~~~~~~~~~~pv~~~~n------~~~~s~~~~v~~liD~---~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~ 266 (456) ..+..... ....+.+-|+|+.+ ..|.|.|.+++..+.. |.......+.....++. +|+....... T Consensus 214 --~~~~~~~~-~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~---fi~~~~~~~~ 287 (530) T protein:vir:38 214 --QNWTYIPR-ELPGGRPSFIHVFEPMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAA---TIESELDTQS 287 (530) T ss_pred --cccceeee-eeccChhHeEeeccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhhee---eeeccCCccc Confidence 00000000 01122223444433 3478899988765544 44343333333333222 2321111000 Q ss_pred ---------ccc-------cchhhh--hhhhhhhhhccceeecCCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCCh Q lcl|Aclame:pro 267 ---------NVD-------ENGNAI--DYASIFEAAPGALWELPPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPL 327 (456) Q Consensus 267 ---------~~d-------~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~ 327 (456) ..+ ..+... .........+|.+..++++.++..+++.. ..+|..+++.+++.|++..++|. T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~y 367 (530) T protein:vir:38 288 AMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSY 367 (530) T ss_pred cccccccCCcccccccccccchhhhhcccccceeccCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCH Confidence 000 000000 01122346788899999999888777653 46788999999999999999999 Q ss_pred hhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCCCc--------cc-----cceEEecC Q lcl|Aclame:pro 328 PMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEA-----ILVKALQIEGESV--------ED-----TVDVSFES 389 (456) Q Consensus 328 ~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~-----~~~l~~~~~g~~~--------~~-----~i~v~f~~ 389 (456) +.+.++.+++|-.+.|..+......++..|..|...+-+ .+..++ ..|... .. -..+.|.. T Consensus 368 e~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~av-~~G~i~~p~~~~~~~~~~~~a~~~~~w~~ 446 (530) T protein:vir:38 368 EQLSRNYSQMSYSTARASANESWAYFMGRRKFVASRQACQMFLCWLEEAI-VRRVVTLPSKARFSFQEARTAWGNANWIG 446 (530) T ss_pred HHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HcCCccCCCCCCCCchhhHHhhhceeeec Confidence 999999888999999999999999999999887765433 222222 223211 11 13578877 Q ss_pred CC--CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHH-HHHHHHh-----------hcccccccCCC Q lcl|Aclame:pro 390 PD--RVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAR-EQITLFA-----------GNPVQRPQEDG 454 (456) Q Consensus 390 ~~--~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~-e~~~~~~-----------~~~~~~~~~~G 454 (456) |. ..|+...+++...++.+|+.|.+.+.+..|.+.+++.+ +..++.. ++.+... ....+...+|| T Consensus 447 p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~d~ 526 (530) T protein:vir:38 447 SGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRESMERRAAGLNPPAWAAAAFEAGVKKSNEEEQDG 526 (530) T ss_pred CCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCCCCCCCCCC Confidence 64 57889999999999999999999999999998765543 3322221 1111100 01111112333 Q ss_pred CC Q lcl|Aclame:pro 455 SR 456 (456) Q Consensus 455 s~ 456 (456) ++ T Consensus 527 ~~ 528 (530) T protein:vir:38 527 AR 528 (530) T ss_pred CC Confidence 33 No 83 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=99.80 E-value=3.8e-19 Score=121.58 Aligned_cols=415 Identities=12% Similarity=-0.006 Sum_probs=214.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCc-----cc-----------chhhhh-hhhhhc-CChHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTR-----NT-----------SAAWRS-FQREAR-TNWGLM 62 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~-----~~-----------~~~~~~-~~~k~~-~n~~~~ 62 (456) |.=.|+.-....+..+|..-+-....--+ ..|+.-++..+. .. ...+.. ..++++ .|+++. T Consensus 14 m~V~~~hp~y~a~~~~W~~~~d~g~~~~k-~~g~~YLPk~~~~~~~~~~d~~y~~~~~~~~~~y~~~~~~rA~~~n~~~~ 92 (488) T protein:vir:96 14 MLTPIYHPDYLVNAPQWLRNLDCVMDNIK-RKKQTYLPNLGAIPPEAKTDPKVTALAAKIEKDWEDLTWRLANYVNIVNP 92 (488) T ss_pred ecccccCHHHHHHhhhhhHhhhhhhHHHH-HhhhhcCCCCCCccccccCcchhhhhhccchhhhHhhhhhccccCchhHH Confidence 66566655455555554322110000000 122221221110 00 001111 111233 599999 Q ss_pred HHHHHHHhhhcCCcccCCCccccHHHHHHHH-HHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCC-----------ceEE Q lcl|Aclame:pro 63 VRDSVADRIIPNGITVGGSADSDLALRARRI-WRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDG-----------TATI 130 (456) Q Consensus 63 iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~-~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g-----------~~~i 130 (456) +++..++++|.+++++..++.......+.++ .+.++++.+.+.+++.++.+|+++++|-.++++ .|.+ T Consensus 93 tl~~l~G~vfrk~p~~~~~~~~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~T~ade~~~~~rPy~ 172 (488) T protein:vir:96 93 TMNAITGAVMRREPEFDTMDNPVLIGLRDNIDGKGNGIDQECKQALNALQWGSRCGWLVRSHPESATMADWNKGKKLPTA 172 (488) T ss_pred HHHHhcchhhccCceeccCCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCcCCHHHHHHhcCCcEE Confidence 9999999999999988654332222211111 233689999999999999999999999776544 3889 Q ss_pred EEEccceEEEEeeC-CCCceeEEEEEE---EEecCCc----eeE--EEEEeCCeEEEEEEcccccccccceeeccCCCcc Q lcl|Aclame:pro 131 TADSPETMVVSVDP-LQPWRIRAAMRW---WRDLDAE----SDF--AIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSW 200 (456) Q Consensus 131 ~~~~p~~~~~i~d~-~~~~~~~~~i~~---~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (456) ..++|.+++----. ..++...-.+++ +.+.++. ... ...++++.+..++..... ....+ T Consensus 173 ~~~~a~~IinW~~~~v~G~~~L~~v~lrE~~~~~D~~~~~~~~~~~~~~l~~g~~~v~~~~~~~-----------~~~e~ 241 (488) T protein:vir:96 173 AFYDALHIIDWEVEYIDGEEKLTYLSLLEDYQERDGGTYVSKQRLINHRLVDGLCEFQEVTDDE-----------YSDEW 241 (488) T ss_pred EEechhhhcCcceeccCCceeeEEEEEEEEEEeccCCCcccceEEEEEEEECcEEEEEEEecCC-----------cccce Confidence 99999998665322 222222222222 2233321 111 112333322222111000 01122 Q ss_pred cccccccccCceeEEEEecC---CC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhh Q lcl|Aclame:pro 201 VPVGDAVVTGSPPPVVVYQN---PD--GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI 275 (456) Q Consensus 201 ~~~~~~~~~~~~~pv~~~~n---~~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~ 275 (456) .......+.++.+|++++.. .+ +.+-+.++-.|.-+.=+..|+....+.....|.+++.+....... ....+++ T Consensus 242 ~~~~~g~~~l~~IP~v~~~~~~~~~~~~~pPLldLA~lnl~Hy~~ssd~~~il~~~~~p~lv~~~~~~~~~~-~~~~~~~ 320 (488) T protein:vir:96 242 TPVLINSKQSDTIPFFLASSQSNEWCIDSTPLTSLAEISLSIYVMNAYSNKAMILANEAKWMVDMGDMNKTM-ASEMNPL 320 (488) T ss_pred EeecCCCcccCeeEEEEEecCCCCCCCCCCchHHHHHHHHHHHhhhhHHHHHHHhcCCceeeeccCCCCccc-ccccccc Confidence 23334456889999998842 22 223344554454444455677777777666776665332221111 1111111 Q ss_pred hhhhhhhhhccceeec---CCCcceeeccccchHH-HHHHHHHHHHHHHhhc-CCChhhhccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 276 DYASIFEAAPGALWEL---PPGVDIWESQANDFTP-MLSAIKEHIRQLSSAT-KTPLPMLMPDSANQSAEGAHNIEKGFL 350 (456) Q Consensus 276 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~t-~~p~~~~~~~~~n~Sg~Al~~~~~~l~ 350 (456) +.+..+.. .+.+++...+ ..... ..+.++.+..++.... .+. . .++|-||++.+.....-. T Consensus 321 --------g~~~~~~~~~~~~~g~~~~~e-~~~~~l~~~~l~~l~~qm~~~Ga~l~----~-~~~~~Ta~~~~~~~~~~~ 386 (488) T protein:vir:96 321 --------GFTLAGRMPYYVKNGDVKVIQ-AQFSPETENKVEKLFEQAVKVGASLF----T-QQSNETATGAAIRSGSST 386 (488) T ss_pred --------eeeecccccccccCCceeecC-CchhHHHHHHHHHHHHHHHHHhHhhc----c-CCCcchHHHHHHHHHHhh Confidence 11111111 1233333222 22222 2456777777765433 232 1 234568888888777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cccceEEec-CCCCCC-HHHHHHHHHHHHhcCCCcHHHHHHhC---C Q lcl|Aclame:pro 351 FKCEDRLSIAKIGLEAILVKALQIEGESV----EDTVDVSFE-SPDRVT-LGEKYSAASLAKAAGESWASIRRNIL---N 421 (456) Q Consensus 351 ~k~~~~~~~f~~~l~~~~~l~~~~~g~~~----~~~i~v~f~-~~~~~~-~~e~ad~~~kl~~~g~~s~~t~~~~~---~ 421 (456) +....+-..+..++.+++++++...|... ...+++.-+ +..... .++.++++.++..+|.+|++|.+..+ | T Consensus 387 S~L~~~a~~le~al~~~l~~~A~w~g~~~~~~~~~~~~~~in~dF~~~~ld~~~~~al~~~~~~G~Is~~t~~~~L~~~g 466 (488) T protein:vir:96 387 ASMATLGNNVEDTVRNMLRFIMRYFEGTNLYVNPDELVFKLNRDYFDVEVNPQMLQVAYAAMMEGNLPQVSWFELLKRAR 466 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCccceEEEeccCCCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCC Confidence 77777778888999999999999887533 222333322 222222 36688899999999999999987654 5 Q ss_pred CC-ccHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 422 YN-ADQIKQDDLDRAREQITLFAG 444 (456) Q Consensus 422 ~~-~~~~~~~e~~~~~e~~~~~~~ 444 (456) +. ++...+.+.++.+++. +.. T Consensus 467 vl~~d~~~e~~~~~ie~~g--~~~ 488 (488) T protein:vir:96 467 VVRGDMSKEEFDEHIAELG--FGM 488 (488) T ss_pred cCCccCCHHHHHHHHhhcC--CCC Confidence 54 3433333344444321 111 No 84 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.80 E-value=1.1e-17 Score=113.56 Aligned_cols=429 Identities=11% Similarity=0.031 Sum_probs=227.8 Q ss_pred CCCCCHHHHHH--HHHHHHHHHHHHHHH----HHHHhhccCcccccCc----ccchhhhhhhhhhc--CChHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLP--VLTKRIDDGMSRVRL----LARYSNGDAPLPELTR----NTSAAWRSFQREAR--TNWGLMVRDSVA 68 (456) Q Consensus 1 ~~~~t~~~~~~--~l~~~~~~~~~~~~~----~~~YY~g~~~i~~~~~----~~~~~~~~~~~k~~--~n~~~~iVd~~~ 68 (456) |-.-.+.-++. .+... .....|.. ..+-..|-+....... .....++..-+.++ ++|++-+|+..+ T Consensus 1 ~~~p~~~~~~~~~~~~~~--~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 78 (533) T protein:vir:34 1 MKTPTIPTLLGPDGMTSL--REYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANAIQLHQ 78 (533) T ss_pred CCCchhhhhhcccccchH--HHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 33223322221 11111 11122210 0000111111100000 00111222222233 349999999999 Q ss_pred HhhhcCCcccCCCc-----------cccHHHHH---HHHHHh-----------cChhHHHHHHHHHHhhCCeeEEEEEeC Q lcl|Aclame:pro 69 DRIIPNGITVGGSA-----------DSDLALRA---RRIWRD-----------NRMDSVCKQWVKYGLDFGESYLTCWRR 123 (456) Q Consensus 69 ~~l~g~~~~~~~~~-----------d~~~~~~l---~~~~~~-----------n~~~~~~~~~~~~~~~~G~a~~~v~~~ 123 (456) .+++|.||++.... +.+..+.+ |+.|-+ .+|...+..+++..+..|.+|+....+ T Consensus 79 ~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~ 158 (533) T protein:vir:34 79 DHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWD 158 (533) T ss_pred HHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEEeeec Confidence 99999999875321 22223334 444422 157788899999999999999987655 Q ss_pred CCC----ceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCc Q lcl|Aclame:pro 124 DDG----TATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDS 199 (456) Q Consensus 124 ~~g----~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (456) ..+ .+++..++|..+-.-++......+...|.+ +..+...-+.++.. ....... .. T Consensus 159 ~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~--d~~Gr~~aY~i~~~---------~~~~~~~---------~~ 218 (533) T protein:vir:34 159 TSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQI--NDSGAALGYYVSED---------GYPGWMP---------QK 218 (533) T ss_pred cCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEE--CCCCCeEEEEEeec---------CCCCccc---------cc Confidence 432 357899999987654443333445555533 33444433333321 1000000 00 Q ss_pred ccccccccccCceeEEEEec------CCCCCchHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccc-- Q lcl|Aclame:pro 200 WVPVGDAVVTGSPPPVVVYQ------NPDGMGEVEPHIDII---NRINRAELQLLSTMAIQAFRQRALKSTEHGLPNV-- 268 (456) Q Consensus 200 ~~~~~~~~~~~~~~pv~~~~------n~~~~s~~~~v~~li---D~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~-- 268 (456) +..... ....+..-|+|+. ...|.|.|.+++..+ +.|.......+.....|+. +|+......... T Consensus 219 ~~~~~~-~~~v~a~~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~---fi~~~~~~~~~~~~ 294 (533) T protein:vir:34 219 WTWIPR-ELPGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAA---TIESELDTQSAMDF 294 (533) T ss_pred cceeee-eeccChhHeeeeccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhee---eeecCCCccccccc Confidence 000000 0001111233332 235889999887654 4444444444433333332 232111100000 Q ss_pred ------ccc--------hhhh--hhhhhhhhhccceeecCCCcceeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhc Q lcl|Aclame:pro 269 ------DEN--------GNAI--DYASIFEAAPGALWELPPGVDIWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLM 331 (456) Q Consensus 269 ------d~~--------g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~ 331 (456) +.. +.+. .........+|.+..++++.++..+++. +..+|..+++.+++.|++..|+|.+.+. T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt 374 (533) T protein:vir:34 295 ILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLS 374 (533) T ss_pred ccCCCcccccccccccchhhhhccCcceeeccCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHh Confidence 000 0000 0111234678889999999988877655 3467889999999999999999999999 Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcCCCc--------cc-----cceEEecCCC-- Q lcl|Aclame:pro 332 PDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEA-----ILVKALQIEGESV--------ED-----TVDVSFESPD-- 391 (456) Q Consensus 332 ~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~-----~~~l~~~~~g~~~--------~~-----~i~v~f~~~~-- 391 (456) ++.++.|..+.|..+......++..|..|...+-+ .+..++ +.|.-. .. -..+.|..|. T Consensus 375 ~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~ai-l~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~ 453 (533) T protein:vir:34 375 RNYAQMSYSTARASANESWAYFMGRRKFVASRQASQMFLCWLEEAI-VRRVVTLPSKARFSFQEARSAWGNCDWIGSGRM 453 (533) T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcccCCCccCCCchhhHHhhhceeeccCCcc Confidence 99989999999999999999999998877765433 222222 223211 11 1468897764 Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHH-HHHHHHhhc-cc-----------ccccCCCCC Q lcl|Aclame:pro 392 RVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAR-EQITLFAGN-PV-----------QRPQEDGSR 456 (456) Q Consensus 392 ~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~-e~~~~~~~~-~~-----------~~~~~~Gs~ 456 (456) ..|....+++..+++.+|+.|.+...+..|.+.+++.+ +..++.. ++.+..... +. ++|.++++. T Consensus 454 ~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~ev~~q~a~e~~~~~~~gl~~~~~~~~~~~s~~~~~~~~~~~~~~~ 532 (533) T protein:vir:34 454 AIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIFAQQVRETMERRAAGLKPPAWAAAAFESGLRQSTEEEKSDSRA 532 (533) T ss_pred ccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcCccCCCCCCCCCCcccCCC Confidence 67889999999999999999999999999998765443 3333222 111110000 10 011111111 No 85 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.80 E-value=4.7e-18 Score=115.59 Aligned_cols=430 Identities=12% Similarity=0.060 Sum_probs=238.1 Q ss_pred CC-CCCHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCccc----c--cCcc--cchh-------hhhhhhhhc--CChHH Q lcl|Aclame:pro 1 MT-ASTPAEWLPVLTK-RIDDGMSRVRLLARYSNGDAPLP----E--LTRN--TSAA-------WRSFQREAR--TNWGL 61 (456) Q Consensus 1 ~~-~~t~~~~~~~l~~-~~~~~~~~~~~~~~YY~g~~~i~----~--~~~~--~~~~-------~~~~~~k~~--~n~~~ 61 (456) |- +..-..+++.++. .+..+........+.|+|-..-. + .+.. ...+ ++..-+.++ ++|++ T Consensus 1 ~~r~~~~~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~ 80 (505) T protein:vir:96 1 MKRAEKKPSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNPYAK 80 (505) T ss_pred CCCCccccchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHH Confidence 43 2222224444432 12222222233345676532111 1 1111 1111 122222233 34999 Q ss_pred HHHHHHHHhhhc-CCcccCCC-------ccccHHHHH---HHHHHh---------cChhHHHHHHHHHHhhCCeeEEEEE Q lcl|Aclame:pro 62 MVRDSVADRIIP-NGITVGGS-------ADSDLALRA---RRIWRD---------NRMDSVCKQWVKYGLDFGESYLTCW 121 (456) Q Consensus 62 ~iVd~~~~~l~g-~~~~~~~~-------~d~~~~~~l---~~~~~~---------n~~~~~~~~~~~~~~~~G~a~~~v~ 121 (456) -+|+..+.+++| .|+++... .+++..+.+ |+.|-+ .+|...+..+++..+..|.+|+... T Consensus 81 ~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~ 160 (505) T protein:vir:96 81 RFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLVREH 160 (505) T ss_pred HHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEEEEe Confidence 999999999999 68876432 233444444 444432 1477788999999999999998876 Q ss_pred eCCCCc--eEEEEEccceEEEEeeC--CCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCC Q lcl|Aclame:pro 122 RRDDGT--ATITADSPETMVVSVDP--LQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRIS 197 (456) Q Consensus 122 ~~~~g~--~~i~~~~p~~~~~i~d~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (456) ....+. +++..++|+.+..-++. .+...+...|.+ +..+....+.++. ....+...... ... T Consensus 161 ~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~--d~~Gr~~aY~i~~---------~hPgd~~~~~~---~~~ 226 (505) T protein:vir:96 161 RGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIEL--DAWERPVAYHLLV---------NHPGDNSYCYH---YAG 226 (505) T ss_pred ecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEE--CCCCceEEEEEee---------cCCCccccccc---ccc Confidence 654442 58999999987544321 223345555543 4444444433332 11111100000 000 Q ss_pred Cccccc--ccccccCceeEEEEecCCCCCchHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHhhcCCCcc--cccccc Q lcl|Aclame:pro 198 DSWVPV--GDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINR---AELQLLSTMAIQAFRQRALKSTEHG--LPNVDE 270 (456) Q Consensus 198 ~~~~~~--~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~---~~s~~~~~~~~~~~~~~~i~G~~~~--~~~~d~ 270 (456) ..+..+ ...-|.+.. .......|.|.|.+++..+..++. .....+.....++ .+|+..... ....+. T Consensus 227 ~~~~rvpa~~vlH~f~~---~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a---~fi~~~~~~~~~~~~~~ 300 (505) T protein:vir:96 227 QTYERVPADEIIHTFVP---WRPHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKV---GFYEQDPEAYDQPPEDD 300 (505) T ss_pred ccccccCHhHhhhhhcc---cCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhhe---eeeecCCccCCCccccc Confidence 011111 112222211 011223588999998876544443 3333333333222 234432211 111122 Q ss_pred chhhhhhhhhhhhhccceeecCCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHH Q lcl|Aclame:pro 271 NGNAIDYASIFEAAPGALWELPPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGF 349 (456) Q Consensus 271 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l 349 (456) .+. ......+|.+..++++.++..+++.. ..+|....+.+++.|++..++|.+.+.++.+++|..+.|..+... T Consensus 301 ~~~-----~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~ 375 (505) T protein:vir:96 301 QGE-----IVEEVEAGTYQLLPYGIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDE 375 (505) T ss_pred cCc-----cccccCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHH Confidence 222 22346688999999999988877664 468899999999999999999999999998889999999999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH---hcCCC------ccccceEEecCCC--CCCHHHHHHHHHHHHhcCCCcHHHHH Q lcl|Aclame:pro 350 LFKCEDRLSIAKIGLEA-ILVKALQ---IEGES------VEDTVDVSFESPD--RVTLGEKYSAASLAKAAGESWASIRR 417 (456) Q Consensus 350 ~~k~~~~~~~f~~~l~~-~~~l~~~---~~g~~------~~~~i~v~f~~~~--~~~~~e~ad~~~kl~~~g~~s~~t~~ 417 (456) ...++..|..|...+-+ +++..+. +.|.- ...-..+.|..|. ..|+...+++..+++.+|+.|.+... T Consensus 376 ~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~ 455 (505) T protein:vir:96 376 RDLYKLLQFFVVTELLERVAGNLISMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSII 455 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHH Confidence 99999998887765444 2222221 23321 1112468898775 57889999999999999999999999 Q ss_pred HhCCCCccHHHH-HHHHHHH-HHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 418 NILNYNADQIKQ-DDLDRAR-EQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 418 ~~~~~~~~~~~~-~e~~~~~-e~~~~~~~~~~~~~~~~Gs~ 456 (456) +..|.+.+++-+ +..+++. ++.+.....+. .+...++. T Consensus 456 a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~-~~~~~~~~ 495 (505) T protein:vir:96 456 RAAGDDPEDVFDEIAWEEQLMRDKGVNPTPPE-QESKDATT 495 (505) T ss_pred HHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCCCC Confidence 999998765543 3333222 12221111111 11111111 No 86 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.78 E-value=3e-17 Score=111.17 Aligned_cols=437 Identities=12% Similarity=0.006 Sum_probs=227.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHhhccCcccccC-cc---cchhhhhhhhhhcC--ChHHHHHHHHHHhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVR---LLARYSNGDAPLPELT-RN---TSAAWRSFQREART--NWGLMVRDSVADRI 71 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~---~~~~YY~g~~~i~~~~-~~---~~~~~~~~~~k~~~--n~~~~iVd~~~~~l 71 (456) .....+..-....... ...|+ ...+...|-....... .. ....++..-+.++. +|++-+|+..+.++ T Consensus 9 ~~~~a~~~~~~~~~~~----~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~~~nv 84 (553) T protein:vir:63 9 LSEVTSGRPEQSASLG----GGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQRDSI 84 (553) T ss_pred hcccccccchhhhhhh----cccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhh Confidence 2222222111211111 11111 0000111101000000 00 01112222222333 49999999999999 Q ss_pred hcCCcccCCCc------------cccHHHH---HHHHHHhc-----------ChhHHHHHHHHHHhhCCeeEEEEEeCCC Q lcl|Aclame:pro 72 IPNGITVGGSA------------DSDLALR---ARRIWRDN-----------RMDSVCKQWVKYGLDFGESYLTCWRRDD 125 (456) Q Consensus 72 ~g~~~~~~~~~------------d~~~~~~---l~~~~~~n-----------~~~~~~~~~~~~~~~~G~a~~~v~~~~~ 125 (456) +|.||++.... +.+..+. +|+.|-++ +|...+..+++..+..|.+|+....... T Consensus 85 VG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~ 164 (553) T protein:vir:63 85 VGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAEWDRA 164 (553) T ss_pred ccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEeeeccC Confidence 99999874321 1222233 34444321 4778889999999999999987654433 Q ss_pred -C---ceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEe--CCeEEEEEEcccccccccceeeccCCCc Q lcl|Aclame:pro 126 -G---TATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWS--GDGWQKFARPCFVQSSSRRRLVTRISDS 199 (456) Q Consensus 126 -g---~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (456) | .+++..++|..+..-++..+...+...|.+ +..+....+.++. |+..+........+. .+.. .. T Consensus 165 ~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~--d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~-----r~~~--~~ 235 (553) T protein:vir:63 165 ANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQY--DKRGRPQGYWIQVAHPGDLYQMAPDMYKWK-----FVQQ--SK 235 (553) T ss_pred CCCcccceEEEechhhcCCCCCCCCCCeeEeeeEE--CCCCceEEEEeeccCCCcccccccccccee-----eecc--cc Confidence 2 257899999988665544344455555543 3444444333332 111111000000000 0000 00 Q ss_pred ccccccccccCceeEEEEecCCCCCchHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHhhcCCCccccc------ccc Q lcl|Aclame:pro 200 WVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIIN---RINRAELQLLSTMAIQAFRQRALKSTEHGLPN------VDE 270 (456) Q Consensus 200 ~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD---~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~------~d~ 270 (456) .......-|.+.. .......|.|.|.+++..+. .|.......+.....|+ .+|+........ ... T Consensus 236 ~v~a~~vlH~f~~---~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a---~fi~~~~~~~~~~~~~~~~~~ 309 (553) T protein:vir:63 236 PWGRRQVIHILEP---REPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYA---AAIESELPPEFIHSQMSGGSP 309 (553) T ss_pred ccChhHheecccc---cCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhhe---eeeecCCChhhhhhhcccccc Confidence 0001111122211 01122358899999876554 44444444333333322 233211110000 000 Q ss_pred chh--------------hhhhhhhhhhhccceeecCCCcceeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccc Q lcl|Aclame:pro 271 NGN--------------AIDYASIFEAAPGALWELPPGVDIWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA 335 (456) Q Consensus 271 ~g~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~ 335 (456) .+. ...........+|.+..++++.++..+++. +..+|..+.+.+++.|++..++|.+.+.++.+ T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s 389 (553) T protein:vir:63 310 NADMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFS 389 (553) T ss_pred cccccccccccccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcc Confidence 000 001122345678899999999988877765 45689999999999999999999999999998 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--H-hcCCCcc----------------ccceEEecCCC--CC Q lcl|Aclame:pro 336 NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAI-LVKAL--Q-IEGESVE----------------DTVDVSFESPD--RV 393 (456) Q Consensus 336 n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~-~~l~~--~-~~g~~~~----------------~~i~v~f~~~~--~~ 393 (456) ++|..+.|..+......+...|..|...+-+- ++..+ + +.|.-.. .-..+.|..|. .. T Consensus 390 ~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~i 469 (553) T protein:vir:63 390 KANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQI 469 (553) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCcccc Confidence 89999999999999999998888777665442 22211 1 2232110 11357898775 46 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHH-HHHHHHhhccccc-----------ccCCC-----C Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAR-EQITLFAGNPVQR-----------PQEDG-----S 455 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~-e~~~~~~~~~~~~-----------~~~~G-----s 455 (456) |....+++...++.+|+.|.+...+..|.+++++.+ +.++++. ++.+...+.+... +.+++ + T Consensus 470 DP~Ke~~A~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (553) T protein:vir:63 470 DQLKETQAAVMRIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQTS 549 (553) T ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCCCcc Confidence 889999999999999999999999999998765443 3222211 1111111111110 11111 1 Q ss_pred C Q lcl|Aclame:pro 456 R 456 (456) Q Consensus 456 ~ 456 (456) + T Consensus 550 ~ 550 (553) T protein:vir:63 550 Q 550 (553) T ss_pred c Confidence 1 No 87 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.75 E-value=8.9e-19 Score=119.53 Aligned_cols=423 Identities=10% Similarity=0.086 Sum_probs=207.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-Cccccc-----Cccc-chhhhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGD-APLPEL-----TRNT-SAAWRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~-~~i~~~-----~~~~-~~~~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) |..-+.....+ + ...... +...+..+=.|. ++.... +... ...+.... ..+.+++++||..++.++- T Consensus 1 ~~~~~~a~~~~-~-~~~a~~--~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY--~~~~l~r~iVd~~a~d~~r 74 (461) T protein:vir:80 1 MYSIDKAKQAK-I-DSKIVN--RNDFMVGHGKANSRDKLTRQTPGNGQKLDLKACENLY--ASNSIAMNIVDIISEDMVR 74 (461) T ss_pred Cccchhhhhhh-h-hhhhhh--hhHHHhhcCCcchhhhhhccccCcccccCHHHHHHHH--HhCCccchhhccchHHhhc Confidence 54333332111 0 111000 111111111111 111100 1111 11111221 2356889999999999999 Q ss_pred CCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCC---ceEEEEEccceE--EEEeeCCCCc Q lcl|Aclame:pro 74 NGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDG---TATITADSPETM--VVSVDPLQPW 148 (456) Q Consensus 74 ~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g---~~~i~~~~p~~~--~~i~d~~~~~ 148 (456) +|+.+.+. +.+..+.+...|++-++...+.++++.+..||.|++++-..+.+ ......+.|... +...++.... T Consensus 75 ~g~~i~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l~~~~~~ 153 (461) T protein:vir:80 75 AGWSLKTD-NKEMKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFNTQ 153 (461) T ss_pred CCeeeecC-CHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEEEecccc Confidence 99998764 44556678888888888999999999999999999988653321 112222222221 1111111111 Q ss_pred eeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEE--e-cCCCCCc Q lcl|Aclame:pro 149 RIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVV--Y-QNPDGMG 225 (456) Q Consensus 149 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~--~-~n~~~~s 225 (456) .+... ....+..+ -.++.| ..|.+.......... ....... ....-|...++.+.. + ..-+|.| T Consensus 154 ~i~~~-~~~~dp~s----p~fg~P-~~y~i~~~~~~~~~~---~~~~~~~----~~~~iH~SRii~~~~~~~~~~~~G~S 220 (461) T protein:vir:80 154 KVTQL-YLNQDMFS----EHFGEV-EFFEVNRVSQLGEEI---LSGTTAS----TSEQIHRSRIIHEQGLRFEGETKGRS 220 (461) T ss_pred ccchh-hhcccCcC----cccccc-eEEEEeccccccccc---cccccCc----cceEEccccEEEecCCCCCccccCcc Confidence 11100 00111000 001111 111111000000000 0000000 001112222222111 0 1235899 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccccch Q lcl|Aclame:pro 226 EVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQANDF 305 (456) Q Consensus 226 ~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (456) .++++...+.+|++++-.....+..+..+...+.|... -..+..++............| +..++.+.++.+++ .++ T Consensus 221 ~le~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~l~~--~~~~~~~~~~~~~~~~~~~~g-~~~~d~~e~~e~~~-~~l 296 (461) T protein:vir:80 221 IFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDA--LNKDDKANLTAMLDFMFRTEA-LAIIKGDEQLTKES-TNV 296 (461) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecchHHh--hhchHHHHHHHHHHHhcCCce-EEEEcCCcceEEEe-cCc Confidence 99999999999999887766554444443322222211 011112222222222222223 45566666665554 566 Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhccc--cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcC------ Q lcl|Aclame:pro 306 TPMLSAIKEHIRQLSSATKTPLPMLMPD--SANQSAEGAHNIEKGFLFKCEDRL-SIAKIGLEAILVKALQIEG------ 376 (456) Q Consensus 306 ~~~~~~~~~~~~~i~~~t~~p~~~~~~~--~~n~Sg~Al~~~~~~l~~k~~~~~-~~f~~~l~~~~~l~~~~~g------ 376 (456) ++..+.+..+.++|++.+++|...|.+. ++|.||+.=..-| ...|+.+| ..+++.+++++.+++...+ T Consensus 297 sgl~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D~~~y---yd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~ 373 (461) T protein:vir:80 297 SGMKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYDVMNY---YARVSSIQENRLRPQLEYLTRLLMWASDDCGPSI 373 (461) T ss_pred CCHHHHHHHHHHHHhhhhcCCeeeeecccCCccccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc Confidence 7778889999999999999999766443 2456777543333 33444444 5678888888888765332 Q ss_pred CCccccceEEecCCCCCCHHHHHH-------HHHHHHhcCCCcHHHHHHhC----CCCccH-HH--HHHHHHHHHHHHHH Q lcl|Aclame:pro 377 ESVEDTVDVSFESPDRVTLGEKYS-------AASLAKAAGESWASIRRNIL----NYNADQ-IK--QDDLDRAREQITLF 442 (456) Q Consensus 377 ~~~~~~i~v~f~~~~~~~~~e~ad-------~~~kl~~~g~~s~~t~~~~~----~~~~~~-~~--~~e~~~~~e~~~~~ 442 (456) .++..++++.|++...++.+|.|+ ++.+++++|++|.+++++.+ +.++.. .. ..+.+. +..+ T Consensus 374 ~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~~~~~~~~~~~~~----~~~~ 449 (461) T protein:vir:80 374 DPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAEIDK----LAKL 449 (461) T ss_pred CccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCccCCCCCchhhh----hhhh Confidence 233457899999999999888765 46667788999988876533 222220 00 011111 1111 Q ss_pred hhcccccccCCC Q lcl|Aclame:pro 443 AGNPVQRPQEDG 454 (456) Q Consensus 443 ~~~~~~~~~~~G 454 (456) .....+....+| T Consensus 450 ~~~~~~~e~~~g 461 (461) T protein:vir:80 450 VYDAYAKKNADG 461 (461) T ss_pred ccccccccCCCC Confidence 222333345555 No 88 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.74 E-value=2.1e-16 Score=106.50 Aligned_cols=424 Identities=12% Similarity=0.032 Sum_probs=227.2 Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhhccCccc---c--cCcccch-------hhhhhhhhhc--CChHHHHHHHHH Q lcl|Aclame:pro 7 AEWLPVLTKRID----DGMSRVRLLARYSNGDAPLP---E--LTRNTSA-------AWRSFQREAR--TNWGLMVRDSVA 68 (456) Q Consensus 7 ~~~~~~l~~~~~----~~~~~~~~~~~YY~g~~~i~---~--~~~~~~~-------~~~~~~~k~~--~n~~~~iVd~~~ 68 (456) +.|+++++.-+. .++.+-....+-|+|-..-. . .+..... .++..-+.++ ++|++-+|+.++ T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 80 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQPLGADTSLQKSAVSMREQCRKLDEDHDLVTGLLDRLE 80 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 445555544332 22222222334466532100 0 0111111 1122222233 349999999999 Q ss_pred HhhhcC-CcccCC---Ccccc----HHHH---HHHHHHh-------cChhHHHHHHHHHHhhCCeeEEEEEeCCCC---- Q lcl|Aclame:pro 69 DRIIPN-GITVGG---SADSD----LALR---ARRIWRD-------NRMDSVCKQWVKYGLDFGESYLTCWRRDDG---- 126 (456) Q Consensus 69 ~~l~g~-~~~~~~---~~d~~----~~~~---l~~~~~~-------n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g---- 126 (456) ++++|. |+.+.. ..|.+ ..+. +|+.|.. .+|...+..+++..+..|.+|+....+..+ T Consensus 81 ~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~~~ 160 (548) T protein:vir:95 81 ERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNYTF 160 (548) T ss_pred HhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecccccccC Confidence 999984 443321 12222 2222 4445543 358888999999999999999877654432 Q ss_pred ----ceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccc Q lcl|Aclame:pro 127 ----TATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVP 202 (456) Q Consensus 127 ----~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (456) .+++..++|..+..-++. ....+...|.+ +..+....+.++. ....+..... ....+.. T Consensus 161 g~~~~~~lqliepd~l~~~~~~-~~~~i~~GIE~--D~~Grp~aY~i~~---------~hPgd~~~~~-----~~~~~~r 223 (548) T protein:vir:95 161 ATSVPFALELLEPDYLPFSYNN-LSKGIVQGIER--DTWRRKRAYHLLK---------DHPGNLQTLG-----GSLAVKR 223 (548) T ss_pred CcccceEEEEechhhcCCCCCC-CCCceeeeeEE--CCCCceEEEEEee---------cCCCcccccc-----cccceee Confidence 147899999987543332 22344445433 3444444333332 1111100000 0001111 Q ss_pred --cccccccCceeEEEEecCCCCCchHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh Q lcl|Aclame:pro 203 --VGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINR---INRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY 277 (456) Q Consensus 203 --~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~---~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~ 277 (456) ....-|.+.. .......|.|.|.+++..+.. |.......+.....|+ .+|+....+....+.. .-.. T Consensus 224 vpA~~VlHif~~---~r~gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a---~fi~~~~~~~~~~~~~--~~~~ 295 (548) T protein:vir:95 224 VEAERIIHIAYR---KRIGQNRGVPMLHAVLIRLADLKDYEESERVAARISAALA---MYIKKGNPDSYTVEPG--KDRK 295 (548) T ss_pred echhHheecccc---cCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhhe---eeeecCCCccccCCCC--cccc Confidence 1112222211 011223588999998765544 4444443333333322 2333222211111100 1111 Q ss_pred hhhhhhhcccee-ecCCCcceeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 278 ASIFEAAPGALW-ELPPGVDIWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCED 355 (456) Q Consensus 278 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~ 355 (456) .......+|.++ .+.++.++..+++. +..+|....+.+++.|++..++|.+.+.++.+ .|..+.|..+......+.. T Consensus 296 ~~~~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s-~nYSS~R~~l~e~~r~~~~ 374 (548) T protein:vir:95 296 NRTIPIAPGMVFDDLEPGEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYD-GTYSAQRQELVEGWLGYDL 374 (548) T ss_pred cccccccCCccccccCCCceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccc-hhHHHHHHHHHHHHHHHHH Confidence 223345677765 57888888777655 34688999999999999999999999999875 5999999999999999998 Q ss_pred HHHHHHHHHHH-HHHHHHH---hcCCC------c-cccceEEecCCC--CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCC Q lcl|Aclame:pro 356 RLSIAKIGLEA-ILVKALQ---IEGES------V-EDTVDVSFESPD--RVTLGEKYSAASLAKAAGESWASIRRNILNY 422 (456) Q Consensus 356 ~~~~f~~~l~~-~~~l~~~---~~g~~------~-~~~i~v~f~~~~--~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~ 422 (456) .|..|...+-+ +++..+. +.|.- + ..-+.+.|..|. ..|....+++...++.+|+.|.+......|. T Consensus 375 ~q~~~i~~~~~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~ 454 (548) T protein:vir:95 375 LQHEFIDYWCRPVYRSWLQMYLLARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGR 454 (548) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCC Confidence 88777655544 2222221 23321 1 112578897764 5789999999999999999999999999999 Q ss_pred CccHHHH-HHHHHHH-HHHHHHh-hcccccccCCC--------------CC Q lcl|Aclame:pro 423 NADQIKQ-DDLDRAR-EQITLFA-GNPVQRPQEDG--------------SR 456 (456) Q Consensus 423 ~~~~~~~-~e~~~~~-e~~~~~~-~~~~~~~~~~G--------------s~ 456 (456) +.+++.+ +..++.. ++.+... ..+...+..+| +| T Consensus 455 D~~ev~~q~a~E~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (548) T protein:vir:95 455 DPRELKKSRETEIKANRAAGLVFSSDAYHQLVKSGMDPVEAVQKVYLGVGK 505 (548) T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccCCCCchhhhcccccc Confidence 9876443 3333221 1121111 11111111122 22 No 89 >protein:vir:93630 Length: 776 # NCBI annotation: Bcep22gp51 # Family: family:all:487 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944280;genbank:gi:38640357;genbank:GeneID:2658279 Probab=99.69 E-value=4e-16 Score=105.02 Aligned_cols=434 Identities=11% Similarity=-0.003 Sum_probs=197.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHhhccCcccccCcccchhhhhh-hhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMS-------RVRLLARYSNGDAPLPELTRNTSAAWRSF-QREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~-------~~~~~~~YY~g~~~i~~~~~~~~~~~~~~-~~k~~~n~~~~iVd~~~~~l~ 72 (456) +....-.+++.+|...+..... ...+-.+||.|++--. .....+... ...++.|.++.+|+...++.. T Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw~~----~~~~~l~~~g~p~~~~N~i~~~i~~v~g~~~ 113 (776) T protein:vir:93 38 LDSEQAVELHSRLLSYYRQELSRQQDNRAEMAVDEDYYDNIQWSQ----DEIDELKERGQAPTVYNVISQSVNWIIGSEK 113 (776) T ss_pred CCCHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCCCH----HHHHHHHhcCCceEEecchHHHHHHHHHHHH Confidence 2222223355555554433322 2234478999986321 111111111 113778999999999999988 Q ss_pred cCCcccC----CCccccHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC--CCce-EEEEEccceEEEE Q lcl|Aclame:pro 73 PNGITVG----GSADSDLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD--DGTA-TITADSPETMVVS 141 (456) Q Consensus 73 g~~~~~~----~~~d~~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~--~g~~-~i~~~~p~~~~~i 141 (456) .+.+.+. ..+|.+..+ .+..+++.|+++.....++.+++++|.||+-|+.+. ++.+ ++.+++|.+++ T Consensus 114 ~nr~~~~~~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~~~af~d~~~~G~G~~~v~~d~~~~~~~~~~~~~~p~~i~-- 191 (776) T protein:vir:93 114 RGRSDFKVLPRRKDGGKAAERKTALLKYLSDVNHTPFERSMAFEETTKAGIGWLESQVQDENDGEPIYAGAESWRNIL-- 191 (776) T ss_pred hCCcceEEecCChhHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhcCcceEEEEeeccCCCCceEeeccChhhee-- Confidence 7654332 222333322 345567889999999999999999999999887654 3444 45667888754 Q ss_pred eeCCCCc----eeEEE-EEEEEec----------------------------CC-------------------------- Q lcl|Aclame:pro 142 VDPLQPW----RIRAA-MRWWRDL----------------------------DA-------------------------- 162 (456) Q Consensus 142 ~d~~~~~----~~~~~-i~~~~~~----------------------------~~-------------------------- 162 (456) ||+.... ...++ .+.|.+. ++ T Consensus 192 ~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (776) T protein:vir:93 192 WDSTYRRLDMDDCRYIFRVKWVDLDVMLAIFPERAAQLRAAAVDNFETWGTDDIDGDDAMDSPEYERSMNSVTAGAVAYA 271 (776) T ss_pred eccccccCCHHHHhhhhhhccCCHHHHHHhcCCchHHHHHhhhhcccccchhcccccccccccccccccccccccccccC Confidence 4443221 11111 1100000 00 Q ss_pred --ceeEEEEEeCCeEEEEEEccccccccc-------------------------------ceeeccCCCccccccccccc Q lcl|Aclame:pro 163 --ESDFAIVWSGDGWQKFARPCFVQSSSR-------------------------------RRLVTRISDSWVPVGDAVVT 209 (456) Q Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 209 (456) ....+.+|+...+...+. .. ..... ++.+..+ +.....+..+.. T Consensus 272 ~~~v~v~E~~~r~~~~~~~~-~~-~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~g-~~~l~~~~~p~~ 348 (776) T protein:vir:93 272 RKRVRMIEAWFRMPVRVQRL-KG-RNSDFRGEVFDPNDERHVLEVESGRAVLAVSPMMRMHCAIMTT-RDLMWAGPSPYR 348 (776) T ss_pred CCeEEEEEEEEeeeeehhhc-cc-ccccccceeecccchHHHHHhhcCceeehheeeeeeEEEEEec-chhhhccCCCCC Confidence 000111121110000000 00 00000 0000001 111112222333 Q ss_pred CceeEEEEec------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhh Q lcl|Aclame:pro 210 GSPPPVVVYQ------NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA 283 (456) Q Consensus 210 ~~~~pv~~~~------n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~ 283 (456) .+.+|++++. ...+.|.++.+++.++.+|..+|.+.+.+. +.+..+-.|.... .++ ...... T Consensus 349 ~~~~Pfv~~~~~~~~~~~~~~G~v~~~~d~Q~~~N~~~s~~~~~l~--~~~~~~~~gav~~---~d~-------~~~~~~ 416 (776) T protein:vir:93 349 HNRYPFTPIWGFRRARDGMPYGVIRFMRGMQDDVNKRLSKALYILS--TNKVLMEEGAVDD---IDE-------FRREAA 416 (776) T ss_pred CCccceEEecCceecccccccchHHhhhHHHHHHHHHHHHHHHhhc--CCceeeccccccc---hHH-------HHHhcc Confidence 3455665442 235789999999999999999999876542 2222221222111 010 000012 Q ss_pred hccceeecCCCcc--ee-eccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 284 APGALWELPPGVD--IW-ESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIA 360 (456) Q Consensus 284 ~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f 360 (456) .++.++...+++. .. +....-...+...+......|-.+||+.+..+|..+++.||+|+......-........+.| T Consensus 417 rp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGi~~~~~G~~~n~~Sg~ai~~~~~~~~~~~~~~~dn~ 496 (776) T protein:vir:93 417 RPDAVMTVKNGKLGAVKMDVDRDLAPAHLELASRSIQMIQQVGGVTDEMLGRTTNAVSGVAIQARQEQGSVATNKLFDNL 496 (776) T ss_pred cCCceeeeCCccccccccccCcCccHHHHHHHHHHHHHHHHhhCcChHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH Confidence 3455555554431 11 11112235667778888888888999999999987766899999988887777777777777 Q ss_pred HHHHHHHHHHHHHh----cCCCc-------cccc-eEEec-----------------CCCCCC---HHHHHHHHHHHHhc Q lcl|Aclame:pro 361 KIGLEAILVKALQI----EGESV-------EDTV-DVSFE-----------------SPDRVT---LGEKYSAASLAKAA 408 (456) Q Consensus 361 ~~~l~~~~~l~~~~----~g~~~-------~~~i-~v~f~-----------------~~~~~~---~~e~ad~~~kl~~~ 408 (456) ..+++++.++++.+ .+... +.+. .|.++ ...+.+ ..+..+.++.+.+. T Consensus 497 ~~~~~~~~~~~l~li~~~~~~~r~~ri~~~~~~~~~v~in~~~~~nd~~~~~~dv~v~~~~~~~s~r~~~~~~l~ql~~~ 576 (776) T protein:vir:93 497 RLAFQQHGEKELSLIEQYMTEEKQFRITNSRGNPEYVTVNDGLPENDITRTKADFIIDEAEWRATMRQAAVAELMEVIGK 576 (776) T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEEeecCCCcceEEecccchhhhhccceeeEEEeecccchhHHHHHHHHHHHHHhh Confidence 77777776665542 11100 0000 01111 111221 22233333333321 Q ss_pred CCCcH------HHHHHhCCCC--ccHHHHH----------------------HHHHHHHHHHH----------------- Q lcl|Aclame:pro 409 GESWA------SIRRNILNYN--ADQIKQD----------------------DLDRAREQITL----------------- 441 (456) Q Consensus 409 g~~s~------~t~~~~~~~~--~~~~~~~----------------------e~~~~~e~~~~----------------- 441 (456) +.+. ..+++..++- ++..+++ +++....+..+ T Consensus 577 -~~p~~~~~~~~~~~e~~d~p~~~e~~~~l~~~~~~~~p~q~~~~~e~~~~qq~q~~~~q~q~~~~~a~~~~~qa~a~~~ 655 (776) T protein:vir:93 577 -MPPEIALTMLDLLVENMDIPNRDELVKRIRAVNGQKDPDQDEPTPEEIAREQAQQQQQQYNDALAIATLEEQQAKARKA 655 (776) T ss_pred -cChhhHHHHHHHHHHhcCccchHHHHHHHHHhhcccccchhhcchhHHHHHHHhhHHHHHHHHHhhhhhhHhhHHHHHH Confidence 0000 0111111110 0000000 00000000000 Q ss_pred -------HhhcccccccCCCCC Q lcl|Aclame:pro 442 -------FAGNPVQRPQEDGSR 456 (456) Q Consensus 442 -------~~~~~~~~~~~~Gs~ 456 (456) .+............+ T Consensus 656 ~aea~~~~aqa~~~~~~a~~~~ 677 (776) T protein:vir:93 656 AAEAQVAEAKAKHISRMAIREG 677 (776) T ss_pred HHHHHHHhhhhhhhhhcchhhh Confidence 000000000000000 No 90 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.69 E-value=6.6e-17 Score=109.28 Aligned_cols=394 Identities=9% Similarity=-0.003 Sum_probs=195.9 Q ss_pred HHHHHHHHHHhhc---cCccc----ccCcc-cchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc-ccHHHHHH Q lcl|Aclame:pro 21 MSRVRLLARYSNG---DAPLP----ELTRN-TSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD-SDLALRAR 91 (456) Q Consensus 21 ~~~~~~~~~YY~g---~~~i~----~~~~~-~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d-~~~~~~l~ 91 (456) ....+-+...--| +++-. ..+.. ...++.... ..+.+++++||..+.-++-+|+.+.+.++ .+..+.++ T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~a~Y--~~~~l~~~~vd~~a~d~~r~~~~i~~~d~~~~~~~~~~ 78 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTYYSPSLSLTDDLVQLEALW--RDNWIANKVCIKRPEDMVRNWREIYSNDLNSKQLDLFT 78 (437) T ss_pred CchhhhhHhHHhcCCCccccceeecCccccccHHHHHHHH--HhCchhhHHhhcchHHhhcCCceEecCCCCHHHHHHHH Confidence 1111111111111 00100 00000 011122221 23568899999999999999999865432 33345688 Q ss_pred HHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCC---------Cce-EEEEEccceEEEEe-eCCCCceeEE-EEEEEEe Q lcl|Aclame:pro 92 RIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDD---------GTA-TITADSPETMVVSV-DPLQPWRIRA-AMRWWRD 159 (456) Q Consensus 92 ~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~---------g~~-~i~~~~p~~~~~i~-d~~~~~~~~~-~i~~~~~ 159 (456) +.|++=++...+.++.+.+..||.|++++-.+.. |.+ .+.++++.++.|.. ...+.....+ -..+|.. T Consensus 79 ~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s~~fg~p~~y~v 158 (437) T protein:vir:52 79 KFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLSPNFGRYSEYSI 158 (437) T ss_pred HHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccccccCcceEEEE Confidence 8888877888999999999999999999876542 222 24555555544321 1111100000 0001111 Q ss_pred cCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCce-eEEEEecCCCCCchHHHHHHHHHHHH Q lcl|Aclame:pro 160 LDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSP-PPVVVYQNPDGMGEVEPHIDIINRIN 238 (456) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~~~~n~~~~s~~~~v~~liD~~~ 238 (456) ..+.. ...+.+.++. |+-+. +| ..-.+-+|.|.++.+..-+.+++ T Consensus 159 ~~~~~--~~~iH~SRii-------------------------------~~~~~~~~-~~~~~~~G~s~le~~~~~i~~~~ 204 (437) T protein:vir:52 159 LGGSQ--SITVHHSRLI-------------------------------ILNANDAP-LSDNDIWGVSDLEKIIDVLKRFD 204 (437) T ss_pred ecCCc--ceeEccceeE-------------------------------EecCccCC-CccccccCCchHHHHHHHHHHHH Confidence 00000 0011111111 11111 11 11134468999999998888888 Q ss_pred HHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhh-hhhhhhh--hhccceeecCCCcceeeccccchHHHHHHHHHH Q lcl|Aclame:pro 239 RAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI-DYASIFE--AAPGALWELPPGVDIWESQANDFTPMLSAIKEH 315 (456) Q Consensus 239 ~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456) ++.-.....+..+......+.|..... .......+ .....+. ...+.+..++.+.++.+++ .++.+..+.+... T Consensus 205 ~~~~~~~~l~~~~~~~v~k~~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~-~~~sgl~~~l~~~ 281 (437) T protein:vir:52 205 SASVNVGDLIFESKIDIFKIAGLSDKI--AAGMENEVASVISAVQEIKSATNSLLLDAENEYDRKE-LTFTGLKDLLTEF 281 (437) T ss_pred HHHHHHHHHHHHcCCCceecchHHHHh--cCCcHHHHHHHHHHHHHhcCCCceEEEcCCcceEEEe-cCcCCHHHHHHHH Confidence 877665544433333322222321111 01011111 1111111 1224455666666665553 4456667778888 Q ss_pred HHHHHhhcCCChhhhcccc-cc-chHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccccceEEecCCCC Q lcl|Aclame:pro 316 IRQLSSATKTPLPMLMPDS-AN-QSAEGAHNIEKGFLFKCEDRL-SIAKIGLEAILVKALQIEGESVEDTVDVSFESPDR 392 (456) Q Consensus 316 ~~~i~~~t~~p~~~~~~~~-~n-~Sg~Al~~~~~~l~~k~~~~~-~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~ 392 (456) .++|++.+++|...+.+.+ +. .||+.-..-|. ..|+.+| ..+.+.+++++.+++....-....++.+.|++... T Consensus 282 ~~~iaaa~~iP~t~L~G~s~~Glasge~D~~~yy---d~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~~~~~~~f~pL~~ 358 (437) T protein:vir:52 282 RNAVAGAADMPVTILFGQSVSGLASGDEDIQNYH---EAIRRLQETRLRPIFEIIDPLICNELFGGLPADWWFEFVPLTT 358 (437) T ss_pred HHHHHHHhcCchhhhcCcCcccccccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCcCC Confidence 8999999999997775443 22 35554433333 3444544 56888899998887665443445578999999888 Q ss_pred CCHHHHHH-------HHHHHHhcCCCcHHHHHHhC---C-CCccHHHHHHHHHHHHHHHHHh---hcccccccCCCCC Q lcl|Aclame:pro 393 VTLGEKYS-------AASLAKAAGESWASIRRNIL---N-YNADQIKQDDLDRAREQITLFA---GNPVQRPQEDGSR 456 (456) Q Consensus 393 ~~~~e~ad-------~~~kl~~~g~~s~~t~~~~~---~-~~~~~~~~~e~~~~~e~~~~~~---~~~~~~~~~~Gs~ 456 (456) .+.++.|+ ++.+++++|+++.+.++..| | |..-+.+.++...-.++..... +...+.+..+++- T Consensus 359 ~s~kekae~~~~~a~a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (437) T protein:vir:52 359 VKQEQQINMLNTFATAANTLIQNGVLNEYQIANELRESGLFANISAEHIEELKNADEFAGNFEEPEKMEGAQVQNSED 436 (437) T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCccccccccCCCCCCCccCCCCCCCCCCCCCCCC Confidence 88777655 46667788999887776554 2 1110011111110011100000 0111111111111 No 91 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.67 E-value=8.6e-17 Score=108.67 Aligned_cols=401 Identities=11% Similarity=0.013 Sum_probs=203.4 Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTAS-TPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~-t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) |+-+ |+... ........ ..+-..+..||-... +. + .++-... ..+.+++++||..+.-++-+++.+. T Consensus 68 ~a~d~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~-~~--~----~~l~a~Y--~~~~l~r~iVd~~A~d~~r~~~~i~ 135 (537) T protein:vir:10 68 MAMDGLDVEG-GTFSAYAN--PNLSEGLVLWYAQQA-FI--G----HQMCALI--ATHWLVNKACSQMPRDAMRKGYKII 135 (537) T ss_pred hhccccccch-hhhhhhcc--ccccchhhhhccccC-Cc--c----HHHHHHH--HhCchhhhhhhhhhHHhhcCCceee Confidence 4322 22211 11111111 111122233333322 11 1 1122222 2356889999999999999999886 Q ss_pred CCccc----cHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC-CCce----------------EEEEEccceE Q lcl|Aclame:pro 80 GSADS----DLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD-DGTA----------------TITADSPETM 138 (456) Q Consensus 80 ~~~d~----~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~-~g~~----------------~i~~~~p~~~ 138 (456) +..++ +....+...|++-++...+.++.+.+..||.+++++..+. |+.. .+.+++|.++ T Consensus 136 ~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~ 215 (537) T protein:vir:10 136 SDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWC 215 (537) T ss_pred cCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEeecCcCCcccccccccccccccceeEEEEechhhc Confidence 64332 3445677778888888999999999999999998876542 3321 1334444444 Q ss_pred EEEeeCCCCceeEEEEEEEEecCCceeEEE----EEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeE Q lcl|Aclame:pro 139 VVSVDPLQPWRIRAAMRWWRDLDAESDFAI----VWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPP 214 (456) Q Consensus 139 ~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 214 (456) .+..-......+. ....+....+. .|.+.++.+|. +.. .+.. .. T Consensus 216 ~~~~~~~~~~dp~------sp~fg~P~~y~v~g~~iH~SRli~f~------------------g~~-----~p~~-~~-- 263 (537) T protein:vir:10 216 APLLDAQASSNPV------SMHFYEPTYWLINGKKYHRSHLAIYI------------------NDE-----VVDF-LK-- 263 (537) T ss_pred ccccchhhhccCC------ccccCCceeeeecCeEecceeEEEec------------------CCC-----Cchh-hh-- Confidence 3321000000000 00000111100 01111111110 000 0000 00 Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccch--hhhhhhhhhhhhccceeecC Q lcl|Aclame:pro 215 VVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENG--NAIDYASIFEAAPGALWELP 292 (456) Q Consensus 215 v~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g--~~~~~~~~~~~~~~~~~~~~ 292 (456) ..+|=+|.|.++.+..-+.+++++.-........+......+.|.. ...++.+ ..+....... ....++.++ T Consensus 264 --~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~~~---~l~~~~~~~~r~~~~~~~r-~n~g~~~id 337 (537) T protein:vir:10 264 --PSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTKRQTVLKVDAAQ---VLANKQQFDETMSWWTATR-DNYQVRVVD 337 (537) T ss_pred --cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechHH---hhcCHHHHHHHHHHHHhhc-CCcceeEec Confidence 1122358999999988888888877665555444444433333321 1111111 1111111111 222345565 Q ss_pred CC-cceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 PG-VDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS---ANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAIL 368 (456) Q Consensus 293 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~---~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~ 368 (456) .+ .++.++. +++++..+.+....++|++.+++|...|-+.+ -|.||+.-..-|...+ +.+|..++..+++++ T Consensus 338 ~e~e~~e~~~-~~lsgl~~~l~~~~~~iAa~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I---~~~Qe~l~p~l~~l~ 413 (537) T protein:vir:10 338 KDNEDVVQID-TTLNDLDKVIMNQYQLVCAIARTPAPKMLGTVPTGFNSTGDYEEASYHEEC---ESTQDDMRPLIDRHH 413 (537) T ss_pred CCCceeEEEe-ccCCCHHHHHHHHHHHHHhhhCCCceeeccCCccccccchhHHHHHHHHHH---HHHHHHHHHHHHHHH Confidence 54 5554443 56677778888888999999999998653322 2456776555554444 444445788999988 Q ss_pred HHHHHhcCCCccccceEEecCCCCCCHHHHHH-------HHHHHHhcCCCcHHHHHHhCCCCc---------cHHHH-HH Q lcl|Aclame:pro 369 VKALQIEGESVEDTVDVSFESPDRVTLGEKYS-------AASLAKAAGESWASIRRNILNYNA---------DQIKQ-DD 431 (456) Q Consensus 369 ~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad-------~~~kl~~~g~~s~~t~~~~~~~~~---------~~~~~-~e 431 (456) .+++...... ..++.+.|++-...+.+|.|+ ++.+++++|+++...++..|+-.+ ....+ .+ T Consensus 414 ~ll~~~~~~~-~~~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e 492 (537) T protein:vir:10 414 QLVCRSHLRK-RIRVKVEFPPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAE 492 (537) T ss_pred HHHHHhcCCC-CcceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhh Confidence 8887655443 457899999998899888765 467778889999988877654321 11111 11 Q ss_pred HHHHHHHHHH-----------------HhhcccccccCCCCC Q lcl|Aclame:pro 432 LDRAREQITL-----------------FAGNPVQRPQEDGSR 456 (456) Q Consensus 432 ~~~~~e~~~~-----------------~~~~~~~~~~~~Gs~ 456 (456) .....++... ..+...+.+.+.|++ T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 534 (537) T protein:vir:10 493 DIDVDDEGKPVRIIEDQPAPSEMFGATSSGESANDPRDSGAA 534 (537) T ss_pred cccCCccCCcCCCCCCCCCccccCCCCccccccCCCccCccc Confidence 1001111000 000111223334444 No 92 >protein:vir:108295 Length: 711 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552284;genbank:gi:160700609;genbank:GeneID:5758811 Probab=99.66 E-value=5.2e-15 Score=98.89 Aligned_cols=438 Identities=11% Similarity=-0.021 Sum_probs=207.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHhhccCcccccCcccchhhhhhh-hhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMS-------RVRLLARYSNGDAPLPELTRNTSAAWRSFQ-REARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~-------~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~-~k~~~n~~~~iVd~~~~~l~ 72 (456) -..++..+++.++...+..... ...+-.+||.|++- +......++... ..++.|.++.+|+..+++.. T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw----~~~~~~~l~~~g~p~~~~N~i~~~v~~v~g~~~ 98 (711) T protein:vir:10 23 KNNDDDRALLATARERARDGATYWKDNWEAAEDDLKFLGGEQW----PSQVRTERELEQRPCLVNNVLPTFVDQVLGDQR 98 (711) T ss_pred cCcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCC----CHHHHHHHHhcCCCcEEEcchHHHHHHHhhhHh Confidence 3344445577666665443322 23344789999763 112112222111 14678999999999999998 Q ss_pred cCCcccCC--------------------------CccccHHHH----HHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEe Q lcl|Aclame:pro 73 PNGITVGG--------------------------SADSDLALR----ARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWR 122 (456) Q Consensus 73 g~~~~~~~--------------------------~~d~~~~~~----l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~ 122 (456) -+.+.+.. .+|.+..+. +..+++.|+.+.....+..+++++|.||+-++. T Consensus 99 ~nr~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~af~d~~~~G~G~~ev~~ 178 (711) T protein:vir:10 99 QNRPAIKVSSTEVTRVPDAESGEDTTLKISNVAGKNDYELAEVFTGLIKNIEYNCDAETEYDIAFQGAVESGMGYLRVRS 178 (711) T ss_pred hCCcceEEecccccchhhhhhhhccccccccCCChhHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHhhhcCcceEEEEe Confidence 77554321 122233333 334567789999999999999999999987754 Q ss_pred C---C---CCceEEEEE-ccceEEEEeeCCCCc----eeE-EEEEEEEecC----------------------------C Q lcl|Aclame:pro 123 R---D---DGTATITAD-SPETMVVSVDPLQPW----RIR-AAMRWWRDLD----------------------------A 162 (456) Q Consensus 123 ~---~---~g~~~i~~~-~p~~~~~i~d~~~~~----~~~-~~i~~~~~~~----------------------------~ 162 (456) + + +|+++|+.+ +|.++ +|||.... ... ++.+.|.+.+ . T Consensus 179 d~~~~d~~~~e~~i~~v~~p~~v--~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~yp~~a~~~~~~~~~~~~~~~~~~~ 256 (711) T protein:vir:10 179 DYLADDSFEQDLIIEAIQNQFSV--TIDPDAKKRDRSDMNWCLIDDTMSKEKFKALYPDATAEPVYEDSVADYDTWFTEK 256 (711) T ss_pred cccCCCCCCCCeEEeeecChhhe--eeCccccccChhhhcceeeeecCCHHHHHHhCCchhhhhhhcccccccCcccCcc Confidence 3 2 578888777 68774 66664321 111 2222222110 0 Q ss_pred ceeEEEEEeCCeEE-EEEEccc---ccccc----------------------c---ceeeccCCCcccccccccccCcee Q lcl|Aclame:pro 163 ESDFAIVWSGDGWQ-KFARPCF---VQSSS----------------------R---RRLVTRISDSWVPVGDAVVTGSPP 213 (456) Q Consensus 163 ~~~~~~~~~~~~~~-~~~~~~~---~~~~~----------------------~---~~~~~~~~~~~~~~~~~~~~~~~~ 213 (456) ......+|...... ++..... .+... . ++... .|........+...+.+ T Consensus 257 ~vrv~E~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v~~~~~--~G~~~L~~~~p~~~~~~ 334 (711) T protein:vir:10 257 SVRVSEYFTREPVIREIALLSDGRSFWLDALEDIVDELLEAGISIVRTRKVKTFKTYWRKI--TGANVLEGPVEIPSTTI 334 (711) T ss_pred eeeEEEEEeeeeeeeEEEeecCCceeccCcchhHHHHHHhcCchhhhhhhhceeeEEEEEE--ecceeecCCCCCCCCcc Confidence 00111122111100 0000000 00000 0 00001 11111222233334555 Q ss_pred EEEEec--------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh-cCCCccccccccchhhhhhhhhhhhh Q lcl|Aclame:pro 214 PVVVYQ--------NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRAL-KSTEHGLPNVDENGNAIDYASIFEAA 284 (456) Q Consensus 214 pv~~~~--------n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i-~G~~~~~~~~d~~g~~~~~~~~~~~~ 284 (456) |++++. ...+.|.+..+++.++.+|...|.+...+...+.+..++ .|...+. ++. ....... T Consensus 335 P~vp~~g~r~~~d~~~~~~G~vr~~~d~Qr~~N~~~s~~~~~l~~~~~~~~~~~~gai~~~---~~~------~~e~~~~ 405 (711) T protein:vir:10 335 PVIPVWGKSLIIKKKEIFRSIIRHSKDAQRMANYWDSAATETVALAPKAPFIGSEGNVEGR---EDE------WEQANTK 405 (711) T ss_pred cEEEEeeeeeccccccccchhhhhhhhhHHHHHHHHHHHHHHHHhcCCCceeecCcccCCh---HHH------HHhcccc Confidence 655431 112457788999999999999999998877666654333 2321110 000 0001133 Q ss_pred ccceeecCCCc----ceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 285 PGALWELPPGV----DIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSI 359 (456) Q Consensus 285 ~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~ 359 (456) ++.++..+++. .+...+..+ ...+...+......|-..||+.+..+|..+++.||+|+......-.......... T Consensus 406 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~i~~~tGi~~~~~G~~~n~~Sg~ai~~~q~qg~~~l~~~~dn 485 (711) T protein:vir:10 406 NFSLLTYIPQYQGDPGPRRQPPAAVPAAELTLGQNSVEKIKSTMGMYDASLGAMGNETSGRAIIARQRQGDRGSFAFIDN 485 (711) T ss_pred CCCeeEecccccCcCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCChHHcCCCccchHHHHHHHHHHHHHHHHHHHHHH Confidence 45555544433 222222222 2456666777777777889999999998877789999999888877777777777 Q ss_pred HHHHHHHHHHHHHHh----c---------CCCccccceEEecC--------------------------CCCCC---HHH Q lcl|Aclame:pro 360 AKIGLEAILVKALQI----E---------GESVEDTVDVSFES--------------------------PDRVT---LGE 397 (456) Q Consensus 360 f~~~l~~~~~l~~~~----~---------g~~~~~~i~v~f~~--------------------------~~~~~---~~e 397 (456) |..+++++.++++.+ . |...... .+.++. ..|.+ ..+ T Consensus 486 ~~~~~~~~g~~ll~li~~~~~~er~~rI~ged~~~~-~v~ln~~~~~~~~G~~~~~nDi~~g~~Dv~i~~~p~~~s~r~~ 564 (711) T protein:vir:10 486 LTKSIRRVGKILVEMIPHIYDTERVVRLKFPDETED-FVKLNEQIFDEESGEWVTIHDLNVQKYDVVVTTGPAFATQRIE 564 (711) T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCcc-eEEecccccccccccceeeeccceeeeEEEEeeccCchhHHHH Confidence 777777776665542 1 2100000 011211 11111 122 Q ss_pred HHHHHHHHHhc----------------CCCcHHHHHHh----CCC---CccHHHHH---HHHHHH--H--HH-----HH- Q lcl|Aclame:pro 398 KYSAASLAKAA----------------GESWASIRRNI----LNY---NADQIKQD---DLDRAR--E--QI-----TL- 441 (456) Q Consensus 398 ~ad~~~kl~~~----------------g~~s~~t~~~~----~~~---~~~~~~~~---e~~~~~--e--~~-----~~- 441 (456) .+..++.+.+. +++..+...+. .+- .+++..+. .++..+ . +. .. T Consensus 565 ~~~~l~ql~~~~p~~~~~~~~~il~~~d~p~~~el~e~lr~~~~~~~~~~~~~~~~qq~~~e~qq~~~~~q~~~~~~q~~ 644 (711) T protein:vir:10 565 AAEAMIQFAQAVPSAAAVMADLIAQNMDWPGADVIAERLKKIVPPNVLSKDEREAIEEDMPEQTEPTPEQQVEMAKSQAD 644 (711) T ss_pred HHHHHHHHHhhcchhhhHHHHHHHHhcCCCCHHHHHHHHHhhcCcccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 33333333221 11111111111 110 00000000 000000 0 00 00 Q ss_pred --HhhcccccccCCCCC Q lcl|Aclame:pro 442 --FAGNPVQRPQEDGSR 456 (456) Q Consensus 442 --~~~~~~~~~~~~Gs~ 456 (456) .+.......+.+-+| T Consensus 645 ~~qa~ae~~~Aqae~~q 661 (711) T protein:vir:10 645 MAQAEADTAQAQADMLK 661 (711) T ss_pred HHHHHHHHHHHHHHHHH Confidence 000000000111011 No 93 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.63 E-value=9.1e-16 Score=103.04 Aligned_cols=384 Identities=13% Similarity=0.072 Sum_probs=187.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc----cccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPL----PELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i----~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) |+ +.+-+....-|-++- .+........+.... ..+.+++++||..+.-++.+++ T Consensus 1 ~~--------------------~~D~~~n~~~gg~~~~~~~~~~~~~~~~~l~a~Y--~~~~l~~~~Vd~~aed~~r~g~ 58 (422) T protein:vir:10 1 MV--------------------KTDSYANIFLGGSDGSEIYGSLQNQAPTILASLY--ADNALVRRIIDTIPETALAAGF 58 (422) T ss_pred Cc--------------------cchhhHHHHcCCCCCccccCcccccCHHHHHHHH--HhChhhHHHHhhhhHHHhcCCc Confidence 11 111121122221110 000001111222221 2356889999999999999999 Q ss_pred ccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCC----------Cce-EEEEEccceEEEEeeCC Q lcl|Aclame:pro 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDD----------GTA-TITADSPETMVVSVDPL 145 (456) Q Consensus 77 ~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~----------g~~-~i~~~~p~~~~~i~d~~ 145 (456) .+.+.++. ..+...|++=++...+.++.+.+..||.|++++-..+. |.+ .+.++++.++.|..-.. T Consensus 59 ~i~~~~~~---~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~ 135 (422) T protein:vir:10 59 HIDGIDDE---PAFWSRWDDLEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREE 135 (422) T ss_pred cccCCCHH---HHHHHHHHHhhHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhccc Confidence 99765443 24556677667888999999999999999998876322 111 23344444433321000 Q ss_pred CCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCcee-E-E-EEecCCC Q lcl|Aclame:pro 146 QPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPP-P-V-VVYQNPD 222 (456) Q Consensus 146 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p-v-~~~~n~~ 222 (456) +.... ..+..... .+...... . +..+......++-+.+ | + -+.++-+ T Consensus 136 dp~s~---------~fg~P~~y---------~v~~~~~~---~---------~~~iH~SRli~~~g~~~p~~~~~~~~~~ 185 (422) T protein:vir:10 136 NPRNA---------RFGEPLTY---------RITTNESD---M---------FYDVHYSRIHIIDGERIPNVMRRQNDGW 185 (422) T ss_pred Ccccc---------ccCcceEE---------EEecCCCC---c---------ceeeccceeEEeCCCCchhhhcccCCcc Confidence 00000 00111111 11000000 0 0000000000110110 1 0 0123446 Q ss_pred CCchHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhh---hhhccceeecCCCccee Q lcl|Aclame:pro 223 GMGEVEP-HIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIF---EAAPGALWELPPGVDIW 298 (456) Q Consensus 223 ~~s~~~~-v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~ 298 (456) |.|.++. +.+-+.+++++.-.....+..+......+.|........+...........+ ....+.+...+.+.++. T Consensus 186 G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e 265 (422) T protein:vir:10 186 GRSVLSSDILDSIKDYTNCERLATQLLKRKQQAVWKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYS 265 (422) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceE Confidence 8888876 5576777777665544444333333222222111000001111111111111 11223344444455554 Q ss_pred eccccchHHHHHHHHHHHHHHHhhcCCChhhhcccc-c--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 299 ESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-A--NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE 375 (456) Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~--n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~ 375 (456) +++ .++++..+.+....++|++.+++|...+.+.+ + |.||+.-..-|...+.- ..+..+++.+++++.+++.- T Consensus 266 ~~~-~~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~Glnatgd~d~~~yyd~i~~--~Qe~~l~p~l~~l~~~i~~s- 341 (422) T protein:vir:10 266 VLN-SDIGGIDAFLDKKFDRIVALSGIHEIILKNKNVGGVSSSQNTALETFHKLVDR--KRNAELLPILEFLIPFIVNA- 341 (422) T ss_pred EEe-cccCChHHHHHHHHHHHHhhhCCCeeeeccCCcccccccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc- Confidence 443 55666778888899999999999997664432 2 34566554444443332 22356788888888886531 Q ss_pred CCCccccceEEecCCCCCCHHHHHH-------HHHHHHhcCCCcHHHHHHhCCCC------ccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 376 GESVEDTVDVSFESPDRVTLGEKYS-------AASLAKAAGESWASIRRNILNYN------ADQIKQDDLDRAREQITLF 442 (456) Q Consensus 376 g~~~~~~i~v~f~~~~~~~~~e~ad-------~~~kl~~~g~~s~~t~~~~~~~~------~~~~~~~e~~~~~e~~~~~ 442 (456) .++.+.|+|-..++..|.|+ ++++++++|+++.+.+++.|.-. .+...+.+.+..+ . T Consensus 342 -----~~~~~~f~pL~~~sekekaei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~~~-----~ 411 (422) T protein:vir:10 342 -----EEWSVEFNPLAQESSKDKAEILEKNVNSIAALIAAGAMDIDEARDTLRTIAPEVKINDGSVETEVTISE-----T 411 (422) T ss_pred -----CCcEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhcccccCCCCCCccccchhh-----c Confidence 36789999988888887554 55667788999987777655211 1111111111111 1 Q ss_pred hhcccccccCC Q lcl|Aclame:pro 443 AGNPVQRPQED 453 (456) Q Consensus 443 ~~~~~~~~~~~ 453 (456) ...+.+.|.+| T Consensus 412 ~~~~~~~~~~d 422 (422) T protein:vir:10 412 SNDPLEVPTDD 422 (422) T ss_pred CCCCCCCCCCC Confidence 24555666666 No 94 >protein:vir:105619 Length: 772 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164304;genbank:gi:56692922;genbank:GeneID:3197230 Probab=99.62 E-value=4.2e-15 Score=99.41 Aligned_cols=436 Identities=11% Similarity=-0.001 Sum_probs=196.9 Q ss_pred CCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhccCcccccCcccchhhhhh-hhhhcCChHHHHHHHHHHhhhcCCcc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTK--RIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSF-QREARTNWGLMVRDSVADRIIPNGIT 77 (456) Q Consensus 1 ~~~~t~~~~~~~l~~--~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~-~~k~~~n~~~~iVd~~~~~l~g~~~~ 77 (456) ...++...+...+.. +...-+..-.+-.+||.|++- +.+....++.. ...++.|.++.+|+..+++..-+.+. T Consensus 19 ~~~~~~~~~~~~~~~~~~q~~~r~~a~~d~~fy~G~QW----~~~~~~~l~~~g~p~~~~N~i~~~v~~v~g~~~~nr~d 94 (772) T protein:vir:10 19 DTPLTVDEYADINYEIEDQPAWRAVADKEMDYADGNQL----DTELLRRQQALGIPPAVEDLIGPALLSLQGYEAVTRTD 94 (772) T ss_pred ccccCHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCCC----CHHHHHHHHhcCCCcEEEcchHHHHHHHHHHHHhcCcc Confidence 445555554443322 122222333456789999863 11211111111 11477899999999999999887654 Q ss_pred cCC-----CccccHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCC---CceEEEEEccceEEEEeeCC Q lcl|Aclame:pro 78 VGG-----SADSDLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDD---GTATITADSPETMVVSVDPL 145 (456) Q Consensus 78 ~~~-----~~d~~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~---g~~~i~~~~p~~~~~i~d~~ 145 (456) +.. .+|.+..+ .+..+++.|+++..+..++.+++++|.||+-++.+.| +.++|..++|.+ ++||+. T Consensus 95 ~~v~Pr~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~Gw~e~~~~~d~~~~~i~i~~v~p~~--v~~Dp~ 172 (772) T protein:vir:10 95 WRVTPNGDVGGQEVADALNYRLNTAERQSGADRACSEAFRPQIACGIGWVEVSRESDPFKFPYRCRPIRRDE--IHWDMK 172 (772) T ss_pred eEEecCCCchHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhhcCceeEEeccccCCCCCCeEEEeeCccc--ceecCC Confidence 421 12222222 2445677899999999999999999999999887654 357899999988 566765 Q ss_pred CCceeEE---E-EEEEEecC------------------------------------------------------------ Q lcl|Aclame:pro 146 QPWRIRA---A-MRWWRDLD------------------------------------------------------------ 161 (456) Q Consensus 146 ~~~~~~~---~-i~~~~~~~------------------------------------------------------------ 161 (456) .+..+.- + +..|.+.+ T Consensus 173 a~~D~sDar~~~~~~~~~~d~~~~~fp~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (772) T protein:vir:10 173 CGDDWEACRFLRRQRWLSPDRIALVFPEHAELIGMVGKYGSTWWGQPDLGMMEGGTSTGLHNAWNEARAWTVQEDHWYNP 252 (772) T ss_pred CCCCHHHhhhhhhhccCCHHHHHHhCCCchhHHHhhhhhcccccCcccccccccccccccccccchhhcccccccccccc Confidence 4321111 1 11110000 Q ss_pred --CceeEEEEEeCCeEEEEEEccccccccc---------------------------ceeeccCCCcccccccccccCce Q lcl|Aclame:pro 162 --AESDFAIVWSGDGWQKFARPCFVQSSSR---------------------------RRLVTRISDSWVPVGDAVVTGSP 212 (456) Q Consensus 162 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 212 (456) ....-+.+|........+.......... ++.+..+.. ....+..+...+. T Consensus 253 ~~~rVrv~E~w~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~~~~~~~~~rv~~~~~~g~~-~L~~~~~p~~~~~ 331 (772) T protein:vir:10 253 TSKEICLVELWYRRWVQVHVLKSPDGRVVEYDPNNLAHNIALASGRISPKKVTVSRVRRSYWLGPH-CLHDGPTPYTHRH 331 (772) T ss_pred CCceEEEEEEeeeeeeeeeeeccCCCceEeeCcccHHHHHHHhhcccchheeeeeEEEEEEEecce-eeccCCCCCCCCc Confidence 0000111121111000000000000000 000111111 1111222222233 Q ss_pred eEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhcc Q lcl|Aclame:pro 213 PPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPG 286 (456) Q Consensus 213 ~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~ 286 (456) +|+|++ ......|-+..+++.++.+|...|.+...+.-.. ++ ...+.+... +.. + .. .-..++ T Consensus 332 fP~vP~~g~r~~~~g~~~G~vr~~kd~Qr~~N~~~S~~~~~l~~~~----~~--~~~gav~~~-d~~-~--~e-~~arp~ 400 (772) T protein:vir:10 332 FPYVPFFGFREDATGIPYGYVRGMKYAQDSLNSGVSKLRWGMSVAR----VE--RTKGAVAMT-DAQ-F--RR-QIARPD 400 (772) T ss_pred cceEEEeeeEeccCCcccchhhhhhhHHHHHHHHHHHHHHHHhccc----cc--ccCCCccch-hHH-H--HH-hccCCC Confidence 444433 1112347788999999999999998776543322 21 222211110 000 0 00 011223 Q ss_pred ceeecCC------Ccceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 287 ALWELPP------GVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSI 359 (456) Q Consensus 287 ~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~ 359 (456) .+...++ +..+...+... ...+...++.....|-.+||+.+..+|..++..||+|+......-.......... T Consensus 401 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGv~~~~lG~~~na~SGvAi~~rq~qg~~~l~~~~Dn 480 (772) T protein:vir:10 401 ADIVLDENHMAKPGARFDVKRDYTLTDQHFQMLQDNRATIERVSNITAGFQGRKGTATSGIQEQQQIEQSNQSIGRIMDN 480 (772) T ss_pred CeEEeCCccccCCCCCccccCCccccHHHHHHHHHHHHHHHHHhCCCHHHcCCCcchhhHHHHHHHHHHHHHHHHHHHHH Confidence 3333332 23332222222 3567788888888888999999999997766679999987766655555566666 Q ss_pred HHHHHHHHHHHHHHh----cCCC--------cc----c--------------------cceE-Eec---CCCCCCH---H Q lcl|Aclame:pro 360 AKIGLEAILVKALQI----EGES--------VE----D--------------------TVDV-SFE---SPDRVTL---G 396 (456) Q Consensus 360 f~~~l~~~~~l~~~~----~g~~--------~~----~--------------------~i~v-~f~---~~~~~~~---~ 396 (456) +..+.+++.++++.+ .+.. +. . +|.+ .+. +..|.+. . T Consensus 481 l~~~~~~~g~~lL~li~~~y~~er~~RI~~~d~~~~~~~v~in~~~~d~~tg~~~~~NDi~~g~yDv~i~~~p~~~t~r~ 560 (772) T protein:vir:10 481 FRAGRTLVGELLLAMIVEDIGQERTEVVIEGDAVTADRVVVLNEPQRDPQTGAAYLSNDLLRTRIKVALEDVPSTNSYRG 560 (772) T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCCCCceEEeccceecccccccceeccceeeeEEEEeeccccchHHHH Confidence 667766665555432 1110 00 0 0000 000 0112222 2 Q ss_pred HHHHHHHHHHhcCCCcHHH-------HHHhCCCC-ccHHH-HHH------------HHHHHH---HHHHH-hhcc----- Q lcl|Aclame:pro 397 EKYSAASLAKAAGESWASI-------RRNILNYN-ADQIK-QDD------------LDRARE---QITLF-AGNP----- 446 (456) Q Consensus 397 e~ad~~~kl~~~g~~s~~t-------~~~~~~~~-~~~~~-~~e------------~~~~~e---~~~~~-~~~~----- 446 (456) +.++.++.+... +.+ ++ +++.+.+. .+++. ++. ++..+. +.... ++.. T Consensus 561 ~~~~~m~ql~~~-~~P-~~~~~~~~~~le~~D~p~~~ei~~~ir~~~~~~~peq~~~~~~q~~qq~~~~~~~el~~~q~~ 638 (772) T protein:vir:10 561 QQLNAMSEAVKS-MPP-QYQAAVLPFLVSLMDVPFKRDVVEAIRAVDQQQTPEQIQQQIDQAVQDALAKAGNDIKLRELE 638 (772) T ss_pred HHHHHHHHHHhc-cCh-hHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 334444444322 121 11 11222221 01111 110 000000 00000 0000 Q ss_pred c------ccccCCCCC Q lcl|Aclame:pro 447 V------QRPQEDGSR 456 (456) Q Consensus 447 ~------~~~~~~Gs~ 456 (456) + .......+| T Consensus 639 a~~~~~~A~a~~~~aq 654 (772) T protein:vir:10 639 IKERKADSEISGLNAK 654 (772) T ss_pred HHHHHHHHHHHHHHHH Confidence 0 000000001 No 95 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.62 E-value=1.1e-15 Score=102.69 Aligned_cols=407 Identities=13% Similarity=0.048 Sum_probs=191.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH------------HHHHHhhccCcc---cc-cCcccch-hhhhhhhhhcCChHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVR------------LLARYSNGDAPL---PE-LTRNTSA-AWRSFQREARTNWGLMV 63 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~------------~~~~YY~g~~~i---~~-~~~~~~~-~~~~~~~k~~~n~~~~i 63 (456) |-+---..-...++..|...-+.+. ....+..|.+.. -+ .+..... ++-... ..+.+++++ T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~a~Y--~~~~l~r~~ 100 (532) T protein:vir:94 23 VDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGFPTLALL--AQLPEYRTM 100 (532) T ss_pred hhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCcccccccccccccccccchHHHHHHH--HcCchhhhh Confidence 1110000001111111111100000 000011111000 00 0001110 111111 235577999 Q ss_pred HHHHHHhhhcCCcccCCCccc----cHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce----------- Q lcl|Aclame:pro 64 RDSVADRIIPNGITVGGSADS----DLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA----------- 128 (456) Q Consensus 64 Vd~~~~~l~g~~~~~~~~~d~----~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~----------- 128 (456) ||..+.-++-+++.+....+. +....+...|++=++...+.++.+.+..||.|++++..+.+|.. T Consensus 101 Vd~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~~ 180 (532) T protein:vir:94 101 HETPADECVRAWGKITCSSKDELAADKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLSP 180 (532) T ss_pred hccchHHHhhCCceEeeCCccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEEEEeccCCccccccccccccc Confidence 999999999999998654332 33445666676667888889999999999999988766543321 Q ss_pred ---------EEEEEccceEEEE-eeCCCCceeEEEEEEEEecCCceeEEEE-----EeCCeEEEEEEcccccccccceee Q lcl|Aclame:pro 129 ---------TITADSPETMVVS-VDPLQPWRIRAAMRWWRDLDAESDFAIV-----WSGDGWQKFARPCFVQSSSRRRLV 193 (456) Q Consensus 129 ---------~i~~~~p~~~~~i-~d~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 193 (456) .+.+++|.++.|- ++..+.... ..+...+..+ +.+.++.+| T Consensus 181 ~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp---------~fg~P~~y~v~~g~~iH~SRli~f--------------- 236 (532) T protein:vir:94 181 SFVQRGCLIGFATIEPMWLSPNAYNATDPTLP---------SFYKPDSWIATSGKKIHSSRIHTV--------------- 236 (532) T ss_pred cccccceeeEEEeechheeccccccccccccc---------ccCCceeEEEccCeeeccceEEEe--------------- Confidence 1333334333332 110000000 0011111111 111111111 Q ss_pred ccCCCcccccccccccCcee-EEE--EecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccccc Q lcl|Aclame:pro 194 TRISDSWVPVGDAVVTGSPP-PVV--VYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDE 270 (456) Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~-pv~--~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~ 270 (456) .+.+ |-. ...|=+|.|.++.+..-+..++++.-.....+..+... +++ .+.......+ T Consensus 237 ----------------~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~--v~k-~~~a~~ls~~ 297 (532) T protein:vir:94 237 ----------------VGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFSMT--NLA-TDMAQLLAPG 297 (532) T ss_pred ----------------cCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--eee-echHHhhcch Confidence 1100 000 01223589999999888888888776655444433332 222 1111111111 Q ss_pred chhhh-hhhhhhhh--hccceeecCC-CcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccc-c--cchHHHHH Q lcl|Aclame:pro 271 NGNAI-DYASIFEA--APGALWELPP-GVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-A--NQSAEGAH 343 (456) Q Consensus 271 ~g~~~-~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~--n~Sg~Al~ 343 (456) ....+ .....+.. ....++.++. +.++.+++ .+++...+.+....++|++.+++|...|-+.+ + |.+|+.-. T Consensus 298 ~~~~~~~r~~~~~~~~~n~g~~~id~~~e~~e~~~-~~lsgl~~~l~~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~ 376 (532) T protein:vir:94 298 GAQSLDARLQLFNLYRDNRNIGALDKGTEEIQQTN-TPLSGLDSLQAQSQEQMAAVSHIPLVKLLGITPNGLNASSDGEI 376 (532) T ss_pred hHHHHHHHHHHHHhhcCCccceEEcCCCceeEEEe-cccCCHHHHHHHHHHHHHhHhCCCeeeeecCCcccccccchHHH Confidence 11111 11111211 1223455553 35555554 55667778888889999999999987653332 2 45666544 Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHH-------HHHHHHhcCCCcHHH Q lcl|Aclame:pro 344 NIEKGFLFKCEDRL-SIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS-------AASLAKAAGESWASI 415 (456) Q Consensus 344 ~~~~~l~~k~~~~~-~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad-------~~~kl~~~g~~s~~t 415 (456) .-|.. .|+.+| ..+.+.+++++++++....-....++.+.|++-...+.+|.|+ +..+++++|+++.+. T Consensus 377 ~~yyd---~I~s~Qe~~l~p~le~l~~~l~~s~~g~~~~d~~~~f~pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~E 453 (532) T protein:vir:94 377 RVWYD---FIAGYQATNLTPLMEWIIDLIQLSEYGQIDPGLAWEWSPLMELDDKELAEVRQLNASTDSTLMELGVIDAKM 453 (532) T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH Confidence 44433 344444 5567888888888765443333456899999988888887655 456677889999988 Q ss_pred HHHhCCCCcc------HHHH--H-HHHHHHHHHHHHhhc-ccc-----cccCCCCC Q lcl|Aclame:pro 416 RRNILNYNAD------QIKQ--D-DLDRAREQITLFAGN-PVQ-----RPQEDGSR 456 (456) Q Consensus 416 ~~~~~~~~~~------~~~~--~-e~~~~~e~~~~~~~~-~~~-----~~~~~Gs~ 456 (456) +++.++..+. ...+ + +.+...++...-... +.. .|..+++- T Consensus 454 vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (532) T protein:vir:94 454 VQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPNPQPDSED 509 (532) T ss_pred HHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCCCCCC Confidence 8877764432 1111 1 111111111111111 111 11111111 No 96 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.60 E-value=1.3e-15 Score=102.16 Aligned_cols=389 Identities=11% Similarity=0.039 Sum_probs=188.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc----ccCcc-cchhhhhhhhhhcCChHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP----ELTRN-TSAAWRSFQREARTNWGLMVRDSVADRIIPNG 75 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~----~~~~~-~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~ 75 (456) |+.-. ....+-+-+.....+.-... ..... ....+.... ..+.+++++||..+.-++.++ T Consensus 5 m~~~~-------------~~~~~~D~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Y--~~~~l~~~~Vd~~aed~~r~g 69 (435) T protein:vir:79 5 MSDKV-------------KAITKEDGYNEIFGSKDGTFRPNAFYMQRAAFKALSQFY--EEDGMARRIVDVIPEEMVTPG 69 (435) T ss_pred ccccc-------------ccchhhcchhhhhcccccccccCcccCCcCCHHHHHHHH--hcCchhhhhhccchHHhhcCC Confidence 44321 00111111222222221110 00000 111121221 235688999999999999999 Q ss_pred cccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCC----------ce-EEEEEccceEEEEeeC Q lcl|Aclame:pro 76 ITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDG----------TA-TITADSPETMVVSVDP 144 (456) Q Consensus 76 ~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g----------~~-~i~~~~p~~~~~i~d~ 144 (456) +.+.++++. ..+...|++=++...+.++.+.+..||.|++++-..+.. .+ .+.+++|.++.|-. T Consensus 70 ~~i~g~~~~---~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~-- 144 (435) T protein:vir:79 70 FKVDGVKNE---KSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHE-- 144 (435) T ss_pred ceecCCChH---HHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccchh-- Confidence 998765443 346667776678888999999999999999888653221 11 23333333332211 Q ss_pred CCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCcee-EEE--EecCC Q lcl|Aclame:pro 145 LQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPP-PVV--VYQNP 221 (456) Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv~--~~~n~ 221 (456) +..+.. .-.++.|. .|.+.... ... +..+......++-+.+ |-. +..|- T Consensus 145 -----------~~~dp~----sp~fg~P~-~y~v~~~~---~~~---------~~~iH~SRli~~~g~~~p~~~~~~~~~ 196 (435) T protein:vir:79 145 -----------RETNAR----SVRYGEPK-LYKISPGG---DIP---------EFFVHYSRICIIDGERVSNEKRRQNDG 196 (435) T ss_pred -----------hccCCc----ccccCcce-EEEEecCC---CCC---------ceEEcceeEEEecCCcchhhhccccCc Confidence 000000 00001110 11110000 000 0000000111111111 100 12345 Q ss_pred CCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchh-----hhhhhhhhhhhccceeecCCCc Q lcl|Aclame:pro 222 DGMGEV-EPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGN-----AIDYASIFEAAPGALWELPPGV 295 (456) Q Consensus 222 ~~~s~~-~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~-----~~~~~~~~~~~~~~~~~~~~~~ 295 (456) +|.|.+ +.+.+-+.+++++.......+..+......+.|... ...+..+. .+..........+.+.....+. T Consensus 197 ~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~v~~~~~l~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e 274 (435) T protein:vir:79 197 WGASILNKRLIEAIVDYNYCQELATQLLRRKQQAVWKARDLAL--MCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDE 274 (435) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHH--hhcCccchHHHHHHHHHHHHhcCCCCceeEecCCc Confidence 677766 677787788887766655544433333222222211 11111111 1111111122233344444555 Q ss_pred ceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccc-cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 296 DIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPD-SA--NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKAL 372 (456) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~-~~--n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~ 372 (456) ++.+++ .++++..+.+....++|++.+++|...+.+. .+ |.||+.-..-|...+... .+..+.+.+++++++++ T Consensus 275 ~~e~~~-~~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~yyd~i~~~--Qe~~l~p~l~~l~~li~ 351 (435) T protein:vir:79 275 EYEVLN-SDVSGVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETFYKLIDRK--RVEDYKPILEFLLPFMI 351 (435) T ss_pred ceEEEe-cccCCHHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh Confidence 555443 5566777888899999999999999665433 22 456765544444444332 24667888888888765 Q ss_pred HhcCCCccccceEEecCCCCCCHHHHHH-------HHHHHHhcCCCcHHHHHHhC-------CCCccHHHHHHHHHHHHH Q lcl|Aclame:pro 373 QIEGESVEDTVDVSFESPDRVTLGEKYS-------AASLAKAAGESWASIRRNIL-------NYNADQIKQDDLDRAREQ 438 (456) Q Consensus 373 ~~~g~~~~~~i~v~f~~~~~~~~~e~ad-------~~~kl~~~g~~s~~t~~~~~-------~~~~~~~~~~e~~~~~e~ 438 (456) .- .++.+.|+|-..++..|.|+ +++++.++|+++.+.+++.+ |+..+...+++ +. T Consensus 352 ~s------~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~-----~~ 420 (435) T protein:vir:79 352 SE------TEWSIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQAINLKETRDTLRSICPDLKIMDNDNIELP-----EP 420 (435) T ss_pred cC------CCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccccCCCCcccccCC-----cc Confidence 32 46789999999899877655 45556677888877665543 22222212111 00 Q ss_pred HHHHhhcccccccCCCCC Q lcl|Aclame:pro 439 ITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 439 ~~~~~~~~~~~~~~~Gs~ 456 (456) ....+.+.+..++-+ T Consensus 421 ---~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 421 ---EDLDPEPGQEGGLNK 435 (435) T ss_pred ---ccCCCCCCCCCCCCC Confidence 011222222333344 No 97 >protein:vir:2764 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612881;genbank:gi:20065798;genbank:GeneID:935623 Probab=99.60 E-value=6.8e-14 Score=92.76 Aligned_cols=439 Identities=12% Similarity=0.048 Sum_probs=195.9 Q ss_pred CCCCCHHH----HHHHHHHHHHHH-------HHHHHHHHHHhhccCcccccCcccchhhhhh-hhhhcCChHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAE----WLPVLTKRIDDG-------MSRVRLLARYSNGDAPLPELTRNTSAAWRSF-QREARTNWGLMVRDSVA 68 (456) Q Consensus 1 ~~~~t~~~----~~~~l~~~~~~~-------~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~-~~k~~~n~~~~iVd~~~ 68 (456) |.+-...+ +.+++...+... +....+-.+||.|++-- ......+... ...++.|.++.+|+..+ T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~----~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:27 8 MATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP----PEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC----HHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 44332222 223333333222 22334557899997631 1211111111 12477899999999999 Q ss_pred HhhhcCCcccCC---C-ccc--cHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC---CCceEEEEEcc Q lcl|Aclame:pro 69 DRIIPNGITVGG---S-ADS--DLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD---DGTATITADSP 135 (456) Q Consensus 69 ~~l~g~~~~~~~---~-~d~--~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~---~g~~~i~~~~p 135 (456) ++..-+.+.+.. . ++. +..+ .+..+++.|+.+.....++.+++++|.||+-++.+. +++++|..++| T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:27 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 999877654321 1 111 2222 345567778999999999999999999999888764 35678999999 Q ss_pred ceEEEEeeCCCCc----ee-EEEEEEEEecCC--------------------------------c--------------- Q lcl|Aclame:pro 136 ETMVVSVDPLQPW----RI-RAAMRWWRDLDA--------------------------------E--------------- 163 (456) Q Consensus 136 ~~~~~i~d~~~~~----~~-~~~i~~~~~~~~--------------------------------~--------------- 163 (456) .++ +|||.... .. .++++.|.+.+. . T Consensus 164 ~~v--~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (714) T protein:vir:27 164 NEV--FWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQ 241 (714) T ss_pred hhe--eeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccc Confidence 985 45543211 11 112222211000 0 Q ss_pred --------eeEE---EEEeCCeEEEEEEcccc------ccc-------------------ccceeeccCCCc-ccccccc Q lcl|Aclame:pro 164 --------SDFA---IVWSGDGWQKFARPCFV------QSS-------------------SRRRLVTRISDS-WVPVGDA 206 (456) Q Consensus 164 --------~~~~---~~~~~~~~~~~~~~~~~------~~~-------------------~~~~~~~~~~~~-~~~~~~~ 206 (456) ..++ .+|........+..... +.. ..+..+....+. ....+.. T Consensus 242 ~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~~~~ 321 (714) T protein:vir:27 242 QNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVDRPC 321 (714) T ss_pred ccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCcccccCCC Confidence 0001 11111000000000000 000 000000000011 1111112 Q ss_pred cccCceeEEEEe---c-CC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhh Q lcl|Aclame:pro 207 VVTGSPPPVVVY---Q-NP--DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASI 280 (456) Q Consensus 207 ~~~~~~~pv~~~---~-n~--~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~ 280 (456) |...+.+|++++ . .. ...|-+..+++.++.+|...|.....+ .+....+..|.. +..++ .+ .. T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~---~~~d~---~~--~e- 390 (714) T protein:vir:27 322 SAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDAT---QLSDN---DL--ME- 390 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcc---cccHH---HH--HH- Confidence 222233444433 1 11 124677889999999999988876543 222221111211 10110 00 00 Q ss_pred hhhhccceeecCCCcc--------eeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 281 FEAAPGALWELPPGVD--------IWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLF 351 (456) Q Consensus 281 ~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ 351 (456) .-..++.+...+++.+ +...+.. ....+...+......|-.+||+.+..+|..+++.||+|+......-.. T Consensus 391 ~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~ 470 (714) T protein:vir:27 391 QIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGAT 470 (714) T ss_pred hccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHH Confidence 0122333433333322 2222222 235567777777888888899999999987777899999988876666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcC---------CCccccc--eEEe----------c-----------CCCCCC- Q lcl|Aclame:pro 352 KCEDRLSIAKIGLEAILVKALQ----IEG---------ESVEDTV--DVSF----------E-----------SPDRVT- 394 (456) Q Consensus 352 k~~~~~~~f~~~l~~~~~l~~~----~~g---------~~~~~~i--~v~f----------~-----------~~~~~~- 394 (456) ........+..+.+++.++++. +.+ ..+.... .+.- + +..|.+ T Consensus 471 ~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~ 550 (714) T protein:vir:27 471 TLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTP 550 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCch Confidence 5556666666666666655543 211 1110000 0000 0 111222 Q ss_pred --HHHHHHHHHHHHhc-----CCCcHHHHHHhCCCCc-cHHHH-H------------------HHHHHHHHH-------- Q lcl|Aclame:pro 395 --LGEKYSAASLAKAA-----GESWASIRRNILNYNA-DQIKQ-D------------------DLDRAREQI-------- 439 (456) Q Consensus 395 --~~e~ad~~~kl~~~-----g~~s~~t~~~~~~~~~-~~~~~-~------------------e~~~~~e~~-------- 439 (456) ..+.+++++.+.+. +...-..+++.+.+.- +++.+ + .++...+++ T Consensus 551 t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~~~~~q~~lq 630 (714) T protein:vir:27 551 AFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQALQQQQAELQ 630 (714) T ss_pred HHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCCCCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHHHHHHH Confidence 23445555555432 1112233444444310 11100 0 000000000 Q ss_pred -HHHhh-cccccccCCCCC Q lcl|Aclame:pro 440 -TLFAG-NPVQRPQEDGSR 456 (456) Q Consensus 440 -~~~~~-~~~~~~~~~Gs~ 456 (456) ..+.. ...-......++ T Consensus 631 ~~~~~a~~~k~eae~~~a~ 649 (714) T protein:vir:27 631 MREMAGRVAKLEADAARAH 649 (714) T ss_pred HHHHHHHHHHHHHHHHHHH Confidence 00000 000000000011 No 98 >protein:vir:3296 Length: 714 # NCBI annotation: putative portal protein # Family: family:all:487 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049512;genbank:gi:9632518;genbank:GeneID:1262005 Probab=99.60 E-value=6.8e-14 Score=92.76 Aligned_cols=439 Identities=12% Similarity=0.048 Sum_probs=195.9 Q ss_pred CCCCCHHH----HHHHHHHHHHHH-------HHHHHHHHHHhhccCcccccCcccchhhhhh-hhhhcCChHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAE----WLPVLTKRIDDG-------MSRVRLLARYSNGDAPLPELTRNTSAAWRSF-QREARTNWGLMVRDSVA 68 (456) Q Consensus 1 ~~~~t~~~----~~~~l~~~~~~~-------~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~-~~k~~~n~~~~iVd~~~ 68 (456) |.+-...+ +.+++...+... +....+-.+||.|++-- ......+... ...++.|.++.+|+..+ T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~----~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:32 8 MATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP----PEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC----HHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 44332222 223333333222 22334557899997631 1211111111 12477899999999999 Q ss_pred HhhhcCCcccCC---C-ccc--cHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC---CCceEEEEEcc Q lcl|Aclame:pro 69 DRIIPNGITVGG---S-ADS--DLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD---DGTATITADSP 135 (456) Q Consensus 69 ~~l~g~~~~~~~---~-~d~--~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~---~g~~~i~~~~p 135 (456) ++..-+.+.+.. . ++. +..+ .+..+++.|+.+.....++.+++++|.||+-++.+. +++++|..++| T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:32 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 999877654321 1 111 2222 345567778999999999999999999999888764 35678999999 Q ss_pred ceEEEEeeCCCCc----ee-EEEEEEEEecCC--------------------------------c--------------- Q lcl|Aclame:pro 136 ETMVVSVDPLQPW----RI-RAAMRWWRDLDA--------------------------------E--------------- 163 (456) Q Consensus 136 ~~~~~i~d~~~~~----~~-~~~i~~~~~~~~--------------------------------~--------------- 163 (456) .++ +|||.... .. .++++.|.+.+. . T Consensus 164 ~~v--~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (714) T protein:vir:32 164 NEV--FWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQ 241 (714) T ss_pred hhe--eeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccc Confidence 985 45543211 11 112222211000 0 Q ss_pred --------eeEE---EEEeCCeEEEEEEcccc------ccc-------------------ccceeeccCCCc-ccccccc Q lcl|Aclame:pro 164 --------SDFA---IVWSGDGWQKFARPCFV------QSS-------------------SRRRLVTRISDS-WVPVGDA 206 (456) Q Consensus 164 --------~~~~---~~~~~~~~~~~~~~~~~------~~~-------------------~~~~~~~~~~~~-~~~~~~~ 206 (456) ..++ .+|........+..... +.. ..+..+....+. ....+.. T Consensus 242 ~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~~~~ 321 (714) T protein:vir:32 242 QNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVDRPC 321 (714) T ss_pred ccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCcccccCCC Confidence 0001 11111000000000000 000 000000000011 1111112 Q ss_pred cccCceeEEEEe---c-CC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhh Q lcl|Aclame:pro 207 VVTGSPPPVVVY---Q-NP--DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASI 280 (456) Q Consensus 207 ~~~~~~~pv~~~---~-n~--~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~ 280 (456) |...+.+|++++ . .. ...|-+..+++.++.+|...|.....+ .+....+..|.. +..++ .+ .. T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~---~~~d~---~~--~e- 390 (714) T protein:vir:32 322 SAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDAT---QLSDN---DL--ME- 390 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcc---cccHH---HH--HH- Confidence 222233444433 1 11 124677889999999999988876543 222221111211 10110 00 00 Q ss_pred hhhhccceeecCCCcc--------eeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 281 FEAAPGALWELPPGVD--------IWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLF 351 (456) Q Consensus 281 ~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ 351 (456) .-..++.+...+++.+ +...+.. ....+...+......|-.+||+.+..+|..+++.||+|+......-.. T Consensus 391 ~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~ 470 (714) T protein:vir:32 391 QIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGAT 470 (714) T ss_pred hccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHH Confidence 0122333433333322 2222222 235567777777888888899999999987777899999988876666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcC---------CCccccc--eEEe----------c-----------CCCCCC- Q lcl|Aclame:pro 352 KCEDRLSIAKIGLEAILVKALQ----IEG---------ESVEDTV--DVSF----------E-----------SPDRVT- 394 (456) Q Consensus 352 k~~~~~~~f~~~l~~~~~l~~~----~~g---------~~~~~~i--~v~f----------~-----------~~~~~~- 394 (456) ........+..+.+++.++++. +.+ ..+.... .+.- + +..|.+ T Consensus 471 ~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~ 550 (714) T protein:vir:32 471 TLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTP 550 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCch Confidence 5556666666666666655543 211 1110000 0000 0 111222 Q ss_pred --HHHHHHHHHHHHhc-----CCCcHHHHHHhCCCCc-cHHHH-H------------------HHHHHHHHH-------- Q lcl|Aclame:pro 395 --LGEKYSAASLAKAA-----GESWASIRRNILNYNA-DQIKQ-D------------------DLDRAREQI-------- 439 (456) Q Consensus 395 --~~e~ad~~~kl~~~-----g~~s~~t~~~~~~~~~-~~~~~-~------------------e~~~~~e~~-------- 439 (456) ..+.+++++.+.+. +...-..+++.+.+.- +++.+ + .++...+++ T Consensus 551 t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~~~~~q~~lq 630 (714) T protein:vir:32 551 AFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQALQQQQAELQ 630 (714) T ss_pred HHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCCCCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHHHHHHH Confidence 23445555555432 1112233444444310 11100 0 000000000 Q ss_pred -HHHhh-cccccccCCCCC Q lcl|Aclame:pro 440 -TLFAG-NPVQRPQEDGSR 456 (456) Q Consensus 440 -~~~~~-~~~~~~~~~Gs~ 456 (456) ..+.. ...-......++ T Consensus 631 ~~~~~a~~~k~eae~~~a~ 649 (714) T protein:vir:32 631 MREMAGRVAKLEADAARAH 649 (714) T ss_pred HHHHHHHHHHHHHHHHHHH Confidence 00000 000000000011 No 99 >protein:vir:9950 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859080;genbank:gi:32170835;genbank:GeneID:2653184 Probab=99.60 E-value=6.8e-14 Score=92.76 Aligned_cols=439 Identities=12% Similarity=0.048 Sum_probs=195.9 Q ss_pred CCCCCHHH----HHHHHHHHHHHH-------HHHHHHHHHHhhccCcccccCcccchhhhhh-hhhhcCChHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAE----WLPVLTKRIDDG-------MSRVRLLARYSNGDAPLPELTRNTSAAWRSF-QREARTNWGLMVRDSVA 68 (456) Q Consensus 1 ~~~~t~~~----~~~~l~~~~~~~-------~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~-~~k~~~n~~~~iVd~~~ 68 (456) |.+-...+ +.+++...+... +....+-.+||.|++-- ......+... ...++.|.++.+|+..+ T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~----~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:99 8 MATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP----PEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC----HHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 44332222 223333333222 22334557899997631 1211111111 12477899999999999 Q ss_pred HhhhcCCcccCC---C-ccc--cHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC---CCceEEEEEcc Q lcl|Aclame:pro 69 DRIIPNGITVGG---S-ADS--DLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD---DGTATITADSP 135 (456) Q Consensus 69 ~~l~g~~~~~~~---~-~d~--~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~---~g~~~i~~~~p 135 (456) ++..-+.+.+.. . ++. +..+ .+..+++.|+.+.....++.+++++|.||+-++.+. +++++|..++| T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:99 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 999877654321 1 111 2222 345567778999999999999999999999888764 35678999999 Q ss_pred ceEEEEeeCCCCc----ee-EEEEEEEEecCC--------------------------------c--------------- Q lcl|Aclame:pro 136 ETMVVSVDPLQPW----RI-RAAMRWWRDLDA--------------------------------E--------------- 163 (456) Q Consensus 136 ~~~~~i~d~~~~~----~~-~~~i~~~~~~~~--------------------------------~--------------- 163 (456) .++ +|||.... .. .++++.|.+.+. . T Consensus 164 ~~v--~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (714) T protein:vir:99 164 NEV--FWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQ 241 (714) T ss_pred hhe--eeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccc Confidence 985 45543211 11 112222211000 0 Q ss_pred --------eeEE---EEEeCCeEEEEEEcccc------ccc-------------------ccceeeccCCCc-ccccccc Q lcl|Aclame:pro 164 --------SDFA---IVWSGDGWQKFARPCFV------QSS-------------------SRRRLVTRISDS-WVPVGDA 206 (456) Q Consensus 164 --------~~~~---~~~~~~~~~~~~~~~~~------~~~-------------------~~~~~~~~~~~~-~~~~~~~ 206 (456) ..++ .+|........+..... +.. ..+..+....+. ....+.. T Consensus 242 ~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~~~~ 321 (714) T protein:vir:99 242 QNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVDRPC 321 (714) T ss_pred ccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCcccccCCC Confidence 0001 11111000000000000 000 000000000011 1111112 Q ss_pred cccCceeEEEEe---c-CC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhh Q lcl|Aclame:pro 207 VVTGSPPPVVVY---Q-NP--DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASI 280 (456) Q Consensus 207 ~~~~~~~pv~~~---~-n~--~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~ 280 (456) |...+.+|++++ . .. ...|-+..+++.++.+|...|.....+ .+....+..|.. +..++ .+ .. T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~---~~~d~---~~--~e- 390 (714) T protein:vir:99 322 SAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDAT---QLSDN---DL--ME- 390 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcc---cccHH---HH--HH- Confidence 222233444433 1 11 124677889999999999988876543 222221111211 10110 00 00 Q ss_pred hhhhccceeecCCCcc--------eeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 281 FEAAPGALWELPPGVD--------IWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLF 351 (456) Q Consensus 281 ~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ 351 (456) .-..++.+...+++.+ +...+.. ....+...+......|-.+||+.+..+|..+++.||+|+......-.. T Consensus 391 ~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~ 470 (714) T protein:vir:99 391 QIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGAT 470 (714) T ss_pred hccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHH Confidence 0122333433333322 2222222 235567777777888888899999999987777899999988876666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcC---------CCccccc--eEEe----------c-----------CCCCCC- Q lcl|Aclame:pro 352 KCEDRLSIAKIGLEAILVKALQ----IEG---------ESVEDTV--DVSF----------E-----------SPDRVT- 394 (456) Q Consensus 352 k~~~~~~~f~~~l~~~~~l~~~----~~g---------~~~~~~i--~v~f----------~-----------~~~~~~- 394 (456) ........+..+.+++.++++. +.+ ..+.... .+.- + +..|.+ T Consensus 471 ~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~ 550 (714) T protein:vir:99 471 TLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTP 550 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCch Confidence 5556666666666666655543 211 1110000 0000 0 111222 Q ss_pred --HHHHHHHHHHHHhc-----CCCcHHHHHHhCCCCc-cHHHH-H------------------HHHHHHHHH-------- Q lcl|Aclame:pro 395 --LGEKYSAASLAKAA-----GESWASIRRNILNYNA-DQIKQ-D------------------DLDRAREQI-------- 439 (456) Q Consensus 395 --~~e~ad~~~kl~~~-----g~~s~~t~~~~~~~~~-~~~~~-~------------------e~~~~~e~~-------- 439 (456) ..+.+++++.+.+. +...-..+++.+.+.- +++.+ + .++...+++ T Consensus 551 t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~~~~~q~~lq 630 (714) T protein:vir:99 551 AFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQALQQQQAELQ 630 (714) T ss_pred HHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCCCCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHHHHHHH Confidence 23445555555432 1112233444444310 11100 0 000000000 Q ss_pred -HHHhh-cccccccCCCCC Q lcl|Aclame:pro 440 -TLFAG-NPVQRPQEDGSR 456 (456) Q Consensus 440 -~~~~~-~~~~~~~~~Gs~ 456 (456) ..+.. ...-......++ T Consensus 631 ~~~~~a~~~k~eae~~~a~ 649 (714) T protein:vir:99 631 MREMAGRVAKLEADAARAH 649 (714) T ss_pred HHHHHHHHHHHHHHHHHHH Confidence 00000 000000000011 No 100 >protein:vir:817 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050550;genbank:gi:9633447;genbank:GeneID:1262279 Probab=99.60 E-value=6.8e-14 Score=92.76 Aligned_cols=439 Identities=12% Similarity=0.048 Sum_probs=195.9 Q ss_pred CCCCCHHH----HHHHHHHHHHHH-------HHHHHHHHHHhhccCcccccCcccchhhhhh-hhhhcCChHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAE----WLPVLTKRIDDG-------MSRVRLLARYSNGDAPLPELTRNTSAAWRSF-QREARTNWGLMVRDSVA 68 (456) Q Consensus 1 ~~~~t~~~----~~~~l~~~~~~~-------~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~-~~k~~~n~~~~iVd~~~ 68 (456) |.+-...+ +.+++...+... +....+-.+||.|++-- ......+... ...++.|.++.+|+..+ T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~----~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:81 8 MATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP----PEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC----HHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 44332222 223333333222 22334557899997631 1211111111 12477899999999999 Q ss_pred HhhhcCCcccCC---C-ccc--cHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC---CCceEEEEEcc Q lcl|Aclame:pro 69 DRIIPNGITVGG---S-ADS--DLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD---DGTATITADSP 135 (456) Q Consensus 69 ~~l~g~~~~~~~---~-~d~--~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~---~g~~~i~~~~p 135 (456) ++..-+.+.+.. . ++. +..+ .+..+++.|+.+.....++.+++++|.||+-++.+. +++++|..++| T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:81 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 999877654321 1 111 2222 345567778999999999999999999999888764 35678999999 Q ss_pred ceEEEEeeCCCCc----ee-EEEEEEEEecCC--------------------------------c--------------- Q lcl|Aclame:pro 136 ETMVVSVDPLQPW----RI-RAAMRWWRDLDA--------------------------------E--------------- 163 (456) Q Consensus 136 ~~~~~i~d~~~~~----~~-~~~i~~~~~~~~--------------------------------~--------------- 163 (456) .++ +|||.... .. .++++.|.+.+. . T Consensus 164 ~~v--~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (714) T protein:vir:81 164 NEV--FWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQ 241 (714) T ss_pred hhe--eeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccc Confidence 985 45543211 11 112222211000 0 Q ss_pred --------eeEE---EEEeCCeEEEEEEcccc------ccc-------------------ccceeeccCCCc-ccccccc Q lcl|Aclame:pro 164 --------SDFA---IVWSGDGWQKFARPCFV------QSS-------------------SRRRLVTRISDS-WVPVGDA 206 (456) Q Consensus 164 --------~~~~---~~~~~~~~~~~~~~~~~------~~~-------------------~~~~~~~~~~~~-~~~~~~~ 206 (456) ..++ .+|........+..... +.. ..+..+....+. ....+.. T Consensus 242 ~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~~~~ 321 (714) T protein:vir:81 242 QNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVDRPC 321 (714) T ss_pred ccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCcccccCCC Confidence 0001 11111000000000000 000 000000000011 1111112 Q ss_pred cccCceeEEEEe---c-CC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhh Q lcl|Aclame:pro 207 VVTGSPPPVVVY---Q-NP--DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASI 280 (456) Q Consensus 207 ~~~~~~~pv~~~---~-n~--~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~ 280 (456) |...+.+|++++ . .. ...|-+..+++.++.+|...|.....+ .+....+..|.. +..++ .+ .. T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~---~~~d~---~~--~e- 390 (714) T protein:vir:81 322 SAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDAT---QLSDN---DL--ME- 390 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcc---cccHH---HH--HH- Confidence 222233444433 1 11 124677889999999999988876543 222221111211 10110 00 00 Q ss_pred hhhhccceeecCCCcc--------eeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 281 FEAAPGALWELPPGVD--------IWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLF 351 (456) Q Consensus 281 ~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ 351 (456) .-..++.+...+++.+ +...+.. ....+...+......|-.+||+.+..+|..+++.||+|+......-.. T Consensus 391 ~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~ 470 (714) T protein:vir:81 391 QIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGAT 470 (714) T ss_pred hccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHH Confidence 0122333433333322 2222222 235567777777888888899999999987777899999988876666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcC---------CCccccc--eEEe----------c-----------CCCCCC- Q lcl|Aclame:pro 352 KCEDRLSIAKIGLEAILVKALQ----IEG---------ESVEDTV--DVSF----------E-----------SPDRVT- 394 (456) Q Consensus 352 k~~~~~~~f~~~l~~~~~l~~~----~~g---------~~~~~~i--~v~f----------~-----------~~~~~~- 394 (456) ........+..+.+++.++++. +.+ ..+.... .+.- + +..|.+ T Consensus 471 ~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~ 550 (714) T protein:vir:81 471 TLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTP 550 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCch Confidence 5556666666666666655543 211 1110000 0000 0 111222 Q ss_pred --HHHHHHHHHHHHhc-----CCCcHHHHHHhCCCCc-cHHHH-H------------------HHHHHHHHH-------- Q lcl|Aclame:pro 395 --LGEKYSAASLAKAA-----GESWASIRRNILNYNA-DQIKQ-D------------------DLDRAREQI-------- 439 (456) Q Consensus 395 --~~e~ad~~~kl~~~-----g~~s~~t~~~~~~~~~-~~~~~-~------------------e~~~~~e~~-------- 439 (456) ..+.+++++.+.+. +...-..+++.+.+.- +++.+ + .++...+++ T Consensus 551 t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~~~~~q~~lq 630 (714) T protein:vir:81 551 AFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQALQQQQAELQ 630 (714) T ss_pred HHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCCCCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHHHHHHH Confidence 23445555555432 1112233444444310 11100 0 000000000 Q ss_pred -HHHhh-cccccccCCCCC Q lcl|Aclame:pro 440 -TLFAG-NPVQRPQEDGSR 456 (456) Q Consensus 440 -~~~~~-~~~~~~~~~Gs~ 456 (456) ..+.. ...-......++ T Consensus 631 ~~~~~a~~~k~eae~~~a~ 649 (714) T protein:vir:81 631 MREMAGRVAKLEADAARAH 649 (714) T ss_pred HHHHHHHHHHHHHHHHHHH Confidence 00000 000000000011 No 101 >protein:vir:10117 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859247;genbank:gi:32171003;genbank:GeneID:2653343 Probab=99.60 E-value=6.8e-14 Score=92.76 Aligned_cols=439 Identities=12% Similarity=0.048 Sum_probs=195.9 Q ss_pred CCCCCHHH----HHHHHHHHHHHH-------HHHHHHHHHHhhccCcccccCcccchhhhhh-hhhhcCChHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAE----WLPVLTKRIDDG-------MSRVRLLARYSNGDAPLPELTRNTSAAWRSF-QREARTNWGLMVRDSVA 68 (456) Q Consensus 1 ~~~~t~~~----~~~~l~~~~~~~-------~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~-~~k~~~n~~~~iVd~~~ 68 (456) |.+-...+ +.+++...+... +....+-.+||.|++-- ......+... ...++.|.++.+|+..+ T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~----~~~~~~l~~~g~p~~~~N~i~~~v~~v~ 83 (714) T protein:vir:10 8 MATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP----PEVLQVLKDRGQPMTIHNLIAPTVDGVL 83 (714) T ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC----HHHHHHHHhcCCCcEEeccHHHHHHHHH Confidence 44332222 223333333222 22334557899997631 1211111111 12477899999999999 Q ss_pred HhhhcCCcccCC---C-ccc--cHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC---CCceEEEEEcc Q lcl|Aclame:pro 69 DRIIPNGITVGG---S-ADS--DLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD---DGTATITADSP 135 (456) Q Consensus 69 ~~l~g~~~~~~~---~-~d~--~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~---~g~~~i~~~~p 135 (456) ++..-+.+.+.. . ++. +..+ .+..+++.|+.+.....++.+++++|.||+-++.+. +++++|..++| T Consensus 84 g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~~i~i~~v~p 163 (714) T protein:vir:10 84 GMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGPEFKVSTVSR 163 (714) T ss_pred hHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccCCCCCCeEEEecch Confidence 999877654321 1 111 2222 345567778999999999999999999999888764 35678999999 Q ss_pred ceEEEEeeCCCCc----ee-EEEEEEEEecCC--------------------------------c--------------- Q lcl|Aclame:pro 136 ETMVVSVDPLQPW----RI-RAAMRWWRDLDA--------------------------------E--------------- 163 (456) Q Consensus 136 ~~~~~i~d~~~~~----~~-~~~i~~~~~~~~--------------------------------~--------------- 163 (456) .++ +|||.... .. .++++.|.+.+. . T Consensus 164 ~~v--~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 241 (714) T protein:vir:10 164 NEV--FWDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEEYQSWDRQ 241 (714) T ss_pred hhe--eeccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhhhcccccc Confidence 985 45543211 11 112222211000 0 Q ss_pred --------eeEE---EEEeCCeEEEEEEcccc------ccc-------------------ccceeeccCCCc-ccccccc Q lcl|Aclame:pro 164 --------SDFA---IVWSGDGWQKFARPCFV------QSS-------------------SRRRLVTRISDS-WVPVGDA 206 (456) Q Consensus 164 --------~~~~---~~~~~~~~~~~~~~~~~------~~~-------------------~~~~~~~~~~~~-~~~~~~~ 206 (456) ..++ .+|........+..... +.. ..+..+....+. ....+.. T Consensus 242 ~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~~L~~~~~ 321 (714) T protein:vir:10 242 QNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPHFIVDRPC 321 (714) T ss_pred ccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecCcccccCCC Confidence 0001 11111000000000000 000 000000000011 1111112 Q ss_pred cccCceeEEEEe---c-CC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhh Q lcl|Aclame:pro 207 VVTGSPPPVVVY---Q-NP--DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASI 280 (456) Q Consensus 207 ~~~~~~~pv~~~---~-n~--~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~ 280 (456) |...+.+|++++ . .. ...|-+..+++.++.+|...|.....+ .+....+..|.. +..++ .+ .. T Consensus 322 p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~---~~~d~---~~--~e- 390 (714) T protein:vir:10 322 SAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDAT---QLSDN---DL--ME- 390 (714) T ss_pred CCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcc---cccHH---HH--HH- Confidence 222233444433 1 11 124677889999999999988876543 222221111211 10110 00 00 Q ss_pred hhhhccceeecCCCcc--------eeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 281 FEAAPGALWELPPGVD--------IWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLF 351 (456) Q Consensus 281 ~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ 351 (456) .-..++.+...+++.+ +...+.. ....+...+......|-.+||+.+..+|..+++.||+|+......-.. T Consensus 391 ~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAi~~rq~qg~~ 470 (714) T protein:vir:10 391 QIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAISNLVEQGAT 470 (714) T ss_pred hccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccchhHHHHHHHHHHHHH Confidence 0122333433333322 2222222 235567777777888888899999999987777899999988876666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcC---------CCccccc--eEEe----------c-----------CCCCCC- Q lcl|Aclame:pro 352 KCEDRLSIAKIGLEAILVKALQ----IEG---------ESVEDTV--DVSF----------E-----------SPDRVT- 394 (456) Q Consensus 352 k~~~~~~~f~~~l~~~~~l~~~----~~g---------~~~~~~i--~v~f----------~-----------~~~~~~- 394 (456) ........+..+.+++.++++. +.+ ..+.... .+.- + +..|.+ T Consensus 471 ~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~~p~~~ 550 (714) T protein:vir:10 471 TLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAPVQQTP 550 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEeeccCch Confidence 5556666666666666655543 211 1110000 0000 0 111222 Q ss_pred --HHHHHHHHHHHHhc-----CCCcHHHHHHhCCCCc-cHHHH-H------------------HHHHHHHHH-------- Q lcl|Aclame:pro 395 --LGEKYSAASLAKAA-----GESWASIRRNILNYNA-DQIKQ-D------------------DLDRAREQI-------- 439 (456) Q Consensus 395 --~~e~ad~~~kl~~~-----g~~s~~t~~~~~~~~~-~~~~~-~------------------e~~~~~e~~-------- 439 (456) ..+.+++++.+.+. +...-..+++.+.+.- +++.+ + .++...+++ T Consensus 551 t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~p~~~el~~~ir~~~~~~~~~~~~~~e~q~~~~~~q~~~~~q~~lq 630 (714) T protein:vir:10 551 AFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQALQQQQAELQ 630 (714) T ss_pred HHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCCCCHHHHHHHHHHHcCCCCCccccchhhHHHHHHHHHHHHHHHHHH Confidence 23445555555432 1112233444444310 11100 0 000000000 Q ss_pred -HHHhh-cccccccCCCCC Q lcl|Aclame:pro 440 -TLFAG-NPVQRPQEDGSR 456 (456) Q Consensus 440 -~~~~~-~~~~~~~~~Gs~ 456 (456) ..+.. ...-......++ T Consensus 631 ~~~~~a~~~k~eae~~~a~ 649 (714) T protein:vir:10 631 MREMAGRVAKLEADAARAH 649 (714) T ss_pred HHHHHHHHHHHHHHHHHHH Confidence 00000 000000000011 No 102 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.57 E-value=2.4e-15 Score=100.78 Aligned_cols=389 Identities=12% Similarity=0.035 Sum_probs=182.4 Q ss_pred HHHHHHHHHHHHHHHHHhhccCcccccCc-ccch--hhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccHHHHH Q lcl|Aclame:pro 14 TKRIDDGMSRVRLLARYSNGDAPLPELTR-NTSA--AWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDLALRA 90 (456) Q Consensus 14 ~~~~~~~~~~~~~~~~YY~g~~~i~~~~~-~~~~--~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l 90 (456) ++.+. -+-+....-|.++-...+. .... ++-... ..+.+++++||..+.-++.+++.+.++++. +.+ T Consensus 1 ~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y--~~~~l~~~~Vd~~aed~~r~g~~i~g~~~~---~~~ 70 (427) T protein:vir:10 1 MKIVK-----HDGYNDIFNGGADGSPKPFFMSDASYHVGSFY--NDNATAKRIVDVIPEEMVTAGFKMSGVKDE---KEF 70 (427) T ss_pred CCccc-----cchHHHHhhcCCCCcccCccccCchHHHHHHH--HcCchhhhhhccchHHhhcCCccccCccHH---HHH Confidence 11110 0111112222111100110 0001 111221 235678999999999999999999765443 356 Q ss_pred HHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc----------e-EEEEEccceEEEEeeCCCCceeEEEEEEEEe Q lcl|Aclame:pro 91 RRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT----------A-TITADSPETMVVSVDPLQPWRIRAAMRWWRD 159 (456) Q Consensus 91 ~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~----------~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 159 (456) ...|++=++.....++.+.+..||.|++++-.+.+.. + .+.++++.++.|-....+.... T Consensus 71 ~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~--------- 141 (427) T protein:vir:10 71 KSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSP--------- 141 (427) T ss_pred HHHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCcccc--------- Confidence 6777776788899999999999999999876543221 1 2333333333221100000000 Q ss_pred cCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCcee-EE--EEecCCCCCchHH-HHHHHHH Q lcl|Aclame:pro 160 LDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPP-PV--VVYQNPDGMGEVE-PHIDIIN 235 (456) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv--~~~~n~~~~s~~~-~v~~liD 235 (456) ..+.... |.+.... . .. ...+......++-+.+ |- -+.+|-+|.|.+. .+.+-+. T Consensus 142 ~fg~P~~---------y~v~~~~---~-~~--------~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~ 200 (427) T protein:vir:10 142 RYGEPEI---------YKVSPGD---N-MQ--------PYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAIC 200 (427) T ss_pred ccCcceE---------EEEecCC---C-Cc--------ceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHH Confidence 0011111 1110000 0 00 0000000111111111 00 0123456788775 4666666 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhh---hhhccceeecCCCcceeeccccchHHHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIF---EAAPGALWELPPGVDIWESQANDFTPMLSAI 312 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (456) .++++.......+..+......+.|........+...........+ ....+.+....++.++.++ ..++++..+.+ T Consensus 201 ~~~~~~~~~~~l~~k~~~~v~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~-~~~lsgl~~~~ 279 (427) T protein:vir:10 201 DYDYCESLATQILRRKQQAVWKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVL-NSDISGVPEFL 279 (427) T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEE-ecccCChHHHH Confidence 7776665544443333333222323211110111111111111111 1123334444444555444 35566777788 Q ss_pred HHHHHHHHhhcCCChhhhccc-cc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecC Q lcl|Aclame:pro 313 KEHIRQLSSATKTPLPMLMPD-SA--NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFES 389 (456) Q Consensus 313 ~~~~~~i~~~t~~p~~~~~~~-~~--n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~ 389 (456) ....++|++.+++|...+-+. .+ |.||+.-..-|...+.- ..+..+.+.+++++.+++.- .++.+.|+| T Consensus 280 ~~~~~~iaaa~~IP~t~L~G~sp~Glnstgd~D~~nyyd~i~~--~Qe~~l~p~l~~l~~~i~~s------~~~~~~f~p 351 (427) T protein:vir:10 280 SSKMDRIVSLSGIHEIIIKNKNVGGVSASQNTALETFYKLVDR--KREEDYRPLLEFLLPFIVDE------EEWSIEFEP 351 (427) T ss_pred HHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC------CCcEEEeCC Confidence 889999999999998766433 22 45667544444433332 22356888888888886522 367899999 Q ss_pred CCCCCHHHHHH-------HHHHHHhcCCCcHHHHHHhC----CCCcc-HHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 390 PDRVTLGEKYS-------AASLAKAAGESWASIRRNIL----NYNAD-QIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 390 ~~~~~~~e~ad-------~~~kl~~~g~~s~~t~~~~~----~~~~~-~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) -...+..|.|+ ++++++++|+++.+.+++.| +...- ...++..+..+++ . .+.+.+.++.+. T Consensus 352 L~~~s~kEkaei~~~~a~a~~~~~~~gvi~~~e~r~~L~~~~~~~~~~~~~~~~~e~~~~~----~-e~~p~~~e~~~d 425 (427) T protein:vir:10 352 LSVPSKKEESEITKNNVESVTKAITEQIIDLEEARDTLRSIAPEFKLKDGNNINIREPEET----T-EPEPGLGEKLED 425 (427) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhhccccCCCCccccccccchh----c-CCCCCCCCCCCC Confidence 88888887655 55667778988888776544 11100 0001100000000 0 111112222222 No 103 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.57 E-value=1e-15 Score=102.76 Aligned_cols=420 Identities=11% Similarity=0.021 Sum_probs=191.4 Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHH--------HHHH-------------HHhhccCccccc-Ccccc-hhhhhhhhhhc Q lcl|Aclame:pro 1 MT-ASTPAEWLPVLTKRIDDGMSRV--------RLLA-------------RYSNGDAPLPEL-TRNTS-AAWRSFQREAR 56 (456) Q Consensus 1 ~~-~~t~~~~~~~l~~~~~~~~~~~--------~~~~-------------~YY~g~~~i~~~-~~~~~-~~~~~~~~k~~ 56 (456) +. -.+....++-.+.+-....+.- +-+. .|+-.+.-..+. ....+ -++-... .. T Consensus 68 ~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~gyql~alY--~~ 145 (862) T protein:vir:99 68 ISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQGFIGHQACALI--AQ 145 (862) T ss_pred ccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccccccchhccccccccCcccHHHHHHH--Hh Confidence 11 0011111111111111100000 0011 111110000000 00000 0111221 23 Q ss_pred CChHHHHHHHHHHhhhcCCcccCCCcc-----ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC-CCCceEE Q lcl|Aclame:pro 57 TNWGLMVRDSVADRIIPNGITVGGSAD-----SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR-DDGTATI 130 (456) Q Consensus 57 ~n~~~~iVd~~~~~l~g~~~~~~~~~d-----~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~-~~g~~~i 130 (456) +.+++++||..+.-++-+++.+.+..| .+....+.+.|.+-++...+.++.+.+..||.+++++..+ .|+...- T Consensus 146 ~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~eair~~RLyGga~ililv~~~D~~~Ls 225 (862) T protein:vir:99 146 HWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLIEFNRFKNVFGIRVAIFVVDSEDPDYYE 225 (862) T ss_pred CchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEEecCcCchhhh Confidence 567899999999999999999875433 2345567778887788888899999999999887776543 3332111 Q ss_pred EEEccce-------EEEEeeCCCCceeEEEEEEEEecC----CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCc Q lcl|Aclame:pro 131 TADSPET-------MVVSVDPLQPWRIRAAMRWWRDLD----AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDS 199 (456) Q Consensus 131 ~~~~p~~-------~~~i~d~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (456) ..+++.. .+.++|+..-..+. ......+.. +...... ..+..+|.. +.+... +. T Consensus 226 qPLn~e~I~kG~lkgl~vlDp~w~~p~~-v~~~~~Dp~sp~yGkP~~y~--I~g~~IH~S----------Rliif~--g~ 290 (862) T protein:vir:99 226 KPFNPDGITPGSYRGISQIDPYWMMPML-TAESTADPSSQFFYEPEFWI--ISGQKYHRS----------HLIIAR--GP 290 (862) T ss_pred cCcCcccccccceeEEEEechhhhcccc-cccccccccccccCCceeee--ecCeeeccc----------eeEEec--CC Confidence 2222211 12222221100000 000011100 0111100 001111110 000000 00 Q ss_pred ccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhh Q lcl|Aclame:pro 200 WVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYAS 279 (456) Q Consensus 200 ~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~ 279 (456) . .+.... ..+|-+|.|.++.+.+.+.+++++.......+..+......+.|.. ...++.+ ...... T Consensus 291 ~-----vpd~lk-----~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~v~ktd~l~---~l~~ed~-l~~r~~ 356 (862) T protein:vir:99 291 Q-----PADILK-----PTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTTAIHTDTAK---AIANEDK-FIQRLM 356 (862) T ss_pred C-----chhhhh-----ccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeechhHh---hhccHHH-HHHHHH Confidence 0 000000 0123368999999999888888877665554444443332222221 1112221 111111 Q ss_pred hhhh--hccceeecCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccc--c-cchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 280 IFEA--APGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS--A-NQSAEGAHNIEKGFLFKCE 354 (456) Q Consensus 280 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~--~-n~Sg~Al~~~~~~l~~k~~ 354 (456) .+.. +...++.++.+.++.+++ .++++..+.+....++|++.++||...|-+.+ + |.||+.-..-|...+.-. T Consensus 357 ~~~~~rdN~Gi~liD~eEe~e~ls-~slSGL~dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~D~~nYyD~I~s~- 434 (862) T protein:vir:99 357 FWVRYRDNHAVKVLGTDETMEQFD-TSLADFDAVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEFETISYHEELESI- 434 (862) T ss_pred HHHhccCcceeEEecCCCceeEEe-cccCChHHHHHHHHHHHHhhhCCCceeecccCcccccCchHHHHHHHHHHHHHH- Confidence 1221 112355666666665443 55566777888888999999999997554332 2 467775444344433322 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHH-------HHHHHhcCCCcHHHHHHhC------C Q lcl|Aclame:pro 355 DRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSA-------ASLAKAAGESWASIRRNIL------N 421 (456) Q Consensus 355 ~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~-------~~kl~~~g~~s~~t~~~~~------~ 421 (456) .+..+.+.|++++.++....|. ..++.+.|++-...+..|.|+. +++++++|+++.+.++..| | T Consensus 435 -QE~~L~P~LerL~~li~~~lg~--~~d~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g 511 (862) T protein:vir:99 435 -QEHVYMPFLQRHYLISRLSLGI--QHEIDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSG 511 (862) T ss_pred -HHHHHHHHHHHHHHHHHHhcCC--CCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcC Confidence 2356888888888776544453 3568899999888898887654 5677788999988877653 3 Q ss_pred CCccHHHHHHHHH--HHHHHH---HHhhccc---ccccCCCCC Q lcl|Aclame:pro 422 YNADQIKQDDLDR--AREQIT---LFAGNPV---QRPQEDGSR 456 (456) Q Consensus 422 ~~~~~~~~~e~~~--~~e~~~---~~~~~~~---~~~~~~Gs~ 456 (456) +..-..++.+.+. ..+... ....... ..+...|++ T Consensus 512 ~~~l~ded~E~d~~~~~e~~~~~e~~g~a~~~ap~de~~aga~ 554 (862) T protein:vir:99 512 YNRLTKEDAEETPGASPENLAAYQKAGAAQETASAKETQAGAA 554 (862) T ss_pred CCCCCcccccccCCCCcccccccccCCcccccccccccccccC Confidence 3321111111000 000000 0000000 001111111 No 104 >protein:vir:104437 Length: 714 # NCBI annotation: putative phage portal protein # Family: family:all:487 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794061;genbank:gi:116222006;genbank:GeneID:4397502 Probab=99.56 E-value=6.2e-14 Score=92.98 Aligned_cols=437 Identities=12% Similarity=0.035 Sum_probs=192.0 Q ss_pred CCCCCHH-----------HHHHHHHHHHHH-------HHHHHHHHHHHhhccCcccccCcccchhhhhh-hhhhcCChHH Q lcl|Aclame:pro 1 MTASTPA-----------EWLPVLTKRIDD-------GMSRVRLLARYSNGDAPLPELTRNTSAAWRSF-QREARTNWGL 61 (456) Q Consensus 1 ~~~~t~~-----------~~~~~l~~~~~~-------~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~-~~k~~~n~~~ 61 (456) |..+++. ++..++...+.. -+....+-.+||.|++- +.+....+... ...++.|.++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw----~~~~~~~l~~~g~p~~~~N~i~ 76 (714) T protein:vir:10 1 MKNEINTTAMKNDHGSTPRFSQRQLLSLCSDIDSQPLWRDAANKACAYYDGDQL----APEVIQVLKDRGQPMTIHNLIA 76 (714) T ss_pred CCcCcCcccCCCcchhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCC----CHHHHHHHHhcCCCcEEeccHH Confidence 3221111 122222222211 12233455789999863 11111111111 1247789999 Q ss_pred HHHHHHHHhhhcCCcccCCC----ccc--cHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCC---Cce Q lcl|Aclame:pro 62 MVRDSVADRIIPNGITVGGS----ADS--DLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDD---GTA 128 (456) Q Consensus 62 ~iVd~~~~~l~g~~~~~~~~----~d~--~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~---g~~ 128 (456) .+|+..+++..-+.+.+... .+. +..+ .+..+++.|+.+..+..++.+++++|.||+-++.+.| +++ T Consensus 77 ~~v~~v~g~~~~nr~~~~v~pr~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~d~d~~~~~i 156 (714) T protein:vir:10 77 PTVDGVLGMEAKTRTDLIVMSDDPNDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSEPFGPEF 156 (714) T ss_pred HHHHHHHHHHHhCCcceEEecCCCChhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcccceEEeeeccCCCCCCe Confidence 99999999998776544211 111 2222 3445677789999999999999999999998877643 678 Q ss_pred EEEEEccceEEEEeeCCCCc----eeEE-EEEEEEec------------------------------------------- Q lcl|Aclame:pro 129 TITADSPETMVVSVDPLQPW----RIRA-AMRWWRDL------------------------------------------- 160 (456) Q Consensus 129 ~i~~~~p~~~~~i~d~~~~~----~~~~-~i~~~~~~------------------------------------------- 160 (456) +|..++|.+++ |||.... ...+ +++.|.+. T Consensus 157 ~i~~v~p~~v~--~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fp~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (714) T protein:vir:10 157 KVSTVSRNEVF--WDWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEE 234 (714) T ss_pred EEEecChhhee--eccccccCChhhhhhhhhhccCCHHHHHHhcCCchhhhhccchhhcCcccchhhhhhcccccccchh Confidence 99999998854 4543211 0000 11111000 Q ss_pred --------------C-CceeEEEEEeCCeEEEEEEcccccccccce---------------------------eeccCCC Q lcl|Aclame:pro 161 --------------D-AESDFAIVWSGDGWQKFARPCFVQSSSRRR---------------------------LVTRISD 198 (456) Q Consensus 161 --------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~ 198 (456) + .....+.+|........+..........+. ....+.. T Consensus 235 ~~~~~~~~~~~~~~~~~rV~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~~ 314 (714) T protein:vir:10 235 YQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGPH 314 (714) T ss_pred hcccccccccccccCcceEEEEEEEEeEEEEEEeecCCCCCeeeeCccCHHHHHHHHhccceecccceeeEEEEEEecch Confidence 0 000111122211111111000000000000 0000000 Q ss_pred cccccccccccCceeEEEEe---c---CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccch Q lcl|Aclame:pro 199 SWVPVGDAVVTGSPPPVVVY---Q---NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENG 272 (456) Q Consensus 199 ~~~~~~~~~~~~~~~pv~~~---~---n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g 272 (456) ....+..|...+..|++++ . .....|-+..+++.++.+|...|.....+. +.+++.+... . ++.- T Consensus 315 -~L~~~~~p~p~~~fp~vP~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l~----~~~~~~~~ga-v---~~~d 385 (714) T protein:vir:10 315 -FIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLLQ----AKRVIMDEDA-T---QLSD 385 (714) T ss_pred -hhhcCCCCCCCCceeeEEecceeeeccCccceehhhhhhHHHHHHHHHHHHHHHHh----CCceeecccc-c---cccH Confidence 0111212222223344332 1 112347788899999999999998765432 2223322111 1 1100 Q ss_pred hhhhhhhhhhhhccceeecCCC--------cceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHH Q lcl|Aclame:pro 273 NAIDYASIFEAAPGALWELPPG--------VDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAH 343 (456) Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~ 343 (456) ... ... -..++.+...+++ ..+...+... ...+...++.....|-.+||+.+..+|..+++.||+|+. T Consensus 386 ~~~--~e~-~~rp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAI~ 462 (714) T protein:vir:10 386 NDL--MEQ-LERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAIS 462 (714) T ss_pred HHH--HHh-ccCCCCeEEecccccccCCccccccccCCCCCcHHHHHHHHHHHHHHHHhhCCCHHHcCCCcchhHHHHHH Confidence 000 000 1123333333322 1222222222 345667777888888888999999999887778999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC---------Ccc----ccceEEe--------cC--------- Q lcl|Aclame:pro 344 NIEKGFLFKCEDRLSIAKIGLEAILVKALQ----IEGE---------SVE----DTVDVSF--------ES--------- 389 (456) Q Consensus 344 ~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~----~~g~---------~~~----~~i~v~f--------~~--------- 389 (456) .....-..........|..+.+++.++++. +.+. ... .-+.+.+ ++ T Consensus 463 ~r~~qg~~~l~~~~dnl~~~~~~~g~~ll~li~~~~~~~rv~RI~~e~~~~~~~~~~~~n~~~~~~~~~nDi~~~~~dv~ 542 (714) T protein:vir:10 463 NLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIA 542 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcccceeEeeccccCCccccccceeeeEEEE Confidence 877766555556666666666666555543 2211 000 0011110 01 Q ss_pred --CCCC--C-HHHHHHHHHHHHhcCCCc------HHHHHHhCCCC-ccHHHH-H-------------------------- Q lcl|Aclame:pro 390 --PDRV--T-LGEKYSAASLAKAAGESW------ASIRRNILNYN-ADQIKQ-D-------------------------- 430 (456) Q Consensus 390 --~~~~--~-~~e~ad~~~kl~~~g~~s------~~t~~~~~~~~-~~~~~~-~-------------------------- 430 (456) ..|. + ..+.++.++.+.++ +++ ...+++.+.+. .+++.+ + T Consensus 543 i~~~p~~~s~r~~~~~~l~ql~~~-~~p~~~~~~~~~~le~~d~p~~~ei~~~ir~~~~~~~~~~~~~~e~q~~q~~~~~ 621 (714) T protein:vir:10 543 LAPVQQTPAFKAQLAQRMSEVIQG-LPPQVQAVVLDLWVNLLDVPQKQEFVERIRAALGTPKSPDEMTPEEQEVAAQQQA 621 (714) T ss_pred EeeccCcHHHHHHHHHHHHHHHhh-cCchhhhhHHHHHHHhcCCcCHHHHHHHHHHHcCCCCCccccCcchhHHHHHHHH Confidence 1122 2 23344455554432 111 11222322221 000000 0 Q ss_pred -HHHHHHHHHHHHhh-cccccccCCCC--C Q lcl|Aclame:pro 431 -DLDRAREQITLFAG-NPVQRPQEDGS--R 456 (456) Q Consensus 431 -e~~~~~e~~~~~~~-~~~~~~~~~Gs--~ 456 (456) ++++.+.++..+.. ...-......+ + T Consensus 622 ~~~~q~~l~~~e~~a~~~k~eaea~~~~aq 651 (714) T protein:vir:10 622 LQQQQAELQMREMAGRVAKLEADAARAHAA 651 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 00000000000000 00000000000 1 No 105 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.52 E-value=3e-14 Score=94.75 Aligned_cols=407 Identities=11% Similarity=0.037 Sum_probs=197.8 Q ss_pred CCCCCH--HHHHHHHHHHHHHH--HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 1 MTASTP--AEWLPVLTKRIDDG--MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 1 ~~~~t~--~~~~~~l~~~~~~~--~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) |..++. .-.+..+....... ......+..||....-+ + .++-... ..+.+++++||..+.-++.+++ T Consensus 69 ~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~---g----yql~alY--~~~~l~rkiVd~pAeDa~R~g~ 139 (765) T protein:vir:96 69 VAMDSAYGDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFI---G----YQACAII--SQHWLVDKACSMSGEDAARNGW 139 (765) T ss_pred eeccccccccccchHHHhhhccCccchhhHHHhhhcccCCc---c----HHHHHHH--HhCchhhhhhhcchHHhhcCCc Confidence 222221 11122221111100 00111233343332111 1 1122222 2356889999999999999999 Q ss_pred ccCCCccc---cHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC-CCceEEEEEccceE-------EEEeeCC Q lcl|Aclame:pro 77 TVGGSADS---DLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD-DGTATITADSPETM-------VVSVDPL 145 (456) Q Consensus 77 ~~~~~~d~---~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~-~g~~~i~~~~p~~~-------~~i~d~~ 145 (456) .+.+..++ +....+...|++=++...+.++.+.+..||.+|+++-.+. |+...-..+++..+ +.++|+. T Consensus 140 ~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~~PL~~~~I~kg~~kgl~vldp~ 219 (765) T protein:vir:96 140 ELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYYEKPFNPDGIAPGSYKGISQIDPY 219 (765) T ss_pred eeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcchhhccccccccccceeeEEEEechh Confidence 98664332 2344577777777788999999999999999998776542 33211122222210 1111111 Q ss_pred CCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEE-----E---- Q lcl|Aclame:pro 146 QPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPV-----V---- 216 (456) Q Consensus 146 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-----~---- 216 (456) .-.... ...+..+ ...-.+|.+..+ .+. +..-|...++.+ - T Consensus 220 ~~~~~~-v~e~~~D----p~sp~fg~P~~y-~i~------------------------g~~IH~SRli~~~g~~lpd~lk 269 (765) T protein:vir:96 220 WAMPQL-TAESTAD----PSAEHFYEPDFW-IIS------------------------GKKYHRSHLVVVRGPQPPDILK 269 (765) T ss_pred hccccc-chhcccc----ccccccCcceee-eec------------------------CceeccceEEEecCCCchhhhc Confidence 000000 0000000 000111111111 000 001111111111 0 Q ss_pred EecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhh--ccceeecCCC Q lcl|Aclame:pro 217 VYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAA--PGALWELPPG 294 (456) Q Consensus 217 ~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~--~~~~~~~~~~ 294 (456) ...|-+|.|.++.+..-+.+++++.-.....+..+......+.+. ....++++- ......+... ...++.++.+ T Consensus 270 ~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v~k~~~~---~~l~~~~~l-~~r~~~~~~~r~n~g~~~id~e 345 (765) T protein:vir:96 270 PTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTSTIHVDVE---KAIANEDAF-NARLAFWIANRDNHGVKVIGID 345 (765) T ss_pred cccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeeechH---hhhccHHHH-HHHHHHHHHhcCCceeEEecCC Confidence 112335899999999888888887755554444333332222222 111122211 1111112211 2235566666 Q ss_pred cceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccc---ccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH Q lcl|Aclame:pro 295 VDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS---ANQSAEGAHNIEKGFLFKCEDRL-SIAKIGLEAILVK 370 (456) Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~---~n~Sg~Al~~~~~~l~~k~~~~~-~~f~~~l~~~~~l 370 (456) .++.+++ .++++..+.+....++|++.++||...|-+.+ -|.||+.-..-|... |+.+| ..+...+++++.+ T Consensus 346 e~~e~~s-~~lsgl~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nYyD~---I~s~Qe~~l~p~le~L~~l 421 (765) T protein:vir:96 346 ETMEQFD-TNLSDFDSVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISYHEE---LESIQEHIFDPLLERHYLL 421 (765) T ss_pred cceeEEe-cccCCHHHHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHH Confidence 6665554 45677788888999999999999986664432 256777543333332 33333 5678889999988 Q ss_pred HHHhcCCCccccceEEecCCCCCCHHHHHH-------HHHHHHhcCCCcHHHHHHhCC------CCccHHHHHHHHHH-- Q lcl|Aclame:pro 371 ALQIEGESVEDTVDVSFESPDRVTLGEKYS-------AASLAKAAGESWASIRRNILN------YNADQIKQDDLDRA-- 435 (456) Q Consensus 371 ~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad-------~~~kl~~~g~~s~~t~~~~~~------~~~~~~~~~e~~~~-- 435 (456) ++...+. +.++.+.|++....+.+|.|+ ++++++++|+++...+++.+. +.....++++.+.. T Consensus 422 i~~s~~i--~~d~~i~FnpL~~~sekEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~ 499 (765) T protein:vir:96 422 LAKSESI--DVQLEIVWNPVDSTTSQQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMS 499 (765) T ss_pred HHHhcCC--CCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCC Confidence 8766443 346899999998888887665 466677889999888887653 32111111111000 Q ss_pred --H-HHHHHHh------------hcccccccCCCCC Q lcl|Aclame:pro 436 --R-EQITLFA------------GNPVQRPQEDGSR 456 (456) Q Consensus 436 --~-e~~~~~~------------~~~~~~~~~~Gs~ 456 (456) . ++..... +.+.+++.++++. T Consensus 500 pe~~~~~~~~~~~~~~~~~e~~~~~a~p~~~eg~~~ 535 (765) T protein:vir:96 500 PENLAELEKAGAQSAKAKGEAERAEAQAGAVEGAGD 535 (765) T ss_pred ccccccccCCCcccccccCccccccCCCCccCCCCc Confidence 0 0000000 0011111111111 No 106 >protein:vir:105429 Length: 708 # NCBI annotation: gene 3 protein # Family: family:all:487 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958179;genbank:gi:41057281;genbank:GeneID:2716676 Probab=99.51 E-value=5.3e-13 Score=87.90 Aligned_cols=447 Identities=13% Similarity=0.016 Sum_probs=193.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHh--hccCcccccCcccchhhhhh-----hhhhcCChHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMS-------RVRLLARYS--NGDAPLPELTRNTSAAWRSF-----QREARTNWGLMVRDS 66 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~-------~~~~~~~YY--~g~~~i~~~~~~~~~~~~~~-----~~k~~~n~~~~iVd~ 66 (456) |+..+. +++.++...+..... ....-.+|| .|++--. .....++.. .-.++.|.++.+|+. T Consensus 1 m~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~D~~f~~~~G~QW~~----~~~~~l~~~~q~~grP~~~~N~i~~~v~~ 75 (708) T protein:vir:10 1 MAETLE-KKHERIMLRFDRAYSPQKEVREKCIEATRFARVPGGQWEG----ATAAGTKLDEQFEKYPKFEINKVATELNR 75 (708) T ss_pred CchhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHhhhhcCCCceEEcchHHHHHH Confidence 766655 477777665544321 111113355 5765321 111111111 114678999999999 Q ss_pred HHHhhhcCCcccCC-----CccccHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC---CC------Cce Q lcl|Aclame:pro 67 VADRIIPNGITVGG-----SADSDLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR---DD------GTA 128 (456) Q Consensus 67 ~~~~l~g~~~~~~~-----~~d~~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~---~~------g~~ 128 (456) .+++-.-+.+.+.. .+|.+..+ .+..+++.|+.+..+..++.+++++|.||+-+..| +. ..+ T Consensus 76 v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~d~i~~G~Gw~~~~~d~~~e~d~~~~~~~i 155 (708) T protein:vir:10 76 IIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDDRQRI 155 (708) T ss_pred HHHHHHhCCcceEEEcCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhhcccceeeeeeccccccCCCCCcccc Confidence 99999877654321 12233222 24456677999999999999999999999977543 11 122 Q ss_pred EE-EEEccceEEEEeeCCCCc-ee----EEEEEEEEecC----------------------------CceeEEE-EEeC- Q lcl|Aclame:pro 129 TI-TADSPETMVVSVDPLQPW-RI----RAAMRWWRDLD----------------------------AESDFAI-VWSG- 172 (456) Q Consensus 129 ~i-~~~~p~~~~~i~d~~~~~-~~----~~~i~~~~~~~----------------------------~~~~~~~-~~~~- 172 (456) ++ .+.+|. .-++|||.... .+ .++++.|.+.+ ....++. +|.. T Consensus 156 ~i~~~~~p~-~~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~p~~a~~~~d~~~~~~~~~~~~~~d~v~v~ey~~r~ 234 (708) T protein:vir:10 156 AIEPIYDPS-RSVWFDPDAKKYDKSDALWAFCMYSLSPEKYEAEYGKKPPTSLDVTSMTSWEYNWFGADVIYIAKYYEVR 234 (708) T ss_pred ceEEeecch-hhcccCccccccChhhhhhhhhccCCCHHHHHHhCCCCcccccccccCCCccccccCCCceEEEEeeeEE Confidence 23 333343 22456654321 00 11111111100 0011111 1111 Q ss_pred --------------CeEEEEEEcccc----------ccc-----ccceee--ccCCCcccccccccccCceeEEEEec-- Q lcl|Aclame:pro 173 --------------DGWQKFARPCFV----------QSS-----SRRRLV--TRISDSWVPVGDAVVTGSPPPVVVYQ-- 219 (456) Q Consensus 173 --------------~~~~~~~~~~~~----------~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~pv~~~~-- 219 (456) +.+..|...... ... ..+..+ ....+........+..++..|++++- T Consensus 235 ~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~le~~~~~p~~~fP~vP~~g~ 314 (708) T protein:vir:10 235 KESVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFHEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEHIPLIPVYGK 314 (708) T ss_pred EEEEEEEEEecCCCCceeeecchhhhhHHHHHHhcccchhheeeeeeEEEEEEeecchhhhccCCCCCCCceeeEEEeee Confidence 011111000000 000 000000 00011111122233334445555541 Q ss_pred --CCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccc-----ccccchhhhhhhhhhhhhccce Q lcl|Aclame:pro 220 --NPDG----MGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLP-----NVDENGNAIDYASIFEAAPGAL 288 (456) Q Consensus 220 --n~~~----~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~-----~~d~~g~~~~~~~~~~~~~~~~ 288 (456) ..+| .|.+..+++.++.+|...|.+...+........++.....+.. ..+.+..............|.+ T Consensus 315 r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 394 (708) T protein:vir:10 315 RWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAFLPLREVRDKSGNI 394 (708) T ss_pred eeccCCCcccceeecccchhHHHHHHHHHHHHHHHHhcCCcccccChhhhhhHHHHHhhccccchhhhcccccccccccc Confidence 1122 4778889999999999999987766543322222111110000 0000000000000011112221 Q ss_pred eecC-CCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 289 WELP-PGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAI 367 (456) Q Consensus 289 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~ 367 (456) .... +..++ + +......+...+......|-.+||+.+..+|. .+|.||+|+......-..........+..+.+++ T Consensus 395 ~~~~~~~~~~-q-~~~~~~~~~~l~q~~~~~i~~vsG~~~~~lG~-~sn~SG~aI~~rq~qg~~~l~~~~Dnl~~~~~~~ 471 (708) T protein:vir:10 395 IAGATPAGYT-Q-PAVMNQALAALLQQTSADIQEVTGGSQAMQQM-PSNIAQETVNNLMNRADMASFIYLDNMAKSLKRA 471 (708) T ss_pred ccccCCcccc-C-CccchHHHHHHHHHHHHHHHHHhCcChhHccC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1110 11111 1 11223456677778888888889999998885 5689999999988877777777777788887777 Q ss_pred HHHHHHh-------------cCCC-cc--------------------c-------cceEEecCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 368 LVKALQI-------------EGES-VE--------------------D-------TVDVSFESPDRVTLGEKYSAASLAK 406 (456) Q Consensus 368 ~~l~~~~-------------~g~~-~~--------------------~-------~i~v~f~~~~~~~~~e~ad~~~kl~ 406 (456) .++++.+ .|.. .. . +|.|.=.+..+.-..+.++.++.+. T Consensus 472 g~~lL~li~~~y~~er~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~yDv~i~~~p~~~s~r~~~~~~l~qll 551 (708) T protein:vir:10 472 GEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRDATVSVLTNVL 551 (708) T ss_pred HHHHHHHHHHHcCCCcEEEEecCCCCcceEEecceeccCCCcceeeeeccceeeEEEEEecccCchhHHHHHHHHHHHHH Confidence 6666542 1110 00 0 1111101111122334566666665 Q ss_pred hcCCCc-HHH------HHHhCCCC--ccHHHHH----------------------HHHHHH-HHHHHHh----------h Q lcl|Aclame:pro 407 AAGESW-ASI------RRNILNYN--ADQIKQD----------------------DLDRAR-EQITLFA----------G 444 (456) Q Consensus 407 ~~g~~s-~~t------~~~~~~~~--~~~~~~~----------------------e~~~~~-e~~~~~~----------~ 444 (456) ++..+. ..+ +++.+.+. ++-.+++ +++..+ ++..... . T Consensus 552 ~~~~p~~~~~~~~~~~~l~~~D~p~~~ei~erir~~~~~~~~~~~~~~ee~q~~~~~q~~~q~q~~~~~~e~qa~~~~~q 631 (708) T protein:vir:10 552 SSMLPTDPMRPAIQGIILDNIDGEGLDDFKEYNRNQLLISGIAKPRNEKEQQIVQQAQMAAQSQPNPEMVLAQAQMVAAQ 631 (708) T ss_pred HhcCCCchhhHHHHHHHHHhcCCcChHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 443221 111 11122111 1111111 000000 0000000 0 Q ss_pred cccccccCCCCC Q lcl|Aclame:pro 445 NPVQRPQEDGSR 456 (456) Q Consensus 445 ~~~~~~~~~Gs~ 456 (456) ...+...++..+ T Consensus 632 Ae~~ka~a~a~~ 643 (708) T protein:vir:10 632 AEAQKATNETAQ 643 (708) T ss_pred HHHHHHHHHHHH Confidence 000011111111 No 107 >protein:vir:8846 Length: 705 # NCBI annotation: putative portal protein # Family: family:all:1548 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775254;genbank:gi:27476052;genbank:GeneID:2700600 Probab=99.51 E-value=1.9e-12 Score=84.83 Aligned_cols=426 Identities=11% Similarity=0.040 Sum_probs=191.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMS--------RVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~--------~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |..+++++++..|...+..-.. ...+...||.|+..-. ..+ + ..+++.+.....|+....+|. T Consensus 7 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~y~g~~~~~----~~~---~--~s~~~~~~v~~~v~~~~~~l~ 77 (705) T protein:vir:88 7 IKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGN----ERP---G--KSGIVSRDVQETVDWIMPSLM 77 (705) T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCc----ccC---C--CCccccHHHHHHHHHHHHHHH Confidence 7888999877777655433322 2234568999985321 111 1 124666777777777777664 Q ss_pred ----c-C-Cccc--CCCccccHHHHHHH-----HHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCC-------------- Q lcl|Aclame:pro 73 ----P-N-GITV--GGSADSDLALRARR-----IWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDD-------------- 125 (456) Q Consensus 73 ----g-~-~~~~--~~~~d~~~~~~l~~-----~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~-------------- 125 (456) + + .|.+ ...+|.+..+.+.. +.+.|+....+..++++++++|.|++.||-+.. T Consensus 78 ~~~~~~~~~~~~~p~~~~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~dal~~g~gi~kv~we~~~~~~~e~~~~~~~~ 157 (705) T protein:vir:88 78 KVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSED 157 (705) T ss_pred HhhcCCCceEEEeeCChhHHHHHHHHHHHHhHHHhhccchhHHHHHHHHHHhhcCCeEEEeccccccchhhhhhccCChh Confidence 2 1 1222 22344444444333 345577777788999999999999887754221 Q ss_pred ----------------------------------CceEEEEEccceEEEEeeCCCCceeEEE-EEEEEec-C----Cc-- Q lcl|Aclame:pro 126 ----------------------------------GTATITADSPETMVVSVDPLQPWRIRAA-MRWWRDL-D----AE-- 163 (456) Q Consensus 126 ----------------------------------g~~~i~~~~p~~~~~i~d~~~~~~~~~~-i~~~~~~-~----~~-- 163 (456) |.+++..++|.++++-.+..+.....++ .+++... + +. T Consensus 158 ~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~V~p~d~~~dp~a~~~~d~~~~~~~~~~t~~dl~~~g~~~ 237 (705) T protein:vir:88 158 MVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPE 237 (705) T ss_pred hhhhhhhhhhhhcccccccccceeeeEEeeeeecCceeeeeccHHHceecCCCCCcccCcEEEEEEeccHHHHHhhcCCh Confidence 6678889999988755432222221111 2221100 0 00 Q ss_pred -----ee------------E-EE-------------EEeCC---eE--EEEEEccccc--cc-ccceeeccCCCcccccc Q lcl|Aclame:pro 164 -----SD------------F-AI-------------VWSGD---GW--QKFARPCFVQ--SS-SRRRLVTRISDSWVPVG 204 (456) Q Consensus 164 -----~~------------~-~~-------------~~~~~---~~--~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~ 204 (456) .. . .. .+.+. .+ +.+....... .. ..+..+. .+... . T Consensus 238 ~~~~~~~~~~~~~~~~~~e~~~~~~~d~~~~~~~~~~~~~~~~r~v~~~E~y~~~d~~~d~~~~~~~~~~--~g~~i-l- 313 (705) T protein:vir:88 238 DVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILY--VGDYI-I- 313 (705) T ss_pred hHhhhhhcccccchhhhhhhccccccccccccccccccccCCceeEEEEEeeeEecccCCcceeeEEEEE--eCccc-c- Confidence 00 0 00 00000 00 0000000000 00 0000000 01000 0 Q ss_pred cccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc-CCCccccccccchhhhhh Q lcl|Aclame:pro 205 DAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK-STEHGLPNVDENGNAIDY 277 (456) Q Consensus 205 ~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~-G~~~~~~~~d~~g~~~~~ 277 (456) ..+. ++.+|++.+ .+.+|.|.++.++++++.+|...+.+.+.+...++|...+. |... . T Consensus 314 ~~~~-~~~~PF~~~~~~p~~~~~~G~g~~~~~~d~Q~~~n~~~~~~~d~~~~~~~~~~~~~~g~v~-------------~ 379 (705) T protein:vir:88 314 SNEP-WDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVN-------------L 379 (705) T ss_pred cccc-CCCCCEEEecceeecCccccCChHHHHhHHHHHHHHHHHHHHHHHHhccCCceeccccccC-------------c Confidence 1111 233344322 34568999999999999999999999998888888754442 2110 1 Q ss_pred hhhhhhhccceeecCCCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccc----cccchHHHHHHHHHHHHHH Q lcl|Aclame:pro 278 ASIFEAAPGALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPD----SANQSAEGAHNIEKGFLFK 352 (456) Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~----~~n~Sg~Al~~~~~~l~~k 352 (456) .......+|.++.......+..++..++ ......+..+...+-..||+++...|.+ .+|.++.|+..+......+ T Consensus 380 ~d~~~~~pg~vv~~~~~~~i~~~~~~~~~~~~~~ll~~~~~~~~~~tGi~~~~~G~~~~~~~~~~Ta~~i~~~~~~~~~r 459 (705) T protein:vir:88 380 EDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQ 459 (705) T ss_pred ccccccCCCeeEEecCCCccccccCCcCcHHHHHHHHHHHHHHHHhhCCchHHcCCCcccccchhhHHHHHHHHHHHHHH Confidence 1112233555544443333333333332 2233445556666667899998887733 2355777887777777777 Q ss_pred HHHHHHHHHH-HHHHHHHHHH----HhcCCCc------------------cccceEEecCCCCCCHHHHHHHHHHHH--- Q lcl|Aclame:pro 353 CEDRLSIAKI-GLEAILVKAL----QIEGESV------------------EDTVDVSFESPDRVTLGEKYSAASLAK--- 406 (456) Q Consensus 353 ~~~~~~~f~~-~l~~~~~l~~----~~~g~~~------------------~~~i~v~f~~~~~~~~~e~ad~~~kl~--- 406 (456) .....+.|.. ++++++++++ ....... ..++.+.- .+...+..+....+..+. T Consensus 460 ~~~~~r~~a~~~~~~l~~~~~~li~~~~~~~~~~ri~g~~v~v~~~~~~~~~~v~v~v-~~~~~~~eq~~a~l~~ll~~~ 538 (705) T protein:vir:88 460 IDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTV-GIGNMNKDQQMLHLMRIWEMA 538 (705) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeccchhccchHhhccCCceEEee-ccccchHHHHHHHHHHHHHHH Confidence 7777777753 4454444443 3322110 01112211 111222222222221111 Q ss_pred h----cC----CCcHHH-------HHHhCCCCc--------cHHHHHHHHHHHH---------HHHHHhhcccccccCCC Q lcl|Aclame:pro 407 A----AG----ESWASI-------RRNILNYNA--------DQIKQDDLDRARE---------QITLFAGNPVQRPQEDG 454 (456) Q Consensus 407 ~----~g----~~s~~t-------~~~~~~~~~--------~~~~~~e~~~~~e---------~~~~~~~~~~~~~~~~G 454 (456) + .+ .++... +.+.+++.. ...+...++.... +..+.+. .+..+.+- T Consensus 539 q~l~~~~~~~~~~~~~~~~~~~~el~e~~~~k~~~~~~~~~~~~e~~~~~~~~~q~e~~~~~~~~~~q~e--~~k~q~e~ 616 (705) T protein:vir:88 539 QAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQAD--AQRAQSDA 616 (705) T ss_pred HHhhcccchhhhcChHHHHHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHH--HHHHHHHH Confidence 1 00 111111 111122110 0000000000000 0000000 00000000 Q ss_pred CC Q lcl|Aclame:pro 455 SR 456 (456) Q Consensus 455 s~ 456 (456) .+ T Consensus 617 ~~ 618 (705) T protein:vir:88 617 LA 618 (705) T ss_pred HH Confidence 00 No 108 >protein:vir:172 Length: 708 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112077;genbank:gi:13559867;genbank:GeneID:920970 Probab=99.46 E-value=2.5e-12 Score=84.23 Aligned_cols=442 Identities=13% Similarity=0.028 Sum_probs=187.0 Q ss_pred CCCCCHHHHHHHHHHHHHHH----HHHH-----HHHHHHhhccCcccccCcccchhhhhh-----hhhhcCChHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDG----MSRV-----RLLARYSNGDAPLPELTRNTSAAWRSF-----QREARTNWGLMVRDS 66 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~----~~~~-----~~~~~YY~g~~~i~~~~~~~~~~~~~~-----~~k~~~n~~~~iVd~ 66 (456) |+..+.. ++.++...+..- ...+ ++...||.|++-- ......++.. .-.++.|.++.+|+. T Consensus 1 ma~~~~~-~~~~~~~r~~~~~~~~~~~r~~~~~d~~f~~y~G~Qw~----~~~~~~l~~~~q~~~rP~~~~N~i~~~i~~ 75 (708) T protein:vir:17 1 MAETLEK-KHERIMLRFDRAYSPQQEVREKCIEATRFARVPGGQWE----GATAAGTKLDEQFEKYPKFEINKVATELNR 75 (708) T ss_pred CchhHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccCCCCCC----HHHHHHHHhhhhhcCCCceEEcchHHHHHH Confidence 7766554 566666554332 1111 2223689997631 1111111111 114678999999999 Q ss_pred HHHhhhcCCcccC---C--CccccHHHH----HHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC---C------CCce Q lcl|Aclame:pro 67 VADRIIPNGITVG---G--SADSDLALR----ARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR---D------DGTA 128 (456) Q Consensus 67 ~~~~l~g~~~~~~---~--~~d~~~~~~----l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~---~------~g~~ 128 (456) .+++-.-+...+. . .+|.+..+. +..+.+.|+.+..++.++.+++++|.||+-+..+ + +..+ T Consensus 76 v~g~e~~nr~d~~v~p~~~~~d~~~Ae~l~~l~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~~~~d~~~e~d~~~~~~~i 155 (708) T protein:vir:17 76 IIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDDRQRI 155 (708) T ss_pred HHhhHhhCCcceEEecCCCcchHHHHHHHHHHHHHHHHhcCchhHHhHHHHHhhhcccceeeeeecccccCCCCCCcccc Confidence 9999876654332 1 123333332 4445677899999999999999999999877432 2 1233 Q ss_pred EEEEE-cc-ceEEEEeeCCCCce-eE----EEEEEEEecC----------------------------CceeEEE-EEeC Q lcl|Aclame:pro 129 TITAD-SP-ETMVVSVDPLQPWR-IR----AAMRWWRDLD----------------------------AESDFAI-VWSG 172 (456) Q Consensus 129 ~i~~~-~p-~~~~~i~d~~~~~~-~~----~~i~~~~~~~----------------------------~~~~~~~-~~~~ 172 (456) .|..+ +| .++ +|||..... +. ++++.|.+.+ ....++. +|.. T Consensus 156 ~i~~~~~~~~~v--~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~~~~~~~d~vrv~e~~~r 233 (708) T protein:vir:17 156 AIEPIYDPSRSV--WFDPDAKKYDKSDALWAFCMYSLSPEKYEAEYGKKPPASLDVTSMTSWEYDWFDADVIYIAKYYEV 233 (708) T ss_pred ceEeeccchhhe--ecCccccccChhhhhhhhhhccCCHHHHHHhCccccchhhhhhhhccccccccCCCeEEEEEEEEE Confidence 44443 23 444 377654221 00 1111111100 0011111 1110 Q ss_pred ---------------CeEEEEEEccc----------cccc-----ccceee--ccCCCcccccccccccCceeEEEEec- Q lcl|Aclame:pro 173 ---------------DGWQKFARPCF----------VQSS-----SRRRLV--TRISDSWVPVGDAVVTGSPPPVVVYQ- 219 (456) Q Consensus 173 ---------------~~~~~~~~~~~----------~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~pv~~~~- 219 (456) +.++.|..... +... ..+..+ -...+........+..++..|++++- T Consensus 234 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~l~~~~~~p~~~fP~vP~~g 313 (708) T protein:vir:17 234 RKESVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFQEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEHIPLIPVYG 313 (708) T ss_pred eeeeeEEEEEecCccCceeeeCccchhhHHHHHHhcccccceeeeeeEEEEEEEeecccccccCCCCCCCCccceEEEec Confidence 01111100000 0000 000000 00111111222222233344444431 Q ss_pred ---CCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh-----hcCCCcc--ccccccchhhhhhhhhhhhhc Q lcl|Aclame:pro 220 ---NPDG----MGEVEPHIDIINRINRAELQLLSTMAIQAFRQRA-----LKSTEHG--LPNVDENGNAIDYASIFEAAP 285 (456) Q Consensus 220 ---n~~~----~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~-----i~G~~~~--~~~~d~~g~~~~~~~~~~~~~ 285 (456) ..+| -|-+..+++.++.+|...|.+...+........+ +.|.... ....+... .. ...... T Consensus 314 ~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~a~~g~~~~~~~~~~~~~~--~~---~~~~~~ 388 (708) T protein:vir:17 314 KRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPA--FL---PLREVR 388 (708) T ss_pred ccccccCCCcccchhhhchhHHHHHHHHHHHHHHHHHhcCCcceeechhhhhhhHHhhhhcccchhh--hh---hhhccC Confidence 1122 3667889999999999999987766443332211 1222110 00000000 00 000001 Q ss_pred cceeecCCCcc-eeeccc-cchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 286 GALWELPPGVD-IWESQA-NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIG 363 (456) Q Consensus 286 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~ 363 (456) +.+..+..++. ...++. .-.+.+...+......|-.+||+.+..+|. .+|.||+|+...-..-..........+..+ T Consensus 389 ~~~g~v~~~a~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGi~d~~~G~-~sn~SG~Ai~~rq~qg~~~~~~~~Dnl~~~ 467 (708) T protein:vir:17 389 DKYGNIIAGATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQM-PSNIAQETVNNLMNRADMASFIYLDNMAKS 467 (708) T ss_pred CcccccccccCCcccCCCccccHHHHHHHHHHHHHHHHhcCCChHHccC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11111111111 111111 122456677788888888889999998886 568999999988877777776777777777 Q ss_pred HHHHHHHHHH----hc---------CCC-ccc--------------------cc-----eEEecCCCCCC---HHHHHHH Q lcl|Aclame:pro 364 LEAILVKALQ----IE---------GES-VED--------------------TV-----DVSFESPDRVT---LGEKYSA 401 (456) Q Consensus 364 l~~~~~l~~~----~~---------g~~-~~~--------------------~i-----~v~f~~~~~~~---~~e~ad~ 401 (456) .+++.++++. +. |.. ... ++ .|.= +..|.+ ..+..+. T Consensus 468 ~~~~g~~lL~lI~~~y~~~R~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~~Dv~v-~~~p~~~t~r~~~~~~ 546 (708) T protein:vir:17 468 LKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTV-DVGPSYTARRDATVSV 546 (708) T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecceeccCCCccceeeccceeeeeeEEE-ecccCchhHHHHHHHH Confidence 6666555543 22 110 000 00 0100 111222 2234445 Q ss_pred HHHHHhcCCCc---HHH----HHHhCCCC--ccHH--------------------HHH--HHHHHHHH-HHHH---hhc- Q lcl|Aclame:pro 402 ASLAKAAGESW---ASI----RRNILNYN--ADQI--------------------KQD--DLDRAREQ-ITLF---AGN- 445 (456) Q Consensus 402 ~~kl~~~g~~s---~~t----~~~~~~~~--~~~~--------------------~~~--e~~~~~e~-~~~~---~~~- 445 (456) ++++.++.-+. ... +++.+.+. ++.. .++ +++..+.+ .... +.. T Consensus 547 l~qll~~~~~~~~~~~~~~~l~l~~~D~p~~~ei~e~ir~~~~~~~~~~~~~~e~~q~~~q~qq~~q~q~~~~~~eaqa~ 626 (708) T protein:vir:17 547 LTNVLSSMLPADPMRPAIQGIILDNIDGEGLDDFKEYNRNQLLISGIAKPRNEKEQQIVQQAQMAAQSQPNPEMVLAQAQ 626 (708) T ss_pred HHHHHHhcCCccchhHHHHHHHHHhcCCCChHHHHHHHHHHhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55554332111 100 11211111 0000 000 00000000 0000 000 Q ss_pred ------ccccccCCCCC Q lcl|Aclame:pro 446 ------PVQRPQEDGSR 456 (456) Q Consensus 446 ------~~~~~~~~Gs~ 456 (456) .......+..+ T Consensus 627 ~~~~qAe~~ka~aea~~ 643 (708) T protein:vir:17 627 MVAAQAEAQKATNETAQ 643 (708) T ss_pred HHHHHHHHHHHHHHHHH Confidence 00000010000 No 109 >protein:vir:77597 Length: 725 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063735;genbank:gi:51236726;genbank:GeneID:2944241 Probab=99.42 E-value=7e-12 Score=81.75 Aligned_cols=441 Identities=11% Similarity=-0.063 Sum_probs=190.0 Q ss_pred CCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDD-------GMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~-------~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) |.+. ...+.++...+.. -+.....-.+||.|++--. .....++. ..+.++|.++.+|+..+++-.- T Consensus 1 m~d~--~~~~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw~~----~~~~~l~~-q~rp~~N~i~~~i~~v~g~~~~ 73 (725) T protein:vir:77 1 MADN--ENRLESILSRFDADWTASDEARREAKNDLFFSRVSQWDD----WLSQYTTL-QYRGQFDVVRPVVRKLVSEMRQ 73 (725) T ss_pred CCch--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCCCH----HHHHHHHh-cCCCccccHHHHHHHHHhhHHh Confidence 6653 3345544433322 2223344478999986422 11112222 2234679999999999998876 Q ss_pred CCcccC----CCccccHHHH----HHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC---C---CCceEEEEEc----c Q lcl|Aclame:pro 74 NGITVG----GSADSDLALR----ARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR---D---DGTATITADS----P 135 (456) Q Consensus 74 ~~~~~~----~~~d~~~~~~----l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~---~---~g~~~i~~~~----p 135 (456) +...+. ..+|.+..+. +..+.+.|+.+...+.++.+++++|.||+-|..| + +++.+|...+ | T Consensus 74 nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~i~~~~~~~~~ 153 (725) T protein:vir:77 74 NPIDVLYRPKDGARPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSNNQVIRREPIHSAC 153 (725) T ss_pred CCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhcCcceeeeeecccCCCCCCCceeeEEeecccCh Confidence 654332 2223333332 3445667899999999999999999999877533 2 2344554442 3 Q ss_pred ceEEEEeeCCCCce-e----EEEEEEEEecC--------------------------------CceeEEEEEeCCeEEEE Q lcl|Aclame:pro 136 ETMVVSVDPLQPWR-I----RAAMRWWRDLD--------------------------------AESDFAIVWSGDGWQKF 178 (456) Q Consensus 136 ~~~~~i~d~~~~~~-~----~~~i~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~ 178 (456) .+ ++|||..... + .++++.|.+.+ .....+.+|....+... T Consensus 154 ~~--v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vrv~E~~~r~~~~~~ 231 (725) T protein:vir:77 154 SH--VIWDSNSKLMDKSDARHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAEFYEVVEKKET 231 (725) T ss_pred hh--ceeCchhhccChhhHHHHHHHhcCCHHHHHHHHhhCCcchhhcccccccccccccccCCCeeEEEEEEEEEEEeeE Confidence 32 4566543211 0 01111111100 00111222221111100 Q ss_pred E--E-cccc------ccc-----------ccc----------eeec--cCCCcccccccccccCceeEEEEe----cCCC Q lcl|Aclame:pro 179 A--R-PCFV------QSS-----------SRR----------RLVT--RISDSWVPVGDAVVTGSPPPVVVY----QNPD 222 (456) Q Consensus 179 ~--~-~~~~------~~~-----------~~~----------~~~~--~~~~~~~~~~~~~~~~~~~pv~~~----~n~~ 222 (456) . . .... +.. .+. +.+. ...|.....+..+...+.+|+|++ .... T Consensus 232 ~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~rv~~~~~~g~~~l~~~~~~~~~~~P~vP~~g~r~~~~ 311 (725) T protein:vir:77 232 AFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVPVFGEWGFVE 311 (725) T ss_pred EEEecCCCCcceeecChhhHHHHHHHhhhcCchhhhhcccceeeeeEeeecCceeeccCCcCCCCccceEEEeeeeeccC Confidence 0 0 0000 000 000 0000 001111111222222233344432 1222 Q ss_pred C----CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCC---- Q lcl|Aclame:pro 223 G----MGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG---- 294 (456) Q Consensus 223 ~----~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---- 294 (456) | .|-+..+++.++.+|...|.....+....... ..|.. +. .+..-.....................+ T Consensus 312 g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~--~~~~~-~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 386 (725) T protein:vir:77 312 DKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKK--PFFWP-EQ--IAGFEHMYDGNDDYPYYLLNRTDENSGDLPT 386 (725) T ss_pred CcccccchhhhhhhHHHHHHHHHHHHHHHHHhccccc--cccch-hh--hhHHHHHHHhccCCceecccccccCCCcccc Confidence 3 37788999999999999998776554322211 11111 10 000000000000000000000111111 Q ss_pred cceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 295 VDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQ 373 (456) Q Consensus 295 ~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~ 373 (456) .++...+..++ ..+...++.....|-.+||+.+..+|..+++.||+|+...-......+......|..+.+++.++++. T Consensus 387 ~~i~~~~~~~lp~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~~~~~~Dnl~~~~~~~g~~lL~ 466 (725) T protein:vir:77 387 QPLAYYENPEVPQANAYMLEAATSAVKEVATLGVDTEAVNGGQVAFDTVNQLNMRADLETYVFQDNLATAMRRDGEIYQS 466 (725) T ss_pred cCccccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 12222333333 45666777777888888999999999887778999999998888888777778888888777666554 Q ss_pred h----c---------CCC-cc--------------------------ccceEEecCCCCCC-HHHHHHHHHHHHhcC--C Q lcl|Aclame:pro 374 I----E---------GES-VE--------------------------DTVDVSFESPDRVT-LGEKYSAASLAKAAG--E 410 (456) Q Consensus 374 ~----~---------g~~-~~--------------------------~~i~v~f~~~~~~~-~~e~ad~~~kl~~~g--~ 410 (456) + . |.. .. +++.|.=. |...+ ..+.++.++.+.++. . T Consensus 467 lI~~~~~~~rv~RI~~ed~~~~~v~in~~~~~~~~G~~~~~NDi~g~~Dv~v~~~-p~~~s~r~~~~~~l~qll~~~~~~ 545 (725) T protein:vir:77 467 IVNDIYDVPRNVTITLEDGSEKDVQLMAEVVDLATGEKQVLNDIRGRYECYTDVG-PSFQSMKQQNRAEILELLGKTPQG 545 (725) T ss_pred HHHHHcCCCcEEEEecCCCCcceeeecccccccccchhHhhhhhccceeeEEeec-cchHHHHHHHHHHHHHHHHhcccc Confidence 2 1 110 00 01111100 11111 223444455554321 1 Q ss_pred CcH--HHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcc-------------------------------cccccCCCCC Q lcl|Aclame:pro 411 SWA--SIRRNILNYNADQIKQDDLDRAREQITLFAGNP-------------------------------VQRPQEDGSR 456 (456) Q Consensus 411 ~s~--~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~-------------------------------~~~~~~~Gs~ 456 (456) .+. .++...+.....+..+..+++.+.+........ ....+++-.| T Consensus 546 ~~~~~~~l~~~~~l~d~~~~~e~~erirkq~~~~~~~q~~~~~e~q~~~~~qq~~~~q~~~e~~q~q~~~~~~qa~~~k 624 (725) T protein:vir:77 546 TPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAK 624 (725) T ss_pred chhHHHHHHHhhccccchHHHHHHHHHHhhhhhhhccCCCChhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH Confidence 010 111111111110000000111110000000000 0000111111 No 110 >protein:vir:105520 Length: 706 # NCBI annotation: phage portal protein # Family: family:all:487 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516189;genbank:gi:89885992;genbank:GeneID:3964380 Probab=99.42 E-value=6e-12 Score=82.10 Aligned_cols=445 Identities=12% Similarity=0.005 Sum_probs=193.4 Q ss_pred CCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHh--hccCcccccCcccchhhhhh-----hhhhcCChHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDG-------MSRVRLLARYS--NGDAPLPELTRNTSAAWRSF-----QREARTNWGLMVRDS 66 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~-------~~~~~~~~~YY--~g~~~i~~~~~~~~~~~~~~-----~~k~~~n~~~~iVd~ 66 (456) ||..+- +++.++...+... +.+...-.+|| .|++--. .....++.. ...++.|.++.+|+. T Consensus 1 m~e~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~d~~f~~~~G~QW~~----~~~~~l~~~~q~~grP~~~~N~i~~~v~~ 75 (706) T protein:vir:10 1 MAESRQ-KQHERVMLRFDRAWSPQQVVREKCIEATRFVRVPGGQWEG----ATVAGTKLDEQFEKYPKFEINKVATELNR 75 (706) T ss_pred CCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCCH----HHHHHHHhhhhhcCCCceEecchHHHHHH Confidence 887444 4566665554432 22222224565 5665322 111111111 114778999999999 Q ss_pred HHHhhhcCCcccC----CC-ccccHHH----HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC-------C--Cce Q lcl|Aclame:pro 67 VADRIIPNGITVG----GS-ADSDLAL----RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD-------D--GTA 128 (456) Q Consensus 67 ~~~~l~g~~~~~~----~~-~d~~~~~----~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~-------~--g~~ 128 (456) .+++..-+.+.+. .. .|.+..+ .+..+++.|+.+.....++.+++++|.||+-+..+- . +++ T Consensus 76 v~g~~~~nr~~~~v~P~~~~~d~~~Ae~l~~l~~~~~~~~~~~~a~s~Af~d~i~~G~G~~ev~~d~~~~~d~~~~~~~i 155 (706) T protein:vir:10 76 IISEYRNNRISVKFRPGDNAASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTTSFVNEYDPMDERQRI 155 (706) T ss_pred HhhHHHhCCCceEEecCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCcceEEeeeccccccCCCCCCccc Confidence 9999887754432 11 1222222 244556779999999999999999999999885431 1 233 Q ss_pred EEEEE-ccceEEEEeeCCCCc----eeE-EEEEEEEecC----------------------------CceeEEEEEeCCe Q lcl|Aclame:pro 129 TITAD-SPETMVVSVDPLQPW----RIR-AAMRWWRDLD----------------------------AESDFAIVWSGDG 174 (456) Q Consensus 129 ~i~~~-~p~~~~~i~d~~~~~----~~~-~~i~~~~~~~----------------------------~~~~~~~~~~~~~ 174 (456) .+..+ +|.. .++|||.... ... ++.+.|.+.+ +.......|.... T Consensus 156 ~i~~v~~p~~-~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~fp~~~~~~~~~~~~~~~~d~~~~d~~~~~eyy~~~~ 234 (706) T protein:vir:10 156 AVEPIYDPAR-SVWFDPDAKKYDKSDALWAFCMYSVSLEKYQSEYDKAPTSLDRVGSVSWQYDWFTPDVVYIAKYYEVRK 234 (706) T ss_pred eeeeeccchh-ceecCchhcccChhhcceEeeeecCCHHHHHHhcCCChhhhhhhccccccccccCCCcceecccccccc Confidence 34333 4554 3556764321 111 1122121110 0001111121111 Q ss_pred ----EEEEEEcccc-----cccccceee-----------------------ccCCCcccccccccccCceeEEEEec--- Q lcl|Aclame:pro 175 ----WQKFARPCFV-----QSSSRRRLV-----------------------TRISDSWVPVGDAVVTGSPPPVVVYQ--- 219 (456) Q Consensus 175 ----~~~~~~~~~~-----~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~pv~~~~--- 219 (456) +..|...... ......... ....+.....+..+...+.+|++++- T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~g~~~l~~~~p~~~~~~P~vP~~g~r 314 (706) T protein:vir:10 235 ESVDVISYRQPLTQEIATYDSEQIADIQDELEQAGFEEIGRRSVKRRRIYVAVVDGDGFLEKPRRIPGEHIPLIPVYGKR 314 (706) T ss_pred eeEEEEEeeccccCCceeeccchhhhhHHHHhhCCchhhhhcccceeeEEEEeeccccccccCCCCCCCccceEEEeecc Confidence 0111110000 000000000 00011111112222333445555441 Q ss_pred -CCC----CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccc-ccchhh--h--hhh--hhhhhhccc Q lcl|Aclame:pro 220 -NPD----GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNV-DENGNA--I--DYA--SIFEAAPGA 287 (456) Q Consensus 220 -n~~----~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~-d~~g~~--~--~~~--~~~~~~~~~ 287 (456) ..+ ..|-+..+++.++.+|..+|.+...+..... ..-.|........ .....+ . ... .......|. T Consensus 315 ~~~d~~~~~~G~vr~~~d~Q~~~N~~~s~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 392 (706) T protein:vir:10 315 WFIDDVERVEGHIAKAMDPQRLYNLQVSMLADAAAQDPG--QTPIVDMEQIRGLEQHWEGRNRKRPAFLPLRTVTDKTGN 392 (706) T ss_pred ccccccCcccceeccchhhHHHHHHHHHHHHHHHHhcCC--cccccchhHHHHHHHHhhhcccccccchhcccccCCCCc Confidence 112 3477788999999999999998776432211 1111111100000 000000 0 000 000011111 Q ss_pred eeecCCCcceeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 288 LWELPPGVDIWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEA 366 (456) Q Consensus 288 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~ 366 (456) +.. +......++.. -.+.+...+......|-.+||+.+..+|. .+|.||+|+......-..........|..+.++ T Consensus 393 i~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vsGi~~~~lG~-~sn~SG~Ai~~rq~qg~~~~~~~~Dnl~~~~~~ 469 (706) T protein:vir:10 393 VVA--PANVAGYTQAPVLNQALAALLQQTSADIQEVTGSSQAMQQM-PSNVARETVNSLLNRSDMASFIYLDNMAKSLKR 469 (706) T ss_pred ccc--cccccccCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 111 11111111211 22345666777777888889999998885 457999999998888777777788888888887 Q ss_pred HHHHHHHh----c---------CCCcc---------------------ccc-------eEEecCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 367 ILVKALQI----E---------GESVE---------------------DTV-------DVSFESPDRVTLGEKYSAASLA 405 (456) Q Consensus 367 ~~~l~~~~----~---------g~~~~---------------------~~i-------~v~f~~~~~~~~~e~ad~~~kl 405 (456) +.++++.+ . |.... .++ .|.=.+..+.-..+..+.++.+ T Consensus 470 ~g~~lL~li~~~y~~~R~~RI~~ed~~~~~v~in~~~~d~~~G~~~~~nDi~~g~yDv~i~~~p~~~t~r~~~~~~m~el 549 (706) T protein:vir:10 470 AGEIWLSMAREIYGSDREVRIVHEDGTDDIALMNAAVLDNQTGRVVALNDLSTGRYDVSVDVGPSYSARRDATVNALTQL 549 (706) T ss_pred HHHHHHHHHHHHcCCCcEEEEecCCCCccceeeccceeccccCceeeeecceeeeEEEEEecccCcchHHHHHHHHHHHH Confidence 76665542 1 11000 001 1110111112244556666666 Q ss_pred HhcCCCc-HHH------HHHhCCCC--ccHHHHHH--------------------H-HHHHHH--HHH-Hhhcc--cccc Q lcl|Aclame:pro 406 KAAGESW-ASI------RRNILNYN--ADQIKQDD--------------------L-DRAREQ--ITL-FAGNP--VQRP 450 (456) Q Consensus 406 ~~~g~~s-~~t------~~~~~~~~--~~~~~~~e--------------------~-~~~~e~--~~~-~~~~~--~~~~ 450 (456) .+++.+- ..+ +++.+.+. ++-.+++. + ..+.++ .+. +.... .... T Consensus 550 ~~~~~p~~~~~~~l~~~~~~~~d~p~~~e~~e~irk~~~~q~~~~~~~~~eq~~~~q~qq~q~~q~~~~~~~~~aq~~~~ 629 (706) T protein:vir:10 550 LQGMLPQDPMRPALMGIIIDNMEGEGLDDFKAFNRRQLLTQGIVKPRNQQEQAIVQQAQQAQATQPDPNMLLAQAQMVVA 629 (706) T ss_pred HHhcCCcchhhHHHHHHHHhhcCccchHHHHHHHHHhhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 6543221 111 22222221 11111110 0 000000 000 00000 0011 Q ss_pred cCCCCC Q lcl|Aclame:pro 451 QEDGSR 456 (456) Q Consensus 451 ~~~Gs~ 456 (456) +++-.| T Consensus 630 qA~~~k 635 (706) T protein:vir:10 630 QAEAQK 635 (706) T ss_pred HHHHHH Confidence 111112 No 111 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=99.40 E-value=1.8e-11 Score=79.54 Aligned_cols=427 Identities=11% Similarity=0.051 Sum_probs=183.6 Q ss_pred CCC--------CCHHHHHHHHHHHHHHHHHH-------H----------HHHHHHhhccCcccccCcccchhhhhhhhhh Q lcl|Aclame:pro 1 MTA--------STPAEWLPVLTKRIDDGMSR-------V----------RLLARYSNGDAPLPELTRNTSAAWRSFQREA 55 (456) Q Consensus 1 ~~~--------~t~~~~~~~l~~~~~~~~~~-------~----------~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~ 55 (456) .|. ..++.+...|.+++...... . .++.+||.|...-. ...+... -.+++ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~~~y~~~~~~~~----~~~~~~~-~rs~~ 79 (651) T protein:vir:80 5 TTTTDKNRQTYDETHDVSSYVKKEYKRFCDARQVCEETWLEAWGMYLSTPEAQDYLRDQVLRS----VGDVNAD-WRHKI 79 (651) T ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcccHHHHHhhccccccc----cCCCCCC-CCccc Confidence 111 12233444444444332221 1 13456666653211 1111111 12358 Q ss_pred cCChHHHHHHHHHHhhhcC---C---cccCCCccccHHH----HHHHHH----HhcChhHHHHHHHHHHhhCCeeEEEEE Q lcl|Aclame:pro 56 RTNWGLMVRDSVADRIIPN---G---ITVGGSADSDLAL----RARRIW----RDNRMDSVCKQWVKYGLDFGESYLTCW 121 (456) Q Consensus 56 ~~n~~~~iVd~~~~~l~g~---~---~~~~~~~d~~~~~----~l~~~~----~~n~~~~~~~~~~~~~~~~G~a~~~v~ 121 (456) +.+.+...|+.....|... + |.+....|.+... .+..++ .+++|......+..+++++|.|++.|| T Consensus 80 ~~~~v~~~ve~~~~~l~~~~~~~~~~~~~~p~~~~d~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~l~~G~~i~kv~ 159 (651) T protein:vir:80 80 TTGKAFEAIETIHAYLMSATFPNKNWFDVVPAKPGQDNLLVSRLIKRYVQDKLTEGKFRAAYANFLRQLLITGNSVLALP 159 (651) T ss_pred cChhHHHHHHHHHHHHHHhhcCCCceeEeccCCchhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhcccCceEEEEe Confidence 8899999999888887642 1 2222222222211 133343 467888899999999999999988775 Q ss_pred eCC-------------------------------CCceEEEEEccceEEEEeeCCCCc--eeEEEEEEEEe-cC------ Q lcl|Aclame:pro 122 RRD-------------------------------DGTATITADSPETMVVSVDPLQPW--RIRAAMRWWRD-LD------ 161 (456) Q Consensus 122 ~~~-------------------------------~g~~~i~~~~p~~~~~i~d~~~~~--~~~~~i~~~~~-~~------ 161 (456) -+. .|.++++.++|.++++ |+..+. ....+.+.+.. .+ T Consensus 160 we~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~~--dp~a~~~~d~~~v~~~~~t~~~l~~l~~ 237 (651) T protein:vir:80 160 WRVETAEVKKKVQVRTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDCFY--DPNVTDPNRGAFIRKLTKTKADILNLLS 237 (651) T ss_pred ecceeeeeehheeccccccccccceeeeccceeeeceeEEEEecHHHeee--cCCCcCccccceeeeeeeeHHHHHHHHh Confidence 321 2567899999999875 443322 12222222210 00 Q ss_pred -Cce---------eEE--------------------EEEeC---CeEEEEEEcccccccccceeeccCCCcccc-ccccc Q lcl|Aclame:pro 162 -AES---------DFA--------------------IVWSG---DGWQKFARPCFVQSSSRRRLVTRISDSWVP-VGDAV 207 (456) Q Consensus 162 -~~~---------~~~--------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 207 (456) +.. ... .-+.+ ..+|++..............+....+.... ....+ T Consensus 238 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~~~~~d~e~~~~~~~~v~~~g~~il~~~~~~ 317 (651) T protein:vir:80 238 EGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEYWGDIHLENKTYHDVVVTIMGNEVLRFEQNP 317 (651) T ss_pred cccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEEEEEeeccCCceEEEEEEEcCcEEecccccC Confidence 000 000 00000 012222111111110111111111111111 11111 Q ss_pred ccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhh Q lcl|Aclame:pro 208 VTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIF 281 (456) Q Consensus 208 ~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~ 281 (456) ..-+. |++.+ ....|.|.++.+++.+..+|.....+...+...+.|...+...... ++ ..+ T Consensus 318 ~~~~~-Pf~~~~~~~~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v~~d~~~--------~~----~~l 384 (651) T protein:vir:80 318 YWCGR-PFVIGTYIPTARQPYAMGALQPNLGMLHELNIITNQRLDNLELAIDQMYTLRSDGLL--------QP----EDV 384 (651) T ss_pred CCCCC-CeeeecceecCccccCCChHHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCccc--------cH----HHh Confidence 11123 33322 1346899999999999999999999999999888887554211100 00 011 Q ss_pred hhhccceeecCCCcceeecc--ccchHHHHHHHHHHHHHHHhhcCCChhhhcc--c-cccchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 282 EAAPGALWELPPGVDIWESQ--ANDFTPMLSAIKEHIRQLSSATKTPLPMLMP--D-SANQSAEGAHNIEKGFLFKCEDR 356 (456) Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~--~-~~n~Sg~Al~~~~~~l~~k~~~~ 356 (456) ...+|.++..+...++..++ ..+.......+..+...+...++++....|. . ..+.++.+++.....+....... T Consensus 385 ~~~pg~vi~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~~TAteI~~~~~~~~~~l~~v 464 (651) T protein:vir:80 385 YTEPGKVFLVSDHGDLQPLANQSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSGERVTAAEVAAVREAGGNRLSGI 464 (651) T ss_pred hcCCCceEEecCCCCceeeccCcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhhccHHHHHHHHHHHHHHHHHH Confidence 22345555443333333322 2333333445666666677778888765542 2 23456666666666666666655 Q ss_pred HHHHHH-H----HHHHHHHHHHhcCCCcc------------------ccceEEec--CCCCCCHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 357 LSIAKI-G----LEAILVKALQIEGESVE------------------DTVDVSFE--SPDRVTLGEKYSAASLAKAAGES 411 (456) Q Consensus 357 ~~~f~~-~----l~~~~~l~~~~~g~~~~------------------~~i~v~f~--~~~~~~~~e~ad~~~kl~~~g~~ 411 (456) -+.|.. . +++++.++.+....+.. .++.+.+. ...+....+....+.++.+ T Consensus 465 ~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~ri~~~~~~~~~~~~i~~~dl~~~~~iv~~g~~~~~~r~~~~~~l~~---- 540 (651) T protein:vir:80 465 HKHIEETSLLVLLEKVMHLVQQFTDQPGMVRVAGDEAGAYEYYELDVEDLQKEVRLVPIGSDHVIERKQYIEDRLT---- 540 (651) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccceeecccccccccccccCccceeeeeeeeeccHHHHHHHHHHHHHHHH---- Confidence 555554 3 34455555443211110 11111111 1111112222222222211 Q ss_pred cHHHHHHhCCCCcc-----HHHHHHHHHHHHHHH-----HHhhcccccccCCCCC Q lcl|Aclame:pro 412 WASIRRNILNYNAD-----QIKQDDLDRAREQIT-----LFAGNPVQRPQEDGSR 456 (456) Q Consensus 412 s~~t~~~~~~~~~~-----~~~~~e~~~~~e~~~-----~~~~~~~~~~~~~Gs~ 456 (456) ++..++-+++ ...++.++ ..+.++ .+...+.+.+...-.+ T Consensus 541 ----~~q~~~~~p~~~~~~~~~~~~~~-l~~~~g~~~~~~~l~~~~q~~~~~~~~ 590 (651) T protein:vir:80 541 ----FIQAVAQVPEMGQLVDYKRILVD-LLQHWGFEEPEAYLKQQDQQAPANPQE 590 (651) T ss_pred ----HHHhhccCCccchhhhHHHHHHH-HHHHcCCCCcHHhcCCCccchhhhhhH Confidence 1111221221 11222111 111111 0111111111111011 No 112 >protein:vir:100920 Length: 725 # NCBI annotation: Gp1 # Family: family:all:487 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006406;genbank:gi:46358698;genbank:GeneID:2777070 Probab=99.35 E-value=5e-11 Score=77.08 Aligned_cols=439 Identities=10% Similarity=-0.064 Sum_probs=187.1 Q ss_pred CCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDD-------GMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~-------~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) |.+. ...+.++...+.. -+....+-.+||.|++--. .....++. ..+.++|.++.+|+..+++-.- T Consensus 1 m~d~--~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~QW~~----~~~~~l~~-q~rp~~N~i~~~v~~v~g~e~~ 73 (725) T protein:vir:10 1 MADN--ENRLESILSRFDADWTASDEARREAKNDLFFSRVSQWDD----WLSQYTTL-QYRGQFDVVRPVVRKLVSEMRQ 73 (725) T ss_pred CCch--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCH----HHHHHHHh-cCCCcccchHHHHHHHHhhHHh Confidence 6553 3345555443322 2223344578999986321 11112222 2234679999999999999776 Q ss_pred CCcccC----CCccccHHHH----HHHHHHhcChhHHHHHHHHHHhhCCeeEEEEE---eCCC---CceEEEEE----cc Q lcl|Aclame:pro 74 NGITVG----GSADSDLALR----ARRIWRDNRMDSVCKQWVKYGLDFGESYLTCW---RRDD---GTATITAD----SP 135 (456) Q Consensus 74 ~~~~~~----~~~d~~~~~~----l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~---~~~~---g~~~i~~~----~p 135 (456) +...+. ..+|.+..+. +..+.+.|+.+...+.++.+++++|.||+-|. .+++ ++.+|..+ ++ T Consensus 74 nr~d~~v~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~i~~~~i~~~~ 153 (725) T protein:vir:10 74 NPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSNNQVIRREPIHSAC 153 (725) T ss_pred CCcceEEecCCcchHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHhhcCcceeeeeccccCCCCCCCceeeeeeecccCH Confidence 643322 2233333333 34456678999999999999999999998774 3332 34444443 23 Q ss_pred ceEEEEeeCCCCce----eE-EEEEEEEec---------CC-----------------------ceeEEEEEeCCeEE-- Q lcl|Aclame:pro 136 ETMVVSVDPLQPWR----IR-AAMRWWRDL---------DA-----------------------ESDFAIVWSGDGWQ-- 176 (456) Q Consensus 136 ~~~~~i~d~~~~~~----~~-~~i~~~~~~---------~~-----------------------~~~~~~~~~~~~~~-- 176 (456) .++ +|||..... .. ++++.|.+. .+ ....+.+|....+. T Consensus 154 ~~v--~~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vrv~E~~~r~~~~~~ 231 (725) T protein:vir:10 154 SHV--IWDSNSKLMDKSDARHCTVIHSMSQNGWDDFAEKYDLDADNIPSFQNPNDWVFPWLTQDTIQIAEFYEVVEKKET 231 (725) T ss_pred hHc--ccCchhhccChhhhhhhhhhccCCHHHHHHHHHhCCCcccccccccccccccccccCCCeEEEEEEEEEEEEeeE Confidence 333 366643211 01 111122110 00 00001111110000 Q ss_pred EEEE-cccccccccc---------------------------eeec-c-CCCcccccccccccCceeEEEEe----cCCC Q lcl|Aclame:pro 177 KFAR-PCFVQSSSRR---------------------------RLVT-R-ISDSWVPVGDAVVTGSPPPVVVY----QNPD 222 (456) Q Consensus 177 ~~~~-~~~~~~~~~~---------------------------~~~~-~-~~~~~~~~~~~~~~~~~~pv~~~----~n~~ 222 (456) .+.. .........+ +.+. . ..|.....+..+...+.+|++++ .... T Consensus 232 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~~fP~vP~~g~r~~~~ 311 (725) T protein:vir:10 232 AFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVPVFGEWGFVE 311 (725) T ss_pred EEEeccCCCCceeecchhhhHHHHHHhhcccchhhhhccceeeEEEEEeecchhhhcCCCCCCCCceeEEEEEeeeeccC Confidence 0000 0000000000 0000 0 01111111222223333444443 1122 Q ss_pred ----CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccc------ccchhhhhhhhhhhhhccceeecC Q lcl|Aclame:pro 223 ----GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNV------DENGNAIDYASIFEAAPGALWELP 292 (456) Q Consensus 223 ----~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~------d~~g~~~~~~~~~~~~~~~~~~~~ 292 (456) ..|-+..+++.++.+|...|.....+....... ..|. .+.... ..++.++..........|.+ T Consensus 312 g~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~--~~~~-~~~i~~~e~~~~~~~~~~~~~~~~~~~~~g~~---- 384 (725) T protein:vir:10 312 DKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKK--PFFW-PEQIAGFEHMYDGNDDYPYYLLNRTDENNGEM---- 384 (725) T ss_pred CcceeeeeeccchhHHHHHHHHHHHHHHHHHhcCCcc--cccc-HhhhhHHHHHHhccCCceeeecccccccCccc---- Confidence 338889999999999999988776554322211 1111 000000 00000000000000011111 Q ss_pred CCcceeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 PGVDIWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKA 371 (456) Q Consensus 293 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~ 371 (456) +...+...+.. -...+...+......|-.+||+.+..+|..+++.||+|+.................+..+.+++.+++ T Consensus 385 ~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~l~~~~Dnl~~~~~~~g~~l 464 (725) T protein:vir:10 385 PTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRADLETYVFQDNLATAMRRDGEIY 464 (725) T ss_pred ccccCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 00111111212 23456677888888888899999999998877789999999887777777777777777777766655 Q ss_pred HHh----c---------CCC-cc--------------------------ccceEEecCCCCCC-HHHHHHHHHHHHhc-C Q lcl|Aclame:pro 372 LQI----E---------GES-VE--------------------------DTVDVSFESPDRVT-LGEKYSAASLAKAA-G 409 (456) Q Consensus 372 ~~~----~---------g~~-~~--------------------------~~i~v~f~~~~~~~-~~e~ad~~~kl~~~-g 409 (456) +.+ . |.. .. +++.|.=.+ ...+ ..+.+..++.|.++ + T Consensus 465 L~lI~~~~~~er~~RI~~edg~~~~v~in~~~~d~~~G~~v~~Ndi~g~~Dv~v~~~p-~~~s~r~~~~~~l~qll~~~~ 543 (725) T protein:vir:10 465 QSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGP-SFQSMKQQNRSEILELLGKTP 543 (725) T ss_pred HHHHHHHcCCCcEEEEecCCCCcceeEeccccccccccchhhhhccccceeEEEeecc-CcHHHHHHHHHHHHHHHHhcc Confidence 442 1 110 00 011111011 1111 22444455555432 1 Q ss_pred -CCcH--HHHHHhCCCCc----cHH-HH---------------------HHHHHHHHHHHH---H--hhcccccccCCCC Q lcl|Aclame:pro 410 -ESWA--SIRRNILNYNA----DQI-KQ---------------------DDLDRAREQITL---F--AGNPVQRPQEDGS 455 (456) Q Consensus 410 -~~s~--~t~~~~~~~~~----~~~-~~---------------------~e~~~~~e~~~~---~--~~~~~~~~~~~Gs 455 (456) ..+. .++...+.... +++ +. +.+..+.++..+ + +.......+.+.. T Consensus 544 ~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~~~~~e~~q~~~e~qq~~~~q~~~e~~q~~~~~~~~qae~~ 623 (725) T protein:vir:10 544 QGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELA 623 (725) T ss_pred ccchhHHHHHHHHhhcCCchhHHHHHHHHHhhhhhhccCCccccchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH Confidence 1010 11111111110 000 00 000000000000 0 0000001111111 Q ss_pred C Q lcl|Aclame:pro 456 R 456 (456) Q Consensus 456 ~ 456 (456) | T Consensus 624 k 624 (725) T protein:vir:10 624 K 624 (725) T ss_pred H Confidence 2 No 113 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=99.33 E-value=8e-12 Score=81.43 Aligned_cols=392 Identities=11% Similarity=-0.011 Sum_probs=180.5 Q ss_pred HHHHHHHHHHHHHHHH-H--HHH-------HHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMS-R--VRL-------LARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~-~--~~~-------~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) +-|+..|..+...... + +.. -..|+.+- ... ....+... .-+.+.-...+|+..++-+..-|+ T Consensus 1 MG~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~-~~~~v~~~-----~al~~~~v~~ci~~ia~~iA~lp~ 73 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNYDEDIGIDISDSNFWEKF-GIK-LNFSVRGK-----RALKENTVYVCTKIRAESIGKLSL 73 (422) T ss_pred CchhhhhhhccCCccchhhhhhhccccccCcchhhhhc-ccc-CCcccchh-----hhhccHHHHHHHHHHHHhhhhCce Confidence 3355544332211100 0 000 00111110 000 00001000 002233345677888887777788 Q ss_pred ccCCCccccHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 77 TVGGSADSDLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 77 ~~~~~~d~~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 150 (456) .+....+......+.+++.. |. ...+...+..+.+.+|.||+.+-.+..|++ .+.+++|..+.++.|+...... T Consensus 74 ~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~~~~~ 153 (422) T protein:vir:13 74 KIYKDKEEYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDNFLSS 153 (422) T ss_pred EEEecCcccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCcceec Confidence 76322221112234444432 32 235677888889999999999999988886 5889999999998875432111 Q ss_pred EEEEEE-EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHH Q lcl|Aclame:pro 151 RAAMRW-WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEP 229 (456) Q Consensus 151 ~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~ 229 (456) ..-+.| +...++ .. ..+.++.+.|+... . ....-.|.|.++. T Consensus 154 ~~~~~y~~~~~~g--~~-~~~~~~eiih~~~~-------------------------------~---~~~~~~G~s~~~~ 196 (422) T protein:vir:13 154 LSKVWYVVTDKNG--KE-HKLLPDEMLHFIGD-------------------------------I---TLDGLIGIKPLDY 196 (422) T ss_pred cceEEEEEEeCCC--eE-EEEcccceEEEcCC-------------------------------C---CCCCcccccHHHH Confidence 111111 111111 11 11223333332110 0 0001136666665 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhh-h-hhh--hhccceeecCCCcceeeccc Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYA-S-IFE--AAPGALWELPPGVDIWESQA 302 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~~ 302 (456) +...++....... ....+|.. |.-++.-... ..++.-+.+... . ... ...+.+..++.+.++.++.. T Consensus 197 ~~~~i~~~~~~~~---~~~~~f~ng~~p~gil~~~~~---l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~ 270 (422) T protein:vir:13 197 LRCTIENGRATQE---FINKFFKNGLSIKGIVQYVGD---LDEKAKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISL 270 (422) T ss_pred HHHHHHHHHHHHH---HHHHHHhccCCccEEEEeCCC---CCHHHHHHHHHHHHHHhcCccccCCceecCCCceeeeccC Confidence 5544443332222 22233332 4333322111 111111111110 0 011 12345677788888877653 Q ss_pred cc-hHHHHHHHHHHHHHHHhhcCCChhhhcccc-ccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 303 ND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQS---AEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE 377 (456) Q Consensus 303 ~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~S---g~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~ 377 (456) .. ...|++..+....+|+..-++|+..++... ++-| .....+....|.-.+...+..|...| +.-... T Consensus 271 ~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~L-------l~~~~~ 343 (422) T protein:vir:13 271 SMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNNLTEQQKDFYVTTLQSSLTVYEQEIQDKL-------FSQYET 343 (422) T ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CChhhh Confidence 32 234677778888999999999999997532 1111 11222222222222222222211111 000111 Q ss_pred CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 378 SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 378 ~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .....+++.+......|..+.++++.++++.|+++.-.+++.+|+.|-+--+ .-....--.++.. +...+.+++.|-| T Consensus 344 ~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~l~~~-~~~~~~~g~~~g~ 422 (422) T protein:vir:13 344 LQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRENLPPVEGGDRLLVNGNMIPIEMA-GEQYKKGGEKGGK 422 (422) T ss_pred cCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCccchhhc-ccccccCCCcCCC Confidence 1122344444455567888999999999999999999999999988743211 0000000001111 1222334455555 No 114 >protein:vir:9263 Length: 725 # NCBI annotation: 1 # Family: family:all:487 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720327;genbank:gi:24371585;genbank:GeneID:955785 Probab=99.31 E-value=3.7e-11 Score=77.81 Aligned_cols=444 Identities=10% Similarity=-0.054 Sum_probs=184.0 Q ss_pred CCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDG-------MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~-------~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) |.+. ...+.++...+... +....+-.+||.|++--. .....++. ..+.++|.++.+|+..+++-.- T Consensus 1 m~d~--~~~~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw~~----~~~~~l~~-q~rp~~N~i~~~i~~v~g~e~~ 73 (725) T protein:vir:92 1 MADN--ENRLESILSRFDADWTASDEARREAKNDLFFSRISQWDD----WLSQYTTL-QYRGQFDVVRPVVRKLVSEMRQ 73 (725) T ss_pred CCch--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCCH----HHHHHHHh-cCCCcccchHHHHHHHHhhHHh Confidence 6553 23455554433222 223344578999986421 11112221 2234679999999999998775 Q ss_pred CCcccC----CCccccHHHH----HHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC---C---CCceEEEEEc---cc Q lcl|Aclame:pro 74 NGITVG----GSADSDLALR----ARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR---D---DGTATITADS---PE 136 (456) Q Consensus 74 ~~~~~~----~~~d~~~~~~----l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~---~---~g~~~i~~~~---p~ 136 (456) +...+. ..+|.+..+. +..+.+.|+.+...+.++.+++++|.||+-|..+ + +++.+|...+ |. T Consensus 74 nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~i~~~~i~~~~ 153 (725) T protein:vir:92 74 NPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNVAVREQIESGVGAWRLVTDYEDQSPTSNNQVIRREPIHSAC 153 (725) T ss_pred CCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhcCcceeeeeecccCCCCCCCceeeEEeeccCCh Confidence 543321 2233333333 3445667899999999999999999999877532 2 2445555432 22 Q ss_pred eEEEEeeCCCCce-e----EEEEEEEEecC--------------------------------CceeEEEEEeCCeEE--E Q lcl|Aclame:pro 137 TMVVSVDPLQPWR-I----RAAMRWWRDLD--------------------------------AESDFAIVWSGDGWQ--K 177 (456) Q Consensus 137 ~~~~i~d~~~~~~-~----~~~i~~~~~~~--------------------------------~~~~~~~~~~~~~~~--~ 177 (456) . -++|||..... + .++++.|.+.+ .......+|....+. . T Consensus 154 ~-~V~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vrv~e~~~r~~~~~~~ 232 (725) T protein:vir:92 154 S-HVIWDSNSKLMDKSDSRHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAEFYEVVEKKETA 232 (725) T ss_pred h-hcccCchhhccChhhHHHHHHHhcCCHHHHHHHHhhcCcchhhhhhcccCCcccccccCCCeEEEEEEEEEEEEeeeE Confidence 2 14466543211 0 01111111100 001111112111100 0 Q ss_pred EEE-cc-cc-----ccc-----------ccc----------eeec-c-CCCcccccccccccCceeEEEEe----cCCC- Q lcl|Aclame:pro 178 FAR-PC-FV-----QSS-----------SRR----------RLVT-R-ISDSWVPVGDAVVTGSPPPVVVY----QNPD- 222 (456) Q Consensus 178 ~~~-~~-~~-----~~~-----------~~~----------~~~~-~-~~~~~~~~~~~~~~~~~~pv~~~----~n~~- 222 (456) +.. .. .. +.. .+. +.+. . ..|.....+..+...+.+|++++ .... T Consensus 233 ~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~~~P~vP~~g~r~~~~g 312 (725) T protein:vir:92 233 FIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVPVFGEWGFVED 312 (725) T ss_pred EeecCCCCCceeecChhhHHHHHHHHhccCchhhhhccceeeeEeeeeecchhhhcCCCCCCCCceeeEEEEeeeeccCC Confidence 000 00 00 000 000 0000 0 01111111222222333444433 1122 Q ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh-cCCCccccc--cccchhhhhhhhhhhhhccceeecCCCcc Q lcl|Aclame:pro 223 ---GMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRAL-KSTEHGLPN--VDENGNAIDYASIFEAAPGALWELPPGVD 296 (456) Q Consensus 223 ---~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i-~G~~~~~~~--~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (456) +.|-+..+++.++.+|...|.....+........++ .|...+... ...++.++..........|.+- ... T Consensus 313 ~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~ 388 (725) T protein:vir:92 313 KEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDENNGEMP----TQP 388 (725) T ss_pred cccccceeccchhHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHhccCccceeecccccccccccc----ccC Confidence 337888999999999999988776554322211110 010000000 0000000000000000111110 011 Q ss_pred eeeccc-cchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- Q lcl|Aclame:pro 297 IWESQA-NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQ-- 373 (456) Q Consensus 297 ~~~~~~-~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~-- 373 (456) +...+. .-...+...++.....|-.+||+.+..+|..+++.||+|+...-..-..........|..+.+++.++++. T Consensus 389 i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~lI 468 (725) T protein:vir:92 389 LAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRADLETYVFQDNLATAMRRDGEIYQSIV 468 (725) T ss_pred CcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 111122 22345667788888888889999999999887778999999888776666666666667776666555543 Q ss_pred --hcCCC--------ccccceEEecC-------------------------CCCCC---HHHHHHHHHHHHhc-CCC-cH Q lcl|Aclame:pro 374 --IEGES--------VEDTVDVSFES-------------------------PDRVT---LGEKYSAASLAKAA-GES-WA 413 (456) Q Consensus 374 --~~g~~--------~~~~i~v~f~~-------------------------~~~~~---~~e~ad~~~kl~~~-g~~-s~ 413 (456) +.+.. +...-.+.++. ..|.+ ..+.+..++.|.++ +-+ +. T Consensus 469 ~~~~~~~r~~RI~~edg~~~~v~in~~~~~~~~G~~~~~Ndi~g~~Dv~v~~~p~~~s~r~~~~~~l~ql~~~~~~~~~~ 548 (725) T protein:vir:92 469 NDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRAEILELLGKTPQGTPE 548 (725) T ss_pred HHhcCCCcEEEEecCCCCcceEEeccccccccccchhhhhccccceeeEEeeccChHHHHHHHHHHHHHHHHhcccchhH Confidence 22110 00000011111 01222 22334444444432 100 00 Q ss_pred --HHHHHhCCCCccHHHHHHHHHHHHHH-------------------------HH----H--hhcccccccCCCCC Q lcl|Aclame:pro 414 --SIRRNILNYNADQIKQDDLDRAREQI-------------------------TL----F--AGNPVQRPQEDGSR 456 (456) Q Consensus 414 --~t~~~~~~~~~~~~~~~e~~~~~e~~-------------------------~~----~--~~~~~~~~~~~Gs~ 456 (456) .++...+....-+..+..+++.+.+. .+ + ........+.+-+| T Consensus 549 ~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~~~~~~e~~q~~~~~qqa~~~q~~~e~~~~qa~~~~~qae~~k 624 (725) T protein:vir:92 549 YQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAK 624 (725) T ss_pred HHHHHHHHhhcccchHHHHHHHHHHhhhchhccCCccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH Confidence 01111111100000000000000000 00 0 00000001111112 No 115 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=99.26 E-value=2.6e-11 Score=78.58 Aligned_cols=399 Identities=12% Similarity=0.038 Sum_probs=193.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHhhccCcccccCcccchhhhhhhhhhcCChHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRV-------------------RLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGL 61 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~-------------------~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~ 61 (456) ...-+| --.|.+.|..+...| +-+ .+|.|.. .+ -+......+.+.-.+ T Consensus 60 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~--------F~-Gy~~la~laQ~~eyr 126 (698) T protein:vir:10 60 VAEPSP---SLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSG--------FP-GFPTLVLLAQLPEYR 126 (698) T ss_pred ccCCCc---cccccccceeccccCCccccchhhhhhcccccccccc-hhhhccC--------cc-hHHHHHHHhhccchh Confidence 111122 112222222111100 111 1122211 00 011111223344456 Q ss_pred HHHHHHHHhhhcCCcccCCC-------------------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEe Q lcl|Aclame:pro 62 MVRDSVADRIIPNGITVGGS-------------------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWR 122 (456) Q Consensus 62 ~iVd~~~~~l~g~~~~~~~~-------------------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~ 122 (456) +++.+.+..+.-+.+.+.+. .|.+..+.|...+++-++...+.++.+.+-.||.+..++-. T Consensus 127 ~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aRlfGGa~~~i~I 206 (698) T protein:vir:10 127 AMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKI 206 (698) T ss_pred hHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceEEEEEe Confidence 66666666665443322111 12244556777777777888899999999999998766655 Q ss_pred CCCCc----eE--------------EEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccc Q lcl|Aclame:pro 123 RDDGT----AT--------------ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFV 184 (456) Q Consensus 123 ~~~g~----~~--------------i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (456) +.++. |. +.+++|.++.|-.-+. ..+ .....+..++..+. +..+|.++- T Consensus 207 ~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~--~dP------~spdfgkP~~y~V~--G~~IH~SRL--- 273 (698) T protein:vir:10 207 KGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNS--INP------VADDFYKPSTWWMI--GSEVHATRL--- 273 (698) T ss_pred ecCccccccccccccccccCccceeeeeecccccccchhhh--ccc------hhhccCCCceEEEe--cceecceeE--- Confidence 33321 11 3444444444311000 000 00011111111111 011111100 Q ss_pred cccccceeeccCCCcccccccccccCcee-EE--EEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC Q lcl|Aclame:pro 185 QSSSRRRLVTRISDSWVPVGDAVVTGSPP-PV--VVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKST 261 (456) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv--~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~ 261 (456) +.+.+.| |- -+..|-.|.|..+.+.+-+++++++.-.....+..+....+.. + T Consensus 274 ----------------------~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~~~~l~~-d- 329 (698) T protein:vir:10 274 ----------------------HTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILM-D- 329 (698) T ss_pred ----------------------EEecCCCchhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH-H- Confidence 0000110 10 0112335888888999999999888766665554443332211 1 Q ss_pred Cccccccccchh-----hhhhhhhhhhhccceeecC-CCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc Q lcl|Aclame:pro 262 EHGLPNVDENGN-----AIDYASIFEAAPGALWELP-PGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA 335 (456) Q Consensus 262 ~~~~~~~d~~g~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~ 335 (456) ..... ...++ .+..........| +..++ .+.++.|++ +++..+-+.+....+++|+.++||...|-+.+. T Consensus 330 -la~aL-~~g~~~~l~~R~eli~~~Rsn~G-~~llDk~~Eefeq~s-t~lSGLddVi~qf~q~VAgaa~IPltkLfGqSP 405 (698) T protein:vir:10 330 -LAQAL-TPGANVDLSMRAELINRYRDNRN-ILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITP 405 (698) T ss_pred -HHHhc-CChhhHHHHHHHHHHHHhcCccc-eEEEecCCcceEEEe-cCcCCHHHHHHHHHHHHHhhhcCchhhhhccCC Confidence 11110 11111 1111122233333 34445 466777775 678888899999999999999999877655442 Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccccceEEecCCCCCCHHHHHHHHHH------- Q lcl|Aclame:pro 336 ---NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE-GESVEDTVDVSFESPDRVTLGEKYSAASL------- 404 (456) Q Consensus 336 ---n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~-g~~~~~~i~v~f~~~~~~~~~e~ad~~~k------- 404 (456) |.||++-..-|...+.- ..++.+.+.+++++.++..-. |.. +.++.+.|++--..+..|.|++-.| T Consensus 406 kGlNATGE~D~rnYYD~I~s--~Qe~~L~p~L~rl~~ii~rS~~G~i-dp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~ 482 (698) T protein:vir:10 406 TGLNASSEGEIRVWYDYVRA--YQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAEARYKQAQSDVL 482 (698) T ss_pred cccCccchhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC-CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHH Confidence 67999666666555543 446889999999988876543 553 3468999999988998888776433 Q ss_pred HHhcCCCcHHHHHHhC------CCCc--cHHH--------HHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 405 AKAAGESWASIRRNIL------NYNA--DQIK--------QDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 405 l~~~g~~s~~t~~~~~------~~~~--~~~~--------~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +...|+++....+..| ||.. |..+ .++.+.-.-+.....+..+......||+ T Consensus 483 ~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (698) T protein:vir:10 483 YVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGVLTYVQRMAEGGDTGAPTAPGGAR 550 (698) T ss_pred HHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHHHhhhcCCcCCCCccccccccccc Confidence 4456888776655443 3431 1111 1111110000011111111122345555 No 116 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=99.26 E-value=3.8e-11 Score=77.70 Aligned_cols=369 Identities=12% Similarity=0.022 Sum_probs=167.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHhhccC--cccc-----cCcccchhhhhhhhhhcCChHHHHHHHHHHhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMS--RVRLLARYSNGDA--PLPE-----LTRNTSAAWRSFQREARTNWGLMVRDSVADRI 71 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~--~~~~~~~YY~g~~--~i~~-----~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l 71 (456) |. --+.+.+..... .-.....+.-... .+.. .+..+.. ..-+.+.=...+|+.+++-+ T Consensus 1 m~--------m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-----~~al~~~~v~~~v~~ia~~i 67 (392) T protein:vir:74 1 MI--------LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSA-----RAALRNSDLFSIILQLSSDL 67 (392) T ss_pred Cc--------chhhhhhhcccCcccccccccccccCchhhhhhhccCCCCcccch-----hhhhcchHHHHHHHHHHHhh Confidence 11 111111110000 0000000000000 0000 0001110 00011223456788888877 Q ss_pred hcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 72 IPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 72 ~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 150 (456) .+-|+.+...... ..+.+-.....-..+...+..+++.+|.||+++-.+.+|++ .+.+++|..+.+..++.... + T Consensus 68 a~lp~~~~~~~~~---~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~-~ 143 (392) T protein:vir:74 68 AIVKINAEKKKNQ---GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENG-M 143 (392) T ss_pred ccCceeeccchhh---hhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCce-E Confidence 7778876432221 11111111112245566778899999999999999999986 58889999988887654321 1 Q ss_pred EEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC-CCCCchHHH Q lcl|Aclame:pro 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN-PDGMGEVEP 229 (456) Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n-~~~~s~~~~ 229 (456) . .+ +...++.......+.++.+.|+.... ... ..|.|.++. T Consensus 144 ~--y~-~~~~~~~~~~~~~~~~~evih~~~~~-----------------------------------~~~~~~G~s~i~~ 185 (392) T protein:vir:74 144 Y--YN-ITFDDPKIEPILQAPQSDLIHMKLLS-----------------------------------IDGGKTGISPLYS 185 (392) T ss_pred E--EE-EEecCCccceeEEEcCccEEEecCCC-----------------------------------CCCccccccHHHH Confidence 1 11 11111122222334444444432100 001 136666655 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeecccc-ch Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQAN-DF 305 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 305 (456) +...++....+.. ....+|.+ |.-+++ ...+....++.-......-.-....+++..++.+.++..+... .. T Consensus 186 ~~~~i~~~~~~~~---~~~~~f~ng~~p~~il~-~~~~~~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d 261 (392) T protein:vir:74 186 LRRESKIQRASDR---LTISSLNSSLNVPGVLT-VKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNV 261 (392) T ss_pred HHHHHHHHHHHHH---HHHHHHhccCCCceEEE-eCCCCCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhH Confidence 5444433332222 22233333 222222 1111111111111111110111233456677888888777532 23 Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhccccccch-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 306 TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQS-AEGAHNIE-KGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTV 383 (456) Q Consensus 306 ~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~S-g~Al~~~~-~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i 383 (456) ..|++..+....+|+..-++|++.+|....+.| .++.+..+ ..|.--+ +.+...+.+.+ . ..+ T Consensus 262 ~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~e~~~~~~~~~l~p~~----~~ie~~l~~~l-------~----~~~ 326 (392) T protein:vir:74 262 AQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYL----RPAISELEYKL-------S----DHI 326 (392) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHH----HHHHHHHHHhc-------c----chh Confidence 457888888999999999999999976443333 33332211 1111111 11222222111 1 112 Q ss_pred eEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhC---CCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 384 DVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 384 ~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +.......-.+..+.++.+.+++.+|++++..+++++ |+.++++.+ .+ +..+.++.|+.+ T Consensus 327 ~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~pne~r~------~e-------nl~~~~~Gd~~~ 389 (392) T protein:vir:74 327 SVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPA------PE-------NTNKKTTGQSNE 389 (392) T ss_pred cccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCCccccch------hc-------CCCCCCCCCCCC Confidence 2222223335667788889999999999998887665 777754432 11 122223333333 No 117 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=99.25 E-value=1.5e-10 Score=74.46 Aligned_cols=403 Identities=10% Similarity=0.022 Sum_probs=166.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccC-cccchhhhhhhhh-hcCChHHHHHHHHHHhhhc----- Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELT-RNTSAAWRSFQRE-ARTNWGLMVRDSVADRIIP----- 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~-~~~~~~~~~~~~k-~~~n~~~~iVd~~~~~l~g----- 73 (456) |.+.....+-+....+-.+.....---..+..|-. ..+ ...+..+.+..+. ..+.+.+.+|++.++.+.+ T Consensus 31 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~l~~l~~~~~~npiv~~~I~~~a~~ia~~~~~~ 107 (547) T protein:vir:63 31 IQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFK---TKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPA 107 (547) T ss_pred hhhhhHHHHHHhhcccchhhhchhhheeecccccc---cCCccCChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhh Confidence 22222221111111110000000000011111100 000 0111222222222 2234667777777665432 Q ss_pred ------CCc--ccCC------CccccHHHHHHHHHHhc---------ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceE- Q lcl|Aclame:pro 74 ------NGI--TVGG------SADSDLALRARRIWRDN---------RMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT- 129 (456) Q Consensus 74 ------~~~--~~~~------~~d~~~~~~l~~~~~~n---------~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~- 129 (456) -++ ++.. ..+......+.+++.+- .+..+...+..+.+.+|.+|+.+-.+.+|++. T Consensus 108 ~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~~ 187 (547) T protein:vir:63 108 RHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVR 187 (547) T ss_pred hhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHhhCCEEEEEEECCCCcEEE Confidence 112 2211 11111222344444331 13456677888899999999999899999874 Q ss_pred EEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccccccccccc Q lcl|Aclame:pro 130 ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVT 209 (456) Q Consensus 130 i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (456) +..++|..+.++.++.- ......++|+...++.. ...|.++.+.|+.... .... T Consensus 188 L~~l~p~~V~~~~~~~g-~~~~~~~~y~~~~~~~~--~~~~~~~eiih~r~n~----------------------~~~~- 241 (547) T protein:vir:63 188 FVAKDPTTIFFATTADG-KIPDNGNRFVQVIDQKI--VATFNAREMAFAVRNP----------------------RSDI- 241 (547) T ss_pred EEEecCceeEEEECCcc-ccccCceEEEEEcCCcE--EEEeccccEEEecccC----------------------CCCc- Confidence 88899998888765432 11111122222222111 1123333333332100 0000 Q ss_pred CceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhh-- Q lcl|Aclame:pro 210 GSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFE-- 282 (456) Q Consensus 210 ~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~-- 282 (456) .....|.|.++.....+.....+ ......+|.+ |.-++ .|.. ...++.-+.+. ..|. T Consensus 242 --------~~~~~G~Spi~~~~~~i~~~~~a---~~~~~~~f~Ng~~p~giL~~~~~~---~ls~e~~~~lk--~~~~~~ 305 (547) T protein:vir:63 242 --------YATGYGYPELEIALKQFIAHENT---EAFNDRFFSHGGTTRGILQIKAAQ---QQSQHALEIFK--REWKNS 305 (547) T ss_pred --------ccccccccHHHHHHHHHHHHHHH---HHHHHHHHHcCCCcceEEEecCCC---CCCHHHHHHHH--HHHHHH Confidence 00113666665544444433322 2223344443 22222 2211 01111111211 1121 Q ss_pred ----hhccceee-cCCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhcccccc---------chHHHHHHHHH Q lcl|Aclame:pro 283 ----AAPGALWE-LPPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN---------QSAEGAHNIEK 347 (456) Q Consensus 283 ----~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n---------~Sg~Al~~~~~ 347 (456) ...+++.. .+.+.++..+.... ...|++..+..+.+|+.+-++|++.+|....+ .+...+..... T Consensus 306 ~~G~~nagk~~vl~~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~ 385 (547) T protein:vir:63 306 LSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQ 385 (547) T ss_pred hcCcccccccccccCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHH Confidence 12233323 34566776655322 22488888999999999999999999742211 11112222222 Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCcc- Q lcl|Aclame:pro 348 GFLFKC-EDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNAD- 425 (456) Q Consensus 348 ~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~- 425 (456) .+...| .-+.+.+...|.+.+ ... ....+.+.|......+..+.+.. .++..+|+++.-.+++.+|+.+. T Consensus 386 ~~~~~tL~P~~~~ie~~ln~~L------~~~-~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~g~lT~NE~R~~~gl~P~~ 457 (547) T protein:vir:63 386 ASKNKGLQPLLGFIEDFINKHI------VAE-FGDKYTFQFVGGDIKSELESVKI-LAEKAKVAMTVNEVRKELNLPGDV 457 (547) T ss_pred HHHHHHHHHHHHHHHHHHHhhc------ccc-cCCceEEEeeccccccHHHHHHH-HHHHhCCCcCHHHHHHHhCCCCCC Confidence 221111 111222222222211 111 12346777887777777777664 45677899999999999988652 Q ss_pred HHH-------------------HHHHHHHHHHHHHHhhccc----ccc-------------cCCCCC Q lcl|Aclame:pro 426 QIK-------------------QDDLDRAREQITLFAGNPV----QRP-------------QEDGSR 456 (456) Q Consensus 426 ~~~-------------------~~e~~~~~e~~~~~~~~~~----~~~-------------~~~Gs~ 456 (456) +-- ..+.++.++.........+ +.+ .+||+. T Consensus 458 egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 524 (547) T protein:vir:63 458 IGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQR 524 (547) T ss_pred CCCceeecccccccccccccccCCccccchhhccccccccCCCCCCCCCCCCCCcccCCCcCccccc Confidence 100 0011111111111111110 101 111111 No 118 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=99.25 E-value=4.2e-11 Score=77.45 Aligned_cols=376 Identities=11% Similarity=0.022 Sum_probs=163.3 Q ss_pred hhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCC---cc----ccHHHHHHHHHHh---c-----------ChhHHHHHH Q lcl|Aclame:pro 48 WRSFQREARTNWGLMVRDSVADRIIPNGITVGGS---AD----SDLALRARRIWRD---N-----------RMDSVCKQW 106 (456) Q Consensus 48 ~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~---~d----~~~~~~l~~~~~~---n-----------~~~~~~~~~ 106 (456) ++.+.. .+.+...+|+..++.+.+-|+.+... .+ ......+...+.. | -+..+...+ T Consensus 1 l~~l~~--~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~ 78 (467) T protein:vir:31 1 MAELLE--HNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTA 78 (467) T ss_pred Chhhhh--cCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHH Confidence 333321 14588999999999999999865211 11 1122223333321 2 123455678 Q ss_pred HHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEccccc Q lcl|Aclame:pro 107 VKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQ 185 (456) Q Consensus 107 ~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (456) ..+...+|.||+.+-.+..|++ .+..++|..+.+..|... ++....+...+...|.............. T Consensus 79 ~~~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (467) T protein:vir:31 79 WTDYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERG---------FVQLLEEKEKYFGVAGDRYQTNGNGDLDP- 148 (467) T ss_pred HHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecce---------eEeecCCceeeEEeccccceeecccceee- Confidence 8889999999999988988887 488889998888765431 11111122222222211111110000000 Q ss_pred ccccceeeccCCCcccccccccccCceeEEEEecCC------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHH Q lcl|Aclame:pro 186 SSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP------DGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQR 256 (456) Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~------~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~ 256 (456) ..........+ ....+..--|+|+... .|.|.+...+..++.... -......+|.+ |.- T Consensus 149 ---~~~~~~~~~~~------~~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~---~~~~~~~~f~ng~~p~g 216 (467) T protein:vir:31 149 ---VFVDADDGSTG------TSVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSA---AQDYNIDFFENDGVPRI 216 (467) T ss_pred ---eeeeecccccc------ceeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHH---HHHHHHHHHhccCCCce Confidence 00000000000 0000000012333221 356655544433332222 11222233332 222 Q ss_pred hh--cCCCccccccccchhhhhh-hhhhh--------------hhccceeecCCCcce-------eecccc--chHHHHH Q lcl|Aclame:pro 257 AL--KSTEHGLPNVDENGNAIDY-ASIFE--------------AAPGALWELPPGVDI-------WESQAN--DFTPMLS 310 (456) Q Consensus 257 ~i--~G~~~~~~~~d~~g~~~~~-~~~~~--------------~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~ 310 (456) ++ +|.... ++....+.. ..... ...+.....+.+.+. ..+... ....|++ T Consensus 217 il~~~~~~l~----~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e 292 (467) T protein:vir:31 217 AIIVKGAELT----EKGREEMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLE 292 (467) T ss_pred EEEecCcCCC----HHHHHHHHHHHHhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHH Confidence 22 222111 111111100 00000 011122222323222 111111 1234788 Q ss_pred HHHHHHHHHHhhcCCChhhhcccc-ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEe Q lcl|Aclame:pro 311 AIKEHIRQLSSATKTPLPMLMPDS-ANQ--SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSF 387 (456) Q Consensus 311 ~~~~~~~~i~~~t~~p~~~~~~~~-~n~--Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f 387 (456) ..+....+|++.-++|+..+|... ++. +.+.....+. ..-+.-+.+.+...+.+.+ +.-.-....+.+++.+ T Consensus 293 ~~~~~~~~Ia~~fgVpp~~lG~~~~~~~~s~~e~~~~~f~--~~~l~P~~~~ie~~ln~~l---~~~~~~~~~~~i~f~~ 367 (467) T protein:vir:31 293 FRGRNEHDILKVHDVPPVIAGVVESGAFSTDAEEQRKEFA--EETIQPKQHDFGELLYELV---HKQGLDAPDWTIEFEL 367 (467) T ss_pred HHHHHHHHHHHHhCCCHHHcccCCCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHHHHhh---cchhhccCCceEEEec Confidence 888888999999999999886422 221 2222221111 1111112222222222211 1000112234466667 Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHH------HHH---------------------HHHHHH Q lcl|Aclame:pro 388 ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDD------LDR---------------------AREQIT 440 (456) Q Consensus 388 ~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e------~~~---------------------~~e~~~ 440 (456) ......+..+.++++.++++.|+++...+++.+|+.|-..+.+. ... ..+..+ T Consensus 368 ~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~Gl~pi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (467) T protein:vir:31 368 AKPDTKLQDVEIASQRVQAMQGLLTVNELRDEFGFEPFPEEHVYGGETLVAEVTGGSGPGGGIGDQIEQLVEDRADEIID 447 (467) T ss_pred chhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCcccccCCcccccccccccCCCCcccCcCCCCCCCcccchHh Confidence 77888999999999999999999999999999998653111110 000 000000 Q ss_pred HH-hhcccccccCCCCC Q lcl|Aclame:pro 441 LF-AGNPVQRPQEDGSR 456 (456) Q Consensus 441 ~~-~~~~~~~~~~~Gs~ 456 (456) .+ ++...+.+-+.|++ T Consensus 448 ~~~~~~~~~~~~~~~~~ 464 (467) T protein:vir:31 448 SYQADLETEQLIEIGAN 464 (467) T ss_pred hhhhccccchhhhhccc Confidence 00 00011111122222 No 119 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=99.23 E-value=7.2e-11 Score=76.19 Aligned_cols=401 Identities=12% Similarity=0.051 Sum_probs=192.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) -+.-||.+.--. .-.+.-..--++-+ .+|.|..= .+ +......+.+.-.++++.+.+..+.-+.+...+ T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~l-~~~~~~~F---~G------y~~la~laQ~~eyr~~~~~ia~e~~R~w~~~~~ 145 (695) T protein:vir:36 77 VSNYTPRERRAA-SYALDFNGTSMDAL-SFVTSSGF---PG------FPTLVLLAQLPEYRAMHEVLADECIRTWGEAIG 145 (695) T ss_pred ccccCccccchh-hhhhcccccccccc-hhhhccCc---ch------HHHHHHHhhccchhhHHHHHHHHhhcccceecc Confidence 233333321000 00000000001111 12222110 00 111111233444456666666666544322211 Q ss_pred -------------------CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc----eE-------- Q lcl|Aclame:pro 81 -------------------SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT----AT-------- 129 (456) Q Consensus 81 -------------------~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~----~~-------- 129 (456) ..+.+..+.|...+++-++...+.++.+.+-.||.+..++-.+.++. |. T Consensus 146 ~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~ 225 (695) T protein:vir:36 146 GTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVP 225 (695) T ss_pred cchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCcccccccccccccccc Confidence 11224456677777777788899999999999999987765544331 11 Q ss_pred ------EEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccccc Q lcl|Aclame:pro 130 ------ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPV 203 (456) Q Consensus 130 ------i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (456) +.+++|.++.|-.-+. ..+ .....+..++..+. +..+|.++- . T Consensus 226 kGslKGl~ViDp~~vtP~~~n~--~dP------~spdfgkP~~y~V~--G~kIH~SRL----------~----------- 274 (695) T protein:vir:36 226 KGSFQGLRVVEPYWVTPNNYNS--INP------VADDFYKPSTWWMI--GTEVHATRL----------H----------- 274 (695) T ss_pred CcceeeeEeecccccccchhhh--ccc------hhhccCCCceEEEe--ceEEeeeeE----------E----------- Confidence 4444555544421000 000 00011112222211 111111110 0 Q ss_pred ccccccCcee-EE--EEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccch-h---hhh Q lcl|Aclame:pro 204 GDAVVTGSPP-PV--VVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENG-N---AID 276 (456) Q Consensus 204 ~~~~~~~~~~-pv--~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g-~---~~~ 276 (456) .+.++| |- -+..|-.|.|..+.+.+-+++++++.-.....+..+....+.+ +......+... + .+. T Consensus 275 ----~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~---dla~aL~~g~~~~l~~R~e 347 (695) T protein:vir:36 275 ----TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILM---DLAQALMPGANVDLSMRAE 347 (695) T ss_pred ----EecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHH---HHHHhhcChhHHHHHHHHH Confidence 001110 00 0112335888888888889998887766655554433332111 11111011111 1 111 Q ss_pred hhhhhhhhccceeecC-CCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc---cchHHHHHHHHHHHHHH Q lcl|Aclame:pro 277 YASIFEAAPGALWELP-PGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA---NQSAEGAHNIEKGFLFK 352 (456) Q Consensus 277 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~---n~Sg~Al~~~~~~l~~k 352 (456) .........| +..++ .+.++.|++ ++++++-+.+....+++|+.++||...|-+.+. |.||++-..-|...+.- T Consensus 348 li~~~Rsn~G-~~llDk~~Eefeq~s-tslSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s 425 (695) T protein:vir:36 348 LINRYRDNRN-ILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRA 425 (695) T ss_pred HHHHhcCccc-eEEEecCCcceEEEe-cccCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHH Confidence 1122233333 34445 466777775 678888899999999999999999877655432 77999766666655543 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCCccccceEEecCCCCCCHHHHHHHH-------HHHHhcCCCcHHHHHHhC---- Q lcl|Aclame:pro 353 CEDRLSIAKIGLEAILVKALQIE-GESVEDTVDVSFESPDRVTLGEKYSAA-------SLAKAAGESWASIRRNIL---- 420 (456) Q Consensus 353 ~~~~~~~f~~~l~~~~~l~~~~~-g~~~~~~i~v~f~~~~~~~~~e~ad~~-------~kl~~~g~~s~~t~~~~~---- 420 (456) ..++.+.+.+++++.++.... |.. +.++.+.|++--..+..|.|++- +.+..+|+++...++..+ T Consensus 426 --~Qe~~L~p~L~rl~~ii~rS~~G~i-dpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~ 502 (695) T protein:vir:36 426 --YQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEP 502 (695) T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCC-CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCC Confidence 446889999999988876543 553 44789999999888888877653 334566888776665553 Q ss_pred --CCCc--cHH------HHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 421 --NYNA--DQI------KQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 421 --~~~~--~~~------~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +|.. |.. ++-+.+-.......+ ....+....+|++ T Consensus 503 ~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 547 (695) T protein:vir:36 503 DGPYAGKLDANDDPGVPADDDIDGVLTYVQRL-AEGGDTGAPGGAR 547 (695) T ss_pred CcccccccccccCCCcCccchhhhhHhhhcCc-ccccccCCCCccc Confidence 3421 100 011111111111000 0111122233333 No 120 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=99.22 E-value=1e-10 Score=75.31 Aligned_cols=408 Identities=12% Similarity=0.056 Sum_probs=193.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCccc-----cc-CcccchhhhhhhhhhcCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRV----RLLARYSNGDAPLP-----EL-TRNTSAAWRSFQREARTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~----~~~~~YY~g~~~i~-----~~-~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~ 70 (456) -..-+|. ..|...+.....-| +.-..|--+.+.+. +. ....+ -+......+.+.-.++++.+.+.. T Consensus 59 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~-Gy~~la~laQ~~eyr~~~~~ia~e 134 (694) T protein:vir:10 59 VAEPSPS---LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFP-GFPTLVLLAQLPEYRAMHEVLADE 134 (694) T ss_pred cCCCCcc---hhhhhhccccccCCCccccchhhhhhccCcccccchhhhhccCcc-hHHHHHHHhhccchhhHHHHHHHH Confidence 1111221 12222222211111 00011111111100 00 00000 011111223344456667777766 Q ss_pred hhcCCcccCCC-------------------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc---- Q lcl|Aclame:pro 71 IIPNGITVGGS-------------------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT---- 127 (456) Q Consensus 71 l~g~~~~~~~~-------------------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~---- 127 (456) +.-+.+...+. .|.+..+.|...+++-++...+.++.+.+-.||.+..++-.+.++. T Consensus 135 ~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~l~~ 214 (694) T protein:vir:10 135 CIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDT 214 (694) T ss_pred hhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeecCcccccc Confidence 65443322111 1224455677777777788899999999999999987665543331 Q ss_pred eE--------------EEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceee Q lcl|Aclame:pro 128 AT--------------ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLV 193 (456) Q Consensus 128 ~~--------------i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (456) |. +.+++|.++.|-.-+. ..+ .....+..++..+. +..+|.++- . T Consensus 215 PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~--~dP------~spdfgkP~~y~V~--G~~IH~SRL----------~- 273 (694) T protein:vir:10 215 PLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNS--INP------VADDFYKPSTWWMI--GTEVHATRL----------H- 273 (694) T ss_pred ccccccccccCcceeeeEeecccccccchhhh--ccc------hhhccCCCceEEEe--ceEEeeeeE----------E- Confidence 11 4444555554421000 000 00011112222211 111111110 0 Q ss_pred ccCCCcccccccccccCcee-EE--EEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccccc Q lcl|Aclame:pro 194 TRISDSWVPVGDAVVTGSPP-PV--VVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDE 270 (456) Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~-pv--~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~ 270 (456) .+.++| |- -+..|-.|.|..+.+.+-+++++++.-.....+..+...-+.. +......+. T Consensus 274 --------------~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~---dla~~L~~g 336 (694) T protein:vir:10 274 --------------TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILM---DLAQALMPG 336 (694) T ss_pred --------------EecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHH---HHHHhhcCh Confidence 001110 00 0112335888888888889998887766655554333322111 111000111 Q ss_pred ch-h---hhhhhhhhhhhccceeecC-CCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc---cchHHHH Q lcl|Aclame:pro 271 NG-N---AIDYASIFEAAPGALWELP-PGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA---NQSAEGA 342 (456) Q Consensus 271 ~g-~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~---n~Sg~Al 342 (456) .. + .+..........| +..++ .+.++.|++ ++++++-+.+....+++|+.++||...|-+.+. |.||++- T Consensus 337 ~~~~l~~R~eli~~~Rsn~G-~~llDk~~Eefeq~s-tslSGLddVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D 414 (694) T protein:vir:10 337 ANVDLSMRAELINRYRDNRN-ILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGE 414 (694) T ss_pred hHHHHHHHHHHHHHhcCccc-eEEEecCCcceEEEe-cccCCHHHHHHHHHHHHHhhhcCchhhhhccCcccccccchhh Confidence 11 1 1111122233333 34445 466777775 678888899999999999999999877655432 7899976 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccccceEEecCCCCCCHHHHHHHH-------HHHHhcCCCcHH Q lcl|Aclame:pro 343 HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE-GESVEDTVDVSFESPDRVTLGEKYSAA-------SLAKAAGESWAS 414 (456) Q Consensus 343 ~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~-g~~~~~~i~v~f~~~~~~~~~e~ad~~-------~kl~~~g~~s~~ 414 (456) ..-|...+.- ..++.+.+.+++++.++.... |.. +.++.+.|++--..+.+|.|++- +.+..+|+++.. T Consensus 415 ~rnYYD~I~s--~Qe~~L~p~L~rl~~ii~rS~~G~i-dp~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~ 491 (694) T protein:vir:10 415 IRVWYDYVRA--YQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPD 491 (694) T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC-CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHH Confidence 6666665543 446889999999988876543 553 44789999999888888877653 334566888776 Q ss_pred HHHHhC------CCCc--cHH------HHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 415 IRRNIL------NYNA--DQI------KQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 415 t~~~~~------~~~~--~~~------~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .++..+ +|.. |.. ++-+.+-.......+ ....+....+|++ T Consensus 492 evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 546 (694) T protein:vir:10 492 QVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRL-AEGGDTGAPGGAR 546 (694) T ss_pred HHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCc-ccccccCCCCccc Confidence 665553 3421 100 011111111111000 0111122233333 No 121 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=99.21 E-value=6.1e-11 Score=76.59 Aligned_cols=386 Identities=10% Similarity=0.073 Sum_probs=172.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchh-hhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAA-WRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~-~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) .|.-|..+..-. +...|.+... ........-. .... -..+.....+|+.++.-+-.-|+.+- T Consensus 9 ~~~p~~~e~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~~--a~~~~~V~acV~~IA~~iA~lpl~l~ 71 (518) T protein:vir:10 9 LSAPAMAELSPQ--------------MQDSYYYAPA-VGMQLERQFSLYGGI--YKNQPWVRTVIAKRAQALARLPVKCM 71 (518) T ss_pred ecCchhhhhhhh--------------hhcccccccc-cceecccccchhhHH--HhhhHHHHHHHHHHHHhhccCceEEE Confidence 222222222111 1122222110 0000000000 0000 01233556778887777766666541 Q ss_pred ---CCcccc-HHHHHHHHHHh-cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 80 ---GSADSD-LALRARRIWRD-NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 80 ---~~~d~~-~~~~l~~~~~~-n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 150 (456) .+...+ ....+..++.+ |. -..+...+....+.+|.||+++-.+.+|++ .+.+++|..+.+..+..... + T Consensus 72 ~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~-~ 150 (518) T protein:vir:10 72 FTSGDTETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGR-Y 150 (518) T ss_pred EEcCCCceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCE-E Confidence 111111 11223344432 32 234566778888999999999999999987 48999999999888754422 1 Q ss_pred EEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC-CCCCchHHH Q lcl|Aclame:pro 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN-PDGMGEVEP 229 (456) Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n-~~~~s~~~~ 229 (456) . .++....+.......|.++.+.|+... + ..+ ..|.|.++. T Consensus 151 ~---y~~~~~~~~~~~~~~~~~~eViHir~~--------------------------s---------~dg~~~G~spi~~ 192 (518) T protein:vir:10 151 E---YYFQAGAGVGTQLVSFADDEVVPIRFF--------------------------N---------PDGLERGLSLMES 192 (518) T ss_pred E---EEEEecCCccceEEEecCCcEEEecCC--------------------------C---------CCcccccccHHHH Confidence 1 112222222222223444444443210 0 001 125665544 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh------hhccceeecCCCcceeec Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE------AAPGALWELPPGVDIWES 300 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 300 (456) ....+.....+.. ....+|.+ |..++..... ..++.-+.+. ..|. ...+++..++.+.++..+ T Consensus 193 a~~~i~~~~a~~~---~~~~~f~ng~~p~gil~~~~~---ls~e~~~~~k--~~~~~~~~G~~nag~v~vL~~G~~~~~l 264 (518) T protein:vir:10 193 LKSTIFSEDSSRN---ATAAMWKNAGRPNLVLRHEKR---LSEAAQQRLR--EQFDRAHSGSSNTGKTMVVEEGMEPIPL 264 (518) T ss_pred HHHHHHHHHHHHH---HHHHHHhcCCCccEEEecCCC---CCHHHHHHHH--HHHHHHhcCccccCcceEcCCCceEEEc Confidence 3333333222221 22233333 3333322111 1112212221 1121 123456778888888766 Q ss_pred cccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 301 QANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGES 378 (456) Q Consensus 301 ~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~ 378 (456) ..... ..|++..+....+|+..-++|++.++... +.+...+......+...| .-+...+...+.+.+ +...+ T Consensus 265 ~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~-~~t~sn~eq~~~~f~~~tL~P~l~~ie~~ln~~L---~~~~~-- 338 (518) T protein:vir:10 265 QLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILD-RATFSNISAQMRAFYRDTMAIPIARIQSAMDKYV---GQYWV-- 338 (518) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccc-- Confidence 53322 23788888888999999999999996322 222222222222222211 111122222222111 11111 Q ss_pred ccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccH--H-HHH---------HHHHHHHHHHHHh--- Q lcl|Aclame:pro 379 VEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ--I-KQD---------DLDRAREQITLFA--- 443 (456) Q Consensus 379 ~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~--~-~~~---------e~~~~~e~~~~~~--- 443 (456) ....+++........|..+.++++.+++++|+++...+++.+|+.+-+ . ++. .........+..+ T Consensus 339 ~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~ 418 (518) T protein:vir:10 339 RKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAP 418 (518) T ss_pred CCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccceecccccccccCCCCCCCC Confidence 122344444455678889999999999999999999999999986532 1 110 0000000000000 Q ss_pred hccccccc----CCCCC Q lcl|Aclame:pro 444 GNPVQRPQ----EDGSR 456 (456) Q Consensus 444 ~~~~~~~~----~~Gs~ 456 (456) ..+++.|. ++.++ T Consensus 419 ~~~~~~~~~~~~~~~~~ 435 (518) T protein:vir:10 419 KRPASTPVASLDQSPPT 435 (518) T ss_pred CCCCccccccccccccc Confidence 00011110 00000 No 122 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=99.21 E-value=6.3e-11 Score=76.51 Aligned_cols=396 Identities=10% Similarity=0.012 Sum_probs=171.7 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhcc-Cccc------ccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRL-LARYSNGD-APLP------ELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~-~~~YY~g~-~~i~------~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) +-|+..|..+.... .... -.+.|... ..+. ..+..+.+. .-+.+.=...+|+.++.-+.+-|+.+ T Consensus 1 Mg~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-----~al~~~~v~~~i~~ia~~iA~lp~~~ 73 (457) T protein:vir:62 1 MGFWSALFGRGHSP--ALDAAEGRAWEPYDPSIYNLGATASSGERVTPH-----DALQVSAVFASVRLLSETIATLPLST 73 (457) T ss_pred Cchhhhhhcccccc--ccccccccccccchhhhhhccccccCCceechH-----HhhccHHHHHHHHHHHHhHhhCceEE Confidence 33444333211110 0000 00000000 0000 001111110 00111123445677777666667765 Q ss_pred CCCcc---ccH-HHHHHHHHHh-c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCce Q lcl|Aclame:pro 79 GGSAD---SDL-ALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWR 149 (456) Q Consensus 79 ~~~~d---~~~-~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~ 149 (456) -...+ ... ...+..++.. | ....+...++...+.+|.||+.+-.+ +|.+ .+..++|..+.+..+...... T Consensus 74 ~~~~~~~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~ 152 (457) T protein:vir:62 74 YSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLR 152 (457) T ss_pred EEecCCccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEeccCCcc Confidence 32111 111 1123333322 2 23456677888899999999988555 4554 578888998877665433221 Q ss_pred eEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHH Q lcl|Aclame:pro 150 IRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEP 229 (456) Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~ 229 (456) ......|....++.......|.++.+.|+.... ..+ .-.|.|.++. T Consensus 153 ~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~--------------------------~~~--------~~~G~sp~~~ 198 (457) T protein:vir:62 153 RKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM--------------------------LPG--------DFVGCSPISY 198 (457) T ss_pred ceeEEEEEEccCCceeEEEeeCccceEEecCCC--------------------------CCC--------ceecccHHHH Confidence 111111212222223333345555555543100 000 0125665554 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh------hhccceeecCCCcceeec Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE------AAPGALWELPPGVDIWES 300 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 300 (456) ....++....+.. ....+|.+ |..++.-.. ...++.-..+. ..+. ...+++..++.+.++.++ T Consensus 199 ~~~~i~~~~~~~~---~~~~~f~ng~~p~gil~~~~---~ls~e~~~~~~--~~~~~~~~G~~nag~~~vl~~g~~~~~l 270 (457) T protein:vir:62 199 ARESIGLALAAQK---YGAHFFRNGAMPGAVVEVPG---TMSEEGLARAR--EAWRAANSGVDNAHRVALLTEGAKFSKV 270 (457) T ss_pred HHHHHHHHHHHHH---HHHHHHhccCCcceEEEcCC---CCCHHHHHHHH--HHHHHHhcCccccCcceecCCCceEEEc Confidence 4443333332222 22233333 333332211 11122222221 1111 123556778888888776 Q ss_pred cccch-HHHHHHHHHHHHHHHhhcCCChhhhccccc-cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 301 QANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGE 377 (456) Q Consensus 301 ~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~ 377 (456) ..... ..|++..+....+|+..-++|+..++.... +.++..++.....+...| .-+...+...|.+.+ + .... T Consensus 271 ~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~~L---~-~~~~ 346 (457) T protein:vir:62 271 AMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLL---F-AETA 346 (457) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c-Cccc Confidence 54332 247788888889999999999999864332 222333332222222221 111122222222111 0 0111 Q ss_pred CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH---HHH---------HHHHH----H--HHH Q lcl|Aclame:pro 378 SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQD---------DLDRA----R--EQI 439 (456) Q Consensus 378 ~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~---~~~---------e~~~~----~--e~~ 439 (456) .....+++.+......|..+.++++.+++++|+++...+++.+|+.|-+- ++. ..+.. . ... T Consensus 347 ~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~ 426 (457) T protein:vir:62 347 DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAI 426 (457) T ss_pred cCceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceeeeccccccccccccccccCCCccC Confidence 11223444445556678899999999999999999999999999865321 110 00000 0 000 Q ss_pred HHHhhcccccccCCCCC Q lcl|Aclame:pro 440 TLFAGNPVQRPQEDGSR 456 (456) Q Consensus 440 ~~~~~~~~~~~~~~Gs~ 456 (456) ..-.+.+.+.++.+|+- T Consensus 427 ~~~~~~~~~~~~~~~~~ 443 (457) T protein:vir:62 427 DPPAEEPADDEEPDNAE 443 (457) T ss_pred CCCccCCCCCCCCCCCC Confidence 00001111111111111 No 123 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=99.20 E-value=1.2e-10 Score=74.89 Aligned_cols=399 Identities=12% Similarity=0.063 Sum_probs=192.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSR-------------------VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGL 61 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~-------------------~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~ 61 (456) ...-+| --.|.+.|..+... ++-+ .+|.|.. .+ -+......+.+.-.+ T Consensus 60 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~--------F~-Gy~~la~laQ~~eyr 126 (695) T protein:vir:78 60 VAEPSP---SLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDAL-SFVTSSG--------FP-GFPTLVLLAQLPEYR 126 (695) T ss_pred ccCCCc---ccccceeceeccccCCccccchhhhhhcccccccccc-hhhhccC--------cc-hHHHHHHHhhccchh Confidence 111122 11222222211110 0111 1222211 00 011111223344455 Q ss_pred HHHHHHHHhhhcCCcccCCC-------------------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEe Q lcl|Aclame:pro 62 MVRDSVADRIIPNGITVGGS-------------------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWR 122 (456) Q Consensus 62 ~iVd~~~~~l~g~~~~~~~~-------------------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~ 122 (456) +++.+.+..+.-+.+...+. .|.+..+.|...+++-++...+.++.+.+-.||.+..++-. T Consensus 127 ~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i 206 (695) T protein:vir:78 127 AMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKI 206 (695) T ss_pred hHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEe Confidence 66666666665443222111 12244556777777777888999999999999999877655 Q ss_pred CCCCc----eE--------------EEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccc Q lcl|Aclame:pro 123 RDDGT----AT--------------ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFV 184 (456) Q Consensus 123 ~~~g~----~~--------------i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (456) +.++. |. +.+++|.++.|-.-+. ..+ .....+..++..+. +..+|.++- T Consensus 207 ~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~--~dP------~spdfgkP~~y~V~--G~kIH~SRL--- 273 (695) T protein:vir:78 207 KGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNS--INP------VADDFYKPSTWWMI--GTEVHATRL--- 273 (695) T ss_pred ccCccccccccccccccccCcceeeeEeecccccccchhhh--ccc------hhhccCCCceEEEe--ceEEeeeeE--- Confidence 44331 11 4444555554421000 000 00011112222211 111111110 Q ss_pred cccccceeeccCCCcccccccccccCcee-EE--EEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC Q lcl|Aclame:pro 185 QSSSRRRLVTRISDSWVPVGDAVVTGSPP-PV--VVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKST 261 (456) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pv--~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~ 261 (456) . .+.++| |- -+..|-.|.|..+.+.+-+++++++.-.....+..+...- ++ . T Consensus 274 -------~---------------~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~--lk-~ 328 (695) T protein:vir:78 274 -------H---------------TIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSG--IL-M 328 (695) T ss_pred -------E---------------EecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHH--HH-H Confidence 0 000110 00 0112335888888888889998887766655554333322 11 0 Q ss_pred Cccccccccch-h---hhhhhhhhhhhccceeecC-CCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc- Q lcl|Aclame:pro 262 EHGLPNVDENG-N---AIDYASIFEAAPGALWELP-PGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA- 335 (456) Q Consensus 262 ~~~~~~~d~~g-~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~- 335 (456) +......+... + .+..........| +..++ .+.++.|++ ++++.+-+.+....+++|+.++||...|-+.+. T Consensus 329 dla~~L~~g~~~~l~~R~eli~~~Rsn~G-~~llDk~~Eefeq~s-tslSGLddVi~qf~q~VAgaa~IPltkLfGqSPk 406 (695) T protein:vir:78 329 DLAQALMPGANVDLSMRAELINRYRDNRN-ILFLDKATEEFFQFN-TPLSGLDALQAQAQEQMSAVSHIPLIKLLGITPT 406 (695) T ss_pred HHHHhhcChhHHHHHHHHHHHHHhcCccc-eEEEecCCcceEEEe-cccCCHHHHHHHHHHHHHhhhcCchhhhhccCCc Confidence 11111011111 1 1111122233333 34445 466777775 678888899999999999999999877655432 Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccccceEEecCCCCCCHHHHHHHH-------HHH Q lcl|Aclame:pro 336 --NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE-GESVEDTVDVSFESPDRVTLGEKYSAA-------SLA 405 (456) Q Consensus 336 --n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~-g~~~~~~i~v~f~~~~~~~~~e~ad~~-------~kl 405 (456) |.||++-..-|...+.- ..++.+.+.+++++.++.... |.. +.++.+.|++--..+..|.|++- +.+ T Consensus 407 GlNATGE~D~rnYYD~I~s--~Qe~~L~p~L~rl~~ii~rS~~G~i-dpdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~ 483 (695) T protein:vir:78 407 GLNASSEGEIRVWYDYVRA--YQRNALQQLMNDVIVMIQLSLFGAV-DPSIKWQWNALRELDDLEVAESRYKQAQSDVLY 483 (695) T ss_pred cccccchhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC-CCcceEEeCCCCCcCHHHHHHHHhhhhHHHHHH Confidence 78999766666665543 446889999999988876543 553 44689999999888888877653 334 Q ss_pred HhcCCCcHHHHHHhC------CCCc--cHH------HHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 406 KAAGESWASIRRNIL------NYNA--DQI------KQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 406 ~~~g~~s~~t~~~~~------~~~~--~~~------~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ..+|+++...++..+ +|.. |.. ++-+.+-.......+ ....+....+|++ T Consensus 484 ~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 547 (695) T protein:vir:78 484 VQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRL-AEGGDTGAPGGAR 547 (695) T ss_pred HHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCc-ccccccCCCCCCC Confidence 566888776665553 3421 100 011111111111000 0011112223333 No 124 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=99.20 E-value=6.4e-10 Score=71.00 Aligned_cols=395 Identities=9% Similarity=0.025 Sum_probs=163.8 Q ss_pred CC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MT----------ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~----------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~ 70 (456) |- .+.....++++- ......-+ |.+++..-+. ....+.+.. -...+.+.+|+..+.- T Consensus 43 ~~~~~~~~~~~~~d~~~~~~~r~g---------~~~~~~~~-g~~~~~epp~-d~~~l~~l~--~~np~V~~aI~iia~~ 109 (648) T protein:vir:79 43 MPKGGGGGGSAKRDPKMSLVKRIG---------LAIMDGGG-GGRDFEEPEF-DFNEITSAY--NTEGYVRQAVDKYIEM 109 (648) T ss_pred cCCCCcccccccccchhHHHHHhH---------HHHHhhcC-CccccccCCc-CHHHHHHHH--hcChHHHHHHHHHHHH Confidence 10 111111121111 01111111 3333321111 112222221 1245788899999999 Q ss_pred hhcCCcccCCCccccHHHH-HH-HHHHhc---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceE---------------- Q lcl|Aclame:pro 71 IIPNGITVGGSADSDLALR-AR-RIWRDN---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT---------------- 129 (456) Q Consensus 71 l~g~~~~~~~~~d~~~~~~-l~-~~~~~n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~---------------- 129 (456) +.+-|+.+....+...... .. ....-| ....+...+..+.+.+|.||+.+-.+.+|.+- T Consensus 110 ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYveiiRd~~G~~~~~l~~~~~~~~~~v~~ 189 (648) T protein:vir:79 110 MFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIAKSRAKDALPFQGMNVMGVGDSMPVAG 189 (648) T ss_pred HhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCCCccchhhhhhhhccccceee Confidence 9888887654433322111 11 111222 33456777888899999999999888887421 Q ss_pred EEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccccccccccc Q lcl|Aclame:pro 130 ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVT 209 (456) Q Consensus 130 i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (456) +..++|..+.+..++.. . + ..|.....+... ...|.++.+.|+.. T Consensus 190 l~pl~p~~v~v~~d~~g-~-~---~~Y~y~~~g~~~-~~~~~~~dIIHik~----------------------------- 234 (648) T protein:vir:79 190 YFPLNLASMKVKRDKFG-M-I---KGWQQEQEGQDK-PQKFKPEDIVHIYY----------------------------- 234 (648) T ss_pred eEeecCceeEEEEcCCC-c-e---eeeEEEecCCce-eEEecCccEEEEcc----------------------------- Confidence 12233333333332110 0 0 000001011010 01122222222110 Q ss_pred CceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhcccee Q lcl|Aclame:pro 210 GSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALW 289 (456) Q Consensus 210 ~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~ 289 (456) .+ ......|.|.+......++....+.........-.+.|-.++.-. .+....+...... ..+......+. T Consensus 235 --~~---~~d~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~-~~~~~~e~~k~~~---e~~~~~~~~~~ 305 (648) T protein:vir:79 235 --KR---EKGRAFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVG-LEQEGFGAEEGEV---DLVRGEVENMD 305 (648) T ss_pred --CC---CCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeC-CCccchHHHHHHH---HHHHHhccccc Confidence 00 001123677665555444433332222222222223333333210 0111111111111 11111222222 Q ss_pred ecCCCccee--ecc----ccchHHHHHHHHHHHHHHHhhcCCChhhhcccc-cc-chHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 290 ELPPGVDIW--ESQ----ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-AN-QSAEGAHNIEKGFLFKCEDRLSIAK 361 (456) Q Consensus 290 ~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n-~Sg~Al~~~~~~l~~k~~~~~~~f~ 361 (456) ..+.+++.. .+. ..++ .|++..+....+|+..-++|++.+|... +| .++++....+.. .+...+..+. T Consensus 306 i~gg~v~~~~~~i~~~~s~~dl-qfle~rk~~~~eIa~aFgVPP~lLG~~~~ss~stae~~~~~~~~---~i~~l~~~i~ 381 (648) T protein:vir:79 306 VEGGMVTTERVNISSIASNQII-DAKEYLKHFEQRAFTVLGVSELMMGRGGTASRSTGDNLSSDFKD---RIKALQKVMA 381 (648) T ss_pred ccccccccceeeccccCCHHHH-HHHHHHHHHHHHHHHHhCCCHhHcccCCCccchHHHHHHHHHHH---HHHHHHHHHH Confidence 222222211 111 1122 3777788888999999999999997422 22 234444333322 2222222222 Q ss_pred HHHHHHH-HHHH---HhcC-CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH--H--HHH Q lcl|Aclame:pro 362 IGLEAIL-VKAL---QIEG-ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK--Q--DDL 432 (456) Q Consensus 362 ~~l~~~~-~l~~---~~~g-~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~--~--~e~ 432 (456) ..+...+ +..+ .+.. ...++.+++.|.+....+....++.+.++.++|++|...+++++|+.|-+.. + +-. T Consensus 382 ~~le~~~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~GilT~NEaR~~lGlpPi~~g~~~~~l~~ 461 (648) T protein:vir:79 382 TFINEFMVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHNAISEDEMRELIGRDPVDDGEGRAKMHL 461 (648) T ss_pred HHHHHHHHHHHhhhhhccccccccceEEEeecccchhhHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCcccccc Confidence 2222211 1111 1111 1123456777888777888888999999999999999999999998763211 1 100 Q ss_pred HHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 433 DRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 433 ~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +..............+.|..+|+. T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~ 485 (648) T protein:vir:79 462 QMVTIAQATALAALAPTPAGGSSA 485 (648) T ss_pred ccccchhccccccCCCCCCCCCCC Confidence 000000000001111112222221 No 125 >protein:vir:3520 Length: 720 # NCBI annotation: P19 # Family: family:all:487 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050980;genbank:gi:9633566;genbank:GeneID:1262313 Probab=99.19 E-value=6.9e-10 Score=70.81 Aligned_cols=443 Identities=13% Similarity=0.031 Sum_probs=183.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHhh--ccCcccccCcccch--h--hhhh-hhhhcCChHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGM-------SRVRLLARYSN--GDAPLPELTRNTSA--A--WRSF-QREARTNWGLMVRDS 66 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~-------~~~~~~~~YY~--g~~~i~~~~~~~~~--~--~~~~-~~k~~~n~~~~iVd~ 66 (456) |+..+.. ++.++...+.... .....-.+||. |++- +..... + +..- ...++.|.++.+|+. T Consensus 1 ma~~~~~-~l~~~~~~~~~~~~~~~~~r~~~~~d~~f~~~~G~QW----~~~~~~~~~~~l~~~~~P~~~~N~i~~~v~~ 75 (720) T protein:vir:35 1 MAETLQK-RHEQIMRKFDRAHSPQEAVREKCLEATRFARVPGGQW----EGATAAGSELGKHFEKYPKFEINKISTELNR 75 (720) T ss_pred CchHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCCCCC----CHHHHHHHHHHHhhCCCCeEEEccHHHHHHH Confidence 7666554 5555555443322 11212245664 6542 111110 0 0000 113667999999999 Q ss_pred HHHhhhcCCcccCC----C-ccccHHHH----HHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC----CCC-----ce Q lcl|Aclame:pro 67 VADRIIPNGITVGG----S-ADSDLALR----ARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR----DDG-----TA 128 (456) Q Consensus 67 ~~~~l~g~~~~~~~----~-~d~~~~~~----l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~----~~g-----~~ 128 (456) .+++..-+.+.+.. . +|.+..+. +..+++.|+.+.....++.+++++|.||+-|..+ .++ .+ T Consensus 76 v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~v~~d~~~~~d~~~~~~~i 155 (720) T protein:vir:35 76 IISEYRHNRITVKFRPGDKTASEALANKLNGLFRADYEETDGGEACDNAFDDGSTGGFGCFRLTTNLVNALDPMDERQRI 155 (720) T ss_pred HHhHHHhCCCceEEEcCCCcchHHHHHHHHHHHHHHHHhcCchHHHhHHHHHhhhccceeEEeeecccccCCCCccccee Confidence 99999766543321 1 23332332 4445677899999999999999999999988653 111 22 Q ss_pred EEEEE-ccceEEEEeeCCCCce----e-EEEEEEEEecC----------------------------CceeEEEEEeCCe Q lcl|Aclame:pro 129 TITAD-SPETMVVSVDPLQPWR----I-RAAMRWWRDLD----------------------------AESDFAIVWSGDG 174 (456) Q Consensus 129 ~i~~~-~p~~~~~i~d~~~~~~----~-~~~i~~~~~~~----------------------------~~~~~~~~~~~~~ 174 (456) ++..+ +|.. -+.|||..... . .++++.|-+.+ .......+|.... T Consensus 156 ~i~~v~~~~~-~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~d~~~~~~v~i~E~~~~~~ 234 (720) T protein:vir:35 156 CLEPIYDPAR-SVWFDPDAKKYDKSDAEWAFCMYSLSAEKYKAEYNKDPATLMSGIERSWDYDWYDVDVVYIAKYYEVKK 234 (720) T ss_pred eEecccCchh-heeecccccccChhhhhhhhhhcCCCHHHHHHhCCCccccccccccccccccccCCCceEEEEeeEEEE Confidence 33332 2221 34556543210 0 11111221100 0001111111111 Q ss_pred ---------------EEEEEEcccc--cc--c-----------ccceeec--cCCCcccccccccccCceeEEEEec--- Q lcl|Aclame:pro 175 ---------------WQKFARPCFV--QS--S-----------SRRRLVT--RISDSWVPVGDAVVTGSPPPVVVYQ--- 219 (456) Q Consensus 175 ---------------~~~~~~~~~~--~~--~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~pv~~~~--- 219 (456) ++.|...... .. . ..++.+. ...+........+..++.+|+|++- T Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~~g~~~l~~~~~~p~~~fP~vP~~g~r 314 (720) T protein:vir:35 235 ESVDVVSFQNPLTSETVTYDSDQLELVEDELADIGFIEAARRTIKRRRVYVSVVDGEGFLEKAQRIPGEHIPLIPVYGKR 314 (720) T ss_pred EEEEEEEeecCCCCCeeecCCccHHHHHHHHhhhccccccccceeEEEEEEEeeccchhcccCCCCCCCccceEEEEeee Confidence 1111000000 00 0 0000000 0011111111122223334554431 Q ss_pred -CCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccc-cccchhh--hh----hhhhhhhhccc Q lcl|Aclame:pro 220 -NPDG----MGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPN-VDENGNA--ID----YASIFEAAPGA 287 (456) Q Consensus 220 -n~~~----~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~-~d~~g~~--~~----~~~~~~~~~~~ 287 (456) ..+| .|-+..+++.+|.+|...|.++..+.. .+...-.|....... .....++ .. .........|. T Consensus 315 ~~~d~~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~--~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~G~ 392 (720) T protein:vir:35 315 WFIDDIERVEGHIAKAMDAQRLYNLQVSMLADSATQ--DTGSIPIVGKSQIKTLEKYWANRNKNRPAFLPLNEIVDKQGN 392 (720) T ss_pred eccCCCcccceeeecchhHHHHHHHHHHHHHHHHHc--CCccccccCcchHHHHHHHhhccccccccccccccccccCcc Confidence 1122 477788999999999999998876642 222222222111000 0000000 00 00000111222 Q ss_pred eeecCCCcceeeccc-cchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 288 LWELPPGVDIWESQA-NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEA 366 (456) Q Consensus 288 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~ 366 (456) +...+ .++...+. .-.+.+...+......|-.+||+.+..+|.. +|.||+|+...-..-..........+..+.++ T Consensus 393 ~~~~~--~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGi~~~~lG~~-sn~SG~Ai~~rq~qg~~~~~~~~Dnl~~~~~~ 469 (720) T protein:vir:35 393 IIAPP--TPVGYTQPQPLNQAMAALLQQTGADIQEVTGSSQAMQPMP-SNIAKETVNHLMHRSDMSSFIYLDNMAKSLKR 469 (720) T ss_pred cccCC--CcccccCCCCCchHHHHHHHHHHHHHHHHhCCChHHcCcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 21111 12222222 2224456667777778888899999999864 57999999987666555555666667777766 Q ss_pred HHHHHHHh----c---------CC-C-c-c------------------ccc-----eEEecC-CCCCC-HHHHHHHHHHH Q lcl|Aclame:pro 367 ILVKALQI----E---------GE-S-V-E------------------DTV-----DVSFES-PDRVT-LGEKYSAASLA 405 (456) Q Consensus 367 ~~~l~~~~----~---------g~-~-~-~------------------~~i-----~v~f~~-~~~~~-~~e~ad~~~kl 405 (456) +.++++.+ . |. . + . .++ .|.=.. |...+ ..+..++++.+ T Consensus 470 ~g~~lL~lI~~~y~~er~~RI~~ed~~~~~v~~n~~~~d~~~g~~v~~NDi~~g~yDv~v~~~p~~~s~req~~~~m~ql 549 (720) T protein:vir:35 470 AGEVWLSMAREVYGSDRQVRIVNADGTDDIALMSVVINDNQTGQVVAMNDLSSGRYDVTVDVGPSYTARRDATVSVLTNL 549 (720) T ss_pred HHHHHHHHHHHHcCCCcEEEEecCCCCcceEeechhhhccCCCceeeeecceeeeeEEEEecccCcccHHHHHHHHHHHH Confidence 66555432 1 11 0 0 0 001 111111 11222 23344555544 Q ss_pred HhcCCCcHH--------HHHHhCCCCc--cHHHHH----------------------HHHHHHHH----HHHHhhccccc Q lcl|Aclame:pro 406 KAAGESWAS--------IRRNILNYNA--DQIKQD----------------------DLDRAREQ----ITLFAGNPVQR 449 (456) Q Consensus 406 ~~~g~~s~~--------t~~~~~~~~~--~~~~~~----------------------e~~~~~e~----~~~~~~~~~~~ 449 (456) ..+ +++.. .+++.+.+.. +..+++ +++.+.++ +...... ... T Consensus 550 l~~-~~p~~~~~~~~~~~ile~~d~p~~~e~~erirk~~~~~~~~~~~~~e~qq~~a~~qq~~qq~~~e~~~aqa~-l~q 627 (720) T protein:vir:35 550 LAG-MLPQDPMRQVLQGIILDNMEGEGLDEFKEYNRKQLLTQGVVKPRNTEEEQMVAQMIQQAQQPNAELVAAQGV-LMQ 627 (720) T ss_pred HHh-cCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhhcchhcccCccChhHHHHHHHHHHHHHhHhHHHHHHHHH-HHH Confidence 332 22110 1122222210 000000 00000000 0000000 001 Q ss_pred ccCCCCC Q lcl|Aclame:pro 450 PQEDGSR 456 (456) Q Consensus 450 ~~~~Gs~ 456 (456) .+.+..| T Consensus 628 aqae~~k 634 (720) T protein:vir:35 628 GQAEVQK 634 (720) T ss_pred HHHHHHH Confidence 1111111 No 126 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.18 E-value=1.4e-10 Score=74.53 Aligned_cols=404 Identities=12% Similarity=0.066 Sum_probs=163.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----c---cCcccccCcccch--hhhhhhhhhcCC-hHHHHHHHHHHh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSN----G---DAPLPELTRNTSA--AWRSFQREARTN-WGLMVRDSVADR 70 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~----g---~~~i~~~~~~~~~--~~~~~~~k~~~n-~~~~iVd~~~~~ 70 (456) ||.- ++ |...|.....+..+.++.|. | +++-.+..-..+. .+..+......| .++.|||..++. T Consensus 1 ~~~~-----~~-~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~~~~~~~g~~~~~~~~~l~~~Yr~~~ia~~iVd~~~d~ 74 (449) T protein:vir:10 1 MTDK-----LT-LAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGK 74 (449) T ss_pred Cchh-----hH-HHHhhhcchhHHHHHHHHHHHHHhcCCcccchhhhhcCCcccCCHHHHHHHHhcCchhHHHHHhhhhh Confidence 5533 33 22223222223222222221 1 1111111001111 111122223345 557899999987 Q ss_pred hhcCCccc-CCCcc--ccHHHHHHHHH---HhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeC Q lcl|Aclame:pro 71 IIPNGITV-GGSAD--SDLALRARRIW---RDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDP 144 (456) Q Consensus 71 l~g~~~~~-~~~~d--~~~~~~l~~~~---~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~ 144 (456) +.-+.+.+ .+.+. .+....+...| ..+++.....++.+.+..+|.|++++..+ ||+..-..+.+. T Consensus 75 ~~~~~~~i~~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~i~i~v~-d~~~l~~Pl~~~-------- 145 (449) T protein:vir:10 75 CWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKG-------- 145 (449) T ss_pred hhhcCcccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEEEec-CCCCCCcccccC-------- Confidence 74333222 22111 11111222222 22455567778888888999988877664 343211111111 Q ss_pred CCCceeEEEEEEEEecCC------ceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe Q lcl|Aclame:pro 145 LQPWRIRAAMRWWRDLDA------ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY 218 (456) Q Consensus 145 ~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 218 (456) ..+..+..+|...-. ....-.++.| ..|.+.. ...+... ....-|...++.+... T Consensus 146 ---~~i~~i~v~~~~~i~~~~~~~dp~sp~yg~P-~~y~v~~--------------~~~g~~~-~~~~iH~SRl~~~~~~ 206 (449) T protein:vir:10 146 ---RGLQKVSVSWAGSLKVAEWDTGINSKTYGQP-KLWKYTE--------------RLPNGSS-RRVDIHPDRVFILGDY 206 (449) T ss_pred ---cceeeEEeeccccCChhhhhcCCCCCCCCCc-eEEEEee--------------eccCCCc-cceeeccceeEeecCC Confidence 112222222211000 0000011111 1111111 0001000 0111233333332111 Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHH-----HHHHHHHHhhh---HHhhcCCCccccc-cccchhhh-hhhhhhhhhccce Q lcl|Aclame:pro 219 QNPDGMGEVEPHIDIINRINRAELQ-----LLSTMAIQAFR---QRALKSTEHGLPN-VDENGNAI-DYASIFEAAPGAL 288 (456) Q Consensus 219 ~n~~~~s~~~~v~~liD~~~~~~s~-----~~~~~~~~~~~---~~~i~G~~~~~~~-~d~~g~~~-~~~~~~~~~~~~~ 288 (456) . ..|.|.++++..-+-.++++.-. +.+........ ..-+.|.....-. .++..... .....+..+.+.+ T Consensus 207 ~-~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 285 (449) T protein:vir:10 207 S-EDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVL 285 (449) T ss_pred C-CCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhccchhe Confidence 1 12556666543221112111100 01111100000 0011111110000 00111111 1111122222322 Q ss_pred eecCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 289 WELPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQ-SAEGAHNIEKGFLFKCEDRLSIAKIGLEA 366 (456) Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~ 366 (456) .++.+.++.+++ .++....+.+....+.+|+.++||...|-|.+ +.. |..=++. ....|..+|..+++.|++ T Consensus 286 -~i~~~~d~~~~~-~~~sgl~d~l~~~~q~iaaa~~IP~t~L~Gqsp~glnst~D~~n----yyd~i~~~Q~~l~p~le~ 359 (449) T protein:vir:10 286 -MTTQGATVTPLV-TSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTEDQKY----FNARCQSRRVDLSFEIED 359 (449) T ss_pred -eecCCcceEEEe-cccCChhHHHHHHHHHHHHHhCCCeeeeeccCccccccchhHHH----HHHHHHHHHHhhhHHHHH Confidence 334444454433 33455667788888999999999986665433 222 2222333 344445556678999999 Q ss_pred HHHHHHHhc-CCCccccceEEecCCCCCCHHHHHHH-------HHHHHhcC---CCcHHHHHHhCCCCccHHHHHHHHHH Q lcl|Aclame:pro 367 ILVKALQIE-GESVEDTVDVSFESPDRVTLGEKYSA-------ASLAKAAG---ESWASIRRNILNYNADQIKQDDLDRA 435 (456) Q Consensus 367 ~~~l~~~~~-g~~~~~~i~v~f~~~~~~~~~e~ad~-------~~kl~~~g---~~s~~t~~~~~~~~~~~~~~~e~~~~ 435 (456) ++.+++... |.. ..++.+.|+|-..++.+|.|+. +.+++.+| +++.+.++..+|+.+.....+..+ T Consensus 360 l~~~l~~s~~g~~-~~d~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~~~~~~e-- 436 (449) T protein:vir:10 360 FCDKLIELKIIDA-VAKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEPLGEE-- 436 (449) T ss_pred HHHHHHHhhcCCC-CCceeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHHhcccCCCCCCCCCC-- Confidence 998876543 443 3479999999999998887654 44455455 777777777777664211100000 Q ss_pred HHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 436 REQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 436 ~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +.+..++..+.+- T Consensus 437 --------~~de~~~~~d~~a 449 (449) T protein:vir:10 437 --------DGDEEDKATDSAA 449 (449) T ss_pred --------CCccccccCCcCC Confidence 0011111111111 No 127 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=99.17 E-value=5.4e-10 Score=71.37 Aligned_cols=395 Identities=10% Similarity=0.012 Sum_probs=175.5 Q ss_pred HHHHHHHHHHHHHHHH---H-------HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMS---R-------VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~---~-------~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) +-+++++..-+.-+.+ . ...+-.+..+... +..+... .-+.+.-...+|+..++-+..-|+ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~-----~al~~~~v~~~i~~ia~~ia~lp~ 71 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPS----TISVKGK-----NALKVATVFACIKILSESVSKLPL 71 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcC----ccccchh-----hhhccHHHHHHHHHHHHhhccCce Confidence 3445544332211000 0 0011111110000 0000000 001223345567777777777777 Q ss_pred ccCCC-cc---ccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCC Q lcl|Aclame:pro 77 TVGGS-AD---SDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQ 146 (456) Q Consensus 77 ~~~~~-~d---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~ 146 (456) .+-.. ++ ......+..++.. | .-..+...++...+.+|.||+++-.+..|++ .+.+++|..+.+..|+.- T Consensus 72 ~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~ 151 (432) T protein:vir:10 72 KIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVG 151 (432) T ss_pred EEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcc Confidence 65211 11 1112224444432 2 2345667888889999999999999999987 588999999888776432 Q ss_pred CceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCch Q lcl|Aclame:pro 147 PWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGE 226 (456) Q Consensus 147 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~ 226 (456) ... .....+|....+ ... ..|.+.++.|+... +| ...-.|.|. T Consensus 152 ~~~-~~~~~~y~~~~~-g~~-~~~~~~eiih~r~~-------------------------------~~---~~~~~G~s~ 194 (432) T protein:vir:10 152 LLN-SKTKMWYVVNTG-GQQ-RVLKPEEILHFKNG-------------------------------IT---LDGLVGVPT 194 (432) T ss_pred ccc-ccceEEEEEecC-CeE-EEEccccEEEecCC-------------------------------CC---CCCcccccH Confidence 111 111112221111 111 12333444433210 00 001136666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhh------hhccceeecCCCcceeec Q lcl|Aclame:pro 227 VEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFE------AAPGALWELPPGVDIWES 300 (456) Q Consensus 227 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 300 (456) +......++.......-......--+.|..+++.... ..++.-+.+ ...+. ...+.+..++.+.++.++ T Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~---l~~e~~~~~--~~~~~~~~~g~~n~~~~~vl~~g~~~~~l 269 (432) T protein:vir:10 195 MEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGD---LNEDAKKVF--RENFESMSSGLQNSHRIALMPVGYQFQPI 269 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCC---CCHHHHHHH--HHHHHHHhcccccCCcceecCCCceEEEc Confidence 6555444444332222111111212224433332111 111111111 11121 123456778888888776 Q ss_pred cccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCC Q lcl|Aclame:pro 301 QANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKAL-QIEGES 378 (456) Q Consensus 301 ~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~-~~~g~~ 378 (456) ..... ..|++..+....+|+..-++|++.++.... .+...+......+...|- .-+-..+.+.+...+ .-.... T Consensus 270 ~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~-~~~s~~e~~~~~~~~~~l---~P~~~~ie~~ln~kLl~~~~~~ 345 (432) T protein:vir:10 270 SLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSK-ATLNNIEQQQQQFYTDTL---QATLTMYEQEMTYKLFLDSELD 345 (432) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC-CCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcChhhcC Confidence 53322 346787888889999999999999974221 122222222222111110 111111222211100 000111 Q ss_pred ccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHHHHHHHHhhc--ccccccCCCC Q lcl|Aclame:pro 379 VEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAREQITLFAGN--PVQRPQEDGS 455 (456) Q Consensus 379 ~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~e~~~~~~~~--~~~~~~~~Gs 455 (456) ....+++.+......|..+.++++.++++.|+++...+++.+|+.|.+--+ .-.-..-..++..... .+.+...+++ T Consensus 346 ~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~ 425 (432) T protein:vir:10 346 KGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVS 425 (432) T ss_pred CCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCC Confidence 112244444556678899999999999999999999999999987642111 0000000000100000 1111222233 Q ss_pred C Q lcl|Aclame:pro 456 R 456 (456) Q Consensus 456 ~ 456 (456) + T Consensus 426 ~ 426 (432) T protein:vir:10 426 K 426 (432) T ss_pred C Confidence 3 No 128 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=99.17 E-value=5.4e-10 Score=71.37 Aligned_cols=395 Identities=10% Similarity=0.012 Sum_probs=175.5 Q ss_pred HHHHHHHHHHHHHHHH---H-------HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMS---R-------VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~---~-------~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) +-+++++..-+.-+.+ . ...+-.+..+... +..+... .-+.+.-...+|+..++-+..-|+ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~-----~al~~~~v~~~i~~ia~~ia~lp~ 71 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPS----TISVKGK-----NALKVATVFACIKILSESVSKLPL 71 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcC----ccccchh-----hhhccHHHHHHHHHHHHhhccCce Confidence 3445544332211000 0 0011111110000 0000000 001223345567777777777777 Q ss_pred ccCCC-cc---ccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCC Q lcl|Aclame:pro 77 TVGGS-AD---SDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQ 146 (456) Q Consensus 77 ~~~~~-~d---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~ 146 (456) .+-.. ++ ......+..++.. | .-..+...++...+.+|.||+++-.+..|++ .+.+++|..+.+..|+.- T Consensus 72 ~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~ 151 (432) T protein:vir:10 72 KIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVG 151 (432) T ss_pred EEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcc Confidence 65211 11 1112224444432 2 2345667888889999999999999999987 588999999888776432 Q ss_pred CceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCch Q lcl|Aclame:pro 147 PWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGE 226 (456) Q Consensus 147 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~ 226 (456) ... .....+|....+ ... ..|.+.++.|+... +| ...-.|.|. T Consensus 152 ~~~-~~~~~~y~~~~~-g~~-~~~~~~eiih~r~~-------------------------------~~---~~~~~G~s~ 194 (432) T protein:vir:10 152 LLN-SKTKMWYVVNTG-GQQ-RVLKPEEILHFKNG-------------------------------IT---LDGLVGVPT 194 (432) T ss_pred ccc-ccceEEEEEecC-CeE-EEEccccEEEecCC-------------------------------CC---CCCcccccH Confidence 111 111112221111 111 12333444433210 00 001136666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhh------hhccceeecCCCcceeec Q lcl|Aclame:pro 227 VEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFE------AAPGALWELPPGVDIWES 300 (456) Q Consensus 227 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 300 (456) +......++.......-......--+.|..+++.... ..++.-+.+ ...+. ...+.+..++.+.++.++ T Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~---l~~e~~~~~--~~~~~~~~~g~~n~~~~~vl~~g~~~~~l 269 (432) T protein:vir:10 195 MEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGD---LNEDAKKVF--RENFESMSSGLQNSHRIALMPVGYQFQPI 269 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCC---CCHHHHHHH--HHHHHHHhcccccCCcceecCCCceEEEc Confidence 6555444444332222111111212224433332111 111111111 11121 123456778888888776 Q ss_pred cccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCC Q lcl|Aclame:pro 301 QANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKAL-QIEGES 378 (456) Q Consensus 301 ~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~-~~~g~~ 378 (456) ..... ..|++..+....+|+..-++|++.++.... .+...+......+...|- .-+-..+.+.+...+ .-.... T Consensus 270 ~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~-~~~s~~e~~~~~~~~~~l---~P~~~~ie~~ln~kLl~~~~~~ 345 (432) T protein:vir:10 270 SLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSK-ATLNNIEQQQQQFYTDTL---QATLTMYEQEMTYKLFLDSELD 345 (432) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC-CCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcChhhcC Confidence 53322 346787888889999999999999974221 122222222222111110 111111222211100 000111 Q ss_pred ccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHHHHHHHHhhc--ccccccCCCC Q lcl|Aclame:pro 379 VEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAREQITLFAGN--PVQRPQEDGS 455 (456) Q Consensus 379 ~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~e~~~~~~~~--~~~~~~~~Gs 455 (456) ....+++.+......|..+.++++.++++.|+++...+++.+|+.|.+--+ .-.-..-..++..... .+.+...+++ T Consensus 346 ~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~ 425 (432) T protein:vir:10 346 KGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVS 425 (432) T ss_pred CCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCC Confidence 112244444556678899999999999999999999999999987642111 0000000000100000 1111222233 Q ss_pred C Q lcl|Aclame:pro 456 R 456 (456) Q Consensus 456 ~ 456 (456) + T Consensus 426 ~ 426 (432) T protein:vir:10 426 K 426 (432) T ss_pred C Confidence 3 No 129 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=99.17 E-value=5.4e-10 Score=71.37 Aligned_cols=395 Identities=10% Similarity=0.012 Sum_probs=175.5 Q ss_pred HHHHHHHHHHHHHHHH---H-------HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMS---R-------VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~---~-------~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) +-+++++..-+.-+.+ . ...+-.+..+... +..+... .-+.+.-...+|+..++-+..-|+ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~-----~al~~~~v~~~i~~ia~~ia~lp~ 71 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPS----TISVKGK-----NALKVATVFACIKILSESVSKLPL 71 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCCcC----ccccchh-----hhhccHHHHHHHHHHHHhhccCce Confidence 3445544332211000 0 0011111110000 0000000 001223345567777777777777 Q ss_pred ccCCC-cc---ccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCC Q lcl|Aclame:pro 77 TVGGS-AD---SDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQ 146 (456) Q Consensus 77 ~~~~~-~d---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~ 146 (456) .+-.. ++ ......+..++.. | .-..+...++...+.+|.||+++-.+..|++ .+.+++|..+.+..|+.- T Consensus 72 ~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~ 151 (432) T protein:vir:10 72 KIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVG 151 (432) T ss_pred EEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcc Confidence 65211 11 1112224444432 2 2345667888889999999999999999987 588999999888776432 Q ss_pred CceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCch Q lcl|Aclame:pro 147 PWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGE 226 (456) Q Consensus 147 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~ 226 (456) ... .....+|....+ ... ..|.+.++.|+... +| ...-.|.|. T Consensus 152 ~~~-~~~~~~y~~~~~-g~~-~~~~~~eiih~r~~-------------------------------~~---~~~~~G~s~ 194 (432) T protein:vir:10 152 LLN-SKTKMWYVVNTG-GQQ-RVLKPEEILHFKNG-------------------------------IT---LDGLVGVPT 194 (432) T ss_pred ccc-ccceEEEEEecC-CeE-EEEccccEEEecCC-------------------------------CC---CCCcccccH Confidence 111 111112221111 111 12333444433210 00 001136666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhh------hhccceeecCCCcceeec Q lcl|Aclame:pro 227 VEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFE------AAPGALWELPPGVDIWES 300 (456) Q Consensus 227 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 300 (456) +......++.......-......--+.|..+++.... ..++.-+.+ ...+. ...+.+..++.+.++.++ T Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~---l~~e~~~~~--~~~~~~~~~g~~n~~~~~vl~~g~~~~~l 269 (432) T protein:vir:10 195 MEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGD---LNEDAKKVF--RENFESMSSGLQNSHRIALMPVGYQFQPI 269 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCC---CCHHHHHHH--HHHHHHHhcccccCCcceecCCCceEEEc Confidence 6555444444332222111111212224433332111 111111111 11121 123456778888888776 Q ss_pred cccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCC Q lcl|Aclame:pro 301 QANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKAL-QIEGES 378 (456) Q Consensus 301 ~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~-~~~g~~ 378 (456) ..... ..|++..+....+|+..-++|++.++.... .+...+......+...|- .-+-..+.+.+...+ .-.... T Consensus 270 ~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~-~~~s~~e~~~~~~~~~~l---~P~~~~ie~~ln~kLl~~~~~~ 345 (432) T protein:vir:10 270 SLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSK-ATLNNIEQQQQQFYTDTL---QATLTMYEQEMTYKLFLDSELD 345 (432) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC-CCcccHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcChhhcC Confidence 53322 346787888889999999999999974221 122222222222111110 111111222211100 000111 Q ss_pred ccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHHHHHHHHhhc--ccccccCCCC Q lcl|Aclame:pro 379 VEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAREQITLFAGN--PVQRPQEDGS 455 (456) Q Consensus 379 ~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~e~~~~~~~~--~~~~~~~~Gs 455 (456) ....+++.+......|..+.++++.++++.|+++...+++.+|+.|.+--+ .-.-..-..++..... .+.+...+++ T Consensus 346 ~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~ 425 (432) T protein:vir:10 346 KGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGDTNGEVS 425 (432) T ss_pred CCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhccccccCCCCCCCCCC Confidence 112244444556678899999999999999999999999999987642111 0000000000100000 1111222233 Q ss_pred C Q lcl|Aclame:pro 456 R 456 (456) Q Consensus 456 ~ 456 (456) + T Consensus 426 ~ 426 (432) T protein:vir:10 426 K 426 (432) T ss_pred C Confidence 3 No 130 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=99.17 E-value=3.5e-10 Score=72.45 Aligned_cols=380 Identities=11% Similarity=0.078 Sum_probs=170.2 Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCC- Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVR----LLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGS- 81 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~----~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~- 81 (456) +-|.+++......+.+... .+..+.-|. .... ..-+.+.-...+|+..++-+-.-|+.+--. T Consensus 1 MG~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~-----~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~ 67 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETVDMTNPLLLQWLGVD--------PDTP-----RNQLSEATYFACLKILSESLGKLPLKMYQKT 67 (411) T ss_pred CchHHHHHhhccCcccccccchHHHHHHhcCc--------ccCh-----hhhhccHHHHHHHHHHHHhHhhCceeEEEec Confidence 3333333222111111000 011111110 0000 011222234567777777777777765211 Q ss_pred cc---ccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEE Q lcl|Aclame:pro 82 AD---SDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRA 152 (456) Q Consensus 82 ~d---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~ 152 (456) ++ ......+..++.. | .-..+...++...+.+|.||+++-.+ +|.+ .+..++|..+.+..|+........ T Consensus 68 ~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~ 146 (411) T protein:vir:81 68 ERGIVKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQALWILPSQYVTIVVDDRGLLGEKN 146 (411) T ss_pred CCceeeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceEEEEEECCceEEEEEcCcccccccc Confidence 11 1112234444432 3 23456677888899999999998877 4555 578899999998887543211111 Q ss_pred EEEE-EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHH Q lcl|Aclame:pro 153 AMRW-WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHI 231 (456) Q Consensus 153 ~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~ 231 (456) .+.+ |....+ +. ...+.++.+.|+.... + ...-.|.|.+..+. T Consensus 147 ~~~~~~~~~~~-g~-~~~~~~~eiih~k~~~-------------------------------~---~~~~~G~s~~~~~~ 190 (411) T protein:vir:81 147 AIWYRYNDPYD-GK-MYVFRNDEILHFKTSV-------------------------------T---FDGITGLSVRDVLK 190 (411) T ss_pred eEEEEEEecCC-ce-EEEEccccEEEEcCCC-------------------------------C---CCCcccccHHHHHH Confidence 1111 111111 11 1123334444332100 0 00113556554444 Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhh-h-hhhh--hhccceeecCCCcceeeccccc Q lcl|Aclame:pro 232 DIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDY-A-SIFE--AAPGALWELPPGVDIWESQAND 304 (456) Q Consensus 232 ~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 304 (456) ..++...... .....+|.. |.-+++.... ..++.-+.+.. . .... ...+.++.++.+.++.++...+ T Consensus 191 ~~i~~~~~~~---~~~~~~f~ng~~p~gil~~~~~---l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~ 264 (411) T protein:vir:81 191 HTVDGALESQ---KFMNNLYKTGLTGKAVLEYTGD---LNQEARDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKL 264 (411) T ss_pred HHHHHHHHHH---HHHHHHHhccCCCceEEEeCCC---CCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCCH Confidence 3333333222 222233333 4434432111 11111111111 0 0011 1234567788888887765432 Q ss_pred h-HHHHHHHHHHHHHHHhhcCCChhhhcccc-ccc-hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-- Q lcl|Aclame:pro 305 F-TPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQ-SAEGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE-- 377 (456) Q Consensus 305 ~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~-Sg~Al--~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~-- 377 (456) . ..+++..+....+|++.-++|++.+|... ++- +.+.. .+....|.-.+...+ ..+.+ .+... T Consensus 265 ~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie----~~l~~------~ll~~~~ 334 (411) T protein:vir:81 265 TDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEAQNLAFYVDTLLYVLKQYE----EEITY------KILSNDL 334 (411) T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH----HHHHh------hcCChhh Confidence 2 34677778888999999999999996432 221 22222 122222222221111 11111 11111 Q ss_pred -CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHHHHHHHHhhcccccccCC Q lcl|Aclame:pro 378 -SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAREQITLFAGNPVQRPQED 453 (456) Q Consensus 378 -~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~e~~~~~~~~~~~~~~~~ 453 (456) .....+++.+....-.|..+.++++.+++++|+++...+++.+|+.|.+--+ .-....--.++.++.+..+ .++. T Consensus 335 ~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~~~~~n~~pl~~~~~~~~k-gGd~ 411 (411) T protein:vir:81 335 ISQGHYFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYGNNLMANGNYIPLSMLGANYGK-GGDS 411 (411) T ss_pred cCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccCccchhhhhhhhcc-CCCC Confidence 1222344445555667889999999999999999999999999987753111 0000000001111111111 1111 No 131 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=99.17 E-value=2.7e-10 Score=73.04 Aligned_cols=385 Identities=13% Similarity=0.026 Sum_probs=182.5 Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc Q lcl|Aclame:pro 8 EWLPVLTKRIDDGM----SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD 83 (456) Q Consensus 8 ~~~~~l~~~~~~~~----~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d 83 (456) -+++++.++..... .-...+..+|-|..-. .+..+... .-+.......+|+..++-+..-|+.+-...+ T Consensus 1 m~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-----~al~~~~v~~~i~~Ia~~ia~l~~~~~~~~~ 73 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHEDGFNNILLNMFGGRKTA--SGERVSES-----NSLVQPDIFACVNVLSDDIAKLPIHTYKRTD 73 (416) T ss_pred CccchhcccccCccccCccchhHHHHhhcCcccc--cCceechh-----hhhccHHHHHHHHHHHHhhhhCceEEEEecC Confidence 23333332221110 1123344555443211 11111111 1122345567888888888777876421111 Q ss_pred c--c--HHHHHHHHHH-h-c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEE Q lcl|Aclame:pro 84 S--D--LALRARRIWR-D-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAA 153 (456) Q Consensus 84 ~--~--~~~~l~~~~~-~-n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) . + ....+..++. + | .-..+...++.+.+.+|.||+++-.+..|.+ .+.+++|..+.+..++..+. + T Consensus 74 ~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~-~--- 149 (416) T protein:vir:12 74 GGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGM-L--- 149 (416) T ss_pred CccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcE-E--- Confidence 1 1 1112333332 2 3 2345667888899999999999999888976 48889999998877654431 1 Q ss_pred EEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHH Q lcl|Aclame:pro 154 MRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDI 233 (456) Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~l 233 (456) +|....+... ..+.+..+.++... + .+...|.|.++..... T Consensus 150 --~~~~~~~g~~--~~~~~~eiih~~~~--------------------------~---------~~~~~G~s~i~~~~~~ 190 (416) T protein:vir:12 150 --WYQTVLNGKA--IELYDYEVLHFKGL--------------------------S---------TDGIHGKSPIGVVREH 190 (416) T ss_pred --EEEEecCCeE--EEecCccEEEecCc--------------------------C---------CCCcccccHHHHHHHH Confidence 1211111111 12233333333100 0 0011366666555544 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhh--hhccceeecCCCcceeeccccch-HHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFE--AAPGALWELPPGVDIWESQANDF-TPMLS 310 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 310 (456) ++.......-......-.+.|..++.-.. ...++.-+.+. ..+. ...+.+..++.+.++.++..... .-|++ T Consensus 191 i~~~~~~~~~~~~~~~ng~~p~~il~~~~---~~~~e~~~~~~--~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e 265 (416) T protein:vir:12 191 IGAQAAATKYNAKLYKNEATPRGILKVPA---FLDEKPKENVR--KEWKRVNKVENIAIIDYGLEYQSISMPLQEAQFVE 265 (416) T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEecCC---CCCHHHHHHHH--HHHHHHhcCCCeeecCCCceEEEccCChhhHHHHH Confidence 44433332222222222222433333211 11112112221 1111 13455677888888877654322 24677 Q ss_pred HHHHHHHHHHhhcCCChhhhcccc-ccch-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEE Q lcl|Aclame:pro 311 AIKEHIRQLSSATKTPLPMLMPDS-ANQS-AEGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVS 386 (456) Q Consensus 311 ~~~~~~~~i~~~t~~p~~~~~~~~-~n~S-g~Al--~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~ 386 (456) ..+....+|+.+-++|++.++... ++-| .+.. .+....|.-.+...+..+...| +.-........+++. T Consensus 266 ~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~l-------~~~~~~~~g~~i~fd 338 (416) T protein:vir:12 266 SMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQSIEYVRNTLQPWIVNFEQELNVKL-------FLDHDQKSGHYVKFN 338 (416) T ss_pred HHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCchhhcCCceEEee Confidence 788888999999999999997432 2222 2222 2222222222222222211111 000001122335555 Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHH--------HHHHHHHHH--HHHhhcccccccCCC Q lcl|Aclame:pro 387 FESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD--------DLDRAREQI--TLFAGNPVQRPQEDG 454 (456) Q Consensus 387 f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~--------e~~~~~e~~--~~~~~~~~~~~~~~G 454 (456) +......|..+.++++.+++.+|+++.-.+++.+|+.|-+--+. ..+...+.. ..-.+..+.++..+| T Consensus 339 ~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~n~~~~~~~~~~~~~~~~~~~~gge~~~~g 416 (416) T protein:vir:12 339 IDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDKYISSLNYVFLDFLEEYQRLKAGGAMKGGDNKNEG 416 (416) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccchhhccccccccCCCCCcCCC Confidence 55666788999999999999999999999999999876321110 001111110 000111222344444 No 132 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=99.17 E-value=6.3e-11 Score=76.52 Aligned_cols=386 Identities=10% Similarity=0.006 Sum_probs=172.0 Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMS-------RVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~-------~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) +-+++.+......... ....+..+.-.... ...+... . -..+.-...+|+..+.-+..-|+.+- T Consensus 1 M~~~~~~f~~~~r~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~--~---al~~~~v~~~i~~ia~~ia~l~~~~~ 71 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPS----TISVKGK--N---ALKVATVFACIKILSESVSKLPLKIY 71 (429) T ss_pred CchhhhhhcccccCcccccccCCChHHHHHHhcCCCC----cceechh--h---hhccHHHHHHHHHHHHhhccCceEEE Confidence 3344333321111000 00011111111000 0000000 0 01223345567777777766677652 Q ss_pred CCc-c---ccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCce Q lcl|Aclame:pro 80 GSA-D---SDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWR 149 (456) Q Consensus 80 ~~~-d---~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~ 149 (456) ... + ......+..++.. | ....+...++.+.+.+|.||+++-.+..|.+ .+.+++|..+.+..|+..... T Consensus 72 ~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~ 151 (429) T protein:vir:10 72 QEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLN 151 (429) T ss_pred EecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccccc Confidence 111 1 1111124444432 2 2345667888889999999999999999986 588899999888776432111 Q ss_pred eEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHH Q lcl|Aclame:pro 150 IRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEP 229 (456) Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~ 229 (456) . ....+|....+ ... ..|.++.+.|+.... ......|.|.++. T Consensus 152 ~-~~~~~~~~~~~-g~~-~~~~~~evih~~~~~----------------------------------~~~~~~G~s~i~~ 194 (429) T protein:vir:10 152 S-KTKMWYVVNTG-GQQ-RVLKPEEILHFKNGI----------------------------------TLDGLVGVPTMEY 194 (429) T ss_pred c-cceEEEEEccC-CeE-EEEccccEEEecCCC----------------------------------CCCCcccccHHHH Confidence 1 11112211111 111 123333333332100 0011136666655 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh------hhccceeecCCCcceeec Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE------AAPGALWELPPGVDIWES 300 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 300 (456) ....++....... ....+|.. |..+++.... ..++.-+.+ ...++ ...+.+..++.+.++.++ T Consensus 195 ~~~~i~~~~~~~~---~~~~~~~ng~~~~~il~~~~~---l~~e~~~~~--~~~~~~~~~g~~n~~~~~vl~~g~~~~~l 266 (429) T protein:vir:10 195 LKSTLENSASADK---FINNFYKQGLQVKGLVQYVGD---LNEDAKKVF--RENFESMSSGLQNSHRIALMPVGYQFQPI 266 (429) T ss_pred HHHHHHHHHHHHH---HHHHHHhccCCccEEEEcCCC---CCHHHHHHH--HHHHHHHhccccccCceeecCCCceEEEc Confidence 5444444332222 12233322 3333332111 111211111 11111 123456778888888776 Q ss_pred cccc-hHHHHHHHHHHHHHHHhhcCCChhhhcccc-ccch-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 301 QAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQS-AEGAH--NIEKGFLFKCEDRLSIAKIGLEAILVKALQIE 375 (456) Q Consensus 301 ~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~S-g~Al~--~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~ 375 (456) ...+ ...+++..+....+|+..-++|+..++... ++-| .+... +....|.-.+ ..+.+.+..- +. T Consensus 267 ~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~--------~~ie~~ln~k--l~ 336 (429) T protein:vir:10 267 SLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDTLQATL--------TMYEQEMTYK--LF 336 (429) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHH--------HHHHHHHHHh--hc Confidence 5332 224677788888999999999999996432 2222 12221 2222222222 1122221110 11 Q ss_pred CC---CccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHHHHHHHHhhc--cccc Q lcl|Aclame:pro 376 GE---SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAREQITLFAGN--PVQR 449 (456) Q Consensus 376 g~---~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~e~~~~~~~~--~~~~ 449 (456) .. .....+++.+......|..+.++++.+++++|+++...+++.+|+.|.+-.+ .-.-..-..++..... -+.+ T Consensus 337 ~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~d~~~~~~~k~g~ 416 (429) T protein:vir:10 337 LDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGNMLPIDMAGQAYLKGGD 416 (429) T ss_pred ChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccchhhccccccCCCC Confidence 11 1112234444455677899999999999999999999999999987642111 0000000000000000 0111 Q ss_pred ccCCCCC Q lcl|Aclame:pro 450 PQEDGSR 456 (456) Q Consensus 450 ~~~~Gs~ 456 (456) ...++++ T Consensus 417 ~~~~~~~ 423 (429) T protein:vir:10 417 TNGEVSK 423 (429) T ss_pred CCCCCCC Confidence 1122222 No 133 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=99.17 E-value=7.3e-11 Score=76.17 Aligned_cols=378 Identities=10% Similarity=-0.006 Sum_probs=164.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccH Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDL 86 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~ 86 (456) +-|.+.+..........-.-+-.+..+... +..+... .-+.+.-...+|+..+.-+.+-|+.... .. T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~-----~al~~~~V~~~v~~ia~~ia~~p~~~~~----~~ 67 (397) T protein:vir:38 1 MPLLKLNKSHSQGFSLNDPDWVNFLTGGEA----QKYVSAD-----TALKNSDIFSLIMQLSGDLAMVRYTSES----DR 67 (397) T ss_pred CcchhhhhcccCcccCCchhhhhhhcCCcC----CceechH-----HhhccHHHHHHHHHHHHHHhhCcccccc----cH Confidence 112221111000000000011111111110 0111110 0011223345566666666666665421 11 Q ss_pred HHHHHHHHHh-c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEecC Q lcl|Aclame:pro 87 ALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLD 161 (456) Q Consensus 87 ~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 161 (456) +..++.+ | ....+...+..+.+.+|.||+.+-.+.+|.+ .+..++|..+.+..+..... +.. ++ .... T Consensus 68 ---~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~-~~y--~~-~~~~ 140 (397) T protein:vir:38 68 ---SQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSG-LIY--NI-NFDE 140 (397) T ss_pred ---HHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCce-EEE--EE-Eecc Confidence 2222222 2 3345667888899999999999888888876 58899999988877654321 111 11 1111 Q ss_pred CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC-CCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 162 AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN-PDGMGEVEPHIDIINRINRA 240 (456) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n-~~~~s~~~~v~~liD~~~~~ 240 (456) ........+.++.+.|+.... ..+ ..|.|.+......++..... T Consensus 141 ~~~~~~~~~~~~eiih~~~~~-----------------------------------~~~~~~G~s~i~~~~~~i~~~~~~ 185 (397) T protein:vir:38 141 PAIGYMENVPAADVIHIRLLS-----------------------------------KNGGKTGISPLSALINEQQIKDAS 185 (397) T ss_pred ccccceeEecCccEEEecCCC-----------------------------------CCCccccccHHHHHHHHHHHHHHH Confidence 111111223344444432100 001 13667666555544443332 Q ss_pred HHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhh-h--hhhhhccceeecCCCcceeecccc-chHHHHHHHHHHH Q lcl|Aclame:pro 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYA-S--IFEAAPGALWELPPGVDIWESQAN-DFTPMLSAIKEHI 316 (456) Q Consensus 241 ~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 316 (456) ..-......-.+.|..+++-... ..++....+... . ......+....++.+.++.++... ....|++..+... T Consensus 186 ~~~~~~~f~ng~~~~~il~~~~~---~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~ 262 (397) T protein:vir:38 186 NELTLKALKQSVTASAVLTIQKG---GLLDAETRIARSKEISKQIHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTR 262 (397) T ss_pred HHHHHHHHhccCCccEEEEeCCC---CCHHHHHHHHHHHHHHhcccccCCceecCCCceEEecCCChhHHHHHHHHHHHH Confidence 22222222222233333332111 111111111110 0 011224456677888888776533 2334788889999 Q ss_pred HHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCH Q lcl|Aclame:pro 317 RQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTL 395 (456) Q Consensus 317 ~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~ 395 (456) .+|++.-++|+..+++..++ .|.+..+..+. .-..-....+...+.+. +... ..+.+.| ..-.+. T Consensus 263 ~~Ia~afgVp~~~lg~~~~~~~~~e~~~~~~~---~~l~P~~~~ie~~ln~~------l~~~---~~~~~~~--~~~~d~ 328 (397) T protein:vir:38 263 DQIAKVYGVPDSYLNGQGDQQSSITQISGQYA---KSLNRYVQAIVGELNDK------LHAN---ISANIRF--AIDAMG 328 (397) T ss_pred HHHHHHhCCCHHHhCCCCCcccHHHHHHHHHH---HHHHHHHHHHHHHHHHh------ccCh---hcccccc--cccCCH Confidence 99999999999999865432 23333222221 11111111122222111 1111 1122222 234567 Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH---HHHHH-HHHHHHH--HhhcccccccCCCCC Q lcl|Aclame:pro 396 GEKYSAASLAKAAGESWASIRRNILNYNADQIKQ---DDLDR-AREQITL--FAGNPVQRPQEDGSR 456 (456) Q Consensus 396 ~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~---~e~~~-~~e~~~~--~~~~~~~~~~~~Gs~ 456 (456) .+.++++.++++.|+++...+++.+|+.+-+-.+ .+..- ....... -+++..+...+.|.- T Consensus 329 ~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~e~~~~ 395 (397) T protein:vir:38 329 DQYASTISSSVKGGTIAGNQARFILQNSGYLAKDLPDPEKEPQQAIQLIQQEGGENDGNNSDERGSD 395 (397) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccccccccccccccccccccCCCCCCCCCCCCCC Confidence 8889999999999999999999998876521111 00000 0000000 000011111111111 No 134 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=99.17 E-value=4.3e-10 Score=71.93 Aligned_cols=401 Identities=11% Similarity=0.015 Sum_probs=173.5 Q ss_pred HHHHHHHHHHHHHHH-HHHHHH------HHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGM-SRVRLL------ARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 7 ~~~~~~l~~~~~~~~-~~~~~~------~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) +-|+..|........ ...... ...+.... ....+..+... .-+.+.=...+|+..+.-+.+-|+.+- T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~V~~~-----~al~~~~V~~~v~~Ia~~iA~lp~~~~ 74 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGA-VAASGETVTPH-----DALQVSAVFASVRLLSETIATLPLSTY 74 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcc-cccCCceechH-----HhhccHHHHHHHHHHHHhhccCceEEE Confidence 334444332211110 000000 00000000 00001111110 001111234567777777777777652 Q ss_pred CCc---c-ccHHHHHHHHHHh--cC--hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 80 GSA---D-SDLALRARRIWRD--NR--MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 80 ~~~---d-~~~~~~l~~~~~~--n~--~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 150 (456) ... . ......+...+.. |. ...+...++...+.+|.||+.+-.+ .|++ .+..++|..+.+..+....... T Consensus 75 ~~~~~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~~ 153 (457) T protein:vir:13 75 SKRGGSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIVGLDVLDPTKIHVHMVMVDGLRR 153 (457) T ss_pred EecCCcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEccCceEEEEecCCCccc Confidence 111 1 1112223444432 22 2356677888889999999988554 4655 5788889988887654332221 Q ss_pred EEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC-CCCCchHHH Q lcl|Aclame:pro 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN-PDGMGEVEP 229 (456) Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n-~~~~s~~~~ 229 (456) ..+..|.....+.......|.++.++++.... ..+ -.|.|.++. T Consensus 154 ~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~-----------------------------------~~~~~~G~s~i~~ 198 (457) T protein:vir:13 154 KVFEAYDIDADGNEVLLGWFTPRDVLHIPGMM-----------------------------------LPGDFVGCSPISY 198 (457) T ss_pred eeEEEEEEecCCceeeEEeeCccceEEecCCC-----------------------------------CCCccccccHHHH Confidence 11111222222233333345555555542100 001 136666555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhh--hhhh--hhccceeecCCCcceeeccccch Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYA--SIFE--AAPGALWELPPGVDIWESQANDF 305 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 305 (456) ....|+....+..-......-.+.|..+++.... ..++.-+.+... .... ...+++..++.+.++.++...+. T Consensus 199 ~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~---ls~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~ 275 (457) T protein:vir:13 199 ARESIGLALAAQKYGSKFFANGAMPGAVVEVPGT---MSEEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPD 275 (457) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCC---CCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChh Confidence 4444433332221111111222223333332111 111211111110 0001 12355677888888877654322 Q ss_pred -HHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 306 -TPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGESVEDT 382 (456) Q Consensus 306 -~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~ 382 (456) ..|++..+....+|+..-++|++.+|....+ .++..++-+...+...+ .-+...+...+.+.+ + ........- T Consensus 276 d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L---~-~~~~~~~~~ 351 (457) T protein:vir:13 276 EAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLL---F-AETADRFRF 351 (457) T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---c-CccccCcee Confidence 2477878888899999999999998643322 22333333322222221 111122222222111 0 111111223 Q ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH---HHHHH----HHHHH-----HH--HHHhhcccc Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQDDL----DRARE-----QI--TLFAGNPVQ 448 (456) Q Consensus 383 i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~---~~~e~----~~~~e-----~~--~~~~~~~~~ 448 (456) +++.+......|..+.++++.++++.|+++...+++.+|+.|-+. ++.-. ....+ .. ......+.. T Consensus 352 i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 431 (457) T protein:vir:13 352 VKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAE 431 (457) T ss_pred EEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceeeccccccccccccccccCCCCCCCCCcc Confidence 455555666788899999999999999999988999998876321 11100 00000 00 000000111 Q ss_pred cccCCCCC Q lcl|Aclame:pro 449 RPQEDGSR 456 (456) Q Consensus 449 ~~~~~Gs~ 456 (456) .|..+..+ T Consensus 432 ~~~~~~~~ 439 (457) T protein:vir:13 432 EPDEEPEP 439 (457) T ss_pred ccCCCCCC Confidence 11111111 No 135 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=99.16 E-value=2.1e-10 Score=73.64 Aligned_cols=370 Identities=11% Similarity=0.014 Sum_probs=168.1 Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHhhccCcc--cc-----cCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 9 WLPVLTKRIDDGM--SRVRLLARYSNGDAPL--PE-----LTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 9 ~~~~l~~~~~~~~--~~~~~~~~YY~g~~~i--~~-----~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) ++--+.+.+.... +.......+.-...+. .. .+..+.. ..-+.+.-...+|+..++-+..-|+++. T Consensus 1 m~m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~al~~~~v~~~i~~ia~~ia~lp~~~~ 75 (392) T protein:vir:39 1 MILPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSA-----RAALRNSDLFSIILQLSSDLAIVKINAE 75 (392) T ss_pred CcchhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceech-----HHhhccHHHHHHHHHHHHhhccCceeec Confidence 1111111111100 0000000010000000 00 0000110 0001223345677888887777788764 Q ss_pred CCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEE Q lcl|Aclame:pro 80 GSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWR 158 (456) Q Consensus 80 ~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~ 158 (456) ..... ..+.+-.....-..+...+..+.+.+|.||+++-.+.+|.+ .+.+++|..+.+..++.... +. .+ +. T Consensus 76 ~~~~~---~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~-~~--y~-~~ 148 (392) T protein:vir:39 76 KKKNQ---GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENG-MY--YN-IT 148 (392) T ss_pred cchhh---hHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCce-EE--EE-EE Confidence 32221 11111111112245567788899999999999999999987 58888999988887654321 11 11 11 Q ss_pred ecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHH Q lcl|Aclame:pro 159 DLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRIN 238 (456) Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~ 238 (456) ..++.......|.++.+.|+.... .- ....|.|.++.....++... T Consensus 149 ~~~~~~~~~~~~~~~eiih~~~~~--------------------------~~--------~~~~G~s~i~~~~~~i~~~~ 194 (392) T protein:vir:39 149 FDDPKIEPILQAPQSDLIHMKLLS--------------------------ID--------GGKTGISPLYSLRRESKIQR 194 (392) T ss_pred ecCcccceeEEEccccEEEecCCC--------------------------CC--------CccccccHHHHHHHHHHHHH Confidence 111112222234444444432100 00 00136666655444443333 Q ss_pred HHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccccc-hHHHHHHHHH Q lcl|Aclame:pro 239 RAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQAND-FTPMLSAIKE 314 (456) Q Consensus 239 ~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 314 (456) .+.. ....+|.+ |.-+++ ........++.-......-.-....+.+..++.+.++.++.... ...|++..+. T Consensus 195 ~~~~---~~~~~f~ng~~p~gil~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~ 270 (392) T protein:vir:39 195 ASDR---LTISSLNSSLNVPGVLT-VKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDW 270 (392) T ss_pred HHHH---HHHHHHhccCCCceEEE-eCCCCCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHH Confidence 2221 12223332 222221 11111111111111111111112334566778888887775432 2357888888 Q ss_pred HHHHHHhhcCCChhhhccccccchH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCC Q lcl|Aclame:pro 315 HIRQLSSATKTPLPMLMPDSANQSA-EGAH-NIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDR 392 (456) Q Consensus 315 ~~~~i~~~t~~p~~~~~~~~~n~Sg-~Al~-~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~ 392 (456) ...+|++.-++|+..+|....+.|. ++.+ +....|.-.+...+..+...| .. .+++......- T Consensus 271 ~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L-----------~~----~~~~d~~~~~~ 335 (392) T protein:vir:39 271 TSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKL-----------SD----HISVNMRPAID 335 (392) T ss_pred HHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cc----cccccchhhhc Confidence 8899999999999999864443332 2222 222222222222222222111 11 11222222223 Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHhC---CCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 393 VTLGEKYSAASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 393 ~~~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .+..+.+..+.++..+|++++..+++++ |+.++++.+. + +..+.++.|+.+ T Consensus 336 ~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e~r~~------e-------~l~~~~~Gd~~~ 389 (392) T protein:vir:39 336 PLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP------E-------NTNKKTTGQSNE 389 (392) T ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccccchh------c-------CCCCCCCCCCCC Confidence 4566778888899999999998887765 8887654321 1 223334444444 No 136 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=99.16 E-value=2.1e-10 Score=73.64 Aligned_cols=370 Identities=11% Similarity=0.014 Sum_probs=168.1 Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHhhccCcc--cc-----cCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 9 WLPVLTKRIDDGM--SRVRLLARYSNGDAPL--PE-----LTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 9 ~~~~l~~~~~~~~--~~~~~~~~YY~g~~~i--~~-----~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) ++--+.+.+.... +.......+.-...+. .. .+..+.. ..-+.+.-...+|+..++-+..-|+++. T Consensus 1 m~m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~al~~~~v~~~i~~ia~~ia~lp~~~~ 75 (392) T protein:vir:10 1 MILPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSA-----RAALRNSDLFSIILQLSSDLAIVKINAE 75 (392) T ss_pred CcchhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceech-----HHhhccHHHHHHHHHHHHhhccCceeec Confidence 1111111111100 0000000010000000 00 0000110 0001223345677888887777788764 Q ss_pred CCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEE Q lcl|Aclame:pro 80 GSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWR 158 (456) Q Consensus 80 ~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~ 158 (456) ..... ..+.+-.....-..+...+..+.+.+|.||+++-.+.+|.+ .+.+++|..+.+..++.... +. .+ +. T Consensus 76 ~~~~~---~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~-~~--y~-~~ 148 (392) T protein:vir:10 76 KKKNQ---GIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENG-MY--YN-IT 148 (392) T ss_pred cchhh---hHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCce-EE--EE-EE Confidence 32221 11111111112245567788899999999999999999987 58888999988887654321 11 11 11 Q ss_pred ecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHH Q lcl|Aclame:pro 159 DLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRIN 238 (456) Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~ 238 (456) ..++.......|.++.+.|+.... .- ....|.|.++.....++... T Consensus 149 ~~~~~~~~~~~~~~~eiih~~~~~--------------------------~~--------~~~~G~s~i~~~~~~i~~~~ 194 (392) T protein:vir:10 149 FDDPKIEPILQAPQSDLIHMKLLS--------------------------ID--------GGKTGISPLYSLRRESKIQR 194 (392) T ss_pred ecCcccceeEEEccccEEEecCCC--------------------------CC--------CccccccHHHHHHHHHHHHH Confidence 111112222234444444432100 00 00136666655444443333 Q ss_pred HHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccccc-hHHHHHHHHH Q lcl|Aclame:pro 239 RAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQAND-FTPMLSAIKE 314 (456) Q Consensus 239 ~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 314 (456) .+.. ....+|.+ |.-+++ ........++.-......-.-....+.+..++.+.++.++.... ...|++..+. T Consensus 195 ~~~~---~~~~~f~ng~~p~gil~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~ 270 (392) T protein:vir:10 195 ASDR---LTISSLNSSLNVPGVLT-VKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDW 270 (392) T ss_pred HHHH---HHHHHHhccCCCceEEE-eCCCCCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHH Confidence 2221 12223332 222221 11111111111111111111112334566778888887775432 2357888888 Q ss_pred HHHHHHhhcCCChhhhccccccchH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCC Q lcl|Aclame:pro 315 HIRQLSSATKTPLPMLMPDSANQSA-EGAH-NIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDR 392 (456) Q Consensus 315 ~~~~i~~~t~~p~~~~~~~~~n~Sg-~Al~-~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~ 392 (456) ...+|++.-++|+..+|....+.|. ++.+ +....|.-.+...+..+...| .. .+++......- T Consensus 271 ~~~~Ia~~fgVpp~~lg~~~~~~~~~~~~~~f~~~~l~P~~~~ie~~l~~~L-----------~~----~~~~d~~~~~~ 335 (392) T protein:vir:10 271 TSKQYAKVYGLPDSYIGGQGDQQSSIQQISGMYASALNRYLRPAISELEYKL-----------SD----HISVNMRPAID 335 (392) T ss_pred HHHHHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cc----cccccchhhhc Confidence 8899999999999999864443332 2222 222222222222222222111 11 11222222223 Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHhC---CCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 393 VTLGEKYSAASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 393 ~~~~e~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .+..+.+..+.++..+|++++..+++++ |+.++++.+. + +..+.++.|+.+ T Consensus 336 ~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e~r~~------e-------~l~~~~~Gd~~~ 389 (392) T protein:vir:10 336 PLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLPAP------E-------NTNKKTTGQSNE 389 (392) T ss_pred cCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccccchh------c-------CCCCCCCCCCCC Confidence 4566778888899999999998887765 8887654321 1 223334444444 No 137 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=99.16 E-value=5.2e-10 Score=71.48 Aligned_cols=382 Identities=10% Similarity=-0.020 Sum_probs=176.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcccc- Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSD- 85 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~- 85 (456) +-++.++.++....+. ......+...-...-..+..... ..-+.+.....+|+..++-+..-|+.+-...+.. T Consensus 1 Mgl~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~g~~v~~-----~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~ 74 (409) T protein:vir:84 1 MSLFTRIFSGPSEERT-LTKISGIPSPAEDWAMHGDRPGA-----NSAMTLGAFYACVTLLADTVASLSIDAYRKKDNVR 74 (409) T ss_pred CchhhhhhcCCCcccc-cccccccccccchhhccCcccch-----hhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcc Confidence 2334333322211100 00000000000000000011100 0112233456778888888877787653221211 Q ss_pred -HHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEE-EeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEE Q lcl|Aclame:pro 86 -LALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTC-WRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWW 157 (456) Q Consensus 86 -~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v-~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 157 (456) ....+.+++.. | .-..+...++...+.+|.+|+++ +.+..|.+ .+..++|..+.+............ ..| T Consensus 75 ~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~--~~~ 152 (409) T protein:vir:84 75 IPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIE--PVY 152 (409) T ss_pred cccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEE--EEe Confidence 11223444432 2 33466677888999999999876 46777776 588899998877653322111110 011 Q ss_pred EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 158 RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRI 237 (456) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~ 237 (456) ..+ + ..|.++.+.|+... .+- ....|.|.++.....++.. T Consensus 153 -~~~--g---~~~~~~dvih~~~~-------------------------------~~~---~~~~G~s~i~~~~~~i~~~ 192 (409) T protein:vir:84 153 -RID--G---KVVPNHRIMHIKRY-------------------------------PVA---GCALGMSPIEKAASAIGLG 192 (409) T ss_pred -cCC--c---eEEchhhEEEecCC-------------------------------CCC---cccccccHHHHHHHHHHHH Confidence 011 1 11233333333110 000 0013666665544444333 Q ss_pred HHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhh-hhhhhhhccceeecCCCcceeeccccch-HHHHHHH Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDY-ASIFEAAPGALWELPPGVDIWESQANDF-TPMLSAI 312 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 312 (456) ..+ ......+|.. |..+++.... ..++.-+.+.. ........++++.++.+.++.++...+. ..|++.. T Consensus 193 ~~~---~~~~~~~f~ng~~p~gil~~~~~---l~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~ 266 (409) T protein:vir:84 193 LAA---ERYGLRWFRDSANPSGILSSDAD---LTPDQVKQTQKQWIQSHHNRRLPAVMSAGIKWQSVSITPNESQFLETR 266 (409) T ss_pred HHH---HHHHHHHHhcCCCccEEEecCCC---CCHHHHHHHHHHHHHHhccCCCeeecCCCceEEEccCChhHHHHHHHH Confidence 322 1222233332 3333332111 11111111111 0111123455777888888877764332 3477888 Q ss_pred HHHHHHHHhhcCCChhhhcccc-ccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEE Q lcl|Aclame:pro 313 KEHIRQLSSATKTPLPMLMPDS-ANQSAEGA-----HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVS 386 (456) Q Consensus 313 ~~~~~~i~~~t~~p~~~~~~~~-~n~Sg~Al-----~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~ 386 (456) +....+|+.+-++|++.++... ++.++..+ .+....|.-.+...+..|.. .+ .....+++. T Consensus 267 ~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~----~L---------~~g~~i~fd 333 (409) T protein:vir:84 267 SFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVRHTLLPWLRCIEQALDT----FL---------PRGQFVKFN 333 (409) T ss_pred HHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hc---------cCCCeEEEe Confidence 8888999999999999887432 22222223 33333333333333333322 11 112335555 Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHH-----HHHHHHHHHHH--HhhcccccccCCCCC Q lcl|Aclame:pro 387 FESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD-----DLDRAREQITL--FAGNPVQRPQEDGSR 456 (456) Q Consensus 387 f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~-----e~~~~~e~~~~--~~~~~~~~~~~~Gs~ 456 (456) +....-.|.++.++++.+++++|+++.-.+++.+|+.|-+--+. ....... ... .+....+....+|.| T Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~-~~~~~~~~~~~~~~~~~gn~ 409 (409) T protein:vir:84 334 VDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPMNFVPLGY-VPPEEPAQEPQPNSATEGNK 409 (409) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccc-CCccccCcCCCCCCccCCCC Confidence 66666788999999999999999999999999999876422110 0000000 000 011112222345555 No 138 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=99.15 E-value=3e-10 Score=72.79 Aligned_cols=389 Identities=11% Similarity=-0.007 Sum_probs=173.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc-c-- Q lcl|Aclame:pro 8 EWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD-S-- 84 (456) Q Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d-~-- 84 (456) -+.++..+.........+...-.+-|..+ .+..+.. .+-+.+.-...+|+..++-+..-|+.+-...+ . T Consensus 1 m~f~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~v~~-----~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~ 72 (409) T protein:vir:10 1 MLFRKGFKNQSQEISIDDKKILEWLGINP---SETYVNG-----KSCLKQATVFGCIRILSDNISKLPIKIYQKKDGIKR 72 (409) T ss_pred CcccccccCcCCCCCCChHHHHHHhcCCc---Ccceech-----hhhhccHHHHHHHHHHHHhhhhCceEEEEecCCeee Confidence 01111111110000000000000111100 0000000 00122334456777777777777876521111 1 Q ss_pred cHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEE-E Q lcl|Aclame:pro 85 DLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRW-W 157 (456) Q Consensus 85 ~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~-~ 157 (456) .....+..++.. | ....+...++...+.+|.||+++-.+..|.+ .+.+++|..+.+..++........-+.| + T Consensus 73 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~y~~ 152 (409) T protein:vir:10 73 VPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVWYLY 152 (409) T ss_pred ccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEEEEE Confidence 111223444432 3 2335667788889999999999999999986 4888899988887765321111111111 1 Q ss_pred EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 158 RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRI 237 (456) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~ 237 (456) ....+ .. ..+.++.+.|+... +. ....|.|.++.....++.. T Consensus 153 ~~~~g--~~-~~~~~~evih~r~~--------------------------~~---------d~~~G~s~i~~~~~~i~~~ 194 (409) T protein:vir:10 153 TDDLG--QR-HKFMSDEILHFKGL--------------------------TA---------DGLAGLSVIELLNHLIENG 194 (409) T ss_pred EeCCc--ee-EEeccccEEEecCc--------------------------CC---------CCcccccHHHHHHHHHHHH Confidence 11111 11 12333333332100 00 0012666655544444433 Q ss_pred HHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhh-hh-hhh--hhccceeecCCCcceeeccccch-HHHH Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDY-AS-IFE--AAPGALWELPPGVDIWESQANDF-TPML 309 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~-~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 309 (456) ..+. .....+|.+ |..+++.... ..++.-+.+.. .. ... ...+.+..++.+.++.++..... ..++ T Consensus 195 ~~~~---~~~~~~f~ng~~~~gil~~~~~---l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~ 268 (409) T protein:vir:10 195 KSSE---TYLNNFFKNGLQVKGLVQYAGD---LNPEAEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFL 268 (409) T ss_pred HHHH---HHHHHHHhccCCCcEEEEcCCC---CCHHHHHHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHH Confidence 3222 222233333 3333332110 11111111111 11 111 12345777888888877654322 3467 Q ss_pred HHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccccceEEec Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE-GESVEDTVDVSFE 388 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~-g~~~~~~i~v~f~ 388 (456) +..+....+|++.-++|+..++... +.++..+......+...|-. -+-..+.+.+...+-.. .......+++.+. T Consensus 269 e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~~~~~e~~~~~f~~~~l~---P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~ 344 (409) T protein:vir:10 269 ENSQLTIRQIASVFGVKMHQLNDLD-RATHSNITEQNREFYIDTLQ---SILNMYELEINYKLFLISEIKNGFYSKFNVD 344 (409) T ss_pred HHHHHHHHHHHHHhCCCHHHcCCCC-CCccccHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCchhccCCcEEEEech Confidence 8888888999999999999997432 12222222222222221111 11111222211100001 1112233455555 Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-HHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 389 SPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-QDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 389 ~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ...-.|..+.++++.+++++|+++.-.+++.+|+.|-+-- +.-.. .. ...+ +..+++...+|-| T Consensus 345 ~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD~~~~~--~n-~~~~-~~~~~~~~kgGe~ 409 (409) T protein:vir:10 345 TILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEGGDVLLIN--GN-MIPV-KMAGEQYSKGGEK 409 (409) T ss_pred hhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeec--cC-ccch-hhccccccccCCC Confidence 5567888999999999999999999999999998764211 10000 00 0001 1112233345666 No 139 >protein:vir:95449 Length: 584 # NCBI annotation: hypothetical protein ORF047 # Family: family:all:1548 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294640;genbank:gi:149408206;genbank:GeneID:5237016 Probab=99.14 E-value=1.3e-09 Score=69.28 Aligned_cols=431 Identities=13% Similarity=0.105 Sum_probs=198.3 Q ss_pred CCCCC--------HHHHHHHHHHHHHHHH-------HHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHH Q lcl|Aclame:pro 1 MTAST--------PAEWLPVLTKRIDDGM-------SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRD 65 (456) Q Consensus 1 ~~~~t--------~~~~~~~l~~~~~~~~-------~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd 65 (456) ||-.+ ++.+-.+++..|..-. .+.+.+++||.+...-. .....-...+++.+|.+.-.++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~el~~y~~a~~~~~-----~~~~~~~~r~~~~~~k~~~~~~ 75 (584) T protein:vir:95 1 MSVKVAELNSLLVRDSSAQWVAYLWDRFNNQRRQKIEEWKELRNYVFATDTTT-----TSNQGLPWKNSTTLPKLCQIRD 75 (584) T ss_pred CCcchhhhhhhccccchHHHHHHHHHHHHhhhchhhccCHHHHHHHHhhhhhh-----hhhcccccccccchhHHHHHHH Confidence 54221 2223344555443321 23467888988854311 1111111233677788877788 Q ss_pred HHHHhhhcCCc---------cc-CCCccccHHHHHHHH----HHhcChhHHHHHHHHHHhhCCeeEEEEEeCC------- Q lcl|Aclame:pro 66 SVADRIIPNGI---------TV-GGSADSDLALRARRI----WRDNRMDSVCKQWVKYGLDFGESYLTCWRRD------- 124 (456) Q Consensus 66 ~~~~~l~g~~~---------~~-~~~~d~~~~~~l~~~----~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~------- 124 (456) .++.++..-=| .+ .++.+......+... +.+.++...+..+++++.++|.|++.++-.. T Consensus 76 ~i~~~l~~~~Fp~~~w~~~v~~~~~~~~~~~~~ai~~~i~dkl~e~~~~~~~~~~i~d~~~~G~~~~k~~~~~~~~e~~e 155 (584) T protein:vir:95 76 NLHSNYFSSLFPNDDWLRWVGYGKGDSTKTKAKAIQAYMSNKCRESHFRTEVSKLIYDYIDYGNAFATVSFEAKYKEMTD 155 (584) T ss_pred HHHHHHHHhhcCccceeeeecCCCchhhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhhccCCceEEEEeEeecceeeec Confidence 87777753211 11 112222223333333 3556899999999999999999999886432 Q ss_pred ------CCceEEEEEccceEEEEeeCCCCc--eeEEEEEEEEec--------CC-------------------------- Q lcl|Aclame:pro 125 ------DGTATITADSPETMVVSVDPLQPW--RIRAAMRWWRDL--------DA-------------------------- 162 (456) Q Consensus 125 ------~g~~~i~~~~p~~~~~i~d~~~~~--~~~~~i~~~~~~--------~~-------------------------- 162 (456) -.++++..++|..+| |||.... ....++|.+... .+ T Consensus 156 ~~~v~~~~~prieriSP~d~~--~Dpsa~~i~d~~fivrs~~T~~~L~~l~~~~~~~~y~~d~v~~~~~~~~~~~~~~~~ 233 (584) T protein:vir:95 156 GTLVPDYIGPRLVRISPLDIV--FNPLATSISDTFKIVRSVKTKGELMRLAQDEPEQSYWLEALKRREEICRHLGGYSVE 233 (584) T ss_pred cccccccccceEEeeChhhee--ecCCCCCccchhhhhhhhhhHHHHHHHHhhcCccccchHHHHHHHHhccCCCCCccc Confidence 236899999999888 6665422 122222221100 00 Q ss_pred --cee-------EEEE---EeCC--eEEEEEEcccccc---cccceeeccCCCcccc-cccccccCceeEEEEe------ Q lcl|Aclame:pro 163 --ESD-------FAIV---WSGD--GWQKFARPCFVQS---SSRRRLVTRISDSWVP-VGDAVVTGSPPPVVVY------ 218 (456) Q Consensus 163 --~~~-------~~~~---~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~pv~~~------ 218 (456) .+. +..+ |.++ .+..|....+... .....++....+.... ....+...+.+|++.. T Consensus 234 ~~~~~~~~~~d~~~~~~ey~~~~~V~vl~~~g~~~~~~~~e~~~~~iv~v~~g~~iIR~~~np~~~~~~PF~~~~~~p~~ 313 (584) T protein:vir:95 234 DFDKAAGFDVDGFGNLYEYYMSDWVEILEFYGDYHDKETGELQTNRIITVVDRSTEVRNESIPTWFGSAPIYHVGWRFRP 313 (584) T ss_pred ccccccccccccccccccccCCceeEEEeecccccccccCCCcccceEEEEeccEEEEeeecCCCCCCCCEEEEcceeee Confidence 000 0001 1110 0111110000000 0001111111111111 1122334455555432 Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCccee Q lcl|Aclame:pro 219 QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIW 298 (456) Q Consensus 219 ~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (456) .+-+|.|....++++++.+|.+.-.+.+++..+..|.....+.. ......+|..+.....+.+. T Consensus 314 ~s~yG~gi~~ll~d~Q~~lna~~r~~iDnl~l~~~pv~k~~~~~----------------~~~~~~pg~~~~~~~~~~~q 377 (584) T protein:vir:95 314 DNLWAMGPLDNLVGMQYRIDHLENAKADAVDLIIQPPLKIIGEV----------------EEFVWGPGAEIHLDQGGDVQ 377 (584) T ss_pred ccccCCCchhhhhhHHHHHhHHHHHHHHHHHHhcCcceeecccc----------------chhcccCCceeecCCCCCcc Confidence 24579999999999999999999999999988888843332211 01123355555544333332 Q ss_pred eccccchHHHH---HHHHHHHHHHHhhcCCChhhhccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH Q lcl|Aclame:pro 299 ESQANDFTPML---SAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKCEDRLSIAKIGL-EAILVKALQ 373 (456) Q Consensus 299 ~~~~~~~~~~~---~~~~~~~~~i~~~t~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l-~~~~~l~~~ 373 (456) .+ +.+.+++. ..+..+...+...||+|...-|..++ +.++..+......+......+.+.|..++ ++++.++.+ T Consensus 378 ~~-~p~a~~~~s~~~~lq~~e~~me~~sGvp~~~~G~~~~~~~TAtg~s~l~naa~~~~r~~~~~f~~~ll~~l~~ll~~ 456 (584) T protein:vir:95 378 EI-AKNVNYIINADNQIQMLEDRMELYAGAPREAMGIRTPGEKTAFEVQQLGNAAGRIFQEKVTTFEVELLEPVLNAMLE 456 (584) T ss_pred ee-cCchhhhhHHHHHHHHHHHHHHhhhCCChhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22 22333433 23444555677789999887775432 34666677777777777777788888776 777777765 Q ss_pred hcC----CCcc------------------ccceEEe--cCCCCCCHHHHHHHHHHH---Hh--c-----CCCcHHHHH-- Q lcl|Aclame:pro 374 IEG----ESVE------------------DTVDVSF--ESPDRVTLGEKYSAASLA---KA--A-----GESWASIRR-- 417 (456) Q Consensus 374 ~~g----~~~~------------------~~i~v~f--~~~~~~~~~e~ad~~~kl---~~--~-----g~~s~~t~~-- 417 (456) +.- ..+. .+++-.| .........+.++..+.| .+ . +..+..... T Consensus 457 ~~~~nmd~~~~vr~~n~e~~~~~f~~i~r~Dl~g~~~~va~Ga~~~~~keq~~q~l~~ilq~~~~~~i~p~~~~~~l~~~ 536 (584) T protein:vir:95 457 TATRNMDGSDVIRVMDTDLGVKEFMSVTREDITANGKIRPIGARHFGKQAQDLQNLVGIFNSQIGQMILPHTSGKALATF 536 (584) T ss_pred HHHhhccccCceeeeccccccccccccChhhhccCeeEEeehhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHH Confidence 520 0110 0111111 111111122222222221 11 1 112222111 Q ss_pred -----HhCCCC---c--cHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 418 -----NILNYN---A--DQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 418 -----~~~~~~---~--~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .+.++. + ....+++.+....+........++.+ +.|+- T Consensus 537 ladl~~~p~~~~~~~~~~~~~Q~~~q~~~~~~q~~~~~~~~~~-~~~~~ 584 (584) T protein:vir:95 537 VDDVTGLQGYEIFRPNVAVAEQAETQSLVAQAQEDLQLQAQMP-AEGAI 584 (584) T ss_pred HHHHhCCCcccccCCCcccchhHHHHhhhHHHHHHHHHHHhhh-hccCC Confidence 122221 1 11112222111111111111112222 23333 No 140 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=99.14 E-value=1.2e-10 Score=74.91 Aligned_cols=386 Identities=10% Similarity=0.057 Sum_probs=173.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhh-hhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAW-RSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~-~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) .|.-+..++..+ +..-|-+... ...+......+ ... -..+.....+|+.++.-+-.-|+.+- T Consensus 9 ~~~p~~~~~~~~--------------~~~~~~~~~~-~g~~~~~~~~~~~~~--~~~~~~V~acV~~IA~~iA~lp~~l~ 71 (518) T protein:vir:78 9 LSAPAMAELSPQ--------------MQDSYYYAPA-VGMQLERQFSLYGGI--YKNQPWVRTVIAKRAQALARLPVKCM 71 (518) T ss_pred eccchhhhhhhh--------------hhhcccccce-eceecccccchhhHH--hhhhHHHHHHHHHHHHhhccCceEEE Confidence 222222222111 2222222111 11111110000 000 01234557778888887777777652 Q ss_pred C-Cccc--c-HHHHHHHHHHh-cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 80 G-SADS--D-LALRARRIWRD-NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 80 ~-~~d~--~-~~~~l~~~~~~-n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 150 (456) . ..+. + ....+..++.+ |. -..+...+....+.+|.+|+++-.+..|.+ .+.+++|..+.+..+..... + T Consensus 72 ~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~-~ 150 (518) T protein:vir:78 72 FTSGDTETEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGR-Y 150 (518) T ss_pred EEcCCccccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCE-E Confidence 1 1111 1 11123344433 32 234556788888899999999999999987 48899999998888754321 1 Q ss_pred EEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC-CCCCchHHH Q lcl|Aclame:pro 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN-PDGMGEVEP 229 (456) Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n-~~~~s~~~~ 229 (456) ..+|....+.......+.++.+.|+.... . .+ ..|.|-+.. T Consensus 151 ---~y~~~~~~~~~~~~~~~~~~eIiHir~~~--------------------------~---------dg~~~G~Spi~~ 192 (518) T protein:vir:78 151 ---EYYFQAGAGVGTQLVSFADDEVVPIRFFN--------------------------P---------DGLERGLSLMES 192 (518) T ss_pred ---EEEEEecCCccceeEEecCCcEEEecCCC--------------------------C---------CcccccccHHHH Confidence 11122222222222234444444432100 0 00 125555544 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh------hhccceeecCCCcceeec Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE------AAPGALWELPPGVDIWES 300 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 300 (456) ....++....+.. ....+|.+ |..+++.... ..++.-+.+. ..|. ...+++..++.+.++..+ T Consensus 193 ~~~~i~~~~aa~~---~~~~~f~Ng~~p~gvl~~~~~---ls~e~~~~~k--~~~~~~~~G~~nag~~~vL~~G~~~~~l 264 (518) T protein:vir:78 193 LKSTIFSEDSSRN---ATAAMWKNAGRPNLVLRHEKR---LSPEAQQRLR--EQFDRAHAGSSNTGKTMVVEEGMEPIPL 264 (518) T ss_pred HHHHHHHHHHHHH---HHHHHHhcCCCccEEEecCCC---CCHHHHHHHH--HHHHHHhcCcccCCceeEcCCCceEEec Confidence 3333333222221 22233333 3334432111 1112112211 1121 123557778888888766 Q ss_pred cccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 301 QAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGES 378 (456) Q Consensus 301 ~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~ 378 (456) .... ...|++..+....+|+..-++|++.++... +.+...+......+...| .-+...+...+.+.+ +...+ T Consensus 265 ~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~-~st~sn~e~~~~~f~~~tL~P~~~~ie~eln~~L---~~~~~-- 338 (518) T protein:vir:78 265 QLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILD-RATFSNISAQMRAFYRDTMAIPIARIQSAMDKYV---GQYWV-- 338 (518) T ss_pred cCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccc-- Confidence 5332 234778888888999999999999986432 222222222222222211 111122222222111 10011 Q ss_pred ccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccH--H-HHHHH----HHHHHH-----HHHHh--- Q lcl|Aclame:pro 379 VEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ--I-KQDDL----DRAREQ-----ITLFA--- 443 (456) Q Consensus 379 ~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~--~-~~~e~----~~~~e~-----~~~~~--- 443 (456) ....+++........|..+.++++.+++++|+++...+++.+|+.+-+ . ++.-. ...... .+..+ T Consensus 339 ~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~gD~~~v~~n~~pl~~~~~~~~~g~~~~~~ 418 (518) T protein:vir:78 339 RKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAP 418 (518) T ss_pred CcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceecccccccccCCCCCCCC Confidence 122344444455678889999999999999999999999999986532 1 11000 000000 00000 Q ss_pred hcccccccCC----CCC Q lcl|Aclame:pro 444 GNPVQRPQED----GSR 456 (456) Q Consensus 444 ~~~~~~~~~~----Gs~ 456 (456) ..++..|.++ .++ T Consensus 419 ~~~~~~~~~~~~~~~~~ 435 (518) T protein:vir:78 419 KRPASTPVASLDQSPPA 435 (518) T ss_pred CCCCcccccccccCccc Confidence 0011111101 111 No 141 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=99.14 E-value=3.3e-10 Score=72.56 Aligned_cols=372 Identities=12% Similarity=-0.012 Sum_probs=169.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccc-----CcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCC Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPEL-----TRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGS 81 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~-----~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~ 81 (456) +-|.+.+.+..... ..-..++.+-.+-... +...... ..+...-...+|+..++-+.+-|+.+... T Consensus 1 M~~f~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~al~~~~v~~~i~~ia~~ia~~p~~~~~~ 71 (386) T protein:vir:49 1 MPIFNITNLATESP----PINQESFFDIADSDFLASLNSSEWVSAE-----NALKNSDLFSIISQLSNDLATAKITTSRK 71 (386) T ss_pred CchhhhhccCCCCc----ccchhhhhhhhhccccccccCCceechh-----hhhccHHHHHHHHHHHHHhhhCceeeccc Confidence 22332221111110 0011111110000000 1111111 01122234466777888777778876432 Q ss_pred ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 82 ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 82 ~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) .... .+.+-.....-..+...+....+.+|.||+.+-.+.+|.+ .+.+++|..+.+..++... .+.. .+... T Consensus 72 ~~~~---l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~-~~~y---~~~~~ 144 (386) T protein:vir:49 72 QLQG---IVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQN-GLYY---NITFD 144 (386) T ss_pred hhhh---hhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCc-eEEE---EEEEc Confidence 2211 1111111112345667788889999999999988888876 5888999998887764332 1111 11111 Q ss_pred CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~ 240 (456) +........+..+.++|+.... .. ..-.|.|.+..+...++..... T Consensus 145 ~~~~~~~~~~~~~evih~~~~~--------------------------~~--------~~~~G~s~l~~~~~~i~~~~~~ 190 (386) T protein:vir:49 145 DPHIAPKQHVPQNDILHFRLLS--------------------------VD--------GGLTSVSPLMALGREFNIQKAS 190 (386) T ss_pred CccccceeEEccccEEEecCCC--------------------------CC--------CccccccHHHHHHHHHHHHHHH Confidence 1111111233344444432100 00 0013666665555444433322 Q ss_pred HHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh-hhhhhhhccceeecCCCcceeeccccc-hHHHHHHHHHHHHH Q lcl|Aclame:pro 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY-ASIFEAAPGALWELPPGVDIWESQAND-FTPMLSAIKEHIRQ 318 (456) Q Consensus 241 ~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 318 (456) ..-..+...-.+.|..+++-... ..++....... ........++++.++.+.++..+.... ...+++..+....+ T Consensus 191 ~~~~~~~~~ng~~~~~il~~~~~---~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 267 (386) T protein:vir:49 191 DKLTISALKNALNANGILKIKGG---GLLDFKTKVSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQ 267 (386) T ss_pred HHHHHHHHHccCCccEEEEeCCC---CChHHHHHHHHHHHHhccCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHH Confidence 22211111222223333321111 11111111111 112234456677888888887775332 23578888889999 Q ss_pred HHhhcCCChhhhcccccc-chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHH Q lcl|Aclame:pro 319 LSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLF-KCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLG 396 (456) Q Consensus 319 i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~-k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~ 396 (456) |++.-++|+..++...++ .+++.++..+..... .+...+..|...| + ..+++......-.+.. T Consensus 268 Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~~i~~~l~~i~~~~~~~l-----------~----~~~~~~~~~~~~~d~~ 332 (386) T protein:vir:49 268 FAKVYGIPESIVGGDGDQQSSLEMIYNIYFKSVSRYLRPFVSEMSKKL-----------S----CEVDVDISPAVDPTGS 332 (386) T ss_pred HHHHhCCCHHHhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------c----chhcccchhhhccCHH Confidence 999999999999865433 345544433322221 1111111111111 1 1122223333445666 Q ss_pred HHHHHHHHHHhcCCCcHHHHHHhC---CCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 397 EKYSAASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 397 e~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +.+..+.+|..+|+++.-.+++++ |+.+.+..+.+ .. ..+...++++-.+ T Consensus 333 ~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~~~~~~~~------~~----~~~~~~gGd~~~~ 385 (386) T protein:vir:49 333 NYISLINSMVKSGTLAQNQGLYILQQAEILPKELPDGK------NP----NRTSLKGGEINEQ 385 (386) T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHhhCCCCCCcCcchh------cc----CCCCCCCCCCCCC Confidence 778888899999999998888765 45544332211 00 0000001111111 No 142 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=99.12 E-value=1.3e-09 Score=69.30 Aligned_cols=388 Identities=11% Similarity=0.041 Sum_probs=171.5 Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSR--VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADS 84 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~--~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~ 84 (456) +-|+.+..+. ....+. ....-...-|..... +..+... .. +.+.-.-.+|+..++-+.+-|+++...... T Consensus 1 Mg~f~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~a----l~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~ 72 (416) T protein:vir:81 1 MGIFYKNEKR-DLQYNEDDLQMMVQTLPGFQGTK--LRQYKDI-EA----IRHSDIFTAVMMIASDLARMPIRVTVNGQI 72 (416) T ss_pred CCcccccccc-cccCCCcchhHHHHHhccccccC--ccccchh-hh----hcchHHHHHHHHHHHhhccCceEEecCccc Confidence 1111110000 000000 000001111111000 0011000 00 111112336777777777778876433222 Q ss_pred cHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEE Q lcl|Aclame:pro 85 DLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWR 158 (456) Q Consensus 85 ~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~ 158 (456) .....+..++.. |. ...+...++...+.+|.||+++..+.+|.+ .+.+++|..+.+..|... .+.. ++. T Consensus 73 ~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g--~~~~---~~~ 147 (416) T protein:vir:81 73 NYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARG--RLYY---FHQ 147 (416) T ss_pred cccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCc--cEEE---EEE Confidence 222334444432 32 235567778888999999999999999987 488999999988876432 1211 111 Q ss_pred ecCC-ceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 159 DLDA-ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRI 237 (456) Q Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~ 237 (456) ..++ .......|.++.+.|+... + +..-.|.|.++.....++.. T Consensus 148 ~~~~~~~~~~~~~~~~evihir~~--------------------------------~---~d~~~G~s~i~~~~~~i~~~ 192 (416) T protein:vir:81 148 RIDSNGNNIERNVKFEDMLDIKFY--------------------------------S---LDGINGLSLLDTLSRTIESD 192 (416) T ss_pred EecCCCceeEEEEccccEEEeccC--------------------------------C---CCCccccCHHHHHHHHHHHH Confidence 1111 1111122333444333100 0 00112666665554444433 Q ss_pred HHHHHHHHHHHHHHhhhHHhhcCCCccccccccc-hhhhhh--hhhhh--hhccceeecCCCcceeeccccc-hHHHHHH Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAFRQRALKSTEHGLPNVDEN-GNAIDY--ASIFE--AAPGALWELPPGVDIWESQAND-FTPMLSA 311 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~-g~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 311 (456) .....-......-.+.|..++.-.. ...++. -..+.. ..... ...+++..++.+.++..+.... ...|++. T Consensus 193 ~~~~~~~~~~f~ng~~~~gil~~~~---~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~ 269 (416) T protein:vir:81 193 NNGKDFLNNFLRNGTHAGGILKMKG---VLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRE 269 (416) T ss_pred HHHHHHHHHHHhccCCCcEEEEeCC---CCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHH Confidence 3222111111111122333332110 111111 111110 11111 1234567778888877664322 2347787 Q ss_pred HHHHHHHHHhhcCCChhhhccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCC Q lcl|Aclame:pro 312 IKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEK-GFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESP 390 (456) Q Consensus 312 ~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~-~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~ 390 (456) .+....+|++.-++|+..++...++.|.+.....+. .|.- +...+...+.+. +........+++.+... T Consensus 270 ~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~l~P----~~~~ie~~ln~~------l~~~~~~~~~~f~~~~l 339 (416) T protein:vir:81 270 NKSSTREIAGVFGIPLHKFGIETANMSITDANLDYLSTLKP----YITCVCAELNFK------FNDEYVNREFKFDTTEI 339 (416) T ss_pred HHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHHHHHHH----HHHHHHHHHhhh------ccccccCceEEEechhh Confidence 788889999999999999986544444332222211 1111 111222222111 11222233445555555 Q ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-----H-----HHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 391 DRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-----D-----DLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 391 ~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-----~-----e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ...|..+.++++.+++++|+++...+++.+|+.|-+--. + ..+.. ++...-.......+..+|=. T Consensus 340 ~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~kgGe~ 414 (416) T protein:vir:81 340 RVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELV-DEYQMNKSRATDKKLKGGEE 414 (416) T ss_pred hccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccc-cccCcccccccccccCCCCC Confidence 667889999999999999999999999999987632111 0 00100 00000000000011112222 No 143 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=99.12 E-value=1.3e-09 Score=69.30 Aligned_cols=388 Identities=11% Similarity=0.041 Sum_probs=171.5 Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSR--VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADS 84 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~--~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~ 84 (456) +-|+.+..+. ....+. ....-...-|..... +..+... .. +.+.-.-.+|+..++-+.+-|+++...... T Consensus 1 Mg~f~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~a----l~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~ 72 (416) T protein:vir:45 1 MGIFYKNEKR-DLQYNEDDLQMMVQTLPGFQGTK--LRQYKDI-EA----IRHSDIFTAVMMIASDLARMPIRVTVNGQI 72 (416) T ss_pred CCcccccccc-cccCCCcchhHHHHHhccccccC--ccccchh-hh----hcchHHHHHHHHHHHhhccCceEEecCccc Confidence 1111110000 000000 000001111111000 0011000 00 111112336777777777778876433222 Q ss_pred cHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEE Q lcl|Aclame:pro 85 DLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWR 158 (456) Q Consensus 85 ~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~ 158 (456) .....+..++.. |. ...+...++...+.+|.||+++..+.+|.+ .+.+++|..+.+..|... .+.. ++. T Consensus 73 ~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g--~~~~---~~~ 147 (416) T protein:vir:45 73 NYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARG--RLYY---FHQ 147 (416) T ss_pred cccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCc--cEEE---EEE Confidence 222334444432 32 235567778888999999999999999987 488999999988876432 1211 111 Q ss_pred ecCC-ceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 159 DLDA-ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRI 237 (456) Q Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~ 237 (456) ..++ .......|.++.+.|+... + +..-.|.|.++.....++.. T Consensus 148 ~~~~~~~~~~~~~~~~evihir~~--------------------------------~---~d~~~G~s~i~~~~~~i~~~ 192 (416) T protein:vir:45 148 RIDSNGNNIERNVKFEDMLDIKFY--------------------------------S---LDGINGLSLLDTLSRTIESD 192 (416) T ss_pred EecCCCceeEEEEccccEEEeccC--------------------------------C---CCCccccCHHHHHHHHHHHH Confidence 1111 1111122333444333100 0 00112666665554444433 Q ss_pred HHHHHHHHHHHHHHhhhHHhhcCCCccccccccc-hhhhhh--hhhhh--hhccceeecCCCcceeeccccc-hHHHHHH Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAFRQRALKSTEHGLPNVDEN-GNAIDY--ASIFE--AAPGALWELPPGVDIWESQAND-FTPMLSA 311 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~-g~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 311 (456) .....-......-.+.|..++.-.. ...++. -..+.. ..... ...+++..++.+.++..+.... ...|++. T Consensus 193 ~~~~~~~~~~f~ng~~~~gil~~~~---~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~ 269 (416) T protein:vir:45 193 NNGKDFLNNFLRNGTHAGGILKMKG---VLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRE 269 (416) T ss_pred HHHHHHHHHHHhccCCCcEEEEeCC---CCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHH Confidence 3222111111111122333332110 111111 111110 11111 1234567778888877664322 2347787 Q ss_pred HHHHHHHHHhhcCCChhhhccccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCC Q lcl|Aclame:pro 312 IKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEK-GFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESP 390 (456) Q Consensus 312 ~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~-~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~ 390 (456) .+....+|++.-++|+..++...++.|.+.....+. .|.- +...+...+.+. +........+++.+... T Consensus 270 ~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~l~P----~~~~ie~~ln~~------l~~~~~~~~~~f~~~~l 339 (416) T protein:vir:45 270 NKSSTREIAGVFGIPLHKFGIETANMSITDANLDYLSTLKP----YITCVCAELNFK------FNDEYVNREFKFDTTEI 339 (416) T ss_pred HHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHHHHHHH----HHHHHHHHHhhh------ccccccCceEEEechhh Confidence 788889999999999999986544444332222211 1111 111222222111 11222233445555555 Q ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-----H-----HHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 391 DRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-----D-----DLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 391 ~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-----~-----e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ...|..+.++++.+++++|+++...+++.+|+.|-+--. + ..+.. ++...-.......+..+|=. T Consensus 340 ~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~kgGe~ 414 (416) T protein:vir:45 340 RVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELV-DEYQMNKSRATDKKLKGGEE 414 (416) T ss_pred hccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccc-cccCcccccccccccCCCCC Confidence 667889999999999999999999999999987632111 0 00100 00000000000011112222 No 144 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=99.10 E-value=1.6e-09 Score=68.79 Aligned_cols=404 Identities=10% Similarity=0.029 Sum_probs=171.7 Q ss_pred CCCHHHHHHHHHH----------HHHH--------HHHHHHHHHHHhhccCcc--------cccC-----c---ccchhh Q lcl|Aclame:pro 3 ASTPAEWLPVLTK----------RIDD--------GMSRVRLLARYSNGDAPL--------PELT-----R---NTSAAW 48 (456) Q Consensus 3 ~~t~~~~~~~l~~----------~~~~--------~~~~~~~~~~YY~g~~~i--------~~~~-----~---~~~~~~ 48 (456) -..-+-+++.+.. +... +.-.-+.+..+-.|+... ...+ + ..+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~r~~~~~~~~l 80 (551) T protein:vir:80 1 MKNKLGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDL 80 (551) T ss_pred CchhhhhHHHhhhccCChhhcccccccccceeeecccccHHHHHHhhccCcceeecccccceecCcccccCccccChhHH Confidence 1222334444431 0000 001122334444443321 0000 0 011112 Q ss_pred hhhhhh-hcCChHHHHHHHHHHhhhc-----------CCcccCC--------CccccHHHHHHHHHHhc---------Ch Q lcl|Aclame:pro 49 RSFQRE-ARTNWGLMVRDSVADRIIP-----------NGITVGG--------SADSDLALRARRIWRDN---------RM 99 (456) Q Consensus 49 ~~~~~k-~~~n~~~~iVd~~~~~l~g-----------~~~~~~~--------~~d~~~~~~l~~~~~~n---------~~ 99 (456) .+..+. ......+.+|+..+..+.. -|+.+.. ..+......+.+++.+- .+ T Consensus 81 ~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~ 160 (551) T protein:vir:80 81 HGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSF 160 (551) T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchH Confidence 221111 2234667777777765532 2232211 01111222344444331 23 Q ss_pred hHHHHHHHHHHhhCCeeEEEEEeCCCCceE-EEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEE Q lcl|Aclame:pro 100 DSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKF 178 (456) Q Consensus 100 ~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 178 (456) ..+...+..+.+.+|.||+.+-.+.+|++. +..++|..+.++.++.. ......++|+...++.. ...|.++.+.|+ T Consensus 161 ~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g-~~~~~~~~y~~~~~g~~--~~~~~~~eiiH~ 237 (551) T protein:vir:80 161 SSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADG-KIPDNGNRFVQVIDQKI--VATFNAREMAFA 237 (551) T ss_pred HHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCcc-ccccCceEEEEEeCCcE--EEEEcccceEEe Confidence 346667788889999999999889999874 89999999988876432 11111122222222211 112334444443 Q ss_pred EEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hH Q lcl|Aclame:pro 179 ARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQ 255 (456) Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~ 255 (456) .... ..+.. ....|.|.++.....++....+ ......+|.+ |. T Consensus 238 ~~n~----------------------~~~~~---------~~~~G~spi~~a~~~i~~~~a~---~~~~~~~f~Ng~~p~ 283 (551) T protein:vir:80 238 VRNP----------------------RSDIY---------ATGYGYPELEIALKQFIAHENT---EAFNDRFFSHGGTTR 283 (551) T ss_pred cccC----------------------CCCcc---------cccccccHHHHHHHHHHHHHHH---HHHHHHHHHcCCCcc Confidence 2100 00000 0012666555544444333322 2223344443 33 Q ss_pred Hhh--cCCCccccccccchhhhhhhhhhhh------hccceeec-CCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCC Q lcl|Aclame:pro 256 RAL--KSTEHGLPNVDENGNAIDYASIFEA------APGALWEL-PPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKT 325 (456) Q Consensus 256 ~~i--~G~~~~~~~~d~~g~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~ 325 (456) -++ .|.. ...++.-+.+ ...|.. ..+++..+ +.+.++..+.... ...|++..+....+|+.+-++ T Consensus 284 giL~~~~~~---~lt~e~~~~l--k~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgV 358 (551) T protein:vir:80 284 GILQIKAAQ---QQSQHALEIF--KREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYGI 358 (551) T ss_pred eEEEEcCCC---CCCHHHHHHH--HHHHHHHhcCccccCccccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhcC Confidence 222 2211 0111111111 111211 22333333 4566776654322 234888889999999999999 Q ss_pred Chhhhcccccc---------chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCH Q lcl|Aclame:pro 326 PLPMLMPDSAN---------QSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTL 395 (456) Q Consensus 326 p~~~~~~~~~n---------~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~ 395 (456) |++.+|....+ ++...++.....+...+ .-+.+.+...|.+.+ ... ....+.+.|......+. T Consensus 359 Pp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L------~~~-~~~~~~f~f~~~~~~~~ 431 (551) T protein:vir:80 359 DPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHI------VAE-FGDKYTFQFVGGDIKSE 431 (551) T ss_pred CHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh------ccc-cCCceEEEeeccChhhH Confidence 99999742211 11111222211111111 111122222222211 111 12346777887777777 Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHhCCCCcc-HHH-------------------HHHHHHHHHHHHHH----hhccccccc Q lcl|Aclame:pro 396 GEKYSAASLAKAAGESWASIRRNILNYNAD-QIK-------------------QDDLDRAREQITLF----AGNPVQRPQ 451 (456) Q Consensus 396 ~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~-~~~-------------------~~e~~~~~e~~~~~----~~~~~~~~~ 451 (456) ++.+.. .++..+|+++.-.+++.+|+.|. +-- ..+.+++++..+.. +....+.+. T Consensus 432 ~~~~~~-~~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (551) T protein:vir:80 432 LESVKI-LAEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVE 510 (551) T ss_pred HHHHHH-HHHHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCcchhhhhhccccccCcCCCCCCCCCC Confidence 777664 45667789999999999988652 100 00111111111111 111111111 Q ss_pred --CCCCC Q lcl|Aclame:pro 452 --EDGSR 456 (456) Q Consensus 452 --~~Gs~ 456 (456) .+++. T Consensus 511 ~~p~~~~ 517 (551) T protein:vir:80 511 DIPDGKD 517 (551) T ss_pred CCCCccc Confidence 11111 No 145 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=99.09 E-value=2.5e-09 Score=67.73 Aligned_cols=379 Identities=12% Similarity=0.045 Sum_probs=170.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) ..+.++..|... +..+..-|-|- -..+..+.+.. . +.+.=...+|+..++-+..-|+.+-. T Consensus 15 ~~~~~~~~~~~~-----------~~~~~~~~~g~---~~~g~~v~~~~-a----l~~~~V~~~v~~Ia~~iA~lp~~~~~ 75 (454) T protein:vir:93 15 GRDVREAGWTSL-----------FQAVAEPFAGA---WQQGVKADPEA-V----LSFHAVFACISLISQDIAKMRLRLMQ 75 (454) T ss_pred cccccchhhhhh-----------hhhhhhhhcch---hhcCcccChHH-h----hccHHHHHHHHHHHHhhccCceEEEE Confidence 111111111110 00000001110 00011111110 0 11112244677777777777776521 Q ss_pred -Ccc--cc--HHHHHHHHHHh-cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 81 -SAD--SD--LALRARRIWRD-NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 81 -~~d--~~--~~~~l~~~~~~-n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 150 (456) ..+ .. ....+..++.+ |. -..+...++..++.+|.||+++-.+.+|.+ .+.+++|..+.+++++.- .+ T Consensus 76 ~~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g--~~ 153 (454) T protein:vir:93 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDG--EV 153 (454) T ss_pred eccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCC--cE Confidence 111 11 11123334433 32 235667788899999999999989888987 588999999988876431 12 Q ss_pred EEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHH Q lcl|Aclame:pro 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPH 230 (456) Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v 230 (456) .. ++.............+..+.+.|+.... ......|.|.++.. T Consensus 154 ~y--~~~~~~~~~~~~~~~~~~~eViH~k~~~----------------------------------~~~~~~G~sp~~~~ 197 (454) T protein:vir:93 154 FY--RITPDRNCGITEAVTVPAREVIHDRFNC----------------------------------FFHPLIGLPPVYAA 197 (454) T ss_pred EE--EEEeccccccceeEEecCcceEEeccCC----------------------------------CCCCceeccHHHHH Confidence 11 1111111111111223344444432100 00111366655544 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh-----hhccceeecCCCcceeeccc Q lcl|Aclame:pro 231 IDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE-----AAPGALWELPPGVDIWESQA 302 (456) Q Consensus 231 ~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 302 (456) ...+.....+.. ....+|.+ |..++.-.. ...++.-..+. ..++ ...|++..++.+.++.++.. T Consensus 198 ~~~i~~~~~~~~---~~~~~f~ng~~p~gil~~~~---~l~~e~~~~~~--~~~~~~~~g~n~g~~~vl~~g~~~~~l~~ 269 (454) T protein:vir:93 198 GLAATQGHHIQE---NSTSFFRNGGRPSGVIEIPG---SITEENAKKLK--SNWDSGYTGENAGKTAILSNGAKYNPTTF 269 (454) T ss_pred HHHHHHHHHHHH---HHHHHHhccCCccEEEecCC---CCCHHHHHHHH--HHHHHHhcccccCCceeccCCceEEEccc Confidence 433333322221 12233333 333332111 01112211211 1111 12445667788888876653 Q ss_pred cc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 303 ND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAH-----NIEKGFLFKCEDRLSIAKIGLEAILVKALQIEG 376 (456) Q Consensus 303 ~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~-----~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g 376 (456) .+ ...|++..+....+|+..-++|++.++...+ .+...+. +....+.-.+...+ ..+.+.+ +.+ T Consensus 270 ~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~-~t~sn~e~~~~~f~~~~l~P~~~~ie----~~ln~~L-----~~~ 339 (454) T protein:vir:93 270 SPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQP-PSSDNVEALEQQYYSQCLQTLIESIE----LLLDEAL-----ETG 339 (454) T ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC-CcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHhh-----cCC Confidence 32 2347788888889999999999999974321 1222222 22222222222222 2222211 111 Q ss_pred CCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH-HH---------HHH-HH-HH-HH----H Q lcl|Aclame:pro 377 ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI-KQ---------DDL-DR-AR-EQ----I 439 (456) Q Consensus 377 ~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~-~~---------~e~-~~-~~-e~----~ 439 (456) ....+++.+......|..+.++++.++.++|+++...+++.+|+.+-+- ++ ++. .+ .. +. . T Consensus 340 --~~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (454) T protein:vir:93 340 --ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDAREDPFASS 417 (454) T ss_pred --CCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccCccchHhhhccCcccCCCCCC Confidence 2233555555666788899999999999999999999999999876321 00 000 00 00 00 0 Q ss_pred HHHhhcccccccCCCCC Q lcl|Aclame:pro 440 TLFAGNPVQRPQEDGSR 456 (456) Q Consensus 440 ~~~~~~~~~~~~~~Gs~ 456 (456) +.-+..+.+.+..||.+ T Consensus 418 ~~~~~~~~~~~~~d~~~ 434 (454) T protein:vir:93 418 GKTASVPQAVAASDGNK 434 (454) T ss_pred ccCCCCCCCCCCCCCCC Confidence 00111111122223333 No 146 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=99.06 E-value=1.6e-09 Score=68.84 Aligned_cols=393 Identities=13% Similarity=0.037 Sum_probs=177.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH----------HHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRV----------RLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~----------~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~ 70 (456) |++.+.+-+..++..-+....+.- .-..+.+ |-. .-..+..+..+ .-+.+.-...+|+..++- T Consensus 1 ~~~~~~mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~v~~~-----~al~~~~V~~~i~~Ia~~ 73 (432) T protein:vir:81 1 MPDEKKLGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDL-GII-ISDTGAAVNAD-----AIMRLDAVAACVKLVSQA 73 (432) T ss_pred CCchhhcchhhhhhhhcccccccccccccccccCccchhhh-ccc-ccccCcccchH-----hhhccHHHHHHHHHHHHh Confidence 888888877777644443322100 0000000 000 00001111110 001222345567777777 Q ss_pred hhcCCcccCC-Ccc--cc-HHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEE Q lcl|Aclame:pro 71 IIPNGITVGG-SAD--SD-LALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVV 140 (456) Q Consensus 71 l~g~~~~~~~-~~d--~~-~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~ 140 (456) +..-|+.+-. ..+ .+ ....+..++.. |. -..+...+...++.+|.||+++..+ +|++ .+.+++|..+.+ T Consensus 74 ia~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~-~g~~~~L~~l~~~~v~v 152 (432) T protein:vir:81 74 IAAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTI 152 (432) T ss_pred hhhCceeeEEecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEE Confidence 7777776421 111 11 12224444432 32 2345567788899999999988775 4665 577889999888 Q ss_pred EeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC Q lcl|Aclame:pro 141 SVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN 220 (456) Q Consensus 141 i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n 220 (456) ..|+.. + +. . .+...++.. ..+..+.+.|+... + .+- T Consensus 153 ~~~~~g-~-~~--y-~~~~~~g~~---~~~~~~~iih~r~~--------------------------------~---~dg 189 (432) T protein:vir:81 153 TTDPKG-N-TA--Y-RYRRTDGQM---IDIPKQQIWKIMGY--------------------------------S---LDG 189 (432) T ss_pred EECCCC-c-EE--E-EEEecCceE---EEEccccEEEecCC--------------------------------C---CCC Confidence 876532 1 11 1 111112211 11223333332100 0 000 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcce Q lcl|Aclame:pro 221 PDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDI 297 (456) Q Consensus 221 ~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (456) -.|.|-++.....++... .-......+|.. |.-++.- . ....++.-+.+...-.-....+++..++.+.++ T Consensus 190 ~~G~spi~~~~~~i~~~~---~~~~~~~~~f~ng~~~~gil~~-~--~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~ 263 (432) T protein:vir:81 190 ENGLSAIRYGAQIFGTAI---AAEAQAARAFRNGQLQSVYYQI-D--RFLTDDQYDSFAKKVSGSVEAGRAPLLEGGMDV 263 (432) T ss_pred cccccHHHHHHHHHHHHH---HHHHHHHHHHhcCCCcceEEec-C--CCCCHHHHHHHHHHHhhhhcCCCceecCCCceE Confidence 125555544433333322 222222333333 2222221 1 011111111111100001233567788888888 Q ss_pred eeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhcccccc--chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 298 WESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN--QSAEGAHNIEKGFLFKCE-DRLSIAKIGLEAILVKALQ 373 (456) Q Consensus 298 ~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n--~Sg~Al~~~~~~l~~k~~-~~~~~f~~~l~~~~~l~~~ 373 (456) .++.... ...|++..+....+||..-++|++.++....+ ..+..++-....+...|- -+...++..+.+ . T Consensus 264 ~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~------k 337 (432) T protein:vir:81 264 KSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIAL------N 337 (432) T ss_pred EEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHh------h Confidence 7765432 23477888888899999999999999753221 223333332222222111 111112222211 1 Q ss_pred hcCCCccccceEEe--cCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-H-HHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 374 IEGESVEDTVDVSF--ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-Q-DDLDRAREQITLFAGNPVQR 449 (456) Q Consensus 374 ~~g~~~~~~i~v~f--~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~-~e~~~~~e~~~~~~~~~~~~ 449 (456) +....+.....+.| ......+..+.++++.+++++|+++.-.+++++|+.+-+-. + +-.....-.++..+....+. T Consensus 338 Ll~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~~~~~~~~ 417 (432) T protein:vir:81 338 LLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGLQASPE 417 (432) T ss_pred ccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEeecCcccchhhhccCCCCC Confidence 11121222333444 44456788999999999999999999999999998763211 1 10000000011111111111 Q ss_pred ccCCCCC Q lcl|Aclame:pro 450 PQEDGSR 456 (456) Q Consensus 450 ~~~~Gs~ 456 (456) |..++.. T Consensus 418 ~~~~~~n 424 (432) T protein:vir:81 418 PASGLGN 424 (432) T ss_pred CCCCCCC Confidence 2111111 No 147 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=99.06 E-value=3.5e-09 Score=66.91 Aligned_cols=404 Identities=9% Similarity=0.028 Sum_probs=174.2 Q ss_pred CC---------------CCCHHHHHH--HHHHHHHHHHHHHHHHHHH--hhccCcccccCc-ccchhhh--hh--hhhhc Q lcl|Aclame:pro 1 MT---------------ASTPAEWLP--VLTKRIDDGMSRVRLLARY--SNGDAPLPELTR-NTSAAWR--SF--QREAR 56 (456) Q Consensus 1 ~~---------------~~t~~~~~~--~l~~~~~~~~~~~~~~~~Y--Y~g~~~i~~~~~-~~~~~~~--~~--~~k~~ 56 (456) +| =-.-.+.++ .++.-+..+.+... .+. +.++. ....+. ..+..+. .. +.... T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~kk~~i~~pfkkk~~~~~--~d~f~~s~es-~s~vtsls~pdaf~~vnVs~~~Alk 123 (945) T protein:vir:10 47 LTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFK--FNLFEYSPES-LMYLPSISDPDAFFLINLFRKYRFN 123 (945) T ss_pred hhhhhhhccceeeeeeeeehhhhHHHhhcccccccccccchh--hhhhhccCcc-ceecccccCccceeeehhhhhhhhc Confidence 11 000011111 00001111111100 011 22221 111110 1111110 00 00111 Q ss_pred CChHHHHHHHHHHhhhcCCcccC-CCcccc---------HHHHHHHHHHh-cC-h------hHHHHHHHHHHhhCCeeEE Q lcl|Aclame:pro 57 TNWGLMVRDSVADRIIPNGITVG-GSADSD---------LALRARRIWRD-NR-M------DSVCKQWVKYGLDFGESYL 118 (456) Q Consensus 57 ~n~~~~iVd~~~~~l~g~~~~~~-~~~d~~---------~~~~l~~~~~~-n~-~------~~~~~~~~~~~~~~G~a~~ 118 (456) ..-...+|+..++-+.+-|+.+- ..++.. ....+..++.+ |. + ......+..+.+.+|.||+ T Consensus 124 nsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYi 203 (945) T protein:vir:10 124 NDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAI 203 (945) T ss_pred cHHHHHHHHHHHhhhccCceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEE Confidence 22445678888888888887641 111110 12234455543 32 1 1244567788999999999 Q ss_pred EEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCC Q lcl|Aclame:pro 119 TCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRIS 197 (456) Q Consensus 119 ~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (456) .+..+.+|++ .+.+++|..+.+..++.... . .+|....++ .. ...|.+....++.+.. T Consensus 204 eIiRd~~G~ii~L~pLdPs~Vti~~ddDG~~-~---y~Yv~~idG-~~-~~~v~a~DvIlhirn~--------------- 262 (945) T protein:vir:10 204 VKIRDEQGNLVAITPVDGTTIKPILSEDTGI-V---VGYVQEVDG-AI-VAHFDKRDVVLFRQNL--------------- 262 (945) T ss_pred EEEECCCCcEEEEEEECCcceEEEEcCCCcE-E---EEEEEecCC-ce-EEEecCCceEEEeccC--------------- Confidence 9999999987 48899999998877654321 1 111111111 11 1122222221111100 Q ss_pred CcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHhh--cCCCccc----cc Q lcl|Aclame:pro 198 DSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQA----FRQRAL--KSTEHGL----PN 267 (456) Q Consensus 198 ~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~----~~~~~i--~G~~~~~----~~ 267 (456) +..+ .....|.|.++. +.+.+...+.-......+|. .|.-++ .|..... .. T Consensus 263 ----------s~DG------~~~GyGlSPIea---a~~aI~~alAaek~aar~FskNGa~PsGILsvkg~~~~d~k~~~~ 323 (945) T protein:vir:10 263 ----------TPDV------YMYGYSLPPIEI---LYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQ 323 (945) T ss_pred ----------CCCc------ccccCCchHHHH---HHHHHHHHHHHHHHHHHHHHhCCCccceEEEecCccccccccccc Confidence 0000 000124454443 33444333333223334442 232222 2211100 00 Q ss_pred -cccchhhhhhhhhhh-----hhccceeecCCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccchHH Q lcl|Aclame:pro 268 -VDENGNAIDYASIFE-----AAPGALWELPPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAE 340 (456) Q Consensus 268 -~d~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~ 340 (456) .++.-+.+ ...|. ...+..+.++.+.++.++...+ ...+++..+....+|++.-++|++.+|... +.++. T Consensus 324 LseEq~erl--Ke~wee~~sG~NnG~piVLdeGmef~pLs~s~~DaQfLEsrkfs~eeIArAFGVPP~lLG~~e-~st~S 400 (945) T protein:vir:10 324 LSREQLESI--QRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQDVGILE-GSNKA 400 (945) T ss_pred cCHHHHHHH--HHHHHHHhCCcccccceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccCC-CCCcc Confidence 01111111 11111 1123344567788887765432 234778888888999999999999996432 22222 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHh Q lcl|Aclame:pro 341 GAHNIEKGFLFK-CEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNI 419 (456) Q Consensus 341 Al~~~~~~l~~k-~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~ 419 (456) .+......+... ..-....+...+.+.+ ........+.+.|......+..+.++++.++.+.|+++...+++. T Consensus 401 NiEqq~~~Fv~~tL~Pil~~IEqeLNrkL------l~~~eg~~i~fdFd~ldl~D~ksraEal~kli~sGiLTiNEvRe~ 474 (945) T protein:vir:10 401 TAEVMASLTKAKGLEPLMATISKGFDEVV------SEFRNEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARME 474 (945) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccccCceeEEEecchhccCHHHHHHHHHHHHhCCCcCHHHHHHH Confidence 233222222222 2223333333333222 111223456788887777788899999999999999999999999 Q ss_pred CCCCccHHH-HH----------HHHHHHH---HHHHHhhccccccc-------CCCCC Q lcl|Aclame:pro 420 LNYNADQIK-QD----------DLDRARE---QITLFAGNPVQRPQ-------EDGSR 456 (456) Q Consensus 420 ~~~~~~~~~-~~----------e~~~~~e---~~~~~~~~~~~~~~-------~~Gs~ 456 (456) +|+.|-+-- .. +...... .-...+....++|. +++.+ T Consensus 475 lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~dEns~~ 532 (945) T protein:vir:10 475 KGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSV 532 (945) T ss_pred hCCCCCCCcceeeeccccccccccccccccCCCCcccccCCCCCCCCCCCCCCCCCCC Confidence 988653110 00 0000000 00000001111111 11111 No 148 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=99.03 E-value=3.3e-09 Score=67.11 Aligned_cols=390 Identities=8% Similarity=0.006 Sum_probs=174.6 Q ss_pred CCHHHHHHHHHHHHHHHHHH--HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCC Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDDGMSR--VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGS 81 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~~~~~--~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~ 81 (456) |.++-++.++...+....-. -..+..+ ..+.+.....- ..+.-..+.-...+|+..++-+..-|+.+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v--~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~ 72 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKLYDF------SPWKNRSFWGV--INNTLETNETIFSAITKLSNSMASLPLKMYED 72 (409) T ss_pred CCccchhhhhhhhhhhhhhcccccccccc------ccccCcccccc--chhhhhccHHHHHHHHHHHHhhhhCceeEeec Confidence 55555555544433222110 0011111 11111110000 00111223345667777777777778766322 Q ss_pred ccccHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEE Q lcl|Aclame:pro 82 ADSDLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMR 155 (456) Q Consensus 82 ~d~~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) .+ .....+..++.. |. -..+...++..++.+|.||+++..+.+|.+ .+..++|..+.+..++... .+ T Consensus 73 ~~-~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~-~~----- 145 (409) T protein:vir:93 73 YK-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-EL----- 145 (409) T ss_pred cc-cccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCc-EE----- Confidence 21 122234444432 42 244557788889999999999999989876 5888899988887765432 11 Q ss_pred EEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHH Q lcl|Aclame:pro 156 WWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIIN 235 (456) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD 235 (456) +|.......... .+.++.+.|+... .+ ...-.|.|.++.+...++ T Consensus 146 ~y~~~~~~g~~~-~~~~~eVih~r~~-------------------------------~~---~~~~~G~s~i~~~~~~i~ 190 (409) T protein:vir:93 146 YYSIHAATGNKL-IVHNMDMLHFKHI-------------------------------VA---SNMVQGISPIDVLKNTTD 190 (409) T ss_pred EEEEEcCCceEE-EEccccEEEeCCC-------------------------------CC---CCccccccHHHHHHHHHH Confidence 111111111111 2334444443210 00 000126666555444444 Q ss_pred HHHHHHHHHHHHHHHHhhhHHhh--cCCCccccccccchhhhhh-hhhhhhhccceeecCCCcceeeccccch-HHHHHH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAFRQRAL--KSTEHGLPNVDENGNAIDY-ASIFEAAPGALWELPPGVDIWESQANDF-TPMLSA 311 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~~~~~i--~G~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 311 (456) ..+.+.. . ....+..+-..+ .+... .++.-+.+.. ....-...+.+..++.+.++.++...+. ..|++. T Consensus 191 ~~~~~~~--~-~~~~~~~~~~~i~~~~~~l----~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~ 263 (409) T protein:vir:93 191 FDNAVRT--F-NLTEMQKPDSFMLKYGSNV----GKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVAS 263 (409) T ss_pred HHHHHHH--H-HHHhcCCCCceEEecCCCC----CHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHH Confidence 3322211 0 111112111111 11111 1111111111 1111123455677788888877753322 247777 Q ss_pred HHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCC Q lcl|Aclame:pro 312 IKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESP 390 (456) Q Consensus 312 ~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~ 390 (456) .+....+|+.+-++|++.++... +.+...++.....+...| .-+...+...+.+- ++.-.+......+++.+..- T Consensus 264 r~~~~~~Ia~~fgVPp~~lg~~~-~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~---Ll~~~~~~~~~~~~fd~~~l 339 (409) T protein:vir:93 264 ENLTRERVANVFQLPSVFLNARS-NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRK---LLTKTDREKNRYFKFNVKSY 339 (409) T ss_pred HHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCcccccCcceEEeechhh Confidence 77788999999999999997532 222222222222222211 01111111111110 10001111122233333444 Q ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-HHHHHHHHHHHHHHhhc--c---cccccCCC Q lcl|Aclame:pro 391 DRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-QDDLDRAREQITLFAGN--P---VQRPQEDG 454 (456) Q Consensus 391 ~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~~e~~~~~e~~~~~~~~--~---~~~~~~~G 454 (456) .-.|..+.++++.+++++|+++.-.+++.+|+.|-+-- +.-....--.++..... . ++....+| T Consensus 340 l~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:93 340 LRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred hccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccchhhcccccCCCCCcCCC Confidence 56788899999999999999999999999998764211 10000000000000000 0 11111222 No 149 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=99.03 E-value=1.8e-09 Score=68.55 Aligned_cols=385 Identities=12% Similarity=0.023 Sum_probs=171.6 Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCc-c- Q lcl|Aclame:pro 7 AEWLPVLTKRIDDG-MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA-D- 83 (456) Q Consensus 7 ~~~~~~l~~~~~~~-~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~-d- 83 (456) +-+++.|..+.... ......+...+.+..+- ..+..+..+ .-+.+.-...+|+..+.-+..-|+.+-... + T Consensus 1 Mg~f~~lf~r~~~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~-----~al~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~ 74 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTPAELADAIGLSYDT-YTGKQISSQ-----RAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSL 74 (414) T ss_pred CchhhhhhccCccCcccchhhHhHhhccCccc-cCCceechh-----hhhccHHHHHHHHHHHHHhccCceEEEEecCCc Confidence 33444443332111 11111222222221110 011111111 012233456677888887777777652111 1 Q ss_pred --ccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEE Q lcl|Aclame:pro 84 --SDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMR 155 (456) Q Consensus 84 --~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) ......+..++.. | ....+...++..++.+|.||+++..+ +|.+ .+.+++|..+.+.+++... +. . T Consensus 75 ~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~--~~---y 148 (414) T protein:vir:44 75 KQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDPGCVVPKLNSSWE--PV---Y 148 (414) T ss_pred eeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCceEEEEECCCCc--EE---E Confidence 1111123343321 2 33456677888899999999998766 5766 5888999998888764321 11 1 Q ss_pred EEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHH Q lcl|Aclame:pro 156 WWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIIN 235 (456) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD 235 (456) .+...++.. ..+.++.++++... + +....|.|-+......++ T Consensus 149 ~~~~~~g~~---~~~~~~evih~~~~--------------------------------~---~d~~~G~s~i~~~~~~i~ 190 (414) T protein:vir:44 149 QVTFPDGST---DVLSQEDIWHVRTL--------------------------------T---LDGLVGLNPIAYAREAIS 190 (414) T ss_pred EEEecCceE---EEEccccEEEecCC--------------------------------C---CCCcccccHHHHHHHHHH Confidence 111122211 12333444433100 0 011136665555444443 Q ss_pred HHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhh--hhhhh--hhccceeecCCCcceeeccccch-HH Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDY--ASIFE--AAPGALWELPPGVDIWESQANDF-TP 307 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~ 307 (456) ....... ....+|.. |..++.-.. ...++.-+.+.. ..... ...+++..++.+.++..+..... .. T Consensus 191 ~~~~~~~---~~~~~f~ng~~p~gil~~~~---~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~ 264 (414) T protein:vir:44 191 LAAATEE---HGARLFSNGAVTSGVLRTEQ---TLSDQAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQ 264 (414) T ss_pred HHHHHHH---HHHHHHhccCCCceEEEeCC---CCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChHHHH Confidence 3332221 22233332 333332111 111121111111 01111 12345677788888877653322 24 Q ss_pred HHHHHHHHHHHHHhhcCCChhhhcccc-ccc-hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 308 MLSAIKEHIRQLSSATKTPLPMLMPDS-ANQ-SAEG--AHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTV 383 (456) Q Consensus 308 ~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~-Sg~A--l~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i 383 (456) |++..+....+|+.+-++|+..++... ++- +.+. ..+....+.-.+.. +++.+...+-........-+ T Consensus 265 ~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~~~l~P~~~~--------ie~~ln~~L~~~~~~~~~~i 336 (414) T protein:vir:44 265 FLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLTR--------IEQRINTGLVRKSKQGVFYA 336 (414) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHH--------HHHHHHhhcCCccccCceEE Confidence 778788888999999999999987432 221 2121 12222222222211 22221111100111111223 Q ss_pred eEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHH-HHhhcccccccCCCCC Q lcl|Aclame:pro 384 DVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQIT-LFAGNPVQRPQEDGSR 456 (456) Q Consensus 384 ~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~-~~~~~~~~~~~~~Gs~ 456 (456) ++.+......|..+.++++.+++++|+++...+++.+|+.|-+--+.-... ..... .........+.+++.. T Consensus 337 ~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~-~n~~~~~~~~~~~~~~~~~~~~ 409 (414) T protein:vir:44 337 KFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTP-MNMTTKPSDGSKAGKQKDNANA 409 (414) T ss_pred EEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeccc-ccccccCCccccCCCCCCCCCC Confidence 444445556788999999999999999999999999998764211100000 00000 0000011111111111 No 150 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=99.02 E-value=4.8e-09 Score=66.17 Aligned_cols=395 Identities=14% Similarity=0.037 Sum_probs=175.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHhhcc-Ccc----cccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVR---LLARYSNGD-APL----PELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~---~~~~YY~g~-~~i----~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |.++--.-++.++...+....+.-. .......+. ..+ -..+..+.. ..-+.+.-...+|+..++-+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~-----~~al~~~~V~~~i~~Ia~~ia 75 (432) T protein:vir:10 1 MPDEKKLGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNA-----DAIMRLDAVAACVKLVSQAIA 75 (432) T ss_pred CCCCcccchhhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccch-----hhhhcchHHHHHHHHHHHhhh Confidence 5554444455544333322211000 000000000 000 001111111 001223344567788888777 Q ss_pred cCCcccCC-Cccc---cHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEe Q lcl|Aclame:pro 73 PNGITVGG-SADS---DLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSV 142 (456) Q Consensus 73 g~~~~~~~-~~d~---~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~ 142 (456) +-|+.+-. ..+. .....+..++.. |. -..+...+...++.+|.||+++..+ +|++ .+..++|..+.+.. T Consensus 76 ~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~~~~v~v~~ 154 (432) T protein:vir:10 76 AMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITT 154 (432) T ss_pred hCceeEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEE Confidence 77876421 1111 112234444432 32 2345567888899999999988775 5665 57888999998887 Q ss_pred eCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCC Q lcl|Aclame:pro 143 DPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPD 222 (456) Q Consensus 143 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~ 222 (456) |+.. + +. . .+...++. . ..+..+.++|+... .++.-. T Consensus 155 ~~~g-~-~~--y-~~~~~~g~--~-~~~~~~~iih~~~~-----------------------------------~~dg~~ 191 (432) T protein:vir:10 155 DTKG-N-TA--Y-RYRRTDGQ--M-IDIPKQQIWKIMGY-----------------------------------SLDGEN 191 (432) T ss_pred cCCC-c-EE--E-EEEecCce--E-EEEcCccEEEecCC-----------------------------------CCCCcc Confidence 6432 1 11 0 11111211 1 11233333332100 000112 Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceee Q lcl|Aclame:pro 223 GMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWE 299 (456) Q Consensus 223 ~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (456) |.|-++.....+ ...++-......+|.+ |--++.... ...++.-+.+...-.-....+++..++.+.++.+ T Consensus 192 G~spi~~~~~~i---~~~~~~~~~~~~~f~ng~~~~gil~~~~---~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~ 265 (432) T protein:vir:10 192 GLSAIRYGAQIF---GTAIAAEAQAARAFRNGQLQSVYYQIDR---FLTDDQYDSFAKKVSGSVEAGRAPLLEGGMDVKS 265 (432) T ss_pred cccHHHHHHHHH---HHHHHHHHHHHHHHhcCCCcceEEecCC---CCCHHHHHHHHHHHhhhhhCCCceecCCCceEEE Confidence 556554443333 3222222222333333 322332111 1111111111111001123356677888888877 Q ss_pred ccccc-hHHHHHHHHHHHHHHHhhcCCChhhhcccccc--chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 300 SQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN--QSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIE 375 (456) Q Consensus 300 ~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n--~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~ 375 (456) +.... ...|++..+....+||+.-++|++.+|....+ ..+..++.....+...| .-+.+.+...+.+- +. T Consensus 266 l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~~f~~~tl~P~~~~ie~~ln~k------L~ 339 (432) T protein:vir:10 266 LGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLSMTLSPWLRRIEQSIALN------LL 339 (432) T ss_pred ccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh------hc Confidence 65432 23477888888899999999999999753221 22333333222222211 11112222222211 11 Q ss_pred CCCccccceEEec--CCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-H-HHHHHHHHHHHHHhhcccccc- Q lcl|Aclame:pro 376 GESVEDTVDVSFE--SPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-Q-DDLDRAREQITLFAGNPVQRP- 450 (456) Q Consensus 376 g~~~~~~i~v~f~--~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~-~e~~~~~e~~~~~~~~~~~~~- 450 (456) .........+.|. .....|..+.++++.+++++|+++...+++.+|+.+-+-. . +-....--.++..+....++| T Consensus 340 ~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~~~~~~~~~~~pl~~~~~~~~~~~~ 419 (432) T protein:vir:10 340 SPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGLQASPEPA 419 (432) T ss_pred CccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEeecCcccchhhhcccCCCCCC Confidence 1112223344553 4456788899999999999999999999999998653211 1 100000000111111111111 Q ss_pred -------cCCCCC Q lcl|Aclame:pro 451 -------QEDGSR 456 (456) Q Consensus 451 -------~~~Gs~ 456 (456) +...|| T Consensus 420 ~~~~~~~~~~~~~ 432 (432) T protein:vir:10 420 SGLGNQQQDKVSK 432 (432) T ss_pred CCCCCcccccccC Confidence 111222 No 151 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=99.01 E-value=3.4e-09 Score=66.98 Aligned_cols=393 Identities=8% Similarity=-0.006 Sum_probs=173.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-cccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCc Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPL-PELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA 82 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i-~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~ 82 (456) |..+.++.++.+.+....- ..-+.+-.+. .+.+........ +.-..+.-...+|+..++-+..-|+.+-... T Consensus 1 ~~~~~~~~~~k~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~--~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~ 73 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWI-----DQSASKLYDFSPWKNKSFWGVIN--NTLETNETIFSAITKLSNSMASLPLKMYEDY 73 (409) T ss_pred CcccccchhhhhHHhhhhh-----cCCcccccccccccCccccccch--hhhhccHHHHHHHHHHHHhhhhCceeEeecc Confidence 4444444444443211110 0001111110 011111000000 0012233446677777777777787663222 Q ss_pred cccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 83 DSDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 83 d~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) + .....+..++.. | .-..+...++..++.+|.||+++.++..|++ .+.+++|..+.+..++... .+ + T Consensus 74 ~-~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~-~~-----~ 146 (409) T protein:vir:94 74 K-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-EL-----Y 146 (409) T ss_pred c-ccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCc-EE-----E Confidence 1 122234444432 3 2234456778889999999999999999986 5888999998888765432 11 1 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINR 236 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~ 236 (456) |......+... .+.++.+.|+... .+ ...-.|.|.+......++. T Consensus 147 y~~~~~~g~~~-~~~~~dvih~r~~-------------------------------~~---~~~~~G~s~l~~~~~~i~~ 191 (409) T protein:vir:94 147 YSIHAATGNKL-IVHNMDMLHFKHI-------------------------------VA---SNMVQGISPIDVLKNTTDF 191 (409) T ss_pred EEEEcCCceEE-EEccccEEEecCC-------------------------------CC---CCccccccHHHHHHHHHHH Confidence 11111111111 2333344433210 00 0001266655554444443 Q ss_pred HHHHHHHHHHHHHHHhhhHHhh--cCCCccccccccchhhhhh-hhhhhhhccceeecCCCcceeeccccch-HHHHHHH Q lcl|Aclame:pro 237 INRAELQLLSTMAIQAFRQRAL--KSTEHGLPNVDENGNAIDY-ASIFEAAPGALWELPPGVDIWESQANDF-TPMLSAI 312 (456) Q Consensus 237 ~~~~~s~~~~~~~~~~~~~~~i--~G~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 312 (456) ...+..- ....+..+-.++ .+... .++.-+.+.. ....-...+.+..++.+.++.++..... ..|++.. T Consensus 192 ~~~~~~~---~~~~~~~~~~~i~~~~~~l----~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~ 264 (409) T protein:vir:94 192 DNAVRTF---NLTEMQKPDSFMLKYGSNV----GKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASE 264 (409) T ss_pred HHHHHHH---HHHhcCCCCeeEEecCCCC----CHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHH Confidence 3322111 111112211111 11111 1111111111 1111234456777888888877653322 2467777 Q ss_pred HHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCC Q lcl|Aclame:pro 313 KEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCE-DRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPD 391 (456) Q Consensus 313 ~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~-~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~ 391 (456) +....+|++.-++|++.++... +.+...++.....+...|- -....+...+.+- ++.-.+.....-+++...... T Consensus 265 ~~~~~~Ia~~fgVPp~~lg~~~-~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~---Ll~~~~~~~~~~i~fd~~~ll 340 (409) T protein:vir:94 265 NLTRERVANVFQLPSVFLNARS-NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRK---LLTKTDREKNRYFKFNVKSYL 340 (409) T ss_pred HHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCcccccCcceEEeechhhh Confidence 7788999999999999997532 2222222222222222111 1111111222111 110011111122333333445 Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHH-HHHHHHHHHHHHhhccc-ccccCCCCC Q lcl|Aclame:pro 392 RVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD-DLDRAREQITLFAGNPV-QRPQEDGSR 456 (456) Q Consensus 392 ~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~-e~~~~~e~~~~~~~~~~-~~~~~~Gs~ 456 (456) -.+..+.++++.+++++|+++.-.+++.+|+.|-+--+. -....--.++....... ...+++.++ T Consensus 341 ~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~kGG~~n~~ 407 (409) T protein:vir:94 341 RADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVN 407 (409) T ss_pred ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeEeecccccccccchhhcccccCCCCCcC Confidence 678889999999999999999988999999876421110 00000000000000000 011111111 No 152 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=99.00 E-value=6.4e-09 Score=65.50 Aligned_cols=383 Identities=13% Similarity=0.078 Sum_probs=170.1 Q ss_pred HHHHHHHHHHHHHH-HHHHhhccC-ccc-------------ccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcc Q lcl|Aclame:pro 13 LTKRIDDGMSRVRL-LARYSNGDA-PLP-------------ELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGIT 77 (456) Q Consensus 13 l~~~~~~~~~~~~~-~~~YY~g~~-~i~-------------~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~ 77 (456) +.+..+....+.+. +.. |.|.. ... ..+..+.. ..-+.+.-...+|+.+++-+..-|+. T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~g~~~s~~~~~~~~~~~~~~~~~g~~v~~-----~~al~~~~v~~ci~~Ia~~ia~lp~~ 74 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLK-WLGVPISLTDGSFWSAWGGMGSSSGETVTA-----DSALQLSAVWSCVRLIAETIATLPLN 74 (437) T ss_pred CCcchhhhhhhhHHhhhh-hcCCcccCCchhHHHhhcccccCCCceech-----HhhhccHHHHHHHHHHHHHHhhCcee Confidence 11111111122211 111 22211 000 00000000 01112233455777777777766775 Q ss_pred cCC-Cccc----cHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCC Q lcl|Aclame:pro 78 VGG-SADS----DLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQ 146 (456) Q Consensus 78 ~~~-~~d~----~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~ 146 (456) +-. ..+. .....+..++.. | .-..+...++..++.+|.||+++-.+ .|.+ .+..++|..+.+..+... T Consensus 75 ~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~-~g~~~~L~~l~p~~v~i~~~~~g 153 (437) T protein:vir:10 75 LYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRS-AGVLIGLELMLPQRTTVKRLTSG 153 (437) T ss_pred EEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEECCCC Confidence 421 1111 111223444432 2 33456677888899999999999887 4766 478899998888765321 Q ss_pred CceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCch Q lcl|Aclame:pro 147 PWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGE 226 (456) Q Consensus 147 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~ 226 (456) .+. .+|...++.. ..+.++.+.|+... + ++-..|.|. T Consensus 154 --~~~---y~~~~~~g~~---~~~~~~dIih~r~~--------------------------~---------~d~~~G~sp 190 (437) T protein:vir:10 154 --ALQ---YTYRNVDGTV---STLAEDDVFHVRGF--------------------------S---------LDGLMGLTP 190 (437) T ss_pred --eEE---EEEEecCceE---EEEccccEEEecCc--------------------------C---------CCCcccccH Confidence 111 1122222211 12333444433100 0 001136665 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh------hhccceeecCCCcce Q lcl|Aclame:pro 227 VEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE------AAPGALWELPPGVDI 297 (456) Q Consensus 227 ~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~ 297 (456) ++.+...++...... .....+|.+ |.-++..... ..++..+.+. ..+. ...+++..++.+.++ T Consensus 191 i~~~~~~i~~~~~~~---~~~~~~f~ng~~p~gil~~~~~---l~~e~~~~~~--~~~~~~~~g~~nag~~~vl~~g~~~ 262 (437) T protein:vir:10 191 IQYAREVLGNSTAAN---KTSASVFRNGLRPSGVLSTDQI---LQKEKRAEIR--TDLAEQFGGAMQAGKTMVLEAGMKY 262 (437) T ss_pred HHHHHHHHHHHHHHH---HHHHHHHhccCCccEEEEcCCC---CCHHHHHHHH--HHHHHHhcCccccCcceeccCCceE Confidence 555444433333222 222233333 4333432111 1122222221 1111 112456778888888 Q ss_pred eeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 298 WESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE 375 (456) Q Consensus 298 ~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~ 375 (456) .++..... ..|++..+....+|+.+-++|++.++.... +..+..++.....+...|-. -+-..+...+...+-.. T Consensus 263 ~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~tl~---P~~~~ie~~l~~kll~~ 339 (437) T protein:vir:10 263 QAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQTLGFLTFTLR---PWLTRIEQAARRSLLRP 339 (437) T ss_pred EeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHH---HHHHHHHHHHHhhccCc Confidence 77754332 347888888889999999999999974322 12223333322222222111 01111112211111011 Q ss_pred CCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccH-HHH-HHHHHHHHHHHHHhhcc------- Q lcl|Aclame:pro 376 GESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ-IKQ-DDLDRAREQITLFAGNP------- 446 (456) Q Consensus 376 g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~-~~~-~e~~~~~e~~~~~~~~~------- 446 (456) +.....-+++.+......|..+.++++.++..+|+++...+++.+|+.|-+ -.+ +-....--.++...... T Consensus 340 ~e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (437) T protein:vir:10 340 GERDQFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAAVLTVQSALLPIDKLGEHTTATAAQD 419 (437) T ss_pred cccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcceEeecCcccchhhccCcCCCcchhc Confidence 211222344555556677889999999999999999999999999886532 111 00000000011111111 Q ss_pred ------cccccCCCCC Q lcl|Aclame:pro 447 ------VQRPQEDGSR 456 (456) Q Consensus 447 ------~~~~~~~Gs~ 456 (456) .+.....|+. T Consensus 420 ~~~~~~~~~~~~~~~~ 435 (437) T protein:vir:10 420 ALKAWLYQEEKTRATQ 435 (437) T ss_pred cccccCCCCCCCCccc Confidence 1111111111 No 153 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=99.00 E-value=2e-09 Score=68.30 Aligned_cols=335 Identities=9% Similarity=0.006 Sum_probs=150.4 Q ss_pred hhcCCcccCCCccccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeC Q lcl|Aclame:pro 71 IIPNGITVGGSADSDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDP 144 (456) Q Consensus 71 l~g~~~~~~~~~d~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~ 144 (456) +..-|+.+... ++.....+.+++.. | .-..+...++...+.+|.||+++-.+..|.+ .+.+++|..+.++.++ T Consensus 1 ia~lp~~~~~~-~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~~~~~ 79 (348) T protein:vir:93 1 MASLPLKMYED-YKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIEN 79 (348) T ss_pred CcccceEeEec-CcCcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEEEEeC Confidence 22223332111 11111223333321 2 2234456677788899999999999999987 5888888888887765 Q ss_pred CCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCC Q lcl|Aclame:pro 145 LQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGM 224 (456) Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~ 224 (456) ... .+ +|+........ ..|.++.+.++... ++ ..--.|. T Consensus 80 ~~~-~~-----~y~~~~~~g~~-~~~~~~eiih~r~~-------------------------------~~---~~~~~G~ 118 (348) T protein:vir:93 80 QSR-EL-----YYSIHAATGNK-LIVHNMDMLHFKHI-------------------------------VA---SNMVQGI 118 (348) T ss_pred CCc-EE-----EEEEEcCCCeE-EEEccccEEEecCC-------------------------------CC---CCceeec Confidence 432 11 11111111111 12333344333210 00 0001256 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhh-hhhhhhhhccceeecCCCcceeecccc Q lcl|Aclame:pro 225 GEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAID-YASIFEAAPGALWELPPGVDIWESQAN 303 (456) Q Consensus 225 s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (456) |.++.+...++..+.+... ....+..+-.++.- .+....++.-+.+. .........+++..++.+.++.++..+ T Consensus 119 s~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~i~~--~~~~l~~e~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~ 193 (348) T protein:vir:93 119 SPIDVLKNTTDFDNAVRTF---NLTEMQKPDSFMLK--YGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKK 193 (348) T ss_pred cHHHHHHHHHHHHHHHHHH---HHHhcCCCceeEEe--cCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCC Confidence 6555544444433222111 11122222111110 00111111111111 111112344567777888888777643 Q ss_pred chH-HHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccc Q lcl|Aclame:pro 304 DFT-PMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCE-DRLSIAKIGLEAILVKALQIEGESVED 381 (456) Q Consensus 304 ~~~-~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~-~~~~~f~~~l~~~~~l~~~~~g~~~~~ 381 (456) ..+ .|++..+....+||+.-++|+..++... +.+...++.....+...|- -+.+.+...|.+-+ +.-.+..... T Consensus 194 ~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~-~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l---~~~~~~~~g~ 269 (348) T protein:vir:93 194 YVSEDIVASENLTRERVANVFQLPSIFLNARS-NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL---LTKTDREKNR 269 (348) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCcccccCcc Confidence 332 4777778888999999999999997532 2222222222222222221 11111111111111 0001111122 Q ss_pred cceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHH-HHHHHHHHHHHHhhccc-ccccCCCCC Q lcl|Aclame:pro 382 TVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD-DLDRAREQITLFAGNPV-QRPQEDGSR 456 (456) Q Consensus 382 ~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~-e~~~~~e~~~~~~~~~~-~~~~~~Gs~ 456 (456) .+++.+....-.+..+.++++.+++++|+++.-.+++.+|+.|-+--+. -....--.++...+... ...+++++. T Consensus 270 ~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~gg~~n~~ 346 (348) T protein:vir:93 270 YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVN 346 (348) T ss_pred eEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcCeEeecccccccccchhhcccccCCCCCcC Confidence 2444445555678899999999999999999999999999876421100 00000000001111110 011111111 No 154 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=98.97 E-value=8.7e-09 Score=64.77 Aligned_cols=394 Identities=10% Similarity=0.032 Sum_probs=169.0 Q ss_pred CCCCCH----HHHHHH-----------HHHHHHHH---HHH--HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChH Q lcl|Aclame:pro 1 MTASTP----AEWLPV-----------LTKRIDDG---MSR--VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWG 60 (456) Q Consensus 1 ~~~~t~----~~~~~~-----------l~~~~~~~---~~~--~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~ 60 (456) |-=-+| .+|-.+ |....+.+ .+. ...+-....|-.... ...+... .. +.+.=. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~a----l~~~~V 73 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTK--LRQYKDI-EA----IRHSDI 73 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCccc--ccccchh-hh----hccHHH Confidence 221111 111000 00000000 000 000001111100000 0001000 00 111112 Q ss_pred HHHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHh--cCh---hHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEc Q lcl|Aclame:pro 61 LMVRDSVADRIIPNGITVGGSADSDLALRARRIWRD--NRM---DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADS 134 (456) Q Consensus 61 ~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~--n~~---~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~ 134 (456) -.+|+..++-+..-|+.+...........+..++.. |.. ..+...+....+.+|.||+++-.+..|++ .+..++ T Consensus 74 ~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~ 153 (441) T protein:vir:94 74 FTAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRK 153 (441) T ss_pred HHHHHHHHHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEc Confidence 335667766666667776432221122223344432 322 34556778888999999999999989987 488999 Q ss_pred cceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeE Q lcl|Aclame:pro 135 PETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPP 214 (456) Q Consensus 135 p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 214 (456) |..+.+..|+.. .+....... +..+ ......|.++.+.|+... . T Consensus 154 ~~~v~v~~d~~g--~~~~~~~~~-~~~~-~~~~~~~~~~dvih~k~~---------------------------~----- 197 (441) T protein:vir:94 154 TSEIELKSDARG--RLYYFHQRI-DSNG-NNIERNVKFEDMLDIKFY---------------------------S----- 197 (441) T ss_pred CceeEEEECCCc--cEEEEEEEe-ccCC-ceeEEEEccccEEEeccC---------------------------C----- Confidence 999998876432 221111110 1111 111122333344333100 0 Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccch-hhhhh--hhhhh--hhcc Q lcl|Aclame:pro 215 VVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENG-NAIDY--ASIFE--AAPG 286 (456) Q Consensus 215 v~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g-~~~~~--~~~~~--~~~~ 286 (456) ...-.|.|.++.....++...... .....+|.. |..++.- . ....++.. ..+.. ..... ...+ T Consensus 198 ---~dg~~G~spl~~~~~~i~~~~~~~---~~~~~~f~ng~~p~gil~~-~--~~~~~~e~~e~~r~~~~~~~~G~~nag 268 (441) T protein:vir:94 198 ---LDGINGLSLLDTLSRTIESDNNGK---DFLNNFLRNGTHAGGILKM-K--GVLDNKKARDRAREEFHKSFSGTKQAG 268 (441) T ss_pred ---CCCccccCHHHHHHHHHHHHHHHH---HHHHHHHhccCCCcEEEEc-C--CCCCCHHHHHHHHHHHHHHhcCccccC Confidence 000125665554444333222111 111223322 3333321 1 01111111 11111 01111 1234 Q ss_pred ceeecCCCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 287 ALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLE 365 (456) Q Consensus 287 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~ 365 (456) ++..++.+.++..+..... ..|++..+....+|+..-++|++.++...++.|.+.....+. .-..-..+.+...+. T Consensus 269 ~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~~~---~tl~P~~~~ie~eln 345 (441) T protein:vir:94 269 KVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDYL---STLKPYITCVCAELN 345 (441) T ss_pred cceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHH---HHHHHHHHHHHHHHh Confidence 5677888888877653322 247788888889999999999999986554444332221111 111111122222222 Q ss_pred HHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-----H-----HHHHH Q lcl|Aclame:pro 366 AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-----D-----DLDRA 435 (456) Q Consensus 366 ~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-----~-----e~~~~ 435 (456) +. +........+++.+....-.|..+.++++.+++++|+++...+++.+|+.|-+--. + ..+.. T Consensus 346 ~k------l~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~ 419 (441) T protein:vir:94 346 FK------FNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELV 419 (441) T ss_pred hh------ccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccc Confidence 11 11111223344444455667888999999999999999999999999987632111 0 01100 Q ss_pred HHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 436 REQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 436 ~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ++...-.....+.+..+|=+ T Consensus 420 -~~~~~~~~~~~~~~~kgGe~ 439 (441) T protein:vir:94 420 -DEYQMNKSRATDKKLKGGEE 439 (441) T ss_pred -cccccccccccccccCCCCC Confidence 00000000000111122222 No 155 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=98.97 E-value=8.7e-09 Score=64.77 Aligned_cols=394 Identities=10% Similarity=0.032 Sum_probs=169.0 Q ss_pred CCCCCH----HHHHHH-----------HHHHHHHH---HHH--HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChH Q lcl|Aclame:pro 1 MTASTP----AEWLPV-----------LTKRIDDG---MSR--VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWG 60 (456) Q Consensus 1 ~~~~t~----~~~~~~-----------l~~~~~~~---~~~--~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~ 60 (456) |-=-+| .+|-.+ |....+.+ .+. ...+-....|-.... ...+... .. +.+.=. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~a----l~~~~V 73 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTK--LRQYKDI-EA----IRHSDI 73 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCccc--ccccchh-hh----hccHHH Confidence 221111 111000 00000000 000 000001111100000 0001000 00 111112 Q ss_pred HHHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHh--cCh---hHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEc Q lcl|Aclame:pro 61 LMVRDSVADRIIPNGITVGGSADSDLALRARRIWRD--NRM---DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADS 134 (456) Q Consensus 61 ~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~--n~~---~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~ 134 (456) -.+|+..++-+..-|+.+...........+..++.. |.. ..+...+....+.+|.||+++-.+..|++ .+..++ T Consensus 74 ~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~ 153 (441) T protein:vir:79 74 FTAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRK 153 (441) T ss_pred HHHHHHHHHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEc Confidence 335667766666667776432221122223344432 322 34556778888999999999999989987 488999 Q ss_pred cceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeE Q lcl|Aclame:pro 135 PETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPP 214 (456) Q Consensus 135 p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 214 (456) |..+.+..|+.. .+....... +..+ ......|.++.+.|+... . T Consensus 154 ~~~v~v~~d~~g--~~~~~~~~~-~~~~-~~~~~~~~~~dvih~k~~---------------------------~----- 197 (441) T protein:vir:79 154 TSEIELKSDARG--RLYYFHQRI-DSNG-NNIERNVKFEDMLDIKFY---------------------------S----- 197 (441) T ss_pred CceeEEEECCCc--cEEEEEEEe-ccCC-ceeEEEEccccEEEeccC---------------------------C----- Confidence 999998876432 221111110 1111 111122333344333100 0 Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccch-hhhhh--hhhhh--hhcc Q lcl|Aclame:pro 215 VVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENG-NAIDY--ASIFE--AAPG 286 (456) Q Consensus 215 v~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g-~~~~~--~~~~~--~~~~ 286 (456) ...-.|.|.++.....++...... .....+|.. |..++.- . ....++.. ..+.. ..... ...+ T Consensus 198 ---~dg~~G~spl~~~~~~i~~~~~~~---~~~~~~f~ng~~p~gil~~-~--~~~~~~e~~e~~r~~~~~~~~G~~nag 268 (441) T protein:vir:79 198 ---LDGINGLSLLDTLSRTIESDNNGK---DFLNNFLRNGTHAGGILKM-K--GVLDNKKARDRAREEFHKSFSGTKQAG 268 (441) T ss_pred ---CCCccccCHHHHHHHHHHHHHHHH---HHHHHHHhccCCCcEEEEc-C--CCCCCHHHHHHHHHHHHHHhcCccccC Confidence 000125665554444333222111 111223322 3333321 1 01111111 11111 01111 1234 Q ss_pred ceeecCCCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 287 ALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLE 365 (456) Q Consensus 287 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~ 365 (456) ++..++.+.++..+..... ..|++..+....+|+..-++|++.++...++.|.+.....+. .-..-..+.+...+. T Consensus 269 ~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~~~---~tl~P~~~~ie~eln 345 (441) T protein:vir:79 269 KVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDYL---STLKPYITCVCAELN 345 (441) T ss_pred cceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHH---HHHHHHHHHHHHHHh Confidence 5677888888877653322 247788888889999999999999986554444332221111 111111122222222 Q ss_pred HHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-----H-----HHHHH Q lcl|Aclame:pro 366 AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-----D-----DLDRA 435 (456) Q Consensus 366 ~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-----~-----e~~~~ 435 (456) +. +........+++.+....-.|..+.++++.+++++|+++...+++.+|+.|-+--. + ..+.. T Consensus 346 ~k------l~~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~~~~~ 419 (441) T protein:vir:79 346 FK------FNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELV 419 (441) T ss_pred hh------ccccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccc Confidence 11 11111223344444455667888999999999999999999999999987632111 0 01100 Q ss_pred HHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 436 REQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 436 ~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ++...-.....+.+..+|=+ T Consensus 420 -~~~~~~~~~~~~~~~kgGe~ 439 (441) T protein:vir:79 420 -DEYQMNKSRATDKKLKGGEE 439 (441) T ss_pred -cccccccccccccccCCCCC Confidence 00000000000111122222 No 156 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=98.95 E-value=5.2e-09 Score=66.00 Aligned_cols=374 Identities=10% Similarity=-0.003 Sum_probs=163.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccc---ccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP---ELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD 83 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~---~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d 83 (456) +-|.+.+...-........-......+ ++. ..+..+.. ..-..+.-...+|+..++-+..-|+.+.... T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~-----~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~~- 72 (386) T protein:vir:48 1 MPIFNITNLATESPPISQGGFFDITDP--DFLSTLNGSEWVSA-----ESALRNSDLFSIINQLSNDLATVKLTASRKQ- 72 (386) T ss_pred Ccccccccccccccccccccccccccc--hhcccccCCceech-----hhhhcchHHHHHHHHHHHhhccCceeeccch- Confidence 111111100000000000000000000 000 00000000 0001122334677777777777788764321 Q ss_pred ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEE-EecC Q lcl|Aclame:pro 84 SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWW-RDLD 161 (456) Q Consensus 84 ~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~-~~~~ 161 (456) ....+.+-........+...++.+.+.+|.||+.+-.+..|.+ .+.+++|..+.+..++... .+ .|. ...+ T Consensus 73 --~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~-~~----~y~~~~~~ 145 (386) T protein:vir:48 73 --LQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKD-GI----YYNITFDD 145 (386) T ss_pred --hHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCc-eE----EEEEEecC Confidence 1111111111113345667788899999999999989988876 5788899998887664322 11 111 1111 Q ss_pred CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 162 AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAE 241 (456) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~ 241 (456) ........+.++.+.|+... +..+ .-.|.|.++.....++....+. T Consensus 146 ~~~~~~~~~~~~evih~~~~--------------------------~~~~--------~~~G~s~i~~~~~~i~~~~~~~ 191 (386) T protein:vir:48 146 PRIPPKQHVPQGDVLHFKLL--------------------------SVDG--------GLTSVSPLMALSRELNIQKASD 191 (386) T ss_pred ccccceeEecCccEEEecCC--------------------------CCCC--------ceeeccHHHHHHHHHHHHHHHH Confidence 11111122333444433210 0000 0126666655444443333222 Q ss_pred HHHHHHHHHHhhhHHhhcCCCccccccccchhhhh-hhhhhhhhccceeecCCCcceeeccccch-HHHHHHHHHHHHHH Q lcl|Aclame:pro 242 LQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAID-YASIFEAAPGALWELPPGVDIWESQANDF-TPMLSAIKEHIRQL 319 (456) Q Consensus 242 s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i 319 (456) .-......-.+.|..+++-... ..++....+. .........++++.++.+.++..+...+. ..|++..+....+| T Consensus 192 ~~~~~~~~ng~~~~~ii~~~~~---~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~I 268 (386) T protein:vir:48 192 KLTLNSLKNALNANGILKIKGG---GLLDFKTKLSRSRQAMKQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQF 268 (386) T ss_pred HHHHHHHhccCCcceEEEeCCC---CCHHHHHHHHHHHHHhhcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHH Confidence 2211111222223333321111 1111111111 11112233456677888888877664332 24778888888999 Q ss_pred HhhcCCChhhhccccccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHH Q lcl|Aclame:pro 320 SSATKTPLPMLMPDSANQS--AEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGE 397 (456) Q Consensus 320 ~~~t~~p~~~~~~~~~n~S--g~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e 397 (456) ++.-++|+..++..+.+.+ ...+.+....|.-.+...+..+...|-. .++..+....-.+... T Consensus 269 a~~fgVPp~~lg~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~---------------~~~~~~~~~~~~d~~~ 333 (386) T protein:vir:48 269 AKVYGIPENVVGGQGDQQSSLEMSLDLYNKAVSRYLRPFLSELSQKLSC---------------DVDADILPAVDPTGSN 333 (386) T ss_pred HHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------hhhcchhhhhccChHH Confidence 9999999999975443332 2233333333333333333333322211 1111122222344456 Q ss_pred HHHHHHHHHhcCCCcHHHHHHhCCCCc---cHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 398 KYSAASLAKAAGESWASIRRNILNYNA---DQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 398 ~ad~~~kl~~~g~~s~~t~~~~~~~~~---~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .++.+.++..+|+++...+++.+|..+ .+..+. + .+...+.+.++.+|.- T Consensus 334 ~~~~~~~l~~~g~~t~nE~r~~lg~~~~~~~~~~~~------~---~~~~~~~~gGd~~~~~ 386 (386) T protein:vir:48 334 SVSRINSMVKSGTLAQNQGLYILQQAEILPKELPEG------E---NPNKTTLKGGEINGED 386 (386) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhhcCCCCCccchhh------c---CCCCCccCCCCCCCCC Confidence 677788889999999998988876543 222111 1 0111111111222222 No 157 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=98.95 E-value=3.3e-09 Score=67.06 Aligned_cols=381 Identities=10% Similarity=0.012 Sum_probs=163.9 Q ss_pred HHHHHHHHHHHH-------HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC-Ccc Q lcl|Aclame:pro 12 VLTKRIDDGMSR-------VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG-SAD 83 (456) Q Consensus 12 ~l~~~~~~~~~~-------~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~-~~d 83 (456) .++..+-...++ +..+-....+... ..+..+.++. -+.+.-...+|+..++-+..-|+.+-. ..+ T Consensus 1 m~~~~~~~~~~~~~s~~~~w~~~~~~~~~~~~--~~g~~vt~~~-----al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~ 73 (421) T protein:vir:10 1 MFIPQMFEGKKRSVSGGGFWEAMLGGVRSSHS--KAGVMITPET-----ALALSAVRACVTLLAESVAQLPVELYRRDKN 73 (421) T ss_pred CCCcchhcccccccCcchhhHHHhhhhccCcc--cCCceechHH-----hhccHHHHHHHHHHHHhhccCceEEEEEcCC Confidence 111111111100 0011111111000 0111111110 012233456777777777777876521 111 Q ss_pred c--c--HHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEE Q lcl|Aclame:pro 84 S--D--LALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAA 153 (456) Q Consensus 84 ~--~--~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) . + ....+..++.. | .-..+...++.+.+.+|.||+++-.+.+|.+ .+.+++|..+.+..++. + T Consensus 74 g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~-g------ 146 (421) T protein:vir:10 74 GGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPD-G------ 146 (421) T ss_pred CceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCC-c------ Confidence 1 1 11224444432 3 2344557778889999999999999999987 47888888888766532 1 Q ss_pred EEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHH Q lcl|Aclame:pro 154 MRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDI 233 (456) Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~l 233 (456) ..+|....... .+..+.++++.. . ..+.-.|.|-++..... T Consensus 147 ~~~y~~~~~g~----~~~~~eiih~~~-------------------------------~----~~d~~~G~spi~~~~~~ 187 (421) T protein:vir:10 147 MPYYEIPEIGE----TLPMRMMHHVKV-------------------------------F----SLDGYIGSSPIQTNADV 187 (421) T ss_pred eEEEEEcCCCc----EEchhhEEEecC-------------------------------c----CCCCcccccHHHHHHHH Confidence 11222111111 111222222110 0 00111256655544444 Q ss_pred HHHHHHHHHHHHHHHHHHhh---hHHhhcCCCcc-ccccccchhhhhhh--hhhh--hhccceeecCCCcceeeccccch Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAF---RQRALKSTEHG-LPNVDENGNAIDYA--SIFE--AAPGALWELPPGVDIWESQANDF 305 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~-~~~~d~~g~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 305 (456) ++...... .....+|.. |..++.-.... ....++.-+.+... .... ...+++..++.+.++.++..... T Consensus 188 i~~~~~~~---~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~ 264 (421) T protein:vir:10 188 LGLNLAVE---EHASAVFRRGATMSGVIERPKEAPAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNE 264 (421) T ss_pred HHHHHHHH---HHHHHHHhcCCCccEEEEecCccCccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChh Confidence 43322221 122223332 33333211100 00011111111110 0011 12345677788888877764332 Q ss_pred -HHHHHHHHHHHHHHHhhcCCChhhhcccc-ccchH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 306 -TPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQSA-E--GAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVE 380 (456) Q Consensus 306 -~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~Sg-~--Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~ 380 (456) ..|++..+....+|+..-++|+..++... ++-|. + .+.+....|.-.+.. +++.+...+-....... T Consensus 265 d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~tl~P~~~~--------ie~~ln~kL~~~~~~~~ 336 (421) T protein:vir:10 265 KAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATNNNIEHQGLQFVMYTLLAWLKR--------HEGALQRDLLLPSERRD 336 (421) T ss_pred HHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCccccHHHHHHHHHHHHHHHHHHH--------HHHHHhhhccCccccCC Confidence 24778888888999999999999886432 11111 1 122222222222221 21222111101111112 Q ss_pred ccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 381 DTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 381 ~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ..+++........|..+.++++.+++++|+++...+++.+|+.+-+--+ .-.-..--..........+.....|+. T Consensus 337 ~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~e 413 (421) T protein:vir:10 337 LYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGGDKYLTPLNMVDSAQIIPGDKKPTAQQMAE 413 (421) T ss_pred eEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccCCCCcccccCcc Confidence 2234444445567889999999999999999999999999987642111 000000000000000000000000110 No 158 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=98.95 E-value=7e-09 Score=65.29 Aligned_cols=384 Identities=11% Similarity=0.010 Sum_probs=172.8 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccc-- Q lcl|Aclame:pro 8 EWLPVLTKRIDDG-MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADS-- 84 (456) Q Consensus 8 ~~~~~l~~~~~~~-~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~-- 84 (456) -++..+.++.... ......+...+-+.... ..+..+..+ .-+.+.-...+|+..++-+..-|+.+....+. T Consensus 1 ~~f~~~f~r~~~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~-----~~l~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~ 74 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTTPAELAEAIGLSYDT-YTGKRISSQ-----RAMRLTAVYSCVRVLAESVGMLPCSLYKISGTLK 74 (413) T ss_pred CccchhhccCccCCccchHHHHHhhhcCccc-ccCceechh-----hhhccHHHHHHHHHHHHhhhhCceEEEEecCCcc Confidence 1222222221110 00111222222221110 111111111 01223345567888888777777764321111 Q ss_pred --cHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 85 --DLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 85 --~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) .....+..++.. | .-..+...++...+.+|.||+++..+ .|++ .+.+++|..+.+..+... .+. .. T Consensus 75 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~--~~~---y~ 148 (413) T protein:vir:48 75 TRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQW--QPV---YQ 148 (413) T ss_pred eeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCCc--eEE---EE Confidence 111224444432 2 33456677888999999999998776 5665 478889998888776432 111 11 Q ss_pred EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHH Q lcl|Aclame:pro 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINR 236 (456) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~ 236 (456) +...++.. ..|.++.++++... .+....|.|-++.+...++. T Consensus 149 ~~~~~g~~---~~~~~~evih~~~~-----------------------------------~~d~~~G~s~i~~~~~~i~~ 190 (413) T protein:vir:48 149 VTFPDGSV---DVLTQDEIWHVRTL-----------------------------------TLDGLVGLNPIAYAREAISL 190 (413) T ss_pred EEecCceE---EEEccccEEEecCc-----------------------------------CCCCcccccHHHHHHHHHHH Confidence 11122211 12334444443210 00111366665555544443 Q ss_pred HHHHHHHHHHHHHHHh---hhHHhhcCCCccccccccchhhhhhh--hhhh--hhccceeecCCCcceeeccccch-HHH Q lcl|Aclame:pro 237 INRAELQLLSTMAIQA---FRQRALKSTEHGLPNVDENGNAIDYA--SIFE--AAPGALWELPPGVDIWESQANDF-TPM 308 (456) Q Consensus 237 ~~~~~s~~~~~~~~~~---~~~~~i~G~~~~~~~~d~~g~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (456) ...... ....+|. .|.-+++.... ..++.-+.+... .... ...++++.++.+.++..+..... ..| T Consensus 191 ~~~~~~---~~~~~~~ng~~p~gil~~~~~---~~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~ 264 (413) T protein:vir:48 191 AAATEE---HGARLFGNGAVTSGVLRTEQK---LTPDAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQF 264 (413) T ss_pred HHHHHH---HHHHHHhccCCcceEEEeCCC---CCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEeccCChhHHHH Confidence 332221 2222332 23333332111 111111111110 0111 22345677888888877653322 236 Q ss_pred HHHHHHHHHHHHhhcCCChhhhcccc-cc-chHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccce Q lcl|Aclame:pro 309 LSAIKEHIRQLSSATKTPLPMLMPDS-AN-QSAEGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVD 384 (456) Q Consensus 309 ~~~~~~~~~~i~~~t~~p~~~~~~~~-~n-~Sg~Al--~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~ 384 (456) ++..+....+|+.+-++|++.++... ++ .+.+.. .+....+.-.++..+ ..|.+- ++ ........-++ T Consensus 265 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~~i~P~~~~ie----~~l~~~---L~-~~~~~~~~~~~ 336 (413) T protein:vir:48 265 LETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLTRIE----QRINTG---LV-RESKQGKFYAK 336 (413) T ss_pred HHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHHHHHHHHHHHHHHHHHHHHH----HHHHhh---cc-CccccCCeEEE Confidence 78888888999999999999997532 22 122222 222222222222211 111111 00 01111122344 Q ss_pred EEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHH-HHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 385 VSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD-DLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 385 v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~-e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +.+....-.|..+.++++.+++++|+++...+++++|+.|-+--+. -....-..... +....+.+.++|.. T Consensus 337 fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~-~~~~~~~~~~~~~~ 408 (413) T protein:vir:48 337 FNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTSPS-AGDDNGKKKESGDA 408 (413) T ss_pred EechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeecccccccccc-ccccCCCCCCCCCc Confidence 4455556678899999999999999999999999999876422110 00000000011 11111112222211 No 159 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=98.94 E-value=1e-08 Score=64.39 Aligned_cols=393 Identities=13% Similarity=0.046 Sum_probs=171.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHhhcc-Ccc----cccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVR---LLARYSNGD-APL----PELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~---~~~~YY~g~-~~i----~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |.++--+-++.++...+....+... .......+. ..+ -..+..+..+ .-+.+.=...+|+..++-+. T Consensus 1 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-----~a~~~~aV~~~v~~Ia~~ia 75 (432) T protein:vir:97 1 MPDEKKLGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNAD-----AIMRLDAVAACVKLVSQAVA 75 (432) T ss_pred CCCcccCchhhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchH-----hhhcchHHHHHHHHHHHhhc Confidence 4444444444444333322111000 000000000 000 0011111110 00112233456777777776 Q ss_pred cCCcccCC-Ccc---ccHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEe Q lcl|Aclame:pro 73 PNGITVGG-SAD---SDLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSV 142 (456) Q Consensus 73 g~~~~~~~-~~d---~~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~ 142 (456) .-|+.+-. ..| ......+..++.. |. -..+...+....+.+|.||+++..+ +|++ .+..++|..+.+.. T Consensus 76 ~lp~~~y~~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~p~~v~v~~ 154 (432) T protein:vir:97 76 AMPLMMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITT 154 (432) T ss_pred cCceEEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEE Confidence 66776421 111 1112234455432 32 2345567888899999999988776 4665 47889999988887 Q ss_pred eCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCC Q lcl|Aclame:pro 143 DPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPD 222 (456) Q Consensus 143 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~ 222 (456) ++... +. . .+...++ .. ..+..+.+.++... + +..-. T Consensus 155 ~~~g~--~~--y-~~~~~~g--~~-~~~~~~~iih~r~~--------------------------------~---~dg~~ 191 (432) T protein:vir:97 155 DTKGN--TA--Y-RYRRTDG--QM-IDIPRQQIWKIMGY--------------------------------S---LDGEN 191 (432) T ss_pred cCCCc--EE--E-EEEecCc--eE-EEEccccEEEecCc--------------------------------C---CCCcc Confidence 64321 11 0 1111121 11 12333333332100 0 00012 Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh--hhccceeecCCCcce Q lcl|Aclame:pro 223 GMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE--AAPGALWELPPGVDI 297 (456) Q Consensus 223 ~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~--~~~~~~~~~~~~~~~ 297 (456) |.|-++.....+ ...++-......+|.+ |.-++.-. . ...++.-+.+. ..+. ...+++..++.+.++ T Consensus 192 G~spi~~~~~~i---~~~~a~~~~~~~~f~ng~~~~gil~~~-~--~l~~e~~~~~~--~~~~~~~nag~~~vl~~g~~~ 263 (432) T protein:vir:97 192 GLSAIRYGAQIF---GTAIAAEAQAARAFRNGQLQSVYYQID-R--FLTDDQYDSFS--KKVSGSVEAGRAPLLEGGMDV 263 (432) T ss_pred cccHHHHHHHHH---HHHHHHHHHHHHHHhccCCcceeEecC-C--CCCHHHHHHHH--HHHhhhhcCCCceecCCCceE Confidence 555554433333 2222222222233332 22222211 0 11111111111 1111 233567778888888 Q ss_pred eeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccc--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 298 WESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ--SAEGAHNIEKGFLFKCED-RLSIAKIGLEAILVKALQ 373 (456) Q Consensus 298 ~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~--Sg~Al~~~~~~l~~k~~~-~~~~f~~~l~~~~~l~~~ 373 (456) .++..... ..+++..+....+||..-++|++.++....+. .+..++.....+...|-. +.+.+...+.+ . T Consensus 264 ~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~~f~~~tl~P~~~~ie~~ln~------k 337 (432) T protein:vir:97 264 KSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIAL------N 337 (432) T ss_pred EEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh------h Confidence 77654322 34677788888999999999999997532211 123333332222222111 11112222221 1 Q ss_pred hcCCCccccceEEe--cCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-H-HHHHHHHHHHHHHhhccccc Q lcl|Aclame:pro 374 IEGESVEDTVDVSF--ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-Q-DDLDRAREQITLFAGNPVQR 449 (456) Q Consensus 374 ~~g~~~~~~i~v~f--~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~-~e~~~~~e~~~~~~~~~~~~ 449 (456) +....+.....+.| ......|..+.++++.+++++|+++...+++.+|+.+-+-. . +-....--.++..+....+. T Consensus 338 Ll~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~~~~~~~~~~~~pl~~~~~~~~~~ 417 (432) T protein:vir:97 338 LLTPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVLTVQSAMVPLDSIGLQASPE 417 (432) T ss_pred ccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceEeecccccchhhhcccCCCC Confidence 11222222333444 44556788999999999999999999999999998653211 1 00000000011111111111 Q ss_pred c--------cCCCCC Q lcl|Aclame:pro 450 P--------QEDGSR 456 (456) Q Consensus 450 ~--------~~~Gs~ 456 (456) | +...|| T Consensus 418 ~~~~~~~~~~~~~~~ 432 (432) T protein:vir:97 418 PASGLGNQQQDKVSK 432 (432) T ss_pred CCCCCCCcccccccC Confidence 1 112222 No 160 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=98.92 E-value=1.4e-08 Score=63.70 Aligned_cols=370 Identities=10% Similarity=0.020 Sum_probs=168.3 Q ss_pred HHHHHHhhccCc---------------cc-ccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC---CCcccc Q lcl|Aclame:pro 25 RLLARYSNGDAP---------------LP-ELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG---GSADSD 85 (456) Q Consensus 25 ~~~~~YY~g~~~---------------i~-~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~---~~~d~~ 85 (456) -.+.++++++.. .. ..+..+.. ...+...-...+|+..+.-+.+-|+.+- .+...+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~-----~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g~~~ 75 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQVVPGGMRSSSSQAGVIITP-----ETALALSAVRACVTLLAESVAQLPCVLYRRTENGGRE 75 (419) T ss_pred CcchhhhccCCccccccccccccccccccccCCceech-----HHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCcee Confidence 111222222210 00 00011111 0112223356778888887777777651 111111 Q ss_pred --HHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEE Q lcl|Aclame:pro 86 --LALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWW 157 (456) Q Consensus 86 --~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 157 (456) ....+.+++.. | ....+...+..+.+.+|.||+++-.+.+|.+ .+.+++|..+.+..++. + ..+| T Consensus 76 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~-g------~~~y 148 (419) T protein:vir:57 76 IAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPD-G------MPYY 148 (419) T ss_pred ccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCC-c------eEEE Confidence 12234455432 2 2345567788899999999999999999986 57888898888765432 1 1122 Q ss_pred EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 158 RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRI 237 (456) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~ 237 (456) ..... . ..+..+.++++.. ++ .....|.|.++.+...++.. T Consensus 149 ~~~~~-~---~~~~~~~vih~r~--------------------------------~~---~d~~~G~s~i~~~~~~i~~~ 189 (419) T protein:vir:57 149 DIPSI-G---EILPMRMVHHIKS--------------------------------FS---LDGYIGTSPIQTNPDVLGLG 189 (419) T ss_pred EEcCC-c---eEEchhhEEEecC--------------------------------cC---CCCcccccHHHHHHHHHHHH Confidence 21111 1 1122222322210 00 01113667666655544443 Q ss_pred HHHHHHHHHHHHHHhh---hHHhhcCCCc-cccccccchhhhhhhhhhh------hhccceeecCCCcceeeccccch-H Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAF---RQRALKSTEH-GLPNVDENGNAIDYASIFE------AAPGALWELPPGVDIWESQANDF-T 306 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~---~~~~i~G~~~-~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~ 306 (456) ..+. .....+|.+ |..++.-... .....++.-+.+ ...+. ...+++..++.+.++..+...+. . T Consensus 190 ~~~~---~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~--~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~ 264 (419) T protein:vir:57 190 IAVE---QHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAI--LAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKA 264 (419) T ss_pred HHHH---HHHHHHHHccCCccEEEEecCcCCcccCHHHHHHH--HHHHHHHhccccccccceecCCCceEEEcCCChhhH Confidence 3222 122233333 3223321110 000011111111 11111 12345677788888877654322 2 Q ss_pred HHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ccccce Q lcl|Aclame:pro 307 PMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES--VEDTVD 384 (456) Q Consensus 307 ~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~--~~~~i~ 384 (456) .|++..+....+|++.-++|+..++.... .+...++.....+...|- .-+-..|.+.+.. .+.... ...-++ T Consensus 265 q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~t~sn~e~~~~~f~~~~l---~P~~~~ie~~l~~--~ll~~~~~~~~~i~ 338 (419) T protein:vir:57 265 QLLQSRQYTVNEVCRLYKVPPHMIQDLQK-STNNNIEHQGLQYVIYTM---LAILKRHESAMMR--DLLLPSERRDFYIE 338 (419) T ss_pred HHHHHHHHHHHHHHHHhCCCHHHhCCCCC-CccccHHHHHHHHHHHHH---HHHHHHHHHHHHh--hccCccccCCeEEE Confidence 47788888889999999999999974321 111112211111111110 0011111111111 011111 122344 Q ss_pred EEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHH---HHHHHHHH-hhcccccccCCCCC Q lcl|Aclame:pro 385 VSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDR---AREQITLF-AGNPVQRPQEDGSR 456 (456) Q Consensus 385 v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~---~~e~~~~~-~~~~~~~~~~~Gs~ 456 (456) +.+......|..++++++.+++++|+++...+++.+|+.|-+--+ .-.-. ..+..... ...+.+.++.++.- T Consensus 339 fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (419) T protein:vir:57 339 FNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDKYLTPLNMVDSKALTGIGKATPQQLKDIEAIL 415 (419) T ss_pred EechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccccccccccccccCCCcccCcchhhhh Confidence 444555677899999999999999999999999999987642211 10000 00000000 01111222211111 No 161 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=98.92 E-value=9.8e-09 Score=64.49 Aligned_cols=386 Identities=15% Similarity=0.078 Sum_probs=169.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHhhccCcccccCcccchhhhhhhhh-hcCChHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVR----LLARYSNGDAPLPELTRNTSAAWRSFQRE-ARTNWGLMVRDSVADRIIPNG 75 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~----~~~~YY~g~~~i~~~~~~~~~~~~~~~~k-~~~n~~~~iVd~~~~~l~g~~ 75 (456) |+-+++--.++.+ +-+........ +....+...... ..+.-..........+ ........+|+..++-+..-| T Consensus 1 ~~~~~~~~~~~~m-~~F~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~cI~~ia~~ia~~~ 78 (413) T protein:vir:96 1 MPGVSEIRKDKNL-KFFNNKRSPTEESKAKDEIPKAPQVVM-TLPNFFKELISDGYTKLSDSPEVRMAVDCIADLVSNMT 78 (413) T ss_pred CCccchhhhhhcC-CccccCCCcchhhhhhccccccccccc-cchhhHhhhccchhHHHhhchHHHHHHHHHHHhhccCc Confidence 7666665433211 01101000000 000000000000 0000000000000111 124566788898888888878 Q ss_pred cccCC---CccccHHHHHHHHHH--hc---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCc-e-EEEEEccceEEEEeeCC Q lcl|Aclame:pro 76 ITVGG---SADSDLALRARRIWR--DN---RMDSVCKQWVKYGLDFGESYLTCWRRDDGT-A-TITADSPETMVVSVDPL 145 (456) Q Consensus 76 ~~~~~---~~d~~~~~~l~~~~~--~n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~-~-~i~~~~p~~~~~i~d~~ 145 (456) |.+-. +........+..++. -| .-..+...+..+.+.+|.||+++..+..|. + .+.+++|..+.+.+++. T Consensus 79 ~~~~~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~~ 158 (413) T protein:vir:96 79 IQLMQNGETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSDD 158 (413) T ss_pred eEEEEecCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcCC Confidence 86521 111112223444442 13 224566788889999999999999988774 3 57888998888776643 Q ss_pred CCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC-CCC Q lcl|Aclame:pro 146 QPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP-DGM 224 (456) Q Consensus 146 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~-~~~ 224 (456) . +. |....... .+.++++.|+... ..+ .+. .|. T Consensus 159 ~-------~~-y~~~~~~~----~~~~~evih~k~~------------------------------~~~----~~~~~G~ 192 (413) T protein:vir:96 159 D-------LD-YSITFDNK----EYDPSTLLHFVLN------------------------------PSI----ERPFIGT 192 (413) T ss_pred e-------EE-EEEeecCc----EEchhhEEEEecc------------------------------CCC----CCccccc Confidence 1 11 11111111 1122222222100 000 000 255 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhh------hccceeecCCCc-ce Q lcl|Aclame:pro 225 GEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA------APGALWELPPGV-DI 297 (456) Q Consensus 225 s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~------~~~~~~~~~~~~-~~ 297 (456) |-++.+...+........-......-.+.|..++..... ..++.-+.+ ...+.. ..++...++.+. ++ T Consensus 193 s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~---l~~e~~~~~--~~~~~~~~~g~~n~g~~~vl~~~~~~~ 267 (413) T protein:vir:96 193 GYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSD---SDELSDEEG--RENFEEMYLKRKEAGKPWIIPEGMVNV 267 (413) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCC---CCHHHHHHH--HHHHHHHhcCccccCceeeecCCcccc Confidence 655444433333322221111112222224333332111 111111111 111111 123344444443 33 Q ss_pred eecc---ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 298 WESQ---ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQI 374 (456) Q Consensus 298 ~~~~---~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~ 374 (456) .++. ..+ ..+++..+....+|+.+-++|+..+|...+ .+..+..+....+.-.+...+ ..+.+.+ T Consensus 268 ~~~~~~~~~d-~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~-~~~~~~~~~~~~l~P~~~~ie----~~ln~~l------ 335 (413) T protein:vir:96 268 QQIKPLTLND-LAINDAVTLDKKTVAGIFGVPAFLLGVGTY-NKDEFNNFINTKIMSIAQVIQ----QTYNKLI------ 335 (413) T ss_pred cccccCChhH-HHHHHHHHHHHHHHHHHhCCCHHHcCCCcc-hHHHHHHHHHHHHHHHHHHHH----HHHHHhh------ Confidence 3332 223 346777888889999999999999975322 233333333333222222222 2222111 Q ss_pred cCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHH-HHHHHHHHHHHHhhcccccccCC Q lcl|Aclame:pro 375 EGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD-DLDRAREQITLFAGNPVQRPQED 453 (456) Q Consensus 375 ~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~-e~~~~~e~~~~~~~~~~~~~~~~ 453 (456) .. ....+++.+......+..+.++++.+++.+|+++.-.+++.+|+.|.+-.+. -....-..++.. +.....+++| T Consensus 336 l~--~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~-~~~~~~~~~d 412 (413) T protein:vir:96 336 VE--EDMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPDAEMDDLLVLENYLQQKDL-VNQKKLIQDE 412 (413) T ss_pred CC--CCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccchhhc-ccccCCCCCC Confidence 11 2233455555666778899999999999999999999999999987532110 000000000000 0111111122 Q ss_pred C Q lcl|Aclame:pro 454 G 454 (456) Q Consensus 454 G 454 (456) - T Consensus 413 t 413 (413) T protein:vir:96 413 T 413 (413) T ss_pred C Confidence 2 No 162 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=98.89 E-value=1.6e-08 Score=63.25 Aligned_cols=392 Identities=13% Similarity=0.062 Sum_probs=179.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-cc-----Ccccchhhh--hhh--hhhcCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP-EL-----TRNTSAAWR--SFQ--REARTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~-~~-----~~~~~~~~~--~~~--~k~~~n~~~~iVd~~~~~ 70 (456) |- .|. +- -.+..+..-+.+++..+.|..... .. +........ ... .-+.+.-...+|+..++- T Consensus 1 ~~--~~~----~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~ 73 (424) T protein:vir:18 1 ME--EPK----YT-IDLRTNNGWWARLQSWFVGGRLVTPNQGSQTGPVSAHGHLGDSSINDERILQISTVWRCVSLISTL 73 (424) T ss_pred CC--CCc----ce-EeecCCCchHHHHHhhhcccccccccccccccccccccccccccccHHHhhccHHHHHHHHHHHHh Confidence 11 000 00 001112223344444444322110 00 000000000 000 011222345577888887 Q ss_pred hhcCCcccCC-Cccc-----cHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceE Q lcl|Aclame:pro 71 IIPNGITVGG-SADS-----DLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETM 138 (456) Q Consensus 71 l~g~~~~~~~-~~d~-----~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~ 138 (456) +.+-|+.+-. ..+. .....+..++.. | .-..+...+...++.+|.||+++-.+.+|++ .+.+++|..+ T Consensus 74 iA~lp~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~V 153 (424) T protein:vir:18 74 TACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANM 153 (424) T ss_pred hccCceEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcce Confidence 7777876521 1111 112234455432 3 2234556778889999999999988999986 4788889888 Q ss_pred EEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe Q lcl|Aclame:pro 139 VVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY 218 (456) Q Consensus 139 ~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 218 (456) .+..+.. .+ .|....++. . ..|.++.+.|+... + . T Consensus 154 ~v~~~~~---~~----~y~~~~~g~--~-~~~~~~eIih~r~~--------------------------~---------~ 188 (424) T protein:vir:18 154 DVKLVGK---KV----VYRYQRDSE--Y-ADFSQKEIFHLKGF--------------------------G---------F 188 (424) T ss_pred EEEEcCC---eE----EEEEEeCCe--E-EEeccccEEEecCc--------------------------C---------C Confidence 7765432 11 111111111 1 12334444443200 0 0 Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhh-hhh-h-hhhccceeecC Q lcl|Aclame:pro 219 QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDY-ASI-F-EAAPGALWELP 292 (456) Q Consensus 219 ~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~-~~~-~-~~~~~~~~~~~ 292 (456) ....|.|.++.....++...... .....+|.+ |..++.-... ...++.-..+.. ... . ....+++..++ T Consensus 189 dg~~G~spi~~~~~~i~~~~a~~---~~~~~~f~ng~~p~gil~~~~~--~l~~e~~~~~~~~~~~~~~g~nag~~~vl~ 263 (424) T protein:vir:18 189 TGLVGLSPIAFACKSAGVAVAME---DQQRDFFANGAKSPQILSTGEK--VLTEQQRSQVEENFKEIAGGPVKKRLWILE 263 (424) T ss_pred CCcccccHHHHHHHHHHHHHHHH---HHHHHHHHccCCcceEEEeCCc--CCCHHHHHHHHHHHHHHhCCcccCCceecc Confidence 01125665544433333222111 112222222 3333321111 111121112111 000 1 11234567778 Q ss_pred CCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhcccccc-chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 PGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILV 369 (456) Q Consensus 293 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~ 369 (456) .+.++.++.... ...|++..+....+|+..-++|++.++....+ ..+..++.....+...| .-..+.+...+.+.+ T Consensus 264 ~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L- 342 (424) T protein:vir:18 264 AGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRWL- 342 (424) T ss_pred CCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc- Confidence 888887765332 23477888888899999999999999743222 22333333333332221 111122222222111 Q ss_pred HHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-HHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 370 KALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-QDDLDRAREQITLFAGNPVQ 448 (456) Q Consensus 370 l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~~e~~~~~e~~~~~~~~~~~ 448 (456) + -.......-+++.+......|..+.++++.++.++|+++.-.+++.+|+.|-+-- +.-....--.++.++ ... T Consensus 343 --~-~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD~~~~~~n~~~l~~~~--~~~ 417 (424) T protein:vir:18 343 --I-PAKDVGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGGDVAMRQSQYVPITDLG--TNK 417 (424) T ss_pred --C-CccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCccchHhhh--ccC Confidence 0 0111112224444555567888999999999999999999999999998864211 110000000111221 234 Q ss_pred cccCCCC Q lcl|Aclame:pro 449 RPQEDGS 455 (456) Q Consensus 449 ~~~~~Gs 455 (456) .|..+|+ T Consensus 418 ~p~~~ga 424 (424) T protein:vir:18 418 EPRNNGA 424 (424) T ss_pred CCccCCC Confidence 6788888 No 163 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=98.89 E-value=1.8e-08 Score=62.98 Aligned_cols=392 Identities=9% Similarity=0.009 Sum_probs=171.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCcc-cccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLA-RYSNGDAPL-PELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~-~YY~g~~~i-~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) |+=..-+-++.++.+.... +.. .-..+-.+. .+.+...... ....-..+.-...+|+..++-+..-|+.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v--~~~~a~~~~~v~~~i~~ia~~iA~lp~~~ 72 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLID------NWIDQSTSKLYDFSPWKNRSFWGV--INNTLETNETIFSAITKLSNSMASLPLKM 72 (412) T ss_pred CccchhhhhhhhhhhhHhh------hhhcccccccccccccCCcccccc--chhhhhccHHHHHHHHHHHHhHhhCceeE Confidence 3211111122211111110 110 000110110 0111110000 00111233445667787877777778765 Q ss_pred CCCccccHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEE Q lcl|Aclame:pro 79 GGSADSDLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRA 152 (456) Q Consensus 79 ~~~~d~~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~ 152 (456) ....+ .....+..++.. |. -..+...++.+++.+|.||+++.++..|.+ .+..++|..+.+..++... .+ T Consensus 73 ~~~~~-~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~-~~-- 148 (412) T protein:vir:26 73 YEDYK-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-EL-- 148 (412) T ss_pred eeccc-cccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCc-EE-- Confidence 32221 222334444432 32 234557788899999999999999999986 5888899999888875432 11 Q ss_pred EEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHH Q lcl|Aclame:pro 153 AMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHID 232 (456) Q Consensus 153 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~ 232 (456) +|......... ..|.++.+.|+... .+ ...-.|.|.++.... T Consensus 149 ---~y~~~~~~g~~-~~~~~~evih~~~~-------------------------------~~---~~~~~G~s~i~~~~~ 190 (412) T protein:vir:26 149 ---YYSIHAATGNK-LIVHNMDMLHFKHI-------------------------------VA---SNMVQGISPIDVLKN 190 (412) T ss_pred ---EEEEEcCCceE-EEEccccEEEeCCC-------------------------------CC---CCCcccccHHHHHHH Confidence 11111111111 12444444443210 00 000125665554444 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH-hhc-CCCccccccccchhhhh-hhhhhhhhccceeecCCCcceeeccccch-HHH Q lcl|Aclame:pro 233 IINRINRAELQLLSTMAIQAFRQR-ALK-STEHGLPNVDENGNAID-YASIFEAAPGALWELPPGVDIWESQANDF-TPM 308 (456) Q Consensus 233 liD~~~~~~s~~~~~~~~~~~~~~-~i~-G~~~~~~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (456) .++..+.+... .......+-. ++. +... .++.-+.+. .....-...+.+..++.+.++.++..... ..| T Consensus 191 ~i~~~~a~~~~---~~~~~~~~~~~i~~~~~~l----~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~ 263 (412) T protein:vir:26 191 TTDFDNAVRTF---NLTEMQKPDSFMLKYGSNV----GKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDI 263 (412) T ss_pred HHHHHHHHHHH---HHHhcCCCCceEEecCCCC----CHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHH Confidence 44332222111 1111111111 111 1111 111111111 11111223455777788888877653322 247 Q ss_pred HHHHHHHHHHHHhhcCCChhhhccccc-cc-hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccce Q lcl|Aclame:pro 309 LSAIKEHIRQLSSATKTPLPMLMPDSA-NQ-SAEGAH--NIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVD 384 (456) Q Consensus 309 ~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~-Sg~Al~--~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~ 384 (456) ++..+....+|+.+-++|+..++...+ +- +.+... +....|.-.+.. +...|.+- ++.-.+......++ T Consensus 264 ~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~----ie~~ln~k---Ll~~~~~~~~~~~~ 336 (412) T protein:vir:26 264 VASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQ----YEEEFNRK---LLTKTDREKNRYFK 336 (412) T ss_pred HHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHH----HHHHHHhh---cCCcccccCcceEE Confidence 777777889999999999999975432 21 222211 111222221111 11111111 00001111122244 Q ss_pred EEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-HHHHHHHHHHHHHHhhccc-ccccCCCCC Q lcl|Aclame:pro 385 VSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-QDDLDRAREQITLFAGNPV-QRPQEDGSR 456 (456) Q Consensus 385 v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~~e~~~~~e~~~~~~~~~~-~~~~~~Gs~ 456 (456) +.+.+....+..+.++++.++.++|+++.-.+++.+|+.|-+-- +.-....--.++...+... ...+++.++ T Consensus 337 fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~gG~~n~~ 410 (412) T protein:vir:26 337 FNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVN 410 (412) T ss_pred eechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccchhhcccccCCCCCcC Confidence 44445566788999999999999999999999999998764211 1000000000000000000 011111111 No 164 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=98.88 E-value=2.1e-08 Score=62.65 Aligned_cols=437 Identities=10% Similarity=0.026 Sum_probs=171.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHhhccCcccc-----cCcccchhhhhhhhhhcCChHHHHHHHHHHhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGM----SRVRLLARYSNGDAPLPE-----LTRNTSAAWRSFQREARTNWGLMVRDSVADRI 71 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~----~~~~~~~~YY~g~~~i~~-----~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l 71 (456) |+.++-..+|...++.+...+ ++.+.+++||.......+ ..+.....-....+|+..+.+...++.+++.| T Consensus 20 ~~~~~~~~~l~~~~~~~~~~R~~~e~~W~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ki~~~~~~~~~~~l~s~L 99 (641) T protein:vir:94 20 LSTDRIGGVVISKWQESRDKRNTVENNWDETYELYRASAIDRQNTRARNFQTTGADDADWRHRINTGHTFEVVETLVAYF 99 (641) T ss_pred CCchhHHHHHHHHHHHHHHhhcchHHHHHHHHHHhhcchhhhhhcccccccccccchhcccccccchhHHHHHHHHhhHH Confidence 555554444444444444433 345566777765433211 11111111122344678888888888887777 Q ss_pred hcC----C--cccC--CCccccHHHHHHH----HHHhcChhHHHHHHHHHHhhCCeeEEEEEeC---------------- Q lcl|Aclame:pro 72 IPN----G--ITVG--GSADSDLALRARR----IWRDNRMDSVCKQWVKYGLDFGESYLTCWRR---------------- 123 (456) Q Consensus 72 ~g~----~--~~~~--~~~d~~~~~~l~~----~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~---------------- 123 (456) .+- + |++. ..+|.+..+.+++ .+.+|++......+.++++.+|.+++.++-+ T Consensus 100 m~~~~p~~~wf~~~p~~~ed~~~A~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~g~~iv~~~w~~~~~~~~~~~~~~~~~ 179 (641) T protein:vir:94 100 KGATFPSDDWFDLKGMVPELADAARVVKQLTKTKLEAASIRDIFETYVRNLVLYGVSTYRLGWDTSMERQFKRTFVETGD 179 (641) T ss_pred hhhhcCCCceEEEecCCCChHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhcCceEEEeehhhHHHHhhhhhcccchh Confidence 542 1 2321 2334333333333 3456777787889999999999998877521 Q ss_pred ------------CCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec--------CCc-----------eeEE----- Q lcl|Aclame:pro 124 ------------DDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL--------DAE-----------SDFA----- 167 (456) Q Consensus 124 ------------~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~--------~~~-----------~~~~----- 167 (456) ....+++..++|.+++ +|+..+..-..++++.... .+. ..+. T Consensus 180 ~~~~~~~~~v~~~~~~~r~~~v~~~di~--~dps~~~~~~~f~~~r~t~~t~~~l~~eg~~~~d~v~~~~~~~~~~~~~d 257 (641) T protein:vir:94 180 IFGGWEDVAVNRQRSELRIEPLSPYDVW--LDTSGGKNTGTFVRLRHTREELHELVTSGYYDLDLTQVEQYVDYKFADPD 257 (641) T ss_pred hcccccccceecccceeeEEecchhhee--ecCCCCcccccceehhhhHHHHHHHHhcCCCChhhcchhhcccccccccc Confidence 1123456666666654 4444322111112211000 000 0000 Q ss_pred ---E-EEeCC---eEEEEEEcccccccccce-eeccCCCccccc-ccccccCceeEEEEe-----cCCCCCchHHHHHHH Q lcl|Aclame:pro 168 ---I-VWSGD---GWQKFARPCFVQSSSRRR-LVTRISDSWVPV-GDAVVTGSPPPVVVY-----QNPDGMGEVEPHIDI 233 (456) Q Consensus 168 ---~-~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~pv~~~-----~n~~~~s~~~~v~~l 233 (456) . -+... +++++........ ..++ .+....+..... ...+.+.+.|+++.. ..-.|.|....+++. T Consensus 258 ~~~d~~~~~~~~~~~~e~~gd~~~d~-~~~~~~~~~~~g~~il~~~~~~~~d~~Pf~~~r~~~~~~~~YG~gp~~~~l~d 336 (641) T protein:vir:94 258 TPKDVNGTDTSGWDIIEYYGPLLVEG-VQFWCVHAVFYGKQLIRLSDSKYWCGSPFVTTTLLPDRDSVYGMSVLHPNLGA 336 (641) T ss_pred cccccccccccccceeeeeeeeccCC-CceeeEEEEEeCCEEeecccccccCcCCeEEecceecCCcccCCChHHHHHHH Confidence 0 00000 1111111110000 0111 111111111111 111122234433221 234689999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeecc--ccchHHHHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQ--ANDFTPMLSA 311 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 311 (456) +..+|...-.++..+.....|...+.... .. ....+...+|.++..+....+.-+. ..+....... T Consensus 337 qk~ln~l~r~~ld~~~~~~~p~~~~~~~~--~~----------~~~~l~~~PG~ii~~~~~~~v~pl~~~~~~~~~~~~~ 404 (641) T protein:vir:94 337 LHVLNVLTNGRLDNLVLHINKMWTLVEDG--IL----------KREDVKAKPGAVFKVAQHGSLQPIDMGRQDFVVTYQE 404 (641) T ss_pred HHHHHHHHHHHHHHHHHHhCCeeeecccc--cc----------ccceeeccCCcceeeCCCCcceeecCCccccchhHHH Confidence 99999999998988888888765432110 00 0011223344443333222222111 1111111122 Q ss_pred HHHHHHHHHhhcCCChhhh--c-cccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHh--------- Q lcl|Aclame:pro 312 IKEHIRQLSSATKTPLPML--M-PDSANQSAEGAHNIEKGFLFKCEDRLSIAKI-GLE----AILVKALQI--------- 374 (456) Q Consensus 312 ~~~~~~~i~~~t~~p~~~~--~-~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~-~l~----~~~~l~~~~--------- 374 (456) ++.+...+-..+++..... . ..+.+.++..+.........+....-+.|.. .++ +++.++.+. T Consensus 405 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV~~~~~e~~~~l~~i~r~l~~e~l~pll~~~~~~~~~~~~~p~i~R~ 484 (641) T protein:vir:94 405 AQVQESSVYRNTSTGPLIGNAAPRGGERVTAAEIQGVRDAGGNRLSSVHTHIEDSSTLPLLNKVFSLLQQFYVTPETIRM 484 (641) T ss_pred HHHHHHHHHHhhhhhhhhcccccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh Confidence 2222223333333322111 1 1112345666665555555555555555553 333 333333221 Q ss_pred -------cCCC--ccccceEEe--cCCCCCCHHHHHHHHHHHHh----cCCCc--------H---HHHHHhCCCC-c--- Q lcl|Aclame:pro 375 -------EGES--VEDTVDVSF--ESPDRVTLGEKYSAASLAKA----AGESW--------A---SIRRNILNYN-A--- 424 (456) Q Consensus 375 -------~g~~--~~~~i~v~f--~~~~~~~~~e~ad~~~kl~~----~g~~s--------~---~t~~~~~~~~-~--- 424 (456) .|.. ....+...| .+......++.++.+..|.+ .|-.+ . +..++..|+. + T Consensus 485 ~~~~~~~~~~~~~~p~~L~~~~~iv~l~~~q~~~~~~~i~~l~~~~~~~a~~P~v~d~~d~~~~~~~~~~~~g~~~p~~~ 564 (641) T protein:vir:94 485 YVPEEQMDGFFEVSPEYLHYPYKFLALGANYVVERERMVTDLLQLLDISGRVPQIGQSLDYALILEDLLRQMRFTDPMRY 564 (641) T ss_pred hchhhhcccCCCCCccceeeeeeEeecchhHHHHHHHHHHHHHHHHHHhhcChhhhhcCCHHHHHHHHHHHhCCCCchhh Confidence 1110 111222222 12122222233333332221 11111 1 1223333432 1 Q ss_pred ----cHHHHHHHHHHHHHHHHHhhccccccc--CCCCC Q lcl|Aclame:pro 425 ----DQIKQDDLDRAREQITLFAGNPVQRPQ--EDGSR 456 (456) Q Consensus 425 ----~~~~~~e~~~~~e~~~~~~~~~~~~~~--~~Gs~ 456 (456) ++..+....++++.-.++ .+..+ .++++ T Consensus 565 ir~~~~~~~~~~~~~~~~q~~~----~~~a~~~~~~~~ 598 (641) T protein:vir:94 565 IKKAEAPPAAPPIAPAEPGALP----PEMMNSVGGGLN 598 (641) T ss_pred ccCccCchhHHHHHHHHHHHHH----HHHHHHHHhhhH Confidence 111111111111100000 01111 11111 No 165 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=98.87 E-value=1.2e-08 Score=63.99 Aligned_cols=372 Identities=10% Similarity=-0.009 Sum_probs=164.2 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcccc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGM-SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSD 85 (456) Q Consensus 7 ~~~~~~l~~~~~~~~-~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~ 85 (456) +-|++++...-.... .-...+...+-+-. ..+...... .-+...-...+|+..++-+..-|+.+....... T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~-----~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 72 (382) T protein:vir:48 1 MPIFNLATESPPDNQGGFFDVVDSDFLASL---KGNEWVSAE-----TALRNSDLFSIINQLSNDLATVKLITSRKKLQG 72 (382) T ss_pred CccccccccCCcccccccccchhhhccccc---cCCcccchH-----hhhccHHHHHHHHHHHHhhccCceeeecchhhh Confidence 223333222110000 00000011110000 000111110 011223445678888887777788765432221 Q ss_pred HHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEecCCce Q lcl|Aclame:pro 86 LALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAES 164 (456) Q Consensus 86 ~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~ 164 (456) .+.+-........+...+..+++.+|.||+++-.+.+|.+ .+.+++|..+.+..++... .+.. .+...+... T Consensus 73 ---L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~-~~~y---~~~~~~~~~ 145 (382) T protein:vir:48 73 ---IVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKD-GIYY---NITFDDPRI 145 (382) T ss_pred ---hhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCC-eEEE---EEEecCccc Confidence 1111111112356667788899999999999999998986 6888999999887754332 1110 011111111 Q ss_pred eEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 165 DFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQL 244 (456) Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~ 244 (456) .....+.++.+.|+... +.. ....|.|-+..+...++.......-. T Consensus 146 ~~~~~~~~~evih~~~~--------------------------~~~--------~~~~G~s~l~~~~~~i~~~~~~~~~~ 191 (382) T protein:vir:48 146 PPKQHVPQNDVLHFRLL--------------------------SVD--------GGMTSVSPLMALSRELDIQKASGNLT 191 (382) T ss_pred cceeEEcCccEEEecCC--------------------------CCC--------CccccccHHHHHHHHHHHHHHHHHHH Confidence 11122333444433210 000 01236665555555444433322222 Q ss_pred HHHHHHHhhhHHhhcCCCccccccccchhhhhh-hhhhhhhccceeecCCCcceeeccccc-hHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 245 LSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY-ASIFEAAPGALWELPPGVDIWESQAND-FTPMLSAIKEHIRQLSSA 322 (456) Q Consensus 245 ~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 322 (456) .....-.+.|..+++-... ..++....+.. ........++++.++.+.++.++...+ ...+++..+....+|+.. T Consensus 192 ~~~~~ng~~p~~il~~~~~---~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~a 268 (382) T protein:vir:48 192 INSLKNALNANGILKIKGG---GLLDFKTKLSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKV 268 (382) T ss_pred HHHHhccCCCceEEEeCCC---CChHHHHHHHHHHHhhccCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHH Confidence 2222222234333321111 11111111111 111223346677788888887765332 234778888888999999 Q ss_pred cCCChhhhccccccch-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHH Q lcl|Aclame:pro 323 TKTPLPMLMPDSANQS-AEGAHN-IEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) Q Consensus 323 t~~p~~~~~~~~~n~S-g~Al~~-~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad 400 (456) -++|+..+|....+.+ ..+.+. ....+.-.+.. +...+.+.+ ... ...++...+ + .+...... T Consensus 269 fgVp~~~lg~~~~~~~~~~~~~~~~~~~l~p~~~~----i~~~l~~~l------~~~-~~~~~~~~~-~---~~~~~~~~ 333 (382) T protein:vir:48 269 YGIPDNVVGGQGDQQSSLEMSSDLYSKAVSRYLRP----FLSELSQKL------SCD-VDADIFPAV-D---PTGSNYIS 333 (382) T ss_pred hCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHH----HHHHHHHHh------cCh-hhhhhhhhh-c---cchhHHHH Confidence 9999999986443332 222222 11222222222 222222111 111 011111111 1 12234455 Q ss_pred HHHHHHhcCCCcHHHHHHhC---CCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 401 AASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 401 ~~~kl~~~g~~s~~t~~~~~---~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .+.+|..+|+.++..+++.+ ||.++++.+.+. . .+.-.++++..+ T Consensus 334 ~~~~l~~~g~~t~~e~r~~l~~~g~~~~~~~~~~~------~-----~~~~~GGd~~~~ 381 (382) T protein:vir:48 334 RINSLVKTGTLAQNQGLYILQQAEILPKELPNGEN------P-----NSTLKGGEEDGQ 381 (382) T ss_pred HHHHHhhcCccCHHHHHHHHhhCCCCCcchhhhhc------C-----CCCCCCCCCCCC Confidence 66778888999998888765 676654433211 0 011112222222 No 166 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=98.87 E-value=2.3e-08 Score=62.46 Aligned_cols=408 Identities=10% Similarity=0.043 Sum_probs=172.1 Q ss_pred CCCCCHHHHHHHHHHH-HHH----HHH-----HHHHHHHHhhccCccc--------c-------cC-cccchhhhhhhhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKR-IDD----GMS-----RVRLLARYSNGDAPLP--------E-------LT-RNTSAAWRSFQRE 54 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~-~~~----~~~-----~~~~~~~YY~g~~~i~--------~-------~~-~~~~~~~~~~~~k 54 (456) +-..|-+++-+.+... |.. +.. .-+.+...-.++.... . .+ ...+..+.+..+. T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (574) T protein:vir:80 11 IEKSSIEETRNMENYKMHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHKTLKK 90 (574) T ss_pred cchhhHHHHHhhhhhccccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHHHHHh Confidence 4455666666554432 111 110 0122333333332110 0 00 0011112221111 Q ss_pred hc-CChHHHHHHHHHHhhh-----------cCCcccC--CC--c----cccHHHHHHHHHHhc---------ChhHHHHH Q lcl|Aclame:pro 55 AR-TNWGLMVRDSVADRII-----------PNGITVG--GS--A----DSDLALRARRIWRDN---------RMDSVCKQ 105 (456) Q Consensus 55 ~~-~n~~~~iVd~~~~~l~-----------g~~~~~~--~~--~----d~~~~~~l~~~~~~n---------~~~~~~~~ 105 (456) .. ......++++.++.+. +-|+.+. .. . +......+.+++... .+..+... T Consensus 91 ~~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~ 170 (574) T protein:vir:80 91 FGNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKK 170 (574) T ss_pred hccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHH Confidence 11 2244555555544332 2344331 00 1 111122344444321 23346677 Q ss_pred HHHHHhhCCeeEEEEEeCCCCceE-EEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccc Q lcl|Aclame:pro 106 WVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFV 184 (456) Q Consensus 106 ~~~~~~~~G~a~~~v~~~~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (456) +..+.+.+|.+|+.+-.+.+|++. +.+++|..+.+..|.... ......+||...++.. ...|..+.+.++.... T Consensus 171 lv~~lll~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~-~~~~~~~y~~~~~g~~--~~~~~~~eiih~~~~~-- 245 (574) T protein:vir:80 171 LVRATYMYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGK-LIKNGERFVQVIDNRI--VAKFNERELAFAVRNP-- 245 (574) T ss_pred HHHHHHhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccc-cccCceEEEEEeCCce--EEEEccccEEEEeccC-- Confidence 888889999999998888889874 888999999888764321 1111122332222221 1123333444332100 Q ss_pred cccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCC Q lcl|Aclame:pro 185 QSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKST 261 (456) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~ 261 (456) ..+. .....|.|.++.+...++....+. .....+|.+ |.-++.- T Consensus 246 ---------------------~~~~--------~~~~~G~spi~~a~~~i~~~~~a~---~~~~~~f~ng~~p~gil~~- 292 (574) T protein:vir:80 246 ---------------------RADI--------EVGQYGYPELEIALKQFIAHENTE---VFNDRFFSHGGTTRGILHV- 292 (574) T ss_pred ---------------------CCCc--------ccccccccHHHHHHHHHHHHHHHH---HHHHHHHhccCCCceEEEe- Confidence 0000 001136666655544444333322 222334433 3322321 Q ss_pred Cccccccccchhhhhhhhhhh------hhccce-eecCCCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccc Q lcl|Aclame:pro 262 EHGLPNVDENGNAIDYASIFE------AAPGAL-WELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPD 333 (456) Q Consensus 262 ~~~~~~~d~~g~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~ 333 (456) ..+....++.-..+. ..|. ...+++ +..+.+.++..+..... ..|++..+....+|+.+-++|++.+|.. T Consensus 293 ~~~~~ls~e~~~~lk--~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~ 370 (574) T protein:vir:80 293 KTGQQQSQQALDIFR--REWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDPAEINFP 370 (574) T ss_pred CCCCCCCHHHHHHHH--HHHHHHhccccccccceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccc Confidence 001111111111111 1111 122333 34466778777653322 3478888889999999999999999742 Q ss_pred cccc---------hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHH Q lcl|Aclame:pro 334 SANQ---------SAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAAS 403 (456) Q Consensus 334 ~~n~---------Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~ 403 (456) .... +...+......+...| .=+.+.+...|.+.+ + .. ....+.+.|......+..+...+ . T Consensus 371 ~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~L---l--~~--~~~~~~~~f~~~d~~~~~~~~~~-~ 442 (574) T protein:vir:80 371 NNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYI---V--AE--FGEKYQFQFRGGDLSAQLDKLKI-I 442 (574) T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---h--hh--cCCceEEEecccchhhHHHHHHH-H Confidence 2110 1111222211111111 111122222222211 1 11 12345677877766666655543 4 Q ss_pred HHHhcCCCcHHHHHHhCCCCccHH-------------HHH------HHHHHHHHH----HHHhhcccccccCCCCC Q lcl|Aclame:pro 404 LAKAAGESWASIRRNILNYNADQI-------------KQD------DLDRAREQI----TLFAGNPVQRPQEDGSR 456 (456) Q Consensus 404 kl~~~g~~s~~t~~~~~~~~~~~~-------------~~~------e~~~~~e~~----~~~~~~~~~~~~~~Gs~ 456 (456) ++..+|+++.-.+++.+|+.|-+- ... +.+..+... ...+..+...+.+.++. T Consensus 443 ~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 518 (574) T protein:vir:80 443 EQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSGGDVEQPEPEEPKD 518 (574) T ss_pred HHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhccccccccccCCCCCCCCCCCCCC Confidence 566789999999999988755210 000 001111111 11111111111111111 No 167 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=98.87 E-value=9.9e-09 Score=64.46 Aligned_cols=383 Identities=11% Similarity=-0.024 Sum_probs=169.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc----------------ccccCcccchhhhhhhhhhcCChHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAP----------------LPELTRNTSAAWRSFQREARTNWGLMVR 64 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~----------------i~~~~~~~~~~~~~~~~k~~~n~~~~iV 64 (456) |. -.+..++.-.-..+-.+..+++.+.- ....+..+.. ..-+.+.=...+| T Consensus 1 ~~--------~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~vs~-----~~al~~~~v~~cv 67 (424) T protein:vir:45 1 ML--------YCWWAHWLWPEGGRVLLDALFRSKSLENPSTPITGDAVDTDGLFRADVYVSP-----ETAMKLAAVYSCI 67 (424) T ss_pred Ce--------eEeeeceecCcchhHHHHhhccccCCCCCccccchhhhhhhccccCCceech-----HHhhccHHHHHHH Confidence 11 11111110000011111222211110 0000000000 0001122234567 Q ss_pred HHHHHhhhcCCcccCCCcc--cc--HHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEc Q lcl|Aclame:pro 65 DSVADRIIPNGITVGGSAD--SD--LALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADS 134 (456) Q Consensus 65 d~~~~~l~g~~~~~~~~~d--~~--~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~ 134 (456) +..++-+..-|+.+-...+ .+ ....+.+++.. |. -..+...+...++.+|.||+.+-.+..|.+ .+.+++ T Consensus 68 ~~Ia~~iA~lp~~v~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~ 147 (424) T protein:vir:45 68 YVLSSSLAQMPLHVMRRHKGKVEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCM 147 (424) T ss_pred HHHHHHHhhCceEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEec Confidence 7777777777876521111 11 11234444432 32 234556788889999999999989888987 478888 Q ss_pred cceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeE Q lcl|Aclame:pro 135 PETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPP 214 (456) Q Consensus 135 p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 214 (456) |..+.+..+.. ++ . |........ ..+.++.+.|+... + T Consensus 148 ~~~v~i~~~~~---~~----~-y~~~~~~~~--~~~~~~eVih~r~~--------------------------~------ 185 (424) T protein:vir:45 148 PWETTLMNTGG---RY----T-YGLYNEYGA--FAISPDDMIHIRAL--------------------------G------ 185 (424) T ss_pred CceEEEEEcCC---eE----E-EEEEecCce--EEECcccEEEecCc--------------------------C------ Confidence 88876654321 11 1 111111111 11333333332100 0 Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhh--hhhh---hhhcc Q lcl|Aclame:pro 215 VVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDY--ASIF---EAAPG 286 (456) Q Consensus 215 v~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~--~~~~---~~~~~ 286 (456) .+...|.|.++.....++... +-......+|.+ |..++.-... ..++.-+.+.. .... ....+ T Consensus 186 ---~d~~~G~spi~~~~~~i~~~~---~~~~~~~~~f~ng~~p~gil~~~~~---l~~e~~~~~~~~~~~~~~g~~~n~g 256 (424) T protein:vir:45 186 ---NNQKMGLSPIMQHAETIGMGM---SGQKYTESFFSGNARPAGIVSVKSG---LNKESWGWLKDQWQKASQALRRQEN 256 (424) T ss_pred ---CCCcccccHHHHHHHHHHHHH---HHHHHHHHHHhccCCccEEEEeCCC---CCHHHHHHHHHHHHHHhccccccCC Confidence 001125665554433333222 221122233333 3333332111 11111111111 0111 12345 Q ss_pred ceeecCCCcceeeccccchH-HHHHHHHHHHHHHHhhcCCChhhhcccc-ccchH-H--HHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 287 ALWELPPGVDIWESQANDFT-PMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQSA-E--GAHNIEKGFLFKCEDRLSIAK 361 (456) Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~Sg-~--Al~~~~~~l~~k~~~~~~~f~ 361 (456) ++..++.+.++.++...+.+ .|++..+....+|+..-++|++.++... ++-|+ + .+.+....|.-.+...+..+. T Consensus 257 ~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln 336 (424) T protein:vir:45 257 KTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSNISAQAIQFVRYTMMPWVTNWEQELN 336 (424) T ss_pred ceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 67778888888777644332 3778888888999999999999997432 22121 1 222222222222222222111 Q ss_pred HHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 362 IGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITL 441 (456) Q Consensus 362 ~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~ 441 (456) ..| +.-........+++......-.|..+.++++.+++++|+++...+++.+|+.|-+--+.-... -.... T Consensus 337 ~kL-------l~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~~~~--~n~~~ 407 (424) T protein:vir:45 337 RRL-------FTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEMLVS--VNAAN 407 (424) T ss_pred Hhc-------CChhhhcCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec--ccccc Confidence 111 000001111224444445556788899999999999999999999999998764211100000 00001 Q ss_pred HhhcccccccCCCCC Q lcl|Aclame:pro 442 FAGNPVQRPQEDGSR 456 (456) Q Consensus 442 ~~~~~~~~~~~~Gs~ 456 (456) ..+...+.++++|+. T Consensus 408 ~~~~~~~~~~~~~~~ 422 (424) T protein:vir:45 408 PAGDFKPPKNDEGKT 422 (424) T ss_pred cccccCCCCCCCCCC Confidence 122233334444444 No 168 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=98.86 E-value=2.5e-08 Score=62.29 Aligned_cols=371 Identities=12% Similarity=0.035 Sum_probs=177.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) -..+||..+..-|...-.-...++..+.+..+- ......-++.+...-+.+.++++.. T Consensus 37 ~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e----------------------~D~~i~s~l~~Rk~av~~~~w~I~p 94 (526) T protein:vir:99 37 AKGLTPAKLARILVEAEQGNLQAQAELFMDMEE----------------------RDAHLFAEMSKRKRAILGLDWAVEP 94 (526) T ss_pred cCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHh----------------------hChHHHHHHHHHHHHHhCCCceEec Confidence 123444443333322211111222222111000 1234455566666667777777643 Q ss_pred Cc-----cccHHHHHHHHHHhc-ChhHHHHHHHHHHhhCCee-EEEEEeCCCCceEE---EEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 81 SA-----DSDLALRARRIWRDN-RMDSVCKQWVKYGLDFGES-YLTCWRRDDGTATI---TADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 81 ~~-----d~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~a-~~~v~~~~~g~~~i---~~~~p~~~~~i~d~~~~~~~ 150 (456) .. +....+.+.+.+.+- +|.....++. ++.-+|.+ ++++|...+|...+ ...+|+.+ .||+..+.. T Consensus 95 ~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~g~~~~~~l~~r~~~~f--~~~~~~~~~- 170 (526) T protein:vir:99 95 PRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWF--QLNPEDQNE- 170 (526) T ss_pred CCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHH-HhhhhcceeEEEEEeecCCceeEEEeeeecccce--eeccCCCcE- Confidence 22 223344566666553 5777777665 68889986 45778766666543 33333321 123222111 Q ss_pred EEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEE---ecCCCCCchH Q lcl|Aclame:pro 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVV---YQNPDGMGEV 227 (456) Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~---~~n~~~~s~~ 227 (456) +++ .+...++ ..+. .++.+...+ ..|+.|.|.+ T Consensus 171 ---l~~-~~~~~~g--~~l~--------------------------------------~~k~i~~~~~~~~g~p~g~gLl 206 (526) T protein:vir:99 171 ---LRL-RDNSPAG--EALQ--------------------------------------PFGWIIHRPRARSGYVARSGLF 206 (526) T ss_pred ---EEe-cCCCCCc--eeec--------------------------------------CCCeEEEeecCCcCCccccchH Confidence 000 1100000 0000 111111111 1366788888 Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeec--ccc Q lcl|Aclame:pro 228 EPHID--IINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES--QAN 303 (456) Q Consensus 228 ~~v~~--liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 303 (456) ..+.- +...+ .+.+.+..++.|+.|.++.+=.... .+++.+.+.. .......+....++.+.++..+ ... T Consensus 207 r~~~w~~~fK~~--~~~~w~~f~E~yG~P~~igky~~~a---~~~ek~~L~~-av~~i~~d~~~iiP~~~~ie~~ea~~~ 280 (526) T protein:vir:99 207 RVLAWPYLFRHY--ATSDLAEMLEIYGLPIRLGKYPPGT---ADEEKATLLR-AVTGLGHAAAGIIPETMAIDFQQAAQG 280 (526) T ss_pred HHHHHHHHHHHh--hHHHHHHHHHHcCCceEEEecCCCC---CHHHHHHHHH-HHHHHhhCcEEEecCCceeEEeecCCC Confidence 76543 33333 5777788889999998776521110 1122222211 1222333445556666554333 234 Q ss_pred chHHHHHHHHHHHHHHHhhc-CCChhhhccccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCc- Q lcl|Aclame:pro 304 DFTPMLSAIKEHIRQLSSAT-KTPLPMLMPDSANQSAEGAH-NIEKGFLFKCEDRLSIAKIGLE-AILVKALQIEGESV- 379 (456) Q Consensus 304 ~~~~~~~~~~~~~~~i~~~t-~~p~~~~~~~~~n~Sg~Al~-~~~~~l~~k~~~~~~~f~~~l~-~~~~l~~~~~g~~~- 379 (456) ....|...++.+-++|++.. |=......+ .++.+.-|+. ....-....++.-.+.+...+. ++++.++.+.+... T Consensus 281 ~~~~f~~li~~~d~~Isk~iLGqtlTs~~~-~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~ 359 (526) T protein:vir:99 281 SSEPFLAMMRQSEDAISKAVLGGTLTSTTS-QSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSP 359 (526) T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhccccc-cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC Confidence 44668888888888887643 211111100 1112222222 2223333344444566667774 47777777765322 Q ss_pred --cccceEEecCCCCCCHHHHHHHHHHHHhcCC-CcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 380 --EDTVDVSFESPDRVTLGEKYSAASLAKAAGE-SWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 380 --~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~-~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ....++.|....+.+..+.++.+.+|+..|+ ++.+.+.+.+|+......+.-.... ..+...+...|.+ T Consensus 360 ~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~Gip~~~~~e~~l~~~--------~~~~~~~~~~~~~ 431 (526) T protein:vir:99 360 DVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSA--------AQPAILSRQHGQR 431 (526) T ss_pred CccccceEEeCCCCcccHHHHHHHHHHHHhCCCccCHHHHHHHhCCCCCCCcccccCCC--------CCCcccccccccc Confidence 2235678888899999999999999999997 8889999999985321111100000 0000000111111 No 169 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=98.83 E-value=5.3e-09 Score=65.97 Aligned_cols=371 Identities=11% Similarity=-0.017 Sum_probs=158.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc--Cccc---ccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCC Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGD--APLP---ELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGS 81 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~--~~i~---~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~ 81 (456) +-|++++...-. .+. .-.+..-+- ..+. ..+...... . -+...=...+|+..++-+.+-|+++... T Consensus 1 Mglf~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~--~---al~~~~V~~~i~~Ia~~ia~l~~~~~~~ 71 (384) T protein:vir:49 1 MPIFNITNLATE--SPP--SNQDSFFDITDPEFLDALNGSEWVSAE--T---ALKNSDLFSIISQLSNDLATAKITTSRK 71 (384) T ss_pred CccccccccCcc--ccc--ccchhhccccchhhcccccCCceechh--h---hhccHHHHHHHHHHHHHHhhCceeeecc Confidence 112111100000 000 000000000 0000 000011100 0 0112223567888888888888887532 Q ss_pred ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 82 ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 82 ~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) .... .+.+-........+...+..+++.+|.||+.+-.+.+|.+ .+.+++|..+.+..++... .+.. .+... T Consensus 72 ~~~~---l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~-~~~y---~~~~~ 144 (384) T protein:vir:49 72 QLQG---IVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQN-GLYY---NITFD 144 (384) T ss_pred hhhh---hhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCc-eEEE---EEEec Confidence 2211 1111111123455667788899999999999999999986 5888899998887654322 1110 11111 Q ss_pred CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~ 240 (456) +........+.++.++|+... +.. ..-.|.|-+..+...++....+ T Consensus 145 ~~~~~~~~~~~~~eVih~~~~--------------------------~~~--------~~~~G~s~i~~~~~~i~~~~~~ 190 (384) T protein:vir:49 145 DPRIPPKQHVPQGDILHFRLL--------------------------SVD--------GGLTSVSPLMALGRELNIQKAS 190 (384) T ss_pred CccccceeEecCccEEEecCC--------------------------CCC--------CceeeccHHHHHHHHHHHHHHH Confidence 111111122333344433210 000 0013566555544444433322 Q ss_pred HHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccccc-hHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQAND-FTPMLSAIKEHIRQL 319 (456) Q Consensus 241 ~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i 319 (456) ..-..+.....+.|..+++-..... .++...............+++..++++.++.++...+ ...+++..+....+| T Consensus 191 ~~~~~~~~~ng~~~~~il~~~~~~~--~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~I 268 (384) T protein:vir:49 191 DKLTLNALKNALNANGILKIKGGGL--LDFKTKQSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQF 268 (384) T ss_pred HHHHHHHHhccCCCceEEEeCCCCC--hHHHHHHHHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHH Confidence 2222222222222333332111000 0111111111111223445677788888887765332 234678888899999 Q ss_pred HhhcCCChhhhcccccc-chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHH Q lcl|Aclame:pro 320 SSATKTPLPMLMPDSAN-QSAEGAHNIEKGFLFK-CEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGE 397 (456) Q Consensus 320 ~~~t~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k-~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e 397 (456) +..-++|+..++...++ .++..++..+...... +.-+...+...+..-+. ....+..-.+... T Consensus 269 a~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~pi~~~i~~~l~~~l~---------------~~~~~~~~~~~~~ 333 (384) T protein:vir:49 269 AKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSRFLRPFVSELSKKLSCEVD---------------ADILPAVDPTGSN 333 (384) T ss_pred HHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhh---------------hhhhhhhhccchH Confidence 99999999999865443 3455555444333322 22222222222211110 0000111111112 Q ss_pred HHHHHHHHHhcCCCcHHHHHHhC---CCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 398 KYSAASLAKAAGESWASIRRNIL---NYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 398 ~ad~~~kl~~~g~~s~~t~~~~~---~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ....+..|..+|+.++..+++.+ |+.+.++.++ + +.+.-..++.+-+ T Consensus 334 ~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~ne~r~~------~------~~~p~~gGd~~~~ 383 (384) T protein:vir:49 334 YIGLINSMVKTGTLAQNQGLYVLQQAEILPKDLPEG------E------TDSTLKGGETNEQ 383 (384) T ss_pred HHHHHHHHhhcCcccHHHHHHHHhhCCCCChhHHHH------c------CCCCCCCCCCCCC Confidence 22333445667777777666654 5554432221 1 1111123334444 No 170 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=98.83 E-value=3.3e-08 Score=61.60 Aligned_cols=393 Identities=11% Similarity=0.020 Sum_probs=168.4 Q ss_pred CCCCCH----HHHHHH-----------HHHHHHHHH---H--HHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChH Q lcl|Aclame:pro 1 MTASTP----AEWLPV-----------LTKRIDDGM---S--RVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWG 60 (456) Q Consensus 1 ~~~~t~----~~~~~~-----------l~~~~~~~~---~--~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~ 60 (456) |-=-+| .+|..+ +....+.+- + ....+-....|-... ........ .. +.+.=. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~a----l~~~~V 73 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGT--KLRQYKDI-EA----IRHSDI 73 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccccccCCCcchHHHHHHhhccccc--Cccccchh-hh----hccHHH Confidence 221111 000000 000000000 0 000000000000000 00001000 00 111112 Q ss_pred HHHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEc Q lcl|Aclame:pro 61 LMVRDSVADRIIPNGITVGGSADSDLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADS 134 (456) Q Consensus 61 ~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~ 134 (456) -.+|+..++-+..-|+.+...........+..++.. |. -..+...+...++.+|.||+++-.+.+|.+ .+..++ T Consensus 74 ~acv~~Ia~~iA~lpl~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~ 153 (441) T protein:vir:98 74 FTAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRK 153 (441) T ss_pred HHHHHHHHHhhccCceEEecCCcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEc Confidence 335677777666667776432222222234444432 32 234556788888999999999999989986 488999 Q ss_pred cceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeE Q lcl|Aclame:pro 135 PETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPP 214 (456) Q Consensus 135 p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 214 (456) |..+.+..|+. + .+...... .+..+. .....+.++.+.|+... + T Consensus 154 ~~~v~v~~~~~-g-~~~~~~~~-~~~~~~-~~~~~~~~~dviHir~~--------------------------------~ 197 (441) T protein:vir:98 154 TSEIELKLDAR-G-RLYYFHQR-IDSNGN-NIERNVKFEDMLDIKFY--------------------------------S 197 (441) T ss_pred CceeEEEECCC-C-cEEEEEEE-eccCcc-eeeEEEccccEEEeccC--------------------------------C Confidence 99999888643 2 22221111 111111 11122334444433200 0 Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccc-hhhhhh--hhhhh--hhcc Q lcl|Aclame:pro 215 VVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDEN-GNAIDY--ASIFE--AAPG 286 (456) Q Consensus 215 v~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~-g~~~~~--~~~~~--~~~~ 286 (456) ...-.|.|-+..+...++.......- ...+|.. |.-++.- . ....++. -+.+.. ..... ...+ T Consensus 198 ---~dg~~G~spi~~~~~~i~~~~a~~~~---~~~~f~ng~~~~gil~~-~--~~~~~~e~~~~~~~~~~~~~~G~~nag 268 (441) T protein:vir:98 198 ---LDGINGLSLLDTLSRTIESDNNGKDF---LNNFLRNGTHAGGILKM-K--GVLDNKKARDRAREEFHKSFSGTKQAG 268 (441) T ss_pred ---CCCccccCHHHHHHHHHHHHHHHHHH---HHHHHhccCCCcEEEEe-C--CCCCCHHHHHHHHHHHHHHhcCccccC Confidence 00012555555444333332222111 1222222 3222221 0 0111111 111111 01111 1234 Q ss_pred ceeecCCCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 287 ALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLE 365 (456) Q Consensus 287 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~ 365 (456) ++..++.+.++..+..... ..|++..+....+|+..-++|++.++...++.|.+.....+. .-..-+...+...+. T Consensus 269 ~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~y~---~tl~P~~~~ie~~ln 345 (441) T protein:vir:98 269 KVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDYL---STLKPYITCVCAELN 345 (441) T ss_pred cceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHH---HHHHHHHHHHHHHHH Confidence 5677888888877653322 247788888889999999999999986555444332222111 111111222222222 Q ss_pred HHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-----H-----HHHHH Q lcl|Aclame:pro 366 AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-----D-----DLDRA 435 (456) Q Consensus 366 ~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-----~-----e~~~~ 435 (456) +. +........+++......-.|..+.++++.++++.|+++...+++.+|+.|-+--. + ..+.. T Consensus 346 ~~------L~~~~~~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd~~~~~~~~n~~~~~~~ 419 (441) T protein:vir:98 346 FK------FNDEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVNIELV 419 (441) T ss_pred hh------ccccccCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccccccc Confidence 11 11111222334333445667888999999999999999999999999987632110 0 01110 Q ss_pred HH-HHHHHhhcccccccCCCCC Q lcl|Aclame:pro 436 RE-QITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 436 ~e-~~~~~~~~~~~~~~~~Gs~ 456 (456) .+ +........ ....+|=. T Consensus 420 ~~~q~~~~~~~~--~~~kgGe~ 439 (441) T protein:vir:98 420 DEYQMNKSRATD--KKLKGGEE 439 (441) T ss_pred cccccccccccc--cccCCCCC Confidence 00 000000000 01111111 No 171 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=98.82 E-value=3.5e-08 Score=61.49 Aligned_cols=392 Identities=12% Similarity=0.047 Sum_probs=178.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc------cCcccchhhh--hhh--hhhcCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPE------LTRNTSAAWR--SFQ--REARTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~------~~~~~~~~~~--~~~--~k~~~n~~~~iVd~~~~~ 70 (456) |- +-+...+ +..++.-+.+++..+.|...... .+........ ... .-+.+.-...+|+..++- T Consensus 1 ~~---~~~~~~~----~~~~~g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~ 73 (424) T protein:vir:18 1 ME---EPKYTID----LRTNNGWWARLKSWFVGGRLVTPNQGSQTGPVSAHGYLGDSSINDERILQISTVWRCVSLISTL 73 (424) T ss_pred CC---CCccccc----cCCCCchHHHHHhhccccccccccchhhccccccccccccccccHHHhhccHHHHHHHHHHHHh Confidence 11 1111111 11122223344444444321100 0000000000 000 011122345577888887 Q ss_pred hhcCCcccCC-Ccc---cc--HHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceE Q lcl|Aclame:pro 71 IIPNGITVGG-SAD---SD--LALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETM 138 (456) Q Consensus 71 l~g~~~~~~~-~~d---~~--~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~ 138 (456) +.+-|+.+-. ..+ .. ....+..++.. | .-..+...+...++.+|.||+++-.+.+|++ .+.+++|..+ T Consensus 74 iA~lp~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v 153 (424) T protein:vir:18 74 TACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANM 153 (424) T ss_pred hccCceEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcce Confidence 7777776521 111 01 12234454432 3 2234556778899999999999988888876 4788888888 Q ss_pred EEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe Q lcl|Aclame:pro 139 VVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY 218 (456) Q Consensus 139 ~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 218 (456) .+..+.. ++ .|....++. . ..|.++.+.++... + + T Consensus 154 ~v~~~~~---~~----~y~~~~~g~--~-~~~~~~eVihir~~--------------------------~---------~ 188 (424) T protein:vir:18 154 DVKLVGK---KV----VYRYQRDSE--Y-ADFSQKEIFHLKGF--------------------------G---------F 188 (424) T ss_pred EEEEcCC---eE----EEEEEeCCe--E-EEeccccEEEecCc--------------------------C---------C Confidence 7765432 11 111111111 1 12333444333100 0 0 Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhh-hhhhh--hhccceeecC Q lcl|Aclame:pro 219 QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDY-ASIFE--AAPGALWELP 292 (456) Q Consensus 219 ~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~-~~~~~--~~~~~~~~~~ 292 (456) ....|.|.++.... .+....+-......+|.+ |.-+++-... ...++.-+.+.. ..... ...+++..++ T Consensus 189 dg~~G~spi~~~~~---~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~--~l~~e~~~~~~~~~~~~~~~~nag~~~vl~ 263 (424) T protein:vir:18 189 TGLVGLSPIAFACK---SAGVAVAMEDQQRDFFANGAKSPQILSTGEK--VLTEQQRSQVEENFKEIAGGPVKKRLWILE 263 (424) T ss_pred CCcccccHHHHHHH---HHHHHHHHHHHHHHHHhccCCcceEEEeCCc--CCCHHHHHHHHHHHHHHhCCcccCCceecc Confidence 01125555444332 222222221222223332 3223321111 111222122211 01111 1234567778 Q ss_pred CCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccc-cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 293 PGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKCED-RLSIAKIGLEAILV 369 (456) Q Consensus 293 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~-~~~~f~~~l~~~~~ 369 (456) .+.++..+.... ...|++..+....+||..-++|++.++.... +.+|..++.....+...|-. ..+.+...+.+-+ T Consensus 264 ~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L- 342 (424) T protein:vir:18 264 AGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRWL- 342 (424) T ss_pred CCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc- Confidence 888887665332 2347787888889999999999999974332 22334444333333322211 1112222222111 Q ss_pred HHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-HHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 370 KALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-QDDLDRAREQITLFAGNPVQ 448 (456) Q Consensus 370 l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~~e~~~~~e~~~~~~~~~~~ 448 (456) + ........-+++.+......|.++.++++.++.+.|+++...+++.+|+.|-+-- +.-....--.++.++ ... T Consensus 343 --~-~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~n~~~l~~~~--~~~ 417 (424) T protein:vir:18 343 --I-PSKDVGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGGDVAMRQAQYVPITDLG--TNK 417 (424) T ss_pred --C-CccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCccchhhhh--ccC Confidence 0 0111112234455556667888999999999999999999999999998874221 110000000111121 234 Q ss_pred cccCCCC Q lcl|Aclame:pro 449 RPQEDGS 455 (456) Q Consensus 449 ~~~~~Gs 455 (456) .|..+|+ T Consensus 418 ~~~~n~a 424 (424) T protein:vir:18 418 EPRNNGA 424 (424) T ss_pred CccccCC Confidence 5778888 No 172 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=98.77 E-value=5.6e-08 Score=60.32 Aligned_cols=398 Identities=7% Similarity=-0.027 Sum_probs=165.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSR-VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~-~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) |. .+++++.++....... ...+-+ +-|.. +.-.+.......... -......-.+|+..++-+.+-|+.+. T Consensus 1 ~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~--a~~~~~v~~~v~~ia~~iA~lp~~v~ 71 (460) T protein:vir:10 1 MA-----NRIIRALRELTGLDNKFNDAFIK-YIGQT-FTKYDNNGKTYLEQG--YNINPDVYSCISQMAAKTVAVPYTIK 71 (460) T ss_pred Cc-----hhHHHHHhhhhccCCCchHHHHH-hhccc-cCCCccchhhhhHHH--HhcchHHHHHHHHHHHhhhhCceEEE Confidence 22 2344444332221111 111111 22221 000111111111111 12234566778888888777777652 Q ss_pred CC-ccccH-------------------------------HHHHHHHHHh-c---ChhHHHHHHHHHHhhCCeeEEEEEeC Q lcl|Aclame:pro 80 GS-ADSDL-------------------------------ALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRR 123 (456) Q Consensus 80 ~~-~d~~~-------------------------------~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~a~~~v~~~ 123 (456) .. .+... ......++.+ | .-..+...++...+.+|.||+++-.+ T Consensus 72 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~ 151 (460) T protein:vir:10 72 VVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSP 151 (460) T ss_pred eccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEec Confidence 11 11100 0011122222 2 22345567778899999999998875 Q ss_pred CC----CceE-EEEEccceEEEEeeCCCCceeEE-EEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCC Q lcl|Aclame:pro 124 DD----GTAT-ITADSPETMVVSVDPLQPWRIRA-AMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRIS 197 (456) Q Consensus 124 ~~----g~~~-i~~~~p~~~~~i~d~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (456) .. |.++ +.+++|..+.+..+......... .++.|....+.. ...|.++.+.|+....... T Consensus 152 ~~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~evih~r~~~~~~------------ 217 (460) T protein:vir:10 152 DDGINAGVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQ--FIEFNEDEVIHTKYANPNF------------ 217 (460) T ss_pred CCCccCceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCce--eEEecccceEEEecCCCCc------------ Confidence 43 5553 78888998888765443211111 111222111111 1223344444432110000 Q ss_pred CcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhh Q lcl|Aclame:pro 198 DSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNA 274 (456) Q Consensus 198 ~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~ 274 (456) ..+. ..-.|.|.++.+...+....... .....+|.. |..++. .. ....++.-+. T Consensus 218 --------~~~~---------~~~~G~sp~~~~~~~i~~~~~~~---~~~~~~f~ng~~~~~i~~-~~--~~l~~e~~~~ 274 (460) T protein:vir:10 218 --------DLQG---------SHLYGMSPIRAILRNINSQNSTI---DNNVKTMQNGGVFGFIHG-GS--TGLTQPQADS 274 (460) T ss_pred --------cccc---------CccccccHHHHHHHHHHHHHHHH---HHHHHHHhcCCCcceeee-cC--CCCCHHHHHH Confidence 0000 00125565555444333333222 122223222 222221 11 1111121111 Q ss_pred hhhhhhhh------hhccceeecCCCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccc-cchHHHHH--- Q lcl|Aclame:pro 275 IDYASIFE------AAPGALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAH--- 343 (456) Q Consensus 275 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~Sg~Al~--- 343 (456) +. ..+. ...+.+..++.+.++.++..... ..|++..+....+|+..-++|++.++...+ +.++..++ T Consensus 275 ~~--~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~ 352 (460) T protein:vir:10 275 LK--QRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEER 352 (460) T ss_pred HH--HHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHH Confidence 11 1111 12345667788888877764332 247788888889999999999999874321 11222222 Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCC Q lcl|Aclame:pro 344 --NIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILN 421 (456) Q Consensus 344 --~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~ 421 (456) +....|.-.+...+ ..+.+-+ +.-.+... ...+.|.-.......+...+..+++.+|+++...+++.+| T Consensus 353 ~~f~~~~l~P~~~~ie----~~ln~kl---~~~~~~~~--~~~i~~d~~~l~~l~~d~~~~~~~~~~g~~T~NE~R~~~g 423 (460) T protein:vir:10 353 KRVVTDNIQPDLVILK----QAFDKKF---IKRFKGYE--NAVIEWDISELPEMQTDMVAMASWLNTIPVTPNEIRIAMK 423 (460) T ss_pred HHHHHHHHHHHHHHHH----HHHHHhh---cCcccccC--CceEEeecchhhhHHHHHHHHHHHHhCCCCCHHHHHHHhC Confidence 22222222222222 2222111 00011112 2234443222222233344455677889999999999999 Q ss_pred CCcc--HH-HHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 422 YNAD--QI-KQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 422 ~~~~--~~-~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +.+- +- ++.-.-..-..++.. ........+.+.| T Consensus 424 ~~pi~~~~gD~~~~~~n~~~~~~~-~~~~~~~~~nq~~ 460 (460) T protein:vir:10 424 YETLNQDGMDIVFMPSNKVRIDDV-SNNLIDSAFNQNQ 460 (460) T ss_pred CCCCCCCCCCeeeecccccchhhc-ccccCCCcccCCC Confidence 8763 11 111000000001111 1122233344455 No 173 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=98.76 E-value=6e-08 Score=60.16 Aligned_cols=373 Identities=14% Similarity=0.047 Sum_probs=156.9 Q ss_pred CCCCCHHHHHHHHHHHHHHH--HHHH-HHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDG--MSRV-RLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGIT 77 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~--~~~~-~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~ 77 (456) |-=.+.- ...+...+ .... .....+.-|..... .+.. ..-+.+.-...+|+..++-+..-|++ T Consensus 1 Mg~~~~~-----~~~k~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~-----~~~l~~~~v~~~i~~ia~~ia~~~~~ 66 (383) T protein:vir:10 1 MGLLTPK-----NFSKRNAKNMVYPSNPAFFTTTVGGMQLS----YVSA-----LSALQNTNVYSVINRIASDVSSAHFK 66 (383) T ss_pred CCccccc-----ccccccccccccccchhhhhhhccCcccc----ccch-----hHhhcchHHHHHHHHHHHhhccCcee Confidence 2211110 00000000 0000 00011111110000 0100 00122233456778888877777887 Q ss_pred cCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEE Q lcl|Aclame:pro 78 VGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWW 157 (456) Q Consensus 78 ~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 157 (456) +..... ...+.+-........+...+..+++.+|.||+++..+. ..+...+|.++.+..+.. . + +..+ T Consensus 67 ~~~~~~---~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~~---~~~~p~~~~~v~~~~~~~--~-~---~~~~ 134 (383) T protein:vir:10 67 TENTAT---LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G-I---VYTV 134 (383) T ss_pred ecccch---hhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc---eeEeecCcceEEEEEcCC--c-e---EEEE Confidence 643221 11122111111334566778888889999999875432 223333444433333211 1 0 0111 Q ss_pred EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 158 RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRI 237 (456) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~ 237 (456) ....+ . ....|.++.+.|+.... ++. ++-..|.|.++..+..++.. T Consensus 135 ~~~~~-~-~~~~~~~~evih~r~~~------------------------------~~~--~~~~~G~s~l~~~~~~i~~~ 180 (383) T protein:vir:10 135 LESND-R-PKMVLRQDQMLHFRLMP------------------------------DPQ--YRYLIGRSPLESLQNALNLD 180 (383) T ss_pred EEcCC-c-eEEEEcccceEEeccCC------------------------------CCc--ccccccccHHHHHHHHHHHH Confidence 11111 1 11122333333321000 000 00013667666655555544 Q ss_pred HHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh-hh-hh-hhhccceeecCCCcceeeccc--cchHHHHHHH Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY-AS-IF-EAAPGALWELPPGVDIWESQA--NDFTPMLSAI 312 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 312 (456) ..+..-......-.+.|..++.-.. . ...++.-..+.. .. .. ....+++..++.+.++..+.. .+.+.+.+.. T Consensus 181 ~~~~~~~~~~f~ng~~~~~il~~~~-~-~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~ 258 (383) T protein:vir:10 181 DKASKSNMSAMENQINPAGKLTISN-Y-LSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNS 258 (383) T ss_pred HHHHHHHHHHHhccCCcceEEEeCC-C-CCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHH Confidence 4333222222222222333332111 0 001111111110 00 01 122345677788888876653 3334345677 Q ss_pred HHHHHHHHhhcCCChhhhccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCC Q lcl|Aclame:pro 313 KEHIRQLSSATKTPLPMLMPD-SANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPD 391 (456) Q Consensus 313 ~~~~~~i~~~t~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~ 391 (456) +....+|+..-++|++.++.. .++.++..++....-...-+.-..+.+...+.+ .+.+ ..+++.+.+.. T Consensus 259 ~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~------~l~~----~~~~f~~~~l~ 328 (383) T protein:vir:10 259 AYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRL------KMNA----PDLELDIKDML 328 (383) T ss_pred HHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH------hhCC----ceEEeechhhh Confidence 777899999999999999753 222222222111111111111111111122211 1122 23566667777 Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 392 RVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 392 ~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ..|..+.++++.++.++|+++...+++.+|+.+-+-..+.. ......|..+|-. T Consensus 329 ~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~-----------~~~~~~~~~gGd~ 382 (383) T protein:vir:10 329 DVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPE-----------FKPLTNETKGGDD 382 (383) T ss_pred ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCcccc-----------cCCCcccCCCCCC Confidence 88999999999999999999999999998876532111100 0011112233333 No 174 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=98.73 E-value=7.5e-08 Score=59.65 Aligned_cols=390 Identities=9% Similarity=0.020 Sum_probs=169.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-cccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPL-PELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i-~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) |.. +.++.++.+..-... +.+-..+-++. .+.+........ +.-....-...+|+..+.-+..-|+.+. T Consensus 1 ~~~---~~~~~~~k~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~--~~a~~~~~V~~ci~~ia~~ia~lp~~~~ 70 (409) T protein:vir:96 1 MAK---ENIVTRIKKKLIDNW-----IDQSASKLYDFSPWKNKSFWGVIN--NTLETNETIFSAITKLSNSMASLPLKMY 70 (409) T ss_pred Ccc---ccchhhhhhHHhhhh-----hccccccccccccccCccccccch--hhHhhhHHHHHHHHHHHHhhhhCceEEe Confidence 332 233333322211100 00000111111 011111100000 0012233446677777777777777653 Q ss_pred CCccccHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEE Q lcl|Aclame:pro 80 GSADSDLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAA 153 (456) Q Consensus 80 ~~~d~~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) ...+ .....+..++.. |. -..+...++.+.+.+|.||+++-.+..|.+ .+.+++|..+.++.++... .+ T Consensus 71 ~~~~-~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~-~~--- 145 (409) T protein:vir:96 71 EDYK-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-EL--- 145 (409) T ss_pred eccc-ccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCc-EE--- Confidence 2221 222334444432 32 234557788889999999999988889976 5788899988888765432 11 Q ss_pred EEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHH Q lcl|Aclame:pro 154 MRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDI 233 (456) Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~l 233 (456) +|......+.. ..|.++.+.|+.. .++ .+.-.|.|.++..... T Consensus 146 --~y~~~~~~g~~-~~~~~~evih~r~-------------------------------~~~---~~~~~G~s~l~~~~~~ 188 (409) T protein:vir:96 146 --YYSIHAATGNK-LIVHNMDMLHFKH-------------------------------IVA---SNMVQGISPIDVLKNT 188 (409) T ss_pred --EEEEEcCCceE-EEEccccEEEeCC-------------------------------CCC---CCccccccHHHHHHHH Confidence 11111111111 1233333333311 000 0011366665554444 Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhh--cCCCccccccccchhhhhh-hhhhhhhccceeecCCCcceeeccccch-HHHH Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAFRQRAL--KSTEHGLPNVDENGNAIDY-ASIFEAAPGALWELPPGVDIWESQANDF-TPML 309 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~~~~~i--~G~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 309 (456) ++..+... +. . ...+..+-.++ .+... .++.-+.+.. ....-...+.+..++.+.++.++..... ..|+ T Consensus 189 i~~~~~~~-~~-~-~~~~~~~~~~i~~~~~~l----~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~ 261 (409) T protein:vir:96 189 TDFDNAVR-TF-N-LTEMQKPDSFMLKYGSNV----STEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIV 261 (409) T ss_pred HHHHHHHH-HH-H-HHhcCCCceeEEecCCCC----CHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHH Confidence 43322211 11 1 11111111111 11111 1111111111 1111124456777888888877653322 2467 Q ss_pred HHHHHHHHHHHhhcCCChhhhccccc-c-chHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceE Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSA-N-QSAEGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDV 385 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~-n-~Sg~Al--~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v 385 (456) +..+....+|+..-++|++.++.... + .+.+.. .+....|.-.+...+ ..+.+-+ +.-.+......+++ T Consensus 262 e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~~~f~~~~l~P~~~~ie----~~l~~~L---l~~~~~~~g~~i~f 334 (409) T protein:vir:96 262 ASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYE----EEFNRKL---LTKTDREKNRYFKF 334 (409) T ss_pred HHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHH----HHHHhhc---CCcccccCcceEEe Confidence 77777888999999999999975321 2 122211 122222222221111 1111110 00011111222333 Q ss_pred EecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHH-HHHHHHHHHHHHhhc-ccccccCCCCC Q lcl|Aclame:pro 386 SFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD-DLDRAREQITLFAGN-PVQRPQEDGSR 456 (456) Q Consensus 386 ~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~-e~~~~~e~~~~~~~~-~~~~~~~~Gs~ 456 (456) ......-.+..+.++++.+++++|+++.-.+++.+|+.|-+--+. -....--.++..... .....+++.++ T Consensus 335 d~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~~~~gG~~n~~ 407 (409) T protein:vir:96 335 NVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVN 407 (409) T ss_pred echhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcceeeecccccccccchhhcccccCCCCCcC Confidence 333445668889999999999999999999999999876421110 000000000000000 00111111111 No 175 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=98.73 E-value=7.9e-08 Score=59.53 Aligned_cols=380 Identities=13% Similarity=0.018 Sum_probs=175.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) -..+||..|..-|...-.-...++..+.+.++- ......-+++....-+.+.++++.. T Consensus 37 ~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e----------------------~D~~i~s~l~~Rk~av~~~~w~I~p 94 (528) T protein:vir:10 37 AKGLTPAKLAHILIEAEQGHLQAQAELFMDMEE----------------------RDAHLFAEMSKRKRAVLGLDWTIEP 94 (528) T ss_pred CCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHh----------------------hChHHHHHHHHHHHHHhcCCceEec Confidence 223344443333222221112222222111100 1335566667777777788887743 Q ss_pred Cccc-----cHHHHHHHHHHh-cChhHHHHHHHHHHhhCCeeE-EEEEeCCCCceEEEE---EccceEEEEeeCCCCcee Q lcl|Aclame:pro 81 SADS-----DLALRARRIWRD-NRMDSVCKQWVKYGLDFGESY-LTCWRRDDGTATITA---DSPETMVVSVDPLQPWRI 150 (456) Q Consensus 81 ~~d~-----~~~~~l~~~~~~-n~~~~~~~~~~~~~~~~G~a~-~~v~~~~~g~~~i~~---~~p~~~~~i~d~~~~~~~ 150 (456) ..++ ...+.+.+.+.+ ..|+..+..+ .++.-||.+. +++|.-.+|...+.. ++|+. | .+++..+.. T Consensus 95 ~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~-lda~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~~-f-~~~~~~~~~- 170 (528) T protein:vir:10 95 PRNASAAEKADAEYLHELLLDLEGIEDLMLDC-MDGVGHGYSAIELDWSLQGREWLPQAFDHRPQSW-F-QLNPDDQDE- 170 (528) T ss_pred CCCCCHHHHHHHHHHHHHHhCCccHHHHHHHH-HhhhhhcceeEEEEEeecCCceeEEEeeeecccc-e-eeccCCCcE- Confidence 3221 223345555544 2466666555 4577799874 567876666554333 33321 1 122221110 Q ss_pred EEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEE---ecCCCCCchH Q lcl|Aclame:pro 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVV---YQNPDGMGEV 227 (456) Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~---~~n~~~~s~~ 227 (456) ++. . ++...-..+. .++.+...+ ..|+.|.|.+ T Consensus 171 ---l~~-~--~~~~~g~~l~--------------------------------------~~k~iv~~~~~~~g~p~g~gLl 206 (528) T protein:vir:10 171 ---LRL-R--DNSIAGEVLQ--------------------------------------PFGWIMHKPRSRSGYVARSGLF 206 (528) T ss_pred ---Eec-c--CCCCCceeec--------------------------------------CCCeEEEeecCCCCCccccchH Confidence 000 0 0000000000 011111111 1356788888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcce--eeccccch Q lcl|Aclame:pro 228 EPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDI--WESQANDF 305 (456) Q Consensus 228 ~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 305 (456) ..+.-..--=+..+.+.+..++.|+.|.++.+=.... .+++.+.+.. .......+....++.+.++ .+...... T Consensus 207 r~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a---~~~ek~~L~~-al~~i~~~~~~iiP~~~~ie~~ea~~~~~ 282 (528) T protein:vir:10 207 RVLAWPYLFKHYSTADLAEMLEIYGLPIRLGKYPPGT---PDEEKVTLLR-AVTGLGHAAAGIIPESMSIDFQEASKGSA 282 (528) T ss_pred HHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCCC---CHHHHHHHHH-HHHHHhhCcEEEecCCceeEEeecCCCCh Confidence 7764433333445777888889999998776521110 1222222211 1122233344455655554 33333445 Q ss_pred HHHHHHHHHHHHHHHhhcCCChhhhcc-cccc-chHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCc-- Q lcl|Aclame:pro 306 TPMLSAIKEHIRQLSSATKTPLPMLMP-DSAN-QSAEGA-HNIEKGFLFKCEDRLSIAKIGLE-AILVKALQIEGESV-- 379 (456) Q Consensus 306 ~~~~~~~~~~~~~i~~~t~~p~~~~~~-~~~n-~Sg~Al-~~~~~~l~~k~~~~~~~f~~~l~-~~~~l~~~~~g~~~-- 379 (456) ..|...++.+-++|++..-- ..+.. .+++ .+.-|+ .....-....++.-.+.+...+. ++++-++.+..... T Consensus 283 ~~f~~li~~~d~~Isk~iLG--qtlTs~~~~g~~gS~Alg~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~ 360 (528) T protein:vir:10 283 EPFMAMMRWCDDSMSKAILG--GTLTSQTSESGGGAYALGQVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLD 360 (528) T ss_pred hHHHHHHHHHHHHHHHHHhh--hhhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC Confidence 66788888888888764411 11111 1111 111222 12222333344444466666774 46776776664322 Q ss_pred -cccceEEecCCCCCCHHHHHHHHHHHHhcCC-CcHHHHHHhCCCCccHH-HHHHHHHHHHHHHHHhhccc----ccccC Q lcl|Aclame:pro 380 -EDTVDVSFESPDRVTLGEKYSAASLAKAAGE-SWASIRRNILNYNADQI-KQDDLDRAREQITLFAGNPV----QRPQE 452 (456) Q Consensus 380 -~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~-~s~~t~~~~~~~~~~~~-~~~e~~~~~e~~~~~~~~~~----~~~~~ 452 (456) ..-.++.|....+.+..+.++++.+|+..|+ ++.+.+.+.+|+...+. ++................+. ..+.. T Consensus 361 ~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (528) T protein:vir:10 361 ARRAPRLVFDLKDRADLAAMATSLPPLVKLGVQVPVNWVQEQLGIPLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQV 440 (528) T ss_pred ccccceEEecCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCCcccccCCCcccccccCccccccccccccc Confidence 2234678888999999999999999999998 89999999999853211 11110000000000000000 00000 Q ss_pred CCCC Q lcl|Aclame:pro 453 DGSR 456 (456) Q Consensus 453 ~Gs~ 456 (456) .+.+ T Consensus 441 ~~~~ 444 (528) T protein:vir:10 441 IGPR 444 (528) T ss_pred cccc Confidence 0000 No 176 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=98.72 E-value=7.7e-08 Score=59.57 Aligned_cols=392 Identities=10% Similarity=-0.048 Sum_probs=156.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC---CCc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARY-SNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG---GSA 82 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~Y-Y~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~---~~~ 82 (456) +-|+++|.. +.......... ..|. +...............--..+.....+|+.+++-+..-|+.+- .+. T Consensus 1 Mg~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~dg 74 (423) T protein:vir:81 1 MGFLQKLGL----APSVVATPEPIELVGP--IFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVEDG 74 (423) T ss_pred CchhHhhcc----ccccccCccccccccc--cccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecCC Confidence 334444311 00000000000 0000 0000000000000000001234667888888888887787641 111 Q ss_pred ccc--HHHHHHHHHHh-c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEcc---ceEEEEeeCCCCceeEEE Q lcl|Aclame:pro 83 DSD--LALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSP---ETMVVSVDPLQPWRIRAA 153 (456) Q Consensus 83 d~~--~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p---~~~~~i~d~~~~~~~~~~ 153 (456) +.+ ....+..++.+ | ....+...+..+.+.+|.||+++..+..+...+..+.| ..+.+..+......+... T Consensus 75 ~~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y~ 154 (423) T protein:vir:81 75 GRERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDYI 154 (423) T ss_pred ceeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEEE Confidence 111 12224444433 2 23455567778889999999998776544333333333 222221110000011000 Q ss_pred EEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC-CCCCchHHHHHH Q lcl|Aclame:pro 154 MRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN-PDGMGEVEPHID 232 (456) Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n-~~~~s~~~~v~~ 232 (456) +.......+... .+.++.+.|+... + .+. ..|.|.+..+.. T Consensus 155 --~~~~~~~~g~~~-~~~~~evih~r~~--------------------------~---------~~~~~~G~spi~~~~~ 196 (423) T protein:vir:81 155 --IIESGDNDGRSV-KVPGERVIHRHGY--------------------------N---------PKTMKRGKSPVQSLRD 196 (423) T ss_pred --EEEecCCCceEE-EEcccceEEecCC--------------------------C---------CCCccccccHHHHHHH Confidence 000000011111 1112222222100 0 001 136665554443 Q ss_pred HHHHHHHHHHHHHHHHHHHhh---hHHhhcCCC--ccccccccchhhhhhh--hh---hhhhccceeecCCCcceeeccc Q lcl|Aclame:pro 233 IINRINRAELQLLSTMAIQAF---RQRALKSTE--HGLPNVDENGNAIDYA--SI---FEAAPGALWELPPGVDIWESQA 302 (456) Q Consensus 233 liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~--~~~~~~d~~g~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~ 302 (456) .++... +-......+|.+ |-.+++-.. ......++....+... .. .....|++..++.+.++..+.. T Consensus 197 ~i~~~~---~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~ 273 (423) T protein:vir:81 197 ILGEQI---EAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHT 273 (423) T ss_pred HHHHHH---HHHHHHHHHHhccCCCceEEEecCcccCccCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccC Confidence 333332 222223334433 333332111 0000111111111110 01 1122456777888888877654 Q ss_pred cchH-HHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC--C Q lcl|Aclame:pro 303 NDFT-PMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGE--S 378 (456) Q Consensus 303 ~~~~-~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~--~ 378 (456) ++.+ .|++..+....+|+++-++|++.+|.. ++.+...++.....+...| .-+.+.+...|.+. +... . T Consensus 274 s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~-~~~t~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~------L~~~~~~ 346 (423) T protein:vir:81 274 TSKDEQTVETTKLSLQTVAQVYGINPTMVGQL-DNANYSNVREFRKALYGDNLGSWIRIIQDVMNLF------LLPRVGI 346 (423) T ss_pred ChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCC-CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhh------hcCcccc Confidence 3322 467777788889999999999998742 2222222222222222211 11111122222111 1111 1 Q ss_pred ccccceEEe--cCCCCCCHHHHHHHHHHHH-hcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 379 VEDTVDVSF--ESPDRVTLGEKYSAASLAK-AAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 379 ~~~~i~v~f--~~~~~~~~~e~ad~~~kl~-~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs 455 (456) +.....+.| ......|..+++++..++. ++|+++.-.+++.+|+.|.+--+ ..--..+....+..+.|+++.. T Consensus 347 ~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R~~~gl~p~~gGD----~~~~p~n~~~~~~~~~~~~~~~ 422 (423) T protein:vir:81 347 DNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVRAMDNLPSIDGGD----DLARPLNTEFGDSEDAPGEEVE 422 (423) T ss_pred ccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCCCCcc----eeecccccccCccCCCCCCCCC Confidence 112223444 4445678888888888876 56999988899999987643111 0000001001111111121111 Q ss_pred C Q lcl|Aclame:pro 456 R 456 (456) Q Consensus 456 ~ 456 (456) . T Consensus 423 t 423 (423) T protein:vir:81 423 T 423 (423) T ss_pred C Confidence 1 No 177 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=98.69 E-value=1.1e-07 Score=58.84 Aligned_cols=371 Identities=13% Similarity=0.027 Sum_probs=155.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH-HH---HHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSR-VR---LLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~-~~---~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~ 76 (456) |. |+.++.......... +. ....+.-|.-. ...+.. . .-+...-...+|+.+++-+..-|+ T Consensus 1 Mg------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~---~--~al~~~~v~~~i~~ia~~ia~~p~ 65 (385) T protein:vir:10 1 MG------LLTPRNFNKRKAKNMVYPSNPAFFTTTVGGMQ----LSYVSA---L--SALQNTNVYSVINRIASDVASAHF 65 (385) T ss_pred Cc------cccchhcccccccccccccchhhhhhhccccC----ccccCH---H--HhhccHHHHHHHHHHHHHHhhCce Confidence 22 222111000000000 00 00011111000 001111 0 012223345678888888878888 Q ss_pred ccCCCccccHHHHHHHHHHh-c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEE Q lcl|Aclame:pro 77 TVGGSADSDLALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRA 152 (456) Q Consensus 77 ~~~~~~d~~~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~ 152 (456) ++.... . ..++.+ | .-..+...+..+.+.+|.||+++..+. ..+...++..+.+..+.. . T Consensus 66 ~v~~~~---~----~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~---~~~~p~~~~~v~~~~~~~--~---- 129 (385) T protein:vir:10 66 KTENTA---T----LNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM--G---- 129 (385) T ss_pred eeeccc---h----hhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc---eeEeecCCceEEEEEcCC--c---- Confidence 874321 1 122222 3 234555667778888999999886542 223333444443333221 0 Q ss_pred EEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHH Q lcl|Aclame:pro 153 AMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHID 232 (456) Q Consensus 153 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~ 232 (456) ...++....+.. ...|.++.+.|+.... ++. +....|.|.++.... T Consensus 130 ~~~~~~~~~~~~--~~~~~~~eiihik~~~------------------------------~~~--~~~~~G~s~i~~~~~ 175 (385) T protein:vir:10 130 IVYTVLESNDRP--QMVLRQDQMLHFRLMP------------------------------DPQ--YRYLIGRSPLESLQN 175 (385) T ss_pred eEEEEEEcCCce--EEEEccccEEEeccCC------------------------------CCc--ccccccccHHHHHHH Confidence 011111111111 1123333333332100 000 001136676666555 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh-hh-hh-hhhccceeecCCCcceeecccc--chHH Q lcl|Aclame:pro 233 IINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY-AS-IF-EAAPGALWELPPGVDIWESQAN--DFTP 307 (456) Q Consensus 233 liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~ 307 (456) .++.......-..+.....+.|.-+++-... ...++.-+.+.. .. .. ....+++..++.+.++..+... +.+. T Consensus 176 ~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~--~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~ 253 (385) T protein:vir:10 176 ALNLDDKASKSNMSAMENQINPAGKLTISNY--LSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKA 253 (385) T ss_pred HHHHHHHHHHHHHHHHhccCCcceEEEeCCC--CCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHH Confidence 5544433322222211222223333321110 001111111110 01 11 1123456777888888766543 3343 Q ss_pred HHHHHHHHHHHHHhhcCCChhhhccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEE Q lcl|Aclame:pro 308 MLSAIKEHIRQLSSATKTPLPMLMPD-SANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVS 386 (456) Q Consensus 308 ~~~~~~~~~~~i~~~t~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~ 386 (456) +.+..+....+|+.+-++|++.++.. .++.++..+.....-...-+.-..+.+...+.+- +.+ ..+++. T Consensus 254 l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~------l~~----~~~~f~ 323 (385) T protein:vir:10 254 LADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLK------MNA----PDLELD 323 (385) T ss_pred HHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHh------hCC----ceEEee Confidence 45777888899999999999999753 3333322222111111111111222222222211 112 135555 Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCC Q lcl|Aclame:pro 387 FESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQED 453 (456) Q Consensus 387 f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~ 453 (456) +.+....+..+.++++.++++.|+++...+++.+|+.+-....+..-. - .....-+.+..++ T Consensus 324 ~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~~--~---~~~~~~~g~~~dn 385 (385) T protein:vir:10 324 IKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFK--P---LTTQVKGGDEGDN 385 (385) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCcccc--C---cccccCCCCCCCC Confidence 566667889999999999999999999888888765431111110000 0 0000011111222 No 178 >protein:vir:95821 Length: 763 # NCBI annotation: 94 kDa protein # Family: family:all:1548 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950537;genbank:gi:119952228;genbank:GeneID:5075648 Probab=98.67 E-value=1.3e-07 Score=58.37 Aligned_cols=418 Identities=14% Similarity=0.068 Sum_probs=161.1 Q ss_pred CCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHH--hhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRID-------DGMSRVRLLARY--SNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRI 71 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~-------~~~~~~~~~~~Y--Y~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l 71 (456) ++.-+-+.++..|.+.+. ..+.+.....+| |+|+.+-+ ... ++. +++..-.+..|+.....| T Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---grs--~vv~~~v~~~ve~~~~~l 90 (763) T protein:vir:95 20 LTSWKNELSLQALKADLDAAKPSHTAMMIKVKEWNDLMRIEGKAKPP----KVK---GRS--QVQPKLVRRQAEWRYSAL 90 (763) T ss_pred CCCCCChHHHHHHHHHHHhhhcchhHHHHHHHHHHHhhhccccCccc----ccC---CCc--cccCHHHHHHHHHHHHHH Confidence 222222344444444332 222233334444 45543211 111 122 355555555555554444 Q ss_pred h----cC-C-ccc--CCCccccHHHHHH-----HHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC--------------- Q lcl|Aclame:pro 72 I----PN-G-ITV--GGSADSDLALRAR-----RIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR--------------- 123 (456) Q Consensus 72 ~----g~-~-~~~--~~~~d~~~~~~l~-----~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~--------------- 123 (456) . +. . |.+ ...+|.+..+..+ .++..|+=......++++++++|.+++.||-+ T Consensus 91 ~~~f~~~~~~~~~~P~~~~D~~~A~q~t~~~n~~~~~~~~~~~~~~~~~~~~l~~~~gv~k~~W~~~~~~~~~~~~~~~~ 170 (763) T protein:vir:95 91 TEPFLGSNKLFKVTPVTWEDVQGARQNELVLNYQFRTKLNRVSFIDNYVRSVVDDGTGIVRVGWNREIRKEKQEVPVFSL 170 (763) T ss_pred HHhhcCCCcEEEEecCCcchHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhcCcceEEEeeeeeeeeeeeeehhhhh Confidence 2 22 1 222 2344544444333 24556666667789999999999998776521 Q ss_pred ------------------------------------------C---------------------CCceEEEEEccceEEE Q lcl|Aclame:pro 124 ------------------------------------------D---------------------DGTATITADSPETMVV 140 (456) Q Consensus 124 ------------------------------------------~---------------------~g~~~i~~~~p~~~~~ 140 (456) + .+.|+|..++|+++++ T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~p~ie~V~p~d~~i 250 (763) T protein:vir:95 171 FPIQTQEQADALQQALQLRTDNPRGYEENVDEAIKESVRFFDETGQATYAVQTGTTTTEVEVPLANHPTVEMLNPENIII 250 (763) T ss_pred ccccchhHHHHHHHHHHhhhhhhccccccccchhhhhhhhccccCcceeeecccceeEEEEEEecCceEEEeecHHHhee Confidence 0 1345777899998875 Q ss_pred EeeCCCC-ceeEE-EEEEEEecC-----Cc------------------eeEE-----E-EEeC---Ce--EEEEEEcccc Q lcl|Aclame:pro 141 SVDPLQP-WRIRA-AMRWWRDLD-----AE------------------SDFA-----I-VWSG---DG--WQKFARPCFV 184 (456) Q Consensus 141 i~d~~~~-~~~~~-~i~~~~~~~-----~~------------------~~~~-----~-~~~~---~~--~~~~~~~~~~ 184 (456) -.+-..+ ....+ +.+.+.... +. ..+. . -+.. .. ++.+...... T Consensus 251 Dp~a~sD~~Da~~~~~~~~~t~~dL~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~V~v~E~y~~~d~ 330 (763) T protein:vir:95 251 DPSCQGDINKAMFAIVSFETCKADLLKEKDRYHNLNKIDWQSSAPVNEPDHATTTPQEFQISDPMRKRVVAYEYWGFWDI 330 (763) T ss_pred cCCCCCchhhCceEeeEEeccHHHHHhccCCccccchhcchhccccccccccccchhhccCCCcccceEEEEEeeeeecc Confidence 4321111 11111 222221100 00 0000 0 0000 00 1111111100 Q ss_pred c--ccccceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 185 Q--SSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQR 256 (456) Q Consensus 185 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~ 256 (456) . .......+....+........+...+.+|++.+ .+.+|.|.++.++++++.+|..++.+.+.+...+.+.. T Consensus 331 ~gdg~~~~~~v~~~g~~iL~~~~~p~~~~~~PFv~~~~~p~~~~~~G~gi~~~~~d~Qr~~N~~~~~~~d~l~~~~~~~~ 410 (763) T protein:vir:95 331 EGNGVLEPIVATWIGSTLIRLEKNPYPDGKLPFVLIPYMPVKRDMYGEPDAELLGDNQAVLGAVMRGMIDLLGRSANGQR 410 (763) T ss_pred CCcceeEEEEEEEEcCeeeecccccccCCCcCEEEecceeecCcccCCchHHHhhHHHHHHHHHHHHHHHHHHhhcCCcE Confidence 0 000111111111222222223333344444322 34578999999999999999999999999888777743 Q ss_pred hhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcce------eecccc--chHHHHHHHHHHHHHHHhhcCCChh Q lcl|Aclame:pro 257 ALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDI------WESQAN--DFTPMLSAIKEHIRQLSSATKTPLP 328 (456) Q Consensus 257 ~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~i~~~t~~p~~ 328 (456) .+ . .+.. + ..+.+...+|.++...++.+. ..++.. .....+.+++... -..||++.. T Consensus 411 ~v-~--~gav--~-------~~d~~~~~pg~v~~v~~g~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~---e~~TGv~~~ 475 (763) T protein:vir:95 411 GM-P--KGML--D-------ALNSRRYREGEDYEYNPTQNPAQMIIEHKFPELPQSALTMATLQNQEA---ESLTGVKAF 475 (763) T ss_pred Ee-e--cccc--c-------chhhhcccCCceEEeeCCCChhhhcccccCCCCcchHHHHHHHHHHHH---HHhhCcchh Confidence 22 1 1111 0 011112234444443333221 112211 2233344444443 344666655 Q ss_pred hhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCcc-------------------ccc Q lcl|Aclame:pro 329 MLMPD--SANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQ----IEGESVE-------------------DTV 383 (456) Q Consensus 329 ~~~~~--~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~----~~g~~~~-------------------~~i 383 (456) ..|.. ..|..+.++......-........+.|..+++.+.+.++. +.+.... +++ T Consensus 476 ~~G~~~~~~~~tat~v~~l~qa~~~~~~~~~r~~~~~~k~l~~~~l~Li~q~~d~~rviRI~g~e~v~v~~~~~~~~~DV 555 (763) T protein:vir:95 476 AGGVTGESYGDVAAGIRGVLDAASKREMAILRRLAKGMSEIGNKIIAMNAVFLAEHEVVRITNEEFVTIKREDLKGNFDL 555 (763) T ss_pred hcCcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCccccccHHHhcCCcce Confidence 44422 1122222232233333333344455666666655554443 3221100 111 Q ss_pred eEEecCCCCCCH-HHHHHHHHHHHhcCCCcHHHHHHhCC-CCccHHHHH------HHHHHHHHHHHHhhc-ccccccCC- Q lcl|Aclame:pro 384 DVSFESPDRVTL-GEKYSAASLAKAAGESWASIRRNILN-YNADQIKQD------DLDRAREQITLFAGN-PVQRPQED- 453 (456) Q Consensus 384 ~v~f~~~~~~~~-~e~ad~~~kl~~~g~~s~~t~~~~~~-~~~~~~~~~------e~~~~~e~~~~~~~~-~~~~~~~~- 453 (456) .+.- .+.+. .+.+..+..+. ..++ -.+...... +..+..+....+... +.+.|... T Consensus 556 ~V~~---~~as~~~q~~~~l~~ll-----------~~l~~~~~~~~~~~il~~~~d~~~~~~~~~~lr~~q~~~d~~~q~ 621 (763) T protein:vir:95 556 EVDI---STAEVDNQKSQDLGFML-----------QTIGPNVDQQITLNILAEIADLKRMPKLAHDLRTWQPQPDPVQEQ 621 (763) T ss_pred EEec---ccchHHHHHHHHHHHHH-----------HHhccccChHHHHHHHHHHHhhhchhhhHHHHHhcCCCccchhhh Confidence 1111 11121 11122122111 1111 011111111 111111111111111 11111110 Q ss_pred CCC Q lcl|Aclame:pro 454 GSR 456 (456) Q Consensus 454 Gs~ 456 (456) -++ T Consensus 622 qaq 624 (763) T protein:vir:95 622 LKQ 624 (763) T ss_pred HHH Confidence 011 No 179 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=98.66 E-value=1.3e-07 Score=58.32 Aligned_cols=370 Identities=13% Similarity=0.022 Sum_probs=158.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCC----c Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGS----A 82 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~----~ 82 (456) +-+..+|.++...-. +..+.+ ..+.......+....... ..+.-...+|+..++-+..-|+++... . T Consensus 1 mg~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~t~~~~--~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~~ 71 (403) T protein:vir:10 1 MGFKSWITEKLNPGQ----RIIRDM---EPVSHRTNRKPFTTGQAY--SKIEILNRTANMVIDSAAECSYTVGDKYNIVT 71 (403) T ss_pred Ccchhhhhhccchhh----hhhhcc---cccccccCCcccccHHHH--HHHHHHHHHHHHHHHHHhhCceeEeecccccc Confidence 334455544432111 111111 111111111110000100 111223455666666666666654211 1 Q ss_pred cc--cHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEE Q lcl|Aclame:pro 83 DS--DLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMR 155 (456) Q Consensus 83 d~--~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) +. .....+..++.. |. -..+...++..++.+|.||+++- +. .+..++|..+.+..+.. . .+. T Consensus 72 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~----~~-~l~~l~~~~~~v~~~~~-~-----~~~ 140 (403) T protein:vir:10 72 YANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWD----GT-SLYHVPAALMQVEADAN-K-----FIK 140 (403) T ss_pred cccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEe----Cc-eeEeecCcceEEEEcCC-c-----eEE Confidence 11 111224444443 32 23555677788889999997652 11 24455555554433221 1 011 Q ss_pred EEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe-cCCCCCchHHHHHHHH Q lcl|Aclame:pro 156 WWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDII 234 (456) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~-~n~~~~s~~~~v~~li 234 (456) ++.... . .-|..+++. |+-...++.+. ....|.|.+..+...+ T Consensus 141 ~~~~~~--~---~~~~~~eii-------------------------------h~~~~~~~~~~~~~~~G~s~i~~~~~~i 184 (403) T protein:vir:10 141 KFIFNN--Q---INYRVDEII-------------------------------FIKDNSYVCGTNSQISGQSRVATVIDSL 184 (403) T ss_pred EEEecC--c---eeecccceE-------------------------------EecccccccCCCCCcccccHHHHHHHHH Confidence 110000 0 001111111 11111111111 1224666665555444 Q ss_pred HHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh------hhccceeecCCCcceeeccc--- Q lcl|Aclame:pro 235 NRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE------AAPGALWELPPGVDIWESQA--- 302 (456) Q Consensus 235 D~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--- 302 (456) +....+..- ...+|.+ |..++..... ..++.-..+. ..|. ...++.+.++.+.++..+.. T Consensus 185 ~~~~~~~~~---~~~~f~ng~~~~gil~~~~~---l~~e~~~~~~--~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~ 256 (403) T protein:vir:10 185 EKRSKMLNF---KEKFLDNGTVIGLILETDEI---LNKKLRERKQ--EELQLDYNPSTGQSSVLILDGGMKAKPYSQISS 256 (403) T ss_pred HHHHHHHHH---HHHHHhccCCcceEEEeCCC---CCHHHHHHHH--HHHHHHhCCcccCcceeecCCCceeEEecccCC Confidence 444333222 2233333 3333332111 1111111111 1121 12345677788877766542 Q ss_pred -cchHHHHHHHHHHHHHHHhhcCCChhhhcc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 303 -NDFTPMLSAIKEHIRQLSSATKTPLPMLMP-DSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVE 380 (456) Q Consensus 303 -~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~-~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~ 380 (456) .++ -|++..+....+||.+-++|++.++. ..+|.+...+.+....+.-.+...+..+...| + T Consensus 257 ~~d~-q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~~L-----------~---- 320 (403) T protein:vir:10 257 FKDL-DFKEDIEGFNKSICLAFGVPQVLLDGGNNANIRPNIELFYYMTIIPMLNKLTSSLTFFF-----------G---- 320 (403) T ss_pred HHHH-HHHHHHHHHHHHHHHHhCCCHHHcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------C---- Confidence 232 36787888889999999999999963 23344343444444444444444333333222 2 Q ss_pred ccceEEecCC--CCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHH-HHHHHH-HhhcccccccCCCC- Q lcl|Aclame:pro 381 DTVDVSFESP--DRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRA-REQITL-FAGNPVQRPQEDGS- 455 (456) Q Consensus 381 ~~i~v~f~~~--~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~-~e~~~~-~~~~~~~~~~~~Gs- 455 (456) ..+.+.+... .-.+....++++.++++.|+++...+++.+|+.|-+.+....-.. .+.... .....++..+++++ T Consensus 321 ~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~~~d~~~~p~n~~~~~~~~~~~e~~~~~~~~ 400 (403) T protein:vir:10 321 YKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSELNLEPLDDEQMNKIRIPANVAGSATGVSGQEGGRPKGST 400 (403) T ss_pred ceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCcccccccccccccccccccCCCCcCCCCCCCc Confidence 1233333322 344677788999999999999999999999988743221111100 000000 00001111111112 Q ss_pred C Q lcl|Aclame:pro 456 R 456 (456) Q Consensus 456 ~ 456 (456) . T Consensus 401 ~ 401 (403) T protein:vir:10 401 E 401 (403) T ss_pred C Confidence 2 No 180 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=98.65 E-value=6.5e-08 Score=59.98 Aligned_cols=366 Identities=11% Similarity=-0.030 Sum_probs=149.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccH Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDL 86 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~ 86 (456) +-++++|.+.... .... +.+ .....+... . -........+|+..++-+..-|+.+-.... .. T Consensus 1 Mg~f~~lf~~~~~----~~~~---~~~-----~~~~~v~~~---~--~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~-~~ 62 (395) T protein:vir:10 1 MSILEKIFKTRKD----ITYM---LDL-----DMIEDLSQQ---A--YVKRLAIDSCIEFVARAVAQSHFKVLEGNR-IQ 62 (395) T ss_pred CchhhhhhccCcc----cccc---ccc-----hhccccchh---h--hhhhHHHHHHHHHHHHhhccceeEeccCCc-cc Confidence 2233332221100 0000 000 001111100 0 012335566777777777777776533221 12 Q ss_pred HHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecC Q lcl|Aclame:pro 87 ALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLD 161 (456) Q Consensus 87 ~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 161 (456) ...+...+.. |. -..+...++...+..|.+|+++..+ +...+...-+.+...+++.. ...+.+ .. T Consensus 63 ~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~ 132 (395) T protein:vir:10 63 KNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--KELLIADSFYREEYALYDDI-----FKDVTV---KD 132 (395) T ss_pred cchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC--CCeEecCCccceeEeecCcc-----eeEEEE---cC Confidence 2234444432 32 2344566777778888887765433 22111111111111222111 000000 00 Q ss_pred CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 162 AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAE 241 (456) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~ 241 (456) ......+.++.+.|+.. ..++ .+..|.|-++.....++..... T Consensus 133 --~~~~~~~~~~evih~~~------------------------------~~~~----~~~~G~spi~~~~~~~~~~~~~- 175 (395) T protein:vir:10 133 --YTYQRTFTMQEVIYLKY------------------------------NNNK----VTHFVESLFEDYGKIFGRMIGA- 175 (395) T ss_pred --ceeeeeeccccEEEEcc------------------------------CCCC----cccccchHHHHHHHHHHHHHHH- Confidence 00001122222222210 0000 0112455444443333322211 Q ss_pred HHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh-----hhhhhhhccceeecCCCcceeeccccch------HHHHH Q lcl|Aclame:pro 242 LQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY-----ASIFEAAPGALWELPPGVDIWESQANDF------TPMLS 310 (456) Q Consensus 242 s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 310 (456) ....+.+.-++.-.. ....++.-+.+.. ..........++.++.+.++.++.-.+. ..|++ T Consensus 176 ------~~~~~~~~gii~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e 247 (395) T protein:vir:10 176 ------QLKNYQIRGILKSAS--SAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSE 247 (395) T ss_pred ------HHhcCCCceEEEeCC--CCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHH Confidence 111111111111110 0001111111111 0011122233445677777766543222 24778 Q ss_pred HHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecC Q lcl|Aclame:pro 311 AIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFES 389 (456) Q Consensus 311 ~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~ 389 (456) ..+....+|+.+-++|++.+++..+|.+.....+....|.-.+...+..|...| .+.. ....+++.+.. T Consensus 248 ~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL----------~~~~~~~~~~~f~~~~ 317 (395) T protein:vir:10 248 LMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKL----------ITQSMYLKDTRIEIVG 317 (395) T ss_pred HHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cChhhhcccceecchh Confidence 888888999999999999998665554444444444444444433333333221 1110 11123455555 Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH---HHHHH-------HHH--HHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 390 PDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQDDL-------DRA--REQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 390 ~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~---~~~e~-------~~~--~e~~~~~~~~~~~~~~~~Gs 455 (456) ....|..+.++++.+++++|+++.-.+++++|+.|-+- ++.-. +.. .+.........+.+..++|- T Consensus 318 l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 318 VNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 66778889999999999999999999999999876321 11000 000 00000000011111222222 No 181 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=98.65 E-value=6.5e-08 Score=59.98 Aligned_cols=366 Identities=11% Similarity=-0.030 Sum_probs=149.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccH Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDL 86 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~ 86 (456) +-++++|.+.... .... +.+ .....+... . -........+|+..++-+..-|+.+-.... .. T Consensus 1 Mg~f~~lf~~~~~----~~~~---~~~-----~~~~~v~~~---~--~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~-~~ 62 (395) T protein:vir:95 1 MSILEKIFKTRKD----ITYM---LDL-----DMIEDLSQQ---A--YVKRLAIDSCIEFVARAVAQSHFKVLEGNR-IQ 62 (395) T ss_pred CchhhhhhccCcc----cccc---ccc-----hhccccchh---h--hhhhHHHHHHHHHHHHhhccceeEeccCCc-cc Confidence 2233332221100 0000 000 001111100 0 012335566777777777777776533221 12 Q ss_pred HHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecC Q lcl|Aclame:pro 87 ALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLD 161 (456) Q Consensus 87 ~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 161 (456) ...+...+.. |. -..+...++...+..|.+|+++..+ +...+...-+.+...+++.. ...+.+ .. T Consensus 63 ~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~ 132 (395) T protein:vir:95 63 KNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--KELLIADSFYREEYALYDDI-----FKDVTV---KD 132 (395) T ss_pred cchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC--CCeEecCCccceeEeecCcc-----eeEEEE---cC Confidence 2234444432 32 2344566777778888887765433 22111111111111222111 000000 00 Q ss_pred CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 162 AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAE 241 (456) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~ 241 (456) ......+.++.+.|+.. ..++ .+..|.|-++.....++..... T Consensus 133 --~~~~~~~~~~evih~~~------------------------------~~~~----~~~~G~spi~~~~~~~~~~~~~- 175 (395) T protein:vir:95 133 --YTYQRTFTMQEVIYLKY------------------------------NNNK----VTHFVESLFEDYGKIFGRMIGA- 175 (395) T ss_pred --ceeeeeeccccEEEEcc------------------------------CCCC----cccccchHHHHHHHHHHHHHHH- Confidence 00001122222222210 0000 0112455444443333322211 Q ss_pred HHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh-----hhhhhhhccceeecCCCcceeeccccch------HHHHH Q lcl|Aclame:pro 242 LQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY-----ASIFEAAPGALWELPPGVDIWESQANDF------TPMLS 310 (456) Q Consensus 242 s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 310 (456) ....+.+.-++.-.. ....++.-+.+.. ..........++.++.+.++.++.-.+. ..|++ T Consensus 176 ------~~~~~~~~gii~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e 247 (395) T protein:vir:95 176 ------QLKNYQIRGILKSAS--SAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSE 247 (395) T ss_pred ------HHhcCCCceEEEeCC--CCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHH Confidence 111111111111110 0001111111111 0011122233445677777766543222 24778 Q ss_pred HHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecC Q lcl|Aclame:pro 311 AIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFES 389 (456) Q Consensus 311 ~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~ 389 (456) ..+....+|+.+-++|++.+++..+|.+.....+....|.-.+...+..|...| .+.. ....+++.+.. T Consensus 248 ~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL----------~~~~~~~~~~~f~~~~ 317 (395) T protein:vir:95 248 LMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKL----------ITQSMYLKDTRIEIVG 317 (395) T ss_pred HHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cChhhhcccceecchh Confidence 888888999999999999998665554444444444444444433333333221 1110 11123455555 Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH---HHHHH-------HHH--HHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 390 PDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQDDL-------DRA--REQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 390 ~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~---~~~e~-------~~~--~e~~~~~~~~~~~~~~~~Gs 455 (456) ....|..+.++++.+++++|+++.-.+++++|+.|-+- ++.-. +.. .+.........+.+..++|- T Consensus 318 l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:95 318 VNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 66778889999999999999999999999999876321 11000 000 00000000011111222222 No 182 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=98.65 E-value=6.5e-08 Score=59.98 Aligned_cols=366 Identities=11% Similarity=-0.030 Sum_probs=149.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccH Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDL 86 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~ 86 (456) +-++++|.+.... .... +.+ .....+... . -........+|+..++-+..-|+.+-.... .. T Consensus 1 Mg~f~~lf~~~~~----~~~~---~~~-----~~~~~v~~~---~--~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~-~~ 62 (395) T protein:vir:10 1 MSILEKIFKTRKD----ITYM---LDL-----DMIEDLSQQ---A--YVKRLAIDSCIEFVARAVAQSHFKVLEGNR-IQ 62 (395) T ss_pred CchhhhhhccCcc----cccc---ccc-----hhccccchh---h--hhhhHHHHHHHHHHHHhhccceeEeccCCc-cc Confidence 2233332221100 0000 000 001111100 0 012335566777777777777776533221 12 Q ss_pred HHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecC Q lcl|Aclame:pro 87 ALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLD 161 (456) Q Consensus 87 ~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 161 (456) ...+...+.. |. -..+...++...+..|.+|+++..+ +...+...-+.+...+++.. ...+.+ .. T Consensus 63 ~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~ 132 (395) T protein:vir:10 63 KNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--KELLIADSFYREEYALYDDI-----FKDVTV---KD 132 (395) T ss_pred cchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC--CCeEecCCccceeEeecCcc-----eeEEEE---cC Confidence 2234444432 32 2344566777778888887765433 22111111111111222111 000000 00 Q ss_pred CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 162 AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAE 241 (456) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~ 241 (456) ......+.++.+.|+.. ..++ .+..|.|-++.....++..... T Consensus 133 --~~~~~~~~~~evih~~~------------------------------~~~~----~~~~G~spi~~~~~~~~~~~~~- 175 (395) T protein:vir:10 133 --YTYQRTFTMQEVIYLKY------------------------------NNNK----VTHFVESLFEDYGKIFGRMIGA- 175 (395) T ss_pred --ceeeeeeccccEEEEcc------------------------------CCCC----cccccchHHHHHHHHHHHHHHH- Confidence 00001122222222210 0000 0112455444443333322211 Q ss_pred HHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh-----hhhhhhhccceeecCCCcceeeccccch------HHHHH Q lcl|Aclame:pro 242 LQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY-----ASIFEAAPGALWELPPGVDIWESQANDF------TPMLS 310 (456) Q Consensus 242 s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 310 (456) ....+.+.-++.-.. ....++.-+.+.. ..........++.++.+.++.++.-.+. ..|++ T Consensus 176 ------~~~~~~~~gii~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e 247 (395) T protein:vir:10 176 ------QLKNYQIRGILKSAS--SAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSE 247 (395) T ss_pred ------HHhcCCCceEEEeCC--CCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHH Confidence 111111111111110 0001111111111 0011122233445677777766543222 24778 Q ss_pred HHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEecC Q lcl|Aclame:pro 311 AIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFES 389 (456) Q Consensus 311 ~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~f~~ 389 (456) ..+....+|+.+-++|++.+++..+|.+.....+....|.-.+...+..|...| .+.. ....+++.+.. T Consensus 248 ~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL----------~~~~~~~~~~~f~~~~ 317 (395) T protein:vir:10 248 LMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNAKL----------ITQSMYLKDTRIEIVG 317 (395) T ss_pred HHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cChhhhcccceecchh Confidence 888888999999999999998665554444444444444444433333333221 1110 11123455555 Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH---HHHHH-------HHH--HHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 390 PDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQDDL-------DRA--REQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 390 ~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~---~~~e~-------~~~--~e~~~~~~~~~~~~~~~~Gs 455 (456) ....|..+.++++.+++++|+++.-.+++++|+.|-+- ++.-. +.. .+.........+.+..++|- T Consensus 318 l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 318 VNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred hhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 66778889999999999999999999999999876321 11000 000 00000000011111222222 No 183 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=98.63 E-value=1.7e-07 Score=57.75 Aligned_cols=377 Identities=13% Similarity=0.028 Sum_probs=165.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSR-VRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~-~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) |- +-+..........+. -.-+..+. |-... ..+..+.+. .-+.+.-...+|+..++-+.+-|+.+- T Consensus 1 m~------~~~~~~~~~~~~~~~~~~~~~~~~-g~~~s-~~~~~v~~~-----~al~~~~v~~cv~~ia~~ia~lp~~~~ 67 (419) T protein:vir:80 1 MF------FSRQLLSNLGQTQPGSGGWVSALL-GSARS-EAGQVVTPA-----SALSLTVLQNCVTLLAESIAQLPVELY 67 (419) T ss_pred CC------cccccccccCcCCCCcchhhHHhh-ccccc-ccCcccChH-----HhhccHHHHHHHHHHHHhhccCceEEE Confidence 10 000000000000000 00001111 11000 011111110 012233445678888888877787652 Q ss_pred C-Cccc-c--HHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceE-EEEEccceEEEEeeCCCCce Q lcl|Aclame:pro 80 G-SADS-D--LALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWR 149 (456) Q Consensus 80 ~-~~d~-~--~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~-i~~~~p~~~~~i~d~~~~~~ 149 (456) . ..+. . ....+..++.. | .-..+...++...+.+|.||+++-.+.+|.+. +.+++|..+.+..+.... T Consensus 68 ~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~-- 145 (419) T protein:vir:80 68 ERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK-- 145 (419) T ss_pred EecCCCcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCce-- Confidence 1 1111 1 11224444432 3 22355577888899999999999999999864 888899888776654311 Q ss_pred eEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHH Q lcl|Aclame:pro 150 IRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEP 229 (456) Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~ 229 (456) .+|+..... .+..+.++ |.-.. ......|.|.++. T Consensus 146 -----~~y~~~~~~-----~~~~~~i~-------------------------------h~~~~----~~d~~~G~s~i~~ 180 (419) T protein:vir:80 146 -----PMYRVAGAD-----PLPQRLVH-------------------------------HVRWM----SINGYTGLSPVLL 180 (419) T ss_pred -----EEEEEcCcc-----ccchhheE-------------------------------EecCC----CCCCcccccHHHH Confidence 111111000 00011111 11000 0011236665555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCcccccccc-chhhhhhhhhhh------hhccceeecCCCcceee Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDE-NGNAIDYASIFE------AAPGALWELPPGVDIWE 299 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~-~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 299 (456) ....++...... .-...+|.+ |..+++-........++ .-+.+ ...+. ...+++..++.+.++.+ T Consensus 181 ~~~~i~~~~~~~---~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~n~g~~~vl~~g~~~~~ 255 (419) T protein:vir:80 181 HANAIGHAQAIQ---QYAGKSFMNGTALSGVIERPTDAPALKDQASVDRI--TDGWNAKFGGSGNAKKVALLQEGMKFKP 255 (419) T ss_pred HHHHHHHHHHHH---HHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHH--HHHHHHHhcCccccCCceecCCCceEEe Confidence 444333322221 122233333 33333211100000111 11111 11111 12355777888888877 Q ss_pred ccccch-HHHHHHHHHHHHHHHhhcCCChhhhcccc-ccch-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 300 SQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQS-AE--GAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQI 374 (456) Q Consensus 300 ~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~S-g~--Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~ 374 (456) +...+. ..|++..+....+|+..-++|+..++... ++-| .+ .+.+....|.-.+...+ ..+.+-+ + . T Consensus 256 l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie----~~l~~kl--l--~ 327 (419) T protein:vir:80 256 LSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHE----QAKTRDL--L--L 327 (419) T ss_pred ccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHH----HHHhhhc--c--C Confidence 664333 24778788888999999999999987432 2211 11 22222222222222222 2222111 0 0 Q ss_pred cCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHHHHHHHHhhcccccccCC Q lcl|Aclame:pro 375 EGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAREQITLFAGNPVQRPQED 453 (456) Q Consensus 375 ~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~e~~~~~~~~~~~~~~~~ 453 (456) ......+-+++.+......|..+.++++.++++.|+++...+++.+|+.|-+--+ .-.- .. +.....+.+.++ T Consensus 328 ~~~~~~~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~~~~~-----~n-~~~~~~~~~~~~ 401 (419) T protein:vir:80 328 PSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP-----MN-MVDASKPQPIPM 401 (419) T ss_pred ccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec-----cc-cccccccccccC Confidence 1111122344444455667889999999999999999999999999987632111 0000 00 001111112222 Q ss_pred CCC Q lcl|Aclame:pro 454 GSR 456 (456) Q Consensus 454 Gs~ 456 (456) |.. T Consensus 402 ~~~ 404 (419) T protein:vir:80 402 GKT 404 (419) T ss_pred CCC Confidence 222 No 184 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=98.62 E-value=1.8e-07 Score=57.57 Aligned_cols=359 Identities=12% Similarity=0.001 Sum_probs=156.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccH Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDL 86 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~ 86 (456) +-++.+|.++... ......+-.+ .....+ .. +...-...+|+..++-+..-|+.+...+ ... T Consensus 1 Mg~f~~l~~~~~~----~~~~~~~~~~--------~~~~~~---~~--l~~~~v~~~i~~Ia~~ia~~p~~~~~~~-~~~ 62 (376) T protein:vir:78 1 MGFFSELFKRNKE----IEWMWDLDFL--------EDKTTK---VY--LKKMALNTCVKHIARTIAKSDFRLKNGE-TSV 62 (376) T ss_pred CchhhhhhccCCc----cccccchhhc--------cccchh---hh--hhhHHHHHHHHHHHHhhcccceeecccc-ccc Confidence 2233333321100 0000000000 001000 00 1223456778888887777788764322 222 Q ss_pred HHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceE-EEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 87 ALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 87 ~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) ...+..++.. | ....+...++...+.+|.||+++..+..|.+. ...+.+..+ +. ..++... T Consensus 63 ~~~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~---~~----------~~~~~~~ 129 (376) T protein:vir:78 63 RDKLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAF---FP----------DVFEGVT 129 (376) T ss_pred cchHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccce---ee----------eeeeeee Confidence 2234444432 3 23455577888889999999988776665321 111111111 10 0010000 Q ss_pred CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRA 240 (456) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~ 240 (456) .........|..+.+.|+. +.+..+.+-.. ++...+..+ T Consensus 130 ~~~~~~~~~~~~~evih~~--------------------------------------~~~~~~~~~~~---~~~~~~~~~ 168 (376) T protein:vir:78 130 VKDYRYNRNFSMDDVIFLE--------------------------------------YGNERLSAFTD---GMFEDYGEL 168 (376) T ss_pred eecceeeeeeccccEEEec--------------------------------------cCCCCchhhhh---HHHHHHHHH Confidence 0000000111222222211 11111222111 233333333 Q ss_pred HHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhh--hh---hhhhccceeecCCCcceeeccccc--h----HHHH Q lcl|Aclame:pro 241 ELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYA--SI---FEAAPGALWELPPGVDIWESQAND--F----TPML 309 (456) Q Consensus 241 ~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~ 309 (456) ....... ..+....+...-........++.-+.+... .. .....+.++.++.+.++..+...+ + .-|+ T Consensus 169 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~ 247 (376) T protein:vir:78 169 FGKMIRA-QMRNFQIRGAVNFKMAGVADKDKQTKLQEYIDKVYASFNNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVK 247 (376) T ss_pred HHHHHHH-HHhcCCCceeEEEccCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceEEeeccCccccchhHHHHH Confidence 3332222 122221111100000111111111111110 01 112234456677788876654322 1 2477 Q ss_pred HHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecC Q lcl|Aclame:pro 310 SAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFES 389 (456) Q Consensus 310 ~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~ 389 (456) +..+....+|+.+-++|++.+++..+|.+...+.+....+.-.+...+..+...+ .+. ....+...+.. T Consensus 248 e~~~~~~~~Ia~~fgVPp~~l~~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~kl----------l~~-~~~~~~~~~~~ 316 (376) T protein:vir:78 248 KLRKEMIDYVASILGIPSSLLHGDMADLSNNMKAYMEYCIDPLTKKLEDELNAKL----------FTF-SEFLAGEHIKI 316 (376) T ss_pred HHHHHHHHHHHHHhCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------CCc-ccceecccchh Confidence 8888888999999999999998766665555555554444444433333332222 111 11122222333 Q ss_pred CCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 390 PDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 390 ~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ..-.|..+.++++.+++..|+++.-.+++.+|+.|-+-...+ +. .-.....+....+++| T Consensus 317 ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~d--~~---~~~~n~~~~~~~~e~g 376 (376) T protein:vir:78 317 IHKKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPELD--KY---LITKNYQSADEGGEDG 376 (376) T ss_pred hcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc--ee---eeccCceehhccccCC Confidence 345678889999999999999999999999998763211100 00 0001112233456666 No 185 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=98.62 E-value=1.9e-07 Score=57.44 Aligned_cols=384 Identities=12% Similarity=0.040 Sum_probs=168.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH------------HHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRV------------RLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVA 68 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~------------~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~ 68 (456) |+..-. .++..... ..+..+ ..+...+-|... ..+..+... .-+.+.=...+|+..+ T Consensus 1 ~~~~l~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~g~~v~~~-----~al~~~~V~~~i~~ia 69 (434) T protein:vir:43 1 MSKSLG-KVLSSATS---APRSSLFGWGGKTIRLTDGAFWSQFLGRES--SSGKKVTVD-----KAMKLSAVWACVRLIS 69 (434) T ss_pred Cccchh-hhhhhccc---ccchhhhcccccccccCchHHHHHHhcCCc--cCCceechh-----hhhccHHHHHHHHHHH Confidence 442211 11111111 111100 011111112100 011111111 0011222345677777 Q ss_pred HhhhcCCcccC-CCcc----ccHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccce Q lcl|Aclame:pro 69 DRIIPNGITVG-GSAD----SDLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPET 137 (456) Q Consensus 69 ~~l~g~~~~~~-~~~d----~~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~ 137 (456) +-+..-|+.+- ...+ ......+..++.. |. -..+...++...+.+|.||+++-.+ .|.+ .+.+++|.. T Consensus 70 ~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~-~G~~~~L~~l~p~~ 148 (434) T protein:vir:43 70 TSVAGLPLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA-AGRPAALDFLLPSR 148 (434) T ss_pred HhhhhCceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcc Confidence 77766677651 1111 1112234455532 32 2356677888899999999988665 6765 478889999 Q ss_pred EEEEeeCCCCceeEEEEEEE-EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEE Q lcl|Aclame:pro 138 MVVSVDPLQPWRIRAAMRWW-RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVV 216 (456) Q Consensus 138 ~~~i~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 216 (456) +.+..++.- . +.|+ ...++. ...|.++.+.|+... T Consensus 149 v~~~~~~~g--~----~~y~~~~~~g~---~~~~~~~eVih~~~~----------------------------------- 184 (434) T protein:vir:43 149 VDLECDENG--R----LKYFYTTKKGA---RREIERTNMLHIPAF----------------------------------- 184 (434) T ss_pred eEEEEcCCC--e----EEEEEEecCce---EEEEccccEEEecCc----------------------------------- Confidence 887776431 1 1111 111111 112333344333100 Q ss_pred EecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh-----hhccce Q lcl|Aclame:pro 217 VYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE-----AAPGAL 288 (456) Q Consensus 217 ~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~-----~~~~~~ 288 (456) .+....|.|-++.....+.... .-......+|.+ |-.+++-... ..++.-+.+. ..++ ...+++ T Consensus 185 ~~dg~~G~spi~~~~~~i~~~~---~~~~~~~~~f~ng~~~~gil~~~~~---l~~e~~~~~r--~~~~~~~g~~nag~~ 256 (434) T protein:vir:43 185 TLDGRIGLSAIRYGVDVFGSVM---SAEDAANGTFKNGLLPTVAFKVDRI---LQPAQREEFR--EYVKSVSGAMNSGRS 256 (434) T ss_pred CCCCccccCHHHHHHHHHHHHH---HHHHHHHHHHhccCCcceEEecCCC---CCHHHHHHHH--HHHHHhcCccccCCc Confidence 0011125555544333332222 221222233333 3223321110 1111111111 1111 123456 Q ss_pred eecCCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhcccc-ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 289 WELPPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFKCE-DRLSIAKIGLE 365 (456) Q Consensus 289 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~-~~~~~f~~~l~ 365 (456) ..++.+.++.++.... ...|++..+....+||..-++|++.++... ++.++..++.....+...|- -....+...+. T Consensus 257 ~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~~~~~f~~~~L~P~~~~ie~~ln 336 (434) T protein:vir:43 257 PVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQMLAFLTFSISSITNQIQQCVN 336 (434) T ss_pred cccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 6778888887765332 234778888888999999999999886432 11123333333322222111 11111112221 Q ss_pred HHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH-------------HHHHH Q lcl|Aclame:pro 366 AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI-------------KQDDL 432 (456) Q Consensus 366 ~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~-------------~~~e~ 432 (456) +.+ + .........+++.+......|..+.++++.++.+.|+++...+++.+|+.+-+- +.+.. T Consensus 337 ~kL---~-~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~ 412 (434) T protein:vir:43 337 KRL---L-TAPERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKENLPELPGGDILTVQSNLVPIDQLGQ 412 (434) T ss_pred hhc---C-ChhhhcCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccCccchhhhhc Confidence 111 0 011111233444445556788899999999999999999999999998876321 11110 Q ss_pred HHHHHH--HHHHhhcccccccC Q lcl|Aclame:pro 433 DRAREQ--ITLFAGNPVQRPQE 452 (456) Q Consensus 433 ~~~~e~--~~~~~~~~~~~~~~ 452 (456) ....+. .......+.+.|.+ T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 413 SNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred cCCCcchhhhhhccCCCCCCCC Confidence 000000 01111122233333 No 186 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=98.61 E-value=2e-07 Score=57.32 Aligned_cols=387 Identities=12% Similarity=0.003 Sum_probs=164.5 Q ss_pred HHHHHHHH-HHHHH-HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC-C-cc Q lcl|Aclame:pro 8 EWLPVLTK-RIDDG-MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG-S-AD 83 (456) Q Consensus 8 ~~~~~l~~-~~~~~-~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~-~-~d 83 (456) -|..+... ..... .....-+....-+... ..+..+..+ .-+.+.-...+|+..++-+-.-|+.+-. . ++ T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~s--~~~~~vt~~-----~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~ 73 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQMSAGGWVSALLGSSRS--DSGQVVTPA-----SALALTVLQNCVTLLAESIAQLPIELYERSGED 73 (419) T ss_pred CcccccccccccccccCcchhhHHhhcCCCc--cCCcccchH-----HhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 00000000 00000 0000000111111110 001111111 0122333566788888877777776421 1 11 Q ss_pred cc--HHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceE-EEEEccceEEEEeeCCCCceeEEEEE Q lcl|Aclame:pro 84 SD--LALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWRIRAAMR 155 (456) Q Consensus 84 ~~--~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) .. ....+..++.. | .-..+...++...+.+|.||+++-.+.+|.+. +.+++|..+.+..+... + + T Consensus 74 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~-~-~----- 146 (419) T protein:vir:14 74 RKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDL-K-P----- 146 (419) T ss_pred cccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCc-e-E----- Confidence 11 11224444432 3 23345567788899999999999999889874 88889988887665321 1 0 Q ss_pred EEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHH Q lcl|Aclame:pro 156 WWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIIN 235 (456) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD 235 (456) +|....... +..+.++ |.-.. ....-.|.|.++.....++ T Consensus 147 ~y~~~~~~~-----~~~~~i~-------------------------------h~~~~----~~dg~~G~s~i~~~~~~i~ 186 (419) T protein:vir:14 147 VYRVRGSDP-----MPQRLVH-------------------------------HVRWM----SINGYTGLSPVLLHANAIG 186 (419) T ss_pred EEEEccCcc-----cchhhee-------------------------------EecCc----CCCCcccccHHHHHHHHHH Confidence 111100000 0001111 11000 0011136666655444443 Q ss_pred HHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccc-cchhhhhhh--hhhh--hhccceeecCCCcceeeccccchH- Q lcl|Aclame:pro 236 RINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVD-ENGNAIDYA--SIFE--AAPGALWELPPGVDIWESQANDFT- 306 (456) Q Consensus 236 ~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d-~~g~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~- 306 (456) ...... .....+|.+ |.-+++-........+ +.-..+... .... ...+++..++.+.++.++...+.+ T Consensus 187 ~~~~~~---~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~ 263 (419) T protein:vir:14 187 HAQAIQ---QYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDA 263 (419) T ss_pred HHHHHH---HHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhH Confidence 333222 222233333 3333331111100011 111111100 0011 123557778888888777643332 Q ss_pred HHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEE Q lcl|Aclame:pro 307 PMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVS 386 (456) Q Consensus 307 ~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~ 386 (456) .|++..+....+|+..-++|++.++.... .+...++.....+...|-. -+-..+++.+...+-.......+.+++. T Consensus 264 q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~-~t~s~~E~~~~~f~~~~L~---P~~~~ie~~l~~kll~~~~~~~~~i~fd 339 (419) T protein:vir:14 264 ALIDALRLSALDIARIYKIPAHMVNELER-ATFSNIEHQSLQFVIYTLL---PWVKRHEQAKTRDLLLPSERKQYFIEYN 339 (419) T ss_pred HHHHHHHHHHHHHHHHhCCCHHHhcCCCC-CCcccHHHHHHHHHHHHHH---HHHHHHHHHHhhhccCccccCCeEEEEe Confidence 46777788889999999999999974321 2222222222222221110 1111121211111100111112234444 Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHH--HHHHhhcc--cccccCCCCC Q lcl|Aclame:pro 387 FESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQ--ITLFAGNP--VQRPQEDGSR 456 (456) Q Consensus 387 f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~--~~~~~~~~--~~~~~~~Gs~ 456 (456) +....-.|..+.++++.++++.|+++.-.+++.+|+.|-+--+.-... ... .+.....+ ...|...+.- T Consensus 340 ~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~-~n~~~~~~~~~~~~~~~~~~~~~~~ 412 (419) T protein:vir:14 340 LAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP-MNMVDASKPQQLPVGKSEPTKAAID 412 (419) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeec-cccccccccccccCCCCCCcccccc Confidence 445556788999999999999999999999999998764211100000 000 00000000 0111111111 No 187 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=98.60 E-value=2e-07 Score=57.25 Aligned_cols=372 Identities=9% Similarity=-0.033 Sum_probs=149.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCc-ccc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA-DSD 85 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~-d~~ 85 (456) +-+++++..+... +.... .............. +.+.-...+|+..++-+..-|+.+.... +.. T Consensus 1 Mgl~d~~~~~~~~-----------~~~~~---~~~~~~~~~~~~~~--l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~~~ 64 (395) T protein:vir:96 1 MGILDFFSFKKSG-----------TLSDD---DSGSTTSEKLTNVV--LKEDALYKCVNYLARIISKSTFRIKAPEKLTE 64 (395) T ss_pred CcchhhhcCCCCc-----------ccccc---ccccchhhhcchhh--hhhHHHHHHHHHHHHhhccceeEEEeCCcccc Confidence 1122222111000 00000 00000000000100 1122445677888887777787763221 111 Q ss_pred HHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 86 LALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 86 ~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) ....+..++.. | .-..+...++..++.+|.||+++..+.... .+. .++......+. +++... T Consensus 65 ~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~------~~~-~~~~~~~~~~~------~~~~v~ 131 (395) T protein:vir:96 65 NQKDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIY------VAD-AFTQDKKLSGN------KFKVSR 131 (395) T ss_pred ccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCcee------cCC-ccccccccccc------eeeeee Confidence 22234444432 3 224556678888999999998876653221 011 11110000000 000000 Q ss_pred CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCc---hHHHHHHHHHHH Q lcl|Aclame:pro 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMG---EVEPHIDIINRI 237 (456) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s---~~~~v~~liD~~ 237 (456) .........+.++.+.|+.. ..++.. ..+.+ ...+++.+.-+. T Consensus 132 ~~~~~~~~~~~~~dvih~k~------------------------------~~~~~~----~~~~~~~~~~~~~~~~~i~~ 177 (395) T protein:vir:96 132 VQGQTYEKIFTFDQVIYLKN------------------------------DNSDLM----LKVESLWEEYGELLGHVINN 177 (395) T ss_pred eccceeeeEeccCceEEecc------------------------------cCCccc----cccccccchHHHHHHHHHHH Confidence 00000011122222322210 000000 01111 222333322221 Q ss_pred HHHHHHHHHHHHHHhhhHHhhcCCCc-cccccccch-hhhhh-hhhhhhhccceeecCCCcceeeccccchH-------H Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAFRQRALKSTEH-GLPNVDENG-NAIDY-ASIFEAAPGALWELPPGVDIWESQANDFT-------P 307 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~~~~~i~G~~~-~~~~~d~~g-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 307 (456) .............+... ....|... .....++.- ..... ........+.++.++.+.++..+...+.+ . T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~ 256 (395) T protein:vir:96 178 QKIANQIRFTMTPPKDK-VRERAQENSDGGRQPKSDKDFFKRTIEKIRTESVVGIPVTANTNYEEYGSKNTGSVKSYVDD 256 (395) T ss_pred HHHHHHHHHHhhhcccc-cccceeeccCchhhHHHHHHHHHHHHHHhhcCCcceEEccCCceeEecccChhhhhhhhHHH Confidence 11111111111111111 01111110 000000100 01100 11122334445667777777665543322 2 Q ss_pred HHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccceEE Q lcl|Aclame:pro 308 MLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-EDTVDVS 386 (456) Q Consensus 308 ~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-~~~i~v~ 386 (456) +.+.....+.+||.+-++|++.+++..+|.+...+.+....|.-.+...+..+...| ....+ ...+.+. T Consensus 257 ~~~~~~~~~~eIa~~fgVPp~~l~~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L----------l~~~e~~~~~~f~ 326 (395) T protein:vir:96 257 IKKLKDQYMAEFAEMLGIPISLLHGDIADNQKNYELLLEGPIESLITNIVDGLEYAI----------FDKSETLEGSFIK 326 (395) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CChhhhcCceeEe Confidence 333344556789999999999998665554444444444444443333332222211 11111 1224466 Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH---HHHHHHHHHHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 387 FESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQDDLDRAREQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 387 f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~---~~~e~~~~~e~~~~~~~~~~~~~~~~Gs 455 (456) |......+..+.++++.++++.|+++.-.+++.+|+.|-+. ++.-.-.. ...+.+..++..++.|+ T Consensus 327 ~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~gD~~~~~~N---~~~~~~~gge~~~~~~~ 395 (395) T protein:vir:96 327 VTGLKNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGLGKVLYMTKN---YESVLERGGEVDEEVET 395 (395) T ss_pred ecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccc---ceechhccCCCCCCCCC Confidence 66777889999999999999999999999999999876321 11100000 00011112223334444 No 188 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=98.60 E-value=2.1e-07 Score=57.19 Aligned_cols=369 Identities=10% Similarity=0.039 Sum_probs=145.6 Q ss_pred CC-------------------------CCCH----HHHHH---------HHHHHHHHHHHHHHHHHHHhhccCcccccCc Q lcl|Aclame:pro 1 MT-------------------------ASTP----AEWLP---------VLTKRIDDGMSRVRLLARYSNGDAPLPELTR 42 (456) Q Consensus 1 ~~-------------------------~~t~----~~~~~---------~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~ 42 (456) +. ..+| ..+++ .++.........|.....+.+. T Consensus 50 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~--------- 120 (563) T protein:vir:95 50 LYGQQQAYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEK--------- 120 (563) T ss_pred hccCCCcchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcc--------- Confidence 11 1111 11111 1111111111111111111111 Q ss_pred ccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC----Cccc--cHHHHHHHHHH-----h----cChhHHHHHHH Q lcl|Aclame:pro 43 NTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG----SADS--DLALRARRIWR-----D----NRMDSVCKQWV 107 (456) Q Consensus 43 ~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~----~~d~--~~~~~l~~~~~-----~----n~~~~~~~~~~ 107 (456) .+ +=++.+.. ..+. .....+...+. . ..+..+...++ T Consensus 121 ------------------------~~----~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv 172 (563) T protein:vir:95 121 ------------------------GL----GFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIV 172 (563) T ss_pred ------------------------cc----cceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHH Confidence 00 11111100 0000 00011111110 0 01334556678 Q ss_pred HHHhhCCeeEEEEE--eCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccc Q lcl|Aclame:pro 108 KYGLDFGESYLTCW--RRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFV 184 (456) Q Consensus 108 ~~~~~~G~a~~~v~--~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (456) .+.+.+|.||+++. .+..|++ .+.+++|..+.+..++.. .......+++...++.. ...|.+..+.++.+.. T Consensus 173 ~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g-~~~~~~~~y~~~~~g~~--~~~~~~~evI~~~~~~-- 247 (563) T protein:vir:95 173 RDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKG-KIIKGGKRFVQVVDKRV--VASFTSRELAMGIRNP-- 247 (563) T ss_pred HHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCC-ceeccceeEEEEeCCce--eEEecCcceEEEeccC-- Confidence 88999999998765 4556766 488899999988876532 22222222222222211 1112222222111100 Q ss_pred cccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhc-- Q lcl|Aclame:pro 185 QSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALK-- 259 (456) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~-- 259 (456) .. +. .....|.|.++.....+.... .-......+|.+ |.-++. T Consensus 248 --------------------~~-d~--------~~~~~G~Spi~~a~~~i~~~~---~~~~~~~~~f~ng~~p~giL~~~ 295 (563) T protein:vir:95 248 --------------------RT-EL--------SSSGYGLSEVEIAMKEFIAYN---NTESFNDRFFSHGGTTRGILQIR 295 (563) T ss_pred --------------------CC-Cc--------ccCcccchHHHHHHHHHHHHH---HHHHHHHHHHHccCCCceEEEeC Confidence 00 00 001125665554443333222 222222333333 332222 Q ss_pred CCCccccccccchhhhhhhhhhhh------hccce-eecCCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhc Q lcl|Aclame:pro 260 STEHGLPNVDENGNAIDYASIFEA------APGAL-WELPPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLM 331 (456) Q Consensus 260 G~~~~~~~~d~~g~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~ 331 (456) |.. ...++.-..+. ..|.. ..+++ ..++.+.++..+.... ...|++..+....+|++.-++|++.+| T Consensus 296 ~~~---~ls~e~~~~~~--~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG 370 (563) T protein:vir:95 296 SDQ---QQSQHALENFK--REWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIG 370 (563) T ss_pred CCC---CCCHHHHHHHH--HHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcc Confidence 211 01111111211 11221 22333 5567888887765432 234888889999999999999999997 Q ss_pred ccc-c---------cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHH Q lcl|Aclame:pro 332 PDS-A---------NQSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) Q Consensus 332 ~~~-~---------n~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad 400 (456) ... + +.+...+......+...+ .-+...+...|.+.+ + .. ....+.+.|.+..+.+..+... T Consensus 371 ~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L---~---~~-~~~~~~~~f~r~D~~~~~e~~~ 443 (563) T protein:vir:95 371 FPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHI---I---SE-YGDKYTFQFVGGDTKSATDKLN 443 (563) T ss_pred ccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c---hh-cccccEEEeccCCHHHHHHHHH Confidence 321 1 111111221111111111 111122222222111 1 01 1234567787776666655443 Q ss_pred HHHHHHhcCCCcHHHHHHhCCCCccHHHH-------------------HHHHHHHHHHHHH---hhccccc----ccCCC Q lcl|Aclame:pro 401 AASLAKAAGESWASIRRNILNYNADQIKQ-------------------DDLDRAREQITLF---AGNPVQR----PQEDG 454 (456) Q Consensus 401 ~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-------------------~e~~~~~e~~~~~---~~~~~~~----~~~~G 454 (456) +.+++++|+++.-.+++.+|+.|-+--+ .+.+..+.....+ ...+.+. +..+| T Consensus 444 -~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (563) T protein:vir:95 444 -ILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDS 522 (563) T ss_pred -HHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCC Confidence 4467788999998899998886532100 0001111111111 1111111 12222 Q ss_pred CC Q lcl|Aclame:pro 455 SR 456 (456) Q Consensus 455 s~ 456 (456) +. T Consensus 523 ~~ 524 (563) T protein:vir:95 523 SN 524 (563) T ss_pred CC Confidence 11 No 189 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=98.60 E-value=2.1e-07 Score=57.19 Aligned_cols=369 Identities=10% Similarity=0.039 Sum_probs=145.6 Q ss_pred CC-------------------------CCCH----HHHHH---------HHHHHHHHHHHHHHHHHHHhhccCcccccCc Q lcl|Aclame:pro 1 MT-------------------------ASTP----AEWLP---------VLTKRIDDGMSRVRLLARYSNGDAPLPELTR 42 (456) Q Consensus 1 ~~-------------------------~~t~----~~~~~---------~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~ 42 (456) +. ..+| ..+++ .++.........|.....+.+. T Consensus 50 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~--------- 120 (563) T protein:vir:99 50 LYGQQQAYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEK--------- 120 (563) T ss_pred hccCCCcchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcc--------- Confidence 11 1111 11111 1111111111111111111111 Q ss_pred ccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC----Cccc--cHHHHHHHHHH-----h----cChhHHHHHHH Q lcl|Aclame:pro 43 NTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG----SADS--DLALRARRIWR-----D----NRMDSVCKQWV 107 (456) Q Consensus 43 ~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~----~~d~--~~~~~l~~~~~-----~----n~~~~~~~~~~ 107 (456) .+ +=++.+.. ..+. .....+...+. . ..+..+...++ T Consensus 121 ------------------------~~----~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv 172 (563) T protein:vir:99 121 ------------------------GL----GFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIV 172 (563) T ss_pred ------------------------cc----cceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHH Confidence 00 11111100 0000 00011111110 0 01334556678 Q ss_pred HHHhhCCeeEEEEE--eCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccc Q lcl|Aclame:pro 108 KYGLDFGESYLTCW--RRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFV 184 (456) Q Consensus 108 ~~~~~~G~a~~~v~--~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (456) .+.+.+|.||+++. .+..|++ .+.+++|..+.+..++.. .......+++...++.. ...|.+..+.++.+.. T Consensus 173 ~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g-~~~~~~~~y~~~~~g~~--~~~~~~~evI~~~~~~-- 247 (563) T protein:vir:99 173 RDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKG-KIIKGGKRFVQVVDKRV--VASFTSRELAMGIRNP-- 247 (563) T ss_pred HHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCC-ceeccceeEEEEeCCce--eEEecCcceEEEeccC-- Confidence 88999999998765 4556766 488899999988876532 22222222222222211 1112222222111100 Q ss_pred cccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhc-- Q lcl|Aclame:pro 185 QSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALK-- 259 (456) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~-- 259 (456) .. +. .....|.|.++.....+.... .-......+|.+ |.-++. T Consensus 248 --------------------~~-d~--------~~~~~G~Spi~~a~~~i~~~~---~~~~~~~~~f~ng~~p~giL~~~ 295 (563) T protein:vir:99 248 --------------------RT-EL--------SSSGYGLSEVEIAMKEFIAYN---NTESFNDRFFSHGGTTRGILQIR 295 (563) T ss_pred --------------------CC-Cc--------ccCcccchHHHHHHHHHHHHH---HHHHHHHHHHHccCCCceEEEeC Confidence 00 00 001125665554443333222 222222333333 332222 Q ss_pred CCCccccccccchhhhhhhhhhhh------hccce-eecCCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhc Q lcl|Aclame:pro 260 STEHGLPNVDENGNAIDYASIFEA------APGAL-WELPPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLM 331 (456) Q Consensus 260 G~~~~~~~~d~~g~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~ 331 (456) |.. ...++.-..+. ..|.. ..+++ ..++.+.++..+.... ...|++..+....+|++.-++|++.+| T Consensus 296 ~~~---~ls~e~~~~~~--~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG 370 (563) T protein:vir:99 296 SDQ---QQSQHALENFK--REWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIG 370 (563) T ss_pred CCC---CCCHHHHHHHH--HHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcc Confidence 211 01111111211 11221 22333 5567888887765432 234888889999999999999999997 Q ss_pred ccc-c---------cchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHH Q lcl|Aclame:pro 332 PDS-A---------NQSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYS 400 (456) Q Consensus 332 ~~~-~---------n~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad 400 (456) ... + +.+...+......+...+ .-+...+...|.+.+ + .. ....+.+.|.+..+.+..+... T Consensus 371 ~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L---~---~~-~~~~~~~~f~r~D~~~~~e~~~ 443 (563) T protein:vir:99 371 FPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHI---I---SE-YGDKYTFQFVGGDTKSATDKLN 443 (563) T ss_pred ccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c---hh-cccccEEEeccCCHHHHHHHHH Confidence 321 1 111111221111111111 111122222222111 1 01 1234567787776666655443 Q ss_pred HHHHHHhcCCCcHHHHHHhCCCCccHHHH-------------------HHHHHHHHHHHHH---hhccccc----ccCCC Q lcl|Aclame:pro 401 AASLAKAAGESWASIRRNILNYNADQIKQ-------------------DDLDRAREQITLF---AGNPVQR----PQEDG 454 (456) Q Consensus 401 ~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-------------------~e~~~~~e~~~~~---~~~~~~~----~~~~G 454 (456) +.+++++|+++.-.+++.+|+.|-+--+ .+.+..+.....+ ...+.+. +..+| T Consensus 444 -~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (563) T protein:vir:99 444 -ILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDS 522 (563) T ss_pred -HHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCC Confidence 4467788999998899998886532100 0001111111111 1111111 12222 Q ss_pred CC Q lcl|Aclame:pro 455 SR 456 (456) Q Consensus 455 s~ 456 (456) +. T Consensus 523 ~~ 524 (563) T protein:vir:99 523 SN 524 (563) T ss_pred CC Confidence 11 No 190 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=98.59 E-value=2.2e-07 Score=57.04 Aligned_cols=392 Identities=10% Similarity=-0.006 Sum_probs=149.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) .+.-+|+-+...- -......++.+.+.|.+ +++...-+.+ ..+ .+.-|+ ++.....-+.+=++.+.. T Consensus 52 ~~~~~~~g~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~~i~t-----~~~--~va~~~--~i~~~s~~~~~~~i~l~~ 118 (535) T protein:vir:10 52 IADGNVAGQYSVA---SISDVLSTKKLLKAYAD-NDIVQAIIRT-----RTN--QVLTYS--NPSRYNRNGVGFKVELKD 118 (535) T ss_pred cccCCcccccccC---ccccccCHHHHHHHhcc-ChhHHHHHHH-----HHH--HHHHHH--HHHHHhcccCcceeEEEe Confidence 1112221000000 00000011111111111 1111000000 000 001121 223333333333333211 Q ss_pred C----cc--ccHHHHHHHHHHh--cC-------hhHHHHHHHHHHhhCC-eeEEEEEeCCCCceE-EEEEccceEEEEee Q lcl|Aclame:pro 81 S----AD--SDLALRARRIWRD--NR-------MDSVCKQWVKYGLDFG-ESYLTCWRRDDGTAT-ITADSPETMVVSVD 143 (456) Q Consensus 81 ~----~d--~~~~~~l~~~~~~--n~-------~~~~~~~~~~~~~~~G-~a~~~v~~~~~g~~~-i~~~~p~~~~~i~d 143 (456) . .. ......+..++.. |. +..+...+..+++.+| .+|+++..+..|++. +.+++|..+.+..+ T Consensus 119 ~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d 198 (535) T protein:vir:10 119 ATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYS 198 (535) T ss_pred ccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEc Confidence 0 00 0011122333321 21 1234455666666665 689999999999875 89999999988877 Q ss_pred CCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCC Q lcl|Aclame:pro 144 PLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDG 223 (456) Q Consensus 144 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~ 223 (456) +....... .+|...++... ..|.++.+.++..... .+ ......| T Consensus 199 ~~~~~~~~---~~~~~~~~~~~--~~~~~~eiih~~~~~~--------------------------~~-----~~~~~~G 242 (535) T protein:vir:10 199 PRSKDQPR---KFEQFVSETKS--VKFSERNLTFINYWNL--------------------------SD-----TDRRGYG 242 (535) T ss_pred CccccCce---EEEEEecCcee--EEECcccEEEEeccCC--------------------------CC-----ccccccc Confidence 54322111 12211111111 1233344443321000 00 0000126 Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCc-cccccccchhhhhhhhhhhh------hccce-eecC Q lcl|Aclame:pro 224 MGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEH-GLPNVDENGNAIDYASIFEA------APGAL-WELP 292 (456) Q Consensus 224 ~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~-~~~~~d~~g~~~~~~~~~~~------~~~~~-~~~~ 292 (456) .|.++.+...++... .-......+|.+ |.-++.-... +....++.-+.+. ..|.. ..+++ +... T Consensus 243 ~Spi~~~~~~i~~~~---aa~~~~~~~f~ng~~p~giL~~~~~~~~~ls~e~~e~lk--~~~~~~~~G~~nag~~~vl~~ 317 (535) T protein:vir:10 243 YSPVEASIPLIRAIY---DTEQFNARFFSQGGTTRGILVIDQDGDAQANQMMLAGIR--RQWTSQGSGLGGAWKIPILAA 317 (535) T ss_pred ccHHHHHHHHHHHHH---HHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHH--HHHHHHhcCcccccccccccC Confidence 665555444443333 222233344443 3323321111 0001111111111 11211 12232 2333 Q ss_pred CCcceeeccc--cchHHHHHHHHHHHHHHHhhcCCChhhhcccc----ccchH-------HHHHHHHHHHHHHH-HHHHH Q lcl|Aclame:pro 293 PGVDIWESQA--NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS----ANQSA-------EGAHNIEKGFLFKC-EDRLS 358 (456) Q Consensus 293 ~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~----~n~Sg-------~Al~~~~~~l~~k~-~~~~~ 358 (456) .+.++..+.. .+. .|++..+....+||.+-++|++.+|... +|.++ ..++.++..+...+ .-+.+ T Consensus 318 ~g~~~~~l~~~~~D~-qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~ 396 (535) T protein:vir:10 318 KDAKFVNMTQNSRDM-EFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLS 396 (535) T ss_pred CCceEEecCCChhHH-HHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH Confidence 5667766543 333 4888888999999999999999997421 12111 11122221111111 01111 Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHH-----HHH Q lcl|Aclame:pro 359 IAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQD-----DLD 433 (456) Q Consensus 359 ~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~-----e~~ 433 (456) .+...|.+. +... ....+.+.|......+..+.+++.. +..+|.++.-.+++.+|+.+-+--+. ..+ T Consensus 397 ~ie~~ln~~------Ll~~-~~~~~~f~f~~l~~~d~~~r~~~~~-~~~~g~lT~NE~R~~~gl~piegGD~~~~~~~~~ 468 (535) T protein:vir:10 397 FIEQVINDK------IMRY-VDTDYRFSFTLGDAQDKLQEEQVWK-LKLANGYFINEYRKDHGLKTVDGLDVPGFIGSAE 468 (535) T ss_pred HHHHHHhhh------cccc-cCCeEEEEeccccccCHHHHHHHHH-HHHcCCCCHHHHHHHhCCCCCCCccccccccchh Confidence 111111111 1111 1234677787777788777776654 44456678888999998865321110 000 Q ss_pred HHHHHHHHHhhc--------------------------ccccccCCCCC Q lcl|Aclame:pro 434 RAREQITLFAGN--------------------------PVQRPQEDGSR 456 (456) Q Consensus 434 ~~~e~~~~~~~~--------------------------~~~~~~~~Gs~ 456 (456) .--. ....+.. ....+.++|.+ T Consensus 469 ~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~~g~~~~~~ 516 (535) T protein:vir:10 469 NFIN-ATGFGQPNVPDSSDDSGSTLGERERQERIQHSKDYEKGKDDPKS 516 (535) T ss_pred hccc-ccccccccCCCCCCCccccCCccccCcccccccccccCCCCCCC Confidence 0000 0000000 00001111111 No 191 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=98.59 E-value=2.4e-07 Score=56.92 Aligned_cols=379 Identities=14% Similarity=0.027 Sum_probs=159.7 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCc-c- Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVR-LLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA-D- 83 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~-~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~-d- 83 (456) +-+++.+.........+.. ....++-+..... ..... ... -........+|+..++-+..-|+.+-... + T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~---~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 73 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRADTGYVGLFMSGEDVS--FLVPG--YVR---LSDNPEVRMAVHKIADLISSMTIYLMQNTEDG 73 (406) T ss_pred CcchhhhccccccccccccchhhhhhccCcccC--ccccC--HHH---HhhcHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 2222222111111111110 0111111111100 00000 000 12234667889999998888888752111 1 Q ss_pred -ccHHHHHHHHHH-h-c---ChhHHHHHHHHHHhhCCeeE--EEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 84 -SDLALRARRIWR-D-N---RMDSVCKQWVKYGLDFGESY--LTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 84 -~~~~~~l~~~~~-~-n---~~~~~~~~~~~~~~~~G~a~--~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) ......+...+. + | ....+...++.+.+.+|.+| +.+-.+..|.+ .+.+++|..+.+..+... . T Consensus 74 ~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~-------~ 146 (406) T protein:vir:95 74 DIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDG-------Y 146 (406) T ss_pred ceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCe-------E Confidence 111112222222 1 2 23456677888888887664 44555666766 478888888877765431 1 Q ss_pred EEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHH Q lcl|Aclame:pro 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDII 234 (456) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~li 234 (456) ++.. ++ ..|.++.+.|+.... .+. ..-.|.|-++.....+ T Consensus 147 ~~~~--~~-----~~~~~~evih~~~~~------------------------------~~~---~~~~G~s~i~~~~~~i 186 (406) T protein:vir:95 147 QVLY--GG-----QTFNYDEVLHFIYNP------------------------------DPE---RPYIGRGYRVVLKDIA 186 (406) T ss_pred EEEe--cc-----EEEchhHEEEeeccC------------------------------CCC---CCccccCHHHHHHHHH Confidence 1110 00 112233333321100 000 0002566555544444 Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhh--hhhh--hhccceeecC-CCcceeecc---ccchH Q lcl|Aclame:pro 235 NRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYA--SIFE--AAPGALWELP-PGVDIWESQ---ANDFT 306 (456) Q Consensus 235 D~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~--~~~~--~~~~~~~~~~-~~~~~~~~~---~~~~~ 306 (456) +....+..-......-.+.|..++.-.. . ..++.-+.+... .... ...+....++ .+.++.++. ..+ . T Consensus 187 ~~~~~~~~~~~~~~~ng~~~~~il~~~~-~--l~~e~~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d-~ 262 (406) T protein:vir:95 187 DNLKQATATKKSFMSGKYMPSLIVKVDA-A--TAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKD-I 262 (406) T ss_pred HHHHHHHHHHHHHHhccCCcceEEEeCC-C--CCHHHHHHHHHHHHHHhccccccCCceeecCCCccccccccCChhH-H Confidence 3333222221111111222222222111 0 111111111100 1111 1112233333 333333332 223 3 Q ss_pred HHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEE Q lcl|Aclame:pro 307 PMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVS 386 (456) Q Consensus 307 ~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~ 386 (456) .+++..+....+||..-++|++.+|.. ++.+.....+....+.-.+ ..+.+.+.. .+... ....+++. T Consensus 263 q~~e~~~~~~~~Ia~~fgVp~~~lg~~-~~~~~~~~~~~~~~l~P~~--------~~ie~~l~~--~l~~~-~~~~~~fd 330 (406) T protein:vir:95 263 AINEAVELDKRTVAGMFGVPAFLLGIG-EFNRDEYNNFINSTILPIA--------KGIEQELTR--KLLIS-PDLYFKFN 330 (406) T ss_pred HHHHHHHHHHHHHHHHhCCCHHHcCCC-CchHHHHHHHHHHHHHHHH--------HHHHHHHHH--hcCCC-CCcEEEee Confidence 467888888899999999999988643 2222222222222211111 111111111 11111 22334555 Q ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-H----HHHHHHHHHHHH-hhcccccccCCCCC Q lcl|Aclame:pro 387 FESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-D----DLDRAREQITLF-AGNPVQRPQEDGSR 456 (456) Q Consensus 387 f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~----e~~~~~e~~~~~-~~~~~~~~~~~Gs~ 456 (456) +......|..+.++.+.+++.+|+++...+++++|+.+.+--+ . ..... +..... ....++..+++|.+ T Consensus 331 ~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~~~n~~~~-~~~~~~~~~k~g~~~~~~~~~ 405 (406) T protein:vir:95 331 PRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVILENYIPL-DKIGDQSKLKGGDNSGADGQT 405 (406) T ss_pred chhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccCccch-hhcccccccCCCCCCCCCCCC Confidence 5555667888999999999999999999999999987642211 0 00000 001100 11122233344444 No 192 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=98.55 E-value=3.1e-07 Score=56.25 Aligned_cols=368 Identities=13% Similarity=0.040 Sum_probs=175.0 Q ss_pred CC------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCccc Q lcl|Aclame:pro 1 MT------------------------------------ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNT 44 (456) Q Consensus 1 ~~------------------------------------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~ 44 (456) |+ .+||..+..-|...-.-...++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~------------------- 61 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQA------------------- 61 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHH------------------- Confidence 11 22222211111111000000000 Q ss_pred chhhhhhhhhh--cCChHHHHHHHHHHhhhcCCcccCCCc-----cccHHHHHHHHHHhc-ChhHHHHHHHHHHhhCCee Q lcl|Aclame:pro 45 SAAWRSFQREA--RTNWGLMVRDSVADRIIPNGITVGGSA-----DSDLALRARRIWRDN-RMDSVCKQWVKYGLDFGES 116 (456) Q Consensus 45 ~~~~~~~~~k~--~~n~~~~iVd~~~~~l~g~~~~~~~~~-----d~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~a 116 (456) .+...+ ......-++.+....+.+.++++.... +....+.+.+.+.+- +|.....++. ++.-+|.+ T Consensus 62 -----~L~edm~e~D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-dA~~~G~s 135 (526) T protein:vir:79 62 -----ELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYS 135 (526) T ss_pred -----HHHHHHHhhChHHHHHHHHHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHH-hhhhhcce Confidence 111111 134556667777777788887764322 223344566666543 5777776665 57789986 Q ss_pred -EEEEEeCCCCceEE---EEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEccccccccccee Q lcl|Aclame:pro 117 -YLTCWRRDDGTATI---TADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRL 192 (456) Q Consensus 117 -~~~v~~~~~g~~~i---~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (456) ++++|...+|...+ ...+|+.+ .||+..+.. +++ .....++ ..+. + T Consensus 136 ~~Ei~w~~~~g~~~~~~l~~r~~~~F--~~~~~~~~~----l~~-~~~~~~g--~~l~-~-------------------- 185 (526) T protein:vir:79 136 CIELEWALQGREWMPLAFHHRPQSWF--QLNPEDQNE----LRL-RDNSPAG--EALQ-P-------------------- 185 (526) T ss_pred eEEEEEeecCCceeEEEeeeecccce--EeccCCCcE----EEe-cCCCCCc--eeec-C-------------------- Confidence 45778766665543 33333321 133322211 010 1100000 0010 1 Q ss_pred eccCCCcccccccccccCceeEEEE---ecCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccc Q lcl|Aclame:pro 193 VTRISDSWVPVGDAVVTGSPPPVVV---YQNPDGMGEVEPHID--IINRINRAELQLLSTMAIQAFRQRALKSTEHGLPN 267 (456) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~pv~~---~~n~~~~s~~~~v~~--liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~ 267 (456) ++.+...+ ..|+.|.|.+..+.- +...+ .+.+.+..++.|+.|.++.+=.... T Consensus 186 -----------------~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~--~~~~w~~F~E~yG~P~~igky~~~a--- 243 (526) T protein:vir:79 186 -----------------FGWIIHRPRARSGYVARSGLFRVLAWPYLFRHY--ATSDLAEMLEIYGLPIRLGKYPPGT--- 243 (526) T ss_pred -----------------CceEEEeecCCcCCccccchHHHHHHHHHHHHh--hHHHHHHHHHHcCCceEEEecCCCC--- Confidence 11111111 135678888876543 33444 5777788889999998776521110 Q ss_pred cccchhhhhhhhhhhhhccceeecCCCcceeecc--ccchHHHHHHHHHHHHHHHhhc-CCChhhhccccccchHHHHH- Q lcl|Aclame:pro 268 VDENGNAIDYASIFEAAPGALWELPPGVDIWESQ--ANDFTPMLSAIKEHIRQLSSAT-KTPLPMLMPDSANQSAEGAH- 343 (456) Q Consensus 268 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~t-~~p~~~~~~~~~n~Sg~Al~- 343 (456) .+++.+.+.. .......+....+|.+.++..+. ......|...++.+-++|++.. |=......+ .++.+.-|+. T Consensus 244 ~~~ek~~L~~-av~~i~~da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~-~g~~gS~a~g~ 321 (526) T protein:vir:79 244 ADEEKATLLR-AVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTS-QSGGGAFALGQ 321 (526) T ss_pred CHHHHHHHHH-HHHHHhcCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccc-cCcchhhhhHH Confidence 1222222211 12233344455666666554333 3344568888888888887643 211111000 0111111221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCc---cccceEEecCCCCCCHHHHHHHHHHHHhcCC-CcHHHHHH Q lcl|Aclame:pro 344 NIEKGFLFKCEDRLSIAKIGLE-AILVKALQIEGESV---EDTVDVSFESPDRVTLGEKYSAASLAKAAGE-SWASIRRN 418 (456) Q Consensus 344 ~~~~~l~~k~~~~~~~f~~~l~-~~~~l~~~~~g~~~---~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~-~s~~t~~~ 418 (456) ....-....++.-.+.+...+. ++++.++.+.+... ..-.++.|....+.+..+.++.+.+|+..|+ ++.+.+.+ T Consensus 322 vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e 401 (526) T protein:vir:79 322 VHNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYD 401 (526) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCcCCHHHHHH Confidence 2222233333344466667774 47777777765322 2234678888899999999999999999997 78888899 Q ss_pred hCCCCcc-HHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 419 ILNYNAD-QIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 419 ~~~~~~~-~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .+|+..- +.+... ... ..+.+.+...|.+ T Consensus 402 ~~gip~~~~~e~~l-~~~--------~~~~~~~~~~~~~ 431 (526) T protein:vir:79 402 KLGIPQPAKNEPVL-RPA--------AQPAILSRQHGQR 431 (526) T ss_pred HhCCCCCCCchhhc-ccc--------CCccccccccccc Confidence 9998532 111111 000 0111111111111 No 193 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=98.53 E-value=3.6e-07 Score=55.94 Aligned_cols=342 Identities=11% Similarity=0.063 Sum_probs=151.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) |+=.+|=+ ++ .............+.... ..+..+.... . +.+.=.--+|+..++-+.+-|+.- T Consensus 1 M~~~~~f~------~r---~~~~~~~~~~~~~~~~~~-~~~~~v~~~~-a----l~~~av~~cv~~ia~~ia~~p~~~-- 63 (359) T protein:vir:10 1 MSILNPFE------RR---SSITPNNYYPFMVQNGSI-VPNSLVDATE-A----LKNSDLYAVTSLISSDIAGTRFIG-- 63 (359) T ss_pred Ccccchhh------cc---ccCCCCcchhhhhccccc-cCCcccCHHH-h----hcchHHHHHHHHHHHhhhcCcccc-- Confidence 55444310 00 000000001111110000 0111111110 0 111122346777777776667641 Q ss_pred CccccHHHHHHHHHHh-c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEE Q lcl|Aclame:pro 81 SADSDLALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMR 155 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) ... +..++.+ | .-..+...+....+.+|.||+++-.+..|.+ .+..++|..+.+..++. . ++ T Consensus 64 ---~~~---~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~---~----~~ 130 (359) T protein:vir:10 64 ---NQV---FTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDD---T----LT 130 (359) T ss_pred ---chH---HHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCC---e----EE Confidence 111 2222322 3 2233446677788889999999999999976 47788888877755432 1 11 Q ss_pred EE-EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHH Q lcl|Aclame:pro 156 WW-RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDII 234 (456) Q Consensus 156 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~li 234 (456) |. ....+ .. ...|.++++.|+..... +.-....-.|.|-++.+...+ T Consensus 131 y~~~~~~~-~~-~~~~~~~evih~~~~~~------------------------------~~~~~dg~~G~spi~~~~~~i 178 (359) T protein:vir:10 131 YEVNQFDD-YP-SAKYNASEMIHVKIMAY------------------------------GVDTLHNLVGHSPLESLTSEI 178 (359) T ss_pred EEEEecCC-ce-EEEEcccceEEeccCCC------------------------------CCCccCccccccHHHHHHHHH Confidence 11 11111 11 12233444444321000 000000112566555444433 Q ss_pred HHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh-----hhccceeecCCCcceeeccccchH Q lcl|Aclame:pro 235 NRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE-----AAPGALWELPPGVDIWESQANDFT 306 (456) Q Consensus 235 D~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 306 (456) +....+.. ....+|.+ |.-+++-.. + ...++.-..+ ...++ ...|++..++.+.++..+...+.+ T Consensus 179 ~~~~~~~~---~~~~~f~ng~~~~gil~~~~-~-~l~~e~~~~~--~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d 251 (359) T protein:vir:10 179 GQQKEANR---LSLSTLKGALNPTSVVKVPQ-G-TLSSEAKDSI--RKEFEKANGGNNSGRVMVLDQSADFSTVSINADV 251 (359) T ss_pred HHHHHHHH---HHHHHHhccCCcceEEEeCC-C-CCCHHHHHHH--HHHHHHHhCccccCCceecCCCcceeeecCCHHH Confidence 33332221 12223322 322332110 0 0011111111 11121 123456677888887766543333 Q ss_pred -HHHHHHHHHHHHHHhhcCCChhhhcccc-ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 307 -PMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGF-LFKCEDRLSIAKIGLEAILVKALQIEGESVEDTV 383 (456) Q Consensus 307 -~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~Sg~Al~~~~~~l-~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i 383 (456) .|++..+....+|+.+-++|++.++... .+.+...++..+... ..-++-+...+...|.+-+ .+. ... T Consensus 252 ~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l~~~l~p~~~~l~~~l~~~~----~~~-----~~~ 322 (359) T protein:vir:10 252 ANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVNALNRFIEPLISELRIKCDSSI----GVD-----MSP 322 (359) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----ccc-----chh Confidence 4778888888999999999999997533 233554444443332 2222222222222221111 000 000 Q ss_pred eEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccH Q lcl|Aclame:pro 384 DVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ 426 (456) Q Consensus 384 ~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~ 426 (456) .+.| +.......+.+++++|+++.-.+++.+++.|-- T Consensus 323 ~~~~------d~~~~~~~~~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 323 ITDY------SNSVFKADILNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred hhhc------CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 1111 223334456678889999999999998876654 No 194 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=98.52 E-value=3.7e-07 Score=55.83 Aligned_cols=369 Identities=10% Similarity=0.058 Sum_probs=147.3 Q ss_pred CCCCCHH----------------HHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHH Q lcl|Aclame:pro 1 MTASTPA----------------EWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVR 64 (456) Q Consensus 1 ~~~~t~~----------------~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iV 64 (456) .+.-.+. .++..+++........+.....+..+...+ T Consensus 71 ~~~p~~~~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~--------------------------- 123 (576) T protein:vir:96 71 RTKRSYMKNSDNLHDVLKQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGF--------------------------- 123 (576) T ss_pred cccCcchhhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccc--------------------------- Confidence 1111110 122233333333332222222221111110 Q ss_pred HHHHHhhhcCCcccCCC----ccccH--HHHHHHHHH-----h----cChhHHHHHHHHHHhhCCeeEEEEEeCCC--Cc Q lcl|Aclame:pro 65 DSVADRIIPNGITVGGS----ADSDL--ALRARRIWR-----D----NRMDSVCKQWVKYGLDFGESYLTCWRRDD--GT 127 (456) Q Consensus 65 d~~~~~l~g~~~~~~~~----~d~~~--~~~l~~~~~-----~----n~~~~~~~~~~~~~~~~G~a~~~v~~~~~--g~ 127 (456) ++.+... .+... ...+...+. . ..+..+...++.+.+.+|.||+++..+.+ |+ T Consensus 124 ----------~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~g~ 193 (576) T protein:vir:96 124 ----------EVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNATT 193 (576) T ss_pred ----------eeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEEecCCCCc Confidence 1111000 00000 000111110 0 02334566778889999999998776554 44 Q ss_pred e-EEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccc Q lcl|Aclame:pro 128 A-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDA 206 (456) Q Consensus 128 ~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (456) + .+..++|..+.++.+... .......+++...++. ....+.++.++++.+.. T Consensus 194 ~~~L~pl~p~~V~v~~~~dg-~~~~~~~~~~~~~~~~--~~~~~~~~dii~~~~~~------------------------ 246 (576) T protein:vir:96 194 MDKFIAVDPSTIFYATDKNG-KIIKGGKRFVQVINKK--VVASFTSREMAMGIRNP------------------------ 246 (576) T ss_pred eEEEEEeCCceeEEEECCCC-ceeeeeeEEEEecCCc--eEEEecccceEEEeecC------------------------ Confidence 4 588899999988876532 2222222222222111 11122233322221100 Q ss_pred cccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhc--CCCccccccccchhhhhhhhhh Q lcl|Aclame:pro 207 VVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALK--STEHGLPNVDENGNAIDYASIF 281 (456) Q Consensus 207 ~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~--G~~~~~~~~d~~g~~~~~~~~~ 281 (456) .+- ......|.|.++.....++....+.. ....+|.+ |.-++. |.. ...++.-+.+ ...| T Consensus 247 ------~~d-~~~~~~G~Spi~~a~~~i~~~~~~~~---~~~~~f~Ng~~p~giL~~~~~~---~ls~e~~~~l--r~~~ 311 (576) T protein:vir:96 247 ------RTE-LSSSGYGLSEVEIAMKQFIAYNNTET---FNDRFFSHGGTTRGILQIKSEQ---QQSQRALENF--KREW 311 (576) T ss_pred ------CCC-cccCcccccHHHHHHHHHHHHHHHHH---HHHHHHhccCCCceEEEeCCCC---CCCHHHHHHH--HHHH Confidence 000 00011266655554444443332222 22233332 332332 211 0111111121 1112 Q ss_pred hh------hccc-eeecCCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhcccccc-c---------hHHHHH Q lcl|Aclame:pro 282 EA------APGA-LWELPPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN-Q---------SAEGAH 343 (456) Q Consensus 282 ~~------~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n-~---------Sg~Al~ 343 (456) .. ..++ ...++.+.++..+.... ...|++..+....+|+..-++|++.+|..... . +...+. T Consensus 312 ~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e 391 (576) T protein:vir:96 312 KSSFSGINGSWQVPVVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPG 391 (576) T ss_pred HHHhccccccccceeecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHH Confidence 21 1233 24567788887765432 23578888999999999999999999742110 0 111122 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCC Q lcl|Aclame:pro 344 NIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNY 422 (456) Q Consensus 344 ~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~ 422 (456) .....+...| .-+.+.+...|.+.+ +. . ....+.+.|.+..+.+.++..+.. ++..+|+++...+++.+|+ T Consensus 392 ~~~~~f~~~tL~P~~~~ie~~ln~~L---l~---~-~~~~~~~~f~r~d~~~~~e~~~~~-~~~~~G~lT~NE~R~~~gl 463 (576) T protein:vir:96 392 KKQQQSQNKGLQPLLRFIEDLINTHI---IS---E-YSDKYVFQFVGGDTKSELDKIKIL-QEEVKTYKTVNEARKEKGL 463 (576) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---ch---h-ccCceEEEeccCCHHHHHHHHHHH-HHHhcCccCHHHHHHHhCC Confidence 2221211111 111122222222111 10 1 123356677777666666555433 3455799998889999887 Q ss_pred CccHHHH-------------------HHHHHHHHHHHHHh----hcccccccCCCCC Q lcl|Aclame:pro 423 NADQIKQ-------------------DDLDRAREQITLFA----GNPVQRPQEDGSR 456 (456) Q Consensus 423 ~~~~~~~-------------------~e~~~~~e~~~~~~----~~~~~~~~~~Gs~ 456 (456) .+-+--+ .+.+..++.++... ......|....++ T Consensus 464 ~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 520 (576) T protein:vir:96 464 KPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQESTE 520 (576) T ss_pred CCCCCcceeccccccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCCC Confidence 6532100 00011111111111 1111111111111 No 195 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=98.50 E-value=4.4e-07 Score=55.43 Aligned_cols=395 Identities=12% Similarity=0.011 Sum_probs=158.5 Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcc Q lcl|Aclame:pro 1 MT---ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGIT 77 (456) Q Consensus 1 ~~---~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~ 77 (456) |+ -++|..+...-. ..+.-......+||+ +.-....+.+.. -...+...+|+..+..+.+-|+. T Consensus 6 ~~i~s~~~~~~i~~~~~---~s~~~~~~~~~~~~~--------pp~~~~~la~l~--~~n~~v~scI~~ia~~IA~l~~~ 72 (542) T protein:vir:41 6 LSIRSLEKYKAIKREEV---ESQALGETRFEEYVE--------PKVNPLVLLSLL--QVNPYHASACSIKANDIIRTGYI 72 (542) T ss_pred ccccccccchhhhhccc---cccccccccCCcccc--------CCCCHHHHHHHH--hhcHHHHHHHHHHHHHHhhCcee Confidence 11 111221111100 000000011111221 111112222211 12347789999999999999998 Q ss_pred cCCCccccHHHHHHHHHHhc--ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceE-EEEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 78 VGGSADSDLALRARRIWRDN--RMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 78 ~~~~~d~~~~~~l~~~~~~n--~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) +...... .+...+... ....+...++.+.+.+|.||+.+-.+..|.+. +.+++|..+.+..|... ++ T Consensus 73 ~~~~~~~----~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~------~~ 142 (542) T protein:vir:41 73 LEGDDEG----VVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSR------YR 142 (542) T ss_pred eecccch----hhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCe------eE Confidence 7533221 233333221 23456677888999999999999999989874 88889988877665331 11 Q ss_pred EEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC------CCCCchHH Q lcl|Aclame:pro 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN------PDGMGEVE 228 (456) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n------~~~~s~~~ 228 (456) .+.... ...+...|.....+.. ..+.... .-..- -|+|+.+ ..|.|.+. T Consensus 143 -~~~~~~-~~~~~~~y~~~~~~~~-----------------~~g~~~~---~~~~~---eIiHir~~~~~~~~~Glspi~ 197 (542) T protein:vir:41 143 -QTWDGV-NITHFKDYRYEGEINP-----------------ETGEDQD---SVGAN---ELVFIHIPSPVCSYYGVPRYV 197 (542) T ss_pred -eeecCC-cceeEEeecccccccc-----------------ccccccc---ccCcc---cEEEecCCCCCCCcccccHHH Confidence 111111 1111111111100000 0000000 00000 1223321 23566555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hH--HhhcCCCccccccccch--hhhhh-hhhhh-------hhccceeec-- Q lcl|Aclame:pro 229 PHIDIINRINRAELQLLSTMAIQAF---RQ--RALKSTEHGLPNVDENG--NAIDY-ASIFE-------AAPGALWEL-- 291 (456) Q Consensus 229 ~v~~liD~~~~~~s~~~~~~~~~~~---~~--~~i~G~~~~~~~~d~~g--~~~~~-~~~~~-------~~~~~~~~~-- 291 (456) ..+..++. ...-......+|.+ |. +.+.|...+....+... ..... ...++ ...++...+ T Consensus 198 ~~~~~i~~---~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~ 274 (542) T protein:vir:41 198 SAAPAILA---MQKIDEYNYAFFDNYTIPSYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSI 274 (542) T ss_pred HHHHHHHH---HHHHHHHHHHHHhccCCccEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeec Confidence 54433322 22221222233443 22 22233322211111110 00000 01111 112333332 Q ss_pred ----CCCcceeecccc-chHHHHHHHHHHHHHHHhhcCCChhhhccccccc-hHHHHHHHHHHHHHH-HHHHHHHHHHHH Q lcl|Aclame:pro 292 ----PPGVDIWESQAN-DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ-SAEGAHNIEKGFLFK-CEDRLSIAKIGL 364 (456) Q Consensus 292 ----~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~-Sg~Al~~~~~~l~~k-~~~~~~~f~~~l 364 (456) +.+.++..+... ....|++..+....+|++.-++|+..+|....+. ++..+......+... +.-+.+.+...+ T Consensus 275 ~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~l 354 (542) T protein:vir:41 275 PGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSIL 354 (542) T ss_pred cCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 234455444322 1234778888888999999999999997532221 111122222222111 122333333333 Q ss_pred HHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhC-CCCccHHHHH------------- Q lcl|Aclame:pro 365 EAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL-NYNADQIKQD------------- 430 (456) Q Consensus 365 ~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~-~~~~~~~~~~------------- 430 (456) .+.+ .........+.|........ ..+..+.+++++|+++...+++.+ |+.+-...-+ T Consensus 355 n~~L-------~~~~~~~~~~~f~~~~ll~~-d~~~~~~~~v~~GilT~NE~Re~L~g~~pgdd~~l~p~~~~~~~~~~~ 426 (542) T protein:vir:41 355 TDFF-------QVKFNPKTRFKFNDETLLES-DSVRNCALLVQSGVLTPAEARERLFGLDGGPDIFMVPSKGAAKSVKRQ 426 (542) T ss_pred Hhhc-------ccccCCceEEEecchhhcch-HHHHHHHHHHhCCCCCHHHHHHhhCCCCCCCccccccccccccccccC Confidence 3221 11111234566654432221 233345567889999988888744 6543211000 Q ss_pred --HHHHH-HHHHHHHhhccccccc--CCCCC Q lcl|Aclame:pro 431 --DLDRA-REQITLFAGNPVQRPQ--EDGSR 456 (456) Q Consensus 431 --e~~~~-~e~~~~~~~~~~~~~~--~~Gs~ 456 (456) ..+.. ..+..+. ..+..|. +.++. T Consensus 427 ~~n~~~~~~~~~~k~--~~k~~~~~~~~~~~ 455 (542) T protein:vir:41 427 ERNYEKNQIREIRKI--YAKYRPRFNEIISS 455 (542) T ss_pred CcCCCCCchhhhhhc--ccccCccccccccc Confidence 00000 0011111 0111111 11111 No 196 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=98.48 E-value=4.9e-07 Score=55.20 Aligned_cols=371 Identities=7% Similarity=-0.025 Sum_probs=151.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccH Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDL 86 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~ 86 (456) +-++.++...+........ ....- ... .......+ .. +.+.-...+|+..++-+..-|+.+... +... T Consensus 1 Mg~~~~~~~~~~~~~~~~~-~~~~~----~~~-~~~~~~~~---~~--l~~~~v~~~v~~Ia~~ia~~p~~~~~~-~~~~ 68 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLN-LTDTV----WCS-IPSEKLKE---LS--IKKWAIDSCANKIANTLSCAEVLTYEK-GEEV 68 (395) T ss_pred CchHHHHHhhhcccccccc-cccch----hhc-cccccchh---hh--hhhHHHHHHHHHHHHHHhhCceeeccC-Cccc Confidence 3344444333322111110 00000 000 00011111 00 122234567777777777778876432 2222 Q ss_pred HHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecC Q lcl|Aclame:pro 87 ALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLD 161 (456) Q Consensus 87 ~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 161 (456) ...+..++.. |. -..+...++..++.+|.||+++..+..+ .|..+........+ ..+..... T Consensus 69 ~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~~-------~~~~~~~~~~~~~~------~~~~~v~~ 135 (395) T protein:vir:40 69 RKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYIY-------VADSFTKNDKSLYE------NTYTEVTL 135 (395) T ss_pred cchHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCcee-------ecCCcccccccccc------ceeeeeee Confidence 3334444432 32 2345566788889999999876443210 11111100000000 00000000 Q ss_pred CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 162 AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAE 241 (456) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~ 241 (456) ........|.++.++|+ .+++..+.+.+.. +...+.... T Consensus 136 ~~~~~~~~~~~~evih~--------------------------------------r~~~~~~~~~~~~---l~~~~~~~~ 174 (395) T protein:vir:40 136 KDLTLKKEFKESEVLHL--------------------------------------TLNNESIKSIIDG---FYLLYGDLL 174 (395) T ss_pred cCceeeeeeccccEEEe--------------------------------------ecCCCCccccchh---HHHHHHHHH Confidence 00000011122222221 1122222222222 223333333 Q ss_pred HHHHHHHHHHhhh--HHhhcCCCccccccccchhhhhh--h---hhhhhhccceeecCCCcceeeccccch-HHHHHH-- Q lcl|Aclame:pro 242 LQLLSTMAIQAFR--QRALKSTEHGLPNVDENGNAIDY--A---SIFEAAPGALWELPPGVDIWESQANDF-TPMLSA-- 311 (456) Q Consensus 242 s~~~~~~~~~~~~--~~~i~G~~~~~~~~d~~g~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 311 (456) +...+...+...+ .+++..... ..++.-+.+.. . .......+.++.++.+.++.++..... ..+++. T Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~ 251 (395) T protein:vir:40 175 TAAVNKYKKLNSRKIIVKLKAMFG---QTPEAEEKLRLMLSERMKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKK 251 (395) T ss_pred HHHHHHHHhcCCCCceEEEecccC---CCHHHHHHHHHHHHHHHHHhhccCCceeecCCCceEEeccCChhhhhHHHHHH Confidence 3333322221111 111111110 11111111111 0 111124455677888888877653222 224432 Q ss_pred -HHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccccceEEe Q lcl|Aclame:pro 312 -IKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGE---SVEDTVDVSF 387 (456) Q Consensus 312 -~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~---~~~~~i~v~f 387 (456) .+..+.+||.+-++|++.+++..+|.+...+.+....|.-.+...+..+...| ... .....+++.+ T Consensus 252 ~~~~~~~~Ia~~fgVPp~~l~~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~kL----------l~~~~~~~g~~i~fd~ 321 (395) T protein:vir:40 252 MIDDVFEMVANSFNIPLGLAKGDTVGLSEQVNSFLMFSINPIAEMFTDEGNRKF----------YGRDSVLERTYMKLDT 321 (395) T ss_pred HHHHHHHHHHHHhCCCHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CChhhhcCCceEEEec Confidence 23446789999999999998766665554444444444443333332222211 111 1223345555 Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH---HHHHHHHHHHHHHHHhhcc--cccccCCCCC Q lcl|Aclame:pro 388 ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQDDLDRAREQITLFAGNP--VQRPQEDGSR 456 (456) Q Consensus 388 ~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~---~~~e~~~~~e~~~~~~~~~--~~~~~~~Gs~ 456 (456) ....-.+..+.++++.++++.|+++.-.+++.+|+.|-+- ++.-.-..-...+...... ++..+.+|.- T Consensus 322 ~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~~kgge~~~~~~~~ 395 (395) T protein:vir:40 322 TRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTKNYAPLGENEEDLKGGDINENKGDS 395 (395) T ss_pred hhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCceeeeccccccccccccccCCCCCCCCcCCC Confidence 5666778899999999999999999999999999876421 1110000000000000000 0011111111 No 197 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=98.47 E-value=5.4e-07 Score=54.95 Aligned_cols=371 Identities=8% Similarity=-0.013 Sum_probs=151.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc-cc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD-SD 85 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d-~~ 85 (456) +-+++++..+... .....+.+. .......... +.......+|+.+++-+..-|+.+....+ .. T Consensus 1 MGlf~~~~~~~~~------~~~~~~~~~--------~~~~~~~~~~--~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~~~ 64 (395) T protein:vir:98 1 MGILDFFSFKKSG------TLSDDDSGS--------TTSEKLTNVV--LKEDALYKCVNYLARIISKSTFRLKTPEKLTE 64 (395) T ss_pred CcchhhhcCCCcc------cccccccch--------hhhhhcchhh--hhhHHHHHHHHHHHHHHhhCceeEEecCCccc Confidence 2233332211100 000001110 0000000000 11234456778888877777876533221 11 Q ss_pred HHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEec Q lcl|Aclame:pro 86 LALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDL 160 (456) Q Consensus 86 ~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 160 (456) ....+..++.. |. -..+...++..++.+|.||+++-.+..+ . + |......+. +.. ..++... T Consensus 65 ~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~--~---~-~~~~~~~~~------~~~-~~~~~~~ 131 (395) T protein:vir:98 65 NQKDWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGI--Y---V-ADSFTQDKK------ISG-SQFKVSR 131 (395) T ss_pred ccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCce--e---c-CCccccccc------ccC-cccceee Confidence 12234444432 32 2345567788899999999887655321 1 1 111111100 000 0000000 Q ss_pred CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCC----CCchHHHHHHHHHH Q lcl|Aclame:pro 161 DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPD----GMGEVEPHIDIINR 236 (456) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~----~~s~~~~v~~liD~ 236 (456) .........|.++.+.++. +.+.. +.|-+.....++.. T Consensus 132 ~~~~~~~~~~~~~evih~k--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 173 (395) T protein:vir:98 132 VQGQTYEKTFTFDQVIYLK--------------------------------------NDNSDLMSKVESLWEEYGELLGH 173 (395) T ss_pred ecCceeeeEecCccEEEec--------------------------------------CCCCCccccccchhhhHHHHHHH Confidence 0000001112222222221 01111 11111111111111 Q ss_pred HHHHHHHHHHHHHHHh---hhHHhhcCCCc--cccccccchhhhhh-hhhhhhhccceeecCCCcceeecccc------- Q lcl|Aclame:pro 237 INRAELQLLSTMAIQA---FRQRALKSTEH--GLPNVDENGNAIDY-ASIFEAAPGALWELPPGVDIWESQAN------- 303 (456) Q Consensus 237 ~~~~~s~~~~~~~~~~---~~~~~i~G~~~--~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------- 303 (456) ..... .......++. .+...+.+... +....+.....+.. ........+.++.++.+.++.++... T Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~ 252 (395) T protein:vir:98 174 VINNQ-KIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKS 252 (395) T ss_pred HHHHH-HHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHHhhhhcCCcceeecCCCceeEecccccccccCh Confidence 10000 0000111111 11111111100 00000000001111 11122334445667777777665422 Q ss_pred chHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccc Q lcl|Aclame:pro 304 DFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-EDT 382 (456) Q Consensus 304 ~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-~~~ 382 (456) ....+.+..+..+.+||.+-++|++.+++..+|.+...+.+....|.-.+...+..+...| ..... ... T Consensus 253 ~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kl----------l~~~~~~~g 322 (395) T protein:vir:98 253 YVDDIKKLKDQYMAEFAEMLGIPISLLHGDIADNQKNYELLLEGPIESLITNIVDGLEYAI----------FDKSETLQG 322 (395) T ss_pred hHHHHHHHHHHHHHHHHHHhCCCHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CChhhhcCc Confidence 2234677777778899999999999998665555555555555555554444443333222 11111 122 Q ss_pred ceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 383 i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs 455 (456) +.+.|......+..+.++++.++++.|+++.-.+++.+|+.|-+......-...-....+...-++...+.++ T Consensus 323 ~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~gD~~~~~~n~~~~~~~gge~~~~~~~ 395 (395) T protein:vir:98 323 SFIKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIGLPELPDGLGKVLYMTKNYESVLERGGEVDEEVET 395 (395) T ss_pred ceeeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceecccccCCCCCCCCC Confidence 3566777778889999999999999999999999999998763221100000000000000111122223333 No 198 >protein:vir:3139 Length: 599 # NCBI annotation: hypothetical protein # Family: family:all:1548 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640321;genbank:gi:21234402;genbank:GeneID:956054 Probab=98.44 E-value=6.3e-07 Score=54.60 Aligned_cols=437 Identities=9% Similarity=0.019 Sum_probs=215.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGM-------SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~-------~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) -+-+++.+|+.+++..|.... ...+.+++|-... +. +++....-...+++..|-.-.+++.+..++++ T Consensus 13 ~~~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~e~~~yi~~~-~t----r~t~~~~~~w~~s~t~~k~~~~~~~l~a~~~~ 87 (599) T protein:vir:31 13 EGRDDDRAFIDELVVLFTNMENARAQKDREDKELMDYIDAT-DT----RKTSNSKLPFKNSTTINKLAHLHLMITTSYME 87 (599) T ss_pred hccCchHHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhh-cc----cccccCCCCcccccchHHHHHHHHHHHHHHHh Confidence 224667788888887775532 2245566773332 11 12222222334456677777788888888775 Q ss_pred CCc------ccC--CCc-cccHHHHH-----HHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC------CC-------C Q lcl|Aclame:pro 74 NGI------TVG--GSA-DSDLALRA-----RRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR------DD-------G 126 (456) Q Consensus 74 ~~~------~~~--~~~-d~~~~~~l-----~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~------~~-------g 126 (456) --| .+. +++ ++....++ ..-+.+.+|...+..++.+.+.+|.||.++..- +| . T Consensus 88 ~~fp~~~w~d~~~~~~~~~~~~~~~~i~~yi~~Kl~e~~~~~~~~~~v~d~i~~G~~vat~~~er~~~~~~d~~v~~~~~ 167 (599) T protein:vir:31 88 HLLPNRNWVDFVGFDNDSVNAEKREIARSYVRGKVEASNLEGVIERMVDDFAVRGFCVAHTRHVKRMTVTAENQVIKNYS 167 (599) T ss_pred hhcCCccceEeeecCCchhHHHHHHHHHHHhhhhhhhcchHHHHHHHHhhhcccCceeEeeeEEEcceeecccccccccc Confidence 432 211 111 22222222 223455688899999999999999998876411 12 2 Q ss_pred ceEEEEEccceEEEEeeCCCCceeEEEEEEEEecC--------Cce-------------eEEE--EEeCC---------- Q lcl|Aclame:pro 127 TATITADSPETMVVSVDPLQPWRIRAAMRWWRDLD--------AES-------------DFAI--VWSGD---------- 173 (456) Q Consensus 127 ~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------~~~-------------~~~~--~~~~~---------- 173 (456) .|++..++|..+|+=.+-++......++|.+.... +.. .+.. -+..+ T Consensus 168 ~P~~ervsP~Di~~Dp~A~si~d~~fivRs~~Tk~~L~~l~~~~~~~~y~~d~~~~~~~~~~~~~~~~~d~~~~~~g~D~ 247 (599) T protein:vir:31 168 GTVTERLSPSDVFWDVTADSLPKAAKCIRQLYTLGSLKREIEEGTFPLMSMEDFQKLREERRTIREALADGYNGRRKFDS 247 (599) T ss_pred cceEEeecccceeeCCCCCCCCcceeeeehhhhHHHHHHHhccCCccccchHHHHHHHhhccCCCccccchhhhhhhccc Confidence 37899999998876543333334444445433100 000 0000 00000 Q ss_pred -------eEEEEEEcc-----ccccccc---------ceeeccCCCccc-ccccccccCc-eeEEEEe-----cCCCCCc Q lcl|Aclame:pro 174 -------GWQKFARPC-----FVQSSSR---------RRLVTRISDSWV-PVGDAVVTGS-PPPVVVY-----QNPDGMG 225 (456) Q Consensus 174 -------~~~~~~~~~-----~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~-~~pv~~~-----~n~~~~s 225 (456) .++.|+... .+|.... ..+......... ....-|.+.+ .|.++.. .+.+|.| T Consensus 248 ~~~d~~~~~~eY~~~~~VevLeywGd~ydee~d~~~~~~ViTi~g~~~liR~e~np~~~g~~Pyvv~~~~P~~~~~yG~G 327 (599) T protein:vir:31 248 LHKKGYGSMMNYINEGVVEVLTFMGDFYDEENDELWNNYEITVIDRKIIGRKQSKDTWDGSQNLHIAVYEFQKDTLCPIG 327 (599) T ss_pred cccccccchhhhcccchhhhhhhhhhhhcccCCccccceEEEEecCcEEeecccCCCCCCCCCeEEEEeeeeccccCCCC Confidence 011111000 0010000 001111111111 1111122333 2433221 3567999 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeeccc-cc Q lcl|Aclame:pro 226 EVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQA-ND 304 (456) Q Consensus 226 ~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 304 (456) .+..++.+++.+|.+.-.+.+..+.+..|++...|.-.+ + | ..-.+|.++.+...+.+..+.+ ++ T Consensus 328 ~l~~~~gaQ~~lN~~~Ng~iD~~~~~l~p~l~~~~dl~~-e--D-----------~~~~P~~v~~~~d~~~vq~~~p~s~ 393 (599) T protein:vir:31 328 PLHRLTGMQYKLDKRENFREDLHDRFLHPSLKKVGDVRE-K--G-----------MRGGPNHVFEVEETGDVQYMTPPAE 393 (599) T ss_pred CchhcchHHHHHHHHHHHhhhhhhhhhcccccccccccc-c--C-----------ccCCCCcceeecCCCccccccCchh Confidence 999999999999998777777778888887666654111 0 1 1123566776655555543332 22 Q ss_pred hHHHHHHHHHHHHHHHhhcCCChhhhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh----cCCC Q lcl|Aclame:pro 305 FTPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEA-ILVKALQI----EGES 378 (456) Q Consensus 305 ~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~-~~~l~~~~----~g~~ 378 (456) ..+-...+......+-..||+|...-|..+ ++..+..++......-.....+.+.|..++-+ +++.+++. .... T Consensus 394 ~~~a~~~is~~e~~mee~sGvp~~~~G~~~ag~~TA~~is~l~naa~~~~~~~vr~~e~~~lepll~~l~e~~~~f~D~~ 473 (599) T protein:vir:31 394 VLQPDNQLSITLQLMEDLSGAPKESIGQRTAGEKTKFEVQLLDQGQNKVFRRKVKKFERELLTPVLNDYLEQGRNHLDAS 473 (599) T ss_pred hhhHHHHHHHHHHHHHHhhccchhhcCCcccchhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc Confidence 222222344444455567899998888554 34577777777777777777788888877544 55433322 1111 Q ss_pred c--------------------cccceEEecCCCCCCHHHHHHHHHHHHh-------cCCC---cHHHH---H----HhCC Q lcl|Aclame:pro 379 V--------------------EDTVDVSFESPDRVTLGEKYSAASLAKA-------AGES---WASIR---R----NILN 421 (456) Q Consensus 379 ~--------------------~~~i~v~f~~~~~~~~~e~ad~~~kl~~-------~g~~---s~~t~---~----~~~~ 421 (456) + +-.-.+...+.-....++..++.++|.+ .++. +++.. + .+.. T Consensus 474 ~tiri~~~e~~~~~f~~i~redl~~~~~~v~~Ga~~v~ere~~~q~l~~il~~~~~q~~~P~~~~k~l~~~l~~~~~l~~ 553 (599) T protein:vir:31 474 DTIKTFNSELGTATFLDITADDLNLNGQMVAQGATLFAEKANTLQNLNAILGGPLGAALAPHMSRTKLFNAVEYLGDLDA 553 (599) T ss_pred cceeeecccccceeeEEeehhhhhCCeeeeechhhHHHHHHHHHHHHHHHhcccCCCccchhhHHHHHHHHHHHHHhccc Confidence 0 0011122333333445666666666542 1222 33211 1 1122 Q ss_pred CC--ccHH----H----H-HHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 422 YN--ADQI----K----Q-DDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 422 ~~--~~~~----~----~-~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) |. +..+ + . ++++.++++..++..-....|..|.-+ T Consensus 554 ~~~~~~~va~~eqq~~~~m~Q~~lq~~~~~~~~~~~~~~~~~~~~~ 599 (599) T protein:vir:31 554 YGIFTFGIGVQEDQQLARMAQKSTQQTEETALTQEEVGGPTTDTGQ 599 (599) T ss_pred cccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCCCcccCC Confidence 22 1111 1 1 123334455556655555556555555 No 199 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=98.44 E-value=6.3e-07 Score=54.57 Aligned_cols=363 Identities=12% Similarity=0.042 Sum_probs=152.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCccccH Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSDL 86 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~ 86 (456) +-|++.+.++... ....|.+.- ...... .. -........+|+..++-+..-|+.+.... ... T Consensus 1 Mg~f~~~f~~~~~-------~~~~~~~~~-----~~~~~~---~~--a~~~~~v~~~i~~ia~~ia~~p~~~~~~~-~~~ 62 (385) T protein:vir:95 1 MGLFDSVFKRHSE-------LSWMYDLEF-----LQDKSK---KA--YLKQIALNTVVEMVARTISQSEFRVMKNN-TKE 62 (385) T ss_pred CchhhhhhccCcc-------cccccchhh-----hhccch---hh--hhhhHHHHHHHHHHHHHHcccceeeeecC-ccc Confidence 2244444332211 111111110 000000 00 01233456778888888888888763221 122 Q ss_pred HHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEE--EEEccceEEEEeeCCCCceeEEEEEEEEe Q lcl|Aclame:pro 87 ALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTATI--TADSPETMVVSVDPLQPWRIRAAMRWWRD 159 (456) Q Consensus 87 ~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i--~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 159 (456) ...+..++.. | .-..+...++.+.+.+|.||++. +.+|...+ ....+.. ..++.+ .++.. T Consensus 63 ~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~--~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~ 129 (385) T protein:vir:95 63 KGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVK--NDEGHFFVADDFEKEDE-LGLYSH----------RFTNV 129 (385) T ss_pred cchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEE--ecCCCeeeccccccccc-cccccc----------cceee Confidence 2234444432 3 22455677888999999999765 33432211 1111111 011000 00000 Q ss_pred cCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 160 LDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINR 239 (456) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~ 239 (456) ..........+.++.+.++... +.. ....|.|.++.....++ T Consensus 130 ~~~~~~~~~~~~~~eiih~~~~--------------------------~~~--------~~~~G~s~~~~~~~~i~---- 171 (385) T protein:vir:95 130 LVNDFEFKRVFTMDDVIYLKYN--------------------------NQK--------LDAFSLGLFEDYGEIFG---- 171 (385) T ss_pred eecccceeeeeccccEEEecCC--------------------------CCC--------cccccchHHHHHHHHHH---- Confidence 0000000011112222221100 000 00124443333322222 Q ss_pred HHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh-----hhhhhhhccceeecCCCcceeecccc-------chHH Q lcl|Aclame:pro 240 AELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY-----ASIFEAAPGALWELPPGVDIWESQAN-------DFTP 307 (456) Q Consensus 240 ~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 307 (456) .......+...+.-++.... .....++.-+.+.. ........+.++.++.+.++.++... ...- T Consensus 172 ---~~~~~~~~~~~~~g~l~~~~-~~~~~~e~~~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~ 247 (385) T protein:vir:95 172 ---RMIDLQMLNNQIRGILKVDA-TKFYNKEKQKELQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSE 247 (385) T ss_pred ---HHHHHHHhcCCCceEEEeCC-ccCCCHHHHHHHHHHHHHHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHH Confidence 22222222222211111100 00111111111111 01111233446667888887665421 1234 Q ss_pred HHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEe Q lcl|Aclame:pro 308 MLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSF 387 (456) Q Consensus 308 ~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f 387 (456) |++..+....+||.+-++|++.+++..+|.+.....+....+.-.+...+..+...| +. ........+++.+ T Consensus 248 ~~e~~~~~~~~Ia~~fgVpp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~~L-------~~-~~~~~~~~~~fd~ 319 (385) T protein:vir:95 248 LNELKKTVLTDVARMIGVPPSLVLGEMADLEKTIESYLQFCINPLLRKIEAELNSKF-------FY-QDEYLNDDMHIKV 319 (385) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC-hhhcccceEEEec Confidence 788888888999999999999997655554444444444444443333332222211 00 0111122355555 Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH--H-HHHHHHHHHHHHHHhhcccccccCC Q lcl|Aclame:pro 388 ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI--K-QDDLDRAREQITLFAGNPVQRPQED 453 (456) Q Consensus 388 ~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~--~-~~e~~~~~e~~~~~~~~~~~~~~~~ 453 (456) ......|..+.++++.++++.|+++.-.+++.+|+.|-+. . +.-.-..-..++.+ -+.+..++ T Consensus 320 ~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~gd~~~~~~n~~~~~~~---kgge~~~e 385 (385) T protein:vir:95 320 VGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPADDPELDKFIITKNLQSADAF---KGGESNEE 385 (385) T ss_pred hhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceecccc---cCCCCCCC Confidence 5666788889999999999999999999999999876321 1 10000000000000 00000111 No 200 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=98.43 E-value=7e-07 Score=54.33 Aligned_cols=375 Identities=9% Similarity=-0.011 Sum_probs=154.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcccc- Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSD- 85 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~- 85 (456) +-|+.++..........-..+...+.+.... .+..+... +-+.+.-...+|+..++-+..-|+.+...+.+. T Consensus 1 MGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vt~~-----~al~~~~v~~~i~~Ia~~iA~lp~~v~~~~g~~~ 73 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAEKRGYLDNVLGKSIRY--SGVYVTDS-----NILQSSDVYELLQDISNQMVLADIVVEDEFGNEI 73 (394) T ss_pred CchhhhhhhhccCCCCchhhhhhhhhccccc--CccccChh-----hhhccHHHHHHHHHHHHhhcccceEEEcCCCccc Confidence 3344443322211111101112222221111 11111110 112234567788888888888888764322111 Q ss_pred HHHHHHHHHHh-cC---hhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecC Q lcl|Aclame:pro 86 LALRARRIWRD-NR---MDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLD 161 (456) Q Consensus 86 ~~~~l~~~~~~-n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 161 (456) ....+..++.+ |. ...+...++.+++.+|.||+++-.+.-+ -+..+.+..++.. ..+|.. T Consensus 74 ~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~-------~~~~~~~~~~~~~-------~~~~~~-- 137 (394) T protein:vir:62 74 KDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIH-------LASNVFTELDDNL-------VEHFNI-- 137 (394) T ss_pred chhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceee-------ccccceEEECCce-------EEEEee-- Confidence 12223344433 32 2355667888899999999987322111 1223333333210 011110 Q ss_pred CceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 162 AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAE 241 (456) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~ 241 (456) +. ..|.++.+.|+.. . + ...-.|.|.++.....++....+. T Consensus 138 ~~----~~~~~~eiih~r~-------------------------------~-~---~d~~~G~s~~~~~~~~i~~~~~~~ 178 (394) T protein:vir:62 138 GG----HEIPPCMIRHVKN-------------------------------I-G---ADHLRGKGILDLGRDTLEGVMSAE 178 (394) T ss_pred CC----EEechhheEEecC-------------------------------c-C---CCCccccChHHHHHHHHHHHHHHH Confidence 00 0111222222110 0 0 000125565554443333333222 Q ss_pred HHHHHHHHHHhhhHHhhcCCCccccccccchhhhh--hhhhhh--hhccceeecCCC--cceeeccccc-hHHHHHHHHH Q lcl|Aclame:pro 242 LQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAID--YASIFE--AAPGALWELPPG--VDIWESQAND-FTPMLSAIKE 314 (456) Q Consensus 242 s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~--~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~ 314 (456) .-......-.+.|.-+++- .......++.-..+. ...... ...|++..++.+ .++..+.... ..-+++..+. T Consensus 179 ~~~~~~~~ng~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~ 257 (394) T protein:vir:62 179 KTLTDKYKKGGLLTFLLNL-DAHINPQNGAQSKLINAILDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNV 257 (394) T ss_pred HHHHHHHHccCCcceEEEe-CCCCCcCHHHHHHHHHHHHHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHH Confidence 1111111112233333321 110000011111111 001111 122344444444 3444444322 2337777788 Q ss_pred HHHHHHhhcCCChhhhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCC Q lcl|Aclame:pro 315 HIRQLSSATKTPLPMLMPDS-ANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRV 393 (456) Q Consensus 315 ~~~~i~~~t~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~ 393 (456) ...+||..-++|+..++... +|.+.....+....|.-.+...+ ..|.+ .+.+......+.+.|...... T Consensus 258 ~~~~Ia~~fgVPp~~lg~~~~sn~e~~~~~~~~~~l~P~~~~ie----~~l~~------kll~~~~~~~~~~~fd~~~~~ 327 (394) T protein:vir:62 258 YKKDLGKFLGINVDTYTELIKEDIEKAMMYIHNKAVRPIMKNFE----DHLSL------LFYAQNSGKRIKFKINILDFV 327 (394) T ss_pred HHHHHHHHhCCCHHHcCCCCCcCHHHHHHHHHHHHHHHHHHHHH----HHHhh------hhcCccccCceEEEechhhhc Confidence 88999999999999997532 22222222222222222221111 11111 122222334567888776666 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH---HHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIK---QDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~---~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +....++++.+++++|+++...+++.+|+.+-+.. +.-....-..++.. ...+.+..+|-. T Consensus 328 ~~~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~gd~~~~~~n~~~~~~~--~~~~~~~kgge~ 391 (394) T protein:vir:62 328 TYSNKTNIGYNLVRTAITSPDNVADMLGFPKQNTKESQAIYISNDVTEIGKK--EATDGSLGGGEE 391 (394) T ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeccccccccccc--ccccccCCCCCC Confidence 66778888999999999999999999998763111 11100000011110 111122223332 No 201 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=98.42 E-value=7.1e-07 Score=54.29 Aligned_cols=382 Identities=9% Similarity=-0.001 Sum_probs=177.7 Q ss_pred CC--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------cccccCcccchhhhhhhhhhcCChH Q lcl|Aclame:pro 1 MT--------------ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDA------PLPELTRNTSAAWRSFQREARTNWG 60 (456) Q Consensus 1 ~~--------------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~------~i~~~~~~~~~~~~~~~~k~~~n~~ 60 (456) || ...+. +.+.+ ..+. + ..++--+-. .|+...-.....+... ...... T Consensus 1 m~~~i~~~~g~p~~~~~~~~~-~~~~i----a~~~-~---~~~~~~~~~~~~~~~~iLr~~~~~~~~y~~m---~~D~~i 68 (491) T protein:vir:10 1 MSKGLWVSPTEFVTFGEPDKS-LSSQI----ATRA-R---SIDFFALGMYLPNPDPVLKALGKDIRVYREL---RADAHV 68 (491) T ss_pred CCCceeCCCCCccCcccCChH-HHHHH----Hhhh-c---ccccccccCCccchHHHHHhcCCCHHHHHHH---hhChHH Confidence 33 22221 12221 1111 0 001100000 0100000000111111 234567 Q ss_pred HHHHHHHHHhhhcCCcccCCC-ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCee-EEEEEeCCCCceE---EEEEcc Q lcl|Aclame:pro 61 LMVRDSVADRIIPNGITVGGS-ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGES-YLTCWRRDDGTAT---ITADSP 135 (456) Q Consensus 61 ~~iVd~~~~~l~g~~~~~~~~-~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a-~~~v~~~~~g~~~---i~~~~p 135 (456) .-+++....-+.+.++++..+ ++....+.+.+.+.+-.|+....++. ++.-||.+ ++++|...+|... +..++| T Consensus 69 ~s~l~~Rk~av~~~~w~i~~~~~~~~~~e~v~e~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~ 147 (491) T protein:vir:10 69 GGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPA 147 (491) T ss_pred HHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeecc Confidence 778888888888999887543 33445667888887778888888775 78889987 4567876666554 344444 Q ss_pred ceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEE Q lcl|Aclame:pro 136 ETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPV 215 (456) Q Consensus 136 ~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 215 (456) +.+ .||+..+. + +...++......+. ..+.+.. T Consensus 148 ~~f--~~d~~~~l------~-~~~~~~~~~g~~l~--------------------------------------~~k~i~~ 180 (491) T protein:vir:10 148 DWF--VYDPENQL------R-FRSKDHWMQGEELP--------------------------------------ARKFLVP 180 (491) T ss_pred cce--eeccCCce------E-EecCCCCCCcceec--------------------------------------CCCEEEE Confidence 322 23322110 0 11111100000010 0111111 Q ss_pred EE---ecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecC Q lcl|Aclame:pro 216 VV---YQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELP 292 (456) Q Consensus 216 ~~---~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 292 (456) .+ ..|+.|.|.+..+....---+..+.+.+...+.|+.|.++.+-.... .+++.+.+.. .......+....++ T Consensus 181 ~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a---~~~ek~~l~~-al~~~~~~a~~viP 256 (491) T protein:vir:10 181 RQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSA---SDGEKNLLLD-CLEDMVQDAVAVVP 256 (491) T ss_pred EecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCC---CHHHHHHHHH-HHHHHhcCcEEEec Confidence 11 13667888888765544444556777888889999998776521111 1222222211 12233344455666 Q ss_pred CCcceeeccc----cchHHHHHHHHHHHHHHHhhc-CCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 PGVDIWESQA----NDFTPMLSAIKEHIRQLSSAT-KTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAI 367 (456) Q Consensus 293 ~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~t-~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~ 367 (456) .+.++..+.. .+...|...++.+-++|++.. |=.... ++.+++..|+. ...-....++.-.+.....+.++ T Consensus 257 ~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt-~~~gs~a~~~v---h~~v~~di~~~D~~~i~~tln~l 332 (491) T protein:vir:10 257 DDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALLGQNQTT-EATSTRASAQA---GLEVTDDIRDGDKAVVSEAMNML 332 (491) T ss_pred CCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHhhhhccc-CcccchhHHHH---HHHHHHHHHHHHHHHHHHHHHHH Confidence 6665543322 233457777777777777533 211111 11112222221 22222333333445666677777 Q ss_pred HHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCC-CcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 368 LVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGE-SWASIRRNILNYNADQIKQDDLDRAREQITLFAGNP 446 (456) Q Consensus 368 ~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~-~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~ 446 (456) ++-++.+.+.... ...+.|..+. ......++.+.+|+..|+ ++.+.+.+.+|+.+.+..+.......... ... T Consensus 333 i~~l~~~N~~~~~-~p~f~~~~~~-e~~~~~a~~~~~L~~~G~~i~~~~i~e~~Gip~~~~~~~~~~~~~~~~----~~~ 406 (491) T protein:vir:10 333 IRWICDLNFDGAD-RPVFDMWEQE-QVDEIQAGRDQKLTQAGARFTPAYFKRAYNLQDGDLDERPLPVSAVDT----VGA 406 (491) T ss_pred HHHHHHhcCCCCC-cceEEecCcC-chhHHHHHHHHHHHhCCCcCCHHHHHHHhCCCCCCcCccccccCCCCC----ccc Confidence 7766666654332 2345665443 223567999999999997 78888888999864322211100000000 000 Q ss_pred cccccCCCCC Q lcl|Aclame:pro 447 VQRPQEDGSR 456 (456) Q Consensus 447 ~~~~~~~Gs~ 456 (456) .......+.. T Consensus 407 ~~~~~~~~~~ 416 (491) T protein:vir:10 407 ASFAEFEAPD 416 (491) T ss_pred ccccccCCCC Confidence 0000000000 No 202 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=98.42 E-value=7.3e-07 Score=54.23 Aligned_cols=378 Identities=8% Similarity=-0.017 Sum_probs=178.4 Q ss_pred HHH--HHHHHHHHHHHHHHHHHHhhccC----cccc-cCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCc Q lcl|Aclame:pro 10 LPV--LTKRIDDGMSRVRLLARYSNGDA----PLPE-LTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA 82 (456) Q Consensus 10 ~~~--l~~~~~~~~~~~~~~~~YY~g~~----~i~~-~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~ 82 (456) +++ |..+......-.+....|.-|-. +++. ........+... .......-+++....-+.+.++++.... T Consensus 1 v~~~~l~~e~at~~~~~d~~~~~~~~l~~~~~~il~~a~~g~~~~y~~l---~~D~~i~s~l~~rk~av~~~~w~i~p~~ 77 (488) T protein:vir:99 1 MEKPALGREIATSGDGRDITRPFISGLQVPNDSILQRRGGNDLRVYEEI---LSDAQVKTVWGQRQLAVVSREWKVEAGG 77 (488) T ss_pred CCccchhHHHHHHHhhhhhhccccCCCCCCChHHHHhhccCCHHHHHHH---hhChHHHHHHHHHHHHHhcCCceEEcCC Confidence 111 11111111111111122222210 0000 000000111111 2245667788888888889998885433 Q ss_pred cc----cHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeE-EEEEeCCCCceEE---EEEccceEEEEeeCCCCceeEEEE Q lcl|Aclame:pro 83 DS----DLALRARRIWRDNRMDSVCKQWVKYGLDFGESY-LTCWRRDDGTATI---TADSPETMVVSVDPLQPWRIRAAM 154 (456) Q Consensus 83 d~----~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~-~~v~~~~~g~~~i---~~~~p~~~~~i~d~~~~~~~~~~i 154 (456) ++ +..+.+.+.++.-.|+..+.++. ++.-||.+. +++|.-.+|...+ ...+|+. ..||+..+. T Consensus 78 ~~~~~~~~ae~v~~~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~--f~~d~~~~l------ 148 (488) T protein:vir:99 78 DRPIDQAAAEHLEQQLQRVGWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVRNRRR--FRYDQDGGL------ 148 (488) T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeeecccc--eeecCCCce------ Confidence 32 23345666777667888887775 688899874 5678666666543 3333332 123322110 Q ss_pred EEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEE---ecCCCCCchHHHHH Q lcl|Aclame:pro 155 RWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVV---YQNPDGMGEVEPHI 231 (456) Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~---~~n~~~~s~~~~v~ 231 (456) ++....+ ... + . ..+.....+...+ ..|+.|.|.+..+. T Consensus 149 ~~~~~~~-~~~--------------------------------g--~---~lp~~~~~i~~~~~~~~g~p~g~gLl~~~~ 190 (488) T protein:vir:99 149 RLLTPNN-MFE--------------------------------G--E---PCPAPYFWHFSTGADNDDEPYGLGLAHWLY 190 (488) T ss_pred EEeccCC-CCC--------------------------------c--c---ccccCceEEEEeecCCCCCcccchHHHHHH Confidence 0000000 000 0 0 0000011111111 13667888887765 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCccee--eccccchHHHH Q lcl|Aclame:pro 232 DIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIW--ESQANDFTPML 309 (456) Q Consensus 232 ~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 309 (456) ...--=+..+.+.+...+.|+.|.++.+-...+ ..+++.+.+.. .......+....+|.+.++. +........|. T Consensus 191 w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~--a~~~ek~~l~~-av~~~~~~~~~viP~~~~ie~~ea~~~~~~~~~ 267 (488) T protein:vir:99 191 WPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKT--ATPEDKAKLLA-ALHAIQTDSAIIMPAGMQAELLEAGRSGTADYK 267 (488) T ss_pred HHHHHHHhhHHHHHHHHHHcCCceeeeecCCCC--CCHHHHHHHHH-HHHHHhcCcEEEecCCceeEEeecCCCChHHHH Confidence 432222334677777889999997765421101 11122222211 12223334445556655543 33334445677 Q ss_pred HHHHHHHHHHHhhc--CCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccceEE Q lcl|Aclame:pro 310 SAIKEHIRQLSSAT--KTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLE-AILVKALQIEGESVEDTVDVS 386 (456) Q Consensus 310 ~~~~~~~~~i~~~t--~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~-~~~~l~~~~~g~~~~~~i~v~ 386 (456) ..++.+-++|+... ++ ...-++.+++..|+ ....-....++.-.+.+...+. +++..++.+..... ..-.+. T Consensus 268 ~li~~~d~~Isk~iLGqt-lts~~~~Gs~a~~~---vh~~v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~-~~p~~~ 342 (488) T protein:vir:99 268 TLHDTMDATIAKVGLGQV-ASTQGTPGRLGNDD---LQADVRLDLVKADADLICESFNLGPARWLTEWNFPGA-QPPRVY 342 (488) T ss_pred HHHHHHHHHHHHHHhhhh-hcccccccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCc-CCceeE Confidence 77888778887643 22 11111111222222 2222333444445566667774 47777776664322 223567 Q ss_pred ecCCCCCCHHHHHHHHHHHHhc-CC-CcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 387 FESPDRVTLGEKYSAASLAKAA-GE-SWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 387 f~~~~~~~~~e~ad~~~kl~~~-g~-~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) |....+.+..+.++.+.+|... |+ ++.+.+.+.+|+.+.+..+... ..........+++ T Consensus 343 ~~~~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~Gip~~~~~~~~~-----------~~~~~~~~~~~~~ 403 (488) T protein:vir:99 343 RVIEEPEDITAKAERDEKVFRMSGFRPTRGYVQETYGVEVESTQAEAT-----------APTPSTEFAEGDQ 403 (488) T ss_pred ecCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHcCCCCcccccccc-----------cCCCcccCCCCCC Confidence 8788889999999999999885 76 7888888899987532211100 0001111111222 No 203 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=98.40 E-value=8.5e-07 Score=53.87 Aligned_cols=390 Identities=10% Similarity=0.005 Sum_probs=175.1 Q ss_pred CC------CCCHHH---HHHHHHHHHHHHHHHHHHHHHHhhc----cCcccc-cCcccchhhhhhhhhhcCChHHHHHHH Q lcl|Aclame:pro 1 MT------ASTPAE---WLPVLTKRIDDGMSRVRLLARYSNG----DAPLPE-LTRNTSAAWRSFQREARTNWGLMVRDS 66 (456) Q Consensus 1 ~~------~~t~~~---~~~~l~~~~~~~~~~~~~~~~YY~g----~~~i~~-~~~~~~~~~~~~~~k~~~n~~~~iVd~ 66 (456) || +-.|-. .-+.+..+.......++.. .+.| .-.++. .+. ...-+.+. .......-+++. T Consensus 1 ~~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~--~~~~~~p~~~~il~~~~~-~~~~y~~m---~~D~~i~s~l~~ 74 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFF--ALGMYLPNPDPVLKALGK-DIRVYREL---RADAHVGGCVRR 74 (491) T ss_pred CCCeeeCCCCCcccccccchhHHHHHhhhccccccc--cccccCcchhHHHhhccC-CHHHHHHH---hhChHHHHHHHH Confidence 43 122211 1112222222211111100 0111 100100 000 00111111 234567778888 Q ss_pred HHHhhhcCCcccCCCc-cccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeE-EEEEeCCCCceE---EEEEccceEEEE Q lcl|Aclame:pro 67 VADRIIPNGITVGGSA-DSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESY-LTCWRRDDGTAT---ITADSPETMVVS 141 (456) Q Consensus 67 ~~~~l~g~~~~~~~~~-d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~-~~v~~~~~g~~~---i~~~~p~~~~~i 141 (456) ...-+.+.++++..+. +....+.+.+.+++-+|+....++. ++.-||.+. +++|...+|... +..++|+.+. T Consensus 75 Rk~av~~~~w~i~~~~~~~~~a~~i~e~l~~~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~-- 151 (491) T protein:vir:79 75 RKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIATEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFV-- 151 (491) T ss_pred HHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeeEEeeeeeccccee-- Confidence 8888888998875433 3334567778887777888877774 688899875 567876666543 4444444322 Q ss_pred eeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEE---e Q lcl|Aclame:pro 142 VDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVV---Y 218 (456) Q Consensus 142 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~---~ 218 (456) ||+..+ +++ ...++...-..+. ..+.+...+ . T Consensus 152 ~d~~~~------l~l-~~~~~~~~g~~lp--------------------------------------~~k~i~~~~~~~~ 186 (491) T protein:vir:79 152 YDPENQ------LRF-RSKEHWVQGEELP--------------------------------------ARKFLVPRQEATY 186 (491) T ss_pred eccCCc------eEE-eecCCCCCceeec--------------------------------------CCCeEEEEecCCC Confidence 332211 011 1000000000000 011111111 1 Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCccee Q lcl|Aclame:pro 219 QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIW 298 (456) Q Consensus 219 ~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (456) .|+.|.|.+..+....--=+..+.+.+...+.|+.|.++.+=... ..+++.+.+.. .......+....++.+.++. T Consensus 187 g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~~~---a~~~ek~~l~~-al~~~~~~a~~viP~~~~ie 262 (491) T protein:vir:79 187 LNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRS---ASDAETNLLLD-RLEDMVQDAVAVIPDDSSIE 262 (491) T ss_pred CCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCC---CCHHHHHHHHH-HHHHHhcCeEEEecCCceeE Confidence 366788888776443322233477777888889999777652111 01222222211 12233344455666666554 Q ss_pred eccc----cchHHHHHHHHHHHHHHHhhc--CCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 299 ESQA----NDFTPMLSAIKEHIRQLSSAT--KTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKAL 372 (456) Q Consensus 299 ~~~~----~~~~~~~~~~~~~~~~i~~~t--~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~ 372 (456) .... .+...|...++.+-++|+... ++ ... ++.+++..|. ....-....++.-.+.....+.++++-++ T Consensus 263 ~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqt-lTt-~~~gs~a~~~---vh~~v~~~i~~~D~~~i~~tln~li~~l~ 337 (491) T protein:vir:79 263 IKEAAGKSGSADVYERLLHFCRGEVSIALLGQN-QTT-EATSTRASAQ---AGLEVTDDIRDGDKAIVVEAMNMLIRWIC 337 (491) T ss_pred EEeccCCCCChhHHHHHHHHHHHHHHHHHhhhh-hcc-CcccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3322 234457777777777777643 12 111 1112222222 22222333344445666677777777777 Q ss_pred HhcCCCccccceEEecCCCCCCH-HHHHHHHHHHHhcCC-CcHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhhcccccc Q lcl|Aclame:pro 373 QIEGESVEDTVDVSFESPDRVTL-GEKYSAASLAKAAGE-SWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRP 450 (456) Q Consensus 373 ~~~g~~~~~~i~v~f~~~~~~~~-~e~ad~~~kl~~~g~-~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~ 450 (456) .+.+... ......|..+ .+. ...++.+.+|++.|+ ++.+.+.+.+|+.+.+..+.............+....... T Consensus 338 ~~N~~~~-~~p~f~~~e~--ee~~~~~a~~~~~L~~~G~~i~~~~~~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~~~~ 414 (491) T protein:vir:79 338 DLNFDGA-ARPVFDMWEQ--EQVDEIQAGRDEKLTRAGARFTPAYFKRAYNLQDGDLDERPLPVSAVDAVGAASFAEFEA 414 (491) T ss_pred HhcCCCC-CcceEeecCc--CchhHHHHHHHHHHHhCCCccCHHHHHHHhCCCCCCCCccccCcCcccccccccccccCC Confidence 7766422 2233444433 333 457888999999997 7888888888876432111100000000000000000000 Q ss_pred cCCCCC Q lcl|Aclame:pro 451 QEDGSR 456 (456) Q Consensus 451 ~~~Gs~ 456 (456) ....+. T Consensus 415 ~~~~~~ 420 (491) T protein:vir:79 415 PDQDAL 420 (491) T ss_pred CCCcch Confidence 000000 No 204 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=98.37 E-value=9.8e-07 Score=53.52 Aligned_cols=367 Identities=13% Similarity=0.037 Sum_probs=151.9 Q ss_pred HHHhhccCccccc---C--------cccchhh-hhhhhhhcCChHHHHHHHHHHhhhcCCcccCC-CccccH-HHHHHHH Q lcl|Aclame:pro 28 ARYSNGDAPLPEL---T--------RNTSAAW-RSFQREARTNWGLMVRDSVADRIIPNGITVGG-SADSDL-ALRARRI 93 (456) Q Consensus 28 ~~YY~g~~~i~~~---~--------~~~~~~~-~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~-~~d~~~-~~~l~~~ 93 (456) -.+|++....... . ......+ .... +.+.=.--+|+..++-+..-|+.+.. ..+... ...+..+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~A--l~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~l 78 (417) T protein:vir:38 1 MKLFRGLATEVDPHWADHLLDSGVIPSFRGGYLGISA--LRNSDVLTAVSIVSGDVSRFPLVITDSSTDEVIDLANIEYL 78 (417) T ss_pred CccccccccCCCccchhhhcccccccccCCceechhh--cccHHHHHHHHHHHHhhccCeeEEEEcCCcceeccchHHHH Confidence 1111221110000 0 0000000 0000 01111224677777777666776521 111111 1123344 Q ss_pred HHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCCC-Cce-EEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeE Q lcl|Aclame:pro 94 WRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRDD-GTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDF 166 (456) Q Consensus 94 ~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~~-g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~ 166 (456) +.. |. ...+...++..++.+|.||+.+-.+.. |.+ .+.+++|..+.+..++.. .+. ..+...++.. T Consensus 79 L~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~--~~~---y~~~~~~~~~-- 151 (417) T protein:vir:38 79 MNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPD--NII---YRFTPYNSSM-- 151 (417) T ss_pred HhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCC--eEE---EEEEEcCCcE-- Confidence 432 32 234566778889999999999988765 444 367788888877654321 111 1111111111 Q ss_pred EEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 167 AIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLS 246 (456) Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~ 246 (456) ...+..+.+.|+... + .+.-.|.|.++.+...+.....+ ... T Consensus 152 ~~~~~~~dviH~r~~--------------------------------~---~d~~~G~s~l~~~~~~i~~~~~~---~~~ 193 (417) T protein:vir:38 152 QKVCGFEDVIHWKFF--------------------------------S---YDTIMGRSPLLSLGDEIGLQESG---VST 193 (417) T ss_pred EEEecCcceEEecCC--------------------------------C---CCCccccCHHHHHHHHHHHHHHH---HHH Confidence 122233333333100 0 00012566554443333322211 111 Q ss_pred HHHHHhh---hHHhhcCCCccccccccchhhhhhh--hhhh-hhccceeecCCCcceeeccccch-HHHHHHHHHHHHHH Q lcl|Aclame:pro 247 TMAIQAF---RQRALKSTEHGLPNVDENGNAIDYA--SIFE-AAPGALWELPPGVDIWESQANDF-TPMLSAIKEHIRQL 319 (456) Q Consensus 247 ~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i 319 (456) ...+|.+ |-.++.-.. ...++.-..+... .... ...|+...++.+.++..+..... ..|++..+....+| T Consensus 194 ~~~~f~ng~~p~~il~~~~---~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~I 270 (417) T protein:vir:38 194 LQKFFKSGLKGSIIKAKES---RLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQI 270 (417) T ss_pred HHHHHhccCCCcEEEEeCC---CCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHH Confidence 2233332 322222110 0111111111110 0011 12355667788888876543222 24778788888999 Q ss_pred HhhcCCChhhhccccccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHH Q lcl|Aclame:pro 320 SSATKTPLPMLMPDSANQSAEGAH--NIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGE 397 (456) Q Consensus 320 ~~~t~~p~~~~~~~~~n~Sg~Al~--~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e 397 (456) +.+-++|++.++..+.+.|.+.+. +....|.-.+...+..+... +..........+.|.... ...+. T Consensus 271 a~~fgVPp~~lg~~~~~s~~e~~~~~~~~~tl~P~~~~ie~~l~~~----------Ll~~~~~~~~~~~fd~~~-l~~~~ 339 (417) T protein:vir:38 271 AKALRVPAYRLAQNSPNQSVKQLADDYIRNDLPFYFEPITSEFELK----------LLDDAQRHQYCIGFDTKS-VNGLP 339 (417) T ss_pred HHHhCCCHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hcChhhcccceEEechhh-hhHHH Confidence 999999999997543333333222 22222222222222222111 111111123446664221 22232 Q ss_pred HHHHHHHHHhcCCCcHHHHHHhCCCCccHH---HHH---------H---HHHHHHHHHHHhhccccccc----CCCCC Q lcl|Aclame:pro 398 KYSAASLAKAAGESWASIRRNILNYNADQI---KQD---------D---LDRAREQITLFAGNPVQRPQ----EDGSR 456 (456) Q Consensus 398 ~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~---~~~---------e---~~~~~e~~~~~~~~~~~~~~----~~Gs~ 456 (456) .+ .+.+++.+|+++.-.+++++|+.|-+. ++. + +....+....-++....+.+ +.|++ T Consensus 340 ~~-~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~~~~~~~kgg~~~~~~~~~~~~~~~~ 416 (417) T protein:vir:38 340 IA-DVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAEHAAELKGGDTNAKGNQNGSGTNAN 416 (417) T ss_pred HH-HHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccccccccccccccccccccCCCCCCCCCCCcCCCCcCC Confidence 33 356678899999999999999865211 110 1 11001111111111111111 12222 No 205 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=98.35 E-value=1.1e-06 Score=53.21 Aligned_cols=432 Identities=12% Similarity=-0.009 Sum_probs=167.9 Q ss_pred CCCCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTK-----------RIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVAD 69 (456) Q Consensus 1 ~~~~t~~~~~~~l~~-----------~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~ 69 (456) ||+-+-. +-...++ +-...++- .-.++|.++.-|. |.-.+..++... =.+++++.+|+.++. T Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--p~~~~~~L~~~~--e~~~~~~~~i~~~~~ 73 (651) T protein:vir:99 1 MTDTTGE-TQETKVHVEGLGGEADLAKSPNSTQI--PDHRIQSHNVGVN--PPYNPDRLAAFL--ELNETLATGIRKKSR 73 (651) T ss_pred CCCccce-eeeeEEEeeccccccccccccccccc--chhhhcccCCCCC--CCCCHHHHHHHH--hcChHHHHHHHHHhh Confidence 6654411 0000000 00000110 1234455543222 444555555542 125699999999999 Q ss_pred hhhcCCcccCC-------CccccHHHHHHHHHHh---------------cChhHHHHHHHHHHhhCCeeEEEEEeCCCCc Q lcl|Aclame:pro 70 RIIPNGITVGG-------SADSDLALRARRIWRD---------------NRMDSVCKQWVKYGLDFGESYLTCWRRDDGT 127 (456) Q Consensus 70 ~l~g~~~~~~~-------~~d~~~~~~l~~~~~~---------------n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~ 127 (456) ++.|-|+.+.. +.+.+....++..|.. ..+......+..+...+|.+|+-+..+..|. T Consensus 74 ~iag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g~ 153 (651) T protein:vir:99 74 YEVGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEGR 153 (651) T ss_pred hhhccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCccc Confidence 99999976421 1122223344555433 1233455566677788898888777766665 Q ss_pred e-EEEEEccceEEEEeeCCC-CceeEEE---------------------------EEEEEecCCceeEEEEEeCCeEEEE Q lcl|Aclame:pro 128 A-TITADSPETMVVSVDPLQ-PWRIRAA---------------------------MRWWRDLDAESDFAIVWSGDGWQKF 178 (456) Q Consensus 128 ~-~i~~~~p~~~~~i~d~~~-~~~~~~~---------------------------i~~~~~~~~~~~~~~~~~~~~~~~~ 178 (456) + .+..+++..+-..-+... ....... +..+....+............+... T Consensus 154 pv~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~ 233 (651) T protein:vir:99 154 PVGLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIR 233 (651) T ss_pred hhhhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeEE Confidence 4 233344433222111100 0000000 0000000000000000000000000 Q ss_pred EEcccccccccceeeccCCCcccccccccccCcee--EEEEecC------CCCCchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 179 ARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPP--PVVVYQN------PDGMGEVEPHIDIINRINRAELQLLSTMAI 250 (456) Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--pv~~~~n------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~ 250 (456) ...... ............+.+...... ....++ -|+|+.+ ..|.|.+..... .+....+-......+ T Consensus 234 ~~~d~~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~---~i~~a~~a~~~~~~~ 308 (651) T protein:vir:99 234 YREDEE-SEREPIFVDRETGDVTTGDAN-GLENRPANELIFIPNPSILEDDYGVPDWVSAIR---TISADEAAKDYNRDF 308 (651) T ss_pred eccCcc-eeeeeecccceeeeEEEcCCC-ceeEecccceEEecCCCCCCCcccccHHHHHHH---HHHHHHHHHHHHHHH Confidence 000000 000000000000000000000 000011 1344431 135565554443 333222222222334 Q ss_pred Hhh---hHHhhc--CCCccccccccchhhhhh-hhhhhhhccceeecC-----------CCcceeeccccc--hHHHHHH Q lcl|Aclame:pro 251 QAF---RQRALK--STEHGLPNVDENGNAIDY-ASIFEAAPGALWELP-----------PGVDIWESQAND--FTPMLSA 311 (456) Q Consensus 251 ~~~---~~~~i~--G~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~~ 311 (456) |.+ |..++. |... .++.-+.+.. ........++.+.++ .+.++..+.... ...|++. T Consensus 309 f~NG~~p~gil~~~~~~l----s~e~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~ 384 (651) T protein:vir:99 309 FDNDTIPRMVIKVTGGEL----SEESKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQF 384 (651) T ss_pred HhccCCCceEEEecCCCC----CHHHHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHH Confidence 443 333332 2111 1111112111 111112333443332 355665554322 2357888 Q ss_pred HHHHHHHHHhhcCCChhhhcccc-ccc-hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEe Q lcl|Aclame:pro 312 IKEHIRQLSSATKTPLPMLMPDS-ANQ-SAEG--AHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSF 387 (456) Q Consensus 312 ~~~~~~~i~~~t~~p~~~~~~~~-~n~-Sg~A--l~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f 387 (456) .+....+|++.-++|+..+|... +|- +.+. +.+....|.- +.+.+...|.+.+ +.-........+.+.| T Consensus 385 r~~~~~eIa~afgVPp~~lG~~~~~~~sn~E~~~~~f~~~tL~P----~~~~ie~eln~kL---l~~~e~~~~~~i~~ef 457 (651) T protein:vir:99 385 REKNEHEIAKVLEVPPVKIGVTDSANRSNSDQQDKDFALEVIQP----EQHTFAEWLYQII---HQQALGVTDWTIEYEL 457 (651) T ss_pred HHHHHHHHHHHhCCCHHHhccCCCCCcccHHHHHHHHHHHHHHH----HHHHHHHHHHHhh---cCccccccCceEEEEe Confidence 88888999999999999887432 221 2221 1122222221 1122222221111 1000111233455666 Q ss_pred cC--CCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccH--HHHHHHH-----HHHHHHHHHhhccc----ccccCCC Q lcl|Aclame:pro 388 ES--PDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQ--IKQDDLD-----RAREQITLFAGNPV----QRPQEDG 454 (456) Q Consensus 388 ~~--~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~--~~~~e~~-----~~~e~~~~~~~~~~----~~~~~~G 454 (456) .. ..-.+....++++.+++++|+++...+++.+|+.+-. ...+-.. ...+... -++... +...+.| T Consensus 458 ~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~-gge~~~~~~~~~~~~~~ 536 (651) T protein:vir:99 458 RGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAG-GGETEAVHEPPEENKIG 536 (651) T ss_pred ccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcccccccccccccccccccc-CCCCcccccCccccccc Confidence 54 3446778889999999999999999999999986531 1111000 0000000 000000 0001111 Q ss_pred CC Q lcl|Aclame:pro 455 SR 456 (456) Q Consensus 455 s~ 456 (456) -+ T Consensus 537 ~~ 538 (651) T protein:vir:99 537 ER 538 (651) T ss_pred cc Confidence 11 No 206 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=98.35 E-value=1.2e-06 Score=53.11 Aligned_cols=375 Identities=11% Similarity=-0.011 Sum_probs=175.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) -..+||..+..-|...-.-...++..| ||+-. -......-++.+....+.+.++++.. T Consensus 37 ~~gltp~~l~~iL~~a~~gd~~~~~~L--~~dm~--------------------~~D~hi~s~l~~Rk~av~~~~w~I~p 94 (512) T protein:vir:19 37 SSGVTPNRAAQMLRDAERGDLTAQADL--AFDME--------------------EKDTHLFSELSKRRLAIQALEWRIAP 94 (512) T ss_pred ccCCCHHHHHHHHHHhhCCCHHHHHHH--HHHHH--------------------hhChHHHHHHHHHHHHHhCCCceEec Confidence 235666665444433322222333222 22110 01234455566666667777877743 Q ss_pred Ccc-----ccHHHHHHHHHHhc-ChhHHHHHHHHHHhhCCeeE-EEEEeCCCCceE---EEEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 81 SAD-----SDLALRARRIWRDN-RMDSVCKQWVKYGLDFGESY-LTCWRRDDGTAT---ITADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 81 ~~d-----~~~~~~l~~~~~~n-~~~~~~~~~~~~~~~~G~a~-~~v~~~~~g~~~---i~~~~p~~~~~i~d~~~~~~~ 150 (456) ..+ .+..+.+.+.+..- +|+..+..+. ++.-||.+. +++|.-.+|... +...+|+.+ .|++.+..++ T Consensus 95 ~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~ll-dA~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~~f--~~~~~~~~~l 171 (512) T protein:vir:19 95 ARDASAQEKKDADMLNEYLHDAAWFEDALFDAG-DAILKGYSMQEIEWGWLGKMRVPVALHHRDPALF--CANPDNLNEL 171 (512) T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-hhhhhcceeeeeEeeeeCCceeeeeeeeeccccc--eeccCCCcEE Confidence 322 12334456666543 5777777665 688899874 567765555543 344444322 2232222111 Q ss_pred EEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEE---ecCCCCCchH Q lcl|Aclame:pro 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVV---YQNPDGMGEV 227 (456) Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~---~~n~~~~s~~ 227 (456) ++ +....++ ..+. ..+.+...+ ..|+.|.|.+ T Consensus 172 ----r~-~~~~~~G--~~l~--------------------------------------~~k~i~~~~~~~~g~p~g~gLl 206 (512) T protein:vir:19 172 ----RL-RDASYHG--LELQ--------------------------------------PFGWFMHRAKSRTGYVGTNGLV 206 (512) T ss_pred ----Ee-cCCCCCc--eeec--------------------------------------CCceEEEeccCCCCCcccccHH Confidence 11 1000000 0000 011111111 1366788888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCccee--eccccch Q lcl|Aclame:pro 228 EPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIW--ESQANDF 305 (456) Q Consensus 228 ~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 305 (456) ..+.-..--=+..+.+.+..++.|+.|.++.+=.... .+++...+. ........+....++.+.++. +...... T Consensus 207 r~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a---~~~ek~~L~-~al~~~~~~a~~iiP~~~~ie~~ea~~~~~ 282 (512) T protein:vir:19 207 RTLIWPFIFKNYSVRDFAEFLEIYGLPMRVGKYPTGS---TNREKATLM-QAVMDIGRRAGGIIPMGMTLDFQSAADGQS 282 (512) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEecCCCC---CHHHHHHHH-HHHHHHhhCcEEEecCCceEEEeecCCCCH Confidence 7754433333445777888889999997765411110 111111111 111223444455666665543 3222344 Q ss_pred HHHHHHHHHHHHHHHhhc-CCChhh-hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcc-- Q lcl|Aclame:pro 306 TPMLSAIKEHIRQLSSAT-KTPLPM-LMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLE-AILVKALQIEGESVE-- 380 (456) Q Consensus 306 ~~~~~~~~~~~~~i~~~t-~~p~~~-~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~-~~~~l~~~~~g~~~~-- 380 (456) ..|...++.+-++|++.. |=.... .|..+++. .-.....-....++.-.+.+...+. ++++-++.+...... T Consensus 283 ~~y~~li~~~d~~Isk~iLGqtlTs~~g~~Gs~a---~~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~ 359 (512) T protein:vir:19 283 DPFMAMIGWAEKAISKAILGGTLTTEAGDKGARS---LGEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDI 359 (512) T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccccchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc Confidence 568888888888888643 210110 01111111 1122223333344445566667774 477777777654322 Q ss_pred -ccceEEecCCCCCCHHHHHHHHHHHHhcCC-CcHHHHHHhCCCCccHHHH-HHH-HHHHHHHHHHhhcccccccCCC-- Q lcl|Aclame:pro 381 -DTVDVSFESPDRVTLGEKYSAASLAKAAGE-SWASIRRNILNYNADQIKQ-DDL-DRAREQITLFAGNPVQRPQEDG-- 454 (456) Q Consensus 381 -~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~-~s~~t~~~~~~~~~~~~~~-~e~-~~~~e~~~~~~~~~~~~~~~~G-- 454 (456) .--.+.|....+.+....++.+.+|. .|+ ++.+.+.+.+|+..-+..+ ... ........ .........++ T Consensus 360 ~~~p~~~f~~~e~eDl~~~a~~~~~l~-~G~~i~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~ 435 (512) T protein:vir:19 360 NRLPGIVFDTSEAGDITALSDAIPKLA-AGMRIPVSWIQEKLHIPQPVGDEAVFTIQPVVPDNG---SQKEAALSAEDIP 435 (512) T ss_pred cccceEEecCCChhhHHHHHHHHHHHh-cCCCCCHHHHHHHhCCCCCCCccccccCCCcccccc---ccccccccccCCC Confidence 22467888888999999999998886 675 7888888889874321111 000 00000000 00000000000 Q ss_pred ---------------------------------CC Q lcl|Aclame:pro 455 ---------------------------------SR 456 (456) Q Consensus 455 ---------------------------------s~ 456 (456) |- T Consensus 436 ~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~~~~s~ 470 (512) T protein:vir:19 436 QEDDIDRMGVSPEDWQRSVDPLLKPVIFSVLKDGP 470 (512) T ss_pred chhhHhHHhhhHHHHHHHHHHHHHHHHHHHHhCCH Confidence 00 No 207 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=98.30 E-value=1.6e-06 Score=52.41 Aligned_cols=425 Identities=10% Similarity=0.046 Sum_probs=186.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHh---hccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGM----SRVRLLARYS---NGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~----~~~~~~~~YY---~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) |..-+.+.+.+++ +.+...+ .+++.+.+|. .+.- .+... ......+.++..+-+...++++++.|.+ T Consensus 1 m~~~~~~~l~~r~-~~l~~~R~~~e~~w~e~~~~~lP~~~~~----~~~~~-~~~~~~~~~~~dst~~~a~~~Las~l~~ 74 (556) T protein:vir:73 1 MAETEKERLLKQL-AQLKNERTSFESHWLDLSDFINPRGSRF----LTSDV-NRDDRRNTKIVDPTGSMAQRILSSGMMS 74 (556) T ss_pred CChhhHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhccccCCc----CCCCC-CcchhhcCccccchHHHHHHHHHHHHHH Confidence 8775555555444 4443333 3344445552 2111 00000 0111223345566777778888877764 Q ss_pred C------C-cccCC--Ccccc---H-------HHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 74 N------G-ITVGG--SADSD---L-------ALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADS 134 (456) Q Consensus 74 ~------~-~~~~~--~~d~~---~-------~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~ 134 (456) - + |++.. .+..+ . ...+.+.+..++|.....++.++...+|.|-+++-.+..+-++++.++ T Consensus 75 ~ltpp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~r~~~~~ 154 (556) T protein:vir:73 75 GITSPARPWFKLATPDPDMMDYGPVKIWLEVVQRRMNEVFNKSNLYQSLPVMYASLGTFGTGAMAVMEDDQDVIRTMPFP 154 (556) T ss_pred hhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeeecCCceEEEEEee Confidence 3 2 23322 11111 1 112344566678889999999999999999988877767777888998 Q ss_pred cceEEEEeeCCCCceeEEEEEEEEec-------CC---------------c-eeEEEEEeCCeEEEEEEccccccccc-- Q lcl|Aclame:pro 135 PETMVVSVDPLQPWRIRAAMRWWRDL-------DA---------------E-SDFAIVWSGDGWQKFARPCFVQSSSR-- 189 (456) Q Consensus 135 p~~~~~i~d~~~~~~~~~~i~~~~~~-------~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 189 (456) ..++++--|+ .+ .+..++|.++-. .+ . ...+++ ++.+.......... T Consensus 155 l~~~~~~~d~-~G-~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~~v------~~~V~pr~~~~~~~~~ 226 (556) T protein:vir:73 155 IGSYYLANSP-RG-SVDTCIRQFSMTVRQMVQEFGLDNVSTSVKGMWENGTYETWVEV------NHCITPNVNRDSGKMD 226 (556) T ss_pred cceeEEeeCC-CC-CeEEEEEEEeccHHHHHHHcCcccCCHHHHHHHhcCCccceEEE------EEEEeccccccccccC Confidence 8888887764 33 445555543311 00 0 111222 11111100000000 Q ss_pred --c-----eeeccCCCcccccccccccCceeEEEEe------cCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 190 --R-----RLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGE-VEPHIDIINRINRAELQLLSTMAIQAFRQ 255 (456) Q Consensus 190 --~-----~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~-~~~v~~liD~~~~~~s~~~~~~~~~~~~~ 255 (456) . ..+....+..... . +..+.-+|++.+ .+..|.|- .+..++-+..+|...-..+..++....|. T Consensus 227 ~~~~p~~s~~~~~~~~~~~vl-~-esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~~lgD~k~L~~l~~~~l~~~~~~~~pp 304 (556) T protein:vir:73 227 SKNKPYRSVYFESGGDSDKLL-R-ESGFDEFPILAPRWEVNGEDVYASSCPGMLALGQVKALQVEQKRKAQLIDKATNPP 304 (556) T ss_pred cccceEEEEEEEecCCCceec-c-cCCcccCCceeeeeeecCCcccccCccHHHhHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 0 0011000100000 0 111222333222 24568884 88899999999988888888888888875 Q ss_pred HhhcCCCccccccccchhhhhhhhhhhhhccceeecC--C---CcceeeccccchHHHHHHHHHHHHHHHhhcCCCh-hh Q lcl|Aclame:pro 256 RALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELP--P---GVDIWESQANDFTPMLSAIKEHIRQLSSATKTPL-PM 329 (456) Q Consensus 256 ~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~-~~ 329 (456) +.+...... ..+...+|.+.... . +.+..+...++.....+.+..+...|...--... .. T Consensus 305 ~~v~~~~~~--------------~~~~~~pgg~~~~~~~~~~~~i~p~~~~~~d~~~~~~~i~~~~~rI~~af~~d~~~~ 370 (556) T protein:vir:73 305 MVAPTSLKN--------------QRVSLLPGDVTYLDVISGQDGFKPAYLVNPNTADLLADIQDTRQTINSAYFVDLFMM 370 (556) T ss_pred eeccccccc--------------cceeeccCccccccCCCCccceeeeccccccHHHHHHHHHHHHHHHHHHhhcchhhh Confidence 544321100 11222333332111 1 1111122223344333334444444433222111 11 Q ss_pred hc-cccccchHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhcCCC------ccccceEEecCCCCCCH-H Q lcl|Aclame:pro 330 LM-PDSANQSAEGAHNIEKGFLFKC----EDRL-SIAKIGLEAILVKALQIEGES------VEDTVDVSFESPDRVTL-G 396 (456) Q Consensus 330 ~~-~~~~n~Sg~Al~~~~~~l~~k~----~~~~-~~f~~~l~~~~~l~~~~~g~~------~~~~i~v~f~~~~~~~~-~ 396 (456) ++ .+..+.++.-++.....+.... .+.+ ..+.+-+.+++.++.+..-.+ ....++|.+..++...- . T Consensus 371 l~~~~~~r~TAtEv~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aqk~ 450 (556) T protein:vir:73 371 LQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDEALNPLIDRVFSIMARKNMLPEPPDVLQGMPLRIEYISVMAQAQKS 450 (556) T ss_pred hccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeecHHHHHHHH Confidence 11 2334457766665555444442 2222 234444566666655422111 12357777766653221 1 Q ss_pred -------HHHHHHHHHHhcC-----CCcHHH----HHHhCCCC------ccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 397 -------EKYSAASLAKAAG-----ESWASI----RRNILNYN------ADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 397 -------e~ad~~~kl~~~g-----~~s~~t----~~~~~~~~------~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ..++.+..+.+.+ .+.-.. ....+|.. +++++++.++|.+.+..+.+....+ ...+| T Consensus 451 ~~~~~i~~~~~~~~~laq~~Pe~~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~rq~r~~~qq~~~~~~~~~-~a~~~ 529 (556) T protein:vir:73 451 IGLTSLSQTVGFIGQLAQFKPEALDKLDVDQAIDAFSEMSGVSPTVIVPQEQVQGIREERAKQAQAAQAMAMGQ-AAAQG 529 (556) T ss_pred HHHHHHHHHHHHHHHHhccChhhHhcCCHHHHHHHHHHHcCCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH Confidence 1122222222211 011111 22345653 2344554444433322221111111 11222 Q ss_pred CC Q lcl|Aclame:pro 455 SR 456 (456) Q Consensus 455 s~ 456 (456) +| T Consensus 530 ~~ 531 (556) T protein:vir:73 530 AK 531 (556) T ss_pred HH Confidence 22 No 208 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=98.23 E-value=2.2e-06 Score=51.56 Aligned_cols=368 Identities=11% Similarity=0.021 Sum_probs=152.0 Q ss_pred CC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MT--------ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~--------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |+ ..++.+++ ..+.-|...-...... . +.+.-.-.+|+..++-+. T Consensus 1 m~~f~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~---A-------l~~~~V~~~i~~Ia~~iA 53 (406) T protein:vir:97 1 MSFFQPLGTSKVSYDDYI-----------------SSVLAGDVSQKYLGVS---A-------LKNSDILTATSIIAGDIA 53 (406) T ss_pred CccccccCCCCCCcchHH-----------------HHHhcCCCCcccccch---h-------hccHHHHHHHHHHHHhhh Confidence 21 11111111 1111111110000000 0 011112235666655555 Q ss_pred cCCcccCCC-ccccHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCC-CCce-EEEEEccceEEEEeeC Q lcl|Aclame:pro 73 PNGITVGGS-ADSDLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRD-DGTA-TITADSPETMVVSVDP 144 (456) Q Consensus 73 g~~~~~~~~-~d~~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~-~g~~-~i~~~~p~~~~~i~d~ 144 (456) .-|+.+... .+......+..++.. |. -..+...++..++.+|.||+++-.+. .|.+ .+.+++|..+.+..++ T Consensus 54 ~lp~~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~ 133 (406) T protein:vir:97 54 RFPLVKKDVNGDIIHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETD 133 (406) T ss_pred hCeeEEEecCccccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcC Confidence 556654211 111111224455532 32 23566778888999999999988864 5655 6888899998877654 Q ss_pred CCCceeEEEEEE-EEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCC Q lcl|Aclame:pro 145 LQPWRIRAAMRW-WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDG 223 (456) Q Consensus 145 ~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~ 223 (456) .. .+ .| +....+... ..+.++.+.|+... ....-.| T Consensus 134 ~~--~~----~y~~~~~~~~~~--~~~~~~evih~r~~-----------------------------------~~dg~~G 170 (406) T protein:vir:97 134 NH--EI----VYTFTDMLTAKQ--VKCFAHDVIHWKFF-----------------------------------SHDTILG 170 (406) T ss_pred Cc--eE----EEEEEecCCceE--EEEccccEEEecCC-----------------------------------CCCCccc Confidence 32 11 11 111111111 12333333333100 0000125 Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHhhcCCCccccccccchhhhhh-hh-hhh-hhccceeecCCCccee Q lcl|Aclame:pro 224 MGEVEPHIDIINRINRAELQLLSTMAIQAFR--QRALKSTEHGLPNVDENGNAIDY-AS-IFE-AAPGALWELPPGVDIW 298 (456) Q Consensus 224 ~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~--~~~i~G~~~~~~~~d~~g~~~~~-~~-~~~-~~~~~~~~~~~~~~~~ 298 (456) .|.++.....++....+. .....+|.+. -.++.... ....++.-..+.. .. ... ...++...++.+.++. T Consensus 171 ~spi~~~~~~i~~~~a~~---~~~~~~f~ng~~~~~i~~~~--~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~ 245 (406) T protein:vir:97 171 RSPLLSLGDEIDLQTGGI---NTLIKFFKDGFSSGILTMKG--AQLSGDARQRARQEFEKMREGSVGGSPLVFDSTMEYT 245 (406) T ss_pred ccHHHHHHHHHHHHHHHH---HHHHHHHhccCCCceEEecC--CCCCHHHHHHHHHHHHHHhcccccCceeecCCCceEE Confidence 665544433333222111 1112222221 11111111 0011111111111 11 111 1234566778888887 Q ss_pred eccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccchHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 299 ESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAE-G-AHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE 375 (456) Q Consensus 299 ~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~-A-l~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~ 375 (456) ++.... ...|++..+....+|+.+-++|+..+|..+.+.+-+ . ..+....|.-.+.. |++.+.. .+. T Consensus 246 ~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~~~~e~~~~~f~~~~l~P~~~~--------ie~~l~~--kll 315 (406) T protein:vir:97 246 PLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNSPNQSVAQLMEDYVTNDLPFYFDA--------ITSELGL--KTL 315 (406) T ss_pred EccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCCCcchHHHHHHHHHHHHHHHHHHH--------HHHHHhh--hhc Confidence 765322 234677777778999999999999998543332211 1 11111112221111 2221111 111 Q ss_pred CCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH---HHH-------HHHHHHHHHHHHhhc Q lcl|Aclame:pro 376 GESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI---KQD-------DLDRAREQITLFAGN 445 (456) Q Consensus 376 g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~---~~~-------e~~~~~e~~~~~~~~ 445 (456) .........+.|.- ..+....++++.++++.|+++...+++.+|+.+.+. ++. ..+...+..+.... T Consensus 316 ~~~~~~~~~i~fd~--~~~~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~~~~~~~~~~~~~- 392 (406) T protein:vir:97 316 NDKDRRLYHIEFDT--RSVTGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQSSLNYVFLDKKEEYQDKVGI- 392 (406) T ss_pred ChhhccceeEEEec--CccchhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEeeccCccchhccccccccccc- Confidence 11111223344531 123445567788889999999999999998875321 110 11111110000000 Q ss_pred ccccccCCCCC Q lcl|Aclame:pro 446 PVQRPQEDGSR 456 (456) Q Consensus 446 ~~~~~~~~Gs~ 456 (456) ..+.+..+|.+ T Consensus 393 ~~~gg~~~~~~ 403 (406) T protein:vir:97 393 KGKGGEVNAEE 403 (406) T ss_pred ccCCCCCCCCC Confidence 11111111111 No 209 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=98.17 E-value=3.2e-06 Score=50.75 Aligned_cols=370 Identities=11% Similarity=-0.004 Sum_probs=156.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-cccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPL-PELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVG 79 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i-~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~ 79 (456) || -.--|.... .+.+.......... -..+.....+|+.+++-+-+-|+.+. T Consensus 1 ~~--------------------------~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~V~acV~~Ia~~iA~lpl~l~ 52 (723) T protein:vir:94 1 MT--------------------------TFPSGAGGWNAWSADSVFGNGAKG--WSNSAVAYRCISMLANNAASVDLVVR 52 (723) T ss_pred Cc--------------------------ccccCCCccccccccccccccHHH--HhhhHHHHHHHHHHHHhhccceeEEE Confidence 11 000000000 00000000000000 12233456677888877777787753 Q ss_pred CC-ccccHHHHHHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEeCC---CCce-EEEEEccceEEEEeeCCCCce Q lcl|Aclame:pro 80 GS-ADSDLALRARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWRRD---DGTA-TITADSPETMVVSVDPLQPWR 149 (456) Q Consensus 80 ~~-~d~~~~~~l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~~~---~g~~-~i~~~~p~~~~~i~d~~~~~~ 149 (456) .. ........+.+++.. |. ...+...+...++.+|.+|+++-.+. .|.+ .+..++|..+.++.......- T Consensus 53 ~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~ 132 (723) T protein:vir:94 53 GPDGELDELHPLSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAV 132 (723) T ss_pred cCCCccchhhHHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccc Confidence 22 111122234455542 32 23455667778889999999886543 3544 356666665555432221100 Q ss_pred eEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHH Q lcl|Aclame:pro 150 IRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEP 229 (456) Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~ 229 (456) .......|......+.. ..+..+.+.|+.. .. +++.-.|.|.++. T Consensus 133 ~~~~~~~y~~~~~~G~~-~~~~~~dIiHir~-------------------------------~~---~~dg~~G~Spi~~ 177 (723) T protein:vir:94 133 PQAQIIGYVIERTDGVR-VPVLADEMLWLRF-------------------------------SD---PYDPLAVMAPWKA 177 (723) T ss_pred eeeeeeEEEEEecCcee-EEecccceEEecC-------------------------------CC---CCCCcccccHHHH Confidence 00000001000000000 0111122222110 00 0111136665554 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhhh------hccceeec--------- Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFEA------APGALWEL--------- 291 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~------~~~~~~~~--------- 291 (456) .. +.+...++-......+|.+ |-.++.-... .++.-..+. ..+.. ..|+...+ T Consensus 178 a~---~~i~~~~aa~~~~~~~f~NG~~p~giL~~~~l----~~e~~~~~~--~~~~~~~~G~~Nagk~~vL~g~~~~~~v 248 (723) T protein:vir:94 178 AR---AAVDADFYAATWQRQSFKNGARPGGVVNLGDM----DEQTFTKTV--AAFRSQVEGVQNAGRHLLIAGQGSDGGA 248 (723) T ss_pred HH---HHHHHHHHHHHHHHHHHhcCCCcceEEEcCCC----CHHHHHHHH--HHHHHHhhchhhcCcceeeccccccccc Confidence 43 3333332222233344444 3333321111 111111111 11111 11223332 Q ss_pred -CCCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 292 -PPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQS--AEGAHNIEKGFLFKCEDRLSIAKIGLEAI 367 (456) Q Consensus 292 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~S--g~Al~~~~~~l~~k~~~~~~~f~~~l~~~ 367 (456) +.+.++..+..... ..|++..+..+.+|++.-++|++.+++.+.+.+ ...+.+....|.-.+ +.+...+.+- T Consensus 249 l~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~~st~sN~e~~~~~f~~~tL~P~~----~~ie~~ln~~ 324 (723) T protein:vir:94 249 AGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLGGSTYENQAEAKAAVWTETLIPQM----EVMASITDLQ 324 (723) T ss_pred ccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCCCCCcccHHHHHHHHHHHHHHHHH----HHHHHHHhHh Confidence 24556655543222 347888888889999999999988876542222 222222222222222 2222222211 Q ss_pred HHHHHHhcCCCccccceEEecCC--CCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH--HHHHHHHHHHHHHHHh Q lcl|Aclame:pro 368 LVKALQIEGESVEDTVDVSFESP--DRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI--KQDDLDRAREQITLFA 443 (456) Q Consensus 368 ~~l~~~~~g~~~~~~i~v~f~~~--~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~--~~~e~~~~~e~~~~~~ 443 (456) + .. .....+.+.|+.. .-.|..+.++++.++++.|+++...+++.+|+.|-+- ..+-..-. ...++ T Consensus 325 L------l~-~~g~~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~~~~~~p~---~~~~a 394 (723) T protein:vir:94 325 L------LP-DIGWTVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIGQMTLTPY---RAQFA 394 (723) T ss_pred h------cc-cccCceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceeccc---ccccc Confidence 1 11 1123466777653 3578888999999999999999999999999875321 11110000 00122 Q ss_pred hccccccc-CCCC-C Q lcl|Aclame:pro 444 GNPVQRPQ-EDGS-R 456 (456) Q Consensus 444 ~~~~~~~~-~~Gs-~ 456 (456) ..+.+.|. ++|+ + T Consensus 395 ~~~~~~p~~~e~~~~ 409 (723) T protein:vir:94 395 PAPAPAPAVEEGAAR 409 (723) T ss_pred CCCCCCccchhhhHh Confidence 22222232 2332 2 No 210 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=98.15 E-value=3.6e-06 Score=50.43 Aligned_cols=426 Identities=9% Similarity=0.023 Sum_probs=184.4 Q ss_pred CCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHh---hccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDG----MSRVRLLARYS---NGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIP 73 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~----~~~~~~~~~YY---~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g 73 (456) |..-+.+++.++. +++... ..+++.+.+|. .+.-. .... ......+.++..+-+...++++++.|.+ T Consensus 1 m~~~~~~~l~~r~-~~l~~~R~~~e~~w~e~~~~~lP~~~~~~----~~~~-~~~~~~~~~~~dst~~~a~~~Las~l~~ 74 (559) T protein:vir:95 1 MAETTKERLNKQF-AQLESERQSFEPHWRELSDYINPRGSRFL----TSEV-NRNDRRNTRIIDSTGTMAARTLASGMMS 74 (559) T ss_pred CChhhHHHHHHHH-HHHHHHhhHHHHHHHHHHHHhccccCCcC----CCCC-CcccccccccccchHHHHHHHHHHHHHH Confidence 8877777655433 333332 23444445552 22210 0000 1111223345566777788888877764 Q ss_pred C------C-cccCCCcc--c---cHHH-------HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 74 N------G-ITVGGSAD--S---DLAL-------RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADS 134 (456) Q Consensus 74 ~------~-~~~~~~~d--~---~~~~-------~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~ 134 (456) - + |++...++ . +... .+.+.+..++|.....++.++...+|.|-+++-.+..+-++++.++ T Consensus 75 ~ltpp~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~Gta~l~~~~d~~~~~r~~~~~ 154 (559) T protein:vir:95 75 GITSPARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKSNLYQSLPQLYGSLGTYSTGAMAVLDDDEDIIRTMPFP 154 (559) T ss_pred hhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeEeecCCCceeEEEEee Confidence 3 2 23322111 1 1111 1344556678888899999999999999888776666667889999 Q ss_pred cceEEEEeeCCCCceeEEEEEEEEec-----------------------CCceeEEEEEeCCeEEEEEEcccccccccc- Q lcl|Aclame:pro 135 PETMVVSVDPLQPWRIRAAMRWWRDL-----------------------DAESDFAIVWSGDGWQKFARPCFVQSSSRR- 190 (456) Q Consensus 135 p~~~~~i~d~~~~~~~~~~i~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 190 (456) ..++++.-|+ .+ ++..++|.++-. +.....++++ +.+........... T Consensus 155 l~~~~v~~d~-~G-~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~------~~V~pr~~~~~~~~~ 226 (559) T protein:vir:95 155 IGSYYLANSP-RG-SVDTCFRKFSMTVRQLVQEFGLNNVSESVKSMWESGTYEKWIEVM------HSVYPNIDRDTSKLD 226 (559) T ss_pred cCeEEEeeCC-CC-CeEEEEEeEecCHHHHHHHcCcccCCHHHHHHHhcCCCCCeEEEE------EEEeccccccccccc Confidence 9988887764 33 445555543210 0011122222 11110000000000 Q ss_pred --------eeeccCCCcccccccccccCceeEEEEe------cCCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 191 --------RLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGE-VEPHIDIINRINRAELQLLSTMAIQAFRQ 255 (456) Q Consensus 191 --------~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~-~~~v~~liD~~~~~~s~~~~~~~~~~~~~ 255 (456) ........... ... +..+.-+|++.+ ....|.|- .+..++.+..+|...-..+..++....|. T Consensus 227 ~~~~pf~s~~~e~~~~~~~-~l~-esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~al~d~k~L~~l~~~~l~~~~~~~~pp 304 (559) T protein:vir:95 227 SKNKPFKSVYYEVGGDNDK-LLR-ESGFDEFPIMAPRWEVNGEDVYGSSCPGMLALGPVKALQLLQKRKSQLIDKATNPP 304 (559) T ss_pred cccceEEEEEEEecCCCce-eee-cCCcccCCccceeeeecCCccccccchHHHhhHHHHHHHHHHHHHHHHHHHHhcCc Confidence 00010000000 001 111222333222 23568884 78888999999988888888888888885 Q ss_pred HhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCc-----ceeeccccchHHHHHHHHHHHHHHHhhcCC-Chhh Q lcl|Aclame:pro 256 RALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGV-----DIWESQANDFTPMLSAIKEHIRQLSSATKT-PLPM 329 (456) Q Consensus 256 ~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~-p~~~ 329 (456) +.+.+... + ......+|.+...+... ........+.......++.+...|...--. +... T Consensus 305 ~~v~~~~~--------~------~~~~l~pgg~~~~~~~~~~~~i~p~~~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~ 370 (559) T protein:vir:95 305 MVAPTSLK--------N------QRASLLPGDITYIDQITGQDGFRPAYLVNPSTADLVADIQDTRQIINSAYFVDLFMM 370 (559) T ss_pred eecccccc--------c------cceeeeccceeeeCCCCCcccceeecccccchHHHHHHHHHHHHHHHHHhhhhhHHH Confidence 44422110 0 11223344444332111 111111122322222333333334322211 1122 Q ss_pred hc-cccccchHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhcC---CC---ccccceEEecCCCCCCH-- Q lcl|Aclame:pro 330 LM-PDSANQSAEGAHNIEKGFLFKC----EDRL-SIAKIGLEAILVKALQIEG---ES---VEDTVDVSFESPDRVTL-- 395 (456) Q Consensus 330 ~~-~~~~n~Sg~Al~~~~~~l~~k~----~~~~-~~f~~~l~~~~~l~~~~~g---~~---~~~~i~v~f~~~~~~~~-- 395 (456) +. .+..+.++.-++.....+.... .+.+ ..+.+-+.+++.++.+..- .+ ....++|++..++.+-- T Consensus 371 l~~r~~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~i~v~~is~La~aqk~ 450 (559) T protein:vir:95 371 LQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRKNMLPPPPDVMEGMPLKVEYISVMAQAQKS 450 (559) T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCcceEEEeecHHHHHHHH Confidence 22 2334457776665555444432 2222 2344555666666655221 11 12356777765543211 Q ss_pred ------HHHHHHHHHHHhcC-----CCcHHH----HHHhCCCCc------cHHHHHHHHHHHHHHHHHhhcc---ccccc Q lcl|Aclame:pro 396 ------GEKYSAASLAKAAG-----ESWASI----RRNILNYNA------DQIKQDDLDRAREQITLFAGNP---VQRPQ 451 (456) Q Consensus 396 ------~e~ad~~~kl~~~g-----~~s~~t----~~~~~~~~~------~~~~~~e~~~~~e~~~~~~~~~---~~~~~ 451 (456) ...++.+..+.+.+ .+.-.. ....+|... ++++++.++|++.+..+..... +.+.. T Consensus 451 ~~~~~i~~~~~~~~~laq~~Pevld~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~rqqr~~~qq~~q~~~~~~~aa~~~ 530 (559) T protein:vir:95 451 IGLSSLASTVNFIGQLAQVKPEALDKLNVDQAIDAFADMSGVSPTVIVPQEQVEQARQQRAQQQQQQQMMAMGMAAAQGV 530 (559) T ss_pred HHHHHHHHHHHHHHHHhccChhhhhcCCHHHHHHHHHHHhCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 11122222222211 111111 223456542 3444444443332211100000 00000 Q ss_pred ----------------------CCCCC Q lcl|Aclame:pro 452 ----------------------EDGSR 456 (456) Q Consensus 452 ----------------------~~Gs~ 456 (456) ..|++ T Consensus 531 ~~~~~~~~~~~~~l~~~~~~~~~~~~~ 557 (559) T protein:vir:95 531 KTLSEAKTSDPSVLSAMANAVSGQGGQ 557 (559) T ss_pred hccccccCCChhHHHHHHHhhcCcccc Confidence 11111 No 211 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=98.12 E-value=4.2e-06 Score=50.05 Aligned_cols=426 Identities=13% Similarity=0.040 Sum_probs=177.7 Q ss_pred CCCCCH--HHHHHHHHHHHHHH----HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MTASTP--AEWLPVLTKRIDDG----MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~~~t~--~~~~~~l~~~~~~~----~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) |..-|- .+-++...+.+..+ ..+.+.+.+|..-.- ........ +....++..+-+...++.+++.|.+- T Consensus 1 ~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~~---~~~~~~~~--~~~~~~~~dst~~~a~~~Las~l~~~ 75 (522) T protein:vir:94 1 MAEREGFAAEGAKAVYDRLKNGRQPYETRAQNCAAVTIPSL---FPKESDNS--STEYTTPWQAVGARCLNNLAAKLMLA 75 (522) T ss_pred CcccchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc---cCCCCCcc--cccccccccccHHHHHHHHHHHHHhh Confidence 654322 22233344444333 334445555533211 00111111 11112344556677777777777643 Q ss_pred -----C-cccCCC--------ccccHHH-----------HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce- Q lcl|Aclame:pro 75 -----G-ITVGGS--------ADSDLAL-----------RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA- 128 (456) Q Consensus 75 -----~-~~~~~~--------~d~~~~~-----------~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~- 128 (456) | |++... .+.+... .+...+..++|.....++.++...+|.|.+++-.+.+|.+ T Consensus 76 ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~ 155 (522) T protein:vir:94 76 LFPQSPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVSGNCLLYIPEPEQGTYS 155 (522) T ss_pred cCCCCcccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeeccCCCcee Confidence 1 222211 1111111 2334456678999999999999999999988777666644 Q ss_pred EEEEEccceEEEEeeCCCCceeEEEEEEEEec--------------C--CceeEEEEEeCCeEEEEEEccccccccccee Q lcl|Aclame:pro 129 TITADSPETMVVSVDPLQPWRIRAAMRWWRDL--------------D--AESDFAIVWSGDGWQKFARPCFVQSSSRRRL 192 (456) Q Consensus 129 ~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~--------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (456) .++.++-.+.++-.| ..+ ++..++|.++-. + .....+++|+ .+.. ....+.. T Consensus 156 ~~~~~pl~~y~v~~d-~~G-~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~------~v~~----~~~~~~~ 223 (522) T protein:vir:94 156 PMRMYRLVSYVVQRD-AFG-NILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYT------HIYR----QDDEYLR 223 (522) T ss_pred eEEEEEcceEEEeeC-CCc-CeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEE------EEEe----eCCceeE Confidence 477777666555444 333 454555444310 0 0112233332 1111 0111111 Q ss_pred eccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccc Q lcl|Aclame:pro 193 VTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLP 266 (456) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~ 266 (456) .....+..........++.-+|++.+ .+..|.|-.+..++.+..++...-......+....|...+. T Consensus 224 ~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~------- 296 (522) T protein:vir:94 224 YEEVEGIEVTGTDGSYPLTACPYIPVRMVRLDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVN------- 296 (522) T ss_pred EeeccCceecccCCCCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeec------- Confidence 11111221111112222333443332 24578998999999999999888888888888787764442 Q ss_pred ccccchhhhhhhhhhhhhccceeecCCC-cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhc-cccccchHHHHH Q lcl|Aclame:pro 267 NVDENGNAIDYASIFEAAPGALWELPPG-VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLM-PDSANQSAEGAH 343 (456) Q Consensus 267 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~-~~~~n~Sg~Al~ 343 (456) .+|.. ..........|.+....++ ....++. ..++..-...++.+...|....-+ + .+. .+..+.++.-++ T Consensus 297 ---~~g~~-~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~-~-~~~~~~~~r~TAtEV~ 370 (522) T protein:vir:94 297 ---PNGIT-QPRRLNKAATGEFVAGRVEDINFLQLTKGQDFTIAKSVADAIEQRLGWAFLL-N-SAVQRNAERVTAEEIR 370 (522) T ss_pred ---ccccc-cchheeccCCceeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhh-h-hhccCCCccccHHHHH Confidence 11100 0111122233333333222 2222322 234433333344443333332211 1 111 223345666655 Q ss_pred HHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhcC--CCccccceEEecCCCCCC-HHHHHHHHHHHHh--cCC--- Q lcl|Aclame:pro 344 NIEKGFLFKCED----RL-SIAKIGLEAILVKALQIEG--ESVEDTVDVSFESPDRVT-LGEKYSAASLAKA--AGE--- 410 (456) Q Consensus 344 ~~~~~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g--~~~~~~i~v~f~~~~~~~-~~e~ad~~~kl~~--~g~--- 410 (456) .....+.+...- .+ ..+.+-+.+++.++.+..- ......+++++..++..- ..+.++.+....+ +.+ T Consensus 371 ~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~v~~~s~La~~qr~~~~~~l~~~~~~ia~l~P~ 450 (522) T protein:vir:94 371 YVAGELEATLGGVYSVQSQELQLPIVRVLMNQLQSAGMIPDLPKEAVEPTVSTGLEALGRGQDLEKLTQAVNMMTGLQPL 450 (522) T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccEEeeEecHHHHHHHHHHHHHHHHHHHHHHhccch Confidence 554444433332 11 2233334444555433221 122334677765543211 1111222221111 111 Q ss_pred -----CcH----HHHHHhCCCCc-------cHHHHHHHHHH-HHHHHHHhhcccc-cccCCCCC Q lcl|Aclame:pro 411 -----SWA----SIRRNILNYNA-------DQIKQDDLDRA-REQITLFAGNPVQ-RPQEDGSR 456 (456) Q Consensus 411 -----~s~----~t~~~~~~~~~-------~~~~~~e~~~~-~e~~~~~~~~~~~-~~~~~Gs~ 456 (456) +.- ......+|+.+ +|++.+.+++. +++..+.+...++ .+...|++ T Consensus 451 ~~~~~id~d~~~~~~a~~~Gv~~~~ivr~~ee~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~ 514 (522) T protein:vir:94 451 SQDPDINLPTLKLRLLNALGIDTAGLLLTQDEKIQRMAEQSSQQAVVQGASAAGANMGAAVGQG 514 (522) T ss_pred hhhhcCCHHHHHHHHHHHcCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc Confidence 111 11234456633 23332222221 2222222211111 11112222 No 212 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=98.11 E-value=6.9e-08 Score=59.84 Aligned_cols=182 Identities=14% Similarity=0.069 Sum_probs=94.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhhhhhhhhhc---cceeecCCCcceeecccc Q lcl|Aclame:pro 227 VEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAP---GALWELPPGVDIWESQAN 303 (456) Q Consensus 227 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 303 (456) +-++..|.+.+. +..+........+.... +.+.....+.++.+ ..+ T Consensus 1 V~k~~~l~~~~~------------------------------~~~~~~~~r~~~~~~~~~~~~~~~ld~~~e~~e~-~~~ 49 (201) T protein:vir:10 1 MWKAKGLADLCD------------------------------DSDGAARLRLAQVDNNSGVGQAIGIDADSEEYNV-LNS 49 (201) T ss_pred CccchHHHHHhc------------------------------CChHHHHHHHHHHHHhhhhhhhheeecCCcceee-eec Confidence 101111111110 00000000111111111 11222223334433 346 Q ss_pred chHHHHHHHHHHHHHHHhhcCCChhhhcccc-c--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 304 DFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-A--NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVE 380 (456) Q Consensus 304 ~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~--n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~ 380 (456) +++++.+.+.....+|++.+++|...+-+.+ + |.||+.-..-|...+.- ..++.+.+.+++++.+.. . . T Consensus 50 ~lsGl~d~l~~~~~~iaa~s~iP~t~LfG~sp~Glnatge~d~~nyyd~i~~--~Qe~~l~p~le~l~~~~~----~--~ 121 (201) T protein:vir:10 50 DIGGIDTFLSQKFDRIVALSGIHEIILKGKNVGGVSASQNTALETFYGYVDR--KRKAELLPLLEFLLPFIV----T--E 121 (201) T ss_pred CcCChHHHHHHHHHHHHhHhcCchhhhcCCCCccccccchhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhc----C--C Confidence 6778888899999999999999986665433 2 45777544444443332 224677888888877643 2 3 Q ss_pred ccceEEecCCCCCCHHHHHH-------HHHHHHhcCCCcHHHHHHhC------CCCccHHHHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 381 DTVDVSFESPDRVTLGEKYS-------AASLAKAAGESWASIRRNIL------NYNADQIKQDDLDRAREQITLFAGNPV 447 (456) Q Consensus 381 ~~i~v~f~~~~~~~~~e~ad-------~~~kl~~~g~~s~~t~~~~~------~~~~~~~~~~e~~~~~e~~~~~~~~~~ 447 (456) .++.+.|+|-...+.++.|+ ++.+++++|++|...+++.| |+..+..-+.+.+. ...+++. T Consensus 122 ~~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~~~~------~e~~dp~ 195 (201) T protein:vir:10 122 QEWSVEFNPLSQVSDKDKSEILEKNVNSVAALIAAGIIDADEARDTLRAISTEVKIGEGSIQTEVVI------NESEDPL 195 (201) T ss_pred CCceEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCcCCCCCCCCCccccc------cccCCCC Confidence 46789999999888887654 55667778999987776543 33332111111110 1123445 Q ss_pred ccccCC Q lcl|Aclame:pro 448 QRPQED 453 (456) Q Consensus 448 ~~~~~~ 453 (456) ..|..+ T Consensus 196 ~~~~~~ 201 (201) T protein:vir:10 196 DVSANN 201 (201) T ss_pred CCCCCC Confidence 555555 No 213 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=98.11 E-value=4.5e-06 Score=49.92 Aligned_cols=373 Identities=12% Similarity=0.062 Sum_probs=149.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) |- +...+.++-..... .-..++-+....... .... .... ..+.....+|+..++-+..-|+.+-. T Consensus 1 Mg------~~~~f~~k~~~~~~---~~~~~~~~~~~~~~~--~~~~-~~~~---~~~~~V~~~I~~ia~~iA~~p~~~~~ 65 (403) T protein:vir:80 1 MG------LFNFFRRKTRSEPT---NAISWFLTQEAYDTL--AIPG-YTRL---SDNPEVRMAVHKIAELISSMTIHLMQ 65 (403) T ss_pred Cc------cccccccccccccc---chhhhhccccccccc--ccch-hhhh---hhhHHHHHHHHHHHHhhhhCceEEEE Confidence 11 11111110000000 000000000000000 0000 0000 11224456778888877776776421 Q ss_pred -Ccc--ccHHHHHHHHHHh--cCh---hHHHHHHHHHHhhC--CeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCce Q lcl|Aclame:pro 81 -SAD--SDLALRARRIWRD--NRM---DSVCKQWVKYGLDF--GESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWR 149 (456) Q Consensus 81 -~~d--~~~~~~l~~~~~~--n~~---~~~~~~~~~~~~~~--G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~ 149 (456) .++ ......+..++.. |.. ..+...++.+.+.. |.||+++..+..|.+ .+.+++|..+.++.++.. .. T Consensus 66 ~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g-~~ 144 (403) T protein:vir:80 66 NTDNGDIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTG-YQ 144 (403) T ss_pred ecCCceeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCc-eE Confidence 111 1112223444432 322 23334555566664 678888878888876 477888888776655331 11 Q ss_pred eEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHH Q lcl|Aclame:pro 150 IRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEP 229 (456) Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~ 229 (456) .+|.. ..|.++++.|+... ..|.-. -.|.|-++. T Consensus 145 -----~~y~~--------~~~~~~eiih~~~~------------------------------~~~~~~---~~G~s~~~~ 178 (403) T protein:vir:80 145 -----IWYQG--------KAYNYDEVLHFIVN------------------------------PDPEKP---YMGRGYRVV 178 (403) T ss_pred -----EEEee--------cccchhhEEEEecc------------------------------CCCcCc---cccccHHHH Confidence 01110 11222333322110 000000 025554443 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhh--hhh-hh-hhccceeecCCC-cceeecc Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDY--ASI-FE-AAPGALWELPPG-VDIWESQ 301 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~--~~~-~~-~~~~~~~~~~~~-~~~~~~~ 301 (456) +. +.++....-......++.. |..++.-.. . ..++....... ... .. ...|..+.++.+ .+..++. T Consensus 179 ~~---~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 252 (403) T protein:vir:80 179 LK---DIVNNLKQATTTKKSFMSGKYMPSLIVKVDA-A--TAELSSEEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVK 252 (403) T ss_pred HH---HHHHHHHHHHHHHHHHHhccCCcceEEEeCC-C--CChHHHHHHHHHHHHHHhhhhhcCCeeeecccccccceec Confidence 33 3333222211122233332 222221111 0 01111111100 011 11 122333444332 2333433 Q ss_pred ---ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 302 ---ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES 378 (456) Q Consensus 302 ---~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~ 378 (456) ..++ .+++..+....+||.+-++|++.+|.. ++.+.....+....|.-.+...+ ..|.+- +... T Consensus 253 ~l~~~d~-q~~e~~~~~~~~Ia~~fgVPp~~lg~~-~~~~~~~~~f~~~~l~P~~~~ie----~~l~~k------ll~~- 319 (403) T protein:vir:80 253 PLSLKDL-AIHETVELDKRTVAGIFGVPAFLLGVG-KYDKDEYNNFINSTILPIAKGIE----QELTRK------LLIS- 319 (403) T ss_pred cCCHHHH-HHHHHHHHhHHHHHHHhCCCHHHcCCC-CccHHHHHHHHHHHHHHHHHHHH----HHHHHh------ccCC- Confidence 2233 467888888899999999999998732 22233322222222222222222 222111 1111 Q ss_pred ccccceEEe--cCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-HHHHHHHHHHHHHhhcc----ccccc Q lcl|Aclame:pro 379 VEDTVDVSF--ESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-DDLDRAREQITLFAGNP----VQRPQ 451 (456) Q Consensus 379 ~~~~i~v~f--~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-~e~~~~~e~~~~~~~~~----~~~~~ 451 (456) . +..+.| ......|..+.++++.+++++|+++.-.+++.+|+.|.+-.+ .-....--.++...... ++..+ T Consensus 320 ~--~~~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~~n~~pl~~~~~~~~~k~ge~~~ 397 (403) T protein:vir:80 320 P--DLYFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVILENYIPLDKIGDQNKLKGGEKGG 397 (403) T ss_pred C--CcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccchhhccchhhccCCCCCC Confidence 1 233445 345567888999999999999999999999999987643111 00000000001011111 11111 Q ss_pred CCCCC Q lcl|Aclame:pro 452 EDGSR 456 (456) Q Consensus 452 ~~Gs~ 456 (456) ++|-+ T Consensus 398 ~~~~~ 402 (403) T protein:vir:80 398 ADGQT 402 (403) T ss_pred CCCCC Confidence 22222 No 214 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=98.11 E-value=4.5e-06 Score=49.91 Aligned_cols=385 Identities=13% Similarity=0.024 Sum_probs=165.2 Q ss_pred HHHHHHHHHHHH---HHHHHHHHH-----------HHHhhccCcc--c-------ccCcccchhhhhhhhhhcCChHHHH Q lcl|Aclame:pro 7 AEWLPVLTKRID---DGMSRVRLL-----------ARYSNGDAPL--P-------ELTRNTSAAWRSFQREARTNWGLMV 63 (456) Q Consensus 7 ~~~~~~l~~~~~---~~~~~~~~~-----------~~YY~g~~~i--~-------~~~~~~~~~~~~~~~k~~~n~~~~i 63 (456) +-+++++...-. ...++.+-- -+.+.|-++- . ..+..+.. ..-+.+.-...+ T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~-----~~al~~~~V~~c 75 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRE-----TRALRNMAVLRC 75 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceech-----hhhhccHHHHHH Confidence 234444332111 011111000 0011111100 0 00011110 001122334566 Q ss_pred HHHHHHhhhcCCcccCCCccc---cHHHHHHHHHHh--cCh---hHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEcc Q lcl|Aclame:pro 64 RDSVADRIIPNGITVGGSADS---DLALRARRIWRD--NRM---DSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSP 135 (456) Q Consensus 64 Vd~~~~~l~g~~~~~~~~~d~---~~~~~l~~~~~~--n~~---~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p 135 (456) |+..++-+-.-|+.+-..++. .....+..++.. |.. ..+...++..++.+|.||+++-.+......+..++| T Consensus 76 i~~Ia~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~L~pl~~ 155 (431) T protein:vir:10 76 VTLISGTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNRPIRLIPMDR 155 (431) T ss_pred HHHHHHhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCceEEEEEEcC Confidence 777777777777765221111 111234444432 322 345567788899999999999887533345778888 Q ss_pred ceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEE Q lcl|Aclame:pro 136 ETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPV 215 (456) Q Consensus 136 ~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 215 (456) ..+.+..++.. .+. ..+...++.. ..+....+.|+... T Consensus 156 ~~v~~~~~~~~--~~~---y~~~~~~g~~---~~~~~~dViHir~~---------------------------------- 193 (431) T protein:vir:10 156 GSAKGRLTSTW--QIV---YDYTTPTGDK---IELPAREVFHLRDL---------------------------------- 193 (431) T ss_pred ceeEEEEcCCC--eEE---EEEEeCCceE---EEEchhhEEEecCc---------------------------------- Confidence 88887765331 111 1122222211 11222333332100 Q ss_pred EEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhhhhhh------hhcc Q lcl|Aclame:pro 216 VVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYASIFE------AAPG 286 (456) Q Consensus 216 ~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~~~~~------~~~~ 286 (456) ..+...|.|-++.... .+.....-......+|.+ |--++.-.. ...++.-+.+. ..+. ...+ T Consensus 194 -~~dg~~G~spi~~~~~---~i~~~~~~~~~~~~~f~ng~~p~gil~~~~---~ls~e~~~~~~--~~~~~~~~g~~n~g 264 (431) T protein:vir:10 194 -SIDGVSGVSRVKLSGN---ALELAEQAERAASRTFRTGVMAGGAIEVPK---ELSDNAYGRMK--ASVQENHTGSENAG 264 (431) T ss_pred -CCCCcccccHHHHHHH---HHHHHHHHHHHHHHHHhccCCccEEEecCC---CCCHHHHHHHH--HHHHHHhcCccccC Confidence 0011125554444332 222222222222233333 322232111 11112111111 1111 1234 Q ss_pred ceeecCCCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHH-HHHHHHHHH Q lcl|Aclame:pro 287 ALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCED-RLSIAKIGL 364 (456) Q Consensus 287 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~-~~~~f~~~l 364 (456) ++..++.+.++.++...+. ..|++..+....+|+.+-++|++.++... +.++..++.....+...|-. +...++..+ T Consensus 265 ~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~-~~t~sn~eq~~~~f~~~tL~P~~~~ie~~l 343 (431) T protein:vir:10 265 SWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDD-TSWGSGIEQLAIFFIQYGLSHWFVSWEQAA 343 (431) T ss_pred CceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCC-CCccccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5677888888877654332 34677777888899999999999998542 22233333322222222111 111222222 Q ss_pred HHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCC----CcHHHHHHhCCCCccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 365 EAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGE----SWASIRRNILNYNADQIKQDDLDRAREQIT 440 (456) Q Consensus 365 ~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~----~s~~t~~~~~~~~~~~~~~~e~~~~~e~~~ 440 (456) .+.+ + .........+++.+....-.|..+.++++.++++.|+ ++.-.+++++|+.+-+.... ++..-... T Consensus 344 n~~L---l-~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g~lT~NE~R~~~gl~p~~~~~g--D~~~~p~n 417 (431) T protein:vir:10 344 ARAF---L-PEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEVREMLDLPRADDPVA--DQLRNPMT 417 (431) T ss_pred Hhhc---c-ChhhcCCceEEEechhhhccCHHHHHHHHHHHHhcccccCccCHHHHHHHhCCCCCCCccc--cceecccc Confidence 2111 0 0111112234444445566788899999999987765 78888999999876322111 10000111 Q ss_pred HHhhcccccccCCCC Q lcl|Aclame:pro 441 LFAGNPVQRPQEDGS 455 (456) Q Consensus 441 ~~~~~~~~~~~~~Gs 455 (456) ......+++ ..-+| T Consensus 418 ~~~~~~~~~-~p~~~ 431 (431) T protein:vir:10 418 QKQKGSGDE-PPATT 431 (431) T ss_pred cccCCCCCC-CCCCC Confidence 111111111 11122 No 215 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=98.03 E-value=6.4e-06 Score=49.05 Aligned_cols=419 Identities=14% Similarity=0.083 Sum_probs=172.7 Q ss_pred CCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhh-cCChHHHHHHHHHHhh- Q lcl|Aclame:pro 1 MTAST-------PAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA-RTNWGLMVRDSVADRI- 71 (456) Q Consensus 1 ~~~~t-------~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~-~~n~~~~iVd~~~~~l- 71 (456) +.+.. ..+-...+.. ..||-...++. ...+...++-+..+.+ .++=+-.+|+..+.=. T Consensus 15 ~~~~~~s~~~~~~~dg~~~~~~------------~~~~g~~~~~e-~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneai 81 (537) T protein:vir:10 15 KVPKGPSFVQKDSLDGSQPIVG------------GGYFGYSVDFD-GTIRNDHELITRYREMVLNPECDSAVDDVVNETI 81 (537) T ss_pred ccccCCcccCCCcccccceeec------------ccccccccccc-cccchHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 00000 0000000000 01111111110 0000111111111111 1112222222222211 Q ss_pred ----hcCCcccCCC-------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC----CCceEEEEEccc Q lcl|Aclame:pro 72 ----IPNGITVGGS-------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD----DGTATITADSPE 136 (456) Q Consensus 72 ----~g~~~~~~~~-------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~----~g~~~i~~~~p~ 136 (456) ..+||.+.-+ -.+....++..++.--+|+....+..+...+.|+-|+|...|. +|-..++.++|+ T Consensus 82 v~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fhKiid~k~pk~GI~ELr~lDPr 161 (537) T protein:vir:10 82 CGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLLDFDNRAYEIFRRWYVDGRLFFHKVIDPKKPRQGLVELRYVDPR 161 (537) T ss_pred EecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeeeCCc Confidence 1223333211 1122345566677667889999999999999999999988764 476788999999 Q ss_pred eEEEEeeCCCCceeEEEEEEE---EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCcee Q lcl|Aclame:pro 137 TMVVSVDPLQPWRIRAAMRWW---RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPP 213 (456) Q Consensus 137 ~~~~i~d~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (456) .+..+.--... ....++.. .........+.+|.+...+ ........++... +...|.+ T Consensus 162 ~i~~vR~i~~~--~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~--------~~~~~~vkI~~dA-----I~y~hSG---- 222 (537) T protein:vir:10 162 KIRKVTEYEAK--RPEALRTQDLNQQLTQQSASYFLYNPKGLK--------NSTNQGMKIAPDS-----IAYCHSG---- 222 (537) T ss_pred cceeeEeeccc--CCccceEEecceeeeecccceeeecccccc--------ccCCCceeccHhh-----eeeeccc---- Confidence 88666421100 00111111 0000111122334443221 0111111111100 0000111 Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhhhhhhhhccce---- Q lcl|Aclame:pro 214 PVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYASIFEAAPGAL---- 288 (456) Q Consensus 214 pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~~~~~~~~~~~---- 288 (456) ++..++..-.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... =+ ........+++ T Consensus 223 -l~d~n~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeq-Yl--r~iM~k~KNklVYDa 297 (537) T protein:vir:10 223 -IQDLNKNMVLSHLHKAIKAVNQL-RMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQ-YL--REVMGRYRNKLVYDA 297 (537) T ss_pred -ceeCCCCeeeeeehhhhHHHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--HHHHHhccceEEEec Confidence 11223333344444433222222 12223222222222222222100000 00000000 00 00000001111 Q ss_pred ------------------eec----CCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc-cc-hHHHHHH Q lcl|Aclame:pro 289 ------------------WEL----PPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQ-SAEGAHN 344 (456) Q Consensus 289 ------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~-Sg~Al~~ 344 (456) |.- ..+..+..++...--+-++-++-+.+.++...++|..-+...++ |. -|..|-- T Consensus 298 ~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnlgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItR 377 (537) T protein:vir:10 298 NTGEIKDDKKFMSMLEDFWLPRREGGRGTEISTLPGGQNLGELEDVKYFQKKLYKALNVPSSRLETETTFNIGRAAEITR 377 (537) T ss_pred cCceecccchhhhhhhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhH Confidence 110 11222233333221122333555566778888999888765432 22 3334666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHH-------HHHHHH--hc Q lcl|Aclame:pro 345 IEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYS-------AASLAK--AA 408 (456) Q Consensus 345 ~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad-------~~~kl~--~~ 408 (456) -+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++ ++..+. -. T Consensus 378 DEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvG 457 (537) T protein:vir:10 378 DEVKFQKFIARLRKRFSELFVDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVG 457 (537) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhh Confidence 66667777888999999999999887666666421 135778886654444333333 332221 01 Q ss_pred CCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcc-------------------cccccCCCCC Q lcl|Aclame:pro 409 GESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNP-------------------VQRPQEDGSR 456 (456) Q Consensus 409 g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~-------------------~~~~~~~Gs~ 456 (456) ..+|.+++++ .|.+++++++++..+.++|.-.....++ +..|+.|||- T Consensus 458 ky~s~dyi~k~ILr~tDeeI~~~~k~I~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (537) T protein:vir:10 458 KYFSANYIRTKVLKQTESEIKEIDKEIKQEIADGVIMDPQAMQAMEMGIGDEEPVPEGGEEPQTDPNS 525 (537) T ss_pred cccchHHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCcccccccccCCCCcccCCCCCCCcccCCcc Confidence 2469988865 7899999888776554444322211111 1133444433 No 216 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=98.03 E-value=6.5e-06 Score=49.01 Aligned_cols=430 Identities=12% Similarity=0.036 Sum_probs=187.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCcccccCc---ccchhhhhhhhhhcCChHHHHHHHHHHhhhcC-- Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRV-RLLARYSNGDAPLPELTR---NTSAAWRSFQREARTNWGLMVRDSVADRIIPN-- 74 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~-~~~~~YY~g~~~i~~~~~---~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~-- 74 (456) |...++...++.-.+.+...+..+ ..++++|+-- +|.+.. .........+.++..+-+...++.+++.|.+- T Consensus 1 M~~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~--lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~lt 78 (555) T protein:vir:98 1 MAEQTERKLLLSRWGQLRTERESWMSHWKEISDYL--LPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAGMMAGMT 78 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--CcccccccCCCCCcchhcccccccccHHHHHHHHHHHHHHhhc Confidence 888887665555555554444332 2223333321 121110 01111122334566677778888888877643 Q ss_pred ----C-cccCC--Ccccc---H-------HHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccce Q lcl|Aclame:pro 75 ----G-ITVGG--SADSD---L-------ALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPET 137 (456) Q Consensus 75 ----~-~~~~~--~~d~~---~-------~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~ 137 (456) | |++.. .+..+ . ...+...+..++|.....++.++...+|.|-+++-.+..+.++++.++..+ T Consensus 79 pp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~pl~~ 158 (555) T protein:vir:98 79 SPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSLTAGE 158 (555) T ss_pred CCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEeecce Confidence 2 23322 11111 1 112344566678888899999999999999998878777777888998888 Q ss_pred EEEEeeCCCCceeEEEEEEEEec-----------------------CCceeEEEEEeCCeEEEEEEccccc----cccc- Q lcl|Aclame:pro 138 MVVSVDPLQPWRIRAAMRWWRDL-----------------------DAESDFAIVWSGDGWQKFARPCFVQ----SSSR- 189 (456) Q Consensus 138 ~~~i~d~~~~~~~~~~i~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 189 (456) +.+.-|+. + .+..++|.++-. +.....++++ +.+...... .... T Consensus 159 ~~v~~d~~-G-~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~------~~V~pr~~~~~~~~~~~~ 230 (555) T protein:vir:98 159 YAIAADNQ-G-RVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVI------HAIEPRADRDPSKRDDRN 230 (555) T ss_pred eEEeeCCC-C-CEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEE------EEEeeccCcCcCCCCccc Confidence 88876643 3 455555543210 0111122222 221100000 0000 Q ss_pred ----ceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc Q lcl|Aclame:pro 190 ----RRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK 259 (456) Q Consensus 190 ----~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~ 259 (456) .+.+.....+.... . +..+.-+|++.+ .+..|.|-.+..++-+..++...-..+..++....|.+.+. T Consensus 231 ~p~~s~~~~~~~d~~~vl-~-esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~ 308 (555) T protein:vir:98 231 MAWKSVYFEPGADETRTL-R-ESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLP 308 (555) T ss_pred cceEEEEEEeccCCcccc-c-cCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeec Confidence 01111110000000 0 111222333322 24568998899999999998877667777777777654432 Q ss_pred CCCccccccccchhhhhhhhhhhhhccceeecC----CCcceeecc-ccchHHHHHHHHHHHHHHHhhcCCCh-hhhc-c Q lcl|Aclame:pro 260 STEHGLPNVDENGNAIDYASIFEAAPGALWELP----PGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPL-PMLM-P 332 (456) Q Consensus 260 G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~-~~~~-~ 332 (456) . +|.. ......+|.+.... .+.-...+. ..+.....+.++.+...|...--... ..+. . T Consensus 309 ~----------~~~~----~~~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~ 374 (555) T protein:vir:98 309 V----------SAKN----QDISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANG 374 (555) T ss_pred c----------cccc----ccceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCC Confidence 1 1100 11222333332222 122122222 23444444444444444433222110 1121 2 Q ss_pred ccccchHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhcCCC------ccccceEEecCCCCCCH------ Q lcl|Aclame:pro 333 DSANQSAEGAHNIEKGFLFKCED----R-LSIAKIGLEAILVKALQIEGES------VEDTVDVSFESPDRVTL------ 395 (456) Q Consensus 333 ~~~n~Sg~Al~~~~~~l~~k~~~----~-~~~f~~~l~~~~~l~~~~~g~~------~~~~i~v~f~~~~~~~~------ 395 (456) +..+.++.-++.....+.....- . ...+.+-+.+.+.++.+..-.+ ....++|.+-.++.+.- T Consensus 375 ~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~ 454 (555) T protein:vir:98 375 TNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATN 454 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHH Confidence 23345776665554444433322 1 1333344555555554421111 12346777766653321 Q ss_pred --HHHHHHHHHHHhcC-----CCcHH----HHHHhCCCC------ccHHHHHHHHHHHHHHH----HHhhcccc----cc Q lcl|Aclame:pro 396 --GEKYSAASLAKAAG-----ESWAS----IRRNILNYN------ADQIKQDDLDRAREQIT----LFAGNPVQ----RP 450 (456) Q Consensus 396 --~e~ad~~~kl~~~g-----~~s~~----t~~~~~~~~------~~~~~~~e~~~~~e~~~----~~~~~~~~----~~ 450 (456) ...++.+..+.+.+ .+.-. .....+|.. +++++++.++|.+.+.. ++.....+ -. T Consensus 455 ~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~ 534 (555) T protein:vir:98 455 SVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLG 534 (555) T ss_pred HHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 11122222222211 01111 123445653 23445444443322111 11111111 11 Q ss_pred cCCCCC Q lcl|Aclame:pro 451 QEDGSR 456 (456) Q Consensus 451 ~~~Gs~ 456 (456) ..+-++ T Consensus 535 ~~~~~~ 540 (555) T protein:vir:98 535 SVDTSK 540 (555) T ss_pred ccccCc Confidence 111111 No 217 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=98.03 E-value=6.5e-06 Score=49.01 Aligned_cols=430 Identities=12% Similarity=0.036 Sum_probs=187.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCcccccCc---ccchhhhhhhhhhcCChHHHHHHHHHHhhhcC-- Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRV-RLLARYSNGDAPLPELTR---NTSAAWRSFQREARTNWGLMVRDSVADRIIPN-- 74 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~-~~~~~YY~g~~~i~~~~~---~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~-- 74 (456) |...++...++.-.+.+...+..+ ..++++|+-- +|.+.. .........+.++..+-+...++.+++.|.+- T Consensus 1 M~~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~--lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~lt 78 (555) T protein:vir:10 1 MAEQTERKLLLSRWGQLRTERESWMSHWKEISDYL--LPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAGMMAGMT 78 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--CcccccccCCCCCcchhcccccccccHHHHHHHHHHHHHHhhc Confidence 888887665555555554444332 2223333321 121110 01111122334566677778888888877643 Q ss_pred ----C-cccCC--Ccccc---H-------HHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccce Q lcl|Aclame:pro 75 ----G-ITVGG--SADSD---L-------ALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPET 137 (456) Q Consensus 75 ----~-~~~~~--~~d~~---~-------~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~ 137 (456) | |++.. .+..+ . ...+...+..++|.....++.++...+|.|-+++-.+..+.++++.++..+ T Consensus 79 pp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~pl~~ 158 (555) T protein:vir:10 79 SPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSLTAGE 158 (555) T ss_pred CCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEeecce Confidence 2 23322 11111 1 112344566678888899999999999999998878777777888998888 Q ss_pred EEEEeeCCCCceeEEEEEEEEec-----------------------CCceeEEEEEeCCeEEEEEEccccc----cccc- Q lcl|Aclame:pro 138 MVVSVDPLQPWRIRAAMRWWRDL-----------------------DAESDFAIVWSGDGWQKFARPCFVQ----SSSR- 189 (456) Q Consensus 138 ~~~i~d~~~~~~~~~~i~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 189 (456) +.+.-|+. + .+..++|.++-. +.....++++ +.+...... .... T Consensus 159 ~~v~~d~~-G-~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~------~~V~pr~~~~~~~~~~~~ 230 (555) T protein:vir:10 159 YAIAADNQ-G-RVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVI------HAIEPRADRDPSKRDDRN 230 (555) T ss_pred eEEeeCCC-C-CEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEE------EEEeeccCcCcCCCCccc Confidence 88876643 3 455555543210 0111122222 221100000 0000 Q ss_pred ----ceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc Q lcl|Aclame:pro 190 ----RRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK 259 (456) Q Consensus 190 ----~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~ 259 (456) .+.+.....+.... . +..+.-+|++.+ .+..|.|-.+..++-+..++...-..+..++....|.+.+. T Consensus 231 ~p~~s~~~~~~~d~~~vl-~-esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~ 308 (555) T protein:vir:10 231 MAWKSVYFEPGADETRTL-R-ESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLP 308 (555) T ss_pred cceEEEEEEeccCCcccc-c-cCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeec Confidence 01111110000000 0 111222333322 24568998899999999998877667777777777654432 Q ss_pred CCCccccccccchhhhhhhhhhhhhccceeecC----CCcceeecc-ccchHHHHHHHHHHHHHHHhhcCCCh-hhhc-c Q lcl|Aclame:pro 260 STEHGLPNVDENGNAIDYASIFEAAPGALWELP----PGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPL-PMLM-P 332 (456) Q Consensus 260 G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~-~~~~-~ 332 (456) . +|.. ......+|.+.... .+.-...+. ..+.....+.++.+...|...--... ..+. . T Consensus 309 ~----------~~~~----~~~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~ 374 (555) T protein:vir:10 309 V----------SAKN----QDISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANG 374 (555) T ss_pred c----------cccc----ccceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCC Confidence 1 1100 11222333332222 122122222 23444444444444444433222110 1121 2 Q ss_pred ccccchHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhcCCC------ccccceEEecCCCCCCH------ Q lcl|Aclame:pro 333 DSANQSAEGAHNIEKGFLFKCED----R-LSIAKIGLEAILVKALQIEGES------VEDTVDVSFESPDRVTL------ 395 (456) Q Consensus 333 ~~~n~Sg~Al~~~~~~l~~k~~~----~-~~~f~~~l~~~~~l~~~~~g~~------~~~~i~v~f~~~~~~~~------ 395 (456) +..+.++.-++.....+.....- . ...+.+-+.+.+.++.+..-.+ ....++|.+-.++.+.- T Consensus 375 ~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~ 454 (555) T protein:vir:10 375 TNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATN 454 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHH Confidence 23345776665554444433322 1 1333344555555554421111 12346777766653321 Q ss_pred --HHHHHHHHHHHhcC-----CCcHH----HHHHhCCCC------ccHHHHHHHHHHHHHHH----HHhhcccc----cc Q lcl|Aclame:pro 396 --GEKYSAASLAKAAG-----ESWAS----IRRNILNYN------ADQIKQDDLDRAREQIT----LFAGNPVQ----RP 450 (456) Q Consensus 396 --~e~ad~~~kl~~~g-----~~s~~----t~~~~~~~~------~~~~~~~e~~~~~e~~~----~~~~~~~~----~~ 450 (456) ...++.+..+.+.+ .+.-. .....+|.. +++++++.++|.+.+.. ++.....+ -. T Consensus 455 ~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~ 534 (555) T protein:vir:10 455 SVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLG 534 (555) T ss_pred HHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 11122222222211 01111 123445653 23445444443322111 11111111 11 Q ss_pred cCCCCC Q lcl|Aclame:pro 451 QEDGSR 456 (456) Q Consensus 451 ~~~Gs~ 456 (456) ..+-++ T Consensus 535 ~~~~~~ 540 (555) T protein:vir:10 535 SVDTSK 540 (555) T ss_pred ccccCc Confidence 111111 No 218 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=98.03 E-value=6.5e-06 Score=49.01 Aligned_cols=430 Identities=12% Similarity=0.036 Sum_probs=187.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCcccccCc---ccchhhhhhhhhhcCChHHHHHHHHHHhhhcC-- Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRV-RLLARYSNGDAPLPELTR---NTSAAWRSFQREARTNWGLMVRDSVADRIIPN-- 74 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~-~~~~~YY~g~~~i~~~~~---~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~-- 74 (456) |...++...++.-.+.+...+..+ ..++++|+-- +|.+.. .........+.++..+-+...++.+++.|.+- T Consensus 1 M~~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~--lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~L~~~lt 78 (555) T protein:vir:10 1 MAEQTERKLLLSRWGQLRTERESWMSHWKEISDYL--LPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAGMMAGMT 78 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--CcccccccCCCCCcchhcccccccccHHHHHHHHHHHHHHhhc Confidence 888887665555555554444332 2223333321 121110 01111122334566677778888888877643 Q ss_pred ----C-cccCC--Ccccc---H-------HHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccce Q lcl|Aclame:pro 75 ----G-ITVGG--SADSD---L-------ALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPET 137 (456) Q Consensus 75 ----~-~~~~~--~~d~~---~-------~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~ 137 (456) | |++.. .+..+ . ...+...+..++|.....++.++...+|.|-+++-.+..+.++++.++..+ T Consensus 79 pp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~pl~~ 158 (555) T protein:vir:10 79 SPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSLTAGE 158 (555) T ss_pred CCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEeecce Confidence 2 23322 11111 1 112344566678888899999999999999998878777777888998888 Q ss_pred EEEEeeCCCCceeEEEEEEEEec-----------------------CCceeEEEEEeCCeEEEEEEccccc----cccc- Q lcl|Aclame:pro 138 MVVSVDPLQPWRIRAAMRWWRDL-----------------------DAESDFAIVWSGDGWQKFARPCFVQ----SSSR- 189 (456) Q Consensus 138 ~~~i~d~~~~~~~~~~i~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~- 189 (456) +.+.-|+. + .+..++|.++-. +.....++++ +.+...... .... T Consensus 159 ~~v~~d~~-G-~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~------~~V~pr~~~~~~~~~~~~ 230 (555) T protein:vir:10 159 YAIAADNQ-G-RVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVI------HAIEPRADRDPSKRDDRN 230 (555) T ss_pred eEEeeCCC-C-CEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEE------EEEeeccCcCcCCCCccc Confidence 88876643 3 455555543210 0111122222 221100000 0000 Q ss_pred ----ceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc Q lcl|Aclame:pro 190 ----RRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK 259 (456) Q Consensus 190 ----~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~ 259 (456) .+.+.....+.... . +..+.-+|++.+ .+..|.|-.+..++-+..++...-..+..++....|.+.+. T Consensus 231 ~p~~s~~~~~~~d~~~vl-~-esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~ 308 (555) T protein:vir:10 231 MAWKSVYFEPGADETRTL-R-ESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPLQLP 308 (555) T ss_pred cceEEEEEEeccCCcccc-c-cCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeec Confidence 01111110000000 0 111222333322 24568998899999999998877667777777777654432 Q ss_pred CCCccccccccchhhhhhhhhhhhhccceeecC----CCcceeecc-ccchHHHHHHHHHHHHHHHhhcCCCh-hhhc-c Q lcl|Aclame:pro 260 STEHGLPNVDENGNAIDYASIFEAAPGALWELP----PGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPL-PMLM-P 332 (456) Q Consensus 260 G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~-~~~~-~ 332 (456) . +|.. ......+|.+.... .+.-...+. ..+.....+.++.+...|...--... ..+. . T Consensus 309 ~----------~~~~----~~~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~dlf~~l~~~ 374 (555) T protein:vir:10 309 V----------SAKN----QDISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASFYADLFLMLANG 374 (555) T ss_pred c----------cccc----ccceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHhhcchhhhccCC Confidence 1 1100 11222333332222 122122222 23444444444444444433222110 1121 2 Q ss_pred ccccchHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhcCCC------ccccceEEecCCCCCCH------ Q lcl|Aclame:pro 333 DSANQSAEGAHNIEKGFLFKCED----R-LSIAKIGLEAILVKALQIEGES------VEDTVDVSFESPDRVTL------ 395 (456) Q Consensus 333 ~~~n~Sg~Al~~~~~~l~~k~~~----~-~~~f~~~l~~~~~l~~~~~g~~------~~~~i~v~f~~~~~~~~------ 395 (456) +..+.++.-++.....+.....- . ...+.+-+.+.+.++.+..-.+ ....++|.+-.++.+.- T Consensus 375 ~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~ 454 (555) T protein:vir:10 375 TNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATN 454 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHH Confidence 23345776665554444433322 1 1333344555555554421111 12346777766653321 Q ss_pred --HHHHHHHHHHHhcC-----CCcHH----HHHHhCCCC------ccHHHHHHHHHHHHHHH----HHhhcccc----cc Q lcl|Aclame:pro 396 --GEKYSAASLAKAAG-----ESWAS----IRRNILNYN------ADQIKQDDLDRAREQIT----LFAGNPVQ----RP 450 (456) Q Consensus 396 --~e~ad~~~kl~~~g-----~~s~~----t~~~~~~~~------~~~~~~~e~~~~~e~~~----~~~~~~~~----~~ 450 (456) ...++.+..+.+.+ .+.-. .....+|.. +++++++.++|.+.+.. ++.....+ -. T Consensus 455 ~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~ 534 (555) T protein:vir:10 455 SVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLG 534 (555) T ss_pred HHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 11122222222211 01111 123445653 23445444443322111 11111111 11 Q ss_pred cCCCCC Q lcl|Aclame:pro 451 QEDGSR 456 (456) Q Consensus 451 ~~~Gs~ 456 (456) ..+-++ T Consensus 535 ~~~~~~ 540 (555) T protein:vir:10 535 SVDTSK 540 (555) T ss_pred ccccCc Confidence 111111 No 219 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=97.94 E-value=1e-05 Score=47.95 Aligned_cols=392 Identities=11% Similarity=0.013 Sum_probs=156.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) |+=-+-+. +........ -..-+.+...-...|.-.+..+.+.. -...++..+|+..+..+.+-|+.+.. T Consensus 6 ~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~pp~~~~~La~~~--~~n~~v~scI~~ia~~ia~~~~~i~~ 74 (540) T protein:vir:41 6 LSIKSLEK--------YRAIKGDTD-SQALKEDRFEEYVEPKVHPLVLLSLL--QVNPYHASACSIKANDILRTGYLIDG 74 (540) T ss_pred cChhhccc--------hhhhhcccc-ccccccCCCCccccCCCCHHHHHHHH--HhcHHHHHHHHHHHHHHhcCCceEec Confidence 22111000 000000000 00001111100000110111122211 12347789999999999999988754 Q ss_pred CccccHHHHHHHHHHhc---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEE Q lcl|Aclame:pro 81 SADSDLALRARRIWRDN---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) . +..... .. .| ....+...++.+.+.+|.||+.+-.+..|.+ .+.+++|..+.+..+... + T Consensus 75 ~-~~~~~~----~l-pN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~---------~ 139 (540) T protein:vir:41 75 D-DGGVEE----LL-RACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSR---------Y 139 (540) T ss_pred C-ccchhh----hc-cCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCce---------e Confidence 3 222221 11 22 2345667788889999999999999988976 488889998877654321 1 Q ss_pred EEecCCce-eEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecC------CCCCchHHH Q lcl|Aclame:pro 157 WRDLDAES-DFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQN------PDGMGEVEP 229 (456) Q Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n------~~~~s~~~~ 229 (456) +...++.. .+...|........ ..+... ..+..=-|+|+++ ..|.|.+.. T Consensus 140 ~~~~d~~~~~~~~~~~~~~~~~~-----------------~~g~~~------~~~~~~eViHir~~~~~~~~~G~Spi~~ 196 (540) T protein:vir:41 140 MQTWDGIHVTYFKDYRYEGEVNP-----------------DNGEDQ------DGVGANEIIFIHLPSPICSYYGVPRYLS 196 (540) T ss_pred EeeecCceeeeeecccccceeec-----------------cccccc------eeecccceEEecCCCCCCCcccccHHHH Confidence 11111111 11111110000000 000000 0000001233321 135665444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhh---hhhh-------hhhccceeec--- Q lcl|Aclame:pro 230 HIDIINRINRAELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDY---ASIF-------EAAPGALWEL--- 291 (456) Q Consensus 230 v~~liD~~~~~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~---~~~~-------~~~~~~~~~~--- 291 (456) . ...+.....-......+|.+ |-.++ .|...+.....++...... ...+ ....++...+ T Consensus 197 ~---~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~ 273 (540) T protein:vir:41 197 A---APSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIP 273 (540) T ss_pred H---HHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchHHHHHHHHHHHHHHHHHhccccccccceEEEecC Confidence 3 33333222222222333333 22222 2222211111111111000 0011 1122333332 Q ss_pred ---CCCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccc---cccc-hHHHH--HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 292 ---PPGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPD---SANQ-SAEGA--HNIEKGFLFKCEDRLSIAK 361 (456) Q Consensus 292 ---~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~---~~n~-Sg~Al--~~~~~~l~~k~~~~~~~f~ 361 (456) +.+.++..+.... ...|++..+....+|+++-++|+..+|.. +.|- +.+.. .+....|.-.+ +.+. T Consensus 274 ~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~----~~ie 349 (540) T protein:vir:41 274 GGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQ----EIVS 349 (540) T ss_pred CCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHHHH----HHHH Confidence 2345555544222 22488888899999999999999998632 2221 22222 22222232222 3333 Q ss_pred HHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHh-CCCCccHHH----------HH Q lcl|Aclame:pro 362 IGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNI-LNYNADQIK----------QD 430 (456) Q Consensus 362 ~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~-~~~~~~~~~----------~~ 430 (456) ..+.+.+ + .. ...+..+.|....... .+.+..+.+++++|+++.-.+++. .|+.+.... ++ T Consensus 350 ~~ln~~L---~-~~---~~~~~~i~f~~~~ll~-~D~~~~~~~lv~~G~lT~NE~Re~L~g~e~gdd~~l~p~n~~~~~~ 421 (540) T protein:vir:41 350 SVLTDFI---Q-LK---LDPGARFVFNEEILME-SEFVHNYALLVQCGVLTPSEVREKLFGLDGGPDMFMVPSSIGKSAM 421 (540) T ss_pred HHHHHhh---h-hc---cCCceEEEecchhhcc-hHHHHHHHHHHhCCCCCHHHHHHHhCcCcCCCcccccccccccccc Confidence 3333221 1 11 1224566676544322 234444566788999998778764 465432111 00 Q ss_pred HHHHHH------HHHHHHhhccc--------cc-ccCC-CCC Q lcl|Aclame:pro 431 DLDRAR------EQITLFAGNPV--------QR-PQED-GSR 456 (456) Q Consensus 431 e~~~~~------e~~~~~~~~~~--------~~-~~~~-Gs~ 456 (456) ..+... .+......... .. |.++ +++ T Consensus 422 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (540) T protein:vir:41 422 KRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLEDKKKK 463 (540) T ss_pred cccccccCCCCccccccccchhcccccCcccccccccccccc Confidence 000000 00000000000 00 0000 111 No 220 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=97.90 E-value=1.2e-05 Score=47.60 Aligned_cols=428 Identities=10% Similarity=-0.035 Sum_probs=180.1 Q ss_pred CCCCCHHHHHHHHHHHHHH---HHHH-HHHHHHHhhccCccc----ccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDD---GMSR-VRLLARYSNGDAPLP----ELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~---~~~~-~~~~~~YY~g~~~i~----~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |+.++.. +++.|.+.+.. .+.. ...++++|+---+-. ..+.......++.+.++..+-+...++.+++.|. T Consensus 1 m~~d~~~-~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAs~l~ 79 (549) T protein:vir:10 1 MTNDDAK-ILQALNADHGRMKEKRQSYEAVWNDVIDYLMPRLDKFGQLPRPDSEKGRERSQKMFDSTAPLALRNFVAAMD 79 (549) T ss_pred CCcchHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccccccccCCCCCCcccccccccccchHHHHHHHHHHHHH Confidence 9998744 66666554433 2222 222233333221110 0011111111223334556667777888887776 Q ss_pred cC------C-cccCCCcc--cc---HHHHHH-------HHH--HhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEE Q lcl|Aclame:pro 73 PN------G-ITVGGSAD--SD---LALRAR-------RIW--RDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATIT 131 (456) Q Consensus 73 g~------~-~~~~~~~d--~~---~~~~l~-------~~~--~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~ 131 (456) +- | |++...++ .+ ....|. ..+ .+.+|.....++.++...+|.|-+++-.+..+.++++ T Consensus 80 ~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~l~~~~~~~~~~~f~ 159 (549) T protein:vir:10 80 SMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGALMIEHDVGKGIVYR 159 (549) T ss_pred hhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhcceeeEEeecCCCeeEEE Confidence 43 2 23332211 11 111121 211 2456778888899999999999988877766667888 Q ss_pred EEccceEEEEeeCCCCceeEEEEEEEEe-------cC---------------CceeEEEEEeCCeEEEEEEccc-c---- Q lcl|Aclame:pro 132 ADSPETMVVSVDPLQPWRIRAAMRWWRD-------LD---------------AESDFAIVWSGDGWQKFARPCF-V---- 184 (456) Q Consensus 132 ~~~p~~~~~i~d~~~~~~~~~~i~~~~~-------~~---------------~~~~~~~~~~~~~~~~~~~~~~-~---- 184 (456) .++..++++--|. .+ .+..++|.++- .. +....+++| +.+.... . T Consensus 160 ~~pl~~~~v~~d~-~G-~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~v~------~~V~pr~~~~~~~ 231 (549) T protein:vir:10 160 NVPMQRLWFAENN-SG-LIDKTHVQWELTLRQAAQRFGRENLSPSMQSTLEKDPEKSAIFY------HAVEPRADRDPRK 231 (549) T ss_pred EEEcCeEEEeeCC-CC-CeEEEEEEeecCHHHHHHhcCcccCCHHHHHHhhcCCCceEEEE------EEeecCCCCCccc Confidence 8888888777764 33 44555554321 00 112233333 2111000 0 Q ss_pred cccc--cc-eeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhH Q lcl|Aclame:pro 185 QSSS--RR-RLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQ 255 (456) Q Consensus 185 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~ 255 (456) .... .+ .+.... ++..... +..+.-+|++.+ .+..|.|-.+..++-+..++...-.....++....|. T Consensus 232 ~~~~~~pf~sv~~e~-~~~~il~--esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~ 308 (549) T protein:vir:10 232 LDGRNMQFASYWLDE-GRDRIVQ--NSGFRTFPFAIGRFYVGTDDVYGGSPAYDAMPDVRMANDMAKTNIRGAQKLVDPP 308 (549) T ss_pred cccccCceEEEEEEe-cCCEeec--cCCcccCCcceeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 0000 00 000001 1111100 111222333222 2457899889999999999988888888888877775 Q ss_pred HhhcCCCccccccccchhhhhhhhhhhhhccceee---cC-CCcceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhh Q lcl|Aclame:pro 256 RALKSTEHGLPNVDENGNAIDYASIFEAAPGALWE---LP-PGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPML 330 (456) Q Consensus 256 ~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~ 330 (456) ..+.- + + ..++. ...+|.+.. .+ .+..+..+. ..+.......++.+...|...--...... T Consensus 309 ~~v~~-~-g------~~~~~------~l~pgg~~~~~~~~~~~~~~~pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~ 374 (549) T protein:vir:10 309 LLANE-D-G------VLDGF------DLRSGALNWGGLNDKGEEMVKPLLTGKQAQIGIEFAQDTRQTINQWFYVTLFQI 374 (549) T ss_pred eeecc-c-c------ccccc------eeccCCccccccCCCCccceeeeccccchhHHHHHHHHHHHHHHHHHhhhhhhh Confidence 55421 0 0 00111 111222211 11 111222221 22333333333333333333221111000 Q ss_pred ccccccchHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhcCC-C--------ccccceEEecCCCCCCH- Q lcl|Aclame:pro 331 MPDSANQSAEGAHNIEKGFLFKC----EDRL-SIAKIGLEAILVKALQIEGE-S--------VEDTVDVSFESPDRVTL- 395 (456) Q Consensus 331 ~~~~~n~Sg~Al~~~~~~l~~k~----~~~~-~~f~~~l~~~~~l~~~~~g~-~--------~~~~i~v~f~~~~~~~~- 395 (456) -.+..+.++.-++.....+.... .+++ ..+.+-+.+.+.++.+ .|. + ....++++|..++.+.. T Consensus 375 ~~~~~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r-~g~lP~~p~~l~~~~~~~~i~yis~La~aq~ 453 (549) T protein:vir:10 375 LVDSGDMTATEVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAE-AGQLPDMPQELIDAGADVDVEYDSPLNKAMR 453 (549) T ss_pred hcCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCChhhhcCCceeEEEeecHHHHHHH Confidence 11233457766665554444442 2232 3334555666666554 232 1 11245666655443311 Q ss_pred HH-------HHHHHHHHHhcC-----CCc-HHH---HHHhCCCC------ccHHHHHHHHHHHHH----HHHHhhccccc Q lcl|Aclame:pro 396 GE-------KYSAASLAKAAG-----ESW-ASI---RRNILNYN------ADQIKQDDLDRAREQ----ITLFAGNPVQR 449 (456) Q Consensus 396 ~e-------~ad~~~kl~~~g-----~~s-~~t---~~~~~~~~------~~~~~~~e~~~~~e~----~~~~~~~~~~~ 449 (456) .+ .++.+..+.+.| .+. .+. ....+|.. +++++++.+++++.+ +.+.+. .+.. T Consensus 454 ~~~~~~i~~~~~~~~~laq~~Pe~ld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~~~~~qqq~~~~~~~a~-~a~~ 532 (549) T protein:vir:10 454 AGEGAAILQWLQQLGIVSQFDPAAAKVPNGARIARLLADYGGVPVEAMSTDEELQAQQAAEAQAAQMQQMLAAAP-VAAG 532 (549) T ss_pred HHHHHHHHHHHHHHHHHhccChhHHhcCCHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH Confidence 11 112222221211 111 111 22345643 234444433332222 111111 1111 Q ss_pred ccCCCCC Q lcl|Aclame:pro 450 PQEDGSR 456 (456) Q Consensus 450 ~~~~Gs~ 456 (456) ...+.|+ T Consensus 533 ~a~~~~~ 539 (549) T protein:vir:10 533 AIKDLSD 539 (549) T ss_pred HHHhhhh Confidence 1122222 No 221 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=97.86 E-value=1.4e-05 Score=47.13 Aligned_cols=435 Identities=11% Similarity=0.013 Sum_probs=176.6 Q ss_pred CCCCC----HHHHHHHHHHHHHHH----HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTAST----PAEWLPVLTKRIDDG----MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t----~~~~~~~l~~~~~~~----~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |..-- .++-++...+++... ..+.+.+.+|..-.. ..+..... +....++..+-....++.+++.|. T Consensus 1 m~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~---~~~~~~~~--~~~~~~~~dst~~~a~~~Laa~l~ 75 (535) T protein:vir:33 1 MADSKRTGLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPSL---FPKESDNE--STDYTTPWQAVGARGLNNLASKLM 75 (535) T ss_pred CChhhhhccChhHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc---cCCCCCcc--cccccccccccHHHHHHHHHHHHH Confidence 54222 233344444444443 334445555533321 00110000 111112334455667777777665 Q ss_pred cC-----C-cccCCCc--------ccc----H-------HHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc Q lcl|Aclame:pro 73 PN-----G-ITVGGSA--------DSD----L-------ALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT 127 (456) Q Consensus 73 g~-----~-~~~~~~~--------d~~----~-------~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~ 127 (456) +- | |++...+ +.. . ...+...+..++|.....++.++...+|.|.+++-.+..+. T Consensus 76 ~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~ 155 (535) T protein:vir:33 76 LALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLPEPEGSY 155 (535) T ss_pred HhhcCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEeecCCCCc Confidence 42 1 2222111 000 1 11234446677899999999999999999988887766666 Q ss_pred eEEEEEccceEEEEeeCCCCceeEEEEEEEEec-------CCc-----eeEEEEEeCCeEEEEEEcccccccccceeecc Q lcl|Aclame:pro 128 ATITADSPETMVVSVDPLQPWRIRAAMRWWRDL-------DAE-----SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTR 195 (456) Q Consensus 128 ~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (456) .+++.++-.+.++..| ..+ ++..++|.++-. .+. ......+....+++.+..... ...+..... T Consensus 156 ~~f~~~pl~~~~v~~d-~~G-~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~~~~--~~~~~~~~~ 231 (535) T protein:vir:33 156 NPMKLYRLSSYVVQRD-AYG-NVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHVYLDEE--SGDYLKYEE 231 (535) T ss_pred eeeEEEEcCeeEEeeC-CCC-CeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEEEeeCC--CCcEEEEEE Confidence 7888887777655555 344 444455544311 000 000001111122222111000 000000111 Q ss_pred CCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc Q lcl|Aclame:pro 196 ISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD 269 (456) Q Consensus 196 ~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d 269 (456) ..+...........++-+|++.+ .+..|.|-.+..++.+..+|...-......+....|...+. T Consensus 232 ~~~~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~---------- 301 (535) T protein:vir:33 232 VEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVN---------- 301 (535) T ss_pred EeCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeec---------- Confidence 11111111111112333343322 24578998899999999999888888888887777754431 Q ss_pred cchhhhhhhhhhhhhccceeecCC-Ccceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHH Q lcl|Aclame:pro 270 ENGNAIDYASIFEAAPGALWELPP-GVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEK 347 (456) Q Consensus 270 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~ 347 (456) .+|.. ........+.|.+....+ +....++. ..++......++.+...|....- .+.....+....++.-++.... T Consensus 302 ~~g~~-~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~-~~~~~~~~~~r~TAtEV~~r~~ 379 (535) T protein:vir:33 302 PAGIT-QPRRLTKAQTGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFM-LNSAVQRTGERVTAEEIRYVAS 379 (535) T ss_pred ccccc-chhhcccCCceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHh-hhhcccCCCccccHHHHHHHHH Confidence 11100 011112223333333222 22233222 23444444444444444433221 1111112233456665554444 Q ss_pred HHHHHHHH----HH-HHHHHHHHHHHHHHHHhcC--CCccccceEEecCCCCCC-HHHHHHHHHH----HHhcC------ Q lcl|Aclame:pro 348 GFLFKCED----RL-SIAKIGLEAILVKALQIEG--ESVEDTVDVSFESPDRVT-LGEKYSAASL----AKAAG------ 409 (456) Q Consensus 348 ~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g--~~~~~~i~v~f~~~~~~~-~~e~ad~~~k----l~~~g------ 409 (456) .+.....- .+ ..+.+-+.+++.++.+-.- ..+...++++|..++... ..+.++.+.. +.+.+ T Consensus 380 E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~~d~ 459 (535) T protein:vir:33 380 ELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPMQGDP 459 (535) T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhhChhhhhc Confidence 43333322 11 2233334444444433211 122345777776654321 1112222211 11110 Q ss_pred CCcHHH----HHHhCCCCc-------cHHHHHHHHHHHHHHHHHhhcc----cccccCCCCC Q lcl|Aclame:pro 410 ESWASI----RRNILNYNA-------DQIKQDDLDRAREQITLFAGNP----VQRPQEDGSR 456 (456) Q Consensus 410 ~~s~~t----~~~~~~~~~-------~~~~~~e~~~~~e~~~~~~~~~----~~~~~~~Gs~ 456 (456) .+.-.. ....+|..+ ++++.+.+++.+.+..+.+... ...+.-+|.. T Consensus 460 ~id~d~~~~~~a~~~Gvp~~~i~~~~ee~~~~~~q~~~~~~~~~~~~~~g~~~~~~~~~~~~ 521 (535) T protein:vir:33 460 DINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQTGVENAAAAGGAGVGALATSSPE 521 (535) T ss_pred cCCHHHHHHHHHHHcCCCHhHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhcCCh Confidence 011111 123355542 2333332222221111111111 1111112222 No 222 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=97.68 E-value=2.9e-05 Score=45.48 Aligned_cols=265 Identities=9% Similarity=0.025 Sum_probs=120.7 Q ss_pred hhcCCcccCCCccccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeC Q lcl|Aclame:pro 71 IIPNGITVGGSADSDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDP 144 (456) Q Consensus 71 l~g~~~~~~~~~d~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~ 144 (456) +..-|+.+.... .+....+..++.. | ....+...++.+.+.+|.||+.+..+.+|.+ .+.+++|..+.+..++ T Consensus 1 ia~l~~~~~~~~-~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v~~~~ 79 (278) T protein:vir:78 1 MASLPLKMYEDY-KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIEN 79 (278) T ss_pred CccceeEEEecC-cccccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEEEEcC Confidence 333344332111 1112223333321 2 2345667888899999999999999999976 5888899999888765 Q ss_pred CCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCC Q lcl|Aclame:pro 145 LQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGM 224 (456) Q Consensus 145 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~ 224 (456) ... .+ +|....+.+.. ..+.++.+.++... +.. ....|. T Consensus 80 ~~~-~~-----~y~~~~~~g~~-~~~~~~evih~~~~--------------------------~~~--------~~~~G~ 118 (278) T protein:vir:78 80 QSR-EL-----YYSIHAATGNK-LIVHNMDMLHFKHI--------------------------VAS--------NMVQGI 118 (278) T ss_pred CCc-eE-----EEEEEcCCceE-EEEccccEEEECCC--------------------------CCC--------CCeeec Confidence 432 11 11111111111 12333344333110 000 011366 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh-hhhhhhhccceeecCCCcceeecccc Q lcl|Aclame:pro 225 GEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY-ASIFEAAPGALWELPPGVDIWESQAN 303 (456) Q Consensus 225 s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (456) |.+..+...++........ ....+..+-..+.... ....++..+.+.. ....-...+++..++++.++.++... T Consensus 119 s~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~i~~~~--~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~ 193 (278) T protein:vir:78 119 SPIDVLKNTTDFDNAVRTF---NLTEMQKPDSFMLKYG--SNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKK 193 (278) T ss_pred cHHHHHHHHHHHHHHHHHH---HHHHhcCCCcEEEEeC--CCCCHHHHHHHHHHHHHHhccCCCceecCCCceEEEccCC Confidence 7666655555543332211 1222232211111111 1111222222211 11111234567778888888766533 Q ss_pred c-hHHHHHHHHHHHHHHHhhcCCChhhhcccc-ccc-hHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 304 D-FTPMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQ-SAE-GAH-NIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES 378 (456) Q Consensus 304 ~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~n~-Sg~-Al~-~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~ 378 (456) . ...+++..+....+|++.-++|+..+|... +|- +.+ +.+ +....+.-.++. +...+.+. +.... T Consensus 194 ~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~~~~~~~~~~~~l~P~~~~----i~~~ln~~------L~~~~ 263 (278) T protein:vir:78 194 YVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQ----YEEEFNRK------LLTKT 263 (278) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHH----HHHHHHhh------cCChh Confidence 2 234778888888999999999999887543 221 222 121 111122222222 22222111 11111 Q ss_pred c-cccceEEecCCCC Q lcl|Aclame:pro 379 V-EDTVDVSFESPDR 392 (456) Q Consensus 379 ~-~~~i~v~f~~~~~ 392 (456) + .....+.|.-... T Consensus 264 e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 264 DREKIGILNLTLNLI 278 (278) T ss_pred HhcCCceEEEecccC Confidence 1 1223455543332 No 223 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=97.68 E-value=2.9e-05 Score=45.42 Aligned_cols=435 Identities=11% Similarity=0.010 Sum_probs=180.0 Q ss_pred CCCCCHH----HHHHHHHHHHHHH----HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTPA----EWLPVLTKRIDDG----MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~~----~~~~~l~~~~~~~----~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |.....+ +.++...+++... ..+.+.+.+|..-.- ..+.... -+....++..+-....++.+++.|. T Consensus 1 m~~~~~~~~~~~~~k~r~~~l~~~R~~~e~~w~e~~~~~lP~~---~~~~~~~--~~~~~~~~~dst~~~a~~~Laa~l~ 75 (535) T protein:vir:15 1 MADSKRTGLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPSL---FPKESDN--ESTDYTTPWQAVGARGLNNLASKLM 75 (535) T ss_pred CCccchhccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc---cCCCCCc--ccccccccccccHHHHHHHHHHHHH Confidence 7655533 3344444444443 334445555533211 1111100 0111122344556667777777665 Q ss_pred cC--C----cccCCCc--------ccc-----------HHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc Q lcl|Aclame:pro 73 PN--G----ITVGGSA--------DSD-----------LALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT 127 (456) Q Consensus 73 g~--~----~~~~~~~--------d~~-----------~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~ 127 (456) +- | |++...+ +.. ....+...+..++|.....++.++...+|.|-+++-.+.++. T Consensus 76 ~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~ 155 (535) T protein:vir:15 76 LALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLPEPEGSY 155 (535) T ss_pred HhhcCCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEeecCCCCc Confidence 42 1 2322111 111 112234456678899999999999999999987776666666 Q ss_pred eEEEEEccceEEEEeeCCCCceeEEEEEEEEec-------CCc-----eeEEEEEeCCeEEEEEEcccccccccceeecc Q lcl|Aclame:pro 128 ATITADSPETMVVSVDPLQPWRIRAAMRWWRDL-------DAE-----SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTR 195 (456) Q Consensus 128 ~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (456) .+++.++-.+.++..|. .+ ++..++|.++-. .+. ......+....+++.+.... ....+..... T Consensus 156 ~~f~~~pl~~~~v~~d~-~G-~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~--~~~~~~~~~e 231 (535) T protein:vir:15 156 NPMKLYRLSSYVVQRDA-YG-NVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHVYLDE--ESGDYLKYEE 231 (535) T ss_pred eeeEEEEcCeeEEeeCC-CC-CeeEEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEEEEec--CCCcEEEEEE Confidence 78888887776666553 33 444555544311 000 00000111112222221100 0000111111 Q ss_pred CCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc Q lcl|Aclame:pro 196 ISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD 269 (456) Q Consensus 196 ~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d 269 (456) ..+...........++-+|++.+ .+..|.|-.+..++.+..+|...-......+....|...+. T Consensus 232 ~~g~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~---------- 301 (535) T protein:vir:15 232 VEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVN---------- 301 (535) T ss_pred eeCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeec---------- Confidence 11111111111222333343322 24578998899999999999888888888887777754431 Q ss_pred cchhhhhhhhhhhhhccceeecCC-Ccceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHH Q lcl|Aclame:pro 270 ENGNAIDYASIFEAAPGALWELPP-GVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEK 347 (456) Q Consensus 270 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~ 347 (456) .+|.. ........+.|.+....+ +....++. ..++......++.+...|....- .+.....+..+.++.-++.... T Consensus 302 ~~g~~-~~~~l~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~-~~~~~~~~~~r~TAtEV~~r~~ 379 (535) T protein:vir:15 302 PAGIT-QPRRLTKAQTGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFM-LNSAVQRTGERVTAEEIRYVAS 379 (535) T ss_pred ccccc-cchhcccCCceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHh-hhhcccCCCccccHHHHHHHHH Confidence 11100 011112223333333222 22233222 23444444444444444433221 1111112233456665554444 Q ss_pred HHHHHHHH----HH-HHHHHHHHHHHHHHHHhcC--CCccccceEEecCCCCCC-HHHHHHHHHHHHh--cCC------- Q lcl|Aclame:pro 348 GFLFKCED----RL-SIAKIGLEAILVKALQIEG--ESVEDTVDVSFESPDRVT-LGEKYSAASLAKA--AGE------- 410 (456) Q Consensus 348 ~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g--~~~~~~i~v~f~~~~~~~-~~e~ad~~~kl~~--~g~------- 410 (456) .+.....- .+ ..+.+-+.+++.++.+-.- ..+...++++|..++... ..+.++.+....+ +++ T Consensus 380 E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~~ld~ 459 (535) T protein:vir:15 380 ELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPMQGDP 459 (535) T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhcChhhhhc Confidence 43333322 11 2233334444444433211 122345777776654321 1112222211111 011 Q ss_pred -CcHHH----HHHhCCCCc-------cHHHHHHHHHHHHH-HHHHhhcccccccCCCCC Q lcl|Aclame:pro 411 -SWASI----RRNILNYNA-------DQIKQDDLDRAREQ-ITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 411 -~s~~t----~~~~~~~~~-------~~~~~~e~~~~~e~-~~~~~~~~~~~~~~~Gs~ 456 (456) +.-.. ....+|..+ ++++++.+++.+.+ ..+.+...++.-...+++ T Consensus 460 ~id~d~~~~~~a~~~Gvp~~~i~~~~eev~~~~~q~~~~~~~~~~a~~~g~~~~~~~~~ 518 (535) T protein:vir:15 460 DINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQTGIENAAATGGAGVGALATS 518 (535) T ss_pred cCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhcc Confidence 11111 123355442 23333222222211 111222222222222333 No 224 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=97.66 E-value=3.1e-05 Score=45.27 Aligned_cols=399 Identities=10% Similarity=-0.005 Sum_probs=148.8 Q ss_pred CC--CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----cccccCcccchhhhhhhhhhcCChHHHHHHH Q lcl|Aclame:pro 1 MT--AST-------PAEWLPVLTKRIDDGMSRVRLLARYSNGDA-----PLPELTRNTSAAWRSFQREARTNWGLMVRDS 66 (456) Q Consensus 1 ~~--~~t-------~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~-----~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~ 66 (456) |. .-. |..+...-..++..-+... ...=|.|-. .|+. ....-.-+.+. .......-+++. T Consensus 1 m~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~iLr-~~~~~~ly~~m---~~D~hi~s~l~~ 74 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPV--MSTSYDVVVDREFDELLQ-GKDGLLVYHKM---LSDGTVKNALNY 74 (448) T ss_pred CCCCCCCCcccCCcccccchhhhhhhccchhhh--cccccccccccchhHhhc-cccchHHHHHH---hhChHHHHHHHH Confidence 11 000 0000000000000000000 000000000 0000 00000011111 113455666667 Q ss_pred HHHhhhcCCcccCCCcccc----HHHHHHHHHHh-------cChhHHHHHHHHHHhhCCeeE-EEEEe-CCCCceEEEEE Q lcl|Aclame:pro 67 VADRIIPNGITVGGSADSD----LALRARRIWRD-------NRMDSVCKQWVKYGLDFGESY-LTCWR-RDDGTATITAD 133 (456) Q Consensus 67 ~~~~l~g~~~~~~~~~d~~----~~~~l~~~~~~-------n~~~~~~~~~~~~~~~~G~a~-~~v~~-~~~g~~~i~~~ 133 (456) ....+.+.++++....++. ..+.+.+.+.. ..|+.++.++ .++.-||.+. +++|. +.+|...+..+ T Consensus 75 Rk~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~-lda~~~G~s~~Eivw~~~~dg~~~~~~l 153 (448) T protein:vir:77 75 IFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIY-ENAYIYGMAAGEIVLTLGADGKLILDKI 153 (448) T ss_pred HHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHH-HHhhhhcceeEEEEEeecCCCceeeccc Confidence 7777777788774222221 22223333332 2466677666 5888999875 57774 56776543332 Q ss_pred ---ccceE-EEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccccccccccc Q lcl|Aclame:pro 134 ---SPETM-VVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVT 209 (456) Q Consensus 134 ---~p~~~-~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (456) ++... ...+|+.. .. .+.+....+... .... ...+.. T Consensus 154 ~~r~~~~~~~f~~~~~~----------------~l---~~~~~~~~~~~~--------------~~~~------~~~~lP 194 (448) T protein:vir:77 154 VPIHPFNIDEVLYDEEG----------------GP---KALKLSGEVKGG--------------SQFV------NGLEIP 194 (448) T ss_pred cccCCCccceeeeecCC----------------ce---EEEecCCccccc--------------ccCC------Cccccc Confidence 22211 11122211 10 111100000000 0000 000001 Q ss_pred CceeEEEE---ecCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhh-hhhhhhh Q lcl|Aclame:pro 210 GSPPPVVV---YQNPDGMGEVEPHID--IINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAID-YASIFEA 283 (456) Q Consensus 210 ~~~~pv~~---~~n~~~~s~~~~v~~--liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~-~~~~~~~ 283 (456) .+...+.+ .-|+.|.|.+..+.- +...+ .+.+.+..++.|+.|.++.+-...... .+++...+. ....+.. T Consensus 195 ~~~~i~~~~~~~g~p~g~gLlr~~~w~~~fK~~--~~~~w~~f~E~yG~P~~vgky~~ga~~-~~~~~~~l~~av~~i~~ 271 (448) T protein:vir:77 195 IWKTVVFLHNDDGSFTGQSALRAAVPHWLAKRA--LILLINHGLERFMIGVPTLTIPKSVRQ-GTKQWEAAKEIVKNFVQ 271 (448) T ss_pred cceEEEEecCCcCCcccchHHHHHHHHHHHHHh--hHHHHHHHHHHcCCceeEEecCCCCCC-CHHHHHHHHHHHHHHhc Confidence 11111111 125678888776543 33333 467777888999999887763211110 111111111 1111222 Q ss_pred hccceeecCCCcceeeccc-cchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 284 APGALWELPPGVDIWESQA-NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKI 362 (456) Q Consensus 284 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~ 362 (456) +......++.+.++..+.. .....+...++.+-.+|+...--.....+.. ++.++.+......-.......-.+.+.. T Consensus 272 g~~a~~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~-~g~~~~~~~~~~~v~~~~~~aDa~~i~~ 350 (448) T protein:vir:77 272 KPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARALGIDFNTVQLN-MGVQAVNIGEFVSLTQQTIISLQREFAS 350 (448) T ss_pred CCceEEEecCCceEEEEecCCCccCHHHHHHHHHHHHHHHHhccccccccc-cchhhhhhhhHHHHHHHHHHHHHHHHHH Confidence 3333445666665432221 1122344566666677776442211111111 1222223222111112222223334445 Q ss_pred HHH-HHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHH-HHHHHH Q lcl|Aclame:pro 363 GLE-AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDR-AREQIT 440 (456) Q Consensus 363 ~l~-~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~-~~e~~~ 440 (456) .+. +++.-++.+..-....--.+.|....+.+..+.++.+.+|++. .++.+|+.+......+... ..++.. T Consensus 351 tln~~Li~~l~~lNfg~~~~~P~~~f~~~e~eDl~~~a~~~~~l~~~-------~~~~~~ip~~~~~~~~~~~~~~~~~~ 423 (448) T protein:vir:77 351 AVNLYLIPKLVLPNWPGATRFPRLTFEMEERNDFSAAANLMGMLINA-------VKDSEDIPTELKALIDALPSKMRRAL 423 (448) T ss_pred HHHHHHHHHHHHhcCCCCCCCCEEEecCCChhhHHHHHHHhHHHHHH-------HHHHhcCCccCCcCCCCCchhccccc Confidence 554 3555445554222222236778888889999999988887642 2333343221101111110 000000 Q ss_pred HHh-hcccccccCCCCC Q lcl|Aclame:pro 441 LFA-GNPVQRPQEDGSR 456 (456) Q Consensus 441 ~~~-~~~~~~~~~~Gs~ 456 (456) ... .......+...|+ T Consensus 424 ~~~~~~~~~~~~~~~~~ 440 (448) T protein:vir:77 424 GVVDEVREAVRQPADSR 440 (448) T ss_pred CCCCCCCchhhcchhhH Confidence 000 0011111233333 No 225 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=97.63 E-value=3.5e-05 Score=44.98 Aligned_cols=420 Identities=12% Similarity=0.058 Sum_probs=177.3 Q ss_pred CCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhh-cCChHHHHHHHHHHhh-----h Q lcl|Aclame:pro 1 MTASTPA--EWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA-RTNWGLMVRDSVADRI-----I 72 (456) Q Consensus 1 ~~~~t~~--~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~-~~n~~~~iVd~~~~~l-----~ 72 (456) -|.-+|. +=...+.. -.||-.-.++. ...+...++-+..+.+ .++=+-.+|+..+.=. . T Consensus 19 ~s~~~~~~~dg~~~i~~------------~~~~~~~~~~e-~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~ 85 (533) T protein:vir:10 19 PSFVQKDNLDGSQPVSG------------GGYYGYTVDFD-GQVRNEYQLISRYREMVLQPECDSAVDDIVNETICGNFD 85 (533) T ss_pred CCCCCCCcccccceeec------------ccccceeeecc-cccchHHHHHHHHHHHhhccchhhHHHHhhcceeeecCC Confidence 1111110 00000000 01111111110 0011111111111111 1122222332222221 1 Q ss_pred cCCcccCCCc-------cccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC----CCceEEEEEccceEEEE Q lcl|Aclame:pro 73 PNGITVGGSA-------DSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD----DGTATITADSPETMVVS 141 (456) Q Consensus 73 g~~~~~~~~~-------d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~----~g~~~i~~~~p~~~~~i 141 (456) .+||.+.-+. .+....++..++.--+|+....+..+...+.|+-|.|.-.|. +|-..++.++|+.+-.+ T Consensus 86 ~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~ELr~lDPr~i~~v 165 (533) T protein:vir:10 86 DVPVSVELSNLKVSDKIKKLIREEFGEILRLLDFENRSYEIFRRWYVDGRLFYHKVIDPDNPQGGLIELRYIDPRKIRKI 165 (533) T ss_pred CceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCCCccccceeeeeccccceeee Confidence 2344432211 122344566666667889999999999999999999976553 46677899999998877 Q ss_pred eeCC--CCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEec Q lcl|Aclame:pro 142 VDPL--QPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQ 219 (456) Q Consensus 142 ~d~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~ 219 (456) .--. +...... +..-.........+.+|.+..... ...+...++... +...|.++ +..+ T Consensus 166 r~i~~~~~~~~~~-~~~~~~v~~~~~eyf~Ynp~g~~~--------~~~~~vkI~~dA-----I~y~hSGl-----~d~~ 226 (533) T protein:vir:10 166 NETEQKRPEQLRG-LPLNQQLSPKSAEYFLYDPKGLKN--------STTQGLKIAPDS-----ICYVHSGI-----MDLN 226 (533) T ss_pred eeeeccCCCccce-eecchhhhccceeeeeeccccccc--------cCCCceecchhh-----eeeeeccc-----eeCC Confidence 5321 1111110 000011122233345565543321 011111111000 00111111 1111 Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhhhhhhhhccce---------- Q lcl|Aclame:pro 220 NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYASIFEAAPGAL---------- 288 (456) Q Consensus 220 n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~~~~~~~~~~~---------- 288 (456) +..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... =+ ........+++ T Consensus 227 ~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeq-Yl--r~iM~k~KNklVYDa~TGev~ 302 (533) T protein:vir:10 227 KNMTLSHLHKAIKAVNQL-RMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQ-YL--REVMGRYRNKLVYDANTGEIK 302 (533) T ss_pred CCceeccchHhHHHHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--HHHHHhccceEEEeccCceec Confidence 111223343332222221 12222222222222222221100000 00000000 00 00000011111 Q ss_pred ------------eec----CCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc-cc-hHHHHHHHHHHHH Q lcl|Aclame:pro 289 ------------WEL----PPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQ-SAEGAHNIEKGFL 350 (456) Q Consensus 289 ------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~-Sg~Al~~~~~~l~ 350 (456) |.- ..+..+..++...--+-++-++-+.+.++...++|..-+...++ |. -|..|---+..+. T Consensus 303 ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~DV~YF~kKLY~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~ 382 (533) T protein:vir:10 303 DDKKFMSMLEDFWLPRREGGRGTEITTLPGGQNLGELEDVKYFQKKLYKSLNVPGSRLETETTFNVGRAAEITRDEVKFQ 382 (533) T ss_pred ccchhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHH Confidence 110 11222233333221122334555566788888999888765432 22 2345666666777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHH-------HHHHHH--hcCCCcHH Q lcl|Aclame:pro 351 FKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYS-------AASLAK--AAGESWAS 414 (456) Q Consensus 351 ~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad-------~~~kl~--~~g~~s~~ 414 (456) .-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++ ++..+. -+..+|.+ T Consensus 383 KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~d 462 (533) T protein:vir:10 383 KFVARLRKRFSELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVE 462 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchH Confidence 78889999999999999887666666421 135778886654444333333 222221 11246999 Q ss_pred HHHH-hCCCCccHHHHHHHHHHHHHHHH---------HhhcccccccCCCCC Q lcl|Aclame:pro 415 IRRN-ILNYNADQIKQDDLDRAREQITL---------FAGNPVQRPQEDGSR 456 (456) Q Consensus 415 t~~~-~~~~~~~~~~~~e~~~~~e~~~~---------~~~~~~~~~~~~Gs~ 456 (456) ++++ .|.+++++++++..+.++|.-.. .....+.+|..+|+- T Consensus 463 yi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~ 514 (533) T protein:vir:10 463 YMRRQVLKQTDVEMKEIDKQIESEMESGIIADPAAEMDPAMAAGDPDAGGAP 514 (533) T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCCcchhhHHhcCCCCCcCCcc Confidence 8865 78999998887765544443221 112233455666665 No 226 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=97.61 E-value=3.8e-05 Score=44.82 Aligned_cols=433 Identities=10% Similarity=0.003 Sum_probs=172.2 Q ss_pred CCCCCH----HHHHHHHHHHHHHHH----HHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTP----AEWLPVLTKRIDDGM----SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~----~~~~~~l~~~~~~~~----~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |+. +. .+-++...+++..++ .+.+.+.+|..-.- ....... -.....++..+-+...++.+++.|. T Consensus 1 m~~-~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~---~~~~~~~--~~~~~~~~~dst~~~a~~~Laa~l~ 74 (536) T protein:vir:10 1 MAE-KRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSL---FPKDSDN--ASTDYQTPWQAVGARGLNNLASKLM 74 (536) T ss_pred Ccc-hhhchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc---cCCCCCc--ccccccccccccHHHHHHHHHHHHH Confidence 765 22 334444444444433 34444555533211 1111111 1112223555666777777777776 Q ss_pred cC-----C-cccCCCc-c-------cc-----------HHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc Q lcl|Aclame:pro 73 PN-----G-ITVGGSA-D-------SD-----------LALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT 127 (456) Q Consensus 73 g~-----~-~~~~~~~-d-------~~-----------~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~ 127 (456) +- | |++...+ + .. ....+...+..++|.....++.++...+|.|-+++-.+.++. T Consensus 75 ~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~e~~~~~ 154 (536) T protein:vir:10 75 LALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLPEPEGSN 154 (536) T ss_pred hhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEeeCCCCc Confidence 42 1 2222111 0 00 112344556677899999999999999999987765444433 Q ss_pred e-EEEEEccceEEEEeeCCCCceeEEEEEEEEec-------CC-----ceeEEEEEeCCeEEEEEEcccccccccceeec Q lcl|Aclame:pro 128 A-TITADSPETMVVSVDPLQPWRIRAAMRWWRDL-------DA-----ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVT 194 (456) Q Consensus 128 ~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (456) + .++.++-.++.+..| ..+ ++..++|.++-. .+ .......+..-.+++.+..... ...+.... T Consensus 155 ~~~~~~~pl~~~~v~~d-~~G-~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~V~~~~~--~~~~~~~~ 230 (536) T protein:vir:10 155 YNPMKLYRLSSYVVQRD-AFG-NVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDEA--SGEYLRYE 230 (536) T ss_pred eeeEEEEEcCeEEEeeC-CCC-CeeEEeeeeeccHHHHHHhhhhhhcccccccCcccceEEEEEEEEecC--CCcEEEEE Confidence 3 467777666666555 333 455555544311 00 0000111111223322211100 00011111 Q ss_pred cCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccc Q lcl|Aclame:pro 195 RISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNV 268 (456) Q Consensus 195 ~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~ 268 (456) ...+...........+.-+|++.+ .+..|.|-.+..++-+..++...-...........+...+ T Consensus 231 e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv---------- 300 (536) T protein:vir:10 231 EVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISSKVIGLV---------- 300 (536) T ss_pred eecCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------- Confidence 112211111112222333444332 2457899888899988888877655555555544433222 Q ss_pred ccchhhhhhhhhhhhhccceeecCCC-cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhc-cccccchHHHHHHH Q lcl|Aclame:pro 269 DENGNAIDYASIFEAAPGALWELPPG-VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLM-PDSANQSAEGAHNI 345 (456) Q Consensus 269 d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~-~~~~n~Sg~Al~~~ 345 (456) +.+|- ...........|.+....++ ....++. ..+...-...++.+...|....-+. .+. .++...++.-++.. T Consensus 301 ~p~g~-~~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~--~l~~~~~~r~TAtEV~~r 377 (536) T protein:vir:10 301 NPAGI-TQPRRLTKAQTGDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLN--SAVQRTGERVTAEEIRYV 377 (536) T ss_pred Ccccc-cchhhhccCCCcceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhh--hcccCCCCCccHHHHHHH Confidence 11110 01111223334444332222 1122222 2333333333333333332211110 111 22334577666655 Q ss_pred HHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhcCC--CccccceEEecCCC-CCCHHHHHHHHHHHHh--cCC----- Q lcl|Aclame:pro 346 EKGFLFKCED----RL-SIAKIGLEAILVKALQIEGE--SVEDTVDVSFESPD-RVTLGEKYSAASLAKA--AGE----- 410 (456) Q Consensus 346 ~~~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g~--~~~~~i~v~f~~~~-~~~~~e~ad~~~kl~~--~g~----- 410 (456) ...+.+...- .+ ..+.+-+.+++.++.+-.-. .....+++.+.-++ +-...+.++.+....+ +++ T Consensus 378 ~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la~~~P~~l 457 (536) T protein:vir:10 378 ASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPMRD 457 (536) T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHHhhchhhh Confidence 5555443322 22 22233344445554332111 12223455554332 1111222222221111 121 Q ss_pred ---CcHHH----HHHhCCCCc-------cHHHHHHHHHHHHHH-HHHhhc---------------ccccccCCCCC Q lcl|Aclame:pro 411 ---SWASI----RRNILNYNA-------DQIKQDDLDRAREQI-TLFAGN---------------PVQRPQEDGSR 456 (456) Q Consensus 411 ---~s~~t----~~~~~~~~~-------~~~~~~e~~~~~e~~-~~~~~~---------------~~~~~~~~Gs~ 456 (456) +.-.. ....+|+++ ++++++.+++.+.+. .+.+.. ..+.++..|.+ T Consensus 458 d~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 533 (536) T protein:vir:10 458 DPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPEAMAAAADSVGLQ 533 (536) T ss_pred cccCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhccccC Confidence 11111 123467643 344444333322211 111110 11122222333 No 227 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=97.52 E-value=5.1e-05 Score=44.12 Aligned_cols=433 Identities=10% Similarity=0.010 Sum_probs=172.4 Q ss_pred CCCCCH----HHHHHHHHHHHHHHH----HHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTASTP----AEWLPVLTKRIDDGM----SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t~----~~~~~~l~~~~~~~~----~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |+. +. .+-++...+++..++ .+.+.+.+|..-.- ...... .-.....++..+-+...++.+++.|. T Consensus 1 m~~-~~~~~~~~~~~~r~~~lk~~R~~~e~~w~e~~~~~lP~~---~~~~~~--~~~~~~~~~~dst~~~a~~~Laa~l~ 74 (536) T protein:vir:21 1 MAE-KRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSL---FPKDSD--NASTDYQTPWQAVGARGLNNLASKLM 74 (536) T ss_pred Ccc-hhhchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc---cCCCCC--cccccccccccccHHHHHHHHHHHHH Confidence 765 22 334444444444433 33444555533211 111111 11112234555666777777777776 Q ss_pred cC-----C-cccCCCc-c-------cc-----------HHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc Q lcl|Aclame:pro 73 PN-----G-ITVGGSA-D-------SD-----------LALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT 127 (456) Q Consensus 73 g~-----~-~~~~~~~-d-------~~-----------~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~ 127 (456) +- | |++...+ + .. ....+...+..++|.....++.++...+|.|-+++-.+.++. T Consensus 75 ~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~e~~~~~ 154 (536) T protein:vir:21 75 LALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLPEPEGSN 154 (536) T ss_pred HhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEeeCCCCc Confidence 42 1 2222111 0 00 112344556677899999999999999999987765444433 Q ss_pred e-EEEEEccceEEEEeeCCCCceeEEEEEEEEec-------CC-----ceeEEEEEeCCeEEEEEEcccccccccceeec Q lcl|Aclame:pro 128 A-TITADSPETMVVSVDPLQPWRIRAAMRWWRDL-------DA-----ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVT 194 (456) Q Consensus 128 ~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~-------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (456) + .++.++-.++.+..| ..+ ++..++|.++-. .+ .......+..-.+++.+.... ....+.... T Consensus 155 ~~~f~~~pl~~~~v~~d-~~G-~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~v~~~~--~~~~~~~~~ 230 (536) T protein:vir:21 155 YNPMKLYRLSSYVVQRD-AFG-NVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHIYLDE--DSGEYLRYE 230 (536) T ss_pred eeeEEEEEcCeEEEeeC-CCC-CeeEEeeeeeccHHHHHHhhhhhhcccccccccccceeEEEEEEEec--CCCcEEEEe Confidence 3 467777666666555 333 455555544311 00 000011111122232221110 000011111 Q ss_pred cCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccc Q lcl|Aclame:pro 195 RISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNV 268 (456) Q Consensus 195 ~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~ 268 (456) ...+...........+.-+|++.+ .+..|.|-.+..++-+..++...-...........+...+ T Consensus 231 e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv---------- 300 (536) T protein:vir:21 231 EVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMISSKVIGLV---------- 300 (536) T ss_pred ccCCeeeccccCccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------- Confidence 112221111122222344444332 2457899888999988888877655555555544433222 Q ss_pred ccchhhhhhhhhhhhhccceeecCCC-cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhc-cccccchHHHHHHH Q lcl|Aclame:pro 269 DENGNAIDYASIFEAAPGALWELPPG-VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLM-PDSANQSAEGAHNI 345 (456) Q Consensus 269 d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~-~~~~n~Sg~Al~~~ 345 (456) +.+|- ...........|.+....++ ....++. ..++..-...++.+...|....-+. .+. .+....++.-++.. T Consensus 301 ~p~g~-~~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~--~l~~~~~~r~TAtEV~~r 377 (536) T protein:vir:21 301 NPAGI-TQPRRLTKAQTGDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLN--SAVQRTGERVTAEEIRYV 377 (536) T ss_pred Ccccc-cchhhhccCCCcceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhh--hcccCCCCCccHHHHHHH Confidence 11110 01111223334444332222 1122222 2333332333333333332211110 111 22334577666655 Q ss_pred HHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhcCC--CccccceEEecCCC-CCCHHHHHHHHHHHHh--cCC----- Q lcl|Aclame:pro 346 EKGFLFKCED----RL-SIAKIGLEAILVKALQIEGE--SVEDTVDVSFESPD-RVTLGEKYSAASLAKA--AGE----- 410 (456) Q Consensus 346 ~~~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g~--~~~~~i~v~f~~~~-~~~~~e~ad~~~kl~~--~g~----- 410 (456) ...+.+...- .+ ..+.+-+.+++.++.+-.-. .....+++.+.-++ +-...+.++.+....+ +++ T Consensus 378 ~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la~~~Pe~l 457 (536) T protein:vir:21 378 ASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWAALAPMRD 457 (536) T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHHhhchhhh Confidence 5555443322 22 22233344445554332111 12223455554332 1111222222221111 111 Q ss_pred ---CcHHH----HHHhCCCCc-------cHHHHHHHHHHHHHH-----HH----Hhhc-------ccccccCCCCC Q lcl|Aclame:pro 411 ---SWASI----RRNILNYNA-------DQIKQDDLDRAREQI-----TL----FAGN-------PVQRPQEDGSR 456 (456) Q Consensus 411 ---~s~~t----~~~~~~~~~-------~~~~~~e~~~~~e~~-----~~----~~~~-------~~~~~~~~Gs~ 456 (456) +.-.. +...+|+++ ++++++.+++.+.+. .+ ++.. ..+.++..|.+ T Consensus 458 d~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 533 (536) T protein:vir:21 458 DPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPEAMAAAADSVGLQ 533 (536) T ss_pred cccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHhhhhccccC Confidence 11111 123457643 344444333322211 11 1100 11122222333 No 228 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=97.45 E-value=6.6e-05 Score=43.52 Aligned_cols=392 Identities=9% Similarity=-0.037 Sum_probs=156.5 Q ss_pred HHHHHHHHHHHHHH----HHHHHH--------------------HHHHhhccCcccccCcccchhhhhhh--hhhcCChH Q lcl|Aclame:pro 7 AEWLPVLTKRIDDG----MSRVRL--------------------LARYSNGDAPLPELTRNTSAAWRSFQ--REARTNWG 60 (456) Q Consensus 7 ~~~~~~l~~~~~~~----~~~~~~--------------------~~~YY~g~~~i~~~~~~~~~~~~~~~--~k~~~n~~ 60 (456) +-|+.+|....... .+.+.. +..+..|... ...+....... .-+.+... T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~g~~v~~~~a~~~~~v 75 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPST-----ELAPDTFVGLATQAYQANGPV 75 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccc-----cccCccccccchhhhhccHHH Confidence 55677766554221 111111 0111111100 00000111110 01234566 Q ss_pred HHHHHHHHHhhhcCCcccCCCcccc----HHHHHHHHHHh-c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCc----- Q lcl|Aclame:pro 61 LMVRDSVADRIIPNGITVGGSADSD----LALRARRIWRD-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGT----- 127 (456) Q Consensus 61 ~~iVd~~~~~l~g~~~~~~~~~d~~----~~~~l~~~~~~-n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~----- 127 (456) ..+|+..++-+..-|+.+....+.. ....+..++.+ | .-..+...++.+++.+|.||+++..++.|. T Consensus 76 ~~~i~~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~ 155 (466) T protein:vir:81 76 FACMLVRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDW 155 (466) T ss_pred HHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCcccccccc Confidence 7888888888888888764222211 11123334433 2 234456778889999999999998876653 Q ss_pred ----eEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCce--eEEEEEeCCeEEEEEEcccccccccceeeccCCCccc Q lcl|Aclame:pro 128 ----ATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAES--DFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWV 201 (456) Q Consensus 128 ----~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (456) ..+..++|..+.+..+......+. |+....+.. .....|..+.+.|+... T Consensus 156 ~g~~~~l~~l~~~~v~~~~~~~~~~~~~----y~~~~~~~~~~~~~~~~~~~dviHir~~-------------------- 211 (466) T protein:vir:81 156 VDVVVEERMVRGGRGELGGGQLGWRKVG----YLYTEGGRQSGNESVGFLAEDVVHFAPI-------------------- 211 (466) T ss_pred CcceeEEEEecCcceEEEEcCCCceEEE----EEEEecCcccccceeeeccccEEEEcCC-------------------- Confidence 235666666666665432211111 111111100 00111222222222100 Q ss_pred ccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhh Q lcl|Aclame:pro 202 PVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYA 278 (456) Q Consensus 202 ~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~ 278 (456) .+ |. .--.|.|-+......++..... ......+|.+ |.-++.- .. ...++.-+.+... T Consensus 212 -----~~-----~~---d~~~G~s~i~~~~~~i~~~~a~---~~~~~~~f~ng~~p~gil~~-~~--~l~~e~~~~~~~~ 272 (466) T protein:vir:81 212 -----PD-----PL---ASYRGMSWLTPILREIRADQAM---SKHQAKFFDNGATVNLVIKH-NP--MADPAAVKKWADE 272 (466) T ss_pred -----CC-----cc---cccccccHHHHHHHHHHHHHHH---HHHHHHHHhcCCCcceEEec-CC--CCCHHHHHHHHHH Confidence 00 00 0012556554443333322222 1222233333 3223321 10 0111111121110 Q ss_pred --hhhh--hhccceeecCCCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhcccc--ccchHHHHHHHHHHHHH Q lcl|Aclame:pro 279 --SIFE--AAPGALWELPPGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDS--ANQSAEGAHNIEKGFLF 351 (456) Q Consensus 279 --~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~--~n~Sg~Al~~~~~~l~~ 351 (456) .... ...+++..++.+.++..+...+. ..|++..+..+.+|+..-++|++.+|... +..++..++.....+.. T Consensus 273 ~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~ 352 (466) T protein:vir:81 273 VNSKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLAD 352 (466) T ss_pred HHHHhcCccccccceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHH Confidence 1111 12245677888888877654332 34778888889999999999999997432 12233223322222222 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCC--CCCCHHHHHHH-------HHHHHhcCCCcHHHHHHhCC Q lcl|Aclame:pro 352 KC-EDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESP--DRVTLGEKYSA-------ASLAKAAGESWASIRRNILN 421 (456) Q Consensus 352 k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~--~~~~~~e~ad~-------~~kl~~~g~~s~~t~~~~~~ 421 (456) .| .-+.+.+...+.+.+ ..........+.|... +-.+..+.+++ +.+++++|+ +...++.... T Consensus 353 ~tl~P~~~~ie~~l~~~L------~~~~~~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g~-t~nE~r~~~~ 425 (466) T protein:vir:81 353 GTAHPLWQNLSGCIGHVM------PDMGPDVRLWYDADDVPFLREDEKDAADIQKVRAETINTLITAGY-EPESVVAAVN 425 (466) T ss_pred HHHHHHHHHHHHHHHhhc------CCcccCcceEEEecchhhhccCHHHHHHHHHHHHHHHHHHHHcCC-Chhhcccccc Confidence 21 112222333332221 1111222344555433 23444444443 455666775 4333343221 Q ss_pred CCccHH-H--HH-HHHHHHHHHHHHhhccccc-----ccCCCC Q lcl|Aclame:pro 422 YNADQI-K--QD-DLDRAREQITLFAGNPVQR-----PQEDGS 455 (456) Q Consensus 422 ~~~~~~-~--~~-e~~~~~e~~~~~~~~~~~~-----~~~~Gs 455 (456) .-+... . -+ -++.... ........+. .+++|. T Consensus 426 ~gd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Gg~~ngn 466 (466) T protein:vir:81 426 SGDLRLLKHTGLTSVQLLPP--GVSASASSDTPTSGGADDNGN 466 (466) T ss_pred CCccccccCCCcchhhhccc--ccccccCCCCcccCCCCcCCC Confidence 110000 0 00 0000000 0000111111 123333 No 229 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=97.41 E-value=7.4e-05 Score=43.22 Aligned_cols=425 Identities=8% Similarity=-0.041 Sum_probs=183.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCc----ccc--hhhhhhhhhhcCChHHHHHHHHHHhhhcC--- Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTR----NTS--AAWRSFQREARTNWGLMVRDSVADRIIPN--- 74 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~----~~~--~~~~~~~~k~~~n~~~~iVd~~~~~l~g~--- 74 (456) ++...+.+++-.-...+.+....+++||+--- +.+.. ... ....+.+.++..+-+...++++++.|.+- T Consensus 1 ~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~l--P~~~~~~~~~~~~~~~~~~~~~~i~dst~~~a~~~Las~L~~~ltP 78 (547) T protein:vir:10 1 MENSKIVKRLDFLKTDRKNVEQIWDCIRKYIM--PMRSDFFSDLRSEGSINWNQNREVFDSTAGDGLETLSSSLHGSLTS 78 (547) T ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ccccccccCCCCCcccccccccccccchHHHHHHHHHHHHHHhhcC Confidence 77777766655444444333333333433221 11110 000 11123344566777888888888887643 Q ss_pred ---C-cccCCCcc-----ccHH-------HHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC--CCceEEEEEccc Q lcl|Aclame:pro 75 ---G-ITVGGSAD-----SDLA-------LRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD--DGTATITADSPE 136 (456) Q Consensus 75 ---~-~~~~~~~d-----~~~~-------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~--~g~~~i~~~~p~ 136 (456) | |++...+. .+.. ..+...+..++|.....++.++..++|.|-+++-.+. .+.++++.++.. T Consensus 79 p~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~d~~~~~~~r~~~~pl~ 158 (547) T protein:vir:10 79 PATKWFELAFRDKELNSDDECRKWLENATHDVYSALQDSNFNLEANETYIDLCGYGNAIMVEEEDEDEEGSVVFQSSPIQ 158 (547) T ss_pred CCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEeccCCCCCCceeEEEeecc Confidence 2 23322111 1111 1234455667888889999999999999988776553 356788999888 Q ss_pred eEEEEeeCCCCceeEEEEEEEEec-------CC----------------c--eeEEEEEeCCeEEEEEEcccccccc--- Q lcl|Aclame:pro 137 TMVVSVDPLQPWRIRAAMRWWRDL-------DA----------------E--SDFAIVWSGDGWQKFARPCFVQSSS--- 188 (456) Q Consensus 137 ~~~~i~d~~~~~~~~~~i~~~~~~-------~~----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~--- 188 (456) ++++.-|+. + ++..++|.++-. .+ . ....++ ++.+......... T Consensus 159 ~~~v~~d~~-G-~v~~i~r~~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~v------~~~v~~~~~~~~~~~~ 230 (547) T protein:vir:10 159 DSYFEEDSR-G-QVVNFYRVFRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQEV------VMCVFTRYDKKQNRNA 230 (547) T ss_pred eEEEeeCCC-c-CeeeeeeeeeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEEE------EEEEeeccCCCCCccc Confidence 888877643 3 445555443210 00 0 001111 1111110000000 Q ss_pred -----------cceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 189 -----------RRRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQ 251 (456) Q Consensus 189 -----------~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~ 251 (456) .....+ ..+.... .. +..+.-+|++.+ .+..|.|-.+..++.+..+|...-..+..++.. T Consensus 231 ~~~~~~~~~p~~s~~~e-~~~~~~~-l~-esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~ 307 (547) T protein:vir:10 231 GTVLAPTERPFGKKWIL-KEGAVQL-GE-EGGYYEMPAYAIRWRKSAGSQWGFGPSHLALPDVLTANRYVELVLRSSEKV 307 (547) T ss_pred cceeeccccceeEEEEE-ecCceee-ee-cCCcccCCeeeeeeeecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 000000 1111110 11 111222333322 245789988999999999998888888888888 Q ss_pred hhhHHhhcCCCccccccccchhhhhhhhhhhhhccceeecCCCcceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhh Q lcl|Aclame:pro 252 AFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPML 330 (456) Q Consensus 252 ~~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~ 330 (456) ..|.+.+.- .+ ..++ +...+|.+...+....+.-+. ..+...-...++.+...|...--..... T Consensus 308 ~~pp~~v~~--~g------~~~~------~~~~pgg~~~~~~~~~v~pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~- 372 (547) T protein:vir:10 308 IDPAIMVTE--RG------LISD------IDLGASGLTVVRDMESMKPFESRARFDVSSIQLTDLRSAVRRIYYVDQLQ- 372 (547) T ss_pred hcCceeccc--cc------cccc------ceecCCeeeecCCcccceeeecccchHHHHHHHHHHHHHHHHHhhhhhhh- Confidence 877654321 00 0011 122334333322222222121 1233322233333333333211111100 Q ss_pred ccccccchHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhcCCC---------ccccceEEecCCCCCCHH Q lcl|Aclame:pro 331 MPDSANQSAEGAHNIEKGFLFKCED----RL-SIAKIGLEAILVKALQIEGES---------VEDTVDVSFESPDRVTLG 396 (456) Q Consensus 331 ~~~~~n~Sg~Al~~~~~~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g~~---------~~~~i~v~f~~~~~~~~~ 396 (456) -.+....++.-++.....+.....- .+ ..+.+-+.+.+.++.+..-.+ ....++|++..++.+.-. T Consensus 373 ~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~~~~~~v~~is~Laraq~ 452 (547) T protein:vir:10 373 MKDSPAMTATEVQVRYELMQRLLGPTLGRLENDFLSPMIQRTFNIRFRAGKLGELPSKLLESGKAAMDIVYTGPLSRAQK 452 (547) T ss_pred cCCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccCcceEEEEeccHHHHHHH Confidence 1122345666665554444443322 22 233344556666554422111 123466777666543311 Q ss_pred --------HHHHHHHHHHhcC-----CCcHHH----HHHhCCCC------ccHHHHHHHHHHHHHHH--------HHhhc Q lcl|Aclame:pro 397 --------EKYSAASLAKAAG-----ESWASI----RRNILNYN------ADQIKQDDLDRAREQIT--------LFAGN 445 (456) Q Consensus 397 --------e~ad~~~kl~~~g-----~~s~~t----~~~~~~~~------~~~~~~~e~~~~~e~~~--------~~~~~ 445 (456) +.++.+..+.+.+ .+.-.. ....+|.. +++++++.++|++.+-. +.+.. T Consensus 453 ~~~~~~i~~~~~~v~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~~~qaa~~~~~g~~ 532 (547) T protein:vir:10 453 IDQAASIERWAGSTAQLAEINPEVLDIPDWDEMVRMLGSLLGAPQTLMRPKAKVTSIRKNRSQTQQKAEQAAIAEAEGNA 532 (547) T ss_pred HHHHHHHHHHHHHHHHhhccChhhhhcCCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1112222221111 111111 22345653 23444444443221111 11111 Q ss_pred ccccccCCCC-C Q lcl|Aclame:pro 446 PVQRPQEDGS-R 456 (456) Q Consensus 446 ~~~~~~~~Gs-~ 456 (456) .+..+.++-| | T Consensus 533 m~~~~~~~a~~~ 544 (547) T protein:vir:10 533 MEAQGKGQAALK 544 (547) T ss_pred HHhhcCcccchh Confidence 1222222222 2 No 230 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=97.27 E-value=0.00011 Score=42.28 Aligned_cols=425 Identities=11% Similarity=0.022 Sum_probs=166.6 Q ss_pred CCCCCHHH-----HHHHHHHHHHHH----HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhh Q lcl|Aclame:pro 1 MTASTPAE-----WLPVLTKRIDDG----MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRI 71 (456) Q Consensus 1 ~~~~t~~~-----~~~~l~~~~~~~----~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l 71 (456) |++.|..+ -++...+.+..+ ..+++.+.+|..-.- ........ +....++..+-+...++.+++.| T Consensus 1 ~~~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~~---~~~~~~~~--~~~~~~~~dst~~~a~~~Laa~l 75 (535) T protein:vir:94 1 MASSQKREGFAENGAKAVYDALKNDRNSYETRAENCAKYTIPSL---FPKDSDNA--STDYTTPWQAVGARGLNNLASKL 75 (535) T ss_pred CCchhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc---CCCCCCcc--ccccCCcccccHHHHHHHHHHHH Confidence 88777644 222223333333 233344445532210 00001000 11122344556666777777776 Q ss_pred hcC-----C-cccCCCc--------cccHHH-----------HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCC Q lcl|Aclame:pro 72 IPN-----G-ITVGGSA--------DSDLAL-----------RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDG 126 (456) Q Consensus 72 ~g~-----~-~~~~~~~--------d~~~~~-----------~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g 126 (456) .+- + |++...+ +..... .+...+..++|.....++.++...+|.|-+++-.+.+. T Consensus 76 ~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~ 155 (535) T protein:vir:94 76 MLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGNALLYIPEPEGT 155 (535) T ss_pred HhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeccCcCc Confidence 542 1 2322111 001111 12334566889999999999999999997777555444 Q ss_pred ceEEEEEccceEEEEeeCCCCceeEEEEEEEEec-----------------CCceeEEEEEeCCeEEEEEEcccccccc- Q lcl|Aclame:pro 127 TATITADSPETMVVSVDPLQPWRIRAAMRWWRDL-----------------DAESDFAIVWSGDGWQKFARPCFVQSSS- 188 (456) Q Consensus 127 ~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 188 (456) ..+++.++-.+..+.-| ..+ ++..++|.++-. ......+.+|+ .+.. .... T Consensus 156 ~~~f~~~pl~~y~v~~d-~~G-~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~------~v~~---~~~~~ 224 (535) T protein:vir:94 156 YNPMKLYRLSSYVVQRD-AFG-TVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYT------HIYL---DEESG 224 (535) T ss_pred ccceEEEEcCeEEEeeC-CCC-CeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEE------EEEe---eCCCC Confidence 45677776666444444 344 454544443311 00111222232 1100 0000 Q ss_pred cceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC Q lcl|Aclame:pro 189 RRRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTE 262 (456) Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~ 262 (456) .+..+....+........+.++.-+|++.+ .+..|.|-.+..++-+..++...-......+....+...+ T Consensus 225 ~~~~~~e~~g~~~~~~~~~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv---- 300 (535) T protein:vir:94 225 EYLKYEEIDGVEVEGTDASYPVDACPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLV---- 300 (535) T ss_pred cEEEEEEecCeeeccccccCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc---- Confidence 011111111211111112223333444332 2457889888888888888876555555545444433222 Q ss_pred ccccccccchhhhhhhhhhhhhccceeecCCC-cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhc-cccccchH Q lcl|Aclame:pro 263 HGLPNVDENGNAIDYASIFEAAPGALWELPPG-VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLM-PDSANQSA 339 (456) Q Consensus 263 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~-~~~~n~Sg 339 (456) +.+|.. ..........|.+....++ ....++. .++++.-...++.+...|....- - ..+. .+....++ T Consensus 301 ------~p~g~~-~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~-~-~~~~~~d~~rvTA 371 (535) T protein:vir:94 301 ------NPAGIT-QVRRLTKAQTGDFVSGRPEDISFLQLEKAADFSVARAVSEQIEGRLSYAFM-L-NSAVQRTGERVTA 371 (535) T ss_pred ------cccccc-chhhcccCCCceeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHh-H-hhhccCCCCCccH Confidence 111110 1111122333444333222 2222232 23444434444444444432221 1 1111 23334566 Q ss_pred HHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhcCC--CccccceEEecCCCCCCHHHHHHHHHHH---Hh-- Q lcl|Aclame:pro 340 EGAHNIEKGFLFKCED----RL-SIAKIGLEAILVKALQIEGE--SVEDTVDVSFESPDRVTLGEKYSAASLA---KA-- 407 (456) Q Consensus 340 ~Al~~~~~~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g~--~~~~~i~v~f~~~~~~~~~e~ad~~~kl---~~-- 407 (456) .-++.....+.....- .+ ..+.+-+.+++.++.+-.-. .....+++.+..++ ..++.++.+.++ .+ T Consensus 372 tEV~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l--a~l~r~~~~~~l~~~~~~l 449 (535) T protein:vir:94 372 EEIRYVASELEDTLGGVYSILSQELQLPMVRVLLKQLQATNQIPELPKEAVEPTISTGM--EALGRGQDLDKLERCIAAW 449 (535) T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEeehH--HHHHHHHHHHHHHHHHHHH Confidence 6555544444333322 11 22333344555554432111 12223455553332 112222222111 11 Q ss_pred cCC--------CcHHH----HHHhCCCC-------ccHHHHHHHHHHHHHHHHHh-hcccccccCCCCC Q lcl|Aclame:pro 408 AGE--------SWASI----RRNILNYN-------ADQIKQDDLDRAREQITLFA-GNPVQRPQEDGSR 456 (456) Q Consensus 408 ~g~--------~s~~t----~~~~~~~~-------~~~~~~~e~~~~~e~~~~~~-~~~~~~~~~~Gs~ 456 (456) +++ +.-.. ....+|.. +++++.+.+++++.+..+.+ ...++..+..++. T Consensus 450 aq~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~eev~~~~~q~~~~~~~~~~~~~~g~~~~~~~~~ 518 (535) T protein:vir:94 450 SALAPMQGDPDINIATIKLRIANAIGIDTSGILKTPEEKQQEMAEAAQGTAMQNAAASAGAGAGTMATA 518 (535) T ss_pred HhhChHHhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc Confidence 111 11111 11234543 23333333333222211111 1111111111111 No 231 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=97.25 E-value=0.00012 Score=42.14 Aligned_cols=358 Identities=12% Similarity=0.041 Sum_probs=150.1 Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhhccCcccccCccc-chh-----------------------hhhhhh--hhcC Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRV---RLLARYSNGDAPLPELTRNT-SAA-----------------------WRSFQR--EART 57 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~---~~~~~YY~g~~~i~~~~~~~-~~~-----------------------~~~~~~--k~~~ 57 (456) +-+...|.-. ...+++ .-.-+|.-|+.++....... +.+ ...... -+.+ T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~ 78 (409) T protein:vir:83 1 MGFWSNLFGI--PSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLI 78 (409) T ss_pred Cchhhhhccc--ccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhh Confidence 0000000000 000000 00122233322221110000 000 000000 0112 Q ss_pred ChHHHHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHh--cCh---hHHHHHHHHHHhhCCeeEEE-EEeCCCCce-EE Q lcl|Aclame:pro 58 NWGLMVRDSVADRIIPNGITVGGSADSDLALRARRIWRD--NRM---DSVCKQWVKYGLDFGESYLT-CWRRDDGTA-TI 130 (456) Q Consensus 58 n~~~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~--n~~---~~~~~~~~~~~~~~G~a~~~-v~~~~~g~~-~i 130 (456) .....+|+..++-+-.-|+.+..... ..+.+..++.. |.. ..+...++...+ .|.+|++ +..+.+|.+ .+ T Consensus 79 ~~v~acV~~Ia~~iA~lpl~~~~~~~--~~~~~~~ll~~~PN~~~t~~~f~~~l~~~ll-lGnay~~~i~r~~~G~~~~L 155 (409) T protein:vir:83 79 DVAWACIDLNASVLSSMPIYRMRNGR--IIDSVAWMSNPDPEVYTSWQEFAKQLFWDFQ-LGEAFVLPMAHGSDGYPIRF 155 (409) T ss_pred HHHHHHHHHHHHhhccCceEEeeCCc--cccchhhhcccCCCCCCCHHHHHHHHHHHHh-hCCcEEEEEEECCCCcEEEE Confidence 34456788888877777876532111 11112222221 211 222333444444 4889976 557888876 47 Q ss_pred EEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccC Q lcl|Aclame:pro 131 TADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTG 210 (456) Q Consensus 131 ~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (456) .+++|..+.+..++... .+|+... .+.++.+.|+. T Consensus 156 ~pl~p~~v~v~~~~~g~-------~~y~~~~-------~~~~~eiiHir------------------------------- 190 (409) T protein:vir:83 156 RVVPPWLVNVELKKGAR-------REYRIGG-------LNVTDEILHIR------------------------------- 190 (409) T ss_pred EEECCcceEEEEcCCce-------EEEEEcc-------ccCccceEEeC------------------------------- Confidence 88888887766653310 1111100 01111111110 Q ss_pred ceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhhcCCCccccccccchhhhhhh--hhhhhhc Q lcl|Aclame:pro 211 SPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRALKSTEHGLPNVDENGNAIDYA--SIFEAAP 285 (456) Q Consensus 211 ~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~g~~~~~~--~~~~~~~ 285 (456) ...| ...-.|.|-++.....++..+.... ....+|.+ |.-+++-.. ...++.-..+... ....... T Consensus 191 ~~~~---~~~~~G~spi~~~~~~i~~~~a~~~---~~~~~f~nga~p~gil~~~~---~ls~e~~~~~~~~~~~~~~~na 261 (409) T protein:vir:83 191 YQGN---TADAHGHGPLESAAPRQVVIGLLQK---YVQNLAETGGVPLYWLGVER---RLSETEAVDLMDRWIESRSKYA 261 (409) T ss_pred CCCC---CCCcccccHHHHHHHHHHHHHHHHH---HHHHHHhcCCCcceEeecCC---CCCHHHHHHHHHHHHHhhCCcc Confidence 0000 0001256656555444443332211 12233332 332332110 1111111111110 0111123 Q ss_pred cceeecCCCcceee---ccccchHHHHHHHHHHHHHHHhhcCCChhhhcccc-------ccchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 286 GALWELPPGVDIWE---SQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-------ANQSAEGAHNIEKGFLFKCED 355 (456) Q Consensus 286 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-------~n~Sg~Al~~~~~~l~~k~~~ 355 (456) |+.+.+.++.++.+ +++.++ .|++..+....+||.+-++|++.+|... +|.....+.+....|.-.+.. T Consensus 262 g~~~il~~g~~~~~~~~~s~~d~-q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ 340 (409) T protein:vir:83 262 GHPALVTGGATLNQAKSMSAQDL-SLMELTQFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATA 340 (409) T ss_pred CccceecCCcccccccCCCHHHH-HHHHHHHhhHHHHHHHhCCCHHHccCCCCccccccccHHHHHHHHHHHHHHHHHHH Confidence 44455556655433 223333 3778888888999999999999987422 122222333333333333333 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHH Q lcl|Aclame:pro 356 RLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRA 435 (456) Q Consensus 356 ~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~ 435 (456) .+..+...| .. ....+++.+..-.-.+.++.+++..++.++|+++.-.+++.+|+.+.+-- T Consensus 341 ie~~l~~~L----------l~--~~~~~~f~~~~llr~d~~~r~~~~~~~~~~G~lT~NE~R~~~glpp~~gg------- 401 (409) T protein:vir:83 341 VMAALDRWA----------LP--SPQHLELNRDDYTRPSLVERATAYKIMIEAGVMEPNEARAMERLHSEAAA------- 401 (409) T ss_pred HHHHHHHhh----------CC--CCcEEEeehhhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC------- Confidence 333322211 11 12234544455566788899999999999999999999988887543100 Q ss_pred HHHHHHHhhccc Q lcl|Aclame:pro 436 REQITLFAGNPV 447 (456) Q Consensus 436 ~e~~~~~~~~~~ 447 (456) +.+.+..+ T Consensus 402 ----d~l~~~gv 409 (409) T protein:vir:83 402 ----VRLSGGGV 409 (409) T ss_pred ----cccCCCCC Confidence 00000011 No 232 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=97.22 E-value=0.00013 Score=41.93 Aligned_cols=417 Identities=13% Similarity=0.075 Sum_probs=168.8 Q ss_pred CC---CCCHHHH------------HH--HHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHH Q lcl|Aclame:pro 1 MT---ASTPAEW------------LP--VLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMV 63 (456) Q Consensus 1 ~~---~~t~~~~------------~~--~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~i 63 (456) -| |.+.+-. +. --+..-.....+|+.+..+++-+..+ ..| T Consensus 20 ~s~~~p~~ddg~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~Av-----------------------~eI 76 (558) T protein:vir:10 20 ISPVPKNNEDGVDNFISSGFYGQYVDIEGAYRSEYDLIRRYREMALHPEADGAI-----------------------EDV 76 (558) T ss_pred ccccCCCccccccceeccceeeeeecccchhhhHHHHHHHHHHHhhccchhhHH-----------------------HHh Confidence 01 1111100 00 00000011111222222222221111 111 Q ss_pred HHHH-HHhhhcCCcccCCC-------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC----CCceEEE Q lcl|Aclame:pro 64 RDSV-ADRIIPNGITVGGS-------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD----DGTATIT 131 (456) Q Consensus 64 Vd~~-~~~l~g~~~~~~~~-------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~----~g~~~i~ 131 (456) |+.. +.--..+||.+.-+ -.+....++..++.--+|+....+..+...+.|+-|.|...|. +|-..++ T Consensus 77 Vneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRiyfHKiid~k~pk~GI~ELr 156 (558) T protein:vir:10 77 VNEAIVSDLYDSPVEVELSNLNASNTLKKKIREEFRYIKEMMDFDKKSHEIFRNWYVDGRVFYLKVIDTKNPQEGIQDLR 156 (558) T ss_pred hcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccceeee Confidence 1111 11111233433211 1122344566666667889999999999999999999988764 4767899 Q ss_pred EEccceEEEEeeCCCC-ceeEEEEEEEEec-----CCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccccccc Q lcl|Aclame:pro 132 ADSPETMVVSVDPLQP-WRIRAAMRWWRDL-----DAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGD 205 (456) Q Consensus 132 ~~~p~~~~~i~d~~~~-~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (456) .++|+.+-.+..-... .....+. ..+.. ......+.+|.+...+.......... .....++... +.. T Consensus 157 ~lDPr~i~~Vr~i~~~~~~~~~~~-~~~~~~~~~~~~~~~eyy~Y~~~~~~~~~~~~~~~~-~~~vkI~~dA-----I~y 229 (558) T protein:vir:10 157 YIDPLKIKFIRQEKRKPGNQDPAI-RVRSEQDVVPNPEFEEFYIYTPKVQHPTGMVGQMGG-KNSIKIAKDS-----ITM 229 (558) T ss_pred eeCcccceeeeeecccccccccee-eeecccceeeccceeEeeeecCCcccccccceeecC-CCceeechhh-----eee Confidence 9999998777542111 0000100 11111 11222334444433222111000000 0000000000 000 Q ss_pred ccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhhhhhhhh Q lcl|Aclame:pro 206 AVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYASIFEAA 284 (456) Q Consensus 206 ~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~~~~~~~ 284 (456) .|.++ +..++..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... -+ ....... T Consensus 230 ~hSGL-----~d~~~~~i~syLhkAIKp~NQL-kmlEDAlVIYRitRAPERRvFYIDVGnLPk~KAeq-Yl--r~iM~k~ 300 (558) T protein:vir:10 230 CTSGL-----VDRNKNRVLSYLHKAIKALNQL-RMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQ-YL--KEVMSRY 300 (558) T ss_pred ecccc-----eecCCCeeeecchHhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--HHHHHhc Confidence 01100 0111111123333322221111 12222222222222222211100000 00000000 00 0000000 Q ss_pred ccce----------------------eec----CCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc-cc Q lcl|Aclame:pro 285 PGAL----------------------WEL----PPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQ 337 (456) Q Consensus 285 ~~~~----------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~ 337 (456) .+++ |.- ..+..+..++...--+-++-++-+.+.++...++|..-++..++ |. T Consensus 301 KNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnLgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~ 380 (558) T protein:vir:10 301 RNKLVYDANTGEVRDDRKFMSMMEDFWLPRREGGRGTEITTLPGGQNLGELSDVDYFQKKLYRALGVPESRIAAEGGFNL 380 (558) T ss_pred cceEEEeccCceecccchhhhhHhhhcccccCCCCccceeeccccCCcchHHHHHHHHHHHHHHhCCCccccCCCCcccc Confidence 1111 110 11122223332221112333555556778888999887765432 22 Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHH-------HH Q lcl|Aclame:pro 338 -SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYS-------AA 402 (456) Q Consensus 338 -Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad-------~~ 402 (456) -+..|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++ ++ T Consensus 381 Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l 460 (558) T protein:vir:10 381 GRSSEILRDELKFAKFVGRLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGML 460 (558) T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHH Confidence 233455556667777888999999999999887666666421 135778886654444333333 33 Q ss_pred HHHHh--cCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHH----------HHhhcc---------------cccccCCC Q lcl|Aclame:pro 403 SLAKA--AGESWASIRRN-ILNYNADQIKQDDLDRAREQIT----------LFAGNP---------------VQRPQEDG 454 (456) Q Consensus 403 ~kl~~--~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~----------~~~~~~---------------~~~~~~~G 454 (456) ..+.. +..+|.+++++ .|.+++++++++..+.++|.-. .+++.+ ..+|..+| T Consensus 461 ~~~dpyvGky~S~dyi~k~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (558) T protein:vir:10 461 ATIEPYIGKYYSTEYVRKRVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITGEPLPQEGDPAMEGMGEQPVDPDLEA 540 (558) T ss_pred HHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhhccccCccCCchhccCCCCCccccccc Confidence 32221 12469998865 7899999888776554444321 122111 11112222 Q ss_pred CC Q lcl|Aclame:pro 455 SR 456 (456) Q Consensus 455 s~ 456 (456) +. T Consensus 541 ~~ 542 (558) T protein:vir:10 541 QA 542 (558) T ss_pred ch Confidence 22 No 233 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=97.10 E-value=0.00017 Score=41.25 Aligned_cols=390 Identities=11% Similarity=-0.012 Sum_probs=148.3 Q ss_pred CC--------------CCCHHH--HHHHHHHHHHHHHHHHHHHHHHhhccC-----cccccCcccchhhhhhhhhhcCCh Q lcl|Aclame:pro 1 MT--------------ASTPAE--WLPVLTKRIDDGMSRVRLLARYSNGDA-----PLPELTRNTSAAWRSFQREARTNW 59 (456) Q Consensus 1 ~~--------------~~t~~~--~~~~l~~~~~~~~~~~~~~~~YY~g~~-----~i~~~~~~~~~~~~~~~~k~~~n~ 59 (456) |. ...+.+ .+......+..+ =|.|-. .|+. ....-.-++.. ..... T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~iLr-~~~~~~ly~~m---~~D~h 67 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMST---------SYDVVVDREFDELLQ-GKDGLLVYHKM---LSDGT 67 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhccc---------ccccccccchhHhhc-cccchHHHHHH---hhChH Confidence 11 000000 000000000000 000000 0000 00000001111 11345 Q ss_pred HHHHHHHHHHhhhcCCcccCCCccccHHHH----HHHHHHh-------cChhHHHHHHHHHHhhCCeeE-EEEEe-CCCC Q lcl|Aclame:pro 60 GLMVRDSVADRIIPNGITVGGSADSDLALR----ARRIWRD-------NRMDSVCKQWVKYGLDFGESY-LTCWR-RDDG 126 (456) Q Consensus 60 ~~~iVd~~~~~l~g~~~~~~~~~d~~~~~~----l~~~~~~-------n~~~~~~~~~~~~~~~~G~a~-~~v~~-~~~g 126 (456) ..-++++....+.+.++++....++....+ +.+.+.. ..|..++.++ .++.-||.+. +++|. ..+| T Consensus 68 i~s~l~~Rk~av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~-lda~~~G~s~~Eivw~~~~~g 146 (448) T protein:vir:79 68 VKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIY-ENAYIYGMAAGEIVLTLGADG 146 (448) T ss_pred HHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHH-HHhhhhcceeEEEEeeecCCC Confidence 566667777777788888743222222222 2222221 1345555444 5688899875 46774 5677 Q ss_pred ceEEEE---EccceE-EEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccc Q lcl|Aclame:pro 127 TATITA---DSPETM-VVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVP 202 (456) Q Consensus 127 ~~~i~~---~~p~~~-~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (456) ...+.. .+|+.+ ...+|+... . .+.+....... . .. . T Consensus 147 ~~~~~~l~~r~~~~~~~f~~~~d~~----------------l---~~~~~~~~~~~--------~-----~~-~------ 187 (448) T protein:vir:79 147 KLILDKIVPIHPFNIDEVLYDEEGG----------------P---KALKLSGEVKG--------G-----SQ-F------ 187 (448) T ss_pred ceecccccccCCccccceeeecCCc----------------e---EEeecCCcccc--------c-----cc-C------ Confidence 654332 233221 112222111 0 00000000000 0 00 0 Q ss_pred cccccccCceeEEEEe----cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhhhh- Q lcl|Aclame:pro 203 VGDAVVTGSPPPVVVY----QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDY- 277 (456) Q Consensus 203 ~~~~~~~~~~~pv~~~----~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~~~- 277 (456) ....+...+. .+++. -|+.|.|.+..+.-..--=+..+.+.+..++.|+.|.++.+-...... .+++...+.. T Consensus 188 ~~~~~lP~~~-~i~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vgky~~ga~~-~~~~~~~l~~a 265 (448) T protein:vir:79 188 VSGLEIPIWK-TVVFLHNDDGSFTGQSALRAAVPHWLAKRALILLINHGLERFMIGVPTLTIPKSVRQ-GTKQWEAAKEI 265 (448) T ss_pred CCccccccce-EEEEecCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCc-CHHHHHHHHHH Confidence 0000000111 11111 256678887765432222233477778888999999887663211110 1111111111 Q ss_pred hhhhhhhccceeecCCCcceeeccc-cchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 278 ASIFEAAPGALWELPPGVDIWESQA-NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDR 356 (456) Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~ 356 (456) ...+..+......++.+.++..+.. .....+...++.+-++|+...--.....+. .++.+..++.....-....++.- T Consensus 266 v~~i~~g~~a~~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLGqtlTs~~-~~g~~~~~~~~~~~v~~~~~~aD 344 (448) T protein:vir:79 266 VKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARALGIDFNTVQL-NMGVQAINIGEFVSLTQQTIISL 344 (448) T ss_pred HHHHhcCCceEEEecCCceEEEEecCCCcccHHHHHHHHHHHHHHHHhhhhhcccc-ccchhhhhhhhHHHHHHHHHHHH Confidence 1111223333445666665433221 111234455666666776543211111111 11122222222111122222233 Q ss_pred HHHHHHHHHH-HHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHHHHHHHH Q lcl|Aclame:pro 357 LSIAKIGLEA-ILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRA 435 (456) Q Consensus 357 ~~~f~~~l~~-~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~~e~~~~ 435 (456) .+.+...+.+ ++.-++.+.......--.+.|....+.+.++.|+.+.+|+..+.....-..+.++..+....+ +. T Consensus 345 a~~i~~tln~~li~~l~~lNfg~~~~~P~~~f~~~e~~Dl~~~a~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~---~~- 420 (448) T protein:vir:79 345 QREFASAVNLYLIPKLVLPNWPSATRFPRLTFEMEERNDFSAAANLMGMLINAVKDSEDIPTELKALIDALPSK---MR- 420 (448) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCcEEEecCCChHHHHHHHHHhhhhhccchhhHHHHHHhhcCCCCCCCc---cc- Confidence 3445555543 555555554222222236778888888889899999888766544433344444432110000 00 Q ss_pred HHHHHHHhhcccccccC-----CCCC Q lcl|Aclame:pro 436 REQITLFAGNPVQRPQE-----DGSR 456 (456) Q Consensus 436 ~e~~~~~~~~~~~~~~~-----~Gs~ 456 (456) .+....+.+++ .-+| T Consensus 421 ------~a~~~~~~~~~~~~~~~~~~ 440 (448) T protein:vir:79 421 ------RALGVVDEVREAVRQPADSR 440 (448) T ss_pred ------cccCCCCcccccccCCcccc Confidence 00111111112 2222 No 234 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=97.06 E-value=0.00019 Score=41.02 Aligned_cols=416 Identities=13% Similarity=0.053 Sum_probs=175.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC------C-c Q lcl|Aclame:pro 4 STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN------G-I 76 (456) Q Consensus 4 ~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~------~-~ 76 (456) |+-.+-.+.|..+......+.+.+.+|..-.--.. -+ .. ...+....++..+-....++.+++.|.+- | | T Consensus 1 m~~~~r~~~L~~~R~~~e~~w~e~~~~tlP~~~~~-~~-~~-~~~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~~WF 77 (522) T protein:vir:10 1 MKARERYNQLTTARQMFLDKAVECSELTLPYLIDD-DI-SS-RPNHKSLTVPWQSVGAKCCVTLAAKLMLAVLPPQTSFF 77 (522) T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhhhcccCC-CC-CC-CcccccccccccchHHHHHHHHHHHHHHhhcCCCCccc Confidence 44444455555444444555566666643211000 00 00 11112222355566677777777776533 2 2 Q ss_pred ccCCCcc-------cc-----------HHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceE Q lcl|Aclame:pro 77 TVGGSAD-------SD-----------LALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETM 138 (456) Q Consensus 77 ~~~~~~d-------~~-----------~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~ 138 (456) ++...++ .+ ..+.+...+..++|.....++.++...+|.|-++ .++++ ++.++-.+. T Consensus 78 ~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly--~~~~~---~~~~pl~~y 152 (522) T protein:vir:10 78 KLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASNDRVAVHQALKHLIVGGNALIF--MGKDG---LKTFPLTRY 152 (522) T ss_pred cccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCceeEE--EcCCC---ceEEEcceE Confidence 3321111 00 0112334466678999999999999999998765 45554 455555554 Q ss_pred EEEeeCCCCceeEEEEEEEEec-------CC-------------ceeEEEEEeCCeEEEEEEcccccccccceeeccCCC Q lcl|Aclame:pro 139 VVSVDPLQPWRIRAAMRWWRDL-------DA-------------ESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISD 198 (456) Q Consensus 139 ~~i~d~~~~~~~~~~i~~~~~~-------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (456) .+--| ..+ .+..++|.++-. .+ ....+++| +.+... .....+.......+ T Consensus 153 ~v~~d-~~G-~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~------~~v~p~--~~~~~~~~~~~~~~ 222 (522) T protein:vir:10 153 VINRD-GDG-NVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIY------TYVKLD--KSSGRWVWHQEAFD 222 (522) T ss_pred EEeeC-CCC-CeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEE------EEEEee--ccCCceEEEEccCC Confidence 44444 344 444444443210 00 11112222 222110 00001111111111 Q ss_pred cccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc--CCCcccccccc Q lcl|Aclame:pro 199 SWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK--STEHGLPNVDE 270 (456) Q Consensus 199 ~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~--G~~~~~~~~d~ 270 (456) ........+.++.-+|++.+ .+..|.|-.+..++-+..++...-......+....|...+. |... T Consensus 223 ~~~~~~~s~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~~~~~~~a~~p~~lv~~~~~~~------- 295 (522) T protein:vir:10 223 KIIPDSRSTAPKNASPWLPLRFNTVDGEDYGRGRVEEFLGDLKSLDGLSQSLIEGAAAASKVVFLVSPSSTTK------- 295 (522) T ss_pred ccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccccccc------- Confidence 11111112223344444332 24578998899999999998877777777777676654442 1111 Q ss_pred chhhhhhhhhhhhhccceeecCC-Ccceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHH Q lcl|Aclame:pro 271 NGNAIDYASIFEAAPGALWELPP-GVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKG 348 (456) Q Consensus 271 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~ 348 (456) + ......+.|.+....+ +....++. ..+++.....++.+...|....-+ ....+..+.++.-++..... T Consensus 296 ---~---~~l~~~~~~~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~ri~~aFl~---~~~~d~~rvTAtEV~~r~~E 366 (522) T protein:vir:10 296 ---P---ATIAKAGNGAIVQGRPEDVAVIQVGKTADFSTAANMATAIEKRLLEAFLV---MNVRNAERVTAEEVRLTQLE 366 (522) T ss_pred ---c---ccccCCCCcceecCCCccceeecccccccchHHHHHHHHHHHHHHHHHhh---ccCCCCCCCCHHHHHHHHHH Confidence 1 0111122222222111 12222222 233433333333333333321100 00123344577766665555 Q ss_pred HHHHHHH----HH-HHHHHHHHHHHHHHHHhcCC-Cc--c---ccceEEecCCCCCCHHHHHHHHH----HHHh-cCC-- Q lcl|Aclame:pro 349 FLFKCED----RL-SIAKIGLEAILVKALQIEGE-SV--E---DTVDVSFESPDRVTLGEKYSAAS----LAKA-AGE-- 410 (456) Q Consensus 349 l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g~-~~--~---~~i~v~f~~~~~~~~~e~ad~~~----kl~~-~g~-- 410 (456) +.+...- ++ ..+.+-+.+.+.++.+ .|. +. . ....|++..++-+ ++.++.+. .+.+ +|- T Consensus 367 ~~~~LGpv~~rl~~E~l~Pli~r~~~il~r-~g~lP~~p~~~~~~~~v~~is~Lar--aq~~~~l~~~~~~i~~~~~p~~ 443 (522) T protein:vir:10 367 LEQQLGGIFSLLVIEFLIPYLNRTLLVLQR-SNQIPKLPKDIVRPTIVAGVNALGR--GQDRESLTAFVGTIAQTLGPEA 443 (522) T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCccccccccccchhHHHH--HHHHHHHHHHHHHHHHhhCchh Confidence 5443322 22 3334455666665544 221 11 1 1123444444322 22222221 1111 111 Q ss_pred ----CcHHH----HHHhCCCC-------ccHHHHHHHHHHHHHHH----HHhhcccccccCCCCC Q lcl|Aclame:pro 411 ----SWASI----RRNILNYN-------ADQIKQDDLDRAREQIT----LFAGNPVQRPQEDGSR 456 (456) Q Consensus 411 ----~s~~t----~~~~~~~~-------~~~~~~~e~~~~~e~~~----~~~~~~~~~~~~~Gs~ 456 (456) +.-.. ....+|.. +++++++++++++.+.. ..++..+..+..+|++ T Consensus 444 ~~~~id~d~~~~~~a~~~Gvp~~~ivrt~eev~~~~q~~q~~~~~~~~~~~a~~~~~~~~~~~~~ 508 (522) T protein:vir:10 444 LMQYLNPLEAIKRLAAAQGIDVLNLVKTEQQLAEEQQAAQQQAAQQSLVDQAGQMTGSPLMDPTK 508 (522) T ss_pred hhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc Confidence 11111 12334543 23444444444333221 1233345556666776 No 235 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=97.06 E-value=0.00019 Score=40.98 Aligned_cols=345 Identities=10% Similarity=-0.068 Sum_probs=141.8 Q ss_pred HHHHHHHHHHhhccCcccccCcccchhhhhhhhhh--cCChHHHHHHHHHHhhhcCCcccCC--Cc----c---ccHHHH Q lcl|Aclame:pro 21 MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA--RTNWGLMVRDSVADRIIPNGITVGG--SA----D---SDLALR 89 (456) Q Consensus 21 ~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~--~~n~~~~iVd~~~~~l~g~~~~~~~--~~----d---~~~~~~ 89 (456) ..-+.+...+-.+.-.- ...... . .....+ .......+|+..++-+..-|+.+-- .. + ...... T Consensus 1 Mg~f~~~~~~~~~~~~~-~~~~~~-~---~~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNN-DTQRVT-A---WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) T ss_pred CccchhhhhhhcccccC-Ccceee-e---cccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEcccccccccccccccch Confidence 11111111111111000 000000 0 000011 1224556777777777777775410 00 0 011233 Q ss_pred HHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEe-CCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCc Q lcl|Aclame:pro 90 ARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWR-RDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAE 163 (456) Q Consensus 90 l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~-~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~ 163 (456) +..++.. | ....+...++..++.+|.||++... +..|++. .+-|. +. T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~--~l~~~------------------------~~- 128 (378) T protein:vir:16 76 LDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELL--DLLFA------------------------DD- 128 (378) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEE--EEEec------------------------CC- Confidence 5555542 2 2345566788889999999986433 2223221 10000 00 Q ss_pred eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCC-CCchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 164 SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPD-GMGEVEPHIDIINRINRAEL 242 (456) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~-~~s~~~~v~~liD~~~~~~s 242 (456) . ..|..+.++|+ +++. +.....++-.+.+.++..++ T Consensus 129 ~---~~~~~~diih~----------------------------------------r~~~~~~~~~s~l~~~~~~i~~~~~ 165 (378) T protein:vir:16 129 K---KEYKPEELVRL----------------------------------------TSPFYINEDTSILDNALASIQTKLE 165 (378) T ss_pred e---eEecccceEEe----------------------------------------cCccCccchhHHHHHHHHHHHHHHh Confidence 0 01112223222 1111 11111222233333332221 Q ss_pred HHHHHHHHHhhhHHhhcCCCccccccccchhhh-hh-hhhhh-----hhccceeecCCCcceeeccccchHHHHHHHHHH Q lcl|Aclame:pro 243 QLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI-DY-ASIFE-----AAPGALWELPPGVDIWESQANDFTPMLSAIKEH 315 (456) Q Consensus 243 ~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~-~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456) . +.+.-++... ....++..... .. ...++ ...+.+..++.+.++.++...+...-...++.+ T Consensus 166 ~--------~~~~g~l~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~~~~~~ 234 (378) T protein:vir:16 166 Q--------GKLRGLLKIN---AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLI 234 (378) T ss_pred c--------CccceeeEeC---CcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhHHHHHHH Confidence 1 1111111110 00011111110 00 11111 123567788888888776543322222445777 Q ss_pred HHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccceEEecCCCCC Q lcl|Aclame:pro 316 IRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV--EDTVDVSFESPDRV 393 (456) Q Consensus 316 ~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~--~~~i~v~f~~~~~~ 393 (456) ..+||.+-++|+..+.+.. .....+.+....|.-.+...+..+...|-.-- -...|... ...+.+.+...... T Consensus 235 ~~~Ia~~fgVPp~~l~g~~--~e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~---e~~~~~~~~~~~~~~f~~~~l~~~ 309 (378) T protein:vir:16 235 KSELLTGYFMNENILLGTA--SQEQQIYFYNSTIIPLLIQLEKELTYKLISTN---RRRVVKGNLYYERIIVDNQLFKFA 309 (378) T ss_pred HHHHHHHhCCCHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhcCChh---hhhhhhhcccccceeeccchhhhc Confidence 7899999999998885432 22222223223333333332222222210000 00111111 22344455566678 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-H----HHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-Q----DDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~----~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +..+.++++.+++..|+++.-.+++.+|+.|-+-- + .......+............+++++.- T Consensus 310 d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n 377 (378) T protein:vir:16 310 TLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNN 377 (378) T ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccccccccchhhhcCccCCCCCCCCCCC Confidence 88999999999999999999999999998764211 1 001111111111111122222222222 No 236 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=97.05 E-value=0.00019 Score=40.95 Aligned_cols=429 Identities=10% Similarity=0.013 Sum_probs=173.5 Q ss_pred CCC----CCHHHHHHHHHHHHHHHHH----HHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTA----STPAEWLPVLTKRIDDGMS----RVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~----~t~~~~~~~l~~~~~~~~~----~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |.. -.+.+.++...+++...+. +++.+.+|..-.. ..+... . -+....++..+-....++.+++.|. T Consensus 1 ~~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~~---~~~~~~-~-~~~~~~~~~dst~~~a~~~Laa~l~ 75 (543) T protein:vir:88 1 MAETKREGLAEEGAKAVYERLKNDRVPYETRAENCAKVTIPSL---FPKDSD-N-SSTDYTTPWQAVGARGLNNLSAKVM 75 (543) T ss_pred CcccccCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc---CCCCCC-c-ccccccccccchHHHHHHHHHHHHH Confidence 653 3356666666666555443 3344455543211 000000 0 0111112445566667777777776 Q ss_pred cC--C----cccCCCc--------cccHHH-----------HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCc Q lcl|Aclame:pro 73 PN--G----ITVGGSA--------DSDLAL-----------RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGT 127 (456) Q Consensus 73 g~--~----~~~~~~~--------d~~~~~-----------~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~ 127 (456) +- | |++...+ +.+... .+...+..++|.....++.++...+|.|-+++-.+.+.. T Consensus 76 ~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~ly~~~~~~~~ 155 (543) T protein:vir:88 76 LALFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEANSYRVTLFELIRQLALAGTALIYLPPPDASS 155 (543) T ss_pred HhhcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeccCcccc Confidence 43 1 2221111 011111 233445667899999999999999999977665444322 Q ss_pred eE---EEEEccceEEEEeeCCCCceeEEEEEEEEecC-----------------CceeEEEEEeCCeEEEEEEccccccc Q lcl|Aclame:pro 128 AT---ITADSPETMVVSVDPLQPWRIRAAMRWWRDLD-----------------AESDFAIVWSGDGWQKFARPCFVQSS 187 (456) Q Consensus 128 ~~---i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (456) .+ ++.++-.+ +++.-+..+ ++...+|.++-.- +....+++| +.+... ... T Consensus 156 ~~~~~~~~~pl~~-y~v~~d~~G-~v~~i~r~~~~~~~~l~~~~~~~v~~~~~~~p~~~~~v~------~~V~pr--~~~ 225 (543) T protein:vir:88 156 NSYNPMKLYTLHN-HVVQRDAFG-NVLQIVTLDKVAYAALPEDVRNSLSGGQEYKPEQELEVY------THIYID--DES 225 (543) T ss_pred ceecceEEeEcce-EEEeeCCCC-CeeeeeeeeeccHHHHhHHhhHHHHHHhhcCCccceEEE------EEEEee--cCC Confidence 22 34444444 444333333 4555555443110 111123333 222110 000 Q ss_pred ccceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC Q lcl|Aclame:pro 188 SRRRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKST 261 (456) Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~ 261 (456) ..+.......+...........++-+|++.+ .+..|.|-.+..++.+..+|...-.....++....|.+.+. T Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~~v~-- 303 (543) T protein:vir:88 226 GDFLSYQEIEGVEVDGSDGQYPQDALPWIAVRWTKRDGEHYGRSHVEEYLGDLNSLESLNEAMIKFAMISSKVVGLVN-- 303 (543) T ss_pred CcccccccccCeeeecCCCccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeec-- Confidence 0000001111111111111122233343322 24578998899999999999888888888888777764431 Q ss_pred CccccccccchhhhhhhhhhhhhccceeecC-CCcceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchH Q lcl|Aclame:pro 262 EHGLPNVDENGNAIDYASIFEAAPGALWELP-PGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSA 339 (456) Q Consensus 262 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg 339 (456) ++|.. ........+.|.+.... .+....++. ..++......++.+...|....-+. .....+....++ T Consensus 304 --------~~g~~-~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~-~~~~~~~~r~TA 373 (543) T protein:vir:88 304 --------PNGIT-QVRRLVKAQTGDFVAGRKADIEFLQLEKTADFTVAKSVADAIEARLSYVFMLN-SAVQRSGERVTA 373 (543) T ss_pred --------ccccc-chhhcccCCCceeecCCCCcceeeecccccchhHHHHHHHHHHHHHHHHHhhh-hhccCCCCcccH Confidence 11100 01111222333332222 222223332 2344433344444444443222111 111122334566 Q ss_pred HHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhcCC--CccccceEEecCC-CCCCHHHHHHHHHHHHh-cCC Q lcl|Aclame:pro 340 EGAHNIEKGFLFKCED----RL-SIAKIGLEAILVKALQIEGE--SVEDTVDVSFESP-DRVTLGEKYSAASLAKA-AGE 410 (456) Q Consensus 340 ~Al~~~~~~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g~--~~~~~i~v~f~~~-~~~~~~e~ad~~~kl~~-~g~ 410 (456) .-++.....+.....- .+ ..+.+-+.+++.++.+..-. .....+++.+.-+ .+-...+.++.+....+ .|- T Consensus 374 tEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~v~~ 453 (543) T protein:vir:88 374 EEIRYVASELEDTLGGVYSILSQELQLPIVRVLLNQLQATQQIPNLPQEAVEPTVTTGAEALGRGQDLDKLTQFLNAVAT 453 (543) T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeEEecHHHHHHHHHHHHHHHHHHHHHh Confidence 6555544444433332 11 22334444555554432211 1223455655432 22222333333322221 111 Q ss_pred C---------cHHHH----HHhCCCCc-------cHHHHHHHHHHHHHHHHHhhc-c----------------------c Q lcl|Aclame:pro 411 S---------WASIR----RNILNYNA-------DQIKQDDLDRAREQITLFAGN-P----------------------V 447 (456) Q Consensus 411 ~---------s~~t~----~~~~~~~~-------~~~~~~e~~~~~e~~~~~~~~-~----------------------~ 447 (456) + .-..+ ...+|..+ ++++++.++++.++..+.+.. . + T Consensus 454 ~~~p~vld~id~d~~~~~~a~~~Gv~~~~i~r~~~e~~~~~~q~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (543) T protein:vir:88 454 VSQLNGDPDLNVNNIKLRLANAIGIDTAGLLLTEAEKAQAQSQEMLKQGGLNAAAGIGSGVAAQATASPEAMESAMDTAG 533 (543) T ss_pred ccchhhhccCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccChHHHHHHhhhcC Confidence 1 11111 23456633 334444333332221111100 0 1 Q ss_pred ccccCCCCC Q lcl|Aclame:pro 448 QRPQEDGSR 456 (456) Q Consensus 448 ~~~~~~Gs~ 456 (456) -.|++.|.+ T Consensus 534 ~~~~p~~~~ 542 (543) T protein:vir:88 534 VQPGPIATQ 542 (543) T ss_pred CCCCCCCCC Confidence 111111222 No 237 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=97.02 E-value=0.00021 Score=40.80 Aligned_cols=427 Identities=11% Similarity=0.012 Sum_probs=167.1 Q ss_pred CCCCC----HHHHHHHHHHHHHHHH----HHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhh Q lcl|Aclame:pro 1 MTAST----PAEWLPVLTKRIDDGM----SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRII 72 (456) Q Consensus 1 ~~~~t----~~~~~~~l~~~~~~~~----~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~ 72 (456) |...- ..+-++...+.+...+ .+++.+.+|..-.. ..+... .-.+...++..+-+...++.+++.|. T Consensus 1 m~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~---~~~~~~--~~~~~~~~~~dst~~~a~~~LAa~L~ 75 (532) T protein:vir:99 1 MAEVEKTGFAADGAAAAYNRLKNDRGAYETRAEDCATYTIPSV---FPSATA--DGSTSYTTPWQSIGARGLNNLASKLM 75 (532) T ss_pred CcchhhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcc---cCCCCC--cchhhccccccchHHHHHHHHHHHHH Confidence 55322 2344444444444433 33444555533221 111111 11122334555667777777777776 Q ss_pred cC------C-cccCCCcc--------cc----HH-------HHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCC- Q lcl|Aclame:pro 73 PN------G-ITVGGSAD--------SD----LA-------LRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDD- 125 (456) Q Consensus 73 g~------~-~~~~~~~d--------~~----~~-------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~- 125 (456) +- | |++...+. .+ .. ..+...+..++|.....++.++...+|.|-+++..++. T Consensus 76 ~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~ 155 (532) T protein:vir:99 76 LALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERICMNYMESNSFRPTLHAAIKQLLVAGNVLLYIPSTEQV 155 (532) T ss_pred HhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEecccccc Confidence 43 2 23321110 00 11 12334556688999999999999999999888765432 Q ss_pred --CceEEEEEccceEEEEeeCCCCceeEEEEEEEEecC------------------CceeEEEEEeCCeEEEEEEccccc Q lcl|Aclame:pro 126 --GTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLD------------------AESDFAIVWSGDGWQKFARPCFVQ 185 (456) Q Consensus 126 --g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 185 (456) +..+++.++-.+..+.-| ..+ ++..++|..+..- .....+++|+ .+... . T Consensus 156 ~~~~~~f~~~pl~~y~v~~d-~~G-~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~~------~v~~~--~ 225 (532) T protein:vir:99 156 EGQSNAPKLYKLHNFVVERD-AYD-NVLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIYT------HVYRD--P 225 (532) T ss_pred cCcccceEEEEcCeEEEeeC-CCC-CeeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEEE------EEEec--C Confidence 334677777666444444 344 3444444332100 0111223332 11110 0 Q ss_pred ccccceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc Q lcl|Aclame:pro 186 SSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK 259 (456) Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~ 259 (456) ....+..+....+...........+.-+|++.+ .+..|.|-.+..++-+..+|...-......+....|...+. T Consensus 226 ~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~lv~ 305 (532) T protein:vir:99 226 EAMVFRSYQEIDGEIVAGTEGEYPLDSCPWIPVRLIKMPNEDYGRSFVEEYLGDLKSLENLYEAIVKMSMISSKVLFFVN 305 (532) T ss_pred CCCeeEEEEeecCceecccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceec Confidence 000011111111111111111112333343322 23568898888999898888776666655565555542221 Q ss_pred CCCccccccccchhhhhhhhhhhhhccceeecCCC-cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccc Q lcl|Aclame:pro 260 STEHGLPNVDENGNAIDYASIFEAAPGALWELPPG-VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ 337 (456) Q Consensus 260 G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~ 337 (456) .+|.. ..........|.+....++ ....++. .++++.-...++.+...|....-. +.....++... T Consensus 306 ----------p~g~~-~~~~~~~~~~g~~v~g~~~~i~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~-~~~~~~d~~r~ 373 (532) T protein:vir:99 306 ----------PNGVT-QIRRVAKANTGDFVAGRKQDVEVFQLEKYNDFQVAKATADDIEKRLSYAFML-NSAVQRGGDRV 373 (532) T ss_pred ----------ccccc-chhhhccCCCcceecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhh-hhcccCCCCcc Confidence 11110 1112223334444333332 2222322 234443334444444333321111 11111223345 Q ss_pred hHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhcCCCc--cc--cce-EEecCCCCCCHHHHHHHH----H Q lcl|Aclame:pro 338 SAEGAHNIEKGFLFKCED----RL-SIAKIGLEAILVKALQIEGESV--ED--TVD-VSFESPDRVTLGEKYSAA----S 403 (456) Q Consensus 338 Sg~Al~~~~~~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g~~~--~~--~i~-v~f~~~~~~~~~e~ad~~----~ 403 (456) ++.-++.....+.....- ++ ..+.+-+.+.+.++.+-.-.+. .. ... +++-.++ ..++.++.+ . T Consensus 374 TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~iv~~is~L--araq~~~~l~~~~~ 451 (532) T protein:vir:99 374 TAEEIRYVAGELEDTLGGVYSLLSQELQLPLVKILLKELQATSKIPNLPKEAVEPAIATGLEAL--GRGHDLNKLNVFID 451 (532) T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhcccceeecchHH--HHHHHHHHHHHHHH Confidence 666555544444433322 11 2233444555555543211111 11 111 2332222 222222222 1 Q ss_pred HHHhc-CC----CcHH----HHHHhCCCCc-------cHHHHHHHHHHHHHHHHHh-hccccccc-----------CCCC Q lcl|Aclame:pro 404 LAKAA-GE----SWAS----IRRNILNYNA-------DQIKQDDLDRAREQITLFA-GNPVQRPQ-----------EDGS 455 (456) Q Consensus 404 kl~~~-g~----~s~~----t~~~~~~~~~-------~~~~~~e~~~~~e~~~~~~-~~~~~~~~-----------~~Gs 455 (456) .+.+. |- +.-. .....+|.++ ++++.+.++++..+..+.+ ...+...+ .=|+ T Consensus 452 ~laq~~p~~~d~id~d~~~~~~a~~~GV~~~~i~r~~ee~~~~~~q~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 531 (532) T protein:vir:99 452 YMIKLAGLQDDDINLLDVKMRLANSLGMDTTGLILTQQDKQAKMAEASTAAGMVTAGQQMGAAGGQAAAAMMQQQAGMPT 531 (532) T ss_pred HHHhhcchhhhhCCHHHHHHHHHHHhCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHhhcCCCC Confidence 12111 11 1111 1223456533 2222222221111111111 11111111 1122 Q ss_pred C Q lcl|Aclame:pro 456 R 456 (456) Q Consensus 456 ~ 456 (456) + T Consensus 532 ~ 532 (532) T protein:vir:99 532 Q 532 (532) T ss_pred C Confidence 2 No 238 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=96.95 E-value=0.00024 Score=40.43 Aligned_cols=409 Identities=11% Similarity=0.015 Sum_probs=158.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) -+.+||..+..-+... ..+ ..-+||+..-+++..+ +.-.-+++. .......-++++....+.+.++++.. T Consensus 8 ~~gl~p~rl~~i~~~~----~~~--~~~~~~~~~~~~Lr~~-~~~~ly~~m---~~D~hi~s~l~~Rk~av~~~~w~v~p 77 (488) T protein:vir:95 8 QESLPPFRMGEVGSLG----LKV--KNGRIYEEPRQALRFP-ESIKTFQLM---MRDPAVAASVNIIKMFVRKVNWRFVP 77 (488) T ss_pred CCCCCHHHHHHHHHHh----hcc--ccchhhccchhhhccc-chHHHHHHH---hhChHHHHHHHHHHHHHhcCCceEec Confidence 4578886433222110 000 0123333211111111 111111221 12456677788888888888887742 Q ss_pred Cc--ccc-----HHHHHHHHHHh--cChhHHHHHHHHHHhhCCee-EEEEEeCCCC------------ceEEEEEccceE Q lcl|Aclame:pro 81 SA--DSD-----LALRARRIWRD--NRMDSVCKQWVKYGLDFGES-YLTCWRRDDG------------TATITADSPETM 138 (456) Q Consensus 81 ~~--d~~-----~~~~l~~~~~~--n~~~~~~~~~~~~~~~~G~a-~~~v~~~~~g------------~~~i~~~~p~~~ 138 (456) .. +++ ..+.+.+.+.. +.+..++.++. ++.-+|.+ ++++|....+ ...+..+.++ T Consensus 78 ~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~~i~~R-- 154 (488) T protein:vir:95 78 PKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWAKLPIR-- 154 (488) T ss_pred CCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeeeeeeeeec-- Confidence 21 111 12334444443 23556666664 68889986 4677864332 2221111111 Q ss_pred EEEeeCCCCceeEEEEEEE-EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCcee---E Q lcl|Aclame:pro 139 VVSVDPLQPWRIRAAMRWW-RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPP---P 214 (456) Q Consensus 139 ~~i~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p 214 (456) .+. -++++ .+.++... +.+....... . ... .....+.......+| . T Consensus 155 ----pq~-------~~~~f~~d~d~~l~---~~~~~~~~~~--------~------~~~--~~~~~~~~~~~~~lP~~kf 204 (488) T protein:vir:95 155 ----NQS-------TLDKWYFDEDFRRV---TGVRQNLRNV--------S------HIA--GAINLGERPLTRKLPRAKF 204 (488) T ss_pred ----Ccc-------cccceeeccCCCce---eecccccccc--------c------ccc--cccccccccccccccccce Confidence 000 00011 11111110 0000000000 0 000 000000000111111 1 Q ss_pred EEEe-----cCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccc-cccccchhhhhh-hhhh---- Q lcl|Aclame:pro 215 VVVY-----QNPDGMGEVEPHID--IINRINRAELQLLSTMAIQAFRQRALKSTEHGL-PNVDENGNAIDY-ASIF---- 281 (456) Q Consensus 215 v~~~-----~n~~~~s~~~~v~~--liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~-~~~d~~g~~~~~-~~~~---- 281 (456) |+|. .|+.|.|.+..+.- +... ..+...+..++-|..+..+..|...-. ...+.+...+.. .... T Consensus 205 i~~~~~~~~g~p~g~gLlr~~~w~~~fK~--~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~ 282 (488) T protein:vir:95 205 MLFKYDDEYGNPEGRSPLLNAYVPWKYKV--QIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDM 282 (488) T ss_pred EEEeecCCCCccchhhHHHHHHHHHHHHH--HHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHh Confidence 2232 35677787766432 2222 335555666777777777766632110 001111111110 0000 Q ss_pred hhhccceeecCCCcc--ee----e---c--cccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHH-HHHHHH Q lcl|Aclame:pro 282 EAAPGALWELPPGVD--IW----E---S--QANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAH-NIEKGF 349 (456) Q Consensus 282 ~~~~~~~~~~~~~~~--~~----~---~--~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~-~~~~~l 349 (456) .........++.+.. +. + . .......|...++.+-++|++..--.....+ .++.++-|+. ....-. T Consensus 283 ~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~iLGqtLT~~--~~~~Gs~Al~~vh~ev~ 360 (488) T protein:vir:95 283 IANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAFMSDVLAMG--QSKYGSFSLADSKTSLL 360 (488) T ss_pred hccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHHhccccccc--cCcchhhhHHHHHHHHH Confidence 000001122222211 10 1 1 1122234666666666677764421111111 1111111221 112222 Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCC-c----HHHHHHhCCCC Q lcl|Aclame:pro 350 LFKCEDRLSIAKIGLE-AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGES-W----ASIRRNILNYN 423 (456) Q Consensus 350 ~~k~~~~~~~f~~~l~-~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~-s----~~t~~~~~~~~ 423 (456) ...++.-.+.+...+. +++.-++.+.........++.|....+.+..+.++++.+|+++|+. + .+.+++.+|+. T Consensus 361 ~~i~~aDa~~i~~tln~~li~~l~~~Nfg~~~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip 440 (488) T protein:vir:95 361 AMSVDILLKQIKNVINRDLVAQTYALNMWDDEEHVQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIGLP 440 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCC Confidence 2233333345555554 4565555555333333346788888889989999999999999974 3 34567788876 Q ss_pred ccHHHH-HHHHHHHHHHHH-------Hhh-cccccccCCCCC Q lcl|Aclame:pro 424 ADQIKQ-DDLDRAREQITL-------FAG-NPVQRPQEDGSR 456 (456) Q Consensus 424 ~~~~~~-~e~~~~~e~~~~-------~~~-~~~~~~~~~Gs~ 456 (456) +.+..+ ............ .+. .+.....+++++ T Consensus 441 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (488) T protein:vir:95 441 PADESQPVSEKLSPNSQSRSGDGYKTAGEGTAKTPSAKDPST 482 (488) T ss_pred CCCCCccccccCCCCCCCCCCcccCCCcccCCcccccccchh Confidence 432111 111000000000 000 000000111222 No 239 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=96.94 E-value=0.00025 Score=40.36 Aligned_cols=345 Identities=9% Similarity=-0.076 Sum_probs=135.4 Q ss_pred HHHHHHHHHHhhccCcccccCcccchhhhhhhhhh--cCChHHHHHHHHHHhhhcCCcccCCC------cc---ccHHHH Q lcl|Aclame:pro 21 MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA--RTNWGLMVRDSVADRIIPNGITVGGS------AD---SDLALR 89 (456) Q Consensus 21 ~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~--~~n~~~~iVd~~~~~l~g~~~~~~~~------~d---~~~~~~ 89 (456) ..-+.++..++..+...- .+.. .......+ .......+|+..++-+..-|+.+-.. .+ +..... T Consensus 1 M~~f~k~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNND-TQRV----TAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) T ss_pred CchhhhhhhhhhcccccC-Ccce----eeeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEEeccccccccccccccch Confidence 222222222222211100 0000 00000011 12244567777777777667654110 00 111223 Q ss_pred HHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEE-EEeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCc Q lcl|Aclame:pro 90 ARRIWRD--NR---MDSVCKQWVKYGLDFGESYLT-CWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAE 163 (456) Q Consensus 90 l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~-v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~ 163 (456) +..++.. |. -..+...++...+.+|.||++ +..+.+|++..... . ++. T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~------------------------~--~~~ 129 (378) T protein:vir:85 76 LDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLLF------------------------A--NDK 129 (378) T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEEe------------------------c--CCC Confidence 5555532 32 234455677888899999976 34444443322111 0 000 Q ss_pred eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCC-chHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 164 SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGM-GEVEPHIDIINRINRAEL 242 (456) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~-s~~~~v~~liD~~~~~~s 242 (456) . .|.++.+.++. ++... +....+-.+.+.++... T Consensus 130 ~----~~~~~dvih~~----------------------------------------~~~~~~~~~~~~~~a~~~~~~~~- 164 (378) T protein:vir:85 130 K----EYKPEELVRLV----------------------------------------SPFYINEDTSILDNALASIQTKL- 164 (378) T ss_pred E----EEcccceEEEe----------------------------------------cCcCccchhhHHHHHHHHHHHHH- Confidence 0 11122222211 11000 00111111222221111 Q ss_pred HHHHHHHHHhhhHHhhcCCCccccccccchhhh-hhh-hhh-----hhhccceeecCCCcceeeccccchHHHHHHHHHH Q lcl|Aclame:pro 243 QLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI-DYA-SIF-----EAAPGALWELPPGVDIWESQANDFTPMLSAIKEH 315 (456) Q Consensus 243 ~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~-~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456) . .+.+.-+++ .. ....++..... ... ..+ ....+.+..++.+.++.++...+...-.+.++.. T Consensus 165 --~-----~~~~~g~l~-~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~~~~~~ 234 (378) T protein:vir:85 165 --E-----QGKLRGLLK-IN--AFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIELI 234 (378) T ss_pred --h-----cCCcceEEE-eC--CcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhhhHHHHHHH Confidence 0 111111111 00 00011111111 000 001 1223457778888888776532211112445666 Q ss_pred HHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEe--cCCCCC Q lcl|Aclame:pro 316 IRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSF--ESPDRV 393 (456) Q Consensus 316 ~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f--~~~~~~ 393 (456) ..+||.+-++|++.+.+. +.....+.+....|.-.+...+..+...|-. ---+-.|......+++.| ....-. T Consensus 235 ~~~Ia~~fgVPp~~l~~s--~~e~~~~~f~~~tL~P~~~~ie~~l~~kLl~---~~er~~~~~~~~~~~~~f~~~~l~~~ 309 (378) T protein:vir:85 235 KSELLTGYFMNENILLGT--ATQEQQIYFYNSTIIPLLIQLEKELTYKLIS---TNRRRVVKGNLYYERIIVDNQLFKFA 309 (378) T ss_pred HHHHHHHhCCCHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---hhhhhhhhhccccceeeecchhhhhc Confidence 788999999999988542 2222222222222222222222222111100 000011211222233444 445567 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHH-HH----HHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIK-QD----DLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~-~~----e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +..+.++++.++...|+++.-.+++.+|+.|-+-- +. ......+............+.+++.. T Consensus 310 d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~gGD~~~~~~N~~~~~~~~~~~~~~~~~~~~~e~~n 377 (378) T protein:vir:85 310 TLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDIYIANLNAVAVKNLSDLQGSRKDVASTDETNN 377 (378) T ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccccccchhhcCccCCCCCCCCCCC Confidence 88899999999999999999999999998753211 00 00010000011111111122222322 No 240 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=96.93 E-value=0.00025 Score=40.30 Aligned_cols=426 Identities=12% Similarity=0.063 Sum_probs=172.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhh-cCChHHHHHHHHHHhhh-----cC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA-RTNWGLMVRDSVADRII-----PN 74 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~-~~n~~~~iVd~~~~~l~-----g~ 74 (456) ++|..-++=...+...+ +-..-++|-| +.. +...++-+..+.+ .++=+-.+|+..+.=.+ .+ T Consensus 20 ~vpp~~~~~~~~i~~g~------~g~~v~~~g~-~~~-----~n~~eLI~~YR~ma~~pEVd~Av~eIVneaIv~d~~~~ 87 (564) T protein:vir:10 20 PVPPNDEASVSTVAGGY------FGTYVDTSGG-QNS-----RNEYELIRRYRDMSLHPEVDSAIDEIVNEFVVNDGDDK 87 (564) T ss_pred cccCCcCCChhhhhccc------cceeeecccc-cch-----hhHHHHHHHHHHHhhccchhhHHHHhhcceeEecCCCc Confidence 44333332222221110 0000111111 000 0111111111111 12222333333322221 23 Q ss_pred CcccCCC-------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC----CCCceEEEEEccceEEEEee Q lcl|Aclame:pro 75 GITVGGS-------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR----DDGTATITADSPETMVVSVD 143 (456) Q Consensus 75 ~~~~~~~-------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~----~~g~~~i~~~~p~~~~~i~d 143 (456) ||.+.-+ -.+....++..++.--+|+....+..+...+.|+-|.|.-.| .+|-..++.++|+.+-.++- T Consensus 88 pV~vdL~~~~~s~siK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fHkiid~~~pk~GI~eLr~lDPr~i~~vr~ 167 (564) T protein:vir:10 88 PVEVDLQNLEIGSGVKKKIRDEFNRILRMMNFNVNAHEIIRNWYVDGRSHYHKVIDLDNPKKGILELRYIDSLKIRKVRQ 167 (564) T ss_pred eEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEeeCCChhhhhhhhhhhcccceeeeee Confidence 4443211 112234456667766788999999999999999999997654 34656789999999888874 Q ss_pred CCCCc--eeEEEEEEEEe--cCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe- Q lcl|Aclame:pro 144 PLQPW--RIRAAMRWWRD--LDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY- 218 (456) Q Consensus 144 ~~~~~--~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~- 218 (456) ..+.. .-..+++-+.. ..+......+|.+... .....++... ....++....++.. -|+|. T Consensus 168 i~~~~~~~~~~v~k~~~~~~~y~~~~Eyy~Ynp~~~---~g~~~~~~~~----~~~~~~~~ikI~~d-------aI~y~h 233 (564) T protein:vir:10 168 KLKDVDPNRKEIEKGTALQYDYGDFIEYYIYNPKGF---AGNIPMVTGS----MDWSNQEGIKIASD-------AIAQST 233 (564) T ss_pred eccccccccceeeeeeeeeccccccccceeeccccc---cCcccccccc----cccccccceeechh-------hcceec Confidence 33211 11111111111 1112223334433211 0000000000 00000000000000 11111 Q ss_pred ------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhhhhhhhhccce--- Q lcl|Aclame:pro 219 ------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYASIFEAAPGAL--- 288 (456) Q Consensus 219 ------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~~~~~~~~~~~--- 288 (456) ++..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... =+ ........+++ T Consensus 234 SGL~d~~~~~i~gyLhkAIKp~NQL-kmlEDAlVIYRitRAPeRRvFYIDVGnLPk~KAeq-Yl--r~iM~k~KNklVYD 309 (564) T protein:vir:10 234 SGLMDLNKKMTLSFLHKAIKSLNQL-RMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQ-YL--RDVMSRYRNKLVYD 309 (564) T ss_pred ccceeCCCCceeccchhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--HHHHHhcCceEEEe Confidence 1111123333322221111 12222222222222222211100000 00000000 00 00000011111 Q ss_pred -------------------eec----CCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc--cc-hHHHH Q lcl|Aclame:pro 289 -------------------WEL----PPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA--NQ-SAEGA 342 (456) Q Consensus 289 -------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~--n~-Sg~Al 342 (456) |.- ..+..+..++...--+-++-++-+.+.++...++|..-+....+ |. -+..| T Consensus 310 a~TGevrddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~~EI 389 (564) T protein:vir:10 310 GQTGEIRDDKKHMSMLEDFWLPRREGGRGTEITTLPGGQNLGELKDVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKSTEI 389 (564) T ss_pred ccCceecccchhhhhHhhhcccccCCCcccceeeccccCCcchHHHHHHHHHHHHHHhCCCcccccCCCceeecccccch Confidence 110 11122223332221112333555566778888999887764421 32 23345 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHHH-------HHHHH-- Q lcl|Aclame:pro 343 HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYSA-------ASLAK-- 406 (456) Q Consensus 343 ~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad~-------~~kl~-- 406 (456) ---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++. +..+. T Consensus 390 tRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpy 469 (564) T protein:vir:10 390 LRDELKFTKFIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPF 469 (564) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhh Confidence 5556666677888999999999999887666666421 1357788866544444333332 22221 Q ss_pred hcCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhccc------cc--------ccCCCCC Q lcl|Aclame:pro 407 AAGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPV------QR--------PQEDGSR 456 (456) Q Consensus 407 ~~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~------~~--------~~~~Gs~ 456 (456) -...+|.+++++ .|.+++++++++..+.++|.-....-.|. +. |...|.+ T Consensus 470 vGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~~~~~~~~~p~~~~~~ 534 (564) T protein:vir:10 470 VGKYFSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDMEKQNQAFAPELQAAQ 534 (564) T ss_pred hccccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCccCCCCcCCcchhhhc Confidence 112469998865 78999988887665544443222211110 11 1111221 No 241 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=96.77 E-value=0.00035 Score=39.54 Aligned_cols=418 Identities=11% Similarity=0.037 Sum_probs=160.2 Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC------C Q lcl|Aclame:pro 6 PAEWLPVLTKRIDDG----MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN------G 75 (456) Q Consensus 6 ~~~~~~~l~~~~~~~----~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~------~ 75 (456) =.+.++...+.+..+ ..+.+.+.+|..-. +.......-...+.++..+-+...++.+++.|.+- | T Consensus 1 m~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~-----~~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltpp~~~ 75 (555) T protein:vir:17 1 MKHSAQAKYMMLRADREDYLDSGRQSARLTLPY-----ILTDEGHVQGGYLPTPWQSVGSKGVNVLASKLMLSLFPVNTS 75 (555) T ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-----ccCCCCCcccccccccccccHHHHHHHHHHHHHHhhcCCCCc Confidence 111122223333222 23344445553221 11110011111223455566777788887777643 2 Q ss_pred -cccCCCc--------cccHHH-----------HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEcc Q lcl|Aclame:pro 76 -ITVGGSA--------DSDLAL-----------RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSP 135 (456) Q Consensus 76 -~~~~~~~--------d~~~~~-----------~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p 135 (456) |++...+ +.+... .+...+..++|.....++.++...+|.+-++ .++++ +++++- T Consensus 76 WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly--~~~~~---~~~~pl 150 (555) T protein:vir:17 76 FFKLQINDAEIDNLGMDEQARSEIDLSLSRIERIVTQDIAESSDRVHLEMAMKHLIVTGNALLY--QGKKN---LKLYPL 150 (555) T ss_pred ccccccCHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEE--ecCCc---eeEEEc Confidence 2332211 111111 2334455678999999999999999998654 45554 445554 Q ss_pred ceEEEEeeCCCCceeEEEEEEEEec-------CCce---------------eEEE---------EEeCCe--EEEEEEcc Q lcl|Aclame:pro 136 ETMVVSVDPLQPWRIRAAMRWWRDL-------DAES---------------DFAI---------VWSGDG--WQKFARPC 182 (456) Q Consensus 136 ~~~~~i~d~~~~~~~~~~i~~~~~~-------~~~~---------------~~~~---------~~~~~~--~~~~~~~~ 182 (456) .+..+-.| ..+ .+..++|.++-. .+.. .... -+.+.. +|+... T Consensus 151 ~~y~v~~d-~~G-~vd~v~rk~~~t~~ql~~~fg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~t~~~-- 226 (555) T protein:vir:17 151 DRFVVSRD-GEG-NVMEIVTEEQIDRSLLPEEFQKVGGLEGAPDSNAVGEDGPKMGVTAPGGRDKGKSNDALVYTYVC-- 226 (555) T ss_pred CeEEEeeC-CCc-CeeEEEeeeeecHHHHHHHhhhccccchhhhhhhccccchhhhhhhhcccccCCCcceeEeeccc-- Confidence 55444444 333 444455443310 0100 0000 000000 000000 Q ss_pred cccccccceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH Q lcl|Aclame:pro 183 FVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQR 256 (456) Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~ 256 (456) .......+.. ...+........+..+.-+|++.+ .+..|.|-.+..++.+..+|...-.....++....|.. T Consensus 227 -~~~~~~~~~~-e~~~~~v~~~l~e~g~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~ 304 (555) T protein:vir:17 227 -RKDGQVKWHQ-ECDGKVIPGSNSSAPYTHNPWIPLRFNIVDGEAYGRGRVEEFMGDLKSLEALSQAMVEGSAASAKVVF 304 (555) T ss_pred -ccCCeeEEEE-ecCceeccccccccCcccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCce Confidence 0000000000 011110000011222223343322 24578998899999999999887778888888777764 Q ss_pred hhcCCCccccccccchhhhhhhhhhhhhccceeecCCC-cceeecc-ccchH---HHHHHHHHHHHHHHhhcCCChhhhc Q lcl|Aclame:pro 257 ALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG-VDIWESQ-ANDFT---PMLSAIKEHIRQLSSATKTPLPMLM 331 (456) Q Consensus 257 ~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~---~~~~~~~~~~~~i~~~t~~p~~~~~ 331 (456) .+.- + + ..++ ......+.|.+....++ ....++. ..+++ ..++.++.-+++.+...+. T Consensus 305 lv~~-~-g------~~~~---~~l~~~~~g~v~~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~aFm~~~~------ 367 (555) T protein:vir:17 305 MVSP-S-A------TTKP---QNLALAANGAIIQGRPDDVSVVQANKAADFRTVLEMIQKLEQRISDAFLMLQV------ 367 (555) T ss_pred eecc-c-c------ccCc---ceeecCCCceeecCCcccceeeeccccchhhHHHHHHHHHHHHHHHHHhhcCC------ Confidence 4420 0 0 0001 11111122222222222 2222222 12333 3344444444444332221 Q ss_pred cccccchHHHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHhcCCC--ccccceEEecCCCC-CCHHHHH---- Q lcl|Aclame:pro 332 PDSANQSAEGAHNIEKGFLFKCED----RL-SIAKIGLEAILVKALQIEGES--VEDTVDVSFESPDR-VTLGEKY---- 399 (456) Q Consensus 332 ~~~~n~Sg~Al~~~~~~l~~k~~~----~~-~~f~~~l~~~~~l~~~~~g~~--~~~~i~v~f~~~~~-~~~~e~a---- 399 (456) .+..+.++.-++.....+.....- .+ ..+.+-+.+++.++.+..-.+ ...-+.+...-+.. ....+.+ T Consensus 368 ~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~~v~~~i~~~l~~l~r~~~~~~l~ 447 (555) T protein:vir:17 368 RQSERTTATEVQATVQELNEQIGGIYSNLTTELLQPYLARKLHLLQKQRKLPQLPKDLVQPTVVAGLWGVGRGQDKQQLM 447 (555) T ss_pred CCcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHhhhccceeehHHHHHHHHHHHHHH Confidence 233345666655554444443322 22 333444555555554422111 11122332221110 0011111 Q ss_pred HHHHHHHhcCCC-------cH----HHHHHhCCCC-------ccHHHHHHHHHHHHHHHHH----hhcccc--------- Q lcl|Aclame:pro 400 SAASLAKAAGES-------WA----SIRRNILNYN-------ADQIKQDDLDRAREQITLF----AGNPVQ--------- 448 (456) Q Consensus 400 d~~~kl~~~g~~-------s~----~t~~~~~~~~-------~~~~~~~e~~~~~e~~~~~----~~~~~~--------- 448 (456) ..+..+.+.+-+ .- ......+|++ +++++++.+++++++..+. +....+ T Consensus 448 ~~~~~laq~~~~p~~~d~id~d~~~~~~a~~~Gv~p~~ivrs~eev~~~rq~~~~~~~q~~~~~qa~~~~~~~~~~~~~~ 527 (555) T protein:vir:17 448 EFITTLAQTMGPEIAMKYINPTEFIKRLAAAQGIDTLQLINSPETMKQLGDQQKQDMVQASLINQAGQLAKTPMAEQAMQ 527 (555) T ss_pred HHHHHHHhhcCchhHhhcCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHh Confidence 222222222111 11 1223456763 3444444333332221111 011101 Q ss_pred cccCCCCC Q lcl|Aclame:pro 449 RPQEDGSR 456 (456) Q Consensus 449 ~~~~~Gs~ 456 (456) ....+|.. T Consensus 528 ~~~~~~~~ 535 (555) T protein:vir:17 528 LIQQQQEG 535 (555) T ss_pred ccccchhh Confidence 11111111 No 242 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=96.77 E-value=0.00035 Score=39.51 Aligned_cols=345 Identities=8% Similarity=-0.084 Sum_probs=138.3 Q ss_pred HHHHHHHHHHhhccCcccccCcccchhhhhhhhhh--cCChHHHHHHHHHHhhhcCCcccCCCcc-----c----cHHHH Q lcl|Aclame:pro 21 MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA--RTNWGLMVRDSVADRIIPNGITVGGSAD-----S----DLALR 89 (456) Q Consensus 21 ~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~--~~n~~~~iVd~~~~~l~g~~~~~~~~~d-----~----~~~~~ 89 (456) ..-+.+...+-.+.-. ........ .....+ .......+|+..++-+..-|+.+-...+ . -.... T Consensus 1 Mg~f~~~~~f~~~~~~---~~~~~~~~--~~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLN---NDTQRVTA--WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) T ss_pred CccchhhhhhhccccC---CCcceeee--cccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccccccccccccccch Confidence 1111111111001000 00000000 000001 1124556677777777777775411100 0 11223 Q ss_pred HHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEEEe-CCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCc Q lcl|Aclame:pro 90 ARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTCWR-RDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAE 163 (456) Q Consensus 90 l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v~~-~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~ 163 (456) +..++.. |. -..+...++...+.+|.||+++-. +..|++.... | + +. T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~--~-------~------------------~~ 128 (378) T protein:vir:93 76 LDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLL--F-------A------------------DD 128 (378) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEE--e-------c------------------CC Confidence 5555542 32 235556788889999999986533 3333221110 0 0 00 Q ss_pred eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCC-CchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 164 SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDG-MGEVEPHIDIINRINRAEL 242 (456) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~-~s~~~~v~~liD~~~~~~s 242 (456) . ..|.++.+.|+ +++.. .....++..+.+.++..++ T Consensus 129 ~---~~~~~~diih~----------------------------------------r~~~~~~~~~s~l~~~~~~i~~~~~ 165 (378) T protein:vir:93 129 K---KEYKTEELVRL----------------------------------------TSPFYINEDTSILDNALASIQTKLE 165 (378) T ss_pred e---eEeccceeEEe----------------------------------------cCccccchhhHHHHHHHHHHHHHHh Confidence 0 01112222222 22111 1111122223333322111 Q ss_pred HHHHHHHHHhhhHHhhcCCCccccccccchhh-hhh-hhhhh-----hhccceeecCCCcceeeccccchHHHHHHHHHH Q lcl|Aclame:pro 243 QLLSTMAIQAFRQRALKSTEHGLPNVDENGNA-IDY-ASIFE-----AAPGALWELPPGVDIWESQANDFTPMLSAIKEH 315 (456) Q Consensus 243 ~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~-~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (456) + +.+.-++.-. . ...++.... ... ...++ ...+.+..++.+.++.++...+...-.+.++.. T Consensus 166 ~--------~~~~g~l~~~--~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~~~~~~~ 234 (378) T protein:vir:93 166 Q--------GKLRGLLKIN--A-FLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLI 234 (378) T ss_pred c--------CcccceeeeC--C-cCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhHHHHHHH Confidence 1 1111111100 0 001111111 100 01111 133457778888888776543332223556777 Q ss_pred HHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cceEEecCCCCC Q lcl|Aclame:pro 316 IRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVED--TVDVSFESPDRV 393 (456) Q Consensus 316 ~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~--~i~v~f~~~~~~ 393 (456) ..+||.+-++|+..+.+.. .....+.+....|.-.+...+..+...|-.- .-+-.|..... .+.+.+....-. T Consensus 235 ~~~Ia~~fgVPp~~l~g~~--~e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~---~er~~~~~~~~~~~~~fd~~~l~~~ 309 (378) T protein:vir:93 235 KSELLTGYFMNENILLGTA--TQEQQIYFYNSTIIPLLIQLEKELTYKLIST---NRRRVVKGNLYYERIIVDNQLFKFA 309 (378) T ss_pred HHHHHHHhCCCHHHhcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHhhhhhhcccccceeeccchhhhc Confidence 8899999999998885421 1122222222222222222222221111000 00011211222 344445556678 Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-----HHHHHHHHHHHHHhhcccccccCC-CCC Q lcl|Aclame:pro 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-----DDLDRAREQITLFAGNPVQRPQED-GSR 456 (456) Q Consensus 394 ~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-----~e~~~~~e~~~~~~~~~~~~~~~~-Gs~ 456 (456) |..+.++++.+++.+|+++.-.+++.+|+.|.+--+ ....................++++ ..| T Consensus 310 d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:93 310 TLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccccccccchhhhcCccCCCCCCCCCCCC Confidence 889999999999999999999999999987642211 001111111111111111222222 222 No 243 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=96.74 E-value=0.00037 Score=39.39 Aligned_cols=345 Identities=9% Similarity=-0.065 Sum_probs=139.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhh-hhhhhcCChHHHHHHHHHHhhhcCCcccCC--Ccc Q lcl|Aclame:pro 7 AEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRS-FQREARTNWGLMVRDSVADRIIPNGITVGG--SAD 83 (456) Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~-~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~--~~d 83 (456) +-++ .++..+....-..-..+-.. ..+. .. ........+|+..++-+..-|+.+-- ..+ T Consensus 1 M~if--------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~ 62 (378) T protein:vir:94 1 MNLF--------------GKVVSFSRGKLNNDTQRVTA--WQNEAVE--YTSAFVTNIHNKIANEITKVEFNHVKYKKSD 62 (378) T ss_pred Cchh--------------HHhHhhhhcccccCcceeee--eecchhh--hhhHHHHHHHHHHHHhHhhCceeeeeecccc Confidence 1122 22222221111000000000 0000 00 11124566788888877777774311 000 Q ss_pred -------ccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEE-EEeCCCCceEEEEEccceEEEEeeCCCCcee Q lcl|Aclame:pro 84 -------SDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLT-CWRRDDGTATITADSPETMVVSVDPLQPWRI 150 (456) Q Consensus 84 -------~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~-v~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~ 150 (456) ......+..++.. | .-..+...+...++..|.||++ ++.+.+|++.... T Consensus 63 ~~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~------------------ 124 (378) T protein:vir:94 63 VGSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLL------------------ 124 (378) T ss_pred cccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEE------------------ Confidence 0112234455543 2 2234556678889999999986 4454444332110 Q ss_pred EEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHH Q lcl|Aclame:pro 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPH 230 (456) Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v 230 (456) +. .++ . .|.++.+. |++++...+.+... T Consensus 125 ------~~-~~~-~----~~~~~dvi----------------------------------------h~~~~~~~~~~~~~ 152 (378) T protein:vir:94 125 ------FA-NDK-K----EYKPEELV----------------------------------------RLTSPFYINEDTSI 152 (378) T ss_pred ------Ee-cCc-E----Eechhcee----------------------------------------eecCcCCcccchhH Confidence 00 000 0 01111111 22222222221111 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccch--hhhhh-hhhh-----hhhccceeecCCCcceeecc Q lcl|Aclame:pro 231 -IDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENG--NAIDY-ASIF-----EAAPGALWELPPGVDIWESQ 301 (456) Q Consensus 231 -~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g--~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~ 301 (456) -.+.++++..+.. +.+.-++.- . -..+++. ..... ...+ ....+.+..++.+.++.++. T Consensus 153 ~~~~~~~~~~~~~~--------~~~~g~l~~-~---~~l~~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~ 220 (378) T protein:vir:94 153 LDNALASIQTKLEQ--------GKLRGLLKI-N---AFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELK 220 (378) T ss_pred HHHHHHHHHHHHhh--------CCcccceee-C---CcCCHHHHHHHHHHHHHHHHHhhcccccccceeccCCceEEEcc Confidence 1112222211110 111111110 0 0111111 11000 0111 12234577788888887765 Q ss_pred ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc Q lcl|Aclame:pro 302 ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVED 381 (456) Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~ 381 (456) ..+...-.+.++.+..+||..-++|++.+.+..+ ....+.+....|.-.+...+..+...|-.-- -...|..... T Consensus 221 ~~~~~~~~~~~~~~~~~Ia~~fgvPp~~l~g~~~--e~~~~~f~~~tl~P~~~~ie~~l~~~Ll~~~---e~~~g~~~~~ 295 (378) T protein:vir:94 221 KDYSVLNKDEIDLIKSELLTGYFMNENILLGTAT--QEQQIYFYNSTIIPLLIQLEKELTYKLISTN---RRRVVKGNLY 295 (378) T ss_pred CChHHhhHHHHHHHHHHHHHHhCCCHHHhcCCch--HHHHHHHHHHHHHHHHHHHHHHHHhhcCChh---Hhhhhhhhcc Confidence 3332211355677788999999999988864322 2222333333333333332222222210000 0012222222 Q ss_pred --cceEEecCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHH-HHH----HHHHHHHHHHHHhhccccccc-CC Q lcl|Aclame:pro 382 --TVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI-KQD----DLDRAREQITLFAGNPVQRPQ-ED 453 (456) Q Consensus 382 --~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~-~~~----e~~~~~e~~~~~~~~~~~~~~-~~ 453 (456) .+.+.+..-.-.+..+.++++.++.+.|+++.-.+++.+|+.|-+- ++. .............+.....++ ++ T Consensus 296 ~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~NE~R~~~g~~p~~ggd~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~ 375 (378) T protein:vir:94 296 YERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGNRKDVTSTDET 375 (378) T ss_pred cceeEeecchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccchhcchhcccccCCCCCCCCC Confidence 2344445566788899999999999999999999999999876321 100 000000000001111111122 22 Q ss_pred CCC Q lcl|Aclame:pro 454 GSR 456 (456) Q Consensus 454 Gs~ 456 (456) -.+ T Consensus 376 ~n~ 378 (378) T protein:vir:94 376 NNQ 378 (378) T ss_pred CCC Confidence 222 No 244 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=96.63 E-value=0.00045 Score=38.91 Aligned_cols=424 Identities=10% Similarity=0.062 Sum_probs=173.6 Q ss_pred CCCCCHHHHHHHHHHHHHH-HHH-------------------HHHHHHHHhhccCcccccCcccchhhhhhhhhh-cCCh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDD-GMS-------------------RVRLLARYSNGDAPLPELTRNTSAAWRSFQREA-RTNW 59 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~-~~~-------------------~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~-~~n~ 59 (456) -...++...-+.+.+.... -.| ..-...++|-|-.. ..+...++-+..+.+ .++= T Consensus 12 ~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~----~~~~~~eLI~~YR~ma~~pE 87 (523) T protein:vir:68 12 WAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEP----GLKSTRELIDTYRNLMTNYE 87 (523) T ss_pred hhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhcccc----ccchHHHHHHHHHHHhhccc Confidence 1111111111111011100 000 11112222222100 001111111111111 1222 Q ss_pred HHHHHHHHHHhh-----hcCCcccCCCc-------cccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC--- Q lcl|Aclame:pro 60 GLMVRDSVADRI-----IPNGITVGGSA-------DSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD--- 124 (456) Q Consensus 60 ~~~iVd~~~~~l-----~g~~~~~~~~~-------d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~--- 124 (456) +-.+|+..+.=. ..+||.+.-+. .+....++..++.--+|+....+..+...+.|+-|.|...|. T Consensus 88 vd~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~p 167 (523) T protein:vir:68 88 VDNAVSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKRP 167 (523) T ss_pred hhhHHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhheeeeEEEEEEEeeCCCc Confidence 233333332222 23344442211 122344566677667889999999999999999999987763 Q ss_pred -CCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccccc Q lcl|Aclame:pro 125 -DGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPV 203 (456) Q Consensus 125 -~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (456) +|-..++.++|+.+-.+.--.+..+ ..+.+ ........+|.+.... +...+... ..+....+ T Consensus 168 k~GI~Elr~lDPr~i~~vr~i~~~~~--~g~~v----i~~~~e~f~Y~~~~~~-~~~~g~~~----------~~~~~ikI 230 (523) T protein:vir:68 168 KEGIKELRRLDPRQVQYVREVITTTE--AGVKI----VKGYKEYFIYDTSHES-YACDGRIY----------EAGTKIKI 230 (523) T ss_pred cccceeeeeeCCcceeEEEeecCCCC--cchhh----hhhhhhheeecccccc-cccccccc----------CCCcceec Confidence 4767789999997755542111100 00001 1122233445443311 10000000 00111101 Q ss_pred ccccccCceeEEEEec-------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchh-- Q lcl|Aclame:pro 204 GDAVVTGSPPPVVVYQ-------NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGN-- 273 (456) Q Consensus 204 ~~~~~~~~~~pv~~~~-------n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~-- 273 (456) +.. -|+|.. +..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+......- T Consensus 231 ~~d-------AI~y~hSGL~d~~~~~i~gyLhkAiKp~NQL-kmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~ 302 (523) T protein:vir:68 231 PKA-------AIVYAHSGLVDCCGKNIIGYLHRAIKPANQL-KLLEDAVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQ 302 (523) T ss_pred chh-------heeeeeccceeCCCCceeccchhhhHHHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHH Confidence 000 012211 111123333322211111 12222222222222222211100000 000000000 Q ss_pred hh----hhhhhhhhhccc-------------eee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcc Q lcl|Aclame:pro 274 AI----DYASIFEAAPGA-------------LWE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMP 332 (456) Q Consensus 274 ~~----~~~~~~~~~~~~-------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~ 332 (456) -+ ...-+.++..|. .|. ...+..+..++...--+-++-++-+.+.++...++|..-+.. T Consensus 303 ~im~k~kNKlvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~ 382 (523) T protein:vir:68 303 HVMNTMKNRIAYDATTGKIKNQQHIMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNMEDVRWFRNALYMALRIPITRIPS 382 (523) T ss_pred HHHHhhcceeEEeccCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCcceeecC Confidence 00 000000000010 011 011222333333321122334555666788888999877743 Q ss_pred ccc--cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHH-- Q lcl|Aclame:pro 333 DSA--NQ-SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYS-- 400 (456) Q Consensus 333 ~~~--n~-Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad-- 400 (456) ..+ |. -+..|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++ T Consensus 383 ~~~~f~~Gr~~EItRDEikF~KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil 462 (523) T protein:vir:68 383 DQGGIQFDAGTSITRDELSFGKFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSELKDAEIL 462 (523) T ss_pred CCcceecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHH Confidence 322 22 233555666667777888999999999999887666666421 135778886654444433333 Q ss_pred -----HHHHHHh--cCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 401 -----AASLAKA--AGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 401 -----~~~kl~~--~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ++..+.. +..+|.+++.+ .|.+++++++++..+.++|.-.....++.+.. +|= T Consensus 463 ~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~e~-~~f 523 (523) T protein:vir:68 463 ERRINMLQMAEPFIGKYISHRTAMKDILQMSDEEIEQEAKQIEEESKEARFQDPDQEQ-EDF 523 (523) T ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhh-hcC Confidence 3332221 12469988865 78999998888776655554433333332221 222 No 245 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=96.53 E-value=0.00054 Score=38.50 Aligned_cols=393 Identities=12% Similarity=0.020 Sum_probs=170.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-ccCcccchhhhhhhhhh--cCChHHHHHHHHHHhhhcCCcc Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP-ELTRNTSAAWRSFQREA--RTNWGLMVRDSVADRIIPNGIT 77 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~-~~~~~~~~~~~~~~~k~--~~n~~~~iVd~~~~~l~g~~~~ 77 (456) =++-||+ +.+++.- .........-|. +.-.++ ..+......+. ....+ ......-.+++.-.-+.+-+++ T Consensus 6 ~~~p~~~-~~~~~~~----~~~~~~~~~g~~-~~D~~lr~~gg~~~~~~~-l~~~m~e~D~~v~s~l~~Rk~av~~~~w~ 78 (446) T protein:vir:98 6 RNAPTPA-IRRRTIY----AMEHLGLATSYL-SEDGGYKRAGKPTYQQLS-AWDEAAQTEPIIAQGLDSIALSVLNKVGP 78 (446) T ss_pred cCCCchh-hhhhhhh----ccccchhhcccC-CcchHhhhcCCChHHHHH-HHHHHHhcchHHHHHHHHHHHHhhcCCce Confidence 1256665 3333321 122222223333 211111 11211111111 11111 2456666777777777888888 Q ss_pred cCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeE-EEEEeCCCCceEE-E------EEccceEEEEeeCCCCce Q lcl|Aclame:pro 78 VGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESY-LTCWRRDDGTATI-T------ADSPETMVVSVDPLQPWR 149 (456) Q Consensus 78 ~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~-~~v~~~~~g~~~i-~------~~~p~~~~~i~d~~~~~~ 149 (456) +.. .+++..+.+.+.+..-+++..... +.+++.||.+. +++|.-.+|.-.. + ...|...--.+|.... . T Consensus 79 V~p-~~~~~a~~v~~~l~~~~~~~~~~~-~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~~~~~~~~-~ 155 (446) T protein:vir:98 79 YQH-GDKRIKKFIDDQLRNRAKTWISHC-VKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVMLIANDNGR-I 155 (446) T ss_pred ecC-ccHHHHHHHHHHHhhcCchhHHHH-HHHHHhhCceeeeEEEeecccccccchhhccccccccccceeeeccCCc-c Confidence 864 455666677888876666655554 56888899875 5777654442211 1 1111111111111110 0 Q ss_pred eEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeE---EEEe-----cCC Q lcl|Aclame:pro 150 IRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPP---VVVY-----QNP 221 (456) Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---v~~~-----~n~ 221 (456) +. +.......+....+. .............. ...+ +....|+ +++. .|+ T Consensus 156 ~~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~g---------~~~~iP~~kfi~~~~~~~~~~p 212 (446) T protein:vir:98 156 VD----------GDTVTASQYKSGYWV---PLPPYRIGDPPKKV-DVVG---------SHVRLPSHKRLFINYNTKGNNP 212 (446) T ss_pred cc----------ccccchhhccccccc---Ccccchhhhhhhhc-ccCc---------ccccccccceEEEEecCCCCCc Confidence 00 000000000000000 00000000000000 0000 0001111 2221 367 Q ss_pred CCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhhHHhhcC---CCccccccccchhhhhh---------hhhhhhhccc Q lcl|Aclame:pro 222 DGMGEVEPHID--IINRINRAELQLLSTMAIQAFRQRALKS---TEHGLPNVDENGNAIDY---------ASIFEAAPGA 287 (456) Q Consensus 222 ~~~s~~~~v~~--liD~~~~~~s~~~~~~~~~~~~~~~i~G---~~~~~~~~d~~g~~~~~---------~~~~~~~~~~ 287 (456) .|.|.+..+-- +.. +..+-+.+...+-|..|.++.+- ....+. .+.++....+ ......+.+. T Consensus 213 ~G~gLlr~~~w~~~fK--~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~-~~~~~~~~~~~~~~~L~~av~~~~~da~~ 289 (446) T protein:vir:98 213 WGTSCLTSVLDYSIFK--RAFRDMMLIALDRYGTPLIYVIVPPGNTGVVE-EAPDGTEITTTIAEQAEDALRRLSTDSGL 289 (446) T ss_pred cccchHHHHHHHHHHH--HhhHHHHHHHHhHcCCceeEEeecCCCCcccc-cchhHHHHHHHHHHHHHHHHHhcccccee Confidence 78887766432 333 33466677778899999877652 222111 1111111111 1111111122 Q ss_pred ee---ecCCCcceeec--cccchHHHHHHHHHHHHHHHhhcCCChhhhccccc-cchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 288 LW---ELPPGVDIWES--QANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQSAEGAHNIEKGFLFKCEDRLSIAK 361 (456) Q Consensus 288 ~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~Sg~Al~~~~~~l~~k~~~~~~~f~ 361 (456) +. ..|.+.++... .......|...++.+-++|++..-.....++...+ +.|...-.....-....++.-.+.+. T Consensus 290 ii~~~~~P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~V~~d~~~aDa~~i~ 369 (446) T protein:vir:98 290 VLTQLSKEQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLELFDGKINSIFDTVI 369 (446) T ss_pred eeecccCCCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH Confidence 21 12445444322 22222357777777778888765433333332211 12221111222222223333445566 Q ss_pred HHHH-HHHHHHHHhcCCCccccc-----eEEecCCCCCCHHHHHHHHHHHHhcCCC---cHHHHHHhCCCCccHHHH Q lcl|Aclame:pro 362 IGLE-AILVKALQIEGESVEDTV-----DVSFESPDRVTLGEKYSAASLAKAAGES---WASIRRNILNYNADQIKQ 429 (456) Q Consensus 362 ~~l~-~~~~l~~~~~g~~~~~~i-----~v~f~~~~~~~~~e~ad~~~kl~~~g~~---s~~t~~~~~~~~~~~~~~ 429 (456) ..+. ++++-++.+.+....... .+.|....+.+....++++.+|++.|+. +.+.+++.+|+.+.+..- T Consensus 370 ~tln~~Li~~l~~lNf~~~~~~~~~~~~~~~~~~~e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 370 HAFTEQVIGNLIRLNFDPALYPLASNTGYITRLPGRATDLAALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAISST 446 (446) T ss_pred HHHHHHHHHHHHHhCCCccccccccccccceeccCChhhHHHHHHHHHHHHhCCccccccHHHHHHHhCcCCCCCCC Confidence 6664 466666666654332222 2445556788889999999999999973 345577777765321111 No 246 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=96.50 E-value=0.00056 Score=38.39 Aligned_cols=428 Identities=12% Similarity=0.060 Sum_probs=177.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--H-----HHHhhccCcccc-----------------c--Ccccchhhhhhhhh Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRL--L-----ARYSNGDAPLPE-----------------L--TRNTSAAWRSFQRE 54 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~--~-----~~YY~g~~~i~~-----------------~--~~~~~~~~~~~~~k 54 (456) |-.. -.++++.-++.-+.......+ . -...+|-..|.. . ......++-+..+. T Consensus 1 m~~~-~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~YR~ 79 (521) T protein:vir:10 1 MNPI-FLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQYRS 79 (521) T ss_pred CCcc-hhHHhhhhhhhhhhHHhhhhccCccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHHHH Confidence 4331 122222222211111000000 0 112222211100 0 00011111122222 Q ss_pred h-cCChHHHHHHHHHHhhh-----cCCcccCCCcc-------ccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEE Q lcl|Aclame:pro 55 A-RTNWGLMVRDSVADRII-----PNGITVGGSAD-------SDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCW 121 (456) Q Consensus 55 ~-~~n~~~~iVd~~~~~l~-----g~~~~~~~~~d-------~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~ 121 (456) + .++=+-.+|+..+.=.+ .+||.+.-+.- +....++..++.--+|+....+..+...+.|+-|.|.- T Consensus 80 ma~~pEvd~Av~eIvneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHki 159 (521) T protein:vir:10 80 LSKYHEVDNAIDEIINDAIVQEDNRDTVYLDLDKTDWNESVKEMVREEFRTILKLLKFEREGKRHFRRWYVDSRIYFHKM 159 (521) T ss_pred HhhccchhhHHHhhhcceEEecCCCceEEEEecCcccchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeeEEEEEE Confidence 2 22333444444433322 33444422110 11344556666666889999999999999999999975 Q ss_pred eC----CCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCC Q lcl|Aclame:pro 122 RR----DDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRIS 197 (456) Q Consensus 122 ~~----~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (456) .| .+|-..++.++|+.+-.+.--.... ...+.. ........+|.+.....+...+ .......++.. T Consensus 160 id~~~pk~GI~Elr~lDPr~i~~vr~i~k~~--~~~~~v----~~~~~e~f~Y~~~~~~~~~~~g---~~~~~vkI~~d- 229 (521) T protein:vir:10 160 IDPARPKDGIKELRLLDPRNVEYYRVNLKSN--ENGNDV----YKGVKEFFTYGATEDNRYNISG---NSNNLVQIPID- 229 (521) T ss_pred eeCCCccccceeeeeeCCcceeeeeeecCCC--CCcchh----hccceeeeeeccCCCceecCCC---CCCcceeechh- Confidence 54 3566778999999885554211110 011101 0112334455443222221110 00000000000 Q ss_pred CcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhh Q lcl|Aclame:pro 198 DSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAID 276 (456) Q Consensus 198 ~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~ 276 (456) .+...|.++ +..++..-.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... =+ T Consensus 230 ----aI~y~hSGL-----~d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeq-Yl- 297 (521) T protein:vir:10 230 ----AIVYSHSGK-----VDIDGKTIVGYLHNVIKPANQL-KMLEDAMVIYRITRAPERRVFYIDVGTMPNKKATQ-HL- 297 (521) T ss_pred ----heeeecccc-----eeCCCCceeccchhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH- Confidence 000000000 0112222334444433222222 12222222222222222221100000 00000000 00 Q ss_pred hhhhhhhhccce----------------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhh Q lcl|Aclame:pro 277 YASIFEAAPGAL----------------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPML 330 (456) Q Consensus 277 ~~~~~~~~~~~~----------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~ 330 (456) ........+++ |. ...+..+..++...--+-++-++-+.+.++...++|..-+ T Consensus 298 -~~iM~k~kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEI~TLpggqnlgem~DV~YF~kkLy~aLnVP~sRl 376 (521) T protein:vir:10 298 -NNVMQGLKNRVVYDSSTGKVKNSSNNLAMTEDYWLMRRDGKATTEVSTLPGAQSMGEMDDVRWFNRKLYESMKIPLSRL 376 (521) T ss_pred -HHHHHhcCceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccc Confidence 00000011111 11 0112223333332211223345555667788889998877 Q ss_pred ccccc--c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHH- Q lcl|Aclame:pro 331 MPDSA--N--QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEK- 398 (456) Q Consensus 331 ~~~~~--n--~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~- 398 (456) ....+ | -|+ .|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+... T Consensus 377 ~~e~~~f~~Gr~~-EItRDEikF~KFI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~ 455 (521) T protein:vir:10 377 PQEGAGVTFGAGN-DITRDELQFTKYIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEIKDV 455 (521) T ss_pred CCCCCceeccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHH Confidence 54422 2 233 355566667777888999999999999887666666421 1357788865544333333 Q ss_pred ------HHHHHHHHh---cC-CCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 399 ------YSAASLAKA---AG-ESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 399 ------ad~~~kl~~---~g-~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ++++..+.. .| .+|.+++++ .|.++++++++++.+.++|.-.....++.. +.+|= T Consensus 456 eil~~R~~~l~~~dp~~yvGky~s~dyi~k~ILr~tDeeik~~~k~I~~E~~~~~~~~p~~-e~~df 521 (521) T protein:vir:10 456 EILERRVNLVQTLASAEVTGKYLSHEYVMKNILRMSDEDIKTEREKIDGELKDSVYKNPED-PMEEF 521 (521) T ss_pred HHHHHHHHHHHhhcCccccccccchHHHHHHHhcCCHhHHHHHHHHHHHhhhCCCCCCCcc-hhhcC Confidence 333333322 12 578888865 789999888877766555543322222211 11222 No 247 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=96.49 E-value=0.00057 Score=38.37 Aligned_cols=408 Identities=11% Similarity=0.022 Sum_probs=166.7 Q ss_pred CC-CCCHH---------------HHHHHHHH------HHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCC Q lcl|Aclame:pro 1 MT-ASTPA---------------EWLPVLTK------RIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTN 58 (456) Q Consensus 1 ~~-~~t~~---------------~~~~~l~~------~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n 58 (456) .+ |...+ -+.+.+.. --..-..+|..+..+++-+..+ T Consensus 29 ~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~~~~~~~~~~LI~~YR~ma~~pEvd~Av--------------------- 87 (516) T protein:vir:10 29 IATPKKDDGATEIEAREGESSYNALMQQFFGIDNNISGTKDLINTYRQLTNNPEVERAV--------------------- 87 (516) T ss_pred ccCCCCccCceeeecCcccccccceeeeeecccCccccHHHHHHHHHHhhhccchhHHH--------------------- Confidence 11 11110 00000000 0000112222233332222211 Q ss_pred hHHHHHHHH-HHhhhcCCcccCCC-------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC--CCCce Q lcl|Aclame:pro 59 WGLMVRDSV-ADRIIPNGITVGGS-------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR--DDGTA 128 (456) Q Consensus 59 ~~~~iVd~~-~~~l~g~~~~~~~~-------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~--~~g~~ 128 (456) ..||+.. +.--..+||.+..+ -.+....++..++.--+|+....+..+...+.|+-|.|...| .+|-. T Consensus 88 --~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k~GI~ 165 (516) T protein:vir:10 88 --ANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDKILEEFDEICRLLDASRKLDTLFRRWYIDSRIFFHKIMPNPKEGIV 165 (516) T ss_pred --HHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHHhhhhcceEEEEEEecCccccee Confidence 1111111 11111234443211 112234456666666788999999999999999999996665 35666 Q ss_pred EEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccc Q lcl|Aclame:pro 129 TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVV 208 (456) Q Consensus 129 ~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (456) .++.++|+.+..+.--... ....... ..+..+..+|.++...+... +..........++... +...|. T Consensus 166 elr~lDPr~i~~vR~i~~~--~~~~~~v----~~~~~e~~~Y~~~~~~~~~~-g~~~~~~~~ikI~~da-----I~y~hS 233 (516) T protein:vir:10 166 ELRRLDPRHVEYYREIVTS--DVGGTSV----VKGYREFFVYTTGNEGYAYN-GRLFEPNTRIKIPRSA-----IVYAHS 233 (516) T ss_pred eeeeeCCcceeeEEeeecc--cCcchhh----hhceeeeeeeecCccceecc-ccccCCCCceecchhh-----eeeeec Confidence 7888999988776421100 0000000 01122233443322211110 0000000000000000 000111 Q ss_pred cCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhhhhhhhhccc Q lcl|Aclame:pro 209 TGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYASIFEAAPGA 287 (456) Q Consensus 209 ~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~~~~~~~~~~ 287 (456) ++. ..++..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... =+ ........++ T Consensus 234 Gl~-----d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeq-Yl--~~iM~k~KNk 304 (516) T protein:vir:10 234 GLQ-----DCSDRGIVGYLHNAVKPANQL-KLLEDALVIYRITRAPERRVFYIDVGNMPNRKATE-YV--NGIMQSLKNR 304 (516) T ss_pred Ccc-----cCCCCceeceehhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--HHHHHhcCce Confidence 110 011111123333322211111 12222222222222222221100000 01000000 00 0000111111 Q ss_pred e----------------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc-cc--- Q lcl|Aclame:pro 288 L----------------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA-NQ--- 337 (456) Q Consensus 288 ~----------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~-n~--- 337 (456) + |. ...+..+..++...--+-++-++-+.+.++...++|..-+....+ |. T Consensus 305 lvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~G 384 (516) T protein:vir:10 305 VVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVTSLPGAQTMGEMDDVRWFNKKLYEALRIPLSRMPRDDGGMVIGG 384 (516) T ss_pred eEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeecc Confidence 1 11 011222233333221122334555566788888999888764332 22 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---c----cccceEEecCCCCCCHHHH-------HHHHH Q lcl|Aclame:pro 338 SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES---V----EDTVDVSFESPDRVTLGEK-------YSAAS 403 (456) Q Consensus 338 Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~---~----~~~i~v~f~~~~~~~~~e~-------ad~~~ 403 (456) .+..|---+..+..-+.+++..|..-|.++++.=+-+.|.- + ...|.+.|.....-.+... ++++. T Consensus 385 r~~EItRDEiKF~KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~ 464 (516) T protein:vir:10 385 QDMAITRDELDFRKFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALS 464 (516) T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHH Confidence 33444444555666777888999999988887665556532 1 2357778865544433333 33333 Q ss_pred HHH--hcCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 404 LAK--AAGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 404 kl~--~~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) .+. -+..+|.+++++ .|.++++++++++.+.++|.-.....++.+. ++= T Consensus 465 ~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p~~e--~~f 516 (516) T protein:vir:10 465 QIEPYVGKYVSHDYVMKNILQMTDEQIAQEEKQIEKEANVKRFQNPENE--DDF 516 (516) T ss_pred HhhhhhccccchHHHHHHHhcCCHhHHHHHHHHHHHhhhCCCCCCCCcc--ccC Confidence 332 235689998865 7899999888877665555433332222222 111 No 248 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=96.48 E-value=0.00058 Score=38.33 Aligned_cols=402 Identities=11% Similarity=0.066 Sum_probs=169.1 Q ss_pred CCCCCHHH------H---H-----------HHHH-------HHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhh Q lcl|Aclame:pro 1 MTASTPAE------W---L-----------PVLT-------KRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQR 53 (456) Q Consensus 1 ~~~~t~~~------~---~-----------~~l~-------~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~ 53 (456) .|.-.|.. + . +.+. +--.+...+|+.+..+++-+..+ T Consensus 29 ~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR~ma~~pEvd~Av---------------- 92 (524) T protein:vir:72 29 VSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYRNLMNNYEVDNAV---------------- 92 (524) T ss_pred ccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHHHHhhccchhhHH---------------- Confidence 11111100 0 0 0000 00001111222222222222211 Q ss_pred hhcCChHHHHHHHH-HHhhhcCCcccCCC-------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC- Q lcl|Aclame:pro 54 EARTNWGLMVRDSV-ADRIIPNGITVGGS-------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD- 124 (456) Q Consensus 54 k~~~n~~~~iVd~~-~~~l~g~~~~~~~~-------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~- 124 (456) ..||+.. +.--..+||.+.-+ -.+....++..++.--+|+....+..+...+.|+-|.|...|. T Consensus 93 -------~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k 165 (524) T protein:vir:72 93 -------SEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPK 165 (524) T ss_pred -------HHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCC Confidence 1111111 11111234433221 1122445566677667889999999999999999999987764 Q ss_pred ---CCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccc Q lcl|Aclame:pro 125 ---DGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWV 201 (456) Q Consensus 125 ---~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (456) +|-..++.++|+.+-.+.--.+. ....... ........+|.++.- .+...+... ..+... T Consensus 166 ~pk~GI~Elr~lDPr~i~~vr~i~~~--~~~~~~v----i~~~~e~f~Y~~~~~-~y~~~g~~~----------~~~~~i 228 (524) T protein:vir:72 166 RPKEGIKELRRLDPRQVQYVREIITE--TEAGTKI----VKGYKEYFIYDTAHE-SYACDGRMY----------EAGTKI 228 (524) T ss_pred CccccceeeeeeCCccceeeeeeccC--CCccchh----hcchhhheeeccCcc-ccccCcccc----------CCCcce Confidence 47677899999987555321110 0000000 112223345544321 111000000 001111 Q ss_pred ccccccccCceeEEEEec-------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchh Q lcl|Aclame:pro 202 PVGDAVVTGSPPPVVVYQ-------NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGN 273 (456) Q Consensus 202 ~~~~~~~~~~~~pv~~~~-------n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~ 273 (456) .++.. -|+|.. +..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... T Consensus 229 kI~~d-------AI~y~hSGL~d~~~~~i~gyLhkAiKp~NQL-kmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeq- 299 (524) T protein:vir:72 229 KIPKA-------AVVYAHSGLVDCCGKNIIGYLHRAVKPANQL-KLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAE- 299 (524) T ss_pred ecchh-------heeeeeccceeCCCCceeccchhhhHhHHhh-hHHHhhHHHHhhhccccceEEEEecCCCCchhHHH- Confidence 01000 012211 111123333322211111 12222222222222222211100000 00000000 Q ss_pred hhhhhhhhhhhccce----------------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCCh Q lcl|Aclame:pro 274 AIDYASIFEAAPGAL----------------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPL 327 (456) Q Consensus 274 ~~~~~~~~~~~~~~~----------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~ 327 (456) =+ ........+++ |. ...+..+..++...--+-++-++-+.+.++...++|. T Consensus 300 Yl--~~im~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~ 377 (524) T protein:vir:72 300 HM--QHVMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNMEDIRWFRQALYMALRVPL 377 (524) T ss_pred HH--HHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCch Confidence 00 00001111111 11 0112223333333211223345556667888889998 Q ss_pred hhhcccc-c--cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHH Q lcl|Aclame:pro 328 PMLMPDS-A--NQ-SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLG 396 (456) Q Consensus 328 ~~~~~~~-~--n~-Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~ 396 (456) .-+.... + |. -+..|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+. T Consensus 378 sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~El 457 (524) T protein:vir:72 378 SRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFAEL 457 (524) T ss_pred hhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHH Confidence 8873221 1 21 344555566667777888999999999999887666666421 13577888665444443 Q ss_pred HHHH-------HHHHHHh--cCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 397 EKYS-------AASLAKA--AGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 397 e~ad-------~~~kl~~--~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ..++ ++..+.. +..+|.+++++ .|.+++++++++..+.++|.-.....++.+.. +|= T Consensus 458 Ke~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~-~~f 524 (524) T protein:vir:72 458 KEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKEARFQDPDQEQ-EDF 524 (524) T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhh-hcC Confidence 3333 3332221 12469988865 78999998888776655554433333322221 122 No 249 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=96.46 E-value=0.0006 Score=38.25 Aligned_cols=402 Identities=11% Similarity=0.067 Sum_probs=169.3 Q ss_pred CCCCCHHH------H---H-----------HHHH-------HHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhh Q lcl|Aclame:pro 1 MTASTPAE------W---L-----------PVLT-------KRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQR 53 (456) Q Consensus 1 ~~~~t~~~------~---~-----------~~l~-------~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~ 53 (456) .|.-.|.. + . +.+. +--.+...+|+.+..+++-+..+ T Consensus 29 ~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR~ma~~pEvd~Av---------------- 92 (524) T protein:vir:10 29 VSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYRNLMNNYEVDNAV---------------- 92 (524) T ss_pred ccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHHHHhhccchhhHH---------------- Confidence 11111100 0 0 0000 00001111222222222222211 Q ss_pred hhcCChHHHHHHHH-HHhhhcCCcccCCC-------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC- Q lcl|Aclame:pro 54 EARTNWGLMVRDSV-ADRIIPNGITVGGS-------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD- 124 (456) Q Consensus 54 k~~~n~~~~iVd~~-~~~l~g~~~~~~~~-------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~- 124 (456) ..||+.. +.--..+||.+.-+ -.+....++..++.--+|+....+..+...+.|+-|.|...|. T Consensus 93 -------~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k 165 (524) T protein:vir:10 93 -------SEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFNDVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPK 165 (524) T ss_pred -------HHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEeeCC Confidence 1111111 11111234433221 1122445566677667889999999999999999999987763 Q ss_pred ---CCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccc Q lcl|Aclame:pro 125 ---DGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWV 201 (456) Q Consensus 125 ---~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (456) +|-..++.++|+.+-.+.--.+. ....... ........+|.++.- .+...+... ..+... T Consensus 166 ~pk~GI~Elr~lDPr~i~~vr~i~~~--~~~~~~v----i~~~~e~f~Y~~~~~-~y~~~g~~~----------~~~~~i 228 (524) T protein:vir:10 166 RPKEGIKELRRLDPRQVQYVREIITE--TEAGTKI----VKGYKEYFIYDTAHE-SYACDGRMY----------EAGTKI 228 (524) T ss_pred CccccceeeeeeCCccceeeeeeccC--CCccchh----hcchhhheeeccCcc-ccccCcccc----------CCCcce Confidence 47677899999987555321110 0000000 112223345544321 111000000 001111 Q ss_pred ccccccccCceeEEEEec-------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchh Q lcl|Aclame:pro 202 PVGDAVVTGSPPPVVVYQ-------NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGN 273 (456) Q Consensus 202 ~~~~~~~~~~~~pv~~~~-------n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~ 273 (456) .++.. -|+|.. +..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... T Consensus 229 kI~~d-------AI~y~hSGL~d~~~~~i~gyLhkAiKp~NQL-kmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeq- 299 (524) T protein:vir:10 229 KIPKA-------AIVYAHSGLVDCCGKNIIGYLHRAVKPANQL-KLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAE- 299 (524) T ss_pred ecchh-------heeeeeccceeCCCCceeccchhhhHHHHhh-hHHHhhHHHHhhhccccceEEEEecCCCCchhHHH- Confidence 01000 022211 111123333322211111 12222222222222222211100000 00000000 Q ss_pred hhhhhhhhhhhccce----------------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCCh Q lcl|Aclame:pro 274 AIDYASIFEAAPGAL----------------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPL 327 (456) Q Consensus 274 ~~~~~~~~~~~~~~~----------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~ 327 (456) =+ ........+++ |. ...+..+..++...--+-++-++-+.+.++...++|. T Consensus 300 Yl--~~im~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~ 377 (524) T protein:vir:10 300 HM--QHVMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNMEDVRWFRQALYMALRVPL 377 (524) T ss_pred HH--HHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeeccccCCcChHHHHHHHHHHHHHHhCCch Confidence 00 00001111111 11 0112223333333211223345556667888889998 Q ss_pred hhhcccc-c--cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHH Q lcl|Aclame:pro 328 PMLMPDS-A--NQ-SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLG 396 (456) Q Consensus 328 ~~~~~~~-~--n~-Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~ 396 (456) .-+.... + |. -+..|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+. T Consensus 378 sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~El 457 (524) T protein:vir:10 378 SRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFTEL 457 (524) T ss_pred hhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHH Confidence 8873221 1 21 344555566667777888999999999999887666666421 13577888665444444 Q ss_pred HHHH-------HHHHHHh--cCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 397 EKYS-------AASLAKA--AGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 397 e~ad-------~~~kl~~--~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ..++ ++..+.. +..+|.+++++ .|.+++++++++..+.++|.-.....++.+.. +|= T Consensus 458 Ke~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~-~~f 524 (524) T protein:vir:10 458 KEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKEARFQDPDQEQ-EDF 524 (524) T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCchhh-hcC Confidence 3333 3332221 12469988865 78999998888776655554433333322221 222 No 250 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=96.45 E-value=0.00061 Score=38.19 Aligned_cols=296 Identities=13% Similarity=0.021 Sum_probs=116.6 Q ss_pred eEEEEEeCCCCceEE---EEEccceEE-EEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccce Q lcl|Aclame:pro 116 SYLTCWRRDDGTATI---TADSPETMV-VSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRR 191 (456) Q Consensus 116 a~~~v~~~~~g~~~i---~~~~p~~~~-~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (456) .++++|.-++|...+ ...+|+.+. -.+++... +.. ++.......+. ..+ T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~--l~~-~~~~~~~g~~~--~~l---------------------- 53 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGG--LVA-IEQWGVFGKAT--VRI---------------------- 53 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCc--eeE-EEecCCCCCCc--cee---------------------- Confidence 778888776775443 333333111 11221110 000 00000000000 000 Q ss_pred eeccCCCcccccccccccCceeEEEE---ecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcccccc Q lcl|Aclame:pro 192 LVTRISDSWVPVGDAVVTGSPPPVVV---YQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNV 268 (456) Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~pv~~---~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~ 268 (456) .....+...+ ..|+.|.|.+..+.-..--=+..+.+.+..++-|..++.+.+|........ T Consensus 54 ----------------p~~kfi~~~~~~~~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~ 117 (355) T protein:vir:78 54 ----------------PVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIA 117 (355) T ss_pred ----------------ccCCEEEEEeCCCCCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCccc Confidence 0011111111 135678887776543222123346667777888877877777653321111 Q ss_pred ccc--h--------hhh-hhhhhhhhhccceeecCCCcceeeccc-cchHHHHHHHHHHHHHHHhhcCCChhhhcccccc Q lcl|Aclame:pro 269 DEN--G--------NAI-DYASIFEAAPGALWELPPGVDIWESQA-NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN 336 (456) Q Consensus 269 d~~--g--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n 336 (456) ++. . +.. .-...+..+......++.+.++..+.. .....|...++.+-++|++..--.....++. ++ T Consensus 118 ~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~~iip~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~-~~ 196 (355) T protein:vir:78 118 RDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGD-KS 196 (355) T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhCCcceeEeecCCceEEEeecCCCcccHHHHHHHHHHHHHHHHhhhhhccccC-Cc Confidence 110 0 000 001111122223445666665433221 1222345556666667766442221111111 11 Q ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCCC-cH Q lcl|Aclame:pro 337 QSAEGAH-NIEKGFLFKCEDRLSIAKIGLE-AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGES-WA 413 (456) Q Consensus 337 ~Sg~Al~-~~~~~l~~k~~~~~~~f~~~l~-~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~~-s~ 413 (456) .+.-|+. ....-....++.-.+.+...+. ++++-++.+.......-..+.|... ..+....++++.+|+..|+. +. T Consensus 197 gGS~Alg~vh~~v~~~~~~aD~~~i~~~ln~~li~~l~~lN~~~~~~~P~~~~~~~-~~~~~~~a~~~~~l~~~G~~~~~ 275 (355) T protein:vir:78 197 TGSYALGDTFASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWGPEEPAPRLVPAQL-GKEQPVTAEAIRALVECGAFTAD 275 (355) T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEecCc-ChhHHHHHHHHHHHHhCCCcccc Confidence 1111221 1222233333334455556664 4666666655332332335667543 45566789999999999874 32 Q ss_pred ----HHHHHhCCCCccHHHHHHHHHHHHHH-HH--Hhhcccc-cccCCCCC Q lcl|Aclame:pro 414 ----SIRRNILNYNADQIKQDDLDRAREQI-TL--FAGNPVQ-RPQEDGSR 456 (456) Q Consensus 414 ----~t~~~~~~~~~~~~~~~e~~~~~e~~-~~--~~~~~~~-~~~~~Gs~ 456 (456) ..+++.+|+.+-+..+......++.. .. ....++. ...+..++ T Consensus 276 ~~~~~~~~e~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 326 (355) T protein:vir:78 276 PELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQGAALPSR 326 (355) T ss_pred HHHHHHHHHHhCCCCCCCCCcccCCccccccccccccccCCcccccccccc Confidence 34567788742211111100000000 00 0000000 01111111 No 251 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=96.42 E-value=0.00064 Score=38.10 Aligned_cols=346 Identities=9% Similarity=-0.052 Sum_probs=139.6 Q ss_pred HHHHHHHHHHhhccCcccccCcccchhhhhhhhhh--cCChHHHHHHHHHHhhhcCCcccCC--Cc----cc---cHHHH Q lcl|Aclame:pro 21 MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA--RTNWGLMVRDSVADRIIPNGITVGG--SA----DS---DLALR 89 (456) Q Consensus 21 ~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~--~~n~~~~iVd~~~~~l~g~~~~~~~--~~----d~---~~~~~ 89 (456) ..-+.+...+..+...- -...... .....+ .......+|+..++-+..-|+.+-. .. ++ -.... T Consensus 1 Mg~f~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~ 75 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNN--DTQRVTA---WQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSD 75 (378) T ss_pred CCccccchhcccccccC--Ccceeee---eccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCcccccccccccch Confidence 11111111111111000 0000000 000011 1124566777777777777765311 01 10 01123 Q ss_pred HHHHHHh--cC---hhHHHHHHHHHHhhCCeeEEEE-EeCCCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCc Q lcl|Aclame:pro 90 ARRIWRD--NR---MDSVCKQWVKYGLDFGESYLTC-WRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAE 163 (456) Q Consensus 90 l~~~~~~--n~---~~~~~~~~~~~~~~~G~a~~~v-~~~~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~ 163 (456) +.+++.. |. -..+...++..++.+|.||+++ +.+..|++.... | .. + T Consensus 76 l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~--p---------~~---------------~- 128 (378) T protein:vir:94 76 LDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLL--F---------AD---------------D- 128 (378) T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEE--e---------cC---------------C- Confidence 5555543 32 2355677888899999999864 444444322110 0 00 0 Q ss_pred eeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 164 SDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQ 243 (456) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~ 243 (456) .. -|.++.++|+.. | +.-..+.|-++ .+.++++..++. T Consensus 129 ~~---~~~~~diiH~~~---------------------------------~---~~~~~g~s~l~---~~~~~i~~~~~~ 166 (378) T protein:vir:94 129 KK---EYKPEELVRLTS---------------------------------P---FYINEDTSILD---NALASIQTKLEQ 166 (378) T ss_pred ee---EeeeeeeEEecC---------------------------------c---CCccchhHHHH---HHHHHHHHHHhc Confidence 00 011222222210 0 00001223222 222232222111 Q ss_pred HHHHHHHHhhhHHhhcCCCccccccccc-hhhhhh-hhhh-----hhhccceeecCCCcceeeccccchHHHHHHHHHHH Q lcl|Aclame:pro 244 LLSTMAIQAFRQRALKSTEHGLPNVDEN-GNAIDY-ASIF-----EAAPGALWELPPGVDIWESQANDFTPMLSAIKEHI 316 (456) Q Consensus 244 ~~~~~~~~~~~~~~i~G~~~~~~~~d~~-g~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (456) +.+.-+++- . ....++. ...... ...+ ....+.+..++.+.++.++...+...-.+.++... T Consensus 167 --------~~~~gil~~-~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~~~~~~~ 235 (378) T protein:vir:94 167 --------GKLRGLLKI-N--AFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKDEIDLIK 235 (378) T ss_pred --------ccccceeee-C--CcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEEccCChhhhhHHHHHHHH Confidence 111111110 0 0000111 111100 0111 11234577888888887765433322234557777 Q ss_pred HHHHhhcCCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cceEEecCCCCCC Q lcl|Aclame:pro 317 RQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVED--TVDVSFESPDRVT 394 (456) Q Consensus 317 ~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~--~i~v~f~~~~~~~ 394 (456) .+||.+-++|+..+.+.. .....+.+....|.-.+...+..|...|-.- --+-.|..... .+.+.+....-.| T Consensus 236 ~~Ia~~fgVP~~~l~~~~--se~~~~~f~~~tL~P~~~~ie~~l~~~Ll~~---~er~~g~~~~~~~~~~f~~~~l~~~d 310 (378) T protein:vir:94 236 SELLTGYFMNENILLGTA--SQEQQIYFYNSTIIPLLIQLEKELTYKLIST---NRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) T ss_pred HHHHHHhCCCHHHhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHhhhhhhcccccceeecchhhhhcC Confidence 899999999998885422 1222222222222222222222222111000 00011222222 2344445556788 Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHhCCCCccHHHH-----HHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 395 LGEKYSAASLAKAAGESWASIRRNILNYNADQIKQ-----DDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 395 ~~e~ad~~~kl~~~g~~s~~t~~~~~~~~~~~~~~-----~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) ..+.++++.++.++|+++.-.+++.+|+.|.+--+ ....................++++|.- T Consensus 311 ~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n 377 (378) T protein:vir:94 311 LKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNLSDLQGSRKDVTSTDETNN 377 (378) T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecccccccccchhhcCCcCCCCCCCCCCC Confidence 88999999999999999999999999987642111 000000000000011111122233322 No 252 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=96.36 E-value=0.0007 Score=37.88 Aligned_cols=401 Identities=11% Similarity=0.020 Sum_probs=167.5 Q ss_pred CC---CC--------------------------CHHHH--HHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhh Q lcl|Aclame:pro 1 MT---AS--------------------------TPAEW--LPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWR 49 (456) Q Consensus 1 ~~---~~--------------------------t~~~~--~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~ 49 (456) -| |. ++.++ .+.| ..+|+.+..+++-+..+ T Consensus 27 ~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eL-------I~~YR~ma~~pEvd~Av------------ 87 (516) T protein:vir:10 27 ESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDL-------INTYRQLINNPEVERAV------------ 87 (516) T ss_pred CcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHH-------HHHHHHHhhccchhhHH------------ Confidence 00 00 00000 1111 22233333322222211 Q ss_pred hhhhhhcCChHHHHHHHH-HHhhhcCCcccCC-------CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEE Q lcl|Aclame:pro 50 SFQREARTNWGLMVRDSV-ADRIIPNGITVGG-------SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCW 121 (456) Q Consensus 50 ~~~~k~~~n~~~~iVd~~-~~~l~g~~~~~~~-------~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~ 121 (456) ..||+.. +.--..+||.+.- +-.+....++..++.--+|+....+..+...+.|+-|.|.. T Consensus 88 -----------~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKi 156 (516) T protein:vir:10 88 -----------ANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHKI 156 (516) T ss_pred -----------HHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEE Confidence 1111111 1111123343321 11122445566666667889999999999999999999966 Q ss_pred eC--CCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCc Q lcl|Aclame:pro 122 RR--DDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDS 199 (456) Q Consensus 122 ~~--~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (456) .| .+|-..++.++|+.+..+.--.... ..... .........+|.++.... ...+..........++... T Consensus 157 id~~k~GI~Elr~lDPr~i~~vR~i~~~~--~~~~~----v~~~~~e~~~Y~~~~~~~-~~~g~~~~~~~~ikI~~dA-- 227 (516) T protein:vir:10 157 MPNPKKGIAELRRLDPRFMEYYREIVTSD--IGGTT----IVKGYREFFIYTTGNEGY-SYNGRIFEPNTRIKIPRSA-- 227 (516) T ss_pred ecCccccceeeeeeCCcceeeEeeecccc--cccch----hhhhhhheeeeccCcccc-ccccceeCCCcceeechhh-- Confidence 65 3566678889999887664211000 00000 001112233444322211 1111000000000000000 Q ss_pred ccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhh Q lcl|Aclame:pro 200 WVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYA 278 (456) Q Consensus 200 ~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~ 278 (456) +...|.++ +..++..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... =+ . T Consensus 228 ---I~y~hSGL-----~d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeq-Yl--~ 295 (516) T protein:vir:10 228 ---VVYASSGL-----MDCSDRGIIGYLHNAVKPANQL-KLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATE-YV--N 295 (516) T ss_pred ---eeeecccc-----eeCCCCceeeeehhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--H Confidence 00000000 0001111123333322211111 12222222222222222211100000 00000000 00 0 Q ss_pred hhhhhhccce----------------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcc Q lcl|Aclame:pro 279 SIFEAAPGAL----------------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMP 332 (456) Q Consensus 279 ~~~~~~~~~~----------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~ 332 (456) .......+++ |. ...+..+..++...--+-++-++-+.+.++...++|..-+.. T Consensus 296 ~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~ 375 (516) T protein:vir:10 296 GIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMDDVRWFNKKLYEALRIPLSRIPR 375 (516) T ss_pred HHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccC Confidence 0001111111 11 011222233333221122334555566788888999888764 Q ss_pred ccc-cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHH--- Q lcl|Aclame:pro 333 DSA-NQ---SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEK--- 398 (456) Q Consensus 333 ~~~-n~---Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~--- 398 (456) ..+ |. -+..|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+... T Consensus 376 e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Ei 455 (516) T protein:vir:10 376 DDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIET 455 (516) T ss_pred CCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHH Confidence 332 22 233444445556677788899999999999877666666421 1357788865544433333 Q ss_pred ----HHHHHHHH--hcCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 399 ----YSAASLAK--AAGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 399 ----ad~~~kl~--~~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ++++..+. -+..+|.+++++ .|.++++++++++.+.++|.-......+.+. ++= T Consensus 456 l~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~e~k~I~~E~~~~~~~~p~~~--~~f 516 (516) T protein:vir:10 456 LRLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIAQEEKQIEQEAGIKRFQNPENE--DDF 516 (516) T ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHHHHHHHHHHhhhCCCCCCCCcc--ccC Confidence 33333332 235789998865 7899999888877666555443333322221 222 No 253 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=96.36 E-value=0.0007 Score=37.88 Aligned_cols=401 Identities=11% Similarity=0.020 Sum_probs=167.5 Q ss_pred CC---CC--------------------------CHHHH--HHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhh Q lcl|Aclame:pro 1 MT---AS--------------------------TPAEW--LPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWR 49 (456) Q Consensus 1 ~~---~~--------------------------t~~~~--~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~ 49 (456) -| |. ++.++ .+.| ..+|+.+..+++-+..+ T Consensus 27 ~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eL-------I~~YR~ma~~pEvd~Av------------ 87 (516) T protein:vir:10 27 ESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDL-------INTYRQLINNPEVERAV------------ 87 (516) T ss_pred CcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHH-------HHHHHHHhhccchhhHH------------ Confidence 00 00 00000 1111 22233333322222211 Q ss_pred hhhhhhcCChHHHHHHHH-HHhhhcCCcccCC-------CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEE Q lcl|Aclame:pro 50 SFQREARTNWGLMVRDSV-ADRIIPNGITVGG-------SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCW 121 (456) Q Consensus 50 ~~~~k~~~n~~~~iVd~~-~~~l~g~~~~~~~-------~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~ 121 (456) ..||+.. +.--..+||.+.- +-.+....++..++.--+|+....+..+...+.|+-|.|.. T Consensus 88 -----------~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKi 156 (516) T protein:vir:10 88 -----------ANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHKI 156 (516) T ss_pred -----------HHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEE Confidence 1111111 1111123343321 11122445566666667889999999999999999999966 Q ss_pred eC--CCCceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCc Q lcl|Aclame:pro 122 RR--DDGTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDS 199 (456) Q Consensus 122 ~~--~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (456) .| .+|-..++.++|+.+..+.--.... ..... .........+|.++.... ...+..........++... T Consensus 157 id~~k~GI~Elr~lDPr~i~~vR~i~~~~--~~~~~----v~~~~~e~~~Y~~~~~~~-~~~g~~~~~~~~ikI~~dA-- 227 (516) T protein:vir:10 157 MPNPKKGIAELRRLDPRFMEYYREIVTSD--IGGTT----IVKGYREFFIYTTGNEGY-SYNGRIFEPNTRIKIPRSA-- 227 (516) T ss_pred ecCccccceeeeeeCCcceeeEeeecccc--cccch----hhhhhhheeeeccCcccc-ccccceeCCCcceeechhh-- Confidence 65 3566678889999887664211000 00000 001112233444322211 1111000000000000000 Q ss_pred ccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhh Q lcl|Aclame:pro 200 WVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYA 278 (456) Q Consensus 200 ~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~ 278 (456) +...|.++ +..++..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... =+ . T Consensus 228 ---I~y~hSGL-----~d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeq-Yl--~ 295 (516) T protein:vir:10 228 ---VVYASSGL-----MDCSDRGIIGYLHNAVKPANQL-KLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATE-YV--N 295 (516) T ss_pred ---eeeecccc-----eeCCCCceeeeehhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--H Confidence 00000000 0001111123333322211111 12222222222222222211100000 00000000 00 0 Q ss_pred hhhhhhccce----------------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcc Q lcl|Aclame:pro 279 SIFEAAPGAL----------------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMP 332 (456) Q Consensus 279 ~~~~~~~~~~----------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~ 332 (456) .......+++ |. ...+..+..++...--+-++-++-+.+.++...++|..-+.. T Consensus 296 ~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~ 375 (516) T protein:vir:10 296 GIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMDDVRWFNKKLYEALRIPLSRIPR 375 (516) T ss_pred HHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccC Confidence 0001111111 11 011222233333221122334555566788888999888764 Q ss_pred ccc-cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHH--- Q lcl|Aclame:pro 333 DSA-NQ---SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEK--- 398 (456) Q Consensus 333 ~~~-n~---Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~--- 398 (456) ..+ |. -+..|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+... T Consensus 376 e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Ei 455 (516) T protein:vir:10 376 DDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIET 455 (516) T ss_pred CCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHH Confidence 332 22 233444445556677788899999999999877666666421 1357788865544433333 Q ss_pred ----HHHHHHHH--hcCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 399 ----YSAASLAK--AAGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 399 ----ad~~~kl~--~~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ++++..+. -+..+|.+++++ .|.++++++++++.+.++|.-......+.+. ++= T Consensus 456 l~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~e~k~I~~E~~~~~~~~p~~~--~~f 516 (516) T protein:vir:10 456 LRLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIAQEEKQIEQEAGIKRFQNPENE--DDF 516 (516) T ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHHHHHHHHHHhhhCCCCCCCCcc--ccC Confidence 33333332 235789998865 7899999888877666555443333322221 222 No 254 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=96.33 E-value=0.00073 Score=37.77 Aligned_cols=406 Identities=10% Similarity=0.004 Sum_probs=170.1 Q ss_pred CC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC-cccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MT----ASTPAEWLPVLTKRIDDGMSRVRLLARYSNG-DA-PLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~----~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g-~~-~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) || +-||.--+.++...=. ... .+.|+- ++ +.+..+... .-+... .-......-+++.....+.+. T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~--~~~----~~~~~~~e~~~~lr~~~~~-~ly~~m--~e~D~~i~s~l~~rk~av~~~ 71 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGV--VDG----WTVWDPFEQTPELQWPQSV-AVYSRM--DNEDSRVTSLLEAISLPIRST 71 (469) T ss_pred CCCcccCCCCccchhhhhhccc--ccc----hhhccccccccccccccch-HHHHHH--HhhChHHHHHHHHHHHHHhcC Confidence 55 4445422333322100 001 122221 11 111111110 001111 012456677788888888888 Q ss_pred CcccCCCcc-ccHHHHHHHHHH-----------------hcChhHHHHHHHHHHhhCCeeE-EEEEeCC----CCceEEE Q lcl|Aclame:pro 75 GITVGGSAD-SDLALRARRIWR-----------------DNRMDSVCKQWVKYGLDFGESY-LTCWRRD----DGTATIT 131 (456) Q Consensus 75 ~~~~~~~~d-~~~~~~l~~~~~-----------------~n~~~~~~~~~~~~~~~~G~a~-~~v~~~~----~g~~~i~ 131 (456) ++++....+ .+..+.+.+.+. +..+..++.++...++-||.+. +++|... +|...+. T Consensus 72 ~w~v~p~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~ 151 (469) T protein:vir:10 72 PWRIRANGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLR 151 (469) T ss_pred CceEecCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeee Confidence 888753332 222222222211 1135566677777788899875 5777532 4555444 Q ss_pred EEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCc Q lcl|Aclame:pro 132 ADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGS 211 (456) Q Consensus 132 ~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (456) .+.++. +. .+.++..+.++.....+...+..-... ......... ....... T Consensus 152 ~l~~rp------~~------~i~~~~~~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~----~~lp~~k 202 (469) T protein:vir:10 152 KLAPRP------QW------TISKFNVAPDGGLESIEQIAPPARTRG-------------SLYVANIAP----PEIPVNR 202 (469) T ss_pred eeeecC------cc------cceeeeeccCCceeeeeecCccccccc-------------ccccCCCCc----cccccCc Confidence 332221 00 000111111111111110000000000 000000000 0001111 Q ss_pred eeEEEEe---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhh-hhhhhhhhhccc Q lcl|Aclame:pro 212 PPPVVVY---QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI-DYASIFEAAPGA 287 (456) Q Consensus 212 ~~pv~~~---~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~-~~~~~~~~~~~~ 287 (456) .+...+- .|+.|.|.+..+....--=+..+.+.+...+-|+.|.++.+-..... +++...+ .....+..+... T Consensus 203 ~i~~~~~~~~g~p~g~gLlr~~~~~~~fK~~~~~~w~~f~EryG~P~~vgky~~~a~---~~ek~~l~~a~~~~~~g~~a 279 (469) T protein:vir:10 203 LVVYTRNKRPGQWQGKSILRSAYKHWLLKDKLLRIEAATAERNGMGIPVGTASSATD---EDEVRKMAALARSVRGGINA 279 (469) T ss_pred EEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcceEEecCCCCC---HHHHHHHHHHHHHHhcCCce Confidence 1222221 36778888877543322223356777888899999987765322111 1111111 111112223334 Q ss_pred eeecCCCcceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 288 LWELPPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPD-SANQSAEGAHNIEKGFLFKCEDRLSIAKIGLE 365 (456) Q Consensus 288 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~ 365 (456) ...++.+.++..+. ..+...|...++.+-++|++..--......+. ++...|+ ....-....++.-.+.+...+. T Consensus 280 ~~iip~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG~tlTs~~~gGS~a~~~---vh~ev~~d~~~sDa~~i~~tln 356 (469) T protein:vir:10 280 GVGLAQGQILELLGVSGNLPDIRRAIEGHDRSIALSGLAHFLNLDGKGGSYALAS---VLEDPFTQAVHAYATSICRIAN 356 (469) T ss_pred EEEccCCceEEEeecCCCchHHHHHHHHHHHHHHHHHhcccccccCccchhhHHH---HHHHHHHHHHHHHHHHHHHHHH Confidence 45566666643322 23345677777777778876442111111111 1111122 1222222233333455556664 Q ss_pred -HHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHHHhcCC-----CcHHHHHHhCCCCccHHHHHHHHHHHHHH Q lcl|Aclame:pro 366 -AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGE-----SWASIRRNILNYNADQIKQDDLDRAREQI 439 (456) Q Consensus 366 -~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl~~~g~-----~s~~t~~~~~~~~~~~~~~~e~~~~~e~~ 439 (456) ++++-++.+.........++.|.... ......++.+.+|+++|+ ++.+-+++.+|+.+....+......+.. T Consensus 357 ~~li~~l~~lN~g~~~~~P~~~~~~~e-~~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~- 434 (469) T protein:vir:10 357 QHIIEDLVDINFGVDTPAPVLTFDPIG-SRQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPA- 434 (469) T ss_pred HHHHHHHHHhcCCCCCCccEEEecCCC-CcHHHHHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCCCcccccchhcc- Confidence 46665555553333333466776554 345567899999999998 3556677888886432222111111110 Q ss_pred HHHhhcccccccCCCCC Q lcl|Aclame:pro 440 TLFAGNPVQRPQEDGSR 456 (456) Q Consensus 440 ~~~~~~~~~~~~~~Gs~ 456 (456) ..+.+.+..+++. T Consensus 435 ----~~~~~~~~~~~~~ 447 (469) T protein:vir:10 435 ----AVPNQSAAPARTR 447 (469) T ss_pred ----cCCCCCccccccC Confidence 0111111111111 No 255 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=96.29 E-value=0.00078 Score=37.62 Aligned_cols=409 Identities=11% Similarity=0.023 Sum_probs=172.7 Q ss_pred CCCCCHH--HHHHHHH------HHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHH-HHhh Q lcl|Aclame:pro 1 MTASTPA--EWLPVLT------KRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSV-ADRI 71 (456) Q Consensus 1 ~~~~t~~--~~~~~l~------~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~-~~~l 71 (456) |.+.+-. -+-+... +.-.+...+|+.+..+++-+..+- .||+.. +.-- T Consensus 46 ~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~-----------------------eIVneaiv~d~ 102 (521) T protein:vir:81 46 DNLPASAWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNHEVENAVQ-----------------------NIVNDAIVFEE 102 (521) T ss_pred CCCcceeecceeeeecccccchhhHHHHHHHHHHHhhccchhhHHH-----------------------HhhcceeEecC Confidence 1110000 0000000 000111223333333333222221 111111 1111 Q ss_pred hcCCcccCC-------CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC---CCceEEEEEccceEEEE Q lcl|Aclame:pro 72 IPNGITVGG-------SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD---DGTATITADSPETMVVS 141 (456) Q Consensus 72 ~g~~~~~~~-------~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~---~g~~~i~~~~p~~~~~i 141 (456) ..+||.+.- +-.+....++..++.--+|+....+..+...+.|+-|.|.-.|+ +|-..++.++|+.+..+ T Consensus 103 ~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~pk~GI~Elr~lDPr~i~~v 182 (521) T protein:vir:81 103 GHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPRNLEYV 182 (521) T ss_pred CCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEEcCCccccceeeeeeCCcceeee Confidence 122333321 11223445566677667889999999999999999999987554 45567899999988777 Q ss_pred eeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC Q lcl|Aclame:pro 142 VDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP 221 (456) Q Consensus 142 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~ 221 (456) .-........ +.. ........+|.++........ ..........++... +...|.++ +..++. T Consensus 183 r~i~k~~~~~--~~v----~~~~~e~f~Y~~~~~~~~~~g-~~~~~~~~vkI~~dA-----I~y~hSGl-----~d~~~~ 245 (521) T protein:vir:81 183 REIITEDTPE--GKI----YKATKEYFIYTVGNSSYCAGG-QVFSPNSRVKIPRSA-----ITYAHSGL-----MDCDDK 245 (521) T ss_pred eeecccccCc--cce----ecceeeeeeeecCCccccccc-eeecCCcceeechhh-----eeeeeccc-----eeCCCC Confidence 5322111000 000 112333445555433221111 111111111110000 00011111 111111 Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhhhhhhhhccce------------ Q lcl|Aclame:pro 222 DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYASIFEAAPGAL------------ 288 (456) Q Consensus 222 ~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~~~~~~~~~~~------------ 288 (456) .=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... =+ ........+++ T Consensus 246 ~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeq-Yl--~~im~k~kNklvYDa~TGev~dd 321 (521) T protein:vir:81 246 YIIGYLHRAVKPANQL-KLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQ-HM--NSVAQSFKNRVVYDASTGKLKNQ 321 (521) T ss_pred eeeecchhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--HHHHHhcCceeEeeccccccccc Confidence 1123333322222211 12222222222222222222100000 00000000 00 00000001100 Q ss_pred ----------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc---cc-hHHHHHHHHHHHH Q lcl|Aclame:pro 289 ----------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA---NQ-SAEGAHNIEKGFL 350 (456) Q Consensus 289 ----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~---n~-Sg~Al~~~~~~l~ 350 (456) |. ...+..+..++...--+-++-++-+.+.++...++|..-+....+ |. -+..|---+..+. T Consensus 322 rk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~ 401 (521) T protein:vir:81 322 QANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFS 401 (521) T ss_pred ccccchhhhhcccccCCCcccceeecccCCCCChHHHHHHHHHHHHHHhCCccccccCCCCcceeccccchhhHHHHHHH Confidence 11 011222333333221122334555666788888999888832211 11 3345555566667 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHH-------HHHHHHh--cCCCcHH Q lcl|Aclame:pro 351 FKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYS-------AASLAKA--AGESWAS 414 (456) Q Consensus 351 ~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad-------~~~kl~~--~g~~s~~ 414 (456) .-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++ ++..+.. +..+|.+ T Consensus 402 KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~d 481 (521) T protein:vir:81 402 KFIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQ 481 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchH Confidence 77888999999999999877666666422 134778886654444333333 3332221 1246998 Q ss_pred HHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 415 IRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 415 t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs 455 (456) ++++ .|.+++++++++..+.++|.-.....++ ....+|= T Consensus 482 yi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p--~~~~~~f 521 (521) T protein:vir:81 482 TVMRDILKYTDDQMDTEKKQIEEEANDPRFKQT--PDEIEDF 521 (521) T ss_pred HHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCC--cccccCC Confidence 8865 7899999888877665555433332211 1223333 No 256 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=96.10 E-value=0.001 Score=37.00 Aligned_cols=405 Identities=11% Similarity=0.050 Sum_probs=169.0 Q ss_pred CC-CCCHHHH--H--------------HHHHH-----HHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCC Q lcl|Aclame:pro 1 MT-ASTPAEW--L--------------PVLTK-----RIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTN 58 (456) Q Consensus 1 ~~-~~t~~~~--~--------------~~l~~-----~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n 58 (456) .+ |.+.+-- + ..-.. +-++-..+|..+..+++- T Consensus 23 ~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEv------------------------- 77 (511) T protein:vir:56 23 FSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIPVKELIKSYRALAEYHEV------------------------- 77 (511) T ss_pred ccCCCCCCCceEEecccccceecceeccccccccCccchHHHHHHHHHHhhccch------------------------- Confidence 00 1100000 0 00000 000111122222222222 Q ss_pred hHHHHHHHHHHhh-----hcCCcccCCC-------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC-CC Q lcl|Aclame:pro 59 WGLMVRDSVADRI-----IPNGITVGGS-------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR-DD 125 (456) Q Consensus 59 ~~~~iVd~~~~~l-----~g~~~~~~~~-------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~-~~ 125 (456) -.+|+..+.=. ..+||.+.-+ -.+....++..++.--+|+....+..+...+.|+-|.|.-.| ++ T Consensus 78 --d~Av~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~k~ 155 (511) T protein:vir:56 78 --DDAIQEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVSLLQMRKHGYKWFRKWYVDSRIYFHKILDKDN 155 (511) T ss_pred --hhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecccc Confidence 22222222111 1234433221 112244556667766788999999999999999999987554 35 Q ss_pred CceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccccccc Q lcl|Aclame:pro 126 GTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGD 205 (456) Q Consensus 126 g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (456) |-..++.++|+.+-.+..-... ....+.. ..+.....+|.+....................++.. .+.. T Consensus 156 GI~eLr~lDPr~i~~vr~i~~~--~~~~~~v----~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~~d-----aI~y 224 (511) T protein:vir:56 156 NIIELRPLNPMKMELVREIQKE--TIDGVEV----VKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIPKD-----AIVF 224 (511) T ss_pred ceeehhhcCcccchhhhhhhcc--ccccccc----ccceeeeeEecCCCcccCcccccccccccceeechh-----heee Confidence 6667888899988766532110 0000000 112233445544321111000000000000000000 0000 Q ss_pred ccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhhhhhhhh Q lcl|Aclame:pro 206 AVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYASIFEAA 284 (456) Q Consensus 206 ~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~~~~~~~ 284 (456) .|.++-.++ .+|..-.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... -+ ....... T Consensus 225 ~hSGL~d~~---~~~g~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeq-Yl--~~iM~k~ 297 (511) T protein:vir:56 225 AHSGLMRGC---ADDPYIIGYLDRAIKPANQL-KMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQ-YV--NGIMQNV 297 (511) T ss_pred ecccceecc---CCCCeeeccchhhhHHHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--HHHHHhc Confidence 111110000 11222344444433222222 12222222222222222221100000 00000000 00 0000001 Q ss_pred ccce----------------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccc--c Q lcl|Aclame:pro 285 PGAL----------------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA--N 336 (456) Q Consensus 285 ~~~~----------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~--n 336 (456) .+++ |. ...+..+..++...--+-++-++-+.+.++...++|..-+..... . T Consensus 298 kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kKLy~aLnVP~SRl~~e~q~~~ 377 (511) T protein:vir:56 298 KNRVVYDTQTGQVKNTTNAMSMLEDYYLPRREGSKGTEVSTLPGGQSLGDIEDVLYFNRKLYKAMRIPTSRAASEDQTGG 377 (511) T ss_pred CceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCccc Confidence 1111 11 011222233333221122334555566788888999988863321 1 Q ss_pred c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHHHH---- Q lcl|Aclame:pro 337 Q---SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYSAA---- 402 (456) Q Consensus 337 ~---Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad~~---- 402 (456) . -|..|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++.+ T Consensus 378 f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl 457 (511) T protein:vir:56 378 INFGQGAEITRDELKFTKFVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRM 457 (511) T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHH Confidence 1 244555566667777888999999999999887666666421 13577888665444443333332 Q ss_pred ---HHHHh--cCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 403 ---SLAKA--AGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 403 ---~kl~~--~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ..+.. +..+|.+++++ .|.+++++++++..+.++|.-+. --+.|.+|= T Consensus 458 ~~l~~~dpyvGky~S~~yi~k~ILr~tDeei~~~~k~I~~E~k~~----~~~~~e~~f 511 (511) T protein:vir:56 458 NAMRDIQDYAGKYYSHKYIQKNILRLSDDQITAMQSEIDEEETNP----RFQQDDQGF 511 (511) T ss_pred HHHHHhcchhccccchHHHHHHHhccCHHHHHHHHHHHHHhhcCC----CCCCcccCC Confidence 22211 12459998865 78999998888776655553322 222233333 No 257 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=96.05 E-value=0.0011 Score=36.85 Aligned_cols=409 Identities=11% Similarity=0.032 Sum_probs=172.1 Q ss_pred CCC---CCHH----HHHHHHHH---HH---HHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHH Q lcl|Aclame:pro 1 MTA---STPA----EWLPVLTK---RI---DDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSV 67 (456) Q Consensus 1 ~~~---~t~~----~~~~~l~~---~~---~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~ 67 (456) +.+ .+|. -+.+.... .. .+...+|+.+..+++-+..+ ..||+.. T Consensus 41 ~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av-----------------------~eIVnea 97 (521) T protein:vir:65 41 EVEINDNSPASSWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNHEVENAV-----------------------QNIVNDA 97 (521) T ss_pred eecccCCccccccccceeeeccccchhhhHHHHHHHHHHHhhccchhhHH-----------------------HHhhcce Confidence 110 1110 01111110 01 11122233333322222211 1111111 Q ss_pred -HHhhhcCCcccCC-------CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC---CCceEEEEEccc Q lcl|Aclame:pro 68 -ADRIIPNGITVGG-------SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD---DGTATITADSPE 136 (456) Q Consensus 68 -~~~l~g~~~~~~~-------~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~---~g~~~i~~~~p~ 136 (456) +.--..+||.+.- +-.+....++..++.--+|+....+..+...+.|+-|.|.-.|+ +|-..++.++|+ T Consensus 98 iv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~pk~GI~ELr~lDPr 177 (521) T protein:vir:65 98 IVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNTIQFDRRGQDMFRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPR 177 (521) T ss_pred eEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCccccceeeeeeCCc Confidence 1111123343322 11223445566677667889999999999999999999987554 455678999999 Q ss_pred eEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEE Q lcl|Aclame:pro 137 TMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVV 216 (456) Q Consensus 137 ~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 216 (456) .+..+.-........ +. .........+|.++........ ..........++... +...|.++ + T Consensus 178 ~i~~vr~i~k~~~~~--~~----v~~~~~e~f~Y~~~~~~~~~~g-~~~~~~~~vkI~~dA-----I~y~hSGl-----~ 240 (521) T protein:vir:65 178 NLEYVREIITEDTPE--GK----IYKATKEYFIYTVGNSSYCAGG-QVFSPNSRVKIPRSA-----ITYAHSGL-----M 240 (521) T ss_pred ceeeeeeecccccCC--cc----eecceeeeeeeecCCcceeccc-eeecCCcceeechhh-----eeeeeccc-----e Confidence 887775322111000 00 0112333445554333222111 011111111111000 00111111 1 Q ss_pred EecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhhhhhhhhccce------- Q lcl|Aclame:pro 217 VYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYASIFEAAPGAL------- 288 (456) Q Consensus 217 ~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~~~~~~~~~~~------- 288 (456) ..++..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... =+ ........+++ T Consensus 241 d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeq-Yl--~~im~k~kNklvYDa~TG 316 (521) T protein:vir:65 241 DCDDKYIIGYLHRAVKPANQL-KLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQ-HM--NSVAQSFKNRVVYDASTG 316 (521) T ss_pred eCCCCeeeecchhhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--HHHHHhcCceeEeecccc Confidence 111111223343332222221 12222222222222222222100100 00000000 00 00000001100 Q ss_pred ---------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccc-c--cc-hHHHHHHH Q lcl|Aclame:pro 289 ---------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS-A--NQ-SAEGAHNI 345 (456) Q Consensus 289 ---------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~-~--n~-Sg~Al~~~ 345 (456) |. ...+..+..++...--+-++-++-+.+.++...++|..-+.... + |. -+..|--- T Consensus 317 ev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRD 396 (521) T protein:vir:65 317 KLKNQQANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRD 396 (521) T ss_pred cccccccccchhhhhcccccCCCCccceeecccCCCcChHHHHHHHHHHHHHHhCCCceeccCCCCcceeccccchhhHH Confidence 11 01122223333322112233455556677888899987753221 1 11 24455556 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHH-------HHHHHHh--cC Q lcl|Aclame:pro 346 EKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYS-------AASLAKA--AG 409 (456) Q Consensus 346 ~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad-------~~~kl~~--~g 409 (456) +..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++ ++..+.. +. T Consensus 397 EiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGk 476 (521) T protein:vir:65 397 ELEFSKFIRTLQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGK 476 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcc Confidence 6666777888999999999999877666666422 134778886654444333333 3332221 12 Q ss_pred CCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCCC Q lcl|Aclame:pro 410 ESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDGS 455 (456) Q Consensus 410 ~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs 455 (456) .+|.+++++ .|.+++++++++..+.++|.-.....++ ....+|= T Consensus 477 y~S~dyi~k~ILr~tDeei~~~~k~I~~E~~~~~~~~p--~~~~~~f 521 (521) T protein:vir:65 477 YFSNQTVMRDILKYTDDQMDTEKKQIEEEANDPRFKQT--PDEIEDF 521 (521) T ss_pred ccchHHHHHHHhccCHHHHHHHHHHHHHhhhCCCCCCC--cccccCC Confidence 469998865 7899999888877665555433322211 1123333 No 258 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=95.79 E-value=0.0014 Score=36.15 Aligned_cols=282 Identities=11% Similarity=0.072 Sum_probs=98.0 Q ss_pred cCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcc---------cc-------HHHHHHH----------- Q lcl|Aclame:pro 40 LTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSAD---------SD-------LALRARR----------- 92 (456) Q Consensus 40 ~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d---------~~-------~~~~l~~----------- 92 (456) ..++.+..-.....+ --.....|.||+|..+....+ +. ....|.+ T Consensus 1 m~~~~~~~~~~~~~~--------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~ 72 (340) T protein:vir:98 1 MSKRKPRKAVAMTAS--------APQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) T ss_pred CCCCCCCcccccccc--------CccceeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchh Confidence 111000000000000 000001122222221110000 00 0000111 Q ss_pred ----------HHHhcCh--hHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEe Q lcl|Aclame:pro 93 ----------IWRDNRM--DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRD 159 (456) Q Consensus 93 ----------~~~~n~~--~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 159 (456) .+.-|.. ...+..++.+.+.+|.||+.+-.+..|++ .+..++|..+....+.. ++|.. T Consensus 73 i~~k~n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~~---------~~~~~ 143 (340) T protein:vir:98 73 IYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---------VFWFV 143 (340) T ss_pred hhhhhhHHhhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccCc---------EEEEE Confidence 1111211 13345677888899999999988888876 46666666655433221 11111 Q ss_pred cCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 160 LDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINR 239 (456) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~ 239 (456) ..+.. ...|.++.+.++... + |. ..-.|.|.+...+ .++.. T Consensus 144 ~~~~~--~~~~~~~eViHir~~--------------------------~-----~~---~~~~Gls~~~~a~---~si~l 184 (340) T protein:vir:98 144 ENFTQ--PHEFAPDTVFHLLEP--------------------------D-----IN---QEIYGLPEYLSAL---NSAWL 184 (340) T ss_pred ecCCe--EEEEccccEEEEcCC--------------------------C-----CC---CCcccccHHHHHH---HHHHH Confidence 11111 112333333333100 0 00 0012555544332 22222 Q ss_pred HHHHHHHHHHHHhh---hHHh--hcCCCccccccccchhhhhhhhhhhhhccceeecCC-----Ccceeeccccc-hHHH Q lcl|Aclame:pro 240 AELQLLSTMAIQAF---RQRA--LKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPP-----GVDIWESQAND-FTPM 308 (456) Q Consensus 240 ~~s~~~~~~~~~~~---~~~~--i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~ 308 (456) ..+-..-...+|.+ |-.+ ++|....+...+.-.+.+..... ....+.++...+ +.++..+.... -..| T Consensus 185 ~~aa~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G-~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf 263 (340) T protein:vir:98 185 NESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKG-LGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDF 263 (340) T ss_pred HHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcC-ccccCceeEecCCCCccceEEEEcCCChhHHHH Confidence 11111111233333 2222 23322222111111111111100 011123444432 33444433222 1248 Q ss_pred HHHHHHHHHHHHhhcCCChhhhcccccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 309 LSAIKEHIRQLSSATKTPLPMLMPDSAN------QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDT 382 (456) Q Consensus 309 ~~~~~~~~~~i~~~t~~p~~~~~~~~~n------~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~ 382 (456) ++..+....+|++.-++|+..+|....| +...+..+....|.=.+ +.|. ++. ...|... T Consensus 264 ~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~----~~ie----e~n----~~L~~e~--- 328 (340) T protein:vir:98 264 FNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQ----DRFR----EVN----DWLGMEV--- 328 (340) T ss_pred HHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHH----HHHH----HHH----hcccccc--- Confidence 8888888899999999999988743222 22222222222222222 2221 111 1112110 Q ss_pred ceEEecCCCC-CCH Q lcl|Aclame:pro 383 VDVSFESPDR-VTL 395 (456) Q Consensus 383 i~v~f~~~~~-~~~ 395 (456) ++|++... ..+ T Consensus 329 --~rF~~~~l~~~d 340 (340) T protein:vir:98 329 --IRFKEYTLDNPE 340 (340) T ss_pred --cccCccccccCC Confidence 33443321 111 No 259 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=95.78 E-value=0.0015 Score=36.13 Aligned_cols=402 Identities=11% Similarity=0.047 Sum_probs=169.9 Q ss_pred CC-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHH Q lcl|Aclame:pro 1 MT-------------------ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGL 61 (456) Q Consensus 1 ~~-------------------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~ 61 (456) +. .+....-..+|+ .+|+.+..+++-+..+ . T Consensus 46 ~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~eLI-------~~YR~ma~~pEvd~Av-----------------------~ 95 (524) T protein:vir:98 46 EIETDLNNQKYAGVFQQFYSGQDPAIQNKEQLI-------NTYRGIMSYPEVENAV-----------------------S 95 (524) T ss_pred eecCCCCcceecceeeeeccccccccchHHHHH-------HHHHHHhhccchhhHH-----------------------H Confidence 00 000000011111 2233333322222211 1 Q ss_pred HHHHHH-HHhhhcCCcccCCCc-------cccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC---CCceEE Q lcl|Aclame:pro 62 MVRDSV-ADRIIPNGITVGGSA-------DSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD---DGTATI 130 (456) Q Consensus 62 ~iVd~~-~~~l~g~~~~~~~~~-------d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~---~g~~~i 130 (456) .||+.. +.--..+||.+.-+. .+....++..++.--+|+....+..+...+.|+-|.|.-.|+ +|-..+ T Consensus 96 eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~~~kGI~EL 175 (524) T protein:vir:98 96 EIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDNVLNIYDFDNMGARLFRDWYVDSRIYFHKIMHKDESKGIREL 175 (524) T ss_pred hhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCCCcceeee Confidence 122111 111112344432211 122445566677667889999999999999999999987654 344568 Q ss_pred EEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccC Q lcl|Aclame:pro 131 TADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTG 210 (456) Q Consensus 131 ~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (456) +.++|+.+-.+..-..+ ....+...+ .......+|.+.... +..............++... +...|.++ T Consensus 176 r~lDPr~i~~vr~~~~~-~~~~~~~v~----~~~~e~f~Y~~~~~~-~~~~g~~~~~~~~ikI~~dA-----Ivy~hSGL 244 (524) T protein:vir:98 176 RQLDPRCMELIRESITE-TLDGGVKVF----RGYREFFVYSAPKAG-YTYNGQIYQANQKIKIPRSA-----IVYAHSGL 244 (524) T ss_pred eeeCCccceeeeecccc-ccccchhhc----cceeeeeeeccCCCc-cccccceecCCCceeechhh-----eeeeccCc Confidence 88899988666532211 111111111 122334455443322 11111111111111110000 00001110 Q ss_pred ceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchhhhhhhhhhhhhccce- Q lcl|Aclame:pro 211 SPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGNAIDYASIFEAAPGAL- 288 (456) Q Consensus 211 ~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~~~~~~~~~~~~~~~~- 288 (456) - .. |..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+...... -+ ........+++ T Consensus 245 ~-----d~-~~~iisyLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeq-Yl--~~im~k~kNklv 314 (524) T protein:vir:98 245 E-----DC-SNNIIGYLHRAVKPANQL-RLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQ-YV--NNIAQGLKNRVV 314 (524) T ss_pred c-----cC-CCCeeeehhHhhHhHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHH-HH--HHHHHhcCceeE Confidence 0 00 110123333322211111 12222222222222222222100100 11000000 00 00000011111 Q ss_pred ---------------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcc-c-cccc-hHH Q lcl|Aclame:pro 289 ---------------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMP-D-SANQ-SAE 340 (456) Q Consensus 289 ---------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~-~-~~n~-Sg~ 340 (456) |. ...+..+..++...--+-++-++-+.+.++...++|..-+.. . +-|. -+. T Consensus 315 YDa~TGevrddrk~msMlEDyWLpRReGgrgTEItTLpggqnlgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~ 394 (524) T protein:vir:98 315 YDARTGTVKNQQNNLSMTEDYWLMRRDGKAITEVSTLPGGQNFSDMDDIKWFNRKLYEALRVPLSRMPRDDGGMQIGGGG 394 (524) T ss_pred eeccCceeeccccccchhhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCceeccCCCCcccccccc Confidence 11 011222333333221122334555566778888999877742 1 1122 234 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHH-------HHHHHH Q lcl|Aclame:pro 341 GAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYS-------AASLAK 406 (456) Q Consensus 341 Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad-------~~~kl~ 406 (456) .|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++ ++..+. T Consensus 395 EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~d 474 (524) T protein:vir:98 395 EITRDELKFSKFIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVE 474 (524) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhc Confidence 555566666777888999999999999877666666422 134778886654444333333 333222 Q ss_pred h--cCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 407 A--AGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 407 ~--~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) . +..+|.+++++ .|.++++++++++.+.++|.-.....++.. +.+|= T Consensus 475 pyvGky~s~dyi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~p~~-e~~~f 524 (524) T protein:vir:98 475 GVVGKYVSHKYIMKEILRMSDEDIDEQAKLIEEESKEERFKNPEA-EEENF 524 (524) T ss_pred cccccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCcCCcc-ccccC Confidence 1 12679988865 789999999877766555543333222211 11222 No 260 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=95.56 E-value=0.0018 Score=35.58 Aligned_cols=406 Identities=14% Similarity=0.089 Sum_probs=159.3 Q ss_pred CCCCC------HHHHHHHHHHHHHHH-H------------------HHHHHHHHHhhccCcccccCcccchhhhhhhhhh Q lcl|Aclame:pro 1 MTAST------PAEWLPVLTKRIDDG-M------------------SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA 55 (456) Q Consensus 1 ~~~~t------~~~~~~~l~~~~~~~-~------------------~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~ 55 (456) |-.+- +...-+.|..++..- . +..-....||-|.. +...++-+..+.+ T Consensus 1 ~~~~~~w~~~de~~~~~~~~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~-------~n~~eLI~~YR~m 73 (533) T protein:vir:58 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIE-------FNRFFLYDMYDRM 73 (533) T ss_pred CCCcchhhhhhHHHHHHHhhchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhcccc-------ccHHHHHHHHHHh Confidence 32211 111112222211110 0 00001122332210 1111122222223 Q ss_pred c--CChHHHHHHHHHHhhh-----cCCcccCCCccccHHHHH-HHHHHhcChhHHHHHHHHHHhhCCeeEEEEEe--CCC Q lcl|Aclame:pro 56 R--TNWGLMVRDSVADRII-----PNGITVGGSADSDLALRA-RRIWRDNRMDSVCKQWVKYGLDFGESYLTCWR--RDD 125 (456) Q Consensus 56 ~--~n~~~~iVd~~~~~l~-----g~~~~~~~~~d~~~~~~l-~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~--~~~ 125 (456) . +.=+..+|+..+.-.+ .+||.+.- ++.+..+.+ ..+..-.+|+....+.++...+.|+.|.|.-. .++ T Consensus 74 a~~~pEVd~AideIvneaiv~d~~~~pV~v~l-~~~e~s~~iK~kI~~lldf~~~~~~~fR~WYVDGriy~Hkiik~~k~ 152 (533) T protein:vir:58 74 DYTDPLISTVLDIIADECTIPNENGNIVDVVT-KDIELAKAILSYLDYVINIEKNAYPIIRNMIKYGDMFLHILEKGSDG 152 (533) T ss_pred hccCcchhhHHHhhhceeeEecCCCceeEeec-ccccccHHHHHHHHHHhcchhhhhHHHHhhhhcceeEEEeccCCccc Confidence 2 2344445554444332 33555432 122222222 23444567889999999999999999999854 234 Q ss_pred CceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccccccc Q lcl|Aclame:pro 126 GTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGD 205 (456) Q Consensus 126 g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (456) |-..++.++|+.+-.+++..+.. .+.+|.+...... .......++. ..+.. T Consensus 153 GI~elr~lDPr~i~~vr~~~t~~-----------------eyyvy~~~~~~~~-------s~~~~~kI~~-----daI~y 203 (533) T protein:vir:58 153 TIEKFQVVSPYIFSKRYNPETDT-----------------WYYVITDVYRNVV-------SGYFNEDIPE-----EDVIH 203 (533) T ss_pred chhhheecCCeeeEEEEeeccce-----------------EEEeecccccccc-------cCccccccch-----hheee Confidence 54478999999988887654431 2223433211100 0000000000 00011 Q ss_pred ccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccch------hhhhhh Q lcl|Aclame:pro 206 AVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENG------NAIDYA 278 (456) Q Consensus 206 ~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g------~~~~~~ 278 (456) .++++.. .+.+...|-+++.+...+.+- ++-|.+..-.....|-|=+.=.+.+ .+...... +..... T Consensus 204 ~~SGl~d-----~~~~~iisyLhkAiKp~NQLk-miEDAlVIYRisRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNk 277 (533) T protein:vir:58 204 FSHKIDT-----NFFPYGRSYLESARAIWNQLR-LMEDALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRD 277 (533) T ss_pred eeecccc-----CCCCceehhhhHHHHHHHHHH-HHHHHHHHHhhcCChhheEEEEeecCCCccCHHHHHHHHHHhcccc Confidence 1122111 112234455555433322221 1222222222222222211100100 00000000 000000 Q ss_pred hhhhhhccce----------------ee----cCCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhccccccch Q lcl|Aclame:pro 279 SIFEAAPGAL----------------WE----LPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQS 338 (456) Q Consensus 279 ~~~~~~~~~~----------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~S 338 (456) -+.+...|.+ |. ...+..+..++...+ +-++-++-+.+.++...++|..-++...+.-- T Consensus 278 lvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TLpGg~l-gemeDV~YF~kkLy~ALnVP~sRl~~e~~fgr 356 (533) T protein:vir:58 278 YWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKV-DLAEDVEYMLNRLISALKVPKAFIGYEGDVNA 356 (533) T ss_pred eEEeccCCeEeeccchhhhhhhHhhhcccccCCCccceeeecCCCCC-CcHHHHHHHHHHHHHHhCCCeeecCCCCCCcc Confidence 0000001111 11 011222333443333 22344566667888889999887765432112 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHHHHH----Hh-cCCCcH Q lcl|Aclame:pro 339 AEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAASLA----KA-AGESWA 413 (456) Q Consensus 339 g~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~~kl----~~-~g~~s~ 413 (456) +..|---...+..-+.+++..|..-|++-+ .+.|.-...++++.|.....-.+...++.+... .+ .+.+++ T Consensus 357 ~~eItRDEiKF~KFI~rLR~rF~~ll~~qL----ilk~iit~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk 432 (533) T protein:vir:58 357 KNTLATQDIKFNNTIKRIQGFFVEELERMV----RMNKEFADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVRE 432 (533) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhccc----ccccCcchhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhH Confidence 223322333355556666777776665522 245655555567778655444433333322221 11 367888 Q ss_pred HHHHH-hCCCCccHHHHHHHHHHHHHHHH-H------------------hhccccccc-----CCCCC Q lcl|Aclame:pro 414 SIRRN-ILNYNADQIKQDDLDRAREQITL-F------------------AGNPVQRPQ-----EDGSR 456 (456) Q Consensus 414 ~t~~~-~~~~~~~~~~~~e~~~~~e~~~~-~------------------~~~~~~~~~-----~~Gs~ 456 (456) ..+.+ +|.++++..++.+ .++++... . ..+|.+.|. +-|+. T Consensus 433 ~yi~k~ILr~tdei~~q~e--~ie~E~~~~~~~~~~~~~e~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 498 (533) T protein:vir:58 433 DWIYSNILQIPYDLKPQEE--VAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESPRGRTEFDFGTE 498 (533) T ss_pred HHHHHHHhcCChhhhHHHH--HHHHhhcCCCCCCCCcccccCCcccCccccCcccCCCChhhHhcccC Confidence 87764 6888865444332 22322110 1 111111100 00000 No 261 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=95.43 E-value=0.0021 Score=35.29 Aligned_cols=412 Identities=12% Similarity=0.054 Sum_probs=158.4 Q ss_pred CCCCCH--HHHHHHHHHHHHHHHH----HHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC Q lcl|Aclame:pro 1 MTASTP--AEWLPVLTKRIDDGMS----RVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN 74 (456) Q Consensus 1 ~~~~t~--~~~~~~l~~~~~~~~~----~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~ 74 (456) |...|. .+.++...+.+...+. +.+.+.+|.--. ...... .+....++..+-....++.+++.|.+- T Consensus 5 ~~~~~~~~~~~l~~r~~~L~~~R~~~e~~w~e~a~~~lP~---~~~~~~----~~~~~~~~~dstg~~a~~~LAa~l~~~ 77 (516) T protein:vir:96 5 IDLEYGGKRSKIPKLWEKFSNKRSSFLDRAKHYSKLTLPY---LMNDKG----DNETSQNGWQGVGAQATNHLANKLAQV 77 (516) T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc---ccCCCC----CccccCCcccchHHHHHHHHHHHHHhh Confidence 333333 2344444444444433 334444443321 100000 011111234455666777777766533 Q ss_pred ------C-cccCCCcc---------c---cHH-------HHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce Q lcl|Aclame:pro 75 ------G-ITVGGSAD---------S---DLA-------LRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA 128 (456) Q Consensus 75 ------~-~~~~~~~d---------~---~~~-------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~ 128 (456) | |++...++ . +.. ..+...+..++|.....++.++...+|.|-+ |.++++. T Consensus 78 ltpp~~~WF~L~~~~~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--~~d~~~~- 154 (516) T protein:vir:96 78 LFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCML--YKPSKGA- 154 (516) T ss_pred hcCCCCcccccccChhHHhhccccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeE--EecCCCC- Confidence 2 33322111 0 111 1234456677899999999999999999854 4566654 Q ss_pred EEEEEccceEEEEeeCCCCceeEEEEEEEEe-------cC-------------CceeEEEEEeCCeEEEEEEcccccccc Q lcl|Aclame:pro 129 TITADSPETMVVSVDPLQPWRIRAAMRWWRD-------LD-------------AESDFAIVWSGDGWQKFARPCFVQSSS 188 (456) Q Consensus 129 ~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~-------~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (456) ++.++-.+ +++.-+..++... .++.... .. +....+.+|+ .+... .. T Consensus 155 -~~~~pl~~-y~v~~d~~G~v~~-i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~------~v~~~----~~ 221 (516) T protein:vir:96 155 -ISAIPMHH-YVVNRDTNGDLLD-IILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVKLYT------HAKYL----GD 221 (516) T ss_pred -EEEEEcCe-EEEeeCCCCCeee-ehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceEEEE------eeeee----CC Confidence 55565555 4444334443333 3222110 00 0111222332 11110 01 Q ss_pred cceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCC Q lcl|Aclame:pro 189 RRRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTE 262 (456) Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~ 262 (456) .++.+....++..........+.-+|++.+ .+..|.|-.+..++-+..++...-......+....|...+. T Consensus 222 ~~~~~~~~~d~~~~~~es~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~~a~~~~~lv~--- 298 (516) T protein:vir:96 222 GFWELKQSADDIPVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAALMADIKYLIR--- 298 (516) T ss_pred ceeEEEEEeCceeeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCccccC--- Confidence 111111111111111111111222333222 23568898888888888888766666655555554433321 Q ss_pred ccccccccchhhhhhhhhhhhhccceeecCC-Ccceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHH Q lcl|Aclame:pro 263 HGLPNVDENGNAIDYASIFEAAPGALWELPP-GVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAE 340 (456) Q Consensus 263 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~ 340 (456) ++|.. ........+.|.+....+ +....++. ..+++.-...++.+...|....-+. ...-.++.+.++. T Consensus 299 -------p~g~~-~~~~l~~~~~g~i~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~-~l~~r~~~rvTAt 369 (516) T protein:vir:96 299 -------PGAQT-DVDHFVNSGTGEVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMME-TMTRRDAERVTAV 369 (516) T ss_pred -------ccccc-chhhhccCCCceeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhhh-hhccCCCccccHH Confidence 11110 011112222333332222 22222222 2334433344444444443321110 0001123345665 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCC-CccccceEEecCCCCCCHHHH---HHHHHHHHh- Q lcl|Aclame:pro 341 GAHNIEKGFLFKCEDRLSIAKIGLEAI--------LVKALQIEGE-SVEDTVDVSFESPDRVTLGEK---YSAASLAKA- 407 (456) Q Consensus 341 Al~~~~~~l~~k~~~~~~~f~~~l~~~--------~~l~~~~~g~-~~~~~i~v~f~~~~~~~~~e~---ad~~~kl~~- 407 (456) -++... +.++..++..+.++ +..++...+. .....+++.+-.+ .+.+.. ++.+....+ T Consensus 370 EV~~r~-------~E~~~~LGpv~~rl~~Ell~Pli~r~l~~~~p~lp~~~v~~~~vs~--l~~l~r~~~~~~i~~~~~~ 440 (516) T protein:vir:96 370 EIQRDA-------LEIEQNMGGVYSLFATTMQSPVAMWGLLEAGESFTSDLVDPVIITG--IEALGRMAELDKLANFAQY 440 (516) T ss_pred HHHHHH-------HHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccceeech--HHHHHHHHHHHHHHHHHHH Confidence 555433 34444455444432 1222222332 2222334433222 121221 222211110 Q ss_pred ----cCCCc--------HH---HHHHhCCCC------ccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 408 ----AGESW--------AS---IRRNILNYN------ADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 408 ----~g~~s--------~~---t~~~~~~~~------~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) +++.+ .+ .....+|.. +++++++.+++.+.+..+........+.++..+ T Consensus 441 i~~~~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~~~~~~~~q~~~~~a~~~~~~~~~~~~ 510 (516) T protein:vir:96 441 MSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMAQEQEAQMQAQQAQMLEEGVAKAVPGVIQ 510 (516) T ss_pred HHHHhcCChhHHhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhh Confidence 12211 11 122345543 334444443333333222222333333333333 No 262 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=95.34 E-value=0.0023 Score=35.10 Aligned_cols=420 Identities=10% Similarity=0.029 Sum_probs=161.2 Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC------C Q lcl|Aclame:pro 6 PAEWLPVLTKRIDDG----MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN------G 75 (456) Q Consensus 6 ~~~~~~~l~~~~~~~----~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~------~ 75 (456) =....+...+.+..+ ..+.+.+.+|..- .+.......-+....++..+-....++.+++.|.+- + T Consensus 1 mk~~a~~r~~~l~~~R~~~e~~w~e~~~y~lP-----~~~~~~~~~~~~~~~~~~dstg~~a~~~Laa~l~~~ltpp~~~ 75 (542) T protein:vir:78 1 MKGLAQARYSAMRADREDFLDMARRCAALTLP-----YLLTEDGHASGGRLQQPYQSLGSKGVNALSSKLMLSLFPIQTS 75 (542) T ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----ccCCCCCCcccccccccccchHHHHHHHHHHHHHHhhcCCCCc Confidence 001112222223222 3344445555321 111110011111222344556677777777777643 2 Q ss_pred -cccCCCc---------cccHH-----------HHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 76 -ITVGGSA---------DSDLA-----------LRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADS 134 (456) Q Consensus 76 -~~~~~~~---------d~~~~-----------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~ 134 (456) |++...+ +.+.. ..+...+..++|.....++.++...+|.|.++ .++++ ++.++ T Consensus 76 WF~l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~--~~~~~---~~~~p 150 (542) T protein:vir:78 76 FFKLQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAESSDRVQLTAAMKHLIVTGNVLVF--AGKKT---LKVYP 150 (542) T ss_pred cccccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEE--ecCCC---ceEEe Confidence 2332111 11111 12345566788999999999999999998655 45443 55565 Q ss_pred cceEEEEeeCCCCceeEEEEEEEEec-------CCc---------------eeEEEE----EeCCe--EEEEEEcccccc Q lcl|Aclame:pro 135 PETMVVSVDPLQPWRIRAAMRWWRDL-------DAE---------------SDFAIV----WSGDG--WQKFARPCFVQS 186 (456) Q Consensus 135 p~~~~~i~d~~~~~~~~~~i~~~~~~-------~~~---------------~~~~~~----~~~~~--~~~~~~~~~~~~ 186 (456) -.+..+--| ..+ .+..++|.++-. .+. ...+++ +.... +++.... T Consensus 151 l~~y~v~~d-~~G-~vd~v~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~~v~~~v~pr~~~~~~~~~~~----- 223 (542) T protein:vir:78 151 LDRYVIERD-GDG-NVIEIITRELVDRSLLPAEFQKQSLLEGKDSNAVGEDGPKFGVAQGKGGRNDAEVFTCCKL----- 223 (542) T ss_pred cceeEEeeC-CCC-CeEEEeeeeecCHHHHHHhhccccCchHHHhhccccCCCeEEEEEEeecccCCcccccccc----- Confidence 555444444 333 344455544311 010 001111 00000 0000000 Q ss_pred cccce-eeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhc Q lcl|Aclame:pro 187 SSRRR-LVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALK 259 (456) Q Consensus 187 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~ 259 (456) ...++ ......+........+..+.-+|++.. .+..|.|-.+..++-+..+|...-......+....|...+. T Consensus 224 ~~~~~s~~~e~~g~~v~~~~~e~g~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~pp~lv~ 303 (542) T protein:vir:78 224 VDGQHRWHQECDGKEIKGSRSSSPLKHSPWLPLRFNVVDGESYGRGRVEEFFGDLSSLDALTRSLIEGSAAAAKVVFMVS 303 (542) T ss_pred CCCeEEEEEEeccccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeec Confidence 00000 011111111100011222333343322 24578998899999999999888777777777777654431 Q ss_pred CCCccccccccchhhhhhhhhhhhhccceeecCCC-cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccc Q lcl|Aclame:pro 260 STEHGLPNVDENGNAIDYASIFEAAPGALWELPPG-VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ 337 (456) Q Consensus 260 G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~ 337 (456) .+|. .........+.|.+....++ ....++. ..++..-...++.+...|....-+ .. ..++... T Consensus 304 ----------~~g~-~~~~~~~~~~~g~iv~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~aFl~-~~--~~d~~rv 369 (542) T protein:vir:78 304 ----------PSAT-TKPQSLARAGTGAIIQGRAEDVSVVQANKGADFRTVQEMIRDLSQRISDAFLI-LN--VRQSERT 369 (542) T ss_pred ----------cccc-cchhhcccCCCceeecCCccceeeeecccccchhHHHHHHHHHHHHHHHHhcc-cc--cCCcccc Confidence 1110 01111223334444333222 2222222 234433333344444333322111 00 0122334 Q ss_pred hHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHhcC--CCccccceEEecCCCCCC-HHHHHHHH----HHH Q lcl|Aclame:pro 338 SAEGAHNIEKGFLFKCED----R-LSIAKIGLEAILVKALQIEG--ESVEDTVDVSFESPDRVT-LGEKYSAA----SLA 405 (456) Q Consensus 338 Sg~Al~~~~~~l~~k~~~----~-~~~f~~~l~~~~~l~~~~~g--~~~~~~i~v~f~~~~~~~-~~e~ad~~----~kl 405 (456) ++.-++.....+.....- . ...+.+-+.+.+.++.+..- .....-+++.+..++..- ..+.++.+ ..+ T Consensus 370 TAtEV~~r~~E~~~~LG~v~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~lv~~~~~s~La~~~r~~~~~~l~~~~~~i 449 (542) T protein:vir:78 370 TATEVREVQMELDRQLSGIYGSLTVELLTPYLNRKLHLMQRSKQLPSLPKGLVMPTVVAGLGGVGRGEDRAALIEFMQTV 449 (542) T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeeechHHHHHHHHHHHHHHHHHHHH Confidence 665555444443333322 1 12233444555555443221 122233566665554211 11112221 111 Q ss_pred Hh-cCC------CcHHH----HHHhCCCCc-------cHHHHHHHHHHHHHH-H---HHhhcccccc---------cCCC Q lcl|Aclame:pro 406 KA-AGE------SWASI----RRNILNYNA-------DQIKQDDLDRAREQI-T---LFAGNPVQRP---------QEDG 454 (456) Q Consensus 406 ~~-~g~------~s~~t----~~~~~~~~~-------~~~~~~e~~~~~e~~-~---~~~~~~~~~~---------~~~G 454 (456) .+ .|- +.-.. ....+|... ++++.+.++.++.+. . ..++..+..| .++| T Consensus 450 ~~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~~i~~s~e~~~~~~~q~q~~~~~~al~~~a~~~a~~~~~~~~~~~~~a~~ 529 (542) T protein:vir:78 450 GQAMGPEALQQFIDPTEFLKRLAAASGIDTLNLVKSPETMANEAQQAQQQQMTASLMGQAGQLAKSPIGEKMMQQINAPG 529 (542) T ss_pred HHhcCChhHHhcCCHHHHHHHHHHHcCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhcCCCC Confidence 11 111 11111 112345432 233322222211111 1 1112222212 2222 Q ss_pred C-C Q lcl|Aclame:pro 455 S-R 456 (456) Q Consensus 455 s-~ 456 (456) . + T Consensus 530 ~~~ 532 (542) T protein:vir:78 530 QEA 532 (542) T ss_pred cCC Confidence 1 1 No 263 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=95.22 E-value=0.0025 Score=34.84 Aligned_cols=410 Identities=11% Similarity=0.056 Sum_probs=160.1 Q ss_pred CC------CCCHHHHHHHHHHHHHHHH----HHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MT------ASTPAEWLPVLTKRIDDGM----SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~------~~t~~~~~~~l~~~~~~~~----~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~ 70 (456) |- .-+...+ +...+++..++ .+++.+.+|..-. ...+.. .+....++..+-....++.+++. T Consensus 1 ~~~~~~~~~~~~~~l-~~r~~~Lk~~R~~~e~~w~e~~~~tlP~---~~~~~~----~~~~~~~~~dstg~~a~~~LAa~ 72 (515) T protein:vir:70 1 MQDTILEYGGQRSKI-PKLWEKFSKKRSPYLDRAKHFAKLTLPY---LMNNKG----DNETSQNGWQGVGAQATNHLANK 72 (515) T ss_pred CcchhhhhcCCHHHH-HHHHHHHHHhhhHHHHHHHHHHHHhccc---ccCCCC----CcccccccccchHHHHHHHHHHH Confidence 21 2233332 23333333222 2344445553331 110010 01111123344556666776666 Q ss_pred hhcC------C-cccCCCc--cc------cHH-----------HHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC Q lcl|Aclame:pro 71 IIPN------G-ITVGGSA--DS------DLA-----------LRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD 124 (456) Q Consensus 71 l~g~------~-~~~~~~~--d~------~~~-----------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~ 124 (456) |.+- | |++...+ .+ ... ..+...+..++|.....++.++...+|.|-+++ ++ T Consensus 73 l~~~ltpp~~~WF~l~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~--d~ 150 (515) T protein:vir:70 73 LAQVLFPAQRSFFRVDLTAKGEKVLDDRGLKKTQLATIFARVETTAMKALEQRQFRPAIVEVFKHLIVAGNCLLYK--PS 150 (515) T ss_pred HHHhhcCCCCcccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhHCeEEEEE--eC Confidence 6533 2 2332111 00 111 123444667789999999999999999986554 55 Q ss_pred CCceEEEEEccceEEEEeeCCCCceeEEEEEEEEe-------cCC-------------ceeEEEEEeCCeEEEEEEcccc Q lcl|Aclame:pro 125 DGTATITADSPETMVVSVDPLQPWRIRAAMRWWRD-------LDA-------------ESDFAIVWSGDGWQKFARPCFV 184 (456) Q Consensus 125 ~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~-------~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 184 (456) ++. ++.++-.+ +++.-+..++ +..++|.++- ..+ ....+++| +..... T Consensus 151 ~~~--~~~~pl~~-y~v~~d~~G~-v~~i~rr~~~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i~------~~v~~~-- 218 (515) T protein:vir:70 151 KGA--MSAVPMHH-YVVNRDTNGD-LMDVILLQEKALRTFDPATRMAIEVGMKGKKCKEDDNVKLY------THAQYA-- 218 (515) T ss_pred CCC--eEEEEcCe-EEEeeCCCcC-eeEEEeeeeccHHHHHHhhhhhhhhhhhhhhcCCCCceEEE------EEEEec-- Confidence 554 55565555 4444334443 3334433321 000 01112222 221111 Q ss_pred cccccceeec-cCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh Q lcl|Aclame:pro 185 QSSSRRRLVT-RISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRA 257 (456) Q Consensus 185 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~ 257 (456) ...++.+. ...+. .........+.-+|++.+ .+..|.|-.+..++-+..+|...-......+....|... T Consensus 219 --~~~~~~~~~e~d~~-~~~~es~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~p~~l 295 (515) T protein:vir:70 219 --GEGFWKINQSADDI-PVGKESRIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAMARGAALMADIKYL 295 (515) T ss_pred --CCCceEEEEecCce-eeccccccccccCCceeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCCee Confidence 11111111 11111 111111111233333322 245689988999999988887777777666666665433 Q ss_pred hcCCCccccccccchhhhhhhhhhhhhccceeecCC-Ccceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccc Q lcl|Aclame:pro 258 LKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPP-GVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSA 335 (456) Q Consensus 258 i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~ 335 (456) +. ++|.. ........+.|.+....+ +....++. ..+++.-...++.+.+.|....-+. ...-.++. T Consensus 296 v~----------~~g~~-~~~~l~~~~~g~iv~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~-~l~~rd~~ 363 (515) T protein:vir:70 296 IR----------PGSQT-DVDHFVNSGTGEVITGVAEDIHIVQLGKYADLTPISAVLEVYTRRIGVIFMME-TMTRRDAE 363 (515) T ss_pred eC----------ccccc-chhhccccCCceeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhhh-hhhccCCc Confidence 31 11110 011111222233333222 22222322 2344433344444444443211111 01111222 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCC-CccccceEEecCCCCCCHHHH---HHHHH Q lcl|Aclame:pro 336 NQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAI--------LVKALQIEGE-SVEDTVDVSFESPDRVTLGEK---YSAAS 403 (456) Q Consensus 336 n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~--------~~l~~~~~g~-~~~~~i~v~f~~~~~~~~~e~---ad~~~ 403 (456) +.++.-++. +.++++..++..+.++ +.+++.-.+. .....+++.+-. +.+.+.. ++.+. T Consensus 364 rvTAtEV~~-------r~~E~~~~LGpv~srL~~Ell~Pli~r~~~~~~p~~P~~~v~~~~vs--~l~~L~r~q~~~~i~ 434 (515) T protein:vir:70 364 RVTAVEIQR-------DALEIEQNMGGVYSLFAMTMQTPIAMWGLQEAGDSFTSELVDPVIVT--GIEALGRMAELDKLA 434 (515) T ss_pred cccHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhcccceeh--hHHHHHHHHHHHHHH Confidence 345555543 3344445555555443 2222222221 112223433322 2222222 22221 Q ss_pred HHHh-----cCCCc--------H---HHHHHhCCC------CccHHHHHHHHHHHHHHHHHhhcc----cccccCCCCC Q lcl|Aclame:pro 404 LAKA-----AGESW--------A---SIRRNILNY------NADQIKQDDLDRAREQITLFAGNP----VQRPQEDGSR 456 (456) Q Consensus 404 kl~~-----~g~~s--------~---~t~~~~~~~------~~~~~~~~e~~~~~e~~~~~~~~~----~~~~~~~Gs~ 456 (456) ...+ +++.. . +.+....|. ++++++++.+++++.+..++.... +..+..|.+| T Consensus 435 ~~~q~i~~~~~~~p~~~~~id~d~~~~~~a~~~g~p~~~~rs~eev~~~r~q~~~~~~~~~~~~~~~~a~~~~~~~~~~ 513 (515) T protein:vir:70 435 NFAQYMSLPQTWPEPAQRAIRWGDYMDWVRGQISAELPFLKSEEEMQQEMAQQAQAQQEAMLNEGVAKAVPGVIQQEMK 513 (515) T ss_pred HHHHHHHHHhccChhHHhhCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhc Confidence 1111 11111 1 112233332 234555555554443333333333 3333444444 No 264 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=95.03 E-value=0.0029 Score=34.47 Aligned_cols=299 Identities=10% Similarity=-0.012 Sum_probs=109.5 Q ss_pred ccCcccccCcccchhh---hhhhhhhcCChHHHHHHHHHHhhh----cCCcccCCCccccHHH----------------- Q lcl|Aclame:pro 33 GDAPLPELTRNTSAAW---RSFQREARTNWGLMVRDSVADRII----PNGITVGGSADSDLAL----------------- 88 (456) Q Consensus 33 g~~~i~~~~~~~~~~~---~~~~~k~~~n~~~~iVd~~~~~l~----g~~~~~~~~~d~~~~~----------------- 88 (456) -+.. ++.+... ....+..+..|.-.+--...+|+- .+|=-+..+=+-+... T Consensus 1 ~~~~-----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~k~ 75 (345) T protein:vir:37 1 MKTN-----VKTDNKKGIVIAPINDRTFSLNEISASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRA 75 (345) T ss_pred CCCC-----ccccchhhcccCcceeEEeecCCcccccchhhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceeeec Confidence 0000 0000000 000000111121111111222221 0100000000000000 Q ss_pred -HHHHHHHhcC-h-hHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEecCCce Q lcl|Aclame:pro 89 -RARRIWRDNR-M-DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAES 164 (456) Q Consensus 89 -~l~~~~~~n~-~-~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~ 164 (456) .+...+.-|. + ...+.+++.+.+.+|.||+.+-.+..|++ .+..++|..+.+..|... ...++++....+ . T Consensus 76 n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~----~~~~~~~~~~~~-g 150 (345) T protein:vir:37 76 NMVSSLYEGGKALSRMDMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGY----SYLMKKSLYDTA-Q 150 (345) T ss_pred hHHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCe----eEEEEEeEecCC-c Confidence 0111112221 1 12345678899999999999999988876 478888888776554321 112222211111 1 Q ss_pred eEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 165 DFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINRAELQL 244 (456) Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~ 244 (456) . ...|.++.+.++... + | ...-.|.|.+...+. ++....+-. T Consensus 151 ~-~~~~~~~dVihir~~--------------------------~-----~---~~~~~Gls~~~~a~~---si~l~~~a~ 192 (345) T protein:vir:37 151 E-IYRYDAKDIIFIKLY--------------------------D-----P---MQQVYGSPDYVGGIQ---SALLNSDAT 192 (345) T ss_pred e-EEEEccccEEEecCC--------------------------C-----C---CCCcccccHHHHHHH---HHHHHHHHH Confidence 1 111222333222100 0 0 000135565544332 222221111 Q ss_pred HHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhhhh-----ccceeec-----CCCcceeeccccc-hHHH Q lcl|Aclame:pro 245 LSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFEAA-----PGALWEL-----PPGVDIWESQAND-FTPM 308 (456) Q Consensus 245 ~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~-~~~~ 308 (456) .-...+|.+ |-.++ ++.... +++-+.+. ..++.. .+.++.. +.+.++..+.... -..| T Consensus 193 ~~~~~~f~NG~~p~~Il~~~d~~l~----~e~~~~lk--~~~~~~~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf 266 (345) T protein:vir:37 193 VFRRRYFSNGAHMGFILYSTDPDLT----EEMEEEIA--RKISESKGVGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEF 266 (345) T ss_pred HHHHHHHhccCCcceEEEecCCCCC----HHHHHHHH--HHHHHhcCcccccceEEEcCCCcccceEEEEccCChhHHHH Confidence 111233333 22222 222221 11111111 111111 1223333 2344444443322 2247 Q ss_pred HHHHHHHHHHHHhhcCCChhhhccccccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEE Q lcl|Aclame:pro 309 LSAIKEHIRQLSSATKTPLPMLMPDSANQS--AEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVS 386 (456) Q Consensus 309 ~~~~~~~~~~i~~~t~~p~~~~~~~~~n~S--g~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~ 386 (456) ++..+....+|+++-++|+..+|....|.+ +.+-+....=....+.=+++.|...+.++. .+ .....+. T Consensus 267 ~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~~~----~~-----~~~~~i~ 337 (345) T protein:vir:37 267 ANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDP----EI-----KNLLKIK 337 (345) T ss_pred HHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhc----cC-----CCcceEE Confidence 888888889999999999999874322221 111122222122222233344444443321 11 1233466 Q ss_pred ecCCCCCCHHH Q lcl|Aclame:pro 387 FESPDRVTLGE 397 (456) Q Consensus 387 f~~~~~~~~~e 397 (456) |.+.. +++ T Consensus 338 F~~~~---L~~ 345 (345) T protein:vir:37 338 FREQN---FAK 345 (345) T ss_pred ecchh---hcC Confidence 76442 222 No 265 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=94.98 E-value=0.003 Score=34.39 Aligned_cols=424 Identities=10% Similarity=0.069 Sum_probs=166.9 Q ss_pred CCCCCHHHHHHHHHHHHHH------------------HHHHHHHHHHHhhccCcccccCcccchhhhhhhhh-hcCChHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDD------------------GMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQRE-ARTNWGL 61 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~------------------~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k-~~~n~~~ 61 (456) -....+.+.-+.+...... ..+..-....||-+-.. ..+...++-+..+. +.++=+- T Consensus 14 ~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~----~~~~~~eLI~~YR~ma~~pEvd 89 (524) T protein:vir:10 14 WANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEP----EVKNTRELIDTYRNLMNNYEVD 89 (524) T ss_pred hhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccc----hhhhHHHHHHHHHHHhhccchh Confidence 0000000000000000000 00000000111111000 00000001111111 1111222 Q ss_pred HHHHHHHHhh-----hcCCcccCCC-------ccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeC----CC Q lcl|Aclame:pro 62 MVRDSVADRI-----IPNGITVGGS-------ADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR----DD 125 (456) Q Consensus 62 ~iVd~~~~~l-----~g~~~~~~~~-------~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~----~~ 125 (456) .+|+..+.=. ..+||.+.-+ -.+....++..++.--+|+....+..+...+.|+-|.|.-.| .+ T Consensus 90 ~Av~eIVneaiv~d~~~~pV~l~Ld~~~~s~siK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~ 169 (524) T protein:vir:10 90 NAVQEIVSDAIVYEDDKEVVALNLDGTDFSQSIKDKILAEFSEVLNLLNFQRKGTDHFQRWYVDSRIFFHKIINPKKMKD 169 (524) T ss_pred hHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeceEEEEEEeeCCCccc Confidence 2222222211 1234443221 112234556666766788999999999999999999997554 35 Q ss_pred CceEEEEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCccccccc Q lcl|Aclame:pro 126 GTATITADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGD 205 (456) Q Consensus 126 g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (456) |-..++.++|+.+-.+.--.. +....+..+ ....+..+|.++.-. +...+... ..+....++. T Consensus 170 GI~Elr~lDPr~i~~vr~i~~--~~~~~~~vi----~~~~e~f~Y~~~~~~-~~~~~~~~----------~~~~~ikI~~ 232 (524) T protein:vir:10 170 GVQELRRLDPRQVQYIREIVT--RMEDGVKIV----DGYREFFVYDTGHES-YCADGRIY----------SAGTKVKIPR 232 (524) T ss_pred cceeeeeeCCccceeeeeecc--cCcccchhh----cchhhheeecCCCcc-cccCccee----------cCCcceecch Confidence 666788999998755542111 001111111 112223344332111 00000000 0111110110 Q ss_pred ccccCceeEEEEec-------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcc-ccccccchh--hh Q lcl|Aclame:pro 206 AVVTGSPPPVVVYQ-------NPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHG-LPNVDENGN--AI 275 (456) Q Consensus 206 ~~~~~~~~pv~~~~-------n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~-~~~~d~~g~--~~ 275 (456) . -|+|.. +..=.|-+++.+...+.+ +++-|.+..-.....|.|=+.=.+.+ .+......- -+ T Consensus 233 d-------AIvy~~SGL~d~~~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~i 304 (524) T protein:vir:10 233 A-------AVVYAHSGLLDCCGKNIIGYLQRAIKPANQL-KLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHI 304 (524) T ss_pred h-------heeeeccCcccCCCCceeccchHhhHHHHhh-HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHH Confidence 0 122211 111123333322211111 12222222222222222221100000 000000000 00 Q ss_pred ----hhhhhhhhhccc-------------eeec----CCCcceeeccccchHHHHHHHHHHHHHHHhhcCCChhhhcccc Q lcl|Aclame:pro 276 ----DYASIFEAAPGA-------------LWEL----PPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS 334 (456) Q Consensus 276 ----~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~ 334 (456) ...-+.++..|. .|.- ..+..+..++...--+-++-++-+.+.++...++|..-+.... T Consensus 305 m~k~kNKlvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~ 384 (524) T protein:vir:10 305 MNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTMPGATGMSDMDDVLYFRTALYRALRIPESRIPSES 384 (524) T ss_pred HHhcCceeEEeccCCeeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCCCchhccCCC Confidence 000000000010 0110 1122233333322112233455556678888899988884321 Q ss_pred c---cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccceEEecCCCCCCHHHHHH--- Q lcl|Aclame:pro 335 A---NQ-SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESV-------EDTVDVSFESPDRVTLGEKYS--- 400 (456) Q Consensus 335 ~---n~-Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~-------~~~i~v~f~~~~~~~~~e~ad--- 400 (456) . |. -+..|---+..+..-+.+++..|..-|.++++.=+-+.|.-. ...|.+.|.....-.+...++ T Consensus 385 ~~~f~~gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~ 464 (524) T protein:vir:10 385 NSGVMFDAGTAITRDELKFAKWIRQLQNKFEEIFLDPLKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIME 464 (524) T ss_pred CccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHH Confidence 1 11 344555556666777888999999999999887666666421 135778886654444433333 Q ss_pred ----HHHHHHh--cCCCcHHHHHH-hCCCCccHHHHHHHHHHHHHHHHHhhcccccccCCC Q lcl|Aclame:pro 401 ----AASLAKA--AGESWASIRRN-ILNYNADQIKQDDLDRAREQITLFAGNPVQRPQEDG 454 (456) Q Consensus 401 ----~~~kl~~--~g~~s~~t~~~-~~~~~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~G 454 (456) ++..+.. +..+|.+++++ .|.+++++++++..+.++|.-......+.+.. +|= T Consensus 465 ~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~~~~~~~-~~f 524 (524) T protein:vir:10 465 RRINMLTMAEPFIGKYISHQTAMKDFLQMTDEEINQEAKQIEEESKEARFQNPDEEE-EDF 524 (524) T ss_pred HHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCCChhh-hcC Confidence 3332221 12469988865 78999998888776655554333332222211 111 No 266 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=94.62 E-value=0.0039 Score=33.78 Aligned_cols=412 Identities=12% Similarity=0.047 Sum_probs=161.4 Q ss_pred CCCCCHHHHH---HHHHHHHH---HHHH----HHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHh Q lcl|Aclame:pro 1 MTASTPAEWL---PVLTKRID---DGMS----RVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADR 70 (456) Q Consensus 1 ~~~~t~~~~~---~~l~~~~~---~~~~----~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~ 70 (456) |-+.+.+.+- +.|.+.|+ .++. +.+.+.+|.-- -...+.. .+....++..+-....++.+++. T Consensus 1 ~~~~~~~~~~~~~~~l~~r~~~L~~~R~~~e~~w~e~a~~~lP---~~~~~~~----~~~~~~~~~dstg~~a~~~LAa~ 73 (516) T protein:vir:10 1 MKQSTDLEYGGKRSKIPKLWEKFSTKRSSFLDRAKHYSKLTLP---YLMNDKG----DNETSQNGWQGVGAQATNHLANK 73 (516) T ss_pred CCchhhHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcc---cccCCCC----CcccccccccchHHHHHHHHHHH Confidence 8777766532 34433333 2222 23333444322 1110111 11111124445566677777776 Q ss_pred hhcC------C-cccCCCcc--c------c----HH-------HHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCC Q lcl|Aclame:pro 71 IIPN------G-ITVGGSAD--S------D----LA-------LRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRD 124 (456) Q Consensus 71 l~g~------~-~~~~~~~d--~------~----~~-------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~ 124 (456) |.+- | |++...+. + . .. ..++..+..++|.....++.++...+|.|- +|.++ T Consensus 74 l~~~ltpp~~~WF~L~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~--l~~d~ 151 (516) T protein:vir:10 74 LAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCM--LYKPS 151 (516) T ss_pred HHhhhcCCCCccccccCChhhHhhhhccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEe--EEecC Confidence 6533 2 23322111 0 0 11 123445667789999999999999999985 45566 Q ss_pred CCceEEEEEccceEEEEeeCCCCceeEEEEEEEEe-------cC-------------CceeEEEEEeCCeEEEEEEcccc Q lcl|Aclame:pro 125 DGTATITADSPETMVVSVDPLQPWRIRAAMRWWRD-------LD-------------AESDFAIVWSGDGWQKFARPCFV 184 (456) Q Consensus 125 ~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~-------~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 184 (456) ++. ++.++-.+ +++.-+..++ +...++..+- .. +....+.+|+ .... T Consensus 152 ~~~--~~~~pl~~-y~v~~d~~G~-v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~i~t------~v~~--- 218 (516) T protein:vir:10 152 KGA--ISAIPMHH-YVVNRDTNGD-LLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDSIKLYT------HAKY--- 218 (516) T ss_pred CCC--eEEEEcCe-EEEeeCCCCC-eEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCceEEEE------EEEe--- Confidence 654 55555555 4444344443 3333333220 00 0111222222 1000 Q ss_pred cccccceeeccCCCcccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh Q lcl|Aclame:pro 185 QSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRAL 258 (456) Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i 258 (456) ....++.+....+...........+.-+|++.+ .+..|.|-.+..++-+..++...-...........|...+ T Consensus 219 -~~~~~~~~~~~~d~~~~~~~s~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~~a~~~~~lv 297 (516) T protein:vir:10 219 -LGEGFWELKQSADDIPVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAALMADIKYLI 297 (516) T ss_pred -cCCCceEEEEeeCceeeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccc Confidence 011112211111111111111111222333222 2356889888888888888866655555555555443332 Q ss_pred cCCCccccccccchhhhhhhhhhhhhccceeecCCC-cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhcccccc Q lcl|Aclame:pro 259 KSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPG-VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN 336 (456) Q Consensus 259 ~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n 336 (456) . ++|.. ........+.|.+....++ ....++. ..+++.-...++.+...|....-+.. ..-.++.+ T Consensus 298 ~----------p~g~~-~~~~l~~~~~g~~~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~~-l~~rd~~r 365 (516) T protein:vir:10 298 R----------PGAQT-DVDHFVNSGTGEVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMMET-MTRRDAER 365 (516) T ss_pred C----------ccccc-chhhhccCCCceeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHhhhh-hhccCCcc Confidence 1 11110 0111122233333332222 2222322 23444333444444444432211110 01112233 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhcC-CCccccceEEecCCCCCCHHHHHHHHHHH-- Q lcl|Aclame:pro 337 QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAIL--------VKALQIEG-ESVEDTVDVSFESPDRVTLGEKYSAASLA-- 405 (456) Q Consensus 337 ~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~--------~l~~~~~g-~~~~~~i~v~f~~~~~~~~~e~ad~~~kl-- 405 (456) .++.-++.. .+.++..++..+.++- ...+...+ .....-+.+.. ..+.+....++-+..+ T Consensus 366 vTAtEV~~r-------~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~~~p~~P~~lv~~~~--v~~i~~L~raq~~~~i~~ 436 (516) T protein:vir:10 366 VTAVEIQRD-------ALEIEQNMGGVYSLFATTMQSPVAMWGLLEAGDSFTSDLVDPVI--ITGIEALGRMAELDKLAN 436 (516) T ss_pred ccHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCChhhcCcce--ehhHHHHHHHHHHHHHHH Confidence 566555533 3344444444443321 11111112 11111122221 1122222222211111 Q ss_pred -Hh-----cCCCc-----------HHHHHHhCCCC------ccHHHHHHHHHHHHHHHHHhhcccccccCCCCC Q lcl|Aclame:pro 406 -KA-----AGESW-----------ASIRRNILNYN------ADQIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 406 -~~-----~g~~s-----------~~t~~~~~~~~------~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~Gs~ 456 (456) .+ +++.+ -+.....+|.. +++++++.+++.+.+..+++...+....+++-+ T Consensus 437 ~~q~i~~~~q~~p~v~d~id~d~~~~~~a~~~gvp~~~irs~eev~~~r~~~~~~q~~~~~~~~~~~~~~~~~~ 510 (516) T protein:vir:10 437 FAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMEQEQEAQMQAQQAQMLEEGVAKAVPGVIQ 510 (516) T ss_pred HHHHHHHHhcCChHHHhhcCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh Confidence 11 12221 12233344432 345555555554444444433333333344444 No 267 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=94.21 E-value=0.0051 Score=33.17 Aligned_cols=298 Identities=13% Similarity=0.037 Sum_probs=101.3 Q ss_pred HHHHHHHhhccCc-cc------ccCcccch----hhhhhh----hhhcCChHHHHHHHHHHhhhcCCcccCCCcc----c Q lcl|Aclame:pro 24 VRLLARYSNGDAP-LP------ELTRNTSA----AWRSFQ----REARTNWGLMVRDSVADRIIPNGITVGGSAD----S 84 (456) Q Consensus 24 ~~~~~~YY~g~~~-i~------~~~~~~~~----~~~~~~----~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d----~ 84 (456) ..|.++.-..... .+ ........ .+++.. ++-+.+|....- .+....-||...+=.. + T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~~---~~~~~~pp~~~~~la~~~~~~ 77 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWP---NGRWYEPPLSMEGLAKSVGSS 77 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHhh---cCccccCCCCHHHHHHHHhhh Confidence 0000000000000 00 00000000 000000 000011111000 0111111111100000 0 Q ss_pred -----cHH---HHHHHHHHhcC-h-hHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEE Q lcl|Aclame:pro 85 -----DLA---LRARRIWRDNR-M-DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAA 153 (456) Q Consensus 85 -----~~~---~~l~~~~~~n~-~-~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) .+. ..+...+.-|. + ...+.+++.+.+.+|.||+.+-++..|++ .+..++|..+.+..+.. T Consensus 78 ~~h~~~l~~k~n~l~~~~~Pn~~~t~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~~~~-------- 149 (350) T protein:vir:11 78 VYLQSGLKFKRNMLAKTFIPHRLLSRATFEQFSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDLE-------- 149 (350) T ss_pred hhhccchhhhhhhhhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeeecCC-------- Confidence 000 00001111222 1 22356788889999999999999988876 47777777665543221 Q ss_pred EEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHH Q lcl|Aclame:pro 154 MRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDI 233 (456) Q Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~l 233 (456) .+|....+.. ...|.++.+.++... .|. ..-.|.|.+...+ T Consensus 150 -~~~~~~~~~~--~~~~~~~eVihir~~-------------------------------~~~---~~~yGls~~~~a~-- 190 (350) T protein:vir:11 150 -TFYQVRSWKD--EHEFEKGSVIQLREA-------------------------------DIN---QEIYGVPEWFCAL-- 190 (350) T ss_pred -eEEEEeeCCe--EEEECcccEEEeCCC-------------------------------CCC---CCcccccHHHHHH-- Confidence 0111111111 011223333322100 000 0012555554433 Q ss_pred HHHHHHHHHHHHHHHHHHhh---hHHh--hcCCCccccccccchhhhhhhhhhhh-----hccceeecCCC-----ccee Q lcl|Aclame:pro 234 INRINRAELQLLSTMAIQAF---RQRA--LKSTEHGLPNVDENGNAIDYASIFEA-----APGALWELPPG-----VDIW 298 (456) Q Consensus 234 iD~~~~~~s~~~~~~~~~~~---~~~~--i~G~~~~~~~~d~~g~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~ 298 (456) +++....+-..-...+|.+ |--+ +.|..... ++-+.+. ..+.. ..+.++...++ .++. T Consensus 191 -~si~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~----e~~~~l~--~~~~~~~G~~N~~~~~v~~~~g~~~g~~~~ 263 (350) T protein:vir:11 191 -QSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNE----EDIDALR--TALKTAKGPGNFRNLFVYAPNGKKEGIQLI 263 (350) T ss_pred -HHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH----HHHHHHH--HHHHHhcCccccCceeeecCCCCccceEEE Confidence 3332222111111233332 2122 22322221 1111111 11111 11233443332 3443 Q ss_pred eccccch-HHHHHHHHHHHHHHHhhcCCChhhhcccccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 299 ESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSAN------QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKA 371 (456) Q Consensus 299 ~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n------~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~ 371 (456) .+..... ..|++..+....+|++.-++|+..+|....| +...+..+....|.=.+ +.|.. +.+ T Consensus 264 pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~L~P~~----~~ie~----ln~-- 333 (350) T protein:vir:11 264 PVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLELAPMQ----TRLQQ----VNE-- 333 (350) T ss_pred EcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHHH----HHHHH----HHh-- Confidence 3332221 2488888888899999999999999743222 22223333333332222 22221 111 Q ss_pred HHhcCCCccccceEEecCCCCCCH Q lcl|Aclame:pro 372 LQIEGESVEDTVDVSFESPDRVTL 395 (456) Q Consensus 372 ~~~~g~~~~~~i~v~f~~~~~~~~ 395 (456) ..+.. .+.|.+.....+ T Consensus 334 --~l~~~-----~~~F~~~~~~~l 350 (350) T protein:vir:11 334 --MIGEE-----VVRFAQFDAPGL 350 (350) T ss_pred --hcCcc-----ccccCcccccCC Confidence 11211 122433322222 No 268 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=94.20 E-value=0.0051 Score=33.16 Aligned_cols=313 Identities=8% Similarity=-0.100 Sum_probs=116.5 Q ss_pred CCCCCHHHHHHHHHHH-----HH-------HHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHH Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKR-----ID-------DGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVA 68 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~-----~~-------~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~ 68 (456) ||..++....+.-..+ +. ....-++.+.=+|.|.-+. +.|.-....+.+..+ ...++.-++.... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~epp~~~~~La~l~~--~n~~h~~~i~~k~ 77 (348) T protein:vir:26 1 MTEQLIHSHTTDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDY-WEPPISLKGLAEIAN--ANGYHGSLLKARA 77 (348) T ss_pred CCccccchhhccccCCceEEEecCCCeeecCcchHHHHHHHHhcCCCcc-ccCCCCHHHHHHHHh--hhhhhhhhHhhhh Confidence 4433322111100000 00 0001133344445443222 122222223333321 1235555555555 Q ss_pred HhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCC Q lcl|Aclame:pro 69 DRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQP 147 (456) Q Consensus 69 ~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~ 147 (456) ..+.+. ++.. +.- . . ..+.+++.+.+.+|.||+.+-++..|++ .+..++|..+.+.-|. T Consensus 78 N~l~~~-~~Pn-~~~-t-~-------------~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d~--- 137 (348) T protein:vir:26 78 NYVAGR-FMNG-GGL-P-M-------------YKMNSACWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKNG--- 137 (348) T ss_pred hHHhhc-ccCC-CCC-C-H-------------HHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeecC--- Confidence 554432 1110 000 0 0 1123456677889999999999998876 4777777665543221 Q ss_pred ceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchH Q lcl|Aclame:pro 148 WRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEV 227 (456) Q Consensus 148 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~ 227 (456) . .++...++. ...|.++.+.++... + | ...-.|.|.+ T Consensus 138 -~-----~~~~~~~g~---~~~f~~~dIiHir~~--------------------------~-----~---~~~~~Gls~~ 174 (348) T protein:vir:26 138 -D-----FVQLLRNNE---QKVFKAKDVIFIPQY--------------------------D-----P---QQQIYGLPDY 174 (348) T ss_pred -c-----EEEEEecCe---EEEEcCccEEEEcCC--------------------------C-----C---CCCcccccHH Confidence 0 111111111 112333333332100 0 0 0001255554 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhhhh-----ccceeecC----- Q lcl|Aclame:pro 228 EPHIDIINRINRAELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFEAA-----PGALWELP----- 292 (456) Q Consensus 228 ~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~~~-----~~~~~~~~----- 292 (456) ...+ .++....+-..-...+|.+ |-.++ ++.... +++-+.+. ..+... .+.++... T Consensus 175 ~~a~---~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls----~e~~~~lk--~~~~~~~G~~n~~~~~vl~~~g~~ 245 (348) T protein:vir:26 175 LGSI---QSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLS----EADEKALK--EKIASSKGIGNFRSMFVNIPNGKE 245 (348) T ss_pred HHHH---HHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC----HHHHHHHH--HHHHHhcCcccccceeEEcCCCCc Confidence 4433 2222221111111233332 22222 222221 11111111 111111 12233332 Q ss_pred CCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 PGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSA------NQSAEGAHNIEKGFLFKCEDRLSIAKIGLE 365 (456) Q Consensus 293 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~------n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~ 365 (456) .+.++..+..... ..|++..+....+|++.-++|+..+|.... |+...+..+....|. =+++.+..++. T Consensus 246 ~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~----P~~~~ie~~ln 321 (348) T protein:vir:26 246 KGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVI----PVCKRFMDAVN 321 (348) T ss_pred cceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHH----HHHHHHHHHHh Confidence 2334444432222 248887788888999999999998874221 222222223222222 22333333332 Q ss_pred HHHHHHHHhcCCCccccceEEecCCCCCCHHHHHHHH Q lcl|Aclame:pro 366 AILVKALQIEGESVEDTVDVSFESPDRVTLGEKYSAA 402 (456) Q Consensus 366 ~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e~ad~~ 402 (456) +- .+......+++.+.+.. ++..+-|+ T Consensus 322 ~~-------l~~~~~~~~~fdl~~~~---e~~~~~a~ 348 (348) T protein:vir:26 322 ND-------PEIPDNLKLKFNLNPGV---ESANGSAV 348 (348) T ss_pred hh-------hCCCCccEEEEecCccc---ccchhhcC Confidence 21 12222222333333221 11111111 No 269 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=93.75 E-value=0.0065 Score=32.57 Aligned_cols=292 Identities=12% Similarity=0.048 Sum_probs=109.3 Q ss_pred CCC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhh Q lcl|Aclame:pro 1 MTA-------------------------STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA 55 (456) Q Consensus 1 ~~~-------------------------~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~ 55 (456) ||- .+|+-.+. ...-++.+.-++.|+. +.|.-....+.+..+ + T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~--------~~~~~~~~~~~~~~~~---~~pp~~~~~la~~~~-a 68 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLD--------RRDILDYVECISNGRW---YEPPVSFTGLAKSLR-A 68 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEEcCCceeecC--------cchhhhHHHhhhcCcc---ccCCCCHHHHHHHHh-h Confidence 331 11111110 0011333444455542 122222222222211 0 Q ss_pred cCChHHHHHHHHHHhhh----cCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EE Q lcl|Aclame:pro 56 RTNWGLMVRDSVADRII----PNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TI 130 (456) Q Consensus 56 ~~n~~~~iVd~~~~~l~----g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i 130 (456) ..++.-++..+...+. .+|... . ..+..++.+.+.+|.||+.+-.+..|++ .+ T Consensus 69 -~~~h~s~i~~k~n~l~~~~~Pnp~~t--------~-------------~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L 126 (344) T protein:vir:56 69 -AVHHSSPIYVKRNILASTFIPHPWLS--------Q-------------QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRL 126 (344) T ss_pred -hhhhCccceehhhhHHhhcCCCCCCC--------H-------------HHHHHHHHHHHhcCCeEEEEEECCCCcEEEE Confidence 1122223322333322 222110 0 1123456677889999999988888876 46 Q ss_pred EEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccC Q lcl|Aclame:pro 131 TADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTG 210 (456) Q Consensus 131 ~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (456) ..++|..+.+..+.. ++|....+.. ...|.++.+.++... T Consensus 127 ~pl~~~~v~~~~~~~---------~~~~~~~~g~--~~~~~~~dIiHir~~----------------------------- 166 (344) T protein:vir:56 127 ETSPAKYTRRGVEED---------VYWWVPSFNE--PTAFAPGSVFHLLEP----------------------------- 166 (344) T ss_pred EEeCCceeEEeecCC---------EEEEEecCCe--EEEEcCccEEEECCC----------------------------- Confidence 777777665543321 1111111110 112233333332100 Q ss_pred ceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhh--- Q lcl|Aclame:pro 211 SPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFE--- 282 (456) Q Consensus 211 ~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~--- 282 (456) .| ...-.|.|.+.. .++++....+-..-...+|.+ |-.++ +|.... ++.-+.+. ..+. T Consensus 167 --~~---~~~~~Gls~~~~---a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls----~e~~~~lk--~~~~~~~ 232 (344) T protein:vir:56 167 --DI---NQELYGLPEYLS---ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD----RNDIEMLR--ENMVKSK 232 (344) T ss_pred --CC---CCCcccccHHHH---HHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC----HHHHHHHH--HHHHHhc Confidence 00 000125554443 233333222222222344433 22222 232221 11111111 1111 Q ss_pred -hhccce--eecC----CCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccc------hHHHHHHHHHH Q lcl|Aclame:pro 283 -AAPGAL--WELP----PGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ------SAEGAHNIEKG 348 (456) Q Consensus 283 -~~~~~~--~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~------Sg~Al~~~~~~ 348 (456) .+.++. +..+ ++.++..+..... ..|++..+....+|++.-++|+..+|....|. ...+..+.... T Consensus 233 g~~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~~f~~~t 312 (344) T protein:vir:56 233 GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNE 312 (344) T ss_pred CCCCccceEEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHH Confidence 112222 2222 3445554443222 24888888888999999999999987432222 12222222222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHH Q lcl|Aclame:pro 349 FLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGE 397 (456) Q Consensus 349 l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e 397 (456) |.=.+ +.|. ++... .|.. .+.|.+......-. T Consensus 313 L~Pl~----~~ie----~~n~~----l~~~-----~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 313 LIPLQ----DRIR----EINGW----IGQE-----VIRFKNYSLDTDNG 344 (344) T ss_pred HHHHH----HHHH----HHHhh----hccc-----cccCCCccccccCC Confidence 22222 2222 11111 1211 13344443221111 No 270 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=93.59 E-value=0.007 Score=32.38 Aligned_cols=303 Identities=13% Similarity=0.037 Sum_probs=116.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) +|-.+|+-.+. ...-++.++-+|.|+. +.|.-....+.+..+ ...++.-++......+.+. ++. T Consensus 31 ~~~~~p~~v~~--------~~~~~~~~~~~~~~~~---~~pp~~~~~la~~~~--~~~~h~~~l~~k~n~l~~~-~~P-- 94 (351) T protein:vir:78 31 FTFDDPTPVMN--------RAEILDYVECWSNGEW---FEPPVSFAGLAKSFR--ASTHHSSALFFKANVLAST-FRP-- 94 (351) T ss_pred EEcCCceeecC--------cchhhhhhhhhccCce---ecCCCCHHHHHHHHh--hhHhhhhhhhhhhhHHhhc-ccC-- Confidence 11112221110 0112344566677752 222222222333321 1225555555555555432 111 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEe Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRD 159 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 159 (456) ...-. ...+.+++.+.+.+|.||+.+-.+..|++ .+..++|..+.+..++. +++.. T Consensus 95 -n~~~t-------------~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~---------~~~~~ 151 (351) T protein:vir:78 95 -HRWLS-------------RHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFS---------GFVYV 151 (351) T ss_pred -CCCCC-------------HHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCcceEEeeeCC---------eEEEE Confidence 00000 01123456678889999999999988876 47777887776654332 11111 Q ss_pred cCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 160 LDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINR 239 (456) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~ 239 (456) ..... ...|.++.+.++... -| ...-.|.|.+...+..++. T Consensus 152 ~~~~~--~~~~~~~eVihir~~-------------------------------~~---~~~~yGl~~~~~a~~si~l--- 192 (351) T protein:vir:78 152 NGWQE--RHEFAPDSVFQLVRP-------------------------------DI---NQEVYGLPEYLSSLHSAWL--- 192 (351) T ss_pred ecCCe--EEEEccccEEEEcCC-------------------------------CC---CCCcccccHHHHHHHHHHH--- Confidence 11111 112333333332100 00 0001255555443332222 Q ss_pred HHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhhhhccceeecCC-----Ccceeeccccc-hHHH Q lcl|Aclame:pro 240 AELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFEAAPGALWELPP-----GVDIWESQAND-FTPM 308 (456) Q Consensus 240 ~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~ 308 (456) ..+-..-...+|.+ |-.++ +|....+...+.-.+.+..... ....+.++...+ +.++..+.... -..| T Consensus 193 ~~~a~~~~~~~f~NGa~pggIl~~~~~~ls~e~~~~lr~~~~~~~G-~~N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf 271 (351) T protein:vir:78 193 NESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKG-PGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEF 271 (351) T ss_pred HHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcC-cccccceeeecCCCCccceeEEEcCCChhHHHH Confidence 11111111233322 22222 2222221111111111111110 111123333322 33444443322 1248 Q ss_pred HHHHHHHHHHHHhhcCCChhhhccccccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 309 LSAIKEHIRQLSSATKTPLPMLMPDSANQ------SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDT 382 (456) Q Consensus 309 ~~~~~~~~~~i~~~t~~p~~~~~~~~~n~------Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~ 382 (456) ++..+....+|++.-++|+..+|....|. ...+..+....+.=. ++.|.. +.. ..|.. T Consensus 272 ~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~----~~~iee----~n~----~l~~~---- 335 (351) T protein:vir:78 272 FNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPL----QARFAE----LND----WLGDE---- 335 (351) T ss_pred HHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHH----HHHHHH----HHh----hcCcc---- Confidence 88888888999999999999987432222 222222222222222 222221 111 11211 Q ss_pred ceEEecCCCCCCHHHHH Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKY 399 (456) Q Consensus 383 i~v~f~~~~~~~~~e~a 399 (456) -+.|++.....-.+.| T Consensus 336 -~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 336 -VVRFDDYEIPPAPVAA 351 (351) T ss_pred -ceecChhhhccccccC Confidence 1455544311111111 No 271 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=92.27 E-value=0.012 Score=31.09 Aligned_cols=292 Identities=13% Similarity=0.080 Sum_probs=107.6 Q ss_pred CCC-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhh Q lcl|Aclame:pro 1 MTA-------------------------STPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA 55 (456) Q Consensus 1 ~~~-------------------------~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~ 55 (456) |+- .+|+-.+. ...-++.++-++.|+. +.|.-....+.+..+ + T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~--------~~~~~~~~~~~~~~~~---~~pp~~~~~la~~~~-a 68 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLD--------RRDILDYVECISNGRW---YEPPVSFTGLAKSLR-A 68 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEecC--------cchhhhhhhhhhcCce---ecCCCCHHHHHHHHh-h Confidence 331 11111010 0001223333444432 122222222222211 0 Q ss_pred cCChHHHHHHHHHHhhh----cCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EE Q lcl|Aclame:pro 56 RTNWGLMVRDSVADRII----PNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TI 130 (456) Q Consensus 56 ~~n~~~~iVd~~~~~l~----g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i 130 (456) ..++.-++......+. .+|.. . . ..+..++.+.+.+|.||+.+-.+..|++ .+ T Consensus 69 -~~~h~~~i~~k~n~l~~~~~Pn~~l-------t----------~----~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L 126 (344) T protein:vir:20 69 -AVHHSSPIYVKRNILASTFIPHPWL-------S----------Q----QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRL 126 (344) T ss_pred -hhhhCccceehhhhHHHhccCCCCC-------C----------H----HHHHHHHHHHHhcCCeEEEEEECCCCcEEEE Confidence 1122222222222222 22211 0 0 1123456677889999999988888876 46 Q ss_pred EEEccceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccC Q lcl|Aclame:pro 131 TADSPETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTG 210 (456) Q Consensus 131 ~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (456) ..++|..+.+..+.. ++|....+.. ...|.++.+.++.. T Consensus 127 ~pl~~~~vr~~~~~~---------~~~~~~~~~~--~~~~~~~eIiHir~------------------------------ 165 (344) T protein:vir:20 127 ETSPAKYTRRGVEED---------VYWWVPSFNE--PTAFAPGSVFHLLE------------------------------ 165 (344) T ss_pred EEcCCceeEeeecCC---------EEEEEccCCe--EEEEcCccEEEeCC------------------------------ Confidence 777766655433221 1111111110 11122222222210 Q ss_pred ceeEEEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhhh-- Q lcl|Aclame:pro 211 SPPPVVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFEA-- 283 (456) Q Consensus 211 ~~~pv~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~~-- 283 (456) ..|. ..-.|.|.+.. .++.+....+-..-...+|.+ |-.++ +|.... ++.-+.+. ..+.. T Consensus 166 -~~~~---~~~yGls~~~~---a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~----~e~~~~ik--~~~~~~~ 232 (344) T protein:vir:20 166 -PDIN---QELYGLPEYLS---ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQD----RNDIEMLR--ENMVKSK 232 (344) T ss_pred -CCCC---CCcccccHHHH---HHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCC----HHHHHHHH--HHHHHhc Confidence 0000 00125554433 333433332222222344433 22222 232222 11111211 11111 Q ss_pred --hccc-eeec-C----CCcceeeccccch-HHHHHHHHHHHHHHHhhcCCChhhhccccccc------hHHHHHHHHHH Q lcl|Aclame:pro 284 --APGA-LWEL-P----PGVDIWESQANDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ------SAEGAHNIEKG 348 (456) Q Consensus 284 --~~~~-~~~~-~----~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~------Sg~Al~~~~~~ 348 (456) +.++ ++.. + .+.++..+..... ..|++..+....+|++.-++|+..+|..-.|. ...+..+.... T Consensus 233 g~~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~ 312 (344) T protein:vir:20 233 GRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNE 312 (344) T ss_pred CCCCccceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHH Confidence 1112 2222 2 2344544433222 24888888888999999999999987432222 22222233222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHHH Q lcl|Aclame:pro 349 FLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLGE 397 (456) Q Consensus 349 l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~e 397 (456) |.=.+ ..|. ++ ....|... +.|+++.....-| T Consensus 313 l~P~~----~~~e----~i----n~~lg~~~-----i~F~~~~l~~~d~ 344 (344) T protein:vir:20 313 LIPLQ----DRIR----EI----NGWLGQEV-----IRFKNYSLDTDND 344 (344) T ss_pred HHHHH----HHHH----HH----HHhcCCcc-----cccCccccccCCC Confidence 22222 2221 11 11223211 3354443221111 No 272 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=92.18 E-value=0.012 Score=31.02 Aligned_cols=302 Identities=14% Similarity=0.041 Sum_probs=117.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) +|-.+|+-.+. ...-++.++-+|.|+. +.|.-....+.+..+ ...++.-++......+.+. ++.. T Consensus 56 f~fg~p~~v~~--------~~~~~~~~~~~~~~~~---~~pp~~~~~La~~~~--~~~~h~s~l~~k~n~l~~~-~~Pn- 120 (376) T protein:vir:10 56 FTFDDPTPVMN--------RAEILDYVECWSNGEW---FEPPVSFAGLAKSFR--ASTHHSSALFFKANVLAST-FRPH- 120 (376) T ss_pred EEcCCceeccC--------cchhhhhhhhhhcCce---ecCCCCHHHHHHHHh--hhHHhhhhHHHHhHHHHhc-cCCC- Confidence 22122221111 0001233344555532 111111222323221 1225555555555554332 1110 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEe Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRD 159 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 159 (456) ..-. ...+.+++.+.+.+|.||+.+-.+..|++ .+..++|..+.+..|.. +++.. T Consensus 121 -p~lT--------------~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~---------~~~~~ 176 (376) T protein:vir:10 121 -RWLS--------------RHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFN---------GFVYV 176 (376) T ss_pred -CCCC--------------HHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceEEEeeCC---------eEEEE Confidence 0000 01123456677889999999999999976 58888888887765542 11111 Q ss_pred cCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 160 LDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINR 239 (456) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~ 239 (456) ..+. ....|.++.+.++.... .. ..-.|.|.+...+ +.+.. T Consensus 177 ~~~~--~~~~~~~~eViHir~~~----------------------~~------------~~~yGls~~~~a~---~si~l 217 (376) T protein:vir:10 177 NGWQ--ERHEFEPDSVFQLVRPD----------------------IN------------QEVYGLPEYLSSL---HSAWL 217 (376) T ss_pred EcCC--eEEEEccccEEEecCCC----------------------CC------------CCcccccHHHHHH---HHHHH Confidence 1111 11223333333331000 00 0012555544433 33322 Q ss_pred HHHHHHHHHHHHhh---hHHh--hcCCCccccccccchhhhhhhhhhhhhccceeecCC-----Ccceeeccc--cchHH Q lcl|Aclame:pro 240 AELQLLSTMAIQAF---RQRA--LKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPP-----GVDIWESQA--NDFTP 307 (456) Q Consensus 240 ~~s~~~~~~~~~~~---~~~~--i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~ 307 (456) ..+-..-...+|.+ |-.+ ++|........+.-.+.+...... ...+.++...+ +.++..+.. .+ .. T Consensus 218 ~~aa~~f~~~~f~NGa~pggIl~~~d~~l~~e~~~~lr~~~~~~~G~-~N~~~~~vl~~~g~~~Gi~~~pls~~~~d-~q 295 (376) T protein:vir:10 218 NESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGP-GNFRNVFMYAPGGKKDGIQLIPVSEVAAK-DE 295 (376) T ss_pred HHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCc-cccCceeEecCCCCccceEEEEccCCHHH-HH Confidence 22211122234333 2222 223222211111101111111000 11123334322 334444432 33 34 Q ss_pred HHHHHHHHHHHHHhhcCCChhhhcccccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc Q lcl|Aclame:pro 308 MLSAIKEHIRQLSSATKTPLPMLMPDSAN------QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVED 381 (456) Q Consensus 308 ~~~~~~~~~~~i~~~t~~p~~~~~~~~~n------~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~ 381 (456) |++..+....+|++.-++|+..+|..-.| .......+....|.=.++ .|. ++.. ..+.. T Consensus 296 f~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~Pl~~----~ie----eln~----~L~~~--- 360 (376) T protein:vir:10 296 FFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQA----RFA----ELND----WLGEE--- 360 (376) T ss_pred HHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHH----HHH----HHHh----hcccc--- Confidence 88888888899999999999988743222 122222233233222222 222 1111 11211 Q ss_pred cceEEecCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 382 TVDVSFESPDRVTLGEKYSAASLA 405 (456) Q Consensus 382 ~i~v~f~~~~~~~~~e~ad~~~kl 405 (456) -+.|++.... .+| .|. T Consensus 361 --~~~F~~~~Ll----r~d--~ka 376 (376) T protein:vir:10 361 --VVRFDDYEIP----PAP--VAA 376 (376) T ss_pred --ccccChhHhh----ccc--ccC Confidence 1445543211 111 110 No 273 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=91.85 E-value=0.014 Score=30.76 Aligned_cols=420 Identities=12% Similarity=0.029 Sum_probs=153.6 Q ss_pred CC-CCCHHHHHHHHHHHHHH-H---HHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC- Q lcl|Aclame:pro 1 MT-ASTPAEWLPVLTKRIDD-G---MSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN- 74 (456) Q Consensus 1 ~~-~~t~~~~~~~l~~~~~~-~---~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~- 74 (456) |- +.+-..+.+ ..+.+.. + ..+.+.+.+|..- .+..... .+....++..+-....++.+++.|.+- T Consensus 3 ~~~~~e~~~l~~-r~~~Lk~~R~~~e~~w~e~~~~~lP-----~~~~~~~--~~~~~~~~~dstg~~a~~~LAa~l~~~l 74 (517) T protein:vir:10 3 MRFAGNKSKIPK-LYEQLVGKRSPFLSRAENYSRFTLP-----YLMADVN--DDLSSQNAWQDDGASATNFLSNKLSQVL 74 (517) T ss_pred ccccccHHHHHH-HHHHHHHhhhHHHHHHHHHHHHhcc-----ccccCCC--CCccccccccchHHHHHHHHHHHHHHhh Confidence 22 223333333 3333332 2 2244444555322 1110000 011122344556666777777766533 Q ss_pred -----C-cccCCCc--------ccc----HH-------HHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceE Q lcl|Aclame:pro 75 -----G-ITVGGSA--------DSD----LA-------LRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT 129 (456) Q Consensus 75 -----~-~~~~~~~--------d~~----~~-------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~ 129 (456) | |++...+ +.+ .. ..+...+..++|.....++.++...+|.|-++ .+ ++... T Consensus 75 tpp~~~WF~l~~~~~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly--~~-~~~~~ 151 (517) T protein:vir:10 75 FPAQRSFFRIDLTPEGIKQLDNEAMTQSTAQKLLSDVEKAAMLYGESLQFRPAVVEAFKHLIVTGNVMMY--HP-DKTSP 151 (517) T ss_pred cCCCCccccccCCHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEE--Ee-CCCCc Confidence 2 2332111 111 11 12344556678999999999999999998654 33 33345 Q ss_pred EEEEccceEEEEeeCCCCceeEEEEEEEEe------cCCce----eEEEEEeCCeEEEEEEcccccccccce-eeccCCC Q lcl|Aclame:pro 130 ITADSPETMVVSVDPLQPWRIRAAMRWWRD------LDAES----DFAIVWSGDGWQKFARPCFVQSSSRRR-LVTRISD 198 (456) Q Consensus 130 i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 198 (456) ++.++-.+..+.-| ..++....+.+.... ..+.. ....-+.++..+.+...... ..+.++ ......+ T Consensus 152 ~~~~pl~~y~v~~d-~~G~v~~ivrr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v~~-~~~~~~~~~~~~d~ 229 (517) T protein:vir:10 152 IQAVPLHHYCVRRD-NNGTVLDIVFLQEKALETFEPSIRMAIQASRKGKQYKDKDNVKLYTHAKR-TKDGKYLIRQSADD 229 (517) T ss_pred EEEEEcCeEEEeeC-CCcCeEEEEeeeeccHHHHHHHhhhhcchhhhhhccCCcCceEEEEEEEE-eCCCceEEEEEeCc Confidence 66666555444444 444433333332110 00100 00001111111111111000 011111 1111111 Q ss_pred cccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccch Q lcl|Aclame:pro 199 SWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENG 272 (456) Q Consensus 199 ~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g 272 (456) .. ........++-+|++.+ .+..|.|-.+..++-+..++...-...........|...+. .+| T Consensus 230 ~~-~~~~s~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~~~~~~~a~~~~~lv~----------~~~ 298 (517) T protein:vir:10 230 VP-VGKESTVTEDKSPFLILTWKRSYGEDYGRGMAEDHAGAFFVIQFLSEALARGMALMADVKYLVK----------PGS 298 (517) T ss_pred ee-eccccccccccCCeeeeeeeecCCCCcccchHHHhHHHHHHHHHHHHHHHHHHHHhccCCcccC----------ccc Confidence 11 11111111233343322 23568898888888888888765555555555444433321 111 Q ss_pred hhhhhhhhhhhhccceeecCC-Ccceeecc-ccchHHH---HHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHH Q lcl|Aclame:pro 273 NAIDYASIFEAAPGALWELPP-GVDIWESQ-ANDFTPM---LSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEK 347 (456) Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~---~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~ 347 (456) .. ........+.|.+....+ +....++. ..++... ++.++.-+...+....+ .-.++...++.-++... T Consensus 299 ~~-~~~~l~~~~~g~~~~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~~l----~~~~~~rvTAtEV~~r~- 372 (517) T protein:vir:10 299 YT-DINQFVEGGSGAVLHGVEGDIHIVQLGKYADYTPIQAVLNDYRQRIGRVFMMEAM----TRRDAERVTAYEIQRDA- 372 (517) T ss_pred cc-chhhccCCCccccccCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhh----hccCCccccHHHHHHHH- Confidence 00 001111222222222211 12222222 2233333 33344444333332211 11122334665554333 Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHhcCC-CccccceEEecCCC-CCCHHHHHHHHHHHHh-----cCCC- Q lcl|Aclame:pro 348 GFLFKCEDRLSIAKIGLEAI--------LVKALQIEGE-SVEDTVDVSFESPD-RVTLGEKYSAASLAKA-----AGES- 411 (456) Q Consensus 348 ~l~~k~~~~~~~f~~~l~~~--------~~l~~~~~g~-~~~~~i~v~f~~~~-~~~~~e~ad~~~kl~~-----~g~~- 411 (456) +.++..++..+.++ +...+.+.+. .....+++.+-.+. .-...+.++.+....+ +.++ T Consensus 373 ------~E~~~~LGpv~~rl~~Ell~Pli~r~~~~l~~~l~~~~v~~~~~s~la~l~r~~~~~~i~~~~~~i~~~a~~~~ 446 (517) T protein:vir:10 373 ------MLVEQSLGGVYSLFATTFQGPLARWFMNGISSILTSKNVSPTILTGIEALGRMAELDKLGTFNGYVSMTAQWPE 446 (517) T ss_pred ------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccceeeccHHHHHHHHHHHHHHHHHHHHHHhhcCCh Confidence 33444444443331 2222222221 11223444432221 1111112222222110 1111 Q ss_pred ------cHHH----HHHhCCCCc------cHHHHHHHHHHHHHH--------HHHhhcc--cccccCCCCC Q lcl|Aclame:pro 412 ------WASI----RRNILNYNA------DQIKQDDLDRAREQI--------TLFAGNP--VQRPQEDGSR 456 (456) Q Consensus 412 ------s~~t----~~~~~~~~~------~~~~~~e~~~~~e~~--------~~~~~~~--~~~~~~~Gs~ 456 (456) .-.. ....+|... ++++++.++++..+. ...+..+ .++...+|.+ T Consensus 447 ~~~~~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~~~~~~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~ 517 (517) T protein:vir:10 447 PLQQAIKWPDFTDWVQGQISANFPFFKTQDELNAEAQAQQEQEATKYAAEQAGKAIPDMVKNGQINPQGGQ 517 (517) T ss_pred HHHhcCCHHHHHHHHHHHhCCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC Confidence 1111 123455432 344333332222211 1112222 2233466777 No 274 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=91.04 E-value=0.018 Score=30.18 Aligned_cols=303 Identities=13% Similarity=0.043 Sum_probs=116.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCC Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~ 80 (456) +|-.+|+-.+. ...-++.++-+|.|+. +.|.-....+.+..+ ...++.-++..+...+.+. ++.. T Consensus 31 ~~~~~p~~v~~--------~~~~~~~~~~~~~~~~---~~pp~~~~~la~~~~--~~~~h~~~l~~k~n~l~~~-~~Pn- 95 (351) T protein:vir:79 31 FTFDDPTPVMN--------RAEILDYVECWSNGEW---FEPPVSFAGLAKSFR--ASTHHSSALFFKANVLAST-FRPH- 95 (351) T ss_pred EEcCCceeecC--------cchhhhhhhhhhcCce---ecCCCCHHHHHHHHh--hhHhhhhhhhhhhhHHhhc-ccCC- Confidence 11112221110 0112344566677752 222222222333321 1225555555555555432 1110 Q ss_pred CccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEe Q lcl|Aclame:pro 81 SADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRD 159 (456) Q Consensus 81 ~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 159 (456) + .-. . ..+..++.+.+.+|.||+.+-.+..|++ .+..++|..+.+..+.. +++.. T Consensus 96 p-~~t-~-------------~~f~~~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~---------~~~~~ 151 (351) T protein:vir:79 96 R-WLS-R-------------HAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFS---------GFVYV 151 (351) T ss_pred C-CCC-H-------------HHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceeeeecCC---------eEEEE Confidence 0 000 0 1123456677889999999999988875 47788887766544322 11111 Q ss_pred cCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 160 LDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINR 239 (456) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~ 239 (456) ..+ .. ...|.++.+.++.... |. ..-.|.|.+... ++.+.. T Consensus 152 ~~~-g~-~~~~~~~eIihir~~~-------------------------------~~---~~~yGl~~~~~a---~~si~l 192 (351) T protein:vir:79 152 NGW-QE-RHEFEPDSVFQLVRPD-------------------------------IN---QEVYGLPEYLSS---LHSAWL 192 (351) T ss_pred ecC-ce-EEEEcCccEEEeCCCC-------------------------------CC---CCcccccHHHHH---HHHHHH Confidence 111 11 1123333333321000 00 001255544332 222222 Q ss_pred HHHHHHHHHHHHhh---hHHh--hcCCCccccccccchhhhhhhhhhhhhccceeecC-----CCcceeeccccc-hHHH Q lcl|Aclame:pro 240 AELQLLSTMAIQAF---RQRA--LKSTEHGLPNVDENGNAIDYASIFEAAPGALWELP-----PGVDIWESQAND-FTPM 308 (456) Q Consensus 240 ~~s~~~~~~~~~~~---~~~~--i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~ 308 (456) ..+-..-...+|.+ |--+ ++|........+.-.+.+...... ...+.++... .+.++..+.... -..| T Consensus 193 ~~~a~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~-~N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef 271 (351) T protein:vir:79 193 NESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGP-GNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEF 271 (351) T ss_pred HHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCc-cccCceeEecCCCCccceEEEEcCCChhHHHH Confidence 22111111233332 2222 223222211111111111111100 1112333332 233444433222 2248 Q ss_pred HHHHHHHHHHHHhhcCCChhhhccccccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 309 LSAIKEHIRQLSSATKTPLPMLMPDSANQ------SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDT 382 (456) Q Consensus 309 ~~~~~~~~~~i~~~t~~p~~~~~~~~~n~------Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~ 382 (456) ++..+....+|++.-++|+..+|..-.|. ...+..+....|.=.++ .+. ++. ...|.. T Consensus 272 ~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~Pl~~----~ie----~ln----~~lg~~---- 335 (351) T protein:vir:79 272 FNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQA----RFA----ELN----DWLGDE---- 335 (351) T ss_pred HHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHH----HHH----HHH----hhcCcc---- Confidence 88888888999999999999987432222 22222222222222222 221 111 112321 Q ss_pred ceEEecCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 383 VDVSFESPDRVTLGEKYSAASLA 405 (456) Q Consensus 383 i~v~f~~~~~~~~~e~ad~~~kl 405 (456) -+.|++.... .+.+|. T Consensus 336 -~~~F~~~~ll------r~d~~a 351 (351) T protein:vir:79 336 -VVTFDDYEIP------PAPVAA 351 (351) T ss_pred -eeeeChhhhc------cccccC Confidence 1456654311 111111 No 275 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=90.66 E-value=0.02 Score=29.93 Aligned_cols=413 Identities=11% Similarity=-0.028 Sum_probs=154.3 Q ss_pred HHH-HHHHHHH--HHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC------C-cccC Q lcl|Aclame:pro 10 LPV-LTKRIDD--GMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN------G-ITVG 79 (456) Q Consensus 10 ~~~-l~~~~~~--~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~------~-~~~~ 79 (456) ++. +.+.|+. +.+-....+++++---+ .+.......-+....+...+-....++.+++.|.+- | |++. T Consensus 1 mk~~~~~~~~~lkR~~~e~~w~e~a~~tlP--~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~~WF~l~ 78 (510) T protein:vir:63 1 MKTTAAMLWEKLRDGSVEQRAIEFAKTTLP--YLMVDPMSGSRGVVEHDFQSAGALLVNNLAAKLARSLFPTGIPFFRSE 78 (510) T ss_pred ChhHHHHHHHHHhccchHHHHHHHHHhhcc--ccCCCCCCccccccCCCccchHHHHHHHHHHHHHhhhcCCCCcccccC Confidence 332 2222222 11111222333322211 111000000011112233455566677777766533 2 2332 Q ss_pred CCc--------ccc----HH-------HHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccceEEE Q lcl|Aclame:pro 80 GSA--------DSD----LA-------LRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVV 140 (456) Q Consensus 80 ~~~--------d~~----~~-------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~~~~ 140 (456) ..+ +.. .. ..+...+..++|.....++.++...+|.+-++ .++++. +++.++-.+ ++ T Consensus 79 ~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Li~~G~a~l~--~~~~~~-~~~~~pl~~-y~ 154 (510) T protein:vir:63 79 LTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLY--RDSDAA-TVVAWSLRS-YA 154 (510) T ss_pred CChHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEE--EcCCCc-EEEEEEcce-eE Confidence 111 111 11 12445667788999999999999999997444 556653 566665555 44 Q ss_pred EeeCCCCceeEEEEEEEEec-------C-----------CceeEEEEEeCCeEEEEEEcccccccccceeec-cCCCccc Q lcl|Aclame:pro 141 SVDPLQPWRIRAAMRWWRDL-------D-----------AESDFAIVWSGDGWQKFARPCFVQSSSRRRLVT-RISDSWV 201 (456) Q Consensus 141 i~d~~~~~~~~~~i~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 201 (456) +--+..++.. .+++.+.-. . +....+++| +.+..... ..-.++.+. ...+.. T Consensus 155 v~~d~~G~vd-~i~rr~~~t~~~l~e~~~~~~~~~~~~~~~~~~v~v~------~~V~~~~~-~~~~~~sv~~e~dg~~- 225 (510) T protein:vir:63 155 VRRDATGRWM-DIVLKQRYKSKDLDEEYKQDLMRAGRNLSGSGSVDLY------THVQRKKG-TAMEYAELYHEIDGVR- 225 (510) T ss_pred EeeCCCcCee-EEEeeeeccHHHHhHHhhhhhhccccccCCCcceEEE------EEEEeecC-CCceEEEEEEEecCce- Confidence 4433444333 333333210 0 011112222 22211100 000011111 111111 Q ss_pred ccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccchhhh Q lcl|Aclame:pro 202 PVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAI 275 (456) Q Consensus 202 ~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g~~~ 275 (456) ........+.-+|++.+ .+..|.|-.+..++-+..++...-...........|...+ +++|. . T Consensus 226 ~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~~~lv----------~p~g~-~ 294 (510) T protein:vir:63 226 VGKEGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEVLNLV----------DEAKG-A 294 (510) T ss_pred eccccccccccCceeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc----------Ccccc-c Confidence 11111222233343332 2356889888888888888877655555555444443222 11111 0 Q ss_pred hhhhhhhhhccceeecCCC-cceeecc-ccchHH---HHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 276 DYASIFEAAPGALWELPPG-VDIWESQ-ANDFTP---MLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFL 350 (456) Q Consensus 276 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~---~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~ 350 (456) ..........|.+....++ ....++. .+++.. .++.++.-++..+.... ...++.+.++.-++.....+. T Consensus 295 ~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~l-----~~~~~~rvTAtEV~~r~~E~~ 369 (510) T protein:vir:63 295 VVDDYQDAEMGDYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMYGA-----NQRDAERVTAEEVRITAEEAE 369 (510) T ss_pred chhhhccCCCceeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHHhhc-----ccCCCCCcCHHHHHHHHHHHH Confidence 1111222233333332222 2222322 233333 33344444444332211 112333457765555444333 Q ss_pred HHHHH----HH-HHHHHHHHHHHHHHHHhcCCCc--cccc---eEEecCCCCCCHHHHHHHHH----HHHhcCCCc---- Q lcl|Aclame:pro 351 FKCED----RL-SIAKIGLEAILVKALQIEGESV--EDTV---DVSFESPDRVTLGEKYSAAS----LAKAAGESW---- 412 (456) Q Consensus 351 ~k~~~----~~-~~f~~~l~~~~~l~~~~~g~~~--~~~i---~v~f~~~~~~~~~e~ad~~~----kl~~~g~~s---- 412 (456) +...- .+ ..+.+-+.+++.++.+ .|... ...+ .+++-.++.+ ++.++.+. .+...|-+. T Consensus 370 ~~LGpv~~rl~~E~l~Pli~r~~~il~r-~gl~p~p~~~~~~~~v~~is~Lar--aq~~~~l~~~~q~l~~~~~~aq~~~ 446 (510) T protein:vir:63 370 NTLGGTYSLLAENLQSPLAYVCLSEVDD-ALLQGLITKQHKPAIETGLPALSR--SAAVQSMLNASQVIAGLAPIAQLDP 446 (510) T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCchhcccceecchhHHHH--HHHHHHHHHHHHHHHHhcCchhhhc Confidence 33222 11 2233444455555433 33221 1112 2333333222 22222111 111112111 Q ss_pred ----H---HHHHHhCCCCc-------cHHHHHHHHHHHHH---HHHHhhcccccccCCCCC Q lcl|Aclame:pro 413 ----A---SIRRNILNYNA-------DQIKQDDLDRAREQ---ITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 413 ----~---~t~~~~~~~~~-------~~~~~~e~~~~~e~---~~~~~~~~~~~~~~~Gs~ 456 (456) . ......+|.++ ++++.+.+++.+++ ..+.+....+-.+.++|- T Consensus 447 ~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~qq~~~~~~~~~~~~~~a~~~~~~~ 507 (510) T protein:vir:63 447 RISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEQQRQQAAQAQAAQETLLEGASDMTNAL 507 (510) T ss_pred cCCHHHHHHHHHHHhCCChhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc Confidence 1 12234567643 33333322221111 111112222223334444 No 276 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=90.42 E-value=0.021 Score=29.79 Aligned_cols=413 Identities=11% Similarity=-0.028 Sum_probs=153.4 Q ss_pred HHHHHHHHHHHH------HHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC------C-c Q lcl|Aclame:pro 10 LPVLTKRIDDGM------SRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN------G-I 76 (456) Q Consensus 10 ~~~l~~~~~~~~------~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~------~-~ 76 (456) ++.++++.-++. .+.+.+.+|..- .+.......-+....+...+-....++.+++.|.+- | | T Consensus 1 mk~~~~~~~~~lkr~~~e~~w~e~a~~tlP-----~~~~~~~~~~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~~WF 75 (510) T protein:vir:78 1 MKSTAAMLWEKLRDGSVEQRAIEFAKTTLP-----YLMVDPMSGSRGVVEHDFQSAGALLVNNLAAKLARSLFPTGIPFF 75 (510) T ss_pred ChhHHHHHHHHHhccchHHHHHHHHHhhcc-----ccccCCCCcccccccCcccchHHHHHHHHHHHHHHhhcCCCCccc Confidence 333333211111 122333334322 111000000001111233445566677777666533 2 2 Q ss_pred ccCCCc--------ccc----HH-------HHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEccce Q lcl|Aclame:pro 77 TVGGSA--------DSD----LA-------LRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPET 137 (456) Q Consensus 77 ~~~~~~--------d~~----~~-------~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~p~~ 137 (456) ++...+ +.. .. ..+...+..++|.....++.++...+|.+-+++ ++++. +++.++-.+ T Consensus 76 ~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~--~~~~~-~~~~~pl~~ 152 (510) T protein:vir:78 76 RSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLYR--NSDEA-TVVAWSLRS 152 (510) T ss_pred ccCCChHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEE--eCCCC-eEEEEEcce Confidence 332111 011 11 123445666788999999999999999986544 44443 466665555 Q ss_pred EEEEeeCCCCceeEEEEEEEEec-------C-----------CceeEEEEEeCCeEEEEEEcccccccccceee-ccCCC Q lcl|Aclame:pro 138 MVVSVDPLQPWRIRAAMRWWRDL-------D-----------AESDFAIVWSGDGWQKFARPCFVQSSSRRRLV-TRISD 198 (456) Q Consensus 138 ~~~i~d~~~~~~~~~~i~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 198 (456) +++.-+..++ +...+|.++-. . .....+.+| +.+...... .-.++.+ ....+ T Consensus 153 -y~v~~d~~G~-vd~i~rr~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~------~~V~~~~~~-~~~~~sv~~e~dg 223 (510) T protein:vir:78 153 -YAVRRDATGR-WMDIVLKQRYKSKDLDDVYKQDLMRAGRNLSGSGSVDLY------THVQRRKGT-AMDYAEMYHEIDG 223 (510) T ss_pred -eEEeeCCCcC-eeEEEeeeeccHHHHHHHhhHHhhhhhhccCCCceEEEE------EEEEeecCC-CCcEEEEEEEecC Confidence 4444334443 33344433211 0 011222222 222111000 0001111 01111 Q ss_pred cccccccccccCceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccccch Q lcl|Aclame:pro 199 SWVPVGDAVVTGSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENG 272 (456) Q Consensus 199 ~~~~~~~~~~~~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d~~g 272 (456) ... .......+.-+|++.+ .+..|.|-.+..++-+..++...-...........+...+ +++| T Consensus 224 ~~i-~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~~~lv----------~p~g 292 (510) T protein:vir:78 224 VRV-GETGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEVLNLV----------DEAK 292 (510) T ss_pred eee-ccccccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc----------CCcc Confidence 111 1111111232333322 2356889888888888888876555555444444433221 1111 Q ss_pred hhhhhhhhhhhhccceeecCCC-cceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 273 NAIDYASIFEAAPGALWELPPG-VDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFL 350 (456) Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~~l~ 350 (456) . ...........|.+....++ ....++. .++...-...++.+...|...--+ .....++.+.++.-++.....+. T Consensus 293 ~-~~~~~l~~~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aF~~--~l~~~~~~rvTAtEV~~r~~E~~ 369 (510) T protein:vir:78 293 G-AVVDDYQDAEMGDYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFMY--GANQRDAERVTAEEVRITAEEAE 369 (510) T ss_pred c-cchhhhccCCCceeecCCcccccccccCcccchHHHHHHHHHHHHHHHHHHhh--ccccCCCCCcCHHHHHHHHHHHH Confidence 1 01111122222333222221 2222222 233333233333333333322111 00112333456765555444333 Q ss_pred HHHHH----HH-HHHHHHHHHHHHHHHHhcCCCc--c---ccceEEecCCCCCCHHHHHHHHH----HHHhcCCC----- Q lcl|Aclame:pro 351 FKCED----RL-SIAKIGLEAILVKALQIEGESV--E---DTVDVSFESPDRVTLGEKYSAAS----LAKAAGES----- 411 (456) Q Consensus 351 ~k~~~----~~-~~f~~~l~~~~~l~~~~~g~~~--~---~~i~v~f~~~~~~~~~e~ad~~~----kl~~~g~~----- 411 (456) +...- .+ ..+.+-+++++.++.+ .|... . ....+++-.++-+ ++.++.+. .+...+-+ T Consensus 370 ~~LGpv~~rl~~E~l~Pli~r~~~il~r-~gl~p~p~~~~~~~~v~~is~Lar--aq~~~~l~~~~q~l~~~~~~~q~~~ 446 (510) T protein:vir:78 370 NTLGGTYSLLAENLQSPLAYVCLSEVDD-ALLQGLITKQHKPAIETGLPALSR--SAAVQSMLNASQVIAGLAPIAQLDP 446 (510) T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCcccccceeeecccHHHH--HHHHHHHHHHHHHHHHhcChhhhhh Confidence 33222 11 2233444555555433 23211 1 1122444333222 22222111 11111211 Q ss_pred --cH----HHHHHhCCCCc-------cHHHHHHHHHHHHHHHH---HhhcccccccCCCCC Q lcl|Aclame:pro 412 --WA----SIRRNILNYNA-------DQIKQDDLDRAREQITL---FAGNPVQRPQEDGSR 456 (456) Q Consensus 412 --s~----~t~~~~~~~~~-------~~~~~~e~~~~~e~~~~---~~~~~~~~~~~~Gs~ 456 (456) .- ......+|.++ ++++++.+++.+.+..+ ......+..+-+|+. T Consensus 447 ~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~~q~~~~~~~~~a~~~~~~~~~~~~ 507 (510) T protein:vir:78 447 RISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEEQRRQAAQAQAAQETLLEGASDMTNAL 507 (510) T ss_pred cCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC Confidence 11 12234567643 34444433332222111 111223333444444 No 277 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=84.41 E-value=0.061 Score=27.26 Aligned_cols=314 Identities=11% Similarity=0.046 Sum_probs=104.4 Q ss_pred HHHHHHHHHHHHHHhhccCcc-----cc---cCcccch---hhhhh----hhhhcCChHHHHHHHHHHhhhcCCcccCC- Q lcl|Aclame:pro 17 IDDGMSRVRLLARYSNGDAPL-----PE---LTRNTSA---AWRSF----QREARTNWGLMVRDSVADRIIPNGITVGG- 80 (456) Q Consensus 17 ~~~~~~~~~~~~~YY~g~~~i-----~~---~~~~~~~---~~~~~----~~k~~~n~~~~iVd~~~~~l~g~~~~~~~- 80 (456) ...+++| .+.+-..+...- .. .....+. .++.. .+.-..+|...+- .+.....||.... T Consensus 1 m~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~---~~~~~~~pi~~~~l 75 (368) T protein:vir:79 1 MSRNKTR--RAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMR---MGQWYEPPMPWDGL 75 (368) T ss_pred CCccccc--cchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHh---ccchhccCcCHHHH Confidence 0001000 011111110000 00 0000000 00000 0000011111110 0111111221100 Q ss_pred -------Ccccc-H---HHHHHHHHHhcC-h-hHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCC Q lcl|Aclame:pro 81 -------SADSD-L---ALRARRIWRDNR-M-DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQ 146 (456) Q Consensus 81 -------~~d~~-~---~~~l~~~~~~n~-~-~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~ 146 (456) .-... . ...+.....-|. + ...+..++.+.+.+|.||+.+-.+..|++ .+..++|..+...-|.. T Consensus 76 a~~~~~~~~h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~- 154 (368) T protein:vir:79 76 ARSFRAAAHHSSAVYVKRNILVSTFIPHPLLSRATFERLVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRRGLDLN- 154 (368) T ss_pred HHHHhhccccchhhhhhcchhhhhcCCCcCCCHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccceeeccCC- Confidence 00000 0 000111112232 1 12346688899999999999999888876 46777777665432211 Q ss_pred CceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCch Q lcl|Aclame:pro 147 PWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGE 226 (456) Q Consensus 147 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~ 226 (456) . .++...++ . ...|.++.+.++... + | ...-.|.|. T Consensus 155 --~-----~~~~~~~~-~--~~~~~~~dIihir~~--------------------------~-----~---~~~~yGlsp 190 (368) T protein:vir:79 155 --T-----YFFVQNWQ-Q--PYTFAAGSVFHLQEP--------------------------D-----I---NQEVYGLPE 190 (368) T ss_pred --E-----EEEEecCC-e--EEEEccccEEEecCC--------------------------C-----C---CCCcccccH Confidence 0 01111111 0 111222222222100 0 0 000125665 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHh--hcCCCccccccccchhhhhhhhhhh-----hhccceeecC---- Q lcl|Aclame:pro 227 VEPHIDIINRINRAELQLLSTMAIQAF---RQRA--LKSTEHGLPNVDENGNAIDYASIFE-----AAPGALWELP---- 292 (456) Q Consensus 227 ~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~--i~G~~~~~~~~d~~g~~~~~~~~~~-----~~~~~~~~~~---- 292 (456) +...+..++.-+ +-..-...+|.+ |--+ +.|.... ++.-+.+.. .++ ...+.++... T Consensus 191 ~~~a~~si~l~~---aa~~~~~~~~~NGa~~~gil~~~~~~l~----~e~~~~lk~--~~~~~~G~~N~g~~~vl~~~g~ 261 (368) T protein:vir:79 191 YLSALNATWLNE---SATLFRRRYYKNGSHAGFILYMTDAAQK----QEDVDTLRE--AMKSAKGPGNFRNLFMYAPNGK 261 (368) T ss_pred HHHHHHHHHHHH---HHHHHHHHHHhccCCCceEEEeCCCCCC----HHHHHHHHH--HHHHhcCCcccCceeEecCCCC Confidence 544433332221 111112233332 2222 2232221 121112111 111 1223444442 Q ss_pred -CCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 293 -PGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ------SAEGAHNIEKGFLFKCEDRLSIAKIGL 364 (456) Q Consensus 293 -~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~------Sg~Al~~~~~~l~~k~~~~~~~f~~~l 364 (456) .+.++..+.... -..|++..+....+|++.-++|+..+|....|. ......+....+.=.+ +.|. T Consensus 262 ~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~----~~ie--- 334 (368) T protein:vir:79 262 KDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQ----DRLL--- 334 (368) T ss_pred ccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHH----HHHH--- Confidence 334554443322 134788888888999999999999887432222 1222222222222222 2221 Q ss_pred HHHHHHHHHhcCCCccccceEEecCCC--CCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 365 EAILVKALQIEGESVEDTVDVSFESPD--RVTLGEKYSAASLAKAA 408 (456) Q Consensus 365 ~~~~~l~~~~~g~~~~~~i~v~f~~~~--~~~~~e~ad~~~kl~~~ 408 (456) ++.. ..|.. .+.|.+.. ..+.+..|+... .++ T Consensus 335 -~ln~----~l~~e-----~~rF~~~~l~~~D~~a~a~~~~--rsa 368 (368) T protein:vir:79 335 -AIND----WIGDE-----VVRFAPYALGGHDQPAAAPGGQ--RSA 368 (368) T ss_pred -HHHh----ccCcc-----eeeechhHhhcccccccCCccc--ccC Confidence 1111 11211 23454322 111122222111 112 No 278 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=84.00 E-value=0.064 Score=27.13 Aligned_cols=298 Identities=11% Similarity=0.052 Sum_probs=107.0 Q ss_pred CCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 1 MTASTPAEWLPV--LTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 1 ~~~~t~~~~~~~--l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) .|-..|+-++.. |.+-.+ -+....+||+= ++. ...+.+..+. ..++.-++.....++..- +.. T Consensus 24 ~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~p--p~~------~~~la~l~~~--~~~h~~~i~~k~n~l~~l-~~~ 88 (346) T protein:vir:10 24 FSFGDPIPVLDRADILNYLE----CSAMYEKWYNP--PMS------FDGLAKSLRS--STHHESAIITKANILLST-CEV 88 (346) T ss_pred EecCCcceecCchhHHHHHH----HhhcCCceEec--CCC------HHHHHHHHHh--hhhcchhhhhhhhhHHHH-HhC Confidence 222223322221 111110 01111233332 111 1111111110 112222222222222110 000 Q ss_pred CCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEE Q lcl|Aclame:pro 79 GGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWW 157 (456) Q Consensus 79 ~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 157 (456) +.+-- . ...+.+++.+.+.+|.||+.+..+..|++ .+..++|..+.+..++.. .. . +. T Consensus 89 Pn~~~-----------t----~~~f~~~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~---~~-~--~~ 147 (346) T protein:vir:10 89 DSRYL-----------S----RRDLSSFVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQ---FY-Y--VP 147 (346) T ss_pred CCCCC-----------C----HHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCe---EE-E--EE Confidence 00000 0 01123456677889999999999988876 477888887766543321 10 0 00 Q ss_pred EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 158 RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRI 237 (456) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~ 237 (456) ...++. ...|.++.+.++.... | ...-.|.|.+...+. .+ T Consensus 148 ~~~~g~---~~~~~~~dIih~r~~~-------------------------------~---~~~~~G~~~~~~a~~---si 187 (346) T protein:vir:10 148 QRFDHQ---EHEFAKGSIYHLLEPD-------------------------------I---NQDIYGLPQYLSALQ---SA 187 (346) T ss_pred EccCCe---EEEEecccEEEecCCC-------------------------------C---CCCeeeccHHHHHHH---HH Confidence 111111 1122333333321100 0 000125555443332 22 Q ss_pred HHHHHHHHHHHHHHhh---hHHh--hcCCCccccccccchhhhhhhhhhh-----hhccceeecCCCc-----ceeeccc Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAF---RQRA--LKSTEHGLPNVDENGNAIDYASIFE-----AAPGALWELPPGV-----DIWESQA 302 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~---~~~~--i~G~~~~~~~~d~~g~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~ 302 (456) ....+-..-...+|.+ |--+ +++.... ++.-+.+.. .++ ...+.++...+++ ++..+.. T Consensus 188 ~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l~----~e~~~~i~~--~~~~~~g~~n~~~~~vl~~~~~~~gi~~~pis~ 261 (346) T protein:vir:10 188 WLNESATLFRRKYFLNGAHAGFVFYMSDASQK----QEDVENIRQ--QLKQSKGVGNFKNLFVHAPNGKKDGIQIIPIAD 261 (346) T ss_pred HHHHHHHHHHHHHHhccCCCceEEEeCCCCCC----HHHHHHHHH--HHHHhcCccccCceeEecCCCCccceeEEecCC Confidence 2221111111233332 2222 2222221 111112211 111 1123344444433 2332222 Q ss_pred cc-hHHHHHHHHHHHHHHHhhcCCChhhhcccccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 303 ND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSAN------QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE 375 (456) Q Consensus 303 ~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n------~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~ 375 (456) .. -..|++..+....+|++.-++|+..+|....| +...+..+....+.=.+ +.|.. +.. .. T Consensus 262 ~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~~----~~iee----~n~----~L 329 (346) T protein:vir:10 262 VSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQ----ERLKE----FNQ----WL 329 (346) T ss_pred ChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHH----HHHHH----HHh----hc Confidence 22 12377878888899999999999988743222 22223333322222222 22221 111 11 Q ss_pred CCCccccceEEecCCCCCCHHH Q lcl|Aclame:pro 376 GESVEDTVDVSFESPDRVTLGE 397 (456) Q Consensus 376 g~~~~~~i~v~f~~~~~~~~~e 397 (456) |.. -+.|++...-.-.| T Consensus 330 ~~e-----~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 330 GQE-----VIKFKPSKLLQRTQ 346 (346) T ss_pred ccc-----eeeechhhhcccCC Confidence 211 14565443222222 No 279 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=83.99 E-value=0.064 Score=27.13 Aligned_cols=295 Identities=13% Similarity=0.070 Sum_probs=109.1 Q ss_pred CC-------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhh Q lcl|Aclame:pro 1 MT-------------------------ASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREA 55 (456) Q Consensus 1 ~~-------------------------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~ 55 (456) |+ -..|+-.+. ...-++.+.-++.|+. +.|.-....+.+..+ + T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~--------~~~~~~~~~~~~~~~~---~~pp~~~~~la~~~~-a 68 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLD--------RRDILDYVECISNGRW---YEPPISFTGLAKSLR-A 68 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCceeecC--------CcchhHHHHhhhcCcc---ccCCCCHHHHHHHHH-h Confidence 22 111111100 0011233344455532 112111222222211 0 Q ss_pred cCChHHHHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEc Q lcl|Aclame:pro 56 RTNWGLMVRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADS 134 (456) Q Consensus 56 ~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~ 134 (456) ..++.-++......+.+. ++. ... + .. ..+..++.+.+.+|.||+.+-.+..|++ .+..++ T Consensus 69 -~~~h~~~i~~k~n~l~~~-~~P---n~~-----~----t~----~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~ 130 (344) T protein:vir:60 69 -AVHHSSPIYVKRNILAST-FIP---HPW-----L----SQ----QDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSP 130 (344) T ss_pred -hhhhccchhhhhhHHHhh-ccC---CCC-----C----CH----HHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcC Confidence 112223333333333221 110 000 0 00 1123456677889999999989988876 477777 Q ss_pred cceEEEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeE Q lcl|Aclame:pro 135 PETMVVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPP 214 (456) Q Consensus 135 p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 214 (456) |..+.+..+.. ++|....+.. ...|.++.+.++... .| T Consensus 131 ~~~vr~~~~~~---------~~~~v~~~~~--~~~~~~~eIiHir~~-------------------------------~~ 168 (344) T protein:vir:60 131 AKYTRRGVEED---------VYWWVPSFNE--PTAFAPGSVFHLLEP-------------------------------DI 168 (344) T ss_pred cceEEEeecCC---------eEEEEccCCe--EEEEcCccEEEEcCC-------------------------------CC Confidence 77665544321 1121111111 112222233222100 00 Q ss_pred EEEecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhhh----hc Q lcl|Aclame:pro 215 VVVYQNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFEA----AP 285 (456) Q Consensus 215 v~~~~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~~----~~ 285 (456) ...-.|.|.+.. .++++....+-..-...+|.+ |--++ +|..... +.-+.+. ..++. +. T Consensus 169 ---~~~~yGlsp~~~---a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls~----e~~~~ik--~~~~~~~g~~~ 236 (344) T protein:vir:60 169 ---NQELYGLPEYLS---ALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDR----NDIEMLR--ENMVKSKGRNN 236 (344) T ss_pred ---CCCcccccHHHH---HHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCH----HHHHHHH--HHHHHhcCCCC Confidence 000125554443 333333222222222334433 22222 2322221 1111211 11111 11 Q ss_pred cc-eeec-C----CCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccc------hHHHHHHHHHHHHHH Q lcl|Aclame:pro 286 GA-LWEL-P----PGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ------SAEGAHNIEKGFLFK 352 (456) Q Consensus 286 ~~-~~~~-~----~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~------Sg~Al~~~~~~l~~k 352 (456) ++ ++.. + ++.++..+.... -..|++..+....+|++.-++|+..+|....|. ...++.+....|.=. T Consensus 237 ~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl 316 (344) T protein:vir:60 237 FKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPL 316 (344) T ss_pred CcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHH Confidence 11 2222 2 233444433222 124888888888999999999999887432222 222222333332222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccccceEEecCCCC-CCHH Q lcl|Aclame:pro 353 CEDRLSIAKIGLEAILVKALQIEGESVEDTVDVSFESPDR-VTLG 396 (456) Q Consensus 353 ~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~-~~~~ 396 (456) ++ .|. ++ ....|... +.|.+... .+.+ T Consensus 317 ~~----~~e----~l----n~~lg~~~-----i~F~~~~l~~~d~ 344 (344) T protein:vir:60 317 QD----RIR----EI----NGWLGQEV-----IRFKNYSLDTDNG 344 (344) T ss_pred HH----HHH----HH----HHhcCCcc-----cccCccccCCCCC Confidence 22 121 11 11223211 33544332 1112 No 280 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=82.50 E-value=0.076 Score=26.71 Aligned_cols=296 Identities=11% Similarity=0.022 Sum_probs=105.5 Q ss_pred CC-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCcccccCcccchhhhhhhhhhcCCh Q lcl|Aclame:pro 1 MT-------------------ASTPAEWLPVLTKRIDDGMSRVRLLARYSN--GDAPLPELTRNTSAAWRSFQREARTNW 59 (456) Q Consensus 1 ~~-------------------~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~--g~~~i~~~~~~~~~~~~~~~~k~~~n~ 59 (456) |+ =..|+-++.. ..-.+.+.-+|. |+. +.|.-....+.+..+ ...+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------~~~~~~~~~~~~~~~~~---~~pP~~~~~La~l~~--~~~~ 67 (337) T protein:vir:78 1 MTKRQQQPAQAAASSPRPSVVFSMPEAIDPT--------AWMTDYTGVFYNPYGEY---YQPPIDRKGLAKVAR--ANAH 67 (337) T ss_pred CCCcccCcccccccCceeEEEecCcccccCc--------chhHhhhhhhhccCcce---ecCCCCHHHHHHHhh--cchh Confidence 22 1111111100 000111111222 211 111111112222211 1224 Q ss_pred HHHHHHHHHHhhhcCCcccCCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceE Q lcl|Aclame:pro 60 GLMVRDSVADRIIPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETM 138 (456) Q Consensus 60 ~~~iVd~~~~~l~g~~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~ 138 (456) +.-++......+.. .+... ...+..++.+.+.+|.||+.+-.+..|++ .+..++|..+ T Consensus 68 h~~~L~~k~N~~~~-~f~~~--------------------~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v 126 (337) T protein:vir:78 68 HGAILMARRNMVAG-RFTNQ--------------------RATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYL 126 (337) T ss_pred hhhHHHhhhccccc-cCcCc--------------------HHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCcee Confidence 44444444332211 11100 02344566778889999999999888876 4667776655 Q ss_pred EEEeeCCCCceeEEEEEEEEecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEe Q lcl|Aclame:pro 139 VVSVDPLQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY 218 (456) Q Consensus 139 ~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 218 (456) ...-|.. .+|...++. ...|.++.+.++... . | . T Consensus 127 ~~~~d~~---------~~~~~~~~~---~~~~~~~eIiHik~~--------------------------~-----~---~ 160 (337) T protein:vir:78 127 RRREDGC---------FVYLQQGKP---NLIYRPDDVIWLAQY--------------------------D-----P---E 160 (337) T ss_pred EeeeCCe---------EEEEEcCCc---eEEECCccEEEECCC--------------------------C-----C---C Confidence 4332210 011111111 112222222222100 0 0 0 Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhhh-----hccce Q lcl|Aclame:pro 219 QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFEA-----APGAL 288 (456) Q Consensus 219 ~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~~-----~~~~~ 288 (456) ..-.|.|.+.. .+.++....+-..-...+|.+ |--++ +|.... ++.-..+. ..++. ..+.+ T Consensus 161 ~~~~Gls~~~~---a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~----~e~~~~lk--~~~~~~~G~~n~~~~ 231 (337) T protein:vir:78 161 QQVYGMPDYLG---GLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMD----DDTEEEMK--EMIANSKGVGNFRSM 231 (337) T ss_pred CCcccccHHHH---HHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCC----HHHHHHHH--HHHHHhcCcccccce Confidence 00125554433 333333222222222234333 22222 222221 11111111 11111 12223 Q ss_pred eecC-----CCcceeeccccc-hHHHHHHHHHHHHHHHhhcCCChhhhccccccc-hH--HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 289 WELP-----PGVDIWESQAND-FTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ-SA--EGAHNIEKGFLFKCEDRLSI 359 (456) Q Consensus 289 ~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~-Sg--~Al~~~~~~l~~k~~~~~~~ 359 (456) +... .+.++..+.... -..|++..+....+|++.-++|+..+|....|. +| .+-+....=....+.=+++. T Consensus 232 ~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~~~ 311 (337) T protein:vir:78 232 FVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDATYARNEVLPLCEL 311 (337) T ss_pred EEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHHHHHHHHHHHHHHH Confidence 3332 233444443222 234788888888899999999999987432221 11 12222111111222222233 Q ss_pred HHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCH Q lcl|Aclame:pro 360 AKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTL 395 (456) Q Consensus 360 f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~ 395 (456) +...+.+. +.... ..+.|..+....+ T Consensus 312 ie~~~n~~--------ll~~~--~~~~f~~~~~~~~ 337 (337) T protein:vir:78 312 VQDAINSA--------GLPRA--LWVTFRETIGAAV 337 (337) T ss_pred HHHHHhhh--------cCChh--hceeccccccccC Confidence 33333211 11111 1233433322211 No 281 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=76.32 E-value=0.14 Score=25.32 Aligned_cols=302 Identities=11% Similarity=-0.039 Sum_probs=111.4 Q ss_pred CCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCccc Q lcl|Aclame:pro 1 MTASTPA--EWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITV 78 (456) Q Consensus 1 ~~~~t~~--~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~ 78 (456) +|-.+|. ++++ .+.-+|.+.-+. +.+.-....+.+..+ ...++.-++..+..++.+. +.. T Consensus 23 ~~~~~~~~~~~~~--------------y~~~~~~~~~~~-~epp~~~~~la~~~~--~~~~h~~~i~~k~n~l~~~-~~P 84 (345) T protein:vir:37 23 FSLSEITASPALD--------------YVGIGFDENYNC-YLPPVNRHALAKLPH--QNAQHGGILHSRANMVSAT-YEG 84 (345) T ss_pred eecCCcccchhhc--------------ccceeeecCCcc-ccCCCCHHHHHHHhh--cchhhcchhhhhhhHHhhc-cCC Confidence 2222221 1111 111111111000 111111111222211 1224555555555555432 111 Q ss_pred CCCccccHHHHHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEE Q lcl|Aclame:pro 79 GGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWW 157 (456) Q Consensus 79 ~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 157 (456) .+.-+ . ..+.+++.+.+.+|.||+.+-.+..|++ .+..++|..+....|.. ....++.+ T Consensus 85 -n~~~t--~-------------~~f~~~v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d~~----~~~~~~~~ 144 (345) T protein:vir:37 85 -GKALS--K-------------MEMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKDGG----YSYLMKKS 144 (345) T ss_pred -CCCCC--H-------------HHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeecCC----eeEEEeee Confidence 00000 0 1123456677889999999999988876 46777777665543321 11112221 Q ss_pred EecCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 158 RDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRI 237 (456) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~ 237 (456) ..... .. ...|.++.+.++.... | ...-.|.+.+... +.++ T Consensus 145 ~~~~~-g~-~~~~~~~eViHir~~~-------------------------------~---~~~~~Gl~~~~~a---~~si 185 (345) T protein:vir:37 145 LYDTA-QE-IYRYDAKDIIFIKLYD-------------------------------P---MQQVYGSPDYVGG---IQSA 185 (345) T ss_pred eeccC-ce-EEEEccccEEEEcCCC-------------------------------C---CCCcccchHHHHH---HHHH Confidence 11111 11 1122233333321000 0 0001244444332 2222 Q ss_pred HHHHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhhhhccceeecCC-----Ccceeeccccch-H Q lcl|Aclame:pro 238 NRAELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFEAAPGALWELPP-----GVDIWESQANDF-T 306 (456) Q Consensus 238 ~~~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~ 306 (456) ....+-..-...+|.+ |--++ ++....+...+.-.+.+....... ..+.++...+ +.++..+..... . T Consensus 186 ~l~~~a~~~~~~~f~NGa~~~~Il~~t~~~l~~e~~~~lk~~~~~~~g~~-n~~~~~i~~~~g~~~G~~~~pl~~~~~d~ 264 (345) T protein:vir:37 186 LLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKGVG-NFRSMFVNIAGGHPDGLKVIPIGDTGTKD 264 (345) T ss_pred HHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHhcCcc-ccCceeEecCCCCccceeEEEccCChhHH Confidence 2111111111233332 22222 222222111111111111111001 1112333322 334444433222 2 Q ss_pred HHHHHHHHHHHHHHhhcCCChhhhcccccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 307 PMLSAIKEHIRQLSSATKTPLPMLMPDSAN------QSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVE 380 (456) Q Consensus 307 ~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n------~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~ 380 (456) .|++..+....+|++.-++|+..+|..-.| ....+..+....|.= +++.|...+.++ ..+. T Consensus 265 qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t~~~s~~e~~~~~f~~~~l~P----~~~~ie~~ln~~----~e~~----- 331 (345) T protein:vir:37 265 EFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMP----LQEIIAETINQD----PEIK----- 331 (345) T ss_pred HHHHHHHHhHHHHHHHhCCCHHHhccccCCCCCcccHHHHHHHHHHHHHHH----HHHHHHHHhhhh----hccC----- Confidence 388888888899999999999988743222 222223233232322 333333333321 1111 Q ss_pred ccceEEecCCC-CC Q lcl|Aclame:pro 381 DTVDVSFESPD-RV 393 (456) Q Consensus 381 ~~i~v~f~~~~-~~ 393 (456) ....+.|++.. .+ T Consensus 332 ~~~~i~F~~~~l~k 345 (345) T protein:vir:37 332 NLLKIKFREQNFAK 345 (345) T ss_pred CcceEEECchhhcC Confidence 23456777543 22 No 282 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=62.19 E-value=0.34 Score=23.16 Aligned_cols=184 Identities=10% Similarity=0.053 Sum_probs=68.7 Q ss_pred EEEEEecCCceeE------------EEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCC Q lcl|Aclame:pro 154 MRWWRDLDAESDF------------AIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNP 221 (456) Q Consensus 154 i~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~ 221 (456) +|.-. ++...+ ...|.++.+.++. +..| ...- T Consensus 1 ~r~~~--dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r-------------------------------~~~~---~~~~ 44 (219) T protein:vir:98 1 MRVCK--DGNYKYLMKKSLYDTKSEIYEYNKNDVIFIK-------------------------------LYDP---MQQV 44 (219) T ss_pred Cceee--cCeEEEEEecceecCCceeEEeccccEEEec-------------------------------CCCC---CCCc Confidence 11111 111000 0112222222211 0000 0001 Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHhh--cCCCccccccccchhhhhhhhhhhhhc-----cceeec Q lcl|Aclame:pro 222 DGMGEVEPHIDIINRINRAELQLLSTMAIQAF---RQRAL--KSTEHGLPNVDENGNAIDYASIFEAAP-----GALWEL 291 (456) Q Consensus 222 ~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~---~~~~i--~G~~~~~~~~d~~g~~~~~~~~~~~~~-----~~~~~~ 291 (456) .|+|.+...+ .++....+-..-...+|.+ |--++ .|... .++.-..+. ..|+... +.+... T Consensus 45 ~Glspi~~a~---~~i~~~~aa~~~~~~~f~Ng~~p~gil~~~~~~l----~~e~~~~~~--~~~~~~~g~~n~~~~~l~ 115 (219) T protein:vir:98 45 YGSPDYVGGI---TSALLNSDATIFRRRYYSNGAHMGFILYSTDPDM----TEEMEDEIA--ERIRDSKGVGNFRSMFVN 115 (219) T ss_pred ceecHHHHHH---HHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC----CHHHHHHHH--HHHHHhcCcccccceeEe Confidence 2666544433 2332222222222234444 22222 12111 111111211 1122111 222332 Q ss_pred -----CCCcceeecc--ccchHHHHHHHHHHHHHHHhhcCCChhhhcccc------ccchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 292 -----PPGVDIWESQ--ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDS------ANQSAEGAHNIEKGFLFKCEDRLS 358 (456) Q Consensus 292 -----~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~------~n~Sg~Al~~~~~~l~~k~~~~~~ 358 (456) +.+.++..+. ..+. .|++..+....+|+..-++|++.+|... +|.....+.+....|.-.++..+. T Consensus 116 ~~gg~~~G~~~~~~~~~~~d~-qfle~rk~~~~eIa~~fgVPp~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~ 194 (219) T protein:vir:98 116 IAGGHPDGLKVIPIGDTGQKD-EFANIKNISAQDVLTSHRFPPGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAE 194 (219) T ss_pred cCCCCccceeEEEccCCHHHH-HHHHHHHhhHHHHHHHhCCCHHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHH Confidence 2244554443 2333 4888888888999999999999987421 122222333333333332222222 Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceEEecCCCCCCHH Q lcl|Aclame:pro 359 IAKIGLEAILVKALQIEGESVEDTVDVSFESPDRVTLG 396 (456) Q Consensus 359 ~f~~~l~~~~~l~~~~~g~~~~~~i~v~f~~~~~~~~~ 396 (456) +|.+- ......+++.|..+.+.+.- T Consensus 195 ----~ln~~---------~~~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 195 ----SINSD---------YEIKSALKVNFKQPEKRDKN 219 (219) T ss_pred ----Hhhhh---------hcCCCccEEeecCcccccCC Confidence 22110 01223456778777655543 No 283 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=49.62 E-value=0.63 Score=21.67 Aligned_cols=240 Identities=10% Similarity=-0.048 Sum_probs=89.2 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcCCcccCCCcccc Q lcl|Aclame:pro 7 AEWLPVLTKRIDD-GMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSADSD 85 (456) Q Consensus 7 ~~~~~~l~~~~~~-~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~~~~~~~~~d~~ 85 (456) +-|.....+.-.. ........-...-+..... ...+.. ..-+...-..-+|+..++-+..-|+.+....... T Consensus 1 MglF~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~-----~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~ 73 (251) T protein:vir:46 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPSFQGTK--LRQYKD-----IEAIRHSDIFTAVMMIASDLARMPIRVTVNGQIN 73 (251) T ss_pred CCccccccccccCCCccchhhhhhhhccccCcC--cceech-----hhhhccHHHHHHHHHHHHhHhhCceEEeeCcccc Confidence 1111110000000 0000000000000000000 000100 0112223445678888888888888764322222 Q ss_pred HHHHHHHHHHh--c---ChhHHHHHHHHHHhhCCeeEEEEEeCCCCce-EEEEEccceEEEEeeCCCCceeEEEEEEEEe Q lcl|Aclame:pro 86 LALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRAAMRWWRD 159 (456) Q Consensus 86 ~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 159 (456) ....+..++.. | .-..+...++.+.+.+|.||+++..+.+|++ .+.+++|..+.+..++. + .+... ++.. T Consensus 74 ~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~-g-~~~~~--~~~~ 149 (251) T protein:vir:46 74 YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDAR-G-RLYYF--HQRI 149 (251) T ss_pred ccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCC-C-cEEEE--EEEe Confidence 22234444432 3 2345667788899999999999999999976 58999999999887643 2 22111 1111 Q ss_pred cCCceeEEEEEeCCeEEEEEEcccccccccceeeccCCCcccccccccccCceeEEEEecCCCCCchHHHHHHHHHHHHH Q lcl|Aclame:pro 160 LDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIINRINR 239 (456) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~n~~~~s~~~~v~~liD~~~~ 239 (456) ..........|.++.+.++... + .+.-.|.|-++.....+..... T Consensus 150 ~~~~~g~~~~~~~~diiH~r~~--------------------------------~---~dg~~G~spi~~~~~~i~~~~~ 194 (251) T protein:vir:46 150 DSNGNNIERNVKFEDMLDIKFY--------------------------------S---LDGINGLSLLDTLSRTIESDNN 194 (251) T ss_pred ccCCcceeEEECCccEEEecCc--------------------------------C---CCCeeecCHHHHHHHHHHHHHH Confidence 1111111233444555444210 0 0001355655444333322221 Q ss_pred HHHHHHHHHHHHhh---hHHhhcCCCccccccccc-hhhhhhhhhhhhhccceeecCCCcceeeccccchH Q lcl|Aclame:pro 240 AELQLLSTMAIQAF---RQRALKSTEHGLPNVDEN-GNAIDYASIFEAAPGALWELPPGVDIWESQANDFT 306 (456) Q Consensus 240 ~~s~~~~~~~~~~~---~~~~i~G~~~~~~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (456) .. .....+|.+ |.-+++-.. ...+++ -+.+. ..|....+.. +..+++ ....-+ T Consensus 195 ~~---~~~~~~f~ng~~p~gil~~~~---~l~~~e~~~~~~--~~~~~~~~g~---~n~g~~---~~gm~~ 251 (251) T protein:vir:46 195 GK---DFLNNFLRNGTHAGGILKMKG---VLDNKKARDRAR--EEFPKVLVEL---NKLGKL---SYSMNQ 251 (251) T ss_pred HH---HHHHHHHHccCCCcEEEEeCC---CCCCHHHHHHHH--HHHHHHhcCc---cccccc---ccccCC Confidence 11 122223332 222222110 001111 11110 1111110000 000010 000000 No 284 >protein:vir:80211 Length: 514 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522882;genbank:gi:158345175;genbank:GeneID:5687474 Probab=39.50 E-value=1 Score=20.55 Aligned_cols=424 Identities=11% Similarity=-0.006 Sum_probs=152.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccCcccchhhhhhhhhhcCChHHHHHHHHHHhhhcC------ Q lcl|Aclame:pro 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPN------ 74 (456) Q Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~iVd~~~~~l~g~------ 74 (456) |-.--+.-+.+.=... ...+.+.+.+|.--.- ...+.......++.. +...+-....++.+++.|.+- T Consensus 1 m~~~~~~l~~k~~R~~---~e~~w~e~a~~~lP~~--~~~~~~~~~~~~~~~-~~~dstg~~a~~~LAa~l~~~ltpp~~ 74 (514) T protein:vir:80 1 MRQQASAMWAEYRDST---AIRKAEDFAKFTIASL--MVDPLDKTHQAEVVE-YDFQSAGAFLVNNLTAKLALTLFPPGR 74 (514) T ss_pred CccchHHHHHHhhcch---HHHHHHHHHHHhcccc--cCCCCCCcccccccc-cccchhHHHHHHHHHHHHHhhhcCCCC Confidence 4433333322221111 1233444455532210 000001111111111 112334455666666666533 Q ss_pred C-cccCCCc---------cc---cHHH-------HHHHHHHhcChhHHHHHHHHHHhhCCeeEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 75 G-ITVGGSA---------DS---DLAL-------RARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADS 134 (456) Q Consensus 75 ~-~~~~~~~---------d~---~~~~-------~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~~~~g~~~i~~~~ 134 (456) | |++..++ +. +... .+...+..++|.....++.++...+|.|-+++- ++ ...++.++ T Consensus 75 ~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~--~~-~~~~~~~p 151 (514) T protein:vir:80 75 PSFQIELDDTLQELAAANGIDQSELHSRTADLERRATRRLFVNASLSKLHRILKLLVVTGNALFYRE--PG-TGKMLVWT 151 (514) T ss_pred cccccccCchhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEEEe--cC-CCcEEEEE Confidence 2 2332211 00 0111 234445668899999999999999999876653 22 23466665 Q ss_pred cceEEEEeeCCCCceeEEEEEEEEec-----------------CCceeEEEEEeCCeEEEEEEccccccccccee-eccC Q lcl|Aclame:pro 135 PETMVVSVDPLQPWRIRAAMRWWRDL-----------------DAESDFAIVWSGDGWQKFARPCFVQSSSRRRL-VTRI 196 (456) Q Consensus 135 p~~~~~i~d~~~~~~~~~~i~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 196 (456) -.+ +++--+..++....+.+..-.. .+....+.+|+ .+..... ....++. .... T Consensus 152 l~~-y~v~~d~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~------~v~~~~~-~~~~~~sv~~e~ 223 (514) T protein:vir:80 152 MQS-YTVRRTSHGDPAVVVLRQQMPFRELTPEIQADAQAKQIAKRDSDKCDLYT------VIEWQPT-PNGKRCAVWHEL 223 (514) T ss_pred cCe-EEEeeCCCcCeEEEEeeeeecHHHhhhhhhhhhhhhhccCCCCCceEEEE------EEEeecC-CCCeEEEEEEec Confidence 555 4444344444443333332110 00111223332 1110000 0000011 1111 Q ss_pred CCccccccccccc-CceeEEEEe------cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCccccccc Q lcl|Aclame:pro 197 SDSWVPVGDAVVT-GSPPPVVVY------QNPDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVD 269 (456) Q Consensus 197 ~~~~~~~~~~~~~-~~~~pv~~~------~n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~d 269 (456) .+.. ......+ +.-+|++.+ .+..|.|-.+..++-+..++...-...........+...+ + T Consensus 224 ~g~~--i~~es~y~~~e~P~i~~Rw~~~~ge~YGrgp~~~al~D~k~L~~l~~~~l~~~~~a~~~~~~v----------~ 291 (514) T protein:vir:80 224 EGKR--VGPESSYPAHLCPYVPVAWNVPDGEHYGRGYVEEYSGDFARLSILSERLGLYEFEALSLLNLV----------D 291 (514) T ss_pred ccee--ecccCccccccCCeeeeeeEecCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee----------C Confidence 1111 1111111 122333222 2356889888888888888876655555555444433222 1 Q ss_pred cchhhhhhhhhhhhhccceeecCC-Ccceeecc-ccchHHHHHHHHHHHHHHHhhcCCChhhhccccccchHHHHHHHHH Q lcl|Aclame:pro 270 ENGNAIDYASIFEAAPGALWELPP-GVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEK 347 (456) Q Consensus 270 ~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~t~~p~~~~~~~~~n~Sg~Al~~~~~ 347 (456) ++|.. ........+.|.+....+ +....++. .+++......++.+...|....-+ .....+..+.++.-++.... T Consensus 292 ~~g~~-~~~~l~~~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aFml--~~~~rd~~rvTAtEV~~r~~ 368 (514) T protein:vir:80 292 EAKGG-AVDDYRDAETGDFVPGQVGSVASYERGDYNKIAQASASVESIVMRLNRAFMY--TGQVRDAERVTVEEIRTVAE 368 (514) T ss_pred ccccc-chhhhcccCCceeecCCCccceeeecCcccchHHHHHHHHHHHHHHHHHHhh--hccCCCCCCCCHHHHHHHHH Confidence 11110 011112222233322222 22233322 234443334444444444321100 00112334457776665554 Q ss_pred HHHHHHH----HHH-HHHHHHHHHHHHHHHHh-cCC-C--ccccceEEecCCC-CCCHHHHHHH-------HHHHHhcC- Q lcl|Aclame:pro 348 GFLFKCE----DRL-SIAKIGLEAILVKALQI-EGE-S--VEDTVDVSFESPD-RVTLGEKYSA-------ASLAKAAG- 409 (456) Q Consensus 348 ~l~~k~~----~~~-~~f~~~l~~~~~l~~~~-~g~-~--~~~~i~v~f~~~~-~~~~~e~ad~-------~~kl~~~g- 409 (456) .+..... +++ ..+.+-+.+.+.++.+. .|. + ...-+++.+.-+. .-...+.++. +..+.+.. T Consensus 369 E~~~~LGpv~~rl~~Ell~Pli~r~~~il~r~~~g~lP~~p~~l~~~~~vs~la~l~r~~~~~~l~~~~~~i~~l~~~~p 448 (514) T protein:vir:80 369 EAENLLGGVYSLLAETLQAPLAYLTMYEASRGNGGMLLGIAQGVYRPSIITGIPALTRNIETANILRATQEASAIVPALV 448 (514) T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhcceeeecHHHHHHHHHHHHHHHHHHHHHHHhccch Confidence 4444322 222 22333345555555432 232 1 1222444443221 1111222222 21111110 Q ss_pred ----CCcHHH----HHHhCCCCc------cHHHHHHHHHHHH-HHHHHhhcccccccCCCCC Q lcl|Aclame:pro 410 ----ESWASI----RRNILNYNA------DQIKQDDLDRARE-QITLFAGNPVQRPQEDGSR 456 (456) Q Consensus 410 ----~~s~~t----~~~~~~~~~------~~~~~~e~~~~~e-~~~~~~~~~~~~~~~~Gs~ 456 (456) .+.-.. ....+|... +++..+.+++++. +.++++....+..++-|.. T Consensus 449 ~v~d~id~d~~~~~~a~~~Gvp~~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (514) T protein:vir:80 449 QLSKRFDPEKLVERIFANNSVDLSTLSKDPDVVAAEAEQEAALAQQQLDVASGALAAETSAG 510 (514) T ss_pred hhhhcCCHHHHHHHHHHHhCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc Confidence 011111 123355542 2222233333222 1111111111111111111 Done!