Query lcl|Aclame:protein:vir:97336|NCBI_annot:ORF006|genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Match_columns 492 No_of_seqs 170 out of 595 Neff 9.6 Searched_HMMs 1612 Date Mon Dec 2 02:49:28 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_65 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_65_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:94805 Length: 492 100.0 8E-127 5E-130 711.9 56.7 492 1-492 1-492 (492) 2 protein:vir:97336 Length: 492 100.0 4E-126 3E-129 708.0 56.9 492 1-492 1-492 (492) 3 protein:vir:1236 Length: 483 # 100.0 3E-119 2E-122 670.2 54.3 483 10-492 1-483 (483) 4 protein:vir:93747 Length: 472 100.0 8E-112 5E-115 629.5 54.3 472 21-492 1-472 (472) 5 protein:vir:95899 Length: 474 100.0 2E-108 1E-111 610.6 50.3 474 14-492 1-474 (474) 6 protein:vir:96266 Length: 474 100.0 2E-108 1E-111 610.6 50.3 474 14-492 1-474 (474) 7 protein:vir:94498 Length: 474 100.0 1E-106 6E-110 601.6 53.4 474 14-492 1-474 (474) 8 protein:vir:97447 Length: 474 100.0 1E-106 6E-110 601.6 53.4 474 14-492 1-474 (474) 9 protein:vir:95113 Length: 474 100.0 3E-106 2E-109 598.8 53.6 474 18-492 1-474 (474) 10 protein:vir:107112 Length: 478 100.0 4E-104 3E-107 587.4 53.5 471 15-492 1-478 (478) 11 protein:vir:105292 Length: 478 100.0 7E-103 4E-106 580.6 53.1 472 15-492 1-478 (478) 12 protein:vir:96839 Length: 474 100.0 3E-102 2E-105 577.5 52.7 469 17-488 1-474 (474) 13 protein:vir:97171 Length: 512 100.0 3E-101 2E-104 571.9 49.5 470 1-492 5-510 (512) 14 protein:vir:9306 Length: 511 # 100.0 9E-101 6E-104 569.0 51.6 470 1-492 8-510 (511) 15 protein:vir:96179 Length: 468 100.0 1E-100 8E-104 568.2 51.4 461 17-486 1-468 (468) 16 protein:vir:99781 Length: 511 100.0 1E-100 9E-104 568.0 50.5 470 1-492 8-509 (511) 17 protein:vir:103951 Length: 511 100.0 3E-100 2E-103 565.9 51.3 470 1-492 8-510 (511) 18 protein:vir:96240 Length: 511 100.0 7E-100 4E-103 564.1 51.9 470 1-492 8-506 (511) 19 protein:vir:78805 Length: 511 100.0 5E-100 3E-103 565.0 50.5 470 1-492 8-506 (511) 20 protein:vir:96366 Length: 511 100.0 5E-100 3E-103 565.0 50.5 470 1-492 8-506 (511) 21 protein:vir:102950 Length: 471 100.0 1.9E-99 1E-102 561.8 51.1 441 40-482 1-471 (471) 22 protein:vir:105461 Length: 470 100.0 3.7E-99 2E-102 560.2 51.0 444 40-490 1-470 (470) 23 protein:vir:5961 Length: 503 # 100.0 4.4E-98 3E-101 554.3 52.7 473 18-492 1-495 (503) 24 protein:vir:102330 Length: 451 100.0 1.6E-98 1E-101 556.7 49.4 427 44-478 1-451 (451) 25 protein:vir:2732 Length: 501 # 100.0 1.5E-97 9E-101 551.4 47.3 464 1-492 2-498 (501) 26 protein:vir:106571 Length: 499 100.0 1E-96 6E-100 546.9 48.9 452 28-492 1-487 (499) 27 protein:vir:3964 Length: 453 # 100.0 7.7E-97 5E-100 547.5 48.2 442 14-489 1-453 (453) 28 protein:vir:79043 Length: 479 100.0 1.8E-96 1.1E-99 545.5 49.9 459 18-483 1-479 (479) 29 protein:vir:4898 Length: 502 # 100.0 1.4E-96 9E-100 546.1 47.7 464 1-492 1-498 (502) 30 protein:vir:3609 Length: 452 # 100.0 2.2E-96 1.4E-99 545.0 48.7 442 22-489 1-452 (452) 31 protein:vir:96494 Length: 501 100.0 1.7E-96 1E-99 545.7 46.4 464 1-492 4-499 (501) 32 protein:vir:9871 Length: 429 # 100.0 4E-94 2.5E-97 532.6 50.1 420 44-485 1-429 (429) 33 protein:vir:733 Length: 453 # 100.0 2.3E-94 1.4E-97 534.0 46.8 437 14-484 1-453 (453) 34 protein:vir:99522 Length: 470 100.0 2E-93 1.3E-96 528.8 49.7 452 1-490 1-470 (470) 35 protein:vir:94546 Length: 506 100.0 7.5E-94 4.7E-97 531.1 47.1 454 1-492 1-503 (506) 36 protein:vir:94101 Length: 474 100.0 1.8E-93 1.1E-96 529.0 48.2 445 26-487 1-474 (474) 37 protein:vir:105889 Length: 474 100.0 1.8E-93 1.1E-96 529.0 48.2 445 26-487 1-474 (474) 38 protein:vir:78083 Length: 537 100.0 2.5E-93 1.5E-96 528.3 48.0 456 24-492 1-520 (537) 39 protein:vir:106639 Length: 481 100.0 1.5E-91 9.5E-95 518.5 48.7 456 1-490 6-481 (481) 40 protein:vir:95806 Length: 440 100.0 8.9E-92 5.5E-95 519.8 47.1 421 48-490 1-440 (440) 41 protein:vir:9922 Length: 489 # 100.0 2.9E-90 1.8E-93 511.4 45.8 446 24-491 1-489 (489) 42 protein:vir:4223 Length: 486 # 100.0 2.1E-80 1.3E-83 457.4 42.4 442 32-492 1-476 (486) 43 protein:vir:78537 Length: 480 100.0 2.5E-79 1.6E-82 451.5 46.5 436 42-492 1-468 (480) 44 protein:vir:78227 Length: 480 100.0 4.4E-79 2.7E-82 450.2 46.3 436 42-492 1-468 (480) 45 protein:vir:2427 Length: 485 # 100.0 2.4E-79 1.5E-82 451.6 42.5 441 32-492 1-483 (485) 46 protein:vir:2341 Length: 488 # 100.0 8E-78 4.9E-81 443.3 44.5 437 37-492 1-486 (488) 47 protein:vir:2500 Length: 501 # 100.0 2.5E-77 1.5E-80 440.6 45.1 452 28-492 1-498 (501) 48 protein:vir:102602 Length: 456 100.0 5.6E-77 3.5E-80 438.6 44.7 433 40-481 1-456 (456) 49 protein:vir:105819 Length: 456 100.0 5.6E-77 3.5E-80 438.6 44.7 433 40-481 1-456 (456) 50 protein:vir:104082 Length: 485 100.0 1.2E-76 7.5E-80 436.8 44.7 441 24-492 1-479 (485) 51 protein:vir:99072 Length: 479 100.0 4.8E-77 3E-80 439.0 42.4 441 32-492 1-470 (479) 52 protein:vir:7768 Length: 484 # 100.0 4.6E-77 2.8E-80 439.1 42.1 441 24-492 1-481 (484) 53 protein:vir:80680 Length: 441 100.0 2.9E-76 1.8E-79 434.7 45.2 421 41-486 1-441 (441) 54 protein:vir:7987 Length: 456 # 100.0 3.8E-75 2.4E-78 428.6 44.5 430 40-481 1-456 (456) 55 protein:vir:99916 Length: 504 100.0 6.6E-72 4.1E-75 410.8 40.3 446 24-492 1-492 (504) 56 protein:vir:98444 Length: 434 100.0 8E-69 5E-72 393.9 40.5 400 82-490 1-434 (434) 57 protein:vir:9751 Length: 422 # 100.0 4.2E-67 2.6E-70 384.5 37.4 395 44-465 1-422 (422) 58 protein:vir:94742 Length: 409 100.0 9.6E-66 5.9E-69 377.0 38.0 382 44-452 1-409 (409) 59 protein:vir:9568 Length: 410 # 100.0 5.2E-66 3.3E-69 378.5 36.3 383 53-468 1-410 (410) 60 protein:vir:8184 Length: 474 # 100.0 1.8E-65 1.1E-68 375.6 38.0 434 24-483 1-474 (474) 61 protein:vir:1634 Length: 409 # 100.0 2.9E-64 1.8E-67 368.9 36.5 382 44-452 1-409 (409) 62 protein:vir:38 Length: 496 # N 100.0 1.4E-61 8.7E-65 354.2 42.0 452 3-482 1-496 (496) 63 protein:vir:80959 Length: 499 100.0 1.9E-59 1.2E-62 342.5 46.2 452 2-482 1-499 (499) 64 protein:vir:79703 Length: 505 100.0 4E-51 2.5E-54 296.9 45.2 448 1-478 1-505 (505) 65 protein:vir:1587 Length: 508 # 100.0 3.7E-51 2.3E-54 297.1 43.5 454 1-489 1-508 (508) 66 protein:vir:9815 Length: 500 # 100.0 7.1E-48 4.4E-51 279.1 44.4 449 1-488 1-500 (500) 67 protein:vir:3028 Length: 500 # 100.0 7.1E-48 4.4E-51 279.1 44.4 449 1-488 1-500 (500) 68 protein:vir:4782 Length: 522 # 100.0 3.2E-47 2E-50 275.5 44.6 457 1-490 1-522 (522) 69 protein:vir:101494 Length: 527 100.0 2.7E-45 1.7E-48 264.9 34.9 456 17-492 1-524 (527) 70 protein:vir:102239 Length: 527 100.0 3.2E-45 2E-48 264.5 34.9 456 17-492 1-524 (527) 71 protein:vir:78907 Length: 518 100.0 1.1E-43 7.1E-47 256.0 41.4 435 43-482 1-518 (518) 72 protein:vir:98883 Length: 517 100.0 9.2E-41 5.7E-44 240.1 45.2 454 4-490 1-517 (517) 73 protein:vir:7430 Length: 563 # 100.0 3.9E-39 2.4E-42 231.1 34.4 452 17-492 1-542 (563) 74 protein:vir:94956 Length: 452 100.0 3E-30 1.9E-33 182.4 32.3 423 43-482 1-452 (452) 75 protein:vir:97265 Length: 513 100.0 1.9E-29 1.2E-32 178.0 36.0 441 37-492 1-501 (513) 76 protein:vir:95149 Length: 501 99.9 1.1E-26 7.1E-30 162.8 37.6 436 37-490 1-501 (501) 77 protein:vir:80453 Length: 535 99.9 1.2E-25 7.4E-29 157.2 36.3 469 1-491 1-535 (535) 78 protein:vir:78393 Length: 489 99.9 3.3E-24 2.1E-27 149.3 34.8 433 35-491 1-489 (489) 79 protein:vir:95014 Length: 491 99.9 3.7E-23 2.3E-26 143.6 32.8 433 32-485 1-491 (491) 80 protein:vir:96783 Length: 488 99.9 4.9E-23 3E-26 142.9 27.6 433 9-474 1-488 (488) 81 protein:vir:93630 Length: 776 99.8 1E-20 6.4E-24 130.1 28.4 465 15-492 1-674 (776) 82 protein:vir:108295 Length: 711 99.8 1.7E-18 1E-21 118.1 35.9 465 10-492 1-665 (711) 83 protein:vir:9950 Length: 714 # 99.8 1.1E-16 6.8E-20 108.1 37.2 440 15-492 1-617 (714) 84 protein:vir:817 Length: 714 # 99.8 1.1E-16 6.8E-20 108.1 37.2 440 15-492 1-617 (714) 85 protein:vir:2764 Length: 714 # 99.8 1.1E-16 6.8E-20 108.1 37.2 440 15-492 1-617 (714) 86 protein:vir:10117 Length: 714 99.8 1.1E-16 6.8E-20 108.1 37.2 440 15-492 1-617 (714) 87 protein:vir:3296 Length: 714 # 99.8 1.1E-16 6.8E-20 108.1 37.2 440 15-492 1-617 (714) 88 protein:vir:8846 Length: 705 # 99.7 2.4E-16 1.5E-19 106.2 33.1 439 24-492 1-629 (705) 89 protein:vir:105619 Length: 772 99.7 9.3E-17 5.8E-20 108.5 30.7 457 1-492 1-647 (772) 90 protein:vir:104437 Length: 714 99.7 5.7E-16 3.5E-19 104.2 32.5 447 15-492 1-620 (714) 91 protein:vir:80165 Length: 651 99.7 1.1E-14 7E-18 97.1 35.4 450 22-492 1-623 (651) 92 protein:vir:80040 Length: 461 99.7 4.6E-16 2.8E-19 104.7 27.6 411 29-492 1-460 (461) 93 protein:vir:100920 Length: 725 99.6 1.3E-14 7.8E-18 96.8 28.9 446 24-492 1-628 (725) 94 protein:vir:79538 Length: 502 99.6 4.2E-13 2.6E-16 88.4 36.5 421 29-492 1-501 (502) 95 protein:vir:77597 Length: 725 99.6 2.1E-14 1.3E-17 95.5 29.1 445 24-492 1-628 (725) 96 protein:vir:105429 Length: 708 99.6 4E-14 2.5E-17 94.0 30.3 450 37-492 1-640 (708) 97 protein:vir:5249 Length: 437 # 99.6 6.2E-14 3.9E-17 93.0 30.4 387 60-492 1-437 (437) 98 protein:vir:95449 Length: 584 99.6 3.6E-14 2.2E-17 94.3 28.2 431 24-476 1-584 (584) 99 protein:vir:6382 Length: 553 # 99.5 6.7E-13 4.1E-16 87.3 32.5 435 45-492 1-553 (553) 100 protein:vir:9263 Length: 725 # 99.5 3E-13 1.9E-16 89.2 30.5 446 24-492 1-628 (725) 101 protein:vir:105520 Length: 706 99.5 5.1E-12 3.2E-15 82.5 35.1 447 37-492 1-637 (706) 102 protein:vir:3520 Length: 720 # 99.5 4.9E-13 3E-16 88.1 29.4 443 41-492 1-638 (720) 103 protein:vir:389 Length: 530 # 99.5 4.5E-12 2.8E-15 82.8 34.1 433 1-492 1-525 (530) 104 protein:vir:96738 Length: 505 99.5 7.7E-12 4.8E-15 81.5 34.9 436 35-492 1-505 (505) 105 protein:vir:95542 Length: 548 99.4 1.7E-11 1.1E-14 79.6 35.2 431 29-492 1-514 (548) 106 protein:vir:3420 Length: 533 # 99.4 2.3E-11 1.4E-14 78.9 33.8 431 40-492 1-528 (533) 107 protein:vir:172 Length: 708 # 99.4 3.4E-11 2.1E-14 78.0 34.6 449 37-492 1-640 (708) 108 protein:vir:10321 Length: 495 99.4 2.9E-11 1.8E-14 78.3 32.1 428 32-492 1-495 (495) 109 protein:vir:107742 Length: 537 99.4 9.8E-12 6.1E-15 80.9 28.7 440 1-492 25-527 (537) 110 protein:vir:3139 Length: 599 # 99.4 9.9E-12 6.1E-15 80.9 28.4 442 24-481 1-599 (599) 111 protein:vir:94049 Length: 532 99.3 2E-11 1.3E-14 79.2 28.8 441 1-492 12-513 (532) 112 protein:vir:104338 Length: 422 99.3 3.7E-11 2.3E-14 77.8 29.9 382 60-492 1-422 (422) 113 protein:vir:79647 Length: 435 99.3 2.3E-12 1.4E-15 84.4 22.1 391 32-492 1-435 (435) 114 protein:vir:107662 Length: 427 99.2 8.7E-12 5.4E-15 81.2 22.2 381 53-492 1-426 (427) 115 protein:vir:99563 Length: 862 99.2 1.4E-10 8.8E-14 74.6 28.3 429 6-492 1-565 (862) 116 protein:vir:95821 Length: 763 99.2 2E-10 1.3E-13 73.7 26.9 455 14-492 1-661 (763) 117 protein:vir:96068 Length: 765 99.2 3.8E-10 2.3E-13 72.2 27.0 433 1-492 38-536 (765) 118 protein:vir:103765 Length: 549 99.1 2E-09 1.3E-12 68.2 34.4 440 37-491 1-549 (549) 119 protein:vir:107822 Length: 555 99.1 3.1E-09 1.9E-12 67.2 34.0 435 36-492 1-546 (555) 120 protein:vir:98506 Length: 555 99.1 3.1E-09 1.9E-12 67.2 34.0 435 36-492 1-546 (555) 121 protein:vir:107404 Length: 555 99.1 3.1E-09 1.9E-12 67.2 34.0 435 36-492 1-546 (555) 122 protein:vir:102668 Length: 547 99.0 5.5E-09 3.4E-12 65.9 36.9 432 40-492 1-547 (547) 123 protein:vir:7321 Length: 556 # 99.0 8.5E-09 5.3E-12 64.8 33.3 441 37-492 1-542 (556) 124 protein:vir:94599 Length: 641 98.9 1.2E-08 7.3E-12 64.1 29.9 461 18-492 1-609 (641) 125 protein:vir:95315 Length: 559 98.9 1.3E-08 8E-12 63.8 33.7 435 37-492 1-559 (559) 126 protein:vir:1538 Length: 535 # 98.9 1.5E-08 9.1E-12 63.5 36.3 443 24-492 1-533 (535) 127 protein:vir:3361 Length: 535 # 98.9 1.7E-08 1.1E-11 63.2 36.9 442 24-492 1-524 (535) 128 protein:vir:8883 Length: 543 # 98.9 2.2E-08 1.3E-11 62.6 33.3 444 32-492 1-542 (543) 129 protein:vir:2198 Length: 536 # 98.7 7.7E-08 4.8E-11 59.6 34.7 439 24-492 1-533 (536) 130 protein:vir:10447 Length: 536 98.7 9E-08 5.6E-11 59.2 34.1 439 24-492 1-533 (536) 131 protein:vir:107605 Length: 432 98.6 2.8E-07 1.7E-10 56.5 33.1 391 1-491 1-432 (432) 132 protein:vir:102855 Length: 432 98.6 2.8E-07 1.7E-10 56.5 33.1 391 1-491 1-432 (432) 133 protein:vir:105002 Length: 432 98.6 2.8E-07 1.7E-10 56.5 33.1 391 1-491 1-432 (432) 134 protein:vir:81095 Length: 416 98.5 3.2E-07 2E-10 56.2 30.7 383 43-492 1-416 (416) 135 protein:vir:4598 Length: 416 # 98.5 3.2E-07 2E-10 56.2 30.7 383 43-492 1-416 (416) 136 protein:vir:3843 Length: 397 # 98.5 3.5E-07 2.2E-10 56.0 28.7 375 29-492 1-397 (397) 137 protein:vir:3153 Length: 467 # 98.5 4.1E-07 2.5E-10 55.6 31.3 377 90-492 1-443 (467) 138 protein:vir:102080 Length: 429 98.5 4.7E-07 2.9E-10 55.3 30.5 389 29-491 1-429 (429) 139 protein:vir:63755 Length: 547 98.4 8.3E-07 5.1E-10 53.9 30.9 432 1-492 1-527 (547) 140 protein:vir:80644 Length: 551 98.4 8.3E-07 5.1E-10 53.9 30.5 434 4-492 1-531 (551) 141 protein:vir:99672 Length: 532 98.4 8.3E-07 5.2E-10 53.9 33.1 441 24-491 1-532 (532) 142 protein:vir:94572 Length: 535 98.4 8.5E-07 5.3E-10 53.9 32.7 441 24-492 1-523 (535) 143 protein:vir:105782 Length: 449 98.4 9.3E-07 5.8E-10 53.7 25.7 402 41-492 1-446 (449) 144 protein:vir:1266 Length: 416 # 98.4 9.3E-07 5.8E-10 53.6 29.3 375 43-492 1-415 (416) 145 protein:vir:94709 Length: 522 98.4 1E-06 6.3E-10 53.4 37.1 439 28-492 1-521 (522) 146 protein:vir:79984 Length: 441 98.4 1E-06 6.5E-10 53.4 32.2 373 67-492 1-441 (441) 147 protein:vir:9408 Length: 441 # 98.4 1E-06 6.5E-10 53.4 32.2 373 67-492 1-441 (441) 148 protein:vir:100039 Length: 522 98.3 2E-06 1.2E-09 51.8 36.4 423 43-490 1-522 (522) 149 protein:vir:1785 Length: 555 # 98.2 2.1E-06 1.3E-09 51.7 30.0 425 45-492 1-550 (555) 150 protein:vir:1380 Length: 422 # 98.2 2.3E-06 1.4E-09 51.5 31.0 385 29-492 1-422 (422) 151 protein:vir:80796 Length: 574 98.2 2.8E-06 1.7E-09 51.0 31.0 428 28-492 1-522 (574) 152 protein:vir:99853 Length: 488 98.2 3.2E-06 2E-09 50.7 30.9 379 40-492 1-410 (488) 153 protein:vir:103860 Length: 528 98.1 4E-06 2.5E-09 50.2 32.7 406 3-492 1-449 (528) 154 protein:vir:98396 Length: 441 98.1 4.1E-06 2.6E-09 50.1 32.0 377 67-492 1-441 (441) 155 protein:vir:99312 Length: 563 98.1 5.7E-06 3.5E-09 49.3 27.5 431 1-492 30-528 (563) 156 protein:vir:95599 Length: 563 98.1 5.7E-06 3.5E-09 49.3 27.5 431 1-492 30-528 (563) 157 protein:vir:78696 Length: 542 98.0 6.1E-06 3.8E-09 49.2 35.1 427 45-492 1-541 (542) 158 protein:vir:93610 Length: 454 98.0 6.6E-06 4.1E-09 49.0 33.2 384 49-492 1-438 (454) 159 protein:vir:99232 Length: 526 98.0 7.1E-06 4.4E-09 48.8 32.8 407 7-492 1-447 (526) 160 protein:vir:4952 Length: 386 # 98.0 8.4E-06 5.2E-09 48.4 28.9 365 29-491 1-386 (386) 161 protein:vir:6240 Length: 457 # 98.0 8.5E-06 5.3E-09 48.4 27.8 402 29-492 1-452 (457) 162 protein:vir:8418 Length: 409 # 98.0 9.2E-06 5.7E-09 48.2 30.6 375 29-492 1-409 (409) 163 protein:vir:4454 Length: 414 # 97.9 9.9E-06 6.1E-09 48.0 31.0 375 29-492 1-413 (414) 164 protein:vir:9359 Length: 348 # 97.9 1.1E-05 7.1E-09 47.7 27.6 313 114-492 1-345 (348) 165 protein:vir:1326 Length: 457 # 97.9 1.2E-05 7.6E-09 47.5 27.3 396 29-492 1-456 (457) 166 protein:vir:7017 Length: 515 # 97.9 1.2E-05 7.6E-09 47.5 36.5 423 31-487 1-515 (515) 167 protein:vir:79233 Length: 526 97.9 1.2E-05 7.7E-09 47.5 34.7 403 1-492 12-447 (526) 168 protein:vir:96579 Length: 576 97.8 1.5E-05 9.4E-09 47.0 27.3 426 1-492 54-530 (576) 169 protein:vir:1986 Length: 512 # 97.8 1.5E-05 9.6E-09 47.0 29.1 410 3-492 1-441 (512) 170 protein:vir:103330 Length: 517 97.8 2.1E-05 1.3E-08 46.2 34.6 424 32-492 1-517 (517) 171 protein:vir:4156 Length: 542 # 97.6 3.3E-05 2E-08 45.2 29.0 407 31-492 1-470 (542) 172 protein:vir:81152 Length: 411 97.6 3.5E-05 2.2E-08 45.0 30.0 368 29-489 1-411 (411) 173 protein:vir:100150 Length: 437 97.6 4.5E-05 2.8E-08 44.4 31.6 386 28-491 1-437 (437) 174 protein:vir:100882 Length: 383 97.5 4.8E-05 3E-08 44.3 29.7 360 29-490 1-383 (383) 175 protein:vir:6322 Length: 510 # 97.5 5E-05 3.1E-08 44.2 34.8 417 45-486 1-510 (510) 176 protein:vir:101648 Length: 518 97.5 5.3E-05 3.3E-08 44.0 32.0 384 43-492 1-435 (518) 177 protein:vir:107880 Length: 491 97.5 5.6E-05 3.5E-08 43.9 36.7 383 1-492 10-421 (491) 178 protein:vir:79063 Length: 491 97.5 6.1E-05 3.8E-08 43.7 30.4 395 10-492 1-421 (491) 179 protein:vir:7853 Length: 518 # 97.4 6.7E-05 4.2E-08 43.5 31.9 382 43-492 1-435 (518) 180 protein:vir:102727 Length: 945 97.4 6.9E-05 4.3E-08 43.4 32.9 442 4-492 1-535 (945) 181 protein:vir:483 Length: 413 # 97.4 8.1E-05 5E-08 43.0 30.2 373 47-492 1-410 (413) 182 protein:vir:2683 Length: 412 # 97.3 9.7E-05 6E-08 42.6 29.9 378 29-492 1-409 (412) 183 protein:vir:7407 Length: 392 # 97.3 9.8E-05 6.1E-08 42.6 30.2 365 48-484 1-392 (392) 184 protein:vir:100691 Length: 535 97.3 0.0001 6.2E-08 42.5 36.4 418 12-492 1-525 (535) 185 protein:vir:5737 Length: 419 # 97.3 0.0001 6.3E-08 42.5 29.9 373 43-492 1-416 (419) 186 protein:vir:1023 Length: 392 # 97.3 0.00011 7E-08 42.2 30.0 367 48-484 1-392 (392) 187 protein:vir:3989 Length: 392 # 97.3 0.00011 7E-08 42.2 30.0 367 48-484 1-392 (392) 188 protein:vir:93943 Length: 409 97.0 0.00022 1.4E-07 40.6 29.6 375 40-492 1-408 (409) 189 protein:vir:102118 Length: 409 97.0 0.00023 1.4E-07 40.6 32.3 372 47-490 1-409 (409) 190 protein:vir:77981 Length: 448 96.9 0.00024 1.5E-07 40.4 26.1 392 14-492 1-438 (448) 191 protein:vir:78942 Length: 510 96.9 0.00028 1.8E-07 40.0 34.3 415 45-486 1-510 (510) 192 protein:vir:4337 Length: 434 # 96.9 0.00029 1.8E-07 40.0 29.0 381 41-492 1-433 (434) 193 protein:vir:105064 Length: 421 96.9 0.00029 1.8E-07 40.0 30.1 373 43-492 1-416 (421) 194 protein:vir:4194 Length: 540 # 96.8 0.0003 1.9E-07 39.9 26.2 400 21-492 1-466 (540) 195 protein:vir:100187 Length: 385 96.8 0.0003 1.9E-07 39.9 31.6 360 43-492 1-384 (385) 196 protein:vir:96980 Length: 409 96.8 0.00032 2E-07 39.7 28.8 373 15-492 1-408 (409) 197 protein:vir:78161 Length: 355 96.8 0.00036 2.2E-07 39.5 24.8 292 157-492 1-333 (355) 198 protein:vir:96988 Length: 516 96.8 0.00036 2.2E-07 39.5 36.7 421 24-492 1-515 (516) 199 protein:vir:78641 Length: 278 96.7 0.00039 2.4E-07 39.3 24.5 250 114-419 1-278 (278) 200 protein:vir:81072 Length: 432 96.6 0.00045 2.8E-07 39.0 29.7 379 24-492 1-432 (432) 201 protein:vir:4854 Length: 386 # 96.6 0.00045 2.8E-07 39.0 31.4 361 43-492 1-386 (386) 202 protein:vir:4509 Length: 424 # 96.6 0.0005 3.1E-07 38.7 27.8 383 20-492 1-424 (424) 203 protein:vir:4828 Length: 382 # 96.5 0.00052 3.2E-07 38.6 31.6 354 43-492 1-382 (382) 204 protein:vir:189 Length: 424 # 96.5 0.00054 3.4E-07 38.5 30.1 378 39-489 1-424 (424) 205 protein:vir:10362 Length: 432 96.5 0.00055 3.4E-07 38.4 29.1 383 24-492 1-428 (432) 206 protein:vir:3868 Length: 417 # 96.4 0.00063 3.9E-07 38.1 30.9 365 67-492 1-415 (417) 207 protein:vir:108215 Length: 469 96.4 0.00065 4E-07 38.1 32.4 411 36-492 1-462 (469) 208 protein:vir:101541 Length: 694 96.4 0.0007 4.3E-07 37.9 23.7 444 1-492 24-553 (694) 209 protein:vir:1884 Length: 424 # 96.3 0.00074 4.6E-07 37.7 29.5 378 39-491 1-424 (424) 210 protein:vir:99452 Length: 651 96.3 0.00078 4.8E-07 37.6 19.9 430 24-492 1-541 (651) 211 protein:vir:94426 Length: 409 96.3 0.00078 4.8E-07 37.6 30.2 374 40-492 1-408 (409) 212 protein:vir:78589 Length: 695 96.1 0.00096 6E-07 37.1 22.6 421 1-492 52-554 (695) 213 protein:vir:101647 Length: 460 96.1 0.00099 6.1E-07 37.1 29.5 384 45-492 1-460 (460) 214 protein:vir:3648 Length: 695 # 96.1 0.001 6.2E-07 37.0 22.6 414 1-492 52-554 (695) 215 protein:vir:79772 Length: 648 96.1 0.001 6.3E-07 37.0 35.8 413 1-492 34-503 (648) 216 protein:vir:103219 Length: 201 95.9 0.00031 2E-07 39.8 10.2 179 290-492 1-201 (201) 217 protein:vir:79511 Length: 448 95.5 0.002 1.3E-06 35.3 29.8 393 10-492 1-437 (448) 218 protein:vir:106716 Length: 698 95.1 0.0027 1.7E-06 34.7 22.8 417 1-492 52-557 (698) 219 protein:vir:105641 Length: 516 95.0 0.003 1.9E-06 34.4 37.6 422 24-491 1-516 (516) 220 protein:vir:80333 Length: 419 94.9 0.0032 2E-06 34.2 31.8 373 47-492 1-413 (419) 221 protein:vir:95378 Length: 406 94.8 0.0035 2.2E-06 34.0 28.5 369 43-492 1-406 (406) 222 protein:vir:97060 Length: 432 94.6 0.004 2.5E-06 33.7 29.8 379 24-492 1-428 (432) 223 protein:vir:1431 Length: 419 # 94.5 0.0044 2.7E-06 33.5 32.2 369 47-492 1-415 (419) 224 protein:vir:104500 Length: 537 94.3 0.0047 2.9E-06 33.4 23.6 433 1-492 3-520 (537) 225 protein:vir:100249 Length: 431 94.2 0.005 3.1E-06 33.2 32.1 376 43-487 1-431 (431) 226 protein:vir:104259 Length: 403 94.2 0.0051 3.2E-06 33.1 28.8 371 43-489 1-403 (403) 227 protein:vir:4995 Length: 384 # 93.8 0.0065 4E-06 32.6 31.0 358 43-492 1-383 (384) 228 protein:vir:9702 Length: 406 # 93.1 0.0086 5.3E-06 31.9 28.1 367 29-486 1-406 (406) 229 protein:vir:8100 Length: 466 # 92.7 0.011 6.5E-06 31.4 30.5 404 29-492 1-465 (466) 230 protein:vir:1082 Length: 359 # 92.6 0.011 6.6E-06 31.4 29.8 338 46-448 1-359 (359) 231 protein:vir:80211 Length: 514 92.4 0.012 7.3E-06 31.2 33.4 419 45-486 1-514 (514) 232 protein:vir:960 Length: 413 # 92.3 0.012 7.5E-06 31.1 29.4 364 24-490 1-413 (413) 233 protein:vir:6210 Length: 394 # 92.0 0.013 8.3E-06 30.9 29.0 358 43-492 1-393 (394) 234 protein:vir:101289 Length: 395 91.5 0.016 9.7E-06 30.5 26.6 357 29-492 1-392 (395) 235 protein:vir:9507 Length: 395 # 91.5 0.016 9.7E-06 30.5 26.6 357 29-492 1-392 (395) 236 protein:vir:100650 Length: 395 91.5 0.016 9.7E-06 30.5 26.6 357 29-492 1-392 (395) 237 protein:vir:81218 Length: 423 88.8 0.03 1.9E-05 28.9 29.3 372 43-492 1-422 (423) 238 protein:vir:6896 Length: 523 # 88.6 0.031 1.9E-05 28.8 21.1 425 1-492 1-522 (523) 239 protein:vir:5839 Length: 533 # 88.3 0.033 2.1E-05 28.7 23.7 416 1-492 4-528 (533) 240 protein:vir:104892 Length: 558 88.2 0.034 2.1E-05 28.7 24.5 446 1-492 2-542 (558) 241 protein:vir:103177 Length: 533 85.0 0.056 3.5E-05 27.5 23.2 445 3-492 1-532 (533) 242 protein:vir:95965 Length: 385 83.8 0.065 4E-05 27.1 28.9 342 29-492 1-385 (385) 243 protein:vir:5665 Length: 511 # 83.4 0.069 4.3E-05 26.9 21.0 421 1-479 1-511 (511) 244 protein:vir:1661 Length: 378 # 83.2 0.07 4.4E-05 26.9 23.5 323 43-492 1-378 (378) 245 protein:vir:93867 Length: 378 78.1 0.12 7.3E-05 25.7 23.6 324 67-492 1-378 (378) 246 protein:vir:94002 Length: 378 73.3 0.17 0.00011 24.8 23.9 328 43-492 1-378 (378) 247 protein:vir:9641 Length: 395 # 72.3 0.18 0.00011 24.6 25.6 351 43-492 1-394 (395) 248 protein:vir:100598 Length: 516 69.8 0.22 0.00013 24.2 22.1 412 1-492 1-515 (516) 249 protein:vir:345 Length: 663 # 65.2 0.29 0.00018 23.5 32.8 432 15-492 1-601 (663) 250 protein:vir:7208 Length: 524 # 64.1 0.31 0.00019 23.4 20.5 427 1-492 1-523 (524) 251 protein:vir:103458 Length: 524 63.6 0.31 0.00019 23.3 20.5 427 1-492 1-523 (524) 252 protein:vir:98643 Length: 395 61.4 0.35 0.00022 23.1 25.2 356 43-492 1-394 (395) 253 protein:vir:4698 Length: 251 # 61.1 0.36 0.00022 23.0 20.3 235 43-331 1-251 (251) 254 protein:vir:101806 Length: 516 58.7 0.41 0.00025 22.7 21.2 415 1-485 1-516 (516) 255 protein:vir:101189 Length: 516 58.7 0.41 0.00025 22.7 21.2 415 1-485 1-516 (516) 256 protein:vir:4089 Length: 395 # 58.6 0.41 0.00025 22.7 26.7 358 43-489 1-395 (395) 257 protein:vir:8317 Length: 409 # 58.4 0.41 0.00026 22.7 29.0 356 29-484 1-409 (409) 258 protein:vir:6058 Length: 344 # 54.1 0.51 0.00032 22.2 20.1 293 63-423 1-344 (344) 259 protein:vir:106999 Length: 564 52.0 0.57 0.00035 21.9 22.1 444 3-492 1-542 (564) 260 protein:vir:858 Length: 378 # 51.8 0.57 0.00035 21.9 24.5 327 60-492 1-378 (378) 261 protein:vir:267 Length: 348 # 51.4 0.58 0.00036 21.9 24.0 298 71-426 1-348 (348) 262 protein:vir:80134 Length: 403 51.1 0.59 0.00037 21.8 30.0 360 43-492 1-403 (403) 263 protein:vir:94869 Length: 378 50.8 0.6 0.00037 21.8 23.5 328 43-492 1-378 (378) 264 protein:vir:98816 Length: 446 48.4 0.67 0.00042 21.5 30.4 391 18-455 1-446 (446) 265 protein:vir:95254 Length: 488 47.4 0.7 0.00044 21.4 31.4 416 24-492 1-480 (488) 266 protein:vir:78310 Length: 376 41.9 0.91 0.00056 20.8 27.6 342 43-490 1-376 (376) 267 protein:vir:98567 Length: 340 36.4 1.2 0.00073 20.2 19.6 283 71-422 1-340 (340) 268 protein:vir:78191 Length: 351 33.5 1.4 0.00084 19.9 23.0 282 65-426 1-351 (351) 269 protein:vir:98265 Length: 524 30.0 1.6 0.001 19.5 22.7 426 1-492 4-523 (524) 270 protein:vir:6596 Length: 521 # 29.6 1.6 0.001 19.4 23.1 413 1-492 8-520 (521) 271 protein:vir:1150 Length: 350 # 28.8 1.7 0.0011 19.3 23.2 295 63-422 1-350 (350) 272 protein:vir:94666 Length: 723 25.4 2.1 0.0013 18.9 35.6 366 76-492 1-445 (723) 273 protein:vir:108049 Length: 524 24.5 2.2 0.0013 18.7 22.5 426 1-492 1-523 (524) 274 protein:vir:106282 Length: 521 23.3 2.3 0.0014 18.6 25.4 419 1-492 1-520 (521) 275 protein:vir:81017 Length: 521 21.7 2.6 0.0016 18.3 22.9 424 1-492 2-520 (521) No 1 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=100.00 E-value=8e-127 Score=711.89 Aligned_cols=492 Identities=100% Similarity=1.444 Sum_probs=477.7 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) ||||||||||||+++||+|++|+|.||.++.++.+++.+.+.+.+.++|.++|.+|..+++|++++.+||+|+|+|++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~I~~~~ 80 (492) T protein:vir:94 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) T ss_pred ChHHHHHHHHHHHHhcCCceeecCccchhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEE Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLH 160 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~ 160 (492) ++.......+..++++|+++||+++||++.++|++|+|+++++++++..+.|+.|++|+++..+.++++++++||+||++ T Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~a~~~G~a~~~ 160 (492) T protein:vir:94 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLH 160 (492) T ss_pred ccccccccccccccccccccchHHHHHHHHHhhhcccCceeccCchHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEE Confidence 88888888888899999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccce Q lcl|Aclame:pro 161 PYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFS 240 (492) Q Consensus 161 v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (492) ||.|++|++++++++|++++|+||++..+++++++|+|..++...+++|++.++.+|+...+...........++++... T Consensus 161 v~~d~dg~~~~~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (492) T protein:vir:94 161 PYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFS 240 (492) T ss_pred EEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeecccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888999999 Q ss_pred eccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCC Q lcl|Aclame:pro 241 TGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNG 320 (492) Q Consensus 241 ~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492) +|+||.||||+|+||++|+|+|+++++|+|+||.++|++++.++++++|+++++|+++++..++...++..+++.+++++ T Consensus 241 ~~~~g~vPvv~~~nn~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492) T protein:vir:94 241 TGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNG 320 (492) T ss_pred ccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhHHHHhhccceecCCCC Confidence 99999999999999999999999999999999999999999999999999999999998888888888889999999999 Q ss_pred cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH 400 (492) Q Consensus 321 d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 400 (492) +++|++++.+.++++.++++|+++|+.+|++|+++++++++++||+||++++++|..||+++++.|+.+|++++++++++ T Consensus 321 ~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~ 400 (492) T protein:vir:94 321 GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH 400 (492) T ss_pred cceeEeccCCHHHHHHHHHHHHHHHHHHhCCcCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccCCcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCC Q lcl|Aclame:pro 401 FDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSA 480 (492) Q Consensus 401 ~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~ 480 (492) ++.+.++.+++|+|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.+++.+...+.+.+.+ T Consensus 401 ~~~~~~~~~i~v~f~~~~p~~~~e~~~~~~kl~giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~ 480 (492) T protein:vir:94 401 FDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADSA 480 (492) T ss_pred hcCCcccceeeEEecCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcCCCCCCCCCC Q lcl|Aclame:pro 481 QQQERSNNKESE 492 (492) Q Consensus 481 ~~~~~~~~~~~e 492 (492) .+++++++.++| T Consensus 481 ~~~~~~~~~e~e 492 (492) T protein:vir:94 481 QQQERSNNKESE 492 (492) T ss_pred ccccCCccccCC Confidence 999999999999 No 2 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=100.00 E-value=4.1e-126 Score=708.00 Aligned_cols=492 Identities=100% Similarity=1.446 Sum_probs=477.2 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) ||||||||||||+++||+|++|+++||.++.++.+++.+.+.+.+.++|.++|.+|..+++|++++.+||+|+|+|++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~ 80 (492) T protein:vir:97 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) T ss_pred ChHHHHHHHHHHHHhcCCceeeccchhhhhHhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEE Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLH 160 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~ 160 (492) ++.......+..++++|+++||+++||++.++||+|+|+++++++++..+.|+.|++|+++..+.++++++++||+||++ T Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~a~~~ 160 (492) T protein:vir:97 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLH 160 (492) T ss_pred ccccccccccccccccccccchHHHHHHHHhhhhcccCceeccCchHHHHHHHHHHhccHHHHHHHHHHHHhhcCeEEEE Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccce Q lcl|Aclame:pro 161 PYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFS 240 (492) Q Consensus 161 v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (492) +|.+++|++++++++|++++|+||++..+++.+++|+|..++...+++|++..+.+|....+..........+++..... T Consensus 161 v~~d~dg~~~~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (492) T protein:vir:97 161 PYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFS 240 (492) T ss_pred EEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeecccccccccccccc Confidence 99999999999999999999999998899999999999999999999999999999999999888888888888899999 Q ss_pred eccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCC Q lcl|Aclame:pro 241 TGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNG 320 (492) Q Consensus 241 ~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492) +|+||.||||+|+|+++|+|+|+++++|+|+||.++|++++.++++++|+++++|++.++.+++...++..+++.+++++ T Consensus 241 ~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (492) T protein:vir:97 241 TGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNG 320 (492) T ss_pred cCCCCCcceEEecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchhHHHHHhhccceecCCCC Confidence 99999999999999999999999999999999999999999999999999999999988888988889999999999999 Q ss_pred cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH 400 (492) Q Consensus 321 d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 400 (492) +++|++++.+.+++++++++|+++|+.+|++|+++++++++++||+||++++++|..||+.+++.|+.+|++++++++++ T Consensus 321 ~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~ 400 (492) T protein:vir:97 321 GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH 400 (492) T ss_pred cceeEeccCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccCCcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCC Q lcl|Aclame:pro 401 FDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSA 480 (492) Q Consensus 401 ~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~ 480 (492) ++.+.++.+++++|++++|+|.++.++++++++|++|+||+++++|+++|+++|++||++|+++..+..+...+++.+.+ T Consensus 401 ~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~G~iS~et~l~~l~~v~d~~~Eleri~~E~~~~~~~~~~~~~~~~~~~ 480 (492) T protein:vir:97 401 FDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSA 480 (492) T ss_pred hcCCcccceeeEEecCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhccccCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999888888889999999 Q ss_pred CcCCCCCCCCCC Q lcl|Aclame:pro 481 QQQERSNNKESE 492 (492) Q Consensus 481 ~~~~~~~~~~~e 492 (492) ++.+.++++++| T Consensus 481 ~~~~~~~~~~~e 492 (492) T protein:vir:97 481 QQQERSNNKESE 492 (492) T ss_pred cccccccccccC Confidence 999999999999 No 3 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=100.00 E-value=3.3e-119 Score=670.15 Aligned_cols=483 Identities=99% Similarity=1.444 Sum_probs=468.7 Q ss_pred HHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccc Q lcl|Aclame:pro 10 VAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAV 89 (492) Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~ 89 (492) +||+++||+|++|++.||.++.++.+++.+.+.+.+.++|.+++++|..++++|.++.+||+|+|+|++++++....... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~ 80 (483) T protein:vir:12 1 MAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAV 80 (483) T ss_pred CccchhcCCceeecCcchhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc Confidence 89999999999999999999999999999999999999999999999999999999999999999999999888888888 Q ss_pred cccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce Q lcl|Aclame:pro 90 DPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF 169 (492) Q Consensus 90 ~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~ 169 (492) +..++++|+++||+++||++.++||+|+|+++++++++..+.|+.|++|++++.+.++++++++||+||++||.|++|++ T Consensus 81 ~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~ 160 (483) T protein:vir:12 81 DPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF 160 (483) T ss_pred cccccccccccchHHHHHHHHhhhhcccCceeccCChHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEEEEEcCCCce Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccce Q lcl|Aclame:pro 170 KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF 249 (492) Q Consensus 170 ~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv 249 (492) ++++++|++++|+||++..+++++++|+|..++...+++|++..+.+|+.+.+..........+.+.....+|+||.||| T Consensus 161 ~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 240 (483) T protein:vir:12 161 KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF 240 (483) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEeecceEEEEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccce Confidence 99999999999999999999999999999999999999999999999999999888888888888999999999999999 Q ss_pred EeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceeeeccc Q lcl|Aclame:pro 250 IPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEV 329 (492) Q Consensus 250 v~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 329 (492) |+|+|+++|+|+|+++++|+|+||.++|++++.++++++|+++++|.+.++.+++...++..+++.++++|+++|++++. T Consensus 241 v~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (483) T protein:vir:12 241 IPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEV 320 (483) T ss_pred EEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhHHHhhhhccccccCCCCcceEEeecC Confidence 99999999999999999999999999999999999999999999999988888888888888999999999999999999 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccee Q lcl|Aclame:pro 330 PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKD 409 (492) Q Consensus 330 ~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~ 409 (492) +.++++.++++|+++|+.+|++|+++++++++|+||+||++++.++..||..+++.|+.+|++++++++++++.+.++.+ T Consensus 321 ~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~~~~~~ 400 (483) T protein:vir:12 321 PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKD 400 (483) T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 410 VDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 410 i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) ++|+|++++|+|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.++..+...+++.+...++++++++ T Consensus 401 i~v~f~~~~p~~~~~~a~~~~kl~GiiS~et~~~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 480 (483) T protein:vir:12 401 VDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNNK 480 (483) T ss_pred eeEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccccccCCcccCCCCCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) +.| T Consensus 481 e~e 483 (483) T protein:vir:12 481 ESE 483 (483) T ss_pred cCC Confidence 999 No 4 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=100.00 E-value=8.5e-112 Score=629.52 Aligned_cols=472 Identities=99% Similarity=1.447 Sum_probs=457.1 Q ss_pred eccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccc Q lcl|Aclame:pro 21 LYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMIT 100 (492) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~ 100 (492) +|+--+|.++.++.+++...+.+.+.++|.+++++|..++++++++.+||+|+|+|+.++.+.......+..++++|+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~ 80 (472) T protein:vir:93 1 MYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMIT 80 (472) T ss_pred CCCCCCcchhhhhceeeecCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhcccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999888888888888899999999 Q ss_pred chHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceE Q lcl|Aclame:pro 101 NFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGI 180 (492) Q Consensus 101 n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~ 180 (492) ||+++||++.++||+|+|+++++++++..+.|+.|++|+++..+.++++++++||+||++||.+++|++++++++|++++ T Consensus 81 n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~i~~~~p~~~~ 160 (472) T protein:vir:93 81 NFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGI 160 (472) T ss_pred chHHHHHHHHhhhhcccCeeeccCChHHHHHHHHHHhccHHHHHHHHHHHHhhcCeEEEEEEECCCCceEEEEEcccceE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCC Q lcl|Aclame:pro 181 PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEIS 260 (492) Q Consensus 181 ~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s 260 (492) |+||++..+++.+++|+|..++...+++|++..+.+|+...+..........+.+.....+|+||.||||+|+||++|+| T Consensus 161 ~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~s 240 (472) T protein:vir:93 161 PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEIS 240 (472) T ss_pred EEEcCCCCCceEEEEEEEEeecceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCCCCCC Confidence 99999889999999999999999999999999999999999988888888888889999999999999999999999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceeeecccCHHHHHHHHHH Q lcl|Aclame:pro 261 DIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 340 (492) Q Consensus 261 ~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~ 340 (492) +|+++++|+|+||.++|++++.++++++|+++++|.+.++.+++...++..+++.++++|+++|++++++.+++++++++ T Consensus 241 ~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 320 (472) T protein:vir:93 241 DIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 320 (472) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCcccchhhHHHHhhccccccCCCCcceeEeecCCHHHHHHHHHH Confidence 99999999999999999999999999999999999998888888888888899999999999999999999999999999 Q ss_pred HHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCc Q lcl|Aclame:pro 341 LYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVA 420 (492) Q Consensus 341 l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~ 420 (492) |+++|+.+|++|+++++.+++|+||+||++++.+|..||+++++.|+.+|++++++++++++.+.++.+++|+|++++|. T Consensus 321 l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~v~f~~~~p~ 400 (472) T protein:vir:93 321 LYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVA 400 (472) T ss_pred HHHHHHHHhCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 421 NTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 421 d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) |.++.++++++++|++|+||+++++|+++|+++|++||++|+++.++.++...+.+.++++++++++++++| T Consensus 401 ~~~~~~~~~~k~~giis~et~l~~l~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~e 472 (472) T protein:vir:93 401 NTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNNKESE 472 (472) T ss_pred CHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccCcCcccCCCCCCCCCCCcccCC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 No 5 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=100.00 E-value=2.3e-108 Score=610.65 Aligned_cols=474 Identities=55% Similarity=0.897 Sum_probs=438.6 Q ss_pred HhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc Q lcl|Aclame:pro 14 LIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLK 93 (492) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~ 93 (492) |.+.. .|+-+++.++. .+...+.+.+...++|.+++++|..++++++++++||+|+|+|++++.+....+.....+ T Consensus 1 ~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:95 1 MINII--RMPWDKPYGEE--VVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDYTK 76 (474) T ss_pred Ccccc--cCCCCCCCCcc--hhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhhhcccccccc Confidence 33322 24444333332 333456667788899999999999999999999999999999999988887778888889 Q ss_pred cccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 94 PDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFR 173 (492) Q Consensus 94 ~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~ 173 (492) +++||++||+++||++.++||+|+|++++++++...+.++.|++|++++.+.+++++++++|+||+++|.+++|++++++ T Consensus 77 ~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~~~~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~ 156 (474) T protein:vir:95 77 PDWRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKVLDVIHQVLDTRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFR 156 (474) T ss_pred cccccccchHHHHHHhhhhhhcccCceeccCChHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec Q lcl|Aclame:pro 174 VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK 253 (492) Q Consensus 174 ~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~ 253 (492) ++|++++|+|+++..+++++++|+|..+...++++|++.++.+|+..++...........+......+|+||.||||+|+ T Consensus 157 ~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~ 236 (474) T protein:vir:95 157 VPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFK 236 (474) T ss_pred EcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEec Confidence 99999999999999999999999999998899999999999999988887776666666777888889999999999999 Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceeeecccCHHH Q lcl|Aclame:pro 254 NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVEN 333 (492) Q Consensus 254 nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 333 (492) |++.|.|+|+++++|||+||.++|++++.++++++|+++++|+..++.+++...++..+++.++++|+++|++++.+.++ T Consensus 237 nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 316 (474) T protein:vir:95 237 NNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGEDLSEFMEGLKYYKAINVSSDGGVETIQVEVPVAS 316 (474) T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcccccchhhhhhccceeeccCCCceeEEeccCCHHH Confidence 99999999999999999999999999999999999999999998888888888888899999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEE Q lcl|Aclame:pro 334 SKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDIS 413 (492) Q Consensus 334 ~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~ 413 (492) ++.++++|+++|+.+|++|+++++++++++||+||+++++++.+||..+++.|+.+|++++++|++++|...++.+++++ T Consensus 317 ~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~ 396 (474) T protein:vir:95 317 TKEYLDMMRAYIVEFGQGVDFQTDKFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEIT 396 (474) T ss_pred HHHHHHHHHHHHHHHhCCcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) |++++|.|.++.+++++++ |++|+||+++++|+++|+++|++||++|+++..++++...+++.+.++++.++++++.| T Consensus 397 f~~~~p~~~~e~a~~~~~~-giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:95 397 FNFNVMVNDLEQSQIGAQS-QYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred ecCCCccCHHHHHHHHHHc-CCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 9999999999999998874 99999999999999999999999999999998888888888888888888888888888 No 6 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=100.00 E-value=2.3e-108 Score=610.65 Aligned_cols=474 Identities=55% Similarity=0.897 Sum_probs=438.6 Q ss_pred HhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc Q lcl|Aclame:pro 14 LIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLK 93 (492) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~ 93 (492) |.+.. .|+-+++.++. .+...+.+.+...++|.+++++|..++++++++++||+|+|+|++++.+....+.....+ T Consensus 1 ~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:96 1 MINII--RMPWDKPYGEE--VVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDYTK 76 (474) T ss_pred Ccccc--cCCCCCCCCcc--hhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhhhcccccccc Confidence 33322 24444333332 333456667788899999999999999999999999999999999988887778888889 Q ss_pred cccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 94 PDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFR 173 (492) Q Consensus 94 ~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~ 173 (492) +++||++||+++||++.++||+|+|++++++++...+.++.|++|++++.+.+++++++++|+||+++|.+++|++++++ T Consensus 77 ~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~~~~n~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~~i~~ 156 (474) T protein:vir:96 77 PDWRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKVLDVIHQVLDTRWDNKLIDILTAASNKGIDWLQVYINEDGELKLFR 156 (474) T ss_pred cccccccchHHHHHHhhhhhhcccCceeccCChHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEEeeeCCCCceEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec Q lcl|Aclame:pro 174 VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK 253 (492) Q Consensus 174 ~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~ 253 (492) ++|++++|+|+++..+++++++|+|..+...++++|++.++.+|+..++...........+......+|+||.||||+|+ T Consensus 157 ~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~ 236 (474) T protein:vir:96 157 VPAEQAIPIWTDKEREQLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFK 236 (474) T ss_pred EcccceEEEEcCCCCCceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEec Confidence 99999999999999999999999999998899999999999999988887776666666777888889999999999999 Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceeeecccCHHH Q lcl|Aclame:pro 254 NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVEN 333 (492) Q Consensus 254 nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 333 (492) |++.|.|+|+++++|||+||.++|++++.++++++|+++++|+..++.+++...++..+++.++++|+++|++++.+.++ T Consensus 237 nn~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 316 (474) T protein:vir:96 237 NNPEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGEDLSEFMEGLKYYKAINVSSDGGVETIQVEVPVAS 316 (474) T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcccccchhhhhhccceeeccCCCceeEEeccCCHHH Confidence 99999999999999999999999999999999999999999998888888888888899999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEE Q lcl|Aclame:pro 334 SKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDIS 413 (492) Q Consensus 334 ~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~ 413 (492) ++.++++|+++|+.+|++|+++++++++++||+||+++++++.+||..+++.|+.+|++++++|++++|...++.+++++ T Consensus 317 ~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~ 396 (474) T protein:vir:96 317 TKEYLDMMRAYIVEFGQGVDFQTDKFGSATSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEIT 396 (474) T ss_pred HHHHHHHHHHHHHHHhCCcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) |++++|.|.++.+++++++ |++|+||+++++|+++|+++|++||++|+++..++++...+++.+.++++.++++++.| T Consensus 397 f~~~~p~~~~e~a~~~~~~-giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:96 397 FNFNVMVNDLEQSQIGAQS-QYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred ecCCCccCHHHHHHHHHHc-CCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 9999999999999998874 99999999999999999999999999999998888888888888888888888888888 No 7 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=100.00 E-value=1e-106 Score=601.63 Aligned_cols=474 Identities=56% Similarity=0.917 Sum_probs=441.1 Q ss_pred HhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc Q lcl|Aclame:pro 14 LIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLK 93 (492) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~ 93 (492) |.| +.-++++.++++. .+.......+...++|.+++++|..+++||+++++||+|+|+|++++++.......+..+ T Consensus 1 ~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:94 1 MFN--IIRMPWDKPYGEE--VVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDK 76 (474) T ss_pred Ccc--cccccCCCchhhH--HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhcccccccccc Confidence 333 2345566666554 333445555577889999999999999999999999999999999988887777888899 Q ss_pred cccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 94 PDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFR 173 (492) Q Consensus 94 ~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~ 173 (492) +++||++||+++||++.++|++|+|++++++++...+.|+.|++|+++..+.++++.++++|+||+++|.+++|.+++++ T Consensus 77 ~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~ 156 (474) T protein:vir:94 77 PDWRITTNFHQNLVDQKVSYVASKPVTYSCEDENVLKVIHDVLDTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFR 156 (474) T ss_pred CcceeecchHHHHHHHHHhhhhcCCceeccCcHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec Q lcl|Aclame:pro 174 VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK 253 (492) Q Consensus 174 ~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~ 253 (492) ++|++++|+||++..+++++++|+|..++..++++|++..+++|+...+...........+......+|+||+||||+|+ T Consensus 157 ~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~ 236 (474) T protein:vir:94 157 VPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFK 236 (474) T ss_pred EcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEec Confidence 99999999999998999999999999999999999999999999988877766666666677788899999999999999 Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceeeecccCHHH Q lcl|Aclame:pro 254 NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVEN 333 (492) Q Consensus 254 nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 333 (492) ||+.|+|+|+++++|||+||.++|++++.++++++|+++++|+++++.+++...++..+++.++++++++|++++.+.++ T Consensus 237 nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 316 (474) T protein:vir:94 237 NNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDLEEFMRGLKYYKAINVDGDGGVETIQVEVPVSS 316 (474) T ss_pred CCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhhhhhhccceeeccCCCceeEEeecCCHHH Confidence 99999999999999999999999999999999999999999999888888888888899999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEE Q lcl|Aclame:pro 334 SKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDIS 413 (492) Q Consensus 334 ~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~ 413 (492) +++++++|++.|+.+|++|++++++++|++||+||+++++++.+||.++++.|+.+|++++++|+++++.+.++.+++|+ T Consensus 317 ~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~ 396 (474) T protein:vir:94 317 TKEYIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEIS 396 (474) T ss_pred HHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) |++++|.|.++.|++++++ |++|+||+++++|+++|+++|++||++|+++..+..+...+.+.+.+.++++++++++| T Consensus 397 f~~~~p~~~~e~a~~~~~~-g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:94 397 FNFNRMMNDAEQSQIIAQS-QYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred eccCcccCHHHHHHHHHHc-CCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcccccC Confidence 9999999999999999986 89999999999999999999999999999999889888888999999999999999999 No 8 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=100.00 E-value=1e-106 Score=601.63 Aligned_cols=474 Identities=56% Similarity=0.917 Sum_probs=441.1 Q ss_pred HhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc Q lcl|Aclame:pro 14 LIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLK 93 (492) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~ 93 (492) |.| +.-++++.++++. .+.......+...++|.+++++|..+++||+++++||+|+|+|++++++.......+..+ T Consensus 1 ~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:97 1 MFN--IIRMPWDKPYGEE--VVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDK 76 (474) T ss_pred Ccc--cccccCCCchhhH--HHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhcccccccccc Confidence 333 2345566666554 333445555577889999999999999999999999999999999988887777888899 Q ss_pred cccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 94 PDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFR 173 (492) Q Consensus 94 ~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~ 173 (492) +++||++||+++||++.++|++|+|++++++++...+.|+.|++|+++..+.++++.++++|+||+++|.+++|.+++++ T Consensus 77 ~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~i~~ 156 (474) T protein:vir:97 77 PDWRITTNFHQNLVDQKVSYVASKPVTYSCEDENVLKVIHDVLDTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFR 156 (474) T ss_pred CcceeecchHHHHHHHHHhhhhcCCceeccCcHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEecCCCeeEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec Q lcl|Aclame:pro 174 VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK 253 (492) Q Consensus 174 ~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~ 253 (492) ++|++++|+||++..+++++++|+|..++..++++|++..+++|+...+...........+......+|+||+||||+|+ T Consensus 157 ~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~ 236 (474) T protein:vir:97 157 VPAEQAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFK 236 (474) T ss_pred EcccceEEEEcCCCCCceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEec Confidence 99999999999998999999999999999999999999999999988877766666666677788899999999999999 Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceeeecccCHHH Q lcl|Aclame:pro 254 NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVEN 333 (492) Q Consensus 254 nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 333 (492) ||+.|+|+|+++++|||+||.++|++++.++++++|+++++|+++++.+++...++..+++.++++++++|++++.+.++ T Consensus 237 nn~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 316 (474) T protein:vir:97 237 NNPEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDLEEFMRGLKYYKAINVDGDGGVETIQVEVPVSS 316 (474) T ss_pred CCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhhhhhhccceeeccCCCceeEEeecCCHHH Confidence 99999999999999999999999999999999999999999999888888888888899999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEE Q lcl|Aclame:pro 334 SKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDIS 413 (492) Q Consensus 334 ~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~ 413 (492) +++++++|++.|+.+|++|++++++++|++||+||+++++++.+||.++++.|+.+|++++++|+++++.+.++.+++|+ T Consensus 317 ~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i~v~ 396 (474) T protein:vir:97 317 TKEYIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDIEIS 396 (474) T ss_pred HHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) |++++|.|.++.|++++++ |++|+||+++++|+++|+++|++||++|+++..+..+...+.+.+.+.++++++++++| T Consensus 397 f~~~~p~~~~e~a~~~~~~-g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:97 397 FNFNRMMNDAEQSQIIAQS-QYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred eccCcccCHHHHHHHHHHc-CCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcccccC Confidence 9999999999999999986 89999999999999999999999999999999889888888999999999999999999 No 9 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=100.00 E-value=3.4e-106 Score=598.77 Aligned_cols=474 Identities=56% Similarity=0.898 Sum_probs=444.0 Q ss_pred CceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccc Q lcl|Aclame:pro 18 GNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDR 97 (492) Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~r 97 (492) --+++++.-|....=..+...+...+...++|.+++++|..++++++++.+||.|+|+|++++++.......+..++++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~r~~~~~~~~~~~~~~~~~k 80 (474) T protein:vir:95 1 MFNIIRMPWDKPYGEEVVEQLKPQFETQEEMIIRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVYGNIDYDKPDWR 80 (474) T ss_pred CcceeecCCCCchhhHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcccCchhccccccccccccccccccce Confidence 45667777775555445555666777888999999999999999999999999999999999988888888888999999 Q ss_pred cccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEccc Q lcl|Aclame:pro 98 MITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAE 177 (492) Q Consensus 98 i~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~ 177 (492) |++||+++||++.++||+|+|+++++++++..+.|+.|++|+++..+.++++.++++|+||++||.+++|++++++++|+ T Consensus 81 i~~n~~~~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~~i~~~~p~ 160 (474) T protein:vir:95 81 ITTNFHQNLVDQKVSYVASKPVTYSCEDESVLKIIHDVLDTRWDNKLIDILTATSNKGIDWLQVYINENGEMKLFRVPAE 160 (474) T ss_pred eccchHHHHHHHHHhhhccCCceeccCchHHHHHHHHHHhccHHHHHHHHHHHHhhcCcEEEEEEecCCCceEEEEEccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccC Q lcl|Aclame:pro 178 QGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDL 257 (492) Q Consensus 178 ~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~ 257 (492) +++|+|+++..+++.+++++|..++...+++|++.++++|+...+..................+|+||.||||+|+||+. T Consensus 161 ~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~ 240 (474) T protein:vir:95 161 QAIPIWVDKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFKNNPE 240 (474) T ss_pred ceEEEEcCCCCCceEEEEEEEEEcCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeecCCCC Confidence 99999999989999999999999999999999999999998888776665555566667778899999999999999999 Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceeeecccCHHHHHHH Q lcl|Aclame:pro 258 EISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKY 337 (492) Q Consensus 258 ~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 337 (492) |+|+|+++++|||+||.++|++++.++++++|+++++|+++++..++...++..+++.++++|+++|++++++.++++.+ T Consensus 241 g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~ 320 (474) T protein:vir:95 241 EVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYILKGYEGQDLEEFMRGLKYYKAINVDGDGGVETIQVEVPVSSTKEY 320 (474) T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhhhhhhccceeeccCCCceeEEeecCCHHHHHHH Confidence 99999999999999999999999999999999999999998888888888889999999999999999999999999999 Q ss_pred HHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCC Q lcl|Aclame:pro 338 LDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYN 417 (492) Q Consensus 338 i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~ 417 (492) +++|.++|+.+|++|+++++++++++||+||+++++++..||+.+++.|+.+|++++++|++++|...++.+++|+|+++ T Consensus 321 ~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~v~f~~~ 400 (474) T protein:vir:95 321 IDLMRAYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNLKMDVKDIEISFNFN 400 (474) T ss_pred HHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEeccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 418 KVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 418 ~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +|.|.++.|++++++ |++|+||+++++|+++|+++|++||++|+++..++++...+.+++..+++++++++++| T Consensus 401 ~p~d~~e~a~~~~~~-g~iS~et~i~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 474 (474) T protein:vir:95 401 RMMNDAEQSQIIAQS-QYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQERSNDKESE 474 (474) T ss_pred CCcCHHHHHHHHHhc-CCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccccccCCCCcCCCCCccCCCC Confidence 999999999999986 99999999999999999999999999999999999888888889999999999999999 No 10 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=100.00 E-value=4.1e-104 Score=587.40 Aligned_cols=471 Identities=48% Similarity=0.838 Sum_probs=420.6 Q ss_pred hcCCceeccCCCcHH-HHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQT-EIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLK 93 (492) Q Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~ 93 (492) |.+.|-++ +++.. +.++. .....+...++|.+++++|..+++|++++.+||.|+|+|++++.+..........+ T Consensus 1 ~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~ 75 (478) T protein:vir:10 1 MISINWPW--DKPYHEQVVEQ---IKPKYETQEEMILRLVREHKENIDNITMGERYYNHHPDILDAPFKRDVNGDYDETK 75 (478) T ss_pred CccccccC--CchhhhHHHHH---hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhccccccccc Confidence 66666444 44433 33433 34445567889999999999999999999999999999999988877777778889 Q ss_pred cccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 94 PDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFR 173 (492) Q Consensus 94 ~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~ 173 (492) +++||++||+++||++.++|+||+|+++++++++..+.++.|++|+++..+.++++.++++|++|++||.|++|++++++ T Consensus 76 ~~~ki~~n~~k~ivd~~~~yl~g~p~~~~~~~~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~~~~ 155 (478) T protein:vir:10 76 PDWRMYTNYHQNLVDQKVAYAVANPVTFGVDNDKALKQIQHTLNHKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFR 155 (478) T ss_pred ccceeccchHHHHHHHHhhhhcccCceeecCChHHHHHHHHHHhccHHHHHHHHHHHHhhCCeEEEEEEecCCCceEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccc----ccccccccceeccCCccce Q lcl|Aclame:pro 174 VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSN----NLENSKTHFSTGSWGKIPF 249 (492) Q Consensus 174 ~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~iPv 249 (492) ++|++++|+|+++..+++.+++|+|..++...+++|++..+++|....+........ ...+......+|+||+||| T Consensus 156 ~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPv 235 (478) T protein:vir:10 156 VPAEQAVPIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPF 235 (478) T ss_pred EcccceEEEEcCCCCCceEEEEEEEeeeCceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceE Confidence 999999999999989999999999999999999999999999998877655433221 2223445667899999999 Q ss_pred EeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceec--CCCCcceeeec Q lcl|Aclame:pro 250 IPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKV--SDNGGVDTIQV 327 (492) Q Consensus 250 v~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~l~~ 327 (492) |+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|+++++..++...++..+++.+ +++++++|+++ T Consensus 236 v~~~n~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 315 (478) T protein:vir:10 236 IPFKNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDMKDFMHNLKYYKAISVAGESGSGVDTIKV 315 (478) T ss_pred EEeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCCcccccchhhhhhhCceeEecCCCCCcceEEee Confidence 9999999999999999999999999999999999999999999999998888888888888877776 45789999999 Q ss_pred ccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Q lcl|Aclame:pro 328 EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEH 407 (492) Q Consensus 328 ~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~ 407 (492) +.+.++++.++++|++.|+.+|++|+++++++++++||+||+++++++.+||..+++.|+.+|++++++++++++...++ T Consensus 316 ~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~d~ 395 (478) T protein:vir:10 316 EVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVRV 395 (478) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCcCcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCC Q lcl|Aclame:pro 408 KDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSN 487 (492) Q Consensus 408 ~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (492) .+++|+|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++..++.....++..+.. +++++ T Consensus 396 ~~i~i~f~~~~p~~~~e~~~~~~~~~g~iS~et~i~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~--~~~~~ 473 (478) T protein:vir:10 396 QDIEITFNFNVMVNELENSQIAMNSTGLLSKETILGNHSWVQDPVAEMERIEQENIELNQQLPDIEEGLNDEQ--QRQSE 473 (478) T ss_pred ccceEEeCCCCCCCHHHHHHHHHHHhCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCcccc--cccCc Confidence 9999999999999999999999999999999999999999999999999999999988877766655555433 44444 Q ss_pred CCCCC Q lcl|Aclame:pro 488 NKESE 492 (492) Q Consensus 488 ~~~~e 492 (492) +++.| T Consensus 474 d~~~e 478 (478) T protein:vir:10 474 DNQSE 478 (478) T ss_pred CCCCC Confidence 45555 No 11 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=100.00 E-value=7e-103 Score=580.62 Aligned_cols=472 Identities=48% Similarity=0.848 Sum_probs=416.8 Q ss_pred hcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKP 94 (492) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~ 94 (492) |.+.|-|-+ -|..+++++.+.. ..+...++|.+++++|..++++++++++||+|+|+++.++.+..........++ T Consensus 1 ~~~~~~~~~-~~~~~e~~~~~~~---~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~ 76 (478) T protein:vir:10 1 MISINWPWD-KPYHEQVVEQIKP---KYETQEEMILRLVREHKENIDNITMGERYYNHHPDILDAPPKRDVNGDYDETKP 76 (478) T ss_pred CccccCCCC-chhHHHHHHHHhh---ccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhccccccccccccccccc Confidence 555554331 2235555655543 333457789999999999999999999999999999988877777777778899 Q ss_pred ccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEE Q lcl|Aclame:pro 95 DDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRV 174 (492) Q Consensus 95 ~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~ 174 (492) ++|+++||+++||++.++|+||+|+++++++++..+.++.|++|++++.+.+++++++++|+||+++|.|++|+++++++ T Consensus 77 ~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~d~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~~~~~~ 156 (478) T protein:vir:10 77 DWRMYTNYHQNLVDQKVAYAVANPVTFGVDNDKALKQIQHTLNHKWDDKLVDILTAASNKGIEWVQPYVDEEGEFKTFRV 156 (478) T ss_pred cceeccchHHHHHHHHHhhhccCCeeeecCChHHHHHHHHHHhcCHHHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccc----cccccccccceeccCCccceE Q lcl|Aclame:pro 175 PAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYS----NNLENSKTHFSTGSWGKIPFI 250 (492) Q Consensus 175 ~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~iPvv 250 (492) +|++++|+|+++..+++.+++++|..+...++++|++.++++|+...+....... ....+......+|+||.|||| T Consensus 157 ~p~~~~~i~d~~~~~~~~~~v~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv 236 (478) T protein:vir:10 157 PAEQAVPIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFI 236 (478) T ss_pred cccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceE Confidence 9999999999988999999999999999999999999999999887765543322 222334456778999999999 Q ss_pred eecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecC--CCCcceeeecc Q lcl|Aclame:pro 251 PFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVS--DNGGVDTIQVE 328 (492) Q Consensus 251 ~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~l~~~ 328 (492) +|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|++.++..++...++..+++.+. ++++++|++++ T Consensus 237 ~~~n~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (478) T protein:vir:10 237 PFKNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDMKDFMHNLKYYKAISVAGESGSGVDTIKVE 316 (478) T ss_pred EeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccchhhhhhhhcceEEecCCCCCcceEEeec Confidence 9999999999999999999999999999999999999999999999888878888788888787764 67899999999 Q ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcce Q lcl|Aclame:pro 329 VPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHK 408 (492) Q Consensus 329 ~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 408 (492) ++.++++.++++|+++|+.+|++|+++++++++|+||+||+++++.+.+||+++++.|+.+|++++++|++++|...+.. T Consensus 317 ~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~~~~~ 396 (478) T protein:vir:10 317 VPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVKVQ 396 (478) T ss_pred CChHHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC Q lcl|Aclame:pro 409 DVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN 488 (492) Q Consensus 409 ~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (492) +++++|++++|+|.++.|+++++++|++|+||+++++|+++|+++|++||++|+++..+.......+..+.. +++.++ T Consensus 397 ~i~i~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~--~~~~~~ 474 (478) T protein:vir:10 397 DIEITFNFNVMVNELENSQIAMNSTGLLSKETILSNHAWVEDPVAEMERIEQENIELNQQLPDIEEGLNGEQ--QRQSEN 474 (478) T ss_pred cceEEecCCCCCCHHHHHHHHHHHhCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCC--CCCCCC Confidence 999999999999999999999999999999999999999999999999999999888777666654433333 333333 Q ss_pred CCCC Q lcl|Aclame:pro 489 KESE 492 (492) Q Consensus 489 ~~~e 492 (492) ..+| T Consensus 475 ~~~~ 478 (478) T protein:vir:10 475 NQPE 478 (478) T ss_pred CCCC Confidence 3333 No 12 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=100.00 E-value=2.6e-102 Score=577.47 Aligned_cols=469 Identities=51% Similarity=0.881 Sum_probs=415.2 Q ss_pred CCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccc Q lcl|Aclame:pro 17 GGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDD 96 (492) Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ 96 (492) =+-+-|+-++...+.+ +.......+...++|.++|++|..++++++++++||+|+|+|++++.+...+......++++ T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ 78 (474) T protein:vir:96 1 MIVIFWPNEKPYHERV--VEQIKPKYETQEEMIIRLINDHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGEIDPLKPDW 78 (474) T ss_pred CeeeccCCCchhhhhH--HHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhccchhcccccccccccch Confidence 1223354444333322 33455666778899999999999999999999999999999999998888878888889999 Q ss_pred ccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcc Q lcl|Aclame:pro 97 RMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPA 176 (492) Q Consensus 97 ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p 176 (492) ||++||+++||++.++||+|+|+++++++++..+.++.|++|+++..+.++++.++++|+||++||.|++|++++++++| T Consensus 79 ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~i~~~~p 158 (474) T protein:vir:96 79 RMFTNYHQNLVDQKVAYAVANPVTFSSDDDKSLKTIQEVLNHKWDDKLVDILTAASNKGIEWLQPYIDENGEFKTFRVPA 158 (474) T ss_pred hcccchHHHHHHhhhhhhcccCceeecCchHHHHHHHHHHhcCHHHHHHHHHHHHHhcCeeEEEEEecCCCceEEEEEcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccc----ccccccccceeccCCccceEee Q lcl|Aclame:pro 177 EQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSN----NLENSKTHFSTGSWGKIPFIPF 252 (492) Q Consensus 177 ~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~iPvv~~ 252 (492) ++++|+|+++..+++.+++|+|..+....+++|++..+++|.+.++........ ..........+|+||.||||+| T Consensus 159 ~~~~~v~d~~~~~~~~~~vr~~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~ 238 (474) T protein:vir:96 159 EQAIPIWTNKERDTLKAFIRYYRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPF 238 (474) T ss_pred cceEEEEcCCCCCceEEEEEEEeecCceEEEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEe Confidence 999999999989999999999999999999999999999998877655443222 1223445677899999999999 Q ss_pred cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecC-CCCcceeeecccCH Q lcl|Aclame:pro 253 KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVS-DNGGVDTIQVEVPV 331 (492) Q Consensus 253 ~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~l~~~~~~ 331 (492) +|++.|+|+|+++++|||+||.++|++++.++++++|+++++|+++++..++...++..+++.++ ++++|+|++++++. T Consensus 239 ~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 318 (474) T protein:vir:96 239 KNNPQEMSDLFMYKTIIDAMDKRLSDTQNTFDESTELIYILKGYEGQDLDEFMRNLKYYKAINVDGDGSGVDTIQIEVPV 318 (474) T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccccchhhhhhcCceEEecCCCCceeEEeecCCh Confidence 99999999999999999999999999999999999999999999888878888888888888886 56799999999999 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeee Q lcl|Aclame:pro 332 ENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVD 411 (492) Q Consensus 332 ~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~ 411 (492) ++++.++++|+++|+.+|++|+++++++++++||+||+++++++.+||+.+++.|+.+|++++++|+++++...++.+++ T Consensus 319 ~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~~~~~~~~i~ 398 (474) T protein:vir:96 319 QSSKEYLDMLRDYVIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLNIKVQDVE 398 (474) T ss_pred HHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC Q lcl|Aclame:pro 412 ISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN 488 (492) Q Consensus 412 i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (492) |+|++++|.|.++.++++++ +|++|+||+++++|+++|+++|++||++|+++..+...+..++..+...++++..+ T Consensus 399 i~f~~~~p~~~~e~~~~~~~-ag~iS~et~~~~~~~v~d~~~E~~ri~~E~~e~~~~~~~~~~~~~~~~~d~~~e~~ 474 (474) T protein:vir:96 399 ITFNFNVMVNELEQSQIGVQ-SQYLSKETVVTNHPWVDDPVAELERIEQDNIDFNKQLPPLEGDANGRAQDNESETN 474 (474) T ss_pred EEeccCCCcCHHHHHHHHHh-cCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCC Confidence 99999999999999998865 59999999999999999999999999999988887776655444333333222222 No 13 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=100.00 E-value=2.7e-101 Score=571.89 Aligned_cols=470 Identities=18% Similarity=0.278 Sum_probs=391.4 Q ss_pred Chh---hhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 1 MQF---IQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDI 76 (492) Q Consensus 1 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i 76 (492) -.| .++..---.+|.+++|..|.|++++.+.... .+.|.++|.+|.. +.++|+++.+||+|+|++ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-----------~~~i~~~i~~~~~~~~~r~~~l~~YY~g~~~i 73 (512) T protein:vir:97 5 NEFETDTDLRENRNYLFNDEANVVYTYDGTESDLLQN-----------INEVSKYIEHHMDYQRPRLKVLSDYYEGKTKN 73 (512) T ss_pred eeccCceeeeeCceeeeccccccccccCchhhhhhhh-----------HHHHHHHHHHHHHhhHHHHHHHHHHhcccCcc Confidence 233 4455555678999999999999988776543 3568888888864 678999999999999999 Q ss_pred ccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 77 VKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKG 155 (492) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G 155 (492) ++++... ....++++|+++||+++||++.++|++|+|+++++++++..+.|+.|++ |+++..+.++++++++|| T Consensus 74 ~~~~~~~-----~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G 148 (512) T protein:vir:97 74 LVELTRR-----KEEYMADNRVAHDYASYISDFINGYFLGNPIQCQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYG 148 (512) T ss_pred ccccCcc-----cccccCcceeecchHHHHHHHHhhhhcccCceeccCChHHHHHHHHHHhhcCHHHHHHHHHHHHHhcC Confidence 8766442 3445788999999999999999999999999999999999999998875 789999999999999999 Q ss_pred eEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc--------ceeEEEEecceEEEEEEecceeeec Q lcl|Aclame:pro 156 IEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN--------ETKVEYWDKVTVNYYVYENGSLIPD 227 (492) Q Consensus 156 ~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (492) +||++||.|++|++++++++|++++|+||++..+++++++|+|.... ...+++|+...+++|........ T Consensus 149 ~ay~~vy~ded~~~~i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~-- 226 (512) T protein:vir:97 149 KAYELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGL-- 226 (512) T ss_pred eEEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcc-- Confidence 99999999999999999999999999999998899999999997532 23567899998888765544321 Q ss_pred cccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHh Q lcl|Aclame:pro 228 YSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRL 307 (492) Q Consensus 228 ~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 307 (492) ..........+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|....+..++... T Consensus 227 ---~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~ 303 (512) T protein:vir:97 227 ---KLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQ 303 (512) T ss_pred ---cccccccccccccCcccceEeecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCchhhhhh Confidence 22345567789999999999999999999999999999999999999999999999999999999766554443322 Q ss_pred hhhccce--------------ecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHH Q lcl|Aclame:pro 308 LRYYGAI--------------KVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYT 373 (492) Q Consensus 308 ~~~~~~~--------------~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~ 373 (492) ...+++ ..+++++++|++++.+.+++++++++|+++|+.+|++|+++++++++|+||+||+++++ T Consensus 304 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~ 382 (512) T protein:vir:97 304 -KEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLF 382 (512) T ss_pred -hhcccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHHHHHHHH Confidence 111221 23457889999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCC Q lcl|Aclame:pro 374 NLNLKADKLARKAKVAIQELLWFVFEHFDIK------GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPF 447 (492) Q Consensus 374 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~ 447 (492) ++.+||+.+++.|+.+|++++++|+++++.. .++.+++++|++++|+|.++.++++++++|++|+||+++++|+ T Consensus 383 ~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl~giiS~et~~~~l~~ 462 (512) T protein:vir:97 383 GLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSF 462 (512) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHhccCchHHHHHhCCC Confidence 9999999999999999999999999987643 3456789999999999999999999999999999999999999 Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCC---cCCCCCCCCCC Q lcl|Aclame:pro 448 VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQ---QQERSNNKESE 492 (492) Q Consensus 448 v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e 492 (492) ++|+++|++||++|+++..+..+...+...++.. +++++++...| T Consensus 463 v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (512) T protein:vir:97 463 FQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDK 510 (512) T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccc Confidence 9999999999999998766554433322222222 11111111111 No 14 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=100.00 E-value=9.4e-101 Score=568.96 Aligned_cols=470 Identities=17% Similarity=0.266 Sum_probs=393.1 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHL-EKLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~YY~G~~~i~~~ 79 (492) -.|..+..++-++|.+.+|..|.|..++...... .+.|.++|++|. .+++||+++++||+|+|+++.+ T Consensus 8 ~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~-----------~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~ 76 (511) T protein:vir:93 8 ETDTDLRGNINYLFNDEANVVYTYDGTESDLLQN-----------VNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred hhhhhhhhhhhhhhhhhhCCcccccchhhhhhcc-----------HHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccc Confidence 5677777888889999999999999866653322 456888888886 4789999999999999999876 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~ 158 (492) +... ....++++|+++||+++||++.++||+|+|+++++++++..+.|+.|++ |+++..+.++++++++||+|| T Consensus 77 ~~~~-----~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ay 151 (511) T protein:vir:93 77 LTRR-----KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEVIEAFNDLNDVESHNRSLGLDLSIYGKAY 151 (511) T ss_pred cCcC-----cccccCcceeecchHHHHHHHHhhhhcccCeeeccCChHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeE Confidence 6443 3345788999999999999999999999999999999999999998875 789999999999999999999 Q ss_pred EEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc--------ceeEEEEecceEEEEEEecceeeecccc Q lcl|Aclame:pro 159 LHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN--------ETKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) Q Consensus 159 ~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (492) ++||.|++|++++++++|++++|+||++..++++++||+|.... ..++++|++..+++|........ T Consensus 152 ~~vy~de~~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~----- 226 (511) T protein:vir:93 152 ELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGL----- 226 (511) T ss_pred EEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcc----- Confidence 99999999999999999999999999988899999999987532 23578999999888865543221 Q ss_pred ccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhh Q lcl|Aclame:pro 231 NLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRY 310 (492) Q Consensus 231 ~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 310 (492) ..........+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|.......+.... .. T Consensus 227 ~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~-~~ 305 (511) T protein:vir:93 227 KLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQ-KE 305 (511) T ss_pred ccccccccccccCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCcccCchhhccc-cc Confidence 22345566789999999999999999999999999999999999999999999999999999999765544443322 11 Q ss_pred ccc-------------eecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 311 YGA-------------IKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNL 377 (492) Q Consensus 311 ~~~-------------~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~ 377 (492) .++ ....++++++|++++.+.++++.++++|.++|+.+|++|+++++++++|+||+||+++++++.+ T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ 385 (511) T protein:vir:93 306 ANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQ 385 (511) T ss_pred ccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHH Confidence 111 1245678999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC------cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCH Q lcl|Aclame:pro 378 KADKLARKAKVAIQELLWFVFEHFDIKG------EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDL 451 (492) Q Consensus 378 k~~~~~~~~~~~l~~~~~li~~~~~~~~------~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~ 451 (492) ||..+++.|+.+|++++++|+++++... ++.+++++|++++|.|.++.++++++++|++|+||+++++|+++|+ T Consensus 386 k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl~g~iS~et~~~~l~~v~d~ 465 (511) T protein:vir:93 386 RTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDP 465 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCH Confidence 9999999999999999999999876532 4567899999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCc----CCCCCCCCCC Q lcl|Aclame:pro 452 QAELERIEQEQTEYNKQLPNLDDGGADSAQQ----QERSNNKESE 492 (492) Q Consensus 452 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e 492 (492) ++|++||++|+++..+..+...+...++..+ ++..+.++.| T Consensus 466 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (511) T protein:vir:93 466 ELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKK 510 (511) T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCccccccccc Confidence 9999999999887665543322222222211 1111111111 No 15 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=100.00 E-value=1.3e-100 Score=568.25 Aligned_cols=461 Identities=47% Similarity=0.841 Sum_probs=407.1 Q ss_pred CCceeccCCCc-HHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccc Q lcl|Aclame:pro 17 GGNILYPSQPT-QTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPD 95 (492) Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~ 95 (492) =.++-|+=+|+ .+++ ........+...++|.+++++|..+.++|+++++||+|+|+|+.++.+..........+++ T Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~ 77 (468) T protein:vir:96 1 MIDIFWPNEKPYHERV---VEQIKPQYETQEEMILRLITKHKENVEDITVGERYYNHQPDVLFNAPKRNVKGEIDPFKPD 77 (468) T ss_pred CccccCCcCceeehhe---eecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccc Confidence 12333333332 1222 2234455677888999999999999999999999999999999988877777777888999 Q ss_pred cccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 96 DRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVP 175 (492) Q Consensus 96 ~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~ 175 (492) +|+++||++.||++.++|++|+|+++++++++..+.++.|++|++++.+.+++++++++|++|++||.|++|.+++++++ T Consensus 78 ~ki~~n~~~~Iv~~~~~~l~g~p~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 157 (468) T protein:vir:96 78 WRMYTNYHQNLVDQKVAYAVANPVTYGTEDEKSLKTIQEVLNHKWDDKLVDILTAASNKGVEWIQPYVDEQGEFKTFRVP 157 (468) T ss_pred cccccchHHHHHHHHHhhhccCCceeccCChHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceEEEEEc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccc----ccccccccceeccCCccceEe Q lcl|Aclame:pro 176 AEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSN----NLENSKTHFSTGSWGKIPFIP 251 (492) Q Consensus 176 p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~iPvv~ 251 (492) |++++|+|+++..+++.+++|+|..++..++++|++.++.+|...++........ ...+......+|+||+||||+ T Consensus 158 p~~~~~v~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~ 237 (468) T protein:vir:96 158 AEQAIPIWTNKERDELKAFIRLYELDGGERVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIP 237 (468) T ss_pred ccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEE Confidence 9999999999989999999999999999999999999999998877655443222 223445667789999999999 Q ss_pred ecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecC--CCCcceeeeccc Q lcl|Aclame:pro 252 FKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVS--DNGGVDTIQVEV 329 (492) Q Consensus 252 ~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~l~~~~ 329 (492) |+|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|++.++.+++...++.++++.++ ++|+++|++++. T Consensus 238 ~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~l~~~~ 317 (468) T protein:vir:96 238 FKNNPQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELIYVLKGYEGEDLEEFMYNLKYYKAINVDGDGSGGVDTIQIDV 317 (468) T ss_pred ecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccccchhhhhhhcCceEEecCCCCCcceEEeecC Confidence 999999999999999999999999999999999999999999999888778888888888888775 457899999999 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccee Q lcl|Aclame:pro 330 PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKD 409 (492) Q Consensus 330 ~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~ 409 (492) +.++++.++++|+++|+.+|++|+++++++++++||+||+++++++.+||+.+++.|+.+|++++++|++++|...+..+ T Consensus 318 ~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~ 397 (468) T protein:vir:96 318 PVQSAKEYLDMLRDYVIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSIKVQD 397 (468) T ss_pred ChHHHHHHHHHHHHHHHHHhCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCC Q lcl|Aclame:pro 410 VDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERS 486 (492) Q Consensus 410 i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (492) ++|+|++++|.|.++.|++++++ |++|+||+++++|+++||++|++||++|+++..+..+++.+.+.+.. + T Consensus 398 i~i~f~~~~p~d~~e~a~~~~~~-g~iS~et~i~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~-----~ 468 (468) T protein:vir:96 398 VEITFNFNVMVNELEQSQIGVNS-QYLSKETVVTNHPWVDDPVAEMERIDQEELALPSIEEGLNGKENNEP-----T 468 (468) T ss_pred eeEEecCCCCcCHHHHHHHHHhc-CCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCCCC-----C Confidence 99999999999999999998775 99999999999999999999999999999877665554433222111 1 No 16 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=100.00 E-value=1.4e-100 Score=568.02 Aligned_cols=470 Identities=18% Similarity=0.280 Sum_probs=392.3 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~ 79 (492) -.|..+.-++-++|.+.+|..|.|..++.....+ .+.|.++|++|.. +++||+++.+||+|+|+++++ T Consensus 8 ~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~-----------~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~ 76 (511) T protein:vir:99 8 ETDTDLRGNINYLFNDEANVVYTYDGTESDLLQN-----------VNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred hhhhhhhhhhhhhhhhhhCCccccchhhhhhhcc-----------HHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccc Confidence 5677777888889999999999998766553322 4567888888864 678999999999999999876 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~ 158 (492) +... ....++++|+++||+++||++.++||+|+|+++++++++..+.|+.|++ |+++..+.++++.++++|+|| T Consensus 77 ~~~~-----~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~ 151 (511) T protein:vir:99 77 LTRR-----KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAY 151 (511) T ss_pred cCcc-----cccccCcceeecchHHHHHHHHHhhhcccCceeecCchHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeE Confidence 6442 3455788999999999999999999999999999999999999998874 789999999999999999999 Q ss_pred EEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc--------ceeEEEEecceEEEEEEecceeeecccc Q lcl|Aclame:pro 159 LHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN--------ETKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) Q Consensus 159 ~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (492) ++||.+++|++++++++|++++|+||++..+++++++|+|.... ..++++|++..+++|........ T Consensus 152 ~~vy~ded~~~~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~----- 226 (511) T protein:vir:99 152 ELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGL----- 226 (511) T ss_pred EEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCccc----- Confidence 99999999999999999999999999988899999999987532 23577999999888876543221 Q ss_pred ccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhh Q lcl|Aclame:pro 231 NLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRY 310 (492) Q Consensus 231 ~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 310 (492) ..........+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|.......+.... .. T Consensus 227 ~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~-~~ 305 (511) T protein:vir:99 227 KLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQ-KE 305 (511) T ss_pred cccccccccccCCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcccCchhhccc-cc Confidence 22345567789999999999999999999999999999999999999999999999999999999765443333221 11 Q ss_pred ccce-------------ecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 311 YGAI-------------KVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNL 377 (492) Q Consensus 311 ~~~~-------------~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~ 377 (492) .+++ ...++++++|++++.+.+++++++++|.++|+.+|++|+++++++++|+||+||+++++++.+ T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~gn~Sg~Alk~~~~~l~~ 385 (511) T protein:vir:99 306 ANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQ 385 (511) T ss_pred ccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHH Confidence 1222 235578899999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC------cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCH Q lcl|Aclame:pro 378 KADKLARKAKVAIQELLWFVFEHFDIKG------EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDL 451 (492) Q Consensus 378 k~~~~~~~~~~~l~~~~~li~~~~~~~~------~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~ 451 (492) ||..+++.|+.+|++++++|+++++... ++.+++++|++++|.|.++.++++++++|++|+||+++++|+++|+ T Consensus 386 ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl~GiiS~et~l~~l~~v~D~ 465 (511) T protein:vir:99 386 RTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDP 465 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCHHHHHHHHHHHhccCCHHHHHHhCCCCCCH Confidence 9999999999999999999999886432 4567899999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCC---CCCCC Q lcl|Aclame:pro 452 QAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSN---NKESE 492 (492) Q Consensus 452 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e 492 (492) ++|++||++|+++..+..+...+...++..+++..+ ++..+ T Consensus 466 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 509 (511) T protein:vir:99 466 ELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDDSTKDSIDK 509 (511) T ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCcCcccc Confidence 999999999998766554433222222221111111 11111 No 17 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=100.00 E-value=3.4e-100 Score=565.91 Aligned_cols=470 Identities=17% Similarity=0.271 Sum_probs=391.3 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~ 79 (492) -.|..+..++-++|.+.+|..|.|..++...+.. .+.|.++|.+|.. +++||+++.+||+|+|+++++ T Consensus 8 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-----------~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~ 76 (511) T protein:vir:10 8 ETDTDLRGNINYLFNDEANVVYTYDGTESDLLQN-----------VNEVSKCIEHHMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred hhhhhhhhhhhhhhhhhhcCCccCchhhhhcccC-----------HHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccc Confidence 5677777788889999999999999766554322 3568888888865 689999999999999999877 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~ 158 (492) +... ....++++|+++||+++||++.++||+|+|+++++++++..+.|+.|++ |+++..+.++++++++||+|| T Consensus 77 ~~~~-----~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay 151 (511) T protein:vir:10 77 LTRR-----KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAY 151 (511) T ss_pred cCcc-----cccccCcceeecchHHHHHHHHhhhhcccCceeecCchHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeE Confidence 6543 3445788999999999999999999999999999999999999998874 789999999999999999999 Q ss_pred EEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc--------ceeEEEEecceEEEEEEecceeeecccc Q lcl|Aclame:pro 159 LHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN--------ETKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) Q Consensus 159 ~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (492) ++||.|++|++++++++|++++|+|+++..+++++++|+|.... ..++++|++..+++|....+... T Consensus 152 ~~vy~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~----- 226 (511) T protein:vir:10 152 EIMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGL----- 226 (511) T ss_pred EEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCcc----- Confidence 99999999999999999999999999988889999999997532 23567899998888765543221 Q ss_pred ccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhh Q lcl|Aclame:pro 231 NLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRY 310 (492) Q Consensus 231 ~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 310 (492) ..........+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|.......+.... .. T Consensus 227 ~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~-~~ 305 (511) T protein:vir:10 227 KLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQ-KE 305 (511) T ss_pred cccccccccccccCcceeEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeeccccCCchhhccc-hh Confidence 12334566789999999999999999999999999999999999999999999999999999999755444333221 11 Q ss_pred ccce-------------ecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 311 YGAI-------------KVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNL 377 (492) Q Consensus 311 ~~~~-------------~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~ 377 (492) .+++ ..+++++++|++++.+.+++++++++|+++|+.+|++|+++++++++|+||+||+++++++.+ T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ 385 (511) T protein:vir:10 306 ANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQ 385 (511) T ss_pred ccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHH Confidence 2222 234578899999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC------CcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCH Q lcl|Aclame:pro 378 KADKLARKAKVAIQELLWFVFEHFDIK------GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDL 451 (492) Q Consensus 378 k~~~~~~~~~~~l~~~~~li~~~~~~~------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~ 451 (492) ||..+++.|+.+|++++++|+++++.. .++.+++++|++++|+|.++.++++++++|++|+||+++++|+++|+ T Consensus 386 k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~~~~~~~~kl~G~iS~et~~~~l~~v~d~ 465 (511) T protein:vir:10 386 RTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDP 465 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceeeEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHhCCCCCCH Confidence 999999999999999999999987643 24567999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCc----CCCCCCCCCC Q lcl|Aclame:pro 452 QAELERIEQEQTEYNKQLPNLDDGGADSAQQ----QERSNNKESE 492 (492) Q Consensus 452 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~e 492 (492) ++|++||++|+++..+......+...++..+ ++..+.++.| T Consensus 466 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (511) T protein:vir:10 466 ELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVDKK 510 (511) T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcccCccccc Confidence 9999999999887655443322211211111 1111111111 No 18 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=100.00 E-value=7.2e-100 Score=564.10 Aligned_cols=470 Identities=18% Similarity=0.278 Sum_probs=391.8 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~ 79 (492) -.|..+..++-++|.+.+|..|.|..++..... ..+.|.++|.+|.. +++||+++++||.|+|+++.+ T Consensus 8 ~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~-----------~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~ 76 (511) T protein:vir:96 8 ETDTDLRGNINYLFNDEANVVYTYDGTESDLLQ-----------NVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred hhhhhhhhhhhhhhhhhhCCccccchhhhhhhc-----------cHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccc Confidence 567777788888999999999999876655332 24568888888864 678999999999999999876 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~ 158 (492) +... ....++++|+++||+++||++.++||+|+|+++++++++..+.++.|++ |+++..+.+++++++++|+|| T Consensus 77 ~~~~-----~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~ 151 (511) T protein:vir:96 77 LTRR-----KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAY 151 (511) T ss_pred cCcC-----cccccCcceeecchHHHHHHHHHhhhccCCceeecCchHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeE Confidence 5442 3455788999999999999999999999999999999999999988875 789999999999999999999 Q ss_pred EEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc--------ceeEEEEecceEEEEEEecceeeecccc Q lcl|Aclame:pro 159 LHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN--------ETKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) Q Consensus 159 ~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (492) ++||.|++|++++++++|++++|+|+++..+++++++|+|.... ..++++|++..+++|....+... T Consensus 152 ~~vy~ded~~~~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~----- 226 (511) T protein:vir:96 152 ELMIRNQDDETRLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGL----- 226 (511) T ss_pred EEEEeCCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcc----- Confidence 99999999999999999999999999988899999999997532 23567899998888765543221 Q ss_pred ccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhh Q lcl|Aclame:pro 231 NLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRY 310 (492) Q Consensus 231 ~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 310 (492) ..........+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|++++.|.......++... .. T Consensus 227 ~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~-~~ 305 (511) T protein:vir:96 227 KLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQ-KE 305 (511) T ss_pred cccccccccccccCCceeeEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCccCCchhhccc-cc Confidence 22344566789999999999999999999999999999999999999999999999999999999765544443322 11 Q ss_pred ccce-------------ecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 311 YGAI-------------KVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNL 377 (492) Q Consensus 311 ~~~~-------------~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~ 377 (492) .+++ ...++++++|++++.+.++++.++++|.++|+.+|++|+++++++++|+||+||+++++++.+ T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ 385 (511) T protein:vir:96 306 ANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQ 385 (511) T ss_pred ccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHH Confidence 1111 234578899999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC------CcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCH Q lcl|Aclame:pro 378 KADKLARKAKVAIQELLWFVFEHFDIK------GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDL 451 (492) Q Consensus 378 k~~~~~~~~~~~l~~~~~li~~~~~~~------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~ 451 (492) +|..+++.|+.+|++++++|+++++.. .++.+++++|++++|.|.++.++++++++|++|+||+++++|+++|+ T Consensus 386 k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl~G~iS~et~l~~l~~v~D~ 465 (511) T protein:vir:96 386 RTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDP 465 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccceEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCH Confidence 999999999999999999999987653 24567899999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 452 QAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 452 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ++|++||++|+++..+..+...+...++..+.+..++++++ T Consensus 466 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (511) T protein:vir:96 466 ELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDT 506 (511) T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccc Confidence 99999999998776555433222222222211111111111 No 19 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=100.00 E-value=4.9e-100 Score=565.03 Aligned_cols=470 Identities=18% Similarity=0.279 Sum_probs=390.5 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~ 79 (492) -.|..+...+-++|.+.+|..|.|...+..... ..+.|.++|.+|.. +++||+++++||+|+|+++++ T Consensus 8 ~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~-----------~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~ 76 (511) T protein:vir:78 8 ETDTDLRGNINYLFNDEANVVYTYDGTESDLLQ-----------NVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred hhhhhhhhhhhhhhhhhhCCcccccchhhhhhc-----------CHHHHHHHHHHHHHhhhHHHHHHHHHhhccCccccc Confidence 455666667778999999999999876555332 24568888888864 678999999999999999876 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~ 158 (492) +... ....++++|+++||+++||++.++||+|+||++++++++..+.++.|++ |+++.++.++++.+++||+|| T Consensus 77 ~~~~-----~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~ 151 (511) T protein:vir:78 77 LTRR-----KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAY 151 (511) T ss_pred cCcc-----cccccCcceeecchHHHHHHHHhhhhcccCceeecCchHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeE Confidence 5432 3455788999999999999999999999999999999999999888774 789999999999999999999 Q ss_pred EEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc--------ceeEEEEecceEEEEEEecceeeecccc Q lcl|Aclame:pro 159 LHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN--------ETKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) Q Consensus 159 ~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (492) ++||.|++|++++++++|++++|+|+++..+++++++|+|.... ...+++|++..+++|....+... T Consensus 152 ~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~----- 226 (511) T protein:vir:78 152 ELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGL----- 226 (511) T ss_pred EEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcc----- Confidence 99999999999999999999999999988899999999997542 23567899998888766544321 Q ss_pred ccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhh Q lcl|Aclame:pro 231 NLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRY 310 (492) Q Consensus 231 ~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 310 (492) ....+.....+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|.......++... .. T Consensus 227 ~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~-~~ 305 (511) T protein:vir:78 227 KLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQ-KE 305 (511) T ss_pred cccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchhhccc-cc Confidence 22345567789999999999999999999999999999999999999999999999999999999765444333221 11 Q ss_pred ccce-------------ecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 311 YGAI-------------KVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNL 377 (492) Q Consensus 311 ~~~~-------------~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~ 377 (492) .+++ ...++++++|++++.+.+++++++++|+++|+.+|++|+++++++++|+||+||+++++++.+ T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ 385 (511) T protein:vir:78 306 ANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQ 385 (511) T ss_pred ccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHH Confidence 1222 124568899999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC------CcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCH Q lcl|Aclame:pro 378 KADKLARKAKVAIQELLWFVFEHFDIK------GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDL 451 (492) Q Consensus 378 k~~~~~~~~~~~l~~~~~li~~~~~~~------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~ 451 (492) ||..+++.|+.+|++++++|+++++.. .++.+++++|++++|.|.++.++++++++|++|+||+++++|+++|+ T Consensus 386 ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~G~iS~et~l~~l~~v~d~ 465 (511) T protein:vir:78 386 RTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDP 465 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCH Confidence 999999999999999999999988643 34567899999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 452 QAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 452 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ++|++||++|+++..+..+...+...++..+++..++++++ T Consensus 466 ~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (511) T protein:vir:78 466 ELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDT 506 (511) T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCccCc Confidence 99999999998876555433322222222222222222111 No 20 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=100.00 E-value=4.9e-100 Score=565.03 Aligned_cols=470 Identities=18% Similarity=0.279 Sum_probs=390.5 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~ 79 (492) -.|..+...+-++|.+.+|..|.|...+..... ..+.|.++|.+|.. +++||+++++||+|+|+++++ T Consensus 8 ~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~-----------~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~ 76 (511) T protein:vir:96 8 ETDTDLRGNINYLFNDEANVVYTYDGTESDLLQ-----------NVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVE 76 (511) T ss_pred hhhhhhhhhhhhhhhhhhCCcccccchhhhhhc-----------CHHHHHHHHHHHHHhhhHHHHHHHHHhhccCccccc Confidence 455666667778999999999999876555332 24568888888864 678999999999999999876 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~ 158 (492) +... ....++++|+++||+++||++.++||+|+||++++++++..+.++.|++ |+++.++.++++.+++||+|| T Consensus 77 ~~~~-----~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~ 151 (511) T protein:vir:96 77 LTRR-----KEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAY 151 (511) T ss_pred cCcc-----cccccCcceeecchHHHHHHHHhhhhcccCceeecCchHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeE Confidence 5432 3455788999999999999999999999999999999999999888774 789999999999999999999 Q ss_pred EEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc--------ceeEEEEecceEEEEEEecceeeecccc Q lcl|Aclame:pro 159 LHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN--------ETKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) Q Consensus 159 ~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (492) ++||.|++|++++++++|++++|+|+++..+++++++|+|.... ...+++|++..+++|....+... T Consensus 152 ~~vy~d~dg~~~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~----- 226 (511) T protein:vir:96 152 ELMIRNQDDETRLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGL----- 226 (511) T ss_pred EEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcc----- Confidence 99999999999999999999999999988899999999997542 23567899998888766544321 Q ss_pred ccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhh Q lcl|Aclame:pro 231 NLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRY 310 (492) Q Consensus 231 ~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 310 (492) ....+.....+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|.......++... .. T Consensus 227 ~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~-~~ 305 (511) T protein:vir:96 227 KLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQ-KE 305 (511) T ss_pred cccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecCccCCchhhccc-cc Confidence 22345567789999999999999999999999999999999999999999999999999999999765444333221 11 Q ss_pred ccce-------------ecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 311 YGAI-------------KVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNL 377 (492) Q Consensus 311 ~~~~-------------~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~ 377 (492) .+++ ...++++++|++++.+.+++++++++|+++|+.+|++|+++++++++|+||+||+++++++.+ T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ 385 (511) T protein:vir:96 306 ANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQ 385 (511) T ss_pred ccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHH Confidence 1222 124568899999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC------CcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCH Q lcl|Aclame:pro 378 KADKLARKAKVAIQELLWFVFEHFDIK------GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDL 451 (492) Q Consensus 378 k~~~~~~~~~~~l~~~~~li~~~~~~~------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~ 451 (492) ||..+++.|+.+|++++++|+++++.. .++.+++++|++++|.|.++.++++++++|++|+||+++++|+++|+ T Consensus 386 ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~G~iS~et~l~~l~~v~d~ 465 (511) T protein:vir:96 386 RTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSLIEELKAYIDSGGKISQTTLMSLFSFFQDP 465 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCH Confidence 999999999999999999999988643 34567899999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 452 QAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 452 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ++|++||++|+++..+..+...+...++..+++..++++++ T Consensus 466 ~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (511) T protein:vir:96 466 ELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDT 506 (511) T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCccCc Confidence 99999999998876555433322222222222222222111 No 21 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=100.00 E-value=1.9e-99 Score=561.77 Aligned_cols=441 Identities=29% Similarity=0.496 Sum_probs=391.1 Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccc--------cccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 40 NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG--------AVDPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 40 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~--------~~~~~~~~~ri~~n~~~~ivd~~~ 111 (492) .+.+.+.++|.+++.+|++++++|.++++||+|+|+|++++.+..... .....++++|+++||+++||++.+ T Consensus 1 ~~~e~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~ 80 (471) T protein:vir:10 1 MEIEVIKKIISSQMVKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQKK 80 (471) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhhh Confidence 677888999999999999999999999999999999998765543221 122456889999999999999999 Q ss_pred HhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCC-CCceEEEEEcccceEEEecCCCCCc Q lcl|Aclame:pro 112 SYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDE-EGEFKLFRVPAEQGIPIWTDKEHEE 190 (492) Q Consensus 112 ~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~g~~~i~~~~p~~~~~i~d~~~~~~ 190 (492) +|++|+|+++++++++..+.++.|++|++++.+.++++.++++|+||+++|.++ +|++++++++|++++|+|+++..++ T Consensus 81 ~yl~G~p~~~~~~~~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~~~~~~~p~~~~~i~d~~~~~~ 160 (471) T protein:vir:10 81 AYALTYPPTFDVDDKKVNDMIVDVLGDDYERISKQLCVNAGNAGIAWLHVWKDASDNSFRYACVDSKEVIPIYSKSLDKK 160 (471) T ss_pred hhhcccCceeccCChHHHHHHHHHHhcCHHHHHHHHHHHHhhCCeEEEEEEeeCCCCeeEEEEEcccceEEEEcCCCCCc Confidence 999999999999999999999999999999999999999999999999999985 6999999999999999999998899 Q ss_pred eEEEEEeeeec------cceeEEEEecceEEEEEEecceeeeccc----------cccccccccceeccCCccceEeecC Q lcl|Aclame:pro 191 LEAFIRMYKLE------NETKVEYWDKVTVNYYVYENGSLIPDYS----------NNLENSKTHFSTGSWGKIPFIPFKN 254 (492) Q Consensus 191 ~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~iPvv~~~n 254 (492) +.+++|+|... ....+++|+...+++|....+....... ...........+|+||.||||+|+| T Consensus 161 ~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n 240 (471) T protein:vir:10 161 SIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPFKN 240 (471) T ss_pred eEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCCceeEEEecc Confidence 99999998753 2346789999999998877654433221 1233455667799999999999999 Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCC-----CCcceeeeccc Q lcl|Aclame:pro 255 NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSD-----NGGVDTIQVEV 329 (492) Q Consensus 255 n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~~ 329 (492) +..|+|+|+++++|||+||.++|++++.++++++|+++++|++.+..+++...++..+++.+.+ +++++|+++++ T Consensus 241 ~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ 320 (471) T protein:vir:10 241 NEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNYGGQDKQEFLEDLKRYKMIKMDNDGMGDQSGVTTIAIDI 320 (471) T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccchhHHHhhcCCeEEecCCCCccCccceEEeecC Confidence 9999999999999999999999999999999999999999998888888888888888887653 45899999999 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccee Q lcl|Aclame:pro 330 PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKD 409 (492) Q Consensus 330 ~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~ 409 (492) +.++++.++++|+++|+.+|++|+++++++ ||+||+||+++++++.+||+.+++.|+.+|++++++++++++.. +..+ T Consensus 321 ~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~-gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-d~~~ 398 (471) T protein:vir:10 321 PTEARNLILERTKKQIFISGQGVNPETDKL-GNSSGVALKFLYSLLELKAGNMETQFRSGYATLVKMILKHLGLS-DKLK 398 (471) T ss_pred ChHHHHHHHHHHHHHHHHHhCCcCCCcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCce Confidence 999999999999999999999999999888 57899999999999999999999999999999999999999875 5678 Q ss_pred eeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 410 VDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 410 i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) ++|+|++++|.|.++.++++++++|+||+||+++++|+++|+++|++||++|+++..+..+...+...+.+-+ T Consensus 399 i~i~f~~~~p~n~~e~~~~~~kl~g~iS~et~~~~~p~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~e~~ 471 (471) T protein:vir:10 399 IKQTWTRNSINNDTEMAQVVSTLATITSRENVAKSNPIVEDWQDELRLQKAEQEGRSEKLYDMEEVEHESEVE 471 (471) T ss_pred eEEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCccccC Confidence 9999999999999999999999999999999999999999999999999999988877766554444444333 No 22 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=100.00 E-value=3.7e-99 Score=560.21 Aligned_cols=444 Identities=27% Similarity=0.440 Sum_probs=387.8 Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc----ccccccccccccccccchHHHHHHHHHHhhh Q lcl|Aclame:pro 40 NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVD----ATGAVDPLKPDDRMITNFHANLVDQKVSYIV 115 (492) Q Consensus 40 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~----~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~ 115 (492) .+.+.+.++|.+++.+|+.++++|+++++||+|+|+|++++.... .....+..++++|+++||+++||++.++|++ T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~ 80 (470) T protein:vir:10 1 MELDALKKLIQNTSTSRNDLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYVA 80 (470) T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccchhcccccccccccccCCcccccchHHHHHHhhhhhee Confidence 667778899999999999999999999999999999998864332 1223445688999999999999999999999 Q ss_pred cCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEE Q lcl|Aclame:pro 116 GKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFI 195 (492) Q Consensus 116 g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i 195 (492) |+||+++++++...+.++.++++++.+.+.+++++++++|+||+++|+|++|++++++++|.+++|+|+++..+++.++| T Consensus 81 G~p~~~~~~d~~~~~~l~~~~~~~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~~~~~~~p~~~~~v~d~~~~~~~~a~i 160 (470) T protein:vir:10 81 SVFPDIDVGKDADNKKIIDVLGDDRALTLNGLLVDSSNAGRAWLHYWIDEDGNFRYGIIQPDQITPIYATTLDNKLLGIL 160 (470) T ss_pred ccceeeecCchHHHHHHHHHHhhhHHHHHHHHHHHHhhcCeeEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEE Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999 Q ss_pred Eeeeeccc------eeEEEEecceEEEEEEecceeeecc----------ccccccccccceeccCCccceEeecCccCCC Q lcl|Aclame:pro 196 RMYKLENE------TKVEYWDKVTVNYYVYENGSLIPDY----------SNNLENSKTHFSTGSWGKIPFIPFKNNDLEI 259 (492) Q Consensus 196 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~ 259 (492) |+|...+. ..+++|+...+.+|........... ............+|+||.||||+|+||+.|+ T Consensus 161 r~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~ 240 (470) T protein:vir:10 161 RSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSKNKYRL 240 (470) T ss_pred EEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeecCCCCC Confidence 99975432 3578999999999876655332211 1112334456778999999999999999999 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCC-----CCcceeeecccCHHHH Q lcl|Aclame:pro 260 SDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSD-----NGGVDTIQVEVPVENS 334 (492) Q Consensus 260 s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~~~~~~~ 334 (492) |+|+++++|||+||.++|++++.++++++|+++++|+..++.+++...++..+++.+++ +++|+|++++.+.+++ T Consensus 241 sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lt~~~~~~~~ 320 (470) T protein:vir:10 241 PELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGADLHQFMNDLRKYKSIKINNTGNGDNSGVDKLQIDIPVEAR 320 (470) T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCccccchhhhhhhhcCeEeccCCCCCcCceeEEEeecCChHHH Confidence 99999999999999999999999999999999999998888888888888888887754 4679999999999999 Q ss_pred HHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCcceeeeEE Q lcl|Aclame:pro 335 KKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-KGEHKDVDIS 413 (492) Q Consensus 335 ~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~-~~~~~~i~i~ 413 (492) +.++++|+++||.+|++|+++++.+ ||+||+||+++++++.+||+++++.|+++|++++++|+++++. ..++.+++++ T Consensus 321 ~~~~~~L~~~I~~~s~~p~~~~~~~-gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~~~~~d~~~i~i~ 399 (470) T protein:vir:10 321 DDALKITRKNIFLFGQGIDPANFES-SNASGVAIKMLYSHLELKAAKTQTYFEHAINELVRAIMRYLNFSDADKRHISQH 399 (470) T ss_pred HHHHHHHHHHHHHHhCCCCCCcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccceeeEE Confidence 9999999999999999999999887 5899999999999999999999999999999999999999985 4577899999 Q ss_pred eCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCC Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKE 490 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (492) |++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.....+......+ ...++++ T Consensus 400 f~~~~p~d~~e~~~~~~~~~g~iS~et~l~~~p~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~------~~~dde~ 470 (470) T protein:vir:10 400 WTRTKVEDSLTKAQIVSTVANYSSKEAVAKANPIVDDWQQELKDLAKDKEENDPYSNQADELNG------KGVNDEQ 470 (470) T ss_pred eccCCCCCHHHHHHHHHHHhccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccCC------CCCCCCC Confidence 9999999999999999999999999999999999999999999999999887665443322211 1111222 No 23 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=100.00 E-value=4.4e-98 Score=554.35 Aligned_cols=473 Identities=34% Similarity=0.571 Sum_probs=404.9 Q ss_pred CceeccCCCcHHHHHHHHhhcCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc---cccccc Q lcl|Aclame:pro 18 GNILYPSQPTQTEIFDAIVRTNN--KPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDAT---GAVDPL 92 (492) Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~---~~~~~~ 92 (492) --+.|+..++...-++.+..... ..+...++|.+++.+| ++++++++++||.|+|+|++++...... ...... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~--~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~ 78 (503) T protein:vir:59 1 MADIYPLGKTHTEELNEIIVESAKEIAEPDTTMIQKLIDEH--NPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDT 78 (503) T ss_pred CcccccCChhhHHhHHHhhhhhhhhccchhHHHHHHHHHhh--cHHHHHHHHHHhccccchhhccchhcccccccccccc Confidence 45678888877776666644333 3455677888888877 4689999999999999998887654332 234566 Q ss_pred ccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEE Q lcl|Aclame:pro 93 KPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLF 172 (492) Q Consensus 93 ~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~ 172 (492) ++++|+++||+++||++.++|++|+|+++++++++..+.|+.|++|+++..+.+++++++++|++|++||.|++|+++++ T Consensus 79 ~~~~ri~~n~~~~ivd~~~~yl~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~i~ 158 (503) T protein:vir:59 79 KTNNRTSHAWHKLFVDQKTQYLVGEPVTFTSDNKTLLEYVNELADDDFDDILNETVKNMSNKGIEYWHPFVDEEGEFDYV 158 (503) T ss_pred cccceeecchHHHHHHHHHhhhhcCCeeeccCcHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCeEEEEEeecCCCceEEE Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEcccceEEEecCCCCCceEEEEEeeeecc-----ceeEEEEecceEEEEEEecceeeeccc----cccccccccceecc Q lcl|Aclame:pro 173 RVPAEQGIPIWTDKEHEELEAFIRMYKLEN-----ETKVEYWDKVTVNYYVYENGSLIPDYS----NNLENSKTHFSTGS 243 (492) Q Consensus 173 ~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 243 (492) +++|++++|+|++...+++.++||+|.... ..++++|++..+++|............ ...........+|+ T Consensus 159 ~~~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (503) T protein:vir:59 159 IFPAEEMIVVYKDNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIG 238 (503) T ss_pred EEccceeEEEEeCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceecc Confidence 999999999999988899999999997643 246889999999998876654433211 11223345667899 Q ss_pred CCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCcce Q lcl|Aclame:pro 244 WGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVD 323 (492) Q Consensus 244 ~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 323 (492) ||.||||+|+||+.|+|+|+++++|||+||.++|++++.++++++|+++++|.++++.+++...++..+++.++++|+++ T Consensus 239 ~~~vPiv~~~nn~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (503) T protein:vir:59 239 WGRVPIIPFKNNEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNYDGENPKEFTANLRYHSVIKVSGDGGVD 318 (503) T ss_pred CCccceEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecCCccccchhhhhhhcccceeccCCCcce Confidence 99999999999999999999999999999999999999999999999999999988888888889999999999999999 Q ss_pred eeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 324 TIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI 403 (492) Q Consensus 324 ~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 403 (492) |++++++.++++.++++|+++|+.+|++|+++++.+++++||+||+++++++.+||+.+++.|+.+|++++++|+.+++. T Consensus 319 ~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~ 398 (503) T protein:vir:59 319 TLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETIGGGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRN 398 (503) T ss_pred eEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875 Q ss_pred CC-----cceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCC Q lcl|Aclame:pro 404 KG-----EHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGG 476 (492) Q Consensus 404 ~~-----~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~ 476 (492) .+ +..+++++|++++|.|.++.+++++++ +|++|+||+++++|+++|+++|++||++|+++..+......+.. T Consensus 399 ~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~ 478 (503) T protein:vir:59 399 TGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPFVQDPEEELARIEEEMNQYAEMQGNLLDDE 478 (503) T ss_pred ccCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhccccCcc Confidence 43 345789999999999999999999998 58999999999999999999999999999987776666554433 Q ss_pred CCCCCcC-CCCCCCCCC Q lcl|Aclame:pro 477 ADSAQQQ-ERSNNKESE 492 (492) Q Consensus 477 ~~~~~~~-~~~~~~~~e 492 (492) .....++ +.+...+++ T Consensus 479 ~~~~~~~~~~~~~~~~~ 495 (503) T protein:vir:59 479 GGDDDLEEDDPNAGAAE 495 (503) T ss_pred CCCCCCCcCCCCCCccc Confidence 3222222 122222222 No 24 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=100.00 E-value=1.6e-98 Score=556.72 Aligned_cols=427 Identities=29% Similarity=0.492 Sum_probs=381.3 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC Q lcl|Aclame:pro 44 TLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) Q Consensus 44 ~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 123 (492) +..+.|.+++++|+.+++||+++++||+|+|+|++++............++++|+++||+++||++.++|++|+|+++++ T Consensus 1 l~~~~i~~~i~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~~ 80 (451) T protein:vir:10 1 MELEKIRAIISADAARRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYPVLFDI 80 (451) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheecccceeec Confidence 66788999999999999999999999999999999887777776777889999999999999999999999999999987 Q ss_pred Cc-hhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCC--------CceEEEEEcccceEEEecCCCCCceEEE Q lcl|Aclame:pro 124 TD-DEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEE--------GEFKLFRVPAEQGIPIWTDKEHEELEAF 194 (492) Q Consensus 124 ~d-~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~--------g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 194 (492) ++ ++..+.|+.|++|+++..+.+++++++++|+||+++|.+++ |.+++++++|++++|+|+++..+++.++ T Consensus 81 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~vydd~~~~~~~~~ 160 (451) T protein:vir:10 81 DNNKELNEKVTDVLGNEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPIYRNGIERELEAV 160 (451) T ss_pred CCcHHHHHHHHHHhccCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEEEcCCCCCceEEE Confidence 55 56788899999999999999999999999999999999975 7889999999999999999999999999 Q ss_pred EEeeeeccc----------eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHH Q lcl|Aclame:pro 195 IRMYKLENE----------TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFM 264 (492) Q Consensus 195 i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~ 264 (492) ||+|..... .++++|++..++.|....... ..........+|+||.||||+|.||+.|.|+|++ T Consensus 161 ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~vPvv~~~nn~~~~~d~e~ 234 (451) T protein:vir:10 161 IRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSC------CGSQIEHITVQHRFNSVPFVEFSNNIKKQSDLSK 234 (451) T ss_pred EEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCc------cccccccccccCCCCeeeEEEeccCCCCCCchhh Confidence 999865332 357788888888776544322 2233455677899999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecC-----CCCcceeeecccCHHHHHHHHH Q lcl|Aclame:pro 265 YKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVS-----DNGGVDTIQVEVPVENSKKYLD 339 (492) Q Consensus 265 v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~d~~~l~~~~~~~~~~~~i~ 339 (492) |++|||+||.++|++++.++++++|+++++|+++++..++...++..+++.+. ++|+++|++++.+.++++.+++ T Consensus 235 v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 314 (451) T protein:vir:10 235 YKKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDTSEFLKELKRYKTIKTETDSEGDSGGLKTMQIEIPTEARKIILE 314 (451) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchhhHHHHhhCCeEEecCcCCccCCcceEEeecCCHHHHHHHHH Confidence 99999999999999999999999999999999888888888888888877764 4578999999999999999999 Q ss_pred HHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCC Q lcl|Aclame:pro 340 ELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKV 419 (492) Q Consensus 340 ~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p 419 (492) +|.++|+.+|++|+++++++ ||+||+||+++++++.+||+.+++.|+++|++++++|+++++.. ++.+++++|++++| T Consensus 315 ~l~~~I~~~s~~p~~~~~~~-gn~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~-d~~~i~i~f~~~~p 392 (451) T protein:vir:10 315 ILKKQIYESGQGLQQDTENF-GNASGVALKFFYRKLELKSGLLETEFRTSFDKLIKAILYFLGVT-DYKKIQQTYTRNMM 392 (451) T ss_pred HHHHHHHHHhCccccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CccceeEEecCCCC Confidence 99999999999999999888 58999999999999999999999999999999999999999864 57889999999999 Q ss_pred cCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCC Q lcl|Aclame:pro 420 ANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGAD 478 (492) Q Consensus 420 ~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 478 (492) .|.++.++++++++|++|+||+++++|+++|+++|++++++|+++..++.....++-.+ T Consensus 393 ~n~~e~~~~~~kl~g~iS~et~~~~~p~v~d~~~e~~~~~ee~~~~~~~~~~~~~~~~~ 451 (451) T protein:vir:10 393 SNDLEDADIATKSVGIIPTKIILRHHPWVDDVEEAEKLYLEEKKIQASKVSDDYNNFTE 451 (451) T ss_pred CCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCC Confidence 99999999999999999999999999999999999999998887665554443333222 No 25 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=100.00 E-value=1.5e-97 Score=551.43 Aligned_cols=464 Identities=18% Similarity=0.211 Sum_probs=379.6 Q ss_pred ChhhhHHHHHH-----HHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCC Q lcl|Aclame:pro 1 MQFIQLISQVA-----QALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRP 74 (492) Q Consensus 1 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~ 74 (492) -|-+-..|-+. .||++++|..|.+...+.. .....++|.++|.+|.. +++||+++.+||+|+| T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~ 70 (501) T protein:vir:27 2 EQTLFTDSTGQDLVLNLRFHRESRIRYRADNLEEL-----------MVNNWELLKNFINHHKLRQAPRIQELLDYARGEN 70 (501) T ss_pred CceeEEeccchhhhhhcccChhHHHhhcccccccc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 22222233333 4999999999988642221 22334678999999875 5789999999999986 Q ss_pred c-cccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchh----HHHHHHHHH-hccHHHHHHHHH Q lcl|Aclame:pro 75 D-IVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDE----VVKRIDEVL-GNRFDDKLHSVL 148 (492) Q Consensus 75 ~-i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~----~~~~l~~~~-~n~~~~~~~~~~ 148 (492) + +..+.. ..+..++++|+++||+++||++.++|++|+|++++++++. ..+.++.|+ .|+++..+.+++ T Consensus 71 ~~i~~~~~------~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~~~~~l~~~~~~n~~~~~~~~~~ 144 (501) T protein:vir:27 71 HDVLQFGR------RKDREMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDNDNNSQNDDTIKRIGRINDIDSHNRTLI 144 (501) T ss_pred ccccccCc------cCccccccceeccchHHHHHHHHhhhhcccCeeEecCCccchHHHHHHHHHHHHhcChhHHHHHHH Confidence 4 443332 2345678899999999999999999999999999987643 455566555 589999999999 Q ss_pred HHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc----ceeEEEEecceEEEEEEeccee Q lcl|Aclame:pro 149 TGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN----ETKVEYWDKVTVNYYVYENGSL 224 (492) Q Consensus 149 ~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 224 (492) ++++++|+||++||.+++|++++++++|++++|+||++..++++++||+|..+. ...+++|++..+++|.... T Consensus 145 ~~~~~~G~a~~~vy~ded~~~~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~--- 221 (501) T protein:vir:27 145 RDLSQTGRAYEVIYRNEYDETRIKRLNPLETFVIYDNSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNEHIYTLDASD--- 221 (501) T ss_pred HHHhhCCeEEEEEEeCCCCceEEEEEccceeEEEecCCCCCceEEEEEEEEeeecCCcEEEEEEEeCCeEEEEEeCC--- Confidence 999999999999999999999999999999999999988899999999998643 3467889988887765432 Q ss_pred eeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhh Q lcl|Aclame:pro 225 IPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEF 304 (492) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~ 304 (492) +++.....+|+||.||||+|+||+.|+|+|+++++|||+||.++|++++.++++++|+++++|...+..++. T Consensus 222 --------~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~ 293 (501) T protein:vir:27 222 --------DFNEISVTTHAFGTVPITEFLNNVDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQ 293 (501) T ss_pred --------ceeeccccccCCCcccEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCcccc Confidence 345566789999999999999999999999999999999999999999999999999999999877766666 Q ss_pred HHhhhhccceecC---------CCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHH Q lcl|Aclame:pro 305 KRLLRYYGAIKVS---------DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNL 375 (492) Q Consensus 305 ~~~~~~~~~~~~~---------~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l 375 (492) ...++..+++.+. ++++++|++++.+.++++.++++|+++|+.+|++|+++++++++|+||+||+++++++ T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l 373 (501) T protein:vir:27 294 ASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPDMSDTNFSGNTSGEALKYKLFGL 373 (501) T ss_pred hhhhhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCCcccCccccccCchHHHHHHHHHHH Confidence 6666666666543 3457899999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCC Q lcl|Aclame:pro 376 NLKADKLARKAKVAIQELLWFVFEHFDIKG-----EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVED 450 (492) Q Consensus 376 ~~k~~~~~~~~~~~l~~~~~li~~~~~~~~-----~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D 450 (492) .+||..+++.|+.+|++++++|+++++..+ ++.+++++|++++|.|.++.++++++++|++|+||+++++|+++| T Consensus 374 ~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v~f~~~~p~n~~e~ad~~~kl~g~iS~et~l~~l~~v~D 453 (501) T protein:vir:27 374 DQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILTGLGGQVSQETALSLSGLVES 453 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHhCCCCCC Confidence 999999999999999999999999987543 456789999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHh--hccccCCCCCCC-CcCCCCCCCCCC Q lcl|Aclame:pro 451 LQAELERIEQEQTEYNKQ--LPNLDDGGADSA-QQQERSNNKESE 492 (492) Q Consensus 451 ~~~E~~ri~~E~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~e 492 (492) |++|++||++|+++...+ ...+.+...... ++++..+++..+ T Consensus 454 ~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~~~~d~~e~ 498 (501) T protein:vir:27 454 PNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVKETHTDDFER 498 (501) T ss_pred HHHHHHHHHHHHHhhhHhhhcCccccccccccCCCCCCccccccc Confidence 999999999998754322 222222212222 222222222222 No 26 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=100.00 E-value=1e-96 Score=546.89 Aligned_cols=452 Identities=15% Similarity=0.170 Sum_probs=374.1 Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 28 QTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLV 107 (492) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 107 (492) +.=++..-+. .+..+...++|.++|++|..+.+||+++++||+|+|+|++++.. ...++++|+++||+++|| T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~-------~~~~~~~ki~~n~~~~Iv 72 (499) T protein:vir:10 1 MAVVIDKDLL-DDVNEPNIEAINYAIRELQNRKKRLDKLSDYYNGKQEIEKHEFD-------NATVEAANVMVNHAKYIT 72 (499) T ss_pred CccchhhhHH-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcCCcC-------cCCCCcceeecchHHHHH Confidence 1111111111 12233446789999999999999999999999999999877543 345788999999999999 Q ss_pred HHHHHhhhcCCeeecCCchhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc-----------------e Q lcl|Aclame:pro 108 DQKVSYIVGKPIAFKHTDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGE-----------------F 169 (492) Q Consensus 108 d~~~~~l~g~~~~~~~~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~-----------------~ 169 (492) ++.++||||+|+++++++++..+.++.++ .|+++.++.++++.++++|+||++||.+++|. + T Consensus 73 ~~~~~~l~g~p~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~ 152 (499) T protein:vir:10 73 DMNVGFMTGNPVKYVAEKGKNIDDILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTEL 152 (499) T ss_pred HHHhhhhcccCceeecCChhHHHHHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccce Confidence 99999999999999999888877777766 57899999999999999999999999999873 5 Q ss_pred EEEEEcccceEEEecCCCCCceEEEEEeeeecc------ceeEEEEecceEEEEEEecceeeeccccccccccccceecc Q lcl|Aclame:pro 170 KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN------ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGS 243 (492) Q Consensus 170 ~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (492) +++.++|++++++|++...+.+.+++|+|...+ ..++++|++..+++|........ ..++......+|+ T Consensus 153 ~~~~v~p~~~~~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~ 227 (499) T protein:vir:10 153 KIEVIDPRATVVVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEV-----SANDPIVYDGENL 227 (499) T ss_pred EEEEEcccceEEEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccc-----cCcceecccccCC Confidence 789999999999999998899999999987643 24678999999998876654322 2234566778999 Q ss_pred CCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceec--CCCCc Q lcl|Aclame:pro 244 WGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKV--SDNGG 321 (492) Q Consensus 244 ~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~d 321 (492) ||.||||+|.|++.|+|+|+++++|||+||.++|++++.++++++|+++++|.+.+...+....++.+.++.+ +++++ T Consensus 228 ~g~vPvv~~~n~~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~d 307 (499) T protein:vir:10 228 FGAVPIIEFRNNEERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFGLGDDKDDIQRLKRGAIEAPPREEGAD 307 (499) T ss_pred CCccceEEecCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccccccchhhhhhhcceeccCCCCCCc Confidence 9999999999999999999999999999999999999999999999999999877665655555555555554 46788 Q ss_pred ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 322 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF 401 (492) Q Consensus 322 ~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 401 (492) ++|++++++.++++.++++|.+.|+.+|++|+++++.+++++||+||+++++++.+|+..+++.|+.+|++++++|++++ T Consensus 308 ~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~ 387 (499) T protein:vir:10 308 IEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEKFMGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIV 387 (499) T ss_pred ceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998 Q ss_pred ccCC---cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhcccc-CC-- Q lcl|Aclame:pro 402 DIKG---EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLD-DG-- 475 (492) Q Consensus 402 ~~~~---~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~-~~-- 475 (492) +..+ ++.+++++|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.....+... +. T Consensus 388 ~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 467 (499) T protein:vir:10 388 NIKGANDDASGCKISLVANIPSNLSDVVNNVKNADGIIPRKYTYSWLPDVDNPQDVIDEMNQQDAETIKKNQEALRGQDP 467 (499) T ss_pred hccCCccccccceEEeCCCCCCCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCC Confidence 7543 56789999999999999999999999999999999999999999999999999999876543322211 11 Q ss_pred ---CCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 476 ---GADSAQQQERSNNKESE 492 (492) Q Consensus 476 ---~~~~~~~~~~~~~~~~e 492 (492) +.+..++++++++.+.. T Consensus 468 ~~~~~~~~~~~~~~~~~~~~ 487 (499) T protein:vir:10 468 DRLELEDKQDDSSENDKEAG 487 (499) T ss_pred CCCCCCCCCcccCCCCCCCc Confidence 11111111111111111 No 27 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=100.00 E-value=7.7e-97 Score=547.51 Aligned_cols=442 Identities=20% Similarity=0.244 Sum_probs=375.4 Q ss_pred HhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc Q lcl|Aclame:pro 14 LIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLK 93 (492) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~ 93 (492) +.=..|..|.|++ +.+...++|.+++++|..+++|++++++||+|+|+|++++.. ...+ T Consensus 1 ~~~~~~~~~~~p~--------------d~~~~~~~l~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~~~~-------~~~~ 59 (453) T protein:vir:39 1 MKYKPPKLMTFPK--------------DEPITNEVVTKFMEKHRLEVARYEYLKNMYRGIMAIDAEPTK-------DLWK 59 (453) T ss_pred CeecCCcceEcCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhcCCCc-------cccC Confidence 2234444554444 445667889999999999999999999999999999877643 3457 Q ss_pred cccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEE Q lcl|Aclame:pro 94 PDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLF 172 (492) Q Consensus 94 ~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~ 172 (492) +++|+++||+++||++.++|++|+|+++++++++..+.++.++ .|+++..+.+++++++++|+||++||.+++|+++++ T Consensus 60 ~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~ 139 (453) T protein:vir:39 60 PDNRLTVNFTKYIVDTFTGYFNGIPVKKSHSDKETLSKLQEFDNLNDMEDEESELAKMACIYGRAFELLYQNEETQTNVI 139 (453) T ss_pred ccceeecchHHHHHHHHhhhhcccCceeccCChHHHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEEEEecCCCceEEE Confidence 8899999999999999999999999999999999888888766 589999999999999999999999999999999999 Q ss_pred EEcccceEEEecCCCCCceEEEEEeeeecc-ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEe Q lcl|Aclame:pro 173 RVPAEQGIPIWTDKEHEELEAFIRMYKLEN-ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIP 251 (492) Q Consensus 173 ~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~ 251 (492) +++|++++|+|++...+++.+++++|...+ ...+++|++..+++|....+ .+......+|+||.||||+ T Consensus 140 ~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~~~~yt~~~i~~~~~~~~----------~~~~~~~~~~~~g~vPvv~ 209 (453) T protein:vir:39 140 YNTPENMFMVYDDTIKQEPLFAVRYGYDDDYKLYGEVYTKETTYALNGTMG----------FYNMTEQAPNPFDDLPVVE 209 (453) T ss_pred EEcccceEEEecCCCCCeEEEEEEEEEeCCeEEEEEEEeCCeEEEEEecCC----------ceeeecccccCCCceeEEE Confidence 999999999999988889999999986544 45688999999888764332 2344566789999999999 Q ss_pred ecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceec------CCCCcceee Q lcl|Aclame:pro 252 FKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKV------SDNGGVDTI 325 (492) Q Consensus 252 ~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~d~~~l 325 (492) |+|+++|+|+|+++++|||+||+++|++++.++++++|+++++|.+.+. +....++..+++.+ +++++++|+ T Consensus 210 ~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (453) T protein:vir:39 210 FYFNEERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAVEE--EDLKNIRSNRVINYYGESSEAKNVDVKFL 287 (453) T ss_pred ecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCCCc--hhhhhhhhcceeeecCCCCCCCCCceeEE Confidence 9999999999999999999999999999999999999999999975432 22233444445443 357889999 Q ss_pred ecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC Q lcl|Aclame:pro 326 QVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG 405 (492) Q Consensus 326 ~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~ 405 (492) +++.+.+++++++++|+++|+.+|++|+++++.+ ||+||+||++++++|..||+++++.|+.+|++++++|+++++..+ T Consensus 288 t~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~ 366 (453) T protein:vir:39 288 EKPDSDSQTENLLDRLTKLIFQTTMVANISDESF-GSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVS 366 (453) T ss_pred eecCCHHHHHHHHHHHHHHHHHHhCCcccccccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 9999999999999999999999999999999888 478999999999999999999999999999999999999887544 Q ss_pred ---cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 406 ---EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 406 ---~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) +..+++|+|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++..+.......+..+.+.+ T Consensus 367 ~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl~g~is~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 446 (453) T protein:vir:39 367 NKEAWKDIEYTFTRNEPKDIKEQAETANILMGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTV 446 (453) T ss_pred CccccccceEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC Confidence 56788999999999999999999999999999999999999999999999999999987665544444443333333 Q ss_pred CCCCCCC Q lcl|Aclame:pro 483 QERSNNK 489 (492) Q Consensus 483 ~~~~~~~ 489 (492) .+..+.| T Consensus 447 ~~~~~~e 453 (453) T protein:vir:39 447 VPETNEE 453 (453) T ss_pred CCCcCCC Confidence 3222222 No 28 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=100.00 E-value=1.8e-96 Score=545.45 Aligned_cols=459 Identities=39% Similarity=0.695 Sum_probs=391.4 Q ss_pred CceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccc--cccccccc Q lcl|Aclame:pro 18 GNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG--AVDPLKPD 95 (492) Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~--~~~~~~~~ 95 (492) -=+.|.+.. ..++. ....+..+.+.++|.+++.+| +.++++++++||+|+|+|++++....... .....+++ T Consensus 1 ~~~~~~~~~---~~~~~-~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~ 74 (479) T protein:vir:79 1 MLNIYISET---DLIKV-QLKKESTINLVKVIEHYILKH--RPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVN 74 (479) T ss_pred CCCceeccc---ceEee-ccccCChhHHHHHHHHHHhhh--hHHHHHHHHHHhccCCcccccccccccccccccccccCc Confidence 223444443 22211 123334455566676666655 67899999999999999999876654433 34556899 Q ss_pred cccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 96 DRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVP 175 (492) Q Consensus 96 ~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~ 175 (492) +|+++||+++||++.++|++|+|++++++++...+.|+.|.+|++++.+.++++.++++|+||++||.+++|++++++++ T Consensus 75 ~ki~~~~~~~Ivd~~~~~l~g~p~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~~~~ 154 (479) T protein:vir:79 75 NKAINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLGEEFDDTITELYLNASNKGVEWLHPYINRKGEFKYVIIP 154 (479) T ss_pred ceeecchHHHHHHHHHhhhhcCCceeccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccceEEEecCCCCCceEEEEEeeeecc-----ceeEEEEecceEEEEEEecceeeecc---------cccccccccccee Q lcl|Aclame:pro 176 AEQGIPIWTDKEHEELEAFIRMYKLEN-----ETKVEYWDKVTVNYYVYENGSLIPDY---------SNNLENSKTHFST 241 (492) Q Consensus 176 p~~~~~i~d~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 241 (492) |++++|+||++..+++.+++|+|...+ ..++++|++..+.+|....+...... .....+......+ T Consensus 155 p~~~~~v~d~~~~~~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (479) T protein:vir:79 155 AEEAIPIWDSKRQRELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKE 234 (479) T ss_pred cceeEEEEeCCCCCceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccc Confidence 999999999998899999999987543 24688999999999887665443221 1122334556788 Q ss_pred ccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCc Q lcl|Aclame:pro 242 GSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGG 321 (492) Q Consensus 242 ~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 321 (492) |+||.||||+|+||+.|+|+|+++++|+|+||.++|++++.++++++|+++++|.+++..+++...++..+++.++++|+ T Consensus 235 ~~~~~vPvv~~~nn~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 314 (479) T protein:vir:79 235 QGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIRYYKSIKVDGGGG 314 (479) T ss_pred cCCCcccEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccccchhhhhhccceecCCCCc Confidence 99999999999999999999999999999999999999999999999999999998887788888888889999999999 Q ss_pred ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 322 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF 401 (492) Q Consensus 322 ~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 401 (492) ++|++++.+.+++++++++|+++|+.+|++|+++++.+ |++||+||+++++++.+||..+++.|+.+|+++++++++++ T Consensus 315 ~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 393 (479) T protein:vir:79 315 VDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT-GDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYL 393 (479) T ss_pred ceEEeccCCHHHHHHHHHHHHHHHHHHhCccccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999998877 57899999999999999999999999999999999999988 Q ss_pred ccCC----cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCC Q lcl|Aclame:pro 402 DIKG----EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGA 477 (492) Q Consensus 402 ~~~~----~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~ 477 (492) +..+ +..+++|+|++++|.|.++.|+++++++|++|+||+++++|+++|+++|++||++|+++..+..+...+... T Consensus 394 ~~~~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl~g~iS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~ 473 (479) T protein:vir:79 394 KISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKSTGIVSDETIVSNHPWVEDVNDELERLKKQEDTQKEYDDLIPNNQD 473 (479) T ss_pred hccCCCccccccceEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhccCcccC Confidence 7653 567899999999999999999999999999999999999999999999999999998876655554433222 Q ss_pred CCCCcC Q lcl|Aclame:pro 478 DSAQQQ 483 (492) Q Consensus 478 ~~~~~~ 483 (492) +..++. T Consensus 474 ~~~~e~ 479 (479) T protein:vir:79 474 GVIDET 479 (479) T ss_pred CCcCcC Confidence 222222 No 29 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=100.00 E-value=1.4e-96 Score=546.13 Aligned_cols=464 Identities=19% Similarity=0.221 Sum_probs=378.0 Q ss_pred ChhhhH--HHHH-----HHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcC Q lcl|Aclame:pro 1 MQFIQL--ISQV-----AQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQ 72 (492) Q Consensus 1 ~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G 72 (492) |-...+ .|-+ -.||++.+|..|.+...+.. .....++|.++|++|.. +++||+++.+||+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~i~~h~~~~~~rl~~l~~yY~g 69 (502) T protein:vir:48 1 MMEQTLFTDSTGQDLVLNLRFHRESRIRYRADNLEEL-----------MVNNWELLKNFINHHKLRQAPRIQELLDYARG 69 (502) T ss_pred CceeEEEEecchhHHHhhcccChhHHhhhcccchhhh-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 221111 1222 34999999999977542211 22234678999999975 57899999999999 Q ss_pred CC-ccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchh----HHHHHHHHH-hccHHHHHHH Q lcl|Aclame:pro 73 RP-DIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDE----VVKRIDEVL-GNRFDDKLHS 146 (492) Q Consensus 73 ~~-~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~----~~~~l~~~~-~n~~~~~~~~ 146 (492) +| +|.++.. ..+..++++|+++||+++||++.++||+|+|+++++++++ ..+.|+.|+ .|+|+..+.+ T Consensus 70 ~~~~i~~~~~------~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~~~~~l~~~~~~N~~~~~~~~ 143 (502) T protein:vir:48 70 ENHDVLKSGR------RKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDNEDNSQNDDAIKRIGRINDIDTHNRN 143 (502) T ss_pred CCcccccccc------ccccccccceeecchHHHHHHHHhhhhcccCeeEecCCccchhHHHHHHHHHHhhcCHhHHHHH Confidence 85 5654432 2345678899999999999999999999999999987643 455666655 5899999999 Q ss_pred HHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc----ceeEEEEecceEEEEEEecc Q lcl|Aclame:pro 147 VLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN----ETKVEYWDKVTVNYYVYENG 222 (492) Q Consensus 147 ~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 222 (492) +++++++||+||+++|.+++|++++++++|++++|+|+++..+++++++|+|.... ...+++|++..+++|.... T Consensus 144 ~~~~~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~vydd~~~~~~~~~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~- 222 (502) T protein:vir:48 144 LIRDLSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQNAKDVVEIYTNQHIYTLDASD- 222 (502) T ss_pred HHHHHhhcCeEEEEEEeCCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEEeecCCcEEEEEEEeCCeEEEEEeCC- Confidence 99999999999999999999999999999999999999988899999999987533 2457889988887765322 Q ss_pred eeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccch Q lcl|Aclame:pro 223 SLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELP 302 (492) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~ 302 (492) +++.....+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|......+ T Consensus 223 ----------~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~ 292 (502) T protein:vir:48 223 ----------SFNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPQG 292 (502) T ss_pred ----------ceeeccceecCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCcccccc Confidence 3456667899999999999999999999999999999999999999999999999999999998766656 Q ss_pred hhHHhhhhccceecC---------CCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHH Q lcl|Aclame:pro 303 EFKRLLRYYGAIKVS---------DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYT 373 (492) Q Consensus 303 ~~~~~~~~~~~~~~~---------~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~ 373 (492) +....++..+++.+. ++++++|++++++.++++.++++|+++|+.+|++|+++++++++|+||+||+++++ T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~ 372 (502) T protein:vir:48 293 MQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTPDMSDNHFSGNASGEALKYKLF 372 (502) T ss_pred cchhhhhhcceeeccccccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCCCcCccccccCchHHHHHHHHH Confidence 666566666665542 45689999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCC Q lcl|Aclame:pro 374 NLNLKADKLARKAKVAIQELLWFVFEHFDIKG-----EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFV 448 (492) Q Consensus 374 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~-----~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v 448 (492) +|.+|+..+++.|+.+|++++++|+++++..+ +..+++++|++++|+|.++.++++++++|+||+||+++++|++ T Consensus 373 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl~g~iS~et~l~~l~~v 452 (502) T protein:vir:48 373 GLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLKITFTPNLPKSLYEQVSILNDLGGQVSQETALSLSGLV 452 (502) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCcHHHHHHhCCCC Confidence 99999999999999999999999999987543 4567899999999999999999999999999999999999999 Q ss_pred CCHHHHHHHHHHHHHHHHHhhcc--ccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 449 EDLQAELERIEQEQTEYNKQLPN--LDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 449 ~D~~~E~~ri~~E~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e 492 (492) +|+++|++||++|+++...+... ..+...+...+......++.| T Consensus 453 ~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~~~ 498 (502) T protein:vir:48 453 ENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKETHTDDFE 498 (502) T ss_pred CCHHHHHHHHHHHHHhhhhhcccccccccccccCCCccCCCCcCcC Confidence 99999999999998753322221 112222222222222222222 No 30 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=100.00 E-value=2.2e-96 Score=544.96 Aligned_cols=442 Identities=21% Similarity=0.265 Sum_probs=377.1 Q ss_pred ccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 22 YPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITN 101 (492) Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n 101 (492) -+|-|. .++....+.+...+.|.++|++|..+++||+++++||+|+|+|++++.+ ...++++|+++| T Consensus 1 ~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~-------~~~~~~~ki~~n 67 (452) T protein:vir:36 1 MKYKPP------KLMTFSKDEPITVEVVTKFMEKHKLEVARYEYLKNMYLGIMAIDDEPAK-------DSWKPDNRLAVN 67 (452) T ss_pred CcccCc------eeEEcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCccc-------cccCccceeecc Confidence 333331 2233344455567889999999999999999999999999999877643 345788999999 Q ss_pred hHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceE Q lcl|Aclame:pro 102 FHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGI 180 (492) Q Consensus 102 ~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~ 180 (492) |+++||++.++||+|+|++++++++..++.|+.|++ |+++.++.+++++++++|+||+++|.|++|.+++++++|++++ T Consensus 68 ~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~ 147 (452) T protein:vir:36 68 FTKYIVDTFTGYFNGIPVKKSHSDKEILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDEDTQTNVVYNSPENMF 147 (452) T ss_pred hHHHHHHHHhhhhcccCceeecCChhHHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecCCCeeEEEEEcccceE Confidence 999999999999999999999999999999988775 7999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCceEEEEEeeeecc-ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCC Q lcl|Aclame:pro 181 PIWTDKEHEELEAFIRMYKLEN-ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEI 259 (492) Q Consensus 181 ~i~d~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~ 259 (492) |+||++..+++.+++++|...+ ...+++|++..+++|....+ ++......+|+||.||||+|+|++.|+ T Consensus 148 ~v~d~~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~----------~~~~~~~~~~~~g~iPvv~~~n~~~g~ 217 (452) T protein:vir:36 148 MVYDDTVKQEPLFAVRYGVDEDKKLQGEVYTLLETIKISGEND----------EISFGEGTYNPYPDLPVVEFYFNEERM 217 (452) T ss_pred EEEcCCCCCceEEEEEEEEecCceEEEEEEecCeEEEEEEcCC----------ceEEecceeccCCcccEEEecCCCCCC Confidence 9999988889999999987554 45788999998887764432 345566789999999999999999999 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCC-----CcceeeecccCHHHH Q lcl|Aclame:pro 260 SDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDN-----GGVDTIQVEVPVENS 334 (492) Q Consensus 260 s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~ 334 (492) |+|+++++|+|+||+++|++++.++++++|+++++|...+. +....++.++++.+..+ ++++|++++++.+++ T Consensus 218 sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 295 (452) T protein:vir:36 218 SIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAVEE--EDLKNIRSNRVINYYADGEGKNVDVKFLEKPDSDSQT 295 (452) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCcCc--hhhhhhhhcceEEecCCCCccCCcceeEeecCCHHHH Confidence 99999999999999999999999999999999999976543 34444555667766543 478999999999999 Q ss_pred HHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---cceeee Q lcl|Aclame:pro 335 KKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG---EHKDVD 411 (492) Q Consensus 335 ~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~---~~~~i~ 411 (492) +.++++|+++|+.+|++|+++++++| |+||+||++++++|.+||+.+++.|+.+|++++++|+++++..+ ++.+++ T Consensus 296 ~~~~~~l~~~I~~~s~~p~~~~~~~g-n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~ 374 (452) T protein:vir:36 296 ENLLDRLTKLIFQTTMVANISDESFG-SSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVSNKDSWKDIE 374 (452) T ss_pred HHHHHHHHHHHHHHhCccccCccccc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccce Confidence 99999999999999999999998884 78999999999999999999999999999999999999886543 567899 Q ss_pred EEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 412 ISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 412 i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) |+|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++..+.......+..+...+.++.++| T Consensus 375 i~f~~~~p~d~~~~a~~~~k~~g~iS~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e 452 (452) T protein:vir:36 375 YTFTRNEPKDIKEQAETANILMGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVSETNEE 452 (452) T ss_pred EEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCcccccCccccCC Confidence 999999999999999999999999999999999999999999999999999876655444333333322222222222 No 31 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=100.00 E-value=1.7e-96 Score=545.68 Aligned_cols=464 Identities=19% Similarity=0.221 Sum_probs=377.7 Q ss_pred ChhhhHHHHH---HHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCC-c Q lcl|Aclame:pro 1 MQFIQLISQV---AQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRP-D 75 (492) Q Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~-~ 75 (492) --|..-+-|. -.|+++.+|..|.+...+.. .....++|.++|.+|.. +.++|+++.+||.|+| . T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~~ 72 (501) T protein:vir:96 4 TLFTDSTGQERVLNLRFHRESRIRYRADNLEEL-----------MVNNWELLKNFINHHKLRQAPRIQELLDYARGENHD 72 (501) T ss_pred eeeeecccceeccccccchhHHhhhcccccccc-----------cCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc Confidence 1122222222 45899999999977643322 22335679999999875 5689999999999985 5 Q ss_pred cccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCch----hHHHHHHHHH-hccHHHHHHHHHHH Q lcl|Aclame:pro 76 IVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD----EVVKRIDEVL-GNRFDDKLHSVLTG 150 (492) Q Consensus 76 i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~----~~~~~l~~~~-~n~~~~~~~~~~~~ 150 (492) ++.+... .+..++++|+++||+++||++.++|++|+|++++++++ ..++.++.|+ .|+|+..+.+++++ T Consensus 73 i~~~~~~------~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~ 146 (501) T protein:vir:96 73 VLKSGRR------KDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDNDDNSQNDDAIKRIGRINDLDSLNRTLIRD 146 (501) T ss_pred ccCcccc------CccccccceeecchHHHHHHHHhhhhcccCeeEeeCCccchhHHHHHHHHHHHhcCHHHHHHHHHHH Confidence 5544322 34567889999999999999999999999999988653 4556666655 58999999999999 Q ss_pred HHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc----ceeEEEEecceEEEEEEecceeee Q lcl|Aclame:pro 151 ASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN----ETKVEYWDKVTVNYYVYENGSLIP 226 (492) Q Consensus 151 ~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 226 (492) +++||+||+++|.+++|.+++++++|++++|+||++..+++.++|++|.... ...+++|++..+++|.... T Consensus 147 ~~~~G~a~~~v~~dedg~~~i~~~~p~~~~~v~d~~~~~~~~~~v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~----- 221 (501) T protein:vir:96 147 LSQTGRAYEVIYRSEYDETRIKRLSPLETFVIYDNSLEDNSIAAVRYYNRGTLQSAKDVVEIYTDEHIYTLDASD----- 221 (501) T ss_pred HhhcCeEEEEEEEcCCCceEEEEEccceeEEEEcCCCCCceEEEEEEEEeecCCCcEEEEEEEcCCcEEEEeeCC----- Confidence 9999999999999999999999999999999999988899999999987633 3467888888887775332 Q ss_pred ccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHH Q lcl|Aclame:pro 227 DYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKR 306 (492) Q Consensus 227 ~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 306 (492) +++.....+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|...+..++... T Consensus 222 ------~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 295 (501) T protein:vir:96 222 ------DFNEISVTTHAFGTVPITEYLNNIDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQAS 295 (501) T ss_pred ------CceeccccccCCCccceEEecCCccCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCcccchh Confidence 34556678999999999999999999999999999999999999999999999999999999987776666666 Q ss_pred hhhhccceecC---------CCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 307 LLRYYGAIKVS---------DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNL 377 (492) Q Consensus 307 ~~~~~~~~~~~---------~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~ 377 (492) .++..+++.+. .+++++|++++.+.++++.++++|+++|+.+|++|+++++++++|+||+||+++++++.+ T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ 375 (501) T protein:vir:96 296 DMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTPDMSDTNFSGNTSGEALKYKLFGLDQ 375 (501) T ss_pred hhhhcCeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHHHHHHHHHHHH Confidence 66666665542 345789999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC-----cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHH Q lcl|Aclame:pro 378 KADKLARKAKVAIQELLWFVFEHFDIKG-----EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQ 452 (492) Q Consensus 378 k~~~~~~~~~~~l~~~~~li~~~~~~~~-----~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~ 452 (492) ||..+++.|+.+|++++++|+++++..+ +..+++|+|++++|.|.++.++++++++|+||+||+++++|+++|++ T Consensus 376 ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl~g~iS~et~~~~l~~v~D~~ 455 (501) T protein:vir:96 376 DRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPKSLNEQVSILTGLGGQVSQETALSLSGLVESPN 455 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCchHHHHHhCCCCCCHH Confidence 9999999999999999999999887543 45678999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhccccC---CCCCCCCc-CCCCCCCCCC Q lcl|Aclame:pro 453 AELERIEQEQTEYNKQLPNLDD---GGADSAQQ-QERSNNKESE 492 (492) Q Consensus 453 ~E~~ri~~E~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~e 492 (492) +|++||++|+++.......... .+...+++ +..+++.|++ T Consensus 456 ~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~ 499 (501) T protein:vir:96 456 EELDKINKEMSEIDFKGYSNDFNEHVGKYTDEVKETHTDDFERE 499 (501) T ss_pred HHHHHHHHHHHHhhccccccchhhcccccCCcCCCCCCCccccc Confidence 9999999998765332221111 11111111 1111111222 No 32 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=100.00 E-value=4e-94 Score=532.60 Aligned_cols=420 Identities=20% Similarity=0.245 Sum_probs=365.9 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC Q lcl|Aclame:pro 44 TLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) Q Consensus 44 ~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 123 (492) .+.++|.+++++|..+.+||+++++||+|+|+|+.++.. ...++++|+++||+++||++.++||+|+|+++++ T Consensus 1 l~~~~l~~~i~~~~~~~~r~~~l~~yy~g~~~il~~~~~-------~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~ 73 (429) T protein:vir:98 1 MTKDLLSELIQKHRSFNLSYSAYKQLYEGDHAILQQKQK-------EQYKPDNRLVVNFAKYIVDTFNGYFIGVPVQTSH 73 (429) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-------ccCCCcceeecchHHHHHHHHhhhhcccCceeec Confidence 667889999999999999999999999999999876543 3457889999999999999999999999999999 Q ss_pred CchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc Q lcl|Aclame:pro 124 TDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN 202 (492) Q Consensus 124 ~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 202 (492) +++..++.++.|++ |+++.++.++++++++||+||++||.+++|.+++++++|++++|+|+++..+++++++++|..++ T Consensus 74 ~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~~~~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~ 153 (429) T protein:vir:98 74 ENKQVSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDENAEAGITYLTPLEAFIVYDDSIRQKPLFAVRYFYNKG 153 (429) T ss_pred CChHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCcEEEEEEcccceEEEEeCCCCCceEEEEEEEEecC Confidence 99999999998874 78999999999999999999999999999999999999999999999988889999999997654 Q ss_pred c-eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 E-TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSN 281 (492) Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~ 281 (492) . ....+|+...+++|.... .++......+|+||.||||+|+|+++|+|+|+++++|+|+||+++|++++ T Consensus 154 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liD~~d~~~s~~~~ 223 (429) T protein:vir:98 154 GVLEGSYSDASNITYFKDGE----------KGIEIGESEPHPFDGVPMIEYVENEERQSLLASVVTLINAFNKAISEKAN 223 (429) T ss_pred ceEEEEEEeCceEEEEEecC----------CceEecccccccCCccceEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHH Confidence 4 445667776666654322 23455667799999999999999999999999999999999999999999 Q ss_pred HHHhcCCceEEEecCCcccchhhHHhhhhccceecCC----CCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc Q lcl|Aclame:pro 282 TFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSD----NGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD 357 (492) Q Consensus 282 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~ 357 (492) .++++++|+++++|.+.+. ++...++..+++.+++ +++++|++++.+.+++++++++|+++|+.+|++|+++++ T Consensus 224 ~~~~~~~p~~~i~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~ 301 (429) T protein:vir:98 224 DVEYFADAYLKILGAELDD--ETLKSLRDTRIINLKDTDAQQLTVEFLQKPDADATQEHLLDRLENLIFRTAMVANISDE 301 (429) T ss_pred HHHHhcCceeeeecCCCCc--chhhhHhhCceeeccCCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCcc Confidence 9999999999999976543 4555667777887754 357999999999999999999999999999999999998 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---cceeeeEEeCCCCCcCHHHHHHHHHHHhc Q lcl|Aclame:pro 358 KFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG---EHKDVDISFNYNKVANTELQVQTAQQSMG 434 (492) Q Consensus 358 ~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~---~~~~i~i~f~~~~p~d~~e~~~~~~k~~g 434 (492) ++ ||+||+||+++++++..|+.++++.|+.+|++++++++++++... ++.+++++|++++|.|.++.++++++++| T Consensus 302 ~~-gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl~g 380 (429) T protein:vir:98 302 SF-GTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKIGPKDWIGIKYKFTRNLPANLLEESQIAGNLAG 380 (429) T ss_pred cc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHHhc Confidence 87 578999999999999999999999999999999999999987654 45678999999999999999999999999 Q ss_pred cCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCC Q lcl|Aclame:pro 435 IVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQER 485 (492) Q Consensus 435 ~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 485 (492) ++|+||+++++|+++|+++|++||++|+++..+..+...... ..+++.. T Consensus 381 ~is~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~--~~~~~~~ 429 (429) T protein:vir:98 381 IVSEETQVGVLSIVENPQKEIERKNSDKSTLISRQAGGLNGQ--NTTTILE 429 (429) T ss_pred cCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCCCCC Confidence 999999999999999999999999999987655433221111 1111111 No 33 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=100.00 E-value=2.3e-94 Score=533.96 Aligned_cols=437 Identities=19% Similarity=0.213 Sum_probs=370.5 Q ss_pred HhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc Q lcl|Aclame:pro 14 LIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLK 93 (492) Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~ 93 (492) +-=..|-. +....+.+.+.+.|.+++++|..+++||+++.+||+|+|+|++++.. ...+ T Consensus 1 ~~~~~~~~--------------~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~~~~-------~~~~ 59 (453) T protein:vir:73 1 MNLKPIKL--------------MTYSRDEEITDKVVNDFMKKHQEEVERYEYLGNMYKGIMEISSQKAK-------DSWK 59 (453) T ss_pred Ccccccee--------------eeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcCCCC-------CccC Confidence 11112222 22333455667889999999999999999999999999999876532 3457 Q ss_pred cccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEE Q lcl|Aclame:pro 94 PDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLF 172 (492) Q Consensus 94 ~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~ 172 (492) +++|+++||+++||++.++|++|+|++++++++...+.|+.|++ |+++..+.++++++++||+||++||.+++|.++++ T Consensus 60 ~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~i~ 139 (453) T protein:vir:73 60 PDNRLTNNFAKYIVDTFVGYFNGIPIKKTHDDKSVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNESTESEVI 139 (453) T ss_pred ccceeecchHHHHHHHhhhhhcccCceeecCChHHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCCCCceEEE Confidence 88999999999999999999999999999999999999998874 78999999999999999999999999999999999 Q ss_pred EEcccceEEEecCCCCCceEEEEEeeeecc-ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEe Q lcl|Aclame:pro 173 RVPAEQGIPIWTDKEHEELEAFIRMYKLEN-ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIP 251 (492) Q Consensus 173 ~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~ 251 (492) +++|++++|+|+++..+.+.++++++...+ ...+++|++..+++|....+ .+......+|+||.||||+ T Consensus 140 ~~~p~~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~----------~~~~~~~~~~~~g~vPvv~ 209 (453) T protein:vir:73 140 YCSPLNVFMVYDDSIKQKPLFAVYYGFDEEGNLSGTVYTLLETISITGKAG----------EVKFGESTYNVYSDLPIVE 209 (453) T ss_pred EEcccceEEEEeCCCCceeEEEEEEEEecCceEEEEEEeCCeEEEEEecCC----------ceEEccceeccCCceeEEE Confidence 999999999999988888999999876543 45688999998887764332 3445567789999999999 Q ss_pred ecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhcccee-----------cCCCC Q lcl|Aclame:pro 252 FKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIK-----------VSDNG 320 (492) Q Consensus 252 ~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 320 (492) |+|++.|+|+|+++++|+|+||+++|++++.++++++|+++++|+..+. +....++..+++. .+.++ T Consensus 210 ~~n~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (453) T protein:vir:73 210 YNFNEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVFLGAEVDE--EDAKNIKDNRLINFFDKNSNGQGTNAAKV 287 (453) T ss_pred ecCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCCCc--hhhhcccccccccccccccccccccccCc Confidence 9999999999999999999999999999999999999999999985432 2222222222222 23467 Q ss_pred cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH 400 (492) Q Consensus 321 d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 400 (492) +++|++++.+.+++++++++|+++|+.+|++|+++++++ ||+||+||++++++|.+||+++++.|+.+|++++++++++ T Consensus 288 d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~ 366 (453) T protein:vir:73 288 DVKFLDKPDSDVQTENLLNRLERSIFQFTMAANISDENF-GNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSL 366 (453) T ss_pred eeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcccCcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 899999999999999999999999999999999999888 5789999999999999999999999999999999999998 Q ss_pred hccCC---cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCC Q lcl|Aclame:pro 401 FDIKG---EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGA 477 (492) Q Consensus 401 ~~~~~---~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~ 477 (492) ++..+ ++.+++++|++++|.|.++.++++++++|++|+||+++++|+++|+++|++||++|+++.....+......+ T Consensus 367 ~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~giis~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~ 446 (453) T protein:vir:73 367 STNASNKDAWKDIEYTFTRNEPKDIKEQAETANILKGITSEETALSVISVIPDVQAEMEKIKKKKLLQLSLTRTSNLVRM 446 (453) T ss_pred HhccCCccccccceEEeCCCCCCCHHHHHHHHHHHhccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCcc Confidence 76443 567899999999999999999999999999999999999999999999999999999887766655443333 Q ss_pred CCCCcCC Q lcl|Aclame:pro 478 DSAQQQE 484 (492) Q Consensus 478 ~~~~~~~ 484 (492) +...++= T Consensus 447 ~~~~~~~ 453 (453) T protein:vir:73 447 KQMRGNL 453 (453) T ss_pred hhhhcCC Confidence 3333322 No 34 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=100.00 E-value=2e-93 Score=528.77 Aligned_cols=452 Identities=17% Similarity=0.193 Sum_probs=373.0 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~ 79 (492) ||-+. ..|+...+|-.|.|+.++ +...+.|.++|++|.. ++++|+++++||+|+|+|+++ T Consensus 1 ~~~~~-----~~~~~~~~~~~~~~~~~~--------------~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~ 61 (470) T protein:vir:99 1 MKDIN-----YGRDKVTGNSSFIFPKGE--------------KLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKILTA 61 (470) T ss_pred Ccccc-----CCcccccCCceEEeCCCC--------------CcCHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccC Confidence 55432 578889999999888543 3345568888888865 568999999999999999877 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCch-hHHHHHHH-HHhccHHHHHHHHHHHHHhcCeE Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD-EVVKRIDE-VLGNRFDDKLHSVLTGASNKGIE 157 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~-~~~~~l~~-~~~n~~~~~~~~~~~~~~~~G~~ 157 (492) +.. ..++++|+++||+++||++.++|++|+|++++++++ ...+.+.. |..|+++..+.+++++++++|++ T Consensus 62 ~~~--------~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~ 133 (470) T protein:vir:99 62 PEK--------ETGADNRIVVNSAKYVVDVYNGYFCGIEPKLALLNDSSKIDEIARWNRQENFFDTINEISKQCDIFGRS 133 (470) T ss_pred ccc--------ccCCcceeecchHHHHHHHHhhhhccCCeeEeeCCchhHHHHHHHHHHhcCHhHHHHHHHHHHHhcCee Confidence 533 346789999999999999999999999999988654 34455554 45689999999999999999999 Q ss_pred EEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccce----eEEEEecceEEEEEEecceeeeccccccc Q lcl|Aclame:pro 158 WLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET----KVEYWDKVTVNYYVYENGSLIPDYSNNLE 233 (492) Q Consensus 158 ~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (492) |++||.+++|++++++++|++++|+||+...+++.+++|+|..+... ..++|+...++.+.... .... T Consensus 134 ~~~v~~d~dg~~~i~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 205 (470) T protein:vir:99 134 IASIYQGEDARPHLMYSSPNHAFIIYDDTVQRQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKGYD--------IEED 205 (470) T ss_pred EEEEEeCCCCeEEEEEEccceeEEEEcCCCCcceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEecc--------cccc Confidence 99999999999999999999999999998888999999999876543 34566666555443221 1223 Q ss_pred cccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCccc--chhhHHhhhhc Q lcl|Aclame:pro 234 NSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQE--LPEFKRLLRYY 311 (492) Q Consensus 234 ~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~ 311 (492) .......+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.++++++|+++++|+..+. .++....++.. T Consensus 206 ~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~~g~~~~~~~~~ 285 (470) T protein:vir:99 206 TNAAGYAINPYGLVPAVEFFENEERQGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMIGFKLPEDDEGNPKFDFKNN 285 (470) T ss_pred cccccccccCCCccceEeecCCCCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccccccchhhhhhhc Confidence 3455677899999999999999999999999999999999999999999999999999999975432 33444555555 Q ss_pred cceec-----CCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GAIKV-----SDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKA 386 (492) Q Consensus 312 ~~~~~-----~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~ 386 (492) +++.+ +++++++|++++.+.+++++++++|+++|+.+|++|+++++++++|+||+||+++++++.+||..+++.| T Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~ 365 (470) T protein:vir:99 286 RVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKNFAGNSSGVALQYKLFAMKNKADSKERKF 365 (470) T ss_pred ceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCccccccccccCchHHHHHHHHHHHHHHHHHHHHHH Confidence 66554 3577899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhccCC----cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 387 KVAIQELLWFVFEHFDIKG----EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQ 462 (492) Q Consensus 387 ~~~l~~~~~li~~~~~~~~----~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~ 462 (492) +.+|++++++++.+++... ++.+++++|++++|.|.++.++++++++|++|+||+++++|++ |+++|++||++|+ T Consensus 366 ~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~giis~et~l~~l~~v-d~~~E~eri~~E~ 444 (470) T protein:vir:99 366 DKSLMQLYRIVLATLFNNKQDQELWSELDFKFTRNLPEDMASAIDNAKNAEGIVSKKTQLGMIPDI-EPDAEMKQIAKEK 444 (470) T ss_pred HHHHHHHHHHHHHHHhccCCcccccccceEEeCCCCCcCHHHHHHHHHHHhccCCHHHHHHhCCCC-CHHHHHHHHHHHH Confidence 9999999999999886543 4568999999999999999999999999999999999999999 7999999999998 Q ss_pred HHHHHhhccccCCCCCCCCcCCCCCCCC Q lcl|Aclame:pro 463 TEYNKQLPNLDDGGADSAQQQERSNNKE 490 (492) Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (492) ++..+..+....+....+.+ ..++++ T Consensus 445 ~~~~~~~~~~~~~~d~~~~d--~~~ee~ 470 (470) T protein:vir:99 445 ADAIKQTQQLSMPIDILKRD--NNAEEE 470 (470) T ss_pred HHHHHHHHhhcCCCCcCCCC--CCccCC Confidence 87665544333222222111 111111 No 35 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=100.00 E-value=7.5e-94 Score=531.13 Aligned_cols=454 Identities=19% Similarity=0.244 Sum_probs=370.1 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~ 79 (492) |+|= -+.+++++..|+ +.+ .+++.+.|.+++++|.. ++++|+++.+||+|+|+++.+ T Consensus 1 ~~~~-------~~~~~~~~~~~~------~~~---------~~l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~ 58 (506) T protein:vir:94 1 MDYD-------LTEHKQANLIYQ------ESL---------ENLTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILD 58 (506) T ss_pred CCcc-------hhhhhcceeecc------cch---------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Confidence 6553 245677777662 111 22334567778877754 688999999999999976533 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~ 158 (492) +.. ......++++|+++||+++||++.++||+|+|++++++++..++.|+.|+ .|+++..+.+++++++++|+|| T Consensus 59 ~~~----~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~G~p~~~~~~d~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~ 134 (506) T protein:vir:94 59 KQS----RRHEDGKADHRATHSFAKYIADFQTSYSVGNPINVKLPDDGSNSGFDTFNKANDVDAENYDLFLDMSRYGRAY 134 (506) T ss_pred ccc----ccccccCCcceeecchHHHHHHHhhhhhcccCceeecCcchHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEE Confidence 321 12345578899999999999999999999999999999999999999887 5799999999999999999999 Q ss_pred EEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccce---------eEEEEecceEEEEEEecceeeeccc Q lcl|Aclame:pro 159 LHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET---------KVEYWDKVTVNYYVYENGSLIPDYS 229 (492) Q Consensus 159 ~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (492) ++||.+++|.+++++++|++++|+|+++..++++++|++|...... ..++|+...+..|. . T Consensus 135 ~~v~~ded~~~~i~~~~p~~~~~v~dd~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~----------~ 204 (506) T protein:vir:94 135 EYVYRGEDNEEHLAKLDPLDTFVIYSTDVDPKPIMAVRYHQIELVDDNQVSTINYVPETWTADTYTLYN----------P 204 (506) T ss_pred EEEEecCCCeeEEEEEcccceEEEecCCCCCceEEEEEEEeeeeccCCceeEEEEEEEEEeCceEEEec----------c Confidence 9999999999999999999999999998888999999998754322 23344444443332 2 Q ss_pred cccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcc---------- Q lcl|Aclame:pro 230 NNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQ---------- 299 (492) Q Consensus 230 ~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~---------- 299 (492) ...++......+|+||.||||+|+|++.|.|+|+++++|||+||.++|++++.++++++|+++++|.... T Consensus 205 ~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 284 (506) T protein:vir:94 205 TPIMGKMQVDTTKPITTFPVVEFKNSNFRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNT 284 (506) T ss_pred ccCccceeccccccCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhcccc Confidence 2234455667789999999999999999999999999999999999999999999999999999986421 Q ss_pred --------------cchhhHHhhhhccceecCC---------CCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCc Q lcl|Aclame:pro 300 --------------ELPEFKRLLRYYGAIKVSD---------NGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS 356 (492) Q Consensus 300 --------------~~~~~~~~~~~~~~~~~~~---------~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~ 356 (492) ...++...++..+++.+++ +++++|++++.+.+++++++++|.+.|+.+|++|++++ T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~ 364 (506) T protein:vir:94 285 IDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTD 364 (506) T ss_pred ccccccccccccccchhHHHhhhhhcCeeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCcccccc Confidence 2223444455666666554 45899999999999999999999999999999999999 Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----CcceeeeEEeCCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 357 DKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK-----GEHKDVDISFNYNKVANTELQVQTAQQ 431 (492) Q Consensus 357 ~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-----~~~~~i~i~f~~~~p~d~~e~~~~~~k 431 (492) +++++++||+||+++++++.+||+++++.|+++|++++++|+++++.. .++.+++|+|++++|.|.++.|+++++ T Consensus 365 ~~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~k 444 (506) T protein:vir:94 365 ENFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNISQIKALVQ 444 (506) T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHHHHHHHHHH Confidence 999999999999999999999999999999999999999999998643 345678999999999999999999999 Q ss_pred HhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 432 SMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 432 ~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ++|+||+||+++++|+++|+++|++||++|+++.....+.....+ ..++.+..+++++| T Consensus 445 l~g~iS~et~~~~lp~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 503 (506) T protein:vir:94 445 AGATLPQKYLYQQLPGVTNPQDIVDMMKEQSANGDYSFDQNGVIS--NDGQTNTTATQTDE 503 (506) T ss_pred HhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcchhhcCCC--cccCcccccccccc Confidence 999999999999999999999999999999877655443332222 22223344444444 No 36 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=100.00 E-value=1.8e-93 Score=528.99 Aligned_cols=445 Identities=21% Similarity=0.272 Sum_probs=370.8 Q ss_pred CcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---ccccc-------cccccccccccccc Q lcl|Aclame:pro 26 PTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDI---VKEPK-------PVDATGAVDPLKPD 95 (492) Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i---~~~~~-------~~~~~~~~~~~~~~ 95 (492) -|.+.++..+.. .+.+.++|.++|+.|..+++|+.++.+||+|.++. ..++. +..........+++ T Consensus 1 ~~~~~~~~~~~~----~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:94 1 MTLYKLIDDIEA----QGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVN 76 (474) T ss_pred CchHHHHhhccc----cCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcc Confidence 234444443322 34456788999999999999999999999997653 22221 11122344567899 Q ss_pred cccccchHHHHHHHHHHhhhcCCeeecCC-----chhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce Q lcl|Aclame:pro 96 DRMITNFHANLVDQKVSYIVGKPIAFKHT-----DDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF 169 (492) Q Consensus 96 ~ri~~n~~~~ivd~~~~~l~g~~~~~~~~-----d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~ 169 (492) +||++||+++||++.++|++|+|++++++ ++...+.|+.|++ |+++..+.+++++++++|+||+++|.+++|++ T Consensus 77 ~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~ 156 (474) T protein:vir:94 77 NKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDI 156 (474) T ss_pred cccccchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCee Confidence 99999999999999999999999999874 4566778887764 78999999999999999999999999999999 Q ss_pred EEEEEcccceEEEecCCCCCceEEEEEeeeeccc------eeEEEEecceEEEEEEecceeeeccccccccccccceecc Q lcl|Aclame:pro 170 KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE------TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGS 243 (492) Q Consensus 170 ~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (492) ++++++|++++|+||+ ..++++++++|...+. ..+++|+...++.|.... ..++......+|+ T Consensus 157 ~~~~i~p~~~~~v~d~--~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~---------~~~~~~~~~~~~~ 225 (474) T protein:vir:94 157 RIKNIDPYNVIFVGDN--ILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEG---------IDALQEVGRYEHL 225 (474) T ss_pred EEEEEcccceEEEEcC--CCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecC---------CCcccccccccCC Confidence 9999999999999986 4468899998876432 245677777666554322 2234566678999 Q ss_pred CCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhcccee-cCCCCcc Q lcl|Aclame:pro 244 WGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIK-VSDNGGV 322 (492) Q Consensus 244 ~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 322 (492) ||.||||+|+|+++|+|+|+++++|+|+||.++|++++.++++++|+++++|+..++ +....++..+++. .++++++ T Consensus 226 ~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~~~~--~~~~~~~~~~~i~~~~~~~~~ 303 (474) T protein:vir:94 226 FDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSE--EMIQETQKSGAFELFDKDMDV 303 (474) T ss_pred CCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCCc--hhhhhhhhcceeEecCCCCce Confidence 999999999999999999999999999999999999999999999999999986543 3344455555554 4778999 Q ss_pred eeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 323 DTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD 402 (492) Q Consensus 323 ~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 402 (492) +|++++.+.++++.++++|+++|+.+|++|++++++++||+||+||+++++++.+||..+++.|+.+|++++++|+++++ T Consensus 304 ~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~ 383 (474) T protein:vir:94 304 KYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALK 383 (474) T ss_pred eEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987 Q ss_pred cC------CcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCC Q lcl|Aclame:pro 403 IK------GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGG 476 (492) Q Consensus 403 ~~------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~ 476 (492) .. .++.+++++|++++|.|.++.|+++++++|++|+||+++++|+++|+++|++||++|+++..+..+....++ T Consensus 384 ~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~~~~~~~~ 463 (474) T protein:vir:94 384 RKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLKGQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDEGD 463 (474) T ss_pred hccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccCCC Confidence 54 245689999999999999999999999999999999999999999999999999999988888776665555 Q ss_pred CCCCCcCCCCC Q lcl|Aclame:pro 477 ADSAQQQERSN 487 (492) Q Consensus 477 ~~~~~~~~~~~ 487 (492) .+..+++.+++ T Consensus 464 ~~~~~~~~~s~ 474 (474) T protein:vir:94 464 ANDKSQNNQSE 474 (474) T ss_pred cCCCCccccCC Confidence 44444433333 No 37 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=100.00 E-value=1.8e-93 Score=528.99 Aligned_cols=445 Identities=21% Similarity=0.272 Sum_probs=370.8 Q ss_pred CcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---ccccc-------cccccccccccccc Q lcl|Aclame:pro 26 PTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDI---VKEPK-------PVDATGAVDPLKPD 95 (492) Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i---~~~~~-------~~~~~~~~~~~~~~ 95 (492) -|.+.++..+.. .+.+.++|.++|+.|..+++|+.++.+||+|.++. ..++. +..........+++ T Consensus 1 ~~~~~~~~~~~~----~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (474) T protein:vir:10 1 MTLYKLIDDIEA----QGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVN 76 (474) T ss_pred CchHHHHhhccc----cCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcc Confidence 234444443322 34456788999999999999999999999997653 22221 11122344567899 Q ss_pred cccccchHHHHHHHHHHhhhcCCeeecCC-----chhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce Q lcl|Aclame:pro 96 DRMITNFHANLVDQKVSYIVGKPIAFKHT-----DDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF 169 (492) Q Consensus 96 ~ri~~n~~~~ivd~~~~~l~g~~~~~~~~-----d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~ 169 (492) +||++||+++||++.++|++|+|++++++ ++...+.|+.|++ |+++..+.+++++++++|+||+++|.+++|++ T Consensus 77 ~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~ 156 (474) T protein:vir:10 77 NKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDI 156 (474) T ss_pred cccccchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCee Confidence 99999999999999999999999999874 4566778887764 78999999999999999999999999999999 Q ss_pred EEEEEcccceEEEecCCCCCceEEEEEeeeeccc------eeEEEEecceEEEEEEecceeeeccccccccccccceecc Q lcl|Aclame:pro 170 KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE------TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGS 243 (492) Q Consensus 170 ~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (492) ++++++|++++|+||+ ..++++++++|...+. ..+++|+...++.|.... ..++......+|+ T Consensus 157 ~~~~i~p~~~~~v~d~--~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~---------~~~~~~~~~~~~~ 225 (474) T protein:vir:10 157 RIKNIDPYNVIFVGDN--ILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEG---------IDALQEVGRYEHL 225 (474) T ss_pred EEEEEcccceEEEEcC--CCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecC---------CCcccccccccCC Confidence 9999999999999986 4468899998876432 245677777666554322 2234566678999 Q ss_pred CCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhcccee-cCCCCcc Q lcl|Aclame:pro 244 WGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIK-VSDNGGV 322 (492) Q Consensus 244 ~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 322 (492) ||.||||+|+|+++|+|+|+++++|+|+||.++|++++.++++++|+++++|+..++ +....++..+++. .++++++ T Consensus 226 ~g~vPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~~~~--~~~~~~~~~~~i~~~~~~~~~ 303 (474) T protein:vir:10 226 FDYNPLFGVPNNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMGMSE--EMIQETQKSGAFELFDKDMDV 303 (474) T ss_pred CCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCCCCc--hhhhhhhhcceeEecCCCCce Confidence 999999999999999999999999999999999999999999999999999986543 3344455555554 4778999 Q ss_pred eeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 323 DTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD 402 (492) Q Consensus 323 ~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 402 (492) +|++++.+.++++.++++|+++|+.+|++|++++++++||+||+||+++++++.+||..+++.|+.+|++++++|+++++ T Consensus 304 ~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~ 383 (474) T protein:vir:10 304 KYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALK 383 (474) T ss_pred eEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987 Q ss_pred cC------CcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCC Q lcl|Aclame:pro 403 IK------GEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGG 476 (492) Q Consensus 403 ~~------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~ 476 (492) .. .++.+++++|++++|.|.++.|+++++++|++|+||+++++|+++|+++|++||++|+++..+..+....++ T Consensus 384 ~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl~g~iS~et~~~~l~~v~d~~~E~eri~~E~~e~~~~~~~~~~~~ 463 (474) T protein:vir:10 384 RKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINLKGQVSERTRLGQSQLVDDVDYELDEMEKESLEFNDKLPDIDEGD 463 (474) T ss_pred hccCCCCccccccceEEeCCCCCCCHHHHHHHHHHHhccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccCCC Confidence 54 245689999999999999999999999999999999999999999999999999999988888776665555 Q ss_pred CCCCCcCCCCC Q lcl|Aclame:pro 477 ADSAQQQERSN 487 (492) Q Consensus 477 ~~~~~~~~~~~ 487 (492) .+..+++.+++ T Consensus 464 ~~~~~~~~~s~ 474 (474) T protein:vir:10 464 ANDKSQNNQSE 474 (474) T ss_pred cCCCCccccCC Confidence 44444433333 No 38 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=100.00 E-value=2.5e-93 Score=528.28 Aligned_cols=456 Identities=21% Similarity=0.290 Sum_probs=363.2 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCccccccccccc---ccccccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQH--LEKLPEISIGQEYYEQRPDIVKEPKPVDA---TGAVDPLKPDDRM 98 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~~~~~~~~~YY~G~~~i~~~~~~~~~---~~~~~~~~~~~ri 98 (492) ++|+ . ..-..+.+.++|.+.+..| .+++++++++++||+|+|+|++++....+ ....+..++|+|| T Consensus 1 ~~~~--~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki 71 (537) T protein:vir:78 1 MTSP--L-------LNKPIDQLGGLLNTEITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKI 71 (537) T ss_pred CCcc--c-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhccccccccccccccccccccccc Confidence 3331 1 1223455677777766655 35789999999999999999988765433 3345667899999 Q ss_pred ccchHHHHHHHHHHhhhcCCeeecCCch---hHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 99 ITNFHANLVDQKVSYIVGKPIAFKHTDD---EVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVP 175 (492) Q Consensus 99 ~~n~~~~ivd~~~~~l~g~~~~~~~~d~---~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~ 175 (492) ++||+++||++.++||+|+||+++++++ +..+.++.|.+++++..+.+++++++++|+||+++|.+++|.++++.++ T Consensus 72 ~~nf~k~Ivd~~~~yl~G~Pv~~~~~d~~~~e~~~~l~~~~~~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~~~~i~ 151 (537) T protein:vir:78 72 SHGFFTELVDQLAQYLLSNGVEVKVKDEDNTQLDEILQEYFDEDFQATIDTLVTNASKKGFEGIFARTTSEGKLKFQTVD 151 (537) T ss_pred ccchHHHHHHHHhhhhcccCceeecCcchhHHHHHHHHHHhhccHHHHHHHHHHHHhhcCeeEEEeeecCCCceEEEEEc Confidence 9999999999999999999999998764 4556677778889999999999999999999999999999999999999 Q ss_pred ccceEEEecCCCCCceEEEEEeeeec----------cceeEEEEecceEEEEEEecceeeecc----------------- Q lcl|Aclame:pro 176 AEQGIPIWTDKEHEELEAFIRMYKLE----------NETKVEYWDKVTVNYYVYENGSLIPDY----------------- 228 (492) Q Consensus 176 p~~~~~i~d~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 228 (492) |+++|||||+. .++.+++++|... ...++++|++..+++|....+...... T Consensus 152 p~~~~pv~d~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 229 (537) T protein:vir:78 152 GLTLIPVFDDY--GVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAI 229 (537) T ss_pred cceeEEEEcCC--CCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeec Confidence 99999999964 5788888877531 224688999999999987765432211 Q ss_pred -----ccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchh Q lcl|Aclame:pro 229 -----SNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPE 303 (492) Q Consensus 229 -----~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~ 303 (492) ............+|+||.||||+|.||+.|+|+|+++++|||+||.++|+++|.+++|++|+++++|+++++.++ T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~g~~~~~~~~ 309 (537) T protein:vir:78 230 EESTDADFEDTDGYQVLGRSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVKGFSGDSTDK 309 (537) T ss_pred cccccccccccccccccccCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeeecCCCccchh Confidence 111223445667899999999999999999999999999999999999999999999999999999998888888 Q ss_pred hHHhhhhccceecC-CCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 FKRLLRYYGAIKVS-DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKL 382 (492) Q Consensus 304 ~~~~~~~~~~~~~~-~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~ 382 (492) +...++..+++.++ ++++|+|++|+.+.++.+.++++|+++||.+|++|+.+.. ++||+||+||++++++|.+||+.+ T Consensus 310 ~~~~l~~~~~i~v~~d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~s~~~~~~~~-~~gn~SGvAlk~~~~~l~~ka~~k 388 (537) T protein:vir:78 310 LRQNIKAKKMIGVNGDNAGMEIQTVSIPYEARKAKMDIDVENIYRSGMGFNSTAV-GDGNVTNVVIKSRYTLLAMKARKM 388 (537) T ss_pred HHHHHhhcCceeecCCCCceeEEEecCCHHHHHHHHHHHHHHHHHhcCCCCCccc-cccCCcHHHHHHHHhhHHHHHHHH Confidence 88889888888876 5789999999999999999999999999999999997754 567899999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhccC----CcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHH Q lcl|Aclame:pro 383 ARKAKVAIQELLWFVFEHFDIK----GEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFVEDLQAELE 456 (492) Q Consensus 383 ~~~~~~~l~~~~~li~~~~~~~----~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v~D~~~E~~ 456 (492) ++.|+++|++++++|+++++.. .++.+++++|++++|.|.++.|++++++. |++|+||+++++|+|+|++.| + T Consensus 389 e~~f~~~l~~~~~~i~~~~~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~p~vdd~e~e-k 467 (537) T protein:vir:78 389 ETSLRKVLRWCADMVVSDIALRGLGEYDSNDICFEIEPHVLANELDIATTRKTEAETEALKIGNIMTVAPRIGDDETL-K 467 (537) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccccceeeEEeccCCCCCHHHHHHHHHHHHhcCcchHHHHHHhCCCCCCHHHH-H Confidence 9999999999999999998754 36678999999999999999999999874 899999999999999998533 3 Q ss_pred HHHHHHHHHHHhhcccc------------C-----CCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 457 RIEQEQTEYNKQLPNLD------------D-----GGADSAQQQERSNNKESE 492 (492) Q Consensus 457 ri~~E~~~~~~~~~~~~------------~-----~~~~~~~~~~~~~~~~~e 492 (492) ++++|............ + ++.....+++..+.+++. T Consensus 468 ~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 520 (537) T protein:vir:78 468 LIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPNQPV 520 (537) T ss_pred HHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCccCCC Confidence 33333221111110000 0 000000000001111111 No 39 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=100.00 E-value=1.5e-91 Score=518.45 Aligned_cols=456 Identities=18% Similarity=0.249 Sum_probs=370.6 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHL-EKLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~YY~G~~~i~~~ 79 (492) |-.|.++ |..-.|..|-++ +...+...+.|.++|++|. .++++++++.+||+|+|+.... T Consensus 6 ~~~~~~~------~~~~~~~~~~~~-------------~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~i~~ 66 (481) T protein:vir:10 6 INNINTK------FSPLANDDFVVS-------------DLAELLKEENLRNFISRHQTEQVPRLEMLESYYLNRNTDILA 66 (481) T ss_pred eehhchh------cccccCceeeee-------------cchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Confidence 4333333 333344455333 2334445677888888875 6789999999999999864332 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~ 158 (492) +.. .......++++|+++||+++||++.++|++|+|++++++++...+.++.++ .|+++.++.+++++++++|+|| T Consensus 67 ~~~---~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~ 143 (481) T protein:vir:10 67 GER---RLQKYGDKADHRAVHNYAKYVSRFIVGYLTGNPITITHQDNQTNDKIIELNDLNDADEVNSDLALNLSIYGRAY 143 (481) T ss_pred Ccc---ccccccccccceeecchHHHHHHHHHhhhccCCceEecCChhHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEE Confidence 211 122344577889999999999999999999999999999999998888877 4789999999999999999999 Q ss_pred EEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccc-----eeEEEEecceEEEEEEecceeeeccccccc Q lcl|Aclame:pro 159 LHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE-----TKVEYWDKVTVNYYVYENGSLIPDYSNNLE 233 (492) Q Consensus 159 ~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (492) +++|.+++|++++++++|++++|+||+...+++.+++++|...+. .++++|++..+++|....+ + T Consensus 144 ~~~~~d~dg~~~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~----------~ 213 (481) T protein:vir:10 144 EIVYRDFEDRDTFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGG----------T 213 (481) T ss_pred EEEEeCCCCeEEEEEEcccceEEEEcCCCCCceEEEEEEEEEeeCCCceEEEEEEEecCeEEEEEecCC----------c Confidence 999999999999999999999999999888899999999876443 4567888888887765443 3 Q ss_pred cccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccc Q lcl|Aclame:pro 234 NSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGA 313 (492) Q Consensus 234 ~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 313 (492) +..+...+|+||.||||+|+|+..|+|+|+++++|||+||+++|++++.++++++|+++++|....+.+. ....+..++ T Consensus 214 ~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 292 (481) T protein:vir:10 214 YHRVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDTANYMTDLNDAMLAIIGNVDLDSED-AKAFRDANM 292 (481) T ss_pred eeecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCcCCCccc-hhhhhhccc Confidence 4455678999999999999999999999999999999999999999999999999999999864433222 222222333 Q ss_pred ee---------cCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 IK---------VSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLAR 384 (492) Q Consensus 314 ~~---------~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~ 384 (492) +. .+++++++|++++.+.+++++++++|+++|+.+|++|+++++.+++|+||+||++++++|.+||+++++ T Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~ 372 (481) T protein:vir:10 293 IHLEPGTNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLNDEQFSGVQSGESMKYKLFGLEQVRAIKER 372 (481) T ss_pred eeccccccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHH Confidence 22 234678999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhccCC----cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 385 KAKVAIQELLWFVFEHFDIKG----EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQ 460 (492) Q Consensus 385 ~~~~~l~~~~~li~~~~~~~~----~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~ 460 (492) .|+.+|++++++++++++... +..+++++|++++|+|.++.++++++++|+||+||+++++|+++|+++|++||++ T Consensus 373 ~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl~g~is~et~~~~l~~i~d~~~E~~ri~~ 452 (481) T protein:vir:10 373 LFKKGLMKRYKLLLNNVNLTGLKQHNYAELTITFTPNLPKSMMESINAFNALSGGVSESTRLSLLDFIDNPKEELEKMQE 452 (481) T ss_pred HHHHHHHHHHHHHHHHHhccCCCccccceeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHH Confidence 999999999999999987653 4568999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhhccccCCCCCCCCcCCCCCCCC Q lcl|Aclame:pro 461 EQTEYNKQLPNLDDGGADSAQQQERSNNKE 490 (492) Q Consensus 461 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (492) |+++..+..+....+.+....++ .+++++ T Consensus 453 E~~~~~~~~~~~~~~~~~~~~~~-~dd~~g 481 (481) T protein:vir:10 453 EEAQREKQADKRGYGEAFENHLN-VDDSNG 481 (481) T ss_pred HHHHHHhhhhhccCCccCCCCCC-CCCCCC Confidence 99876665443332222222111 111222 No 40 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=100.00 E-value=8.9e-92 Score=519.76 Aligned_cols=421 Identities=17% Similarity=0.210 Sum_probs=353.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCch- Q lcl|Aclame:pro 48 MIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD- 126 (492) Q Consensus 48 ~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~- 126 (492) +|.. .+..+++||+++.+||+|+|+++.++... ....++++|+++||+++||++.++||+|+|+++++.++ T Consensus 1 ~~~~---~~~~~~~r~~~l~~yy~g~~~~~~~~~~~-----~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~ 72 (440) T protein:vir:95 1 MLAA---FLGSQKQRLAILASYAQGDNFSILSGHRR-----LDDEKADYRVRHKWGGYISSFATGYVIGNPVSIGVMEGG 72 (440) T ss_pred Chhh---HHHHHHHHHHHHHHHhccCCccccccccc-----ccccCCcceeecchHHHHHHhhhhheeccCceEeeCCCc Confidence 3332 34467889999999999999987655332 34567889999999999999999999999999987554 Q ss_pred --hHHHHHHHH-HhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccc Q lcl|Aclame:pro 127 --EVVKRIDEV-LGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE 203 (492) Q Consensus 127 --~~~~~l~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~ 203 (492) +..+.|+.+ ..|+++..+.++++++++||+||+++|.+++|++++++++|++++|+||+...+++.+++++|..++. T Consensus 73 ~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~ 152 (440) T protein:vir:95 73 SADQLSTIKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVDRVVLISPLEMFVIRDLTVEQNIIAAVHLPIYADK 152 (440) T ss_pred cHHHHHHHHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCceEEEEEcccceEEEEcCCCCCceEEEEEEEEecCc Confidence 344456554 46899999999999999999999999999999999999999999999999888899999999999999 Q ss_pred eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 204 TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTF 283 (492) Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~ 283 (492) ..+++|++..+++|..... ...++......+|+||.||||+|+|++.|+|+|+++++|||+||.++|++++.+ T Consensus 153 ~~~~vyt~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~lida~~~~~s~~~~~~ 225 (440) T protein:vir:95 153 VNMTVYTKDKVITYKPYSN-------NSVRLVVDDVKKHSYNDVPVVEWWNNRFRMGDYESEISLIDAYDAGQSDTANYM 225 (440) T ss_pred eEEEEEeCCeEEEEEEecC-------CccceeecceeeccCceeeEEEeeCCCCCCCchhhhHHHHHHHHHHHHHHHHHH Confidence 9999999999988764332 123455667789999999999999999999999999999999999999999999 Q ss_pred HhcCCceEEEecCCcc--cchhhHHhhhhcccee---------cCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 284 KDSNELTYVLKNYDDQ--ELPEFKRLLRYYGAIK---------VSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAV 352 (492) Q Consensus 284 ~~~~~~~l~~~g~~~~--~~~~~~~~~~~~~~~~---------~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p 352 (492) ++|++|+++++|.... ..++....++...++. .+++++++|++++++.++++.++++|+++|+.+|++| T Consensus 226 ~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p 305 (440) T protein:vir:95 226 SDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLKTGISTTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIP 305 (440) T ss_pred HHhhcceeeeecccccCCCCccchhhhhhccceecccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCc Confidence 9999999999996322 1223333333333332 2456789999999999999999999999999999999 Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcceeeeEEeCCCCCcCHHHHHHH Q lcl|Aclame:pro 353 DFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK----GEHKDVDISFNYNKVANTELQVQT 428 (492) Q Consensus 353 ~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----~~~~~i~i~f~~~~p~d~~e~~~~ 428 (492) +++++++++|+||+||+++++++.+|++++++.|+++|++++++++++++.. .+..+++++|++++|+|.++.+++ T Consensus 306 ~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~~p~~~~~~ad~ 385 (440) T protein:vir:95 306 NLDDDRFNSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGPVIEANKLTFTFHPNIPQDVWTEIKA 385 (440) T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEeCCCCCCCHHHHHHH Confidence 9999999999999999999999999999999999999999999999987643 356789999999999999999999 Q ss_pred HHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCC Q lcl|Aclame:pro 429 AQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKE 490 (492) Q Consensus 429 ~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (492) +++++|++|+||+++++|+++ +++|++||++|+++.........+...+.+.+. | T Consensus 386 ~~kl~g~iS~et~~~~l~~~d-~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~------e 440 (440) T protein:vir:95 386 YIEAGGEISQETLMENASFTD-YKTEHSRILKQGGSSDLEIGQIVGDADVGQADT------E 440 (440) T ss_pred HHHHhccCcHHHHHHhCCCCC-cHHHHHHHHHHHHHhhhhHHhhccCCCCCCcCC------C Confidence 999999999999999999985 568999999998876655443322221111111 1 No 41 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=100.00 E-value=2.9e-90 Score=511.43 Aligned_cols=446 Identities=21% Similarity=0.260 Sum_probs=362.9 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCccccccccccccccccccccccccccch Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHL-EKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNF 102 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~ 102 (492) .+ -++++....+.+...+.|.+++.+|. .+++||+++++||+|+|++++++.+. ...++++|+++|| T Consensus 1 ~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~------~~~~~~~ki~~n~ 68 (489) T protein:vir:99 1 ML------QEDFEAIDYESKLWIDQLKNYISRFKAEQLERLKELKRYYLGDNNIKYRPAKT------DKYAADNRIASDF 68 (489) T ss_pred CC------ccceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccc------cccCCcceeecch Confidence 11 12233444455556677888888875 57799999999999999998776542 3346788999999 Q ss_pred HHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEEEEEEe----CCCCceEEEEEccc Q lcl|Aclame:pro 103 HANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYL----DEEGEFKLFRVPAE 177 (492) Q Consensus 103 ~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~----d~~g~~~i~~~~p~ 177 (492) +++||++.++|++|+|++++++++...+.++.|+ .|+++..+.++++.++++|+||+++|. |++|++++++++|+ T Consensus 69 ~~~iv~~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~ 148 (489) T protein:vir:99 69 AKYITVFEQGYMLGVPVEYKNENKDLQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAE 148 (489) T ss_pred HHHHHHHHhhhhccCCceeecCChhHHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEccc Confidence 9999999999999999999999999999998877 479999999999999999999999986 56789999999999 Q ss_pred ceEEEecCCCCCceEEEEEeeeeccc-----eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEee Q lcl|Aclame:pro 178 QGIPIWTDKEHEELEAFIRMYKLENE-----TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPF 252 (492) Q Consensus 178 ~~~~i~d~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~ 252 (492) +++|+|++...+++.+++++|..+.. ..+++|++..+++|..... ...+.......+|+||.||||+| T Consensus 149 ~~~~v~dd~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~g~vPvv~~ 221 (489) T protein:vir:99 149 QTFVIYDDTYQRNSLMAVHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNL-------ETKGMRLKDYEGHFFKGVPVNEY 221 (489) T ss_pred ceEEEEcCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEecCC-------CcccceecccccccCCceeEEEe Confidence 99999999888999999999876433 3577888888877654321 12233455678899999999999 Q ss_pred cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccc--hhhHH--------------hhhhccceec Q lcl|Aclame:pro 253 KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQEL--PEFKR--------------LLRYYGAIKV 316 (492) Q Consensus 253 ~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~--------------~~~~~~~~~~ 316 (492) +|++.|+|+|+++++|+|+||.++|++++.++++++|+++++|...... .+... ..+..+++.+ T Consensus 222 ~n~~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489) T protein:vir:99 222 ANNEERTGAYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGNAYTGADENDYLDDGRLNPNGRLAISIGFKKAQVLIL 301 (489) T ss_pred ecCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccchhhhhhcccccccccccccccccceeeee Confidence 9999999999999999999999999999999999999999999753321 11111 1112223333 Q ss_pred CC-------CCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 317 SD-------NGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVA 389 (492) Q Consensus 317 ~~-------~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~ 389 (492) .+ +.+++|++++.+.++++.++++|.+.|+.+|++|+++++++++|+||+||+++++++.+||..+++.|+.+ T Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~ 381 (489) T protein:vir:99 302 DDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQDMKFSGVQSGESMKYKLMASDNYREKQERLFKKG 381 (489) T ss_pred ccccCccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22 34789999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhccCC-------cceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCC--CHHHHHHHHHH Q lcl|Aclame:pro 390 IQELLWFVFEHFDIKG-------EHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVE--DLQAELERIEQ 460 (492) Q Consensus 390 l~~~~~li~~~~~~~~-------~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~--D~~~E~~ri~~ 460 (492) |++++++|+.+++..+ ++.+++|+|++++|.|.++.++++++++|++|+||+++++|+++ |+++||+||++ T Consensus 382 l~~~~~li~~~~~~~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~giis~et~~~~l~~v~~~d~~~E~~ri~~ 461 (489) T protein:vir:99 382 LMRRLRLAANIWAIKGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLYGIVSDQTIFEILNTVTGVDAEAELKRLKE 461 (489) T ss_pred HHHHHHHHHHHHhhcCCccccccccccceEEeCCCCCcCHHHHHHHHHHHhccCCHHHHHHhcCCCCchhHHHHHHHHHH Confidence 9999999999987543 23578999999999999999999999999999999999999996 78999999999 Q ss_pred HHHHHHHhhccccCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 461 EQTEYNKQLPNLDDGGADSAQQQERSNNKES 491 (492) Q Consensus 461 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (492) |+++.....+....+..+.. ++...+++ T Consensus 462 E~~~~~~~~~~~~~~~~~~~---~~~~~~~p 489 (489) T protein:vir:99 462 EADKKQSLPEPRLVGDASGQ---EEPTAEKP 489 (489) T ss_pred HHHHHhccccccccCCCCCC---cCCCCCCC Confidence 98766544332222221111 11222222 No 42 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=100.00 E-value=2.1e-80 Score=457.41 Aligned_cols=442 Identities=12% Similarity=0.083 Sum_probs=338.4 Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 32 FDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 32 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~ 111 (492) |....-.-.+++...+++.+++.+|..+++|++++.+||+|+|++.+.+.... ....+.++++||+++||++.+ T Consensus 1 ~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~~------~~~~~~~~v~n~~~~iVd~~~ 74 (486) T protein:vir:42 1 MTAPLPGMEEIEDPAVVREEMISAFEDASKDLASNTSYYDAERRPEAIGVTVP------REMQQLLAHVGYPRLYVDSVA 74 (486) T ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchhcccccc------hhHhhhhhccchHHHHHHHHH Confidence 22222233446666788999999999999999999999999998876543322 222355788999999999999 Q ss_pred HhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCC--------CCceEEEEEcccceEEEe Q lcl|Aclame:pro 112 SYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDE--------EGEFKLFRVPAEQGIPIW 183 (492) Q Consensus 112 ~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~--------~g~~~i~~~~p~~~~~i~ 183 (492) +|+.+.+++...+++......+.|..|+++..+.++++++++|||||++||.++ ++.+++++++|++++++| T Consensus 75 ~~l~~~g~~~~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i~ 154 (486) T protein:vir:42 75 ERQAVEGFRLGDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAEI 154 (486) T ss_pred hhhcccceecCCCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEEE Confidence 999888887554444444455556679999999999999999999999999875 456799999999999999 Q ss_pred cCCCCCceEEEEEeeeeccc---eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc---- Q lcl|Aclame:pro 184 TDKEHEELEAFIRMYKLENE---TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND---- 256 (492) Q Consensus 184 d~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~---- 256 (492) |+. .+++.+++++|...+. ..+++|++..+++|....+ ++......+|+||.||||+|.|++ T Consensus 155 d~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~----------~~~~~~~~~h~~g~vPvv~~~n~~~~~~ 223 (486) T protein:vir:42 155 DPR-INRVSKAIRVAYDKEGNEIQAATLYTPMETIGWFRADG----------EWAEWFNVPHGLGVVPVVPLPNRTRLSD 223 (486) T ss_pred eCC-CCCeEEEEEEEEecCCCeEEEEEEEcCCcEEEEEecCC----------cEEeecceecCCCCceEEEeccccccCC Confidence 975 4678999988876543 3467888888777765433 233445678999999999999985 Q ss_pred -CCCCcHHH-HHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhH----Hhhh-hccceecCCCCcceeeeccc Q lcl|Aclame:pro 257 -LEISDIFM-YKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFK----RLLR-YYGAIKVSDNGGVDTIQVEV 329 (492) Q Consensus 257 -~~~s~~~~-v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~~~-~~~~~~~~~~~d~~~l~~~~ 329 (492) +|+|+|+. |++|||+||+++|++++.++++++|+++++|.+.+...... .... ....+...+++++++.+ . T Consensus 224 ~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q--~ 301 (486) T protein:vir:42 224 LYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDSETGQTLFDAYLARILAFEDAEGKIQQ--F 301 (486) T ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCccccccccccccchhhhhhchhcccCCCCceEEe--e Confidence 57899984 99999999999999999999999999999997654322111 0111 11223344567788754 4 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC- Q lcl|Aclame:pro 330 PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA----PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK- 404 (492) Q Consensus 330 ~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~----~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~- 404 (492) +.++.++++++++.+|+.+|.+|++++..||++ +||+||++++.+|.+||+++++.|+.+|++++++++++.+.. T Consensus 302 ~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~ 381 (486) T protein:vir:42 302 SAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMKGGD 381 (486) T ss_pred cccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC Confidence 566789999999999999999999999888754 699999999999999999999999999999999999987643 Q ss_pred --CcceeeeEEeCCCCCcCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhh-ccccCCCC Q lcl|Aclame:pro 405 --GEHKDVDISFNYNKVANTELQVQTAQQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQL-PNLDDGGA 477 (492) Q Consensus 405 --~~~~~i~i~f~~~~p~d~~e~~~~~~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~-~~~~~~~~ 477 (492) .+..+++++|+++.|+|.++.+++++|++ |++|+||+++++|+++|+.+||+|+++|+.+..... ....+... T Consensus 382 ~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e~~~~~~e~~~~~~~~~~~~~~~~~ 461 (486) T protein:vir:42 382 VPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREEMRRWDEEEAAMGLGLLGTMVDADP 461 (486) T ss_pred ccccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCC Confidence 35678999999999999999999999985 789999999999999999999999988876543332 21111111 Q ss_pred CCCCcCCCCCCCCCC Q lcl|Aclame:pro 478 DSAQQQERSNNKESE 492 (492) Q Consensus 478 ~~~~~~~~~~~~~~e 492 (492) ....+....++..++ T Consensus 462 ~~~~~~~~~~~~~~~ 476 (486) T protein:vir:42 462 TVPGSPSPTAPPKPQ 476 (486) T ss_pred CCCCCCCCCCCCCCC Confidence 111111111111111 No 43 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=100.00 E-value=2.5e-79 Score=451.47 Aligned_cols=436 Identities=12% Similarity=0.106 Sum_probs=336.0 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee Q lcl|Aclame:pro 42 PETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 121 (492) Q Consensus 42 ~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 121 (492) -....++|.+++++|..+++|++++.+||+|+|++.+...... ....++|+++||+++||++.++|+++++++. T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~------~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~ 74 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAP------PELAYLDVQPGWVATYLRTLSDRLDIEGFRI 74 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccccc------hhhhhhhhhcchHHHHHHHHHhhhccCceec Confidence 2233567899999999999999999999999998865543322 2234678999999999999999999999875 Q ss_pred cCCchhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEEEEEEe------CCCCceEEEEEcccceEEEecCCCCCceEEE Q lcl|Aclame:pro 122 KHTDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYL------DEEGEFKLFRVPAEQGIPIWTDKEHEELEAF 194 (492) Q Consensus 122 ~~~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~------d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 194 (492) .. +++..+.++.+| .|+++.++.++++++++||+||++||. +++|.+++++++|.+++++||+...+++.++ T Consensus 75 ~~-d~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~~i~D~~~~~~~~~~ 153 (480) T protein:vir:78 75 SE-DSEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMYAELDPRNTRRVTRA 153 (480) T ss_pred CC-CchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceEEEEcCCCccceEEE Confidence 44 444555555554 689999999999999999999999996 4678999999999999999999889999999 Q ss_pred EEeeeeccc----eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-----CCCCcHHH- Q lcl|Aclame:pro 195 IRMYKLENE----TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-----LEISDIFM- 264 (492) Q Consensus 195 i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-----~~~s~~~~- 264 (492) +++|...+. ..+++|++..+++|....+... ......+..+|+||.||||+|+|+. +|+|+++. T Consensus 154 i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~ 227 (480) T protein:vir:78 154 VRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLND------QWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPE 227 (480) T ss_pred EEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcc------cccccccccccCCCCcceEEeecccccCCccCccchhHH Confidence 999865432 4578899888887765543211 1113345678999999999999875 58899985 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHH--hh-hhccceecCCCCcceeeecccCHHHHHHHHHHH Q lcl|Aclame:pro 265 YKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKR--LL-RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDEL 341 (492) Q Consensus 265 v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~-~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l 341 (492) |++|+|+||+++|++++.++++++|+++++|.+.+...+... .+ .....+...+++++++.+++ .+..+++++++ T Consensus 228 i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 305 (480) T protein:vir:78 228 LRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTTLDIYYGRILTLASEAAKISEFK--AAELRNFAEEM 305 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhCCCccccccccccchhhhhhhhhccCCCCCceEEecC--ccCHHHHHHHH Confidence 999999999999999999999999999999976543221111 11 11222334456778887654 45678899999 Q ss_pred HHHHHHHhCCCCCCccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--cceeeeEEeC Q lcl|Aclame:pro 342 YQKIMLFGQAVDFSSDKFGSA----PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG--EHKDVDISFN 415 (492) Q Consensus 342 ~~~i~~~a~~p~~~~~~~~~~----~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~--~~~~i~i~f~ 415 (492) +..|+.++++|++++..||++ +||+||++++.+|..||.++++.|+.+|++++++++.+.+... +...++++|+ T Consensus 306 ~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~ 385 (480) T protein:vir:78 306 EVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYTRLETVWR 385 (480) T ss_pred HHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEec Confidence 999999999999888888753 7999999999999999999999999999999999999988543 5678999999 Q ss_pred CCCCcCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HhhccccCCCCCCC-CcCCCCCCC Q lcl|Aclame:pro 416 YNKVANTELQVQTAQQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTEYN-KQLPNLDDGGADSA-QQQERSNNK 489 (492) Q Consensus 416 ~~~p~d~~e~~~~~~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 489 (492) ++.|+|.++.+++++|++ |++|++|+++++|+++|+.+||+++++++.+.. .++.....+.++.. +++....++ T Consensus 386 ~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (480) T protein:vir:78 386 DPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKT 465 (480) T ss_pred CCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCCCCCCCC Confidence 999999999999999874 368999999999999999999988877766543 22222211111111 111111111 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) +.+ T Consensus 466 ~~~ 468 (480) T protein:vir:78 466 ETQ 468 (480) T ss_pred ccC Confidence 111 No 44 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=100.00 E-value=4.4e-79 Score=450.17 Aligned_cols=436 Identities=12% Similarity=0.104 Sum_probs=335.3 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee Q lcl|Aclame:pro 42 PETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 121 (492) Q Consensus 42 ~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 121 (492) --...++|.+|+++|..+++|++++.+||+|+|++.+.+... +....++|+++||+++||++.++|+.+++++. T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~------~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~ 74 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGA------PPELAYLDVQPGWVATYLRTLSDRLDIEGFRI 74 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc------chhHhhhhhhcchHHHHHHHHHhhhccCceec Confidence 222345788899999999999999999999999876543322 23344678999999999999999999999875 Q ss_pred cCCchhHHHHHHHH-HhccHHHHHHHHHHHHHhcCeEEEEEEe------CCCCceEEEEEcccceEEEecCCCCCceEEE Q lcl|Aclame:pro 122 KHTDDEVVKRIDEV-LGNRFDDKLHSVLTGASNKGIEWLHPYL------DEEGEFKLFRVPAEQGIPIWTDKEHEELEAF 194 (492) Q Consensus 122 ~~~d~~~~~~l~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~------d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 194 (492) ..++ +..+.++.+ ..|+++.++.++++++++||+||++||. |++|.+++++++|.+++++||+...+++.++ T Consensus 75 ~~d~-~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p~~~~~~~D~~~~~~~~~~ 153 (480) T protein:vir:78 75 SEDS-EGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESPLYMYAELDPRNTRRVTRA 153 (480) T ss_pred CCCc-hhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcccceEEEEcCCCccceEEE Confidence 5444 444555544 4689999999999999999999999997 4578899999999999999999889999999 Q ss_pred EEeeeecc----ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-----CCCCcHHH- Q lcl|Aclame:pro 195 IRMYKLEN----ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-----LEISDIFM- 264 (492) Q Consensus 195 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-----~~~s~~~~- 264 (492) +++|...+ ...+++|+++.+.+|....+... ......+..+|+||.||||+|.|++ +|+|+|+. T Consensus 154 i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i~~~ 227 (480) T protein:vir:78 154 VRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLND------QWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPE 227 (480) T ss_pred EEEEEeecCCCceEEEEEEeCCeEEEEEecCCCcc------ccccccccccCCCCCcceEEeecccccCCccCcccchhh Confidence 99986533 24577899988888776543211 1122345678999999999999874 68899985 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHH--hhh-hccceecCCCCcceeeecccCHHHHHHHHHHH Q lcl|Aclame:pro 265 YKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKR--LLR-YYGAIKVSDNGGVDTIQVEVPVENSKKYLDEL 341 (492) Q Consensus 265 v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~-~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l 341 (492) |++|+|+||+++|++++.++++++|+++++|.+.+...+-.. .+. ....+...+++++++.+++ ....+++++++ T Consensus 228 v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 305 (480) T protein:vir:78 228 LRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTTLDIYYGRILTLASEAAKISEFK--AAELRNFAEEM 305 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhcCCccccccccccchhhhhhhhhccCCCCCceEEecC--ccCHHHHHHHH Confidence 999999999999999999999999999999986543322111 111 1223334456788887654 45678889999 Q ss_pred HHHHHHHhCCCCCCccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CcceeeeEEeC Q lcl|Aclame:pro 342 YQKIMLFGQAVDFSSDKFGSA----PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK--GEHKDVDISFN 415 (492) Q Consensus 342 ~~~i~~~a~~p~~~~~~~~~~----~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~--~~~~~i~i~f~ 415 (492) +..|+.++.+|++++..||++ +||+||++++.+|..||.++++.|+.+|++++++++.+.|.. .+...++++|+ T Consensus 306 ~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Alk~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~~~~~~~~i~v~f~ 385 (480) T protein:vir:78 306 EVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYTRLETVWR 385 (480) T ss_pred HHHHHHHhcccCCChHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEec Confidence 999999999888888777643 799999999999999999999999999999999999998854 35678999999 Q ss_pred CCCCcCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHH-HhhccccCCCCCCCCcCCCCCC-C Q lcl|Aclame:pro 416 YNKVANTELQVQTAQQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTEYN-KQLPNLDDGGADSAQQQERSNN-K 489 (492) Q Consensus 416 ~~~p~d~~e~~~~~~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~ 489 (492) ++.|+|.++.+++++|+. |++|++|+++++|+++|+.++|+++++|+.+.. ..+.......++....++..++ . T Consensus 386 ~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (480) T protein:vir:78 386 DPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKT 465 (480) T ss_pred CCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCC Confidence 999999999999999873 479999999999999998888888777665433 3333222222111111111111 1 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) +.+ T Consensus 466 ~~~ 468 (480) T protein:vir:78 466 ETQ 468 (480) T ss_pred ccc Confidence 111 No 45 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=100.00 E-value=2.4e-79 Score=451.63 Aligned_cols=441 Identities=12% Similarity=0.084 Sum_probs=331.3 Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 32 FDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 32 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~ 111 (492) +........+.+....++..++++|..+++|++++.+||+|+|++.+.+.... ...+++|+++||+++||++.+ T Consensus 1 ~~~~i~~~~~~~~~~~~~~~L~~~~~~~~~r~~~~~~YY~G~~~i~~~~~~~~------~~~~~~~~~~n~~~~ivd~~~ 74 (485) T protein:vir:24 1 MTAPLPGQEEIADPAIARDEMVSAFEDQNQNLRSNTSYYEAERRPEAIGVTVP------VQMQSLLAHVGYPRLYVDSIA 74 (485) T ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCcccc------hhhhhhhhccchHHHHHHHHh Confidence 21211222234455667778999999999999999999999998865543322 223467889999999999999 Q ss_pred HhhhcCCeeecCCchhHHHHHH-HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCC--------CceEEEEEcccceEEE Q lcl|Aclame:pro 112 SYIVGKPIAFKHTDDEVVKRID-EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEE--------GEFKLFRVPAEQGIPI 182 (492) Q Consensus 112 ~~l~g~~~~~~~~d~~~~~~l~-~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~--------g~~~i~~~~p~~~~~i 182 (492) +||++++++...+ +...+.++ .|..|+++..+.++++++++||+||++||.+++ +.++++.++|++++++ T Consensus 75 ~~l~~~g~~~~~~-~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i 153 (485) T protein:vir:24 75 ERQAVEGFRLGDA-DEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAE 153 (485) T ss_pred hhhccCceecCCC-chhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEE Confidence 9999999875543 44444444 455689999999999999999999999999865 5578999999999999 Q ss_pred ecCCCCCceEEEEEeeeeccc---eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc--- Q lcl|Aclame:pro 183 WTDKEHEELEAFIRMYKLENE---TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND--- 256 (492) Q Consensus 183 ~d~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~--- 256 (492) ||+.. +++.+++++|...+. ..+++|+...+++|....+ .+......+|+||.||||+|.|++ T Consensus 154 ~D~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~----------~~~~~~~~~h~~g~vPvv~f~n~~~~~ 222 (485) T protein:vir:24 154 IDPRI-GRPAKAIRVAYDAEGNEIQAATLYTPNETFGWFRAEG----------EWVEWFSDPHGLGAVPVVPLPNRTRLS 222 (485) T ss_pred eeCCc-CceeEEEEEEEeecCCeEEEEEEEcCCcEEEEEecCC----------ceEeecccccCCCcccEEEeccCcccC Confidence 99765 567777666554432 3567888887777654332 233445678999999999999975 Q ss_pred --CCCCcHH-HHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhH----Hhhh-hccceecCCCCcceeeecc Q lcl|Aclame:pro 257 --LEISDIF-MYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFK----RLLR-YYGAIKVSDNGGVDTIQVE 328 (492) Q Consensus 257 --~~~s~~~-~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~~~-~~~~~~~~~~~d~~~l~~~ 328 (492) +|.|+++ .|++|+|+||+++|++++.++++++|+++++|.+.+...... ..+. ....+...+++++++.+ T Consensus 223 ~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q-- 300 (485) T protein:vir:24 223 DLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQTLFDAYLARILAFEDAEGKIQQ-- 300 (485) T ss_pred CcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCccccccccccccchhhhcccceeccCCCCceEEe-- Confidence 5889998 599999999999999999999999999999997654322111 1111 12223344556777754 Q ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCCCccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 329 VPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA----PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK 404 (492) Q Consensus 329 ~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~----~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 404 (492) .+.+++++++++|+..|+.++++|++++..||++ +||+||++++.+|.+||+++++.|+.+|++++++++.+.+.. T Consensus 301 ~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~ 380 (485) T protein:vir:24 301 FSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKGG 380 (485) T ss_pred ecccchHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 5567789999999999999999999999888754 799999999999999999999999999999999999886543 Q ss_pred ---CcceeeeEEeCCCCCcCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhh-ccccC-- Q lcl|Aclame:pro 405 ---GEHKDVDISFNYNKVANTELQVQTAQQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQL-PNLDD-- 474 (492) Q Consensus 405 ---~~~~~i~i~f~~~~p~d~~e~~~~~~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~-~~~~~-- 474 (492) .+..+++++|+++.|+|.++.+++++|++ |++|+||+++++|+++|+.+||+++++|+.+..... ....+ T Consensus 381 ~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e~~~~~ee~~~~~~~~~~~~~~~~ 460 (485) T protein:vir:24 381 DVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLLGTMVDAD 460 (485) T ss_pred CCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHHHHHHHHHHhhhhhhHHHhhcccC Confidence 45678999999999999999999999984 579999999999999998899999888775432211 11111 Q ss_pred ----CCCCCCCcCC-CCCCCCCC Q lcl|Aclame:pro 475 ----GGADSAQQQE-RSNNKESE 492 (492) Q Consensus 475 ----~~~~~~~~~~-~~~~~~~e 492 (492) +.++..++++ +...+..+ T Consensus 461 ~~~~~~~~~~e~~~~~~~~~~~~ 483 (485) T protein:vir:24 461 PTVPGSPNPTPAPKPQPAIEGGD 483 (485) T ss_pred CCCCCCCCCCCCCCCccCCCCCC Confidence 1111111100 00011111 No 46 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=100.00 E-value=8e-78 Score=443.26 Aligned_cols=437 Identities=11% Similarity=0.054 Sum_probs=333.5 Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhc Q lcl|Aclame:pro 37 RTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVG 116 (492) Q Consensus 37 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g 116 (492) +...+.....++|.+|+++|..+++|++++.+||+|+|++.+.+.... ....++|+++||+++||++.+++++. T Consensus 1 ~~~~~~~d~~~~i~~L~~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~------~~~~~~~~~~n~~~~ivd~~a~~l~~ 74 (488) T protein:vir:23 1 MAETESIDPEKLRDQLLDAFENKQNELKSSKAYYDAERRPDAIGLAVP------LDMRKYLAHVGYPRTYVDAIAERQEL 74 (488) T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcCcccc------hhhhhhhhhcchHHHHHHHHHHhhhc Confidence 333334445678999999999999999999999999999876554322 22346789999999999999988876 Q ss_pred CCeeec---------CCchhHHHHHHH-HHhccHHHHHHHHHHHHHhcCeEEEEEEeC--------CCCceEEEEEcccc Q lcl|Aclame:pro 117 KPIAFK---------HTDDEVVKRIDE-VLGNRFDDKLHSVLTGASNKGIEWLHPYLD--------EEGEFKLFRVPAEQ 178 (492) Q Consensus 117 ~~~~~~---------~~d~~~~~~l~~-~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d--------~~g~~~i~~~~p~~ 178 (492) +++.+. +++++..+.++. |..|+++.++.++++++++||+||++||.+ +++.+++++++|++ T Consensus 75 ~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~ 154 (488) T protein:vir:23 75 EGFRIPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEVPLIRVEPPTA 154 (488) T ss_pred cceeccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCcceEEEeccce Confidence 666542 234455555554 556899999999999999999999999874 45678999999999 Q ss_pred eEEEecCCCCCceEEEEEeeeeccc---eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCc Q lcl|Aclame:pro 179 GIPIWTDKEHEELEAFIRMYKLENE---TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN 255 (492) Q Consensus 179 ~~~i~d~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn 255 (492) ++++||+. .+++.+++++|...+. ...++|++..+++|....+ ++......+|+||.||||+|.|+ T Consensus 155 ~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~----------~~~~~~~~~h~~g~vPvv~f~n~ 223 (488) T protein:vir:23 155 LYAEVDPR-TRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEG----------EWEAPTSTPHGLEMVPVIPISNR 223 (488) T ss_pred eEEEEecC-CCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCC----------ceEeccccccCCCCcceEEeccc Confidence 99999965 5578888887765433 3456788777766653332 34455567899999999999987 Q ss_pred c-----CCCCcHH-HHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhH------HhhhhccceecCCCCcce Q lcl|Aclame:pro 256 D-----LEISDIF-MYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFK------RLLRYYGAIKVSDNGGVD 323 (492) Q Consensus 256 ~-----~~~s~~~-~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~d~~ 323 (492) + +|+|+++ .|++|+|+||+++|++++.++++++|+++++|.+.+...... -......++.++++++++ T Consensus 224 ~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~ 303 (488) T protein:vir:23 224 TRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLIFGAKPEELGINAETGQRMFDAYMARILAFEGGEGAH 303 (488) T ss_pred cccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCCCcccccccccccchhhhhhhhhhccCCCCCCce Confidence 5 5889997 599999999999999999999999999999997654322111 112234455667777788 Q ss_pred eeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 TIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA----PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFE 399 (492) Q Consensus 324 ~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~----~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 399 (492) +.++ +..+.++++++|+.+|+.++.+|++++..||++ +||+||++++++|..||+++++.|+.+|++++++++. T Consensus 304 ~~q~--~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~ 381 (488) T protein:vir:23 304 AEQF--SAAELRNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYK 381 (488) T ss_pred eEec--CCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 7654 456789999999999999999999988877643 6999999999999999999999999999999999999 Q ss_pred HhccC---CcceeeeEEeCCCCCcCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHH-HHhhcc Q lcl|Aclame:pro 400 HFDIK---GEHKDVDISFNYNKVANTELQVQTAQQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTEY-NKQLPN 471 (492) Q Consensus 400 ~~~~~---~~~~~i~i~f~~~~p~d~~e~~~~~~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~-~~~~~~ 471 (492) +.+.. .+..+++++|+++.|+|.++.+++++|++ |++|+||+++++|+++|+.+||+++++|+.+. ...+.. T Consensus 382 ~~~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~~~~~~~~~~~~~~~~~~~ 461 (488) T protein:vir:23 382 MVKGGDIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQMRQWLEQDQKQGLGLIGS 461 (488) T ss_pred HhcCCCcchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHH Confidence 88754 35578999999999999999999999984 47999999999999999999999987665432 222222 Q ss_pred ccCCC----CCCCCcCCCCCCCCCC Q lcl|Aclame:pro 472 LDDGG----ADSAQQQERSNNKESE 492 (492) Q Consensus 472 ~~~~~----~~~~~~~~~~~~~~~e 492 (492) ....+ ..+..+.....++++. T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~e~~ 486 (488) T protein:vir:23 462 LYGASTPEGKPGEAPVGEPPAPEPD 486 (488) T ss_pred HhccCCCcccCCCCCCCCCCCCCCC Confidence 21111 1111111122222222 No 47 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=100.00 E-value=2.5e-77 Score=440.57 Aligned_cols=452 Identities=13% Similarity=0.057 Sum_probs=329.4 Q ss_pred HHHHHHHHhhc----------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccc-c Q lcl|Aclame:pro 28 QTEIFDAIVRT----------NNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPD-D 96 (492) Q Consensus 28 ~~~~~~~~~~~----------~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~-~ 96 (492) +++.++.+... ..+++.+.+++.+++.+|..+++|++++++||+|+|+++..+.... +..+.. . T Consensus 1 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~~~~~~~~~-----~~~~~~~~ 75 (501) T protein:vir:25 1 MTVPVDVIADAPAADVEFPEDSMSREQLGALVADMWRLHISERQWLDRIYEYTKGLRGRPEVPEGAS-----DEVKELAK 75 (501) T ss_pred CcccchhhhccCcccccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhccccCC-----hhhhhhHh Confidence 34444444321 1245667788999999999999999999999999998755443322 223333 3 Q ss_pred ccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHH-HHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 97 RMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDE-VLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVP 175 (492) Q Consensus 97 ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~-~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~ 175 (492) ++++||+++||++.++|++.++++. .+++..+.+.. |..|+++..+.++++++++|||||++||.+++| +++++++ T Consensus 76 ~~v~n~~~~ivd~~a~~l~~~gf~~--~d~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de~~-~~i~~~s 152 (501) T protein:vir:25 76 LSVKNVLSLVRDSFAQNLSVVGYRN--ALAKENDPAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTDEG-PVFRTRS 152 (501) T ss_pred hhhcChHHHHHHHHHhhhcccceec--CCccchHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCC-CeEEEec Confidence 5678999999999999998777654 33333444444 456999999999999999999999999999987 6899999 Q ss_pred ccceEEEecCCC-CCceEEEEEeeeecc----ceeEEEEecceEEEEEEecceeeeccc-----------cccccccccc Q lcl|Aclame:pro 176 AEQGIPIWTDKE-HEELEAFIRMYKLEN----ETKVEYWDKVTVNYYVYENGSLIPDYS-----------NNLENSKTHF 239 (492) Q Consensus 176 p~~~~~i~d~~~-~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 239 (492) |++++++|+|+. ++.+.+++++|.... ...+++|++..++++............ ......+... T Consensus 153 p~~~~~iy~D~~~~~~~~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (501) T protein:vir:25 153 PRQILAVYADPSVDAWPQYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGA 232 (501) T ss_pred cccEEEEEecCCCCcceeEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeecccccccccccccccccccccccc Confidence 999999997654 557999999886543 345678887766655432221111110 0111223455 Q ss_pred eeccCCccceEeecCc----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhcccee Q lcl|Aclame:pro 240 STGSWGKIPFIPFKNN----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIK 315 (492) Q Consensus 240 ~~~~~g~iPvv~~~nn----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 315 (492) .+|+||.||||+|.|+ .+|+|+|++|++|+|+||+++|++++.++++++|+++++|++.+..+.+. ...++++. T Consensus 233 ~~~~~~~vPiv~f~N~~~~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~--~~~~~i~~ 310 (501) T protein:vir:25 233 TFEGKPVCPVVRFVNGRDADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISGWTGSKAEVLK--ASALRVWT 310 (501) T ss_pred ccCCccceeeEeccCccccCccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhCCCCCccchhh--hcccceec Confidence 6899999999999994 46899999999999999999999999999999999999999877665543 33344444 Q ss_pred cCCCCcceeeecc-cCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 316 VSDNGGVDTIQVE-VPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELL 394 (492) Q Consensus 316 ~~~~~d~~~l~~~-~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~ 394 (492) + +++++++.+.+ .+.+++..+++.+..+|+..|++|+.+++.+++|+||+||++++.+|.+|+.++++.|+.+|++++ T Consensus 311 ~-~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~ 389 (501) T protein:vir:25 311 F-EDPEVKAQAFPPASVEPYNLILEEMLQHVAMVAQISPAQVTGKMINVSAEALAAAEANQQRKLAAKRESFGESWEQLL 389 (501) T ss_pred c-CCCCceEEEecccChHHHHHHHHHHHHHHHhhcCCChhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4 56678877654 345666677777777777778888888887788999999999999999999999999999999999 Q ss_pred HHHHHHhccCC--cceeeeEEeCCCCCcCHHHHHHHHHHHhcc-CChHHHHHhCCCCCCHHHHHHHHHHHHHHHHH--hh Q lcl|Aclame:pro 395 WFVFEHFDIKG--EHKDVDISFNYNKVANTELQVQTAQQSMGI-VSHETVLENHPFVEDLQAELERIEQEQTEYNK--QL 469 (492) Q Consensus 395 ~li~~~~~~~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~-vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~--~~ 469 (492) ++++.+.+... +..+++++|+++.|+|.++.+++++|+.|+ ||.+|++.++|++++++ ++++++++++... .+ T Consensus 390 rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gis~et~~~~~~g~~~~~--ie~~~~~~~e~~~~~~~ 467 (501) T protein:vir:25 390 RLAAEMDDDPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGIPIEHLLSMVPGMTQQT--IQAIKDSLRGGEVKSLV 467 (501) T ss_pred HHHHHHhCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCHHHHHHHcCCCCHHH--HHHHHHHHHHHhHHHHH Confidence 99999998654 346789999999999999999999999876 89999999999998644 3444433322111 11 Q ss_pred ccc---c-CCCCCCCCcC----CCCCCCCCC Q lcl|Aclame:pro 470 PNL---D-DGGADSAQQQ----ERSNNKESE 492 (492) Q Consensus 470 ~~~---~-~~~~~~~~~~----~~~~~~~~e 492 (492) ... . .+......+. +.++...++ T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (501) T protein:vir:25 468 DKLLSNEPAPVPPPPPQAAAQALNEGGVNGN 498 (501) T ss_pred HHhhccCcCCCCCCCCCCCccccccccCCCC Confidence 111 1 0111111111 011111111 No 48 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=100.00 E-value=5.6e-77 Score=438.62 Aligned_cols=433 Identities=11% Similarity=0.013 Sum_probs=318.6 Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCe Q lcl|Aclame:pro 40 NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPI 119 (492) Q Consensus 40 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~ 119 (492) -++....++|.+++++|..+++|++++++||+|+|++++.++.... .....++|+++||+++||++.++|++|+|+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~----~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~ 76 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccCh----hhhhhhhhhhcchHHHHHHHHHhhhccCCe Confidence 3344445778899999999999999999999999988765544322 223346789999999999999999999999 Q ss_pred eecCCc-hhHHH-HHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEe Q lcl|Aclame:pro 120 AFKHTD-DEVVK-RIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRM 197 (492) Q Consensus 120 ~~~~~d-~~~~~-~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 197 (492) ++.+.+ .+..+ .++.|..|+++..+.++++++++||+||++||.+++|.+++++++|.+++++||+...+.+.+++++ T Consensus 77 ~~~~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) T protein:vir:10 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) T ss_pred ecCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEE Confidence 997653 33333 4445556899999999999999999999999999999999999999999999999988999999999 Q ss_pred eeeccce--eEEEEecceEEE-EEEe----cceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHH Q lcl|Aclame:pro 198 YKLENET--KVEYWDKVTVNY-YVYE----NGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLID 270 (492) Q Consensus 198 ~~~~~~~--~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD 270 (492) |...+.. ...+|...++.. +... .............+......+|.+|.||||+| +|++|+|+|+++++|+| T Consensus 157 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~-~N~~g~gd~e~vi~liD 235 (456) T protein:vir:10 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDIIN 235 (456) T ss_pred EEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEe-cCCCCCchhhhhHHHHH Confidence 9865543 334444433322 2110 11111111112233344556789999999887 57899999999999999 Q ss_pred HHHHHHHHHHHHHHhcCCceEEEecCCcccc--hhhH------Hhh--hhccceecCCCCcceeeecccCHHHHHHHHHH Q lcl|Aclame:pro 271 AYNRRLSDLSNTFKDSNELTYVLKNYDDQEL--PEFK------RLL--RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 340 (492) Q Consensus 271 ~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~--~~~~------~~~--~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~ 340 (492) +||+++|++++..+++++|+++++|.+.... .+.. ... ....++..+++.++..+ .+.+.+++...++. T Consensus 236 a~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~l~~ 314 (456) T protein:vir:10 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSAIKE 314 (456) T ss_pred HHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCCcceEEe-cccChhHHHHHHHH Confidence 9999999999999999999999999643221 1111 011 12233444555444333 23444555555665 Q ss_pred HHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCc Q lcl|Aclame:pro 341 LYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVA 420 (492) Q Consensus 341 l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~ 420 (492) +..+|+..+++|+..++.+++|+||+||++++.+|++|+..+++.|+.+|++++++++.+.|.. +..+++++|+++.|+ T Consensus 315 ~i~~~~~~s~~p~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~-~~~~~~v~w~~~~~~ 393 (456) T protein:vir:10 315 HIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESPDRV 393 (456) T ss_pred HHHHHHhccCCChHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cccceeEEecCCCCc Confidence 6566666666666666666678999999999999999999999999999999999999988854 345799999999999 Q ss_pred CHHHHHHHHHHHh--ccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCCC Q lcl|Aclame:pro 421 NTELQVQTAQQSM--GIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQ 481 (492) Q Consensus 421 d~~e~~~~~~k~~--g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 481 (492) |.++.+|+++|+. |++|.+++++++|++++ .++|++|+++|...........+. .++.. T Consensus 394 ~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~~~~~~~~~~~~--~~~~~ 456 (456) T protein:vir:10 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQ--EDGSR 456 (456) T ss_pred CHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhcCC--CCCCC Confidence 9999999999985 78999999999998754 446788877776543222111111 11111 No 49 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=100.00 E-value=5.6e-77 Score=438.62 Aligned_cols=433 Identities=11% Similarity=0.013 Sum_probs=318.6 Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCe Q lcl|Aclame:pro 40 NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPI 119 (492) Q Consensus 40 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~ 119 (492) -++....++|.+++++|..+++|++++++||+|+|++++.++.... .....++|+++||+++||++.++|++|+|+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~----~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~ 76 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccCh----hhhhhhhhhhcchHHHHHHHHHhhhccCCe Confidence 3344445778899999999999999999999999988765544322 223346789999999999999999999999 Q ss_pred eecCCc-hhHHH-HHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEe Q lcl|Aclame:pro 120 AFKHTD-DEVVK-RIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRM 197 (492) Q Consensus 120 ~~~~~d-~~~~~-~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 197 (492) ++.+.+ .+..+ .++.|..|+++..+.++++++++||+||++||.+++|.+++++++|.+++++||+...+.+.+++++ T Consensus 77 ~~~~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 156 (456) T protein:vir:10 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRAAMRW 156 (456) T ss_pred ecCCCCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEEccceeEEEEcCCCCcceEEEEEE Confidence 997653 33333 4445556899999999999999999999999999999999999999999999999988999999999 Q ss_pred eeeccce--eEEEEecceEEE-EEEe----cceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHH Q lcl|Aclame:pro 198 YKLENET--KVEYWDKVTVNY-YVYE----NGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLID 270 (492) Q Consensus 198 ~~~~~~~--~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD 270 (492) |...+.. ...+|...++.. +... .............+......+|.+|.||||+| +|++|+|+|+++++|+| T Consensus 157 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~-~N~~g~gd~e~vi~liD 235 (456) T protein:vir:10 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDIIN 235 (456) T ss_pred EEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEe-cCCCCCchhhhhHHHHH Confidence 9865543 334444433322 2110 11111111112233344556789999999887 57899999999999999 Q ss_pred HHHHHHHHHHHHHHhcCCceEEEecCCcccc--hhhH------Hhh--hhccceecCCCCcceeeecccCHHHHHHHHHH Q lcl|Aclame:pro 271 AYNRRLSDLSNTFKDSNELTYVLKNYDDQEL--PEFK------RLL--RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 340 (492) Q Consensus 271 ~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~--~~~~------~~~--~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~ 340 (492) +||+++|++++..+++++|+++++|.+.... .+.. ... ....++..+++.++..+ .+.+.+++...++. T Consensus 236 a~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~~~~~l~~ 314 (456) T protein:vir:10 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAAPGALWELPPGVDIWES-QANDFTPMLSAIKE 314 (456) T ss_pred HHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhhccccccCCCCcceEEe-cccChhHHHHHHHH Confidence 9999999999999999999999999643221 1111 011 12233444555444333 23444555555665 Q ss_pred HHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCc Q lcl|Aclame:pro 341 LYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVA 420 (492) Q Consensus 341 l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~ 420 (492) +..+|+..+++|+..++.+++|+||+||++++.+|++|+..+++.|+.+|++++++++.+.|.. +..+++++|+++.|+ T Consensus 315 ~i~~~~~~s~~p~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~-~~~~~~v~w~~~~~~ 393 (456) T protein:vir:10 315 HIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESPDRV 393 (456) T ss_pred HHHHHHhccCCChHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cccceeEEecCCCCc Confidence 6566666666666666666678999999999999999999999999999999999999988854 345799999999999 Q ss_pred CHHHHHHHHHHHh--ccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCCC Q lcl|Aclame:pro 421 NTELQVQTAQQSM--GIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQ 481 (492) Q Consensus 421 d~~e~~~~~~k~~--g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 481 (492) |.++.+|+++|+. |++|.+++++++|++++ .++|++|+++|...........+. .++.. T Consensus 394 ~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~~~~~~~~~~~~--~~~~~ 456 (456) T protein:vir:10 394 TLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPVQRPQ--EDGSR 456 (456) T ss_pred CHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhhhhhhcCC--CCCCC Confidence 9999999999985 78999999999998754 446788877776543222111111 11111 No 50 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=100.00 E-value=1.2e-76 Score=436.80 Aligned_cols=441 Identities=11% Similarity=0.065 Sum_probs=329.2 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) +++ -+ ....+.+....++..++++|..+++|++++.+||+|+|++.+.+.... ....++++++||+ T Consensus 1 ~~~----~i----~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~------~~~~~~~~~~n~~ 66 (485) T protein:vir:10 1 MTA----PL----PGQEEIEDPAIARDEMVSAFEDSTQNLKTNTSYYEAERRPEAIGVTVP------IQMQSLLAHVGYP 66 (485) T ss_pred CCC----CC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCCC------hhhhhhhhhcCcH Confidence 111 01 011235556678889999999999999999999999998865443322 2223567889999 Q ss_pred HHHHHHHHHhhhcCCeeecCCchhHHH-HHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCC--------CCceEEEEE Q lcl|Aclame:pro 104 ANLVDQKVSYIVGKPIAFKHTDDEVVK-RIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDE--------EGEFKLFRV 174 (492) Q Consensus 104 ~~ivd~~~~~l~g~~~~~~~~d~~~~~-~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~--------~g~~~i~~~ 174 (492) ++||++.++||++++++... +++..+ .++.|..|+|+.++.++++++++||+||++||.++ ++.++|+++ T Consensus 67 ~~ivd~~~~~l~~~g~~~~~-~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~ 145 (485) T protein:vir:10 67 RLYVDSIAERQAVEGFRFGD-ADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVE 145 (485) T ss_pred HHHHHHHHhhhcccceecCC-CchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEE Confidence 99999999999988887543 334444 44555578999999999999999999999999985 467889999 Q ss_pred cccceEEEecCCCCCceEEEEEeeeeccc---eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEe Q lcl|Aclame:pro 175 PAEQGIPIWTDKEHEELEAFIRMYKLENE---TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIP 251 (492) Q Consensus 175 ~p~~~~~i~d~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~ 251 (492) +|++++++||+.. +++.+++++|..... ..+++|++..+++|....+ ++......+|+||.||||+ T Consensus 146 ~p~~~~~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~----------~~~~~~~~~~~~g~vPvv~ 214 (485) T protein:vir:10 146 PPTRMYAEIDPRI-GRVSKAIRVAYDAEGNEIQAATLYTPNDIFGWYRVEN----------EWQEWFNNPHGLGVVPVVP 214 (485) T ss_pred ccceeEEEEcCCC-CceeEEEEEEEeeCCCeEEEEEEEeCCeEEEEEEcCC----------ceEEeccccCCCCcccEEE Confidence 9999999998654 556666666554332 3477888888877764332 2334456789999999999 Q ss_pred ecCcc-----CCCCcHHH-HHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhh----HHhhh-hccceecCCCC Q lcl|Aclame:pro 252 FKNND-----LEISDIFM-YKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEF----KRLLR-YYGAIKVSDNG 320 (492) Q Consensus 252 ~~nn~-----~~~s~~~~-v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~----~~~~~-~~~~~~~~~~~ 320 (492) |+|+. +|+|+|++ |++|||+||+++|++++.++++++|+++++|.+.+..... ....+ ....+...+++ T Consensus 215 ~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 294 (485) T protein:vir:10 215 IPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQTLFDAYLARILAFEDA 294 (485) T ss_pred eccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCcccccccccccchhhhhcccceeccCCC Confidence 99974 47899985 9999999999999999999999999999999765432211 11111 11223344567 Q ss_pred cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGS----APSGVALEFLYTNLNLKADKLARKAKVAIQELLWF 396 (492) Q Consensus 321 d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~----~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~l 396 (492) ++++.+ .+..++++++++++.+|+.++.+|++++..||+ ++||+||++++.+|..|++++++.|+.+|++++++ T Consensus 295 d~k~~q--~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l 372 (485) T protein:vir:10 295 EGKIQQ--FSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNSIFGGAWEEAMRL 372 (485) T ss_pred CceEEe--ecccchHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 788755 455678899999999999999999998888764 37999999999999999999999999999999999 Q ss_pred HHHHhccC---CcceeeeEEeCCCCCcCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHH-h Q lcl|Aclame:pro 397 VFEHFDIK---GEHKDVDISFNYNKVANTELQVQTAQQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTEYNK-Q 468 (492) Q Consensus 397 i~~~~~~~---~~~~~i~i~f~~~~p~d~~e~~~~~~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~-~ 468 (492) ++.+.+.. .+...++|+|+++.|+|.++.+++++|++ |++|+||+++++|+++|..++|+++++|+..... . T Consensus 373 ~~~~~~~~~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~~~~~ee~~~~~~~~ 452 (485) T protein:vir:10 373 AYRMMKGGDVPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGL 452 (485) T ss_pred HHHHhCCCCCcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHHHHHHHHHHHHHHHH Confidence 99887643 35578999999999999999999999984 4899999999999998888999998877654222 1 Q ss_pred h--ccccCCCCCCCCcCC-CCCCCCCC Q lcl|Aclame:pro 469 L--PNLDDGGADSAQQQE-RSNNKESE 492 (492) Q Consensus 469 ~--~~~~~~~~~~~~~~~-~~~~~~~e 492 (492) + ......+.+++.+.. +.+..+.+ T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (485) T protein:vir:10 453 IGTMVDPNPTVPGSPSPAPAPKPAALE 479 (485) T ss_pred HHHhhccCCCCCCCCCccccccCcCCC Confidence 1 111111111111111 11111111 No 51 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=100.00 E-value=4.8e-77 Score=438.98 Aligned_cols=441 Identities=12% Similarity=0.097 Sum_probs=320.0 Q ss_pred HHHHhhcCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHH Q lcl|Aclame:pro 32 FDAIVRTNNKPETLEEMI-VRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQK 110 (492) Q Consensus 32 ~~~~~~~~~~~~~~~~~l-~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~ 110 (492) |=++...+.+++.+.+.| .+++++|..+.+|++++.+||+|+|+|++.+..... ....+..+++++||+++||++. T Consensus 1 ~~~~p~~~l~~~~~~~~~~~~l~~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~---~~~~~~~~~~~~n~~~~iVd~~ 77 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYLETKVFPKMNTECERLDDFEAWTKNGQEVPDLATRHKN---KEREVLQQLSRKPWMGLMVNSF 77 (479) T ss_pred CccCCcccCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcccccccccCC---hhHHHHHHHhhcCcHHHHHHHH Confidence 111222344556666655 589999999999999999999999998766543221 2233445567889999999999 Q ss_pred HHhhhcCCeeecCCchhHHHHH-HHHHhccHHHHHHHHHHHHHhcCeEEEEEEe-----CCCCceEEEEEcccceEEEec Q lcl|Aclame:pro 111 VSYIVGKPIAFKHTDDEVVKRI-DEVLGNRFDDKLHSVLTGASNKGIEWLHPYL-----DEEGEFKLFRVPAEQGIPIWT 184 (492) Q Consensus 111 ~~~l~g~~~~~~~~d~~~~~~l-~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~-----d~~g~~~i~~~~p~~~~~i~d 184 (492) ++|++.++++ +.+.+..+.+ +.|..|+++..+.++++++++||+||++||. |++|.+++++++|++++++|+ T Consensus 78 ~~~l~~~gf~--~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~~i~~~~p~~~~~iyd 155 (479) T protein:vir:99 78 AQQLIVDGYR--KTGTNENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVARIKCIDPRDAFAIWE 155 (479) T ss_pred Hhhccccccc--CCCchhhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCceEEEEechhheEEEec Confidence 9999877755 4444444444 4455689999999999999999999999995 567889999999999999998 Q ss_pred CCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCc----cCCCC Q lcl|Aclame:pro 185 DKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN----DLEIS 260 (492) Q Consensus 185 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn----~~~~s 260 (492) ++..+... +..+.........+|+...++.|.... ..+......+|+||.||||+|.|+ ++|+| T Consensus 156 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~g~s 223 (479) T protein:vir:99 156 DPYWDEWP--KYLLERQPNGQYWWWTEEDYSIFEFKQ----------GKFIYRETVSHDYGHIPFVRYVNVMDLRGVCYG 223 (479) T ss_pred CCccccee--eEEEeecCceeEEEEecceEEEEEecC----------CceeeccccccCCCCcceEEeecCCCcCcCCcc Confidence 87654422 222333344556677766665554332 234455678999999999999998 57999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhH---HhhhhccceecCCCCcceeeecccCHHHHHHH Q lcl|Aclame:pro 261 DIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFK---RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKY 337 (492) Q Consensus 261 ~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 337 (492) +|+++++|+|+||+++|++++.++++++|+++++|....+..... ......+++. .+++++++.+ ++...++++ T Consensus 224 d~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~q--~~~~~~~~~ 300 (479) T protein:vir:99 224 DVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEGANADQEKMRFAQESMLI-SQNEKASFGA--IPAAPLDGL 300 (479) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCcccccccchhcccccccccee-ecCCCceEEE--ecccchHHH Confidence 999999999999999999999999999999999997653322221 1223334443 4566778754 445668888 Q ss_pred HHHHHHHHHHHhCCCCCCccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--ceeeeEE Q lcl|Aclame:pro 338 LDELYQKIMLFGQAVDFSSDKFG--SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGE--HKDVDIS 413 (492) Q Consensus 338 i~~l~~~i~~~a~~p~~~~~~~~--~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~--~~~i~i~ 413 (492) +++++..|+.+++++++++..+| +|+||+||++++.+|..||..+++.|+.+|++++++++.+.+.... ..+++++ T Consensus 301 ~~~l~~~i~~i~~~t~~p~~~~g~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~~~~~~~i~~~ 380 (479) T protein:vir:99 301 LNAYKESLLEFLALAQLPPHIAGQIVNVAADALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTEEATDLDFTIT 380 (479) T ss_pred HHHHHHHHHHHhccCCCCHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEE Confidence 88888888888888777776664 6899999999999999999999999999999999999999987654 3568899 Q ss_pred eCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHH-HHHHHHHHHHHHHhhcccc---CC-----CCCCCCc Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAE-LERIEQEQTEYNKQLPNLD---DG-----GADSAQQ 482 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E-~~ri~~E~~~~~~~~~~~~---~~-----~~~~~~~ 482 (492) |.++.++|.++.+++++|+ +|++|+||+++++|++++++.| +++.++++.+..+...... +. +.++..+ T Consensus 381 w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~l~gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (479) T protein:vir:99 381 WQDVTIQSLAQFADAWAKMVESLKIPAEGVWDMIPNLDQSTVNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATN 460 (479) T ss_pred ecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCC Confidence 9999999999999999998 4789999999999999875522 3333333322221111111 10 1111111 Q ss_pred CCCCCCCCCC Q lcl|Aclame:pro 483 QERSNNKESE 492 (492) Q Consensus 483 ~~~~~~~~~e 492 (492) .+++++...+ T Consensus 461 ~~~~~~~~~~ 470 (479) T protein:vir:99 461 MQQANNKTGE 470 (479) T ss_pred CCCCCCCCcc Confidence 1111111111 No 52 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=100.00 E-value=4.6e-77 Score=439.11 Aligned_cols=441 Identities=11% Similarity=0.053 Sum_probs=328.8 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) ++ ..+ ...+.....+++..+++.+..+.+|++++.+||+|+|++.+..... +....+.++++||+ T Consensus 1 ~~----~~~-----~~~~~~~~~~~~~~l~~~~~~~~~rl~~l~~Yy~G~~~i~~~~~~~------~~~~~~~~~~~n~~ 65 (484) T protein:vir:77 1 MT----SPL-----QKQENVDPEKAREEMLNLFTERTQDLGDNTAYYESERRPDAVGVTV------PQQMQKLLAHVGYP 65 (484) T ss_pred CC----Ccc-----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccc------chhHHhhhhhcCcH Confidence 11 111 1222222234555666667777789999999999999876544332 12223456789999 Q ss_pred HHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc--------eEEEEEc Q lcl|Aclame:pro 104 ANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGE--------FKLFRVP 175 (492) Q Consensus 104 ~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~--------~~i~~~~ 175 (492) ++||++.++|+++++++...+++....+++.|..|+++..+.++++++++||+||++||.+++|. ++|++++ T Consensus 66 ~~ivd~~~~~l~~~g~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~ 145 (484) T protein:vir:77 66 RLYIDAIAARQELEGFRLGGADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEP 145 (484) T ss_pred HHHHHHHHhhhccCceecCCcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEec Confidence 99999999999999988655444444455556679999999999999999999999999998874 5799999 Q ss_pred ccceEEEecCCCCCceEEEEEeeeeccc---eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEee Q lcl|Aclame:pro 176 AEQGIPIWTDKEHEELEAFIRMYKLENE---TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPF 252 (492) Q Consensus 176 p~~~~~i~d~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~ 252 (492) |++++++||+. .+++.+++++|..++. ..+++|++..+.+|.... .++......+|+||.||||+| T Consensus 146 p~~~~~~~D~~-~~~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~----------~~~~~~~~~~~~~g~vPvv~f 214 (484) T protein:vir:77 146 PTNLYAQIDPR-TRQVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNRED----------GQWVQVANVAHNLEMVPVIPI 214 (484) T ss_pred cceeEEEecCC-CCceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecC----------CceEeeccccCCCCCcceEEe Confidence 99999999975 5789999998877543 345678877766654332 234445567899999999999 Q ss_pred cCcc-----CCCCcHH-HHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhH----Hhhhh-ccceecCCCCc Q lcl|Aclame:pro 253 KNND-----LEISDIF-MYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFK----RLLRY-YGAIKVSDNGG 321 (492) Q Consensus 253 ~nn~-----~~~s~~~-~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~~~~-~~~~~~~~~~d 321 (492) .|+. +|+|+|+ .|++|+|+||+++|++++..+++++|+++++|.+.+...... ..++. ...+...++++ T Consensus 215 ~N~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (484) T protein:vir:77 215 PNRTRLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVKGEELGVDPETGQTLFDAYLARILAFEDHE 294 (484) T ss_pred ccccccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCCcchhcccccccchhhhhhhhhhcccCCCC Confidence 9875 5899997 599999999999999999999999999999998654322111 11111 11222335567 Q ss_pred ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 322 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA----PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFV 397 (492) Q Consensus 322 ~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~----~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li 397 (492) +++. +++..+.++++++++.+|+.+|.+|++++..||++ +||+||++++.+|.+|++++++.|+.+|+++++++ T Consensus 295 ~~~~--q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~l~ 372 (484) T protein:vir:77 295 SKAQ--QFSAAELRNFVDALDALDRKAAAYTGLPPYYLSFSSENPASAEAIRSSESRLVKTVERKNKIFGGAWEQAMRVA 372 (484) T ss_pred ceeE--eecCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 7775 45566788999999999999999999988888754 79999999999999999999999999999999999 Q ss_pred HHHhccC---CcceeeeEEeCCCCCcCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHH-hh Q lcl|Aclame:pro 398 FEHFDIK---GEHKDVDISFNYNKVANTELQVQTAQQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTEYNK-QL 469 (492) Q Consensus 398 ~~~~~~~---~~~~~i~i~f~~~~p~d~~e~~~~~~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~-~~ 469 (492) +.+.+.. .+..+++++|+++.|+|.++.+++++|++ |++|++|+++++|+++|+.+||+++++|+..... .+ T Consensus 373 ~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~~~~ 452 (484) T protein:vir:77 373 YKVMNGGDIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQAQGLGLM 452 (484) T ss_pred HHHhCCCCcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH Confidence 9987653 34567999999999999999999999984 4899999999999999999999999888654332 22 Q ss_pred ccccCCC----CCC--CCcCCCCCCCCCC Q lcl|Aclame:pro 470 PNLDDGG----ADS--AQQQERSNNKESE 492 (492) Q Consensus 470 ~~~~~~~----~~~--~~~~~~~~~~~~e 492 (492) ....+.. +++ .+++++..+.+.+ T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (484) T protein:vir:77 453 GTMFGTDPSGGGNPDNPETPEPQPNPAEE 481 (484) T ss_pred hhhccccccCCCCCCCCCcccccCCCccc Confidence 2221111 111 1111111111111 No 53 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=100.00 E-value=2.9e-76 Score=434.75 Aligned_cols=421 Identities=14% Similarity=0.085 Sum_probs=324.5 Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCee Q lcl|Aclame:pro 41 KPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIA 120 (492) Q Consensus 41 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~ 120 (492) -......+|..++++|..+++|++++.+||+|+|++...+... ....+++|+++|||++||++.++|+.++++ T Consensus 1 ~~~~~~~~i~~l~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~------~~~~~~~k~~~n~~~~ivd~~~~~l~~~g~- 73 (441) T protein:vir:80 1 MNSDELALIEGMYDRIQRLSSWHCCIEGYYEGSNRVRDLGVAI------PPELQRVQTVVSWPGIAVDALEERLDWLGW- 73 (441) T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCccc------chhhhhhhhhcchHHHHHHHHHhhhccccc- Confidence 1222346788999999999999999999999999875544332 223357899999999999999999976665 Q ss_pred ecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeee Q lcl|Aclame:pro 121 FKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKL 200 (492) Q Consensus 121 ~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 200 (492) ++++++ ...+.|..|+++..+.+++++++++|+||++||.|++|.+++++++|++++++||+...+...++++++.. T Consensus 74 -~~~d~~--~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~ 150 (441) T protein:vir:80 74 -TNGDGY--GLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTVSVRPQSPKNCTGKFSADGSRLDAGLVVQQTC 150 (441) T ss_pred -cCCChH--HHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCceEEEEEccceEEEEEeCCCCceeEEEEEEEEe Confidence 444432 23334456899999999999999999999999999999999999999999999998766556665555544 Q ss_pred cc-ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-----CCCCcHH-HHHHHHHHHH Q lcl|Aclame:pro 201 EN-ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-----LEISDIF-MYKTLIDAYN 273 (492) Q Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-----~~~s~~~-~v~~liD~~~ 273 (492) .+ ...+++|++..+.+|..... ..+......+|+||.||||+|.|++ +|+|+|. .|++|+|+|| T Consensus 151 ~~~~~~~~vy~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~ 221 (441) T protein:vir:80 151 DPEVVEAELLLPDVIVQVERRGS---------REWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAV 221 (441) T ss_pred cCceEEEEEEecCeEEEEEEcCC---------cceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHH Confidence 33 34578888887776644332 2345567789999999999999875 4889886 5999999999 Q ss_pred HHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCccee-eecccCHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 274 RRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDT-IQVEVPVENSKKYLDELYQKIMLFGQAV 352 (492) Q Consensus 274 ~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~~~~~~~i~~l~~~i~~~a~~p 352 (492) .++|++++.++++++|+++++|.+.+............+++.++.+++.+. ..++.+.++.++++++++..|+.++.+| T Consensus 222 ~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ 301 (441) T protein:vir:80 222 RTLLGQSVNRDFYAYPQRWVTGVSADEFSQPGWVLSMASVWAVDKDDDGDTPNVGSFPVNSPTPYSDQMRLLAQLTAGEA 301 (441) T ss_pred HHHHHHHHHHHhhcCceeeeecCCccccccchhhhcccccccCCCCCCCCcceeEecCccchHHHHHHHHHHHHHHhccc Confidence 999999999999999999999987655444444455566666665443322 2245556678999999999999999999 Q ss_pred CCCccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----cceeeeEEeCCCCCcCHHH Q lcl|Aclame:pro 353 DFSSDKFGSA----PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG----EHKDVDISFNYNKVANTEL 424 (492) Q Consensus 353 ~~~~~~~~~~----~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~----~~~~i~i~f~~~~p~d~~e 424 (492) ++++..||++ .||+||++++.+|..||+++++.|+.+|++++++++.+.+... ...+++++|+++.|+|.++ T Consensus 302 ~~p~~~~g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~e 381 (441) T protein:vir:80 302 AVPERYFGFITSNPPSGEALAAEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDVGLRWRDASTPTRAA 381 (441) T ss_pred CCCHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeeeEEeCCCCCcCHHH Confidence 9887777643 5999999999999999999999999999999999999988654 3467899999999999999 Q ss_pred HHHHHHHHh--cc--CChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCC Q lcl|Aclame:pro 425 QVQTAQQSM--GI--VSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERS 486 (492) Q Consensus 425 ~~~~~~k~~--g~--vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (492) .+++++|+. |+ +|++|+++++|+++ .|++|+++|+++..+.+....+.. +.+.++- T Consensus 382 ~ad~~~kl~~~g~~~~s~~~~~~~l~~~~---~e~~~~~~e~~e~~~~~~~~~~~~---~~~~~~~ 441 (441) T protein:vir:80 382 TADAVTKLVGAGILPADSRTVLEMLGLDD---VQVEAVMRHRAESSDPLAVLAGAI---SRQTNEV 441 (441) T ss_pred HHHHHHHHHhcCcccccHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHhhhh---hcccccC Confidence 999999985 43 68899999999875 455566666555444333222211 1111111 No 54 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=100.00 E-value=3.8e-75 Score=428.55 Aligned_cols=430 Identities=12% Similarity=0.050 Sum_probs=316.2 Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCe Q lcl|Aclame:pro 40 NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPI 119 (492) Q Consensus 40 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~ 119 (492) .++....+++.+++.+|..+++|++++.+||+|+|++++.+..... +....++++++||+++||++.++|++|+|+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~----~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~ 76 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSA----AWRSFQREARTNWGLMVRDSVADRIIPNGI 76 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCcccCh----hhchhhhhhhcchHHHHHHHHHhhhccCCe Confidence 4444455678899999999999999999999999998765443322 222334567899999999999999999999 Q ss_pred eecCCch-hHHHHHHH-HHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEe Q lcl|Aclame:pro 120 AFKHTDD-EVVKRIDE-VLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRM 197 (492) Q Consensus 120 ~~~~~d~-~~~~~l~~-~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~ 197 (492) ++.+.++ +..+.++. |..|+++..+.++++++++||+||+++|.+++|.+++++++|.+++++||+...+.+.+++++ T Consensus 77 ~~~~~~d~~~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~ 156 (456) T protein:vir:79 77 TVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRRDDGTATITADSPETMVVSVDPLQPWRIRSAMRW 156 (456) T ss_pred ecCCCCCccHHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeCCCCceEEEEeccceeEEEEcCCCCCceEEEEEE Confidence 9876543 44444444 556899999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeccce--eEEEEecceEEEEEEec-----ceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHH Q lcl|Aclame:pro 198 YKLENET--KVEYWDKVTVNYYVYEN-----GSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLID 270 (492) Q Consensus 198 ~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD 270 (492) |...+.. ...+|....+.++.... ............+......+|.+|.||||+| +|+.|.|+|+++++||| T Consensus 157 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~-~N~~~~gd~e~v~~liD 235 (456) T protein:vir:79 157 WRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVY-QNPDGMGEVEPHIDIIN 235 (456) T ss_pred EEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEe-cCCCCCchhhhhHHHHH Confidence 9865543 34566666554432211 1111111122233444566899999999998 56889999999999999 Q ss_pred HHHHHHHHHHHHHHhcCCceEEEecCCcccch--hhH------Hhh--hhccceecCCCCcceeeecccCHHHHHHHHHH Q lcl|Aclame:pro 271 AYNRRLSDLSNTFKDSNELTYVLKNYDDQELP--EFK------RLL--RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 340 (492) Q Consensus 271 ~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~--~~~------~~~--~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~ 340 (492) +||+++|++++.++++++|++++.|....... +.. ... ..+.++..+++.++. +++..+.+.+++. T Consensus 236 ~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~~~~~~~~~~~~~~~~~~~~~~----q~~~~~~~~~~~~ 311 (456) T protein:vir:79 236 RINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDYASIFEAAPGALWELPPGVDIW----ESQTNDFTPMLSA 311 (456) T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccccccchhhhhhhhccccccCCCCccee----eecccChHHHHHH Confidence 99999999999999999999999997533211 100 011 122333444444432 3333444555555 Q ss_pred HHHHHHHHh---CCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCC Q lcl|Aclame:pro 341 LYQKIMLFG---QAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYN 417 (492) Q Consensus 341 l~~~i~~~a---~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~ 417 (492) ++..|+.++ ++|...++.+++|+||+||++++.+|.+|++.+++.|+++|++++++++.+.|.. +..+++++|+++ T Consensus 312 l~~~i~~i~~~t~~p~~~~~~~~~N~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~i~v~w~~~ 390 (456) T protein:vir:79 312 IKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGES-VEDTVDVSFESP 390 (456) T ss_pred HHHHHHHHHhhcCCChhHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccccceEEeCCC Confidence 555555555 5555555555568999999999999999999999999999999999999988865 446799999999 Q ss_pred CCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCCC Q lcl|Aclame:pro 418 KVANTELQVQTAQQSM--GIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQ 481 (492) Q Consensus 418 ~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 481 (492) .|+|.++.||+++|+. |++|.++++++++++++ .++|++|+++|......... ..+..++.. T Consensus 391 ~~~s~~~~ada~~kl~~~G~~~~~~~~~~lg~~~~~i~~~e~~r~~~e~~~~~~~~~--~~~~~~~~~ 456 (456) T protein:vir:79 391 DRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLFAGNPV--QRPQEDGSR 456 (456) T ss_pred CCcCHHHHHHHHHHHHhcCCChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhhHh--hcCCCCCCC Confidence 9999999999999984 78999999999988654 45677777776543322211 111111111 No 55 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=100.00 E-value=6.6e-72 Score=410.82 Aligned_cols=446 Identities=14% Similarity=0.137 Sum_probs=317.2 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) ++|-.+..-........-++....+|.+|+++|..+++|++++.+||+|+|.+.+.+..... ...++++++||+ T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p~------~~~~~~~v~n~~ 74 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIPP------EYLRTATVLGWS 74 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccchhccccccH------HHHHHhhccCcH Confidence 22211111111222222344446789999999999999999999999999987654433221 122557889999 Q ss_pred HHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc--eEEEEEcccceEE Q lcl|Aclame:pro 104 ANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGE--FKLFRVPAEQGIP 181 (492) Q Consensus 104 ~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~--~~i~~~~p~~~~~ 181 (492) ++||+++++++..++++...+++....+++.|..|+|+....++++++++|||||++||.+++|+ ++|++++|+++++ T Consensus 75 ~~iVd~~a~rl~~~Gf~~~d~~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~~ 154 (504) T protein:vir:99 75 AKAVDTLARRCNLESFVWPDGDYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQATG 154 (504) T ss_pred HHHHHHHHhhhccceeeCCCCChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeEE Confidence 99999999999999987654444444455556679999999999999999999999999998876 5688999999999 Q ss_pred EecCCCCCceEEEEEeeeeccc---eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-- Q lcl|Aclame:pro 182 IWTDKEHEELEAFIRMYKLENE---TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-- 256 (492) Q Consensus 182 i~d~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-- 256 (492) +||+. .+++.+++++|..+.. ..+++|++..++++..... +.+..+..+|++| ||||+|.|+. T Consensus 155 iyD~~-~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~----------~~~~~~~~~~~~g-vPvV~~~n~~~~ 222 (504) T protein:vir:99 155 EWNSR-RNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDD----------GDWHADVRTHKLG-VPVEVLPYKPRE 222 (504) T ss_pred EEeCC-CCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCC----------ceeeeccccCCCC-cceEEecccccC Confidence 99975 5677777776654333 2356888888777654432 2244566789998 9999999873 Q ss_pred ---CCCCcHH-HHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchh----hHH--hhhhccceecCCCC------ Q lcl|Aclame:pro 257 ---LEISDIF-MYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPE----FKR--LLRYYGAIKVSDNG------ 320 (492) Q Consensus 257 ---~~~s~~~-~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~----~~~--~~~~~~~~~~~~~~------ 320 (492) +|+|++. +|++|+|++|+++|++++..+++++|+++++|++.++... ... .....+++.+++++ T Consensus 223 ~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 302 (504) T protein:vir:99 223 DRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADAKNFRNKDGSMKPAWQIALARVFALPDDEDEPDAA 302 (504) T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCccccccccccccchhhhhhhhhhcCCCcccccccc Confidence 6889885 8999999999999999999999999999999986543211 111 12234555565543 Q ss_pred --cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 --GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-----SAPSGVALEFLYTNLNLKADKLARKAKVAIQEL 393 (492) Q Consensus 321 --d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-----~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~ 393 (492) ++++ ++++..++++|+++|+.+|+.++.++++++..|| +++||+||++++.+|..|+.++++.|+.+|+++ T Consensus 303 ~~~~~~--~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~~~~~L~~ka~~k~~~f~~~l~~~ 380 (504) T protein:vir:99 303 RARADV--KQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAYIASREDLIAEAEGATDDWSPAFRRS 380 (504) T ss_pred Ccccee--eecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2444 4556666778888888888888666655554443 678999999999999999999999999999999 Q ss_pred HHHHHHHhcc----CCcceeeeEEeCCCCCcCHHHHHHHHHHHhcc-----CChHHHHHhCCCCCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 394 LWFVFEHFDI----KGEHKDVDISFNYNKVANTELQVQTAQQSMGI-----VSHETVLENHPFVEDLQAELERIEQEQTE 464 (492) Q Consensus 394 ~~li~~~~~~----~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~-----vs~et~l~~l~~v~D~~~E~~ri~~E~~~ 464 (492) +++++.+.+. ..+..+++++|.++.|+|.++.+++++|+++. .+.+++++++|+. ++|++|+++|+++ T Consensus 381 ~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~---~~ei~r~~~e~~~ 457 (504) T protein:vir:99 381 MIRALAIKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLT---PQQAKRALAERRR 457 (504) T ss_pred HHHHHHHhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCC---HHHHHHHHHHHHH Confidence 9999988764 33557799999999999999999999998652 3468999999875 3466666655433 Q ss_pred HH-----Hhhcccc--CCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 465 YN-----KQLPNLD--DGGADSAQQQERSNNKESE 492 (492) Q Consensus 465 ~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~e 492 (492) .. ..+.... ..+.+..+++...+..+++ T Consensus 458 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~a~~~ 492 (504) T protein:vir:99 458 ASSVSIIEALNRRQQEAATAGEDQDQGAGEPPANE 492 (504) T ss_pred HhhHHHHHHHhcccCCCCCCCCCCCcCCCCCCCCC Confidence 21 1111111 0111111111111112222 No 56 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=100.00 E-value=8e-69 Score=393.92 Aligned_cols=400 Identities=11% Similarity=0.044 Sum_probs=291.8 Q ss_pred cccccccccccccccc-cccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 82 PVDATGAVDPLKPDDR-MITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 82 ~~~~~~~~~~~~~~~r-i~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~ 159 (492) +...+ ..+..++.+| +++|||++||++.++++.+++++ ++|.+..+.++++| .|+++..+.++++++++|||||+ T Consensus 1 ~l~~~-~~~~~~~~~~~~v~n~~~~ivd~~~~~l~~~gf~--~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~ 77 (434) T protein:vir:98 1 MLPKN-AEQAFLDFQRKARTNFCGLIANASVHRLLALGVT--GPDGEPDTRASRWWQANRLDSRQKLVWRMAMAQSAGYM 77 (434) T ss_pred CCCCC-ccHHHHHhhhhhhccchHHHHHHHHhhhccCcee--cCCCchHHHHHHHHHhcChhHHHHHHHHHHhhcCceEE Confidence 11111 2233444444 57899999999999999888865 55555556566555 68999999999999999999999 Q ss_pred EEEeCCCC-------ceEEEEEcccceEEEecCCCCCceEEEEEeeeeccc--eeEEEEecceEEEEEEe--cceeeecc Q lcl|Aclame:pro 160 HPYLDEEG-------EFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE--TKVEYWDKVTVNYYVYE--NGSLIPDY 228 (492) Q Consensus 160 ~v~~d~~g-------~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~ 228 (492) +||.++++ .+.|++++|++++++||+.. +++.+++++|..+.. ....+|.......|... ........ T Consensus 78 ~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~-~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (434) T protein:vir:98 78 LVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPET-GEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRERTGARLPWG 156 (434) T ss_pred EEecCCCcccccCCceeEEEEeccceeEEEEeCCC-CceEEEEEEEEeccCCceEEEEEEeCcEEEEEEeeccccccccc Confidence 99987654 46799999999999999764 569999998876543 33445544433333221 11111111 Q ss_pred c--cccccccccceeccCCccceEeecCc----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccch Q lcl|Aclame:pro 229 S--NNLENSKTHFSTGSWGKIPFIPFKNN----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELP 302 (492) Q Consensus 229 ~--~~~~~~~~~~~~~~~g~iPvv~~~nn----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~ 302 (492) . ...........+|+||.||||+|.|| .+|+|+|+++++|||+||+++|++++.++++++|+++++|.+.+... T Consensus 157 ~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~ 236 (434) T protein:vir:98 157 PDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGEDPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWIKGHKFAKRT 236 (434) T ss_pred cccceecccccccccCCCCccceEEeccCCCcCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCccccc Confidence 1 11122344567899999999999998 67899999999999999999999999999999999999997654322 Q ss_pred hhHH--------hhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccccc---chhHHHHHHH Q lcl|Aclame:pro 303 EFKR--------LLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGS---APSGVALEFL 371 (492) Q Consensus 303 ~~~~--------~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~---~~Sg~Al~~~ 371 (492) +... .......+...+++++++.+ ++....++++++|+.+|+.++.++++++..||+ |+||+||+++ T Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q--~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~~~~~~n~Sg~Al~~~ 314 (434) T protein:vir:98 237 DPATGMTVVDQPFVPSPSAVWASEGENTQFGQ--LDATDLSGFLKEHASDVRDMLTISQTPTYLYATDLVNISADTIGAL 314 (434) T ss_pred ccccccchhhhhhhccccccccCCCCCceEEE--ecCcchHHHHHHHHHHHHHHhcccCCCHHHhccccCChHHHHHHHH Confidence 2111 11112233445667788754 455667889999999999998888887777764 7999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHhcc-CChHHHHHhCCCCCC Q lcl|Aclame:pro 372 YTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGI-VSHETVLENHPFVED 450 (492) Q Consensus 372 ~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~-vs~et~l~~l~~v~D 450 (492) +.+|..|+..+++.|+++|++++++++.+.|...+..+++++|+++.|+|.++.+|+++|+.|+ +|.+++++++|++ T Consensus 315 ~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ada~~kl~~~g~~~e~~~~~lg~~-- 392 (434) T protein:vir:98 315 DILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANPAHVTMAVKADAATKLKSIGYPLDVIAEELDES-- 392 (434) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCCCCCCHHHHHHHHHHHHhcCCcHHHHHHhCCCC-- Confidence 9999999999999999999999999999999888888999999999999999999999999886 8999999999985 Q ss_pred HHHHHHHHHHHHHHHHHhhcccc--CCCCCCCC-cCCCCCCCC Q lcl|Aclame:pro 451 LQAELERIEQEQTEYNKQLPNLD--DGGADSAQ-QQERSNNKE 490 (492) Q Consensus 451 ~~~E~~ri~~E~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~ 490 (492) ++|++|+++|+.+......... .+.+..+. +++++..++ T Consensus 393 -~~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dg 434 (434) T protein:vir:98 393 -PARVRRIVAGAASQALLAASLLPAPGAPSAGNVPDSGGAVDG 434 (434) T ss_pred -HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccCCCCC Confidence 3688888877654322211111 11111111 111111111 No 57 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=100.00 E-value=4.2e-67 Score=384.51 Aligned_cols=395 Identities=13% Similarity=0.039 Sum_probs=307.2 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC Q lcl|Aclame:pro 44 TLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) Q Consensus 44 ~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 123 (492) -....|..|++++..+++|++++.+||+|+|++++.+... .+..+..+|++.||++++|+++++++..++++ + T Consensus 1 m~~~~i~~L~~~~~~~~~r~~~~~~yy~g~~~~~~~~~~~-----p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf~--~ 73 (422) T protein:vir:97 1 MNYMGMGYLRRKLALFKTGVDKRYRYYAMDDRDDTRSIVM-----PNNVREMYRSVLEWTAKGVDSLADRIIFREFT--N 73 (422) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhcCccc-----cHHHHHHHHhhcchhHHHHHHHHhccccceee--C Confidence 2345677788888889999999999999999876554332 22334556788899999999999999888865 4 Q ss_pred CchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCC-CCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc Q lcl|Aclame:pro 124 TDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDE-EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN 202 (492) Q Consensus 124 ~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 202 (492) +|. +.++.|..|+|+....++++++++|||||++|+.++ +|.+++++++|++++++||+. .+++.+++++|..+. T Consensus 74 ~d~---~l~~~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p~i~~~sp~~~~~i~D~~-~~~~~~a~~~~~~~~ 149 (422) T protein:vir:97 74 DDF---NAWEIFKANNPDIFFDTAIQSALIASCCFVYIMPGAEDGLPKMQVIEASKATGILDPT-TFLLTEGYAILESDS 149 (422) T ss_pred Cch---hHHHHHHhcChHHHHHHHHHHHHHhcceeEEEeeCCCCCeeEEEEechhhEEEEEeCC-CCcceeeEEEEEecC Confidence 444 356667779999999999999999999999999986 688999999999999999875 556777777776544 Q ss_pred ceeE--EEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-----CCCCcH-HHHHHHHHHHHH Q lcl|Aclame:pro 203 ETKV--EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-----LEISDI-FMYKTLIDAYNR 274 (492) Q Consensus 203 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-----~~~s~~-~~v~~liD~~~~ 274 (492) .... ..|......++.... +.....+|++|.||+|+|.|++ +|+|++ ++|++|+|++|+ T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r 216 (422) T protein:vir:97 150 NGNPTLEAYFTDKDIWYYPKK-------------GKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKR 216 (422) T ss_pred CCcEEEEEEEcCceEEEEcCC-------------CccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHH Confidence 3322 223322222221111 1122458999999999999864 588998 689999999999 Q ss_pred HHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCC---cceeeecccCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 275 RLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNG---GVDTIQVEVPVENSKKYLDELYQKIMLFGQA 351 (492) Q Consensus 275 ~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~ 351 (492) +++++....+++++|+++++|.+.+......-.....+++.++++. ++++ ++++.+++++|+++|+.+++.+|.+ T Consensus 217 ~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~~~~~~~~i~~~~~de~~~~~~v--~q~~~~~l~~~~~~l~~~~~~~a~~ 294 (422) T protein:vir:97 217 TLERAEVTAEFYSFPQKYVLGMDPDAKPMEKWRATVSTLLEISKDEDGDKPTV--GQFTTASMAPFMEHLKMYASLFAGG 294 (422) T ss_pred HHHHHHHHHHHhcchhhhhcccCcccccCchhhhhhhhhhccCCCCCCCccee--eecCCCChhHHHHHHHHHHHHHhcc Confidence 9999999999999999999998754322211122334566665443 3454 5667777888899998888888887 Q ss_pred CCCCcccccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----cceeeeEEeCCCCCcC-- Q lcl|Aclame:pro 352 VDFSSDKFGS----APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG----EHKDVDISFNYNKVAN-- 421 (492) Q Consensus 352 p~~~~~~~~~----~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~----~~~~i~i~f~~~~p~d-- 421 (492) +++++..||+ ++||+||++++.+|..|+.++++.|+.+|++++++++++.+... ++.++++.|.++.|.+ T Consensus 295 s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~ 374 (422) T protein:vir:97 295 SGLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKWEPLFEADAN 374 (422) T ss_pred cCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccceEEEccCCCCChH Confidence 7777776663 47999999999999999999999999999999999999887533 4567899999888877 Q ss_pred -HHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 422 -TELQVQTAQQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTEY 465 (492) Q Consensus 422 -~~e~~~~~~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~ 465 (492) .++.+|+++|+. |+++.+++++++|+ ++++.|..|+++++++- T Consensus 375 s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~-~~~~~~~~~~~~~~~d~ 422 (422) T protein:vir:97 375 MLTLVGDGAIKLNQAIPGFMDADVIRDLTGV-KGADKPIPAITEVTTDG 422 (422) T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHcCC-CchhHHHHHHHhhhccC Confidence 777888999975 57899999999998 77899999999886543 No 58 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=100.00 E-value=9.6e-66 Score=377.04 Aligned_cols=382 Identities=12% Similarity=0.025 Sum_probs=300.8 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC Q lcl|Aclame:pro 44 TLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) Q Consensus 44 ~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 123 (492) ...++|.+|++++..+.+|++++.+||+|+|++.+..... .+..++++|+++||+++||+++++++..++++ + T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~-----p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~--~ 73 (409) T protein:vir:94 1 MTEKGIGYLRFKLSVHKRRAEMRYDQYAMKYVDRFKGITI-----PQALSQQYRSILGWCAKGVDSLADRLVFREFE--N 73 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhcccCchhhcChhh-----hHHHHHHHhhhcchhHHHHHHhHhhcccCccc--C Confidence 3456788888888889999999999999999875543322 22334567889999999999999999877754 4 Q ss_pred CchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccc Q lcl|Aclame:pro 124 TDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE 203 (492) Q Consensus 124 ~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~ 203 (492) +|. ++++.|..|+|+....++++++++|||||++||.+++|.++|++++|++++++||+ ..+++.++++++..+.. T Consensus 74 ~d~---~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~~i~~~sp~~~~~i~D~-~~~~~~~a~~~~~~d~~ 149 (409) T protein:vir:94 74 DDF---TVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAVRLQVIEAVNATGIIDP-ITGLLTEGYAVLERDEN 149 (409) T ss_pred Cch---HHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCceEEEEeccceEEEEEec-CCCceeeeEEEEEecCC Confidence 444 34555667999999999999999999999999999999999999999999999987 56779999998876543 Q ss_pred e---eEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-----CCCCcH-HHHHHHHHHHHH Q lcl|Aclame:pro 204 T---KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-----LEISDI-FMYKTLIDAYNR 274 (492) Q Consensus 204 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-----~~~s~~-~~v~~liD~~~~ 274 (492) . ...+|+++.+..+....+. ....+|++|.||+|+|.|++ +|+|++ ++|++|+|++|+ T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r 216 (409) T protein:vir:94 150 NNVVLEAHFLPDRTDYYYRDSRN-------------NISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKR 216 (409) T ss_pred CceEEEEEEecCcEEEEEecCce-------------eEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHH Confidence 3 3456777766655433221 12357999999999999864 688998 689999999999 Q ss_pred HHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCC---CcceeeecccCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 275 RLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDN---GGVDTIQVEVPVENSKKYLDELYQKIMLFGQA 351 (492) Q Consensus 275 ~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~ 351 (492) +++++.+..+++++|+++++|.+.+......-.....+++.++++ .++++ ++++.+++++|+++++.+++.+|++ T Consensus 217 ~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~~~~~~~~i~~~~~d~dg~~~~v--~q~~~~~l~~~~~~l~~~~~~~a~~ 294 (409) T protein:vir:94 217 TLERADVTAEFYSFPQKYVTGLSDDAEPMETWKATVSSMLQFTKDEDGDKPTL--GQFTQPSMSPFTEQLRTAAAGFAGE 294 (409) T ss_pred HHHHHHHHHHHhcChhheeEecCCCCcccchhhhhHHHhhcCCCCCCCCCceE--EecCCCChhHHHHHHHHHHHHHhhh Confidence 999999999999999999999865322111111223456666543 34555 4556666778888888888888887 Q ss_pred CCCCcccccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcceeeeEEeCCCCCcC-- Q lcl|Aclame:pro 352 VDFSSDKFGS----APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK----GEHKDVDISFNYNKVAN-- 421 (492) Q Consensus 352 p~~~~~~~~~----~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----~~~~~i~i~f~~~~p~d-- 421 (492) +++++..||+ ++||+||++++.+|..++.++++.|+.+|++++++++.+.+.. .++.++++.|.+..|.+ T Consensus 295 t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~~~~~~ 374 (409) T protein:vir:94 295 TGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPKWEPLFEADAS 374 (409) T ss_pred cCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEEeccCCCcchH Confidence 7777777763 4799999999999999999999999999999999999987653 35568999999776665 Q ss_pred -HHHHHHHHHHHhc----cCChHHHHHhCCCCCCHH Q lcl|Aclame:pro 422 -TELQVQTAQQSMG----IVSHETVLENHPFVEDLQ 452 (492) Q Consensus 422 -~~e~~~~~~k~~g----~vs~et~l~~l~~v~D~~ 452 (492) .++.+|+++|+++ +.+.+++++++|+.++ + T Consensus 375 ~~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~-d 409 (409) T protein:vir:94 375 MLSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGG-E 409 (409) T ss_pred HHHHHHHHHHHHHHhcccccchhHHHHHcCCCCC-C Confidence 5778899999864 4567999999998742 2 No 59 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=100.00 E-value=5.2e-66 Score=378.48 Aligned_cols=383 Identities=11% Similarity=0.060 Sum_probs=296.1 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHH Q lcl|Aclame:pro 53 IKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRI 132 (492) Q Consensus 53 i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l 132 (492) ++.| .+|++++.+||+|+|++.+..... .+..++++|++.||++++|+++++++..++++ .+|.. ++ T Consensus 1 l~~~---~~r~~~~~~yY~g~~~~~~~~~~~-----p~~~~~~~~~v~nw~~~~Vds~a~rl~~~Gf~--~~d~~---l~ 67 (410) T protein:vir:95 1 MNLY---QSRVNLRYKHYAMQHYEAPTGITI-----PAHIRAKYQAVLGWAAKGVDSLADRLIFRAFA--NDDFN---VT 67 (410) T ss_pred CCcc---hhhHHHHHHHhcCCCCccccchhc-----cHHHHhHHHhhcchhHHHHHHhHhhhcccccc--CCCch---HH Confidence 3444 568888999999999875544332 22345667888999999999999999888865 44443 45 Q ss_pred HHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccce---eEEEE Q lcl|Aclame:pro 133 DEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET---KVEYW 209 (492) Q Consensus 133 ~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~---~~~~~ 209 (492) +.|..|+|+....++++++++|||||++||.+++|.++|+++||++++++||+ ..+++.++++++..++.. ...+| T Consensus 68 ~i~~~N~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~~i~~~sP~~~~~i~Dp-~~~~~~~al~~~~~~~~~~~~~~~~~ 146 (410) T protein:vir:95 68 EIFDRNNPDIFFDSAILSALIGSCSFVYISKGEDDEVRLQVIESSNATGVIDP-ITGLLVEGYAVLARDDYNRPTLEAYF 146 (410) T ss_pred HHHhhcChHHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEEeC-CCCceEEEEEEEEecCCCeEEEEEEE Confidence 55667999999999999999999999999999999999999999999999987 667899999887655443 35677 Q ss_pred ecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-----CCCCcH-HHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 210 DKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-----LEISDI-FMYKTLIDAYNRRLSDLSNTF 283 (492) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-----~~~s~~-~~v~~liD~~~~~~s~~~~~~ 283 (492) ++..+.++..... ....+|++|.||+|+|.|++ +|+|++ ++|++|+|+++++++++.... T Consensus 147 ~~~~~~~~~~~~~--------------~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~ 212 (410) T protein:vir:95 147 EPNATHFIPKDGE--------------PYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITA 212 (410) T ss_pred eCCcEEEEeeCCc--------------cccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHHHHHHHH Confidence 7777666543221 12357999999999999864 588988 679999999999999999999 Q ss_pred HhcCCceEEEecCCcccchhhHHhhhhccceecCCCC---cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc Q lcl|Aclame:pro 284 KDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNG---GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG 360 (492) Q Consensus 284 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~ 360 (492) +++++|+++++|.+.+..+...-.....+++.++++. .+++ ++++..++++|++.++.+++.+|.++++++..|| T Consensus 213 e~~a~pqr~i~G~d~d~~~~~~~~~~~~~i~~~~~~~~~~~~~v--~q~~~~~l~~~~~~l~~l~~~~a~~s~lP~~~lg 290 (410) T protein:vir:95 213 EFYSWPQKYILGLDPDAEPMEKWKATVSSLLTISSSDKGVKPSV--GQFTTASMSPFTEQLRTAAAGFAGEMGLTLDDLG 290 (410) T ss_pred HHhcchhheeeccCCCCCcCchhhhhhhhheeccCCCCCCcceE--EecCCCChHHHHHHHHHHHHHHhhhcCCCHHHhc Confidence 9999999999998754322222222334567766543 3454 4556666778888888888888877777666665 Q ss_pred c----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcceeeeEEeC---CCCCcCHHHHHHHH Q lcl|Aclame:pro 361 S----APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK----GEHKDVDISFN---YNKVANTELQVQTA 429 (492) Q Consensus 361 ~----~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----~~~~~i~i~f~---~~~p~d~~e~~~~~ 429 (492) + ++||+||++++.+|..|+.++++.|+.+|++++++++.+.+.. .+..++++.|. ++..++.++.+|++ T Consensus 291 ~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa~ 370 (410) T protein:vir:95 291 FVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAVKWEPLFEADANTMTMIGDGV 370 (410) T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeEEeeecCCcchhhHHHHHHHH Confidence 3 4799999999999999999999999999999999999987643 34567899998 45556899999999 Q ss_pred HHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 430 QQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQ 468 (492) Q Consensus 430 ~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~ 468 (492) +|+. |+++++++++++|++++ ++. |+..|..++..+ T Consensus 371 ~Kl~~a~~g~~~~~~~~~~lg~~~~--~~~-~~~~~e~~~~g~ 410 (410) T protein:vir:95 371 VKLNQALPGYINAETIRDLTGIAGD--MSA-KPVVSEGGSNGE 410 (410) T ss_pred HHHHHhccCCccHHHHHHhcCCChH--HHH-HHHHHHHHhCCC Confidence 9984 67899999999999753 333 344343333222 No 60 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=100.00 E-value=1.8e-65 Score=375.56 Aligned_cols=434 Identities=14% Similarity=0.125 Sum_probs=314.8 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) +-|+.+-.+ . ..++....++.+|++++..++++++++.+||+|+|++.+.+...+. ..+ +.++++||+ T Consensus 1 ~~~~~~~~~-----~-gl~~~~~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~~~~~~~~p~-----~~r-~~~~v~nw~ 68 (474) T protein:vir:81 1 MIQQQTVRI-----P-SLSNDENALINGLLAQIENLRWKNLLRTSYYENKRTIQYVGTLIPP-----QYF-NLGLVLGWT 68 (474) T ss_pred CcCCCcCcC-----C-CCChhHHHHHHHHHHHHHHHhhHHHHHHHHhccCCChhhccccccH-----HHH-HHHhhcChH Confidence 222211111 1 2233345688999999999999999999999999987655433222 222 456789999 Q ss_pred HHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc--eEEEEEcccceEE Q lcl|Aclame:pro 104 ANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGE--FKLFRVPAEQGIP 181 (492) Q Consensus 104 ~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~--~~i~~~~p~~~~~ 181 (492) +++|+++++++..++++...+++.....++.|..|+|+....++++++++|||||++|+.+++|. ++|++++|+++++ T Consensus 69 ~~~Vd~~a~rl~~~Gf~~~d~~~~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~ 148 (474) T protein:vir:81 69 GKAVDALARRCNLEGFVWPDGDLDSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATG 148 (474) T ss_pred HHHHHHHHhhhcccceECCCCCccchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEE Confidence 99999999999999998655444445566777789999999999999999999999999987764 7899999999999 Q ss_pred EecCCCCCceEEEEEeeeeccc---eeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-- Q lcl|Aclame:pro 182 IWTDKEHEELEAFIRMYKLENE---TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-- 256 (492) Q Consensus 182 i~d~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-- 256 (492) +||+.. +++.+++.++..+.. ....+|.++.++++....+ ...+..+..+|++| ||||+|.|++ T Consensus 149 ~~D~~~-~~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~---------~~~w~~~~~~~~~g-vPvV~~~n~~~~ 217 (474) T protein:vir:81 149 EWNRRR-RGLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKA---------TLKWQVDRDEHVYG-VPAQVLPYKPAP 217 (474) T ss_pred EEeCCC-CcceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCc---------cceeeeccCCCCCC-cceEEecccccc Confidence 998754 567777766544333 2346787777766553322 12234566789998 7999999874 Q ss_pred ---CCCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchh----hHHhh--hhccceecCCCCcce--- Q lcl|Aclame:pro 257 ---LEISDI-FMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPE----FKRLL--RYYGAIKVSDNGGVD--- 323 (492) Q Consensus 257 ---~~~s~~-~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~----~~~~~--~~~~~~~~~~~~d~~--- 323 (492) +|+|++ +++++|+|++|++++++....+++++|+++++|.+.+...+ ..... ...+++.++++++.+ T Consensus 218 ~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~ 297 (474) T protein:vir:81 218 KRPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADADIPQ 297 (474) T ss_pred cCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhcccccccccchhhhhHHHHhcCCCcccccccc Confidence 689988 69999999999999999999999999999999987543221 11111 123355555544322 Q ss_pred ---eeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 ---TIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKF-----GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLW 395 (492) Q Consensus 324 ---~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~-----~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~ 395 (492) ...++++.+++++|++.|+..+..+|...++++..+ .++.||+||++++.+|..|+.++++.|+.+|+++++ T Consensus 298 ~~~~~~~q~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~kae~k~~~fg~~l~~~~r 377 (474) T protein:vir:81 298 LARADVKQFPAASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAEAEGAVDDFTPALRKAFI 377 (474) T ss_pred cccccccccCCCChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 223667777888888888888887775555544433 456899999999999999999999999999999999 Q ss_pred HHHHHhccC------CcceeeeEEeCCCCCcCHHHHHHHHHHHh----ccCChHHHHHhCCCCCCHHHHHHHHHHHHHH- Q lcl|Aclame:pro 396 FVFEHFDIK------GEHKDVDISFNYNKVANTELQVQTAQQSM----GIVSHETVLENHPFVEDLQAELERIEQEQTE- 464 (492) Q Consensus 396 li~~~~~~~------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~----g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~- 464 (492) +++.+.+.. .+...+++.|.++..++.++.+|+++|+. |+.+.+++++++++. +.+++++++++++ T Consensus 378 la~~i~~~~~~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t---~~~i~~~~~~~~~~ 454 (474) T protein:vir:81 378 RALAMKNKVAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLT---PQQARRAMADKRRV 454 (474) T ss_pred HHHHHhCCCCccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCC---HHHHHHHHHHHHHH Confidence 999998742 23568999999999999999999999985 356678888888875 3566666654332 Q ss_pred -HHHhhccccCCCCCCCCcC Q lcl|Aclame:pro 465 -YNKQLPNLDDGGADSAQQQ 483 (492) Q Consensus 465 -~~~~~~~~~~~~~~~~~~~ 483 (492) ....+......+.+.+..+ T Consensus 455 ~~~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 455 QGRGTLQALIDRSNNGATAQ 474 (474) T ss_pred hHHHHHHHHHhcCCCCCCCC Confidence 2222222222222221111 No 61 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=100.00 E-value=2.9e-64 Score=368.94 Aligned_cols=382 Identities=13% Similarity=0.026 Sum_probs=299.1 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC Q lcl|Aclame:pro 44 TLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) Q Consensus 44 ~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 123 (492) ...++|.+|+++...+.+|++++.+||+|+|.+.+..... ....+.++|+++||++++|+++++++..++++ + T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~-----p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~--~ 73 (409) T protein:vir:16 1 MTEKGIGYLRFKLSVHKRRAEMRYEQYAMKHVDRFKGITI-----PQALSQQYRSILGWCAKGVDSLADRLVFREFE--N 73 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHhccCchhhcchhh-----hHHHHHHHhhhcChhHHHHHHhHhhccccccc--C Confidence 3356788888888889999999999999999875443322 22334567888999999999999999878754 4 Q ss_pred CchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccc Q lcl|Aclame:pro 124 TDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE 203 (492) Q Consensus 124 ~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~ 203 (492) +|. .+++.|..|+|+....++++++++|||||++|+.+++|.++|++++|++++++||+ ..+++.+++++|..+.. T Consensus 74 ~d~---~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~~i~~~sP~~~~~i~D~-~~~~~~~a~~~~~~d~~ 149 (409) T protein:vir:16 74 DDF---TVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAVRLQVIEATNATGIIDP-ITGLLTEGYAVLERDEN 149 (409) T ss_pred cch---HHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCceEEEEEcccceEEEeec-ccccceeeeEEEEecCC Confidence 444 34555667999999999999999999999999999999999999999999999986 56788888888765543 Q ss_pred e---eEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-----CCCCcH-HHHHHHHHHHHH Q lcl|Aclame:pro 204 T---KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-----LEISDI-FMYKTLIDAYNR 274 (492) Q Consensus 204 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-----~~~s~~-~~v~~liD~~~~ 274 (492) . ...+|.++.+..+....+ .....+|++|.||+|+|.|++ +|+|++ ++|++|+|++|+ T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r 216 (409) T protein:vir:16 150 NNVVLEAHFLPDRTDYYYRDSR-------------NNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKR 216 (409) T ss_pred CceEEEEEEecCcEEEEEecCc-------------cccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHH Confidence 3 234666666555432221 112357999999999999874 689998 679999999999 Q ss_pred HHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCC---CcceeeecccCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 275 RLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDN---GGVDTIQVEVPVENSKKYLDELYQKIMLFGQA 351 (492) Q Consensus 275 ~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~ 351 (492) +++++....+++++|+++++|.+.+......-.....+++.++++ .++++ ++++.+++++|++.++.+++.+|++ T Consensus 217 ~~~~~~~~~e~~a~pqr~i~G~d~d~~~~~~~~~~~~~i~~~~~d~~g~~~~v--~q~~~~~l~~~~~~l~~~~~~~a~~ 294 (409) T protein:vir:16 217 TLERADVTAEFYSFPQKYVTGLSDDAEPMETWKATVSSMLQFTKDEDGDKPTL--GQFTQPSMSPFTEQLRTAAAGFAGE 294 (409) T ss_pred HHHHHHHHHHHhcChhheeEecCCCCCccchhhhhhhHhhccCCCCCCCCceE--EecCCCChhHHHHHHHHHHHHHhhh Confidence 999999999999999999999865422211112223456666543 33454 5667777888888888888888887 Q ss_pred CCCCcccccc---c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----cceeeeEEeCCCCCcC-- Q lcl|Aclame:pro 352 VDFSSDKFGS---A-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG----EHKDVDISFNYNKVAN-- 421 (492) Q Consensus 352 p~~~~~~~~~---~-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~----~~~~i~i~f~~~~p~d-- 421 (492) +++++..||+ | +||+||++++.+|..|+.++++.|+.+|++++++++.+.+... +..++++.|.++.+.+ T Consensus 295 s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~v~W~~~~~~~~~ 374 (409) T protein:vir:16 295 TGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTKPKWEPLFEADAS 374 (409) T ss_pred cCCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccceEEecCCCCcchh Confidence 7777777663 3 7999999999999999999999999999999999999977533 3467899999877554 Q ss_pred -HHHHHHHHHHHhc----cCChHHHHHhCCCCCCHH Q lcl|Aclame:pro 422 -TELQVQTAQQSMG----IVSHETVLENHPFVEDLQ 452 (492) Q Consensus 422 -~~e~~~~~~k~~g----~vs~et~l~~l~~v~D~~ 452 (492) .++.+|+++|+++ +...+++++++|+.++ + T Consensus 375 s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~-d 409 (409) T protein:vir:16 375 MLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGA-E 409 (409) T ss_pred hHHHHHHHHHHHHhhcccccchhHHHHhccCCCC-C Confidence 7899999999864 3457999999998642 2 No 62 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=100.00 E-value=1.4e-61 Score=354.21 Aligned_cols=452 Identities=11% Similarity=0.095 Sum_probs=305.6 Q ss_pred hhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccccccc Q lcl|Aclame:pro 3 FIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIV-RYIKQHLEKLPEISIGQEYYEQRPDIVKEPK 81 (492) Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~ 81 (492) .+.-|.+-.|.|.+ .++ +..+ + .+.+. .-+..+..++.++.++++||+|+|+++.+.. T Consensus 1 m~~~~~~~~~~~~~---~~~-~~~~----~-------------~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~ 59 (496) T protein:vir:38 1 MINQIIAGVKGVMR---RMG-LLKA----L-------------KDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLN 59 (496) T ss_pred ChhHHHHHHHHHHH---Hhc-cchh----h-------------HHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcch Confidence 11111112222222 111 1111 1 11121 1122345677888999999999999877654 Q ss_pred cccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEE Q lcl|Aclame:pro 82 PVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLH 160 (492) Q Consensus 82 ~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~ 160 (492) .... ...+.++|+++||++.||++.++|++|+|++++++++..++.|+.+++ |+|...+.+++..++++|.+|++ T Consensus 60 ~~~~----~~~~~~~~~~~n~~k~i~~~~a~~l~~~p~~i~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~ 135 (496) T protein:vir:38 60 YEHN----GNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKINIDDKAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIK 135 (496) T ss_pred hccC----CCccccceeecchHHHHHHHHhhhhhCCcceEeeCChHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEE Confidence 4322 223445678999999999999999999999999999999999998875 68999999999999999999999 Q ss_pred EEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccce--eEEEEecce----EEEEEEe--cceeeec-c--c Q lcl|Aclame:pro 161 PYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET--KVEYWDKVT----VNYYVYE--NGSLIPD-Y--S 229 (492) Q Consensus 161 v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~----~~~~~~~--~~~~~~~-~--~ 229 (492) +|.|++|++++.+++|.+++|++++...-...++++.+..+... .++.|+... +.+..+. .+..... . . T Consensus 136 ~~~D~~~~~~i~~v~~~~~~P~~~~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~ 215 (496) T protein:vir:38 136 VYHDGNKNVKVSFATADCMYPLSNDSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLT 215 (496) T ss_pred EEEcCCCcEEEEEEcccceEEEEecCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCcccccc Confidence 99999999999999999999998875433345555555544332 233333221 1111111 1110000 0 0 Q ss_pred cccccccccceeccCCccceEeecCc---------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE------- Q lcl|Aclame:pro 230 NNLENSKTHFSTGSWGKIPFIPFKNN---------DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL------- 293 (492) Q Consensus 230 ~~~~~~~~~~~~~~~g~iPvv~~~nn---------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~------- 293 (492) ............+++.++||++|+++ +.|.|+|+++++++|+||.++|++++.++....++++- T Consensus 216 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~v~~~~l~~~ 295 (496) T protein:vir:38 216 LLFDDIEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTA 295 (496) T ss_pred ccccccccceeecCCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccceecchHHhhcc Confidence 00111223445577889999998754 35899999999999999999999999999877666661 Q ss_pred ecCCcccchhhHHhhhhccceecCCCC---cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc-ccccchhHHHHH Q lcl|Aclame:pro 294 KNYDDQELPEFKRLLRYYGAIKVSDNG---GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFGSAPSGVALE 369 (492) Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~-~~~~~~Sg~Al~ 369 (492) .+..++....+......+.++....++ .++..++++..+++...++.+.+.+...++++...++ ..+|..||.+++ T Consensus 296 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~ 375 (496) T protein:vir:38 296 VNLDGSTTQYFDSTDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVV 375 (496) T ss_pred CCCCCccccCCCCccceEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHH Confidence 122222223333333333344333222 3455666777788888888877777777766543322 224567899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHH Q lcl|Aclame:pro 370 FLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-------IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHET 440 (492) Q Consensus 370 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-------~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et 440 (492) ++++.+.+++..+++.|+.+|++++++++.+.. ...+..+++++|++++|.|..+.+++++++ +|++|++| T Consensus 376 ~~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et 455 (496) T protein:vir:38 376 SEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKI 455 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHH Confidence 999999999999999999999999999886532 334556789999999999999999999987 59999999 Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 441 VLENHPFVEDL--QAELERIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 441 ~l~~l~~v~D~--~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) ++..+|+++|. ++|++||++|++.... ....++..+++| T Consensus 456 ~l~~~~~~~d~ea~~el~ri~~E~~~~~~---~~d~~~~~~~~e 496 (496) T protein:vir:38 456 ALQRAWNITEAEADEWAEMLAKEKQAEMP---NNDMNGIFGEEE 496 (496) T ss_pred HHHhcCCCChHHHHHHHHHHHHhhhccCc---cccccCCCCCCC Confidence 99999999774 4689999888754321 111111111111 No 63 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=100.00 E-value=1.9e-59 Score=342.46 Aligned_cols=452 Identities=12% Similarity=0.111 Sum_probs=309.0 Q ss_pred hhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 2 QFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMI-VRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) -|=.|+.-| |-+.+. ++ .. ..+.+.+ ..-|.-+.....++.++++||+|+|+.+.+. T Consensus 1 m~~~~~~~~-~~~~~~---~~--------------~~----~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~ 58 (499) T protein:vir:80 1 MINQIIAGV-KGVMRR---MG--------------LL----KSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNL 58 (499) T ss_pred ChhHHHHHH-HHHHHH---hc--------------cc----cchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhcc Confidence 122222211 222111 11 00 0011111 1111224456678888999999999876554 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~ 159 (492) .... ....+.++|+++|+++.||++.++|++|+|++++++++..++.|+.+.+ |+|...+.+++..|+.+|.+|+ T Consensus 59 ~~~~----~~~~~~~~~~s~n~~~~iv~~~a~~l~~ep~~i~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~ 134 (499) T protein:vir:80 59 NYEH----NGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKINIDDETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVI 134 (499) T ss_pred cccc----CCCccccceeecchHHHHHHHHHHhhhCCcceEeeCCHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEE Confidence 3322 1233456789999999999999999999999999999999999998875 6799999999999999999999 Q ss_pred EEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccce--eEEEEe--cceEEEEEEecceeeeccccc---- Q lcl|Aclame:pro 160 HPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET--KVEYWD--KVTVNYYVYENGSLIPDYSNN---- 231 (492) Q Consensus 160 ~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~---- 231 (492) .+|.|++|++++.+++|.+++|++.+...-...+++..+..++.. ..+.+. ......|......+....... T Consensus 135 ~~~~D~~~~~~i~~v~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~ 214 (499) T protein:vir:80 135 KVYHDGNKNVKVSFATADCMYPLSNDSENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGK 214 (499) T ss_pred EEEECCCCcEEEEEEcCCceEEEEecCCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcc Confidence 999999999999999999999997765443445556555544321 122222 111112222211111111110 Q ss_pred ------cccccccceeccCCccceEeecCc---------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE---- Q lcl|Aclame:pro 232 ------LENSKTHFSTGSWGKIPFIPFKNN---------DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV---- 292 (492) Q Consensus 232 ------~~~~~~~~~~~~~g~iPvv~~~nn---------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~---- 292 (492) .....+....++++++|+++|+++ +.|.|+|+++++++|+||.++|++++.++....++++ T Consensus 215 v~l~~~~~~~~~~~~~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~ 294 (499) T protein:vir:80 215 VSLKLLFNDIEPVVPLPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSF 294 (499) T ss_pred cchhhhccCcCCceeecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhcccceecchhh Confidence 111223334467899999999764 3589999999999999999999999999998888887 Q ss_pred ---EecCCcccchhhHHhhhhccceecCCC-C--cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc-ccccchhH Q lcl|Aclame:pro 293 ---LKNYDDQELPEFKRLLRYYGAIKVSDN-G--GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFGSAPSG 365 (492) Q Consensus 293 ---~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~-~~~~~~Sg 365 (492) ..+.+++....+....+.+..+...++ + .++..++++..+++...++.+.+.|...++.+...++ ..+++.|| T Consensus 295 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TA 374 (499) T protein:vir:80 295 VKTAVNLDGSTTQYFDSTDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTA 374 (499) T ss_pred hhccCCCCCCcccCCCcccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhH Confidence 223334444444445555555543322 2 3566667888888888888888888777766543322 22356789 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCcceeeeEEeCCCCCcCHHHHHHHHHHH--hccC Q lcl|Aclame:pro 366 VALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-------IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIV 436 (492) Q Consensus 366 ~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-------~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~v 436 (492) .+++++++.+..++..+++.|+.+|++++++|+.+.. ...+...+.++|++.+|.|..+.+++++++ +|++ T Consensus 375 tei~s~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~ 454 (499) T protein:vir:80 375 TEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMI 454 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCC Confidence 9999999999999999999999999999999886532 223456799999999999999999999887 4999 Q ss_pred ChHHHHHhCCCCCCH--HHHHHHHHHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 437 SHETVLENHPFVEDL--QAELERIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 437 s~et~l~~l~~v~D~--~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) |++|++..+++++|. ++|++||++|++... +..+.++..+++| T Consensus 455 S~et~l~~~~~~~d~ea~~el~~i~~E~~~~~---~~~d~~g~~ge~e 499 (499) T protein:vir:80 455 PLKIALQRAWNITEAEADEWAEMLAKEKQAEI---PNNDMTGIFGEEE 499 (499) T ss_pred CHHHHHhhcCCCChHHHHHHHHHHHHHhhcCC---CCCCccccCCCCC Confidence 999999999998874 468888888875332 1111111112111 No 64 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=100.00 E-value=4e-51 Score=296.87 Aligned_cols=448 Identities=15% Similarity=0.177 Sum_probs=306.0 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) |-+++-|..+-+++.+..|.. ..+..+ .+++.. .--...+.+++++++||.|+|++++.. T Consensus 1 m~~~~~ik~~~~~~~~~~~~~--------~~~~~i---~d~~~i---------~~~~~~~~~i~~~~~~Y~g~~~~l~~~ 60 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMT--------KSLGQI---IDDPRI---------NLPADEVERIARDKRYYMDDFKQVTHK 60 (505) T ss_pred CchHHHHHHHHHHhhhhhcch--------hhhhhh---hcccCC---------CCCHHHHHHHHHHHHHhcCCCcccccc Confidence 998888888877765433221 112221 111111 011234566777889999999876543 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~ 159 (492) .. . ...+.++++++|+++.||+..|++++|+|++++++++..++.|+.+.+ |+|...+.+++..++..|.+++ T Consensus 61 ~~-~-----~~~~~~~~~slnl~~~i~~~~A~ll~~e~~~i~~~d~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~ 134 (505) T protein:vir:79 61 NS-Y-----GDTQKHELQSVNVTKLASAKLASLIFNEQCQVTVSDETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCV 134 (505) T ss_pred cc-C-----CCccccceeecchHHHHHHHHHhhhcCCCceeecCChHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEE Confidence 32 1 122344577889999999999999999999999999999999998775 6899999999999999999999 Q ss_pred EEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecccee------EEEEec----ceEEEEEEecc--eeeec Q lcl|Aclame:pro 160 HPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETK------VEYWDK----VTVNYYVYENG--SLIPD 227 (492) Q Consensus 160 ~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~----~~~~~~~~~~~--~~~~~ 227 (492) .+|.|. |++++.+++|.+++|++.++.....++++..|...+... .+.|+. +.|.+..+... ..+.. T Consensus 135 k~~~D~-~~~~i~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~ 213 (505) T protein:vir:79 135 RPYVDS-GKIKLAWATADQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGI 213 (505) T ss_pred EEEEeC-CceEEEEEcCCeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCc Confidence 999984 789999999999999965555444555555554433322 233321 22222111110 00000 Q ss_pred ----cc-cccccccccceeccCCccceEeecC----c-----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE Q lcl|Aclame:pro 228 ----YS-NNLENSKTHFSTGSWGKIPFIPFKN----N-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL 293 (492) Q Consensus 228 ----~~-~~~~~~~~~~~~~~~g~iPvv~~~n----n-----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~ 293 (492) .. .....-.+....+++.++|+++|++ + +.|.|+|+++++++|++|.++|++++.++....++.+- T Consensus 214 ~v~l~~~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~ 293 (505) T protein:vir:79 214 NVPLNSLEQYEGLEPQVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVP 293 (505) T ss_pred ccchhhcccccccCcceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeec Confidence 00 0011112233345677888888865 2 35899999999999999999999999999888887772 Q ss_pred ecC------Ccccch-----hhHHhhhhccceecCC-CCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc-ccc Q lcl|Aclame:pro 294 KNY------DDQELP-----EFKRLLRYYGAIKVSD-NGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFG 360 (492) Q Consensus 294 ~g~------~~~~~~-----~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~-~~~ 360 (492) ..+ ...... -+......+..+..++ ++.++.+++++..+++...++.+.+.|...++.+.-.++ ... T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~ 373 (505) T protein:vir:79 294 AEWLKTGSSYGGQASETHPPMFDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPS 373 (505) T ss_pred hHHhcccCCCCcccccccccCCCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCcc Confidence 211 111100 1111222222332222 344667778888899999999998888888876543322 223 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CCcceeeeEEeCCCCCcCHHHHHH Q lcl|Aclame:pro 361 SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-------------KGEHKDVDISFNYNKVANTELQVQ 427 (492) Q Consensus 361 ~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~-------------~~~~~~i~i~f~~~~p~d~~e~~~ 427 (492) +..||+++++..+.+.++++.+++.|+.+|+++++.|+.+... .....++.|+|++.++.|..+.++ T Consensus 374 ~~~TAtei~s~~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~ 453 (505) T protein:vir:79 374 GIQTATEVVTNNSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRA 453 (505) T ss_pred ccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHH Confidence 5668999999999999999999999999999999999865421 112357889999999999999999 Q ss_pred HHHHH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCC Q lcl|Aclame:pro 428 TAQQS--MGIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGAD 478 (492) Q Consensus 428 ~~~k~--~g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 478 (492) ..+++ +|++|++++++.+|+++| +++|++||++|+.... +...+.+++ T Consensus 454 ~~~~~v~~Gi~s~e~~l~~~~~~~eeea~~el~ri~~E~~~~~---p~~~~~gg~ 505 (505) T protein:vir:79 454 ADLQAVQAQVMPKKQFLMRNYGLDEEEADEWLAQIDAENSTAE---PEFNQFGGD 505 (505) T ss_pred HHHHHHHcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhccccC---CCchhccCC Confidence 98887 489999999999999976 7789999999875422 222222222 No 65 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=100.00 E-value=3.7e-51 Score=297.08 Aligned_cols=454 Identities=17% Similarity=0.210 Sum_probs=302.6 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) |-+|+-|..+-+ |+.+-++...+ +..+. +++. |.--...+.++.++++||+|+|+..... T Consensus 1 m~~~~~~k~~~~---~~~~~~~~~~~-----~~~~~---~~~~---------i~~~~~~~~ri~~~~~~y~g~~~~~~~~ 60 (508) T protein:vir:15 1 MGLIQRIKDLFW---KGAAATGVTGS-----LSKIT---DDPR---------ISIDPDEYVRIQTDLDYYSDKLQYIHYQ 60 (508) T ss_pred CChHHHHHHHHH---HHHHHhccccc-----hHHhh---cccc---------cccCHHHHHHHHHHHHHhcCCCcccccc Confidence 887777765544 33333332221 21111 1111 1112345678999999999999865322 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC-CchhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH-TDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~-~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~ 158 (492) . .. ...+...+++.|+++.||+..|++++++|+++++ +++..++.|+.++ +|+|...+.+++..++.+|.++ T Consensus 61 ~-~~-----~~~~~~~~~sln~~~~i~~~~A~lv~~e~~~i~v~~~~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~ 134 (508) T protein:vir:15 61 A-SD-----GIKKKRLKNTINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFA 134 (508) T ss_pred c-CC-----CCccccceeecchHHHHHHHHHhhhhCCCceEEeCCchHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceE Confidence 1 11 1122335678899999999999999999999998 4555667788776 5789999999999999999999 Q ss_pred EEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEec-----------ceEEEEEEecce---- Q lcl|Aclame:pro 159 LHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDK-----------VTVNYYVYENGS---- 223 (492) Q Consensus 159 ~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~---- 223 (492) +.+|.|. ++++|.+++|.+++|+..+..+..-.++++.+...+.....+|+. ..|.+..+.... T Consensus 135 ~k~~~d~-~~~~i~~v~ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~l 213 (508) T protein:vir:15 135 MRPYIDG-NHIKIAWVRADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIV 213 (508) T ss_pred EEEEEeC-CeeEEEEEcCCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhc Confidence 9999986 679999999999999744333333344444443322222222322 222222222210 Q ss_pred --eeeccc-cccccccccceeccCCccceEeecCc---------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 224 --LIPDYS-NNLENSKTHFSTGSWGKIPFIPFKNN---------DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 224 --~~~~~~-~~~~~~~~~~~~~~~g~iPvv~~~nn---------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) .+.... .....-.+....+++.++|+++|+++ +.|.|+|+++++++|++|.++|++++.++....+++ T Consensus 214 G~~v~l~~~~e~~~l~~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~ 293 (508) T protein:vir:15 214 GNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIA 293 (508) T ss_pred CcccchhhcccccCCCcceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhccccee Confidence 000000 00111122334467788999998652 458999999999999999999999999988777777 Q ss_pred E---EecCCcccchhhHHhhhhccceecCCC--CcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc-ccccchhH Q lcl|Aclame:pro 292 V---LKNYDDQELPEFKRLLRYYGAIKVSDN--GGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFGSAPSG 365 (492) Q Consensus 292 ~---~~g~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~-~~~~~~Sg 365 (492) + +...+++....+....+.+..+..+++ ..++.+++++..+.+...++.+.+.|...++.+.-.++ ..++..|| T Consensus 294 v~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TA 373 (508) T protein:vir:15 294 VQPGMLRFDDEHKPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTA 373 (508) T ss_pred echHHhcCCCCCccccCCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCccccH Confidence 7 333344333333333333444443333 34777888889999999999988888887776543332 22355799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------CcceeeeEEeCCCCCcCHHHHHHHHH Q lcl|Aclame:pro 366 VALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK---------------GEHKDVDISFNYNKVANTELQVQTAQ 430 (492) Q Consensus 366 ~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~---------------~~~~~i~i~f~~~~p~d~~e~~~~~~ 430 (492) .++++..+.+.++++.+++.|+.+|++++++|+.+.... ....+++|.|++.++.|..+.++..+ T Consensus 374 tei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~ 453 (508) T protein:vir:15 374 TEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDA 453 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHH Confidence 999999999999999999999999999999988764321 12346889999999999999999998 Q ss_pred HH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 431 QS--MGIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 431 k~--~g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) ++ +|++|++++++.+|+++| +++|++||++|+.+....-... + ..+..++| T Consensus 454 ~~v~aGi~s~e~~i~~~~g~~deea~~el~ri~~E~~~~~~~~~~~-------~-~~~g~~ge 508 (508) T protein:vir:15 454 KVLAIGALSKQTFLQRNYGMTDEQAAEELAKIQSEAPTDTFEGGRS-------A-ILNGGDGE 508 (508) T ss_pred HHHhcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccccc-------c-cCCCCCCC Confidence 86 489999999999998866 6789999999975421110000 0 01111111 No 66 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=100.00 E-value=7.1e-48 Score=279.07 Aligned_cols=449 Identities=15% Similarity=0.136 Sum_probs=292.2 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) |-+++.|..+-++. .+.++.. . +..+ ..++. |.--.+++.+|+++++||+|+++.+... T Consensus 1 m~~~~~~k~~~~~~---~~~~~~~-----~-~~~~---~~~~~---------i~~~~~~~~~i~~~~~~Y~g~~~~~~~~ 59 (500) T protein:vir:98 1 MGVIQKIKNLVTRS---KYVMTTQ-----S-LTNI---TDHPK---------IAISKLEYDRITTNLKYYKSDWDSVLYL 59 (500) T ss_pred CchHHHHHHHHHHH---HHHhhcc-----h-hhhh---hcccc---------ccCCHHHHHHHHHHHHHhcCCCCCcccc Confidence 99998887776543 2222211 1 1111 11111 1112346678999999999997644222 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~ 159 (492) .. ....+.++++++|+++.||+..+++++++|++++++++..++.|+.+.+ |+|...+.+++..++..|.+++ T Consensus 60 ~~------~~~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~ 133 (500) T protein:vir:98 60 NT------DGETKKRDLNHLPIARTAAKKIASLVFNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAM 133 (500) T ss_pred cC------CCCcccCceeecchHHHHHHHHhhhhcCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEE Confidence 11 1123445678889999999999999999999999999999999998875 6899999999999999999999 Q ss_pred EEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEee-eecc-ce----eEEEEe-----cceEEEEEEecce----- Q lcl|Aclame:pro 160 HPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMY-KLEN-ET----KVEYWD-----KVTVNYYVYENGS----- 223 (492) Q Consensus 160 ~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~-~~~~-~~----~~~~~~-----~~~~~~~~~~~~~----- 223 (492) .+|.|. ++++|.+++|.+++|+..+.......+++..+ .... .. ..+.|+ +..|.+..+.... T Consensus 134 k~~~d~-~~~~I~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG 212 (500) T protein:vir:98 134 RPYVDG-DKVRVAFVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVG 212 (500) T ss_pred EEEEeC-CceEEEEEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccC Confidence 999985 67999999999999986655444444443332 2211 11 122332 1223322222210 Q ss_pred -eeeccccccccccccceeccCCccceEeecC----c-----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE Q lcl|Aclame:pro 224 -LIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----N-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL 293 (492) Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n-----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~ 293 (492) .+..... ...-.+.....++.++|+++|++ + +.|.|+|+++++++|++|.++|++++.++....++.+. T Consensus 213 ~~v~l~~~-~~~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~ 291 (500) T protein:vir:98 213 SRVPLSEV-YKDLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVP 291 (500) T ss_pred cccccccc-cCCcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeec Confidence 0000000 01112233446677788887754 2 35899999999999999999999999999877777773 Q ss_pred ecC--------CcccchhhHHh--hhhccceecCCC--CcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCc-cccc Q lcl|Aclame:pro 294 KNY--------DDQELPEFKRL--LRYYGAIKVSDN--GGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS-DKFG 360 (492) Q Consensus 294 ~g~--------~~~~~~~~~~~--~~~~~~~~~~~~--~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~-~~~~ 360 (492) ..+ +++......-. -..+..+...++ ..++.+++++..+++...++.+.+.|...++.+...+ ...+ T Consensus 292 ~~~l~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~ 371 (500) T protein:vir:98 292 ESLTALTVRTTDGDVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGK 371 (500) T ss_pred hHHhcccCCCCCccccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcC Confidence 322 11111111111 112222332222 3466677777777777777777666655555433222 1223 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCcceeeeEEeCCCCCcCHHHHHHHHHHH- Q lcl|Aclame:pro 361 SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-------IKGEHKDVDISFNYNKVANTELQVQTAQQS- 432 (492) Q Consensus 361 ~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-------~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~- 432 (492) +..||.+++++.+.+.++++.+++.|+.+|++++++|+.+.. ......++.|+|++.++.|..+.++..+++ T Consensus 372 g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v 451 (500) T protein:vir:98 372 SMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVV 451 (500) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHH Confidence 567899999999999999999999999999999999986532 122345689999999999999999999886 Q ss_pred -hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC Q lcl|Aclame:pro 433 -MGIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN 488 (492) Q Consensus 433 -~g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (492) +|++|++++++.+++++| +++|+++|++|.........+..+ --|+ T Consensus 452 ~aGi~s~~~~i~~~~g~~eeea~~~l~~i~~E~~~~~~~~~~~~~----------~~g~ 500 (500) T protein:vir:98 452 NAGFGTREMAIQKVLNVTEEKAQEIAAEINTGIVDEINQQRTDTH----------LYGE 500 (500) T ss_pred HcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccccCCCCCcccc----------ccCC Confidence 589999999987766654 556778887765322111111111 1111 No 67 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=100.00 E-value=7.1e-48 Score=279.07 Aligned_cols=449 Identities=15% Similarity=0.136 Sum_probs=292.2 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) |-+++.|..+-++. .+.++.. . +..+ ..++. |.--.+++.+|+++++||+|+++.+... T Consensus 1 m~~~~~~k~~~~~~---~~~~~~~-----~-~~~~---~~~~~---------i~~~~~~~~~i~~~~~~Y~g~~~~~~~~ 59 (500) T protein:vir:30 1 MGVIQKIKNLVTRS---KYVMTTQ-----S-LTNI---TDHPK---------IAISKLEYDRITTNLKYYKSDWDSVLYL 59 (500) T ss_pred CchHHHHHHHHHHH---HHHhhcc-----h-hhhh---hcccc---------ccCCHHHHHHHHHHHHHhcCCCCCcccc Confidence 99998887776543 2222211 1 1111 11111 1112346678999999999997644222 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~ 159 (492) .. ....+.++++++|+++.||+..+++++++|++++++++..++.|+.+.+ |+|...+.+++..++..|.+++ T Consensus 60 ~~------~~~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~ 133 (500) T protein:vir:30 60 NT------DGETKKRDLNHLPIARTAAKKIASLVFNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAM 133 (500) T ss_pred cC------CCCcccCceeecchHHHHHHHHhhhhcCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEE Confidence 11 1123445678889999999999999999999999999999999998875 6899999999999999999999 Q ss_pred EEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEee-eecc-ce----eEEEEe-----cceEEEEEEecce----- Q lcl|Aclame:pro 160 HPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMY-KLEN-ET----KVEYWD-----KVTVNYYVYENGS----- 223 (492) Q Consensus 160 ~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~-~~~~-~~----~~~~~~-----~~~~~~~~~~~~~----- 223 (492) .+|.|. ++++|.+++|.+++|+..+.......+++..+ .... .. ..+.|+ +..|.+..+.... T Consensus 134 k~~~d~-~~~~I~~v~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG 212 (500) T protein:vir:30 134 RPYVDG-DKVRVAFVQAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVG 212 (500) T ss_pred EEEEeC-CceEEEEEcCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccC Confidence 999985 67999999999999986655444444443332 2211 11 122332 1223322222210 Q ss_pred -eeeccccccccccccceeccCCccceEeecC----c-----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE Q lcl|Aclame:pro 224 -LIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----N-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL 293 (492) Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n-----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~ 293 (492) .+..... ...-.+.....++.++|+++|++ + +.|.|+|+++++++|++|.++|++++.++....++.+. T Consensus 213 ~~v~l~~~-~~~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~ 291 (500) T protein:vir:30 213 SRVPLSEV-YKDLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVP 291 (500) T ss_pred cccccccc-cCCcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeec Confidence 0000000 01112233446677788887754 2 35899999999999999999999999999877777773 Q ss_pred ecC--------CcccchhhHHh--hhhccceecCCC--CcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCc-cccc Q lcl|Aclame:pro 294 KNY--------DDQELPEFKRL--LRYYGAIKVSDN--GGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS-DKFG 360 (492) Q Consensus 294 ~g~--------~~~~~~~~~~~--~~~~~~~~~~~~--~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~-~~~~ 360 (492) ..+ +++......-. -..+..+...++ ..++.+++++..+++...++.+.+.|...++.+...+ ...+ T Consensus 292 ~~~l~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~ 371 (500) T protein:vir:30 292 ESLTALTVRTTDGDVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGK 371 (500) T ss_pred hHHhcccCCCCCccccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcC Confidence 322 11111111111 112222332222 3466677777777777777777666655555433222 1223 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCcceeeeEEeCCCCCcCHHHHHHHHHHH- Q lcl|Aclame:pro 361 SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-------IKGEHKDVDISFNYNKVANTELQVQTAQQS- 432 (492) Q Consensus 361 ~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-------~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~- 432 (492) +..||.+++++.+.+.++++.+++.|+.+|++++++|+.+.. ......++.|+|++.++.|..+.++..+++ T Consensus 372 g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v 451 (500) T protein:vir:30 372 SMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVV 451 (500) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHH Confidence 567899999999999999999999999999999999986532 122345689999999999999999999886 Q ss_pred -hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC Q lcl|Aclame:pro 433 -MGIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN 488 (492) Q Consensus 433 -~g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (492) +|++|++++++.+++++| +++|+++|++|.........+..+ --|+ T Consensus 452 ~aGi~s~~~~i~~~~g~~eeea~~~l~~i~~E~~~~~~~~~~~~~----------~~g~ 500 (500) T protein:vir:30 452 NAGFGTREMAIQKVLNVTEEKAQEIAAEINTGIVDEINQQRTDTH----------LYGE 500 (500) T ss_pred HcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHhccccCCCCCcccc----------ccCC Confidence 589999999987766654 556778887765322111111111 1111 No 68 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=100.00 E-value=3.2e-47 Score=275.50 Aligned_cols=457 Identities=15% Similarity=0.124 Sum_probs=300.3 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) |-+|+-|..+-+++.+..+.. . +. .+...+ .+..+.+++.++.+++.||+|+++..... T Consensus 1 m~~~~~~k~~~~k~~~~~~~~--------~-~~---~i~~~~---------~i~~~~~~~~~i~~~~~~y~g~~~~~~~~ 59 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTS--------N-LN---SILEHP---------KIAVTQEEYDRIKRNLVYYQSKWDDVQYK 59 (522) T ss_pred CchHHHHHHHHHHHHHHhhcc--------c-ch---hccccC---------CCCCCHHHHHHHHHHHHHhcCCccccccc Confidence 888777766655444322111 0 10 011110 12235567788999999999987543211 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~ 159 (492) .. ......+++++.|+++.||+..|++++++|++++++++..++.|+.+.+ |+|...+.+++..++..|.+++ T Consensus 60 ~~------~~~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~v~d~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~ 133 (522) T protein:vir:47 60 NT------DGDIKSRPMNHLPIARTASKKIASLVYNEQATITTKNEILQKFLDDMLTNDRFNKNFERYLESCLALGGLAM 133 (522) T ss_pred cc------CcchhcccceecchHHHHHHHHhhhhcCCcceeecCChHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEE Confidence 10 1122334578889999999999999999999999999999999998775 7899999999999999999999 Q ss_pred EEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEE--eeeeccceeEEEEecceEEE-----------------EEEe Q lcl|Aclame:pro 160 HPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIR--MYKLENETKVEYWDKVTVNY-----------------YVYE 220 (492) Q Consensus 160 ~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 220 (492) .+|.|. |++++.+++|.+++|+..++.. ...+++. .+..... ...+|+-.+.+. |.+. T Consensus 134 k~~~d~-~~~~i~~v~ad~~~P~~~~~~~-~~e~a~~~~~~~~~~~-~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~ 210 (522) T protein:vir:47 134 RPYIDG-DKVRVAFIQAPVFFPLESNTQD-VSSAAILTKTIKSEGR-KNVYYTLVEFHEWVTADGQETGSTNDKKYYRIT 210 (522) T ss_pred EEEEcC-CceEEEEEcCCceEEEEEcCCc-eEEEEEEEEEEeeccc-ceeEEEEEEEeeecccccccccccccCCceEEE Confidence 999974 7899999999999998544333 3333322 2222211 112222111111 1111 Q ss_pred cceeeeccccc------------cccccccceeccCCccceEeecCc---------cCCCCcHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 NGSLIPDYSNN------------LENSKTHFSTGSWGKIPFIPFKNN---------DLEISDIFMYKTLIDAYNRRLSDL 279 (492) Q Consensus 221 ~~~~~~~~~~~------------~~~~~~~~~~~~~g~iPvv~~~nn---------~~~~s~~~~v~~liD~~~~~~s~~ 279 (492) ...+....... .....+.....++.++++++|+++ +.|.|+|+..++++|++|.++|.+ T Consensus 211 n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~ 290 (522) T protein:vir:47 211 NELYRSDVNDVLGQRVNLSELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEF 290 (522) T ss_pred EEEeecCCCcccCccccccccccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHH Confidence 11111100000 111123334456778888888653 458999999999999999999999 Q ss_pred HHHHHhcCCceEEEecC--------Ccc--cchhhHHhhhhccceec--CCCCcceeeecccCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 280 SNTFKDSNELTYVLKNY--------DDQ--ELPEFKRLLRYYGAIKV--SDNGGVDTIQVEVPVENSKKYLDELYQKIML 347 (492) Q Consensus 280 ~~~~~~~~~~~l~~~g~--------~~~--~~~~~~~~~~~~~~~~~--~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~ 347 (492) ++.++....++++-..+ ++. ....+......+..+.. .++++++.+++++..+.+...++.+.+.|.. T Consensus 291 ~~e~~~g~~~i~v~~~~l~~~~~~~~g~~~~~~~fd~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~ 370 (522) T protein:vir:47 291 MWEVRMGQRRVIVPEHLTQRQYQRPDGTIDFRPRFDVEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEM 370 (522) T ss_pred HHHHHhccceeecchHHhccCCCCCCcccccccccCcccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHH Confidence 99999888888773221 111 11111111222333332 2344677788888888888878777777766 Q ss_pred HhCCCCCCc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCcceeeeEEeCCCCC Q lcl|Aclame:pro 348 FGQAVDFSS-DKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-------IKGEHKDVDISFNYNKV 419 (492) Q Consensus 348 ~a~~p~~~~-~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-------~~~~~~~i~i~f~~~~p 419 (492) .++...-.+ ...++..+|.++++..+.+.++++.+++.++.+|+++++.|+.+.. .......+.|+|++.++ T Consensus 371 ~~gls~~tf~~~~~~~kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~ 450 (522) T protein:vir:47 371 QIGVSSGMFTFDGQGMKTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVF 450 (522) T ss_pred HhCCCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCC Confidence 655432222 2223556899999999999999999999999999999999986653 22345679999999999 Q ss_pred cCHHHHHHHHHHH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCC Q lcl|Aclame:pro 420 ANTELQVQTAQQS--MGIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKE 490 (492) Q Consensus 420 ~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (492) .|..+.++..+++ +|++|++++++.+++++| +++|++||++|+.+... .-.+..+...++...+++++ T Consensus 451 ~D~~~~~~~~~~~v~aG~~s~e~~i~~~~g~~eeea~~el~ri~~E~~~~~~---~~~~~~~~~~~~~~~~d~~~ 522 (522) T protein:vir:47 451 TDRHAELDYWAKMVAAGFSTKKRAIGKTLNISGVEAEKELNAINSELLPMND---AELAIYGMHDQNEEKADDKG 522 (522) T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCChHHHHHHHHHHHHhhccCCC---CCCCCCCCCCcccccCCCCC Confidence 9999999999886 589999999998877765 67899999988654311 11122222233333333333 No 69 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=100.00 E-value=2.7e-45 Score=264.91 Aligned_cols=456 Identities=13% Similarity=0.125 Sum_probs=303.5 Q ss_pred CCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccccccccccccccccccccc Q lcl|Aclame:pro 17 GGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQH-LEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPD 95 (492) Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~ 95 (492) =+-++=-|.++. -+ +.++... ... +..| +.|+.+|+.+.+||.|.+.-+....+... . +-. T Consensus 1 ~~~~~~~~~~~~-----~~-~~g~~~~--p~~----v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~--~----~~~ 62 (527) T protein:vir:10 1 MGQDKRQYGSTQ-----QL-RAGEANF--PNA----VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGD--E----GDQ 62 (527) T ss_pred CCccccccCCCc-----Cc-CCccccC--ccc----CCHHHHHHHHHHHHHHHHhcCchhheeeecCCcc--c----ccc Confidence 011111122111 11 2222211 111 2223 45889999999999998743322111100 0 011 Q ss_pred cccccchHHHHHHHHHHhhhcCCeee--cCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC----CCc Q lcl|Aclame:pro 96 DRMITNFHANLVDQKVSYIVGKPIAF--KHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE----EGE 168 (492) Q Consensus 96 ~ri~~n~~~~ivd~~~~~l~g~~~~~--~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~----~g~ 168 (492) ..+.++..++|+.....|+ +.+..+ +..++.++..+++|.+ +++..++.+.-+++++.|.+.+++-.|+ .++ T Consensus 63 r~~~~ps~~~~~~~~~~~~-~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R 141 (527) T protein:vir:10 63 RPIYVPNGEKLIEAKMRFL-GQGLKWEFSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) T ss_pred ceeeehhhHHhhCCcceee-ccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCC Confidence 2466777777777665444 344332 3446678888888875 7899999999999999999876665553 258 Q ss_pred eEEEEEcccceEEEecCCCCCceEEE--EEeeeeccceeEEEE-----------------ecceEEEEEEecceeeeccc Q lcl|Aclame:pro 169 FKLFRVPAEQGIPIWTDKEHEELEAF--IRMYKLENETKVEYW-----------------DKVTVNYYVYENGSLIPDYS 229 (492) Q Consensus 169 ~~i~~~~p~~~~~i~d~~~~~~~~~~--i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 229 (492) ++++.+||.+.||+.|+...+.+..+ +.-|...+....-++ ...+...| ....+...+++ T Consensus 142 ~~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~y-t~~~w~lg~w~ 220 (527) T protein:vir:10 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKY-TEELYEPGKWD 220 (527) T ss_pred ceEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceee-eeceeeccccc Confidence 99999999999999887766666655 223443322211111 11111222 22222221111 Q ss_pred -------------cccccccccceeccCCccceEeecCc-----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 230 -------------NNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 230 -------------~~~~~~~~~~~~~~~g~iPvv~~~nn-----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) ......+.+..+++++.||||+|+|- .+|+|+++++++++|++|+++|+.+..+.+...|+. T Consensus 221 d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~ 300 (527) T protein:vir:10 221 DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFY 300 (527) T ss_pred cccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCcee Confidence 11234556678899999999999763 479999999999999999999999999999999999 Q ss_pred EEecCCcccc-hhhHH-hhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc--ccccchhHHH Q lcl|Aclame:pro 292 VLKNYDDQEL-PEFKR-LLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD--KFGSAPSGVA 367 (492) Q Consensus 292 ~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~--~~~~~~Sg~A 367 (492) ++.|...-+. ++... .+..+.++.+++++++..+....+...++.|++.|.+.|+..|++|.+..+ ..++++||.| T Consensus 301 ~~tg~~~vd~~G~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~A 380 (527) T protein:vir:10 301 ATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAVAESGIA 380 (527) T ss_pred eecccccccccCCcCccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHHH Confidence 9999754321 11111 234456788999999888776668889999999999999999999999888 4457899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHhcc--CC--cceeeeEEeCCCCCcCHHHHHHHHHHH--hccC Q lcl|Aclame:pro 368 LEFLYTNLNLKADKLARKAKVAIQELLW-FVF----EHFDI--KG--EHKDVDISFNYNKVANTELQVQTAQQS--MGIV 436 (492) Q Consensus 368 l~~~~~~l~~k~~~~~~~~~~~l~~~~~-li~----~~~~~--~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~v 436 (492) |+..+++|.+++.+++..++...++..+ .+. .+.+. .+ ....+.++|.+++|.|.++.++.++++ +|++ T Consensus 381 LeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGi~ 460 (527) T protein:vir:10 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNSEKRFNQLLQLWEAGLI 460 (527) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcCch Confidence 9999999999999999888888876543 222 22222 22 234679999999999999999999987 5899 Q ss_pred ChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHh-hccccCC----CCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 437 SHETVLENH---PFVEDLQAELERIEQEQTEYNKQ-LPNLDDG----GADSAQQQERSNNKESE 492 (492) Q Consensus 437 s~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~e 492 (492) |.+|++++| ++++|+++|+++|.+|++..... +.-.... +.+.+-++++.++..|- T Consensus 461 S~~tAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~~~~d~~~~~ 524 (527) T protein:vir:10 461 PAKKLTEELSKIMGFELTEEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) T ss_pred hHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCC Confidence 999998887 77899999999999987653322 2211111 22222233333333333 No 70 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=100.00 E-value=3.2e-45 Score=264.54 Aligned_cols=456 Identities=12% Similarity=0.124 Sum_probs=303.5 Q ss_pred CCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccccccccccccccccccccc Q lcl|Aclame:pro 17 GGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQH-LEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPD 95 (492) Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~ 95 (492) =+-++=-|.++. -+ +.++... ... +..| +.|+.+|+.+.+||.|.+.-+....+... . +-. T Consensus 1 ~~~~~~~~~~~~-----~~-~~g~~~~--p~~----v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~--~----~~~ 62 (527) T protein:vir:10 1 MGQDKRQYGSTQ-----QL-RAGEANF--PNA----VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGD--E----GDQ 62 (527) T ss_pred CCccccccCCCc-----Cc-CCccccC--ccc----CCHHHHHHHHHHHHHHHHhcCchhheeeecCCcc--c----ccc Confidence 011111122211 11 2222211 111 2223 45889999999999998743322111100 0 011 Q ss_pred cccccchHHHHHHHHHHhhhcCCeee--cCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC----CCc Q lcl|Aclame:pro 96 DRMITNFHANLVDQKVSYIVGKPIAF--KHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE----EGE 168 (492) Q Consensus 96 ~ri~~n~~~~ivd~~~~~l~g~~~~~--~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~----~g~ 168 (492) ..+.++..++|+.....|+ +.+..+ +..++.++..+.+|.+ +++..++.+.-+++++.|.+.+++-.|+ .++ T Consensus 63 r~~~~ps~~~~~~~~~~~~-~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R 141 (527) T protein:vir:10 63 RPIYVPNGEKLIEAKMRFL-GQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) T ss_pred ceeeehhhHHhhCCcceee-ccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCC Confidence 2466777777777665444 344332 3346678888888875 7899999999999999999876665553 258 Q ss_pred eEEEEEcccceEEEecCCCCCceEEE--EEeeeeccceeEEEE-----------------ecceEEEEEEecceeeeccc Q lcl|Aclame:pro 169 FKLFRVPAEQGIPIWTDKEHEELEAF--IRMYKLENETKVEYW-----------------DKVTVNYYVYENGSLIPDYS 229 (492) Q Consensus 169 ~~i~~~~p~~~~~i~d~~~~~~~~~~--i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 229 (492) ++++.+||.+.||+.|+...+.+..+ +.-|...+....-++ ...+...| ....+...+++ T Consensus 142 ~~v~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~y-t~~~w~lg~w~ 220 (527) T protein:vir:10 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKY-TEELYEPGKWD 220 (527) T ss_pred ceEeecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceee-eeceeeccccc Confidence 99999999999999887766666655 223443322211111 11111222 22222221111 Q ss_pred -------------cccccccccceeccCCccceEeecCc-----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 230 -------------NNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 230 -------------~~~~~~~~~~~~~~~g~iPvv~~~nn-----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) ......+.+..+++++.||||+|+|- .+|+|+++++++++|++|+++|+.+..+.+...|+. T Consensus 221 d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~ 300 (527) T protein:vir:10 221 DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFY 300 (527) T ss_pred cccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCcee Confidence 11234556678899999999999763 479999999999999999999999999999999999 Q ss_pred EEecCCcccc-hhhHH-hhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc--ccccchhHHH Q lcl|Aclame:pro 292 VLKNYDDQEL-PEFKR-LLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD--KFGSAPSGVA 367 (492) Q Consensus 292 ~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~--~~~~~~Sg~A 367 (492) ++.|...-+. ++... .+..+.++.+++++++..+....+...++.|++.|.+.|+..|++|.+..+ ..++++||.| T Consensus 301 ~~tg~~~vd~~G~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~A 380 (527) T protein:vir:10 301 ATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA 380 (527) T ss_pred eecccccccccCCcCccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHHH Confidence 9999754321 11111 234456788999999888776668889999999999999999999999888 4457899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH----HHhcc--CC--cceeeeEEeCCCCCcCHHHHHHHHHHH--hccC Q lcl|Aclame:pro 368 LEFLYTNLNLKADKLARKAKVAIQELLW-FVF----EHFDI--KG--EHKDVDISFNYNKVANTELQVQTAQQS--MGIV 436 (492) Q Consensus 368 l~~~~~~l~~k~~~~~~~~~~~l~~~~~-li~----~~~~~--~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~v 436 (492) |+..+++|.+++.+++..++...++..+ .+. .+.+. .+ ....+.++|.+++|.|.++.++.++++ +|++ T Consensus 381 LeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGii 460 (527) T protein:vir:10 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcCch Confidence 9999999999999999888888876543 222 22222 22 234679999999999999999999987 5899 Q ss_pred ChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHh-hccccCC----CCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 437 SHETVLENH---PFVEDLQAELERIEQEQTEYNKQ-LPNLDDG----GADSAQQQERSNNKESE 492 (492) Q Consensus 437 s~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~e 492 (492) |.+|++++| ++++|+++|+++|.+|++..... +.-.... +.+.+-++++.++..|- T Consensus 461 S~etAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~~~~d~~~~~ 524 (527) T protein:vir:10 461 PAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) T ss_pred hHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCC Confidence 999998887 77899999999999998653322 2211111 22222233333333333 No 71 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=100.00 E-value=1.1e-43 Score=256.01 Aligned_cols=435 Identities=16% Similarity=0.090 Sum_probs=272.8 Q ss_pred hhHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCccccccccc--cccccccccccccccccchHHHHHHHHHHhh Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHL------EKLPEISIGQEYYEQRPDIVKEPKPV--DATGAVDPLKPDDRMITNFHANLVDQKVSYI 114 (492) Q Consensus 43 ~~~~~~l~~~i~~~~------~~~~~~~~~~~YY~G~~~i~~~~~~~--~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l 114 (492) +.+-..++++|+.+- .+..++..+.++|.+...-..+..+. .......+...+.+++.|+++.|++..|+++ T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A~ll 80 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAAEYI 80 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCccccccccCChHHHHHHHHHHhh Confidence 223333333333322 12333334444444432211111000 0000112334456789999999999999999 Q ss_pred hcCCeeecC------CchhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCC Q lcl|Aclame:pro 115 VGKPIAFKH------TDDEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKE 187 (492) Q Consensus 115 ~g~~~~~~~------~d~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~ 187 (492) |+++++++. +++..++.|+.+. +|+|...+.+++..++..|.+++.+|.+. |++++.+++|.+++|+|++. T Consensus 81 ~~e~~~i~v~~~~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~~~i~~v~ad~~~P~~~~g- 158 (518) T protein:vir:78 81 SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN-GRPSISVHSSSQFWIDFKNN- 158 (518) T ss_pred cCCCceEEecCccccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEEC-CeeEEEEEcCCeeEEEeecC- Confidence 999998864 4566788888866 57899999999999999999999999874 88999999999999999764 Q ss_pred CCceEEEEEeeeeccceeEEEEe------------------cceEEEEEEec--ceeeecccc----------ccccccc Q lcl|Aclame:pro 188 HEELEAFIRMYKLENETKVEYWD------------------KVTVNYYVYEN--GSLIPDYSN----------NLENSKT 237 (492) Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~~------------------~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~ 237 (492) ++..++............+|+ ...|.+..+.. +........ ......+ T Consensus 159 --~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~~~~~e 236 (518) T protein:vir:78 159 --EPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQL 236 (518) T ss_pred --cEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccccccccccccccccccccCcc Confidence 344433322222222111222 11222221111 000000000 0000111 Q ss_pred cceeccCCccceEeecC-----c-----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC--------cc Q lcl|Aclame:pro 238 HFSTGSWGKIPFIPFKN-----N-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD--------DQ 299 (492) Q Consensus 238 ~~~~~~~g~iPvv~~~n-----n-----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~--------~~ 299 (492) ..........|+++|.+ + +.|.|+|+..++++|++|.++|++++.++....++.+...+- .. T Consensus 237 ~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~~ 316 (518) T protein:vir:78 237 NHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDK 316 (518) T ss_pred ceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHhCCceeeechhHhccCCCCCCCc Confidence 11112234566666532 2 238999999999999999999999999998777777743221 11 Q ss_pred cchhhHHhhhhccceecCC--CCc----ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHH Q lcl|Aclame:pro 300 ELPEFKRLLRYYGAIKVSD--NGG----VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYT 373 (492) Q Consensus 300 ~~~~~~~~~~~~~~~~~~~--~~d----~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~ 373 (492) ....+....+.+..+.... +++ ++.+++++..+++...++.+.+.|...++.+.-.++..++..||.++++..+ T Consensus 317 ~~~~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~~~~~TATei~s~~~ 396 (518) T protein:vir:78 317 EEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQD 396 (518) T ss_pred cccccCCCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCcccccccHHHHHHHHH Confidence 1122222233344443322 333 4566778888888888888888887777665444433345789999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHH Q lcl|Aclame:pro 374 NLNLKADKLARKAKVAIQELLWFVFEHFDIK---------GEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVL 442 (492) Q Consensus 374 ~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~---------~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l 442 (492) .+.++++.++..++.+|+++++.++.++..- .+...+.|.|++.++.|..+.+++.+++ +|++|+++++ T Consensus 397 ~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~~~v~aGimS~e~~i 476 (518) T protein:vir:78 397 ATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKV 476 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHH Confidence 9999999999999999999999998765421 2345688999999999999999998875 5899999999 Q ss_pred Hh-CCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 443 EN-HPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 443 ~~-l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) ++ +|.++| +++|++||++|+...... .+-..++.++... T Consensus 477 ~~~~~~~~deea~~e~~ri~~E~~~~~~~-~p~~~~g~~~~~g 518 (518) T protein:vir:78 477 KLIHPKWEDEEIQAEVKRIYLENAIGEVP-DPEAIGGMETKGG 518 (518) T ss_pred HHhCCCCCHHHHHHHHHHHHHHhcccCCC-CCccccCCCCCCC Confidence 86 566655 678999999997543211 1111111111111 No 72 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=100.00 E-value=9.2e-41 Score=240.07 Aligned_cols=454 Identities=15% Similarity=0.148 Sum_probs=286.5 Q ss_pred hhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc Q lcl|Aclame:pro 4 IQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPV 83 (492) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~ 83 (492) ..+|+.+---|.+.+..++ +.. +..+.. ++. |.--.....++.++++||+|+++.++... . T Consensus 1 m~~~~~ik~~~~~~~~~~~-~~~-----~~~~~~---~~~---------i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~-~ 61 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALS-GQT-----LKSIND---HEK---------INIDPNELARIERNLRQYEGDYPQVEYIN-S 61 (517) T ss_pred CchHHHHHHHHHHHHHHhc-ccc-----hhHhhc---CCc---------eecCHHHHHHHHHHHHHhcCCCccccccc-c Confidence 5555554433333333332 111 111100 000 11112355678888999999997654221 1 Q ss_pred cccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCch-----------hHHHHHHHHHh-ccHHHHHHHHHHHH Q lcl|Aclame:pro 84 DATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD-----------EVVKRIDEVLG-NRFDDKLHSVLTGA 151 (492) Q Consensus 84 ~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~-----------~~~~~l~~~~~-n~~~~~~~~~~~~~ 151 (492) . ...+..++++.|+++.|+...++++|+++++++.++. ..++.|+.+.+ |+|...+.+.+..+ T Consensus 62 ~-----~~~~~~~~~sl~~~~~i~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a 136 (517) T protein:vir:98 62 Q-----GKIQERDYMTLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPT 136 (517) T ss_pred c-----ccccccceeecCcHHHHHHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHH Confidence 1 1223335678899999999999999999999987642 35777877654 68999999999999 Q ss_pred HhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEee--eeccc-e-e---EEEEecceEE----EEEEe Q lcl|Aclame:pro 152 SNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMY--KLENE-T-K---VEYWDKVTVN----YYVYE 220 (492) Q Consensus 152 ~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~--~~~~~-~-~---~~~~~~~~~~----~~~~~ 220 (492) +..|.+++.+|.|. |.++|.+++|.+++|+-.+ ..+...+++.+. ...+. . . .+.+...... .|.+. T Consensus 137 ~a~G~~a~k~~~d~-~~~~I~~v~ad~~~Pl~~~-~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~ 214 (517) T protein:vir:98 137 FALGGLTVRPYVDN-GEIEFSWALANAFYPLRSN-SNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVIT 214 (517) T ss_pred hhhCCEEEEEEEeC-CeeEEEEEcCCeeEEEEec-CCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEE Confidence 99999999999985 6799999999999996333 334444444332 22111 1 1 1222222110 01111 Q ss_pred cceeeeccccccc----------cccccceeccCCccceEeecC----c-----cCCCCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 221 NGSLIPDYSNNLE----------NSKTHFSTGSWGKIPFIPFKN----N-----DLEISDIFMYKTLIDAYNRRLSDLSN 281 (492) Q Consensus 221 ~~~~~~~~~~~~~----------~~~~~~~~~~~g~iPvv~~~n----n-----~~~~s~~~~v~~liD~~~~~~s~~~~ 281 (492) +..+........+ ...+.....++.++++++|++ + +.|.|+|++.++++|++|.++|.+++ T Consensus 215 n~ly~s~~~~~lG~~v~L~~~~e~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~ 294 (517) T protein:vir:98 215 NELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW 294 (517) T ss_pred EEEEecCCCccccccccccccccCCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHH Confidence 1111111111111 112233445566666777754 2 46999999999999999999999999 Q ss_pred HHHhcCCceEEEecCC---cccch-----hhHHhhhhccceecCC-CCcceeeecccCHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 282 TFKDSNELTYVLKNYD---DQELP-----EFKRLLRYYGAIKVSD-NGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAV 352 (492) Q Consensus 282 ~~~~~~~~~l~~~g~~---~~~~~-----~~~~~~~~~~~~~~~~-~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p 352 (492) .++....++.+-..+- .+..+ -+......+..+..+. ++.++..++++..+++...++.+.+.|...++.+ T Consensus 295 e~~~g~~~i~vp~~~l~~~~~~~g~~~~~~~d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls 374 (517) T protein:vir:98 295 EIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLS 374 (517) T ss_pred HHHhCCcceecChhhhccccCCCCcccCCCCCcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCC Confidence 9999888877743321 11000 0111112223333322 2334556677888888888998888888888776 Q ss_pred CCCcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCcceeeeEEeCCCCCcCHHH Q lcl|Aclame:pro 353 DFSSDKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-------IKGEHKDVDISFNYNKVANTEL 424 (492) Q Consensus 353 ~~~~~~~-~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-------~~~~~~~i~i~f~~~~p~d~~e 424 (492) .-.++.. .+..+|.+++...+.+.++++.+++.++.+|+++++.|+.+.. ......++.|.|.+.++.|..+ T Consensus 375 ~~t~~~~~~~~kTATEi~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~ 454 (517) T protein:vir:98 375 VGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSA 454 (517) T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHH Confidence 4433322 3456899999999999999999999999999999999875432 1123457899999999999999 Q ss_pred HHHHHHHH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCC Q lcl|Aclame:pro 425 QVQTAQQS--MGIVSHETVLENHPFVED--LQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKE 490 (492) Q Consensus 425 ~~~~~~k~--~g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (492) .+++.+++ +|++|.++++.++..+++ +++|++||++|..+. .+. ......++.-.+++| T Consensus 455 ~~~~~~~~v~aG~ms~~~~i~~~~g~~eeeA~~e~~~i~~E~~~~----~~~---~~~~~~~~~~~gd~e 517 (517) T protein:vir:98 455 LLRFYGQAKTFGFIPTVEAIQRIFKVPKKTAEQWLEEIRKDQIEL----DPV---TISQRAQKRMFGDEE 517 (517) T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCCCChHHHHHHHHHHHHhcccc----CCC---CccccccCCCCCCCC Confidence 99999886 589999999888755554 577888988887532 111 111122222223333 No 73 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=100.00 E-value=3.9e-39 Score=231.15 Aligned_cols=452 Identities=9% Similarity=0.058 Sum_probs=278.8 Q ss_pred CCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccc Q lcl|Aclame:pro 17 GGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDD 96 (492) Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ 96 (492) =+-++=.|.|+.. .| ++....+|.. ..+.|+.+|+.|.+||.|++--+.... .+. ..+ T Consensus 1 m~~~~~q~~p~~~-----~f-----p~~~a~wV~~---~D~~RlaaY~ly~d~y~n~~~el~~il--~G~----dr~--- 58 (563) T protein:vir:74 1 MPYNHKQYDPAKP-----FL-----RGGDDNIVDE---NDKNRVRAYDLYENIYLNSAETLKLVL--RGD----DSV--- 58 (563) T ss_pred CCccccccCCCcc-----cc-----cccccccCCH---HHHHHHHHHHHHHHhhcCchhhhhhhc--CCC----cee--- Confidence 1111112222110 00 2222223322 245689999999999999874321111 011 111 Q ss_pred ccccchHHHHHHHHHHhhhcCCeeecCC----c----hhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC-- Q lcl|Aclame:pro 97 RMITNFHANLVDQKVSYIVGKPIAFKHT----D----DEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE-- 165 (492) Q Consensus 97 ri~~n~~~~ivd~~~~~l~g~~~~~~~~----d----~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~-- 165 (492) -+..+.++++|++.. +++|.|+.|+.+ + +.++..|..|.+ +++..++.+..+++++.|.+.+++-.|+ T Consensus 59 ~~~~ps~r~~V~~~~-~~Lg~~~~~~Ve~~~~de~~~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K 137 (563) T protein:vir:74 59 PILMPSGRKIVEAVH-RFLGVGFDYLVEPDMGDEGIRQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNK 137 (563) T ss_pred eeccchHHHHHHHHH-HhcCCCcEEecCccccCcchHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeecccc Confidence 134567889999955 555999999653 1 234556676654 7889999999999999999876665553 Q ss_pred --CCceEEEEEcccceEEEecCCCCCceEEEEE---eeeeccceeEEE---------EecceE--EEEEEecc-eeeecc Q lcl|Aclame:pro 166 --EGEFKLFRVPAEQGIPIWTDKEHEELEAFIR---MYKLENETKVEY---------WDKVTV--NYYVYENG-SLIPDY 228 (492) Q Consensus 166 --~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~---~~~~~~~~~~~~---------~~~~~~--~~~~~~~~-~~~~~~ 228 (492) .+++++..++|.+.||+-|++. ..-.+.++ -|...+.....+ |.+.+. ..|.++.. +...++ T Consensus 138 ~~g~R~rv~~vDP~~~fp~~dpd~-v~g~~~v~v~~~~~~pdd~~~~~~r~~~~~~~lndeg~~~~~~~~dae~w~lg~w 216 (563) T protein:vir:74 138 KAGERISVDEVDPRQIFLIEDGST-VVGFHMVDIVQDFRSPDDPSKKLARRRTFRRVRNDEGMFTGRISSELTHWTLGNW 216 (563) T ss_pred ccCCCceEeecCCceeeeccCCCC-cccceeeecccCCCCCcchhccceeeeeeeeeeCCCCCccceeeeccchhccccc Confidence 3589999999999999544322 21111122 222211111000 001110 11111111 000000 Q ss_pred c-------------c----ccccccccceeccCCccceEeecCc-----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 229 S-------------N----NLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDS 286 (492) Q Consensus 229 ~-------------~----~~~~~~~~~~~~~~g~iPvv~~~nn-----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~ 286 (492) . . .....++..-+++++.||+|.|+|- .+|+|++++++++++++|+++|+.+..+.+. T Consensus 217 d~r~~~~~~~~~~~~~~~~~~~d~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~t 296 (563) T protein:vir:74 217 DDRGAISDEQARRKEQVRSAQHDEEEEELPEPISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQ 296 (563) T ss_pred cccCccchhhhcccchhhhhhhhchhhhccccccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhc Confidence 0 0 0011234455889999999998763 3799999999999999999999999999999 Q ss_pred CCceEEEecCCccc--chhhHH-hhhhccceecCCCCcc---eeeecccCHHHHHHHHHHHHH-HHHHHhCCCCCCcc-- Q lcl|Aclame:pro 287 NELTYVLKNYDDQE--LPEFKR-LLRYYGAIKVSDNGGV---DTIQVEVPVENSKKYLDELYQ-KIMLFGQAVDFSSD-- 357 (492) Q Consensus 287 ~~~~l~~~g~~~~~--~~~~~~-~~~~~~~~~~~~~~d~---~~l~~~~~~~~~~~~i~~l~~-~i~~~a~~p~~~~~-- 357 (492) ..|+.++.|...-+ .++..+ ++..+.++.++++..+ ..+..-.+...++.|++.+.. .|+..|++|....+ T Consensus 297 G~pi~vl~~~~p~d~~~g~~~~w~vgpG~i~El~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA~G~v 376 (563) T protein:vir:74 297 GLGMYVTNASAPVDPNTGELTDWNIGPMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVAIGRV 376 (563) T ss_pred CCCeEEeccccccccccccccccccCCceeEeccCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCcceeeccc Confidence 99999998754321 111111 2445667777766443 444444566889999998776 88999999999887 Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh-c-----cCC---------cceeeeEEeCCCC Q lcl|Aclame:pro 358 KFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQE----LLWFVFEHF-D-----IKG---------EHKDVDISFNYNK 418 (492) Q Consensus 358 ~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~----~~~li~~~~-~-----~~~---------~~~~i~i~f~~~~ 418 (492) ..+...||.||+..+.+|.+++.+++..+..++++ .+++++.+. + ... ....+.|+|.+.+ T Consensus 377 D~~~~~SGiALeL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~ivf~p~~ 456 (563) T protein:vir:74 377 DVTSAESGISLELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCIFADPM 456 (563) T ss_pred ccccccchhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEEeCCCC Confidence 55678999999999999999999999988888877 444444221 1 111 1124688999999 Q ss_pred CcCHHHHHHHHHHH--hccCChHHHHHhC---CCC-CCHHHHHHHHHHHHHHH--HHhhcccc----CCCCCCCCcCCCC Q lcl|Aclame:pro 419 VANTELQVQTAQQS--MGIVSHETVLENH---PFV-EDLQAELERIEQEQTEY--NKQLPNLD----DGGADSAQQQERS 486 (492) Q Consensus 419 p~d~~e~~~~~~k~--~g~vs~et~l~~l---~~v-~D~~~E~~ri~~E~~~~--~~~~~~~~----~~~~~~~~~~~~~ 486 (492) |.|.++.++.++.+ +|++|.||++++| +|. .|++.|+++|+.++=.. .+++.... ....+.+-++.+. T Consensus 457 P~d~~~vv~~~~tl~~aGiiSretAv~~L~~~g~~~pdae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a~~~~g~~~~~~ 536 (563) T protein:vir:74 457 PVNKTQVTQDTLLLQQAHLILRKMAVAKLRSIGWEYPEVDDQGNALTDDDIADMLLAEAEADASLGLSAMDNGGAGEQQF 536 (563) T ss_pred CccHHHHHHHHHHHHHcCchhHHHHHHHHHhCCCCCCcHHHHHhhcCHHHHHHHHHHHhhccCcccceecccCCCCcccc Confidence 99999999998876 5899999998887 654 47888888877654322 11111111 1122222222222 Q ss_pred CCCCCC Q lcl|Aclame:pro 487 NNKESE 492 (492) Q Consensus 487 ~~~~~e 492 (492) ++-++- T Consensus 537 dd~g~p 542 (563) T protein:vir:74 537 DDQGNP 542 (563) T ss_pred cccCCc Confidence 222222 No 74 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=100.00 E-value=3e-30 Score=182.43 Aligned_cols=423 Identities=10% Similarity=0.065 Sum_probs=264.6 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-cccccccccccccccccc----cccchHHHHHHHHHHhhhcC Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE-PKPVDATGAVDPLKPDDR----MITNFHANLVDQKVSYIVGK 117 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~-~~~~~~~~~~~~~~~~~r----i~~n~~~~ivd~~~~~l~g~ 117 (492) +. |..-=..+....++.++.++-|.|...+... ..+.+....+....-..| +..|+++.+++.++|++|.+ T Consensus 1 m~----V~~~hp~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~~n~~~~t~~~~~G~vf~k 76 (452) T protein:vir:94 1 MP----IETKHPEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLSGQTDDMYNAYKQRALFYSITSKTLSALSGMVLDQ 76 (452) T ss_pred CC----CCCcCHHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCCCCCHHHHHHHHhhccCCchHHHHHHHHhchhhcC Confidence 00 1110123345566777777777776543221 112111111111100112 34799999999999999999 Q ss_pred CeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCC-ceEEEEEcccceEEEecCCCCCceEEE-E Q lcl|Aclame:pro 118 PIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEG-EFKLFRVPAEQGIPIWTDKEHEELEAF-I 195 (492) Q Consensus 118 ~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g-~~~i~~~~p~~~~~i~d~~~~~~~~~~-i 195 (492) |++++..+. ......+-..++++.+...+.+.++.+|+++++|..+..| +|.+..++|.+++- |+.+..+.+... + T Consensus 77 ~p~~~~p~~-l~~~~~D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~~Ii~-W~~~~~g~l~~v~l 154 (452) T protein:vir:94 77 PPVITHPDA-MSKYFEDQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTENILN-WEEDEDGRLLMVVL 154 (452) T ss_pred CceecccHH-HHHHHhcccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechhhhcC-ccccccCCeeEEEE Confidence 999875532 2222223345789999999999999999999999887765 79999999999976 443334444332 2 Q ss_pred Eeeee-ccc---------eeEEEEe--cceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc----CCC Q lcl|Aclame:pro 196 RMYKL-ENE---------TKVEYWD--KVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND----LEI 259 (492) Q Consensus 196 ~~~~~-~~~---------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~----~~~ 259 (492) |.... .+. ..+.+++ +..+..+++...... .+ ....+..+....|+|+.||+|.+.... .+. T Consensus 155 re~~~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ 232 (452) T protein:vir:94 155 REFYTVRDTADRYVQNIRVRYRCLELVDGLLQITVHETQDGK-VW-ELAKTSTIQNVGVTMDYIPFFCITPSGLSMTPAK 232 (452) T ss_pred EEEEEEecCCCcccceeEEEEEEEEEeCCeEEEEEEEccCCc-ee-eeccceeecCCCcccceeEEEEEcCCCCCCCCCc Confidence 22211 111 1112222 222222222111000 00 001233445567899999999986543 356 Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCC-CCcceeeecccC-HHHHHHH Q lcl|Aclame:pro 260 SDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSD-NGGVDTIQVEVP-VENSKKY 337 (492) Q Consensus 260 s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~l~~~~~-~~~~~~~ 337 (492) +.|.++..+.-++.+..|+..+.++..++|++++.|.+... . -.+....++.+++ +++++|++++.+ .+..+.. T Consensus 233 pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~g~~~~~--~--i~iG~~~~~~lpe~~~~~~yie~~g~~i~~~~~~ 308 (452) T protein:vir:94 233 PPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWITGAESQS--T--MHIGSTKAWVIPEVAAKVGFLEFTGQGLQSLEKA 308 (452) T ss_pred cchHHHHHHHHHHhcchhHHHHHHHHcccceeEeecCcCCC--c--eEecccccccCCCCCCcceEEccCchhHHHHHHH Confidence 77999999999999999999999999999999999975432 1 1245556777885 889999998754 4778899 Q ss_pred HHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCC Q lcl|Aclame:pro 338 LDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYN 417 (492) Q Consensus 338 i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~ 417 (492) ++.+++.+...+.-. -....+++.|++|.........+........++.++.+++++++.++|...+ ..+++.-... T Consensus 309 l~~le~~m~~~Ga~l--l~~~~~~~~s~ea~~~~~~~~~s~L~~~a~~~e~al~~~l~~~a~w~g~~~~-~~v~~n~dF~ 385 (452) T protein:vir:94 309 LSEKQAQLASLSARL--IDNSTRGSEATETVKLRYMSETASLKSVTRAVEALLNKAYSCIMDMESMGGT-LNIKLNSAFL 385 (452) T ss_pred HHHHHHHHHHHHHHh--hccCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-eEEEeccccc Confidence 999999998876421 1222245778888877777777788888888999999999999999997543 2333332222 Q ss_pred CCcCHHHHHHHHHHH--hccCChHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 418 KVANTELQVQTAQQS--MGIVSHETVLENH--PFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 418 ~p~d~~e~~~~~~k~--~g~vs~et~l~~l--~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) .+.-..+.++++.++ .|.+|++|+++.| ..|-|+++|.+++..|.+..... ..++....+.+. T Consensus 386 ~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~~e~~~i~~E~~~~~~~--~~~~~~~~~~~~ 452 (452) T protein:vir:94 386 DSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPPGESMGVIPDPPAPEPS--PSNTPPNPSSKA 452 (452) T ss_pred cccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCccCHHHHHHHhhccCcc--cCCCCCCCccCC Confidence 333334566666665 5899999998876 34557888888888885432110 111111111111 No 75 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=99.96 E-value=1.9e-29 Score=178.00 Aligned_cols=441 Identities=11% Similarity=0.085 Sum_probs=271.9 Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-cccccccccc----cccccccccccchHHHHHHHHH Q lcl|Aclame:pro 37 RTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE-PKPVDATGAV----DPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 37 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~-~~~~~~~~~~----~~~~~~~ri~~n~~~~ivd~~~ 111 (492) +.+-++.. |..--..+....++.++.++-|.|...+... ..+.+..... ...+-..-+..|+++.+++.++ T Consensus 1 m~~~~~~~----v~~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~ 76 (513) T protein:vir:97 1 MADKDPKS----PATTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNMVEQTLDTLS 76 (513) T ss_pred CCCCCCCC----CCcCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCChHHHHHHHHh Confidence 22222221 2111123445667777788888886433211 1111111111 1111111245799999999999 Q ss_pred HhhhcCCeeecCCchhH-HH-HHHHHH--hccHHHHHHHHHHHHHhcCeEEEEEEeCCCC------------------ce Q lcl|Aclame:pro 112 SYIVGKPIAFKHTDDEV-VK-RIDEVL--GNRFDDKLHSVLTGASNKGIEWLHPYLDEEG------------------EF 169 (492) Q Consensus 112 ~~l~g~~~~~~~~d~~~-~~-~l~~~~--~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g------------------~~ 169 (492) |++|.+||++..+.+.. .+ +++... .++++.+.+.+++.++.+|+++++|..+..+ +| T Consensus 77 G~vf~k~p~~~~~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~~~~~rP 156 (513) T protein:vir:97 77 GKPFSEPIKLNEDVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDRREGLRP 156 (513) T ss_pred hhhhhcCcccCcCchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHHhhccCc Confidence 99999999987544332 22 334332 3689999999999999999999999776432 37 Q ss_pred EEEEEcccceEEEecCCCCC-ceEEEEEeee---eccc------eeEEEEecceEEEEEEecceeeeccccccccccccc Q lcl|Aclame:pro 170 KLFRVPAEQGIPIWTDKEHE-ELEAFIRMYK---LENE------TKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHF 239 (492) Q Consensus 170 ~i~~~~p~~~~~i~d~~~~~-~~~~~i~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (492) .+..++|.+++-.-.....+ ..+-.+++.. ..++ ..+.++++..+..|+...... ....++..+.. T Consensus 157 y~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~----~~~~e~~~~~~ 232 (513) T protein:vir:97 157 YWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQLWEPVKKSN----AQKEEWALADE 232 (513) T ss_pred eEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeCceEEEEEeecCCC----ccccceEEecC Confidence 89999999997643222222 1222233221 1121 112344444443333221110 11123445556 Q ss_pred eeccCCccceEeecCcc----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhcccee Q lcl|Aclame:pro 240 STGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIK 315 (492) Q Consensus 240 ~~~~~g~iPvv~~~nn~----~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 315 (492) ..|+++.||||++.... .+.+.|.++..|..++.+..|+..+.++..++|++++.|.+.+..... .+....++. T Consensus 233 g~~~l~~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~~~il~~~~~P~l~~~G~~~~~~~~i--~iG~~~~~~ 310 (513) T protein:vir:97 233 WATGLNYVPLVTFYADRQGFMMGKPPLLDLAHLNVAHWQSASDQRHILTVSRFPILACSGASGEDSDPV--VVGPNKVLY 310 (513) T ss_pred CCCcCCceeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhhHHHHHHhcccceeeeecCCcCCCCce--Eeecccccc Confidence 67899999999987543 256779999999999999999999999999999999999765432221 234445666 Q ss_pred cCC-CCcceeeecccC-HHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 316 VSD-NGGVDTIQVEVP-VENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQEL 393 (492) Q Consensus 316 ~~~-~~d~~~l~~~~~-~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~ 393 (492) +++ +++++|++++.+ .......++.+++.|...+..+- ...+++.||++.+.......+.+..+...++.++.++ T Consensus 311 lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm~~~Ga~ll---~~~~~~~Ta~a~~~~~~~~~S~L~~~a~~le~al~~~ 387 (513) T protein:vir:97 311 NPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQMAGYGAEFL---KRKTGGQTATARALDSAEATSDLSAMTGLFEDALAQA 387 (513) T ss_pred CCCCCCcceeeccCchhHHHHHHHHHHHHHHHHHHHHHhh---ccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 775 789999998854 46678899999999988775432 1223578999999999999999999999999999999 Q ss_pred HHHHHHHhccCCcceeeeE--EeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhC---CCC---CCHHHHHHHHHHHHH Q lcl|Aclame:pro 394 LWFVFEHFDIKGEHKDVDI--SFNYNKVANTELQVQTAQQS--MGIVSHETVLENH---PFV---EDLQAELERIEQEQT 463 (492) Q Consensus 394 ~~li~~~~~~~~~~~~i~i--~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l---~~v---~D~~~E~~ri~~E~~ 463 (492) +++++.++|...+...+++ .|..... ..+.++++.++ .|.+|.+|.++.| +.+ .|.+++.++++++.+ T Consensus 388 l~~~a~wlg~~~~~~~v~in~dF~~~~~--~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~~d~d~~~~~e~~~~~~~ 465 (513) T protein:vir:97 388 LDITADWLRLGPNGGTVELVKDYDLEEM--DAPGLQALQVAREKRDISRKTYLNGLRLRGVLPEDFDEDEDWEELMEEIS 465 (513) T ss_pred HHHHHHHhCCCCCccEEEeccccCcccC--CHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCccCCHHHHHHHHHHhhh Confidence 9999999997654333333 2322211 23456666655 5889999998755 222 145566666665544 Q ss_pred HHHHh----h---ccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 464 EYNKQ----L---PNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 464 ~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +.... . ....+.+.+...+.++.+.++.+ T Consensus 466 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (513) T protein:vir:97 466 EAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGGE 501 (513) T ss_pred hccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCC Confidence 33211 1 11111122222222222222222 No 76 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=99.95 E-value=1.1e-26 Score=162.82 Aligned_cols=436 Identities=11% Similarity=0.041 Sum_probs=257.8 Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-ccccc---cc------cccccccccccccchHHHH Q lcl|Aclame:pro 37 RTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP-KPVDA---TG------AVDPLKPDDRMITNFHANL 106 (492) Q Consensus 37 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~-~~~~~---~~------~~~~~~~~~ri~~n~~~~i 106 (492) +.+.... =..+....++.++.++-+.|...+.... .|.+. .. .....+...-+..|+++.+ T Consensus 1 m~~V~~~---------hp~y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~rA~~~n~~~~t 71 (501) T protein:vir:95 1 MPNVSFI---------RPELGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAYLKRAVFYNVARRT 71 (501) T ss_pred CCCCCCC---------CHHHHHHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHHhhccccCchHHHH Confidence 1111100 0123445566677777777765432111 11110 00 0011111111357999999 Q ss_pred HHHHHHhhhcCCeeecCCchhHHHHHHHH--HhccHHHHHHHHHHHHHhcCeEEEEEEeCCCC---------------ce Q lcl|Aclame:pro 107 VDQKVSYIVGKPIAFKHTDDEVVKRIDEV--LGNRFDDKLHSVLTGASNKGIEWLHPYLDEEG---------------EF 169 (492) Q Consensus 107 vd~~~~~l~g~~~~~~~~d~~~~~~l~~~--~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g---------------~~ 169 (492) ++.++|++|.++|+++.. +....+++.. ..++++.+.+.+++.++.+|+++++|..+..+ +| T Consensus 72 ~~~l~G~vf~k~p~~~~p-~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~rP 150 (501) T protein:vir:95 72 LFGLVGQVFMRDPVVKVP-ALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRIRP 150 (501) T ss_pred HHHHhhhhhcCCcceeCc-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccCCc Confidence 999999999999998632 3344444444 23689999999999999999999999875432 37 Q ss_pred EEEEEcccceEEEecCCCCC--ceEEEE-Ee-eeecccee-------EEEEecc--eE-EEEEEecceee-------e-- Q lcl|Aclame:pro 170 KLFRVPAEQGIPIWTDKEHE--ELEAFI-RM-YKLENETK-------VEYWDKV--TV-NYYVYENGSLI-------P-- 226 (492) Q Consensus 170 ~i~~~~p~~~~~i~d~~~~~--~~~~~i-~~-~~~~~~~~-------~~~~~~~--~~-~~~~~~~~~~~-------~-- 226 (492) .+..++|.+++-.-.+...+ .+..++ +. +...++.+ +.+.... .. .+.+|...... . T Consensus 151 y~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~~~~~~~ 230 (501) T protein:vir:95 151 TLYVYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADGSKIPKG 230 (501) T ss_pred EEEEecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCcceecCC Confidence 89999999987643232322 233322 21 12222211 1122211 11 11111111000 0 Q ss_pred ccccccccccccceeccCCccceEeecCcc----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccch Q lcl|Aclame:pro 227 DYSNNLENSKTHFSTGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELP 302 (492) Q Consensus 227 ~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~----~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~ 302 (492) .......+.......|+++.||||.+.... .+.+.|.++..+.-++.+..|+..+.++..++|+++++|.+.+... T Consensus 231 ~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~lA~lni~hy~~ssd~~~~l~~~~~P~l~i~G~~~~~~~ 310 (501) T protein:vir:95 231 NYQQYVVYKPTDAQGKRLTEIPFMFIGSENNDSNPDNPNFYDLASLNMAHYRNSADYEESCYIVGQPTPVLIGLTEEWVT 310 (501) T ss_pred cccccceeeeeccCCCcCCeeeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhHHHHHHHHcccceeeeeCCcccccc Confidence 000111222334456899999999885433 2457788888888888888999999999999999999997664322 Q ss_pred hhH---HhhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 EFK---RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKA 379 (492) Q Consensus 303 ~~~---~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~ 379 (492) ... -.+....++.++++|+++|++.+.+.- .+..++.+++.|...+... . ...+++.||+|.+.......+.+ T Consensus 311 ~~~~~~i~~G~~~~~~lP~~~~~~~ie~~~~~i-~~~~l~~l~~~m~~~Ga~l--l-~~~~~~~Ta~~~~~~~~~~~S~L 386 (501) T protein:vir:95 311 NVLKGSVNFGSRGGIPLPVGADAKLLQASENTM-LKEAMDTKERQMVALGAKL--V-EQKEVQRTATEAELEAASEGSTL 386 (501) T ss_pred cCCCCceeecccccccCCCCCceeEEecChhhH-HHHHHHHHHHHHHHHHHhh--c-cCCccchhHHHHHHHHHHHhHHH Confidence 111 123344567788999999998764333 3667888888887776432 1 22235689999999888889999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCC--cCHHHHHHHHHHH--hccCChHHHHHhC---CCCC-CH Q lcl|Aclame:pro 380 DKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKV--ANTELQVQTAQQS--MGIVSHETVLENH---PFVE-DL 451 (492) Q Consensus 380 ~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p--~d~~e~~~~~~k~--~g~vs~et~l~~l---~~v~-D~ 451 (492) ......++.++.+++++++.++|...+...+++ ++... .-..+.++++.++ .|.+|.+|+++.| +.++ |. T Consensus 387 ~~~a~~le~al~~~l~~~a~w~g~~~~~~~v~i--~~df~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~~v~~~~~ 464 (501) T protein:vir:95 387 SSATKNVSAAFEWALKWAARWVGQADSGVKFEL--NTDFDIARMTPDERRSLVEEWQKGAITFEEMRTGLRKAGVATEDD 464 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEE--ecccccccCCHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCCChhH Confidence 999999999999999999999997654434443 33222 2234456666665 5889999997654 4443 45 Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCC Q lcl|Aclame:pro 452 QAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKE 490 (492) Q Consensus 452 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (492) +.|.++|+.|..+............... ..++ .++.| T Consensus 465 ~~e~e~i~~~~~~~~~~~~~~~~~~~~~-gg~~-~~~~~ 501 (501) T protein:vir:95 465 SKAKEKIAKDTAEAMALATPANVPGDGS-GGDN-VGNSE 501 (501) T ss_pred HHHHHHHHhhhcCcccccccCCCCCCCc-cccc-ccCCC Confidence 6777888776543221111111111111 1111 12222 No 77 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=99.94 E-value=1.2e-25 Score=157.21 Aligned_cols=469 Identities=10% Similarity=0.029 Sum_probs=260.4 Q ss_pred ChhhhHHHHHHHHHh-cCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALI-KGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~ 79 (492) |.- -..-+.|=+ ..+-+|=...|+ .. -..... .|..-=..+....++.++.++-+.|...+... T Consensus 1 ~~~---~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~m~-dV~~~hp~y~a~~~~W~~ird~~~G~~~~r~~ 65 (535) T protein:vir:80 1 MAR---KRTTIRRDVQSKVLIPPQAPPT-SG----------LGPSLP-NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAK 65 (535) T ss_pred CCc---chhhhhhhhhhhcccCCCCcCC-CC----------CCCCCC-CCCcCCHHHHHHHHHHHHHHHHhcChHHHHhc Confidence 100 000011111 111111111111 00 000000 01111123455667777778888887543322 Q ss_pred c-cccccccc---------ccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHH--hccHHHHHHHH Q lcl|Aclame:pro 80 P-KPVDATGA---------VDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL--GNRFDDKLHSV 147 (492) Q Consensus 80 ~-~~~~~~~~---------~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~--~n~~~~~~~~~ 147 (492) . .|.+.-.. ....+-..-+..|+++.+++.++|++|.++++++.. +....+++... .++++.+.+.+ T Consensus 66 g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~vfrk~p~~~~p-~~l~~l~~d~D~~G~~L~~f~~~~ 144 (535) T protein:vir:80 66 REEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKA 144 (535) T ss_pred ccccCCCCCcccCCcCCHHHHHHHHhhccCCChhHHHHHHHhchhhcCCcceecc-HHHHHHHhccCCCCCCHHHHHHHH Confidence 1 11111000 001111111457999999999999999999988543 33444444332 36899999999 Q ss_pred HHHHHhcCeEEEEEEeCCCC-------------ceEEEEEcccceEEEecCCCCC--ceEEEE-Ee-eeeccce------ Q lcl|Aclame:pro 148 LTGASNKGIEWLHPYLDEEG-------------EFKLFRVPAEQGIPIWTDKEHE--ELEAFI-RM-YKLENET------ 204 (492) Q Consensus 148 ~~~~~~~G~~~~~v~~d~~g-------------~~~i~~~~p~~~~~i~d~~~~~--~~~~~i-~~-~~~~~~~------ 204 (492) ++.++.+|+++++|.....+ +|.+..++|.+++-.-.+...+ .+..++ +. +...+.. T Consensus 145 ~~~~l~~G~~~iLVD~P~~~~~~t~ade~~~~~rPy~~~y~ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~ 224 (535) T protein:vir:80 145 LGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYV 224 (535) T ss_pred HHHHHhcCeEEEEEeecCCCCcccHHHHHhcCCCcEEEEechhhccCccccccCCccceeEEEEEEEEEecCCCccccee Confidence 99999999999999776654 3789999999997643332222 343322 21 1122211 Q ss_pred -eEEEEecc-----eEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc----CCCCcHHHHHHHHHHHHH Q lcl|Aclame:pro 205 -KVEYWDKV-----TVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYNR 274 (492) Q Consensus 205 -~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~----~~~s~~~~v~~liD~~~~ 274 (492) .+.++... .+..|..+... ........+..+....|+|+.||||.+.... .+.+.|.++..+.-++.+ T Consensus 225 ~q~RvL~~~~~G~y~v~~~~~~~~~--~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~ 302 (535) T protein:vir:80 225 QQWRVLQLNAEGNYQVERWRRETQE--EMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYR 302 (535) T ss_pred EEEEEEEecCCceEEEEEEEeecCC--ccccccceeecccCCCcccCeeEEEEeecCCCCCCCCccchHHHHHHHHHHhh Confidence 11222221 11111111110 0000011122334567999999999985432 255678899999999999 Q ss_pred HHHHHHHHHHhcCCceEEEecCCcccchhhH----HhhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 275 RLSDLSNTFKDSNELTYVLKNYDDQELPEFK----RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQ 350 (492) Q Consensus 275 ~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~ 350 (492) ..|+..+.++..++|++++.|.+.+...+.. -.+....++.++++++++|+..+.+.-+. ..++.+.+.|...+. T Consensus 303 ~ssd~~~il~~~~~P~l~i~G~~~~~~~~~~~~~~i~iG~~~~~~lP~~~~~~~~e~~~~~~a~-~~l~~~e~qM~~lGa 381 (535) T protein:vir:80 303 NSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIAMGA 381 (535) T ss_pred chhHHHHHHHHhcCceeeeecCchhhhhcCCCCcceEecCcccccCCCCCCcceeeeccchhHH-HHHHHHHHHHHHHHH Confidence 9999999999999999999997654322211 12344566778999999999876554443 457777777777654 Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCC--CCcCHHHHHHH Q lcl|Aclame:pro 351 AVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYN--KVANTELQVQT 428 (492) Q Consensus 351 ~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~--~p~d~~e~~~~ 428 (492) ..-. ...++.++.+-+...+...+.+......++.++.+++++++.++|...+...++|..++. ...-..+.+++ T Consensus 382 ~ll~---~~~~~~Ta~~a~~~~~~~~S~L~~~a~~le~al~~aL~~~A~w~G~~~~~~~~~i~~n~dF~~~~ld~~~~~a 458 (535) T protein:vir:80 382 NLLV---KSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAE 458 (535) T ss_pred Hhhc---cCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEEeccccccccCCHHHHHH Confidence 3321 112344444445555666777888889999999999999999999765444454443322 12222345666 Q ss_pred HHHH--hccCChHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHHhhccccC--CCCCCCC----cCCCCCCCCC Q lcl|Aclame:pro 429 AQQS--MGIVSHETVLENH---PFV---EDLQAELERIEQEQTEYNKQLPNLDD--GGADSAQ----QQERSNNKES 491 (492) Q Consensus 429 ~~k~--~g~vs~et~l~~l---~~v---~D~~~E~~ri~~E~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~ 491 (492) +.++ .|.+|.+|++..| +.+ .+.++|+.||+.|-.+.........+ .++.+.. .+.+++..++ T Consensus 459 ll~~~~~G~Is~et~~~~L~r~gvl~~~~~~eee~~ri~~E~~~~~~~~g~~~d~~~~g~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:80 459 LILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) T ss_pred HHHHHhcCCCCHHHHHHHHHhCCCCCcccchHHHHHHHHhhhhhccccCCCCCCCCCCCCCcCcccCCccccccCCC Confidence 6665 5889999998755 333 24578888898886543332221111 1111111 1111111222 No 78 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=99.92 E-value=3.3e-24 Score=149.30 Aligned_cols=433 Identities=11% Similarity=0.060 Sum_probs=251.2 Q ss_pred HhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc---ccccccc--ccccccccchHHHHHHH Q lcl|Aclame:pro 35 IVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDA---TGAVDPL--KPDDRMITNFHANLVDQ 109 (492) Q Consensus 35 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~---~~~~~~~--~~~~ri~~n~~~~ivd~ 109 (492) +...+.. ..-|..-=..+....++.++.++-|.|......+..+... ......+ +-..-+..|+++.+++. T Consensus 1 ~~~~~~~----~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~ 76 (489) T protein:vir:78 1 MLTENGQ----GSGVKTKHREWLHYAPKWQKVRHALAGELVSYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSG 76 (489) T ss_pred CccCCCc----cCCCCccCHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCCCCCChHHHHHHHhccccCChHHHHHHH Confidence 0011100 0011111123455667777788888885421112111111 0000001 11111357999999999 Q ss_pred HHHhhhcCCeeecCCchhHHHHHHHHH--hccHHHHHHHHHHHHHhcCeEEEEEEeCCCC------------ceEEEEEc Q lcl|Aclame:pro 110 KVSYIVGKPIAFKHTDDEVVKRIDEVL--GNRFDDKLHSVLTGASNKGIEWLHPYLDEEG------------EFKLFRVP 175 (492) Q Consensus 110 ~~~~l~g~~~~~~~~d~~~~~~l~~~~--~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g------------~~~i~~~~ 175 (492) ++|++|.++|+++.. +....+++... .++++.+.+.+++.++.+|+++++|..+..+ +|.+..++ T Consensus 77 l~G~vfrk~p~~~~p-~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~~~~rPy~~~~~ 155 (489) T protein:vir:78 77 MVGSVMRKEPEINIP-KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNAGLLNPTIAFYT 155 (489) T ss_pred HhchhhcCCcceecc-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHHhcCCcEEEEec Confidence 999999999988643 22444444332 3689999999999999999999999887665 58899999 Q ss_pred ccceEEEecCCCCC--ceEEEEEeeee----cc-c-------eeEEEEecce-----EEEEEEecceeeecccccccccc Q lcl|Aclame:pro 176 AEQGIPIWTDKEHE--ELEAFIRMYKL----EN-E-------TKVEYWDKVT-----VNYYVYENGSLIPDYSNNLENSK 236 (492) Q Consensus 176 p~~~~~i~d~~~~~--~~~~~i~~~~~----~~-~-------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 236 (492) |.+++-.-.....+ .+..+ ++... +. . ..+.+++... +..|+...... ......... T Consensus 156 ~~~IinW~~~~v~G~~~Lt~v-~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~---~~~~~~~~~ 231 (489) T protein:vir:78 156 TENIVNWRLTRVGSVNRVTMV-VLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGG---AQEDVVEIY 231 (489) T ss_pred hhhhcCceeeeeCCccceeEE-EEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCc---ccceeeEEe Confidence 99997643222222 34332 22221 11 1 1122333221 11111111100 000000112 Q ss_pred ccceeccCCccceEeecCcc----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHH------ Q lcl|Aclame:pro 237 THFSTGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKR------ 306 (492) Q Consensus 237 ~~~~~~~~g~iPvv~~~nn~----~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~------ 306 (492) +....|+++.||||.+.... .+.+.|.++..|.-++.+..|+..+.++..++|++++.|.+......... T Consensus 232 ~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~i~G~d~~~~~~~~~~~~~~i 311 (489) T protein:vir:78 232 PDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGENLTPQAFKEANPNGI 311 (489) T ss_pred ccCCCCccCeeeEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCccCCcccccccCccce Confidence 34456889999999986432 24567889999998999999999999999999999999975432111111 Q ss_pred hhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHh-CCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 307 LLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFG-QAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARK 385 (492) Q Consensus 307 ~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a-~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~ 385 (492) .+.....+.++.+|+++|++.+.+.. ....++.+++.+...+ .+.. . +++.||++.+.......+........ T Consensus 312 ~~g~~~~~~lp~~~~~~~ie~~~~~~-~r~~l~~le~qm~~lGa~l~~----~-~~~~Ta~~~~~~~~~~~S~L~~~a~~ 385 (489) T protein:vir:78 312 KFGSRRGHNLGYGGSAQLIQAGENNL-ARQNMLDKEQQAIQIGAQLIT----P-TQQITAQSARIQRGADTSVMATIARN 385 (489) T ss_pred eeCCcccccCCCCCCcceeccCcchH-HHHHHHHHHHHHHHHhhhhcc----C-CcchhHHHHHHHHHHhhHHHHHHHHH Confidence 12334456678889999998875443 3666777777777654 3331 2 34688899888888889999999999 Q ss_pred HHHHHHHHHHHHHHHhccCCcc-eee--eEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCC--CCCCHHHHHHHH Q lcl|Aclame:pro 386 AKVAIQELLWFVFEHFDIKGEH-KDV--DISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHP--FVEDLQAELERI 458 (492) Q Consensus 386 ~~~~l~~~~~li~~~~~~~~~~-~~i--~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~--~v~D~~~E~~ri 458 (492) ++.++.+++++++.++|.+.+. ..+ ...|.. ..-..+.++++.++ .|.+|.+|.+..|- .|-|+. .+.+ T Consensus 386 ~e~al~~~l~~~a~w~G~~~~~~~~i~~n~dF~~--~~~d~~~~~al~~~~~~G~is~~t~~~~L~~~gv~d~~--~e~~ 461 (489) T protein:vir:78 386 VSQAYTDALRWVAVMLGKPEDTEVEFRLNMDFFL--EPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDWT--DADI 461 (489) T ss_pred HHHHHHHHHHHHHHHcCCCCCCceEEEeecccCc--ccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcc--HHHH Confidence 9999999999999999976432 222 223422 22224456666665 68999999987552 232321 2222 Q ss_pred HHHHHHHHHhhccccCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 459 EQEQTEYNKQLPNLDDGGADSAQQQERSNNKES 491 (492) Q Consensus 459 ~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (492) +.|.++. +...+....++-.+...+.|. T Consensus 462 ~~ei~~~-----~~~~~~~~~g~~~~~~q~~~~ 489 (489) T protein:vir:78 462 KDAVADQ-----PLPVATEVQGEIPQSAQQQEK 489 (489) T ss_pred HHHHhhc-----CCCcccCCcccCCCCcccccC Confidence 2222221 111122222222222222222 No 79 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=99.90 E-value=3.7e-23 Score=143.59 Aligned_cols=433 Identities=11% Similarity=0.053 Sum_probs=252.9 Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc---ccccccc--ccccccccchHHHH Q lcl|Aclame:pro 32 FDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDA---TGAVDPL--KPDDRMITNFHANL 106 (492) Q Consensus 32 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~---~~~~~~~--~~~~ri~~n~~~~i 106 (492) |-...-.+++ |..-=..+....++.++.++-|.|......+..+... ......+ +-..-+..|+++.+ T Consensus 1 ~~~~~~~~~~-------V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~t 73 (491) T protein:vir:95 1 MLTANGQGSG-------VKTKHREWLHYAPKWQKVRHALAGDLVGYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRT 73 (491) T ss_pred CcccCCccCC-------CCccCHHHHHHHHHHHHHHHHhcCcchhhcccCCCcCCCCCCCHHHHHHHHhcccCCChHHHH Confidence 0000001111 1111123455667777788888885321111111110 0001101 11111357999999 Q ss_pred HHHHHHhhhcCCeeecCCchhHHHHHHHHH--hccHHHHHHHHHHHHHhcCeEEEEEEeCCCC------------ceEEE Q lcl|Aclame:pro 107 VDQKVSYIVGKPIAFKHTDDEVVKRIDEVL--GNRFDDKLHSVLTGASNKGIEWLHPYLDEEG------------EFKLF 172 (492) Q Consensus 107 vd~~~~~l~g~~~~~~~~d~~~~~~l~~~~--~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g------------~~~i~ 172 (492) ++.++|++|.++|+++.. +....+++... .++++.+.+.+++.++.+|+++++|..+..+ +|.+. T Consensus 74 l~~l~G~vfrk~p~~~~p-~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~Ade~~~~~rPy~~ 152 (491) T protein:vir:95 74 LSGMVGSVMRKEPEINIP-KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAAEQNAGLLNPTIA 152 (491) T ss_pred HHHHhchhhcCCceeecc-HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHHHHHHhcCCcEEE Confidence 999999999999998643 23444444432 3689999999999999999999999887654 48899 Q ss_pred EEcccceEEEecCCCC--CceEEEEEeeee---cc--c-------eeEEEEec---c--eEEEEEEecceeeeccccccc Q lcl|Aclame:pro 173 RVPAEQGIPIWTDKEH--EELEAFIRMYKL---EN--E-------TKVEYWDK---V--TVNYYVYENGSLIPDYSNNLE 233 (492) Q Consensus 173 ~~~p~~~~~i~d~~~~--~~~~~~i~~~~~---~~--~-------~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~ 233 (492) .++|.+++-.-..... ..+..+ ++... .+ . ..+.++.. . .+..|+..... ....... T Consensus 153 ~~~~~~IinW~~~~v~g~~~L~~v-~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~g~~~~~v~r~~~~g---~~~~~~~ 228 (491) T protein:vir:95 153 FYTTENIVNWRLTRVGSVNRVTMV-VLRETWEYHEPGNEFETKYGEQYRVLDIDTDGNYRQRLFRFDAEG---GAQEEVV 228 (491) T ss_pred EechhhhcCceeeeeCCceeeeEE-EEEEeEEeecCCCCcccceEEEEEEEeecCCCceEEEEEEEcCCC---cceeeee Confidence 9999999764322222 233332 22221 11 1 11122211 1 11111111100 0001111 Q ss_pred cccccceeccCCccceEeecCcc----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHH--- Q lcl|Aclame:pro 234 NSKTHFSTGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKR--- 306 (492) Q Consensus 234 ~~~~~~~~~~~g~iPvv~~~nn~----~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--- 306 (492) +..+....|+++.||||.+.... .+.+.|.++..|.-++.+..|+..+.++..++|++++.|.+....+.... T Consensus 229 ~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~~~G~d~~~~~~~~~~~~ 308 (491) T protein:vir:95 229 EIYPDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGDNLTPQSFKEANP 308 (491) T ss_pred eeeecCCCcccCeeEEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCcccCcchhhccCc Confidence 22234456899999999986432 24567889999988999999999999999999999999965432221111 Q ss_pred ---hhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHh-CCCCCCccccccchhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 307 ---LLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFG-QAVDFSSDKFGSAPSGVALEFLYTNLNLKADKL 382 (492) Q Consensus 307 ---~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a-~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~ 382 (492) .+.....+.++.+++++|+..+.+.- ....++.++..+...+ .+.. . +++.||++.+.......+..... T Consensus 309 ~~i~~g~~~~~~lP~~~~~~~ie~~~~~~-~~~~l~~~e~qm~~~Ga~l~~----~-~~~~Ta~~~~~~~~~~~S~L~~~ 382 (491) T protein:vir:95 309 NGIKFGSRCGHNLGYGGSAQLIQAGENNL-ARQNMLDKEQQAIQIGAQLIT----P-SQQITAESARIQRGADTSVMATI 382 (491) T ss_pred ceeEecCcCCcCCCCCCccceeecCcchH-HHHHHHHHHHHHHHHHHHhcc----C-CcchhHHHHHHHHHHhhHHHHHH Confidence 11223355677889999998875443 3566677777666653 3321 1 34689999998888889999999 Q ss_pred HHHHHHHHHHHHHHHHHHhccCCc-ceee--eEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCC--CCC--CHHH Q lcl|Aclame:pro 383 ARKAKVAIQELLWFVFEHFDIKGE-HKDV--DISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHP--FVE--DLQA 453 (492) Q Consensus 383 ~~~~~~~l~~~~~li~~~~~~~~~-~~~i--~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~--~v~--D~~~ 453 (492) ...++.++.+++++++.++|...+ ...+ ...|.. ..-..+.++++.++ .|.+|.+|.+..|- .|- +.++ T Consensus 383 a~~~e~al~~~l~~~a~w~G~~~~~~v~i~~n~dF~~--~~~~~~~~~all~~~~~G~is~~t~~~~L~~~~vl~~~~e~ 460 (491) T protein:vir:95 383 ARNVSQAYTDALRWVAMMLGKPEDSEVEFQLNMDFFL--QPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDWTDED 460 (491) T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeccccc--ccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHH Confidence 999999999999999999997643 2222 223322 22224457777665 68999999987542 232 3456 Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCCcCCC Q lcl|Aclame:pro 454 ELERIEQEQTEYNKQLPNLDDGGADSAQQQER 485 (492) Q Consensus 454 E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 485 (492) +.++|++|.-. ........+..++..++..+ T Consensus 461 ~~~~ie~~~~~-~~~~~~~~~~~~~~~~~~~~ 491 (491) T protein:vir:95 461 ILNAIEDAPLP-SGAVTQVAGEIPQAAQQQQE 491 (491) T ss_pred HHHHHHhcCCC-CCccccccccchhhhhhccC Confidence 66666544311 01111122222222222222 No 80 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=99.88 E-value=4.9e-23 Score=142.89 Aligned_cols=433 Identities=12% Similarity=0.068 Sum_probs=234.5 Q ss_pred HHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC--Cccc--cccccc Q lcl|Aclame:pro 9 QVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISI-GQEYYEQR--PDIV--KEPKPV 83 (492) Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-~~~YY~G~--~~i~--~~~~~~ 83 (492) -+---|+|--.+.-+.+....+....... -+++.... .. .++. ...|---- ++.. +.+.+. T Consensus 1 ~~~~~~~~~~~~~m~V~~~hp~y~a~~~~--------W~~~~d~g---~~---~~k~~g~~YLPk~~~~~~~~~~d~~y~ 66 (488) T protein:vir:96 1 MLKCLYIKHRGFFMLTPIYHPDYLVNAPQ--------WLRNLDCV---MD---NIKRKKQTYLPNLGAIPPEAKTDPKVT 66 (488) T ss_pred CceeEEEeecceeecccccCHHHHHHhhh--------hhHhhhhh---hH---HHHHhhhhcCCCCCCccccccCcchhh Confidence 00001112111111112112222211100 00010000 00 0100 01111000 0000 000000 Q ss_pred ccccccccccccc---c-cccchHHHHHHHHHHhhhcCCeeecCCc-hhHHHHHHHHH--hccHHHHHHHHHHHHHhcCe Q lcl|Aclame:pro 84 DATGAVDPLKPDD---R-MITNFHANLVDQKVSYIVGKPIAFKHTD-DEVVKRIDEVL--GNRFDDKLHSVLTGASNKGI 156 (492) Q Consensus 84 ~~~~~~~~~~~~~---r-i~~n~~~~ivd~~~~~l~g~~~~~~~~d-~~~~~~l~~~~--~n~~~~~~~~~~~~~~~~G~ 156 (492) .-.........+. | +..|+++.+++.++|++|.++|++...+ +....+++... .++++.+.+.+++.++.+|+ T Consensus 67 ~~~~~~~~~y~~~~~~rA~~~n~~~~tl~~l~G~vfrk~p~~~~~~~~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~ 146 (488) T protein:vir:96 67 ALAAKIEKDWEDLTWRLANYVNIVNPTMNAITGAVMRREPEFDTMDNPVLIGLRDNIDGKGNGIDQECKQALNALQWGSR 146 (488) T ss_pred hhhccchhhhHhhhhhccccCchhHHHHHHhcchhhccCceeccCCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCe Confidence 0000000000000 1 2469999999999999999999998764 45555555443 46899999999999999999 Q ss_pred EEEEEEeCCCC-----------ceEEEEEcccceEEEecCCCCC--ceEEEEEeee---eccceeEEEEecceEEEEEEe Q lcl|Aclame:pro 157 EWLHPYLDEEG-----------EFKLFRVPAEQGIPIWTDKEHE--ELEAFIRMYK---LENETKVEYWDKVTVNYYVYE 220 (492) Q Consensus 157 ~~~~v~~d~~g-----------~~~i~~~~p~~~~~i~d~~~~~--~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 220 (492) ++++|..++.+ +|.+..++|.+++-.-.+...+ .+.. +++.. ..+.. .......+.++.+. T Consensus 147 ~~ilVD~P~~~~T~ade~~~~~rPy~~~~~a~~IinW~~~~v~G~~~L~~-v~lrE~~~~~D~~--~~~~~~~~~~~~l~ 223 (488) T protein:vir:96 147 CGWLVRSHPESATMADWNKGKKLPTAAFYDALHIIDWEVEYIDGEEKLTY-LSLLEDYQERDGG--TYVSKQRLINHRLV 223 (488) T ss_pred EEEEEecCCCcCCHHHHHHhcCCcEEEEechhhhcCcceeccCCceeeEE-EEEEEEEEeccCC--CcccceEEEEEEEE Confidence 99999887654 4889999999997653322222 2333 22221 21211 01111222222222 Q ss_pred cce-eeecc---ccccccccccceeccCCccceEeecCcc----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE Q lcl|Aclame:pro 221 NGS-LIPDY---SNNLENSKTHFSTGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV 292 (492) Q Consensus 221 ~~~-~~~~~---~~~~~~~~~~~~~~~~g~iPvv~~~nn~----~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~ 292 (492) .+. .+... .....+.......|+|+.||||++.... .+.+.|.++..|.-++.+..|+..+.+.....|+++ T Consensus 224 ~g~~~v~~~~~~~~~~e~~~~~~g~~~l~~IP~v~~~~~~~~~~~~~pPLldLA~lnl~Hy~~ssd~~~il~~~~~p~lv 303 (488) T protein:vir:96 224 DGLCEFQEVTDDEYSDEWTPVLINSKQSDTIPFFLASSQSNEWCIDSTPLTSLAEISLSIYVMNAYSNKAMILANEAKWM 303 (488) T ss_pred CcEEEEEEEecCCcccceEeecCCCcccCeeEEEEEecCCCCCCCCCCchHHHHHHHHHHHhhhhHHHHHHHhcCCceee Confidence 221 11111 1111222223456799999999986433 256778899999999999999999999999999988 Q ss_pred EecCCcccchhhHH--hhhh---ccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhC-CCCCCccccccchhHH Q lcl|Aclame:pro 293 LKNYDDQELPEFKR--LLRY---YGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQ-AVDFSSDKFGSAPSGV 366 (492) Q Consensus 293 ~~g~~~~~~~~~~~--~~~~---~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~-~p~~~~~~~~~~~Sg~ 366 (492) +.+.+.. .+.... .... .......+.|+++|+..+.+.- .+..++.+++.+...+. ++. . +++.||+ T Consensus 304 ~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~e~~~~~l-~~~~l~~l~~qm~~~Ga~l~~----~-~~~~Ta~ 376 (488) T protein:vir:96 304 VDMGDMN-KTMASEMNPLGFTLAGRMPYYVKNGDVKVIQAQFSPE-TENKVEKLFEQAVKVGASLFT----Q-QSNETAT 376 (488) T ss_pred eccCCCC-cccccccccceeeecccccccccCCceeecCCchhHH-HHHHHHHHHHHHHHHhHhhcc----C-CCcchHH Confidence 6432211 111111 1111 1112223467788876554322 36668888888866553 231 1 3457888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---eeeeEEeCCC-CCc-CHHHHHHHHHHH--hccCChH Q lcl|Aclame:pro 367 ALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEH---KDVDISFNYN-KVA-NTELQVQTAQQS--MGIVSHE 439 (492) Q Consensus 367 Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~---~~i~i~f~~~-~p~-d~~e~~~~~~k~--~g~vs~e 439 (492) +.........+........++.++.+++++++.++|..... ..+++..++. .+. -..+.++++.++ .|.||.+ T Consensus 377 ~~~~~~~~~~S~L~~~a~~le~al~~~l~~~A~w~g~~~~~~~~~~~~~~in~dF~~~~ld~~~~~al~~~~~~G~Is~~ 456 (488) T protein:vir:96 377 GAAIRSGSSTASMATLGNNVEDTVRNMLRFIMRYFEGTNLYVNPDELVFKLNRDYFDVEVNPQMLQVAYAAMMEGNLPQV 456 (488) T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCccceEEEeccCCCCccCCHHHHHHHHHHHhcCCCCHH Confidence 88888888899999999999999999999999999976532 2344443332 121 134467777766 5899999 Q ss_pred HHHHhC--CCC-C---CHHHHHHHHHHHHHHHHHhhccccC Q lcl|Aclame:pro 440 TVLENH--PFV-E---DLQAELERIEQEQTEYNKQLPNLDD 474 (492) Q Consensus 440 t~l~~l--~~v-~---D~~~E~~ri~~E~~~~~~~~~~~~~ 474 (492) |.++.| ..| + +.++|.++|+++- .+. T Consensus 457 t~~~~L~~~gvl~~d~~~e~~~~~ie~~g---------~~~ 488 (488) T protein:vir:96 457 SWFELLKRARVVRGDMSKEEFDEHIAELG---------FGM 488 (488) T ss_pred HHHHHHHhCCcCCccCCHHHHHHHHhhcC---------CCC Confidence 998754 223 1 3455555555321 111 No 81 >protein:vir:93630 Length: 776 # NCBI annotation: Bcep22gp51 # Family: family:all:487 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944280;genbank:gi:38640357;genbank:GeneID:2658279 Probab=99.83 E-value=1e-20 Score=130.14 Aligned_cols=465 Identities=14% Similarity=0.105 Sum_probs=223.2 Q ss_pred hcCCcee--------ccCCC----cHHHHHHHHhhcCCChhhHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 15 IKGGNIL--------YPSQP----TQTEIFDAIVRTNNKPETLEEMIVRYIK-------QHLEKLPEISIGQEYYEQRPD 75 (492) Q Consensus 15 ~~~~~~~--------~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~i~-------~~~~~~~~~~~~~~YY~G~~~ 75 (492) |=+.|.. -.|++ +....-........+.+...+++.+++. .+...+....+..+||.|+|= T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw 80 (776) T protein:vir:93 1 MFDLNDKDSTQLVPARTDEGELSPGEDAAQREKPANPLDSEQAVELHSRLLSYYRQELSRQQDNRAEMAVDEDYYDNIQW 80 (776) T ss_pred CCCccccccccccccccccccCCCCCcccchhcccCCCCCHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCCCC Confidence 2222220 01121 1112222222223333333344444333 233345555678899999861 Q ss_pred cccccccccccccccccccccccccchHHHHHHHHHHhhhcCCee--ecCC---chhHHHHHH----HHH-hccHHHHHH Q lcl|Aclame:pro 76 IVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIA--FKHT---DDEVVKRID----EVL-GNRFDDKLH 145 (492) Q Consensus 76 i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~--~~~~---d~~~~~~l~----~~~-~n~~~~~~~ 145 (492) .... ........++ .+++|..+.+|+..+|+...+.+. +.+. +.+..+.++ .+. .|++..... T Consensus 81 -~~~~----~~~l~~~g~p--~~~~N~i~~~i~~v~g~~~~nr~~~~~~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~~ 153 (776) T protein:vir:93 81 -SQDE----IDELKERGQA--PTVYNVISQSVNWIIGSEKRGRSDFKVLPRRKDGGKAAERKTALLKYLSDVNHTPFERS 153 (776) T ss_pred -CHHH----HHHHHhcCCc--eEEecchHHHHHHHHHHHHhCCcceEEecCChhHHHHHHHHHHHHHHHHHhhcHHHHHH Confidence 1100 0111112222 478899999999999998876544 4333 333333333 333 368888899 Q ss_pred HHHHHHHhcCeEEEEEEeCCC--C-ceEEEEEcccceEEEecCCCCC----ceEEEEE-eeeec---------------- Q lcl|Aclame:pro 146 SVLTGASNKGIEWLHPYLDEE--G-EFKLFRVPAEQGIPIWTDKEHE----ELEAFIR-MYKLE---------------- 201 (492) Q Consensus 146 ~~~~~~~~~G~~~~~v~~d~~--g-~~~i~~~~p~~~~~i~d~~~~~----~~~~~i~-~~~~~---------------- 201 (492) .+..+++++|.||+-|+.+.+ + .+++.+++|.+++. |+.... ...++++ .|... T Consensus 154 ~af~d~~~~G~G~~~v~~d~~~~~~~~~~~~~~p~~i~~--Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~p~~~~~~~~ 231 (776) T protein:vir:93 154 MAFEETTKAGIGWLESQVQDENDGEPIYAGAESWRNILW--DSTYRRLDMDDCRYIFRVKWVDLDVMLAIFPERAAQLRA 231 (776) T ss_pred HHHHHhhhcCcceEEEEeeccCCCCceEeeccChhheee--ccccccCCHHHHhhhhhhccCCHHHHHHhcCCchHHHHH Confidence 999999999999999987653 3 34567788888764 432211 1111111 10000 Q ss_pred ------------c---------------------------c---eeEEEEecceEEEEEEec--c---eeeecc------ Q lcl|Aclame:pro 202 ------------N---------------------------E---TKVEYWDKVTVNYYVYEN--G---SLIPDY------ 228 (492) Q Consensus 202 ------------~---------------------------~---~~~~~~~~~~~~~~~~~~--~---~~~~~~------ 228 (492) + . ..+++|+...+...+... + ....+. T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~E~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 311 (776) T protein:vir:93 232 AAVDNFETWGTDDIDGDDAMDSPEYERSMNSVTAGAVAYARKRVRMIEAWFRMPVRVQRLKGRNSDFRGEVFDPNDERHV 311 (776) T ss_pred hhhhcccccchhcccccccccccccccccccccccccccCCCeEEEEEEEEeeeeehhhcccccccccceeecccchHHH Confidence 0 0 012223222111111000 0 000000 Q ss_pred -cc-------------------ccccccc--cceeccCCccceEeecCc-----cCCCCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 229 -SN-------------------NLENSKT--HFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRLSDLSN 281 (492) Q Consensus 229 -~~-------------------~~~~~~~--~~~~~~~g~iPvv~~~nn-----~~~~s~~~~v~~liD~~~~~~s~~~~ 281 (492) .. -.+.... ...+.+.+.+|+|++... ..+.|.+..+++.++.+|...|.+.+ T Consensus 312 ~~~~~g~~~~~~~~~~~v~~~~~~g~~~l~~~~~p~~~~~~Pfv~~~~~~~~~~~~~~G~v~~~~d~Q~~~N~~~s~~~~ 391 (776) T protein:vir:93 312 LEVESGRAVLAVSPMMRMHCAIMTTRDLMWAGPSPYRHNRYPFTPIWGFRRARDGMPYGVIRFMRGMQDDVNKRLSKALY 391 (776) T ss_pred HHhhcCceeehheeeeeeEEEEEecchhhhccCCCCCCCccceEEecCceecccccccchHHhhhHHHHHHHHHHHHHHH Confidence 00 0001111 112344578999987653 24789999999999999999999988 Q ss_pred HHHhcCCceEEEecCCcccchhhHHh-hhhccceecCCCC--cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccc Q lcl|Aclame:pro 282 TFKDSNELTYVLKNYDDQELPEFKRL-LRYYGAIKVSDNG--GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDK 358 (492) Q Consensus 282 ~~~~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~ 358 (492) .+. +.++++..|.... .+++... .+.+.++.+..++ .+++.....-..++...++.+...|...+++.+.+.+. T Consensus 392 ~l~--~~~~~~~~gav~~-~d~~~~~~~rp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGi~~~~~G~ 468 (776) T protein:vir:93 392 ILS--TNKVLMEEGAVDD-IDEFRREAARPDAVMTVKNGKLGAVKMDVDRDLAPAHLELASRSIQMIQQVGGVTDEMLGR 468 (776) T ss_pred hhc--CCceeeccccccc-hHHHHHhcccCCceeeeCCccccccccccCcCccHHHHHHHHHHHHHHHHhhCcChHHhCC Confidence 774 4566666664332 2333322 3445566665544 33443322223567778888999999999988888887 Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------------cce--------------- Q lcl|Aclame:pro 359 FGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKG---------------EHK--------------- 408 (492) Q Consensus 359 ~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~---------------~~~--------------- 408 (492) .+++.||+|+...............+.|..+++++.++++.++-... ++. T Consensus 469 ~~n~~Sg~ai~~~~~~~~~~~~~~~dn~~~~~~~~~~~~l~li~~~~~~~r~~ri~~~~~~~~~v~in~~~~~nd~~~~~ 548 (776) T protein:vir:93 469 TTNAVSGVAIQARQEQGSVATNKLFDNLRLAFQQHGEKELSLIEQYMTEEKQFRITNSRGNPEYVTVNDGLPENDITRTK 548 (776) T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEEeecCCCcceEEecccchhhhhccce Confidence 77889999999887777777777777777777777777665542111 010 Q ss_pred -eeeEEeCCCCCcCHHHHHHHHHHHhccCChH-------HHHHhCCCCCCHHHHHHHHHHHH------------------ Q lcl|Aclame:pro 409 -DVDISFNYNKVANTELQVQTAQQSMGIVSHE-------TVLENHPFVEDLQAELERIEQEQ------------------ 462 (492) Q Consensus 409 -~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~e-------t~l~~l~~v~D~~~E~~ri~~E~------------------ 462 (492) +|.|.=.+..+.-..+..+.++.+.+.+..+ .+++..++ .+.++-.+++++.. T Consensus 549 ~dv~v~~~~~~~s~r~~~~~~l~ql~~~~~p~~~~~~~~~~~e~~d~-p~~~e~~~~l~~~~~~~~p~q~~~~~e~~~~q 627 (776) T protein:vir:93 549 ADFIIDEAEWRATMRQAAVAELMEVIGKMPPEIALTMLDLLVENMDI-PNRDELVKRIRAVNGQKDPDQDEPTPEEIARE 627 (776) T ss_pred eeEEEeecccchhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHhcCc-cchHHHHHHHHHhhcccccchhhcchhHHHHH Confidence 1111112222221222333344443323222 11222111 11111112221100 Q ss_pred ------HHHHHhhccccCCC--CCC-----CCc----CCCCCCCCCC Q lcl|Aclame:pro 463 ------TEYNKQLPNLDDGG--ADS-----AQQ----QERSNNKESE 492 (492) Q Consensus 463 ------~~~~~~~~~~~~~~--~~~-----~~~----~~~~~~~~~e 492 (492) .............. ... ..+ +........+ T Consensus 628 q~q~~~~q~q~~~~~a~~~~~qa~a~~~~aea~~~~aqa~~~~~~a~ 674 (776) T protein:vir:93 628 QAQQQQQQYNDALAIATLEEQQAKARKAAAEAQVAEAKAKHISRMAI 674 (776) T ss_pred HHhhHHHHHHHHHhhhhhhHhhHHHHHHHHHHHHHhhhhhhhhhcch Confidence 00000000000000 000 000 0000000000 No 82 >protein:vir:108295 Length: 711 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552284;genbank:gi:160700609;genbank:GeneID:5758811 Probab=99.81 E-value=1.7e-18 Score=118.06 Aligned_cols=465 Identities=13% Similarity=0.050 Sum_probs=233.2 Q ss_pred HHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCCcccccccc Q lcl|Aclame:pro 10 VAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIK-------QHLEKLPEISIGQEYYEQRPDIVKEPKP 82 (492) Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-------~~~~~~~~~~~~~~YY~G~~~i~~~~~~ 82 (492) +||. .|.+.--+++ +...-...-+.+...+++.++.. .+.+.+....+-.+||.|+| +..... T Consensus 1 ~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Q-w~~~~~- 70 (711) T protein:vir:10 1 MAKK-------QKKSRVEQLY-AKKAKVYAKNNDDDRALLATARERARDGATYWKDNWEAAEDDLKFLGGEQ-WPSQVR- 70 (711) T ss_pred CCcc-------cccccccchh-HHHHHhcccCcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-CCHHHH- Confidence 1111 1111111111 22222222223333444444433 33445666677899999975 211111 Q ss_pred ccccccccccccccccccchHHHHHHHHHHhhhcCCeee--cC-------------------------CchhHHHHHHH- Q lcl|Aclame:pro 83 VDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF--KH-------------------------TDDEVVKRIDE- 134 (492) Q Consensus 83 ~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~--~~-------------------------~d~~~~~~l~~- 134 (492) .......+| .+.+|..+.+|+..+|+-..+.+.+ .+ ++.+..+.++. T Consensus 71 ---~~l~~~g~p--~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ae~l~~~ 145 (711) T protein:vir:10 71 ---TERELEQRP--CLVNNVLPTFVDQVLGDQRQNRPAIKVSSTEVTRVPDAESGEDTTLKISNVAGKNDYELAEVFTGL 145 (711) T ss_pred ---HHHHhcCCC--cEEEcchHHHHHHHhhhHhhCCcceEEecccccchhhhhhhhccccccccCCChhHHHHHHHHHHH Confidence 011112222 4678999999999999998776555 22 22334444443 Q ss_pred ---HHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC------CCceEEEEE-cccceEEEecCCCCC----ceE-EEEEee Q lcl|Aclame:pro 135 ---VLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE------EGEFKLFRV-PAEQGIPIWTDKEHE----ELE-AFIRMY 198 (492) Q Consensus 135 ---~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~------~g~~~i~~~-~p~~~~~i~d~~~~~----~~~-~~i~~~ 198 (492) +.+ ++.......+..+++++|.||+-|+.|. +|+++|+.+ +|.+++ ||+.... ... ++++.| T Consensus 146 ~~~~~~~~~~~~~~s~af~d~~~~G~G~~ev~~d~~~~d~~~~e~~i~~v~~p~~v~--~Dp~a~~~D~sDar~~~~~~~ 223 (711) T protein:vir:10 146 IKNIEYNCDAETEYDIAFQGAVESGMGYLRVRSDYLADDSFEQDLIIEAIQNQFSVT--IDPDAKKRDRSDMNWCLIDDT 223 (711) T ss_pred HHHHHHhcChhHHHHHHHHHhhhcCcceEEEEecccCCCCCCCCeEEeeecChhhee--eCccccccChhhhcceeeeec Confidence 332 6788888899999999999998876542 478888777 798864 5543211 111 222222 Q ss_pred eecc------------------------------ceeEEEEecceEEEEEEe--cceeeeccc----------------- Q lcl|Aclame:pro 199 KLEN------------------------------ETKVEYWDKVTVNYYVYE--NGSLIPDYS----------------- 229 (492) Q Consensus 199 ~~~~------------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------------- 229 (492) ...+ ....++|....+...... .+....... T Consensus 224 ~~~~~~~~~yp~~a~~~~~~~~~~~~~~~~~~~~vrv~E~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 303 (711) T protein:vir:10 224 MSKEKFKALYPDATAEPVYEDSVADYDTWFTEKSVRVSEYFTREPVIREIALLSDGRSFWLDALEDIVDELLEAGISIVR 303 (711) T ss_pred CCHHHHHHhCCchhhhhhhcccccccCcccCcceeeEEEEEeeeeeeeEEEeecCCceeccCcchhHHHHHHhcCchhhh Confidence 1100 011233332222211110 000000000 Q ss_pred -------------cccccccccceeccCCccceEeecCc-------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 230 -------------NNLENSKTHFSTGSWGKIPFIPFKNN-------DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNEL 289 (492) Q Consensus 230 -------------~~~~~~~~~~~~~~~g~iPvv~~~nn-------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~ 289 (492) ..+........+.+.+.+|+|+|.-. ..+.|.+..+++.++.+|...|.+...+...+.+ T Consensus 304 ~~~~~~~~v~~~~~~G~~~L~~~~p~~~~~~P~vp~~g~r~~~d~~~~~~G~vr~~~d~Qr~~N~~~s~~~~~l~~~~~~ 383 (711) T protein:vir:10 304 TRKVKTFKTYWRKITGANVLEGPVEIPSTTIPVIPVWGKSLIIKKKEIFRSIIRHSKDAQRMANYWDSAATETVALAPKA 383 (711) T ss_pred hhhhceeeEEEEEEecceeecCCCCCCCCcccEEEEeeeeeccccccccchhhhhhhhhHHHHHHHHHHHHHHHHhcCCC Confidence 00000111222344577899887421 2346788999999999999999999999988886 Q ss_pred eEEE-ecCCcccchhhHHh-hhhccceecCCCC----cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccch Q lcl|Aclame:pro 290 TYVL-KNYDDQELPEFKRL-LRYYGAIKVSDNG----GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAP 363 (492) Q Consensus 290 ~l~~-~g~~~~~~~~~~~~-~~~~~~~~~~~~~----d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~ 363 (492) .+++ .|.-....+.+... .+.+.++.+..+. .++++..+.-..++...++.....|-..|++.+.+.+..+++. T Consensus 384 ~~~~~~gai~~~~~~~~e~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~i~~~tGi~~~~~G~~~n~~ 463 (711) T protein:vir:10 384 PFIGSEGNVEGREDEWEQANTKNFSLLTYIPQYQGDPGPRRQPPAAVPAAELTLGQNSVEKIKSTMGMYDASLGAMGNET 463 (711) T ss_pred ceeecCcccCChHHHHHhccccCCCeeEecccccCcCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCChHHcCCCccch Confidence 6665 45433222223332 3345556555443 3455544444577888899999999999998888888778889 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CC-----cc--------------------- Q lcl|Aclame:pro 364 SGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI----------KG-----EH--------------------- 407 (492) Q Consensus 364 Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~----------~~-----~~--------------------- 407 (492) ||+|+......-..........+..+.+++.++++.++.. .+ ++ T Consensus 464 Sg~ai~~~q~qg~~~l~~~~dn~~~~~~~~g~~ll~li~~~~~~er~~rI~ged~~~~~v~ln~~~~~~~~G~~~~~nDi 543 (711) T protein:vir:10 464 SGRAIIARQRQGDRGSFAFIDNLTKSIRRVGKILVEMIPHIYDTERVVRLKFPDETEDFVKLNEQIFDEESGEWVTIHDL 543 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCcceEEecccccccccccceeeecc Confidence 9999998877777777777777777777777666655321 01 00 Q ss_pred ----eeeeEEeCCCCCcCHHHHHHHHHHHhccCCh------HHHHHhCCCCCCHHHHHHHHH------------------ Q lcl|Aclame:pro 408 ----KDVDISFNYNKVANTELQVQTAQQSMGIVSH------ETVLENHPFVEDLQAELERIE------------------ 459 (492) Q Consensus 408 ----~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~------et~l~~l~~v~D~~~E~~ri~------------------ 459 (492) .++.+.=.+..+.-..+.+..++.+.+.+|. ..+++.+++ .+.++-.++++ T Consensus 544 ~~g~~Dv~i~~~p~~~s~r~~~~~~l~ql~~~~p~~~~~~~~~il~~~d~-p~~~el~e~lr~~~~~~~~~~~~~~~~qq 622 (711) T protein:vir:10 544 NVQKYDVVVTTGPAFATQRIEAAEAMIQFAQAVPSAAAVMADLIAQNMDW-PGADVIAERLKKIVPPNVLSKDEREAIEE 622 (711) T ss_pred ceeeeEEEEeeccCchhHHHHHHHHHHHHHhhcchhhhHHHHHHHHhcCC-CCHHHHHHHHHhhcCcccCcchhhhHHHH Confidence 0112222334444344444555555444432 123333332 22222222221 Q ss_pred --HHHHHHHHhh----ccccCC--CCCCCCcCCCCCCC--CCC Q lcl|Aclame:pro 460 --QEQTEYNKQL----PNLDDG--GADSAQQQERSNNK--ESE 492 (492) Q Consensus 460 --~E~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~--~~e 492 (492) .|++...... ...... ..+......+.+.. ..| T Consensus 623 ~~~e~qq~~~~~q~~~~~~q~~~~qa~ae~~~Aqae~~qa~~e 665 (711) T protein:vir:10 623 DMPEQTEPTPEQQVEMAKSQADMAQAEADTAQAQADMLKAQLE 665 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1111000000 000000 00000000000000 000 No 83 >protein:vir:9950 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859080;genbank:gi:32170835;genbank:GeneID:2653184 Probab=99.76 E-value=1.1e-16 Score=108.07 Aligned_cols=440 Identities=15% Similarity=0.094 Sum_probs=223.5 Q ss_pred hcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRY-------IKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG 87 (492) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~ 87 (492) +++ +.- .+....+.+.+.++-.++ +..+.+-+....+..+||.|+| +...- ... T Consensus 1 ~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Q-w~~~~----~~~ 61 (714) T protein:vir:99 1 MKN----------ETN----TMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQ-LPPEV----LQV 61 (714) T ss_pred CCc----------ccc----cccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCC-CCHHH----HHH Confidence 111 111 112222233332322222 3333445566678899999975 21110 111 Q ss_pred cccccccccccccchHHHHHHHHHHhhhcCCeeec--CC--ch---hHHHHH----HHHHh-ccHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 88 AVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--HT--DD---EVVKRI----DEVLG-NRFDDKLHSVLTGASNKG 155 (492) Q Consensus 88 ~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~--d~---~~~~~l----~~~~~-n~~~~~~~~~~~~~~~~G 155 (492) .....+| .+.+|..+.+|+..+|+--.+.+.+. +. ++ +..+.+ ..+.+ ++++.....+..+++++| T Consensus 62 l~~~g~p--~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G 139 (714) T protein:vir:99 62 LKDRGQP--MTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAG 139 (714) T ss_pred HHhcCCC--cEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcC Confidence 1112233 46789999999999999987775553 32 22 233333 33343 578888999999999999 Q ss_pred eEEEEEEeCCC---CceEEEEEcccceEEEecCCCC----Cce-EEEEEeeeeccc------------------------ Q lcl|Aclame:pro 156 IEWLHPYLDEE---GEFKLFRVPAEQGIPIWTDKEH----EEL-EAFIRMYKLENE------------------------ 203 (492) Q Consensus 156 ~~~~~v~~d~~---g~~~i~~~~p~~~~~i~d~~~~----~~~-~~~i~~~~~~~~------------------------ 203 (492) .||+-++.+.+ +.++|..++|.+++. |+... ... -.+++.|...+. T Consensus 140 ~G~~~~~~~~d~~~~~i~i~~v~p~~v~~--Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d 217 (714) T protein:vir:99 140 LSWVEVRRNSDPFGPEFKVSTVSRNEVFW--DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVD 217 (714) T ss_pred cceEEeccccCCCCCCeEEEecchhheee--ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccc Confidence 99999988753 568999999999764 43221 111 111222211000 Q ss_pred ------------------------------------eeEEEEecceEEEEEEe--cceeeeccccc-------------- Q lcl|Aclame:pro 204 ------------------------------------TKVEYWDKVTVNYYVYE--NGSLIPDYSNN-------------- 231 (492) Q Consensus 204 ------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------- 231 (492) ..+++|........... .+......... T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:99 218 TTVTEGQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred cccccccccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhh Confidence 00122221111111100 00000000000 Q ss_pred -------------cccccccce--eccCCccceEeecCcc---C--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 232 -------------LENSKTHFS--TGSWGKIPFIPFKNND---L--EISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 232 -------------~~~~~~~~~--~~~~g~iPvv~~~nn~---~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) .+....... +.+.+.+|+|++.-.. . ..|.+..+++.++.+|...|.....+ .+...+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~ 375 (714) T protein:vir:99 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVI 375 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCcee Confidence 000011111 2333567777764322 1 24788899999999999999988866 355555 Q ss_pred EEecCCcccchhhHHhh-hhccceecCCC---C-----cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccc Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLL-RYYGAIKVSDN---G-----GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA 362 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~-~~~~~~~~~~~---~-----d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~ 362 (492) +..|........+.... +.+.++.+..+ | .++......-..++...++...+.|-..+++.+.+.+..+++ T Consensus 376 ~~~~a~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na 455 (714) T protein:vir:99 376 MDEDATQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGA 455 (714) T ss_pred eecCcccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccc Confidence 65665433333333322 22334444322 1 123222222346677788888889999999888888777888 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC---------Cc-----c----------------- Q lcl|Aclame:pro 363 PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF----DIK---------GE-----H----------------- 407 (492) Q Consensus 363 ~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~----~~~---------~~-----~----------------- 407 (492) .||+|+.................+..+.+++.++++.++ ... +. . T Consensus 456 ~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~ 535 (714) T protein:vir:99 456 TSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDIS 535 (714) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccce Confidence 999999887666555555566666666666666555443 210 00 0 Q ss_pred ---eeeeEEeCCCCCcCHHHHHHHHHHHhccCCh-------HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCC Q lcl|Aclame:pro 408 ---KDVDISFNYNKVANTELQVQTAQQSMGIVSH-------ETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGA 477 (492) Q Consensus 408 ---~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~-------et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~ 477 (492) .+|.|.=.+..|....+.++.++.+.+.++. ..+++.+++ .+.++-+++|.+-. ... T Consensus 536 ~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~--------~~~---- 602 (714) T protein:vir:99 536 RLNTHIALAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAAL--------GTP---- 602 (714) T ss_pred eeeEEEEEeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHc--------CCC---- Confidence 0122222344444445566666666554443 344555543 55556666664421 000 Q ss_pred CCCCcCCCCCCCCCC Q lcl|Aclame:pro 478 DSAQQQERSNNKESE 492 (492) Q Consensus 478 ~~~~~~~~~~~~~~e 492 (492) +..++........+. T Consensus 603 ~~~~~~~~e~q~~~~ 617 (714) T protein:vir:99 603 KSPDEMTPEEQEVAA 617 (714) T ss_pred CCccccchhhHHHHH Confidence 000000000000000 No 84 >protein:vir:817 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050550;genbank:gi:9633447;genbank:GeneID:1262279 Probab=99.76 E-value=1.1e-16 Score=108.07 Aligned_cols=440 Identities=15% Similarity=0.094 Sum_probs=223.5 Q ss_pred hcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRY-------IKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG 87 (492) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~ 87 (492) +++ +.- .+....+.+.+.++-.++ +..+.+-+....+..+||.|+| +...- ... T Consensus 1 ~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Q-w~~~~----~~~ 61 (714) T protein:vir:81 1 MKN----------ETN----TMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQ-LPPEV----LQV 61 (714) T ss_pred CCc----------ccc----cccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCC-CCHHH----HHH Confidence 111 111 112222233332322222 3333445566678899999975 21110 111 Q ss_pred cccccccccccccchHHHHHHHHHHhhhcCCeeec--CC--ch---hHHHHH----HHHHh-ccHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 88 AVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--HT--DD---EVVKRI----DEVLG-NRFDDKLHSVLTGASNKG 155 (492) Q Consensus 88 ~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~--d~---~~~~~l----~~~~~-n~~~~~~~~~~~~~~~~G 155 (492) .....+| .+.+|..+.+|+..+|+--.+.+.+. +. ++ +..+.+ ..+.+ ++++.....+..+++++| T Consensus 62 l~~~g~p--~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G 139 (714) T protein:vir:81 62 LKDRGQP--MTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAG 139 (714) T ss_pred HHhcCCC--cEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcC Confidence 1112233 46789999999999999987775553 32 22 233333 33343 578888999999999999 Q ss_pred eEEEEEEeCCC---CceEEEEEcccceEEEecCCCC----Cce-EEEEEeeeeccc------------------------ Q lcl|Aclame:pro 156 IEWLHPYLDEE---GEFKLFRVPAEQGIPIWTDKEH----EEL-EAFIRMYKLENE------------------------ 203 (492) Q Consensus 156 ~~~~~v~~d~~---g~~~i~~~~p~~~~~i~d~~~~----~~~-~~~i~~~~~~~~------------------------ 203 (492) .||+-++.+.+ +.++|..++|.+++. |+... ... -.+++.|...+. T Consensus 140 ~G~~~~~~~~d~~~~~i~i~~v~p~~v~~--Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d 217 (714) T protein:vir:81 140 LSWVEVRRNSDPFGPEFKVSTVSRNEVFW--DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVD 217 (714) T ss_pred cceEEeccccCCCCCCeEEEecchhheee--ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccc Confidence 99999988753 568999999999764 43221 111 111222211000 Q ss_pred ------------------------------------eeEEEEecceEEEEEEe--cceeeeccccc-------------- Q lcl|Aclame:pro 204 ------------------------------------TKVEYWDKVTVNYYVYE--NGSLIPDYSNN-------------- 231 (492) Q Consensus 204 ------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------- 231 (492) ..+++|........... .+......... T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:81 218 TTVTEGQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred cccccccccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhh Confidence 00122221111111100 00000000000 Q ss_pred -------------cccccccce--eccCCccceEeecCcc---C--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 232 -------------LENSKTHFS--TGSWGKIPFIPFKNND---L--EISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 232 -------------~~~~~~~~~--~~~~g~iPvv~~~nn~---~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) .+....... +.+.+.+|+|++.-.. . ..|.+..+++.++.+|...|.....+ .+...+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~ 375 (714) T protein:vir:81 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVI 375 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCcee Confidence 000011111 2333567777764322 1 24788899999999999999988866 355555 Q ss_pred EEecCCcccchhhHHhh-hhccceecCCC---C-----cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccc Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLL-RYYGAIKVSDN---G-----GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA 362 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~-~~~~~~~~~~~---~-----d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~ 362 (492) +..|........+.... +.+.++.+..+ | .++......-..++...++...+.|-..+++.+.+.+..+++ T Consensus 376 ~~~~a~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na 455 (714) T protein:vir:81 376 MDEDATQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGA 455 (714) T ss_pred eecCcccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccc Confidence 65665433333333322 22334444322 1 123222222346677788888889999999888888777888 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC---------Cc-----c----------------- Q lcl|Aclame:pro 363 PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF----DIK---------GE-----H----------------- 407 (492) Q Consensus 363 ~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~----~~~---------~~-----~----------------- 407 (492) .||+|+.................+..+.+++.++++.++ ... +. . T Consensus 456 ~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~ 535 (714) T protein:vir:81 456 TSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDIS 535 (714) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccce Confidence 999999887666555555566666666666666555443 210 00 0 Q ss_pred ---eeeeEEeCCCCCcCHHHHHHHHHHHhccCCh-------HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCC Q lcl|Aclame:pro 408 ---KDVDISFNYNKVANTELQVQTAQQSMGIVSH-------ETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGA 477 (492) Q Consensus 408 ---~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~-------et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~ 477 (492) .+|.|.=.+..|....+.++.++.+.+.++. ..+++.+++ .+.++-+++|.+-. ... T Consensus 536 ~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~--------~~~---- 602 (714) T protein:vir:81 536 RLNTHIALAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAAL--------GTP---- 602 (714) T ss_pred eeeEEEEEeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHc--------CCC---- Confidence 0122222344444445566666666554443 344555543 55556666664421 000 Q ss_pred CCCCcCCCCCCCCCC Q lcl|Aclame:pro 478 DSAQQQERSNNKESE 492 (492) Q Consensus 478 ~~~~~~~~~~~~~~e 492 (492) +..++........+. T Consensus 603 ~~~~~~~~e~q~~~~ 617 (714) T protein:vir:81 603 KSPDEMTPEEQEVAA 617 (714) T ss_pred CCccccchhhHHHHH Confidence 000000000000000 No 85 >protein:vir:2764 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612881;genbank:gi:20065798;genbank:GeneID:935623 Probab=99.76 E-value=1.1e-16 Score=108.07 Aligned_cols=440 Identities=15% Similarity=0.094 Sum_probs=223.5 Q ss_pred hcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRY-------IKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG 87 (492) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~ 87 (492) +++ +.- .+....+.+.+.++-.++ +..+.+-+....+..+||.|+| +...- ... T Consensus 1 ~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Q-w~~~~----~~~ 61 (714) T protein:vir:27 1 MKN----------ETN----TMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQ-LPPEV----LQV 61 (714) T ss_pred CCc----------ccc----cccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCC-CCHHH----HHH Confidence 111 111 112222233332322222 3333445566678899999975 21110 111 Q ss_pred cccccccccccccchHHHHHHHHHHhhhcCCeeec--CC--ch---hHHHHH----HHHHh-ccHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 88 AVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--HT--DD---EVVKRI----DEVLG-NRFDDKLHSVLTGASNKG 155 (492) Q Consensus 88 ~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~--d~---~~~~~l----~~~~~-n~~~~~~~~~~~~~~~~G 155 (492) .....+| .+.+|..+.+|+..+|+--.+.+.+. +. ++ +..+.+ ..+.+ ++++.....+..+++++| T Consensus 62 l~~~g~p--~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G 139 (714) T protein:vir:27 62 LKDRGQP--MTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAG 139 (714) T ss_pred HHhcCCC--cEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcC Confidence 1112233 46789999999999999987775553 32 22 233333 33343 578888999999999999 Q ss_pred eEEEEEEeCCC---CceEEEEEcccceEEEecCCCC----Cce-EEEEEeeeeccc------------------------ Q lcl|Aclame:pro 156 IEWLHPYLDEE---GEFKLFRVPAEQGIPIWTDKEH----EEL-EAFIRMYKLENE------------------------ 203 (492) Q Consensus 156 ~~~~~v~~d~~---g~~~i~~~~p~~~~~i~d~~~~----~~~-~~~i~~~~~~~~------------------------ 203 (492) .||+-++.+.+ +.++|..++|.+++. |+... ... -.+++.|...+. T Consensus 140 ~G~~~~~~~~d~~~~~i~i~~v~p~~v~~--Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d 217 (714) T protein:vir:27 140 LSWVEVRRNSDPFGPEFKVSTVSRNEVFW--DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVD 217 (714) T ss_pred cceEEeccccCCCCCCeEEEecchhheee--ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccc Confidence 99999988753 568999999999764 43221 111 111222211000 Q ss_pred ------------------------------------eeEEEEecceEEEEEEe--cceeeeccccc-------------- Q lcl|Aclame:pro 204 ------------------------------------TKVEYWDKVTVNYYVYE--NGSLIPDYSNN-------------- 231 (492) Q Consensus 204 ------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------- 231 (492) ..+++|........... .+......... T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:27 218 TTVTEGQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred cccccccccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhh Confidence 00122221111111100 00000000000 Q ss_pred -------------cccccccce--eccCCccceEeecCcc---C--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 232 -------------LENSKTHFS--TGSWGKIPFIPFKNND---L--EISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 232 -------------~~~~~~~~~--~~~~g~iPvv~~~nn~---~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) .+....... +.+.+.+|+|++.-.. . ..|.+..+++.++.+|...|.....+ .+...+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~ 375 (714) T protein:vir:27 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVI 375 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCcee Confidence 000011111 2333567777764322 1 24788899999999999999988866 355555 Q ss_pred EEecCCcccchhhHHhh-hhccceecCCC---C-----cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccc Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLL-RYYGAIKVSDN---G-----GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA 362 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~-~~~~~~~~~~~---~-----d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~ 362 (492) +..|........+.... +.+.++.+..+ | .++......-..++...++...+.|-..+++.+.+.+..+++ T Consensus 376 ~~~~a~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na 455 (714) T protein:vir:27 376 MDEDATQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGA 455 (714) T ss_pred eecCcccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccc Confidence 65665433333333322 22334444322 1 123222222346677788888889999999888888777888 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC---------Cc-----c----------------- Q lcl|Aclame:pro 363 PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF----DIK---------GE-----H----------------- 407 (492) Q Consensus 363 ~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~----~~~---------~~-----~----------------- 407 (492) .||+|+.................+..+.+++.++++.++ ... +. . T Consensus 456 ~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~ 535 (714) T protein:vir:27 456 TSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDIS 535 (714) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccce Confidence 999999887666555555566666666666666555443 210 00 0 Q ss_pred ---eeeeEEeCCCCCcCHHHHHHHHHHHhccCCh-------HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCC Q lcl|Aclame:pro 408 ---KDVDISFNYNKVANTELQVQTAQQSMGIVSH-------ETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGA 477 (492) Q Consensus 408 ---~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~-------et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~ 477 (492) .+|.|.=.+..|....+.++.++.+.+.++. ..+++.+++ .+.++-+++|.+-. ... T Consensus 536 ~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~--------~~~---- 602 (714) T protein:vir:27 536 RLNTHIALAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAAL--------GTP---- 602 (714) T ss_pred eeeEEEEEeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHc--------CCC---- Confidence 0122222344444445566666666554443 344555543 55556666664421 000 Q ss_pred CCCCcCCCCCCCCCC Q lcl|Aclame:pro 478 DSAQQQERSNNKESE 492 (492) Q Consensus 478 ~~~~~~~~~~~~~~e 492 (492) +..++........+. T Consensus 603 ~~~~~~~~e~q~~~~ 617 (714) T protein:vir:27 603 KSPDEMTPEEQEVAA 617 (714) T ss_pred CCccccchhhHHHHH Confidence 000000000000000 No 86 >protein:vir:10117 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859247;genbank:gi:32171003;genbank:GeneID:2653343 Probab=99.76 E-value=1.1e-16 Score=108.07 Aligned_cols=440 Identities=15% Similarity=0.094 Sum_probs=223.5 Q ss_pred hcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRY-------IKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG 87 (492) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~ 87 (492) +++ +.- .+....+.+.+.++-.++ +..+.+-+....+..+||.|+| +...- ... T Consensus 1 ~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Q-w~~~~----~~~ 61 (714) T protein:vir:10 1 MKN----------ETN----TMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQ-LPPEV----LQV 61 (714) T ss_pred CCc----------ccc----cccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCC-CCHHH----HHH Confidence 111 111 112222233332322222 3333445566678899999975 21110 111 Q ss_pred cccccccccccccchHHHHHHHHHHhhhcCCeeec--CC--ch---hHHHHH----HHHHh-ccHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 88 AVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--HT--DD---EVVKRI----DEVLG-NRFDDKLHSVLTGASNKG 155 (492) Q Consensus 88 ~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~--d~---~~~~~l----~~~~~-n~~~~~~~~~~~~~~~~G 155 (492) .....+| .+.+|..+.+|+..+|+--.+.+.+. +. ++ +..+.+ ..+.+ ++++.....+..+++++| T Consensus 62 l~~~g~p--~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G 139 (714) T protein:vir:10 62 LKDRGQP--MTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAG 139 (714) T ss_pred HHhcCCC--cEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcC Confidence 1112233 46789999999999999987775553 32 22 233333 33343 578888999999999999 Q ss_pred eEEEEEEeCCC---CceEEEEEcccceEEEecCCCC----Cce-EEEEEeeeeccc------------------------ Q lcl|Aclame:pro 156 IEWLHPYLDEE---GEFKLFRVPAEQGIPIWTDKEH----EEL-EAFIRMYKLENE------------------------ 203 (492) Q Consensus 156 ~~~~~v~~d~~---g~~~i~~~~p~~~~~i~d~~~~----~~~-~~~i~~~~~~~~------------------------ 203 (492) .||+-++.+.+ +.++|..++|.+++. |+... ... -.+++.|...+. T Consensus 140 ~G~~~~~~~~d~~~~~i~i~~v~p~~v~~--Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d 217 (714) T protein:vir:10 140 LSWVEVRRNSDPFGPEFKVSTVSRNEVFW--DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVD 217 (714) T ss_pred cceEEeccccCCCCCCeEEEecchhheee--ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccc Confidence 99999988753 568999999999764 43221 111 111222211000 Q ss_pred ------------------------------------eeEEEEecceEEEEEEe--cceeeeccccc-------------- Q lcl|Aclame:pro 204 ------------------------------------TKVEYWDKVTVNYYVYE--NGSLIPDYSNN-------------- 231 (492) Q Consensus 204 ------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------- 231 (492) ..+++|........... .+......... T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:10 218 TTVTEGQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred cccccccccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhh Confidence 00122221111111100 00000000000 Q ss_pred -------------cccccccce--eccCCccceEeecCcc---C--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 232 -------------LENSKTHFS--TGSWGKIPFIPFKNND---L--EISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 232 -------------~~~~~~~~~--~~~~g~iPvv~~~nn~---~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) .+....... +.+.+.+|+|++.-.. . ..|.+..+++.++.+|...|.....+ .+...+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~ 375 (714) T protein:vir:10 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVI 375 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCcee Confidence 000011111 2333567777764322 1 24788899999999999999988866 355555 Q ss_pred EEecCCcccchhhHHhh-hhccceecCCC---C-----cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccc Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLL-RYYGAIKVSDN---G-----GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA 362 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~-~~~~~~~~~~~---~-----d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~ 362 (492) +..|........+.... +.+.++.+..+ | .++......-..++...++...+.|-..+++.+.+.+..+++ T Consensus 376 ~~~~a~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na 455 (714) T protein:vir:10 376 MDEDATQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGA 455 (714) T ss_pred eecCcccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccc Confidence 65665433333333322 22334444322 1 123222222346677788888889999999888888777888 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC---------Cc-----c----------------- Q lcl|Aclame:pro 363 PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF----DIK---------GE-----H----------------- 407 (492) Q Consensus 363 ~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~----~~~---------~~-----~----------------- 407 (492) .||+|+.................+..+.+++.++++.++ ... +. . T Consensus 456 ~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~ 535 (714) T protein:vir:10 456 TSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDIS 535 (714) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccce Confidence 999999887666555555566666666666666555443 210 00 0 Q ss_pred ---eeeeEEeCCCCCcCHHHHHHHHHHHhccCCh-------HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCC Q lcl|Aclame:pro 408 ---KDVDISFNYNKVANTELQVQTAQQSMGIVSH-------ETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGA 477 (492) Q Consensus 408 ---~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~-------et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~ 477 (492) .+|.|.=.+..|....+.++.++.+.+.++. ..+++.+++ .+.++-+++|.+-. ... T Consensus 536 ~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~--------~~~---- 602 (714) T protein:vir:10 536 RLNTHIALAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAAL--------GTP---- 602 (714) T ss_pred eeeEEEEEeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHc--------CCC---- Confidence 0122222344444445566666666554443 344555543 55556666664421 000 Q ss_pred CCCCcCCCCCCCCCC Q lcl|Aclame:pro 478 DSAQQQERSNNKESE 492 (492) Q Consensus 478 ~~~~~~~~~~~~~~e 492 (492) +..++........+. T Consensus 603 ~~~~~~~~e~q~~~~ 617 (714) T protein:vir:10 603 KSPDEMTPEEQEVAA 617 (714) T ss_pred CCccccchhhHHHHH Confidence 000000000000000 No 87 >protein:vir:3296 Length: 714 # NCBI annotation: putative portal protein # Family: family:all:487 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049512;genbank:gi:9632518;genbank:GeneID:1262005 Probab=99.76 E-value=1.1e-16 Score=108.07 Aligned_cols=440 Identities=15% Similarity=0.094 Sum_probs=223.5 Q ss_pred hcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRY-------IKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG 87 (492) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~ 87 (492) +++ +.- .+....+.+.+.++-.++ +..+.+-+....+..+||.|+| +...- ... T Consensus 1 ~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Q-w~~~~----~~~ 61 (714) T protein:vir:32 1 MKN----------ETN----TMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQ-LPPEV----LQV 61 (714) T ss_pred CCc----------ccc----cccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCC-CCHHH----HHH Confidence 111 111 112222233332322222 3333445566678899999975 21110 111 Q ss_pred cccccccccccccchHHHHHHHHHHhhhcCCeeec--CC--ch---hHHHHH----HHHHh-ccHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 88 AVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--HT--DD---EVVKRI----DEVLG-NRFDDKLHSVLTGASNKG 155 (492) Q Consensus 88 ~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~--d~---~~~~~l----~~~~~-n~~~~~~~~~~~~~~~~G 155 (492) .....+| .+.+|..+.+|+..+|+--.+.+.+. +. ++ +..+.+ ..+.+ ++++.....+..+++++| T Consensus 62 l~~~g~p--~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G 139 (714) T protein:vir:32 62 LKDRGQP--MTIHNLIAPTVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAG 139 (714) T ss_pred HHhcCCC--cEEeccHHHHHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcC Confidence 1112233 46789999999999999987775553 32 22 233333 33343 578888999999999999 Q ss_pred eEEEEEEeCCC---CceEEEEEcccceEEEecCCCC----Cce-EEEEEeeeeccc------------------------ Q lcl|Aclame:pro 156 IEWLHPYLDEE---GEFKLFRVPAEQGIPIWTDKEH----EEL-EAFIRMYKLENE------------------------ 203 (492) Q Consensus 156 ~~~~~v~~d~~---g~~~i~~~~p~~~~~i~d~~~~----~~~-~~~i~~~~~~~~------------------------ 203 (492) .||+-++.+.+ +.++|..++|.+++. |+... ... -.+++.|...+. T Consensus 140 ~G~~~~~~~~d~~~~~i~i~~v~p~~v~~--Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d 217 (714) T protein:vir:32 140 LSWVEVRRNSDPFGPEFKVSTVSRNEVFW--DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVD 217 (714) T ss_pred cceEEeccccCCCCCCeEEEecchhheee--ccccccCChhhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhccccc Confidence 99999988753 568999999999764 43221 111 111222211000 Q ss_pred ------------------------------------eeEEEEecceEEEEEEe--cceeeeccccc-------------- Q lcl|Aclame:pro 204 ------------------------------------TKVEYWDKVTVNYYVYE--NGSLIPDYSNN-------------- 231 (492) Q Consensus 204 ------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------------- 231 (492) ..+++|........... .+......... T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~ 297 (714) T protein:vir:32 218 TTVTEGQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQV 297 (714) T ss_pred cccccccccccccchhhhccccccccccccccccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhh Confidence 00122221111111100 00000000000 Q ss_pred -------------cccccccce--eccCCccceEeecCcc---C--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 232 -------------LENSKTHFS--TGSWGKIPFIPFKNND---L--EISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 232 -------------~~~~~~~~~--~~~~g~iPvv~~~nn~---~--~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) .+....... +.+.+.+|+|++.-.. . ..|.+..+++.++.+|...|.....+ .+...+ T Consensus 298 ~~~~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~ 375 (714) T protein:vir:32 298 KVGRVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLL--QAKRVI 375 (714) T ss_pred hccccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhh--cCCcee Confidence 000011111 2333567777764322 1 24788899999999999999988866 355555 Q ss_pred EEecCCcccchhhHHhh-hhccceecCCC---C-----cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccc Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLL-RYYGAIKVSDN---G-----GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA 362 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~-~~~~~~~~~~~---~-----d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~ 362 (492) +..|........+.... +.+.++.+..+ | .++......-..++...++...+.|-..+++.+.+.+..+++ T Consensus 376 ~~~~a~~~~d~~~~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na 455 (714) T protein:vir:32 376 MDEDATQLSDNDLMEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGA 455 (714) T ss_pred eecCcccccHHHHHHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCCccc Confidence 65665433333333322 22334444322 1 123222222346677788888889999999888888777888 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccC---------Cc-----c----------------- Q lcl|Aclame:pro 363 PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF----DIK---------GE-----H----------------- 407 (492) Q Consensus 363 ~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~----~~~---------~~-----~----------------- 407 (492) .||+|+.................+..+.+++.++++.++ ... +. . T Consensus 456 ~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~ 535 (714) T protein:vir:32 456 TSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDIS 535 (714) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccce Confidence 999999887666555555566666666666666555443 210 00 0 Q ss_pred ---eeeeEEeCCCCCcCHHHHHHHHHHHhccCCh-------HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCC Q lcl|Aclame:pro 408 ---KDVDISFNYNKVANTELQVQTAQQSMGIVSH-------ETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGA 477 (492) Q Consensus 408 ---~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~-------et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~ 477 (492) .+|.|.=.+..|....+.++.++.+.+.++. ..+++.+++ .+.++-+++|.+-. ... T Consensus 536 ~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~~~p~~~~~~~~~~l~~~d~-p~~~el~~~ir~~~--------~~~---- 602 (714) T protein:vir:32 536 RLNTHIALAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAAL--------GTP---- 602 (714) T ss_pred eeeEEEEEeeccCchHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-CCHHHHHHHHHHHc--------CCC---- Confidence 0122222344444445566666666554443 344555543 55556666664421 000 Q ss_pred CCCCcCCCCCCCCCC Q lcl|Aclame:pro 478 DSAQQQERSNNKESE 492 (492) Q Consensus 478 ~~~~~~~~~~~~~~e 492 (492) +..++........+. T Consensus 603 ~~~~~~~~e~q~~~~ 617 (714) T protein:vir:32 603 KSPDEMTPEEQEVAA 617 (714) T ss_pred CCccccchhhHHHHH Confidence 000000000000000 No 88 >protein:vir:8846 Length: 705 # NCBI annotation: putative portal protein # Family: family:all:1548 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775254;genbank:gi:27476052;genbank:GeneID:2700600 Probab=99.72 E-value=2.4e-16 Score=106.25 Aligned_cols=439 Identities=14% Similarity=0.097 Sum_probs=201.9 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHH----HHHHHHH-HHHHHHHHhcCCCcccccccccccccccccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIK----QHLEKLP-EISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRM 98 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~----~~~~~~~-~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri 98 (492) ++. ..-...-+.+.+..+|...++ .+..++. ...+..+||.|+..-.. ... ..++ T Consensus 1 ~~k-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~y~g~~~~~~-----------~~~--~s~~ 60 (705) T protein:vir:88 1 MAK-------RRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNE-----------RPG--KSGI 60 (705) T ss_pred CCc-------ccccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCcc-----------cCC--CCcc Confidence 111 000011112222333444443 3332332 44567799999742110 111 2456 Q ss_pred ccchHHHHHHHHHHhhh----cC--CeeecC---CchhHHHHHHHH-----H-hccHHHHHHHHHHHHHhcCeEEEEEEe Q lcl|Aclame:pro 99 ITNFHANLVDQKVSYIV----GK--PIAFKH---TDDEVVKRIDEV-----L-GNRFDDKLHSVLTGASNKGIEWLHPYL 163 (492) Q Consensus 99 ~~n~~~~ivd~~~~~l~----g~--~~~~~~---~d~~~~~~l~~~-----~-~n~~~~~~~~~~~~~~~~G~~~~~v~~ 163 (492) +.+.....|+.....|. +. .+.+.+ +|....+.++.+ . .|+....+..++++++++|.|++.||+ T Consensus 61 ~~~~v~~~v~~~~~~l~~~~~~~~~~~~~~p~~~~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~dal~~g~gi~kv~w 140 (705) T protein:vir:88 61 VSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYV 140 (705) T ss_pred ccHHHHHHHHHHHHHHHHhhcCCCceEEEeeCChhHHHHHHHHHHHHhHHHhhccchhHHHHHHHHHHhhcCCeEEEecc Confidence 77777778888877664 32 345543 333333333322 2 245556778899999999999998877 Q ss_pred CCC------------------------------------------------CceEEEEEcccceEEEecCCCCCceEEE- Q lcl|Aclame:pro 164 DEE------------------------------------------------GEFKLFRVPAEQGIPIWTDKEHEELEAF- 194 (492) Q Consensus 164 d~~------------------------------------------------g~~~i~~~~p~~~~~i~d~~~~~~~~~~- 194 (492) +.. |++++..|+|.++++-.+........+. T Consensus 141 e~~~~~~~e~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~V~p~d~~~dp~a~~~~d~~~~~ 220 (705) T protein:vir:88 141 EEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLC 220 (705) T ss_pred ccccchhhhhhccCChhhhhhhhhhhhhhcccccccccceeeeEEeeeeecCceeeeeccHHHceecCCCCCcccCcEEE Confidence 331 5678889999988754332211121111 Q ss_pred EEeeeec-cc-------------ee--------------------------EEEEecc---eEEEEEEecceeeeccccc Q lcl|Aclame:pro 195 IRMYKLE-NE-------------TK--------------------------VEYWDKV---TVNYYVYENGSLIPDYSNN 231 (492) Q Consensus 195 i~~~~~~-~~-------------~~--------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~ 231 (492) .+++... +. .. ...++.. .|..| ++... .+.... T Consensus 221 ~~~~~t~~dl~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~~~~~~~~~~~~~~~~r~v~~~--E~y~~-~d~~~d 297 (705) T protein:vir:88 221 HREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWAS--ECYTL-LDVDGD 297 (705) T ss_pred EEEeccHHHHHhhcCChhHhhhhhcccccchhhhhhhccccccccccccccccccccCCceeEEEE--EeeeE-ecccCC Confidence 1211110 00 00 0000000 01111 11000 000000 Q ss_pred cc--c------ccccceeccCCccceEee-----cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCc Q lcl|Aclame:pro 232 LE--N------SKTHFSTGSWGKIPFIPF-----KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDD 298 (492) Q Consensus 232 ~~--~------~~~~~~~~~~g~iPvv~~-----~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~ 298 (492) .. + .......-++|.+||+.+ +.+.+|.|.++.+.++++.+|...+.+.+.+...+.|.+.+..... T Consensus 298 ~~~~~~~~~~~g~~il~~~~~~~~PF~~~~~~p~~~~~~G~g~~~~~~d~Q~~~n~~~~~~~d~~~~~~~~~~~~~~g~v 377 (705) T protein:vir:88 298 GISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQV 377 (705) T ss_pred cceeeEEEEEeCccccccccCCCCCEEEecceeecCccccCChHHHHhHHHHHHHHHHHHHHHHHHhccCCceecccccc Confidence 00 0 000001125667777654 4455789999999999999999999999999998888776532111 Q ss_pred ccchhhHHhhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc----ccccchhHHHHHHHHHH Q lcl|Aclame:pro 299 QELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD----KFGSAPSGVALEFLYTN 374 (492) Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~----~~~~~~Sg~Al~~~~~~ 374 (492) ...+.. ..+.+.++.+...+.+.++..+.-.......++.+...+...+++++.+.+ ..+++.++.|+..+... T Consensus 378 -~~~d~~-~~~pg~vv~~~~~~~i~~~~~~~~~~~~~~ll~~~~~~~~~~tGi~~~~~G~~~~~~~~~~Ta~~i~~~~~~ 455 (705) T protein:vir:88 378 -NLEDLL-TNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTA 455 (705) T ss_pred -Cccccc-ccCCCeeEEecCCCccccccCCcCcHHHHHHHHHHHHHHHHhhCCchHHcCCCcccccchhhHHHHHHHHHH Confidence 111111 123445666666666777755555566777889999999999999988765 22345677777777777 Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCc----------ce-----------eeeEEeCCCCCcCHHHHHHHHHHH Q lcl|Aclame:pro 375 LNLKADKLARKAK-VAIQELLWFVFEHFDIKGE----------HK-----------DVDISFNYNKVANTELQVQTAQQS 432 (492) Q Consensus 375 l~~k~~~~~~~~~-~~l~~~~~li~~~~~~~~~----------~~-----------~i~i~f~~~~p~d~~e~~~~~~k~ 432 (492) .........+.|. .++++++++++.++....+ +. ++.+.-.. ...+..+....+..+ T Consensus 456 ~~~r~~~~~r~~a~~~~~~l~~~~~~li~~~~~~~~~~ri~g~~v~v~~~~~~~~~~v~v~v~~-~~~~~eq~~a~l~~l 534 (705) T protein:vir:88 456 AEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGI-GNMNKDQQMLHLMRI 534 (705) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeccchhccchHhhccCCceEEeecc-ccchHHHHHHHHHHH Confidence 7777777777775 3555555555544322111 11 11121111 111222222122111 Q ss_pred hc-------------cCChHHHH-------HhCCCCCCHHH------HHH----HHHHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 433 MG-------------IVSHETVL-------ENHPFVEDLQA------ELE----RIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 433 ~g-------------~vs~et~l-------~~l~~v~D~~~------E~~----ri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) .. +++..... +..+ +.++++ .++ +...++.+........ ....+.+ T Consensus 535 l~~~q~l~~~~~~~~~~~~~~~~~~~~el~e~~~-~k~~~~~~~~~~~~e~~~~~~~~~q~e~~~~~~~~---~~q~e~~ 610 (705) T protein:vir:88 535 WEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAG-YKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDI---KAQADAQ 610 (705) T ss_pred HHHHHHhhcccchhhhcChHHHHHHHHHHHHhhh-hhhHHHHhhhhhhHHHHHHHHhhhhhhhhHHHHHH---HHHHHHH Confidence 11 11111110 0000 000000 000 0000000000000000 0000000 Q ss_pred CCCCCCCC---------CC Q lcl|Aclame:pro 483 QERSNNKE---------SE 492 (492) Q Consensus 483 ~~~~~~~~---------~e 492 (492) ..+.+.+. .| T Consensus 611 k~q~e~~~~q~e~q~~q~E 629 (705) T protein:vir:88 611 RAQSDALAKQAEAQMKQVE 629 (705) T ss_pred HHHHHHHHHHHHHHHHHHH Confidence 00000000 00 No 89 >protein:vir:105619 Length: 772 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164304;genbank:gi:56692922;genbank:GeneID:3197230 Probab=99.72 E-value=9.3e-17 Score=108.48 Aligned_cols=457 Identities=13% Similarity=0.101 Sum_probs=218.0 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) ||.-.-+.|-++..-...+.+. ....+. .+...+..+.+-+....+..+||.|+| +...- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~-~~~~~~~~q~~~r~~a~~d~~fy~G~Q-W~~~~ 60 (772) T protein:vir:10 1 MQITENDRQYLNGLPPAGDTPL------------------TVDEYA-DINYEIEDQPAWRAVADKEMDYADGNQ-LDTEL 60 (772) T ss_pred CCcchhhHHhhccCCccccccc------------------CHHHHH-HHHHHHhccHHHHHHHHHHHHhhcCCC-CCHHH Confidence 3332222222211111111110 011111 222334444556667778899999985 21111 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec--CC----chhHHHHHH----HHHh-ccHHHHHHHHHH Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--HT----DDEVVKRID----EVLG-NRFDDKLHSVLT 149 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~----d~~~~~~l~----~~~~-n~~~~~~~~~~~ 149 (492) . .......++ .+.+|..+.+|+..+|+-..+.+.+. +. +.+..+.++ .+.+ ++++.....+.. T Consensus 61 ~----~~l~~~g~p--~~~~N~i~~~v~~v~g~~~~nr~d~~v~Pr~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~ 134 (772) T protein:vir:10 61 L----RRQQALGIP--PAVEDLIGPALLSLQGYEAVTRTDWRVTPNGDVGGQEVADALNYRLNTAERQSGADRACSEAFR 134 (772) T ss_pred H----HHHHhcCCC--cEEEcchHHHHHHHHHHHHhcCcceEEecCCCchHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 0 111122233 46789999999999999987775553 32 223333333 3333 678888999999 Q ss_pred HHHhcCeEEEEEEeCCC---CceEEEEEcccceEEEecCCCCCce---EEE-EEeeee---------------------- Q lcl|Aclame:pro 150 GASNKGIEWLHPYLDEE---GEFKLFRVPAEQGIPIWTDKEHEEL---EAF-IRMYKL---------------------- 200 (492) Q Consensus 150 ~~~~~G~~~~~v~~d~~---g~~~i~~~~p~~~~~i~d~~~~~~~---~~~-i~~~~~---------------------- 200 (492) +++++|.||+-++.+++ +.++|..++|.+++ ||+.....+ .+. +..|.. T Consensus 135 ~~i~~G~Gw~e~~~~~d~~~~~i~i~~v~p~~v~--~Dp~a~~D~sDar~~~~~~~~~~d~~~~~fp~~a~~~~~~~~~~ 212 (772) T protein:vir:10 135 PQIACGIGWVEVSRESDPFKFPYRCRPIRRDEIH--WDMKCGDDWEACRFLRRQRWLSPDRIALVFPEHAELIGMVGKYG 212 (772) T ss_pred HhhhcCceeEEeccccCCCCCCeEEEeeCcccce--ecCCCCCCHHHhhhhhhhccCCHHHHHHhCCCchhHHHhhhhhc Confidence 99999999999988764 45789999999865 555332221 111 110000 Q ss_pred ---------------------------------------ccce---eEEEEecceEEEEEEe--cceeeec--------- Q lcl|Aclame:pro 201 ---------------------------------------ENET---KVEYWDKVTVNYYVYE--NGSLIPD--------- 227 (492) Q Consensus 201 ---------------------------------------~~~~---~~~~~~~~~~~~~~~~--~~~~~~~--------- 227 (492) .+.. .+++|....+.+.... .+..... T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVrv~E~w~r~~~~~~~~~~~~g~~~~~~~~~~~~~~ 292 (772) T protein:vir:10 213 STWWGQPDLGMMEGGTSTGLHNAWNEARAWTVQEDHWYNPTSKEICLVELWYRRWVQVHVLKSPDGRVVEYDPNNLAHNI 292 (772) T ss_pred ccccCcccccccccccccccccccchhhccccccccccccCCceEEEEEEeeeeeeeeeeeccCCCceEeeCcccHHHHH Confidence 0000 1222322221111110 0000000 Q ss_pred ------------------ccccccccccc--ceeccCCccceEeecCcc-----CCCCcHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 228 ------------------YSNNLENSKTH--FSTGSWGKIPFIPFKNND-----LEISDIFMYKTLIDAYNRRLSDLSNT 282 (492) Q Consensus 228 ------------------~~~~~~~~~~~--~~~~~~g~iPvv~~~nn~-----~~~s~~~~v~~liD~~~~~~s~~~~~ 282 (492) +..-.+..... ..+.+.+.+|+|++.-.. ...|.+..+++.++.+|...|.+... T Consensus 293 ~l~~g~~~~~~~~~~rv~~~~~~g~~~L~~~~~p~~~~~fP~vP~~g~r~~~~g~~~G~vr~~kd~Qr~~N~~~S~~~~~ 372 (772) T protein:vir:10 293 ALASGRISPKKVTVSRVRRSYWLGPHCLHDGPTPYTHRHFPYVPFFGFREDATGIPYGYVRGMKYAQDSLNSGVSKLRWG 372 (772) T ss_pred HHhhcccchheeeeeEEEEEEEecceeeccCCCCCCCCccceEEEeeeEeccCCcccchhhhhhhHHHHHHHHHHHHHHH Confidence 00000111111 122344568888765321 23478889999999999999999887 Q ss_pred HHhcCCceEEEecCCcccchhhHHhhhh-ccceecCCC------CcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCC Q lcl|Aclame:pro 283 FKDSNELTYVLKNYDDQELPEFKRLLRY-YGAIKVSDN------GGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFS 355 (492) Q Consensus 283 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~~------~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~ 355 (492) +...+ ...-.|.-.....++...... +.++.+..+ ..++......-..++...++.....|-..+++.+.+ T Consensus 373 l~~~~--~~~~~gav~~~d~~~~e~~arp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGv~~~~ 450 (772) T protein:vir:10 373 MSVAR--VERTKGAVAMTDAQFRRQIARPDADIVLDENHMAKPGARFDVKRDYTLTDQHFQMLQDNRATIERVSNITAGF 450 (772) T ss_pred Hhccc--ccccCCCccchhHHHHHhccCCCCeEEeCCccccCCCCCccccCCccccHHHHHHHHHHHHHHHHHhCCCHHH Confidence 76554 222234322222234333332 344444433 122232222233667778888888899999888877 Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C-------Ccc----------------- Q lcl|Aclame:pro 356 SDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI----K-------GEH----------------- 407 (492) Q Consensus 356 ~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~----~-------~~~----------------- 407 (492) .+..++..||+||...-..-..........+..+.+++.++++.++.. . .+. T Consensus 451 lG~~~na~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~y~~er~~RI~~~d~~~~~~~v~in~~~~d~~ 530 (772) T protein:vir:10 451 QGRKGTATSGIQEQQQIEQSNQSIGRIMDNFRAGRTLVGELLLAMIVEDIGQERTEVVIEGDAVTADRVVVLNEPQRDPQ 530 (772) T ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCCCCceEEeccceeccc Confidence 777778899999987766655555666666666666666666554321 0 010 Q ss_pred -------eee-----eEE--eCCCCCcCHHHHHHHHHHHhccCChHHHHHhCC------CCCCHHHHHHHHHHHH----- Q lcl|Aclame:pro 408 -------KDV-----DIS--FNYNKVANTELQVQTAQQSMGIVSHETVLENHP------FVEDLQAELERIEQEQ----- 462 (492) Q Consensus 408 -------~~i-----~i~--f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~------~v~D~~~E~~ri~~E~----- 462 (492) .+| +|. =.+..+.-..+.++.++.+.+.++.+.....++ .....++-+++|++-. T Consensus 531 tg~~~~~NDi~~g~yDv~i~~~p~~~t~r~~~~~~m~ql~~~~~P~~~~~~~~~~le~~D~p~~~ei~~~ir~~~~~~~p 610 (772) T protein:vir:10 531 TGAAYLSNDLLRTRIKVALEDVPSTNSYRGQQLNAMSEAVKSMPPQYQAAVLPFLVSLMDVPFKRDVVEAIRAVDQQQTP 610 (772) T ss_pred ccccceeccceeeeEEEEeeccccchHHHHHHHHHHHHHHhccChhHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCCh Confidence 011 111 111122112334444555545455443322211 1223333344443210 Q ss_pred -----------HHHHHhhcc-ccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 463 -----------TEYNKQLPN-LDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 463 -----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e 492 (492) +...+..+. +..-.... +....+++ T Consensus 611 eq~~~~~~q~~qq~~~~~~~el~~~q~~a-----~~~~~~A~ 647 (772) T protein:vir:10 611 EQIQQQIDQAVQDALAKAGNDIKLRELEI-----KERKADSE 647 (772) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH Confidence 000000000 00000000 00000000 No 90 >protein:vir:104437 Length: 714 # NCBI annotation: putative phage portal protein # Family: family:all:487 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794061;genbank:gi:116222006;genbank:GeneID:4397502 Probab=99.70 E-value=5.7e-16 Score=104.16 Aligned_cols=447 Identities=14% Similarity=0.074 Sum_probs=222.6 Q ss_pred hcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKP 94 (492) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~ 94 (492) |+..-...--.|++...- .-..+.+..++.. +..+..-+....+-.+||.|+| +...- ........+| T Consensus 1 ~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~-~~~~~~~r~~a~~d~~fy~G~Q-w~~~~----~~~l~~~g~p 68 (714) T protein:vir:10 1 MKNEINTTAMKNDHGSTP------RFSQRQLLSLCSD-IDSQPLWRDAANKACAYYDGDQ-LAPEV----IQVLKDRGQP 68 (714) T ss_pred CCcCcCcccCCCcchhhh------hhhHHHHHHHHHH-HhhhHHHHHHHHHHHHhhcCCC-CCHHH----HHHHHhcCCC Confidence 222111111111111100 0011112222222 3333444566778899999976 21111 1111122233 Q ss_pred ccccccchHHHHHHHHHHhhhcCCeeec--CC--ch---hHHHHHH----HHHh-ccHHHHHHHHHHHHHhcCeEEEEEE Q lcl|Aclame:pro 95 DDRMITNFHANLVDQKVSYIVGKPIAFK--HT--DD---EVVKRID----EVLG-NRFDDKLHSVLTGASNKGIEWLHPY 162 (492) Q Consensus 95 ~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~--d~---~~~~~l~----~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~ 162 (492) .+.+|..+.+|+..+|+--.+.+.+. +. ++ +..+.+. .+.+ ++.+.....+..+++++|.||+-++ T Consensus 69 --~~~~N~i~~~v~~v~g~~~~nr~~~~v~pr~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~ 146 (714) T protein:vir:10 69 --MTIHNLIAPTVDGVLGMEAKTRTDLIVMSDDPNDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVR 146 (714) T ss_pred --cEEeccHHHHHHHHHHHHHhCCcceEEecCCCChhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcccceEEee Confidence 46789999999999999987776553 32 22 2333333 3333 6788889999999999999999998 Q ss_pred eCCC---CceEEEEEcccceEEEecCCCCC----ceEEE-EEeeee---------------------------------- Q lcl|Aclame:pro 163 LDEE---GEFKLFRVPAEQGIPIWTDKEHE----ELEAF-IRMYKL---------------------------------- 200 (492) Q Consensus 163 ~d~~---g~~~i~~~~p~~~~~i~d~~~~~----~~~~~-i~~~~~---------------------------------- 200 (492) .+.+ +.+++..++|.+++. |+.... ...+. ++.|.. T Consensus 147 ~d~d~~~~~i~i~~v~p~~v~~--Dp~a~~~D~sDar~~~~~~~~~~~~~~~~fp~~a~~i~~~~~~~~~~~~~~~~~~~ 224 (714) T protein:vir:10 147 RNSEPFGPEFKVSTVSRNEVFW--DWLSREADLSDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQ 224 (714) T ss_pred eccCCCCCCeEEEecChhheee--ccccccCChhhhhhhhhhccCCHHHHHHhcCCchhhhhccchhhcCcccchhhhhh Confidence 8754 679999999998764 432110 11111 110000 Q ss_pred -----------------------ccc---eeEEEEecceEEEEEEe--cceeeeccccc--------------------- Q lcl|Aclame:pro 201 -----------------------ENE---TKVEYWDKVTVNYYVYE--NGSLIPDYSNN--------------------- 231 (492) Q Consensus 201 -----------------------~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------------------- 231 (492) .+. ..+++|........... ++......... T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rV~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~r 304 (714) T protein:vir:10 225 PSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSR 304 (714) T ss_pred cccccccchhhcccccccccccccCcceEEEEEEEEeEEEEEEeecCCCCCeeeeCccCHHHHHHHHhccceecccceee Confidence 000 01233333222221111 11111000000 Q ss_pred ------cccccccce--eccCCccceEeecCcc-----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCc Q lcl|Aclame:pro 232 ------LENSKTHFS--TGSWGKIPFIPFKNND-----LEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDD 298 (492) Q Consensus 232 ------~~~~~~~~~--~~~~g~iPvv~~~nn~-----~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~ 298 (492) .+....... +-+.+.+|+|++.-.. ...|.+..+++.++.+|...|.....+. +...++..|... T Consensus 305 v~~~~~~g~~~L~~~~~p~p~~~fp~vP~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l~--~~~~~~~~gav~ 382 (714) T protein:vir:10 305 IREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLLQ--AKRVIMDEDATQ 382 (714) T ss_pred EEEEEEecchhhhcCCCCCCCCceeeEEecceeeeccCccceehhhhhhHHHHHHHHHHHHHHHHh--CCceeecccccc Confidence 000011112 3344567787765432 2347888999999999999999888763 444555566544 Q ss_pred ccchhhHHhh-hhccceecCCC--------CcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHH Q lcl|Aclame:pro 299 QELPEFKRLL-RYYGAIKVSDN--------GGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALE 369 (492) Q Consensus 299 ~~~~~~~~~~-~~~~~~~~~~~--------~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~ 369 (492) .....+.... +.+.++.+..+ +.++......-..++...++.....|-..+++.+.+.+..+++.||+|+. T Consensus 383 ~~d~~~~e~~~rp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~~na~SGvAI~ 462 (714) T protein:vir:10 383 LSDNDLMEQLERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQDSGATSGVAIS 462 (714) T ss_pred ccHHHHHHhccCCCCeEEecccccccCCccccccccCCCCCcHHHHHHHHHHHHHHHHhhCCCHHHcCCCcchhHHHHHH Confidence 3333343332 22344444321 11232222223456778888888999999998888888778889999998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C---------Cc-----c--------------------eeee Q lcl|Aclame:pro 370 FLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI----K---------GE-----H--------------------KDVD 411 (492) Q Consensus 370 ~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~----~---------~~-----~--------------------~~i~ 411 (492) .....-..........+..+.+++.++++.++.. . +. . .+|. T Consensus 463 ~r~~qg~~~l~~~~dnl~~~~~~~g~~ll~li~~~~~~~rv~RI~~e~~~~~~~~~~~~n~~~~~~~~~nDi~~~~~dv~ 542 (714) T protein:vir:10 463 NLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIA 542 (714) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcccceeEeeccccCCccccccceeeeEEEE Confidence 8776666666666666667777766666654311 1 00 0 0111 Q ss_pred EEeCCCCCcCHHHHHHHHHHHhccCCh-------HHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCC Q lcl|Aclame:pro 412 ISFNYNKVANTELQVQTAQQSMGIVSH-------ETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQE 484 (492) Q Consensus 412 i~f~~~~p~d~~e~~~~~~k~~g~vs~-------et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 484 (492) +.=.+..|.-..+.++.++.+.+.++. ..+++.+.+ .+.++-+++|.+-. ... +..++.. T Consensus 543 i~~~p~~~s~r~~~~~~l~ql~~~~~p~~~~~~~~~~le~~d~-p~~~ei~~~ir~~~--------~~~----~~~~~~~ 609 (714) T protein:vir:10 543 LAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLLDV-PQKQEFVERIRAAL--------GTP----KSPDEMT 609 (714) T ss_pred EeeccCcHHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhcCC-cCHHHHHHHHHHHc--------CCC----CCccccC Confidence 111223333344445555555443332 334454443 44555555554321 000 0000000 Q ss_pred CCCCC---CCC Q lcl|Aclame:pro 485 RSNNK---ESE 492 (492) Q Consensus 485 ~~~~~---~~e 492 (492) ..... ..+ T Consensus 610 ~e~q~~q~~~~ 620 (714) T protein:vir:10 610 PEEQEVAAQQQ 620 (714) T ss_pred cchhHHHHHHH Confidence 00000 000 No 91 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=99.66 E-value=1.1e-14 Score=97.05 Aligned_cols=450 Identities=11% Similarity=0.062 Sum_probs=208.7 Q ss_pred ccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH----H----------HHHHHHhcCCCccccccccccccc Q lcl|Aclame:pro 22 YPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPE----I----------SIGQEYYEQRPDIVKEPKPVDATG 87 (492) Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~----~----------~~~~~YY~G~~~i~~~~~~~~~~~ 87 (492) -++..|-.+ ...-.-.+.+.+..+|.+.++++...+.. - .++.+||.|...- .. .. T Consensus 1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~~~~~y~~~~~~~-----~~--~~ 70 (651) T protein:vir:80 1 MKLATTTTD---KNRQTYDETHDVSSYVKKEYKRFCDARQVCEETWLEAWGMYLSTPEAQDYLRDQVLR-----SV--GD 70 (651) T ss_pred Ccccccccc---hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcccHHHHHhhcccccc-----cc--CC Confidence 222222111 11112234455566666666665543321 1 1345677664310 00 01 Q ss_pred cccccccccccccchHHHHHHHHHHhhhcC----C--eeecCC-chh----HHHHHHHHH-----hccHHHHHHHHHHHH Q lcl|Aclame:pro 88 AVDPLKPDDRMITNFHANLVDQKVSYIVGK----P--IAFKHT-DDE----VVKRIDEVL-----GNRFDDKLHSVLTGA 151 (492) Q Consensus 88 ~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~----~--~~~~~~-d~~----~~~~l~~~~-----~n~~~~~~~~~~~~~ 151 (492) ..... .++++.+.....|+..++.|+.. + +.+... +.+ ..+.++.++ .++|.....++..++ T Consensus 71 ~~~~~--rs~~~~~~v~~~ve~~~~~l~~~~~~~~~~~~~~p~~~~d~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ 148 (651) T protein:vir:80 71 VNADW--RHKITTGKAFEAIETIHAYLMSATFPNKNWFDVVPAKPGQDNLLVSRLIKRYVQDKLTEGKFRAAYANFLRQL 148 (651) T ss_pred CCCCC--CccccChhHHHHHHHHHHHHHHhhcCCCceeEeccCCchhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhh Confidence 11122 24688899999999888777542 2 222221 222 233344333 346788888899999 Q ss_pred HhcCeEEEEEEeCC-------------------------------CCceEEEEEcccceEEEecCCCCC--ceEEEEEee Q lcl|Aclame:pro 152 SNKGIEWLHPYLDE-------------------------------EGEFKLFRVPAEQGIPIWTDKEHE--ELEAFIRMY 198 (492) Q Consensus 152 ~~~G~~~~~v~~d~-------------------------------~g~~~i~~~~p~~~~~i~d~~~~~--~~~~~i~~~ 198 (492) +++|.|++.||++. .|.|++..++|.++++ |++..+ .-.++++.+ T Consensus 149 l~~G~~i~kv~we~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~~--dp~a~~~~d~~~v~~~~ 226 (651) T protein:vir:80 149 LITGNSVLALPWRVETAEVKKKVQVRTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDCFY--DPNVTDPNRGAFIRKLT 226 (651) T ss_pred cccCceEEEEeecceeeeeehheeccccccccccceeeeccceeeeceeEEEEecHHHeee--cCCCcCccccceeeeee Confidence 99999999887642 1567899999999875 443322 222222322 Q ss_pred ee-cc-------c----------------------------------------eeEEEEecceEEEEEEecceeeecccc Q lcl|Aclame:pro 199 KL-EN-------E----------------------------------------TKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) Q Consensus 199 ~~-~~-------~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (492) .. .+ + ..+++|+. +..+..++......... T Consensus 227 ~t~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~--~~~~d~e~~~~~~~~v~ 304 (651) T protein:vir:80 227 KTKADILNLLSEGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEY--WGDIHLENKTYHDVVVT 304 (651) T ss_pred eeHHHHHHHHhcccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEE--EEEeeccCCceEEEEEE Confidence 11 00 0 00111110 00011111111000000 Q ss_pred ccccccccceeccC-CccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhh Q lcl|Aclame:pro 231 NLENSKTHFSTGSW-GKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEF 304 (492) Q Consensus 231 ~~~~~~~~~~~~~~-g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~ 304 (492) ..+........+++ ..+|++.++ ...+|+|..+.+.+.+..+|.+...+.+.+.-.+.|.+.+......+..++ T Consensus 305 ~~g~~il~~~~~~~~~~~Pf~~~~~~~~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v~~d~~~~~~~l 384 (651) T protein:vir:80 305 IMGNEVLRFEQNPYWCGRPFVIGTYIPTARQPYAMGALQPNLGMLHELNIITNQRLDNLELAIDQMYTLRSDGLLQPEDV 384 (651) T ss_pred EcCcEEecccccCCCCCCCeeeecceecCccccCCChHHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCccccHHHh Confidence 00111111122332 345776554 345799999999999999999999999999999999988754333333333 Q ss_pred HHhhhhccceecCCCCcceeeecc-cCHHHHHHHHHHHHHHHHHHhCCCCCCccc---cccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 305 KRLLRYYGAIKVSDNGGVDTIQVE-VPVENSKKYLDELYQKIMLFGQAVDFSSDK---FGSAPSGVALEFLYTNLNLKAD 380 (492) Q Consensus 305 ~~~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~---~~~~~Sg~Al~~~~~~l~~k~~ 380 (492) . ...++++.++..+++.++.+. .+.......++.+...+...++++++..+. ..++.+|.++......+..... T Consensus 385 ~--~~pg~vi~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~~TAteI~~~~~~~~~~l~ 462 (651) T protein:vir:80 385 Y--TEPGKVFLVSDHGDLQPLANQSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSGERVTAAEVAAVREAGGNRLS 462 (651) T ss_pred h--cCCCceEEecCCCCceeeccCcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhhccHHHHHHHHHHHHHHHH Confidence 2 344566777777888887654 344566778999999999999888765432 2234456666666566666666 Q ss_pred HHHHHHHH-HHHHHHHHHHHHhccCCc----------c-----------eeeeEEeC--CCCCcCHHHHHHHHHHHh--- Q lcl|Aclame:pro 381 KLARKAKV-AIQELLWFVFEHFDIKGE----------H-----------KDVDISFN--YNKVANTELQVQTAQQSM--- 433 (492) Q Consensus 381 ~~~~~~~~-~l~~~~~li~~~~~~~~~----------~-----------~~i~i~f~--~~~p~d~~e~~~~~~k~~--- 433 (492) ..-+.|.. +++.+++.++.++....+ . .++.+.+. ..-+....+..+.+.++. T Consensus 463 ~v~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~ri~~~~~~~~~~~~i~~~dl~~~~~iv~~g~~~~~~r~~~~~~l~~~~ 542 (651) T protein:vir:80 463 GIHKHIEETSLLVLLEKVMHLVQQFTDQPGMVRVAGDEAGAYEYYELDVEDLQKEVRLVPIGSDHVIERKQYIEDRLTFI 542 (651) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccceeecccccccccccccCccceeeeeeeeeccHHHHHHHHHHHHHHHHHH Confidence 55566654 444444444443321110 0 12222221 111112222222222221 Q ss_pred ---ccCC---h-----HH---HHHhCCCCCCHHHHHHHH------HHHHHHHHHhhccccCCCCC---CCCcCCCCCC-- Q lcl|Aclame:pro 434 ---GIVS---H-----ET---VLENHPFVEDLQAELERI------EQEQTEYNKQLPNLDDGGAD---SAQQQERSNN-- 488 (492) Q Consensus 434 ---g~vs---~-----et---~l~~l~~v~D~~~E~~ri------~~E~~~~~~~~~~~~~~~~~---~~~~~~~~~~-- 488 (492) +..+ . +. +++.++ +.++..-+... ..+++. ..+..... .... ...+...... T Consensus 543 q~~~~~p~~~~~~~~~~~~~~l~~~~g-~~~~~~~l~~~~q~~~~~~~~~~-~~q~~~~~-~~a~~~~~~~~~~~~~~~~ 619 (651) T protein:vir:80 543 QAVAQVPEMGQLVDYKRILVDLLQHWG-FEEPEAYLKQQDQQAPANPQEAL-LSQAKDVG-GQAMSNMLQNQLQADGGTQ 619 (651) T ss_pred HhhccCCccchhhhHHHHHHHHHHHcC-CCCcHHhcCCCccchhhhhhHHH-HhhHHHHH-HHHHHHHHHHHHHHHHHHH Confidence 1111 0 11 122222 22221111000 000000 00000000 0000 0000000000 Q ss_pred CCCC Q lcl|Aclame:pro 489 KESE 492 (492) Q Consensus 489 ~~~e 492 (492) ...| T Consensus 620 ~~~~ 623 (651) T protein:vir:80 620 MMSE 623 (651) T ss_pred HHHH Confidence 0000 No 92 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.66 E-value=4.6e-16 Score=104.69 Aligned_cols=411 Identities=11% Similarity=0.076 Sum_probs=203.2 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Ccccccccccccc-ccccccccccccccchHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQR-PDIVKEPKPVDAT-GAVDPLKPDDRMITNFHANL 106 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~-~~i~~~~~~~~~~-~~~~~~~~~~ri~~n~~~~i 106 (492) |..+|... ..+ +...... +......+=.|. ++......+.... ........-+ -.+.+++.+ T Consensus 1 ~~~~~~a~------------~~~-~~~~a~~--~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY-~~~~l~r~i 64 (461) T protein:vir:80 1 MYSIDKAK------------QAK-IDSKIVN--RNDFMVGHGKANSRDKLTRQTPGNGQKLDLKACENLY-ASNSIAMNI 64 (461) T ss_pred Cccchhhh------------hhh-hhhhhhh--hhHHHhhcCCcchhhhhhccccCcccccCHHHHHHHH-HhCCccchh Confidence 11111110 000 0100110 100111111111 1100000000000 0000000001 145788999 Q ss_pred HHHHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc---eEEEEEcccce--- Q lcl|Aclame:pro 107 VDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGE---FKLFRVPAEQG--- 179 (492) Q Consensus 107 vd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~---~~i~~~~p~~~--- 179 (492) |+..+..++.+++.+++++++..+.++.+++ -+....+.++.+.+..||.|++++-..+... .....+.|... T Consensus 65 Vd~~a~d~~r~g~~i~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~ 144 (461) T protein:vir:80 65 VDIISEDMVRAGWSLKTDNKEMKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSI 144 (461) T ss_pred hccchHHhhcCCeeeecCCHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccce Confidence 9999999999999999999888777777664 4788899999999999999998886533211 11111111110 Q ss_pred --EEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC--- Q lcl|Aclame:pro 180 --IPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN--- 254 (492) Q Consensus 180 --~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n--- 254 (492) +.+|+. ..+... .+. .+-..-.++.+ .+|.+......................|+ -++++|.+ T Consensus 145 ~~l~~~~~----~~i~~~-~~~-~dp~sp~fg~P---~~y~i~~~~~~~~~~~~~~~~~~~~~iH~---SRii~~~~~~~ 212 (461) T protein:vir:80 145 PYINTFNT----QKVTQL-YLN-QDMFSEHFGEV---EFFEVNRVSQLGEEILSGTTASTSEQIHR---SRIIHEQGLRF 212 (461) T ss_pred eEEEeccc----cccchh-hhc-ccCcCcccccc---eEEEEeccccccccccccccCccceEEcc---ccEEEecCCCC Confidence 000110 000000 000 00000001111 12222111100000000000111112233 24455533 Q ss_pred --ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCc---ccchhhHHhh----hhccceecCCCCcceee Q lcl|Aclame:pro 255 --NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDD---QELPEFKRLL----RYYGAIKVSDNGGVDTI 325 (492) Q Consensus 255 --n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~~~----~~~~~~~~~~~~d~~~l 325 (492) .-+|+|.++.+.+.+.+++.+.-..+..+..+..+.+.+.|... +........+ ....++.++.+.+.+ T Consensus 213 ~~~~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~e~~e-- 290 (461) T protein:vir:80 213 EGETKGRSIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDALNKDDKANLTAMLDFMFRTEALAIIKGDEQLT-- 290 (461) T ss_pred CccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecchHHhhhchHHHHHHHHHHHhcCCceEEEEcCCcceE-- Confidence 34699999999999999999998888888888888887766422 1111111111 223344455555544 Q ss_pred ecccCHHHHHHHHHHHHHHHHHHhCCCCCC--ccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 326 QVEVPVENSKKYLDELYQKIMLFGQAVDFS--SDKFGSAPSGVALEFLYTNLNLKADKLA-RKAKVAIQELLWFVFEHFD 402 (492) Q Consensus 326 ~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~--~~~~~~~~Sg~Al~~~~~~l~~k~~~~~-~~~~~~l~~~~~li~~~~~ 402 (492) ....+...+...++.+.+.|...+++|-.- ....|++.||..=... ....+..++ ..++..+++++++++...+ T Consensus 291 ~~~~~lsgl~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D~~~---yyd~i~~~qe~~l~p~le~l~~~i~~s~~ 367 (461) T protein:vir:80 291 KESTNVSGMKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYDVMN---YYARVSSIQENRLRPQLEYLTRLLMWASD 367 (461) T ss_pred EEecCcCCHHHHHHHHHHHHhhhhcCCeeeeecccCCccccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 445667788999999999999999999742 2333566777753333 333444444 5789999999998875432 Q ss_pred -----cCCcceeeeEEeCCCCCcCHHHHHHHHHHH---------hccCChHHHHHhC----CCCCC-----HHHHHHHHH Q lcl|Aclame:pro 403 -----IKGEHKDVDISFNYNKVANTELQVQTAQQS---------MGIVSHETVLENH----PFVED-----LQAELERIE 459 (492) Q Consensus 403 -----~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~---------~g~vs~et~l~~l----~~v~D-----~~~E~~ri~ 459 (492) .+.+..++++.|++-.+.+..+.|++..+. .|++|.+++.+.+ +..++ ...|.+.+. T Consensus 368 ~~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 447 (461) T protein:vir:80 368 DCGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAEIDKLA 447 (461) T ss_pred ccccccCccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCccCCCCCchhhhhh Confidence 233456789999999999999998875543 3566666654422 11000 011111111 Q ss_pred HHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 460 QEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 460 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ++.. +...+++.+ T Consensus 448 ~~~~--------------------~~~~~e~~~ 460 (461) T protein:vir:80 448 KLVY--------------------DAYAKKNAD 460 (461) T ss_pred hhcc--------------------ccccccCCC Confidence 1100 000001111 No 93 >protein:vir:100920 Length: 725 # NCBI annotation: Gp1 # Family: family:all:487 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006406;genbank:gi:46358698;genbank:GeneID:2777070 Probab=99.59 E-value=1.3e-14 Score=96.80 Aligned_cols=446 Identities=8% Similarity=0.016 Sum_probs=209.5 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) ++.+... ...+..++...+....+-+....+-.+||.|+| +....... . +...|.++|.. T Consensus 1 m~d~~~~-----------~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Q-W~~~~~~~----l----~~q~rp~~N~i 60 (725) T protein:vir:10 1 MADNENR-----------LESILSRFDADWTASDEARREAKNDLFFSRVSQ-WDDWLSQY----T----TLQYRGQFDVV 60 (725) T ss_pred CCchHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCC-CCHHHHHH----H----HhcCCCcccch Confidence 2221111 112234455555656666778888999999976 11111110 1 11223467999 Q ss_pred HHHHHHHHHhhhcCCeee--cCC---chhHHHHHH----HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEe---CCC---C Q lcl|Aclame:pro 104 ANLVDQKVSYIVGKPIAF--KHT---DDEVVKRID----EVLG-NRFDDKLHSVLTGASNKGIEWLHPYL---DEE---G 167 (492) Q Consensus 104 ~~ivd~~~~~l~g~~~~~--~~~---d~~~~~~l~----~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~---d~~---g 167 (492) +.+|+..+|+---+.+.+ .+. +.+..+.++ .+.+ ++.+.....+..+++++|.||+-|.. +++ + T Consensus 61 ~~~v~~v~g~e~~nr~d~~v~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~ 140 (725) T protein:vir:10 61 RPVVRKLVSEMRQNPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSN 140 (725) T ss_pred HHHHHHHHhhHHhCCcceEEecCCcchHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHhhcCcceeeeeccccCCCCCCC Confidence 999999999987665444 332 333334433 2332 57888888999999999999988743 332 3 Q ss_pred ceEEEEE----cccceEEEecCCCCC-c---eE-EEEEeeeec----------------------------------cce Q lcl|Aclame:pro 168 EFKLFRV----PAEQGIPIWTDKEHE-E---LE-AFIRMYKLE----------------------------------NET 204 (492) Q Consensus 168 ~~~i~~~----~p~~~~~i~d~~~~~-~---~~-~~i~~~~~~----------------------------------~~~ 204 (492) .++|..+ +|.+++ ||+.... . -. ++++.|... ... T Consensus 141 ~~~i~~~~i~~~~~~v~--~Dp~a~~~D~sDar~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vr 218 (725) T protein:vir:10 141 NQVIRREPIHSACSHVI--WDSNSKLMDKSDARHCTVIHSMSQNGWDDFAEKYDLDADNIPSFQNPNDWVFPWLTQDTIQ 218 (725) T ss_pred ceeeeeeecccCHhHcc--cCchhhccChhhhhhhhhhccCCHHHHHHHHHhCCCcccccccccccccccccccCCCeEE Confidence 3444433 344444 4432210 0 01 111111110 000 Q ss_pred eEEEEecceEE--EEEEe---cceeeeccccc----------c---------------------cc-ccccceeccCCcc Q lcl|Aclame:pro 205 KVEYWDKVTVN--YYVYE---NGSLIPDYSNN----------L---------------------EN-SKTHFSTGSWGKI 247 (492) Q Consensus 205 ~~~~~~~~~~~--~~~~~---~~~~~~~~~~~----------~---------------------~~-~~~~~~~~~~g~i 247 (492) .+++|....+. ++... ++......... . +. ......+.+.+.+ T Consensus 219 v~E~~~r~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~~f 298 (725) T protein:vir:10 219 IAEFYEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHI 298 (725) T ss_pred EEEEEEEEEEeeEEEEeccCCCCceeecchhhhHHHHHHhhcccchhhhhccceeeEEEEEeecchhhhcCCCCCCCCce Confidence 12223222211 11111 11111100000 0 00 0011123333567 Q ss_pred ceEeecCc-------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceec---- Q lcl|Aclame:pro 248 PFIPFKNN-------DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKV---- 316 (492) Q Consensus 248 Pvv~~~nn-------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~---- 316 (492) |+|+|.-. +.+.|.+.++++.++.+|...|.+...+...+...+.+.....+..............+.. T Consensus 299 P~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~ 378 (725) T protein:vir:10 299 PIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTD 378 (725) T ss_pred eEEEEEeeeeccCCcceeeeeeccchhHHHHHHHHHHHHHHHHHhcCCccccccHhhhhHHHHHHhccCCceeeeccccc Confidence 77775321 2233889999999999999999999888665554444322111111121111111111111 Q ss_pred CCCCc-----ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 317 SDNGG-----VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQ 391 (492) Q Consensus 317 ~~~~d-----~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~ 391 (492) ..+|. +.+...+.-..++...++.....|...+++.+.+.+..+++.||+|+.................+..+.+ T Consensus 379 ~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~l~~~~Dnl~~~~~ 458 (725) T protein:vir:10 379 ENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRADLETYVFQDNLATAMR 458 (725) T ss_pred ccCcccccccCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11221 2222222223566778999999999999988888777778899999998877776666666666777776 Q ss_pred HHHHHHHHHh----ccC---------Cc--c------------------------eeeeEEeCCCCCcCHHHHHHHHHHH Q lcl|Aclame:pro 392 ELLWFVFEHF----DIK---------GE--H------------------------KDVDISFNYNKVANTELQVQTAQQS 432 (492) Q Consensus 392 ~~~~li~~~~----~~~---------~~--~------------------------~~i~i~f~~~~p~d~~e~~~~~~k~ 432 (492) ++.++++.++ ... +. + .++.|.=.+..+.-..+.+..++.+ T Consensus 459 ~~g~~lL~lI~~~~~~er~~RI~~edg~~~~v~in~~~~d~~~G~~v~~Ndi~g~~Dv~v~~~p~~~s~r~~~~~~l~ql 538 (725) T protein:vir:10 459 RDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRSEILEL 538 (725) T ss_pred HHHHHHHHHHHHHcCCCcEEEEecCCCCcceeEeccccccccccchhhhhccccceeEEEeeccCcHHHHHHHHHHHHHH Confidence 6666665543 110 00 0 1122222333332233444455555 Q ss_pred hccCCh------HHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC---------------- Q lcl|Aclame:pro 433 MGIVSH------ETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN---------------- 488 (492) Q Consensus 433 ~g~vs~------et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 488 (492) .+.++. .+++..++. .+..++.+++|.++....... ............+..+... T Consensus 539 l~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~~-~~~~~e~~q~~~e~qq~~~~q~~~e~~q~~~~~~~ 617 (725) T protein:vir:10 539 LGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVK-KPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQ 617 (725) T ss_pred HHhccccchhHHHHHHHHhhcCCchhHHHHHHHHHhhhhhhccC-CccccchhHHHHHHHHHHHhhhHHHHHHHHHHHHH Confidence 433332 233333332 233445555555432111000 0000000000000000000 Q ss_pred -------CCCC Q lcl|Aclame:pro 489 -------KESE 492 (492) Q Consensus 489 -------~~~e 492 (492) .+.| T Consensus 618 ~qae~~ka~aE 628 (725) T protein:vir:10 618 GQAELAKAQNQ 628 (725) T ss_pred HHHHHHHHHHH Confidence 0000 No 94 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.58 E-value=4.2e-13 Score=88.41 Aligned_cols=421 Identities=11% Similarity=-0.008 Sum_probs=224.1 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-cccccccccc--------cccccc-cc Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP-KPVDATGAVD--------PLKPDD-RM 98 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~-~~~~~~~~~~--------~~~~~~-ri 98 (492) |..+|. .|.-+-.+..-++.+.....+-|.|-..-.... .........+ ..++.. -. T Consensus 1 mn~~dr-------------~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~r 67 (502) T protein:vir:79 1 MAILDD-------------VIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRENRTADQLSQYGAVSLREQARYLDN 67 (502) T ss_pred CchHhh-------------HHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHh Confidence 222322 222222222222222222233455543110000 0000000000 001100 01 Q ss_pred ccchHHHHHHHHHHhhhcC-CeeecC----Cc----hhH----HHHHHHHHhc-------cHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 99 ITNFHANLVDQKVSYIVGK-PIAFKH----TD----DEV----VKRIDEVLGN-------RFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 99 ~~n~~~~ivd~~~~~l~g~-~~~~~~----~d----~~~----~~~l~~~~~n-------~~~~~~~~~~~~~~~~G~~~ 158 (492) ..+|++-+|+..+++++|. ++++.+ .+ ++. .+.|..|-.+ +|...+..+.+..+..|.+| T Consensus 68 Nn~~a~~av~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f 147 (502) T protein:vir:79 68 NHDLVIGVFDKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVF 147 (502) T ss_pred cChHHHHHHHHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceE Confidence 3589999999999999996 655432 22 222 3344444332 56777777888999999999 Q ss_pred EEEEeCCCCc--------eEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccc Q lcl|Aclame:pro 159 LHPYLDEEGE--------FKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSN 230 (492) Q Consensus 159 ~~v~~d~~g~--------~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (492) +.+..++.+. +++..++|+.+---++ ....+..+|.+ ++.+..+ -|++....... T Consensus 148 ~~~~~~~~~~~~~g~~~~l~lq~iepd~l~~~~~--~~~~i~~GVe~--d~~Gr~~--------aY~i~~~hPgd----- 210 (502) T protein:vir:79 148 AQMVSGRINSLTPSAGVHFWLEALEPDFIPMTSD--ESNRLNQGVFV--DDWGRPE--------KYLVYKSRPVS----- 210 (502) T ss_pred EEEeecccCccCCCcccceEEEEecchhcCCCCC--CCCeeEeeeEE--CCCCceE--------EEEEeecCCCC----- Confidence 9987765432 5899999988732222 34456666654 2222222 22222111000 Q ss_pred ccccccccceeccCCccc---eEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcc-c- Q lcl|Aclame:pro 231 NLENSKTHFSTGSWGKIP---FIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQ-E- 300 (492) Q Consensus 231 ~~~~~~~~~~~~~~g~iP---vv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~-~- 300 (492) .....+.+|| |+++.. -..|.|.|.+++..+..++....-........+.....++...++ . T Consensus 211 --------~~~~~~~rvpA~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~ 282 (502) T protein:vir:79 211 --------GRQMETKEVDAERMLHLKFVRRLHQMRGTSLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYE 282 (502) T ss_pred --------CcccceeEechhheEEeecccCCccccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccc Confidence 0011123344 455433 235899999999999888877655555554444444444432111 0 Q ss_pred -------chhhHHhhhhcccee-cCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCC--CCccccccchhHHHHHH Q lcl|Aclame:pro 301 -------LPEFKRLLRYYGAIK-VSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVD--FSSDKFGSAPSGVALEF 370 (492) Q Consensus 301 -------~~~~~~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~--~~~~~~~~~~Sg~Al~~ 370 (492) .......+..+.++. +..|.++++.+++.+...+..++..+.+.|..-.++|- ++.+ +++ |-.+++. T Consensus 283 ~~~~~~~~~~~~~~l~pG~i~~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D-~s~--nySs~R~ 359 (502) T protein:vir:79 283 PDGNGSKENERELTIQPGIIYDDLKPGEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARN-YNG--TYSAQRQ 359 (502) T ss_pred cccCCCCCccccccccCCccccccCCCceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc-ccc--hHHHHHH Confidence 011111233344443 67788999998888888999999999999988888873 3322 332 5557777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--Hh-c-c--CC---cceeeeEEeCCCC--CcCHHHHHHHHHHH--hccC Q lcl|Aclame:pro 371 LYTNLNLKADKLARKAKVAIQE-LLWFVFE--HF-D-I--KG---EHKDVDISFNYNK--VANTELQVQTAQQS--MGIV 436 (492) Q Consensus 371 ~~~~l~~k~~~~~~~~~~~l~~-~~~li~~--~~-~-~--~~---~~~~i~i~f~~~~--p~d~~e~~~~~~k~--~g~v 436 (492) .+..........+..|...+-+ +++..+. ++ | + +. ......+.|..+. -.|....+++.... .|+. T Consensus 360 ~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~ 439 (502) T protein:vir:79 360 ELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAA 439 (502) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCC Confidence 7777777777777666654333 3332222 22 1 1 11 1223467784443 35888888877665 5899 Q ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhcccc--------CCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 437 SHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLD--------DGGADSAQQQERSNNKESE 492 (492) Q Consensus 437 s~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~e 492 (492) |.+..+...| .|+++.++++.+|.+...+.=.... ........++...+++++| T Consensus 440 t~~~~~a~~G--~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~e~~~~~~~~e 501 (502) T protein:vir:79 440 TESDWVRAGG--RNPDDVKRRRKAEIDENRKLDLVFDTDPASDKGGSSAATKRQEPQHTDDQSE 501 (502) T ss_pred CHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 9999998887 4899999999988765432211111 1111111112222222222 No 95 >protein:vir:77597 Length: 725 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063735;genbank:gi:51236726;genbank:GeneID:2944241 Probab=99.58 E-value=2.1e-14 Score=95.54 Aligned_cols=445 Identities=8% Similarity=-0.003 Sum_probs=205.3 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) +++.. .. ...+..++...+....+-+....+-.+||.|+|= ....... .+...|.++|.. T Consensus 1 m~d~~-~~----------~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw-~~~~~~~--------l~~q~rp~~N~i 60 (725) T protein:vir:77 1 MADNE-NR----------LESILSRFDADWTASDEARREAKNDLFFSRVSQW-DDWLSQY--------TTLQYRGQFDVV 60 (725) T ss_pred CCchH-HH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCC-CHHHHHH--------HHhcCCCccccH Confidence 22211 11 1223344555556566667777888999999761 1111110 111224467999 Q ss_pred HHHHHHHHHhhhcCCeee--cCC---chhHHHHHH----HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeC---CC---C Q lcl|Aclame:pro 104 ANLVDQKVSYIVGKPIAF--KHT---DDEVVKRID----EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLD---EE---G 167 (492) Q Consensus 104 ~~ivd~~~~~l~g~~~~~--~~~---d~~~~~~l~----~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d---~~---g 167 (492) +.+|+..+|+---+.+.+ .+. +.+..+.++ .+.+ ++.+.....+..+++++|.||+-|..| ++ + T Consensus 61 ~~~i~~v~g~~~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~ 140 (725) T protein:vir:77 61 RPVVRKLVSEMRQNPIDVLYRPKDGARPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSN 140 (725) T ss_pred HHHHHHHHhhHHhCCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhcCcceeeeeecccCCCCCCC Confidence 999999999887666444 333 333334333 2332 678888899999999999999888543 22 3 Q ss_pred ceEEEEE----cccceEEEecCCCCC-ce----EEEEEeeee----------------------------------ccce Q lcl|Aclame:pro 168 EFKLFRV----PAEQGIPIWTDKEHE-EL----EAFIRMYKL----------------------------------ENET 204 (492) Q Consensus 168 ~~~i~~~----~p~~~~~i~d~~~~~-~~----~~~i~~~~~----------------------------------~~~~ 204 (492) .++|... +|.+++ ||+.... .+ ..+++.|.. +... T Consensus 141 ~~~i~~~~~~~~~~~v~--~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vr 218 (725) T protein:vir:77 141 NQVIRREPIHSACSHVI--WDSNSKLMDKSDARHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQ 218 (725) T ss_pred ceeeEEeecccChhhce--eCchhhccChhhHHHHHHHhcCCHHHHHHHHhhCCcchhhcccccccccccccccCCCeeE Confidence 3444433 344444 3332211 00 011111110 0001 Q ss_pred eEEEEecceEEEEE--Eec---ceeeecccc----------c---------------------ccc-ccccceeccCCcc Q lcl|Aclame:pro 205 KVEYWDKVTVNYYV--YEN---GSLIPDYSN----------N---------------------LEN-SKTHFSTGSWGKI 247 (492) Q Consensus 205 ~~~~~~~~~~~~~~--~~~---~~~~~~~~~----------~---------------------~~~-~~~~~~~~~~g~i 247 (492) .+++|....+...+ ... +........ . .+. ......+.+.+.+ T Consensus 219 v~E~~~r~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~rv~~~~~~g~~~l~~~~~~~~~~~ 298 (725) T protein:vir:77 219 IAEFYEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHI 298 (725) T ss_pred EEEEEEEEEEeeEEEEecCCCCcceeecChhhHHHHHHHhhhcCchhhhhcccceeeeeEeeecCceeeccCCcCCCCcc Confidence 23344332222111 111 111000000 0 000 0011223334567 Q ss_pred ceEeecCc-------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE-ecCCcccchhhHHhhhhccce----e Q lcl|Aclame:pro 248 PFIPFKNN-------DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL-KNYDDQELPEFKRLLRYYGAI----K 315 (492) Q Consensus 248 Pvv~~~nn-------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~----~ 315 (492) |+|+|.-. +.+.|.+.++++.++.+|...|.+...+...+.-...+ .|... ..............+ . T Consensus 299 P~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~ 377 (725) T protein:vir:77 299 PIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIA-GFEHMYDGNDDYPYYLLNRT 377 (725) T ss_pred ceEEEeeeeeccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhccccccccchhhhh-HHHHHHHhccCCceeccccc Confidence 88775321 22338888999999999999999988776555433332 22111 111111111111001 1 Q ss_pred cCCCC-----cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 316 VSDNG-----GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAI 390 (492) Q Consensus 316 ~~~~~-----d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l 390 (492) ...+| .+.....+.=..++...++.....|-..+++.+-+.+..+++.||+|+...-......+......+..+. T Consensus 378 ~~~~g~~~~~~i~~~~~~~lp~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~~~~~~Dnl~~~~ 457 (725) T protein:vir:77 378 DENSGDLPTQPLAYYENPEVPQANAYMLEAATSAVKEVATLGVDTEAVNGGQVAFDTVNQLNMRADLETYVFQDNLATAM 457 (725) T ss_pred ccCCCcccccCccccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11222 2222222222245666888888899999988877777777889999999887777777666777777777 Q ss_pred HHHHHHHHHHhcc-------------CCc--c------------------------eeeeEEeCCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 391 QELLWFVFEHFDI-------------KGE--H------------------------KDVDISFNYNKVANTELQVQTAQQ 431 (492) Q Consensus 391 ~~~~~li~~~~~~-------------~~~--~------------------------~~i~i~f~~~~p~d~~e~~~~~~k 431 (492) +++.++++.++.. .+. + .++.|.=.+..+.-..+.++.++. T Consensus 458 ~~~g~~lL~lI~~~~~~~rv~RI~~ed~~~~~v~in~~~~~~~~G~~~~~NDi~g~~Dv~v~~~p~~~s~r~~~~~~l~q 537 (725) T protein:vir:77 458 RRDGEIYQSIVNDIYDVPRNVTITLEDGSEKDVQLMAEVVDLATGEKQVLNDIRGRYECYTDVGPSFQSMKQQNRAEILE 537 (725) T ss_pred HHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecccccccccchhHhhhhhccceeeEEeeccchHHHHHHHHHHHHH Confidence 7776666554311 000 0 112222222333223334444444 Q ss_pred HhccCCh------HHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCC---------------- Q lcl|Aclame:pro 432 SMGIVSH------ETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSN---------------- 487 (492) Q Consensus 432 ~~g~vs~------et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 487 (492) +.+.++. .++...++.. .-.++.++++.++...... .+...........+..+.. T Consensus 538 ll~~~~~~~~~~~~~l~~~~~l~d~~~~~e~~erirkq~~~~~~-~q~~~~~e~q~~~~~qq~~~~q~~~e~~q~q~~~~ 616 (725) T protein:vir:77 538 LLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGV-KKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLL 616 (725) T ss_pred HHHhccccchhHHHHHHHhhccccchHHHHHHHHHHhhhhhhhc-cCCCChhhHHHHHHHHHHHHHhHHHHHHHHHHHHH Confidence 4333332 1222223221 2234445555443211100 0000000000000000000 Q ss_pred -------CCCCC Q lcl|Aclame:pro 488 -------NKESE 492 (492) Q Consensus 488 -------~~~~e 492 (492) ..++| T Consensus 617 ~~qa~~~kaq~e 628 (725) T protein:vir:77 617 QGQAELAKAQNQ 628 (725) T ss_pred HHHHHHHHHHHH Confidence 00000 No 96 >protein:vir:105429 Length: 708 # NCBI annotation: gene 3 protein # Family: family:all:487 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958179;genbank:gi:41057281;genbank:GeneID:2716676 Probab=99.58 E-value=4e-14 Score=94.02 Aligned_cols=450 Identities=11% Similarity=0.033 Sum_probs=203.2 Q ss_pred hcCCChhhHHHHHH---HHHHHHHHHHHHHHHHHHHhc--CCCccccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 37 RTNNKPETLEEMIV---RYIKQHLEKLPEISIGQEYYE--QRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 37 ~~~~~~~~~~~~l~---~~i~~~~~~~~~~~~~~~YY~--G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~ 111 (492) +...+.+.+.++.. ..+......+.....-.+||. |+| +................+| .+.+|..+.+|+..+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~D~~f~~~~G~Q-W~~~~~~~l~~~~q~~grP--~~~~N~i~~~v~~v~ 77 (708) T protein:vir:10 1 MAETLEKKHERIMLRFDRAYSPQKEVREKCIEATRFARVPGGQ-WEGATAAGTKLDEQFEKYP--KFEINKVATELNRII 77 (708) T ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHhhhhcCCC--ceEEcchHHHHHHHH Confidence 22222222233322 222333444455555566765 554 2111111111111111122 367899999999999 Q ss_pred HhhhcCCeeec--CC----chhHHHHHH----HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC---C------CceEE Q lcl|Aclame:pro 112 SYIVGKPIAFK--HT----DDEVVKRID----EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE---E------GEFKL 171 (492) Q Consensus 112 ~~l~g~~~~~~--~~----d~~~~~~l~----~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~---~------g~~~i 171 (492) |+-..+.+.+. +. +.+..+.++ .+.+ ++.+.....+..+++++|.||+.+..|. . .++++ T Consensus 78 g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~d~i~~G~Gw~~~~~d~~~e~d~~~~~~~i~i 157 (708) T protein:vir:10 78 AEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDDRQRIAI 157 (708) T ss_pred HHHHhCCcceEEEcCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhhcccceeeeeeccccccCCCCCccccce Confidence 99987775553 22 233334333 3333 6788889999999999999999885532 1 12333 Q ss_pred -EEEcccceEEEecCCCCC-c----eEEEEEeeeec-------------------------------cceeEEEEecceE Q lcl|Aclame:pro 172 -FRVPAEQGIPIWTDKEHE-E----LEAFIRMYKLE-------------------------------NETKVEYWDKVTV 214 (492) Q Consensus 172 -~~~~p~~~~~i~d~~~~~-~----~~~~i~~~~~~-------------------------------~~~~~~~~~~~~~ 214 (492) .+.+|... ++||+.... . ..++++.|... .....++|....+ T Consensus 158 ~~~~~p~~~-v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~p~~a~~~~d~~~~~~~~~~~~~~d~v~v~ey~~r~~~ 236 (708) T protein:vir:10 158 EPIYDPSRS-VWFDPDAKKYDKSDALWAFCMYSLSPEKYEAEYGKKPPTSLDVTSMTSWEYNWFGADVIYIAKYYEVRKE 236 (708) T ss_pred EEeecchhh-cccCccccccChhhhhhhhhccCCCHHHHHHhCCCCcccccccccCCCccccccCCCceEEEEeeeEEEE Confidence 23344322 124432211 0 01111111100 0001122221111 Q ss_pred E--EEEEe---cceeeecccc----------c---------------------ccc-ccccceeccCCccceEeecCc-- Q lcl|Aclame:pro 215 N--YYVYE---NGSLIPDYSN----------N---------------------LEN-SKTHFSTGSWGKIPFIPFKNN-- 255 (492) Q Consensus 215 ~--~~~~~---~~~~~~~~~~----------~---------------------~~~-~~~~~~~~~~g~iPvv~~~nn-- 255 (492) . ++... ++........ . .+. ......+-+++.+|+|+|.-. T Consensus 237 ~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~le~~~~~p~~~fP~vP~~g~r~ 316 (708) T protein:vir:10 237 SVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFHEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEHIPLIPVYGKRW 316 (708) T ss_pred EEEEEEEecCCCCceeeecchhhhhHHHHHHhcccchhheeeeeeEEEEEEeecchhhhccCCCCCCCceeeEEEeeeee Confidence 1 00000 1111100000 0 000 111234456677888887422 Q ss_pred -----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccc-hhhHHhhhhccce-e----cCCCCcc-- Q lcl|Aclame:pro 256 -----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQEL-PEFKRLLRYYGAI-K----VSDNGGV-- 322 (492) Q Consensus 256 -----~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~-~----~~~~~d~-- 322 (492) +...|.+.++++.++.+|...|.+...+...+..+.++........ ..+.......... . ....|.+ T Consensus 317 ~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 396 (708) T protein:vir:10 317 FIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAFLPLREVRDKSGNIIA 396 (708) T ss_pred ccCCCcccceeecccchhHHHHHHHHHHHHHHHHhcCCcccccChhhhhhHHHHHhhccccchhhhcccccccccccccc Confidence 1235788999999999999999999888777665554422111111 1111111110000 0 0111111 Q ss_pred -----eeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 -----DTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFV 397 (492) Q Consensus 323 -----~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li 397 (492) ..+.+..-..++...++.....|-..+++.+-..+. ++|.||+||...-.............+..+.+++.+++ T Consensus 397 ~~~~~~~~q~~~~~~~~~~l~q~~~~~i~~vsG~~~~~lG~-~sn~SG~aI~~rq~qg~~~l~~~~Dnl~~~~~~~g~~l 475 (708) T protein:vir:10 397 GATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQM-PSNIAQETVNNLMNRADMASFIYLDNMAKSLKRAGEVW 475 (708) T ss_pred ccCCccccCCccchHHHHHHHHHHHHHHHHHhCcChhHccC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 122222334557777888888888888877666664 45789999998877777777777777777777776666 Q ss_pred HHHhcc----------CCc---------------c--------e-------eeeEEeCCCCCcCHHHHHHHHHHHhccCC Q lcl|Aclame:pro 398 FEHFDI----------KGE---------------H--------K-------DVDISFNYNKVANTELQVQTAQQSMGIVS 437 (492) Q Consensus 398 ~~~~~~----------~~~---------------~--------~-------~i~i~f~~~~p~d~~e~~~~~~k~~g~vs 437 (492) +.++.. .++ . . +|.|.=.+..+.-..+.++.++.+.+.++ T Consensus 476 L~li~~~y~~er~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~yDv~i~~~p~~~s~r~~~~~~l~qll~~~~ 555 (708) T protein:vir:10 476 LSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRDATVSVLTNVLSSML 555 (708) T ss_pred HHHHHHHcCCCcEEEEecCCCCcceEEecceeccCCCcceeeeeccceeeEEEEEecccCchhHHHHHHHHHHHHHHhcC Confidence 654311 000 0 0 12222234444444556666666654333 Q ss_pred h---HH------HHHhCCCCCCHHHHHHHHHHHHHHH-------------HHhhccccCC---------CCCCCCcCCCC Q lcl|Aclame:pro 438 H---ET------VLENHPFVEDLQAELERIEQEQTEY-------------NKQLPNLDDG---------GADSAQQQERS 486 (492) Q Consensus 438 ~---et------~l~~l~~v~D~~~E~~ri~~E~~~~-------------~~~~~~~~~~---------~~~~~~~~~~~ 486 (492) . .+ +++.+ .....++-+++|++..... ....+..... .......+.+. T Consensus 556 p~~~~~~~~~~~~l~~~-D~p~~~ei~erir~~~~~~~~~~~~~~ee~q~~~~~q~~~q~q~~~~~~e~qa~~~~~qAe~ 634 (708) T protein:vir:10 556 PTDPMRPAIQGIILDNI-DGEGLDDFKEYNRNQLLISGIAKPRNEKEQQIVQQAQMAAQSQPNPEMVLAQAQMVAAQAEA 634 (708) T ss_pred CCchhhHHHHHHHHHhc-CCcChHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 11 22222 2234445555554322100 0000000000 00000000000 Q ss_pred CCCCCC Q lcl|Aclame:pro 487 NNKESE 492 (492) Q Consensus 487 ~~~~~e 492 (492) ....++ T Consensus 635 ~ka~a~ 640 (708) T protein:vir:10 635 QKATNE 640 (708) T ss_pred HHHHHH Confidence 000000 No 97 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.56 E-value=6.2e-14 Score=92.99 Aligned_cols=387 Identities=11% Similarity=0.030 Sum_probs=194.2 Q ss_pred HHHHHHHHHHhcCCCccccccc--ccccccccc---ccccccccccchHHHHHHHHHHhhhcCCeeecCCchh--HHHHH Q lcl|Aclame:pro 60 LPEISIGQEYYEQRPDIVKEPK--PVDATGAVD---PLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDE--VVKRI 132 (492) Q Consensus 60 ~~~~~~~~~YY~G~~~i~~~~~--~~~~~~~~~---~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~--~~~~l 132 (492) ....+-+...-.|--. .+.. ......... ...+-+ -.+.+++.+|+..+.-.+.+++.+++++.+ ..+.+ T Consensus 1 ~~~~D~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~l~a~Y-~~~~l~~~~vd~~a~d~~r~~~~i~~~d~~~~~~~~~ 77 (437) T protein:vir:52 1 MKFFDGIKSLALKLGS--KQEQTYYSPSLSLTDDLVQLEALW-RDNWIANKVCIKRPEDMVRNWREIYSNDLNSKQLDLF 77 (437) T ss_pred CchhhhhHhHHhcCCC--ccccceeecCccccccHHHHHHHH-HhCchhhHHhhcchHHhhcCCceEecCCCCHHHHHHH Confidence 1111111111111100 0000 000000000 000001 146889999999999999999999886533 33345 Q ss_pred HHHHhc-cHHHHHHHHHHHHHhcCeEEEEEEeCCC---------Cce-EEEEEcccceEEEecC-CCCCceEEEEEeeee Q lcl|Aclame:pro 133 DEVLGN-RFDDKLHSVLTGASNKGIEWLHPYLDEE---------GEF-KLFRVPAEQGIPIWTD-KEHEELEAFIRMYKL 200 (492) Q Consensus 133 ~~~~~n-~~~~~~~~~~~~~~~~G~~~~~v~~d~~---------g~~-~i~~~~p~~~~~i~d~-~~~~~~~~~i~~~~~ 200 (492) +..++. ++...+.++.+.+-.||.|++++-.+.. |.+ .+.+++|.++.|..-. .....+-++ T Consensus 78 ~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s~~fg------ 151 (437) T protein:vir:52 78 TKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLSPNFG------ 151 (437) T ss_pred HHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccccccC------ Confidence 544443 7788889999999999999999877542 222 2455555554432111 010001000 Q ss_pred ccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCC-ccceEeecCccCCCCcHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 201 ENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWG-KIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDL 279 (492) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~ 279 (492) ....|.+.++. .....+.....|--| .+| ...++-+|.|.++.+..-+.+++.+.-.. T Consensus 152 ------------~p~~y~v~~~~-------~~~~iH~SRii~~~~~~~~--~~~~~~~G~s~le~~~~~i~~~~~~~~~~ 210 (437) T protein:vir:52 152 ------------RYSEYSILGGS-------QSITVHHSRLIILNANDAP--LSDNDIWGVSDLEKIIDVLKRFDSASVNV 210 (437) T ss_pred ------------cceEEEEecCC-------cceeEccceeEEecCccCC--CccccccCCchHHHHHHHHHHHHHHHHHH Confidence 00111111110 000011111111111 122 22245579999999999999999998888 Q ss_pred HHHHHhcCCceEEEecCCc----c---cchhhHHh---h-hhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 280 SNTFKDSNELTYVLKNYDD----Q---ELPEFKRL---L-RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLF 348 (492) Q Consensus 280 ~~~~~~~~~~~l~~~g~~~----~---~~~~~~~~---~-~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~ 348 (492) +..+..+..+.+.+.|... . ...+.... . ...+++.++.+.+.+ ..+.+...+...++...+.|... T Consensus 211 ~~l~~~~~~~v~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e--~~~~~~sgl~~~l~~~~~~iaaa 288 (437) T protein:vir:52 211 GDLIFESKIDIFKIAGLSDKIAAGMENEVASVISAVQEIKSATNSLLLDAENEYD--RKELTFTGLKDLLTEFRNAVAGA 288 (437) T ss_pred HHHHHHcCCCceecchHHHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcCCcceE--EEecCcCCHHHHHHHHHHHHHHH Confidence 8878888888887776311 1 11111111 1 234555565554444 44566778888999999999999 Q ss_pred hCCCCCCcc--ccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHH Q lcl|Aclame:pro 349 GQAVDFSSD--KFGSAPSGVALEFLYTNLNLKADKLA-RKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQ 425 (492) Q Consensus 349 a~~p~~~~~--~~~~~~Sg~Al~~~~~~l~~k~~~~~-~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~ 425 (492) +++|-.-+. ..+|=.||..-...|. ..++..+ ..+...+++++.+++....... ..++.+.|++-...+..+. T Consensus 289 ~~iP~t~L~G~s~~Glasge~D~~~yy---d~i~~~Qe~~l~p~le~l~~~i~~~~~g~~-~~~~~~~f~pL~~~s~kek 364 (437) T protein:vir:52 289 ADMPVTILFGQSVSGLASGDEDIQNYH---EAIRRLQETRLRPIFEIIDPLICNELFGGL-PADWWFEFVPLTTVKQEQQ 364 (437) T ss_pred hcCchhhhcCcCcccccccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcceEEeCCcCCcCHHHH Confidence 999975332 1122245554433333 3333333 5788999999998875433222 2368899999988898888 Q ss_pred HHHHHHH---------hccCChHHHHHhC------CCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCC-cCCCCCCC Q lcl|Aclame:pro 426 VQTAQQS---------MGIVSHETVLENH------PFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQ-QQERSNNK 489 (492) Q Consensus 426 ~~~~~k~---------~g~vs~et~l~~l------~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 489 (492) ++...+. .|+++.+.+.+.| |.+++ +.-+.........+.....++ +....++. T Consensus 365 ae~~~~~a~a~~~~~~~g~i~~~e~r~~L~~~g~~~~i~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (437) T protein:vir:52 365 INMLNTFATAANTLIQNGVLNEYQIANELRESGLFANISA----------EHIEELKNADEFAGNFEEPEKMEGAQVQNS 434 (437) T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCc----------cccccccCCCCCCCccCCCCCCCCCCCCCC Confidence 8765442 3566665555433 11211 000001111111111111111 11111111 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) .+| T Consensus 435 ~~~ 437 (437) T protein:vir:52 435 EDQ 437 (437) T ss_pred CCC Confidence 111 No 98 >protein:vir:95449 Length: 584 # NCBI annotation: hypothetical protein ORF047 # Family: family:all:1548 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294640;genbank:gi:149408206;genbank:GeneID:5237016 Probab=99.55 E-value=3.6e-14 Score=94.28 Aligned_cols=431 Identities=10% Similarity=0.045 Sum_probs=227.3 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HH---HHHHHHHHHhcCCCccccccccccccccccccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KL---PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMI 99 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~---~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~ 99 (492) ++.|..+.- .+.- ...+..+|.+.++.... |. .+-.++++||.+-.. ++.. -...+. .+++. T Consensus 1 ~~~~~~~~~-~~~~----~~~~~~~v~~~~~~~~~~r~~~~~~w~el~~y~~a~~~---~~~~----~~~~~~--r~~~~ 66 (584) T protein:vir:95 1 MSVKVAELN-SLLV----RDSSAQWVAYLWDRFNNQRRQKIEEWKELRNYVFATDT---TTTS----NQGLPW--KNSTT 66 (584) T ss_pred CCcchhhhh-hhcc----ccchHHHHHHHHHHHHhhhchhhccCHHHHHHHHhhhh---hhhh----hccccc--ccccc Confidence 666555432 2221 33345566666655443 22 222678899988532 1111 111222 24677 Q ss_pred cchHHHHHHHHHHhhhcC---------CeeecCCchh--HHHHHHHHHh-----ccHHHHHHHHHHHHHhcCeEEEEEEe Q lcl|Aclame:pro 100 TNFHANLVDQKVSYIVGK---------PIAFKHTDDE--VVKRIDEVLG-----NRFDDKLHSVLTGASNKGIEWLHPYL 163 (492) Q Consensus 100 ~n~~~~ivd~~~~~l~g~---------~~~~~~~d~~--~~~~l~~~~~-----n~~~~~~~~~~~~~~~~G~~~~~v~~ 163 (492) +|.+.-+++..+++++.- -+.+..++.+ ..+.++.+.. .++.....++.+++..+|.|+..+++ T Consensus 67 ~~k~~~~~~~i~~~l~~~~Fp~~~w~~~v~~~~~~~~~~~~~ai~~~i~dkl~e~~~~~~~~~~i~d~~~~G~~~~k~~~ 146 (584) T protein:vir:95 67 LPKLCQIRDNLHSNYFSSLFPNDDWLRWVGYGKGDSTKTKAKAIQAYMSNKCRESHFRTEVSKLIYDYIDYGNAFATVSF 146 (584) T ss_pred hhHHHHHHHHHHHHHHHhhcCccceeeeecCCCchhhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhhccCCceEEEEeE Confidence 888888888888777432 1122223322 2555555543 37788899999999999999999876 Q ss_pred CCC-------------CceEEEEEcccceEEEecCCCCC--ceEEEEEeeeecc-------------------------- Q lcl|Aclame:pro 164 DEE-------------GEFKLFRVPAEQGIPIWTDKEHE--ELEAFIRMYKLEN-------------------------- 202 (492) Q Consensus 164 d~~-------------g~~~i~~~~p~~~~~i~d~~~~~--~~~~~i~~~~~~~-------------------------- 202 (492) ... .++++..++|..+| ||++... ..-+.+|.+.+.. T Consensus 147 ~~~~~e~~e~~~v~~~~~prieriSP~d~~--~Dpsa~~i~d~~fivrs~~T~~~L~~l~~~~~~~~y~~d~v~~~~~~~ 224 (584) T protein:vir:95 147 EAKYKEMTDGTLVPDYIGPRLVRISPLDIV--FNPLATSISDTFKIVRSVKTKGELMRLAQDEPEQSYWLEALKRREEIC 224 (584) T ss_pred eecceeeeccccccccccceEEeeChhhee--ecCCCCCccchhhhhhhhhhHHHHHHHHhhcCccccchHHHHHHHHhc Confidence 432 26899999999988 5655422 2222222211000 Q ss_pred ----------ce------------eEEEEecceEEEEEEecceeeec---------ccccccccccc--ceeccCCccce Q lcl|Aclame:pro 203 ----------ET------------KVEYWDKVTVNYYVYENGSLIPD---------YSNNLENSKTH--FSTGSWGKIPF 249 (492) Q Consensus 203 ----------~~------------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~--~~~~~~g~iPv 249 (492) .+ .++.+....+..+.+.+..+-.. +....+..... .-+.+.|.+|+ T Consensus 225 ~~~~~~~~~~~~~~~~~~~d~~~~~~ey~~~~~V~vl~~~g~~~~~~~~e~~~~~iv~v~~g~~iIR~~~np~~~~~~PF 304 (584) T protein:vir:95 225 RHLGGYSVEDFDKAAGFDVDGFGNLYEYYMSDWVEILEFYGDYHDKETGELQTNRIITVVDRSTEVRNESIPTWFGSAPI 304 (584) T ss_pred cCCCCCcccccccccccccccccccccccCCceeEEEeecccccccccCCCcccceEEEEeccEEEEeeecCCCCCCCCE Confidence 00 00111111122111111000000 00000011111 22355689999 Q ss_pred EeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCccee Q lcl|Aclame:pro 250 IPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDT 324 (492) Q Consensus 250 v~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 324 (492) +..+. .-+|.|..+.+.++++.+|.+.-.+.+.+.-+..|.+...+...+. ..+.+..+..+..|++++ T Consensus 305 ~~~~~~p~~~s~yG~gi~~ll~d~Q~~lna~~r~~iDnl~l~~~pv~k~~~~~~~~------~~~pg~~~~~~~~~~~q~ 378 (584) T protein:vir:95 305 YHVGWRFRPDNLWAMGPLDNLVGMQYRIDHLENAKADAVDLIIQPPLKIIGEVEEF------VWGPGAEIHLDQGGDVQE 378 (584) T ss_pred EEEcceeeeccccCCCchhhhhhHHHHHhHHHHHHHHHHHHhcCcceeeccccchh------cccCCceeecCCCCCcce Confidence 87654 3479999999999999999999999999999999977766543221 134566778888899999 Q ss_pred eeccc-CHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh Q lcl|Aclame:pro 325 IQVEV-PVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAI-QELLWFVFEHF 401 (492) Q Consensus 325 l~~~~-~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l-~~~~~li~~~~ 401 (492) +.++. +..+..+.+..+...+-..+++|..+.+..+ ++.++..+..+...+..-...+.+.|..++ ++++.++..+. T Consensus 379 ~~p~a~~~~s~~~~lq~~e~~me~~sGvp~~~~G~~~~~~~TAtg~s~l~naa~~~~r~~~~~f~~~ll~~l~~ll~~~~ 458 (584) T protein:vir:95 379 IAKNVNYIINADNQIQMLEDRMELYAGAPREAMGIRTPGEKTAFEVQQLGNAAGRIFQEKVTTFEVELLEPVLNAMLETA 458 (584) T ss_pred ecCchhhhhHHHHHHHHHHHHHHhhhCCChhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 98874 4455556678888888899999987765322 344555566677777777788888888886 77777777654 Q ss_pred ccCCcce---------------------eeeEEe--CCCCCcCHHHHHHHHHHHhcc------------CChHHHH---- Q lcl|Aclame:pro 402 DIKGEHK---------------------DVDISF--NYNKVANTELQVQTAQQSMGI------------VSHETVL---- 442 (492) Q Consensus 402 ~~~~~~~---------------------~i~i~f--~~~~p~d~~e~~~~~~k~~g~------------vs~et~l---- 442 (492) ...-+.. ++.-.| ......-..+.++..+.+..+ ++..... T Consensus 459 ~~nmd~~~~vr~~n~e~~~~~f~~i~r~Dl~g~~~~va~Ga~~~~~keq~~q~l~~ilq~~~~~~i~p~~~~~~l~~~la 538 (584) T protein:vir:95 459 TRNMDGSDVIRVMDTDLGVKEFMSVTREDITANGKIRPIGARHFGKQAQDLQNLVGIFNSQIGQMILPHTSGKALATFVD 538 (584) T ss_pred HhhccccCceeeeccccccccccccChhhhccCeeEEeehhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHHHHHHHH Confidence 2211111 111111 111111122333333332211 2222111 Q ss_pred --HhCCC----CCC----HHHHHHHHHHHHHHHH--HhhccccCCC Q lcl|Aclame:pro 443 --ENHPF----VED----LQAELERIEQEQTEYN--KQLPNLDDGG 476 (492) Q Consensus 443 --~~l~~----v~D----~~~E~~ri~~E~~~~~--~~~~~~~~~~ 476 (492) ..+|. ..+ .|.|.+....+.++.. +..++..+.- T Consensus 539 dl~~~p~~~~~~~~~~~~~Q~~~q~~~~~~q~~~~~~~~~~~~~~~ 584 (584) T protein:vir:95 539 DVTGLQGYEIFRPNVAVAEQAETQSLVAQAQEDLQLQAQMPAEGAI 584 (584) T ss_pred HHhCCCcccccCCCcccchhHHHHhhhHHHHHHHHHHHhhhhccCC Confidence 11231 011 1222322222211111 1111111111 No 99 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.52 E-value=6.7e-13 Score=87.34 Aligned_cols=435 Identities=10% Similarity=0.040 Sum_probs=218.3 Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhcCC--Cc-ccc--cccccccc------cccccccccc-ccccchHHHHHHHH Q lcl|Aclame:pro 45 LEEMIVRYIKQHLEKLP--EISIGQEYYEQR--PD-IVK--EPKPVDAT------GAVDPLKPDD-RMITNFHANLVDQK 110 (492) Q Consensus 45 ~~~~l~~~i~~~~~~~~--~~~~~~~YY~G~--~~-i~~--~~~~~~~~------~~~~~~~~~~-ri~~n~~~~ivd~~ 110 (492) +.+.+.+.+.......+ +...-...|.|- +. ... ++...... ......++.. -..++|++-+|+.. T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~ 80 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQ 80 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 11112222221111111 111111234442 11 000 00000000 0000001100 01358999999999 Q ss_pred HHhhhcCCeeecCC-------------ch----hHHHHHHHHHhc-----------cHHHHHHHHHHHHHhcCeEEEEEE Q lcl|Aclame:pro 111 VSYIVGKPIAFKHT-------------DD----EVVKRIDEVLGN-----------RFDDKLHSVLTGASNKGIEWLHPY 162 (492) Q Consensus 111 ~~~l~g~~~~~~~~-------------d~----~~~~~l~~~~~n-----------~~~~~~~~~~~~~~~~G~~~~~v~ 162 (492) +..++|.+++..+. ++ .+...|+.|.++ +|..++..+++..+..|.+|+... T Consensus 81 ~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~ 160 (553) T protein:vir:63 81 RDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAE 160 (553) T ss_pred HHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEee Confidence 99999999987642 12 233344555432 456667777889999999998876 Q ss_pred eCCC-C---ceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEe--cceeeecccccccccc Q lcl|Aclame:pro 163 LDEE-G---EFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYE--NGSLIPDYSNNLENSK 236 (492) Q Consensus 163 ~d~~-g---~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 236 (492) ..+. | .+++..++|+.+-.-++......+..+|.+-. .+..+- |++.. .+...........+ . T Consensus 161 ~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~--~Gr~va--------Y~i~~~hPgd~~~~~~~~~~~-~ 229 (553) T protein:vir:63 161 WDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDK--RGRPQG--------YWIQVAHPGDLYQMAPDMYKW-K 229 (553) T ss_pred eccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECC--CCceEE--------EEeeccCCCccccccccccce-e Confidence 5543 2 35889999988865555555566777776522 222222 22211 11110000000000 0 Q ss_pred ccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec-CCcccch-------- Q lcl|Aclame:pro 237 THFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN-YDDQELP-------- 302 (492) Q Consensus 237 ~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g-~~~~~~~-------- 302 (492) ........+.-=|+++. .-..|.|.|.+++..+..++....-........+.-...++. .+.+... T Consensus 230 r~~~~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~ 309 (553) T protein:vir:63 230 FVQQSKPWGRRQVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELPPEFIHSQMSGGSP 309 (553) T ss_pred eeccccccChhHheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCChhhhhhhcccccc Confidence 00000011111123322 234689999998888888887765544444444433334432 1110000 Q ss_pred ---------------------hhHHhhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccccc Q lcl|Aclame:pro 303 ---------------------EFKRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGS 361 (492) Q Consensus 303 ---------------------~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~ 361 (492) .....+..+.+..+..|.++++.++..+...+..+.+.+.+.|..-.++|-......-+ T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s 389 (553) T protein:vir:63 310 NADMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFS 389 (553) T ss_pred cccccccccccccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcc Confidence 00012334455567778899999888888899999998888887777766322211112 Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHhc----cCCc------------ceeeeEEeCCCCC--c Q lcl|Aclame:pro 362 APSGVALEFLYTNLNLKADKLARKAKVAIQE-LLWFVF--EHFD----IKGE------------HKDVDISFNYNKV--A 420 (492) Q Consensus 362 ~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~-~~~li~--~~~~----~~~~------------~~~i~i~f~~~~p--~ 420 (492) ..|-.+.+..+..........+..|...+-+ +++..+ +++. .+.. ...+.+.|..+-. . T Consensus 390 ~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~i 469 (553) T protein:vir:63 390 KANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQI 469 (553) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCcccc Confidence 3344466776666666666666666554433 333322 2221 1110 1124577855433 5 Q ss_pred CHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhcccc----------CCCCCCCCcCC--CC Q lcl|Aclame:pro 421 NTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLD----------DGGADSAQQQE--RS 486 (492) Q Consensus 421 d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~----------~~~~~~~~~~~--~~ 486 (492) |....+++.... .|+.|.+..+...| .|+++.++++.+|.+...+.=...+ ........++. .. T Consensus 470 DP~Ke~~A~~~~i~~G~~t~~~~~a~~G--~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (553) T protein:vir:63 470 DQLKETQAAVMRIDAGLSTYEREIARLG--GDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQ 547 (553) T ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCCC Confidence 778888877765 58999999999886 4899999999988765433200000 00000111111 11 Q ss_pred CCCCCC Q lcl|Aclame:pro 487 NNKESE 492 (492) Q Consensus 487 ~~~~~e 492 (492) ++++.| T Consensus 548 ~~~~~e 553 (553) T protein:vir:63 548 TSQQGE 553 (553) T ss_pred cccccC Confidence 122222 No 100 >protein:vir:9263 Length: 725 # NCBI annotation: 1 # Family: family:all:487 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720327;genbank:gi:24371585;genbank:GeneID:955785 Probab=99.52 E-value=3e-13 Score=89.22 Aligned_cols=446 Identities=9% Similarity=0.001 Sum_probs=202.5 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) ++.+... ...+..++...+....+-+....+-.+||.|+| +....... .+...|.++|.. T Consensus 1 m~d~~~~-----------~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Q-w~~~~~~~--------l~~q~rp~~N~i 60 (725) T protein:vir:92 1 MADNENR-----------LESILSRFDADWTASDEARREAKNDLFFSRISQ-WDDWLSQY--------TTLQYRGQFDVV 60 (725) T ss_pred CCchHHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCC-CCHHHHHH--------HHhcCCCcccch Confidence 2222111 112234455555656666777888899999976 11111110 111223467999 Q ss_pred HHHHHHHHHhhhcCCeee--cCC---chhHHHHHH----HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeC---CC---C Q lcl|Aclame:pro 104 ANLVDQKVSYIVGKPIAF--KHT---DDEVVKRID----EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLD---EE---G 167 (492) Q Consensus 104 ~~ivd~~~~~l~g~~~~~--~~~---d~~~~~~l~----~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d---~~---g 167 (492) +.+|+..+|+---+.+.+ .+. +.+..+.++ .+.+ ++.+.....+..+++++|.||+-|..| ++ + T Consensus 61 ~~~i~~v~g~e~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~ 140 (725) T protein:vir:92 61 RPVVRKLVSEMRQNPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNVAVREQIESGVGAWRLVTDYEDQSPTSN 140 (725) T ss_pred HHHHHHHHhhHHhCCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhcCcceeeeeecccCCCCCCC Confidence 999999999876665444 333 333334433 2322 678888899999999999999887533 22 3 Q ss_pred ceEEEEE---cccceEEEecCCCCCc-e----EEEEEeeee----------------------------------cccee Q lcl|Aclame:pro 168 EFKLFRV---PAEQGIPIWTDKEHEE-L----EAFIRMYKL----------------------------------ENETK 205 (492) Q Consensus 168 ~~~i~~~---~p~~~~~i~d~~~~~~-~----~~~i~~~~~----------------------------------~~~~~ 205 (492) .++|... +|... ++||+..... + ..+++.|.. +.... T Consensus 141 ~~~i~~~~i~~~~~~-V~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vrv 219 (725) T protein:vir:92 141 NQVIRREPIHSACSH-VIWDSNSKLMDKSDSRHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQI 219 (725) T ss_pred ceeeEEeeccCChhh-cccCchhhccChhhHHHHHHHhcCCHHHHHHHHhhcCcchhhhhhcccCCcccccccCCCeEEE Confidence 4444432 33332 1234322110 0 001111110 00011 Q ss_pred EEEEecceEEE--EEEe---cceeeeccccc-------------------------------ccc-ccccceeccCCccc Q lcl|Aclame:pro 206 VEYWDKVTVNY--YVYE---NGSLIPDYSNN-------------------------------LEN-SKTHFSTGSWGKIP 248 (492) Q Consensus 206 ~~~~~~~~~~~--~~~~---~~~~~~~~~~~-------------------------------~~~-~~~~~~~~~~g~iP 248 (492) +++|....+.. +... ++......... .+. ......+.+.+.+| T Consensus 220 ~e~~~r~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~~~P 299 (725) T protein:vir:92 220 AEFYEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIP 299 (725) T ss_pred EEEEEEEEEeeeEEeecCCCCCceeecChhhHHHHHHHHhccCchhhhhccceeeeEeeeeecchhhhcCCCCCCCCcee Confidence 23333222211 1111 01111100000 000 00111233335677 Q ss_pred eEeecCc-------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe-cCCcccchhhHHhhhhcccee---c- Q lcl|Aclame:pro 249 FIPFKNN-------DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK-NYDDQELPEFKRLLRYYGAIK---V- 316 (492) Q Consensus 249 vv~~~nn-------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~---~- 316 (492) +|+|.-. +.+.|.+.++++.++.+|...|.+...+...+.-.+++. |... ..............+. + T Consensus 300 ~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~ 378 (725) T protein:vir:92 300 IVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIA-GFEHMYDGNDDYPYYLLNRTD 378 (725) T ss_pred eEEEEeeeeccCCcccccceeccchhHHHHHHHHHHHHHHHHHhccCcccccchhhhh-HHHHHHhccCccceeeccccc Confidence 7775321 223388999999999999999999887765554333322 2111 1111111111111111 1 Q ss_pred CCCCc-----ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 317 SDNGG-----VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQ 391 (492) Q Consensus 317 ~~~~d-----~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~ 391 (492) ..+|. +++...+.-..++...++.....|...+++.+-..+..+++.||+|+...-.............+..+.+ T Consensus 379 ~~~g~~~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~n~~SG~ai~~rq~qg~~~l~~~~Dnl~~~~~ 458 (725) T protein:vir:92 379 ENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRADLETYVFQDNLATAMR 458 (725) T ss_pred cccccccccCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11222 2232222333566778999999999999988777777778899999998766666665566666666666 Q ss_pred HHHHHHHHH----hccC------Cc-----c------------------------eeeeEEeCCCCCcCHHHHHHHHHHH Q lcl|Aclame:pro 392 ELLWFVFEH----FDIK------GE-----H------------------------KDVDISFNYNKVANTELQVQTAQQS 432 (492) Q Consensus 392 ~~~~li~~~----~~~~------~~-----~------------------------~~i~i~f~~~~p~d~~e~~~~~~k~ 432 (492) ++.++++.+ +... ++ . .++.|.=.+..+.-..+.+..++.+ T Consensus 459 ~~g~~lL~lI~~~~~~~r~~RI~~edg~~~~v~in~~~~~~~~G~~~~~Ndi~g~~Dv~v~~~p~~~s~r~~~~~~l~ql 538 (725) T protein:vir:92 459 RDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRAEILEL 538 (725) T ss_pred HHHHHHHHHHHHhcCCCcEEEEecCCCCcceEEeccccccccccchhhhhccccceeeEEeeccChHHHHHHHHHHHHHH Confidence 666555544 3111 00 0 1112222223222233344444444 Q ss_pred hccCCh------HHHHHhCC--CCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC---------------- Q lcl|Aclame:pro 433 MGIVSH------ETVLENHP--FVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN---------------- 488 (492) Q Consensus 433 ~g~vs~------et~l~~l~--~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 488 (492) .+.++. -+++..++ .....++.++++.++...... .............+..+... T Consensus 539 ~~~~~~~~~~~~~~l~~~~~~~d~~~~~e~~erirkq~~~~~~-~~~~~~e~~q~~~~~qqa~~~q~~~e~~~~qa~~~~ 617 (725) T protein:vir:92 539 LGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGV-KKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQ 617 (725) T ss_pred HHhcccchhHHHHHHHHHhhcccchHHHHHHHHHHhhhchhcc-CCccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH Confidence 333332 12222222 122233444554432211000 00000000000000000000 Q ss_pred -------CCCC Q lcl|Aclame:pro 489 -------KESE 492 (492) Q Consensus 489 -------~~~e 492 (492) .+.| T Consensus 618 ~qae~~kaqaE 628 (725) T protein:vir:92 618 GQAELAKAQNQ 628 (725) T ss_pred HHHHHHHHHHH Confidence 0000 No 101 >protein:vir:105520 Length: 706 # NCBI annotation: phage portal protein # Family: family:all:487 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516189;genbank:gi:89885992;genbank:GeneID:3964380 Probab=99.49 E-value=5.1e-12 Score=82.48 Aligned_cols=447 Identities=10% Similarity=0.043 Sum_probs=203.6 Q ss_pred hcCCChhhHHHHH---HHHHHHHHHHHHHHHHHHHHhc--CCCccccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 37 RTNNKPETLEEMI---VRYIKQHLEKLPEISIGQEYYE--QRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 37 ~~~~~~~~~~~~l---~~~i~~~~~~~~~~~~~~~YY~--G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~ 111 (492) +.+.+.+.+.++. ...+....+.+.+...-.+||. |+| +................+| .+.+|..+.+|+..+ T Consensus 1 m~e~~~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~f~~~~G~Q-W~~~~~~~l~~~~q~~grP--~~~~N~i~~~v~~v~ 77 (706) T protein:vir:10 1 MAESRQKQHERVMLRFDRAWSPQQVVREKCIEATRFVRVPGGQ-WEGATVAGTKLDEQFEKYP--KFEINKVATELNRII 77 (706) T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc-CCHHHHHHHHhhhhhcCCC--ceEecchHHHHHHHh Confidence 2222222333333 3333344456666666778875 543 2111111111111111223 467899999999999 Q ss_pred HhhhcCCeeec--C----CchhHHHHHH----HHH-hccHHHHHHHHHHHHHhcCeEEEEEEeCC---------CCceEE Q lcl|Aclame:pro 112 SYIVGKPIAFK--H----TDDEVVKRID----EVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDE---------EGEFKL 171 (492) Q Consensus 112 ~~l~g~~~~~~--~----~d~~~~~~l~----~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~---------~g~~~i 171 (492) |+.-.+.+.+. + ++.+..+.++ .+. .++.+.....+..+++++|.||+-+..|- .+++++ T Consensus 78 g~~~~nr~~~~v~P~~~~~d~~~Ae~l~~l~~~~~~~~~~~~a~s~Af~d~i~~G~G~~ev~~d~~~~~d~~~~~~~i~i 157 (706) T protein:vir:10 78 SEYRNNRISVKFRPGDNAASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTTSFVNEYDPMDERQRIAV 157 (706) T ss_pred hHHHhCCCceEEecCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCcceEEeeeccccccCCCCCCcccee Confidence 99877765543 2 1223344443 233 36788889999999999999999885441 123444 Q ss_pred EEE-cccceEEEecCCCCC-c---e-EEEEEeeeecc------------------------------ceeEEEEecceEE Q lcl|Aclame:pro 172 FRV-PAEQGIPIWTDKEHE-E---L-EAFIRMYKLEN------------------------------ETKVEYWDKVTVN 215 (492) Q Consensus 172 ~~~-~p~~~~~i~d~~~~~-~---~-~~~i~~~~~~~------------------------------~~~~~~~~~~~~~ 215 (492) ..+ +|.+.+ +||+.... . - .++++.|...+ ....++|...... T Consensus 158 ~~v~~p~~~v-~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~fp~~~~~~~~~~~~~~~~d~~~~d~~~~~eyy~~~~~~ 236 (706) T protein:vir:10 158 EPIYDPARSV-WFDPDAKKYDKSDALWAFCMYSVSLEKYQSEYDKAPTSLDRVGSVSWQYDWFTPDVVYIAKYYEVRKES 236 (706) T ss_pred eeeccchhce-ecCchhcccChhhcceEeeeecCCHHHHHHhcCCChhhhhhhccccccccccCCCcceeccccccccee Confidence 433 566432 35542211 1 1 11222111100 0011122211100 Q ss_pred ----EEE---------Eecceeeeccc--ccc---------------------ccc-cccceeccCCccceEeecCcc-- Q lcl|Aclame:pro 216 ----YYV---------YENGSLIPDYS--NNL---------------------ENS-KTHFSTGSWGKIPFIPFKNND-- 256 (492) Q Consensus 216 ----~~~---------~~~~~~~~~~~--~~~---------------------~~~-~~~~~~~~~g~iPvv~~~nn~-- 256 (492) +|. +.......... ... +.. .....+-+.+.+|+|+|.-.+ T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~g~~~l~~~~p~~~~~~P~vP~~g~r~~ 316 (706) T protein:vir:10 237 VDVISYRQPLTQEIATYDSEQIADIQDELEQAGFEEIGRRSVKRRRIYVAVVDGDGFLEKPRRIPGEHIPLIPVYGKRWF 316 (706) T ss_pred EEEEEeeccccCCceeeccchhhhhHHHHhhCCchhhhhcccceeeEEEEeeccccccccCCCCCCCccceEEEeecccc Confidence 000 00000000000 000 000 001122333788998874322 Q ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhh-----ccceec---C-CCCcc Q lcl|Aclame:pro 257 -----LEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRY-----YGAIKV---S-DNGGV 322 (492) Q Consensus 257 -----~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-----~~~~~~---~-~~~d~ 322 (492) ...|.+.++++.++.+|...|.+.+.+......... |.. ++...+...... ...+.. + .+|.+ T Consensus 317 ~d~~~~~~G~vr~~~d~Q~~~N~~~s~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~g~i 393 (706) T protein:vir:10 317 IDDVERVEGHIAKAMDPQRLYNLQVSMLADAAAQDPGQTPI--VDM-EQIRGLEQHWEGRNRKRPAFLPLRTVTDKTGNV 393 (706) T ss_pred ccccCcccceeccchhhHHHHHHHHHHHHHHHHhcCCcccc--cch-hHHHHHHHHhhhcccccccchhcccccCCCCcc Confidence 235788899999999999999999987555443222 211 111111111100 000111 1 12221 Q ss_pred -------eeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 -------DTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLW 395 (492) Q Consensus 323 -------~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~ 395 (492) .++..+.-..++...++.....|...+++.+.+.+.. +|.||+||...-.............+..+.+++.+ T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vsGi~~~~lG~~-sn~SG~Ai~~rq~qg~~~~~~~~Dnl~~~~~~~g~ 472 (706) T protein:vir:10 394 VAPANVAGYTQAPVLNQALAALLQQTSADIQEVTGSSQAMQQMP-SNVARETVNSLLNRSDMASFIYLDNMAKSLKRAGE 472 (706) T ss_pred cccccccccCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHcCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2222222334566778888888888888877766654 56899999988777777777777777788877766 Q ss_pred HHHHHhcc----------C---C--c---------------------c----eeeeEEeCCCCCcCHHHHHHHHHHHhcc Q lcl|Aclame:pro 396 FVFEHFDI----------K---G--E---------------------H----KDVDISFNYNKVANTELQVQTAQQSMGI 435 (492) Q Consensus 396 li~~~~~~----------~---~--~---------------------~----~~i~i~f~~~~p~d~~e~~~~~~k~~g~ 435 (492) +++.++.. . + + . .+|.|.=.+..+.-..+..+.++.+.+. T Consensus 473 ~lL~li~~~y~~~R~~RI~~ed~~~~~v~in~~~~d~~~G~~~~~nDi~~g~yDv~i~~~p~~~t~r~~~~~~m~el~~~ 552 (706) T protein:vir:10 473 IWLSMAREIYGSDREVRIVHEDGTDDIALMNAAVLDNQTGRVVALNDLSTGRYDVSVDVGPSYSARRDATVNALTQLLQG 552 (706) T ss_pred HHHHHHHHHcCCCcEEEEecCCCCccceeeccceeccccCceeeeecceeeeEEEEEecccCcchHHHHHHHHHHHHHHh Confidence 66655321 0 0 0 0 0111222344444455566666665442 Q ss_pred C-Ch--HH------HHHhCCCCCCHHHHHHHHHHHHHHH-------------H---Hhhccc----cCCCCCCCCcCCCC Q lcl|Aclame:pro 436 V-SH--ET------VLENHPFVEDLQAELERIEQEQTEY-------------N---KQLPNL----DDGGADSAQQQERS 486 (492) Q Consensus 436 v-s~--et------~l~~l~~v~D~~~E~~ri~~E~~~~-------------~---~~~~~~----~~~~~~~~~~~~~~ 486 (492) + +. .+ +++.++ +...++-.++|++..... . ++.+.. ............++ T Consensus 553 ~~p~~~~~~~l~~~~~~~~d-~p~~~e~~e~irk~~~~q~~~~~~~~~eq~~~~q~qq~q~~q~~~~~~~~~aq~~~~qA 631 (706) T protein:vir:10 553 MLPQDPMRPALMGIIIDNME-GEGLDDFKAFNRRQLLTQGIVKPRNQQEQAIVQQAQQAQATQPDPNMLLAQAQMVVAQA 631 (706) T ss_pred cCCcchhhHHHHHHHHhhcC-ccchHHHHHHHHHhhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 21 12 233322 223344445554321100 0 000000 00000000000000 Q ss_pred CCCCCC Q lcl|Aclame:pro 487 NNKESE 492 (492) Q Consensus 487 ~~~~~e 492 (492) +-...+ T Consensus 632 ~~~k~~ 637 (706) T protein:vir:10 632 EAQKSQ 637 (706) T ss_pred HHHHHH Confidence 000000 No 102 >protein:vir:3520 Length: 720 # NCBI annotation: P19 # Family: family:all:487 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050980;genbank:gi:9633566;genbank:GeneID:1262313 Probab=99.49 E-value=4.9e-13 Score=88.09 Aligned_cols=443 Identities=11% Similarity=0.050 Sum_probs=192.2 Q ss_pred ChhhHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCcccccccccccc-ccccccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 41 KPETLEEMIVRYIKQ-------HLEKLPEISIGQEYYEQRPDIVKEPKPVDAT-GAVDPLKPDDRMITNFHANLVDQKVS 112 (492) Q Consensus 41 ~~~~~~~~l~~~i~~-------~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~-~~~~~~~~~~ri~~n~~~~ivd~~~~ 112 (492) -.+.+.+++.++... ..+-+.....-.+||.+..+-+........+ ......+| .+.+|..+.+|+..+| T Consensus 1 ma~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~d~~f~~~~G~QW~~~~~~~~~~~l~~~~~P--~~~~N~i~~~v~~v~g 78 (720) T protein:vir:35 1 MAETLQKRHEQIMRKFDRAHSPQEAVREKCLEATRFARVPGGQWEGATAAGSELGKHFEKYP--KFEINKISTELNRIIS 78 (720) T ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhCCCC--eEEEccHHHHHHHHHh Confidence 122233333333222 2233444555677776333222111110000 00011223 3567999999999999 Q ss_pred hhhcCCeee--cCC----chhHHHHHH----HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC------C---CceEEE Q lcl|Aclame:pro 113 YIVGKPIAF--KHT----DDEVVKRID----EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE------E---GEFKLF 172 (492) Q Consensus 113 ~l~g~~~~~--~~~----d~~~~~~l~----~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~------~---g~~~i~ 172 (492) +---+.+.+ .+. +.+..+.++ .+.+ ++.+.....+..+++++|.||+-|..|- + +.+++. T Consensus 79 ~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~v~~d~~~~~d~~~~~~~i~i~ 158 (720) T protein:vir:35 79 EYRHNRITVKFRPGDKTASEALANKLNGLFRADYEETDGGEACDNAFDDGSTGGFGCFRLTTNLVNALDPMDERQRICLE 158 (720) T ss_pred HHHhCCCceEEEcCCCcchHHHHHHHHHHHHHHHHhcCchHHHhHHHHHhhhccceeEEeeecccccCCCCcccceeeEe Confidence 997666544 332 233334443 2332 6788888999999999999999987642 1 123333 Q ss_pred EE-cc-cceEEEecCCCCC-c----eEEEEEeeeecc------------------------------ceeEEEEecceEE Q lcl|Aclame:pro 173 RV-PA-EQGIPIWTDKEHE-E----LEAFIRMYKLEN------------------------------ETKVEYWDKVTVN 215 (492) Q Consensus 173 ~~-~p-~~~~~i~d~~~~~-~----~~~~i~~~~~~~------------------------------~~~~~~~~~~~~~ 215 (492) .+ +| .+++ ||+.... . ..++++.|...+ -..+++|...++. T Consensus 159 ~v~~~~~~v~--~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~d~~~~~~v~i~E~~~~~~~~ 236 (720) T protein:vir:35 159 PIYDPARSVW--FDPDAKKYDKSDAEWAFCMYSLSAEKYKAEYNKDPATLMSGIERSWDYDWYDVDVVYIAKYYEVKKES 236 (720) T ss_pred cccCchhhee--ecccccccChhhhhhhhhhcCCCHHHHHHhCCCccccccccccccccccccCCCceEEEEeeEEEEEE Confidence 22 23 3333 4432211 0 011122221100 0012222222211 Q ss_pred --EEEE---ecceeeecccc--------------------------------ccccccccceeccCCccceEeecCcc-- Q lcl|Aclame:pro 216 --YYVY---ENGSLIPDYSN--------------------------------NLENSKTHFSTGSWGKIPFIPFKNND-- 256 (492) Q Consensus 216 --~~~~---~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~g~iPvv~~~nn~-- 256 (492) .+.. .++........ .+........+-+++.+|+|||.-.+ T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~~g~~~l~~~~~~p~~~fP~vP~~g~r~~ 316 (720) T protein:vir:35 237 VDVVSFQNPLTSETVTYDSDQLELVEDELADIGFIEAARRTIKRRRVYVSVVDGEGFLEKAQRIPGEHIPLIPVYGKRWF 316 (720) T ss_pred EEEEEeecCCCCCeeecCCccHHHHHHHHhhhccccccccceeEEEEEEEeeccchhcccCCCCCCCccceEEEEeeeec Confidence 1110 01111110000 00001112234456778888874321 Q ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhh----hhccce-e----cCCCC-- Q lcl|Aclame:pro 257 -----LEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLL----RYYGAI-K----VSDNG-- 320 (492) Q Consensus 257 -----~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----~~~~~~-~----~~~~~-- 320 (492) ...|.+..+++.+|.+|...|.++..+..... ..-.|... ....+.... ...... . ...+| T Consensus 317 ~d~~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~--~~~~~a~~-~~~~~~~~~a~~~~~~~~~l~~~~~~~~~G~~ 393 (720) T protein:vir:35 317 IDDIERVEGHIAKAMDAQRLYNLQVSMLADSATQDTG--SIPIVGKS-QIKTLEKYWANRNKNRPAFLPLNEIVDKQGNI 393 (720) T ss_pred cCCCcccceeeecchhHHHHHHHHHHHHHHHHHcCCc--cccccCcc-hHHHHHHHhhccccccccccccccccccCccc Confidence 12578889999999999999999999865443 33333211 112222211 111110 0 11122 Q ss_pred -----cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 -----GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLW 395 (492) Q Consensus 321 -----d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~ 395 (492) ...+.....-...+...++.-...|-..+++.+-..+..+ |.||+|+...-..-..........+..+.+++.+ T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGi~~~~lG~~s-n~SG~Ai~~rq~qg~~~~~~~~Dnl~~~~~~~g~ 472 (720) T protein:vir:35 394 IAPPTPVGYTQPQPLNQAMAALLQQTGADIQEVTGSSQAMQPMPS-NIAKETVNHLMHRSDMSSFIYLDNMAKSLKRAGE 472 (720) T ss_pred ccCCCcccccCCCCCchHHHHHHHHHHHHHHHHhCCChHHcCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2233333233345566777777788888877776666544 5899999986655555555566666666666666 Q ss_pred HHHHHh----cc------C---C--cc-------------------------eeeeEEeCCCCCcCHHHHHHHHHHHhcc Q lcl|Aclame:pro 396 FVFEHF----DI------K---G--EH-------------------------KDVDISFNYNKVANTELQVQTAQQSMGI 435 (492) Q Consensus 396 li~~~~----~~------~---~--~~-------------------------~~i~i~f~~~~p~d~~e~~~~~~k~~g~ 435 (492) +++.++ .. . + +. .+|.+.=.+..+.-..+..+.++.+.+. T Consensus 473 ~lL~lI~~~y~~er~~RI~~ed~~~~~v~~n~~~~d~~~g~~v~~NDi~~g~yDv~v~~~p~~~s~req~~~~m~qll~~ 552 (720) T protein:vir:35 473 VWLSMAREVYGSDRQVRIVNADGTDDIALMSVVINDNQTGQVVAMNDLSSGRYDVTVDVGPSYTARRDATVSVLTNLLAG 552 (720) T ss_pred HHHHHHHHHcCCCcEEEEecCCCCcceEeechhhhccCCCceeeeecceeeeeEEEEecccCcccHHHHHHHHHHHHHHh Confidence 655443 11 0 0 00 0112222333443344455556555443 Q ss_pred CChHH---------HHHhCCCCCCHHHHHHHHHHHHHHHH-----------------Hhhc--c--ccCCCCCCCCcCCC Q lcl|Aclame:pro 436 VSHET---------VLENHPFVEDLQAELERIEQEQTEYN-----------------KQLP--N--LDDGGADSAQQQER 485 (492) Q Consensus 436 vs~et---------~l~~l~~v~D~~~E~~ri~~E~~~~~-----------------~~~~--~--~~~~~~~~~~~~~~ 485 (492) ++... .++.++ ....++-++++.+...... +..+ . .....+...+-+.+ T Consensus 553 ~~p~~~~~~~~~~~ile~~d-~p~~~e~~erirk~~~~~~~~~~~~~e~qq~~a~~qq~~qq~~~e~~~aqa~l~qaqae 631 (720) T protein:vir:35 553 MLPQDPMRQVLQGIILDNME-GEGLDEFKEYNRKQLLTQGVVKPRNTEEEQMVAQMIQQAQQPNAELVAAQGVLMQGQAE 631 (720) T ss_pred cCCCchhHHHHHHHHHHhcC-chhHHHHHHHHHhhcchhcccCccChhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH Confidence 33221 222222 1222333334332211000 0000 0 00000000000000 Q ss_pred CCCCCCC Q lcl|Aclame:pro 486 SNNKESE 492 (492) Q Consensus 486 ~~~~~~e 492 (492) ....+++ T Consensus 632 ~~kaqa~ 638 (720) T protein:vir:35 632 VQKAKNE 638 (720) T ss_pred HHHHHHH Confidence 0000000 No 103 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.48 E-value=4.5e-12 Score=82.80 Aligned_cols=433 Identities=10% Similarity=0.014 Sum_probs=219.3 Q ss_pred ChhhhHHH-------HHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 1 MQFIQLIS-------QVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQR 73 (492) Q Consensus 1 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~ 73 (492) ||.-.++. +...++..++.- ..-.+..-...... ..+.+..-..... .+.++.|. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~~w~~~~~s---~~~~i~~~~~~lr------~RaRdl~r-- 62 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYAGYHGGGGG-------FGGQLRGWNPPSES---ADAALLPNYSRGN------ARADDLVR-- 62 (530) T ss_pred CccceeecCccccchHHHhhhhcccCC-------CCCcccccccCCCC---HHHHHHHHHHHHH------HHHHHHHh-- Confidence 44333322 111111111100 00000000000000 0011111101000 11122222 Q ss_pred CccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCC------------chh----HHHHHHHHHh Q lcl|Aclame:pro 74 PDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT------------DDE----VVKRIDEVLG 137 (492) Q Consensus 74 ~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~------------d~~----~~~~l~~~~~ 137 (492) .++|++-+|+..+.+++|.+++..+. +++ ....|..|-. T Consensus 63 -------------------------Nn~~a~~av~~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~ 117 (530) T protein:vir:38 63 -------------------------NNGYAANAVQLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAE 117 (530) T ss_pred -------------------------cChHHHHHHHHHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhc Confidence 23789999999999999999887652 222 2334444432 Q ss_pred c-----------cHHHHHHHHHHHHHhcCeEEEEEEeCCCC----ceEEEEEcccceEEEecCCCCCceEEEEEeeeecc Q lcl|Aclame:pro 138 N-----------RFDDKLHSVLTGASNKGIEWLHPYLDEEG----EFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN 202 (492) Q Consensus 138 n-----------~~~~~~~~~~~~~~~~G~~~~~v~~d~~g----~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 202 (492) + +|...+..+.+..++.|.+|+.+..++.+ .+++..++|+.+---++.+..+.+..+|.+ +.. T Consensus 118 ~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~--d~~ 195 (530) T protein:vir:38 118 DDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKI--NDS 195 (530) T ss_pred CCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEE--CCC Confidence 1 45666777788999999999988765543 268999999887544444445667777764 222 Q ss_pred ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCc-----cCCCCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRLS 277 (492) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn-----~~~~s~~~~v~~liD~~~~~~s 277 (492) +..+ -|++....... .. ...+.........+.--|+++... ..|.|+|.+++..+..++.... T Consensus 196 Gr~~--------aY~i~~~~~~~--~~--~~~~~~~~~~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~d 263 (530) T protein:vir:38 196 GAAL--------GYYVSDDGYPG--WM--AQNWTYIPRELPGGRPSFIHVFEPMEDGQTRGANAFYSVMEQMKMLDTLQN 263 (530) T ss_pred CceE--------EEEEeeccCCC--cc--ccccceeeeeeccChhHeEeeccccCCCcccCCchHHHHHHHHHHHhHHHH Confidence 2222 22222110000 00 000000001111222235555432 3589999998888888877755 Q ss_pred HHHHHHHhcCCceEEEecCC-------------cccchh----hH-----------HhhhhccceecCCCCcceeeeccc Q lcl|Aclame:pro 278 DLSNTFKDSNELTYVLKNYD-------------DQELPE----FK-----------RLLRYYGAIKVSDNGGVDTIQVEV 329 (492) Q Consensus 278 ~~~~~~~~~~~~~l~~~g~~-------------~~~~~~----~~-----------~~~~~~~~~~~~~~~d~~~l~~~~ 329 (492) -........+.-...++... ...... .. ..+..+.+..+..|.++++.+++. T Consensus 264 ael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~ 343 (530) T protein:vir:38 264 TQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQD 343 (530) T ss_pred HHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccceeccCceeeecCCCCeeeeeCCCC Confidence 44444444333333333211 000000 00 013344455667788899999888 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHhc--c- Q lcl|Aclame:pro 330 PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAI-QELLWFVF--EHFD--I- 403 (492) Q Consensus 330 ~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l-~~~~~li~--~~~~--~- 403 (492) +...+..+.+.+.+.|..-.++|-..+...-+..|-.|.+..+..........+..|...+ +.+++..+ +++. + T Consensus 344 p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~av~~G~i~ 423 (530) T protein:vir:38 344 TDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKFVASRQACQMFLCWLEEAIVRRVVT 423 (530) T ss_pred CCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcc Confidence 8889999999988888877776633221111233444677777777777777666665543 22333222 1221 1 Q ss_pred -CC----cc-----eeeeEEeCCC--CCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh- Q lcl|Aclame:pro 404 -KG----EH-----KDVDISFNYN--KVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQ- 468 (492) Q Consensus 404 -~~----~~-----~~i~i~f~~~--~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~- 468 (492) +. ++ ....+.|..+ .-.|....+++.... .|+.|.+..+...+ .|+++.++++.+|.+...+. T Consensus 424 ~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G--~D~~~v~~q~a~e~~~~~~~G 501 (530) T protein:vir:38 424 LPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRG--DDYQEIFAQQVRESMERRAAG 501 (530) T ss_pred CCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcC--CCHHHHHHHHHHHHHHHHHcC Confidence 11 11 1245677433 335777778777665 58999999998887 48999999999988655433 Q ss_pred hccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 469 LPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +.................+.++++ T Consensus 502 l~~~~~~~~~~~~~~~~~~~~~~d 525 (530) T protein:vir:38 502 LNPPAWAAAAFEAGVKKSNEEEQD 525 (530) T ss_pred CCCCCCcccccCCCCCCCCCCCCC Confidence 111111111221111222222222 No 104 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.47 E-value=7.7e-12 Score=81.50 Aligned_cols=436 Identities=9% Similarity=0.022 Sum_probs=232.1 Q ss_pred HhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc------cccccccccc------cccccccc-ccccc Q lcl|Aclame:pro 35 IVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVK------EPKPVDATGA------VDPLKPDD-RMITN 101 (492) Q Consensus 35 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~------~~~~~~~~~~------~~~~~~~~-ri~~n 101 (492) +.+....+..+...+.-... .+..........|+|-..-.. ++........ ....++.. -..++ T Consensus 1 ~~r~~~~~~~~dr~i~~~~~---~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~ 77 (505) T protein:vir:96 1 MKRAEKKPSLAQRMVNWAWY---RYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNP 77 (505) T ss_pred CCCCccccchhhcccchhhh---hhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCh Confidence 33344455554444432221 112222233445665331100 1100000000 00011110 01358 Q ss_pred hHHHHHHHHHHhhhc-CCeeecCC--------chhHHHH----HHHHHhc---------cHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 102 FHANLVDQKVSYIVG-KPIAFKHT--------DDEVVKR----IDEVLGN---------RFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 102 ~~~~ivd~~~~~l~g-~~~~~~~~--------d~~~~~~----l~~~~~n---------~~~~~~~~~~~~~~~~G~~~~ 159 (492) |++-+|+..+..++| .++++.+. +++..+. |+.|-+. +|...+..+.+..+..|.+|+ T Consensus 78 ~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~ 157 (505) T protein:vir:96 78 YAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLV 157 (505) T ss_pred HHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEE Confidence 999999999999999 68877642 4444444 4444321 355666778889999999998 Q ss_pred EEEeCCCC--ceEEEEEcccceEEEecC--CCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccc Q lcl|Aclame:pro 160 HPYLDEEG--EFKLFRVPAEQGIPIWTD--KEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENS 235 (492) Q Consensus 160 ~v~~d~~g--~~~i~~~~p~~~~~i~d~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (492) .+...+.+ .+++..++|+.+-.-++. .....+..+|.+ +..+.. +-|++.....-. ... T Consensus 158 ~~~~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~--d~~Gr~--------~aY~i~~~hPgd-------~~~ 220 (505) T protein:vir:96 158 REHRGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIEL--DAWERP--------VAYHLLVNHPGD-------NSY 220 (505) T ss_pred EEeecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEE--CCCCce--------EEEEEeecCCCc-------ccc Confidence 88665543 268999999887433322 123346667764 222222 222222111000 000 Q ss_pred cccceeccCCccc---eEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcc-------c Q lcl|Aclame:pro 236 KTHFSTGSWGKIP---FIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQ-------E 300 (492) Q Consensus 236 ~~~~~~~~~g~iP---vv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~-------~ 300 (492) ........+.+|| |+++.. -..|.|.|.+++..+..++.............+.-..+++..... . T Consensus 221 ~~~~~~~~~~rvpa~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~ 300 (505) T protein:vir:96 221 CYHYAGQTYERVPADEIIHTFVPWRPHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDD 300 (505) T ss_pred ccccccccccccCHhHhhhhhcccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCccccc Confidence 0001112234444 233332 236899999999999888887766555555555544455542211 1 Q ss_pred chhhHHhhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 301 LPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKAD 380 (492) Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~ 380 (492) .......+..+.+..+..|.++++.+++.+...+..+...+.+.|..-.++|-......-++.|-.|.+..+........ T Consensus 301 ~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~ 380 (505) T protein:vir:96 301 QGEIVEEVEAGTYQLLPYGIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYK 380 (505) T ss_pred cCccccccCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHH Confidence 11112234455566678888999999888888999999999888888777763322211123444467777777777777 Q ss_pred HHHHHHHHHHHH-HHHHHHHH--h-c-cC--C--cceeeeEEeCCCC--CcCHHHHHHHHHHH--hccCChHHHHHhCCC Q lcl|Aclame:pro 381 KLARKAKVAIQE-LLWFVFEH--F-D-IK--G--EHKDVDISFNYNK--VANTELQVQTAQQS--MGIVSHETVLENHPF 447 (492) Q Consensus 381 ~~~~~~~~~l~~-~~~li~~~--~-~-~~--~--~~~~i~i~f~~~~--p~d~~e~~~~~~k~--~g~vs~et~l~~l~~ 447 (492) ..+..|...+-+ +++..+.. + | ++ . ...-..+.|..+. -.|....+++.... .|+.|.+..+...| T Consensus 381 ~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G- 459 (505) T protein:vir:96 381 LLQFFVVTELLERVAGNLISMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAG- 459 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcC- Confidence 776666554333 44433322 1 1 11 1 1112467784442 25888888887665 58999999999886 Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccccCC--CCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 448 VEDLQAELERIEQEQTEYNKQLPNLDDG--GADSAQQQERSNNKESE 492 (492) Q Consensus 448 v~D~~~E~~ri~~E~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e 492 (492) .|+++.+++|.+|.+...+.=-....+ .......+++++.+.+| T Consensus 460 -~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 460 -DDPEDVFDEIAWEEQLMRDKGVNPTPPEQESKDATTDEEDDSASDD 505 (505) T ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 489999999998876543221111111 11111111111112222 No 105 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.43 E-value=1.7e-11 Score=79.61 Aligned_cols=431 Identities=10% Similarity=-0.018 Sum_probs=216.9 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cccccccccccccc--------cccccc-cc Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDI-VKEPKPVDATGAVD--------PLKPDD-RM 98 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i-~~~~~~~~~~~~~~--------~~~~~~-ri 98 (492) |..||. ++.-+-....-++.+-.....-|+|-..- ...-.......... ..++.. -. T Consensus 1 Mn~iDr-------------~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~r 67 (548) T protein:vir:95 1 MNLIDR-------------LLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQPLGADTSLQKSAVSMREQCRKLDE 67 (548) T ss_pred CchHHh-------------HhhhcchHHHHHHHHhHHHhccccccCccccccccCCCCChHHHHHHHHHHHHHHHHHHHh Confidence 222222 22222222211222222222335553210 00000000000000 000000 01 Q ss_pred ccchHHHHHHHHHHhhhcC-CeeecC----Cch--------hHHHHHHHHHh-------ccHHHHHHHHHHHHHhcCeEE Q lcl|Aclame:pro 99 ITNFHANLVDQKVSYIVGK-PIAFKH----TDD--------EVVKRIDEVLG-------NRFDDKLHSVLTGASNKGIEW 158 (492) Q Consensus 99 ~~n~~~~ivd~~~~~l~g~-~~~~~~----~d~--------~~~~~l~~~~~-------n~~~~~~~~~~~~~~~~G~~~ 158 (492) -++|++-+|+..+..++|. ++.+++ .++ .....|+.|-. .+|...+..+++..+..|.+| T Consensus 68 Nn~~a~~av~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f 147 (548) T protein:vir:95 68 DHDLVTGLLDRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGL 147 (548) T ss_pred cChHHHHHHHHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceE Confidence 3589999999999999983 444432 222 22334555543 246777777889999999999 Q ss_pred EEEEeCCCC--------ceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEec--ceeeecc Q lcl|Aclame:pro 159 LHPYLDEEG--------EFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYEN--GSLIPDY 228 (492) Q Consensus 159 ~~v~~d~~g--------~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 228 (492) +....++.+ .+++..++|+.+-.-++. ..+.+..+|.+ +..+..+ -|++... +..... T Consensus 148 ~~~~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~-~~~~i~~GIE~--D~~Grp~--------aY~i~~~hPgd~~~~- 215 (548) T protein:vir:95 148 AQKLMGRVPNYTFATSVPFALELLEPDYLPFSYNN-LSKGIVQGIER--DTWRRKR--------AYHLLKDHPGNLQTL- 215 (548) T ss_pred EEeeecccccccCCcccceEEEEechhhcCCCCCC-CCCceeeeeEE--CCCCceE--------EEEEeecCCCccccc- Confidence 888765432 148899999887332332 23456666654 2222222 2222111 110000 Q ss_pred cccccc--ccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcc------- Q lcl|Aclame:pro 229 SNNLEN--SKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQ------- 299 (492) Q Consensus 229 ~~~~~~--~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~------- 299 (492) .....+ .......|.|.. ..+.-..|.|.|.+++..+..++....-........+.-..+++....+ T Consensus 216 ~~~~~~~rvpA~~VlHif~~----~r~gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~~~~~~ 291 (548) T protein:vir:95 216 GGSLAVKRVEAERIIHIAYR----KRIGQNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSYTVEPG 291 (548) T ss_pred ccccceeeechhHheecccc----cCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccCCCC Confidence 000000 001112222210 0122346899999998888888877655555555444444444432111 Q ss_pred -cchhhHHhhhhccce-ecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc-ccccchhHHHHHHHHHHHH Q lcl|Aclame:pro 300 -ELPEFKRLLRYYGAI-KVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD-KFGSAPSGVALEFLYTNLN 376 (492) Q Consensus 300 -~~~~~~~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~-~~~~~~Sg~Al~~~~~~l~ 376 (492) ........+..+.++ .+..|.++++.+++.+...+..+...+.+.|..-.++|--... .++ .|-.+.+..+.... T Consensus 292 ~~~~~~~~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s--~nYSS~R~~l~e~~ 369 (548) T protein:vir:95 292 KDRKNRTIPIAPGMVFDDLEPGEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYD--GTYSAQRQELVEGW 369 (548) T ss_pred cccccccccccCCccccccCCCceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccc--hhHHHHHHHHHHHH Confidence 000111123334334 3677889999988888889999999998888887777732221 222 25557777777777 Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHH--Hhc--c--CC---cceeeeEEeCCC-C-CcCHHHHHHHHHHH--hccCChHHHH Q lcl|Aclame:pro 377 LKADKLARKAKVAIQE-LLWFVFE--HFD--I--KG---EHKDVDISFNYN-K-VANTELQVQTAQQS--MGIVSHETVL 442 (492) Q Consensus 377 ~k~~~~~~~~~~~l~~-~~~li~~--~~~--~--~~---~~~~i~i~f~~~-~-p~d~~e~~~~~~k~--~g~vs~et~l 442 (492) ......+..|...+-+ +++..+. ++. + +. ....+.+.|..+ . -.|....+++.... .|+.|.+..+ T Consensus 370 r~~~~~q~~~i~~~~~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~ 449 (548) T protein:vir:95 370 LGYDLLQHEFIDYWCRPVYRSWLQMYLLARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVA 449 (548) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHH Confidence 7776666666544433 3433332 221 1 11 122357888443 2 36888888887765 5899999999 Q ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHhhccccCC--------CCCCCCcCC--C-------CCCCCCC Q lcl|Aclame:pro 443 ENHPFVEDLQAELERIEQEQTEYNKQLPNLDDG--------GADSAQQQE--R-------SNNKESE 492 (492) Q Consensus 443 ~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~--------~~~~~~~~~--~-------~~~~~~e 492 (492) ...+ .|+++.++++.+|.+...+.=-.+... +.++.++++ . ++++..| T Consensus 450 a~~G--~D~~ev~~q~a~E~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (548) T protein:vir:95 450 RARG--RDPRELKKSRETEIKANRAAGLVFSSDAYHQLVKSGMDPVEAVQKVYLGVGKMLTADEARE 514 (548) T ss_pred HHhC--CCHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccCCCCchhhhccccccccccchhHH Confidence 8877 489999999998876543221111111 111111110 0 1111111 No 106 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.42 E-value=2.3e-11 Score=78.93 Aligned_cols=431 Identities=11% Similarity=0.013 Sum_probs=220.1 Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-----ccccccc------cccccccccc-ccccchHHHHH Q lcl|Aclame:pro 40 NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE-----PKPVDAT------GAVDPLKPDD-RMITNFHANLV 107 (492) Q Consensus 40 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~-----~~~~~~~------~~~~~~~~~~-ri~~n~~~~iv 107 (492) .+.-... .+.. ..+.........||.|-.....+ +...... ......++.. -..++|++-+| T Consensus 1 ~~~p~~~-~~~~-----~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av 74 (533) T protein:vir:34 1 MKTPTIP-TLLG-----PDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANAI 74 (533) T ss_pred CCCchhh-hhhc-----ccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 1100111 1111 01122223446677653210000 0000000 0000011100 01368999999 Q ss_pred HHHHHhhhcCCeeecCC------------chh----HHHHHHHHHhc-----------cHHHHHHHHHHHHHhcCeEEEE Q lcl|Aclame:pro 108 DQKVSYIVGKPIAFKHT------------DDE----VVKRIDEVLGN-----------RFDDKLHSVLTGASNKGIEWLH 160 (492) Q Consensus 108 d~~~~~l~g~~~~~~~~------------d~~----~~~~l~~~~~n-----------~~~~~~~~~~~~~~~~G~~~~~ 160 (492) +..+.+++|.+++..+. +++ +...|..|..+ +|...+..+++..+..|.+|+. T Consensus 75 ~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~ 154 (533) T protein:vir:34 75 QLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQ 154 (533) T ss_pred HHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEE Confidence 99999999999988652 122 33344445321 4566677778899999999999 Q ss_pred EEeCCCC----ceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccccccccc Q lcl|Aclame:pro 161 PYLDEEG----EFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSK 236 (492) Q Consensus 161 v~~d~~g----~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (492) ...++.+ .+++..++|+.+-.-++......+..+|.+- +.+.. +-|++....... ... ..+. T Consensus 155 ~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d--~~Gr~--------~aY~i~~~~~~~-~~~---~~~~ 220 (533) T protein:vir:34 155 ATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQIN--DSGAA--------LGYYVSEDGYPG-WMP---QKWT 220 (533) T ss_pred eeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEEC--CCCCe--------EEEEEeecCCCC-ccc---cccc Confidence 8766543 3688999998886545444455677777652 22222 222222111000 000 0000 Q ss_pred ccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCc------------- Q lcl|Aclame:pro 237 THFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDD------------- 298 (492) Q Consensus 237 ~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~------------- 298 (492) ........+.-=|+++.. -..|.|+|.+++..+..++....-........+.-..+++...+ T Consensus 221 ~~~~~~~v~a~~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~ 300 (533) T protein:vir:34 221 WIPRELPGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANS 300 (533) T ss_pred eeeeeeccChhHeeeeccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCc Confidence 000000111111344432 34689999998888888777654444444433333333332110 Q ss_pred cc-chhhH--------------HhhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccch Q lcl|Aclame:pro 299 QE-LPEFK--------------RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAP 363 (492) Q Consensus 299 ~~-~~~~~--------------~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~ 363 (492) +. .+.+. ..+..+.+..+..|.++++.++..+...+..+...+.+.|..-.++|-..+...-++. T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~ 380 (533) T protein:vir:34 301 QEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQM 380 (533) T ss_pred ccccccccccchhhhhccCcceeeccCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccc Confidence 00 00000 0133455566778889999998888889999999998888777776633222111233 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHhc--c--CC----cc-----eeeeEEeCCC--CCcCHHHH Q lcl|Aclame:pro 364 SGVALEFLYTNLNLKADKLARKAKVAIQE-LLWFVF--EHFD--I--KG----EH-----KDVDISFNYN--KVANTELQ 425 (492) Q Consensus 364 Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~-~~~li~--~~~~--~--~~----~~-----~~i~i~f~~~--~p~d~~e~ 425 (492) |-.+.+..+..........+..|...+-+ +++..+ .++. + +. ++ ....+.|..+ .-.|.... T Consensus 381 nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke 460 (533) T protein:vir:34 381 SYSTARASANESWAYFMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKE 460 (533) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHH Confidence 44467777666766666666666554322 222222 1221 1 11 11 1235777444 33578888 Q ss_pred HHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHh-hccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 426 VQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQ-LPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 426 ~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +++.... .|+.|.+..+...| .|+++.++++.+|.+...+. +....+..........+...++++ T Consensus 461 ~~a~~~~i~~G~~s~~~~~a~~G--~D~~ev~~q~a~e~~~~~~~gl~~~~~~~~~~~s~~~~~~~~~~~ 528 (533) T protein:vir:34 461 VQEAVMLIEAGLSTYEKECAKRG--DDYQEIFAQQVRETMERRAAGLKPPAWAAAAFESGLRQSTEEEKS 528 (533) T ss_pred HHHHHHHHHcCCCCHHHHHHHcC--CCHHHHHHHHHHHHHHHHhcCCCCCCCCCcCccCCCCCCCCCCcc Confidence 8877765 58999999999887 48999999999887654432 111111111111111111111111 No 107 >protein:vir:172 Length: 708 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112077;genbank:gi:13559867;genbank:GeneID:920970 Probab=99.39 E-value=3.4e-11 Score=77.98 Aligned_cols=449 Identities=10% Similarity=0.032 Sum_probs=193.6 Q ss_pred hcCCChhhHHHHHHHH---HHHHHHHHHHHHHH--HHHhcCCCccccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 37 RTNNKPETLEEMIVRY---IKQHLEKLPEISIG--QEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 37 ~~~~~~~~~~~~l~~~---i~~~~~~~~~~~~~--~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~ 111 (492) +...+.+.+.++..++ +......+.+...- ..||.|+| +.............-..+| .+.+|..+.+|+..+ T Consensus 1 ma~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~d~~f~~y~G~Q-w~~~~~~~l~~~~q~~~rP--~~~~N~i~~~i~~v~ 77 (708) T protein:vir:17 1 MAETLEKKHERIMLRFDRAYSPQQEVREKCIEATRFARVPGGQ-WEGATAAGTKLDEQFEKYP--KFEINKVATELNRII 77 (708) T ss_pred CchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccCCCC-CCHHHHHHHHhhhhhcCCC--ceEEcchHHHHHHHH Confidence 2222222233333332 22222333333222 36899975 2111111111000011122 367899999999999 Q ss_pred HhhhcCCeee--cCC----chhHHHHHH----HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeC---C------CCceEE Q lcl|Aclame:pro 112 SYIVGKPIAF--KHT----DDEVVKRID----EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLD---E------EGEFKL 171 (492) Q Consensus 112 ~~l~g~~~~~--~~~----d~~~~~~l~----~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d---~------~g~~~i 171 (492) |+---+.+.+ .+. +.+..+.++ .+.+ ++.+.....+..+++++|.||+-+..| + +.++.+ T Consensus 78 g~e~~nr~d~~v~p~~~~~d~~~Ae~l~~l~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~~~~d~~~e~d~~~~~~~i~i 157 (708) T protein:vir:17 78 AEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDDRQRIAI 157 (708) T ss_pred hhHhhCCcceEEecCCCcchHHHHHHHHHHHHHHHHhcCchhHHhHHHHHhhhcccceeeeeecccccCCCCCCccccce Confidence 9987666544 332 233334443 2332 678888899999999999999877442 2 123444 Q ss_pred EEE--cccceEEEecCCCCC-ce---E-EEEEeeeec-------------------------------cceeEEEEecce Q lcl|Aclame:pro 172 FRV--PAEQGIPIWTDKEHE-EL---E-AFIRMYKLE-------------------------------NETKVEYWDKVT 213 (492) Q Consensus 172 ~~~--~p~~~~~i~d~~~~~-~~---~-~~i~~~~~~-------------------------------~~~~~~~~~~~~ 213 (492) ..+ ++.+++ ||+.... .+ . ++++.|... .--..++|.... T Consensus 158 ~~~~~~~~~v~--~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~~~~~~~d~vrv~e~~~r~~ 235 (708) T protein:vir:17 158 EPIYDPSRSVW--FDPDAKKYDKSDALWAFCMYSLSPEKYEAEYGKKPPASLDVTSMTSWEYDWFDADVIYIAKYYEVRK 235 (708) T ss_pred Eeeccchhhee--cCccccccChhhhhhhhhhccCCHHHHHHhCccccchhhhhhhhccccccccCCCeEEEEEEEEEee Confidence 333 334554 5543211 10 0 111111100 000111221111 Q ss_pred E--EEEEEe---cceeeeccc--------------------------------cccccccccceeccCCccceEeecCcc Q lcl|Aclame:pro 214 V--NYYVYE---NGSLIPDYS--------------------------------NNLENSKTHFSTGSWGKIPFIPFKNND 256 (492) Q Consensus 214 ~--~~~~~~---~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~g~iPvv~~~nn~ 256 (492) . .++... ++.+..... ..+........+-+++.+|+|+|.-.+ T Consensus 236 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~l~~~~~~p~~~fP~vP~~g~r 315 (708) T protein:vir:17 236 ESVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFQEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEHIPLIPVYGKR 315 (708) T ss_pred eeeEEEEEecCccCceeeeCccchhhHHHHHHhcccccceeeeeeEEEEEEEeecccccccCCCCCCCCccceEEEeccc Confidence 0 111110 011100000 000001112344556778888874321 Q ss_pred ---CC----CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec-CCcccchhhHHhhhh-----------ccceecC Q lcl|Aclame:pro 257 ---LE----ISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN-YDDQELPEFKRLLRY-----------YGAIKVS 317 (492) Q Consensus 257 ---~~----~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~~-----------~~~~~~~ 317 (492) .| .|.+.++++.++.+|...|.+...+...+....++.. ....-...+...... ..+-.+. T Consensus 316 ~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 395 (708) T protein:vir:17 316 WFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAFLPLREVRDKYGNII 395 (708) T ss_pred ccccCCCcccchhhhchhHHHHHHHHHHHHHHHHHhcCCcceeechhhhhhhHHhhhhcccchhhhhhhhccCCcccccc Confidence 22 4778899999999999999999888766655444321 111000011110000 0000111 Q ss_pred CCCcc-eeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 318 DNGGV-DTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWF 396 (492) Q Consensus 318 ~~~d~-~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~l 396 (492) .++.. .....+.-..++...++.....|-..+++.+.+.+. ++|.||+|+...-.............+..+.++..++ T Consensus 396 ~~a~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGi~d~~~G~-~sn~SG~Ai~~rq~qg~~~~~~~~Dnl~~~~~~~g~~ 474 (708) T protein:vir:17 396 AGATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQM-PSNIAQETVNNLMNRADMASFIYLDNMAKSLKRAGEV 474 (708) T ss_pred cccCCcccCCCccccHHHHHHHHHHHHHHHHhcCCChHHccC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 11111 112222223566777888888888888887777765 4578999999876666666666666666666666555 Q ss_pred HHHHh----ccC------C-c----c------------------eee-----eEEe--CCCCCcCHHHHHHHHHHHhccC Q lcl|Aclame:pro 397 VFEHF----DIK------G-E----H------------------KDV-----DISF--NYNKVANTELQVQTAQQSMGIV 436 (492) Q Consensus 397 i~~~~----~~~------~-~----~------------------~~i-----~i~f--~~~~p~d~~e~~~~~~k~~g~v 436 (492) ++.++ ... + + + .++ +|.- .+..+.-..+..+.++.+.+.+ T Consensus 475 lL~lI~~~y~~~R~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~~Dv~v~~~p~~~t~r~~~~~~l~qll~~~ 554 (708) T protein:vir:17 475 WLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRDATVSVLTNVLSSM 554 (708) T ss_pred HHHHHHHHcCCCcEEEEecCCCCcceeeecceeccCCCccceeeccceeeeeeEEEecccCchhHHHHHHHHHHHHHHhc Confidence 55443 110 0 0 0 011 1111 2222322333444555544333 Q ss_pred ChH---H------HHHhCCCCCCHHHHHHHHHHHHHHHHHhhcccc----------------------CCCCCCCCcCCC Q lcl|Aclame:pro 437 SHE---T------VLENHPFVEDLQAELERIEQEQTEYNKQLPNLD----------------------DGGADSAQQQER 485 (492) Q Consensus 437 s~e---t------~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 485 (492) +.. + +++.++ ....++-.++|++.........+... .........+.+ T Consensus 555 ~~~~~~~~~~~~l~l~~~D-~p~~~ei~e~ir~~~~~~~~~~~~~~e~~q~~~q~qq~~q~q~~~~~~eaqa~~~~~qAe 633 (708) T protein:vir:17 555 LPADPMRPAIQGIILDNID-GEGLDDFKEYNRNQLLISGIAKPRNEKEQQIVQQAQMAAQSQPNPEMVLAQAQMVAAQAE 633 (708) T ss_pred CCccchhHHHHHHHHHhcC-CCChHHHHHHHHHHhhccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 221 1 223322 23334444444432211000000000 000000000000 Q ss_pred CCCCCCC Q lcl|Aclame:pro 486 SNNKESE 492 (492) Q Consensus 486 ~~~~~~e 492 (492) .....++ T Consensus 634 ~~ka~ae 640 (708) T protein:vir:17 634 AQKATNE 640 (708) T ss_pred HHHHHHH Confidence 0000000 No 108 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.38 E-value=2.9e-11 Score=78.35 Aligned_cols=428 Identities=8% Similarity=-0.036 Sum_probs=210.4 Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-c--ccccc-cc----cccccccccc-ccccch Q lcl|Aclame:pro 32 FDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVK-E--PKPVD-AT----GAVDPLKPDD-RMITNF 102 (492) Q Consensus 32 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~-~--~~~~~-~~----~~~~~~~~~~-ri~~n~ 102 (492) |+-+...-.-+. ... +. .....-|+|-..--. + +.... .. ......++.. -..++| T Consensus 1 m~~~~~~~~a~~--~~~----------~~---~~~~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~ 65 (495) T protein:vir:10 1 MNMTPSGYQSLA--SGL----------LV---PVGASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPW 65 (495) T ss_pred CCcccccccccc--hhh----------hh---HHHhhhhhccccCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChH Confidence 111110000000 000 00 111122444221100 0 00000 00 0000001100 013589 Q ss_pred HHHHHHHHHHhhhcCCeeecC--CchhHHH----HHHHHHhc-------cHHHHHHHHHHHHHhcCeEEEEEEeCC--CC Q lcl|Aclame:pro 103 HANLVDQKVSYIVGKPIAFKH--TDDEVVK----RIDEVLGN-------RFDDKLHSVLTGASNKGIEWLHPYLDE--EG 167 (492) Q Consensus 103 ~~~ivd~~~~~l~g~~~~~~~--~d~~~~~----~l~~~~~n-------~~~~~~~~~~~~~~~~G~~~~~v~~d~--~g 167 (492) ++-+|+..+.+++|.+++.+. ++++..+ .|+.|-.+ +|...+..+++..+..|.+|+.+...+ +| T Consensus 66 a~~av~~~~~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g 145 (495) T protein:vir:10 66 ATNAVATWVAAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEG 145 (495) T ss_pred HHHHHHHHHHhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCC Confidence 999999999999999988865 4444444 44445432 566777778899999999998775543 33 Q ss_pred ---ceEEEEEcccceEEEec---CCCCCceEEEEEeeeeccceeEEEEecceEEEEEEe--cceeeec-ccccccccccc Q lcl|Aclame:pro 168 ---EFKLFRVPAEQGIPIWT---DKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYE--NGSLIPD-YSNNLENSKTH 238 (492) Q Consensus 168 ---~~~i~~~~p~~~~~i~d---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~ 238 (492) .+++..++|+.+---++ .+....+..+|.+-. .+..+ -|++.. .+..... ........... T Consensus 146 ~~~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~--~Gr~v--------aY~i~~~hpgd~~~~~~~~~~~rvpA~ 215 (495) T protein:vir:10 146 LSVPLQLQIIEPDMLASDIPDETLPSGGYVKGGIRFSN--GGKRK--------AYCFYRNHPAESSLIGDPVDTVWIKAE 215 (495) T ss_pred CccceEEEEechhhcCCCCCCCCCCCCCEEEeceEECC--CCceE--------EEEEeecCCCcccccccccceeeechh Confidence 36899999999842222 123345677776522 22222 222211 1110000 00000001111 Q ss_pred ceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCc-ccc------------hhhH Q lcl|Aclame:pro 239 FSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDD-QEL------------PEFK 305 (492) Q Consensus 239 ~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~-~~~------------~~~~ 305 (492) ...|.| |. .+....|.|.+..++.| ..++....-........+.-..+++.... +.. .... T Consensus 216 ~vlH~f---~~--r~gQ~RGis~la~i~~l-~~l~~y~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (495) T protein:vir:10 216 HVLHVT---VL--TVRSDAGAPWFQLLLRL-NELDQYEDAELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSKGGKRI 289 (495) T ss_pred heEecc---cc--CCCcccCcchhHHHHHH-HHhhHHHHHHHHHHHHhhhheeeeecCCCccccccccCccccccCcccc Confidence 223333 11 13344688888877764 44444443333333333333333432111 100 0011 Q ss_pred HhhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 306 RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLAR- 384 (492) Q Consensus 306 ~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~- 384 (492) ..+..+.+..+..|.++++.++..+...+..+...+.+.|..-.++|=-.....-++.|-.+++..+..........+. T Consensus 290 ~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~ 369 (495) T protein:vir:10 290 TGLNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHH 369 (495) T ss_pred eecCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH Confidence 1234445666788889999988888888999999888888777766622221111233444667766666666655443 Q ss_pred HHHHH-HHHHHHHHHH--Hh-c-cC-Ccc-----eeeeEEeCCCC--CcCHHHHHHHHHHH--hccCChHHHHHhCCCCC Q lcl|Aclame:pro 385 KAKVA-IQELLWFVFE--HF-D-IK-GEH-----KDVDISFNYNK--VANTELQVQTAQQS--MGIVSHETVLENHPFVE 449 (492) Q Consensus 385 ~~~~~-l~~~~~li~~--~~-~-~~-~~~-----~~i~i~f~~~~--p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~ 449 (492) .+-.. ++-+++..+. ++ | +. .++ ....+.|..+. -.|....+++.... .|+.|.+..+...+ . T Consensus 370 ~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G--~ 447 (495) T protein:vir:10 370 MIIHQFCRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERG--Y 447 (495) T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcC--C Confidence 34433 3334443332 22 1 11 111 12456774443 35888888887765 58999999999887 4 Q ss_pred CHHHHHHHHHHHHHHHHHhhccc-----cCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 450 DLQAELERIEQEQTEYNKQLPNL-----DDGGADSAQQQERSNNKESE 492 (492) Q Consensus 450 D~~~E~~ri~~E~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~e 492 (492) |+++.+++|.+|.+...+.=-.+ ...+.....+..+.+++++| T Consensus 448 D~~~v~~q~a~e~~~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~~~e 495 (495) T protein:vir:10 448 DMEELFDMISDANQLIDEYDLRLDSDPRYVNGSGAEQKSVMEAALNNE 495 (495) T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCccCCCCCCCCCCCCCC Confidence 89999999998876543221111 11111122223333333333 No 109 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.37 E-value=9.8e-12 Score=80.94 Aligned_cols=440 Identities=10% Similarity=-0.008 Sum_probs=206.7 Q ss_pred ChhhhH--HHHHHHHHhcCCceeccCCCcHH------HHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHH-HHHhc Q lcl|Aclame:pro 1 MQFIQL--ISQVAQALIKGGNILYPSQPTQT------EIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIG-QEYYE 71 (492) Q Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-~~YY~ 71 (492) |-|.-. -+.+|.+=+.+.|.+-.+.+... +-....+..++.+.......... .. .+-..+ ..||. T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~----~~--~~~~~~~~~~~~ 98 (537) T protein:vir:10 25 VGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMMPKVDGSHPDMAMDGLDVEGGTFSAYA----NP--NLSEGLVLWYAQ 98 (537) T ss_pred cCCCcccchhhHHHHHHhhhhccCCCCCccCcccccccccccchhccccccchhhhhhhc----cc--cccchhhhhccc Confidence 223211 11122222222222222211100 11111222222221111111100 00 000111 12222 Q ss_pred CCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCch-----hHHHHHH-HHHhccHHHHHH Q lcl|Aclame:pro 72 QRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD-----EVVKRID-EVLGNRFDDKLH 145 (492) Q Consensus 72 G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~-----~~~~~l~-~~~~n~~~~~~~ 145 (492) ... + .+ ...+-.+ .+.+++.+|+..+.-.+.+++.++++++ +..+.++ .+..-++...+. T Consensus 99 ~~~-~----~~--------~l~a~Y~-~~~l~r~iVd~~A~d~~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~ 164 (537) T protein:vir:10 99 QAF-I----GH--------QMCALIA-THWLVNKACSQMPRDAMRKGYKIISDDGNELDPKDAKFIDRYDRAFNIKKHAI 164 (537) T ss_pred cCC-c----cH--------HHHHHHH-hCchhhhhhhhhhHHhhcCCceeecCCcccccHHHHHHHHHHHHHhhHHHHHH Confidence 211 0 00 0000011 3588999999999999999999988643 2223333 333446778889 Q ss_pred HHHHHHHhcCeEEEEEEeCC-CCce----------------EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEE Q lcl|Aclame:pro 146 SVLTGASNKGIEWLHPYLDE-EGEF----------------KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEY 208 (492) Q Consensus 146 ~~~~~~~~~G~~~~~v~~d~-~g~~----------------~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~ 208 (492) ++.+.+..||.+++++..+. |+.. .+.+++|.++.|...+.....+. .-.+ T Consensus 165 ~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~~~~dp~------------sp~f 232 (537) T protein:vir:10 165 QFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQASSNPV------------SMHF 232 (537) T ss_pred HHHHhcccccceEEEEeecCcCCcccccccccccccccceeEEEEechhhcccccchhhhccCC------------cccc Confidence 99999999999998886542 2211 24455555554422110000000 0000 Q ss_pred EecceEEEEEEecceeeeccccccccccccceeccCC-ccceEee-cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 209 WDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWG-KIPFIPF-KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDS 286 (492) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~iPvv~~-~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~ 286 (492) +.+ ..|..... ..+.....|--| .+|-+.- .++-+|+|.++.+.+-+..++.+.-..+..+..+ T Consensus 233 g~P---~~y~v~g~-----------~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~ 298 (537) T protein:vir:10 233 YEP---TYWLINGK-----------KYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTK 298 (537) T ss_pred CCc---eeeeecCe-----------EecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 000 01111000 001111111000 0111111 1344699999999999999999998888888888 Q ss_pred CCceEEEecCCc-ccchhhHHh-------hhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCc-c Q lcl|Aclame:pro 287 NELTYVLKNYDD-QELPEFKRL-------LRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS-D 357 (492) Q Consensus 287 ~~~~l~~~g~~~-~~~~~~~~~-------~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~-~ 357 (492) ..+.+.+.|... .+.+.+... ....+++.++.+++ ++.....+...+...++...+.|...+++|-.-+ + T Consensus 299 ~~~v~k~~~~~~l~~~~~~~~r~~~~~~~r~n~g~~~id~e~e-~~e~~~~~lsgl~~~l~~~~~~iAa~~~IP~t~L~G 377 (537) T protein:vir:10 299 RQTVLKVDAAQVLANKQQFDETMSWWTATRDNYQVRVVDKDNE-DVVQIDTTLNDLDKVIMNQYQLVCAIARTPAPKMLG 377 (537) T ss_pred CCceeeechHHhhcCHHHHHHHHHHHHhhcCCcceeEecCCCc-eeEEEeccCCCHHHHHHHHHHHHHhhhCCCceeecc Confidence 888888776421 111112211 12234555555432 4544556777888999999999999999996532 2 Q ss_pred c--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHH----- Q lcl|Aclame:pro 358 K--FGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQ----- 430 (492) Q Consensus 358 ~--~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~----- 430 (492) . .|-+.||..-...|...+ +.++..+...+++++++++...... ..++.+.|++-...|..+.|+... T Consensus 378 ~sp~GlnatGe~D~~~yyd~I---~~~Qe~l~p~l~~l~~ll~~~~~~~--~~~~~i~f~pL~~~s~kEkAei~~~~a~a 452 (537) T protein:vir:10 378 TVPTGFNSTGDYEEASYHEEC---ESTQDDMRPLIDRHHQLVCRSHLRK--RIRVKVEFPPMDAPKESERADTFLKKMQA 452 (537) T ss_pred CCccccccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCC--CcceEEEeCCCCCCCHHHHHHHHHHHHHH Confidence 1 133566776555544443 3444457899999999988655432 346889999999999999887543 Q ss_pred --HH--hccCChHHHHHhCCCCCCH-HHHH-HHHHHHHHHHH---HhhccccC--CCCCC--CCcCCCCCCCCCC Q lcl|Aclame:pro 431 --QS--MGIVSHETVLENHPFVEDL-QAEL-ERIEQEQTEYN---KQLPNLDD--GGADS--AQQQERSNNKESE 492 (492) Q Consensus 431 --k~--~g~vs~et~l~~l~~v~D~-~~E~-~ri~~E~~~~~---~~~~~~~~--~~~~~--~~~~~~~~~~~~e 492 (492) ++ .|+++.+.+.+.|..-.+. ...+ ..+..|..+.. ........ ..++. ..+....+++..+ T Consensus 453 ~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (537) T protein:vir:10 453 AKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGKPVRIIEDQPAPSEMFGATSSGESAND 527 (537) T ss_pred HHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhhcccCCccCCcCCCCCCCCCccccCCCCccccccCC Confidence 33 3789988877765321000 0000 00000111000 00000000 00000 0000001111111 No 110 >protein:vir:3139 Length: 599 # NCBI annotation: hypothetical protein # Family: family:all:1548 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640321;genbank:gi:21234402;genbank:GeneID:956054 Probab=99.36 E-value=9.9e-12 Score=80.92 Aligned_cols=442 Identities=10% Similarity=0.026 Sum_probs=231.0 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-H---HHHHHHHHHHhcCCCccccccccccccccccccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-K---LPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMI 99 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~---~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~ 99 (492) ++-..+. ++.+.-.-+++-.....|..++.++.. | ...-+++++|-..-. .| .+.. ..-++| |++. T Consensus 1 m~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~e~~~yi~~~~---tr--~t~~--~~~~w~--~s~t 70 (599) T protein:vir:31 1 MSTDIKT-LQKMLEGRDDDRAFIDELVVLFTNMENARAQKDREDKELMDYIDATD---TR--KTSN--SKLPFK--NSTT 70 (599) T ss_pred CccchHH-HHHHhhccCchHHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhhc---cc--cccc--CCCCcc--cccc Confidence 5543343 444444344444444445555544432 2 223355666633211 11 1111 112232 4566 Q ss_pred cchHHHHHHHHHHhhhcCC------eee---cCC--chhHHHHHHHHHhc-----cHHHHHHHHHHHHHhcCeEEEEEEe Q lcl|Aclame:pro 100 TNFHANLVDQKVSYIVGKP------IAF---KHT--DDEVVKRIDEVLGN-----RFDDKLHSVLTGASNKGIEWLHPYL 163 (492) Q Consensus 100 ~n~~~~ivd~~~~~l~g~~------~~~---~~~--d~~~~~~l~~~~~n-----~~~~~~~~~~~~~~~~G~~~~~v~~ 163 (492) +|-..-+++.+..++++-- +.+ ..+ ..+..+.++.+.++ +|......+..+.+.+|-|+..+.. T Consensus 71 ~~k~~~~~~~l~a~~~~~~fp~~~w~d~~~~~~~~~~~~~~~~i~~yi~~Kl~e~~~~~~~~~~v~d~i~~G~~vat~~~ 150 (599) T protein:vir:31 71 INKLAHLHLMITTSYMEHLLPNRNWVDFVGFDNDSVNAEKREIARSYVRGKVEASNLEGVIERMVDDFAVRGFCVAHTRH 150 (599) T ss_pred hHHHHHHHHHHHHHHHhhhcCCccceEeeecCCchhHHHHHHHHHHHhhhhhhhcchHHHHHHHHhhhcccCceeEeeeE Confidence 6777778999888886532 222 222 23345555555443 6777888889999999998877642 Q ss_pred C------CC-------CceEEEEEcccceEEEecCCCCCceEEEEEeeeeccc--------e------------------ Q lcl|Aclame:pro 164 D------EE-------GEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENE--------T------------------ 204 (492) Q Consensus 164 d------~~-------g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~--------~------------------ 204 (492) - +| .+|++..++|..+|+=.+-+....--+++|.+.+... . T Consensus 151 er~~~~~~d~~v~~~~~~P~~ervsP~Di~~Dp~A~si~d~~fivRs~~Tk~~L~~l~~~~~~~~y~~d~~~~~~~~~~~ 230 (599) T protein:vir:31 151 VKRMTVTAENQVIKNYSGTVTERLSPSDVFWDVTADSLPKAAKCIRQLYTLGSLKREIEEGTFPLMSMEDFQKLREERRT 230 (599) T ss_pred EEcceeecccccccccccceEEeecccceeeCCCCCCCCcceeeeehhhhHHHHHHHhccCCccccchHHHHHHHhhccC Confidence 1 12 2478999999988763332222233333554332110 0 Q ss_pred -------------------------eEEEEecceEEEEEEecceeeecccccc----------c-cccccce--eccCCc Q lcl|Aclame:pro 205 -------------------------KVEYWDKVTVNYYVYENGSLIPDYSNNL----------E-NSKTHFS--TGSWGK 246 (492) Q Consensus 205 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~--~~~~g~ 246 (492) ..++|.+..+..+.+-+. ..+...+. + ....... +.+.|. T Consensus 231 ~~~~~~d~~~~~~g~D~~~~d~~~~~~eY~~~~~VevLeywGd--~ydee~d~~~~~~ViTi~g~~~liR~e~np~~~g~ 308 (599) T protein:vir:31 231 IREALADGYNGRRKFDSLHKKGYGSMMNYINEGVVEVLTFMGD--FYDEENDELWNNYEITVIDRKIIGRKQSKDTWDGS 308 (599) T ss_pred CCccccchhhhhhhccccccccccchhhhcccchhhhhhhhhh--hhcccCCccccceEEEEecCcEEeecccCCCCCCC Confidence 000111111111111000 00000000 0 0111222 344566 Q ss_pred cceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCc Q lcl|Aclame:pro 247 IPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGG 321 (492) Q Consensus 247 iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 321 (492) .|++... .+.+|.|.+..+.++++.+|.+.-.+.+.+.-+-.|++...|.-....-++ ..+.++.+.+.|+ T Consensus 309 ~Pyvv~~~~P~~~~~yG~G~l~~~~gaQ~~lN~~~Ng~iD~~~~~l~p~l~~~~dl~~eD~~~----~P~~v~~~~d~~~ 384 (599) T protein:vir:31 309 QNLHIAVYEFQKDTLCPIGPLHRLTGMQYKLDKRENFREDLHDRFLHPSLKKVGDVREKGMRG----GPNHVFEVEETGD 384 (599) T ss_pred CCeEEEEeeeeccccCCCCCchhcchHHHHHHHHHHHhhhhhhhhhcccccccccccccCccC----CCCcceeecCCCc Confidence 8887654 345789999999999999999998999989999999888777522211111 2356788899999 Q ss_pred ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH Q lcl|Aclame:pro 322 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQE-LLWFVFE 399 (492) Q Consensus 322 ~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~-~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~-~~~li~~ 399 (492) +.++.++.+..+....+..+...+-..+++|..+.+.- .+...+..+..+..........+.+.|..++-+ +++.+++ T Consensus 385 vq~~~p~s~~~~a~~~is~~e~~mee~sGvp~~~~G~~~ag~~TA~~is~l~naa~~~~~~~vr~~e~~~lepll~~l~e 464 (599) T protein:vir:31 385 VQYMTPPAEVLQPDNQLSITLQLMEDLSGAPKESIGQRTAGEKTKFEVQLLDQGQNKVFRRKVKKFERELLTPVLNDYLE 464 (599) T ss_pred cccccCchhhhhHHHHHHHHHHHHHHhhccchhhcCCcccchhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH Confidence 99999998888888889999898999999998776533 245567777777777777778888888888644 6664444 Q ss_pred HhccCCc----------------ceee-------eEEeCCCCCcCHHHHHHHHHHHhc---------cC---ChHHHHHh Q lcl|Aclame:pro 400 HFDIKGE----------------HKDV-------DISFNYNKVANTELQVQTAQQSMG---------IV---SHETVLEN 444 (492) Q Consensus 400 ~~~~~~~----------------~~~i-------~i~f~~~~p~d~~e~~~~~~k~~g---------~v---s~et~l~~ 444 (492) +.-...+ +.+| .+.+-+.-..-.++..+.++++.+ +. +++..... T Consensus 465 ~~~~f~D~~~tiri~~~e~~~~~f~~i~redl~~~~~~v~~Ga~~v~ere~~~q~l~~il~~~~~q~~~P~~~~k~l~~~ 544 (599) T protein:vir:31 465 QGRNHLDASDTIKTFNSELGTATFLDITADDLNLNGQMVAQGATLFAEKANTLQNLNAILGGPLGAALAPHMSRTKLFNA 544 (599) T ss_pred HHHhhcccccceeeecccccceeeEEeehhhhhCCeeeeechhhHHHHHHHHHHHHHHHhcccCCCccchhhHHHHHHHH Confidence 3321111 1111 111222222334455555555432 22 23222111 Q ss_pred CCC--------C--CC-----HHHHHHHHHHHHHHH-HHhhc--cccCCCCCCCC Q lcl|Aclame:pro 445 HPF--------V--ED-----LQAELERIEQEQTEY-NKQLP--NLDDGGADSAQ 481 (492) Q Consensus 445 l~~--------v--~D-----~~~E~~ri~~E~~~~-~~~~~--~~~~~~~~~~~ 481 (492) +-+ + .. .+.+...++++-+.. -.++. ..++...+..+ T Consensus 545 l~~~~~l~~~~~~~~~va~~eqq~~~~m~Q~~lq~~~~~~~~~~~~~~~~~~~~~ 599 (599) T protein:vir:31 545 VEYLGDLDAYGIFTFGIGVQEDQQLARMAQKSTQQTEETALTQEEVGGPTTDTGQ 599 (599) T ss_pred HHHHHhccccccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCCCcccCC Confidence 111 1 11 122222222222111 11111 12222222222 No 111 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.34 E-value=2e-11 Score=79.20 Aligned_cols=441 Identities=9% Similarity=0.015 Sum_probs=200.7 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) ..+. --|+|+|..+.-+.|-.-. +..-.. .++....-.+..- ...-+....-+.-|++.-. .. T Consensus 12 ~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~------~~~~~a~~~g~~~~~~~~~-~~ 74 (532) T protein:vir:94 12 ITYA--TLQQAQRVDAKRATHTSLG------LATAHE--IDPTAYSPYERNA------AQNAMAMDYGLQTGRNGRN-AL 74 (532) T ss_pred eehh--hhhhHhhhhhhhhhhhhhh------hhhhhh--hcccccccccccc------cccccccccccCccccccc-cc Confidence 2222 2256666666555543111 000000 0000000000000 0000000000111110000 00 Q ss_pred ccc-cccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCch-----hHHHHHHH-HHhccHHHHHHHHHHHHHh Q lcl|Aclame:pro 81 KPV-DATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDD-----EVVKRIDE-VLGNRFDDKLHSVLTGASN 153 (492) Q Consensus 81 ~~~-~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~-----~~~~~l~~-~~~n~~~~~~~~~~~~~~~ 153 (492) .+. .........-+-.+ .+.+++.+|+..+.=++-+++.++++++ +....++. |..=++...+.++.+.+.. T Consensus 75 ~~~~~~~~~~~~l~a~Y~-~~~l~r~~Vd~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rl 153 (532) T protein:vir:94 75 SFVEATSWPGFPTLALLA-QLPEYRTMHETPADECVRAWGKITCSSKDELAADKATRITQKLEQYNVRTLVRTVVIHDQA 153 (532) T ss_pred ccccccccchHHHHHHHH-cCchhhhhhccchHHHhhCCceEeeCCccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhc Confidence 000 00000000000011 3577799999999999999999987432 22223332 2222677788899999999 Q ss_pred cCeEEEEEEeCCCCc--------------------eEEEEEcccceEEE-ecCCCCCceEEEEEeeeeccceeEEEEecc Q lcl|Aclame:pro 154 KGIEWLHPYLDEEGE--------------------FKLFRVPAEQGIPI-WTDKEHEELEAFIRMYKLENETKVEYWDKV 212 (492) Q Consensus 154 ~G~~~~~v~~d~~g~--------------------~~i~~~~p~~~~~i-~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 212 (492) ||.|++++-.+.+|. ..+.+++|.++.|- |+......+- ++.+ T Consensus 154 yG~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~---------------fg~P- 217 (532) T protein:vir:94 154 YGGAHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPS---------------FYKP- 217 (532) T ss_pred ccceEEEEEeccCCccccccccccccccccccceeeEEEeechheecccccccccccccc---------------cCCc- Confidence 999998876654331 02334444444332 1100000000 0000 Q ss_pred eEEEEEEecceeeeccccccccccccceeccC-CccceEee-cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 213 TVNYYVYENGSLIPDYSNNLENSKTHFSTGSW-GKIPFIPF-KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELT 290 (492) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~iPvv~~-~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~ 290 (492) .+|....+. ..+.....|-- ..+|-... .++-+|.|.++.+...+..++.+.-..+..+..+.... T Consensus 218 --~~y~v~~g~----------~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v 285 (532) T protein:vir:94 218 --DSWIATSGK----------KIHSSRIHTVVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQFSMTN 285 (532) T ss_pred --eeEEEccCe----------eeccceEEEecCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCce Confidence 011110000 01111111110 11222211 12346999999999999999999888887777777777 Q ss_pred EEEecCCc----ccchhhHHhh-------hhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCc-c- Q lcl|Aclame:pro 291 YVLKNYDD----QELPEFKRLL-------RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS-D- 357 (492) Q Consensus 291 l~~~g~~~----~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~-~- 357 (492) +.+ +... +....+...+ ...+++.++.+.+ +|-....+...+...++...+.|...+++|-.-+ + T Consensus 286 ~k~-~~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~e-~~e~~~~~lsgl~~~l~~~~~~iAaa~~IP~t~LfG~ 363 (532) T protein:vir:94 286 LAT-DMAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGTE-EIQQTNTPLSGLDSLQAQSQEQMAAVSHIPLVKLLGI 363 (532) T ss_pred eee-chHHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCCc-eeEEEecccCCHHHHHHHHHHHHHhHhCCCeeeeecC Confidence 664 3211 1112222111 1223445554322 3444446677788899999999999999986522 1 Q ss_pred cc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHH----- Q lcl|Aclame:pro 358 KF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQ----- 431 (492) Q Consensus 358 ~~-~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k----- 431 (492) .. |-|.+|+.-...|...+. ...+..+...+++++++++.......+ .++.+.|++-...+..|.|+...+ T Consensus 364 sp~GlnstGe~D~~~yyd~I~--s~Qe~~l~p~le~l~~~l~~s~~g~~~-~d~~~~f~pL~~~s~kEkAei~~~~a~a~ 440 (532) T protein:vir:94 364 TPNGLNASSDGEIRVWYDFIA--GYQATNLTPLMEWIIDLIQLSEYGQID-PGLAWEWSPLMELDDKELAEVRQLNASTD 440 (532) T ss_pred CcccccccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCC-CCceEEeCCCCCCCHHHHHHHHHHHHHHH Confidence 11 224566654444443333 234466788899999888743322222 358899999888889988775432 Q ss_pred --H--hccCChHHHHHhCCCCC------C--HHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 432 --S--MGIVSHETVLENHPFVE------D--LQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 432 --~--~g~vs~et~l~~l~~v~------D--~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) + .|++|.+.+.+.+..-. + ...+++....+..+.......-...+......+.++.+++.+ T Consensus 441 ~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 513 (532) T protein:vir:94 441 STLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATAPQTPNPQPDSEDDQTD 513 (532) T ss_pred HHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCCCCCCCCCC Confidence 2 37899888877664211 1 111221111111111111111111111111111112222222 No 112 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.33 E-value=3.7e-11 Score=77.79 Aligned_cols=382 Identities=10% Similarity=0.034 Sum_probs=185.4 Q ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhcc Q lcl|Aclame:pro 60 LPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNR 139 (492) Q Consensus 60 ~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~ 139 (492) ..+.+-+..-+.|-++--....+ ..........+-. -.+.+++.+|+..+.-++.+++.++++++. ......|..=+ T Consensus 1 ~~~~D~~~n~~~gg~~~~~~~~~-~~~~~~~~l~a~Y-~~~~l~~~~Vd~~aed~~r~g~~i~~~~~~-~~~~~~~~~l~ 77 (422) T protein:vir:10 1 MVKTDSYANIFLGGSDGSEIYGS-LQNQAPTILASLY-ADNALVRRIIDTIPETALAAGFHIDGIDDE-PAFWSRWDDLE 77 (422) T ss_pred CccchhhHHHHcCCCCCccccCc-ccccCHHHHHHHH-HhChhhHHHHhhhhHHHhcCCccccCCCHH-HHHHHHHHHhh Confidence 11111122222332211000000 0000000000001 146888999999999999999999987654 22334444446 Q ss_pred HHHHHHHHHHHHHhcCeEEEEEEeCCCC----------ce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEE Q lcl|Aclame:pro 140 FDDKLHSVLTGASNKGIEWLHPYLDEEG----------EF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEY 208 (492) Q Consensus 140 ~~~~~~~~~~~~~~~G~~~~~v~~d~~g----------~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~ 208 (492) +...+.++.+.+..||.|++++-..+.. .+ .+.+++|.++.|..-+.....+- + T Consensus 78 ~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~~---------------f 142 (422) T protein:vir:10 78 MTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNAR---------------F 142 (422) T ss_pred HHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCccccc---------------c Confidence 7888999999999999999988763221 11 23444444433311000000000 0 Q ss_pred EecceEEEEEEecceeeeccccccccccccceeccCC-ccce-EeecCccCCCCcHHH-HHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 209 WDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWG-KIPF-IPFKNNDLEISDIFM-YKTLIDAYNRRLSDLSNTFKD 285 (492) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~iPv-v~~~nn~~~~s~~~~-v~~liD~~~~~~s~~~~~~~~ 285 (492) +.+ ..|.+.... .......+.....+.-| .+|- ....++.+|.|.+.. +.+-+..++++.-..+..+.. T Consensus 143 g~P---~~y~v~~~~-----~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~ 214 (422) T protein:vir:10 143 GEP---LTYRITTNE-----SDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKR 214 (422) T ss_pred Ccc---eEEEEecCC-----CCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 000 111111100 00000011111111101 1121 223455678998986 678888899988888888888 Q ss_pred cCCceEEEecCC-----cccchhhHHh-------hhhccceecC-CCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 286 SNELTYVLKNYD-----DQELPEFKRL-------LRYYGAIKVS-DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAV 352 (492) Q Consensus 286 ~~~~~l~~~g~~-----~~~~~~~~~~-------~~~~~~~~~~-~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p 352 (492) +....+.+.|.. +......... ......+.+. ++.+ +-....+...+...++...+.|...+++| T Consensus 215 ~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~--~e~~~~~lsgl~~~~~~~~~~iaaa~~IP 292 (422) T protein:vir:10 215 KQQAVWKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEE--YSVLNSDIGGIDAFLDKKFDRIVALSGIH 292 (422) T ss_pred hccccccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcc--eEEEecccCChHHHHHHHHHHHHhhhCCC Confidence 888888777631 1111111111 1122233333 3333 44445667788999999999999999999 Q ss_pred CCCcc--cccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHH Q lcl|Aclame:pro 353 DFSSD--KFGS-APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTA 429 (492) Q Consensus 353 ~~~~~--~~~~-~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~ 429 (492) -.-+. +.+| |.||..-...|..... ...+..+...+++++++++. ..++.+.|++-...+..+.|+.. T Consensus 293 ~t~L~G~s~~Glnatgd~d~~~yyd~i~--~~Qe~~l~p~l~~l~~~i~~-------s~~~~~~f~pL~~~sekekaei~ 363 (422) T protein:vir:10 293 EIILKNKNVGGVSSSQNTALETFHKLVD--RKRNAELLPILEFLIPFIVN-------AEEWSVEFNPLAQESSKDKAEIL 363 (422) T ss_pred eeeeccCCcccccccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc-------cCCcEEEeCCCCCCCHHHHHHHH Confidence 65331 1122 3456654444443333 23346788889998888763 13678999999999999988876 Q ss_pred HHHh---------ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCC-cCCCCCCCCCC Q lcl|Aclame:pro 430 QQSM---------GIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQ-QQERSNNKESE 492 (492) Q Consensus 430 ~k~~---------g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e 492 (492) .+.+ |+++.+.+.+.| ... ...............+..+ +++..++...| T Consensus 364 ~~~a~a~~~~~~~g~i~~~e~r~~L-------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 422 (422) T protein:vir:10 364 EKNVNSIAALIAAGAMDIDEARDTL-------------RTI-APEVKINDGSVETEVTISETSNDPLEVPTDD 422 (422) T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHh-------------hhh-cccccCCCCCCccccchhhcCCCCCCCCCCC Confidence 5543 445544444333 111 0000000000000000000 01111111111 No 113 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.31 E-value=2.3e-12 Score=84.43 Aligned_cols=391 Identities=10% Similarity=0.063 Sum_probs=186.7 Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccc-ccccccccccccchHHHHHHHH Q lcl|Aclame:pro 32 FDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGA-VDPLKPDDRMITNFHANLVDQK 110 (492) Q Consensus 32 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~-~~~~~~~~ri~~n~~~~ivd~~ 110 (492) |-- +..+..+....-+-+.+.+.+.-. ..++........ ......-+ -.+.+++.+|+.. T Consensus 1 ~~~-----------------~m~~~~~~~~~~D~~~~~~~~~~g-~~~~~~~~~~~~~~~~l~~~Y-~~~~l~~~~Vd~~ 61 (435) T protein:vir:79 1 MGV-----------------FMSDKVKAITKEDGYNEIFGSKDG-TFRPNAFYMQRAAFKALSQFY-EEDGMARRIVDVI 61 (435) T ss_pred CCc-----------------ccccccccchhhcchhhhhccccc-ccccCcccCCcCCHHHHHHHH-hcCchhhhhhccc Confidence 100 111111111111112222222110 000000000000 00000001 1458889999999 Q ss_pred HHhhhcCCeeecCCchhHHHHHHH-HHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCC----------ce-EEEEEcccc Q lcl|Aclame:pro 111 VSYIVGKPIAFKHTDDEVVKRIDE-VLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEG----------EF-KLFRVPAEQ 178 (492) Q Consensus 111 ~~~l~g~~~~~~~~d~~~~~~l~~-~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g----------~~-~i~~~~p~~ 178 (492) +.-++.+++.++++++. +.++. |..=+....+.++.+.+..||.|++++-..+.. .+ .+.+++|.+ T Consensus 62 aed~~r~g~~i~g~~~~--~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~ 139 (435) T protein:vir:79 62 PEEMVTPGFKVDGVKNE--KSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQ 139 (435) T ss_pred hHHhhcCCceecCCChH--HHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhh Confidence 99999999999876533 23333 332367788999999999999998888653221 11 233444433 Q ss_pred eEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCc--cceE-eecCc Q lcl|Aclame:pro 179 GIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGK--IPFI-PFKNN 255 (492) Q Consensus 179 ~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--iPvv-~~~nn 255 (492) +.|-.-+.....+ .++.+ ..|.+.... .......+.....+ |.. +|-. ...++ T Consensus 140 i~~~~~~~dp~sp---------------~fg~P---~~y~v~~~~-----~~~~~~iH~SRli~-~~g~~~p~~~~~~~~ 195 (435) T protein:vir:79 140 ITIHERETNARSV---------------RYGEP---KLYKISPGG-----DIPEFFVHYSRICI-IDGERVSNEKRRQND 195 (435) T ss_pred ccchhhccCCccc---------------ccCcc---eEEEEecCC-----CCCceEEcceeEEE-ecCCcchhhhccccC Confidence 3321000000000 00001 111111000 00000011111111 111 1111 12345 Q ss_pred cCCCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC-----cccchhhHHh-------hhhccceecC-CCCc Q lcl|Aclame:pro 256 DLEISDI-FMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD-----DQELPEFKRL-------LRYYGAIKVS-DNGG 321 (492) Q Consensus 256 ~~~~s~~-~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~-----~~~~~~~~~~-------~~~~~~~~~~-~~~d 321 (492) .+|.|.+ +.+.+.+..++.+....+..+..+..+.+.+.|.. +......... ....+.+.+. ++.+ T Consensus 196 ~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~ 275 (435) T protein:vir:79 196 GWGASILNKRLIEAIVDYNYCQELATQLLRRKQQAVWKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEE 275 (435) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcc Confidence 6788877 68889888999998888888888888777776631 1111111111 1123333333 3333 Q ss_pred ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCc--cccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 322 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS--DKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVF 398 (492) Q Consensus 322 ~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~--~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 398 (492) .+. ...+...+...++...+.|...+++|-.-+ ...+ -|.||..-...|...... ..+..+...+++++++++ T Consensus 276 ~e~--~~~~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~yyd~i~~--~Qe~~l~p~l~~l~~li~ 351 (435) T protein:vir:79 276 YEV--LNSDVSGVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETFYKLIDR--KRVEDYKPILEFLLPFMI 351 (435) T ss_pred eEE--EecccCCHHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh Confidence 444 456677889999999999999999996432 2222 246676655444444432 335678888888888865 Q ss_pred HHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHh---------ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 399 EHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM---------GIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQL 469 (492) Q Consensus 399 ~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~---------g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~ 469 (492) .- .++.+.|++-...|..+.|+...+.+ |+++.+.+.+. ++..-.+. ... T Consensus 352 ~s-------~d~~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g~i~~~e~r~~-------------L~~~~~~~-~~~ 410 (435) T protein:vir:79 352 SE-------TEWSIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQAINLKETRDT-------------LRSICPDL-KIM 410 (435) T ss_pred cC-------CCCeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH-------------HHHhcccc-CCC Confidence 32 46789999999999999888765543 34444333322 21100000 000 Q ss_pred ccc--cCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 470 PNL--DDGGADSAQQQERSNNKESE 492 (492) Q Consensus 470 ~~~--~~~~~~~~~~~~~~~~~~~e 492 (492) ... .-..++..++++..++.+++ T Consensus 411 ~~~~~~~~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 411 DNDNIELPEPEDLDPEPGQEGGLNK 435 (435) T ss_pred CcccccCCccccCCCCCCCCCCCCC Confidence 000 00111222222233333333 No 114 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.25 E-value=8.7e-12 Score=81.22 Aligned_cols=381 Identities=12% Similarity=0.032 Sum_probs=182.7 Q ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHH Q lcl|Aclame:pro 53 IKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRI 132 (492) Q Consensus 53 i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l 132 (492) ++.+. ...| .+.-.|.++-..++......+ .... .-. -.+.+++.+|+..+.-++.+++.++++++. .++- T Consensus 1 ~~~~~--~d~~---~~~~~~~~~~~~~~~~~~~~~-~~l~-a~Y-~~~~l~~~~Vd~~aed~~r~g~~i~g~~~~-~~~~ 71 (427) T protein:vir:10 1 MKIVK--HDGY---NDIFNGGADGSPKPFFMSDAS-YHVG-SFY-NDNATAKRIVDVIPEEMVTAGFKMSGVKDE-KEFK 71 (427) T ss_pred CCccc--cchH---HHHhhcCCCCcccCccccCch-HHHH-HHH-HcCchhhhhhccchHHhhcCCccccCccHH-HHHH Confidence 10000 0011 111122211111111100000 0000 001 136788999999999999999999986543 2222 Q ss_pred HHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc----------e-EEEEEcccceEEEecCCCCCceEEEEEeeeec Q lcl|Aclame:pro 133 DEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGE----------F-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLE 201 (492) Q Consensus 133 ~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~----------~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 201 (492) ..|..=++...+.++.+.+..||.|++++-.+.+.. + .+.+++|.++.|-.... T Consensus 72 ~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~--------------- 136 (427) T protein:vir:10 72 SLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVT--------------- 136 (427) T ss_pred HHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhccccccccc--------------- Confidence 333333677889999999999999999886643221 1 22333333322211000 Q ss_pred cceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccce--E-eecCccCCCCcHH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 202 NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--I-PFKNNDLEISDIF-MYKTLIDAYNRRLS 277 (492) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v-~~~nn~~~~s~~~-~v~~liD~~~~~~s 277 (492) +-..-.++.+ ..|.+.... .......+.....+ |..-|+ . ...++.+|.|.+. .+.+.+..++++.. T Consensus 137 dp~s~~fg~P---~~y~v~~~~-----~~~~~~iH~SRli~-~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~ 207 (427) T protein:vir:10 137 NARSPRYGEP---EIYKVSPGD-----NMQPYLIHHSRVFI-ADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCES 207 (427) T ss_pred CccccccCcc---eEEEEecCC-----CCcceEEccccEEE-ecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHH Confidence 0000000000 111111100 00000011111111 111111 1 1134567888886 57787888888888 Q ss_pred HHHHHHHhcCCceEEEecCC-----cccchhhHHh-------hhhccceecC-CCCcceeeecccCHHHHHHHHHHHHHH Q lcl|Aclame:pro 278 DLSNTFKDSNELTYVLKNYD-----DQELPEFKRL-------LRYYGAIKVS-DNGGVDTIQVEVPVENSKKYLDELYQK 344 (492) Q Consensus 278 ~~~~~~~~~~~~~l~~~g~~-----~~~~~~~~~~-------~~~~~~~~~~-~~~d~~~l~~~~~~~~~~~~i~~l~~~ 344 (492) ..+..+..+....+.+.|.. +......... ....+.+.+. ++.+ +-....+...+...++...+. T Consensus 208 ~~~~l~~k~~~~v~k~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~--~e~~~~~lsgl~~~~~~~~~~ 285 (427) T protein:vir:10 208 LATQILRRKQQAVWKVKGLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEE--YDVLNSDISGVPEFLSSKMDR 285 (427) T ss_pred HHHHHHHHhccccccchhHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCc--eeEEecccCChHHHHHHHHHH Confidence 88888888888888776642 1111111111 1123333333 3333 444456777888899999999 Q ss_pred HHHHhCCCCCCc--ccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcC Q lcl|Aclame:pro 345 IMLFGQAVDFSS--DKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVAN 421 (492) Q Consensus 345 i~~~a~~p~~~~--~~~-~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d 421 (492) |...+++|-.-+ ... |-|.||..=...|..... ...+..+...+++++++++.- .++.+.|++-...+ T Consensus 286 iaaa~~IP~t~L~G~sp~Glnstgd~D~~nyyd~i~--~~Qe~~l~p~l~~l~~~i~~s-------~~~~~~f~pL~~~s 356 (427) T protein:vir:10 286 IVSLSGIHEIIIKNKNVGGVSASQNTALETFYKLVD--RKREEDYRPLLEFLLPFIVDE-------EEWSIEFEPLSVPS 356 (427) T ss_pred HHhhhCCCeeeeccCCccccccchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-------CCcEEEeCCCCCCC Confidence 999999996533 112 224566654444444333 233467888899888887622 36789999999999 Q ss_pred HHHHHHHHHHHh---------ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhcc---ccCCCCCCCCcCC-C-CC Q lcl|Aclame:pro 422 TELQVQTAQQSM---------GIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPN---LDDGGADSAQQQE-R-SN 487 (492) Q Consensus 422 ~~e~~~~~~k~~---------g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~---~~~~~~~~~~~~~-~-~~ 487 (492) ..|.|+...+.+ |+++.+.+.+.| ...-. . ....+ ........+.+.+ . ++ T Consensus 357 ~kEkaei~~~~a~a~~~~~~~gvi~~~e~r~~L-------------~~~~~-~-~~~~~~~~~~~e~~~~~~e~~p~~~e 421 (427) T protein:vir:10 357 KKEESEITKNNVESVTKAITEQIIDLEEARDTL-------------RSIAP-E-FKLKDGNNINIREPEETTEPEPGLGE 421 (427) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH-------------Hhhhc-c-ccCCCCccccccccchhcCCCCCCCC Confidence 999988755432 445555443322 11100 0 00000 0000000111111 1 11 Q ss_pred CCCCC Q lcl|Aclame:pro 488 NKESE 492 (492) Q Consensus 488 ~~~~e 492 (492) ++.+| T Consensus 422 ~~~d~ 426 (427) T protein:vir:10 422 KLEDE 426 (427) T ss_pred CCCCC Confidence 11111 No 115 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.24 E-value=1.4e-10 Score=74.57 Aligned_cols=429 Identities=8% Similarity=0.014 Sum_probs=203.1 Q ss_pred HHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcccc-ccccc Q lcl|Aclame:pro 6 LISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEY-YEQRPDIVK-EPKPV 83 (492) Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~Y-Y~G~~~i~~-~~~~~ 83 (492) +...+-|||.=--- ..-++...++-|.+.+.+|..--+-.++...| ++-+.+-+. ++.+. T Consensus 1 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (862) T protein:vir:99 1 MFKKLFKRFLIRQE------------------QSPEPTPVEASIADEIPRHDPLDPLARTRQNWPVQKEKPNPIIRSVKD 62 (862) T ss_pred ChhHHHHHHhhhhh------------------cCCCCccchhhhhhhccccCccchHHhhcccCCcccccCCCCCCcccc Confidence 22222222211111 11122334445555555552211111111111 111110000 00000 Q ss_pred cc--------------------------------c--------------------------ccccc----ccccc---c- Q lcl|Aclame:pro 84 DA--------------------------------T--------------------------GAVDP----LKPDD---R- 97 (492) Q Consensus 84 ~~--------------------------------~--------------------------~~~~~----~~~~~---r- 97 (492) .. . ..... ....+ . T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~gyql~al 142 (862) T protein:vir:99 63 FPFVEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQGFIGHQACAL 142 (862) T ss_pred cccccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccccccchhccccccccCcccHHHHHH Confidence 00 0 00000 00000 0 Q ss_pred -cccchHHHHHHHHHHhhhcCCeeecCCc------hhHHHHHHHHH-hccHHHHHHHHHHHHHhcCeEEEEEEeCC-CCc Q lcl|Aclame:pro 98 -MITNFHANLVDQKVSYIVGKPIAFKHTD------DEVVKRIDEVL-GNRFDDKLHSVLTGASNKGIEWLHPYLDE-EGE 168 (492) Q Consensus 98 -i~~n~~~~ivd~~~~~l~g~~~~~~~~d------~~~~~~l~~~~-~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~g~ 168 (492) -.+.+++.+|+..+.-.+.+++.+.+.+ ++..+.++..+ .-++...+.++.+.+-.||.+++++..+. |+. T Consensus 143 Y~~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~eair~~RLyGga~ililv~~~D~~ 222 (862) T protein:vir:99 143 IAQHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLIEFNRFKNVFGIRVAIFVVDSEDPD 222 (862) T ss_pred HHhCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEEecCcCch Confidence 1357788899999999999999998742 22333344333 33677888888888888998877765432 221 Q ss_pred ---------------e-EEEEEcccceEEEec---CCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccc Q lcl|Aclame:pro 169 ---------------F-KLFRVPAEQGIPIWT---DKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYS 229 (492) Q Consensus 169 ---------------~-~i~~~~p~~~~~i~d---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (492) + .+.+++|.++.|.-. ......+- ++.+ ..|.+... T Consensus 223 ~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~---------------yGkP---~~y~I~g~------- 277 (862) T protein:vir:99 223 YYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQF---------------FYEP---EFWIISGQ------- 277 (862) T ss_pred hhhcCcCcccccccceeEEEEechhhhcccccccccccccccc---------------cCCc---eeeeecCe------- Confidence 1 244455544443210 00000000 0000 01111000 Q ss_pred cccccccccceeccCCccceEee---cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcc-cchhhH Q lcl|Aclame:pro 230 NNLENSKTHFSTGSWGKIPFIPF---KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQ-ELPEFK 305 (492) Q Consensus 230 ~~~~~~~~~~~~~~~g~iPvv~~---~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~-~~~~~~ 305 (492) ..+..... -|..-|+..+ .++-+|.|.++.+.+.+..++.+....+..+..+....+.+.+...- +...+. T Consensus 278 ----~IH~SRli-if~g~~vpd~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~v~ktd~l~~l~~ed~l~ 352 (862) T protein:vir:99 278 ----KYHRSHLI-IARGPQPADILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTTAIHTDTAKAIANEDKFI 352 (862) T ss_pred ----eeccceeE-EecCCCchhhhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeechhHhhhccHHHHH Confidence 00000000 0111111111 23457999999999999999999888888888888888877665321 111222 Q ss_pred Hh-------hhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCc-cc--cccchhHHHHHHHHHHH Q lcl|Aclame:pro 306 RL-------LRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS-DK--FGSAPSGVALEFLYTNL 375 (492) Q Consensus 306 ~~-------~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~-~~--~~~~~Sg~Al~~~~~~l 375 (492) .. ....+++.++.+.+ |-..+.+...+...++...+.|...+++|-.-+ +. .|-+.||..=...|... T Consensus 353 ~r~~~~~~~rdN~Gi~liD~eEe--~e~ls~slSGL~dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~D~~nYyD~ 430 (862) T protein:vir:99 353 QRLMFWVRYRDNHAVKVLGTDET--MEQFDTSLADFDAVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEFETISYHEE 430 (862) T ss_pred HHHHHHHhccCcceeEEecCCCc--eeEEecccCChHHHHHHHHHHHHhhhCCCceeecccCcccccCchHHHHHHHHHH Confidence 11 11233455555544 444456777889999999999999999996532 22 24456777544444444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHH-------H--hccCChHHHHHhC- Q lcl|Aclame:pro 376 NLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQ-------S--MGIVSHETVLENH- 445 (492) Q Consensus 376 ~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k-------~--~g~vs~et~l~~l- 445 (492) +.. ..+..+...|++++.++...++.. .++.+.|++-...|..+.|+...+ + .|++|.+.+...| T Consensus 431 I~s--~QE~~L~P~LerL~~li~~~lg~~---~d~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~ 505 (862) T protein:vir:99 431 LES--IQEHVYMPFLQRHYLISRLSLGIQ---HEIDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIR 505 (862) T ss_pred HHH--HHHHHHHHHHHHHHHHHHHhcCCC---CcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH Confidence 332 234678889998888776656543 458899999999999998876533 2 4788888777653 Q ss_pred -------CCCCCHHHHHH-HHHHHHHHHHHhhccccCCCCCCCCcCCCC--------CCCCCC Q lcl|Aclame:pro 446 -------PFVEDLQAELE-RIEQEQTEYNKQLPNLDDGGADSAQQQERS--------NNKESE 492 (492) Q Consensus 446 -------~~v~D~~~E~~-ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~e 492 (492) +.++|.+.|-+ -+..|.... .............++.++ ++...+ T Consensus 506 ~~~~~g~~~l~ded~E~d~~~~~e~~~~---~e~~g~a~~~ap~de~~aga~~~~~e~d~~~~ 565 (862) T protein:vir:99 506 DDKRSGYNRLTKEDAEETPGASPENLAA---YQKAGAAQETASAKETQAGAAVTTAEGDQPNV 565 (862) T ss_pred hcCCcCCCCCCcccccccCCCCcccccc---cccCCcccccccccccccccCCccccCCcccc Confidence 22222111100 011111000 000000000000000000 000000 No 116 >protein:vir:95821 Length: 763 # NCBI annotation: 94 kDa protein # Family: family:all:1548 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950537;genbank:gi:119952228;genbank:GeneID:5075648 Probab=99.19 E-value=2e-10 Score=73.73 Aligned_cols=455 Identities=10% Similarity=0.086 Sum_probs=181.0 Q ss_pred HhcC-CceeccCCCcHHHHHHHHhhcCCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCccccccccccccccc Q lcl|Aclame:pro 14 LIKG-GNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVR---YIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAV 89 (492) Q Consensus 14 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~ 89 (492) +-.+ -|.+=.-+|+.. ... ..=++...+.+|... ..+.|...+.+...+.+||.|.-+.. +.. T Consensus 1 ~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------- 67 (763) T protein:vir:95 1 MEQNTDSMVPLPDPSQA--TKL--TSWKNELSLQALKADLDAAKPSHTAMMIKVKEWNDLMRIEGKAK--PPK------- 67 (763) T ss_pred CCcCccCcCCCccccch--hcC--CCCCChHHHHHHHHHHHhhhcchhHHHHHHHHHHHhhhccccCc--ccc------- Confidence 1111 011111111111 100 111233333333333 23345555555556666655543211 111 Q ss_pred cccccccccccchHHHHHHHHHHhh----hcCC--eeecCC---chhHHH----HHHH-HH-hccHHHHHHHHHHHHHhc Q lcl|Aclame:pro 90 DPLKPDDRMITNFHANLVDQKVSYI----VGKP--IAFKHT---DDEVVK----RIDE-VL-GNRFDDKLHSVLTGASNK 154 (492) Q Consensus 90 ~~~~~~~ri~~n~~~~ivd~~~~~l----~g~~--~~~~~~---d~~~~~----~l~~-~~-~n~~~~~~~~~~~~~~~~ 154 (492) ...| .+++.+-....|+...+.| ++.+ +.+.+- |....+ .++. ++ .|+-......++++++.+ T Consensus 68 ~~gr--s~vv~~~v~~~ve~~~~~l~~~f~~~~~~~~~~P~~~~D~~~A~q~t~~~n~~~~~~~~~~~~~~~~~~~~l~~ 145 (763) T protein:vir:95 68 VKGR--SQVQPKLVRRQAEWRYSALTEPFLGSNKLFKVTPVTWEDVQGARQNELVLNYQFRTKLNRVSFIDNYVRSVVDD 145 (763) T ss_pred cCCC--ccccCHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCcchHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhc Confidence 1112 2456665666666555444 3332 455432 222222 3333 22 355556678999999999 Q ss_pred CeEEEEEEeCC--------------------------------------------------------------------- Q lcl|Aclame:pro 155 GIEWLHPYLDE--------------------------------------------------------------------- 165 (492) Q Consensus 155 G~~~~~v~~d~--------------------------------------------------------------------- 165 (492) |.|++.||++. T Consensus 146 ~~gv~k~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (763) T protein:vir:95 146 GTGIVRVGWNREIRKEKQEVPVFSLFPIQTQEQADALQQALQLRTDNPRGYEENVDEAIKESVRFFDETGQATYAVQTGT 225 (763) T ss_pred CcceEEEeeeeeeeeeeeeehhhhhccccchhHHHHHHHHHHhhhhhhccccccccchhhhhhhhccccCcceeeecccc Confidence 99999987630 Q ss_pred ---------CCceEEEEEcccceEEEecCCCC-CceEEE-EEeeeeccc-------------------eeEE----EE-- Q lcl|Aclame:pro 166 ---------EGEFKLFRVPAEQGIPIWTDKEH-EELEAF-IRMYKLENE-------------------TKVE----YW-- 209 (492) Q Consensus 166 ---------~g~~~i~~~~p~~~~~i~d~~~~-~~~~~~-i~~~~~~~~-------------------~~~~----~~-- 209 (492) .++|+|..++|.++++-++...+ ....++ .+.+..... .... .+ T Consensus 226 ~~~~~~~~~k~~p~ie~V~p~d~~iDp~a~sD~~Da~~~~~~~~~t~~dL~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 305 (763) T protein:vir:95 226 TTTEVEVPLANHPTVEMLNPENIIIDPSCQGDINKAMFAIVSFETCKADLLKEKDRYHNLNKIDWQSSAPVNEPDHATTT 305 (763) T ss_pred eeEEEEEEecCceEEEeecHHHheecCCCCCchhhCceEeeEEeccHHHHHhccCCccccchhcchhccccccccccccc Confidence 12456777999998853332111 111222 222211000 0000 00 Q ss_pred -------e--cceEEEEEE------ecceeeeccc-cccccccccce--eccCCccceEeec-----CccCCCCcHHHHH Q lcl|Aclame:pro 210 -------D--KVTVNYYVY------ENGSLIPDYS-NNLENSKTHFS--TGSWGKIPFIPFK-----NNDLEISDIFMYK 266 (492) Q Consensus 210 -------~--~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~--~~~~g~iPvv~~~-----nn~~~~s~~~~v~ 266 (492) + ...|..+.+ .+..+..... .-.+....... +.+.|.+|++.++ ...+|.|.++.++ T Consensus 306 ~~~~~~~d~~~~~V~v~E~y~~~d~~gdg~~~~~~v~~~g~~iL~~~~~p~~~~~~PFv~~~~~p~~~~~~G~gi~~~~~ 385 (763) T protein:vir:95 306 PQEFQISDPMRKRVVAYEYWGFWDIEGNGVLEPIVATWIGSTLIRLEKNPYPDGKLPFVLIPYMPVKRDMYGEPDAELLG 385 (763) T ss_pred hhhccCCCcccceEEEEEeeeeeccCCcceeEEEEEEEEcCeeeecccccccCCCcCEEEecceeecCcccCCchHHHhh Confidence 0 011111110 0000000000 00011111222 2334667776543 4557899999999 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEE-ecCCcccchhhHHhhhhccceecCCCCcc----eeeecccCHHHHHHHHHHH Q lcl|Aclame:pro 267 TLIDAYNRRLSDLSNTFKDSNELTYVL-KNYDDQELPEFKRLLRYYGAIKVSDNGGV----DTIQVEVPVENSKKYLDEL 341 (492) Q Consensus 267 ~liD~~~~~~s~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~l~~~~~~~~~~~~i~~l 341 (492) ++++.+|...+.+.+.+...+.|.+.+ .|.- .. .+.. ..+.+.++.+..++++ .++..+.........+..+ T Consensus 386 d~Qr~~N~~~~~~~d~l~~~~~~~~~v~~gav-~~-~d~~-~~~pg~v~~v~~g~~~~~~~~~~~~p~~~~~~~~~l~~~ 462 (763) T protein:vir:95 386 DNQAVLGAVMRGMIDLLGRSANGQRGMPKGML-DA-LNSR-RYREGEDYEYNPTQNPAQMIIEHKFPELPQSALTMATLQ 462 (763) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEeecccc-cc-hhhh-cccCCceEEeeCCCChhhhcccccCCCCcchHHHHHHHH Confidence 999999999999999999888876644 3331 11 1111 1233445555444332 2222222233455556666 Q ss_pred HHHHHHHhCCCCCCccc----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------C-c Q lcl|Aclame:pro 342 YQKIMLFGQAVDFSSDK----FGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK----------G-E 406 (492) Q Consensus 342 ~~~i~~~a~~p~~~~~~----~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~----------~-~ 406 (492) ...+-..++++..+.+- .+...+|++. .............+.|..+++.+.+.++.++-.. + + T Consensus 463 ~~~~e~~TGv~~~~~G~~~~~~~~tat~v~~--l~qa~~~~~~~~~r~~~~~~k~l~~~~l~Li~q~~d~~rviRI~g~e 540 (763) T protein:vir:95 463 NQEAESLTGVKAFAGGVTGESYGDVAAGIRG--VLDAASKREMAILRRLAKGMSEIGNKIIAMNAVFLAEHEVVRITNEE 540 (763) T ss_pred HHHHHHhhCcchhhcCcCcccccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCc Confidence 66666777777665432 2223344433 3333344444555666667666666665543221 1 1 Q ss_pred ce---------eeeEEeCCCCCcCH-HHHHHHHHH---Hhc-cCChHHH---H----HhCC---CCC---------CH-- Q lcl|Aclame:pro 407 HK---------DVDISFNYNKVANT-ELQVQTAQQ---SMG-IVSHETV---L----ENHP---FVE---------DL-- 451 (492) Q Consensus 407 ~~---------~i~i~f~~~~p~d~-~e~~~~~~k---~~g-~vs~et~---l----~~l~---~v~---------D~-- 451 (492) +. +.+|+-... |.+. .+.+..+.. +.| .++.... + +... .+. |+ T Consensus 541 ~v~v~~~~~~~~~DV~V~~~-~as~~~q~~~~l~~ll~~l~~~~~~~~~~~il~~~~d~~~~~~~~~~lr~~q~~~d~~~ 619 (763) T protein:vir:95 541 FVTIKREDLKGNFDLEVDIS-TAEVDNQKSQDLGFMLQTIGPNVDQQITLNILAEIADLKRMPKLAHDLRTWQPQPDPVQ 619 (763) T ss_pred cccccHHHhcCCcceEEecc-cchHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHhhhchhhhHHHHHhcCCCccchh Confidence 11 111221111 1122 122222222 111 1221110 1 1010 000 10 Q ss_pred ----HHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 452 ----QAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 452 ----~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +.++++++.|.+....+.+... +.......+.+....+ T Consensus 620 q~qaqle~~~~q~e~~~~~akaq~~q---aqa~~~~aq~e~~~~d 661 (763) T protein:vir:95 620 EQLKQLAVEKAQLENEELRSKIRLND---AQAQKAMAERDNKNLD 661 (763) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH Confidence 1111111111111111100000 0000000000000000 No 117 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.16 E-value=3.8e-10 Score=72.25 Aligned_cols=433 Identities=10% Similarity=0.031 Sum_probs=198.8 Q ss_pred ChhhhHHHHHHHHHhcC----CceeccCCCcHHHHHHHHhhcCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKG----GNILYPSQPTQTEIFDAIVRTNNK-PETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPD 75 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~ 75 (492) +.+-++.+ .++...+- .-.+|.- |.- .++.++. .....+-+..+.--......... +..||....- T Consensus 38 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~------~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f 108 (765) T protein:vir:96 38 IKLGKIRG-WNVEPEKAPVIRSVKDFLE-PGL------SVAMDSAYGDGPTPAAKAAAGGQNPYVVPTM-LQDWYNSQGF 108 (765) T ss_pred hhHHHHhh-cccccccCCCCCCCCcccC-ccc------ceeccccccccccchHHHhhhccCccchhhH-HHhhhcccCC Confidence 11111111 11111110 0011111 000 0000000 00000000000000000000111 1223322110 Q ss_pred cccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchh----HHHHHHHHH-hccHHHHHHHHHHH Q lcl|Aclame:pro 76 IVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDE----VVKRIDEVL-GNRFDDKLHSVLTG 150 (492) Q Consensus 76 i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~----~~~~l~~~~-~n~~~~~~~~~~~~ 150 (492) +. + ... +-++ .+.+++.+|+..+.-.+.+++.+++++++ ..+.++..+ .=++...+.++.+. T Consensus 109 ~g----y-------ql~-alY~-~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~ 175 (765) T protein:vir:96 109 IG----Y-------QAC-AIIS-QHWLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRF 175 (765) T ss_pred cc----H-------HHH-HHHH-hCchhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHH Confidence 00 0 000 0011 35788999999999999999999886432 223333322 33678889999999 Q ss_pred HHhcCeEEEEEEeCC-CCc---------------e-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecce Q lcl|Aclame:pro 151 ASNKGIEWLHPYLDE-EGE---------------F-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVT 213 (492) Q Consensus 151 ~~~~G~~~~~v~~d~-~g~---------------~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 213 (492) +-.||.+|+++-.+. ++. + .+.+++|..+.|.-.......+ ..-.++.+ T Consensus 176 ~RlyGga~i~i~i~~~D~~~l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp------------~sp~fg~P-- 241 (765) T protein:vir:96 176 KNVFGVRIALFVVESDDPDYYEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADP------------SAEHFYEP-- 241 (765) T ss_pred hhhceeeEEEEEecccCcchhhccccccccccceeeEEEEechhhcccccchhccccc------------cccccCcc-- Confidence 999999998876542 221 1 1333444333331100000000 00001111 Q ss_pred EEEEEEecceeeeccccccccccccceeccCCccceEee---cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCce Q lcl|Aclame:pro 214 VNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPF---KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELT 290 (492) Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~---~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~ 290 (492) ..|.+... ..+..... -|..-|+-.+ .++-+|+|.++.+..-+..++++.-..+..+..+.... T Consensus 242 -~~y~i~g~-----------~IH~SRli-~~~g~~lpd~lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v 308 (765) T protein:vir:96 242 -DFWIISGK-----------KYHRSHLV-VVRGPQPPDILKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTST 308 (765) T ss_pred -eeeeecCc-----------eeccceEE-EecCCCchhhhccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccce Confidence 11111100 01111111 1111121111 12346999999999999999999888888888888888 Q ss_pred EEEecCCc-ccchhhHHh-------hhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCc-c-c-c Q lcl|Aclame:pro 291 YVLKNYDD-QELPEFKRL-------LRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS-D-K-F 359 (492) Q Consensus 291 l~~~g~~~-~~~~~~~~~-------~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~-~-~-~ 359 (492) +.+.+... ......... ....+++.++.+.+.+ ..+.+...+...++.+.+.|...+++|-.-+ + + . T Consensus 309 ~k~~~~~~l~~~~~l~~r~~~~~~~r~n~g~~~id~ee~~e--~~s~~lsgl~d~l~~~~~~iAaas~IP~t~LfGqsp~ 386 (765) T protein:vir:96 309 IHVDVEKAIANEDAFNARLAFWIANRDNHGVKVIGIDETME--QFDTNLSDFDSVIMNQYQLVAAIAKTPATKLLGTSPK 386 (765) T ss_pred eeechHhhhccHHHHHHHHHHHHHhcCCceeEEecCCccee--EEecccCCHHHHHHHHHHHHHhhhCCCeeeeccCCcc Confidence 87765422 111122211 1233455555554444 4456777889999999999999999986432 2 2 2 Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHH-------H Q lcl|Aclame:pro 360 GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQ-------S 432 (492) Q Consensus 360 ~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k-------~ 432 (492) |-|.||..=...|...+. ...+..+...|++++.+++...++. .++.+.|++-...+..+.|+...+ + T Consensus 387 GlnATGe~D~~nYyD~I~--s~Qe~~l~p~le~L~~li~~s~~i~---~d~~i~FnpL~~~sekEkAei~~k~Aea~~~~ 461 (765) T protein:vir:96 387 GFNATGEHETISYHEELE--SIQEHIFDPLLERHYLLLAKSESID---VQLEIVWNPVDSTTSQQQAELNNKKAATDEIY 461 (765) T ss_pred cccCcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCC---CcceEEeCCCCCCCHHHHHHHHHHHHHHHHHH Confidence 345677754444443332 2334678999999999988765543 358899999999999998876433 2 Q ss_pred --hccCChHHHHHhCC------C--CCCHHHHHH-HHHHHHHHHHHhhcccc--CCCCCCCC-----cCCCCCCCCCC Q lcl|Aclame:pro 433 --MGIVSHETVLENHP------F--VEDLQAELE-RIEQEQTEYNKQLPNLD--DGGADSAQ-----QQERSNNKESE 492 (492) Q Consensus 433 --~g~vs~et~l~~l~------~--v~D~~~E~~-ri~~E~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~e 492 (492) .|+++.+.+.+.|. + ++|-+.|.+ -+..|. ........ .......+ +....++..+. T Consensus 462 ~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~---~~~~~~~~~~~~~~~~e~~~~~a~p~~~eg~~~~ 536 (765) T protein:vir:96 462 INSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPEN---LAELEKAGAQSAKAKGEAERAEAQAGAVEGAGDP 536 (765) T ss_pred HhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCccc---cccccCCCcccccccCccccccCCCCccCCCCcc Confidence 37888888877652 1 111111100 011000 00000000 00000000 00000000000 No 118 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=99.10 E-value=2e-09 Score=68.24 Aligned_cols=440 Identities=9% Similarity=-0.007 Sum_probs=199.4 Q ss_pred hcCCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcccccccc--ccccccccccccccccccchHHHHHHHHHHh Q lcl|Aclame:pro 37 RTNNKPETLEEMIVRYIKQHL-EKLPEISIGQEYYEQRPDIVKEPKP--VDATGAVDPLKPDDRMITNFHANLVDQKVSY 113 (492) Q Consensus 37 ~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~~~~YY~G~~~i~~~~~~--~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~ 113 (492) +.++. ..+.+.+.+.+.... +|.+....++++|+=-- |.+... ..........+.+.++..+-+...++.+++. T Consensus 1 m~~d~-~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~l--P~~~~~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAs~ 77 (549) T protein:vir:10 1 MTNDD-AKILQALNADHGRMKEKRQSYEAVWNDVIDYLM--PRLDKFGQLPRPDSEKGRERSQKMFDSTAPLALRNFVAA 77 (549) T ss_pred CCcch-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc--cccccccccCCCCCCcccccccccccchHHHHHHHHHHH Confidence 22222 222233333333333 23444444555443211 111100 0000011112234466777788888888888 Q ss_pred hhcC--C-----eeecCCchh------HHHHHHH--------HH--hccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE Q lcl|Aclame:pro 114 IVGK--P-----IAFKHTDDE------VVKRIDE--------VL--GNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK 170 (492) Q Consensus 114 l~g~--~-----~~~~~~d~~------~~~~l~~--------~~--~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~ 170 (492) |++- | +++...++. +.+.++. +. ..+|.....++.++...+|.|.+++..+..+.++ T Consensus 78 l~~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~l~~~~~~~~~~~ 157 (549) T protein:vir:10 78 MDSMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGALMIEHDVGKGIV 157 (549) T ss_pred HHhhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhcceeeEEeecCCCeeE Confidence 8653 2 223333322 2223321 11 3578888899999999999999998877767778 Q ss_pred EEEEcccceEEEecCCCCCceEEEEEeeeec------------------------cceeEEEEecceEEEEEEeccee-- Q lcl|Aclame:pro 171 LFRVPAEQGIPIWTDKEHEELEAFIRMYKLE------------------------NETKVEYWDKVTVNYYVYENGSL-- 224 (492) Q Consensus 171 i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~-- 224 (492) ++.++..+++.--| ..+.+...+|.++.. ....++++. .+...... T Consensus 158 f~~~pl~~~~v~~d--~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~v~~------~V~pr~~~~~ 229 (549) T protein:vir:10 158 YRNVPMQRLWFAEN--NSGLIDKTHVQWELTLRQAAQRFGRENLSPSMQSTLEKDPEKSAIFYH------AVEPRADRDP 229 (549) T ss_pred EEEEEcCeEEEeeC--CCCCeEEEEEEeecCHHHHHHhcCcccCCHHHHHHhhcCCCceEEEEE------EeecCCCCCc Confidence 88888877766544 356666666543211 011222221 11100000 Q ss_pred -----------eeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 225 -----------IPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNE 288 (492) Q Consensus 225 -----------~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~ 288 (492) ...+... .. ......+|..+|++.+. ++.+|+|-.+...+-+..++.+.-......+.... T Consensus 230 ~~~~~~~~pf~sv~~e~~--~~-~il~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~ 306 (549) T protein:vir:10 230 RKLDGRNMQFASYWLDEG--RD-RIVQNSGFRTFPFAIGRFYVGTDDVYGGSPAYDAMPDVRMANDMAKTNIRGAQKLVD 306 (549) T ss_pred cccccccCceEEEEEEec--CC-EeeccCCcccCCcceeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 0000000 00 11122345567776543 34679999999999999999999899999999999 Q ss_pred ceEEEecCCcccchhhHHhhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHH Q lcl|Aclame:pro 289 LTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVAL 368 (492) Q Consensus 289 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al 368 (492) |.+.+.-.....................+.+..+..+....+....+..++.++..|...=....+....-+...++..+ T Consensus 307 p~~~v~~~g~~~~~~l~pgg~~~~~~~~~~~~~~~pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~~~~~~~~TAtEV 386 (549) T protein:vir:10 307 PPLLANEDGVLDGFDLRSGALNWGGLNDKGEEMVKPLLTGKQAQIGIEFAQDTRQTINQWFYVTLFQILVDSGDMTATEV 386 (549) T ss_pred CceeeccccccccceeccCCccccccCCCCccceeeeccccchhHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCccHHHH Confidence 99886422111111111111111111112223345444445666677778877776654322211111112334566655 Q ss_pred HHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHhccCC-------cceeeeEEeCCCCCcCHH-HHH-------HH Q lcl|Aclame:pro 369 EFLYTNLNLKAD----KL-ARKAKVAIQELLWFVFEHFDIKG-------EHKDVDISFNYNKVANTE-LQV-------QT 428 (492) Q Consensus 369 ~~~~~~l~~k~~----~~-~~~~~~~l~~~~~li~~~~~~~~-------~~~~i~i~f~~~~p~d~~-e~~-------~~ 428 (492) ......+..... +. ...+..-+.+.+.++.+..-.+. ....++|.+..++-+... +.+ +. T Consensus 387 ~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r~g~lP~~p~~l~~~~~~~~i~yis~La~aq~~~~~~~i~~~~~~ 466 (549) T protein:vir:10 387 LQRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAEAGQLPDMPQELIDAGADVDVEYDSPLNKAMRAGEGAAILQWLQQ 466 (549) T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhcCCceeEEEeecHHHHHHHHHHHHHHHHHHHH Confidence 554333333321 21 23344444555555554322221 233566666554443111 111 22 Q ss_pred HHHHhcc-------CChHHHHH----hCCCCC-C---HHHHHHHHHHHHHHHHHhhc------cccCCCCCCCCcCCCCC Q lcl|Aclame:pro 429 AQQSMGI-------VSHETVLE----NHPFVE-D---LQAELERIEQEQTEYNKQLP------NLDDGGADSAQQQERSN 487 (492) Q Consensus 429 ~~k~~g~-------vs~et~l~----~l~~v~-D---~~~E~~ri~~E~~~~~~~~~------~~~~~~~~~~~~~~~~~ 487 (492) +..++++ +....++. .++ |+ + .++|++++.+++++.++..+ ...+...+..+..+.+. T Consensus 467 ~~~laq~~Pe~ld~id~d~~~~~~a~~~G-vp~~~irs~eev~~~r~~~~~qqq~~~~~~~a~~a~~~a~~~~~~~ta~~ 545 (549) T protein:vir:10 467 LGIVSQFDPAAAKVPNGARIARLLADYGG-VPVEAMSTDEELQAQQAAEAQAAQMQQMLAAAPVAAGAIKDLSDAQTAAQ 545 (549) T ss_pred HHHHhccChhHHhcCCHHHHHHHHHHhcC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCc Confidence 2222221 22222222 222 21 1 35666666544332221111 11111111111111111 Q ss_pred CCCC Q lcl|Aclame:pro 488 NKES 491 (492) Q Consensus 488 ~~~~ 491 (492) .+-- T Consensus 546 ~~~~ 549 (549) T protein:vir:10 546 TARV 549 (549) T ss_pred ccCC Confidence 1111 No 119 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=99.07 E-value=3.1e-09 Score=67.25 Aligned_cols=435 Identities=8% Similarity=-0.009 Sum_probs=197.8 Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhh Q lcl|Aclame:pro 36 VRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIV 115 (492) Q Consensus 36 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~ 115 (492) +....+.+.+.+....+-.+.+.-..+.+.+.+|. +|.+......... ...+.+.++..+-+...++.+++.|+ T Consensus 1 M~~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~-----lP~~~~~~~~~~~-~~~~~~~~~~dst~~~a~~~LAa~L~ 74 (555) T protein:vir:10 1 MAEQTERKLLLSRWGQLRTERESWMSHWKEISDYL-----LPRAGRFFVQDRN-RGEKRHNNILDNTGTRALRVLAAGMM 74 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----CcccccccCCCCC-cchhcccccccccHHHHHHHHHHHHH Confidence 22333333333333333222222233334444443 1221111111111 11233456777888888888888886 Q ss_pred cC--C-----eeecCCc------hhHHHHHH--------HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEE Q lcl|Aclame:pro 116 GK--P-----IAFKHTD------DEVVKRID--------EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRV 174 (492) Q Consensus 116 g~--~-----~~~~~~d------~~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~ 174 (492) +- | +++...+ .++.+.|+ .+...+|.....++.++..++|.|.+++..+..+.+++..+ T Consensus 75 ~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~ 154 (555) T protein:vir:10 75 AGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSL 154 (555) T ss_pred HhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEe Confidence 43 2 2233322 22333332 23346888889999999999999999888887777888888 Q ss_pred cccceEEEecCCCCCceEEEEEeeeecc-------------------------ceeEEEEecceEEEEEEecceee---- Q lcl|Aclame:pro 175 PAEQGIPIWTDKEHEELEAFIRMYKLEN-------------------------ETKVEYWDKVTVNYYVYENGSLI---- 225 (492) Q Consensus 175 ~p~~~~~i~d~~~~~~~~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~---- 225 (492) +..+.+.--| ..+.+...+|.++..- ...+++ .+.++...... T Consensus 155 pl~~~~v~~d--~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v------~~~V~pr~~~~~~~~ 226 (555) T protein:vir:10 155 TAGEYAIAAD--NQGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTV------IHAIEPRADRDPSKR 226 (555) T ss_pred ecceeEEeeC--CCCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEE------EEEEeeccCcCcCCC Confidence 8888766433 4566766666433110 011221 11111100000 Q ss_pred ---------eccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 226 ---------PDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 226 ---------~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) ..+....... ......+|..+|++.+. .+.+|+|-.+...+-+..++.+.-......+....|.+ T Consensus 227 ~~~~~p~~s~~~~~~~d~~-~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~ 305 (555) T protein:vir:10 227 DDRNMAWKSVYFEPGADET-RTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPL 305 (555) T ss_pred CccccceEEEEEEeccCCc-cccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 0000000000 11122335567776553 34679999999999999999987778888888888877 Q ss_pred EEecCCcccchhhHHhhhhccceec--CCCCc--ceeeecccCHHHHHHHHHHHHHHHHHHhCCCC----CCccccccch Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLLRYYGAIKV--SDNGG--VDTIQVEVPVENSKKYLDELYQKIMLFGQAVD----FSSDKFGSAP 363 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~d--~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~----~~~~~~~~~~ 363 (492) .+........ .....+.+..+ +..++ .....+..+.......++.++..|...- ..+ +.. ..+... T Consensus 306 ~v~~~~~~~~----~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~~dlf~~l~~-~~~~~~ 379 (555) T protein:vir:10 306 QLPVSAKNQD----ISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASF-YADLFLMLAN-GTNPQM 379 (555) T ss_pred eecccccccc----ceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHh-hcchhhhccC-CCCCcc Confidence 7543211111 11122222111 22222 1222334466777777888888774322 222 111 123345 Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCC-----cceeeeEEeCCCCCcCHHH--------H Q lcl|Aclame:pro 364 SGVALEFLYTNLNLKADK-----LARKAKVAIQELLWFVFEHFDIKG-----EHKDVDISFNYNKVANTEL--------Q 425 (492) Q Consensus 364 Sg~Al~~~~~~l~~k~~~-----~~~~~~~~l~~~~~li~~~~~~~~-----~~~~i~i~f~~~~p~d~~e--------~ 425 (492) ++..+......+.....- ....+..-+.+.+.++.+..-.+. ....++|.+..++-+.... . T Consensus 380 TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~ 459 (555) T protein:vir:10 380 TATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRF 459 (555) T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHH Confidence 666665543333333221 122333334444444443221111 2334666666555432111 1 Q ss_pred HHHHHHHhccCC-------hHHHH----HhCCCCC----CHHHHHHHHHHHHHHHHHhhccc--cC----CCCCCCCcCC Q lcl|Aclame:pro 426 VQTAQQSMGIVS-------HETVL----ENHPFVE----DLQAELERIEQEQTEYNKQLPNL--DD----GGADSAQQQE 484 (492) Q Consensus 426 ~~~~~k~~g~vs-------~et~l----~~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~--~~----~~~~~~~~~~ 484 (492) ++.+..++++-| ...++ ..++ |+ -.++|++++.+++++.++..+.. .. .....++.+. T Consensus 460 l~~i~~laq~~P~vld~id~d~~~~~~a~~~G-vp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~~~~ 538 (555) T protein:vir:10 460 VGNLGAVAGIKPEVLDKFDADRWADTYADMLG-IDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGSVDT 538 (555) T ss_pred HHHHHHHhcCChhhhhcCCHHHHHHHHHHHhC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc Confidence 112222223212 22222 2232 21 13467776666644332222111 11 1111111111 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 485 RSNNKESE 492 (492) Q Consensus 485 ~~~~~~~e 492 (492) ...+.-.. T Consensus 539 ~~~~~~~~ 546 (555) T protein:vir:10 539 SKQNALTD 546 (555) T ss_pred CcchhHHH Confidence 11111111 No 120 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=99.07 E-value=3.1e-09 Score=67.25 Aligned_cols=435 Identities=8% Similarity=-0.009 Sum_probs=197.8 Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhh Q lcl|Aclame:pro 36 VRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIV 115 (492) Q Consensus 36 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~ 115 (492) +....+.+.+.+....+-.+.+.-..+.+.+.+|. +|.+......... ...+.+.++..+-+...++.+++.|+ T Consensus 1 M~~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~-----lP~~~~~~~~~~~-~~~~~~~~~~dst~~~a~~~LAa~L~ 74 (555) T protein:vir:98 1 MAEQTERKLLLSRWGQLRTERESWMSHWKEISDYL-----LPRAGRFFVQDRN-RGEKRHNNILDNTGTRALRVLAAGMM 74 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----CcccccccCCCCC-cchhcccccccccHHHHHHHHHHHHH Confidence 22333333333333333222222233334444443 1221111111111 11233456777888888888888886 Q ss_pred cC--C-----eeecCCc------hhHHHHHH--------HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEE Q lcl|Aclame:pro 116 GK--P-----IAFKHTD------DEVVKRID--------EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRV 174 (492) Q Consensus 116 g~--~-----~~~~~~d------~~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~ 174 (492) +- | +++...+ .++.+.|+ .+...+|.....++.++..++|.|.+++..+..+.+++..+ T Consensus 75 ~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~ 154 (555) T protein:vir:98 75 AGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSL 154 (555) T ss_pred HhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEe Confidence 43 2 2233322 22333332 23346888889999999999999999888887777888888 Q ss_pred cccceEEEecCCCCCceEEEEEeeeecc-------------------------ceeEEEEecceEEEEEEecceee---- Q lcl|Aclame:pro 175 PAEQGIPIWTDKEHEELEAFIRMYKLEN-------------------------ETKVEYWDKVTVNYYVYENGSLI---- 225 (492) Q Consensus 175 ~p~~~~~i~d~~~~~~~~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~---- 225 (492) +..+.+.--| ..+.+...+|.++..- ...+++ .+.++...... T Consensus 155 pl~~~~v~~d--~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v------~~~V~pr~~~~~~~~ 226 (555) T protein:vir:98 155 TAGEYAIAAD--NQGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTV------IHAIEPRADRDPSKR 226 (555) T ss_pred ecceeEEeeC--CCCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEE------EEEEeeccCcCcCCC Confidence 8888766433 4566766666433110 011221 11111100000 Q ss_pred ---------eccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 226 ---------PDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 226 ---------~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) ..+....... ......+|..+|++.+. .+.+|+|-.+...+-+..++.+.-......+....|.+ T Consensus 227 ~~~~~p~~s~~~~~~~d~~-~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~ 305 (555) T protein:vir:98 227 DDRNMAWKSVYFEPGADET-RTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPL 305 (555) T ss_pred CccccceEEEEEEeccCCc-cccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 0000000000 11122335567776553 34679999999999999999987778888888888877 Q ss_pred EEecCCcccchhhHHhhhhccceec--CCCCc--ceeeecccCHHHHHHHHHHHHHHHHHHhCCCC----CCccccccch Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLLRYYGAIKV--SDNGG--VDTIQVEVPVENSKKYLDELYQKIMLFGQAVD----FSSDKFGSAP 363 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~d--~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~----~~~~~~~~~~ 363 (492) .+........ .....+.+..+ +..++ .....+..+.......++.++..|...- ..+ +.. ..+... T Consensus 306 ~v~~~~~~~~----~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~~dlf~~l~~-~~~~~~ 379 (555) T protein:vir:98 306 QLPVSAKNQD----ISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASF-YADLFLMLAN-GTNPQM 379 (555) T ss_pred eecccccccc----ceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHh-hcchhhhccC-CCCCcc Confidence 7543211111 11122222111 22222 1222334466777777888888774322 222 111 123345 Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCC-----cceeeeEEeCCCCCcCHHH--------H Q lcl|Aclame:pro 364 SGVALEFLYTNLNLKADK-----LARKAKVAIQELLWFVFEHFDIKG-----EHKDVDISFNYNKVANTEL--------Q 425 (492) Q Consensus 364 Sg~Al~~~~~~l~~k~~~-----~~~~~~~~l~~~~~li~~~~~~~~-----~~~~i~i~f~~~~p~d~~e--------~ 425 (492) ++..+......+.....- ....+..-+.+.+.++.+..-.+. ....++|.+..++-+.... . T Consensus 380 TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~ 459 (555) T protein:vir:98 380 TATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRF 459 (555) T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHH Confidence 666665543333333221 122333334444444443221111 2334666666555432111 1 Q ss_pred HHHHHHHhccCC-------hHHHH----HhCCCCC----CHHHHHHHHHHHHHHHHHhhccc--cC----CCCCCCCcCC Q lcl|Aclame:pro 426 VQTAQQSMGIVS-------HETVL----ENHPFVE----DLQAELERIEQEQTEYNKQLPNL--DD----GGADSAQQQE 484 (492) Q Consensus 426 ~~~~~k~~g~vs-------~et~l----~~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~--~~----~~~~~~~~~~ 484 (492) ++.+..++++-| ...++ ..++ |+ -.++|++++.+++++.++..+.. .. .....++.+. T Consensus 460 l~~i~~laq~~P~vld~id~d~~~~~~a~~~G-vp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~~~~ 538 (555) T protein:vir:98 460 VGNLGAVAGIKPEVLDKFDADRWADTYADMLG-IDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGSVDT 538 (555) T ss_pred HHHHHHHhcCChhhhhcCCHHHHHHHHHHHhC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc Confidence 112222223212 22222 2232 21 13467776666644332222111 11 1111111111 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 485 RSNNKESE 492 (492) Q Consensus 485 ~~~~~~~e 492 (492) ...+.-.. T Consensus 539 ~~~~~~~~ 546 (555) T protein:vir:98 539 SKQNALTD 546 (555) T ss_pred CcchhHHH Confidence 11111111 No 121 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=99.07 E-value=3.1e-09 Score=67.25 Aligned_cols=435 Identities=8% Similarity=-0.009 Sum_probs=197.8 Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhh Q lcl|Aclame:pro 36 VRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIV 115 (492) Q Consensus 36 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~ 115 (492) +....+.+.+.+....+-.+.+.-..+.+.+.+|. +|.+......... ...+.+.++..+-+...++.+++.|+ T Consensus 1 M~~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~-----lP~~~~~~~~~~~-~~~~~~~~~~dst~~~a~~~LAa~L~ 74 (555) T protein:vir:10 1 MAEQTERKLLLSRWGQLRTERESWMSHWKEISDYL-----LPRAGRFFVQDRN-RGEKRHNNILDNTGTRALRVLAAGMM 74 (555) T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----CcccccccCCCCC-cchhcccccccccHHHHHHHHHHHHH Confidence 22333333333333333222222233334444443 1221111111111 11233456777888888888888886 Q ss_pred cC--C-----eeecCCc------hhHHHHHH--------HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEE Q lcl|Aclame:pro 116 GK--P-----IAFKHTD------DEVVKRID--------EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRV 174 (492) Q Consensus 116 g~--~-----~~~~~~d------~~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~ 174 (492) +- | +++...+ .++.+.|+ .+...+|.....++.++..++|.|.+++..+..+.+++..+ T Consensus 75 ~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~~rf~~~ 154 (555) T protein:vir:10 75 AGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAVVYHHSL 154 (555) T ss_pred HhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCceEEEEEe Confidence 43 2 2233322 22333332 23346888889999999999999999888887777888888 Q ss_pred cccceEEEecCCCCCceEEEEEeeeecc-------------------------ceeEEEEecceEEEEEEecceee---- Q lcl|Aclame:pro 175 PAEQGIPIWTDKEHEELEAFIRMYKLEN-------------------------ETKVEYWDKVTVNYYVYENGSLI---- 225 (492) Q Consensus 175 ~p~~~~~i~d~~~~~~~~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~---- 225 (492) +..+.+.--| ..+.+...+|.++..- ...+++ .+.++...... T Consensus 155 pl~~~~v~~d--~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v------~~~V~pr~~~~~~~~ 226 (555) T protein:vir:10 155 TAGEYAIAAD--NQGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTV------IHAIEPRADRDPSKR 226 (555) T ss_pred ecceeEEeeC--CCCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEE------EEEEeeccCcCcCCC Confidence 8888766433 4566766666433110 011221 11111100000 Q ss_pred ---------eccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 226 ---------PDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 226 ---------~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) ..+....... ......+|..+|++.+. .+.+|+|-.+...+-+..++.+.-......+....|.+ T Consensus 227 ~~~~~p~~s~~~~~~~d~~-~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~ 305 (555) T protein:vir:10 227 DDRNMAWKSVYFEPGADET-RTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQLQHEQLRKAQAIDYKSNPPL 305 (555) T ss_pred CccccceEEEEEEeccCCc-cccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 0000000000 11122335567776553 34679999999999999999987778888888888877 Q ss_pred EEecCCcccchhhHHhhhhccceec--CCCCc--ceeeecccCHHHHHHHHHHHHHHHHHHhCCCC----CCccccccch Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLLRYYGAIKV--SDNGG--VDTIQVEVPVENSKKYLDELYQKIMLFGQAVD----FSSDKFGSAP 363 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~d--~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~----~~~~~~~~~~ 363 (492) .+........ .....+.+..+ +..++ .....+..+.......++.++..|...- ..+ +.. ..+... T Consensus 306 ~v~~~~~~~~----~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI~~af-~~dlf~~l~~-~~~~~~ 379 (555) T protein:vir:10 306 QLPVSAKNQD----ISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERIKASF-YADLFLMLAN-GTNPQM 379 (555) T ss_pred eecccccccc----ceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHHHHHh-hcchhhhccC-CCCCcc Confidence 7543211111 11122222111 22222 1222334466777777888888774322 222 111 123345 Q ss_pred hHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCC-----cceeeeEEeCCCCCcCHHH--------H Q lcl|Aclame:pro 364 SGVALEFLYTNLNLKADK-----LARKAKVAIQELLWFVFEHFDIKG-----EHKDVDISFNYNKVANTEL--------Q 425 (492) Q Consensus 364 Sg~Al~~~~~~l~~k~~~-----~~~~~~~~l~~~~~li~~~~~~~~-----~~~~i~i~f~~~~p~d~~e--------~ 425 (492) ++..+......+.....- ....+..-+.+.+.++.+..-.+. ....++|.+..++-+.... . T Consensus 380 TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aq~~~~~~~i~~~ 459 (555) T protein:vir:10 380 TATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEMQGVDLNVEFVSMLAQAQRAIATNSVDRF 459 (555) T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeccHHHHHHHHHHHHHHHHH Confidence 666665543333333221 122333334444444443221111 2334666666555432111 1 Q ss_pred HHHHHHHhccCC-------hHHHH----HhCCCCC----CHHHHHHHHHHHHHHHHHhhccc--cC----CCCCCCCcCC Q lcl|Aclame:pro 426 VQTAQQSMGIVS-------HETVL----ENHPFVE----DLQAELERIEQEQTEYNKQLPNL--DD----GGADSAQQQE 484 (492) Q Consensus 426 ~~~~~k~~g~vs-------~et~l----~~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~--~~----~~~~~~~~~~ 484 (492) ++.+..++++-| ...++ ..++ |+ -.++|++++.+++++.++..+.. .. .....++.+. T Consensus 460 l~~i~~laq~~P~vld~id~d~~~~~~a~~~G-vp~~~irs~eev~~~r~qr~~~~q~~~~a~~~~q~~~~~~~~~~~~~ 538 (555) T protein:vir:10 460 VGNLGAVAGIKPEVLDKFDADRWADTYADMLG-IDPELIVPGNQVALIRKQRADQQQAAQQAALLNQGADTAAKLGSVDT 538 (555) T ss_pred HHHHHHHhcCChhhhhcCCHHHHHHHHHHHhC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc Confidence 112222223212 22222 2232 21 13467776666644332222111 11 1111111111 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 485 RSNNKESE 492 (492) Q Consensus 485 ~~~~~~~e 492 (492) ...+.-.. T Consensus 539 ~~~~~~~~ 546 (555) T protein:vir:10 539 SKQNALTD 546 (555) T ss_pred CcchhHHH Confidence 11111111 No 122 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=99.02 E-value=5.5e-09 Score=65.89 Aligned_cols=432 Identities=11% Similarity=0.092 Sum_probs=205.7 Q ss_pred CChhhHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCccccccccc--cccccccccccccccccchHHHHHHHHHHhhhc Q lcl|Aclame:pro 40 NKPETLEEMIVRYIKQH-LEKLPEISIGQEYYEQRPDIVKEPKPV--DATGAVDPLKPDDRMITNFHANLVDQKVSYIVG 116 (492) Q Consensus 40 ~~~~~~~~~l~~~i~~~-~~~~~~~~~~~~YY~G~~~i~~~~~~~--~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g 116 (492) .+ .+++++++ +.. .+|.+....++++|+=- ++++.... .........+.+.|+..+-+...++.+++.|++ T Consensus 1 ~~---~~~l~~r~-~~l~~~R~~~e~~w~e~~~~~--lP~~~~~~~~~~~~~~~~~~~~~~i~dst~~~a~~~Las~L~~ 74 (547) T protein:vir:10 1 ME---NSKIVKRL-DFLKTDRKNVEQIWDCIRKYI--MPMRSDFFSDLRSEGSINWNQNREVFDSTAGDGLETLSSSLHG 74 (547) T ss_pred CC---HHHHHHHH-HHHHHHhhHHHHHHHHHHHHh--cccccccccCCCCCcccccccccccccchHHHHHHHHHHHHHH Confidence 22 23333332 222 23434444444444321 12221110 001111112345677888888999998888864 Q ss_pred C--C-----eeecCCc------hhHHHHHHH--------HHhccHHHHHHHHHHHHHhcCeEEEEEEeCCC--CceEEEE Q lcl|Aclame:pro 117 K--P-----IAFKHTD------DEVVKRIDE--------VLGNRFDDKLHSVLTGASNKGIEWLHPYLDEE--GEFKLFR 173 (492) Q Consensus 117 ~--~-----~~~~~~d------~~~~~~l~~--------~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~--g~~~i~~ 173 (492) - | +++...| .++.+.++. +...+|.....++.++..++|.|.+++-.|++ +.++++. T Consensus 75 ~ltPp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~d~~~~~~~r~~~ 154 (547) T protein:vir:10 75 SLTSPATKWFELAFRDKELNSDDECRKWLENATHDVYSALQDSNFNLEANETYIDLCGYGNAIMVEEEDEDEEGSVVFQS 154 (547) T ss_pred hhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEeccCCCCCCceeEEE Confidence 3 2 2233222 233333332 33467888899999999999999888866543 5688999 Q ss_pred EcccceEEEecCCCCCceEEEEEeeeecc-----------------------c-e---eEEEEecceEEEEEEeccee-- Q lcl|Aclame:pro 174 VPAEQGIPIWTDKEHEELEAFIRMYKLEN-----------------------E-T---KVEYWDKVTVNYYVYENGSL-- 224 (492) Q Consensus 174 ~~p~~~~~i~d~~~~~~~~~~i~~~~~~~-----------------------~-~---~~~~~~~~~~~~~~~~~~~~-- 224 (492) ++..+++.--| ..+++...+|.++..- . . .++++ +.++..... T Consensus 155 ~pl~~~~v~~d--~~G~v~~i~r~~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~v~------~~v~~~~~~~~ 226 (547) T protein:vir:10 155 SPIQDSYFEED--SRGQVVNFYRVFRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQEVV------MCVFTRYDKKQ 226 (547) T ss_pred eecceEEEeeC--CCcCeeeeeeeeeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEEEE------EEEeeccCCCC Confidence 98888766544 4566666665432210 0 0 11111 111110000 Q ss_pred ---------------eeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 225 ---------------IPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFK 284 (492) Q Consensus 225 ---------------~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~ 284 (492) ...+... +.........+|..+|++.+. ++.+|+|-.+...+-+..++.+.-......+ T Consensus 227 ~~~~~~~~~~~~~p~~s~~~e~-~~~~~~l~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~ 305 (547) T protein:vir:10 227 NRNAGTVLAPTERPFGKKWILK-EGAVQLGEEGGYYEMPAYAIRWRKSAGSQWGFGPSHLALPDVLTANRYVELVLRSSE 305 (547) T ss_pred CccccceeeccccceeEEEEEe-cCceeeeecCCcccCCeeeeeeeecCCcccccchHHHHHHHHHHHHHHHHHHHHHHH Confidence 0000000 000111223345667887653 3467999999999999999999988999999 Q ss_pred hcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchh Q lcl|Aclame:pro 285 DSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPS 364 (492) Q Consensus 285 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~S 364 (492) ....|.+.+.-..... . -+...+.++..++..+++.+....+.......++.++..|...=....+.. ..+...+ T Consensus 306 ~~~~pp~~v~~~g~~~--~--~~~~pgg~~~~~~~~~v~pl~~~~~~~~~~~~i~~~~~rI~~af~~d~~~~-~~~~~~T 380 (547) T protein:vir:10 306 KVIDPAIMVTERGLIS--D--IDLGASGLTVVRDMESMKPFESRARFDVSSIQLTDLRSAVRRIYYVDQLQM-KDSPAMT 380 (547) T ss_pred HHhcCceecccccccc--c--ceecCCeeeecCCcccceeeecccchHHHHHHHHHHHHHHHHHhhhhhhhc-CCCcccc Confidence 9999988764211111 1 112334455555666777776666777777888888877754222111111 1223456 Q ss_pred HHHHHHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHhccCC--------cceeeeEEeCCCCCcCHHH-H----- Q lcl|Aclame:pro 365 GVALEFLYTNLNLKAD----KL-ARKAKVAIQELLWFVFEHFDIKG--------EHKDVDISFNYNKVANTEL-Q----- 425 (492) Q Consensus 365 g~Al~~~~~~l~~k~~----~~-~~~~~~~l~~~~~li~~~~~~~~--------~~~~i~i~f~~~~p~d~~e-~----- 425 (492) +..+......+..... +. ...+..-+.+.+.++.+..-.+. ....++|++..++-+.... . T Consensus 381 AtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~~~~~~v~~is~Laraq~~~~~~~i~ 460 (547) T protein:vir:10 381 ATEVQVRYELMQRLLGPTLGRLENDFLSPMIQRTFNIRFRAGKLGELPSKLLESGKAAMDIVYTGPLSRAQKIDQAASIE 460 (547) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccCcceEEEEeccHHHHHHHHHHHHHHH Confidence 6655554333333322 11 12333344445554444322211 2345667776555543211 1 Q ss_pred --HHHHHHHhcc-------CChHHHHH----hCCCCC----CHHHHHHHHHHHHHHHHHhhcccc--CCCCCCCCcCCCC Q lcl|Aclame:pro 426 --VQTAQQSMGI-------VSHETVLE----NHPFVE----DLQAELERIEQEQTEYNKQLPNLD--DGGADSAQQQERS 486 (492) Q Consensus 426 --~~~~~k~~g~-------vs~et~l~----~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~~--~~~~~~~~~~~~~ 486 (492) ++.+..++++ +....++. .++ |+ -.++|++.+.+++++..+...... ....+..+..... T Consensus 461 ~~~~~v~~laq~~P~vld~id~d~~~~~~a~~~G-vp~~~irs~eev~~~r~qr~~~~q~~~qaa~~~~~g~~m~~~~~~ 539 (547) T protein:vir:10 461 RWAGSTAQLAEINPEVLDIPDWDEMVRMLGSLLG-APQTLMRPKAKVTSIRKNRSQTQQKAEQAAIAEAEGNAMEAQGKG 539 (547) T ss_pred HHHHHHHHhhccChhhhhcCCHHHHHHHHHHHhC-CChhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc Confidence 1222222232 22222222 222 22 135677766666543322211110 0000000000000 Q ss_pred CCC--CCC Q lcl|Aclame:pro 487 NNK--ESE 492 (492) Q Consensus 487 ~~~--~~e 492 (492) +.. +++ T Consensus 540 ~a~~~~~~ 547 (547) T protein:vir:10 540 QAALKENQ 547 (547) T ss_pred ccchhccC Confidence 000 111 No 123 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=98.97 E-value=8.5e-09 Score=64.83 Aligned_cols=441 Identities=9% Similarity=0.052 Sum_probs=198.1 Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhc Q lcl|Aclame:pro 37 RTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVG 116 (492) Q Consensus 37 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g 116 (492) +...+.+.+.+....+-.+.+.-..+.+.+.+|..- ++-...... .....+.+.++..+-+...++.+++.|++ T Consensus 1 m~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~lP-----~~~~~~~~~-~~~~~~~~~~~~dst~~~a~~~Las~l~~ 74 (556) T protein:vir:73 1 MAETEKERLLKQLAQLKNERTSFESHWLDLSDFINP-----RGSRFLTSD-VNRDDRRNTKIVDPTGSMAQRILSSGMMS 74 (556) T ss_pred CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----ccCCcCCCC-CCcchhhcCccccchHHHHHHHHHHHHHH Confidence 222222223333333333323333444455555321 111110000 01111223467778888888888888764 Q ss_pred C--C-----eeecCCc------hhHHHHHH--------HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 117 K--P-----IAFKHTD------DEVVKRID--------EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVP 175 (492) Q Consensus 117 ~--~-----~~~~~~d------~~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~ 175 (492) - | +++...+ .++.+.|+ .+...+|.....++.++..++|.|.+++..++.+.++++.++ T Consensus 75 ~ltpp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~r~~~~~ 154 (556) T protein:vir:73 75 GITSPARPWFKLATPDPDMMDYGPVKIWLEVVQRRMNEVFNKSNLYQSLPVMYASLGTFGTGAMAVMEDDQDVIRTMPFP 154 (556) T ss_pred hhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeeecCCceEEEEEee Confidence 3 2 2333322 22333332 233467888899999999999999998888777778888888 Q ss_pred ccceEEEecCCCCCceEEEEEeeeeccce--------e-----EEEE------ecceEEEEEEecceeee---------- Q lcl|Aclame:pro 176 AEQGIPIWTDKEHEELEAFIRMYKLENET--------K-----VEYW------DKVTVNYYVYENGSLIP---------- 226 (492) Q Consensus 176 p~~~~~i~d~~~~~~~~~~i~~~~~~~~~--------~-----~~~~------~~~~~~~~~~~~~~~~~---------- 226 (492) ..+++.--| ..+.+...+|.++..-.. . ...+ ....+.+.++....... T Consensus 155 l~~~~~~~d--~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~~v~~~V~pr~~~~~~~~~~~~~p~ 232 (556) T protein:vir:73 155 IGSYYLANS--PRGSVDTCIRQFSMTVRQMVQEFGLDNVSTSVKGMWENGTYETWVEVNHCITPNVNRDSGKMDSKNKPY 232 (556) T ss_pred cceeEEeeC--CCCCeEEEEEEEeccHHHHHHHcCcccCCHHHHHHHhcCCccceEEEEEEEeccccccccccCcccceE Confidence 888766444 456666666654321000 0 0000 00111111111111000 Q ss_pred ---ccccccccccccceeccCCccceEeec-----CccCCCCc-HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC Q lcl|Aclame:pro 227 ---DYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISD-IFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD 297 (492) Q Consensus 227 ---~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~-~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~ 297 (492) .+........ .....+|..+|++.+. ++.+|+|. .+...+-+..++.+.-......+....|.+.+.... T Consensus 233 ~s~~~~~~~~~~~-vl~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~~lgD~k~L~~l~~~~l~~~~~~~~pp~~v~~~~ 311 (556) T protein:vir:73 233 RSVYFESGGDSDK-LLRESGFDEFPILAPRWEVNGEDVYASSCPGMLALGQVKALQVEQKRKAQLIDKATNPPMVAPTSL 311 (556) T ss_pred EEEEEEecCCCce-ecccCCcccCCceeeeeeecCCcccccCccHHHhHHHHHHHHHHHHHHHHHHHHHhcCceeccccc Confidence 0000001111 1122345567776543 35579995 999999999999998888999999999988875432 Q ss_pred cccchhhHHhhhhccceec--C-CCCcceeee-cccCHHHHHHHHHHHHHHHHHHhCCCCCC--c-cccccchhHHHHHH Q lcl|Aclame:pro 298 DQELPEFKRLLRYYGAIKV--S-DNGGVDTIQ-VEVPVENSKKYLDELYQKIMLFGQAVDFS--S-DKFGSAPSGVALEF 370 (492) Q Consensus 298 ~~~~~~~~~~~~~~~~~~~--~-~~~d~~~l~-~~~~~~~~~~~i~~l~~~i~~~a~~p~~~--~-~~~~~~~Sg~Al~~ 370 (492) .... -....+.+... . +..+++.+. ...+.......++.++..|.. +...+.. . ...+.+.++..+.. T Consensus 312 ~~~~----~~~~pgg~~~~~~~~~~~~i~p~~~~~~d~~~~~~~i~~~~~rI~~-af~~d~~~~l~~~~~~r~TAtEv~~ 386 (556) T protein:vir:73 312 KNQR----VSLLPGDVTYLDVISGQDGFKPAYLVNPNTADLLADIQDTRQTINS-AYFVDLFMMLQNINTRSMPVEAVIE 386 (556) T ss_pred cccc----eeeccCccccccCCCCccceeeeccccccHHHHHHHHHHHHHHHHH-HhhcchhhhhccCCCCCccHHHHHH Confidence 1110 11222222221 2 222445442 234556666777777777743 2222211 1 11223456666555 Q ss_pred HHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHhccCC-----cceeeeEEeCCCCCcCHHH-HH-------HHHHHH Q lcl|Aclame:pro 371 LYTNLNLKAD----K-LARKAKVAIQELLWFVFEHFDIKG-----EHKDVDISFNYNKVANTEL-QV-------QTAQQS 432 (492) Q Consensus 371 ~~~~l~~k~~----~-~~~~~~~~l~~~~~li~~~~~~~~-----~~~~i~i~f~~~~p~d~~e-~~-------~~~~k~ 432 (492) ....+..... + ....+..-+.+++.++.+..-.+. ....++|.+..++-..... .+ +.+..+ T Consensus 387 r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~yis~La~aqk~~~~~~i~~~~~~~~~l 466 (556) T protein:vir:73 387 MKEEKLLMLGPVLERLNDEALNPLIDRVFSIMARKNMLPEPPDVLQGMPLRIEYISVMAQAQKSIGLTSLSQTVGFIGQL 466 (556) T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEEeecHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4333333322 1 122333444455554444322111 2345667775554331111 11 122222 Q ss_pred hcc-------CChHHHHH----hCCCCC----CHHHHHHHHHHHHHHHHHhhccccC--CCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 433 MGI-------VSHETVLE----NHPFVE----DLQAELERIEQEQTEYNKQLPNLDD--GGADSAQQQERSNNKESE 492 (492) Q Consensus 433 ~g~-------vs~et~l~----~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~e 492 (492) +++ +....++. .++ |+ -.++|++.+++++++.++.++.... ...+....-.+.+-+.++ T Consensus 467 aq~~Pe~~d~id~d~~~~~~a~~~G-vp~~~irs~eev~~~rq~r~~~qq~~~~~~~~~~a~~~~~~~~~~~~~~~~ 542 (556) T protein:vir:73 467 AQFKPEALDKLDVDQAIDAFSEMSG-VSPTVIVPQEQVQGIREERAKQAQAAQAMAMGQAAAQGAKTLSETQTSDPS 542 (556) T ss_pred hccChhhHhcCCHHHHHHHHHHHcC-CChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHH Confidence 222 22233332 222 21 1345666665544332222111100 000000000001111111 No 124 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=98.94 E-value=1.2e-08 Score=64.06 Aligned_cols=461 Identities=11% Similarity=0.116 Sum_probs=193.6 Q ss_pred CceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCcccc--cccccccccc-cc Q lcl|Aclame:pro 18 GNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKL----PEISIGQEYYEQRPDIVK--EPKPVDATGA-VD 90 (492) Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~----~~~~~~~~YY~G~~~i~~--~~~~~~~~~~-~~ 90 (492) -.++-+..--+ .=....+. -..+.+...|.+.++..+..+ ++.+.+.+||........ .+........ .. T Consensus 1 ~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~l~~~~~~~~~~R~~~e~~W~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (641) T protein:vir:94 1 MTIEMPTPIIE--DKESAKRK-LSTDRIGGVVISKWQESRDKRNTVENNWDETYELYRASAIDRQNTRARNFQTTGADDA 77 (641) T ss_pred CccCCCccccc--CCcchhhc-CCchhHHHHHHHHHHHHHHhhcchHHHHHHHHHHhhcchhhhhhcccccccccccchh Confidence 12222111100 00000000 112234455555555544422 234556667655432111 1111111111 11 Q ss_pred ccccccccccchHHHHHHHHHHhhhcC----C--eeec---CCchhHHHHHHHHH-----hccHHHHHHHHHHHHHhcCe Q lcl|Aclame:pro 91 PLKPDDRMITNFHANLVDQKVSYIVGK----P--IAFK---HTDDEVVKRIDEVL-----GNRFDDKLHSVLTGASNKGI 156 (492) Q Consensus 91 ~~~~~~ri~~n~~~~ivd~~~~~l~g~----~--~~~~---~~d~~~~~~l~~~~-----~n~~~~~~~~~~~~~~~~G~ 156 (492) .+ .+|+..+.+...++.+++.|++. + +++. .++.+..+.++.++ .+++.....++.++++.+|. T Consensus 78 ~~--r~ki~~~~~~~~~~~l~s~Lm~~~~p~~~wf~~~p~~~ed~~~A~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~g~ 155 (641) T protein:vir:94 78 DW--RHRINTGHTFEVVETLVAYFKGATFPSDDWFDLKGMVPELADAARVVKQLTKTKLEAASIRDIFETYVRNLVLYGV 155 (641) T ss_pred cc--cccccchhHHHHHHHHhhHHhhhhcCCCceEEEecCCCChHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhcCc Confidence 12 34788888888888888777542 2 2332 24444444444433 35667777889999999999 Q ss_pred EEEEEEeCC------------C----------------CceEEEEEcccceEEEecCCCCCceEEEEEeeeecc------ Q lcl|Aclame:pro 157 EWLHPYLDE------------E----------------GEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN------ 202 (492) Q Consensus 157 ~~~~v~~d~------------~----------------g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~------ 202 (492) +++.++++. . ..+++..++|.+++ +|+.....-..++++..... T Consensus 156 ~iv~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~v~~~di~--~dps~~~~~~~f~~~r~t~~t~~~l~ 233 (641) T protein:vir:94 156 STYRLGWDTSMERQFKRTFVETGDIFGGWEDVAVNRQRSELRIEPLSPYDVW--LDTSGGKNTGTFVRLRHTREELHELV 233 (641) T ss_pred eEEEeehhhHHHHhhhhhcccchhhcccccccceecccceeeEEecchhhee--ecCCCCcccccceehhhhHHHHHHHH Confidence 998886431 1 22355666666654 34433222222233221110 Q ss_pred --c----e------eEEE-E------------ecceEEEEEEecc------eeeeccccccccccccceec-cCCccceE Q lcl|Aclame:pro 203 --E----T------KVEY-W------------DKVTVNYYVYENG------SLIPDYSNNLENSKTHFSTG-SWGKIPFI 250 (492) Q Consensus 203 --~----~------~~~~-~------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~g~iPvv 250 (492) + + ..+. + ....+..+.+.+. ..........+........+ .|..+|++ T Consensus 234 ~eg~~~~d~v~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~e~~gd~~~d~~~~~~~~~~~~g~~il~~~~~~~~d~~Pf~ 313 (641) T protein:vir:94 234 TSGYYDLDLTQVEQYVDYKFADPDTPKDVNGTDTSGWDIIEYYGPLLVEGVQFWCVHAVFYGKQLIRLSDSKYWCGSPFV 313 (641) T ss_pred hcCCCChhhcchhhcccccccccccccccccccccccceeeeeeeeccCCCceeeEEEEEeCCEEeecccccccCcCCeE Confidence 0 0 0000 0 0000011111100 00000000001111111122 34566887 Q ss_pred eec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceee Q lcl|Aclame:pro 251 PFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTI 325 (492) Q Consensus 251 ~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 325 (492) .++ ..-+|+|..+.+.+.+..+|.+.....+.+.....|.+.+..........+ ....+.++..+..++++++ T Consensus 314 ~~r~~~~~~~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~~~~~~~~~~~l--~~~PG~ii~~~~~~~v~pl 391 (641) T protein:vir:94 314 TTTLLPDRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTLVEDGILKREDV--KAKPGAVFKVAQHGSLQPI 391 (641) T ss_pred EecceecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecccccccccee--eccCCcceeeCCCCcceee Confidence 654 345799999999999999999999999999999999887644221111111 1233445566666778877 Q ss_pred ecc-cCHHHHHHHHHHHHHHHHHHhCCCCCCcc---ccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH Q lcl|Aclame:pro 326 QVE-VPVENSKKYLDELYQKIMLFGQAVDFSSD---KFGSAPSGVALEFLYTNLNLKADKLARKAK-VAIQELLWFVFEH 400 (492) Q Consensus 326 ~~~-~~~~~~~~~i~~l~~~i~~~a~~p~~~~~---~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~-~~l~~~~~li~~~ 400 (492) ... .+.......++.+...|-...++..+... ..+.+.+|..+..+......+.....+.|. +++..+++-++.+ T Consensus 392 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV~~~~~e~~~~l~~i~r~l~~e~l~pll~~~~~~ 471 (641) T protein:vir:94 392 DMGRQDFVVTYQEAQVQESSVYRNTSTGPLIGNAAPRGGERVTAAEIQGVRDAGGNRLSSVHTHIEDSSTLPLLNKVFSL 471 (641) T ss_pred cCCccccchhHHHHHHHHHHHHHhhhhhhhhcccccccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 543 33334445566665555443333322211 112234566666666666666666666666 3555555554443 Q ss_pred hccCC---------------------cceeeeEEeCCCCCcCHHH---HHHHHHHHhcc------CCh-----------H Q lcl|Aclame:pro 401 FDIKG---------------------EHKDVDISFNYNKVANTEL---QVQTAQQSMGI------VSH-----------E 439 (492) Q Consensus 401 ~~~~~---------------------~~~~i~i~f~~~~p~d~~e---~~~~~~k~~g~------vs~-----------e 439 (492) +.... ...++...|.- .|...++ .++.+..+.++ .|. + T Consensus 472 ~~~~~~~p~i~R~~~~~~~~~~~~~~~p~~L~~~~~i-v~l~~~q~~~~~~~i~~l~~~~~~~a~~P~v~d~~d~~~~~~ 550 (641) T protein:vir:94 472 LQQFYVTPETIRMYVPEEQMDGFFEVSPEYLHYPYKF-LALGANYVVERERMVTDLLQLLDISGRVPQIGQSLDYALILE 550 (641) T ss_pred HHHhccchhhhhhhchhhhcccCCCCCccceeeeeeE-eecchhHHHHHHHHHHHHHHHHHHhhcChhhhhcCCHHHHHH Confidence 32110 11223222221 2333222 33333333221 121 1 Q ss_pred HHHHhCCC-C-------CCHHHHHHHHH-HHHHHHHH-hhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 440 TVLENHPF-V-------EDLQAELERIE-QEQTEYNK-QLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 440 t~l~~l~~-v-------~D~~~E~~ri~-~E~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .+++..+. + .|.+.+-..+. +|.++... .++... +.. ..+..++--..+ T Consensus 551 ~~~~~~g~~~p~~~ir~~~~~~~~~~~~~~~~q~~~~~~a~~~~-~~~---~~~a~~~~~~~~ 609 (641) T protein:vir:94 551 DLLRQMRFTDPMRYIKKAEAPPAAPPIAPAEPGALPPEMMNSVG-GGL---NDQAIAGMTPED 609 (641) T ss_pred HHHHHhCCCCchhhccCccCchhHHHHHHHHHHHHHHHHHHHHH-hhh---HHHHHHHhhHHH Confidence 12222221 0 01111111110 01111110 000000 000 000000000000 No 125 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=98.93 E-value=1.3e-08 Score=63.85 Aligned_cols=435 Identities=10% Similarity=0.051 Sum_probs=197.7 Q ss_pred hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhc Q lcl|Aclame:pro 37 RTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVG 116 (492) Q Consensus 37 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g 116 (492) +.....+.+.+....+-.+.+.-..+.+.+.+|.. |++-...... .....+.+.++..+-+...++.+++.|++ T Consensus 1 m~~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~l-----P~~~~~~~~~-~~~~~~~~~~~~dst~~~a~~~Las~l~~ 74 (559) T protein:vir:95 1 MAETTKERLNKQFAQLESERQSFEPHWRELSDYIN-----PRGSRFLTSE-VNRNDRRNTRIIDSTGTMAARTLASGMMS 74 (559) T ss_pred CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cccCCcCCCC-CCcccccccccccchHHHHHHHHHHHHHH Confidence 22222222333333333333333344445555531 1111110000 00111234467778888888888888764 Q ss_pred C--C-----eeecCCc------hhHHHHHH--------HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 117 K--P-----IAFKHTD------DEVVKRID--------EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVP 175 (492) Q Consensus 117 ~--~-----~~~~~~d------~~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~ 175 (492) - | +++...+ .++.+.|+ .+...+|.....++.++..++|.|.+++..+..+.++++.++ T Consensus 75 ~ltpp~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~Gta~l~~~~d~~~~~r~~~~~ 154 (559) T protein:vir:95 75 GITSPARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKSNLYQSLPQLYGSLGTYSTGAMAVLDDDEDIIRTMPFP 154 (559) T ss_pred hhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeEeecCCCceeEEEEee Confidence 3 2 2333322 23333332 233468888899999999999999988877766778899999 Q ss_pred ccceEEEecCCCCCceEEEEEeeeecc-------------------------ceeEEEEecceEEEEEEecceee----- Q lcl|Aclame:pro 176 AEQGIPIWTDKEHEELEAFIRMYKLEN-------------------------ETKVEYWDKVTVNYYVYENGSLI----- 225 (492) Q Consensus 176 p~~~~~i~d~~~~~~~~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~----- 225 (492) ..+++.--| ..+++...+|.++..- ...++++ +.++...... T Consensus 155 l~~~~v~~d--~~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~------~~V~pr~~~~~~~~~ 226 (559) T protein:vir:95 155 IGSYYLANS--PRGSVDTCFRKFSMTVRQLVQEFGLNNVSESVKSMWESGTYEKWIEVM------HSVYPNIDRDTSKLD 226 (559) T ss_pred cCeEEEeeC--CCCCeEEEEEeEecCHHHHHHHcCcccCCHHHHHHHhcCCCCCeEEEE------EEEeccccccccccc Confidence 888876544 4566666666433210 0112221 1111100000 Q ss_pred --------eccccccccccccceeccCCccceEeec-----CccCCCCc-HHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 226 --------PDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISD-IFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 226 --------~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~-~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) ..+....... ......+|..+|++.+. +..+|+|. .....+.+..++.+.-......+....|.+ T Consensus 227 ~~~~pf~s~~~e~~~~~~-~~l~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~al~d~k~L~~l~~~~l~~~~~~~~pp~ 305 (559) T protein:vir:95 227 SKNKPFKSVYYEVGGDND-KLLRESGFDEFPIMAPRWEVNGEDVYGSSCPGMLALGPVKALQLLQKRKSQLIDKATNPPM 305 (559) T ss_pred cccceEEEEEEEecCCCc-eeeecCCcccCCccceeeeecCCccccccchHHHhhHHHHHHHHHHHHHHHHHHHHhcCce Confidence 0000000000 11122345556776543 34579994 889999999999999889999999999988 Q ss_pred EEecCCcccchhhHHhhhhccceecCCCC---cceeee-cccCHHHHHHHHHHHHHHHHHHhCCCCC--C-ccccccchh Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLLRYYGAIKVSDNG---GVDTIQ-VEVPVENSKKYLDELYQKIMLFGQAVDF--S-SDKFGSAPS 364 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~-~~~~~~~~~~~i~~l~~~i~~~a~~p~~--~-~~~~~~~~S 364 (492) .+.+......- .+..+++...+..+ .++.+. ...+.......|+.++..|...-.. +. . ....+...+ T Consensus 306 ~v~~~~~~~~~----~l~pgg~~~~~~~~~~~~i~p~~~~~~~~~~~~~~i~~~~~rI~~af~~-d~~~~l~~r~~~rvT 380 (559) T protein:vir:95 306 VAPTSLKNQRA----SLLPGDITYIDQITGQDGFRPAYLVNPSTADLVADIQDTRQIINSAYFV-DLFMMLQNINTRSMP 380 (559) T ss_pred eccccccccce----eeeccceeeeCCCCCcccceeecccccchHHHHHHHHHHHHHHHHHhhh-hhHHHhhcCCCCCCC Confidence 87542211111 12222232222222 233321 2334555566677777666432221 21 1 112234456 Q ss_pred HHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHhccC--C---cceeeeEEeCCCCCcCH-HHH-------H Q lcl|Aclame:pro 365 GVALEFLYTNLNLKAD----K-LARKAKVAIQELLWFVFEHFDIK--G---EHKDVDISFNYNKVANT-ELQ-------V 426 (492) Q Consensus 365 g~Al~~~~~~l~~k~~----~-~~~~~~~~l~~~~~li~~~~~~~--~---~~~~i~i~f~~~~p~d~-~e~-------~ 426 (492) +..+......+..... + ....+..-+.+++.++.+..-.+ . ....++|++..++..-. .+. + T Consensus 381 AtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l~~~~i~v~~is~La~aqk~~~~~~i~~~~ 460 (559) T protein:vir:95 381 VEAVIEMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRKNMLPPPPDVMEGMPLKVEYISVMAQAQKSIGLSSLASTV 460 (559) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCcceEEEeecHHHHHHHHHHHHHHHHHH Confidence 6666554333333322 1 12233444455555554432211 1 22456677655554311 111 1 Q ss_pred HHHHHHhcc-------CChHHHHH----hCCCCC----CHHHHHHHHHHHHHHHHHhhcccc------CCCCCCCCcC-- Q lcl|Aclame:pro 427 QTAQQSMGI-------VSHETVLE----NHPFVE----DLQAELERIEQEQTEYNKQLPNLD------DGGADSAQQQ-- 483 (492) Q Consensus 427 ~~~~k~~g~-------vs~et~l~----~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~~------~~~~~~~~~~-- 483 (492) +.+..++++ +....++. .++ |+ -.++|++++++++++.++..+... +.....++-+ T Consensus 461 ~~~~~laq~~Pevld~id~d~~~~~~a~~~G-vp~~~irs~~ev~~~rqqr~~~qq~~q~~~~~~~aa~~~~~~~~~~~~ 539 (559) T protein:vir:95 461 NFIGQLAQVKPEALDKLNVDQAIDAFADMSG-VSPTVIVPQEQVEQARQQRAQQQQQQQMMAMGMAAAQGVKTLSEAKTS 539 (559) T ss_pred HHHHHHhccChhhhhcCCHHHHHHHHHHHhC-CchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCC Confidence 122222222 22233332 222 21 135666666655443332221111 1000000000 Q ss_pred -----------CCCCCCCCC Q lcl|Aclame:pro 484 -----------ERSNNKESE 492 (492) Q Consensus 484 -----------~~~~~~~~e 492 (492) -..+..+++ T Consensus 540 ~~~~l~~~~~~~~~~~~~~~ 559 (559) T protein:vir:95 540 DPSVLSAMANAVSGQGGQSQ 559 (559) T ss_pred ChhHHHHHHHhhcCccccCC Confidence 011112222 No 126 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=98.92 E-value=1.5e-08 Score=63.54 Aligned_cols=443 Identities=9% Similarity=0.021 Sum_probs=198.1 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) |+.|+.+ ....+..++....+-++.+.-..+.+.+.+|..-. .-. ... ........++..+-+ T Consensus 1 m~~~~~~--------~~~~~~~k~r~~~l~~~R~~~e~~w~e~~~~~lP~-----~~~---~~~-~~~~~~~~~~~dst~ 63 (535) T protein:vir:15 1 MADSKRT--------GLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPS-----LFP---KES-DNESTDYTTPWQAVG 63 (535) T ss_pred CCccchh--------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-----ccC---CCC-CcccccccccccccH Confidence 2211111 11112222333333332223334444555554331 100 000 001112234566667 Q ss_pred HHHHHHHHHhhhcC--C----eeecCCch-------------hHHHHHH--------HHHhccHHHHHHHHHHHHHhcCe Q lcl|Aclame:pro 104 ANLVDQKVSYIVGK--P----IAFKHTDD-------------EVVKRID--------EVLGNRFDDKLHSVLTGASNKGI 156 (492) Q Consensus 104 ~~ivd~~~~~l~g~--~----~~~~~~d~-------------~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~ 156 (492) ...++.+++.|++- | +++...+. ++...++ .+..++|.....++.++..++|. T Consensus 64 ~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~ 143 (535) T protein:vir:15 64 ARGLNNLASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGN 143 (535) T ss_pred HHHHHHHHHHHHHhhcCCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCc Confidence 77888887777542 2 22222221 2223332 23346889999999999999999 Q ss_pred EEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeec--------------------cceeEEEEecceEEE Q lcl|Aclame:pro 157 EWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLE--------------------NETKVEYWDKVTVNY 216 (492) Q Consensus 157 ~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~--------------------~~~~~~~~~~~~~~~ 216 (492) |.+++-.+..+.++++.++-.+.+.--| ..+++...+|.++.. ....+++|+.. + T Consensus 144 a~l~~~~~~~~~~~f~~~pl~~~~v~~d--~~G~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v---~ 218 (535) T protein:vir:15 144 ALLYLPEPEGSYNPMKLYRLSSYVVQRD--AYGNVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHV---Y 218 (535) T ss_pred eeEEeecCCCCceeeEEEEcCeeEEeeC--CCCCeeEEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEE---E Confidence 9888877766767888887666554433 456666666654321 11122333211 1 Q ss_pred EEEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 217 YVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) ...+++.+..................++..+|++.+. ++.+|+|-.++..+-+..++.+.-......+....|.+ T Consensus 219 ~~~~~~~~~~~~e~~g~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~ 298 (535) T protein:vir:15 219 LDEESGDYLKYEEVEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIG 298 (535) T ss_pred EecCCCcEEEEEEeeCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 1111111211111111111112233456677887653 34689999999999999999999999999999999997 Q ss_pred EEecCCcccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHH Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALE 369 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~ 369 (492) .+.-........+... ..+.+..+..++++.+. ...+.......++.++..|...- ..+......+...++..+. T Consensus 299 lv~~~g~~~~~~l~~~--~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af-~~~~~~~~~~~r~TAtEV~ 375 (535) T protein:vir:15 299 LVNPAGITQPRRLTKA--QTGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAF-MLNSAVQRTGERVTAEEIR 375 (535) T ss_pred eecccccccchhcccC--CceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHH-hhhhcccCCCccccHHHHH Confidence 7642111111121111 11233334455666654 23466777777888777774421 1111111112345655555 Q ss_pred HHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHhccC-CcceeeeEEeCCCCCcCH-HHHHHHHH----HHhcc--- Q lcl|Aclame:pro 370 FLYTNLNLKAD-K----LARKAKVAIQELLWFVFEHFDIK-GEHKDVDISFNYNKVANT-ELQVQTAQ----QSMGI--- 435 (492) Q Consensus 370 ~~~~~l~~k~~-~----~~~~~~~~l~~~~~li~~~~~~~-~~~~~i~i~f~~~~p~d~-~e~~~~~~----k~~g~--- 435 (492) .....+..... . ....+..-+.+++.++.+..-.+ .....++++|..++.... .+.++.+. .++++ T Consensus 376 ~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~ 455 (535) T protein:vir:15 376 YVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPM 455 (535) T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhcChh Confidence 43332222221 1 11222222233333332221111 112346677755544311 11122221 12221 Q ss_pred -----CChHHHHH----hCCCCC-----CHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCC--------CCCCCC Q lcl|Aclame:pro 436 -----VSHETVLE----NHPFVE-----DLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERS--------NNKESE 492 (492) Q Consensus 436 -----vs~et~l~----~l~~v~-----D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~e 492 (492) +....++. .++ |+ -.++|++++.+++++.....+.....++..+...... +..+.+ T Consensus 456 ~ld~~id~d~~~~~~a~~~G-vp~~~i~~~~eev~~~~~q~~~~~~~~~~a~~~g~~~~~~~~~~p~~~~~~~~~~g~~ 533 (535) T protein:vir:15 456 QGDPDINLAVIKLRIANAIG-IDTSGILLTDEQKQALMMQDAAQTGIENAAATGGAGVGALATSSPEAMQGAAAQAGLD 533 (535) T ss_pred hhhccCCHHHHHHHHHHHcC-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhccChHHHHHHHhccCCC Confidence 11222222 222 21 1355666666554433333222222222222111111 111111 No 127 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=98.90 E-value=1.7e-08 Score=63.18 Aligned_cols=442 Identities=10% Similarity=0.032 Sum_probs=201.0 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) |+ ......-..+..++....+-++.+.-..+.+.+.+|..-.- ..... ........++..+-+ T Consensus 1 m~--------~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~--~~~~~-------~~~~~~~~~~~dst~ 63 (535) T protein:vir:33 1 MA--------DSKRTGLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPSL--FPKES-------DNESTDYTTPWQAVG 63 (535) T ss_pred CC--------hhhhhccChhHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc--cCCCC-------CcccccccccccccH Confidence 22 11122222333344444444433333444555555543321 00000 001111234555667 Q ss_pred HHHHHHHHHhhhcC--C----eeecCCch-------------hHHHHHH--------HHHhccHHHHHHHHHHHHHhcCe Q lcl|Aclame:pro 104 ANLVDQKVSYIVGK--P----IAFKHTDD-------------EVVKRID--------EVLGNRFDDKLHSVLTGASNKGI 156 (492) Q Consensus 104 ~~ivd~~~~~l~g~--~----~~~~~~d~-------------~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~ 156 (492) ...++.+++.|++- | +++...+. +....++ .+..++|.....++.++..++|. T Consensus 64 ~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~ 143 (535) T protein:vir:33 64 ARGLNNLASKLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGN 143 (535) T ss_pred HHHHHHHHHHHHHhhcCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCc Confidence 77788877777542 2 22222221 1222222 23446899999999999999999 Q ss_pred EEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeec--------------------cceeEEEEecceEEE Q lcl|Aclame:pro 157 EWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLE--------------------NETKVEYWDKVTVNY 216 (492) Q Consensus 157 ~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~--------------------~~~~~~~~~~~~~~~ 216 (492) |.+++-.+..+.++++.++-.+.+.- .| ..+++...+|.++.. ....+++|+.. + T Consensus 144 a~l~~~~~~~~~~~f~~~pl~~~~v~-~d-~~G~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v---~ 218 (535) T protein:vir:33 144 ALLYLPEPEGSYNPMKLYRLSSYVVQ-RD-AYGNVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHV---Y 218 (535) T ss_pred eeEEeecCCCCceeeEEEEcCeeEEe-eC-CCCCeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEE---E Confidence 98888777666778888876655443 33 456666666654321 01112222210 1 Q ss_pred EEEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 217 YVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) ...+++.+..................++..+|++.+. ++.+|+|-.++..+-+..++.+.-......+....|.+ T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~ 298 (535) T protein:vir:33 219 LDEESGDYLKYEEVEDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIG 298 (535) T ss_pred eeCCCCcEEEEEEEeCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 1111111111111111111112222346678887653 34689999999999999999999999999999999997 Q ss_pred EEecCCcccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHH Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALE 369 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~ 369 (492) .+.-........+... ..+.+..+..++++.+. ...+.......++.++..|...- ..+......+...++..+. T Consensus 299 lv~~~g~~~~~~~~~~--~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af-~~~~~~~~~~~r~TAtEV~ 375 (535) T protein:vir:33 299 LVNPAGITQPRRLTKA--QTGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAF-MLNSAVQRTGERVTAEEIR 375 (535) T ss_pred eeccccccchhhcccC--CceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHH-hhhhcccCCCccccHHHHH Confidence 7632111111121111 11233334455666654 23466777777888877774421 1111111112345555555 Q ss_pred HHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHhccC-CcceeeeEEeCCCCCcCH-HHHHHHHH----HHhcc--- Q lcl|Aclame:pro 370 FLYTNLNLKAD-K----LARKAKVAIQELLWFVFEHFDIK-GEHKDVDISFNYNKVANT-ELQVQTAQ----QSMGI--- 435 (492) Q Consensus 370 ~~~~~l~~k~~-~----~~~~~~~~l~~~~~li~~~~~~~-~~~~~i~i~f~~~~p~d~-~e~~~~~~----k~~g~--- 435 (492) .....+..... . ....+..-+.+++.++.+..-.+ .....++++|..++.... .+.++.+. .++++ T Consensus 376 ~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~aqr~~~~~~l~~~~~~la~~~P~ 455 (535) T protein:vir:33 376 YVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCISAWAALAPM 455 (535) T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHHHHHHHHHHHHHHHHHHHHhhChh Confidence 43332222221 1 11222222233333332221111 112346677755544311 11122221 11221 Q ss_pred -----CChHHHHH----hCCCCC-----CHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 436 -----VSHETVLE----NHPFVE-----DLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 436 -----vs~et~l~----~l~~v~-----D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +....++. .++ |+ -.++|++++.+++.+..+..+.....++..+. ....+.+..+ T Consensus 456 ~~d~~id~d~~~~~~a~~~G-vp~~~i~~~~ee~~~~~~q~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~ 524 (535) T protein:vir:33 456 QGDPDINLAVIKLRIANAIG-IDTSGILLTDEQKQALMMQDAAQTGVENAAAAGGAGVGA-LATSSPEAMQ 524 (535) T ss_pred hhhccCCHHHHHHHHHHHcC-CCHhHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-hhhcCChhHH Confidence 12222222 222 22 13566666666654443333322221211111 1111222222 No 128 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=98.88 E-value=2.2e-08 Score=62.60 Aligned_cols=444 Identities=9% Similarity=0.054 Sum_probs=192.2 Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 32 FDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 32 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~ 111 (492) |....+..+..+.+.+...++-++.+.-..+.+.+.+|..-. .-.. .... ......++..+-+...++.++ T Consensus 1 ~~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~-----~~~~-~~~~---~~~~~~~~~dst~~~a~~~La 71 (543) T protein:vir:88 1 MAETKREGLAEEGAKAVYERLKNDRVPYETRAENCAKVTIPS-----LFPK-DSDN---SSTDYTTPWQAVGARGLNNLS 71 (543) T ss_pred CcccccCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc-----cCCC-CCCc---ccccccccccchHHHHHHHHH Confidence 111112222222333333333333333334444555554431 1000 0000 111123456677777888888 Q ss_pred HhhhcC--Ce----eecCCch-------------hHHHHHH--------HHHhccHHHHHHHHHHHHHhcCeEEEEEEeC Q lcl|Aclame:pro 112 SYIVGK--PI----AFKHTDD-------------EVVKRID--------EVLGNRFDDKLHSVLTGASNKGIEWLHPYLD 164 (492) Q Consensus 112 ~~l~g~--~~----~~~~~d~-------------~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d 164 (492) +.|++- |. ++...+. ++...++ .+..++|.....++.++..++|.|.+++..+ T Consensus 72 a~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~ly~~~~ 151 (543) T protein:vir:88 72 AKVMLALFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEANSYRVTLFELIRQLALAGTALIYLPPP 151 (543) T ss_pred HHHHHhhcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeccC Confidence 777542 21 2222221 1222222 2334688999999999999999998777555 Q ss_pred CCCceE---EEEEcccceEEEecCCCCCceEEEEEeeeec-------------------cceeEEEEecceEEEEEEecc Q lcl|Aclame:pro 165 EEGEFK---LFRVPAEQGIPIWTDKEHEELEAFIRMYKLE-------------------NETKVEYWDKVTVNYYVYENG 222 (492) Q Consensus 165 ~~g~~~---i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 222 (492) ....++ ++.+ |..-|.+-.| ..+++...+|.+... ....+++|+.. +.+.+.+ T Consensus 152 ~~~~~~~~~~~~~-pl~~y~v~~d-~~G~v~~i~r~~~~~~~~l~~~~~~~v~~~~~~~p~~~~~v~~~V---~pr~~~~ 226 (543) T protein:vir:88 152 DASSNSYNPMKLY-TLHNHVVQRD-AFGNVLQIVTLDKVAYAALPEDVRNSLSGGQEYKPEQELEVYTHI---YIDDESG 226 (543) T ss_pred ccccceecceEEe-EcceEEEeeC-CCCCeeeeeeeeeccHHHHhHHhhHHHHHHhhcCCccceEEEEEE---EeecCCC Confidence 432222 3333 3333444443 356666666654321 11123333211 0111111 Q ss_pred eeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC Q lcl|Aclame:pro 223 SLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD 297 (492) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~ 297 (492) .+..................++..+|++.+. ++.+|+|-.+...+-+..++.+.-......+....|.+.+.-.. T Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~~v~~~g 306 (543) T protein:vir:88 227 DFLSYQEIEGVEVDGSDGQYPQDALPWIAVRWTKRDGEHYGRSHVEEYLGDLNSLESLNEAMIKFAMISSKVVGLVNPNG 306 (543) T ss_pred cccccccccCeeeecCCCccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccc Confidence 1111111111112122233445678877653 34689999999999999999999889999999999998763222 Q ss_pred cccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHH Q lcl|Aclame:pro 298 DQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNL 375 (492) Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l 375 (492) ......+... ..+.+..+..+++..+. ...+.......++.++..|...-...... ...+...+|..+......+ T Consensus 307 ~~~~~~~~~~--~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~-~~~~~r~TAtEV~~r~~E~ 383 (543) T protein:vir:88 307 ITQVRRLVKA--QTGDFVAGRKADIEFLQLEKTADFTVAKSVADAIEARLSYVFMLNSAV-QRSGERVTAEEIRYVASEL 383 (543) T ss_pred ccchhhcccC--CCceeecCCCCcceeeecccccchhHHHHHHHHHHHHHHHHHhhhhhc-cCCCCcccHHHHHHHHHHH Confidence 2222222111 11233334456666553 33466777788888887775322111111 1112345665555433333 Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHhccCC-cceeeeEEeCCC-CCcCHHHHHHHHHHH---hccCCh------- Q lcl|Aclame:pro 376 NLKADK-----LARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYN-KVANTELQVQTAQQS---MGIVSH------- 438 (492) Q Consensus 376 ~~k~~~-----~~~~~~~~l~~~~~li~~~~~~~~-~~~~i~i~f~~~-~p~d~~e~~~~~~k~---~g~vs~------- 438 (492) .....- ....+..-+.+++.++.+..-.+. ....+++.+... .+-...+.++.+... .|.++. T Consensus 384 ~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~v~~~~~p~vld~i 463 (543) T protein:vir:88 384 EDTLGGVYSILSQELQLPIVRVLLNQLQATQQIPNLPQEAVEPTVTTGAEALGRGQDLDKLTQFLNAVATVSQLNGDPDL 463 (543) T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeEEecHHHHHHHHHHHHHHHHHHHHHhccchhhhccC Confidence 222221 122222333333333333222111 112345555322 222222222322221 222322 Q ss_pred --HHHHH----hCCC-CC---CHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcC---------------CCCCCCCCC Q lcl|Aclame:pro 439 --ETVLE----NHPF-VE---DLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQ---------------ERSNNKESE 492 (492) Q Consensus 439 --et~l~----~l~~-v~---D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~e 492 (492) ..++. .++. .. -.++|++++.++++..+.........+....... -+.+...++ T Consensus 464 d~d~~~~~~a~~~Gv~~~~i~r~~~e~~~~~~q~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 542 (543) T protein:vir:88 464 NVNNIKLRLANAIGIDTAGLLLTEAEKAQAQSQEMLKQGGLNAAAGIGSGVAAQATASPEAMESAMDTAGVQPGPIATQ 542 (543) T ss_pred CHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhccChHHHHHHhhhcCCCCCCCCCC Confidence 22222 2232 11 1356677776655432222211111111000000 001111111 No 129 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=98.73 E-value=7.7e-08 Score=59.59 Aligned_cols=439 Identities=8% Similarity=0.026 Sum_probs=186.7 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCccccccccccccccccccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE----KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMI 99 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~ 99 (492) ++ .-......+-+++.+++.+. -..+.+.+.+|..-. +-.. .+. ...+...++. T Consensus 1 m~-------------~~~~~~~~~~~~~r~~~lk~~R~~~e~~w~e~~~~~lP~-----~~~~-~~~---~~~~~~~~~~ 58 (536) T protein:vir:21 1 MA-------------EKRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPS-----LFPK-DSD---NASTDYQTPW 58 (536) T ss_pred Cc-------------chhhchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-----ccCC-CCC---cccccccccc Confidence 11 11111123334444444433 233444455554331 1100 000 1112234567 Q ss_pred cchHHHHHHHHHHhhhcC--C----eeecCCchh-------------HHHHH--------HHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 100 TNFHANLVDQKVSYIVGK--P----IAFKHTDDE-------------VVKRI--------DEVLGNRFDDKLHSVLTGAS 152 (492) Q Consensus 100 ~n~~~~ivd~~~~~l~g~--~----~~~~~~d~~-------------~~~~l--------~~~~~n~~~~~~~~~~~~~~ 152 (492) .+-+...++.+++.|++- | +++...+.+ +.+.+ ..+..++|.....++.++.. T Consensus 59 dst~~~a~~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~ 138 (536) T protein:vir:21 59 QAVGARGLNNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLV 138 (536) T ss_pred cccHHHHHHHHHHHHHHhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH Confidence 777888888888777542 2 222222211 22222 22334688899999999999 Q ss_pred hcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeecc--------------------ceeEEEEec Q lcl|Aclame:pro 153 NKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN--------------------ETKVEYWDK 211 (492) Q Consensus 153 ~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------------------~~~~~~~~~ 211 (492) ++|.|.+++-.+..+.+ .++.++-.+++.--| ..+++...+|.++..- ...+++++. T Consensus 139 ~~G~a~ly~~e~~~~~~~~f~~~pl~~~~v~~d--~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~ 216 (536) T protein:vir:21 139 VAGNVLLYLPEPEGSNYNPMKLYRLSSYVVQRD--AFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTH 216 (536) T ss_pred hHCcEeEEEeeCCCCceeeEEEEEcCeEEEeeC--CCCCeeEEeeeeeccHHHHHHhhhhhhcccccccccccceeEEEE Confidence 99999887765554434 356666555544333 4566666666543210 111222221 Q ss_pred ceEEEEEEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 212 VTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDS 286 (492) Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~ 286 (492) . +...++..+..................+|..+|++.+. .+.+|+|-.++..+-+..++.+.-......... T Consensus 217 v---~~~~~~~~~~~~~e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a 293 (536) T protein:vir:21 217 I---YLDEDSGEYLRYEEVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMIS 293 (536) T ss_pred E---EEecCCCcEEEEeccCCeeeccccCccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 11111222222221111111222334457778887654 345799999999999999998877777766666 Q ss_pred CCceEEEecCCcccchhhHHhhhhccceecCCCCcceee--ecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchh Q lcl|Aclame:pro 287 NELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTI--QVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPS 364 (492) Q Consensus 287 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~S 364 (492) ..+.+.+.-........+.. ... +.+..+..+++..+ ....+.......++.++..|...-....... ..+...+ T Consensus 294 ~~~~~lv~p~g~~~~~~~~~-~~~-g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~l~~-~~~~r~T 370 (536) T protein:vir:21 294 SKVIGLVNPAGITQPRRLTK-AQT-GDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLNSAVQ-RTGERVT 370 (536) T ss_pred hcCCcccCcccccchhhhcc-CCC-cceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhhhccc-CCCCCcc Confidence 66555542111111111111 111 12222233444433 3344566667777777776643221111111 1123456 Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCC-cceeeeEEeCCCCC-cCHHHHHHHHHH----Hh Q lcl|Aclame:pro 365 GVALEFLYTNLNLKADK-----LARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYNKV-ANTELQVQTAQQ----SM 433 (492) Q Consensus 365 g~Al~~~~~~l~~k~~~-----~~~~~~~~l~~~~~li~~~~~~~~-~~~~i~i~f~~~~p-~d~~e~~~~~~k----~~ 433 (492) +..+......+.....- ....+..-+.+++.++.+..-.+. ....+++.+.-++. -...+.++.+.. ++ T Consensus 371 AtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la 450 (536) T protein:vir:21 371 AEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWA 450 (536) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHH Confidence 66655543333332221 112222233333333322211111 11123444433322 111122222211 12 Q ss_pred cc--------CChHHHH----HhCCCCC----CHHHHHHHHHHHHHHHHHhhcccc-------CCCCCCCC-cCCCCCCC Q lcl|Aclame:pro 434 GI--------VSHETVL----ENHPFVE----DLQAELERIEQEQTEYNKQLPNLD-------DGGADSAQ-QQERSNNK 489 (492) Q Consensus 434 g~--------vs~et~l----~~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~ 489 (492) ++ |....++ ..+|... -.++|++.+.+++++..+..+... .....+.+ -....+.. T Consensus 451 ~~~Pe~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (536) T protein:vir:21 451 ALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPEAMAAAADSV 530 (536) T ss_pred hhchhhhcccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHhhhhcc Confidence 21 1222222 2333211 135677776665443222211111 01111111 12222233 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) +-| T Consensus 531 g~~ 533 (536) T protein:vir:21 531 GLQ 533 (536) T ss_pred ccC Confidence 333 No 130 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=98.71 E-value=9e-08 Score=59.22 Aligned_cols=439 Identities=8% Similarity=0.024 Sum_probs=186.1 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCccccccccccccccccccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE----KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMI 99 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~ 99 (492) ++ .-......+-+++.+++.+. -..+.+.+.+|..-. +-.. .+. ...+...++. T Consensus 1 m~-------------~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~-----~~~~-~~~---~~~~~~~~~~ 58 (536) T protein:vir:10 1 MA-------------EKRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPS-----LFPK-DSD---NASTDYQTPW 58 (536) T ss_pred Cc-------------chhhchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-----ccCC-CCC---cccccccccc Confidence 11 11111123334444444433 233444455554331 1100 001 1112223566 Q ss_pred cchHHHHHHHHHHhhhcC--C----eeecCCchh-------------HHHHH--------HHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 100 TNFHANLVDQKVSYIVGK--P----IAFKHTDDE-------------VVKRI--------DEVLGNRFDDKLHSVLTGAS 152 (492) Q Consensus 100 ~n~~~~ivd~~~~~l~g~--~----~~~~~~d~~-------------~~~~l--------~~~~~n~~~~~~~~~~~~~~ 152 (492) .+-+...++.+++.|++- | +++...+.+ +.+.+ ..+..++|.....++.++.. T Consensus 59 dst~~~a~~~Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~ 138 (536) T protein:vir:10 59 QAVGARGLNNLASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLV 138 (536) T ss_pred cccHHHHHHHHHHHHHhhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH Confidence 777888888888777542 2 222222211 22222 22334688899999999999 Q ss_pred hcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeecc--------------------ceeEEEEec Q lcl|Aclame:pro 153 NKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN--------------------ETKVEYWDK 211 (492) Q Consensus 153 ~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~--------------------~~~~~~~~~ 211 (492) ++|.|.+++-.+..+.+ .++.++-.+++.--| ..+++...+|.+...- ...+++++. T Consensus 139 ~~G~a~ly~~e~~~~~~~~~~~~pl~~~~v~~d--~~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~ 216 (536) T protein:vir:10 139 VAGNVLLYLPEPEGSNYNPMKLYRLSSYVVQRD--AFGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTH 216 (536) T ss_pred hHCcEeEEEeeCCCCceeeEEEEEcCeEEEeeC--CCCCeeEEeeeeeccHHHHHHhhhhhhcccccccCcccceEEEEE Confidence 99999887765554434 356666555544333 4566666666543210 011222221 Q ss_pred ceEEEEEEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 212 VTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDS 286 (492) Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~ 286 (492) . +.....+.+..................+|..+|++.+. .+.+|+|-.++..+-+..++.+.-......... T Consensus 217 V---~~~~~~~~~~~~~e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a 293 (536) T protein:vir:10 217 I---YLDEASGEYLRYEEVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIVKMSMIS 293 (536) T ss_pred E---EEecCCCcEEEEEeecCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 11111111221111111111122334456778887654 346799999999999999998877777766666 Q ss_pred CCceEEEecCCcccchhhHHhhhhccceecCCCCcceee--ecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchh Q lcl|Aclame:pro 287 NELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTI--QVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPS 364 (492) Q Consensus 287 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~S 364 (492) ..+.+.+.-........+.. ... +.+..+..+++..+ ....+.......++.++..|...-....... ..+...+ T Consensus 294 ~~~~~lv~p~g~~~~~~~~~-~~~-g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~l~~-~~~~r~T 370 (536) T protein:vir:10 294 SKVIGLVNPAGITQPRRLTK-AQT-GDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLNSAVQ-RTGERVT 370 (536) T ss_pred hcCCcccCcccccchhhhcc-CCC-cceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhhhccc-CCCCCcc Confidence 66555542111111111111 111 12222233444433 3344566667777777776643221111111 1123456 Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCC-cceeeeEEeCCCCC-cCHHHHHHHHHH----Hh Q lcl|Aclame:pro 365 GVALEFLYTNLNLKADK-----LARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYNKV-ANTELQVQTAQQ----SM 433 (492) Q Consensus 365 g~Al~~~~~~l~~k~~~-----~~~~~~~~l~~~~~li~~~~~~~~-~~~~i~i~f~~~~p-~d~~e~~~~~~k----~~ 433 (492) +..+......+.....- ....+..-+.+++.++.+..-.+. ....+++.+.-++. -...+.++.+.. ++ T Consensus 371 AtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~l~~l~r~~~~~~l~~~~~~la 450 (536) T protein:vir:10 371 AEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTISTGLEAIGRGQDLDKLERCVTAWA 450 (536) T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEEecHHHHHHHHHHHHHHHHHHHHH Confidence 66655543333332221 112222233333333322211111 11123444433322 111122222211 12 Q ss_pred cc--------CChHHHH----HhCCCCC----CHHHHHHHHHHHHHHHHHhhcccc-------CCCCCCCC-cCCCCCCC Q lcl|Aclame:pro 434 GI--------VSHETVL----ENHPFVE----DLQAELERIEQEQTEYNKQLPNLD-------DGGADSAQ-QQERSNNK 489 (492) Q Consensus 434 g~--------vs~et~l----~~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~ 489 (492) ++ +....++ ..+|... -.++|++.+.+++++..+..+... .....+.+ -....+.. T Consensus 451 ~~~P~~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (536) T protein:vir:10 451 ALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQATASPEAMAAAADSV 530 (536) T ss_pred hhchhhhcccCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhcc Confidence 21 2222222 2333211 135677776665443222211111 00111111 12222223 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) +-| T Consensus 531 g~~ 533 (536) T protein:vir:10 531 GLQ 533 (536) T ss_pred ccC Confidence 333 No 131 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=98.56 E-value=2.8e-07 Score=56.50 Aligned_cols=391 Identities=8% Similarity=0.041 Sum_probs=172.4 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) |-|++-|....--..+........++..... ..+..+..... T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~-----------------------------------~~~~g~~~~~~--- 42 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKL-----------------------------------LEWLGISPSTI--- 42 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHH-----------------------------------HHHhCCCcCcc--- Confidence 7777665433211112222111111111111 11111110000 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec--C-------CchhHHHHHHHHHhc---cHHHHHHHHH Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--H-------TDDEVVKRIDEVLGN---RFDDKLHSVL 148 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~-------~d~~~~~~l~~~~~n---~~~~~~~~~~ 148 (492) .+.. . .-+.++-...+|+..++-+.+-|+.+- . .+.....+|.. .-| ....+...+. T Consensus 43 -~v~~------~---~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~-~PN~~~t~~~f~~~~~ 111 (432) T protein:vir:10 43 -SVKG------K---NALKVATVFACIKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRL-RPNPYMSSMNFFGSLE 111 (432) T ss_pred -ccch------h---hhhccHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHHHh-hccCCCCHHHHHHHHH Confidence 0000 0 001112223345555555555566541 1 11112222221 012 3356677788 Q ss_pred HHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeec Q lcl|Aclame:pro 149 TGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPD 227 (492) Q Consensus 149 ~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (492) .+.+.+|.+|+++.++..|++ .+..++|..+.+..++........ ..+|..........+... T Consensus 112 ~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~-~~~y~~~~~g~~~~~~~~--------------- 175 (432) T protein:vir:10 112 AQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKT-KMWYVVNTGGQQRVLKPE--------------- 175 (432) T ss_pred HHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccc-eEEEEEecCCeEEEEccc--------------- Confidence 899999999999999988886 577888988877665421100000 011111111100001111 Q ss_pred cccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---Ccc Q lcl|Aclame:pro 228 YSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQ 299 (492) Q Consensus 228 ~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~ 299 (492) -|+++++ ...|.|.+......++....+..-....+...+.|-.+++.. +.+ T Consensus 176 --------------------eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e 235 (432) T protein:vir:10 176 --------------------EILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNED 235 (432) T ss_pred --------------------cEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHH Confidence 1333322 224778787777777666665555555666666666665532 222 Q ss_pred cchhhHHhhh--------hccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHH Q lcl|Aclame:pro 300 ELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEF 370 (492) Q Consensus 300 ~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~ 370 (492) ....++..+. .++++.++++.+.+.+........+....+..++.|+..-++|..-.+... ++-|. ++. T Consensus 236 ~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~--~e~ 313 (432) T protein:vir:10 236 AKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNN--IEQ 313 (432) T ss_pred HHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc--HHH Confidence 2222222221 234555666555555544333444556677777888888888865543221 11111 111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C--CcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHH Q lcl|Aclame:pro 371 LYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-----K--GEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETV 441 (492) Q Consensus 371 ~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~-----~--~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~ 441 (492) .. ......+|.-.++.+...++. . .....+++.+..-+..|..+.++++.++. |+++...+ T Consensus 314 ~~----------~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~ 383 (432) T protein:vir:10 314 QQ----------QQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEA 383 (432) T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHH Confidence 11 111222233233322222211 1 11123455556667789999999988874 78998888 Q ss_pred HHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 442 LENHPFV--EDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKES 491 (492) Q Consensus 442 l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (492) +++++.- ++-+.-+-... ....+........+.+...+..+.+++.+ T Consensus 384 R~~~g~~pi~ggD~~~~~~n---~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 384 RSKEDLPPEAGGDRLLVNGN---MLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HHHhCCCCCCCCCeEeeccc---ccchhhccccccCCCCCCCCCCCCCCCCC Confidence 8877542 21111000000 00000111111112222233333444444 No 132 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=98.56 E-value=2.8e-07 Score=56.50 Aligned_cols=391 Identities=8% Similarity=0.041 Sum_probs=172.4 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) |-|++-|....--..+........++..... ..+..+..... T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~-----------------------------------~~~~g~~~~~~--- 42 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKL-----------------------------------LEWLGISPSTI--- 42 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHH-----------------------------------HHHhCCCcCcc--- Confidence 7777665433211112222111111111111 11111110000 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec--C-------CchhHHHHHHHHHhc---cHHHHHHHHH Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--H-------TDDEVVKRIDEVLGN---RFDDKLHSVL 148 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~-------~d~~~~~~l~~~~~n---~~~~~~~~~~ 148 (492) .+.. . .-+.++-...+|+..++-+.+-|+.+- . .+.....+|.. .-| ....+...+. T Consensus 43 -~v~~------~---~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~-~PN~~~t~~~f~~~~~ 111 (432) T protein:vir:10 43 -SVKG------K---NALKVATVFACIKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRL-RPNPYMSSMNFFGSLE 111 (432) T ss_pred -ccch------h---hhhccHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHHHh-hccCCCCHHHHHHHHH Confidence 0000 0 001112223345555555555566541 1 11112222221 012 3356677788 Q ss_pred HHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeec Q lcl|Aclame:pro 149 TGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPD 227 (492) Q Consensus 149 ~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (492) .+.+.+|.+|+++.++..|++ .+..++|..+.+..++........ ..+|..........+... T Consensus 112 ~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~-~~~y~~~~~g~~~~~~~~--------------- 175 (432) T protein:vir:10 112 AQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKT-KMWYVVNTGGQQRVLKPE--------------- 175 (432) T ss_pred HHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccc-eEEEEEecCCeEEEEccc--------------- Confidence 899999999999999988886 577888988877665421100000 011111111100001111 Q ss_pred cccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---Ccc Q lcl|Aclame:pro 228 YSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQ 299 (492) Q Consensus 228 ~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~ 299 (492) -|+++++ ...|.|.+......++....+..-....+...+.|-.+++.. +.+ T Consensus 176 --------------------eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e 235 (432) T protein:vir:10 176 --------------------EILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNED 235 (432) T ss_pred --------------------cEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHH Confidence 1333322 224778787777777666665555555666666666665532 222 Q ss_pred cchhhHHhhh--------hccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHH Q lcl|Aclame:pro 300 ELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEF 370 (492) Q Consensus 300 ~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~ 370 (492) ....++..+. .++++.++++.+.+.+........+....+..++.|+..-++|..-.+... ++-|. ++. T Consensus 236 ~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~--~e~ 313 (432) T protein:vir:10 236 AKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNN--IEQ 313 (432) T ss_pred HHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc--HHH Confidence 2222222221 234555666555555544333444556677777888888888865543221 11111 111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C--CcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHH Q lcl|Aclame:pro 371 LYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-----K--GEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETV 441 (492) Q Consensus 371 ~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~-----~--~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~ 441 (492) .. ......+|.-.++.+...++. . .....+++.+..-+..|..+.++++.++. |+++...+ T Consensus 314 ~~----------~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~ 383 (432) T protein:vir:10 314 QQ----------QQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEA 383 (432) T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHH Confidence 11 111222233233322222211 1 11123455556667789999999988874 78998888 Q ss_pred HHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 442 LENHPFV--EDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKES 491 (492) Q Consensus 442 l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (492) +++++.- ++-+.-+-... ....+........+.+...+..+.+++.+ T Consensus 384 R~~~g~~pi~ggD~~~~~~n---~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 384 RSKEDLPPEAGGDRLLVNGN---MLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HHHhCCCCCCCCCeEeeccc---ccchhhccccccCCCCCCCCCCCCCCCCC Confidence 8877542 21111000000 00000111111112222233333444444 No 133 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=98.56 E-value=2.8e-07 Score=56.50 Aligned_cols=391 Identities=8% Similarity=0.041 Sum_probs=172.4 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) |-|++-|....--..+........++..... ..+..+..... T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~-----------------------------------~~~~g~~~~~~--- 42 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKL-----------------------------------LEWLGISPSTI--- 42 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHH-----------------------------------HHHhCCCcCcc--- Confidence 7777665433211112222111111111111 11111110000 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec--C-------CchhHHHHHHHHHhc---cHHHHHHHHH Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--H-------TDDEVVKRIDEVLGN---RFDDKLHSVL 148 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~-------~d~~~~~~l~~~~~n---~~~~~~~~~~ 148 (492) .+.. . .-+.++-...+|+..++-+.+-|+.+- . .+.....+|.. .-| ....+...+. T Consensus 43 -~v~~------~---~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~-~PN~~~t~~~f~~~~~ 111 (432) T protein:vir:10 43 -SVKG------K---NALKVATVFACIKILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRL-RPNPYMSSMNFFGSLE 111 (432) T ss_pred -ccch------h---hhhccHHHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHHHh-hccCCCCHHHHHHHHH Confidence 0000 0 001112223345555555555566541 1 11112222221 012 3356677788 Q ss_pred HHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeec Q lcl|Aclame:pro 149 TGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPD 227 (492) Q Consensus 149 ~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (492) .+.+.+|.+|+++.++..|++ .+..++|..+.+..++........ ..+|..........+... T Consensus 112 ~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~-~~~y~~~~~g~~~~~~~~--------------- 175 (432) T protein:vir:10 112 AQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKT-KMWYVVNTGGQQRVLKPE--------------- 175 (432) T ss_pred HHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccc-eEEEEEecCCeEEEEccc--------------- Confidence 899999999999999988886 577888988877665421100000 011111111100001111 Q ss_pred cccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---Ccc Q lcl|Aclame:pro 228 YSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQ 299 (492) Q Consensus 228 ~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~ 299 (492) -|+++++ ...|.|.+......++....+..-....+...+.|-.+++.. +.+ T Consensus 176 --------------------eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e 235 (432) T protein:vir:10 176 --------------------EILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNED 235 (432) T ss_pred --------------------cEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHH Confidence 1333322 224778787777777666665555555666666666665532 222 Q ss_pred cchhhHHhhh--------hccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHH Q lcl|Aclame:pro 300 ELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEF 370 (492) Q Consensus 300 ~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~ 370 (492) ....++..+. .++++.++++.+.+.+........+....+..++.|+..-++|..-.+... ++-|. ++. T Consensus 236 ~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~--~e~ 313 (432) T protein:vir:10 236 AKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNN--IEQ 313 (432) T ss_pred HHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc--HHH Confidence 2222222221 234555666555555544333444556677777888888888865543221 11111 111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----C--CcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHH Q lcl|Aclame:pro 371 LYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-----K--GEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETV 441 (492) Q Consensus 371 ~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~-----~--~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~ 441 (492) .. ......+|.-.++.+...++. . .....+++.+..-+..|..+.++++.++. |+++...+ T Consensus 314 ~~----------~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~ 383 (432) T protein:vir:10 314 QQ----------QQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEA 383 (432) T ss_pred HH----------HHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHH Confidence 11 111222233233322222211 1 11123455556667789999999988874 78998888 Q ss_pred HHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 442 LENHPFV--EDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKES 491 (492) Q Consensus 442 l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (492) +++++.- ++-+.-+-... ....+........+.+...+..+.+++.+ T Consensus 384 R~~~g~~pi~ggD~~~~~~n---~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 384 RSKEDLPPEAGGDRLLVNGN---MLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HHHhCCCCCCCCCeEeeccc---ccchhhccccccCCCCCCCCCCCCCCCCC Confidence 8877542 21111000000 00000111111112222233333444444 No 134 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=98.54 E-value=3.2e-07 Score=56.18 Aligned_cols=383 Identities=10% Similarity=0.005 Sum_probs=166.9 Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 121 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 121 (492) +.+ +.+..++... .............|-.... ... .....+ .|. .-.-..|+..++-+.+-|+++ T Consensus 1 Mg~---f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~a-l~~--~~v~~cv~~Ia~~iA~~p~~~ 66 (416) T protein:vir:81 1 MGI---FYKNEKRDLQYNEDDLQMMVQTLPGFQGTK-------LRQ-YKDIEA-IRH--SDIFTAVMMIASDLARMPIRV 66 (416) T ss_pred CCc---ccccccccccCCCcchhHHHHHhccccccC-------ccc-cchhhh-hcc--hHHHHHHHHHHHhhccCceEE Confidence 211 1111000000 0000001111111110000 000 000000 011 111225666666666677776 Q ss_pred cCCchhH--HHHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEE Q lcl|Aclame:pro 122 KHTDDEV--VKRIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEA 193 (492) Q Consensus 122 ~~~d~~~--~~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~ 193 (492) ..+.... ......+.. |. ...+...+....+.+|.||+++.++..|.+ .+..++|..+.++.++. +.+.+ T Consensus 67 ~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~--g~~~~ 144 (416) T protein:vir:81 67 TVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDAR--GRLYY 144 (416) T ss_pred ecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCC--ccEEE Confidence 4322211 112222322 32 345667778888999999999999998887 47888999998877642 23322 Q ss_pred EEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----CccCCCCcHHHHHHHH Q lcl|Aclame:pro 194 FIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----NNDLEISDIFMYKTLI 269 (492) Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~~~s~~~~v~~li 269 (492) ...............+.... |++++ +...|.|.++.....+ T Consensus 145 ~~~~~~~~~~~~~~~~~~~e-----------------------------------vihir~~~~d~~~G~s~i~~~~~~i 189 (416) T protein:vir:81 145 FHQRIDSNGNNIERNVKFED-----------------------------------MLDIKFYSLDGINGLSLLDTLSRTI 189 (416) T ss_pred EEEEecCCCceeEEEEcccc-----------------------------------EEEeccCCCCCccccCHHHHHHHHH Confidence 11111111111111111111 12221 1234778777777777 Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEe--cCC-ccc-chhhHHhh--------hhccceecCCCCcceeeecccCHHHHHHH Q lcl|Aclame:pro 270 DAYNRRLSDLSNTFKDSNELTYVLK--NYD-DQE-LPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVPVENSKKY 337 (492) Q Consensus 270 D~~~~~~s~~~~~~~~~~~~~l~~~--g~~-~~~-~~~~~~~~--------~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 337 (492) +.......-..+.+...+.|-.+++ |.. .+. .+..+..+ ..++++.++++.+.+.++.......+... T Consensus 190 ~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~ 269 (416) T protein:vir:81 190 ESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRE 269 (416) T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHH Confidence 6655554445555566666666554 432 111 11122211 12345556655555555444344445566 Q ss_pred HHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcceeeeEE Q lcl|Aclame:pro 338 LDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKGEHKDVDIS 413 (492) Q Consensus 338 i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~~~~~i~i~ 413 (492) .+..+..|+..-++|..-.+...++.|.+..... |..+|.-++..+...++ .......+++. T Consensus 270 ~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~--------------~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~f~ 335 (416) T protein:vir:81 270 NKSSTREIAGVFGIPLHKFGIETANMSITDANLD--------------YLSTLKPYITCVCAELNFKFNDEYVNREFKFD 335 (416) T ss_pred HHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--------------HHHHHHHHHHHHHHHHhhhccccccCceEEEe Confidence 6677778888888886543221111121111111 11122222222222111 11122345555 Q ss_pred eCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) +..-+-.|..+.++++.++ .|+++.-.+.++++. +++.+..+-.+...-. ..+.... ..............+++ T Consensus 336 ~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~-~~~~~~~-~~~~~~~~~~~~~kgGe 413 (416) T protein:vir:81 336 TTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHV-NIELVDE-YQMNKSRATDKKLKGGE 413 (416) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccccc-ccccccc-cCcccccccccccCCCC Confidence 5555667888899988877 478999888887743 2332222111110000 0000000 11111122223445666 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) ++| T Consensus 414 ~n~ 416 (416) T protein:vir:81 414 ENE 416 (416) T ss_pred CCC Confidence 666 No 135 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=98.54 E-value=3.2e-07 Score=56.18 Aligned_cols=383 Identities=10% Similarity=0.005 Sum_probs=166.9 Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 121 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 121 (492) +.+ +.+..++... .............|-.... ... .....+ .|. .-.-..|+..++-+.+-|+++ T Consensus 1 Mg~---f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~a-l~~--~~v~~cv~~Ia~~iA~~p~~~ 66 (416) T protein:vir:45 1 MGI---FYKNEKRDLQYNEDDLQMMVQTLPGFQGTK-------LRQ-YKDIEA-IRH--SDIFTAVMMIASDLARMPIRV 66 (416) T ss_pred CCc---ccccccccccCCCcchhHHHHHhccccccC-------ccc-cchhhh-hcc--hHHHHHHHHHHHhhccCceEE Confidence 211 1111000000 0000001111111110000 000 000000 011 111225666666666677776 Q ss_pred cCCchhH--HHHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEE Q lcl|Aclame:pro 122 KHTDDEV--VKRIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEA 193 (492) Q Consensus 122 ~~~d~~~--~~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~ 193 (492) ..+.... ......+.. |. ...+...+....+.+|.||+++.++..|.+ .+..++|..+.++.++. +.+.+ T Consensus 67 ~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~--g~~~~ 144 (416) T protein:vir:45 67 TVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDAR--GRLYY 144 (416) T ss_pred ecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCC--ccEEE Confidence 4322211 112222322 32 345667778888999999999999998887 47888999998877642 23322 Q ss_pred EEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----CccCCCCcHHHHHHHH Q lcl|Aclame:pro 194 FIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----NNDLEISDIFMYKTLI 269 (492) Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~~~s~~~~v~~li 269 (492) ...............+.... |++++ +...|.|.++.....+ T Consensus 145 ~~~~~~~~~~~~~~~~~~~e-----------------------------------vihir~~~~d~~~G~s~i~~~~~~i 189 (416) T protein:vir:45 145 FHQRIDSNGNNIERNVKFED-----------------------------------MLDIKFYSLDGINGLSLLDTLSRTI 189 (416) T ss_pred EEEEecCCCceeEEEEcccc-----------------------------------EEEeccCCCCCccccCHHHHHHHHH Confidence 11111111111111111111 12221 1234778777777777 Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEe--cCC-ccc-chhhHHhh--------hhccceecCCCCcceeeecccCHHHHHHH Q lcl|Aclame:pro 270 DAYNRRLSDLSNTFKDSNELTYVLK--NYD-DQE-LPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVPVENSKKY 337 (492) Q Consensus 270 D~~~~~~s~~~~~~~~~~~~~l~~~--g~~-~~~-~~~~~~~~--------~~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 337 (492) +.......-..+.+...+.|-.+++ |.. .+. .+..+..+ ..++++.++++.+.+.++.......+... T Consensus 190 ~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~ 269 (416) T protein:vir:45 190 ESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRE 269 (416) T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHH Confidence 6655554445555566666666554 432 111 11122211 12345556655555555444344445566 Q ss_pred HHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcceeeeEE Q lcl|Aclame:pro 338 LDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKGEHKDVDIS 413 (492) Q Consensus 338 i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~~~~~i~i~ 413 (492) .+..+..|+..-++|..-.+...++.|.+..... |..+|.-++..+...++ .......+++. T Consensus 270 ~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~--------------~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~f~ 335 (416) T protein:vir:45 270 NKSSTREIAGVFGIPLHKFGIETANMSITDANLD--------------YLSTLKPYITCVCAELNFKFNDEYVNREFKFD 335 (416) T ss_pred HHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--------------HHHHHHHHHHHHHHHHhhhccccccCceEEEe Confidence 6677778888888886543221111121111111 11122222222222111 11122345555 Q ss_pred eCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) +..-+-.|..+.++++.++ .|+++.-.+.++++. +++.+..+-.+...-. ..+.... ..............+++ T Consensus 336 ~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~-~~~~~~~-~~~~~~~~~~~~~kgGe 413 (416) T protein:vir:45 336 TTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHV-NIELVDE-YQMNKSRATDKKLKGGE 413 (416) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccccc-ccccccc-cCcccccccccccCCCC Confidence 5555667888899988877 478999888887743 2332222111110000 0000000 11111122223445666 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) ++| T Consensus 414 ~n~ 416 (416) T protein:vir:45 414 ENE 416 (416) T ss_pred CCC Confidence 666 No 136 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=98.53 E-value=3.5e-07 Score=55.98 Aligned_cols=375 Identities=12% Similarity=0.003 Sum_probs=157.4 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |.+++........... .-..+..+..+...- .++. . +.-+.+.-...+|+ T Consensus 1 M~~f~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~----~~v~------~---~~al~~~~V~~~v~ 50 (397) T protein:vir:38 1 MPLLKLNKSHSQGFSL-----------------NDPDWVNFLTGGEAQ----KYVS------A---DTALKNSDIFSLIM 50 (397) T ss_pred CcchhhhhcccCcccC-----------------CchhhhhhhcCCcCC----ceec------h---HHhhccHHHHHHHH Confidence 2222211110000000 000011111111000 0000 0 00011112233455 Q ss_pred HHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCC Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDK 186 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~ 186 (492) ..+.-+.+-|+. .+++....++..-.. -....+...+..+.+.+|.||+.+-++.+|.+ .+..++|..+.++.+.. T Consensus 51 ~ia~~ia~~p~~--~~~~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~ 128 (397) T protein:vir:38 51 QLSGDLAMVRYT--SESDRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQD 128 (397) T ss_pred HHHHHHhhCccc--ccccHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCC Confidence 555545444543 333333322221111 13456777788899999999999988988876 67888998887766532 Q ss_pred CCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCc Q lcl|Aclame:pro 187 EHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISD 261 (492) Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~ 261 (492) . +.+.+.+.+ ..........+.... |++++. ...|.|. T Consensus 129 ~-~~~~y~~~~-~~~~~~~~~~~~~~e-----------------------------------iih~~~~~~~~~~~G~s~ 171 (397) T protein:vir:38 129 G-SGLIYNINF-DEPAIGYMENVPAAD-----------------------------------VIHIRLLSKNGGKTGISP 171 (397) T ss_pred C-ceEEEEEEe-ccccccceeEecCcc-----------------------------------EEEecCCCCCCccccccH Confidence 2 112111100 000000000001111 233322 1357888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC---cccchhhHHhhh-------hccceecCCCCcceeeecccCH Q lcl|Aclame:pro 262 IFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD---DQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPV 331 (492) Q Consensus 262 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~~-------~~~~~~~~~~~d~~~l~~~~~~ 331 (492) +......++....+..-..+.+...+.|-.++.-.. .+....+..... .++++.++++.+++-+...... T Consensus 172 i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d 251 (397) T protein:vir:38 172 LSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGGLLDAETRIARSKEISKQIHNSDGPVVIDALEDYKPLEVKGNI 251 (397) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhcccccCCceecCCCceEEecCCChhH Confidence 887777777666665556666666676666655322 222222222111 2234445555444444444445 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceee Q lcl|Aclame:pro 332 ENSKKYLDELYQKIMLFGQAVDFSSDKFGS-APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDV 410 (492) Q Consensus 332 ~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~-~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i 410 (492) ..+....+..+..|+..=++|..-.+...+ +.+....+. .+..+|.-++..+...++.+-- ..+ T Consensus 252 ~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~e~~~~--------------~~~~~l~P~~~~ie~~ln~~l~-~~~ 316 (397) T protein:vir:38 252 ASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQSSITQISG--------------QYAKSLNRYVQAIVGELNDKLH-ANI 316 (397) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcc-Chh Confidence 556677788888888887887654432222 222222111 1222233333332222211100 011 Q ss_pred eEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCC Q lcl|Aclame:pro 411 DISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERS 486 (492) Q Consensus 411 ~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (492) ++.+...+-.|..+.++++.++ .|+++...+.+.++.- ... ++-...... ..........++..+..+.+++. T Consensus 317 ~~~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~--d~~~~~~~~-~~~~~~~~~~~g~~~~~~~~e~~ 393 (397) T protein:vir:38 317 SANIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAK--DLPDPEKEP-QQAIQLIQQEGGENDGNNSDERG 393 (397) T ss_pred cccccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC--ccccccccc-cccccccccccCCCCCCCCCCCC Confidence 1222223445777788887776 4789998888876431 110 000000000 00000111111111222222222 Q ss_pred CCCCCC Q lcl|Aclame:pro 487 NNKESE 492 (492) Q Consensus 487 ~~~~~e 492 (492) + ++| T Consensus 394 ~--~~~ 397 (397) T protein:vir:38 394 S--DPE 397 (397) T ss_pred C--CCC Confidence 2 233 No 137 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=98.51 E-value=4.1e-07 Score=55.60 Aligned_cols=377 Identities=13% Similarity=0.108 Sum_probs=154.3 Q ss_pred cccccccccccchHHHHHHHHHHhhhcCCeeecCC------c--hhHHHHHHH-HHh---c-----------cHHHHHHH Q lcl|Aclame:pro 90 DPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT------D--DEVVKRIDE-VLG---N-----------RFDDKLHS 146 (492) Q Consensus 90 ~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~------d--~~~~~~l~~-~~~---n-----------~~~~~~~~ 146 (492) -...+. ..++...+|+..++.+.+-|+.+... + ....+.+.. +.. | .+..+... T Consensus 1 l~~l~~---~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~ 77 (467) T protein:vir:31 1 MAELLE---HNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQT 77 (467) T ss_pred Chhhhh---cCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHH Confidence 000010 24778889999999999888876321 1 111122222 221 2 12345566 Q ss_pred HHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEe-ccee Q lcl|Aclame:pro 147 VLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYE-NGSL 224 (492) Q Consensus 147 ~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 224 (492) +..+.+.+|.||+.+.++..|++ .+..++|..+.+..+.. ++......... |.......+... .+.. T Consensus 78 ~~~~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 146 (467) T protein:vir:31 78 AWTDYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDER---------GFVQLLEEKEK--YFGVAGDRYQTNGNGDL 146 (467) T ss_pred HHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecc---------eeEeecCCcee--eEEeccccceeecccce Confidence 78889999999999999988876 57778888887655432 11111000000 000000000000 0000 Q ss_pred eeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE--EecC- Q lcl|Aclame:pro 225 IPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV--LKNY- 296 (492) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~--~~g~- 296 (492) .............. ...+..=-|++++. ...|.|.+......++....+..-....+...+.|-.+ +.|. T Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~ 224 (467) T protein:vir:31 147 DPVFVDADDGSTGT--SVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAE 224 (467) T ss_pred eeeeeeeccccccc--eeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcC Confidence 00000000000000 01111112344432 22577777665555554444333333344444555444 3442 Q ss_pred -CcccchhhHHhhhh-------------------ccceecCCCCcceeeec------c--cCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 297 -DDQELPEFKRLLRY-------------------YGAIKVSDNGGVDTIQV------E--VPVENSKKYLDELYQKIMLF 348 (492) Q Consensus 297 -~~~~~~~~~~~~~~-------------------~~~~~~~~~~d~~~l~~------~--~~~~~~~~~i~~l~~~i~~~ 348 (492) +.+....++..+.. ...+.+..+.+.+.+.. + .....+....+..++.|+.. T Consensus 225 l~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~ 304 (467) T protein:vir:31 225 LTEKGREEMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKV 304 (467) T ss_pred CCHHHHHHHHHHHHhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHH Confidence 22222222222111 11122233333222211 1 12334566667777788887 Q ss_pred hCCCCCCccccc-cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHH Q lcl|Aclame:pro 349 GQAVDFSSDKFG-SA--PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQ 425 (492) Q Consensus 349 a~~p~~~~~~~~-~~--~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~ 425 (492) =++|..-.+... ++ .+..+....+ ....+.=..+.+...+.+ .++.- ........+++.+......|..+. T Consensus 305 fgVpp~~lG~~~~~~~~s~~e~~~~~f--~~~~l~P~~~~ie~~ln~---~l~~~-~~~~~~~~i~f~~~~l~~~d~~~~ 378 (467) T protein:vir:31 305 HDVPPVIAGVVESGAFSTDAEEQRKEF--AEETIQPKQHDFGELLYE---LVHKQ-GLDAPDWTIEFELAKPDTKLQDVE 378 (467) T ss_pred hCCCHHHcccCCCCCcccCHHHHHHHH--HHHHHHHHHHHHHHHHHH---hhcch-hhccCCceEEEecchhhccCHHHH Confidence 778754332111 11 1111111111 111111111111111111 11100 011122346677778888899999 Q ss_pred HHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 426 VQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 426 ~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ++++.++ .|+++...++++++.-.-++.++.-. .........+...+. ..+.+..+.++.+.| T Consensus 379 ~~~~~~~~~~G~~T~NE~R~~~Gl~pi~d~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 443 (467) T protein:vir:31 379 IASQRVQAMQGLLTVNELRDEFGFEPFPEEHVYGG--ETLVAEVTGGSGPGG--GIGDQIEQLVEDRAD 443 (467) T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCCCCcccccCC--cccccccccccCCCC--cccCcCCCCCCCccc Confidence 9988876 47999999998876521111111000 000000000001111 111111111111111 No 138 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=98.49 E-value=4.7e-07 Score=55.25 Aligned_cols=389 Identities=8% Similarity=0.009 Sum_probs=166.5 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..++.++-...-.......+ -.....+..+..+..... .+ ... .=+.+.-...+|+ T Consensus 1 M~~~~~~f~~~~r~~~~~~~~----------~~~~~~~~~~~g~~~~~~----~v------~~~---~al~~~~v~~~i~ 57 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQVIEL----------NKDDEKLLEWLGISPSTI----SV------KGK---NALKVATVFACIK 57 (429) T ss_pred CchhhhhhcccccCccccccc----------CCChHHHHHHhcCCCCcc----ee------chh---hhhccHHHHHHHH Confidence 223322221000000000000 000011122221111000 00 000 0011222344566 Q ss_pred HHHHhhhcCCeeec--CCc---hhHHH-HHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcc Q lcl|Aclame:pro 109 QKVSYIVGKPIAFK--HTD---DEVVK-RIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPA 176 (492) Q Consensus 109 ~~~~~l~g~~~~~~--~~d---~~~~~-~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p 176 (492) .++.-+.+-|+.+- .++ ..... +...+.. | ....+...+..+.+.+|.+|+++-++..|++ .+..++| T Consensus 58 ~ia~~ia~l~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~ 137 (429) T protein:vir:10 58 ILSESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDA 137 (429) T ss_pred HHHHhhccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcC Confidence 66666666666641 111 11111 1122221 2 2356777788899999999999999998886 6788888 Q ss_pred cceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-- Q lcl|Aclame:pro 177 EQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-- 254 (492) Q Consensus 177 ~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-- 254 (492) ..+.+..++........ ..+|..........+... -|+++++ T Consensus 138 ~~v~v~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~-----------------------------------evih~~~~~ 181 (429) T protein:vir:10 138 SKVTVYIDDVGLLNSKT-KMWYVVNTGGQQRVLKPE-----------------------------------EILHFKNGI 181 (429) T ss_pred ceeEEEEcCcccccccc-eEEEEEccCCeEEEEccc-----------------------------------cEEEecCCC Confidence 88877665422111000 001111111100001111 1344432 Q ss_pred ---ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecCCCC Q lcl|Aclame:pro 255 ---NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVSDNG 320 (492) Q Consensus 255 ---n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~ 320 (492) ...|.|.+......++....+..-....+...+.|-.+++.. +.+..+.++..+. .++++.++++- T Consensus 182 ~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~ 261 (429) T protein:vir:10 182 TLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKVFRENFESMSSGLQNSHRIALMPVGY 261 (429) T ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHHHHHHHHHhccccccCceeecCCCc Confidence 234777787777777666665555555666666666655532 2222222222221 23455555555 Q ss_pred cceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 321 GVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFE 399 (492) Q Consensus 321 d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 399 (492) +++.+........+.+..+..+..|+..-++|..-.+... ++-|. ++.. .......+|.-.++.+.. T Consensus 262 ~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn--~e~~----------~~~f~~~~l~P~~~~ie~ 329 (429) T protein:vir:10 262 QFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNN--IEQQ----------QQQFYTDTLQATLTMYEQ 329 (429) T ss_pred eEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc--HHHH----------HHHHHHHHHHHHHHHHHH Confidence 5555543333344555667777888888888865443221 11111 1111 111122222222222222 Q ss_pred Hhcc-----C--CcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 400 HFDI-----K--GEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQ 468 (492) Q Consensus 400 ~~~~-----~--~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~ 468 (492) .++. . .....+++.+..-+..|..+.++++.++ .|+++...++++++. +++.+.-+-... ....+. T Consensus 330 ~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n---~~~~d~ 406 (429) T protein:vir:10 330 EMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNGN---MLPIDM 406 (429) T ss_pred HHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccc---ccchhh Confidence 2211 1 1112344455566677999999999887 478999888887753 221111100000 000001 Q ss_pred hccccCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 469 LPNLDDGGADSAQQQERSNNKES 491 (492) Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~ 491 (492) .......+.+...+..+.++|++ T Consensus 407 ~~~~~~k~g~~~~~~~~~~~e~~ 429 (429) T protein:vir:10 407 AGQAYLKGGDTNGEVSKEGNEGN 429 (429) T ss_pred ccccccCCCCCCCCCCCCCCCCC Confidence 11111122222223333334444 No 139 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=98.40 E-value=8.3e-07 Score=53.93 Aligned_cols=432 Identities=11% Similarity=0.054 Sum_probs=158.2 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~ 79 (492) |-+. +.+.+.+.+. +..+.-.. ..+... +...+.. ...+.+..+.... ......--..+..|-. .+ T Consensus 1 ~~~~---~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~----~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~---~~ 67 (547) T protein:vir:63 1 MGLF---ESIRLAGVNK-SDAVKHIE-VDDNYS-IAIQQRE----QEQISKAMNNKEVAYSQPVIGSMSANPGFK---TK 67 (547) T ss_pred Cchh---hhhhhhcCCc-cccccccc-cccccc-hhhhhhh----HHHHHHhhcccchhhhchhhheeecccccc---cC Confidence 4433 2233333221 22221110 000000 0000000 1112222111000 0000000111112210 01 Q ss_pred cccccccccccccccc-cc--cccchHHHHHHHHHHhhhc-----------CC--eeec-------CCchhHHHHHHHHH Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPD-DR--MITNFHANLVDQKVSYIVG-----------KP--IAFK-------HTDDEVVKRIDEVL 136 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~-~r--i~~n~~~~ivd~~~~~l~g-----------~~--~~~~-------~~d~~~~~~l~~~~ 136 (492) +.. ......++ .+ ...++...+|+..+..+.+ -+ +++. ..+......++.++ T Consensus 68 ~~~-----~~~~~l~~l~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l 142 (547) T protein:vir:63 68 PSI-----RNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFI 142 (547) T ss_pred Ccc-----CChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHH Confidence 100 00000000 00 1124445555555443321 11 1221 11222222333333 Q ss_pred hc----------cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEcccceEEEecCCCCCceEEEEEeeeecccee Q lcl|Aclame:pro 137 GN----------RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETK 205 (492) Q Consensus 137 ~n----------~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~ 205 (492) .+ .+..+...+..+.+.+|.+|+.+-++.+|++. +..++|..+.++.++.. ......++|+....+.. T Consensus 143 ~~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g-~~~~~~~~y~~~~~~~~ 221 (547) T protein:vir:63 143 EKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADG-KIPDNGNRFVQVIDQKI 221 (547) T ss_pred HhhCCCCCCccchHHHHHHHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCcc-ccccCceEEEEEcCCcE Confidence 21 23456666788899999999999999988864 78889988887765432 11111112211111111 Q ss_pred EEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC--------ccCCCCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 206 VEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN--------NDLEISDIFMYKTLIDAYNRRLS 277 (492) Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n--------n~~~~s~~~~v~~liD~~~~~~s 277 (492) ...+.... |++++. ...|.|.++.....+.....+.. T Consensus 222 ~~~~~~~e-----------------------------------iih~r~n~~~~~~~~~~G~Spi~~~~~~i~~~~~a~~ 266 (547) T protein:vir:63 222 VATFNARE-----------------------------------MAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEA 266 (547) T ss_pred EEEecccc-----------------------------------EEEecccCCCCcccccccccHHHHHHHHHHHHHHHHH Confidence 11111111 122221 22477878777777766655555 Q ss_pred HHHHHHHhcCCce--EEEecC---CcccchhhHHhhh--------hccceecCCCCcceeeeccc--CHHHHHHHHHHHH Q lcl|Aclame:pro 278 DLSNTFKDSNELT--YVLKNY---DDQELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEV--PVENSKKYLDELY 342 (492) Q Consensus 278 ~~~~~~~~~~~~~--l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~--~~~~~~~~i~~l~ 342 (492) -....+...+.|- +.+.|. +.+....++..+. .+++..+. +++++|..... ....+....+..+ T Consensus 267 ~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~-~~g~~~~~l~~~~~d~qfle~~~~~~ 345 (547) T protein:vir:63 267 FNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS-AEDVKFVNMTPSARDMEFEKWLNYLI 345 (547) T ss_pred HHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCccccccccccc-CCCceEEEcCCChhHHHHHHHHHHHH Confidence 5555556555554 444453 2222223333221 12222332 33455544333 3344556666677 Q ss_pred HHHHHHhCCCCCCccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcceeeeEEeC Q lcl|Aclame:pro 343 QKIMLFGQAVDFSSDKFGSA----PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---KGEHKDVDISFN 415 (492) Q Consensus 343 ~~i~~~a~~p~~~~~~~~~~----~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~i~f~ 415 (492) +.|+..=++|.+-.+-.+.+ .++.++... ... ......+..+|.-+++.+...++. ......+.+.|. T Consensus 346 ~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~s--n~e---~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~~~~~~~~f~ 420 (547) T protein:vir:63 346 NVISALYGIDPAEINIPNNGGATGSKGGSLNEG--NSA---EKNQASKNKGLQPLLGFIEDFINKHIVAEFGDKYTFQFV 420 (547) T ss_pred HHHHHHhCCCHHHcCcccccccccccccccchh--hHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEee Confidence 77777777776543311110 001111100 000 001111222222222222211110 111134677888 Q ss_pred CCCCcCHHHHHHHHHH-HhccCChHHHHHhCCC---CCCHHHH---------HHHHHHHHH---HHHHhhcccc--CCCC Q lcl|Aclame:pro 416 YNKVANTELQVQTAQQ-SMGIVSHETVLENHPF---VEDLQAE---------LERIEQEQT---EYNKQLPNLD--DGGA 477 (492) Q Consensus 416 ~~~p~d~~e~~~~~~k-~~g~vs~et~l~~l~~---v~D~~~E---------~~ri~~E~~---~~~~~~~~~~--~~~~ 477 (492) .....+..+.+..... ..|+++.-.+.++++. ++.-+.- .+...++.. ......+... .++. T Consensus 421 ~~~~~~~~~~~~~~~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (547) T protein:vir:63 421 GGDIKSELESVKILAEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNR 500 (547) T ss_pred ccccccHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCCccccchhhccccccccCCC Confidence 7777777776654332 2488998888877643 2211100 011111100 0000100000 0000 Q ss_pred CCCCcCCCCCC------CCC------C Q lcl|Aclame:pro 478 DSAQQQERSNN------KES------E 492 (492) Q Consensus 478 ~~~~~~~~~~~------~~~------e 492 (492) +...+.+++.+ .+. + T Consensus 501 ~~~~~~~~~~~~~~~~~~~~d~~~~~~ 527 (547) T protein:vir:63 501 VSTDVEDIPDGKDTTGDIGKDGQRKDK 527 (547) T ss_pred CCCCCCCCCCCcccCCCcCccccccCc Confidence 00000000000 000 0 No 140 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=98.40 E-value=8.3e-07 Score=53.92 Aligned_cols=434 Identities=11% Similarity=0.048 Sum_probs=157.6 Q ss_pred hhHHHHHHHHHhc---CCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 4 IQLISQVAQALIK---GGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 4 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) +.----+-+||+. +.+..|.-.. .+.-..++..+.. .+.+.+.......-..+-...-..+.+.+ +. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~k~~~~~~~a~~~~~~~~~~~~~~~----~~ 70 (551) T protein:vir:80 1 MKNKLGLFESIRLVGVNKSDAVKHIE--VDDNYSIAIQQRE----QEQISKAMNNKEVAYSQPVIGSMSANPGF----KT 70 (551) T ss_pred CchhhhhHHHhhhccCChhhcccccc--cccceeeeccccc----HHHHHHhhccCcceeecccccceecCccc----cc Confidence 1111112344442 1111111100 0000000001111 11122211110000000000000000000 00 Q ss_pred ccccccccccccccc-cc--cccchHHHHHHHHHHhhh-----------cCCeeecCC---------chhHHHHHHHHHh Q lcl|Aclame:pro 81 KPVDATGAVDPLKPD-DR--MITNFHANLVDQKVSYIV-----------GKPIAFKHT---------DDEVVKRIDEVLG 137 (492) Q Consensus 81 ~~~~~~~~~~~~~~~-~r--i~~n~~~~ivd~~~~~l~-----------g~~~~~~~~---------d~~~~~~l~~~~~ 137 (492) +. ........++ .+ ...+....+|+..+..+. |-+..+... +....+.+..++. T Consensus 71 r~---~~~~~~~l~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~ 147 (551) T protein:vir:80 71 KP---SIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIE 147 (551) T ss_pred Cc---cccChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHH Confidence 00 0000000000 00 012444555555554332 122222211 1112223333332 Q ss_pred --c--------cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEcccceEEEecCCCCCceEEEEEeeeeccceeE Q lcl|Aclame:pro 138 --N--------RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKV 206 (492) Q Consensus 138 --n--------~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~ 206 (492) | .+..+...+..+.+.+|.+|+.+-++.+|++. +..++|..+.++.++.. ......++|+....+... T Consensus 148 ~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g-~~~~~~~~y~~~~~g~~~ 226 (551) T protein:vir:80 148 KTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADG-KIPDNGNRFVQVIDQKIV 226 (551) T ss_pred hcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCcc-ccccCceEEEEEeCCcEE Confidence 1 23346666788899999999999999989864 78899999888765432 111111122221111111 Q ss_pred EEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC--------ccCCCCcHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 207 EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN--------NDLEISDIFMYKTLIDAYNRRLSD 278 (492) Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n--------n~~~~s~~~~v~~liD~~~~~~s~ 278 (492) ..+.... |+++.. ...|.|.++.....+.....+..- T Consensus 227 ~~~~~~e-----------------------------------iiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~ 271 (551) T protein:vir:80 227 ATFNARE-----------------------------------MAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAF 271 (551) T ss_pred EEEcccc-----------------------------------eEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHH Confidence 1111111 222221 124777777777666666555555 Q ss_pred HHHHHHhcCCceEE--EecC---CcccchhhHHhhh--------hccceecCCCCcceeeecc--cCHHHHHHHHHHHHH Q lcl|Aclame:pro 279 LSNTFKDSNELTYV--LKNY---DDQELPEFKRLLR--------YYGAIKVSDNGGVDTIQVE--VPVENSKKYLDELYQ 343 (492) Q Consensus 279 ~~~~~~~~~~~~l~--~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~--~~~~~~~~~i~~l~~ 343 (492) ..+.+...+.|-.+ +.|. +.+....++..+. .+++..+. +++++|.... .....+....+..++ T Consensus 272 ~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~-~~g~~~~~l~~~~~D~qfle~~~~~~~ 350 (551) T protein:vir:80 272 NDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS-AEDVKFVNMTPSARDMEFEKWLNYLIN 350 (551) T ss_pred HHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcccccc-CCCceEEEccCChhHHHHHHHHHHHHH Confidence 55556665656544 4443 2222233333221 12222332 2344554433 344456666777778 Q ss_pred HHHHHhCCCCCCccccccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcceeeeEEeCC Q lcl|Aclame:pro 344 KIMLFGQAVDFSSDKFGSA----PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---KGEHKDVDISFNY 416 (492) Q Consensus 344 ~i~~~a~~p~~~~~~~~~~----~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~i~f~~ 416 (492) .|+..=++|.+-.+-.+.+ ..+.++-.. .... .....+..+|.-+++.+...++. ......+.+.|.. T Consensus 351 ~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~s--n~e~---~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~f~f~~ 425 (551) T protein:vir:80 351 VISALYGIDPAEINIPNNGGATGSKGGSLNEG--NSAE---KNQASKNKGLQPLLGFIEDFINKHIVAEFGDKYTFQFVG 425 (551) T ss_pred HHHHHhcCCHHHcCcccccccccccccccchh--hHHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEeec Confidence 8887778886544311100 001111000 0000 01111122222222222111110 1112346778887 Q ss_pred CCCcCHHHHHHHHHH-HhccCChHHHHHhCCC---CCCHHH---------HHHHHHHHH---HHHHHhhccccC-----C Q lcl|Aclame:pro 417 NKVANTELQVQTAQQ-SMGIVSHETVLENHPF---VEDLQA---------ELERIEQEQ---TEYNKQLPNLDD-----G 475 (492) Q Consensus 417 ~~p~d~~e~~~~~~k-~~g~vs~et~l~~l~~---v~D~~~---------E~~ri~~E~---~~~~~~~~~~~~-----~ 475 (492) ....+.++.+..... ..|+++.-.+.++++. ++.-+. ..+....+. +........... . T Consensus 426 ~~~~~~~~~~~~~~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (551) T protein:vir:80 426 GDIKSELESVKILAEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRV 505 (551) T ss_pred cChhhHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCcchhhhhhccccccCcCCCCC Confidence 777777776654432 2478998888877643 221110 011111110 111111100000 0 Q ss_pred CCCCCCcC----CCCCCCCC-----C Q lcl|Aclame:pro 476 GADSAQQQ----ERSNNKES-----E 492 (492) Q Consensus 476 ~~~~~~~~----~~~~~~~~-----e 492 (492) +++...+. +..+.+++ | T Consensus 506 ~~~~~~~p~~~~~~~~~~~~~~~~~~ 531 (551) T protein:vir:80 506 STDVEDIPDGKDTTGDIGKDGQRKDK 531 (551) T ss_pred CCCCCCCCCccccCCCccccccccCc Confidence 01000000 00111111 1 No 141 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=98.40 E-value=8.3e-07 Score=53.92 Aligned_cols=441 Identities=11% Similarity=0.023 Sum_probs=185.8 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) |+ ...+.....+.+++.+..+-++.+.-..+.+.+.+|..-. +-.. .. ....+...|+..+-+ T Consensus 1 m~--------~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~-----~~~~---~~-~~~~~~~~~~~dst~ 63 (532) T protein:vir:99 1 MA--------EVEKTGFAADGAAAAYNRLKNDRGAYETRAEDCATYTIPS-----VFPS---AT-ADGSTSYTTPWQSIG 63 (532) T ss_pred Cc--------chhhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhc-----ccCC---CC-CcchhhccccccchH Confidence 21 1112222222333333333332222233444455554332 1000 00 111223456677778 Q ss_pred HHHHHHHHHhhhcC--C-----eeecCCch-------------hHHHHH--------HHHHhccHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 104 ANLVDQKVSYIVGK--P-----IAFKHTDD-------------EVVKRI--------DEVLGNRFDDKLHSVLTGASNKG 155 (492) Q Consensus 104 ~~ivd~~~~~l~g~--~-----~~~~~~d~-------------~~~~~l--------~~~~~n~~~~~~~~~~~~~~~~G 155 (492) ...++.+++.|++- | +++...+. ++...| ..+..++|.....++.++..++| T Consensus 64 ~~a~~~LAa~L~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G 143 (532) T protein:vir:99 64 ARGLNNLASKLMLALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERICMNYMESNSFRPTLHAAIKQLLVAG 143 (532) T ss_pred HHHHHHHHHHHHHhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHC Confidence 88888888887642 2 22333222 123222 22344789999999999999999 Q ss_pred eEEEEEEeCCC---CceEEEEEcccceEEEecCCCCCceEEEEEeeeec--------------------cceeEEEEecc Q lcl|Aclame:pro 156 IEWLHPYLDEE---GEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLE--------------------NETKVEYWDKV 212 (492) Q Consensus 156 ~~~~~v~~d~~---g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~--------------------~~~~~~~~~~~ 212 (492) .|.+++..++. ...+++.++-.+. .+-. +..+++...+|..... ....+++|+.. T Consensus 144 ~a~l~~~~~~~~~~~~~~f~~~pl~~y-~v~~-d~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~~~v 221 (532) T protein:vir:99 144 NVLLYIPSTEQVEGQSNAPKLYKLHNF-VVER-DAYDNVLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIYTHV 221 (532) T ss_pred cEeEEecccccccCcccceEEEEcCeE-EEee-CCCCCeeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEEEEE Confidence 99998865432 3446777766553 3333 3456666666543221 01113332211 Q ss_pred eEEEEEEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 213 TVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSN 287 (492) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~ 287 (492) . ...+......................+|..+|++.+. .+.+|+|-.+...+-+..++.+.-.......... T Consensus 222 ~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~ 298 (532) T protein:vir:99 222 Y---RDPEAMVFRSYQEIDGEIVAGTEGEYPLDSCPWIPVRLIKMPNEDYGRSFVEEYLGDLKSLENLYEAIVKMSMISS 298 (532) T ss_pred E---ecCCCCeeEEEEeecCceecccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHc Confidence 0 1001100110000011111111122335567877653 3457999999999999999988777777777777 Q ss_pred CceEEEecCCcccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhH Q lcl|Aclame:pro 288 ELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSG 365 (492) Q Consensus 288 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg 365 (492) .|.+.+.-........+.. .. .+.+..+..++++.+. ...+.......++.++..|...-...... ...+...++ T Consensus 299 ~~~~lv~p~g~~~~~~~~~-~~-~g~~v~g~~~~i~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~-~~d~~r~TA 375 (532) T protein:vir:99 299 KVLFFVNPNGVTQIRRVAK-AN-TGDFVAGRKQDVEVFQLEKYNDFQVAKATADDIEKRLSYAFMLNSAV-QRGGDRVTA 375 (532) T ss_pred CCCceeccccccchhhhcc-CC-CcceecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhcc-cCCCCcccH Confidence 7776653111111111111 11 1223333344555543 23456667777777777764321111111 111234566 Q ss_pred HHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHhcc---CCcceeeeE-EeCCCCCcCHHHHHHHHHH----H Q lcl|Aclame:pro 366 VALEFLYTNLNLKAD-K----LARKAKVAIQELLWFVFEHFDI---KGEHKDVDI-SFNYNKVANTELQVQTAQQ----S 432 (492) Q Consensus 366 ~Al~~~~~~l~~k~~-~----~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~i-~f~~~~p~d~~e~~~~~~k----~ 432 (492) ..+......+..... . ....+..-+.+++.++.+..-. ..+.....+ ++-.++ ..++.++.+.. + T Consensus 376 tEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~iv~~is~L--araq~~~~l~~~~~~l 453 (532) T protein:vir:99 376 EEIRYVAGELEDTLGGVYSLLSQELQLPLVKILLKELQATSKIPNLPKEAVEPAIATGLEAL--GRGHDLNKLNVFIDYM 453 (532) T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhcccceeecchHH--HHHHHHHHHHHHHHHH Confidence 555543333322222 1 1222233333334433332111 112222222 222222 22222222221 1 Q ss_pred hcc-------CChHHHH----HhCCC-CC---CHHHHHHHHHHHHHHHHHhhc-----cccCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 433 MGI-------VSHETVL----ENHPF-VE---DLQAELERIEQEQTEYNKQLP-----NLDDGGADSAQQQERSNNKES 491 (492) Q Consensus 433 ~g~-------vs~et~l----~~l~~-v~---D~~~E~~ri~~E~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 491 (492) +.+ +....++ ..++. .. -.++|++.+.++++..+.... ....+.+.......+.+-++. T Consensus 454 aq~~p~~~d~id~d~~~~~~a~~~GV~~~~i~r~~ee~~~~~~q~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (532) T protein:vir:99 454 IKLAGLQDDDINLLDVKMRLANSLGMDTTGLILTQQDKQAKMAEASTAAGMVTAGQQMGAAGGQAAAAMMQQQAGMPTQ 532 (532) T ss_pred HhhcchhhhhCCHHHHHHHHHHHhCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHhhcCCCCC Confidence 222 2222222 23331 11 234555555544332221111 111111111111222222222 No 142 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=98.40 E-value=8.5e-07 Score=53.86 Aligned_cols=441 Identities=9% Similarity=0.019 Sum_probs=185.4 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) ++. ++. ..+...+..++....+-++.+.-..+.+.+.+|..-. .-... +. .......++..+-+ T Consensus 1 ~~~-~~~------~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~-----~~~~~-~~---~~~~~~~~~~dst~ 64 (535) T protein:vir:94 1 MAS-SQK------REGFAENGAKAVYDALKNDRNSYETRAENCAKYTIPS-----LFPKD-SD---NASTDYTTPWQAVG 64 (535) T ss_pred CCc-hhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-----cCCCC-CC---ccccccCCcccccH Confidence 221 110 1111122223333333222222233444455554321 10000 00 01122335666777 Q ss_pred HHHHHHHHHhhhcC--C----eeecCCch-------------hHHHHHH--------HHHhccHHHHHHHHHHHHHhcCe Q lcl|Aclame:pro 104 ANLVDQKVSYIVGK--P----IAFKHTDD-------------EVVKRID--------EVLGNRFDDKLHSVLTGASNKGI 156 (492) Q Consensus 104 ~~ivd~~~~~l~g~--~----~~~~~~d~-------------~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~ 156 (492) ...++.+++.|++- | +++...+. ++.+.+. .+..++|.....++.++..++|. T Consensus 65 ~~a~~~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~ 144 (535) T protein:vir:94 65 ARGLNNLASKLMLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGN 144 (535) T ss_pred HHHHHHHHHHHHhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCc Confidence 77888887777542 2 22222221 1333332 23347899999999999999999 Q ss_pred EEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc-------------------ceeEEEEecceEEEE Q lcl|Aclame:pro 157 EWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN-------------------ETKVEYWDKVTVNYY 217 (492) Q Consensus 157 ~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~-------------------~~~~~~~~~~~~~~~ 217 (492) |.+++-.+++...+++.++-.+ +.+-.| ..+++...+|.....- ...+++|+.. +. T Consensus 145 a~l~~~~~~~~~~~f~~~pl~~-y~v~~d-~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~v---~~ 219 (535) T protein:vir:94 145 ALLYIPEPEGTYNPMKLYRLSS-YVVQRD-AFGTVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYTHI---YL 219 (535) T ss_pred EeEeeccCcCcccceEEEEcCe-EEEeeC-CCCCeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEEEE---Ee Confidence 9887766554445677776554 344333 4566666665443210 1123333211 11 Q ss_pred EEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE Q lcl|Aclame:pro 218 VYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV 292 (492) Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~ 292 (492) ...+..+..................+|..+|++.+. .+.+|+|-.++..+-+..++.+.-...........|.+. T Consensus 220 ~~~~~~~~~~~e~~g~~~~~~~~~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~~~~l 299 (535) T protein:vir:94 220 DEESGEYLKYEEIDGVEVEGTDASYPVDACPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGL 299 (535) T ss_pred eCCCCcEEEEEEecCeeeccccccCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Confidence 111111111111111111112234567778887653 346799999999999999998877777766666666665 Q ss_pred EecCCcccchhhHHhhhhccceecCCCCcceeeec--ccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHH Q lcl|Aclame:pro 293 LKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQV--EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEF 370 (492) Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~ 370 (492) +.-........+.. ...+.+..+..+++.++.. ..+.......++.++..|...-...... ...+...++..+.. T Consensus 300 v~p~g~~~~~~~~~--~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~-~~d~~rvTAtEV~~ 376 (535) T protein:vir:94 300 VNPAGITQVRRLTK--AQTGDFVSGRPEDISFLQLEKAADFSVARAVSEQIEGRLSYAFMLNSAV-QRTGERVTAEEIRY 376 (535) T ss_pred cccccccchhhccc--CCCceeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhHhhhc-cCCCCCccHHHHHH Confidence 53111111111111 1112333344455555432 2455666777777777664322111111 11223456665555 Q ss_pred HHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHhccCC-cceeeeEEeCCCCCcCHHHHHHHHHH-------Hhcc-- Q lcl|Aclame:pro 371 LYTNLNLKAD-K----LARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYNKVANTELQVQTAQQ-------SMGI-- 435 (492) Q Consensus 371 ~~~~l~~k~~-~----~~~~~~~~l~~~~~li~~~~~~~~-~~~~i~i~f~~~~p~d~~e~~~~~~k-------~~g~-- 435 (492) ....+..... . ....+..-+.+++.++.+..-.+. ...-+++.+..++. .+...+.+.+ ++++ T Consensus 377 r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~g~lP~~p~~~v~~~~vs~la--~l~r~~~~~~l~~~~~~laq~~P 454 (535) T protein:vir:94 377 VASELEDTLGGVYSILSQELQLPMVRVLLKQLQATNQIPELPKEAVEPTISTGME--ALGRGQDLDKLERCIAAWSALAP 454 (535) T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEeehHH--HHHHHHHHHHHHHHHHHHHhhCh Confidence 3333322221 1 112222223333333332211111 11124444433222 2222222222 1221 Q ss_pred ------CChHHHHHhC---CCCC-----CHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 436 ------VSHETVLENH---PFVE-----DLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 436 ------vs~et~l~~l---~~v~-----D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +....++..+ -+|+ -.++|++++.+++++..++.......++..+. ..+.+.++. T Consensus 455 ~~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~eev~~~~~q~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~ 523 (535) T protein:vir:94 455 MQGDPDINIATIKLRIANAIGIDTSGILKTPEEKQQEMAEAAQGTAMQNAAASAGAGAGT--MATASPENM 523 (535) T ss_pred HHhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccccChHHH Confidence 2222222211 1122 13456665555544333222111111111100 001111110 No 143 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=98.38 E-value=9.3e-07 Score=53.66 Aligned_cols=402 Identities=9% Similarity=-0.020 Sum_probs=155.6 Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc------cccccccchHHHHHHHHHHhh Q lcl|Aclame:pro 41 KPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLK------PDDRMITNFHANLVDQKVSYI 114 (492) Q Consensus 41 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~------~~~ri~~n~~~~ivd~~~~~l 114 (492) -++.+.-.+.+.++.+.....|.- +..--.|- -+...+........... .-+| ....++.||+..++-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~-l~~~~~gl---g~~r~~~~~~~g~~~~~~~~~l~~~Yr-~~~ia~~iVd~~~d~~ 75 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMG-LMVPTMGL---DNKRHSAWCEYGFPELVTYENLYSLYR-RGGIAHGAVEKLVGKC 75 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHH-HHHHHhcC---CcccchhhhhcCCcccCCHHHHHHHHh-cCchhHHHHHhhhhhh Confidence 111111122222222221111100 01011110 00000000000000000 0011 2356778999998877 Q ss_pred hcCCeeecC-Cchh-------HHHHHHHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCC Q lcl|Aclame:pro 115 VGKPIAFKH-TDDE-------VVKRIDEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDK 186 (492) Q Consensus 115 ~g~~~~~~~-~d~~-------~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~ 186 (492) +-+.+.+.. .+.+ ....++.+..+++...+.++.+.+..+|.+++++-.+ +|+..-..+.+. T Consensus 76 ~~~~~~i~~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~i~i~v~-d~~~l~~Pl~~~--------- 145 (449) T protein:vir:10 76 WQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIR-DEKDWNLPATKG--------- 145 (449) T ss_pred hhcCcccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEEEec-CCCCCCcccccC--------- Confidence 655443432 2211 1222333444566677888888888999988887654 233211111111 Q ss_pred CCCceEEEEEeeeec--------cceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCC Q lcl|Aclame:pro 187 EHEELEAFIRMYKLE--------NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLE 258 (492) Q Consensus 187 ~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~ 258 (492) +.+..+.-+|... +-..-.++.+ .+|.+... ..+........|.--.+.++..+ ..| T Consensus 146 --~~i~~i~v~~~~~i~~~~~~~dp~sp~yg~P---~~y~v~~~--------~~g~~~~~~~iH~SRl~~~~~~~--~~g 210 (449) T protein:vir:10 146 --RGLQKVSVSWAGSLKVAEWDTGINSKTYGQP---KLWKYTER--------LPNGSSRRVDIHPDRVFILGDYS--EDA 210 (449) T ss_pred --cceeeEEeeccccCChhhhhcCCCCCCCCCc---eEEEEeee--------ccCCCccceeeccceeEeecCCC--CCC Confidence 1111111111100 0000011111 11111100 00011111223433333332211 225 Q ss_pred CCcHHHHHHHHHHHHHHHHH-----HHHHHHhcCCce---------EEEecCCcccch-hhHHhh----hhccceecCCC Q lcl|Aclame:pro 259 ISDIFMYKTLIDAYNRRLSD-----LSNTFKDSNELT---------YVLKNYDDQELP-EFKRLL----RYYGAIKVSDN 319 (492) Q Consensus 259 ~s~~~~v~~liD~~~~~~s~-----~~~~~~~~~~~~---------l~~~g~~~~~~~-~~~~~~----~~~~~~~~~~~ 319 (492) .|.++++-.-+-.++.+.-. +.+..+...... ....+.+.+... .+...+ +....+.+.++ T Consensus 211 ~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~ 290 (449) T protein:vir:10 211 IGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDVLMTTQG 290 (449) T ss_pred hhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhccchheeecCC Confidence 56666543322223332111 112111111000 001121222111 111111 11123334455 Q ss_pred CcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcc--cccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 320 GGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSD--KFGS-APSGVALEFLYTNLNLKADKLARKAKVAIQELLWF 396 (492) Q Consensus 320 ~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~--~~~~-~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~l 396 (492) ++ |.+.+.+.......++...+.+...+++|-.-+- +-|| |.+++ ++. | ...+..++..+...|++++.+ T Consensus 291 ~d--~~~~~~~~sgl~d~l~~~~q~iaaa~~IP~t~L~Gqsp~glnst~D-~~n-y---yd~i~~~Q~~l~p~le~l~~~ 363 (449) T protein:vir:10 291 AT--VTPLVTSVADPTATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKY-F---NARCQSRRVDLSFEIEDFCDK 363 (449) T ss_pred cc--eEEEecccCChhHHHHHHHHHHHHHhCCCeeeeeccCccccccchh-HHH-H---HHHHHHHHHhhhHHHHHHHHH Confidence 55 4445566778888888888888888888854221 1122 33333 333 3 333344455689999999988 Q ss_pred HHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCC Q lcl|Aclame:pro 397 VFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGG 476 (492) Q Consensus 397 i~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~ 476 (492) ++...-...+ .++.|.|++-...+..|.|+...+.+...+........+-+ ++ .|+.. .. ...+. ++ T Consensus 364 l~~s~~g~~~-~d~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~~~-~~-~EiR~-------~~-~~~~~--~~ 430 (449) T protein:vir:10 364 LIELKIIDAV-AKKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAF-SR-EEIRT-------AA-GYDND--DE 430 (449) T ss_pred HHHhhcCCCC-CceeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccCCc-CH-HHHHH-------Hh-cccCC--CC Confidence 7654322222 37899999999999999988877654322111100011111 11 12211 11 11111 11 Q ss_pred CCCCCcCCCCCCCCCC Q lcl|Aclame:pro 477 ADSAQQQERSNNKESE 492 (492) Q Consensus 477 ~~~~~~~~~~~~~~~e 492 (492) ....++++.+++++.+ T Consensus 431 ~~~~~e~~de~~~~~d 446 (449) T protein:vir:10 431 EPLGEEDGDEEDKATD 446 (449) T ss_pred CCCCCCCCccccccCC Confidence 1111122222222222 No 144 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=98.38 E-value=9.3e-07 Score=53.64 Aligned_cols=375 Identities=13% Similarity=0.068 Sum_probs=170.2 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~ 122 (492) +.+.+++++--........-...+..+|-|..-... .. ... +.-+........|+..++-+.+-|+.+- T Consensus 1 m~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------v~~---~~al~~~~v~~~i~~Ia~~ia~l~~~~~ 69 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHEDGFNNILLNMFGGRKTASG--ER------VSE---SNSLVQPDIFACVNVLSDDIAKLPIHTY 69 (416) T ss_pred CccchhcccccCccccCccchhHHHHhhcCcccccC--ce------ech---hhhhccHHHHHHHHHHHHhhhhCceEEE Confidence 222222211100000011112233455544321000 00 000 0111223344567777777766676541 Q ss_pred -CCch---hH--HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCc Q lcl|Aclame:pro 123 -HTDD---EV--VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEE 190 (492) Q Consensus 123 -~~d~---~~--~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~ 190 (492) ..+. .. ......++. | ....+...+..+.+.+|.||+++-++..|.+ .+..++|..+-++.++.. +. T Consensus 70 ~~~~~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~-~~ 148 (416) T protein:vir:12 70 KRTDGGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTT-GM 148 (416) T ss_pred EecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCC-cE Confidence 1111 00 112222322 2 2346677788899999999999999888876 477889988877665432 11 Q ss_pred eEEEEEeeeec-cceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----CccCCCCcHHHH Q lcl|Aclame:pro 191 LEAFIRMYKLE-NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----NNDLEISDIFMY 265 (492) Q Consensus 191 ~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~~~s~~~~v 265 (492) + +|... ++..++ +.... |++++ +...|.|.++.. T Consensus 149 ~-----~~~~~~~g~~~~-~~~~e-----------------------------------iih~~~~~~~~~~G~s~i~~~ 187 (416) T protein:vir:12 149 L-----WYQTVLNGKAIE-LYDYE-----------------------------------VLHFKGLSTDGIHGKSPIGVV 187 (416) T ss_pred E-----EEEEecCCeEEE-ecCcc-----------------------------------EEEecCcCCCCcccccHHHHH Confidence 1 11110 111000 01111 11111 123577778777 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHh----hhhccceecCCCCcceeeecccCHHHHHHHH Q lcl|Aclame:pro 266 KTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRL----LRYYGAIKVSDNGGVDTIQVEVPVENSKKYL 338 (492) Q Consensus 266 ~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~----~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i 338 (492) ...++....+..-..+.+...+.|-.++.-. +.+..+.++.. ...++++.++++.+++.++.......+.+.. T Consensus 188 ~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~ 267 (416) T protein:vir:12 188 REHIGAQAAATKYNAKLYKNEATPRGILKVPAFLDEKPKENVRKEWKRVNKVENIAIIDYGLEYQSISMPLQEAQFVESM 267 (416) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHHHHHHHHHHHHHHhcCCCeeecCCCceEEEccCChhhHHHHHHH Confidence 7777766666555566667667676665532 22222223222 2334555666665555554433444455666 Q ss_pred HHHHHHHHHHhCCCCCCccccc-cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CC---ccee Q lcl|Aclame:pro 339 DELYQKIMLFGQAVDFSSDKFG-SAPS-GVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI----KG---EHKD 409 (492) Q Consensus 339 ~~l~~~i~~~a~~p~~~~~~~~-~~~S-g~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~----~~---~~~~ 409 (492) +..+..|+..-++|..-.+... ++-| .+... ...+..+|.-.++.+...+.. .. .... T Consensus 268 ~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~-------------~~f~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~ 334 (416) T protein:vir:12 268 KFNKAQISMIYKVPLHKLNELDKATFSNIEHQS-------------IEYVRNTLQPWIVNFEQELNVKLFLDHDQKSGHY 334 (416) T ss_pred HHHHHHHHHHhCCCHHHhCCccCCCcccHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhcCchhhcCCce Confidence 7777788877778765443221 1111 11111 112222333333333222211 11 1234 Q ss_pred eeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHHHHHHH---HHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 410 VDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQAELERI---EQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 410 i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~E~~ri---~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) +++.+..-+..|..+.++++.++. |+++.-.++++++. +++.+.-+... ..+.....+. ...++ T Consensus 335 i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~n~~~~~~~~~~~~---~~~~~------ 405 (416) T protein:vir:12 335 VKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDKYISSLNYVFLDFLEEYQR---LKAGG------ 405 (416) T ss_pred EEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccchhhc---ccccc------ Confidence 556666778889999999988874 78998888887753 22211110000 0000000000 00000 Q ss_pred CCCCCCCCCC Q lcl|Aclame:pro 483 QERSNNKESE 492 (492) Q Consensus 483 ~~~~~~~~~e 492 (492) ..+.++..+| T Consensus 406 ~~~gge~~~~ 415 (416) T protein:vir:12 406 AMKGGDNKNE 415 (416) T ss_pred ccCCCCCcCC Confidence 0111111111 No 145 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=98.37 E-value=1e-06 Score=53.44 Aligned_cols=439 Identities=10% Similarity=0.031 Sum_probs=191.5 Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 28 QTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLV 107 (492) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 107 (492) |.+ +....-+.+.+.+..+-++.+.-..+.+.+.+|..-. +-... .. .......++..+-+...+ T Consensus 1 ~~~------~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~-----~~~~~-~~---~~~~~~~~~~dst~~~a~ 65 (522) T protein:vir:94 1 MAE------REGFAAEGAKAVYDRLKNGRQPYETRAQNCAAVTIPS-----LFPKE-SD---NSSTEYTTPWQAVGARCL 65 (522) T ss_pred Ccc------cchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-----ccCCC-CC---cccccccccccccHHHHH Confidence 101 1222223333333333332222233444455554331 11000 00 011122356677788888 Q ss_pred HHHHHhhhcC--C----eeecCCc-------------hhHHHHHH--------HHHhccHHHHHHHHHHHHHhcCeEEEE Q lcl|Aclame:pro 108 DQKVSYIVGK--P----IAFKHTD-------------DEVVKRID--------EVLGNRFDDKLHSVLTGASNKGIEWLH 160 (492) Q Consensus 108 d~~~~~l~g~--~----~~~~~~d-------------~~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~~~~~ 160 (492) +.+++.|++- | +++...+ .++.+.++ .+..++|.....++.++..++|.|.++ T Consensus 66 ~~Las~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~ 145 (522) T protein:vir:94 66 NNLAAKLMLALFPQSPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVSGNCLLY 145 (522) T ss_pred HHHHHHHHhhcCCCCcccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEe Confidence 8888877642 2 1222111 11222222 234468999999999999999999988 Q ss_pred EEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeecc------------------ceeEEEEecceEEEEEEec Q lcl|Aclame:pro 161 PYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN------------------ETKVEYWDKVTVNYYVYEN 221 (492) Q Consensus 161 v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~~~~~~~~~~~ 221 (492) +-.+..|.+ .++.++-.+ +.+-.| ..+++...+|..+..- ...+++++.. .... T Consensus 146 ~~~~~~~~~~~~~~~pl~~-y~v~~d-~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v-----~~~~ 218 (522) T protein:vir:94 146 IPEPEQGTYSPMRMYRLVS-YVVQRD-AFGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHI-----YRQD 218 (522) T ss_pred eeccCCCceeeEEEEEcce-EEEeeC-CCcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEE-----EeeC Confidence 876665543 466666555 344333 4566666665443210 1223332211 1111 Q ss_pred ceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC Q lcl|Aclame:pro 222 GSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY 296 (492) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~ 296 (492) +....................+|..+|++.+. ++.+|+|-.+...+-+..++.+.-......+....|.+.+.-. T Consensus 219 ~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~ 298 (522) T protein:vir:94 219 DEYLRYEEVEGIEVTGTDGSYPLTACPYIPVRMVRLDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVNPN 298 (522) T ss_pred CceeEEeeccCceecccCCCCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeccc Confidence 11111111111111111222356778877653 3467999999999999999999999999999999999876421 Q ss_pred CcccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHH Q lcl|Aclame:pro 297 DDQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTN 374 (492) Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~ 374 (492) .......+.. ... +.+..+..++++.+. ...+.......++.++..|...-....... ..+...++..+...... T Consensus 299 g~~~~~~~~~-~~~-g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~~~~-~~~~r~TAtEV~~r~~E 375 (522) T protein:vir:94 299 GITQPRRLNK-AAT-GEFVAGRVEDINFLQLTKGQDFTIAKSVADAIEQRLGWAFLLNSAVQ-RNAERVTAEEIRYVAGE 375 (522) T ss_pred ccccchheec-cCC-ceeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhhcc-CCCccccHHHHHHHHHH Confidence 1111111111 111 233334445566543 234566677778777777754322211111 11234566555543333 Q ss_pred HHHHHH-H----HHHHHHHHHHHHHHHHHHHhccCC-cceeeeEEeCCCCCcC-HHHHHHHHHHHhc---cCChH----- Q lcl|Aclame:pro 375 LNLKAD-K----LARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYNKVAN-TELQVQTAQQSMG---IVSHE----- 439 (492) Q Consensus 375 l~~k~~-~----~~~~~~~~l~~~~~li~~~~~~~~-~~~~i~i~f~~~~p~d-~~e~~~~~~k~~g---~vs~e----- 439 (492) +..... . ....+..-+.+++.++.+..-.+. ....+++.+..++..- ..+.++.+....| .++.+ T Consensus 376 ~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~v~~~s~La~~qr~~~~~~l~~~~~~ia~l~P~~~~~~ 455 (522) T protein:vir:94 376 LEATLGGVYSVQSQELQLPIVRVLMNQLQSAGMIPDLPKEAVEPTVSTGLEALGRGQDLEKLTQAVNMMTGLQPLSQDPD 455 (522) T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccEEeeEecHHHHHHHHHHHHHHHHHHHHHHhccchhhhhc Confidence 332222 1 122222223333333332222211 1123566665443321 1111222211111 12222 Q ss_pred ----HH----HHhCCC-CCC---HHHHHHHHHHHHHHHHHh--hccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 440 ----TV----LENHPF-VED---LQAELERIEQEQTEYNKQ--LPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 440 ----t~----l~~l~~-v~D---~~~E~~ri~~E~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .+ ...+|. ... .++|++.+.++++..... .......+...... .+...+... T Consensus 456 id~d~~~~~~a~~~Gv~~~~ivr~~ee~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~ 521 (522) T protein:vir:94 456 INLPTLKLRLLNALGIDTAGLLLTQDEKIQRMAEQSSQQAVVQGASAAGANMGAAVG-QGAGEDMAQ 521 (522) T ss_pred CCHHHHHHHHHHHcCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccchhhhc Confidence 22 223332 111 245555555443322111 11111111111000 011111000 No 146 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=98.36 E-value=1e-06 Score=53.37 Aligned_cols=373 Identities=10% Similarity=0.009 Sum_probs=163.5 Q ss_pred HHHhcCCCccc---ccccccc-----------ccc-----ccc-----------------ccccccccccchHHHHHHHH Q lcl|Aclame:pro 67 QEYYEQRPDIV---KEPKPVD-----------ATG-----AVD-----------------PLKPDDRMITNFHANLVDQK 110 (492) Q Consensus 67 ~~YY~G~~~i~---~~~~~~~-----------~~~-----~~~-----------------~~~~~~ri~~n~~~~ivd~~ 110 (492) .+||+-+.-.+ .++.... .+. ... ...+..-+.+.=.-..|+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~I 80 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMI 80 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHH Confidence 23333321111 0000000 000 000 00000000001111245555 Q ss_pred HHhhhcCCeeecCCchh--HHHHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEE Q lcl|Aclame:pro 111 VSYIVGKPIAFKHTDDE--VVKRIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPI 182 (492) Q Consensus 111 ~~~l~g~~~~~~~~d~~--~~~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i 182 (492) ++-+..-|+.+.-+... .......+.. |. ...+...+....+.+|.||+.+.++..|++ .+..++|..+.+. T Consensus 81 a~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~ 160 (441) T protein:vir:79 81 ASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELK 160 (441) T ss_pred HHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEE Confidence 55555567665322111 1112222322 32 245666778889999999999999998986 5888999999887 Q ss_pred ecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC----ccCC Q lcl|Aclame:pro 183 WTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----NDLE 258 (492) Q Consensus 183 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n~~~ 258 (492) .++. +.+.+.+.............+.... |++++. ...| T Consensus 161 ~d~~--g~~~~~~~~~~~~~~~~~~~~~~~d-----------------------------------vih~k~~~~dg~~G 203 (441) T protein:vir:79 161 SDAR--GRLYYFHQRIDSNGNNIERNVKFED-----------------------------------MLDIKFYSLDGING 203 (441) T ss_pred ECCC--ccEEEEEEEeccCCceeEEEEcccc-----------------------------------EEEeccCCCCCccc Confidence 7642 3332221111111111001111111 122221 2247 Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe--cCC-cccc-hhhHHhh--------hhccceecCCCCcceeee Q lcl|Aclame:pro 259 ISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK--NYD-DQEL-PEFKRLL--------RYYGAIKVSDNGGVDTIQ 326 (492) Q Consensus 259 ~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~--g~~-~~~~-~~~~~~~--------~~~~~~~~~~~~d~~~l~ 326 (492) .|.++.....++....+..-..+.+...+.|-.++. |.. .++. +..+... ..++++.++++.+.+.++ T Consensus 204 ~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~ 283 (441) T protein:vir:79 204 LSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLE 283 (441) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEcc Confidence 787777776666555544445555566666666554 432 1111 1222211 123455666665555555 Q ss_pred cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---- Q lcl|Aclame:pro 327 VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD---- 402 (492) Q Consensus 327 ~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~---- 402 (492) .......+.+..+..+..|+..=++|..-.+....+.|....... |...|.-.+..+...++ T Consensus 284 ~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~--------------~~~tl~P~~~~ie~eln~kl~ 349 (441) T protein:vir:79 284 VDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLD--------------YLSTLKPYITCVCAELNFKFN 349 (441) T ss_pred CChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--------------HHHHHHHHHHHHHHHHhhhcc Confidence 444444556666777777888778876544322222221111111 11122222222211111 Q ss_pred cCCcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCC Q lcl|Aclame:pro 403 IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGAD 478 (492) Q Consensus 403 ~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 478 (492) .......+++.+..-+-.|..+.++.+.++ .|+++...+.++++. +++.+..+-.+..-- ...+.... ...... T Consensus 350 ~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~-~~~~~~~~-~~~~~~ 427 (441) T protein:vir:79 350 DEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNH-VNIELVDE-YQMNKS 427 (441) T ss_pred ccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccc-cccccccc-cccccc Confidence 111123344444555667888888888876 579999888887654 333222111110000 00000000 111111 Q ss_pred CCCcCCCCCCCCCC Q lcl|Aclame:pro 479 SAQQQERSNNKESE 492 (492) Q Consensus 479 ~~~~~~~~~~~~~e 492 (492) ...+....+++++| T Consensus 428 ~~~~~~~kgGe~~e 441 (441) T protein:vir:79 428 RATDKKLKGGEENE 441 (441) T ss_pred cccccccCCCCCCC Confidence 22233345555566 No 147 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=98.36 E-value=1e-06 Score=53.37 Aligned_cols=373 Identities=10% Similarity=0.009 Sum_probs=163.5 Q ss_pred HHHhcCCCccc---ccccccc-----------ccc-----ccc-----------------ccccccccccchHHHHHHHH Q lcl|Aclame:pro 67 QEYYEQRPDIV---KEPKPVD-----------ATG-----AVD-----------------PLKPDDRMITNFHANLVDQK 110 (492) Q Consensus 67 ~~YY~G~~~i~---~~~~~~~-----------~~~-----~~~-----------------~~~~~~ri~~n~~~~ivd~~ 110 (492) .+||+-+.-.+ .++.... .+. ... ...+..-+.+.=.-..|+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~I 80 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMI 80 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHH Confidence 23333321111 0000000 000 000 00000000001111245555 Q ss_pred HHhhhcCCeeecCCchh--HHHHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEE Q lcl|Aclame:pro 111 VSYIVGKPIAFKHTDDE--VVKRIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPI 182 (492) Q Consensus 111 ~~~l~g~~~~~~~~d~~--~~~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i 182 (492) ++-+..-|+.+.-+... .......+.. |. ...+...+....+.+|.||+.+.++..|++ .+..++|..+.+. T Consensus 81 a~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~ 160 (441) T protein:vir:94 81 ASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELK 160 (441) T ss_pred HHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEE Confidence 55555567665322111 1112222322 32 245666778889999999999999998986 5888999999887 Q ss_pred ecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC----ccCC Q lcl|Aclame:pro 183 WTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----NDLE 258 (492) Q Consensus 183 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n~~~ 258 (492) .++. +.+.+.+.............+.... |++++. ...| T Consensus 161 ~d~~--g~~~~~~~~~~~~~~~~~~~~~~~d-----------------------------------vih~k~~~~dg~~G 203 (441) T protein:vir:94 161 SDAR--GRLYYFHQRIDSNGNNIERNVKFED-----------------------------------MLDIKFYSLDGING 203 (441) T ss_pred ECCC--ccEEEEEEEeccCCceeEEEEcccc-----------------------------------EEEeccCCCCCccc Confidence 7642 3332221111111111001111111 122221 2247 Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe--cCC-cccc-hhhHHhh--------hhccceecCCCCcceeee Q lcl|Aclame:pro 259 ISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK--NYD-DQEL-PEFKRLL--------RYYGAIKVSDNGGVDTIQ 326 (492) Q Consensus 259 ~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~--g~~-~~~~-~~~~~~~--------~~~~~~~~~~~~d~~~l~ 326 (492) .|.++.....++....+..-..+.+...+.|-.++. |.. .++. +..+... ..++++.++++.+.+.++ T Consensus 204 ~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~ 283 (441) T protein:vir:94 204 LSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLE 283 (441) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEcc Confidence 787777776666555544445555566666666554 432 1111 1222211 123455666665555555 Q ss_pred cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---- Q lcl|Aclame:pro 327 VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD---- 402 (492) Q Consensus 327 ~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~---- 402 (492) .......+.+..+..+..|+..=++|..-.+....+.|....... |...|.-.+..+...++ T Consensus 284 ~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~--------------~~~tl~P~~~~ie~eln~kl~ 349 (441) T protein:vir:94 284 VDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLD--------------YLSTLKPYITCVCAELNFKFN 349 (441) T ss_pred CChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--------------HHHHHHHHHHHHHHHHhhhcc Confidence 444444556666777777888778876544322222221111111 11122222222211111 Q ss_pred cCCcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCC Q lcl|Aclame:pro 403 IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGAD 478 (492) Q Consensus 403 ~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 478 (492) .......+++.+..-+-.|..+.++.+.++ .|+++...+.++++. +++.+..+-.+..-- ...+.... ...... T Consensus 350 ~~~~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~-~~~~~~~~-~~~~~~ 427 (441) T protein:vir:94 350 DEYVNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNH-VNIELVDE-YQMNKS 427 (441) T ss_pred ccccCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccc-cccccccc-cccccc Confidence 111123344444555667888888888876 579999888887654 333222111110000 00000000 111111 Q ss_pred CCCcCCCCCCCCCC Q lcl|Aclame:pro 479 SAQQQERSNNKESE 492 (492) Q Consensus 479 ~~~~~~~~~~~~~e 492 (492) ...+....+++++| T Consensus 428 ~~~~~~~kgGe~~e 441 (441) T protein:vir:94 428 RATDKKLKGGEENE 441 (441) T ss_pred cccccccCCCCCCC Confidence 22233345555566 No 148 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=98.25 E-value=2e-06 Score=51.82 Aligned_cols=423 Identities=10% Similarity=0.054 Sum_probs=189.9 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcC--C-- Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGK--P-- 118 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~--~-- 118 (492) +.+++....+-.+.+.-..+.+.+.+|..-. +-... ... ....+...++..+-+...++.+++.|++- | T Consensus 1 m~~~~r~~~L~~~R~~~e~~w~e~~~~tlP~-----~~~~~-~~~-~~~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~ 73 (522) T protein:vir:10 1 MKARERYNQLTTARQMFLDKAVECSELTLPY-----LIDDD-ISS-RPNHKSLTVPWQSVGAKCCVTLAAKLMLAVLPPQ 73 (522) T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhhhc-----ccCCC-CCC-CcccccccccccchHHHHHHHHHHHHHHhhcCCC Confidence 4455555555444444444445555554321 11110 000 01112234566777788888888777542 2 Q ss_pred ---eeecCCchh------------HHHHH--------HHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEc Q lcl|Aclame:pro 119 ---IAFKHTDDE------------VVKRI--------DEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVP 175 (492) Q Consensus 119 ---~~~~~~d~~------------~~~~l--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~ 175 (492) +++...+.+ +.+.+ ..+..++|.....++.++..++|.|.++ .++++ +++++ T Consensus 74 ~~WF~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly--~~~~~---~~~~p 148 (522) T protein:vir:10 74 TSFFKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASNDRVAVHQALKHLIVGGNALIF--MGKDG---LKTFP 148 (522) T ss_pred CccccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCceeEE--EcCCC---ceEEE Confidence 233322211 12222 2234468899999999999999998855 45554 44554 Q ss_pred ccceEEEecCCCCCceEEEEEeeeec----------------------cceeEEEEecceEEEEEEecceeeeccccccc Q lcl|Aclame:pro 176 AEQGIPIWTDKEHEELEAFIRMYKLE----------------------NETKVEYWDKVTVNYYVYENGSLIPDYSNNLE 233 (492) Q Consensus 176 p~~~~~i~d~~~~~~~~~~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (492) -.+ +.+-.| ..+.+...+|.+... ....+++++.. +...+.+........... T Consensus 149 l~~-y~v~~d-~~G~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~~v---~p~~~~~~~~~~~~~~~~ 223 (522) T protein:vir:10 149 LTR-YVINRD-GDGNVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYTYV---KLDKSSGRWVWHQEAFDK 223 (522) T ss_pred cce-EEEeeC-CCCCeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEEEE---EeeccCCceEEEEccCCc Confidence 444 334333 456666666543321 01112333211 111111111111111111 Q ss_pred cccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhh Q lcl|Aclame:pro 234 NSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLL 308 (492) Q Consensus 234 ~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 308 (492) .........++..+|++.+. .+.+|+|-.+...+-+..++.+.-......+....|.+.+.-........+.. T Consensus 224 ~~~~~~s~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~~~~~~~a~~p~~lv~~~~~~~~~~l~~-- 301 (522) T protein:vir:10 224 IIPDSRSTAPKNASPWLPLRFNTVDGEDYGRGRVEEFLGDLKSLDGLSQSLIEGAAAASKVVFLVSPSSTTKPATIAK-- 301 (522) T ss_pred cccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccccccccccccC-- Confidence 11111223466778887653 34679999999999999999998888888899999988864222222112111 Q ss_pred hhccceecCCCCcceeeec--ccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHH----H- Q lcl|Aclame:pro 309 RYYGAIKVSDNGGVDTIQV--EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKAD----K- 381 (492) Q Consensus 309 ~~~~~~~~~~~~d~~~l~~--~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~----~- 381 (492) ...+.+..+..+++..+.. ..+.......++.++..|...-...+ ..-+...++..+......+..... + T Consensus 302 ~~~~~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~ri~~aFl~~~---~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl 378 (522) T protein:vir:10 302 AGNGAIVQGRPEDVAVIQVGKTADFSTAANMATAIEKRLLEAFLVMN---VRNAERVTAEEVRLTQLELEQQLGGIFSLL 378 (522) T ss_pred CCCcceecCCCccceeecccccccchHHHHHHHHHHHHHHHHHhhcc---CCCCCCCCHHHHHHHHHHHHHHhhHHHHHH Confidence 1122333445556665542 34566667777777777765322111 112344566666554333333222 1 Q ss_pred HHHHHHHHHHHHHHHHHHHhccC---Ccc-eeeeEEeCCCCCcCHHHHHHHHHHH----hccCChHHHHH---------- Q lcl|Aclame:pro 382 LARKAKVAIQELLWFVFEHFDIK---GEH-KDVDISFNYNKVANTELQVQTAQQS----MGIVSHETVLE---------- 443 (492) Q Consensus 382 ~~~~~~~~l~~~~~li~~~~~~~---~~~-~~i~i~f~~~~p~d~~e~~~~~~k~----~g~vs~et~l~---------- 443 (492) ....+..-+.+.+.++.+..-.+ .+. ....|++..++- .++.++.+... +.++..+.++. T Consensus 379 ~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~~v~~is~La--raq~~~~l~~~~~~i~~~~~p~~~~~~id~d~~~~~ 456 (522) T protein:vir:10 379 VIEFLIPYLNRTLLVLQRSNQIPKLPKDIVRPTIVAGVNALG--RGQDRESLTAFVGTIAQTLGPEALMQYLNPLEAIKR 456 (522) T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccchhHHH--HHHHHHHHHHHHHHHHHhhCchhhhhcCCHHHHHHH Confidence 22333334444444444322111 111 112233333332 22222222221 11222233322 Q ss_pred ---hCCCCC-----CHHHHHHHHHHHHHHHHHhhccc------cC-CCCCC-----CCcCCCCCCCC Q lcl|Aclame:pro 444 ---NHPFVE-----DLQAELERIEQEQTEYNKQLPNL------DD-GGADS-----AQQQERSNNKE 490 (492) Q Consensus 444 ---~l~~v~-----D~~~E~~ri~~E~~~~~~~~~~~------~~-~~~~~-----~~~~~~~~~~~ 490 (492) .++ |+ -.++|++.+++++++.+.+.... .+ ...++ .-++.++...| T Consensus 457 ~a~~~G-vp~~~ivrt~eev~~~~q~~q~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (522) T protein:vir:10 457 LAAAQG-IDVLNLVKTEQQLAEEQQAAQQQAAQQSLVDQAGQMTGSPLMDPTKNPQLMDEEQPPMEE 522 (522) T ss_pred HHHHhC-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccHHHHHHhCCCCCC Confidence 222 22 12455555544433322111111 00 00010 11122222222 No 149 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=98.24 E-value=2.1e-06 Score=51.66 Aligned_cols=425 Identities=9% Similarity=0.062 Sum_probs=179.6 Q ss_pred HHHHHHHHHHHHHH-H---HHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcC--C Q lcl|Aclame:pro 45 LEEMIVRYIKQHLE-K---LPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGK--P 118 (492) Q Consensus 45 ~~~~l~~~i~~~~~-~---~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~--~ 118 (492) .++.+.+.++.... | ..+.+.+.+|..-. +-.. .+. .......++..+-+...++.+++.|++- | T Consensus 1 m~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~-----~~~~-~~~---~~~~~~~~~~dst~~~a~~~Laa~l~~~ltp 71 (555) T protein:vir:17 1 MKHSAQAKYMMLRADREDYLDSGRQSARLTLPY-----ILTD-EGH---VQGGYLPTPWQSVGSKGVNVLASKLMLSLFP 71 (555) T ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHhccc-----ccCC-CCC---cccccccccccccHHHHHHHHHHHHHHhhcC Confidence 23334444444433 2 33344445554321 1110 000 1112234566777888888888877642 2 Q ss_pred -----eeecCCch---------hHHHHHH------------HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEE Q lcl|Aclame:pro 119 -----IAFKHTDD---------EVVKRID------------EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLF 172 (492) Q Consensus 119 -----~~~~~~d~---------~~~~~l~------------~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~ 172 (492) +++...+. +....++ .+..++|.....++.++..++|.+.+ |.++++ ++ T Consensus 72 p~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l--y~~~~~---~~ 146 (555) T protein:vir:17 72 VNTSFFKLQINDAEIDNLGMDEQARSEIDLSLSRIERIVTQDIAESSDRVHLEMAMKHLIVTGNALL--YQGKKN---LK 146 (555) T ss_pred CCCcccccccCHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEE--EecCCc---ee Confidence 23333321 2222222 23346889999999999999999875 445553 34 Q ss_pred EEcccceEEEecCCCCCceEEEEEeeeeccce----e-----------------------------EEEEecceEEEEE- Q lcl|Aclame:pro 173 RVPAEQGIPIWTDKEHEELEAFIRMYKLENET----K-----------------------------VEYWDKVTVNYYV- 218 (492) Q Consensus 173 ~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~----~-----------------------------~~~~~~~~~~~~~- 218 (492) +++-.+ |.+-.| ..+.+..++|.++..-.. . .+.+....+..|. T Consensus 147 ~~pl~~-y~v~~d-~~G~vd~v~rk~~~t~~ql~~~fg~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~t~ 224 (555) T protein:vir:17 147 LYPLDR-FVVSRD-GEGNVMEIVTEEQIDRSLLPEEFQKVGGLEGAPDSNAVGEDGPKMGVTAPGGRDKGKSNDALVYTY 224 (555) T ss_pred EEEcCe-EEEeeC-CCcCeeEEEeeeeecHHHHHHHhhhccccchhhhhhhccccchhhhhhhhcccccCCCcceeEeec Confidence 444333 444333 456666666544321000 0 0000011111111 Q ss_pred --EecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 219 --YENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 219 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) ...+....................+|..+|++.+. ++.+|+|-.++..+-+..++.+.-......+....|.+ T Consensus 225 ~~~~~~~~~~~~e~~~~~v~~~l~e~g~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~ 304 (555) T protein:vir:17 225 VCRKDGQVKWHQECDGKVIPGSNSSAPYTHNPWIPLRFNIVDGEAYGRGRVEEFMGDLKSLEALSQAMVEGSAASAKVVF 304 (555) T ss_pred ccccCCeeEEEEecCceeccccccccCcccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCce Confidence 00010110000000000011234566677887653 34689999999999999999998889999999999987 Q ss_pred EEecCCcccchhhHHhhhhccceecCCCCcceeeec--ccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHH Q lcl|Aclame:pro 292 VLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQV--EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALE 369 (492) Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~ 369 (492) .+.-........+... . .+.+..+..++++.+.. ..+.......++.++..|...-..- +. ..+...++..+. T Consensus 305 lv~~~g~~~~~~l~~~-~-~g~v~~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~aFm~~--~~-~d~~r~TAtEV~ 379 (555) T protein:vir:17 305 MVSPSATTKPQNLALA-A-NGAIIQGRPDDVSVVQANKAADFRTVLEMIQKLEQRISDAFLML--QV-RQSERTTATEVQ 379 (555) T ss_pred eeccccccCcceeecC-C-CceeecCCcccceeeeccccchhhHHHHHHHHHHHHHHHHHhhc--CC-CCcccchHHHHH Confidence 7632211111121111 1 12233333445655542 2355666677777776664322211 11 123345666555 Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccC---CcceeeeEEeCCCCCc-CHHHHHHH----HHHHhcc- Q lcl|Aclame:pro 370 FLYTNLNLKADK-----LARKAKVAIQELLWFVFEHFDIK---GEHKDVDISFNYNKVA-NTELQVQT----AQQSMGI- 435 (492) Q Consensus 370 ~~~~~l~~k~~~-----~~~~~~~~l~~~~~li~~~~~~~---~~~~~i~i~f~~~~p~-d~~e~~~~----~~k~~g~- 435 (492) .....+.....- ....+..-+.+++.++.+..-.+ .+. +.+.+.-.+.. ...+.++. +..++++ T Consensus 380 ~r~~E~~~~LGpv~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~~--v~~~i~~~l~~l~r~~~~~~l~~~~~~laq~~ 457 (555) T protein:vir:17 380 ATVQELNEQIGGIYSNLTTELLQPYLARKLHLLQKQRKLPQLPKDL--VQPTVVAGLWGVGRGQDKQQLMEFITTLAQTM 457 (555) T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHhh--hccceeehHHHHHHHHHHHHHHHHHHHHHhhc Confidence 543333333221 12233333444444443322221 122 22222211111 11111111 1112222 Q ss_pred --------CChHHH----HHhCCC----CCCHHHHHHHHHHHHHHHHHhhccccCCC---------------CCCCCcCC Q lcl|Aclame:pro 436 --------VSHETV----LENHPF----VEDLQAELERIEQEQTEYNKQLPNLDDGG---------------ADSAQQQE 484 (492) Q Consensus 436 --------vs~et~----l~~l~~----v~D~~~E~~ri~~E~~~~~~~~~~~~~~~---------------~~~~~~~~ 484 (492) +....+ ...+|. +-..++|+++++++++..+++.......+ .....+.. T Consensus 458 ~~p~~~d~id~d~~~~~~a~~~Gv~p~~ivrs~eev~~~rq~~~~~~~q~~~~~qa~~~~~~~~~~~~~~~~~~~~~~a~ 537 (555) T protein:vir:17 458 GPEIAMKYINPTEFIKRLAAAQGIDTLQLINSPETMKQLGDQQKQDMVQASLINQAGQLAKTPMAEQAMQLIQQQQEGAQ 537 (555) T ss_pred CchhHhhcCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhccccchhhhh Confidence 222222 233332 11235666665544332221111110000 00000001 Q ss_pred CCCCCC-----CC Q lcl|Aclame:pro 485 RSNNKE-----SE 492 (492) Q Consensus 485 ~~~~~~-----~e 492 (492) +.+... +| T Consensus 538 ~~~~a~~~~~~~~ 550 (555) T protein:vir:17 538 DAGAAESETSSAE 550 (555) T ss_pred HHHHHHhhcCCcc Confidence 111111 11 No 150 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=98.23 E-value=2.3e-06 Score=51.49 Aligned_cols=385 Identities=9% Similarity=0.028 Sum_probs=168.4 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCccccccccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISI-GQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLV 107 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 107 (492) |..++.+|.-............. -..+.. ...++.+- . .+. ..... ...-+..+-....| T Consensus 1 MG~f~~lf~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-g--~~~-----~~~v~---~~~al~~~~v~~ci 61 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNYDE--------DIGIDISDSNFWEKF-G--IKL-----NFSVR---GKRALKENTVYVCT 61 (422) T ss_pred CchhhhhhhccCCccchhhhhhh--------ccccccCcchhhhhc-c--ccC-----Ccccc---hhhhhccHHHHHHH Confidence 33333333211111000000000 000000 00111110 0 000 00000 00001223334466 Q ss_pred HHHHHhhhcCCeeecCCchhH--HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccce Q lcl|Aclame:pro 108 DQKVSYIVGKPIAFKHTDDEV--VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQG 179 (492) Q Consensus 108 d~~~~~l~g~~~~~~~~d~~~--~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~ 179 (492) +..++-+.+-|+.+--..+.. ......+.. | ....+...+..+.+.+|.||+.+.++..|++ .+..++|..+ T Consensus 62 ~~ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v 141 (422) T protein:vir:13 62 KIRAESIGKLSLKIYKDKEEYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNV 141 (422) T ss_pred HHHHHhhhhCceEEEecCcccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcce Confidence 777777767777662221111 112222221 3 2346777788899999999999999988876 5788899999 Q ss_pred EEEecCCCCCceEEEEEee-eeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----- Q lcl|Aclame:pro 180 IPIWTDKEHEELEAFIRMY-KLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----- 253 (492) Q Consensus 180 ~~i~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----- 253 (492) .+++++........-++|. ....+... .+.+. -|+++. T Consensus 142 ~~~~~~~~~~~~~~~~~y~~~~~~g~~~-~~~~~-----------------------------------eiih~~~~~~~ 185 (422) T protein:vir:13 142 TKIIDDDNFLSSLSKVWYVVTDKNGKEH-KLLPD-----------------------------------EMLHFIGDITL 185 (422) T ss_pred EEEEcCCcceeccceEEEEEEeCCCeEE-EEccc-----------------------------------ceEEEcCCCCC Confidence 8887753211100001110 00111000 00000 122222 Q ss_pred CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecCCCCcc Q lcl|Aclame:pro 254 NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVSDNGGV 322 (492) Q Consensus 254 nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~d~ 322 (492) +...|.|.++.....++....+..-..+.+...+.|-.++.-. +.+..+.++..+. .++++.++++.++ T Consensus 186 ~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~ 265 (422) T protein:vir:13 186 DGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDLDEKAKKIFKKEFESMSNGLENAHSISLLPFGYQF 265 (422) T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCcee Confidence 1235778888777777766666555556666666666665432 2222233332221 2345556666565 Q ss_pred eeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 323 DTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD 402 (492) Q Consensus 323 ~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 402 (492) +.++.......+.+..+..+..|+..-++|..-.+...+ .+...++.... ..+..+|.-.++.+...++ T Consensus 266 ~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~-~~~sn~e~~~~----------~f~~~~l~P~~~~ie~~l~ 334 (422) T protein:vir:13 266 QPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLER-ATFNNLTEQQK----------DFYVTTLQSSLTVYEQEIQ 334 (422) T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC-CCcccHHHHHH----------HHHHHHHHHHHHHHHHHHH Confidence 555544444555666677778888888888654432211 11111111111 1112222222222221111 Q ss_pred -----cCC--cceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 403 -----IKG--EHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPN 471 (492) Q Consensus 403 -----~~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~ 471 (492) ... ....+++.+..-+..|..+.++++.++. |+++.-.+.++++.- ++-+.-+.. ....+ T Consensus 335 ~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~---------~n~~~ 405 (422) T protein:vir:13 335 DKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRENLPPVEGGDRLLVN---------GNMIP 405 (422) T ss_pred HhhCChhhhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeec---------cCccc Confidence 111 1123444445666678999999988874 789998888877542 211110000 00000 Q ss_pred ccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 472 LDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~e 492 (492) . ...++++.+.++++.+ T Consensus 406 l----~~~~~~~~~~g~~~g~ 422 (422) T protein:vir:13 406 I----EMAGEQYKKGGEKGGK 422 (422) T ss_pred h----hhcccccccCCCcCCC Confidence 0 0111112222223333 No 151 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=98.19 E-value=2.8e-06 Score=51.02 Aligned_cols=428 Identities=10% Similarity=0.075 Sum_probs=154.9 Q ss_pred HHHHHHH-HhhcCCChhhHHHHHHHHH-HHH-HHH-----HHHHHHHHHHhcCCCccccccc----------cccccccc Q lcl|Aclame:pro 28 QTEIFDA-IVRTNNKPETLEEMIVRYI-KQH-LEK-----LPEISIGQEYYEQRPDIVKEPK----------PVDATGAV 89 (492) Q Consensus 28 ~~~~~~~-~~~~~~~~~~~~~~l~~~i-~~~-~~~-----~~~~~~~~~YY~G~~~i~~~~~----------~~~~~~~~ 89 (492) +..-++. +-+..+..+.+.+.....+ .++ .++ ....+.+.+.-+++......+. +....... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (574) T protein:vir:80 1 MPKWLDKALGIEKSSIEETRNMENYKMHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRN 80 (574) T ss_pred CcchhhhhhccchhhHHHHHhhhhhccccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCC Confidence 1111221 1122222222222111100 000 000 0111112222233221111100 00000000 Q ss_pred c-ccccccc-c-ccchHHHHHHHHHHhhh-----------cCCeeecCCc---------hhHHHHHHHHHhc-------- Q lcl|Aclame:pro 90 D-PLKPDDR-M-ITNFHANLVDQKVSYIV-----------GKPIAFKHTD---------DEVVKRIDEVLGN-------- 138 (492) Q Consensus 90 ~-~~~~~~r-i-~~n~~~~ivd~~~~~l~-----------g~~~~~~~~d---------~~~~~~l~~~~~n-------- 138 (492) . ......+ . .......+++..+..+. +-|+.+...+ ......+..++.+ T Consensus 81 ~~~~~~~l~~~~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~ 160 (574) T protein:vir:80 81 SQDLHKTLKKFGNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPN 160 (574) T ss_pred cccHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCc Confidence 0 0000000 0 11223344444433221 2344332110 1111122223221 Q ss_pred --cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEE Q lcl|Aclame:pro 139 --RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVN 215 (492) Q Consensus 139 --~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 215 (492) .+..+...+..+.+.+|.+|+.+-++.+|++ .+..++|..+.+..+.... ......+||....+.....+....+. T Consensus 161 ~~s~~ef~~~lv~~lll~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~-~~~~~~~y~~~~~g~~~~~~~~~eii 239 (574) T protein:vir:80 161 RDNFTTFCKKLVRATYMYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGK-LIKNGERFVQVIDNRIVAKFNERELA 239 (574) T ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccc-cccCceEEEEEeCCceEEEEccccEE Confidence 2335667778889999999999988888886 4778899988887653211 00011122221111111111111111 Q ss_pred EEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE-- Q lcl|Aclame:pro 216 YYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL-- 293 (492) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~-- 293 (492) ++.. + |.-.......|.|.++.....++....+..-..+.+...+.|-.++ T Consensus 240 h~~~----------------------~-----~~~~~~~~~~G~spi~~a~~~i~~~~~a~~~~~~~f~ng~~p~gil~~ 292 (574) T protein:vir:80 240 FAVR----------------------N-----PRADIEVGQYGYPELEIALKQFIAHENTEVFNDRFFSHGGTTRGILHV 292 (574) T ss_pred EEec----------------------c-----CCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEe Confidence 1100 0 0000001124778887777777666665555555566656666444 Q ss_pred ecC---CcccchhhHHhhh--------hccc-eecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc- Q lcl|Aclame:pro 294 KNY---DDQELPEFKRLLR--------YYGA-IKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG- 360 (492) Q Consensus 294 ~g~---~~~~~~~~~~~~~--------~~~~-~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~- 360 (492) .+. +.+....++..+. .+++ +.++++.++.-++.......+....+..+..|+..=++|.+-.+-.. T Consensus 293 ~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~ 372 (574) T protein:vir:80 293 KTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDPAEINFPNN 372 (574) T ss_pred CCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccc Confidence 342 2222233332221 1222 22344444444443344445566677777788887788765432111 Q ss_pred ----cc----hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 361 ----SA----PSGVALEFLYTNLNL-KADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQ 431 (492) Q Consensus 361 ----~~----~Sg~Al~~~~~~l~~-k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k 431 (492) +. .+...++........ .+.=....+...|.+. ++. .....+.+.|.+.-..+..+...++.. T Consensus 373 ~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~---Ll~-----~~~~~~~~~f~~~d~~~~~~~~~~~~~ 444 (574) T protein:vir:80 373 GGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTY---IVA-----EFGEKYQFQFRGGDLSAQLDKLKIIEQ 444 (574) T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhh-----hcCCceEEEecccchhhHHHHHHHHHH Confidence 00 000011111111111 1111111122222111 111 111235677876655566655544332 Q ss_pred -HhccCChHHHHHhCCC--CCCHHH--------HHHH------HHHHHHHHHHhhccccCCCCCCC-CcCCCCCCCCCC Q lcl|Aclame:pro 432 -SMGIVSHETVLENHPF--VEDLQA--------ELER------IEQEQTEYNKQLPNLDDGGADSA-QQQERSNNKESE 492 (492) Q Consensus 432 -~~g~vs~et~l~~l~~--v~D~~~--------E~~r------i~~E~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e 492 (492) ..|+++.-.+.++++. +++-+. .+.. ...+.+.. .........+++++ .+.+...+.+++ T Consensus 445 ~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~d 522 (574) T protein:vir:80 445 EGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQD-RLNRLLELSGGDVEQPEPEEPKDSQND 522 (574) T ss_pred HhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhc-cccccccccCCCCCCCCCCCCCCcccc Confidence 2589998888877642 221000 0000 00001100 00011111111111 111111111111 No 152 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=98.17 E-value=3.2e-06 Score=50.71 Aligned_cols=379 Identities=9% Similarity=-0.015 Sum_probs=179.3 Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc----ccccccccccccccccchHHHHHHHHHHhhh Q lcl|Aclame:pro 40 NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVD----ATGAVDPLKPDDRMITNFHANLVDQKVSYIV 115 (492) Q Consensus 40 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~----~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~ 115 (492) .+. ..+.+.+. ....-.+....|..|-. .++... ..+....... . .......-++.+....+. T Consensus 1 v~~----~~l~~e~a---t~~~~~d~~~~~~~~l~----~~~~~il~~a~~g~~~~y~~-l-~~D~~i~s~l~~rk~av~ 67 (488) T protein:vir:99 1 MEK----PALGREIA---TSGDGRDITRPFISGLQ----VPNDSILQRRGGNDLRVYEE-I-LSDAQVKTVWGQRQLAVV 67 (488) T ss_pred CCc----cchhHHHH---HHHhhhhhhccccCCCC----CCChHHHHhhccCCHHHHHH-H-hhChHHHHHHHHHHHHHh Confidence 000 00111110 11111111122222211 111000 0000000000 0 013455667777788888 Q ss_pred cCCeeecCCch-----hHHHHHHHHHhc-cHHHHHHHHHHHHHhcCeE-EEEEEeCCCCceE---EEEEcccceEEEecC Q lcl|Aclame:pro 116 GKPIAFKHTDD-----EVVKRIDEVLGN-RFDDKLHSVLTGASNKGIE-WLHPYLDEEGEFK---LFRVPAEQGIPIWTD 185 (492) Q Consensus 116 g~~~~~~~~d~-----~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~-~~~v~~d~~g~~~---i~~~~p~~~~~i~d~ 185 (492) +.+..+.+.++ ...+.+..++++ +|...+.++. ++.-||.+ ++++|.-.+|... +...+|+.+ .|+. T Consensus 68 ~~~w~i~p~~~~~~~~~~ae~v~~~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f--~~d~ 144 (488) T protein:vir:99 68 SREWKVEAGGDRPIDQAAAEHLEQQLQRVGWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRF--RYDQ 144 (488) T ss_pred cCCceEEcCCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeeecccce--eecC Confidence 88988875432 233556666654 6777666665 67889986 4566765556544 333444322 1332 Q ss_pred CCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEee--cCccCCCCcHH Q lcl|Aclame:pro 186 KEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPF--KNNDLEISDIF 263 (492) Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~--~nn~~~~s~~~ 263 (492) .. .+. +...... ......+.+++.+-.++. ..++.|.|.+. T Consensus 145 ~~--~l~----~~~~~~~-------------------------------~~g~~lp~~~~~i~~~~~~~~g~p~g~gLl~ 187 (488) T protein:vir:99 145 DG--GLR----LLTPNNM-------------------------------FEGEPCPAPYFWHFSTGADNDDEPYGLGLAH 187 (488) T ss_pred CC--ceE----EeccCCC-------------------------------CCccccccCceEEEEeecCCCCCcccchHHH Confidence 11 111 0000000 000001111222211111 23567888888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC----cccchhhH---HhhhhccceecCCCCcceeeecc-cCHHHHH Q lcl|Aclame:pro 264 MYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD----DQELPEFK---RLLRYYGAIKVSDNGGVDTIQVE-VPVENSK 335 (492) Q Consensus 264 ~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~----~~~~~~~~---~~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~ 335 (492) .+...---=+..+.+++.-++.|..|+++.+-.. .++..... .++....+..++.+.++++++.. .+...++ T Consensus 188 ~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a~~~ek~~l~~av~~~~~~~~~viP~~~~ie~~ea~~~~~~~~~ 267 (488) T protein:vir:99 188 WLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTATPEDKAKLLAALHAIQTDSAIIMPAGMQAELLEAGRSGTADYK 267 (488) T ss_pred HHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCCCHHHHHHHHHHHHHHhcCcEEEecCCceeEEeecCCCChHHHH Confidence 7665544445556788888999999999887422 12212212 23445566677889999999854 4455688 Q ss_pred HHHHHHHHHHHHHh--CCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCcceeeeE Q lcl|Aclame:pro 336 KYLDELYQKIMLFG--QAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQ-ELLWFVFEHFDIKGEHKDVDI 412 (492) Q Consensus 336 ~~i~~l~~~i~~~a--~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~i~i 412 (492) .+++...+.|...- ++- .+..+.|+...|..=. .-....+..-.+.+...+. ++++.++.+- ... ..-..+ T Consensus 268 ~li~~~d~~Isk~iLGqtl-ts~~~~Gs~a~~~vh~---~v~~d~~~aDa~~i~~tln~~li~~l~~~N-~~~-~~~p~~ 341 (488) T protein:vir:99 268 TLHDTMDATIAKVGLGQVA-STQGTPGRLGNDDLQA---DVRLDLVKADADLICESFNLGPARWLTEWN-FPG-AQPPRV 341 (488) T ss_pred HHHHHHHHHHHHHHhhhhh-cccccccchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCC-cCCcee Confidence 89999888886543 222 2222222222332211 2233344455566666664 4666665553 222 222457 Q ss_pred EeCCCCCcCHHHHHHHHHHHh---cc-CChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC Q lcl|Aclame:pro 413 SFNYNKVANTELQVQTAQQSM---GI-VSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN 488 (492) Q Consensus 413 ~f~~~~p~d~~e~~~~~~k~~---g~-vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (492) .|....+.|..+.++.+.+++ |+ ++.+.+.+.++.- .++.+ + +.. . ........+.. +..+ T Consensus 342 ~~~~~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~Gip-~~~~~------~--~~~---~--~~~~~~~~~~~-~~~~ 406 (488) T protein:vir:99 342 YRVIEEPEDITAKAERDEKVFRMSGFRPTRGYVQETYGVE-VESTQ------A--EAT---A--PTPSTEFAEGD-QPSD 406 (488) T ss_pred EecCCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHcCCC-Ccccc------c--ccc---c--CCCcccCCCCC-CCCC Confidence 788888899999999988874 65 8888888887642 11100 0 000 0 00000000000 0000 Q ss_pred CCCC Q lcl|Aclame:pro 489 KESE 492 (492) Q Consensus 489 ~~~e 492 (492) .... T Consensus 407 ~~~~ 410 (488) T protein:vir:99 407 PAAA 410 (488) T ss_pred chHH Confidence 0000 No 153 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=98.13 E-value=4e-06 Score=50.15 Aligned_cols=406 Identities=11% Similarity=0.029 Sum_probs=182.7 Q ss_pred hhhHHHHHHHHHhcCCceeccCCCcHHHH---HH---HHh----hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 3 FIQLISQVAQALIKGGNILYPSQPTQTEI---FD---AIV----RTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQ 72 (492) Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~----~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G 72 (492) .-+++.+..+ +.+.++...+. +. ..+ ..+.+|..+...++.... -...++..+.+...- T Consensus 1 ~~~~~d~~g~--------p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~---gd~~~~~~L~~~m~e 69 (528) T protein:vir:10 1 MAAIVDIYGN--------PLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQ---GHLQAQAELFMDMEE 69 (528) T ss_pred CCeeECCCCC--------ccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhC---CCHHHHHHHHHHHHh Confidence 0111111000 11111111110 00 000 011222222233322211 122222222221110 Q ss_pred CCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCC------chhHHHHHHHHHhc--cHHHHH Q lcl|Aclame:pro 73 RPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT------DDEVVKRIDEVLGN--RFDDKL 144 (492) Q Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~------d~~~~~~l~~~~~n--~~~~~~ 144 (492) ......-.+.+...-+.+.+.++... +....+.++.++.+ +|.... T Consensus 70 --------------------------~D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i 123 (528) T protein:vir:10 70 --------------------------RDAHLFAEMSKRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLM 123 (528) T ss_pred --------------------------hChHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHH Confidence 01223445666666677778777542 12334455566543 455544 Q ss_pred HHHHHHHHhcCeE-EEEEEeCCCCceE---EEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEe Q lcl|Aclame:pro 145 HSVLTGASNKGIE-WLHPYLDEEGEFK---LFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYE 220 (492) Q Consensus 145 ~~~~~~~~~~G~~-~~~v~~d~~g~~~---i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (492) .. ..++.-||.+ ++++|.-.+|... +.+++|+.+ - |++.. .+.. +. .......+.+ T Consensus 124 ~~-~lda~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~~f-~-~~~~~--~~~l--~~-~~~~~~g~~l------------ 183 (528) T protein:vir:10 124 LD-CMDGVGHGYSAIELDWSLQGREWLPQAFDHRPQSWF-Q-LNPDD--QDEL--RL-RDNSIAGEVL------------ 183 (528) T ss_pred HH-HHhhhhhcceeEEEEEeecCCceeEEEeeeecccce-e-eccCC--CcEE--ec-cCCCCCceee------------ Confidence 44 4457778886 4566765555543 333333322 1 22111 1110 00 0000001111 Q ss_pred cceeeeccccccccccccceeccCCccceEee--cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe---c Q lcl|Aclame:pro 221 NGSLIPDYSNNLENSKTHFSTGSWGKIPFIPF--KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK---N 295 (492) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~--~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~---g 295 (492) .+++.+=.++- ..++.|.|.+..+....--=+..+.+++.-++.|..|+++.+ | T Consensus 184 ---------------------~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~ 242 (528) T protein:vir:10 184 ---------------------QPFGWIMHKPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPIRLGKYPPG 242 (528) T ss_pred ---------------------cCCCeEEEeecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCC Confidence 11221111111 235568888877665555556667888888999999999987 3 Q ss_pred CCcccchhhHH---hhhhccceecCCCCcceeeecc-cCHHHHHHHHHHHHHHHHHHhCCCCCCcc----ccccchhHHH Q lcl|Aclame:pro 296 YDDQELPEFKR---LLRYYGAIKVSDNGGVDTIQVE-VPVENSKKYLDELYQKIMLFGQAVDFSSD----KFGSAPSGVA 367 (492) Q Consensus 296 ~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~i~~l~~~i~~~a~~p~~~~~----~~~~~~Sg~A 367 (492) .+.++...... .+....+..++.+.++++++.. .+...++.+++...+.|...--.-.++.+ ..|+..-|. T Consensus 243 a~~~ek~~L~~al~~i~~~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~Alg~- 321 (528) T protein:vir:10 243 TPDEEKVTLLRAVTGLGHAAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAILGGTLTSQTSESGGGAYALGQ- 321 (528) T ss_pred CCHHHHHHHHHHHHHHhhCcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhhHH- Confidence 33333333332 2344556678889999999854 45567888999888888765422222211 112221121 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccC--CcceeeeEEeCCCCCcCHHHHHHHHHHHh--cc-CChHHH Q lcl|Aclame:pro 368 LEFLYTNLNLKADKLARKAKVAIQ-ELLWFVFEHFDIK--GEHKDVDISFNYNKVANTELQVQTAQQSM--GI-VSHETV 441 (492) Q Consensus 368 l~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~--~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~-vs~et~ 441 (492) ....-....+..-.+.+...+. ++++-++.+-... ....-..+.|....+.|..+.++.+.+++ |+ +|.+.+ T Consensus 322 --vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i 399 (528) T protein:vir:10 322 --VHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKDRADLAAMATSLPPLVKLGVQVPVNWV 399 (528) T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCcccHHHHHHHHHHHHhCCCCCCHHHH Confidence 1112233344455556666664 4666666553222 12234578899999999999999998885 66 899999 Q ss_pred HHhCCCCCCHH--HHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 442 LENHPFVEDLQ--AELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 442 l~~l~~v~D~~--~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .+.++. ..++ +++.. .+....................+.......+++ T Consensus 400 ~e~~gi-p~p~~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (528) T protein:vir:10 400 QEQLGI-PLPANGEAVLG--DQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQE 449 (528) T ss_pred HHHhCC-CCCCCCccccc--CCCcccccccCcccccccccccccccccccccc Confidence 998874 2111 11110 000000000000000111011111111111111 No 154 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=98.12 E-value=4.1e-06 Score=50.11 Aligned_cols=377 Identities=11% Similarity=0.014 Sum_probs=163.8 Q ss_pred HHHhcCCCccccccccccc--------------ccc-----cc-----------------ccccccccccchHHHHHHHH Q lcl|Aclame:pro 67 QEYYEQRPDIVKEPKPVDA--------------TGA-----VD-----------------PLKPDDRMITNFHANLVDQK 110 (492) Q Consensus 67 ~~YY~G~~~i~~~~~~~~~--------------~~~-----~~-----------------~~~~~~ri~~n~~~~ivd~~ 110 (492) .+||+-+.-.++-+.+... +.. .. ...+..-+.+.=.-..|+.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~I 80 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMI 80 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccccccCCCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHH Confidence 3344332211110000000 000 00 00000000001111245555 Q ss_pred HHhhhcCCeeecCCchh--HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEE Q lcl|Aclame:pro 111 VSYIVGKPIAFKHTDDE--VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPI 182 (492) Q Consensus 111 ~~~l~g~~~~~~~~d~~--~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i 182 (492) ++-+..-|+.+.-+... .......+.. | ....+...+..+++.+|.||+.+.++.+|++ .+..++|..+.+. T Consensus 81 a~~iA~lpl~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~ 160 (441) T protein:vir:98 81 ASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELK 160 (441) T ss_pred HHhhccCceEEecCCcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEE Confidence 55555566665432111 1112222322 3 2335667778889999999999999988886 4788999999887 Q ss_pred ecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC----ccCC Q lcl|Aclame:pro 183 WTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----NDLE 258 (492) Q Consensus 183 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n~~~ 258 (492) .++ .+.+.+...............+.... |++++. ...| T Consensus 161 ~~~--~g~~~~~~~~~~~~~~~~~~~~~~~d-----------------------------------viHir~~~~dg~~G 203 (441) T protein:vir:98 161 LDA--RGRLYYFHQRIDSNGNNIERNVKFED-----------------------------------MLDIKFYSLDGING 203 (441) T ss_pred ECC--CCcEEEEEEEeccCcceeeEEEcccc-----------------------------------EEEeccCCCCCccc Confidence 764 23333222111111011001111111 122221 2246 Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe--cCC-ccc-chhhHHhhh--------hccceecCCCCcceeee Q lcl|Aclame:pro 259 ISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK--NYD-DQE-LPEFKRLLR--------YYGAIKVSDNGGVDTIQ 326 (492) Q Consensus 259 ~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~--g~~-~~~-~~~~~~~~~--------~~~~~~~~~~~d~~~l~ 326 (492) .|.+......++....+..-..+.+...+.|-.++. +.. .+. .+..+.... .++++.++++.+.+.++ T Consensus 204 ~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~ 283 (441) T protein:vir:98 204 LSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLE 283 (441) T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEcc Confidence 777777666666555554445555565566655544 432 111 122222221 13456666666666555 Q ss_pred cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc Q lcl|Aclame:pro 327 VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGE 406 (492) Q Consensus 327 ~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~ 406 (492) .......+....+..+..|+..=++|..-.+...++.|.+.....+. ..+.- +-..+++.+... +..... T Consensus 284 ~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~y~---~tl~P----~~~~ie~~ln~~---L~~~~~ 353 (441) T protein:vir:98 284 VDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDYL---STLKP----YITCVCAELNFK---FNDEYV 353 (441) T ss_pred CChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHHHH---HHHHH----HHHHHHHHHHhh---cccccc Confidence 44444455566666677788777887655432222222111111110 11111 111111111111 111111 Q ss_pred ceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 407 HKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 407 ~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) ...+++....-+-.|..+.++++.++ .|+++...+.++++. +++.+..+-.+..-- ...+....... +...+.+ T Consensus 354 ~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd~~~~~~~~n~-~~~~~~~~~q~-~~~~~~~ 431 (441) T protein:vir:98 354 NREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNH-VNIELVDEYQM-NKSRATD 431 (441) T ss_pred CceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccc-ccccccccccc-ccccccc Confidence 22344444555677899999988877 478999888887643 222221111100000 00000000111 1111122 Q ss_pred CCCCCCCCCC Q lcl|Aclame:pro 483 QERSNNKESE 492 (492) Q Consensus 483 ~~~~~~~~~e 492 (492) ....+++++| T Consensus 432 ~~~kgGe~ne 441 (441) T protein:vir:98 432 KKLKGGEENE 441 (441) T ss_pred cccCCCCCCC Confidence 3345555566 No 155 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=98.06 E-value=5.7e-06 Score=49.33 Aligned_cols=431 Identities=14% Similarity=0.133 Sum_probs=151.1 Q ss_pred ChhhhHHHH-------HHHHHhcCCceeccCCCcHHHHHHHHh--hcC---CC-hhhHHH---------HHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQ-------VAQALIKGGNILYPSQPTQTEIFDAIV--RTN---NK-PETLEE---------MIVRYIKQHLE 58 (492) Q Consensus 1 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~---------~l~~~i~~~~~ 58 (492) --+|+-|.+ +.|. .++..-.|. +| ....++... +.. .. +..+.. ++..+|+-... T Consensus 30 ~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~ 106 (563) T protein:vir:99 30 QANIKKIEQDNKEYQDLTKS-LYGQQQAYA-EP-FIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSN 106 (563) T ss_pred hhhHhhhhccchhHHHHHhh-hccCCCcch-hh-hHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHH Confidence 122222221 2221 122222221 11 111111000 000 00 111122 23333333333 Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhc Q lcl|Aclame:pro 59 KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGN 138 (492) Q Consensus 59 ~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n 138 (492) ....+.-...+.+.--.+.-+........ .+. ...-..-...+|.--.+.. ++ +.. T Consensus 107 ~vA~~~~~~~~~~~~~~~~i~l~~~~~~~----~~~--------~~~~~~~l~~~l~~~~~~~---~p---------~~~ 162 (563) T protein:vir:99 107 QVAMYCQPARYSEKGLGFEVRLRDLDAEP----GRK--------EKEEMKRIEDFIVNTGKDK---DV---------DRD 162 (563) T ss_pred HHHHHhhhhhhhcccccceeEEeecCCCc----chh--------hhhhhHHHHHHhhhcCCCC---CC---------Ccc Confidence 33333222222111100000000000000 000 0000011111111000000 00 001 Q ss_pred cHHHHHHHHHHHHHhcCeEEEEEE--eCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEE Q lcl|Aclame:pro 139 RFDDKLHSVLTGASNKGIEWLHPY--LDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVN 215 (492) Q Consensus 139 ~~~~~~~~~~~~~~~~G~~~~~v~--~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 215 (492) .+..+...+..+.+.+|.||+.+. ++..|++ .+..++|..+.+..++.. .......+++....+.....+....+. T Consensus 163 t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g-~~~~~~~~y~~~~~g~~~~~~~~~evI 241 (563) T protein:vir:99 163 SFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKG-KIIKGGKRFVQVVDKRVVASFTSRELA 241 (563) T ss_pred hHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCC-ceeccceeEEEEeCCceeEEecCcceE Confidence 344566778889999999988765 4555665 578889999888766432 111111122111111111111111110 Q ss_pred EEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE-- Q lcl|Aclame:pro 216 YYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL-- 293 (492) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~-- 293 (492) +.+ .. |-........|.|.++.....+.....+..-..+.+...+.|-.++ T Consensus 242 ~~~-------------------------~~--~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~ 294 (563) T protein:vir:99 242 MGI-------------------------RN--PRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQI 294 (563) T ss_pred EEe-------------------------cc--CCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEe Confidence 000 00 0000001234777777666666655555555555566666666444 Q ss_pred ecC---CcccchhhHHhhhh--------ccc-eecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccc-- Q lcl|Aclame:pro 294 KNY---DDQELPEFKRLLRY--------YGA-IKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKF-- 359 (492) Q Consensus 294 ~g~---~~~~~~~~~~~~~~--------~~~-~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~-- 359 (492) .|. +.+....++..+.. +++ +.++++.+.+-++.......+....+..+..|+..=++|..-.+-. T Consensus 295 ~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~ 374 (563) T protein:vir:99 295 RSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNR 374 (563) T ss_pred CCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccccc Confidence 343 22222233332211 222 3445554555554444455566777778888888888886543211 Q ss_pred ---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcceeeeEEeCCCCCcCHHHHHHHHHHH- Q lcl|Aclame:pro 360 ---GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---KGEHKDVDISFNYNKVANTELQVQTAQQS- 432 (492) Q Consensus 360 ---~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~i~f~~~~p~d~~e~~~~~~k~- 432 (492) ++...|..+... .+. ......+..+|.-+++.+...++. ......+.+.|.+.-+.+..+..+. .++ T Consensus 375 ~~~~~~~~~ss~~~s--n~e---~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~f~r~D~~~~~e~~~~-~~~~ 448 (563) T protein:vir:99 375 GGATGSKGGSTLNEA--DPG---KKQQQSQNKGLQPLLRFIEDLVNRHIISEYGDKYTFQFVGGDTKSATDKLNI-LKLE 448 (563) T ss_pred ccccccccccchhhc--cHH---HHHHHHHHHHHHHHHHHHHHHHHhhhchhcccccEEEeccCCHHHHHHHHHH-HHHh Confidence 111111111110 000 011111222222222222211110 1112345667776655555554433 233 Q ss_pred -hccCChHHHHHhCCC--CCCHHH-----------HHH-HHHHH--H-HHHHHhhccccCCCCCCCC--cCCCCCCCCCC Q lcl|Aclame:pro 433 -MGIVSHETVLENHPF--VEDLQA-----------ELE-RIEQE--Q-TEYNKQLPNLDDGGADSAQ--QQERSNNKESE 492 (492) Q Consensus 433 -~g~vs~et~l~~l~~--v~D~~~-----------E~~-ri~~E--~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e 492 (492) .|+++.-.++++++. +++-+. ... ....+ . +..............+..+ ++..+.+++.+ T Consensus 449 ~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (563) T protein:vir:99 449 TQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKE 528 (563) T ss_pred cCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCccc Confidence 488998887776643 221110 000 00000 0 0111111111111111101 11111111111 No 156 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=98.06 E-value=5.7e-06 Score=49.33 Aligned_cols=431 Identities=14% Similarity=0.133 Sum_probs=151.1 Q ss_pred ChhhhHHHH-------HHHHHhcCCceeccCCCcHHHHHHHHh--hcC---CC-hhhHHH---------HHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQ-------VAQALIKGGNILYPSQPTQTEIFDAIV--RTN---NK-PETLEE---------MIVRYIKQHLE 58 (492) Q Consensus 1 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~~---------~l~~~i~~~~~ 58 (492) --+|+-|.+ +.|. .++..-.|. +| ....++... +.. .. +..+.. ++..+|+-... T Consensus 30 ~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~ 106 (563) T protein:vir:95 30 QANIKKIEQDNKEYQDLTKS-LYGQQQAYA-EP-FIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSN 106 (563) T ss_pred hhhHhhhhccchhHHHHHhh-hccCCCcch-hh-hHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHH Confidence 122222221 2221 122222221 11 111111000 000 00 111122 23333333333 Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhc Q lcl|Aclame:pro 59 KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGN 138 (492) Q Consensus 59 ~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n 138 (492) ....+.-...+.+.--.+.-+........ .+. ...-..-...+|.--.+.. ++ +.. T Consensus 107 ~vA~~~~~~~~~~~~~~~~i~l~~~~~~~----~~~--------~~~~~~~l~~~l~~~~~~~---~p---------~~~ 162 (563) T protein:vir:95 107 QVAMYCQPARYSEKGLGFEVRLRDLDAEP----GRK--------EKEEMKRIEDFIVNTGKDK---DV---------DRD 162 (563) T ss_pred HHHHHhhhhhhhcccccceeEEeecCCCc----chh--------hhhhhHHHHHHhhhcCCCC---CC---------Ccc Confidence 33333222222111100000000000000 000 0000011111111000000 00 001 Q ss_pred cHHHHHHHHHHHHHhcCeEEEEEE--eCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEE Q lcl|Aclame:pro 139 RFDDKLHSVLTGASNKGIEWLHPY--LDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVN 215 (492) Q Consensus 139 ~~~~~~~~~~~~~~~~G~~~~~v~--~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 215 (492) .+..+...+..+.+.+|.||+.+. ++..|++ .+..++|..+.+..++.. .......+++....+.....+....+. T Consensus 163 t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~pl~p~~V~v~~~~~g-~~~~~~~~y~~~~~g~~~~~~~~~evI 241 (563) T protein:vir:95 163 SFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFIAVDPSTIFYATDKKG-KIIKGGKRFVQVVDKRVVASFTSRELA 241 (563) T ss_pred hHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEEEeCCceeEEEECCCC-ceeccceeEEEEeCCceeEEecCcceE Confidence 344566778889999999988765 4555665 578889999888766432 111111122111111111111111110 Q ss_pred EEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE-- Q lcl|Aclame:pro 216 YYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL-- 293 (492) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~-- 293 (492) +.+ .. |-........|.|.++.....+.....+..-..+.+...+.|-.++ T Consensus 242 ~~~-------------------------~~--~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~ 294 (563) T protein:vir:95 242 MGI-------------------------RN--PRTELSSSGYGLSEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQI 294 (563) T ss_pred EEe-------------------------cc--CCCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEe Confidence 000 00 0000001234777777666666655555555555566666666444 Q ss_pred ecC---CcccchhhHHhhhh--------ccc-eecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccc-- Q lcl|Aclame:pro 294 KNY---DDQELPEFKRLLRY--------YGA-IKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKF-- 359 (492) Q Consensus 294 ~g~---~~~~~~~~~~~~~~--------~~~-~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~-- 359 (492) .|. +.+....++..+.. +++ +.++++.+.+-++.......+....+..+..|+..=++|..-.+-. T Consensus 295 ~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~ 374 (563) T protein:vir:95 295 RSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNR 374 (563) T ss_pred CCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccccc Confidence 343 22222233332211 222 3445554555554444455566777778888888888886543211 Q ss_pred ---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcceeeeEEeCCCCCcCHHHHHHHHHHH- Q lcl|Aclame:pro 360 ---GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---KGEHKDVDISFNYNKVANTELQVQTAQQS- 432 (492) Q Consensus 360 ---~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~i~f~~~~p~d~~e~~~~~~k~- 432 (492) ++...|..+... .+. ......+..+|.-+++.+...++. ......+.+.|.+.-+.+..+..+. .++ T Consensus 375 ~~~~~~~~~ss~~~s--n~e---~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~f~r~D~~~~~e~~~~-~~~~ 448 (563) T protein:vir:95 375 GGATGSKGGSTLNEA--DPG---KKQQQSQNKGLQPLLRFIEDLVNRHIISEYGDKYTFQFVGGDTKSATDKLNI-LKLE 448 (563) T ss_pred ccccccccccchhhc--cHH---HHHHHHHHHHHHHHHHHHHHHHHhhhchhcccccEEEeccCCHHHHHHHHHH-HHHh Confidence 111111111110 000 011111222222222222211110 1112345667776655555554433 233 Q ss_pred -hccCChHHHHHhCCC--CCCHHH-----------HHH-HHHHH--H-HHHHHhhccccCCCCCCCC--cCCCCCCCCCC Q lcl|Aclame:pro 433 -MGIVSHETVLENHPF--VEDLQA-----------ELE-RIEQE--Q-TEYNKQLPNLDDGGADSAQ--QQERSNNKESE 492 (492) Q Consensus 433 -~g~vs~et~l~~l~~--v~D~~~-----------E~~-ri~~E--~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e 492 (492) .|+++.-.++++++. +++-+. ... ....+ . +..............+..+ ++..+.+++.+ T Consensus 449 ~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (563) T protein:vir:95 449 TQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKE 528 (563) T ss_pred cCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCccc Confidence 488998887776643 221110 000 00000 0 0111111111111111101 11111111111 No 157 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=98.04 E-value=6.1e-06 Score=49.17 Aligned_cols=427 Identities=9% Similarity=0.036 Sum_probs=180.7 Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcC--C Q lcl|Aclame:pro 45 LEEMIVRYIKQHLE----KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGK--P 118 (492) Q Consensus 45 ~~~~l~~~i~~~~~----~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~--~ 118 (492) .++..++.++.... -..+.+.+.+|..- ++-... +. .......|+..+-+...++.+++.|++- | T Consensus 1 mk~~a~~r~~~l~~~R~~~e~~w~e~~~y~lP-----~~~~~~-~~---~~~~~~~~~~dstg~~a~~~Laa~l~~~ltp 71 (542) T protein:vir:78 1 MKGLAQARYSAMRADREDFLDMARRCAALTLP-----YLLTED-GH---ASGGRLQQPYQSLGSKGVNALSSKLMLSLFP 71 (542) T ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----ccCCCC-CC---cccccccccccchHHHHHHHHHHHHHHhhcC Confidence 23333333333333 23344445555422 111000 00 0111223566677788888888877642 2 Q ss_pred -----eeecCCc----------h----hHHHHH--------HHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEE Q lcl|Aclame:pro 119 -----IAFKHTD----------D----EVVKRI--------DEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKL 171 (492) Q Consensus 119 -----~~~~~~d----------~----~~~~~l--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i 171 (492) +++...+ + ++...+ ..+..++|.....++.++..++|.|.+++ ++++ + T Consensus 72 p~~~WF~l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~--~~~~---~ 146 (542) T protein:vir:78 72 IQTSFFKLQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAESSDRVQLTAAMKHLIVTGNVLVFA--GKKT---L 146 (542) T ss_pred CCCccccccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEe--cCCC---c Confidence 2233222 1 122222 23445789999999999999999996554 5542 4 Q ss_pred EEEcccceEEEecCCCCCceEEEEEeeeeccc------------------------eeEEE----EecceEEEEEE---e Q lcl|Aclame:pro 172 FRVPAEQGIPIWTDKEHEELEAFIRMYKLENE------------------------TKVEY----WDKVTVNYYVY---E 220 (492) Q Consensus 172 ~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~------------------------~~~~~----~~~~~~~~~~~---~ 220 (492) +.++-.+ +.+-.| ..+.+...+|.++..-. ...++ +.......|.. . T Consensus 147 ~~~pl~~-y~v~~d-~~G~vd~v~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~~v~~~v~pr~~~~~~~~~~~~ 224 (542) T protein:vir:78 147 KVYPLDR-YVIERD-GDGNVIEIITRELVDRSLLPAEFQKQSLLEGKDSNAVGEDGPKFGVAQGKGGRNDAEVFTCCKLV 224 (542) T ss_pred eEEecce-eEEeeC-CCCCeEEEeeeeecCHHHHHHhhccccCchHHHhhccccCCCeEEEEEEeecccCCccccccccC Confidence 4554444 444333 45666666665442110 00000 00000000000 0 Q ss_pred cceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec Q lcl|Aclame:pro 221 NGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN 295 (492) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g 295 (492) ......................+|..+|++.+. .+.+|+|-.++..+-+..++.+.-......+....|.+.+.- T Consensus 225 ~~~~s~~~e~~g~~v~~~~~e~g~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~pp~lv~~ 304 (542) T protein:vir:78 225 DGQHRWHQECDGKEIKGSRSSSPLKHSPWLPLRFNVVDGESYGRGRVEEFFGDLSSLDALTRSLIEGSAAAAKVVFMVSP 304 (542) T ss_pred CCeEEEEEEeccccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecc Confidence 000000000000000111233466677887653 346799999999999999999998899999998998877632 Q ss_pred CCcccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHH Q lcl|Aclame:pro 296 YDDQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYT 373 (492) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~ 373 (492) ........+.. ... +.+..+..++++.+. ...+.......++.++..|...-..-+. ..+...+|..+..... T Consensus 305 ~g~~~~~~~~~-~~~-g~iv~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~aFl~~~~---~d~~rvTAtEV~~r~~ 379 (542) T protein:vir:78 305 SATTKPQSLAR-AGT-GAIIQGRAEDVSVVQANKGADFRTVQEMIRDLSQRISDAFLILNV---RQSERTTATEVREVQM 379 (542) T ss_pred ccccchhhccc-CCC-ceeecCCccceeeeecccccchhHHHHHHHHHHHHHHHHhccccc---CCcccccHHHHHHHHH Confidence 11111111111 111 233334445666543 3346667777888888777443221111 1123445555554333 Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCC-cceeeeEEeCCCCCcC-HHHHHHHH----HHHhccCChHHH- Q lcl|Aclame:pro 374 NLNLKADK-----LARKAKVAIQELLWFVFEHFDIKG-EHKDVDISFNYNKVAN-TELQVQTA----QQSMGIVSHETV- 441 (492) Q Consensus 374 ~l~~k~~~-----~~~~~~~~l~~~~~li~~~~~~~~-~~~~i~i~f~~~~p~d-~~e~~~~~----~k~~g~vs~et~- 441 (492) .+.....- ....+..-+.+.+.++.+..-.+. ...-+++.+..++..- ..+.++.+ ..++.++..+.+ T Consensus 380 E~~~~LG~v~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~lv~~~~~s~La~~~r~~~~~~l~~~~~~i~~~~~p~~l~ 459 (542) T protein:vir:78 380 ELDRQLSGIYGSLTVELLTPYLNRKLHLMQRSKQLPSLPKGLVMPTVVAGLGGVGRGEDRAALIEFMQTVGQAMGPEALQ 459 (542) T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeeechHHHHHHHHHHHHHHHHHHHHHHhcCChhHH Confidence 22222211 122223333334443333222211 1112566665544321 11111111 111111222222 Q ss_pred --------HHhC---CCCC-----CHHHHHHHHHHHHHHHHHhh------ccccC-CCC-CCCCcCCCCC-------CCC Q lcl|Aclame:pro 442 --------LENH---PFVE-----DLQAELERIEQEQTEYNKQL------PNLDD-GGA-DSAQQQERSN-------NKE 490 (492) Q Consensus 442 --------l~~l---~~v~-----D~~~E~~ri~~E~~~~~~~~------~~~~~-~~~-~~~~~~~~~~-------~~~ 490 (492) +..+ -+|+ ..++|+++.+++.+..+.+. ..... ... ....+....+ ..+ T Consensus 460 ~~id~d~~~~~~a~~~Gvp~~~i~~s~e~~~~~~~q~q~~~~~~al~~~a~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~ 539 (542) T protein:vir:78 460 QFIDPTEFLKRLAAASGIDTLNLVKSPETMANEAQQAQQQQMTASLMGQAGQLAKSPIGEKMMQQINAPGQEAPAGPQTG 539 (542) T ss_pred hcCCHHHHHHHHHHHcCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhcCCCCcCCCCCCccc Confidence 2211 1222 12455555444432221111 11110 000 0000111111 111 Q ss_pred CC Q lcl|Aclame:pro 491 SE 492 (492) Q Consensus 491 ~e 492 (492) .| T Consensus 540 ~~ 541 (542) T protein:vir:78 540 ED 541 (542) T ss_pred cc Confidence 11 No 158 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=98.03 E-value=6.6e-06 Score=48.99 Aligned_cols=384 Identities=9% Similarity=0.061 Sum_probs=158.9 Q ss_pred HHHHHHHHHHHHH---HH--HHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC Q lcl|Aclame:pro 49 IVRYIKQHLEKLP---EI--SIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) Q Consensus 49 l~~~i~~~~~~~~---~~--~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 123 (492) +=.++.+..+..+ .. .-+...+..-.....-.. ..........+ .++ .=....|+..++-+.+-|+.+-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~g~~v~~~~a-l~~--~~V~~~v~~Ia~~iA~lp~~~~~ 75 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAW--QQGVKADPEAV-LSF--HAVFACISLISQDIAKMRLRLMQ 75 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcchh--hcCcccChHHh-hcc--HHHHHHHHHHHHhhccCceEEEE Confidence 0011110000000 00 000000000000000000 00000000000 011 11223566666666666766521 Q ss_pred --Cc---hh-HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCce Q lcl|Aclame:pro 124 --TD---DE-VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEEL 191 (492) Q Consensus 124 --~d---~~-~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 191 (492) .+ .. ....+..++. | ....+...+..+++.+|.||+.+-++..|++ .+..++|..+-++.++. +.+ T Consensus 76 ~~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~--g~~ 153 (454) T protein:vir:93 76 TDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADD--GEV 153 (454) T ss_pred eccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCC--CcE Confidence 11 11 1112222332 3 2346677778899999999999999888886 57888999998877643 222 Q ss_pred EEEEEeeeeccce--eEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHH Q lcl|Aclame:pro 192 EAFIRMYKLENET--KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFM 264 (492) Q Consensus 192 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~ 264 (492) .+. +....... ....+.... |++++ +...|.|.+.. T Consensus 154 ~y~--~~~~~~~~~~~~~~~~~~e-----------------------------------ViH~k~~~~~~~~~G~sp~~~ 196 (454) T protein:vir:93 154 FYR--ITPDRNCGITEAVTVPARE-----------------------------------VIHDRFNCFFHPLIGLPPVYA 196 (454) T ss_pred EEE--EEeccccccceeEEecCcc-----------------------------------eEEeccCCCCCCceeccHHHH Confidence 211 11000000 000011111 22222 12357777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEe--cC-CcccchhhHHhhh-------hccceecCCCCcceeeecccCHHHH Q lcl|Aclame:pro 265 YKTLIDAYNRRLSDLSNTFKDSNELTYVLK--NY-DDQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENS 334 (492) Q Consensus 265 v~~liD~~~~~~s~~~~~~~~~~~~~l~~~--g~-~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~l~~~~~~~~~ 334 (492) ....+.....+..-..+.+...+.|-.++. +. +.+....++..+. .++++.++.+.+++.++.......+ T Consensus 197 ~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~ 276 (454) T protein:vir:93 197 AGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQT 276 (454) T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEcccChhHHHH Confidence 666666555555444555555555555444 32 2222222322221 2345556666566555544444455 Q ss_pred HHHHHHHHHHHHHHhCCCCCCccccc-cchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceee Q lcl|Aclame:pro 335 KKYLDELYQKIMLFGQAVDFSSDKFG-SAPSG---VALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDV 410 (492) Q Consensus 335 ~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg---~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i 410 (492) .+..+..+..|+..=++|..-.+... ++-|. ....+....+.- ....++..+.+ .+- ......+ T Consensus 277 le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P----~~~~ie~~ln~-------~L~-~~~~~~~ 344 (454) T protein:vir:93 277 VEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQCLQT----LIESIELLLDE-------ALE-TGENEST 344 (454) T ss_pred HHHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHH-------hhc-CCCCcEE Confidence 56666777788888788865443221 11111 111111111111 11111222111 111 1122345 Q ss_pred eEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHH--------HHHHHHHHHHHHHHhhccccCCCCC Q lcl|Aclame:pro 411 DISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQA--------ELERIEQEQTEYNKQLPNLDDGGAD 478 (492) Q Consensus 411 ~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~--------E~~ri~~E~~~~~~~~~~~~~~~~~ 478 (492) ++.+...+..|..+.++.+.++ .|+++.-.++++++. +++-+. -+..+.+... .-++....+.. T Consensus 345 ~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 420 (454) T protein:vir:93 345 EFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQQNYSLEALSRRDA----REDPFASSGKT 420 (454) T ss_pred EeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccCccchHhhhccCc----ccCCCCCCccC Confidence 6666777788999999998887 478998888877653 121110 1111111100 00000111111 Q ss_pred CCCcCCCCCC----CCCC Q lcl|Aclame:pro 479 SAQQQERSNN----KESE 492 (492) Q Consensus 479 ~~~~~~~~~~----~~~e 492 (492) ....++.++. +..| T Consensus 421 ~~~~~~~~~~d~~~~~~e 438 (454) T protein:vir:93 421 ASVPQAVAASDGNKAITE 438 (454) T ss_pred CCCCCCCCCCCCCCCccC Confidence 1110111111 1111 No 159 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=98.01 E-value=7.1e-06 Score=48.83 Aligned_cols=407 Identities=13% Similarity=0.079 Sum_probs=183.0 Q ss_pred HHHHHHHHhcCCceeccCCCcHHHH------HHHHh----hcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc Q lcl|Aclame:pro 7 ISQVAQALIKGGNILYPSQPTQTEI------FDAIV----RTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDI 76 (492) Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i 76 (492) .+++.-.+ |. |.+.++-.... +...+ ..+.+|..+..+|+.... -...++..+.+...-+ T Consensus 1 ~~~~~d~~--g~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~---gd~~~~~~L~e~m~e~--- 70 (526) T protein:vir:99 1 MAQIVDVY--GN--PIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQ---GNLQAQAELFMDMEER--- 70 (526) T ss_pred CCeeECCC--CC--ccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhC---CCHHHHHHHHHHHHhh--- Confidence 11111110 11 11111100000 00000 012233333333332211 1122222222211000 Q ss_pred ccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCC------chhHHHHHHHHHhc--cHHHHHHHHH Q lcl|Aclame:pro 77 VKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT------DDEVVKRIDEVLGN--RFDDKLHSVL 148 (492) Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~------d~~~~~~l~~~~~n--~~~~~~~~~~ 148 (492) .....-.+.+...-+.+.+.++... +....+.++.++.+ +|.....++. T Consensus 71 -----------------------D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l 127 (526) T protein:vir:99 71 -----------------------DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL 127 (526) T ss_pred -----------------------ChHHHHHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHH Confidence 1223334555555667777777532 22344566666643 5776666655 Q ss_pred HHHHhcCeE-EEEEEeCCCCceE---EEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEeccee Q lcl|Aclame:pro 149 TGASNKGIE-WLHPYLDEEGEFK---LFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSL 224 (492) Q Consensus 149 ~~~~~~G~~-~~~v~~d~~g~~~---i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (492) ++.-||.+ ++++|.-.+|... +.+.+|+.+. |+...... +++ .......+. T Consensus 128 -da~~~G~s~~Eivw~~~~g~~~~~~l~~r~~~~f~--~~~~~~~~----l~~-~~~~~~g~~----------------- 182 (526) T protein:vir:99 128 -DGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQ--LNPEDQNE----LRL-RDNSPAGEA----------------- 182 (526) T ss_pred -HhhhhcceeEEEEEeecCCceeEEEeeeeccccee--eccCCCcE----EEe-cCCCCCcee----------------- Confidence 57888885 5666765555543 3344443221 22211101 000 000000010 Q ss_pred eeccccccccccccceeccCCccceEee--cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe---cCCcc Q lcl|Aclame:pro 225 IPDYSNNLENSKTHFSTGSWGKIPFIPF--KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK---NYDDQ 299 (492) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~iPvv~~--~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~---g~~~~ 299 (492) ..+++.+-.++- ..++.|.|.+..+....--=+..+.+++.-++.|..|+++.+ |.+.+ T Consensus 183 ----------------l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a~~~ 246 (526) T protein:vir:99 183 ----------------LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADE 246 (526) T ss_pred ----------------ecCCCeEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEEecCCCCCHH Confidence 112222212211 135668888876554444444567788888899999999987 33333 Q ss_pred cchhhHH---hhhhccceecCCCCcceeeecc-cCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHH-HHHHHH Q lcl|Aclame:pro 300 ELPEFKR---LLRYYGAIKVSDNGGVDTIQVE-VPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVAL-EFLYTN 374 (492) Q Consensus 300 ~~~~~~~---~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al-~~~~~~ 374 (492) +...... .+....+..++.+.++++++.. .....++.+++...+.|...--.-.++.+...|..+.-|+ +....- T Consensus 247 ek~~L~~av~~i~~d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g~vh~~v 326 (526) T protein:vir:99 247 EKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEV 326 (526) T ss_pred HHHHHHHHHHHHhhCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhHHHHHHHH Confidence 2222222 3344556778889999999854 4556789999999888876532222222111111111122 111222 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC-c-ceeeeEEeCCCCCcCHHHHHHHHHHHh--cc-CChHHHHHhCCCC Q lcl|Aclame:pro 375 LNLKADKLARKAKVAIQ-ELLWFVFEHFDIKG-E-HKDVDISFNYNKVANTELQVQTAQQSM--GI-VSHETVLENHPFV 448 (492) Q Consensus 375 l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~-~-~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~-vs~et~l~~l~~v 448 (492) ....+..-.+.+...+. ++++.++.+-.... . ..-..+.|....+.|..+.++.+.+++ |+ +|.+.+.+.++. T Consensus 327 ~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~Gi- 405 (526) T protein:vir:99 327 RHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI- 405 (526) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCccCHHHHHHHhCC- Confidence 33344455566666674 46766665532211 1 234578899999999999999998885 66 999999998874 Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCCCC--CcCCCCCCCCCC Q lcl|Aclame:pro 449 EDLQAELERIEQEQTEYNKQLPNLDDGGADSA--QQQERSNNKESE 492 (492) Q Consensus 449 ~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e 492 (492) ..+...-.-+..... ........+.... .+.......+++ T Consensus 406 p~~~~~e~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) T protein:vir:99 406 PQPAKNEPVLRSAAQ----PAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) T ss_pred CCCCCcccccCCCCC----CcccccccccccccccccccccCcchh Confidence 221110000000000 0000000000000 000000000111 No 160 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=97.98 E-value=8.4e-06 Score=48.41 Aligned_cols=365 Identities=11% Similarity=0.025 Sum_probs=154.3 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..++.+............. ....+...+.+. ...+. ..... .-+..+-.-.+|+ T Consensus 1 M~~f~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--------~~~~~-~v~~~---~al~~~~v~~~i~ 55 (386) T protein:vir:49 1 MPIFNITNLATESPPINQES-------------FFDIADSDFLAS--------LNSSE-WVSAE---NALKNSDLFSIIS 55 (386) T ss_pred CchhhhhccCCCCcccchhh-------------hhhhhhcccccc--------ccCCc-eechh---hhhccHHHHHHHH Confidence 22222222111111110000 000000000000 00000 00000 0011122234556 Q ss_pred HHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCC Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDK 186 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~ 186 (492) ..++-+.+-|+.+.... ...++..=.. .....+...+..+.+.+|.||+.+-++.+|++ .+..++|..+.+..++. T Consensus 56 ~ia~~ia~~p~~~~~~~--~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~ 133 (386) T protein:vir:49 56 QLSNDLATAKITTSRKQ--LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDN 133 (386) T ss_pred HHHHHhhhCceeeccch--hhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCC Confidence 66666666666654322 2222221111 13456677788899999999999989888876 57788888887665532 Q ss_pred CCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCc Q lcl|Aclame:pro 187 EHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISD 261 (492) Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~ 261 (492) . +.+.+.+.. ..........+.... |++|+. ...|.|. T Consensus 134 ~-~~~~y~~~~-~~~~~~~~~~~~~~e-----------------------------------vih~~~~~~~~~~~G~s~ 176 (386) T protein:vir:49 134 Q-NGLYYNITF-DDPHIAPKQHVPQND-----------------------------------ILHFRLLSVDGGLTSVSP 176 (386) T ss_pred C-ceEEEEEEE-cCccccceeEEcccc-----------------------------------EEEecCCCCCCccccccH Confidence 1 111111100 000000000000111 233322 1247788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec--CCc-ccchhhHHhh-----hhccceecCCCCcceeeecccCHHH Q lcl|Aclame:pro 262 IFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN--YDD-QELPEFKRLL-----RYYGAIKVSDNGGVDTIQVEVPVEN 333 (492) Q Consensus 262 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g--~~~-~~~~~~~~~~-----~~~~~~~~~~~~d~~~l~~~~~~~~ 333 (492) +..+...++....+..-..+.+...+.|-.+++- ... +...+..... ..++++.++++.+++-+........ T Consensus 177 l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~~ 256 (386) T protein:vir:49 177 LMALGREFNIQKASDKLTISALKNALNANGILKIKGGGLLDFKTKVSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQ 256 (386) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCChHHHHHHHHHHHHhccCCCCceecCCCceEEEccCChhHHH Confidence 8777777776665555555566666666665543 222 1111111111 1234455555555555544444455 Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeE Q lcl|Aclame:pro 334 SKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDI 412 (492) Q Consensus 334 ~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i 412 (492) +.+..+..+..|+..-++|..-.+..+ +..++..++..+.. .+.-.++.+...+...- ...+++ T Consensus 257 ~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~~~~~--------------~i~~~l~~i~~~~~~~l-~~~~~~ 321 (386) T protein:vir:49 257 LLSQADWTTGQFAKVYGIPESIVGGDGDQQSSLEMIYNIYFK--------------SVSRYLRPFVSEMSKKL-SCEVDV 321 (386) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhCCCCCccchHHHHHHHHHH--------------HHHHHHHHHHHHHHHHh-cchhcc Confidence 666778888888888888865543222 22333333322211 11112211111111000 012333 Q ss_pred EeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCC Q lcl|Aclame:pro 413 SFNYNKVANTELQVQTAQQS--MGIVSHETVLENHP---FVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSN 487 (492) Q Consensus 413 ~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~---~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (492) .....+-.|..+.+..+.++ +|+++.-.+++++. +..+ ++.+. .........+++ + T Consensus 322 ~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~~---~~~~~--------~~~~~~~~~gGd--------~ 382 (386) T protein:vir:49 322 DISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEILPK---ELPDG--------KNPNRTSLKGGE--------I 382 (386) T ss_pred cchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCCCC---cCcch--------hccCCCCCCCCC--------C Confidence 33444445666677777666 47888877777652 2221 11000 000000000000 1 Q ss_pred CCCC Q lcl|Aclame:pro 488 NKES 491 (492) Q Consensus 488 ~~~~ 491 (492) ++++ T Consensus 383 ~~~~ 386 (386) T protein:vir:49 383 NEQD 386 (386) T ss_pred CCCC Confidence 1111 No 161 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=97.97 E-value=8.5e-06 Score=48.37 Aligned_cols=402 Identities=11% Similarity=0.037 Sum_probs=156.1 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..++.++-....+..... .......+.- .-+.-|. ... ...... ++.-+.+.=.-..|+ T Consensus 1 Mg~~~~l~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~------~~~--~g~~v~---~~~al~~~~v~~~i~ 60 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAA--------EGRAWEPYDP-SIYNLGA------TAS--SGERVT---PHDALQVSAVFASVR 60 (457) T ss_pred Cchhhhhhccccccccccc--------cccccccchh-hhhhccc------ccc--CCceec---hHHhhccHHHHHHHH Confidence 2222222110000000000 0000000000 0000000 000 000000 000001111223455 Q ss_pred HHHHhhhcCCeeecCCch----hH-HHHHHHHH-h-c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEccc Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDD----EV-VKRIDEVL-G-N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAE 177 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~----~~-~~~l~~~~-~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~ 177 (492) .++.-+.+-|+++--..+ .. ...+..++ . | ....+...+..+.+.+|.||+.+-.+ .|++ .+..++|. T Consensus 61 ~ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~p~ 139 (457) T protein:vir:62 61 LLSETIATLPLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPT 139 (457) T ss_pred HHHHhHhhCceEEEEecCCccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCc Confidence 555555556766522111 11 11122222 1 2 24456777788899999999998555 4554 56777888 Q ss_pred ceEEEecCCCCCceEEEEEeeeeccc-eeE--EEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC Q lcl|Aclame:pro 178 QGIPIWTDKEHEELEAFIRMYKLENE-TKV--EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN 254 (492) Q Consensus 178 ~~~~i~d~~~~~~~~~~i~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n 254 (492) .+.+..+... .......+.|..... ... ..+.... |+++++ T Consensus 140 ~v~v~~~~~~-~~~~~~~~~y~~~~~g~~~~~~~~~~~e-----------------------------------iih~r~ 183 (457) T protein:vir:62 140 KIHVHMVMVD-GLRRKVFEAYDIDADGNEVLLGWFTPRD-----------------------------------VLHIPG 183 (457) T ss_pred ceEEEEeccC-CccceeEEEEEEccCCceeEEEeeCccc-----------------------------------eEEecC Confidence 7766443221 111111111111111 100 0011111 222221 Q ss_pred ----c-cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecCC Q lcl|Aclame:pro 255 ----N-DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVSD 318 (492) Q Consensus 255 ----n-~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~ 318 (492) . ..|.|.++.....+.....+..-..+.+...+.|-.++.-. +.+....++..+. .++++.+++ T Consensus 184 ~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~~~~~~~~~~~G~~nag~~~vl~~ 263 (457) T protein:vir:62 184 MMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLTE 263 (457) T ss_pred CCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCCCHHHHHHHHHHHHHHhcCccccCcceecCC Confidence 1 24777777767666666655555555666666666555432 2222222322221 233556666 Q ss_pred CCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 319 NGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGS-APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFV 397 (492) Q Consensus 319 ~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~-~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li 397 (492) +.+.+.++.......+.+..+..+..|+..=++|..-.+...+ +.++..++-....+...+ .+- +-..+++.+... T Consensus 264 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f~~~~--l~P-~~~~ie~~ln~~ 340 (457) T protein:vir:62 264 GAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAFTMFS--LRP-WLERIEAGFNRL 340 (457) T ss_pred CceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHHHHHH--HHH-HHHHHHHHHHhh Confidence 6565555544444455666677778888888888754433222 222222222111111111 111 111111111110 Q ss_pred HHHhccC-CcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCH--HHH-----HHHHHHHHH-- Q lcl|Aclame:pro 398 FEHFDIK-GEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDL--QAE-----LERIEQEQT-- 463 (492) Q Consensus 398 ~~~~~~~-~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~--~~E-----~~ri~~E~~-- 463 (492) ++... .....+++.+..-+-.|..+.++++.++ .|+++...+.++++. +++. +.- +..+....+ T Consensus 341 --L~~~~~~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~D~~~~~~n~~~~~~~~~~~ 418 (457) T protein:vir:62 341 --LFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEIGEEPEPE 418 (457) T ss_pred --hcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceeeecccccccccccccc Confidence 11111 1223455555666677999999998887 478999888887653 2322 111 111111100 Q ss_pred -HH-HHhhccccCCCCCCCC-c--CCCCCCCCCC Q lcl|Aclame:pro 464 -EY-NKQLPNLDDGGADSAQ-Q--QERSNNKESE 492 (492) Q Consensus 464 -~~-~~~~~~~~~~~~~~~~-~--~~~~~~~~~e 492 (492) .. ....+.......++.+ + +...++++.| T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 452 (457) T protein:vir:62 419 PAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETE 452 (457) T ss_pred ccCCCccCCCCccCCCCCCCCCCCCCCCcccccc Confidence 00 0000000000000000 0 0111111111 No 162 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=97.96 E-value=9.2e-06 Score=48.19 Aligned_cols=375 Identities=11% Similarity=0.026 Sum_probs=161.2 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |.+|+.+|......... ..+.|-...... ....+.. .-.+.=+.+.....+|+ T Consensus 1 Mgl~~~~f~~~~~~~~~----------------------~~~~~~~~~~~~-~~~~g~~----v~~~~al~~~~v~~~v~ 53 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTL----------------------TKISGIPSPAED-WAMHGDR----PGANSAMTLGAFYACVT 53 (409) T ss_pred CchhhhhhcCCCccccc----------------------ccccccccccch-hhccCcc----cchhhhhccHHHHHHHH Confidence 23333222211100000 000000000000 0000000 00000011233455677 Q ss_pred HHHHhhhcCCeeecCC--ch--hHHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEE-EeCCCCce-EEEEEccc Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHT--DD--EVVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHP-YLDEEGEF-KLFRVPAE 177 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~--d~--~~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v-~~d~~g~~-~i~~~~p~ 177 (492) .+++-+.+-|+.+--. +. ........+.. | ....+...+..+.+.+|.+|+++ +.+..|++ .+..++|. T Consensus 54 ~ia~~iA~lp~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~ 133 (409) T protein:vir:84 54 LLADTVASLSIDAYRKKDNVRIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPD 133 (409) T ss_pred HHHHhhhhCceEEEEecCCcccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCc Confidence 7777776667655211 11 11112222322 2 24566777888999999999876 46676765 57788888 Q ss_pred ceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC--- Q lcl|Aclame:pro 178 QGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN--- 254 (492) Q Consensus 178 ~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n--- 254 (492) .+.+............ ..|... + ..+.... |+++++ T Consensus 134 ~v~v~~~~~~~~~~~~--~~~~~~-g---~~~~~~d-----------------------------------vih~~~~~~ 172 (409) T protein:vir:84 134 CIHVTDAKDEDGDWIE--PVYRID-G---KVVPNHR-----------------------------------IMHIKRYPV 172 (409) T ss_pred eeEEEEcCCCcceEEE--EEecCC-c---eEEchhh-----------------------------------EEEecCCCC Confidence 8866543222211110 001100 0 0011111 222221 Q ss_pred --ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhh-----hhccceecCCCCccee Q lcl|Aclame:pro 255 --NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLL-----RYYGAIKVSDNGGVDT 324 (492) Q Consensus 255 --n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~ 324 (492) ...|.|.++.....++....+..-..+.+...+.|-.+++.. +.+....+.... ..++++.++++.+.+. T Consensus 173 ~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~ 252 (409) T protein:vir:84 173 AGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADLTPDQVKQTQKQWIQSHHNRRLPAVMSAGIKWQS 252 (409) T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHHHHhccCCCeeecCCCceEEE Confidence 125778787777777666655555555566666666665532 222222222211 1233445555544444 Q ss_pred eecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 325 IQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVAL-----EFLYTNLNLKADKLARKAKVAIQELLWFVF 398 (492) Q Consensus 325 l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al-----~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 398 (492) +........+.+..+..+..|+..-++|..-.+... ++.++..+ .+....+.-.+...+.. +.+. T Consensus 253 ~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~----l~~~----- 323 (409) T protein:vir:84 253 VSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVRHTLLPWLRCIEQA----LDTF----- 323 (409) T ss_pred ccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH----HHHh----- Confidence 433333344555666777888888888865443222 22222222 22222222222222222 2111 Q ss_pred HHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccC Q lcl|Aclame:pro 399 EHFDIKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLDD 474 (492) Q Consensus 399 ~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~ 474 (492) + .....+++.+..-+-.|..+.++++.++ .|+++.-.++++++.- ++-+.-+... ....... .. T Consensus 324 --L---~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~------n~~~~~~-~~ 391 (409) T protein:vir:84 324 --L---PRGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPM------NFVPLGY-VP 391 (409) T ss_pred --c---cCCCeEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecc------ccccccc-CC Confidence 1 1123466666777778999999998887 4889988888877542 2111000000 0000000 01 Q ss_pred CCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 475 GGADSAQQQERSNNKESE 492 (492) Q Consensus 475 ~~~~~~~~~~~~~~~~~e 492 (492) ......+.+..+..++++ T Consensus 392 ~~~~~~~~~~~~~~~gn~ 409 (409) T protein:vir:84 392 PEEPAQEPQPNSATEGNK 409 (409) T ss_pred ccccCcCCCCCCccCCCC Confidence 111111111222222233 No 163 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=97.94 E-value=9.9e-06 Score=48.03 Aligned_cols=375 Identities=10% Similarity=0.022 Sum_probs=162.4 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..|+.++.-.+.... .....+...+.+..+ ... + ...... .-+.+.-...+|+ T Consensus 1 Mg~f~~lf~r~~~~~~----------------~~~~~~~~~~~~~~~-----~~~-g-~~v~~~---~al~~~~v~~~i~ 54 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPV----------------TTPAELADAIGLSYD-----TYT-G-KQISSQ---RAMRLTAVFSCVR 54 (414) T ss_pred CchhhhhhccCccCcc----------------cchhhHhHhhccCcc-----ccC-C-ceechh---hhhccHHHHHHHH Confidence 3444433322111100 000111122211110 000 0 000000 0011223445666 Q ss_pred HHHHhhhcCCeeecCCch-----hH-HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcc Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDD-----EV-VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPA 176 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~-----~~-~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p 176 (492) ..+.-+.+-|+.+--.++ .. ......+.. | ....+...+....+.+|.||+++..+ .|++ .+..++| T Consensus 55 ~Ia~~ia~~p~~~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~ 133 (414) T protein:vir:44 55 VLAESVGMLPCNLYHLNGSLKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDP 133 (414) T ss_pred HHHHHhccCceEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcC Confidence 666666666765521111 11 111222221 2 34566777888999999999998776 4766 5788889 Q ss_pred cceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec--- Q lcl|Aclame:pro 177 EQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK--- 253 (492) Q Consensus 177 ~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~--- 253 (492) ..+.+.+++. +.+.+. +....+.. ..+.... |+++. T Consensus 134 ~~v~~~~~~~--~~~~y~---~~~~~g~~-~~~~~~e-----------------------------------vih~~~~~ 172 (414) T protein:vir:44 134 GCVVPKLNSS--WEPVYQ---VTFPDGST-DVLSQED-----------------------------------IWHVRTLT 172 (414) T ss_pred ceEEEEECCC--CcEEEE---EEecCceE-EEEcccc-----------------------------------EEEecCCC Confidence 8888777643 222211 11111110 0111111 12221 Q ss_pred -CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecCCCCc Q lcl|Aclame:pro 254 -NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVSDNGG 321 (492) Q Consensus 254 -nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~d 321 (492) +...|.|.+......++....+..-..+.+...+.|-.++.-. +.+...+++..+. .++++.++++.+ T Consensus 173 ~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~ 252 (414) T protein:vir:44 173 LDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYERLKKDFEERHTGLGNAHRPMILEMGLD 252 (414) T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCce Confidence 1235778787777777666666555666666666666655532 2233333333221 123455555555 Q ss_pred ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 322 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH 400 (492) Q Consensus 322 ~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 400 (492) .+.+........+.+..+..+..|+..-++|..-.+..+ ++-|. ++... ......+|.-.++.+... T Consensus 253 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n--~e~~~----------~~~~~~~l~P~~~~ie~~ 320 (414) T protein:vir:44 253 WKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNN--IEELG----------LGFINYSLVPYLTRIEQR 320 (414) T ss_pred EEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc--HHHHH----------HHHHHHHHHHHHHHHHHH Confidence 554443333344555666677778777778764433221 11111 11110 111222222222222222 Q ss_pred hcc----CC--cceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 401 FDI----KG--EHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLP 470 (492) Q Consensus 401 ~~~----~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~ 470 (492) ++. .. ....+++.+...+..|..+.++++.++ .|+++.-.+.++++.- +.-+.-+.. .... T Consensus 321 ln~~L~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~---------~n~~ 391 (414) T protein:vir:44 321 INTGLVRKSKQGVFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTP---------MNMT 391 (414) T ss_pred HHhhcCCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeccc---------cccc Confidence 111 11 122344555566677899999999887 4789998888887542 111100000 0000 Q ss_pred cccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 471 NLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~e 492 (492) .......+.+++.+..+.+++- T Consensus 392 ~~~~~~~~~~~~~~~~~~d~~~ 413 (414) T protein:vir:44 392 TKPSDGSKAGKQKDNANADETT 413 (414) T ss_pred ccCCccccCCCCCCCCCCCCCC Confidence 0011111111111111111111 No 164 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=97.91 E-value=1.1e-05 Score=47.68 Aligned_cols=313 Identities=13% Similarity=0.065 Sum_probs=135.5 Q ss_pred hhcCCeeecCCchhHHH-HHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCC Q lcl|Aclame:pro 114 IVGKPIAFKHTDDEVVK-RIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDK 186 (492) Q Consensus 114 l~g~~~~~~~~d~~~~~-~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~ 186 (492) +..-|+.+.-.++.... ....+.. | .-..+...+...++.+|.||+++-++..|.+ .+..++|..+-++.++. T Consensus 1 ia~lp~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~~~~~~ 80 (348) T protein:vir:93 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (348) T ss_pred CcccceEeEecCcCcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEEEEeCC Confidence 22234433211111111 1122211 2 2345566778889999999999999988887 56777887777665532 Q ss_pred CCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCc Q lcl|Aclame:pro 187 EHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISD 261 (492) Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~ 261 (492) .+.+.+ ++ ....+..+ .+... -|+++++ ...|.|. T Consensus 81 -~~~~~y--~~-~~~~g~~~-~~~~~-----------------------------------eiih~r~~~~~~~~~G~s~ 120 (348) T protein:vir:93 81 -SRELYY--SI-HAATGNKL-IVHNM-----------------------------------DMLHFKHIVASNMVQGISP 120 (348) T ss_pred -CcEEEE--EE-EcCCCeEE-EEccc-----------------------------------cEEEecCCCCCCceeeccH Confidence 111111 00 00111100 01111 1233322 1246777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCce-EEEe-cC--CcccchhhHHhh----h-hccceecCCCCcceeeecccCHH Q lcl|Aclame:pro 262 IFMYKTLIDAYNRRLSDLSNTFKDSNELT-YVLK-NY--DDQELPEFKRLL----R-YYGAIKVSDNGGVDTIQVEVPVE 332 (492) Q Consensus 262 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~-l~~~-g~--~~~~~~~~~~~~----~-~~~~~~~~~~~d~~~l~~~~~~~ 332 (492) ++.+...++..+.+.. . .+..+..+- +++. +. +.+....+...+ . .++++.++++.+++.+....... T Consensus 121 ~~~~~~~i~~~~~~~~-~--~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~ 197 (348) T protein:vir:93 121 IDVLKNTTDFDNAVRT-F--NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSE 197 (348) T ss_pred HHHHHHHHHHHHHHHH-H--HHHhcCCCceeEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHH Confidence 7666665554433321 1 233333332 2222 22 122222222221 1 22345555555555554433344 Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCC-- Q lcl|Aclame:pro 333 NSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-----IKG-- 405 (492) Q Consensus 333 ~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-----~~~-- 405 (492) .+.+..+..+..|+..=++|..-.+..+ ..+...++.....+ ...+|.=+++.+...++ ... T Consensus 198 q~~e~~~~~~~~Ia~~fgVP~~~lg~~~-~~~~~~~e~~~~~~----------~~~~l~P~~~~ie~~l~~~l~~~~~~~ 266 (348) T protein:vir:93 198 DIVASENLTRERVANVFQLPSIFLNARS-NTNFAKNEELNRFY----------LQHTLLPIVKQYEEEFNRKLLTKTDRE 266 (348) T ss_pred HHHHHHHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhCCccccc Confidence 5566666777888888888865443221 11211222111111 12222222222222211 111 Q ss_pred cceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCC Q lcl|Aclame:pro 406 EHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQ 481 (492) Q Consensus 406 ~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~ 481 (492) ....+++.+..-+..|..+.++++.++. |+++.-.+++.++. +++-+.-+- .....+. ....+. T Consensus 267 ~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~---------~~n~~~~---~~~~~~ 334 (348) T protein:vir:93 267 KNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLI---------SGDLYPI---DTPLEL 334 (348) T ss_pred CcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcCeEee---------ccccccc---ccchhh Confidence 1233555556666778999999988874 78999888887754 121110000 0000000 001111 Q ss_pred cCCCCCCCCCC Q lcl|Aclame:pro 482 QQERSNNKESE 492 (492) Q Consensus 482 ~~~~~~~~~~e 492 (492) +....+++++. T Consensus 335 ~~~~~gg~~n~ 345 (348) T protein:vir:93 335 RKSLKGGDKNV 345 (348) T ss_pred cccccCCCCCc Confidence 11111111111 No 165 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=97.89 E-value=1.2e-05 Score=47.51 Aligned_cols=396 Identities=11% Similarity=0.049 Sum_probs=156.6 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEK-LPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLV 107 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 107 (492) |..+..++ .+.... ...... ..|-........-..............+ .|+ .=.-.+| T Consensus 1 Mg~~~~l~-----------------~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~V~~~~a-l~~--~~V~~~v 59 (457) T protein:vir:13 1 MGFWSALF-----------------GRGHSPALDGIEA-RAWEPYDPSIYNLGAVAASGETVTPHDA-LQV--SAVFASV 59 (457) T ss_pred Cchhhhhh-----------------ccccccccccccc-ccccccchHHHhhcccccCCceechHHh-hcc--HHHHHHH Confidence 11121111 110000 000000 0000000000000000000000000000 011 1122356 Q ss_pred HHHHHhhhcCCeeecCCc-----hhHHHHHHH-HHh--cc--HHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcc Q lcl|Aclame:pro 108 DQKVSYIVGKPIAFKHTD-----DEVVKRIDE-VLG--NR--FDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPA 176 (492) Q Consensus 108 d~~~~~l~g~~~~~~~~d-----~~~~~~l~~-~~~--n~--~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p 176 (492) +.++.-+.+-|+++--.. +.....+-. ... |. ...+...+..+.+.+|.+|+.+-.+ .|++ .+..++| T Consensus 60 ~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~~l~~l~p 138 (457) T protein:vir:13 60 RLLSETIATLPLSTYSKRGGSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIVGLDVLDP 138 (457) T ss_pred HHHHHhhccCceEEEEecCCcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcc Confidence 666666666676652111 111112222 221 12 2356677788899999999988655 4554 5677888 Q ss_pred cceEEEecCCCCCceEEEEEeeeeccc-eeE--EEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec Q lcl|Aclame:pro 177 EQGIPIWTDKEHEELEAFIRMYKLENE-TKV--EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK 253 (492) Q Consensus 177 ~~~~~i~d~~~~~~~~~~i~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~ 253 (492) ..+.+..+........ ..+.|..... ... ..+.... |++++ T Consensus 139 ~~v~v~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~d-----------------------------------iih~~ 182 (457) T protein:vir:13 139 TKIHVHMVMVDGLRRK-VFEAYDIDADGNEVLLGWFTPRD-----------------------------------VLHIP 182 (457) T ss_pred CceEEEEecCCCccce-eEEEEEEecCCceeeEEeeCccc-----------------------------------eEEec Confidence 8877654432211111 1111111111 100 0011111 12221 Q ss_pred C-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecC Q lcl|Aclame:pro 254 N-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVS 317 (492) Q Consensus 254 n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~ 317 (492) + ...|.|.++.....|+....+..-..+.+...+.|-.++.-. +.+...+++..+. .++++.++ T Consensus 183 ~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~~~~~~~~~~~g~~nag~~~vl~ 262 (457) T protein:vir:13 183 GMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTMSEEGLARAREAWRAANSGVDNAHRVALLT 262 (457) T ss_pred CCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCCCHHHHHHHHHHHHHHhcCccccCcceecC Confidence 1 135778887777777665555555555566666666665532 2222222222221 23456666 Q ss_pred CCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 318 DNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGS-APSGVALEFLYTNLNLKADKLARKAKVAIQELLWF 396 (492) Q Consensus 318 ~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~-~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~l 396 (492) ++.+.+.++.......+.+..+..+..|+..=++|..-.+...+ +.++..++-....+ ...+|.-.++. T Consensus 263 ~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~~~f----------~~~tl~P~~~~ 332 (457) T protein:vir:13 263 EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQNIAF----------TMFSLRPWLER 332 (457) T ss_pred CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHHHHH----------HHHHHHHHHHH Confidence 66666655544344445566667777888777888654432222 22122222211111 11111111111 Q ss_pred HHHHh-----ccC-CcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCH--HHH-----HHHHH Q lcl|Aclame:pro 397 VFEHF-----DIK-GEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDL--QAE-----LERIE 459 (492) Q Consensus 397 i~~~~-----~~~-~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~--~~E-----~~ri~ 459 (492) +...+ ... .....+++.++..+-.|..+.++++.++ .|+++.-.++++++. +++. +.- +..+. T Consensus 333 ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g~~d~~~~~~n~~~~~ 412 (457) T protein:vir:13 333 IEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEKYRVPLNLGEVG 412 (457) T ss_pred HHHHHHHhhcCccccCceeEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceeecccccccc Confidence 11111 111 1223455666677778999999998877 588998888877643 2221 111 11111 Q ss_pred HHHHHHHHhhccc-cCCCCCCCCcCC----------CCCCCCCC Q lcl|Aclame:pro 460 QEQTEYNKQLPNL-DDGGADSAQQQE----------RSNNKESE 492 (492) Q Consensus 460 ~E~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~e 492 (492) +..+.......+. .....+..++.+ ...++++| T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~ 456 (457) T protein:vir:13 413 EEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGATEEDDEDD 456 (457) T ss_pred ccccccccCCCCCCCCCccccCCCCCCCCCCccccCCCCccccc Confidence 1100000000000 001111111111 01111111 No 166 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=97.89 E-value=1.2e-05 Score=47.51 Aligned_cols=423 Identities=11% Similarity=0.077 Sum_probs=190.1 Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHH Q lcl|Aclame:pro 31 IFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQK 110 (492) Q Consensus 31 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~ 110 (492) .-+..++.+.+.+.+.+...++-++.+.-..+.+.+.+|..-. +. +.. + ..+...|+..+-+...++.+ T Consensus 1 ~~~~~~~~~~~~~~l~~r~~~Lk~~R~~~e~~w~e~~~~tlP~--~~--~~~--~-----~~~~~~~~~dstg~~a~~~L 69 (515) T protein:vir:70 1 MQDTILEYGGQRSKIPKLWEKFSKKRSPYLDRAKHFAKLTLPY--LM--NNK--G-----DNETSQNGWQGVGAQATNHL 69 (515) T ss_pred CcchhhhhcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc--cc--CCC--C-----CcccccccccchHHHHHHHH Confidence 1223345677766666666665544444444555556665441 11 000 0 01112245566677777777 Q ss_pred HHhhhcC--C-----eeecCCch-------------hHHHHH--------HHHHhccHHHHHHHHHHHHHhcCeEEEEEE Q lcl|Aclame:pro 111 VSYIVGK--P-----IAFKHTDD-------------EVVKRI--------DEVLGNRFDDKLHSVLTGASNKGIEWLHPY 162 (492) Q Consensus 111 ~~~l~g~--~-----~~~~~~d~-------------~~~~~l--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~ 162 (492) ++.|++- | +++...+. +..+.+ ..+..++|.....++.++...+|.+.+++ T Consensus 70 Aa~l~~~ltpp~~~WF~l~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~- 148 (515) T protein:vir:70 70 ANKLAQVLFPAQRSFFRVDLTAKGEKVLDDRGLKKTQLATIFARVETTAMKALEQRQFRPAIVEVFKHLIVAGNCLLYK- 148 (515) T ss_pred HHHHHHhhcCCCCcccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhHCeEEEEE- Confidence 7777542 2 22222211 111222 22344688889999999999999986554 Q ss_pred eCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeec----------------------cceeEEEEecceEEEEEEe Q lcl|Aclame:pro 163 LDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLE----------------------NETKVEYWDKVTVNYYVYE 220 (492) Q Consensus 163 ~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 220 (492) |+++.+ +.++-.+ |.+-.| ..+.+...+|..+.. ....+++|+.. .+. . T Consensus 149 -d~~~~~--~~~pl~~-y~v~~d-~~G~v~~i~rr~~~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i~~~v---~~~-~ 219 (515) T protein:vir:70 149 -PSKGAM--SAVPMHH-YVVNRD-TNGDLMDVILLQEKALRTFDPATRMAIEVGMKGKKCKEDDNVKLYTHA---QYA-G 219 (515) T ss_pred -eCCCCe--EEEEcCe-EEEeeC-CCcCeeEEEeeeeccHHHHHHhhhhhhhhhhhhhhcCCCCceEEEEEE---Eec-C Confidence 666654 4454444 444443 445565555543211 11122333211 000 0 Q ss_pred cceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec Q lcl|Aclame:pro 221 NGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN 295 (492) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g 295 (492) .+......... +.........++..+|++.+. ++.+|+|-.+...+-+..++.+.-...........|.+.+.- T Consensus 220 ~~~~~~~~e~d-~~~~~~es~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~a~~p~~lv~~ 298 (515) T protein:vir:70 220 EGFWKINQSAD-DIPVGKESRIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAMARGAALMADIKYLIRP 298 (515) T ss_pred CCceEEEEecC-ceeeccccccccccCCceeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhcCCCeeeCc Confidence 11111111111 111111222335567776653 346799999999999999999988888888888888877642 Q ss_pred CCcccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHH Q lcl|Aclame:pro 296 YDDQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYT 373 (492) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~ 373 (492) ........+.. ...+.+..+..++++.+. +..+.......++.++..|...-....... ..+...++..+.. T Consensus 299 ~g~~~~~~l~~--~~~g~iv~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~-rd~~rvTAtEV~~--- 372 (515) T protein:vir:70 299 GSQTDVDHFVN--SGTGEVITGVAEDIHIVQLGKYADLTPISAVLEVYTRRIGVIFMMETMTR-RDAERVTAVEIQR--- 372 (515) T ss_pred ccccchhhccc--cCCceeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhhhhhhc-cCCccccHHHHHH--- Confidence 11111111111 111233344455666554 334567777778888877744222111111 1122345555543 Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHhccCCcceeeeEEeCCCCCcCHHHHHH---HHHHH---hc----- Q lcl|Aclame:pro 374 NLNLKADKLARKAKVAIQELL--------WFVFEHFDIKGEHKDVDISFNYNKVANTELQVQ---TAQQS---MG----- 434 (492) Q Consensus 374 ~l~~k~~~~~~~~~~~l~~~~--------~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~---~~~k~---~g----- 434 (492) +..+++..++..+.++- .++..-..-..-...+++.+.. +.+.+...+ .+... .+ T Consensus 373 ----r~~E~~~~LGpv~srL~~Ell~Pli~r~~~~~~p~~P~~~v~~~~vs--~l~~L~r~q~~~~i~~~~q~i~~~~~~ 446 (515) T protein:vir:70 373 ----DALEIEQNMGGVYSLFAMTMQTPIAMWGLQEAGDSFTSELVDPVIVT--GIEALGRMAELDKLANFAQYMSLPQTW 446 (515) T ss_pred ----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhcccceeh--hHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 34455555665555532 2221111111111123333322 222222222 22111 11 Q ss_pred ------cCCh----HHHHHhCCCC---CCHHHHHHHHHHHHHHHHHhhccccCC---CCCCCCcCCCCC Q lcl|Aclame:pro 435 ------IVSH----ETVLENHPFV---EDLQAELERIEQEQTEYNKQLPNLDDG---GADSAQQQERSN 487 (492) Q Consensus 435 ------~vs~----et~l~~l~~v---~D~~~E~~ri~~E~~~~~~~~~~~~~~---~~~~~~~~~~~~ 487 (492) .+.. +.+...++.- --.++|++.+.+++++.++......+. ......+.-+.+ T Consensus 447 ~p~~~~~id~d~~~~~~a~~~g~p~~~~rs~eev~~~r~q~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 515 (515) T protein:vir:70 447 PEPAQRAIRWGDYMDWVRGQISAELPFLKSEEEMQQEMAQQAQAQQEAMLNEGVAKAVPGVIQQEMKEG 515 (515) T ss_pred ChhHHhhCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhccC Confidence 1111 2222232211 113567777766654433322211111 111111111111 No 167 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=97.89 E-value=1.2e-05 Score=47.49 Aligned_cols=403 Identities=13% Similarity=0.091 Sum_probs=181.7 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) ++.-.| ++.+..-.-+.+.+|...|. -+.+|..+..+++.... -...++.. .|+- +. T Consensus 12 ~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~gltp~~l~~il~~a~~---gd~~~~~~---L~ed---m~--- 68 (526) T protein:vir:79 12 IRPQQL-REPQTSRLAGLAKEFAQHPA----------KGLTPAKLARILVEAEQ---GNLQAQAE---LFMD---ME--- 68 (526) T ss_pred cCcccc-chhhhhhhhhhhhhcccCCC----------CCcCHHHHHHHHHHhhC---CCHHHHHH---HHHH---HH--- Confidence 110000 11111111111112111110 01222222233322211 01111111 1110 00 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCC------chhHHHHHHHHHhc--cHHHHHHHHHHHHH Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT------DDEVVKRIDEVLGN--RFDDKLHSVLTGAS 152 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~------d~~~~~~l~~~~~n--~~~~~~~~~~~~~~ 152 (492) . ......-.+.+....+.+.+.++... +....+.++.++.+ +|.....++.. +. T Consensus 69 ------------e-----~D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-A~ 130 (526) T protein:vir:79 69 ------------E-----RDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GI 130 (526) T ss_pred ------------h-----hChHHHHHHHHHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHHh-hh Confidence 0 01223445566666667777777532 22344556666654 46666555544 77 Q ss_pred hcCeE-EEEEEeCCCCceE---EEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecc Q lcl|Aclame:pro 153 NKGIE-WLHPYLDEEGEFK---LFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDY 228 (492) Q Consensus 153 ~~G~~-~~~v~~d~~g~~~---i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (492) -||.+ ++++|.-.+|... +...+|+.+. |++.....+ ++ .......+. T Consensus 131 ~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~F~--~~~~~~~~l----~~-~~~~~~g~~--------------------- 182 (526) T protein:vir:79 131 GHGYSCIELEWALQGREWMPLAFHHRPQSWFQ--LNPEDQNEL----RL-RDNSPAGEA--------------------- 182 (526) T ss_pred hhcceeEEEEEeecCCceeEEEeeeecccceE--eccCCCcEE----Ee-cCCCCCcee--------------------- Confidence 88885 5666765555543 3334443222 232111110 00 000001111 Q ss_pred ccccccccccceeccCCccceEee--cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec---CCcccchh Q lcl|Aclame:pro 229 SNNLENSKTHFSTGSWGKIPFIPF--KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN---YDDQELPE 303 (492) Q Consensus 229 ~~~~~~~~~~~~~~~~g~iPvv~~--~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g---~~~~~~~~ 303 (492) ..+++.+-.++- ..++.|.|.+..+...---=+..+.+++.-++.|..|+++.+= .+.++... T Consensus 183 ------------l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~~igky~~~a~~~ek~~ 250 (526) T protein:vir:79 183 ------------LQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKAT 250 (526) T ss_pred ------------ecCCceEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceEEEecCCCCCHHHHHH Confidence 112222211211 1355678888765444433344667888888999999999873 33332222 Q ss_pred hHH---hhhhccceecCCCCcceeeecc-cCHHHHHHHHHHHHHHHHHHhCCCCCCcc----ccccchhHHHHHHHHHHH Q lcl|Aclame:pro 304 FKR---LLRYYGAIKVSDNGGVDTIQVE-VPVENSKKYLDELYQKIMLFGQAVDFSSD----KFGSAPSGVALEFLYTNL 375 (492) Q Consensus 304 ~~~---~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~i~~l~~~i~~~a~~p~~~~~----~~~~~~Sg~Al~~~~~~l 375 (492) ... .+....+..++.+.++++++.. .....++.+++...+.|...--.-.++.+ +.|+...|..- ..-. T Consensus 251 L~~av~~i~~da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~gS~a~g~vh---~~v~ 327 (526) T protein:vir:79 251 LLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVH---NEVR 327 (526) T ss_pred HHHHHHHHhcCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhccccccCcchhhhhHHHH---HHHH Confidence 222 3444566778899999999854 45567899999998888765322222221 22222222211 1123 Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhccCC-c-ceeeeEEeCCCCCcCHHHHHHHHHHHh--cc-CChHHHHHhCCCCC Q lcl|Aclame:pro 376 NLKADKLARKAKVAIQ-ELLWFVFEHFDIKG-E-HKDVDISFNYNKVANTELQVQTAQQSM--GI-VSHETVLENHPFVE 449 (492) Q Consensus 376 ~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~-~-~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~-vs~et~l~~l~~v~ 449 (492) ...+..-.+.+...+. ++++-++.+-.... . ..-..+.|....+.|..+.++.+.+++ |+ +|.+.+.+.++. . T Consensus 328 ~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~i~~~~i~e~~gi-p 406 (526) T protein:vir:79 328 HDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGI-P 406 (526) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCcCCHHHHHHHhCC-C Confidence 3334445556666664 46666665533211 2 223567899999999999999999885 66 999999998874 2 Q ss_pred CHHHHHHHHHHHHHHHHHhhccccCCCCCCCC--cCCCCCCCCCC Q lcl|Aclame:pro 450 DLQAELERIEQEQTEYNKQLPNLDDGGADSAQ--QQERSNNKESE 492 (492) Q Consensus 450 D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e 492 (492) .++.. +.+...... ........+..... ........+++ T Consensus 407 ~~~~~-e~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (526) T protein:vir:79 407 QPAKN-EPVLRPAAQ---PAILSRQHGQRVAALATIVGPRYGDQQ 447 (526) T ss_pred CCCCc-hhhccccCC---ccccccccccccccccccccccCchhh Confidence 22210 001000000 00000000000000 00000111111 No 168 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=97.84 E-value=1.5e-05 Score=46.99 Aligned_cols=426 Identities=10% Similarity=0.087 Sum_probs=162.5 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHH---HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEI---FDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIV 77 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~ 77 (492) |-|.+= ++-. + .+|.-|...|.-... +......-.+ .-+|..+|+........+.....+..+.-... T Consensus 54 ~a~~~p---~~~~-~-~~~~~~~~~p~~~~~~~~~~~~l~~~~~----npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~ 124 (576) T protein:vir:96 54 QAYAEP---FLEV-M-DTNPEFRTKRSYMKNSDNLHDVLKQFGN----NPILNAIILTRSNQVAMYCQPSRYNERGLGFE 124 (576) T ss_pred chhhcc---eeee-e-ecCCCccccCcchhhhhhhHHHHHHhhc----CHHHHHHHHHHHHHHHhhhhhhhhccccccce Confidence 333221 1000 1 345455555532221 1111110001 12466666665555555543333322211111 Q ss_pred cccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhccHHHHHHHHHHHHHhcCeE Q lcl|Aclame:pro 78 KEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGNRFDDKLHSVLTGASNKGIE 157 (492) Q Consensus 78 ~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n~~~~~~~~~~~~~~~~G~~ 157 (492) -+.+............ ++ ..++....++...+. + +...+..+...+..+.+.+|.+ T Consensus 125 i~lk~~~~~~~~~~~~---~~------~~l~~~l~~~~~~~~------p---------~~~t~~~f~~~lv~dlll~Gna 180 (576) T protein:vir:96 125 VRMRDLDAEPGKKEKE---EI------KRIENFILNTGRDKD------I---------DRDSFQSFCRKIVRDTYTYDQV 180 (576) T ss_pred eEEecCcCccchhhhH---hh------hhHHhhHhhccCCCC------C---------ccccHHHHHHHHHHHHHhcCCe Confidence 0110000000000000 00 001111111111110 0 0013455677788899999999 Q ss_pred EEEEEeCCC--Cce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccccccc Q lcl|Aclame:pro 158 WLHPYLDEE--GEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLEN 234 (492) Q Consensus 158 ~~~v~~d~~--g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (492) |+.+..+.+ |++ .+..++|..+.++.+... .......+++....+.....+....+.+.. T Consensus 181 ~~~i~~~rd~~g~~~~L~pl~p~~V~v~~~~dg-~~~~~~~~~~~~~~~~~~~~~~~~dii~~~---------------- 243 (576) T protein:vir:96 181 NFEKVFNKKNATTMDKFIAVDPSTIFYATDKNG-KIIKGGKRFVQVINKKVVASFTSREMAMGI---------------- 243 (576) T ss_pred EEEEEEecCCCCceEEEEEeCCceeEEEECCCC-ceeeeeeEEEEecCCceEEEecccceEEEe---------------- Confidence 998876554 444 578899999988776432 111111222222111111111111111100 Q ss_pred ccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE--ecC---CcccchhhHHhhh Q lcl|Aclame:pro 235 SKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL--KNY---DDQELPEFKRLLR 309 (492) Q Consensus 235 ~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~--~g~---~~~~~~~~~~~~~ 309 (492) ....+-+ .....|.|.++.....++....+..-..+.+...+.|-.++ .|. +.+....++..+. T Consensus 244 ---------~~~~~d~--~~~~~G~Spi~~a~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~ 312 (576) T protein:vir:96 244 ---------RNPRTEL--SSSGYGLSEVEIAMKQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWK 312 (576) T ss_pred ---------ecCCCCc--ccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHH Confidence 0000000 01224777777766666665555555555566656665443 342 2222233333221 Q ss_pred --------hcc-ceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-c----chhHHHHHHHHHHH Q lcl|Aclame:pro 310 --------YYG-AIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-S----APSGVALEFLYTNL 375 (492) Q Consensus 310 --------~~~-~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~----~~Sg~Al~~~~~~l 375 (492) .++ .+.++++.+.+.++.......+.+..+..+..|+..=++|..-.+... + +..+.++.+. .. T Consensus 313 ~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~s--n~ 390 (576) T protein:vir:96 313 SSFSGINGSWQVPVVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEA--DP 390 (576) T ss_pred HHhccccccccceeecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccc--cH Confidence 122 244555555555554445566677778888888888888864432111 0 0000111100 00 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcceeeeEEeCCCCCcCHHHHHHHHHHH-hccCChHHHHHhCCC--CC Q lcl|Aclame:pro 376 NLKADKLARKAKVAIQELLWFVFEHFDI---KGEHKDVDISFNYNKVANTELQVQTAQQS-MGIVSHETVLENHPF--VE 449 (492) Q Consensus 376 ~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~i~f~~~~p~d~~e~~~~~~k~-~g~vs~et~l~~l~~--v~ 449 (492) . ......+..+|.-+++.+...++. ......+.+.|.+.-+.+.++..+..... .|+++.-.+.++++. ++ T Consensus 391 e---~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~f~r~d~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~pie 467 (576) T protein:vir:96 391 G---KKQQQSQNKGLQPLLRFIEDLINTHIISEYSDKYVFQFVGGDTKSELDKIKILQEEVKTYKTVNEARKEKGLKPIE 467 (576) T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhhhchhccCceEEEeccCCHHHHHHHHHHHHHHhcCccCHHHHHHHhCCCCCC Confidence 0 001111122222222222111110 11123456678776666666655544332 488998888777643 22 Q ss_pred CHHHH-----HHHHH---------HH-HHHHHHhhc-cccCCCCCCC-C---cCCCCCCCCCC Q lcl|Aclame:pro 450 DLQAE-----LERIE---------QE-QTEYNKQLP-NLDDGGADSA-Q---QQERSNNKESE 492 (492) Q Consensus 450 D~~~E-----~~ri~---------~E-~~~~~~~~~-~~~~~~~~~~-~---~~~~~~~~~~e 492 (492) +-+.- +..+. .+ +++...... ....+..... + ++...+.+..| T Consensus 468 gGD~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~ 530 (576) T protein:vir:96 468 GGDVLLDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGRESND 530 (576) T ss_pred CcceeccccccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCCCCccccccccc Confidence 11100 00000 00 000000000 0001111100 0 11111111111 No 169 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=97.84 E-value=1.5e-05 Score=46.97 Aligned_cols=410 Identities=8% Similarity=-0.023 Sum_probs=184.8 Q ss_pred hhhHHHHHHHHHhcCCceeccCCCcHHHH---HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 3 FIQLISQVAQALIKGGNILYPSQPTQTEI---FDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~ 79 (492) .-+++.+-.+-+.......- =+++.... +..-...+.+|..+..+|+.... ....++..| ||+-. T Consensus 1 m~~~~d~~g~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~---gd~~~~~~L--~~dm~------ 68 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQS-RSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAER---GDLTAQADL--AFDME------ 68 (512) T ss_pred CcceeCCCCCcccccccccc-ccchhcccchhhccccccCCCHHHHHHHHHHhhC---CCHHHHHHH--HHHHH------ Confidence 11111111111111100000 00000000 00000112233333333333211 122222222 12110 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCC------chhHHHHHHHHHhc--cHHHHHHHHHHHH Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT------DDEVVKRIDEVLGN--RFDDKLHSVLTGA 151 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~------d~~~~~~l~~~~~n--~~~~~~~~~~~~~ 151 (492) . ......-++.+....+.+.+.++... +....+.++.++.+ +|......+. ++ T Consensus 69 -------------~-----~D~hi~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~ll-dA 129 (512) T protein:vir:19 69 -------------E-----KDTHLFSELSKRRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAG-DA 129 (512) T ss_pred -------------h-----hChHHHHHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-hh Confidence 0 01223445666666677778777532 12344556666654 5666666654 68 Q ss_pred HhcCeE-EEEEEeCCCCceE---EEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeec Q lcl|Aclame:pro 152 SNKGIE-WLHPYLDEEGEFK---LFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPD 227 (492) Q Consensus 152 ~~~G~~-~~~v~~d~~g~~~---i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (492) .-||.+ ++++|.-.+|... +.+.+|+... |+......+. .. ........ T Consensus 130 ~~~G~s~~Ei~w~~~~g~~~~~~~~~r~~~~f~--~~~~~~~~lr----~~-~~~~~G~~-------------------- 182 (512) T protein:vir:19 130 ILKGYSMQEIEWGWLGKMRVPVALHHRDPALFC--ANPDNLNELR----LR-DASYHGLE-------------------- 182 (512) T ss_pred hhhcceeeeeEeeeeCCceeeeeeeeeccccce--eccCCCcEEE----ec-CCCCCcee-------------------- Confidence 889986 4566754444433 4445554332 2322111111 00 00000000 Q ss_pred cccccccccccceeccCCccceEe--ecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec---CCcccch Q lcl|Aclame:pro 228 YSNNLENSKTHFSTGSWGKIPFIP--FKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN---YDDQELP 302 (492) Q Consensus 228 ~~~~~~~~~~~~~~~~~g~iPvv~--~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g---~~~~~~~ 302 (492) ..+++.+-.++ ...++.|.|.+..+...----+..+.+.+.-++.|..|+++.+= .+.++.. T Consensus 183 -------------l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a~~~ek~ 249 (512) T protein:vir:19 183 -------------LQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMRVGKYPTGSTNREKA 249 (512) T ss_pred -------------ecCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEecCCCCCHHHHH Confidence 11222221111 12356788888876665555666778889999999999998873 2222222 Q ss_pred hhH---HhhhhccceecCCCCcceeeecc-cCHHHHHHHHHHHHHHHHHHhCCCCCCccc--cccchhHHHHHHHHHHHH Q lcl|Aclame:pro 303 EFK---RLLRYYGAIKVSDNGGVDTIQVE-VPVENSKKYLDELYQKIMLFGQAVDFSSDK--FGSAPSGVALEFLYTNLN 376 (492) Q Consensus 303 ~~~---~~~~~~~~~~~~~~~d~~~l~~~-~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~--~~~~~Sg~Al~~~~~~l~ 376 (492) ... .++....+..++++.++++++.. .+...++.+++...+.|...--.-.++.+. .|+...|.. ...-.. T Consensus 250 ~L~~al~~~~~~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~iLGqtlTs~~g~~Gs~a~~~v---h~ev~~ 326 (512) T protein:vir:19 250 TLMQAVMDIGRRAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAILGGTLTTEAGDKGARSLGEV---HDEVRR 326 (512) T ss_pred HHHHHHHHHhhCcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhcccccccchhhHHHH---HHHHHH Confidence 222 23445566778888999998854 345668899999888887643221222222 222222211 112233 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhccCCc--ceeeeEEeCCCCCcCHHHHHHHHHHHh-cc-CChHHHHHhCCCCCCH Q lcl|Aclame:pro 377 LKADKLARKAKVAIQ-ELLWFVFEHFDIKGE--HKDVDISFNYNKVANTELQVQTAQQSM-GI-VSHETVLENHPFVEDL 451 (492) Q Consensus 377 ~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~--~~~i~i~f~~~~p~d~~e~~~~~~k~~-g~-vs~et~l~~l~~v~D~ 451 (492) ..+..-.+.+...+. ++++-++.+-..... ..-..+.|....+.|....++.+.+++ |+ +|.+.+.+.++. ..+ T Consensus 327 di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~e~eDl~~~a~~~~~l~~G~~i~~~~i~e~~Gi-p~~ 405 (512) T protein:vir:19 327 EIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTSEAGDITALSDAIPKLAAGMRIPVSWIQEKLHI-PQP 405 (512) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCChhhHHHHHHHHHHHhcCCCCCHHHHHHHhCC-CCC Confidence 344455556666664 466666644332221 223567899999999999999888764 76 899998888874 222 Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 452 QAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 452 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +.+-.-+.... ...............+.....+.-+ T Consensus 406 ~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d 441 (512) T protein:vir:19 406 VGDEAVFTIQP-----VVPDNGSQKEAALSAEDIPQEDDID 441 (512) T ss_pred CCccccccCCC-----ccccccccccccccccCCCchhhHh Confidence 11100000000 0000000000000000000000000 No 170 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=97.77 E-value=2.1e-05 Score=46.24 Aligned_cols=424 Identities=10% Similarity=0.044 Sum_probs=175.0 Q ss_pred HHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 32 FDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 32 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~ 111 (492) +|- ....+.+.+.+.+..+-.+.+.-..+.+.+.+|..- ++-.... ......|+..+-+...++.++ T Consensus 1 ~~~--~~~~e~~~l~~r~~~Lk~~R~~~e~~w~e~~~~~lP-----~~~~~~~------~~~~~~~~~dstg~~a~~~LA 67 (517) T protein:vir:10 1 MDM--RFAGNKSKIPKLYEQLVGKRSPFLSRAENYSRFTLP-----YLMADVN------DDLSSQNAWQDDGASATNFLS 67 (517) T ss_pred Ccc--cccccHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc-----ccccCCC------CCccccccccchHHHHHHHHH Confidence 111 122232333333333332222223344444454433 1111100 111223566677778888888 Q ss_pred HhhhcC--C-----eeecCCch-------------hHHHHH--------HHHHhccHHHHHHHHHHHHHhcCeEEEEEEe Q lcl|Aclame:pro 112 SYIVGK--P-----IAFKHTDD-------------EVVKRI--------DEVLGNRFDDKLHSVLTGASNKGIEWLHPYL 163 (492) Q Consensus 112 ~~l~g~--~-----~~~~~~d~-------------~~~~~l--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~ 163 (492) +.|++- | +++...+. ++...+ ..+..++|.....++.++...+|.|.++ . T Consensus 68 a~l~~~ltpp~~~WF~l~~~~~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly--~ 145 (517) T protein:vir:10 68 NKLSQVLFPAQRSFFRIDLTPEGIKQLDNEAMTQSTAQKLLSDVEKAAMLYGESLQFRPAVVEAFKHLIVTGNVMMY--H 145 (517) T ss_pred HHHHHhhcCCCCccccccCCHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEE--E Confidence 777642 2 23333222 122222 2234468999999999999999998654 4 Q ss_pred CCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeec----------------------cceeEEEEecceEEEEEEec Q lcl|Aclame:pro 164 DEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLE----------------------NETKVEYWDKVTVNYYVYEN 221 (492) Q Consensus 164 d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 221 (492) ++ +...++.++-.+ |.+-.| ..+.+...++..... ....+++|+.. +... . T Consensus 146 ~~-~~~~~~~~pl~~-y~v~~d-~~G~v~~ivrr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~v---~~~~-~ 218 (517) T protein:vir:10 146 PD-KTSPIQAVPLHH-YCVRRD-NNGTVLDIVFLQEKALETFEPSIRMAIQASRKGKQYKDKDNVKLYTHA---KRTK-D 218 (517) T ss_pred eC-CCCcEEEEEcCe-EEEeeC-CCcCeEEEEeeeeccHHHHHHHhhhhcchhhhhhccCCcCceEEEEEE---EEeC-C Confidence 43 334566665544 444443 345554444432210 01223333211 1111 1 Q ss_pred ceeeeccccccccccc-cceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec Q lcl|Aclame:pro 222 GSLIPDYSNNLENSKT-HFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN 295 (492) Q Consensus 222 ~~~~~~~~~~~~~~~~-~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g 295 (492) +....... .+.... .....++..+|++.+. .+.+|+|-.+...+-+..++.+.-...........|.+.+.- T Consensus 219 ~~~~~~~~--~d~~~~~~~s~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~~~~~~~a~~~~~lv~~ 296 (517) T protein:vir:10 219 GKYLIRQS--ADDVPVGKESTVTEDKSPFLILTWKRSYGEDYGRGMAEDHAGAFFVIQFLSEALARGMALMADVKYLVKP 296 (517) T ss_pred CceEEEEE--eCceeeccccccccccCCeeeeeeeecCCCCcccchHHHhHHHHHHHHHHHHHHHHHHHHhccCCcccCc Confidence 11111111 111111 1122234677887653 346799999999999999998877777766666666666531 Q ss_pred CCcccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHH Q lcl|Aclame:pro 296 YDDQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYT 373 (492) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~ 373 (492) ........+.. ... +.+..+..+++..+. ...+.......++.++..|...-....+.. ..+...+|..+.. T Consensus 297 ~~~~~~~~l~~-~~~-g~~~~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~-~~~~rvTAtEV~~--- 370 (517) T protein:vir:10 297 GSYTDINQFVE-GGS-GAVLHGVEGDIHIVQLGKYADYTPIQAVLNDYRQRIGRVFMMEAMTR-RDAERVTAYEIQR--- 370 (517) T ss_pred ccccchhhccC-CCc-cccccCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhhhhc-cCCccccHHHHHH--- Confidence 11111111111 111 122233344555543 233456667777777766654322211111 1122345555544 Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHhccCCcceeeeEEeCCCCCcCHHHH---HHHHHHHh---c-c--- Q lcl|Aclame:pro 374 NLNLKADKLARKAKVAIQE--------LLWFVFEHFDIKGEHKDVDISFNYNKVANTELQ---VQTAQQSM---G-I--- 435 (492) Q Consensus 374 ~l~~k~~~~~~~~~~~l~~--------~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~---~~~~~k~~---g-~--- 435 (492) ++..+...++..+.+ ++..++..+........+++.+.-.+ +.+.. ++.+.... | + T Consensus 371 ----r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~l~~~l~~~~v~~~~~s~l--a~l~r~~~~~~i~~~~~~i~~~a~~ 444 (517) T protein:vir:10 371 ----DAMLVEQSLGGVYSLFATTFQGPLARWFMNGISSILTSKNVSPTILTGI--EALGRMAELDKLGTFNGYVSMTAQW 444 (517) T ss_pred ----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccceeeccH--HHHHHHHHHHHHHHHHHHHHHhhcC Confidence 334444455554444 22222222322221222334332222 22222 22222211 1 1 Q ss_pred -------CChHHHHH----hCCCCC----CHHHHHHHHHHHHHHHHHhhccccCC--CCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 436 -------VSHETVLE----NHPFVE----DLQAELERIEQEQTEYNKQLPNLDDG--GADSAQQQERSNNKESE 492 (492) Q Consensus 436 -------vs~et~l~----~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e 492 (492) +....++. .++ |+ -.++|+++.++++.+.....+..... .....-.+.+.+.++.+ T Consensus 445 ~~~~~~~id~d~~~~~~a~~~G-vp~~~irs~~ev~~~~~~~~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~ 517 (517) T protein:vir:10 445 PEPLQQAIKWPDFTDWVQGQIS-ANFPFFKTQDELNAEAQAQQEQEATKYAAEQAGKAIPDMVKNGQINPQGGQ 517 (517) T ss_pred ChHHHhcCCHHHHHHHHHHHhC-CChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC Confidence 11122222 222 21 12456555555443322211111000 00000011111111111 No 171 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=97.65 E-value=3.3e-05 Score=45.16 Aligned_cols=407 Identities=13% Similarity=0.073 Sum_probs=158.4 Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHH Q lcl|Aclame:pro 31 IFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQK 110 (492) Q Consensus 31 ~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~ 110 (492) .|+..+.+.+-.+ ...+..+.... +.-.......||+. + ... ...++..-..++...+|+.. T Consensus 1 ~~~~~~~i~s~~~-~~~i~~~~~~s---~~~~~~~~~~~~~p-------p-~~~------~~la~l~~~n~~v~scI~~i 62 (542) T protein:vir:41 1 MFNYHLSIRSLEK-YKAIKREEVES---QALGETRFEEYVEP-------K-VNP------LVLLSLLQVNPYHASACSIK 62 (542) T ss_pred Ccccccccccccc-chhhhhccccc---cccccccCCccccC-------C-CCH------HHHHHHHhhcHHHHHHHHHH Confidence 3332222222111 00111110000 00000000111110 0 000 00000001235567889999 Q ss_pred HHhhhcCCeeecCCchhHHHHHHHHHhc---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEcccceEEEecCC Q lcl|Aclame:pro 111 VSYIVGKPIAFKHTDDEVVKRIDEVLGN---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDK 186 (492) Q Consensus 111 ~~~l~g~~~~~~~~d~~~~~~l~~~~~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-i~~~~p~~~~~i~d~~ 186 (492) +..+.+-|+.+..++... +..++.| ....+...+..+.+.+|.||+.+.++..|++. +..++|..+.+..|.. T Consensus 63 a~~IA~l~~~~~~~~~~~---l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~ 139 (542) T protein:vir:41 63 ANDIIRTGYILEGDDEGV---VDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGS 139 (542) T ss_pred HHHHhhCceeeecccchh---hhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCC Confidence 999988898886654432 3333333 34567777888999999999999999988764 7788888776654422 Q ss_pred CCCceEEEEEeeeeccceeEEEEecceEEEEEEecce-eeeccccccccccccceeccCCccceEeecCc-----cCCCC Q lcl|Aclame:pro 187 EHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGS-LIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN-----DLEIS 260 (492) Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn-----~~~~s 260 (492) . ++.++..... .++...... ........ ....+..=-|+++++. ..|.| T Consensus 140 ~------~~~~~~~~~~-----------~~~~~y~~~~~~~~~~g~--------~~~~~~~~eIiHir~~~~~~~~~Gls 194 (542) T protein:vir:41 140 R------YRQTWDGVNI-----------THFKDYRYEGEINPETGE--------DQDSVGANELVFIHIPSPVCSYYGVP 194 (542) T ss_pred e------eEeeecCCcc-----------eeEEeecccccccccccc--------cccccCcccEEEecCCCCCCCccccc Confidence 1 1111111111 111110000 00000000 0000111113444422 25777 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCce--EEEecCCccc-----------chhhHHhhh--------h-ccceecC- Q lcl|Aclame:pro 261 DIFMYKTLIDAYNRRLSDLSNTFKDSNELT--YVLKNYDDQE-----------LPEFKRLLR--------Y-YGAIKVS- 317 (492) Q Consensus 261 ~~~~v~~liD~~~~~~s~~~~~~~~~~~~~--l~~~g~~~~~-----------~~~~~~~~~--------~-~~~~~~~- 317 (492) .+......+.....+..-..+.+...+.|- +.+.|...+. ...++..+. . ++++.++ T Consensus 195 pi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~ 274 (542) T protein:vir:41 195 RYVSAAPAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSI 274 (542) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeec Confidence 777666555444433333334444444454 4444432211 111111111 1 2233332 Q ss_pred ---CCCcceeeeccc--CHHHHHHHHHHHHHHHHHHhCCCCCCccccccch-hHHHHHHHH-HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 318 ---DNGGVDTIQVEV--PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAP-SGVALEFLY-TNLNLKADKLARKAKVAI 390 (492) Q Consensus 318 ---~~~d~~~l~~~~--~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~-Sg~Al~~~~-~~l~~k~~~~~~~~~~~l 390 (492) .+++++|..... ....+....+..++.|+..=++|..-.+...++. ++.-++... .-....+.-..+.+...+ T Consensus 275 ~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~l 354 (542) T protein:vir:41 275 PGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSIL 354 (542) T ss_pred cCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 234556544333 3344556667777888888888865443221111 111111111 111111112222222222 Q ss_pred HHHHHHHHHHhccCCcceeeeEEeC--CCCCcCHHHHHHHHHHHhccCChHHHHHhCCCCC---CHH--------HHHHH Q lcl|Aclame:pro 391 QELLWFVFEHFDIKGEHKDVDISFN--YNKVANTELQVQTAQQSMGIVSHETVLENHPFVE---DLQ--------AELER 457 (492) Q Consensus 391 ~~~~~li~~~~~~~~~~~~i~i~f~--~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~v~---D~~--------~E~~r 457 (492) .+ .+....+ ..+.+.|+ ..+..|..+.++.+. ..|+++...+.+.++.++ |+- ..+.. T Consensus 355 n~-------~L~~~~~-~~~~~~f~~~~ll~~d~~~~~~~~v-~~GilT~NE~Re~L~g~~pgdd~~l~p~~~~~~~~~~ 425 (542) T protein:vir:41 355 TD-------FFQVKFN-PKTRFKFNDETLLESDSVRNCALLV-QSGVLTPAEARERLFGLDGGPDIFMVPSKGAAKSVKR 425 (542) T ss_pred Hh-------hcccccC-CceEEEecchhhcchHHHHHHHHHH-hCCCCCHHHHHHhhCCCCCCCcccccccccccccccc Confidence 21 1111111 23445554 444445444443322 358888888877654332 210 00000 Q ss_pred HHH--H---HHHHHHhhcc----ccCCCCCC-CCcCCCCCCCCCC Q lcl|Aclame:pro 458 IEQ--E---QTEYNKQLPN----LDDGGADS-AQQQERSNNKESE 492 (492) Q Consensus 458 i~~--E---~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~e 492 (492) .++ + ..+..+.... ........ ..+..+++-+++| T Consensus 426 ~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (542) T protein:vir:41 426 QERNYEKNQIREIRKIYAKYRPRFNEIISSKLSAEEKKKKIDESL 470 (542) T ss_pred CCcCCCCCchhhhhhcccccCccccccccccccchhhcccccchh Confidence 000 0 0011111110 00000000 1111222222222 No 172 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=97.63 E-value=3.5e-05 Score=44.98 Aligned_cols=368 Identities=10% Similarity=0.023 Sum_probs=163.0 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCccccccccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPE-ISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLV 107 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~-~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 107 (492) |..++. +..+.....+.... -..+..+.-|.. . .+.+-+.++-...+| T Consensus 1 MG~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~g~~~-~----------------~~~~al~~~~V~~~v 49 (411) T protein:vir:81 1 MGWWSR--------------LTRFFRPRNETVDMTNPLLLQWLGVDP-D----------------TPRNQLSEATYFACL 49 (411) T ss_pred CchHHH--------------HHhhccCcccccccchHHHHHHhcCcc-c----------------ChhhhhccHHHHHHH Confidence 222222 22211111000000 000111221110 0 001111122234456 Q ss_pred HHHHHhhhcCCeeec--CCc---hh-HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEc Q lcl|Aclame:pro 108 DQKVSYIVGKPIAFK--HTD---DE-VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVP 175 (492) Q Consensus 108 d~~~~~l~g~~~~~~--~~d---~~-~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~ 175 (492) +..++-+.+-|+.+- .++ +. ....+..+.. | ....+...+....+.+|.||+++.++. |++ .+..++ T Consensus 50 ~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~-g~~~~l~~l~ 128 (411) T protein:vir:81 50 KILSESLGKLPLKMYQKTERGIVKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYSG-PQLQALWILP 128 (411) T ss_pred HHHHHhHhhCceeEEEecCCceeeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecC-CceEEEEEEC Confidence 666666666676652 111 00 1112222322 2 234667778889999999999988874 554 577889 Q ss_pred ccceEEEecCCCCCceEEEEE-eeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec- Q lcl|Aclame:pro 176 AEQGIPIWTDKEHEELEAFIR-MYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK- 253 (492) Q Consensus 176 p~~~~~i~d~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~- 253 (492) |..+.++.++.........+. .|..........+... -|++++ T Consensus 129 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------------------------------eiih~k~ 173 (411) T protein:vir:81 129 SQYVTIVVDDRGLLGEKNAIWYRYNDPYDGKMYVFRND-----------------------------------EILHFKT 173 (411) T ss_pred CceEEEEEcCcccccccceEEEEEEecCCceEEEEccc-----------------------------------cEEEEcC Confidence 999888876532111000000 0000000000000000 123332 Q ss_pred ----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC---cccchhhHHhhh--------hccceecCC Q lcl|Aclame:pro 254 ----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD---DQELPEFKRLLR--------YYGAIKVSD 318 (492) Q Consensus 254 ----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~~--------~~~~~~~~~ 318 (492) +...|.|.+......++....+..-..+.+...+.|-.++.... .+....++..+. .++++.+++ T Consensus 174 ~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~ 253 (411) T protein:vir:81 174 SVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDLNQEARDRLVKGFEQFANGSKNAGKIIPVPL 253 (411) T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHHHHHHHhcCccccCCceecCC Confidence 12357777777777776666665555666666666776665432 222222222221 123455555 Q ss_pred CCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 319 NGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAP-SGVALEFLYTNLNLKADKLARKAKVAIQELLWF 396 (492) Q Consensus 319 ~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~-Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~l 396 (492) +.+.+.+........+.+..+..+..|+..-++|..-.+... ++- +.+.. ....+..+|.-.+.. T Consensus 254 g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~-------------~~~f~~~~l~P~~~~ 320 (411) T protein:vir:81 254 GMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEAQ-------------NLAFYVDTLLYVLKQ 320 (411) T ss_pred CceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHHH-------------HHHHHHHHHHHHHHH Confidence 555555543333444556667778888888888865443221 111 11111 111223333333333 Q ss_pred HHHHhcc-----C--CcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCC--HHHHHHHHHHHHHHH Q lcl|Aclame:pro 397 VFEHFDI-----K--GEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVED--LQAELERIEQEQTEY 465 (492) Q Consensus 397 i~~~~~~-----~--~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~ 465 (492) +...+.. . .....+++.+..-+-.|..+.++++.++ .|+++.-.+.++++.-.. -+.-+-. T Consensus 321 ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~~~~-------- 392 (411) T protein:vir:81 321 YEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYGNNLMAN-------- 392 (411) T ss_pred HHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeec-------- Confidence 3322221 1 1123355555666778999999998887 478998888887764211 0100000 Q ss_pred HHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 466 NKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) ....+.. ..+++..+.|+. T Consensus 393 -~n~~pl~----~~~~~~~kgGd~ 411 (411) T protein:vir:81 393 -GNYIPLS----MLGANYGKGGDS 411 (411) T ss_pred -cCccchh----hhhhhhccCCCC Confidence 0000000 000111111111 No 173 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=97.56 E-value=4.5e-05 Score=44.40 Aligned_cols=386 Identities=10% Similarity=0.029 Sum_probs=159.2 Q ss_pred HHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCcccccccc--ccc---cccccccccccccccc Q lcl|Aclame:pro 28 QTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISI-GQEYYEQRPDIVKEPKP--VDA---TGAVDPLKPDDRMITN 101 (492) Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-~~~YY~G~~~i~~~~~~--~~~---~~~~~~~~~~~ri~~n 101 (492) |+ +...+.| .+... ...|. |..--...... ... ...-....++.-+.+. T Consensus 1 ~~-------------~~~~~~~-----------~~~~~~~~~~~-g~~~s~~~~~~~~~~~~~~~~~g~~v~~~~al~~~ 55 (437) T protein:vir:10 1 MK-------------QGKQRAL-----------GRIKSSFLKWL-GVPISLTDGSFWSAWGGMGSSSGETVTADSALQLS 55 (437) T ss_pred CC-------------cchhhhh-----------hhhHHhhhhhc-CCcccCCchhHHHhhcccccCCCceechHhhhccH Confidence 00 0011111 11111 11211 21100000000 000 0000000000001122 Q ss_pred hHHHHHHHHHHhhhcCCeeecC--Cc---h--hHHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce Q lcl|Aclame:pro 102 FHANLVDQKVSYIVGKPIAFKH--TD---D--EVVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF 169 (492) Q Consensus 102 ~~~~ivd~~~~~l~g~~~~~~~--~d---~--~~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~ 169 (492) -...+|+.+++-+..-|+.+-. .+ . ....+...+.. | ....+...+...++.+|.+|+++-++. |.+ T Consensus 56 ~v~~ci~~Ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-g~~ 134 (437) T protein:vir:10 56 AVWSCVRLIAETIATLPLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSA-GVL 134 (437) T ss_pred HHHHHHHHHHHHHhhCceeEEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcE Confidence 2334566666666666665411 11 0 11112233322 2 334566777889999999999998884 765 Q ss_pred -EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccc Q lcl|Aclame:pro 170 -KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIP 248 (492) Q Consensus 170 -~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iP 248 (492) .+..++|..+.+..+.+ +.+.+ .+....+. ...+.... T Consensus 135 ~~L~~l~p~~v~i~~~~~--g~~~y---~~~~~~g~-~~~~~~~d----------------------------------- 173 (437) T protein:vir:10 135 IGLELMLPQRTTVKRLTS--GALQY---TYRNVDGT-VSTLAEDD----------------------------------- 173 (437) T ss_pred EEEEEEcCcceEEEECCC--CeEEE---EEEecCce-EEEEcccc----------------------------------- Confidence 46788888887765432 22111 01111111 11111111 Q ss_pred eEeec----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccc Q lcl|Aclame:pro 249 FIPFK----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGA 313 (492) Q Consensus 249 vv~~~----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~ 313 (492) |++++ +...|.|.++.....++....+..-..+.+...+.|-.++... +.+....++..+. .+++ T Consensus 174 Iih~r~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~nag~~ 253 (437) T protein:vir:10 174 VFHVRGFSLDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQKEKRAEIRTDLAEQFGGAMQAGKT 253 (437) T ss_pred EEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHHHHHHHHHhcCccccCcc Confidence 12221 1235777777766666655555555556666666666665532 2222233332221 1345 Q ss_pred eecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 IKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQE 392 (492) Q Consensus 314 ~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~ 392 (492) +.++++-+.+.++.......+.+..+..+..|+..=++|..-.+... ++..+..++..... .+..+|.- T Consensus 254 ~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~----------f~~~tl~P 323 (437) T protein:vir:10 254 MVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQTLG----------FLTFTLRP 323 (437) T ss_pred eeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHH----------HHHHHHHH Confidence 55665555554443333444556666677788887788765443221 11111122211111 11122222 Q ss_pred HHHHHHHHhc----cCC--cceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHH------HHH Q lcl|Aclame:pro 393 LLWFVFEHFD----IKG--EHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQA------ELE 456 (492) Q Consensus 393 ~~~li~~~~~----~~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~------E~~ 456 (492) .+..+...+. ... ....+++.+...+..|..+.++++.++. |+++.-.+++.++. ++.-.. -+. T Consensus 324 ~~~~ie~~l~~kll~~~e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~~~~~~~~~~~ 403 (437) T protein:vir:10 324 WLTRIEQAARRSLLRPGERDQFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAAVLTVQSALL 403 (437) T ss_pred HHHHHHHHHHhhccCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcceEeecCccc Confidence 2222211111 111 1123555556667788999999988774 78999888877643 221111 011 Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 457 RIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKES 491 (492) Q Consensus 457 ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (492) .++.--+............+.+.++++..+++ |. T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~ 437 (437) T protein:vir:10 404 PIDKLGEHTTATAAQDALKAWLYQEEKTRATQ-ER 437 (437) T ss_pred chhhccCcCCCcchhccccccCCCCCCCCccc-cC Confidence 11110000000000000111112222222222 22 No 174 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=97.54 E-value=4.8e-05 Score=44.26 Aligned_cols=360 Identities=6% Similarity=-0.030 Sum_probs=149.7 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..|+........... ...+.-........|.-. ...+. +..-+.+.-...+|+ T Consensus 1 Mg~~~~~~~~k~~~~~-------------~~~~~~~~~~~~~~~~~~----~~~v~---------~~~~l~~~~v~~~i~ 54 (383) T protein:vir:10 1 MGLLTPKNFSKRNAKN-------------MVYPSNPAFFTTTVGGMQ----LSYVS---------ALSALQNTNVYSVIN 54 (383) T ss_pred CCcccccccccccccc-------------cccccchhhhhhhccCcc----ccccc---------hhHhhcchHHHHHHH Confidence 1222111000000000 000000000111111000 00000 000011122334566 Q ss_pred HHHHhhhcCCeeecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCC Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKE 187 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~ 187 (492) ..++-+..-|+++. +.....++..=+. .....+...+..+.+.+|.||+++..+. ..+...+|.++.+..+.. T Consensus 55 ~ia~~ia~~~~~~~--~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~~---~~~~p~~~~~v~~~~~~~- 128 (383) T protein:vir:10 55 RIASDVSSAHFKTE--NTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM- 128 (383) T ss_pred HHHHhhccCceeec--ccchhhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc---eeEeecCcceEEEEEcCC- Confidence 66665555666553 2222233321111 1345667778888999999999886542 223333333333222211 Q ss_pred CCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-------ccCCCC Q lcl|Aclame:pro 188 HEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-------NDLEIS 260 (492) Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-------n~~~~s 260 (492) ... ..+..........+... -|++|++ ...|.| T Consensus 129 --~~~---~~~~~~~~~~~~~~~~~-----------------------------------evih~r~~~~~~~~~~~G~s 168 (383) T protein:vir:10 129 --GIV---YTVLESNDRPKMVLRQD-----------------------------------QMLHFRLMPDPQYRYLIGRS 168 (383) T ss_pred --ceE---EEEEEcCCceEEEEccc-----------------------------------ceEEeccCCCCccccccccc Confidence 000 00010100000000000 1333321 124788 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe--cCC--cccchhhHHhhh-------hccceecCCCCcceeeeccc Q lcl|Aclame:pro 261 DIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK--NYD--DQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEV 329 (492) Q Consensus 261 ~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~--g~~--~~~~~~~~~~~~-------~~~~~~~~~~~d~~~l~~~~ 329 (492) .++.....++....+..-....+.....|-.++. |.. .+....+...+. .++++.++++.+++.+.... T Consensus 169 ~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~ 248 (383) T protein:vir:10 169 PLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKT 248 (383) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCCh Confidence 8888777777777766666666676666655544 321 122222222221 22345555555555554333 Q ss_pred CHHH-HHHHHHHHHHHHHHHhCCCCCCcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Q lcl|Aclame:pro 330 PVEN-SKKYLDELYQKIMLFGQAVDFSSDKF-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEH 407 (492) Q Consensus 330 ~~~~-~~~~i~~l~~~i~~~a~~p~~~~~~~-~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~ 407 (492) .... +.+..+..++.|+..-++|..-.+.. +++.++..++.. ...|..+|.-+++.+...+..+--. T Consensus 249 ~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~-----------~~~~~~~l~P~~~~ie~~l~~~l~~ 317 (383) T protein:vir:10 249 DVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQI-----------KATYLANLNSYVNPIVDELRLKMNA 317 (383) T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhCC Confidence 3333 24566667788888888886443211 111111111110 0111122222232222222211111 Q ss_pred eeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCC Q lcl|Aclame:pro 408 KDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQER 485 (492) Q Consensus 408 ~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 485 (492) ..+++.+...+..|..+.++++.++ .|+++...+.++++.-.-+ +.+.........+.+ T Consensus 318 ~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~-------------------~~d~~~~~~~~~~~~ 378 (383) T protein:vir:10 318 PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFL-------------------PDNLPEFKPLTNETK 378 (383) T ss_pred ceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccc-------------------CCcccccCCCcccCC Confidence 3466777788888999999999887 4789998888876532100 000000011111223 Q ss_pred CCCCC Q lcl|Aclame:pro 486 SNNKE 490 (492) Q Consensus 486 ~~~~~ 490 (492) .+++| T Consensus 379 gGd~e 383 (383) T protein:vir:10 379 GGDDK 383 (383) T ss_pred CCCCC Confidence 33333 No 175 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=97.53 E-value=5e-05 Score=44.15 Aligned_cols=417 Identities=9% Similarity=-0.015 Sum_probs=173.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcC--C---- Q lcl|Aclame:pro 45 LEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGK--P---- 118 (492) Q Consensus 45 ~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~--~---- 118 (492) .++.+.+.+.+.+ |.+....++++++=-- +.+-... +. .......|+..+-+...++.+++.|++- | T Consensus 1 mk~~~~~~~~~lk-R~~~e~~w~e~a~~tl--P~~~~~~-~~---~~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~~ 73 (510) T protein:vir:63 1 MKTTAAMLWEKLR-DGSVEQRAIEFAKTTL--PYLMVDP-MS---GSRGVVEHDFQSAGALLVNNLAAKLARSLFPTGIP 73 (510) T ss_pred ChhHHHHHHHHHh-ccchHHHHHHHHHhhc--cccCCCC-CC---ccccccCCCccchHHHHHHHHHHHHHhhhcCCCCc Confidence 4455555555443 3344445555443211 1111000 00 0111223455667777788887777542 2 Q ss_pred -eeecCCch-------------hHHHHH--------HHHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcc Q lcl|Aclame:pro 119 -IAFKHTDD-------------EVVKRI--------DEVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPA 176 (492) Q Consensus 119 -~~~~~~d~-------------~~~~~l--------~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p 176 (492) +++...+. ++.+.+ ..+..++|.....++.++...+|.+.++ .++++. +++.++- T Consensus 74 WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Li~~G~a~l~--~~~~~~-~~~~~pl 150 (510) T protein:vir:63 74 FFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLY--RDSDAA-TVVAWSL 150 (510) T ss_pred ccccCCChHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEE--EcCCCc-EEEEEEc Confidence 22332221 133322 2334468899999999999999997554 456553 5666655 Q ss_pred cceEEEecCCCCCceEEEEEeeeec--------------------cceeEEEEecceEEEEEEecc--e-eeeccccccc Q lcl|Aclame:pro 177 EQGIPIWTDKEHEELEAFIRMYKLE--------------------NETKVEYWDKVTVNYYVYENG--S-LIPDYSNNLE 233 (492) Q Consensus 177 ~~~~~i~d~~~~~~~~~~i~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 233 (492) .+ |.+-.| ..+.+...++.+... ....+++|+.. +..... . .......... T Consensus 151 ~~-y~v~~d-~~G~vd~i~rr~~~t~~~l~e~~~~~~~~~~~~~~~~~~v~v~~~V----~~~~~~~~~~~sv~~e~dg~ 224 (510) T protein:vir:63 151 RS-YAVRRD-ATGRWMDIVLKQRYKSKDLDEEYKQDLMRAGRNLSGSGSVDLYTHV----QRKKGTAMEYAELYHEIDGV 224 (510) T ss_pred ce-eEEeeC-CCcCeeEEEeeeeccHHHHhHHhhhhhhccccccCCCcceEEEEEE----EeecCCCceEEEEEEEecCc Confidence 44 444443 345555555543321 01112222211 001110 0 0001111111 Q ss_pred cccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhh Q lcl|Aclame:pro 234 NSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLL 308 (492) Q Consensus 234 ~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 308 (492) ........++..+|++.+. .+.+|+|-.+...+-+..++.+.-...........|.+.+.-.......... .. T Consensus 225 -~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~~~lv~p~g~~~~~~~~-~~ 302 (510) T protein:vir:63 225 -RVGKEGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEVLNLVDEAKGAVVDDYQ-DA 302 (510) T ss_pred -eeccccccccccCceeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccCcccccchhhhc-cC Confidence 1111223345567877653 3457999999999999999988777777666666666554211111111111 11 Q ss_pred hhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHH----H- Q lcl|Aclame:pro 309 RYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKAD----K- 381 (492) Q Consensus 309 ~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~----~- 381 (492) .. +.+..+..++++.+. +..+.......++.++..|...=. -+... ..+...++..+......+..... + T Consensus 303 ~~-g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~-~~l~~-~~~~rvTAtEV~~r~~E~~~~LGpv~~rl 379 (510) T protein:vir:63 303 EM-GDYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFM-YGANQ-RDAERVTAEEVRITAEEAENTLGGTYSLL 379 (510) T ss_pred CC-ceeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHH-hhccc-CCCCCcCHHHHHHHHHHHHHHhhHHHHHH Confidence 11 222233334566543 334566667777777766654321 11111 12234566665554333322221 1 Q ss_pred HHHHHHHHHHHHHHHHHHHhcc---CCcce-eeeEEeCCCCCcCHHHHHHHH-------HHHhc---c---CChHHHH-- Q lcl|Aclame:pro 382 LARKAKVAIQELLWFVFEHFDI---KGEHK-DVDISFNYNKVANTELQVQTA-------QQSMG---I---VSHETVL-- 442 (492) Q Consensus 382 ~~~~~~~~l~~~~~li~~~~~~---~~~~~-~i~i~f~~~~p~d~~e~~~~~-------~k~~g---~---vs~et~l-- 442 (492) ....+..-+.+++.++.+. +. ..+.. ...+++-..+-+ ++.++.+ ..+.+ + |....++ T Consensus 380 ~~E~l~Pli~r~~~il~r~-gl~p~p~~~~~~~~v~~is~Lar--aq~~~~l~~~~q~l~~~~~~aq~~~~id~d~~~~~ 456 (510) T protein:vir:63 380 AENLQSPLAYVCLSEVDDA-LLQGLITKQHKPAIETGLPALSR--SAAVQSMLNASQVIAGLAPIAQLDPRISLPKMMDT 456 (510) T ss_pred HHHHHHHHHHHHHHHHHhc-cCCCCCchhcccceecchhHHHH--HHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHH Confidence 1222233333333333221 21 11111 111222222221 1121111 11111 1 1122222 Q ss_pred --HhCCCCC-----CHHHHHHHHHHHHHH----HHHhhccccCCCCCCCCcCCCC Q lcl|Aclame:pro 443 --ENHPFVE-----DLQAELERIEQEQTE----YNKQLPNLDDGGADSAQQQERS 486 (492) Q Consensus 443 --~~l~~v~-----D~~~E~~ri~~E~~~----~~~~~~~~~~~~~~~~~~~~~~ 486 (492) ..++ |+ -.++|++.+.+++.. ..+.......+.+..+.....- T Consensus 457 ~a~~~G-v~p~~ivrs~eev~a~~~~~~qq~~~~~~~~~~~~~~a~~~~~~~~g~ 510 (510) T protein:vir:63 457 IWAAFS-VDTSQFYKSADELQAEAEQQRQQAAQAQAAQETLLEGASDMTNALAGV 510 (510) T ss_pred HHHHhC-CChhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC Confidence 2333 21 124555554443221 1111111111111111111111 No 176 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=97.51 E-value=5.3e-05 Score=44.01 Aligned_cols=384 Identities=10% Similarity=0.068 Sum_probs=158.2 Q ss_pred hhH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCee Q lcl|Aclame:pro 43 ETL--EEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIA 120 (492) Q Consensus 43 ~~~--~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~ 120 (492) +.+ .|.+.. ....+..+.+ ...|.+....- .+... . .......-..++....+|+.++.-+-+-|+. T Consensus 1 ~~~~~~~~~~~--p~~~e~~~~~---~~~~~~~~~~~-~~~~~--~---~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~ 69 (518) T protein:vir:10 1 MLLANGQTLSA--PAMAELSPQM---QDSYYYAPAVG-MQLER--Q---FSLYGGIYKNQPWVRTVIAKRAQALARLPVK 69 (518) T ss_pred CcccCceeecC--chhhhhhhhh---hcccccccccc-eeccc--c---cchhhHHHhhhHHHHHHHHHHHHhhccCceE Confidence 000 000000 0000111111 11111110000 00000 0 0000000011233455667766666666655 Q ss_pred e---cCCc--hhHHHHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCC Q lcl|Aclame:pro 121 F---KHTD--DEVVKRIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHE 189 (492) Q Consensus 121 ~---~~~d--~~~~~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~ 189 (492) + +.+. ......+..++. |. ...+...+..+.+.+|.+|+.+-++.+|++ .+..++|..+.+..+... . T Consensus 70 l~~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~-~ 148 (518) T protein:vir:10 70 CMFTSGDTETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRT-G 148 (518) T ss_pred EEEEcCCCceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCC-C Confidence 4 1111 111122223332 32 235666778889999999999999999986 578889988887766422 1 Q ss_pred ceEEEEEeeeeccce--eEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC----c-cCCCCcH Q lcl|Aclame:pro 190 ELEAFIRMYKLENET--KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----N-DLEISDI 262 (492) Q Consensus 190 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n-~~~~s~~ 262 (492) .+.+ + +...... ....+.... |+++++ . ..|.|.+ T Consensus 149 ~~~y--~-~~~~~~~~~~~~~~~~~e-----------------------------------ViHir~~s~dg~~~G~spi 190 (518) T protein:vir:10 149 RYEY--Y-FQAGAGVGTQLVSFADDE-----------------------------------VVPIRFFNPDGLERGLSLM 190 (518) T ss_pred EEEE--E-EEecCCccceEEEecCCc-----------------------------------EEEecCCCCCcccccccHH Confidence 2211 1 1111110 000011111 222221 1 2467777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecCCCCcceeeecccCH Q lcl|Aclame:pro 263 FMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPV 331 (492) Q Consensus 263 ~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~~~ 331 (492) ......+.....+..-..+.+...+.|-.++... +.+....++..+. .++++.++++.+.+.++..... T Consensus 191 ~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D 270 (518) T protein:vir:10 191 ESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSEAAQQRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVE 270 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHHHHhcCccccCcceEcCCCceEEEccCChhH Confidence 7666666555555545555566666665555432 2222223333221 2345556666555555543344 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCccee Q lcl|Aclame:pro 332 ENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNL-KADKLARKAKVAIQELLWFVFEHFDIKGEHKD 409 (492) Q Consensus 332 ~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~-k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~ 409 (492) ..+.+..+..+..|+..=++|..-.+... ++-|. ++.....+.. .+.-....+...+.+ .++... ..... T Consensus 271 ~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn--~eq~~~~f~~~tL~P~l~~ie~~ln~---~L~~~~---~~~~~ 342 (518) T protein:vir:10 271 MQFIEARQLNREEVCGVYDIAPPIVHILDRATFSN--ISAQMRAFYRDTMAIPIARIQSAMDK---YVGQYW---VRKNR 342 (518) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccc---cCCce Confidence 44556666677778777778765443211 11121 1111111111 111111111111111 111111 11233 Q ss_pred eeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHH-H------HHHHHHHHHHHHHhhccccCCCCC Q lcl|Aclame:pro 410 VDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQA-E------LERIEQEQTEYNKQLPNLDDGGAD 478 (492) Q Consensus 410 i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~-E------~~ri~~E~~~~~~~~~~~~~~~~~ 478 (492) +++....-+..|..+.++++.++ .|+++.-.++++++. ++++.. + +..+..- ......++. T Consensus 343 ~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~~gD~~~~~~n~~pl~~~--------~~~~~~g~~ 414 (518) T protein:vir:10 343 MKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADELYANSALQPLGAT--------PDGAVEGEE 414 (518) T ss_pred EEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccceecccc--------cccccCCCC Confidence 45555666778999999998877 478998888887753 222110 0 1111100 000000000 Q ss_pred CCCcCCCCC-----CCC--CC Q lcl|Aclame:pro 479 SAQQQERSN-----NKE--SE 492 (492) Q Consensus 479 ~~~~~~~~~-----~~~--~e 492 (492) ....+...+ .++ ++ T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~ 435 (518) T protein:vir:10 415 APAPKRPASTPVASLDQSPPT 435 (518) T ss_pred CCCCCCCCccccccccccccc Confidence 000000000 000 00 No 177 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=97.49 E-value=5.6e-05 Score=43.88 Aligned_cols=383 Identities=11% Similarity=0.015 Sum_probs=181.6 Q ss_pred Chhhh-------HHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 1 MQFIQ-------LISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQR 73 (492) Q Consensus 1 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~ 73 (492) -++|+ +.++||-+ .++.+.+- .+..+..+..+|+..- ....-| .+.. T Consensus 10 g~p~~~~~~~~~~~~~ia~~-~~~~~~~~---------------~~~~~~~~~~iLr~~~----~~~~~y---~~m~--- 63 (491) T protein:vir:10 10 TEFVTFGEPDKSLSSQIATR-ARSIDFFA---------------LGMYLPNPDPVLKALG----KDIRVY---RELR--- 63 (491) T ss_pred CCccCcccCChHHHHHHHhh-hccccccc---------------ccCCccchHHHHHhcC----CCHHHH---HHHh--- Confidence 22332 55555532 22332221 1111222222222110 000111 1110 Q ss_pred CccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCC--chhHHHHHHHHHhc-cHHHHHHHHHHH Q lcl|Aclame:pro 74 PDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT--DDEVVKRIDEVLGN-RFDDKLHSVLTG 150 (492) Q Consensus 74 ~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~--d~~~~~~l~~~~~n-~~~~~~~~~~~~ 150 (492) ......-.+++...-+.+.+..+.+. ++...+.+.++++. +|.....++. + T Consensus 64 -------------------------~D~~i~s~l~~Rk~av~~~~w~i~~~~~~~~~~e~v~e~l~~~~~~~~l~~~l-d 117 (491) T protein:vir:10 64 -------------------------ADAHVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIVTEML-D 117 (491) T ss_pred -------------------------hChHHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHH-H Confidence 01223445566666667778777643 34455666666644 6777776665 6 Q ss_pred HHhcCeE-EEEEEeCCCCceE---EEEEcccceEEEecCCCCCceEEEEEeeeecc-ceeEEEEecceEEEEEEecceee Q lcl|Aclame:pro 151 ASNKGIE-WLHPYLDEEGEFK---LFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN-ETKVEYWDKVTVNYYVYENGSLI 225 (492) Q Consensus 151 ~~~~G~~-~~~v~~d~~g~~~---i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 225 (492) +.-||.+ ++++|.-.+|... +..++|+.+. |+.. +.+. +...+. .....+ T Consensus 118 a~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~--~d~~--~~l~----~~~~~~~~~g~~l----------------- 172 (491) T protein:vir:10 118 AVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFV--YDPE--NQLR----FRSKDHWMQGEEL----------------- 172 (491) T ss_pred hhhhcceeEEEEEeecCCeeEEEEeeeeccccee--eccC--CceE----EecCCCCCCccee----------------- Confidence 8889986 5666765556543 4444444332 3321 1111 000000 000111 Q ss_pred eccccccccccccceeccCCccceEee--cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---Cccc Q lcl|Aclame:pro 226 PDYSNNLENSKTHFSTGSWGKIPFIPF--KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQE 300 (492) Q Consensus 226 ~~~~~~~~~~~~~~~~~~~g~iPvv~~--~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~ 300 (492) .+++.+-.++- ..++.|.|.+..+....---+..+.+.+.-++.|..|+++.+-. +.++ T Consensus 173 ----------------~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a~~~e 236 (491) T protein:vir:10 173 ----------------PARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSASDGE 236 (491) T ss_pred ----------------cCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCHHH Confidence 11221111111 13567889888877766666777888999999999999998742 3332 Q ss_pred chhhHH---hhhhccceecCCCCcceeeeccc---CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHH Q lcl|Aclame:pro 301 LPEFKR---LLRYYGAIKVSDNGGVDTIQVEV---PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTN 374 (492) Q Consensus 301 ~~~~~~---~~~~~~~~~~~~~~d~~~l~~~~---~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~ 374 (492) ...... ++....+..++.+.++++++... +...++.+++...+.|...--.=.++.+..|+...|..-.- - T Consensus 237 k~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~~~gs~a~~~vh~~---v 313 (491) T protein:vir:10 237 KNLLLDCLEDMVQDAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALLGQNQTTEATSTRASAQAGLE---V 313 (491) T ss_pred HHHHHHHHHHHhcCcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCcccchhHHHHHHH---H Confidence 222222 33445567788999999987542 34568888888888776543211122223333332322111 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHh--cc-CChHHHHHhCCCCCCH Q lcl|Aclame:pro 375 LNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GI-VSHETVLENHPFVEDL 451 (492) Q Consensus 375 l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~-vs~et~l~~l~~v~D~ 451 (492) ....+..-.+.+...+.++++-++.+-....+ ...+.|... +......++.+.+++ |+ ++.+.+.+.++. +.+ T Consensus 314 ~~di~~~D~~~i~~tln~li~~l~~~N~~~~~--~p~f~~~~~-~e~~~~~a~~~~~L~~~G~~i~~~~i~e~~Gi-p~~ 389 (491) T protein:vir:10 314 TDDIRDGDKAVVSEAMNMLIRWICDLNFDGAD--RPVFDMWEQ-EQVDEIQAGRDQKLTQAGARFTPAYFKRAYNL-QDG 389 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cceEEecCc-CchhHHHHHHHHHHHhCCCcCCHHHHHHHhCC-CCC Confidence 22333344556667777777666655433222 234555433 233356788888875 66 888888888863 322 Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 452 QAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 452 ~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +.+.. ......+...+.... .+....+....+ T Consensus 390 ~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~d 421 (491) T protein:vir:10 390 DLDER--------PLPVSAVDTVGAASF-AEFEAPDQDALD 421 (491) T ss_pred CcCcc--------ccccCCCCCcccccc-cccCCCCCCchH Confidence 11100 000000000000000 011111111111 No 178 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=97.47 E-value=6.1e-05 Score=43.69 Aligned_cols=395 Identities=11% Similarity=0.030 Sum_probs=175.1 Q ss_pred HHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccccc-cc Q lcl|Aclame:pro 10 VAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEY-YEQRPDIVKEPKPVDA-TG 87 (492) Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~Y-Y~G~~~i~~~~~~~~~-~~ 87 (492) .+..+..---.+.+++. ..+-+...+. .....+ ..+ +.|-. ..+..... .+ T Consensus 1 ~~~~i~~~~g~~~~~~~------------------~~~~~~~~ia---~~~~~~---~~~~~~~~~---p~~~~il~~~~ 53 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGE------------------PDKSLSSQIA---TRARSI---DFFALGMYL---PNPDPVLKALG 53 (491) T ss_pred CCCeeeCCCCCcccccc------------------cchhHHHHHh---hhcccc---ccccccccC---cchhHHHhhcc Confidence 00000000000111100 0000101110 000000 010 11110 00000000 00 Q ss_pred c-ccccccccccccchHHHHHHHHHHhhhcCCeeecCC--chhHHHHHHHHHhc-cHHHHHHHHHHHHHhcCeEE-EEEE Q lcl|Aclame:pro 88 A-VDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT--DDEVVKRIDEVLGN-RFDDKLHSVLTGASNKGIEW-LHPY 162 (492) Q Consensus 88 ~-~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~--d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~~-~~v~ 162 (492) . ..... +.. ......-.+.+...-+.+.+..+.+. ++...+.+.++++. +|.....++ .++.-||.+. +++| T Consensus 54 ~~~~~y~-~m~-~D~~i~s~l~~Rk~av~~~~w~i~~~~~~~~~a~~i~e~l~~~~~~~~i~~~-lda~~~G~s~~Ei~w 130 (491) T protein:vir:79 54 KDIRVYR-ELR-ADAHVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIATEM-LDAVLYGYQPMEITW 130 (491) T ss_pred CCHHHHH-HHh-hChHHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHH-HHhhhhcceeEEEEE Confidence 0 00000 000 23445666777777788889888653 33445666666644 566666655 4678899864 5667 Q ss_pred eCCCCce---EEEEEcccceEEEecCCCCCceEEEEEeeeecc-ceeEEEEecceEEEEEEecceeeecccccccccccc Q lcl|Aclame:pro 163 LDEEGEF---KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN-ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTH 238 (492) Q Consensus 163 ~d~~g~~---~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (492) .-.+|.. ++..++|+.+. |+.. +.+. +..... ..... T Consensus 131 ~~~~g~~~~~~l~~r~~~~f~--~d~~--~~l~----l~~~~~~~~g~~------------------------------- 171 (491) T protein:vir:79 131 GKVGNYIVPIDVVGKPADWFV--YDPE--NQLR----FRSKEHWVQGEE------------------------------- 171 (491) T ss_pred eecCCeeeEEeeeeeccccee--eccC--CceE----EeecCCCCCcee------------------------------- Confidence 6555654 34455554332 3321 1111 100000 00000 Q ss_pred ceeccCCccceEee--cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec---CCcccchhhHH---hhhh Q lcl|Aclame:pro 239 FSTGSWGKIPFIPF--KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN---YDDQELPEFKR---LLRY 310 (492) Q Consensus 239 ~~~~~~g~iPvv~~--~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~---~~~~ 310 (492) ..+++.+-..+. ..++.|.|.+..+....--=+..+.+.+.-++.|..|+++.+= .+.++...... .+.. T Consensus 172 --lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~~~a~~~ek~~l~~al~~~~~ 249 (491) T protein:vir:79 172 --LPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSASDAETNLLLDRLEDMVQ 249 (491) T ss_pred --ecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHHHHhc Confidence 112222211211 1356788888876665555566678888889999999998873 23332222222 3444 Q ss_pred ccceecCCCCcceeeecc---cCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 311 YGAIKVSDNGGVDTIQVE---VPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAK 387 (492) Q Consensus 311 ~~~~~~~~~~d~~~l~~~---~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~ 387 (492) ..+..++.+.++++++.. .+...++.+++...+.|...--.=.++.++.|+...|.. . ..-....+..-.+.+. T Consensus 250 ~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~~~gs~a~~~v-h--~~v~~~i~~~D~~~i~ 326 (491) T protein:vir:79 250 DAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIALLGQNQTTEATSTRASAQA-G--LEVTDDIRDGDKAIVV 326 (491) T ss_pred CeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHHhhhhhccCcccchhhHHH-H--HHHHHHHHHHHHHHHH Confidence 556678899999998754 234568888888887776543211122223333333322 1 1123334445556666 Q ss_pred HHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCH-HHHHHHHHHHh--cc-CChHHHHHhCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 388 VAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANT-ELQVQTAQQSM--GI-VSHETVLENHPFVEDLQAELERIEQEQT 463 (492) Q Consensus 388 ~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~-~e~~~~~~k~~--g~-vs~et~l~~l~~v~D~~~E~~ri~~E~~ 463 (492) ..+.++++-++.+-+... ....+.| ..+.+. ...++.+.+++ |+ +|.+.+.+.++. +.++.+.+- T Consensus 327 ~tln~li~~l~~~N~~~~--~~p~f~~--~e~ee~~~~~a~~~~~L~~~G~~i~~~~~~e~~Gi-p~~~~~e~~------ 395 (491) T protein:vir:79 327 EAMNMLIRWICDLNFDGA--ARPVFDM--WEQEQVDEIQAGRDEKLTRAGARFTPAYFKRAYNL-QDGDLDERP------ 395 (491) T ss_pred HHHHHHHHHHHHhcCCCC--CcceEee--cCcCchhHHHHHHHHHHHhCCCccCHHHHHHHhCC-CCCCCCccc------ Confidence 777777776665544322 2233444 334443 44677777764 66 888888888864 222111000 Q ss_pred HHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 464 EYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .....+......... +....+...-+ T Consensus 396 --~~~~~~~~~~~~~~~-~~~~~~~~~~d 421 (491) T protein:vir:79 396 --LPVSAVDAVGAASFA-EFEAPDQDALD 421 (491) T ss_pred --cCcCccccccccccc-ccCCCCCcchH Confidence 000000000000000 00011111111 No 179 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=97.44 E-value=6.7e-05 Score=43.46 Aligned_cols=382 Identities=10% Similarity=0.059 Sum_probs=158.6 Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCee Q lcl|Aclame:pro 43 ET--LEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIA 120 (492) Q Consensus 43 ~~--~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~ 120 (492) ++ ..+.+..- ...+..++ ..+-|-|....- .+... .. ......-..++....+|+.++.-+-+-|+. T Consensus 1 ~~~~~~~~~~~p--~~~~~~~~---~~~~~~~~~~~g-~~~~~--~~---~~~~~~~~~~~~V~acV~~IA~~iA~lp~~ 69 (518) T protein:vir:78 1 MLLANGQTLSAP--AMAELSPQ---MQDSYYYAPAVG-MQLER--QF---SLYGGIYKNQPWVRTVIAKRAQALARLPVK 69 (518) T ss_pred CcccCceeeccc--hhhhhhhh---hhhcccccceec-eeccc--cc---chhhHHhhhhHHHHHHHHHHHHhhccCceE Confidence 00 00111000 00011111 112121211000 00000 00 000000011234455677777766666766 Q ss_pred ecC--Cch---hHHHHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCC Q lcl|Aclame:pro 121 FKH--TDD---EVVKRIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHE 189 (492) Q Consensus 121 ~~~--~d~---~~~~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~ 189 (492) +-- .+. .....+..++. |. ...+...+..+.+.+|.+|+++-++..|++ .+..++|..+.+..+... . T Consensus 70 l~~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~-~ 148 (518) T protein:vir:78 70 CMFTSGDTETEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRT-G 148 (518) T ss_pred EEEEcCCccccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCC-C Confidence 521 111 11112222332 32 335666778889999999999999998886 478888988887776421 1 Q ss_pred ceEEEEEeeeeccce--eEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC----c-cCCCCcH Q lcl|Aclame:pro 190 ELEAFIRMYKLENET--KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----N-DLEISDI 262 (492) Q Consensus 190 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n-~~~~s~~ 262 (492) .+.+ + +...... ....+.... |+++++ . ..|.|.+ T Consensus 149 ~~~y--~-~~~~~~~~~~~~~~~~~e-----------------------------------IiHir~~~~dg~~~G~Spi 190 (518) T protein:vir:78 149 RYEY--Y-FQAGAGVGTQLVSFADDE-----------------------------------VVPIRFFNPDGLERGLSLM 190 (518) T ss_pred EEEE--E-EEecCCccceeEEecCCc-----------------------------------EEEecCCCCCcccccccHH Confidence 1111 1 1111110 000001111 222221 1 2467777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhh--------hhccceecCCCCcceeeecccCH Q lcl|Aclame:pro 263 FMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVPV 331 (492) Q Consensus 263 ~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~l~~~~~~ 331 (492) ......+.....+..-..+.+...+.|-.++... +.+....++..+ ..++++.++++.+.+.++..... T Consensus 191 ~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~ls~e~~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d 270 (518) T protein:vir:78 191 ESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSPEAQQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVE 270 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhH Confidence 7666666655555555555566666776665532 222222233222 12345566666555555443334 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Q lcl|Aclame:pro 332 ENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSG-V--ALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEH 407 (492) Q Consensus 332 ~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg-~--Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~ 407 (492) ..+.+..+..+..|+..=++|..-.+... ++-|. . .+.+....+.-.+ ..+...+.+ .++... ... T Consensus 271 ~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~~~~f~~~tL~P~~----~~ie~eln~---~L~~~~---~~~ 340 (518) T protein:vir:78 271 MQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAFYRDTMAIPI----ARIQSAMDK---YVGQYW---VRK 340 (518) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHHHHHHHHHHH----HHHHHHHHH---hhcccc---cCc Confidence 44555566666777777777754332221 11111 1 1111111111111 112222211 111111 112 Q ss_pred eeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHH-H------HHHHHHHHHHHHHhhccccCCC Q lcl|Aclame:pro 408 KDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQA-E------LERIEQEQTEYNKQLPNLDDGG 476 (492) Q Consensus 408 ~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~-E------~~ri~~E~~~~~~~~~~~~~~~ 476 (492) ..+++..+.-+..|..+.++++.++ .|+++.-.+.++++. ++++.. + +..+..-. .....+ T Consensus 341 ~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~gD~~~v~~n~~pl~~~~--------~~~~~g 412 (518) T protein:vir:78 341 NRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADELYANSALQPLGATP--------DGAVEG 412 (518) T ss_pred ceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccceeccccc--------ccccCC Confidence 2345555666778999999998887 478998888887653 332110 0 11111000 000000 Q ss_pred CCCCCcCCCCC-----CCC--CC Q lcl|Aclame:pro 477 ADSAQQQERSN-----NKE--SE 492 (492) Q Consensus 477 ~~~~~~~~~~~-----~~~--~e 492 (492) +....+++..+ .++ ++ T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~ 435 (518) T protein:vir:78 413 EEAPAPKRPASTPVASLDQSPPA 435 (518) T ss_pred CCCCCCCCCCcccccccccCccc Confidence 00000000000 000 00 No 180 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=97.43 E-value=6.9e-05 Score=43.41 Aligned_cols=442 Identities=13% Similarity=0.053 Sum_probs=174.1 Q ss_pred hhHHHHHHHHHhcCCceecc--CCCcHHHHHHHHhhcCCC----hhhHHHHHH---------------HHHHHH------ Q lcl|Aclame:pro 4 IQLISQVAQALIKGGNILYP--SQPTQTEIFDAIVRTNNK----PETLEEMIV---------------RYIKQH------ 56 (492) Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~l~---------------~~i~~~------ 56 (492) ..-+..+.|-|+-++|..-+ |++......+.+.+..+- |..+-..+. +.+++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~i~~pf 80 (945) T protein:vir:10 1 MKSLENIIKGFIVNANEQKRPSFSSNIKANVDSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPY 80 (945) T ss_pred CchhhhHhhhheeccccccCccccccchhchhhhhcccCCCCcchhhhhhhhhccceeeeeeeeehhhhHHHhhcccccc Confidence 34455667888888887643 455555555555543332 221111000 000000 Q ss_pred HHHH-HHHHHHHHHhcCCCc-cccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec--CCchh----- Q lcl|Aclame:pro 57 LEKL-PEISIGQEYYEQRPD-IVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK--HTDDE----- 127 (492) Q Consensus 57 ~~~~-~~~~~~~~YY~G~~~-i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~d~~----- 127 (492) +.+. ++.-.+.. +.|++. ..........-..... ..+......-....|+..++-+.+-|+++- .++.. T Consensus 81 kkk~~~~~~d~f~-~s~es~s~vtsls~pdaf~~vnV-s~~~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~ 158 (945) T protein:vir:10 81 NHQEPPFKFNLFE-YSPESLMYLPSISDPDAFFLINL-FRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYL 158 (945) T ss_pred cccccchhhhhhh-ccCccceecccccCccceeeehh-hhhhhhccHHHHHHHHHHHhhhccCceEEEEecccCcccccc Confidence 0000 00000111 112110 0000000000000000 001111123344467777777777787651 11110 Q ss_pred ----HHHHHHHHHh--cc-HH------HHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEE Q lcl|Aclame:pro 128 ----VVKRIDEVLG--NR-FD------DKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEA 193 (492) Q Consensus 128 ----~~~~l~~~~~--n~-~~------~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~ 193 (492) ....+..++. |. +. .+...+..+.+.+|.+|+.+.++.+|++ .+..++|..+.+..++.. .... T Consensus 159 kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdPs~Vti~~ddDG--~~~y 236 (945) T protein:vir:10 159 KRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILSEDT--GIVV 236 (945) T ss_pred cccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCC--cEEE Confidence 0111222221 32 11 2445567889999999999999998987 588899998887765432 1111 Q ss_pred EEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHH Q lcl|Aclame:pro 194 FIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTL 268 (492) Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~l 268 (492) ++....++.....+....+ |=.+...+ ...|.|.++..... T Consensus 237 --~Yv~~idG~~~~~v~a~Dv--------------------------------Ilhirn~s~DG~~~GyGlSPIeaa~~a 282 (945) T protein:vir:10 237 --GYVQEVDGAIVAHFDKRDV--------------------------------VLFRQNLTPDVYMYGYSLPPIEILYKV 282 (945) T ss_pred --EEEEecCCceEEEecCCce--------------------------------EEEeccCCCCcccccCCchHHHHHHHH Confidence 1111111111111111100 00000000 11245555544444 Q ss_pred HHHHHHHHHHHHHHHH-hcCCc--eEEEecCC-----------cccchhhHHhhh-------hccceecCCCCcceeeec Q lcl|Aclame:pro 269 IDAYNRRLSDLSNTFK-DSNEL--TYVLKNYD-----------DQELPEFKRLLR-------YYGAIKVSDNGGVDTIQV 327 (492) Q Consensus 269 iD~~~~~~s~~~~~~~-~~~~~--~l~~~g~~-----------~~~~~~~~~~~~-------~~~~~~~~~~~d~~~l~~ 327 (492) ++....+.....+.+. ..+.| ++.+.|.. .+....++..+. .++.+.+++|.+.+.++. T Consensus 283 I~~alAaek~aar~FskNGa~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~ 362 (945) T protein:vir:10 283 ILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKG 362 (945) T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccC Confidence 4333333222233332 22344 34443321 111222222211 122333455545444444 Q ss_pred ccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCc Q lcl|Aclame:pro 328 EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLN-LKADKLARKAKVAIQELLWFVFEHFDIKGE 406 (492) Q Consensus 328 ~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~-~k~~~~~~~~~~~l~~~~~li~~~~~~~~~ 406 (492) ......+.+..+..+..|+..=++|..-.+...+ .++..++....... ....-....+...+.+.+ . ...+ T Consensus 363 s~~DaQfLEsrkfs~eeIArAFGVPP~lLG~~e~-st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkL---l----~~~e 434 (945) T protein:vir:10 363 KRRDMQFKELAEFVARKICAVYQVSPQDVGILEG-SNKATAEVMASLTKAKGLEPLMATISKGFDEVV---S----EFRN 434 (945) T ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCHHHcccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c----cccc Confidence 4444555667777778888888888655432211 11111221111111 112222222222222211 1 1122 Q ss_pred ceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHH---HH--HHHHHHHHhhccccCCCC Q lcl|Aclame:pro 407 HKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELER---IE--QEQTEYNKQLPNLDDGGA 477 (492) Q Consensus 407 ~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~r---i~--~E~~~~~~~~~~~~~~~~ 477 (492) ...+.+.|+.....+..+.++++.++ .|+++.-.+.++++. +++-+.-+-. +. .+.....+...+.....+ T Consensus 435 g~~i~fdFd~ldl~D~ksraEal~kli~sGiLTiNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~ 514 (945) T protein:vir:10 435 EKDIKLWFKEDDLEKERDWWNIIQGQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQA 514 (945) T ss_pred CceeEEEecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccccCCCCcccccC Confidence 34677888777667888888888876 478999888887743 2211111100 00 000000000000000000 Q ss_pred CCCCcCCCCCCCCC-------C Q lcl|Aclame:pro 478 DSAQQQERSNNKES-------E 492 (492) Q Consensus 478 ~~~~~~~~~~~~~~-------e 492 (492) .. +++.+.+++.+ | T Consensus 515 ~~-dqp~~kGGe~dEns~~psE 535 (945) T protein:vir:10 515 MA-DQPSQQGGGVDENSSVPSE 535 (945) T ss_pred CC-CCCCCCCCCCCCCCCCCCc Confidence 00 01111111101 1 No 181 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=97.38 E-value=8.1e-05 Score=43.01 Aligned_cols=373 Identities=8% Similarity=-0.004 Sum_probs=160.3 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCC- Q lcl|Aclame:pro 47 EMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT- 124 (492) Q Consensus 47 ~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~- 124 (492) -++.++.++... .......+...+-+..... ....+ . ++.=+.++-.-..|+.+++-+.+-|+++-.. T Consensus 1 ~~f~~~f~r~~~~~~~~~~~~~~~~~~~~~~~-~g~~v------~---~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~~~~ 70 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTTPAELAEAIGLSYDTY-TGKRI------S---SQRAMRLTAVYSCVRVLAESVGMLPCSLYKIS 70 (413) T ss_pred CccchhhccCccCCccchHHHHHhhhcCcccc-cCcee------c---hhhhhccHHHHHHHHHHHHhhhhCceEEEEec Confidence 112222221111 1111111222222211000 00000 0 0000112334456777777776667655221 Q ss_pred --------chhHHHHHHHHHhc---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceE Q lcl|Aclame:pro 125 --------DDEVVKRIDEVLGN---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELE 192 (492) Q Consensus 125 --------d~~~~~~l~~~~~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~ 192 (492) +.....+|.. .-| ....+...+....+.+|.||+++..+ .|++ .+..++|..+.+..+.. ..+. T Consensus 71 ~~~~~~~~~~~~~~lL~~-~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~--~~~~ 146 (413) T protein:vir:48 71 GTLKTRVVDERLHKLVSA-KPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQ--WQPV 146 (413) T ss_pred CCcceeecccHHHHHHHh-hccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCC--ceEE Confidence 1112222211 012 34467777888999999999998776 4665 46778888887776632 2222 Q ss_pred EEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHH Q lcl|Aclame:pro 193 AFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAY 272 (492) Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~ 272 (492) +. +....+.. ..+....+.++. ..+ .+...|.|.+......++.. T Consensus 147 y~---~~~~~g~~-~~~~~~evih~~---------------------------~~~----~d~~~G~s~i~~~~~~i~~~ 191 (413) T protein:vir:48 147 YQ---VTFPDGSV-DVLTQDEIWHVR---------------------------TLT----LDGLVGLNPIAYAREAISLA 191 (413) T ss_pred EE---EEecCceE-EEEccccEEEec---------------------------CcC----CCCcccccHHHHHHHHHHHH Confidence 11 11111111 111111111110 000 12235778787777777766 Q ss_pred HHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecCCCCcceeeecccCHHHHHHHHHHH Q lcl|Aclame:pro 273 NRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDEL 341 (492) Q Consensus 273 ~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l 341 (492) ..+..-..+.+...+.|-.++... +.+..+.+...+. .++++.++++.+++.+........+.+..+.. T Consensus 192 ~~~~~~~~~~~~ng~~p~gil~~~~~~~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 271 (413) T protein:vir:48 192 AATEEHGARLFGNGAVTSGVLRTEQKLTPDAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQ 271 (413) T ss_pred HHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHH Confidence 665555555566666666555542 2222233333221 12344555555555554433444556667777 Q ss_pred HHHHHHHhCCCCCCccccc-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCc--ceeeeEE Q lcl|Aclame:pro 342 YQKIMLFGQAVDFSSDKFG-SA-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKGE--HKDVDIS 413 (492) Q Consensus 342 ~~~i~~~a~~p~~~~~~~~-~~-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~~--~~~i~i~ 413 (492) +..|+..-++|..-.+..+ ++ .+....... .+..+|.=+++.+...++ ...+ ...+++. T Consensus 272 ~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~-------------f~~~~i~P~~~~ie~~l~~~L~~~~~~~~~~~~fd 338 (413) T protein:vir:48 272 LEEICRLFRVPLHMVQNTDRATFNNIEELGLG-------------FINYSLVPYLTRIEQRINTGLVRESKQGKFYAKFN 338 (413) T ss_pred HHHHHHHhCCCHHHhCCCcCCCcccHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhccCccccCCeEEEEe Confidence 7888888888765443221 11 111111111 111122222222211111 1111 2234555 Q ss_pred eCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) +...+-.|..+.++++.++ .|+++.-.+.++++. ++.-+.-+ ...........+.+.+ +...+++ T Consensus 339 ~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~~---------~~~n~~~~~~~~~~~~--~~~~~~~ 407 (413) T protein:vir:48 339 AGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYL---------TPMNMTTSPSAGDDNG--KKKESGD 407 (413) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceee---------ccccccccccccccCC--CCCCCCC Confidence 5566667899999999887 478998888887753 22100000 0000011111111111 1111112 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) ++| T Consensus 408 ~~~ 410 (413) T protein:vir:48 408 ADK 410 (413) T ss_pred ccc Confidence 222 No 182 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=97.32 E-value=9.7e-05 Score=42.60 Aligned_cols=378 Identities=11% Similarity=0.026 Sum_probs=149.4 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccccccccccccccccccccchHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEY-YEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLV 107 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~Y-Y~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~iv 107 (492) |.+|.. ..++.++ +. +-...+... ..+-.+. ........... -.+.-+..+-....| T Consensus 1 m~~~~~-----------~~~~~~~----~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~v--~~~~a~~~~~v~~~i 58 (412) T protein:vir:26 1 MNVIAK-----------ENIVTRI----KK--KLIDNWIDQSTSKLYDF---SPWKNRSFWGV--INNTLETNETIFSAI 58 (412) T ss_pred Cccchh-----------hhhhhhh----hh--hHhhhhhcccccccccc---cccCCcccccc--chhhhhccHHHHHHH Confidence 111110 0011000 00 000000000 0010000 00000000000 001111223344456 Q ss_pred HHHHHhhhcCCeeecCCchhHHH-HHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceE Q lcl|Aclame:pro 108 DQKVSYIVGKPIAFKHTDDEVVK-RIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGI 180 (492) Q Consensus 108 d~~~~~l~g~~~~~~~~d~~~~~-~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~ 180 (492) +.+++-+..-|+.+--..+.... ....+.. | .-..+...+..+++.+|.||+++.++..|++ .+..++|..+. T Consensus 59 ~~ia~~iA~lp~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~ 138 (412) T protein:vir:26 59 TKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVE 138 (412) T ss_pred HHHHHhHhhCceeEeeccccccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeE Confidence 66666666667765322222212 2222332 3 2345667788899999999999999998886 57788888888 Q ss_pred EEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----c Q lcl|Aclame:pro 181 PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----N 255 (492) Q Consensus 181 ~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n 255 (492) +..++.. +.+.+ + +....+... .+.... |+++++ . T Consensus 139 v~~~~~~-~~~~y--~-~~~~~g~~~-~~~~~e-----------------------------------vih~~~~~~~~~ 178 (412) T protein:vir:26 139 MLIENQS-RELYY--S-IHAATGNKL-IVHNMD-----------------------------------MLHFKHIVASNM 178 (412) T ss_pred EEEeCCC-cEEEE--E-EEcCCceEE-EEcccc-----------------------------------EEEeCCCCCCCC Confidence 7766432 11111 0 011111100 011111 122221 2 Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEe-cCC--cccchhhHHhh----h-hccceecCCCCcceeee Q lcl|Aclame:pro 256 DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNE-LTYVLK-NYD--DQELPEFKRLL----R-YYGAIKVSDNGGVDTIQ 326 (492) Q Consensus 256 ~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~-~~l~~~-g~~--~~~~~~~~~~~----~-~~~~~~~~~~~d~~~l~ 326 (492) ..|.|.++-....++..+.+.. . + +..+.. +-.++. +.. ++........+ . .++++.++++.+++.++ T Consensus 179 ~~G~s~i~~~~~~i~~~~a~~~-~-~-~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~ 255 (412) T protein:vir:26 179 VQGISPIDVLKNTTDFDNAVRT-F-N-LTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLP 255 (412) T ss_pred cccccHHHHHHHHHHHHHHHHH-H-H-HHhcCCCCceEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcC Confidence 2467777665555554333321 1 1 222222 222322 211 22222222222 1 22344555554554444 Q ss_pred cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---- Q lcl|Aclame:pro 327 VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD---- 402 (492) Q Consensus 327 ~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~---- 402 (492) .......+.+..+..+..|+..=++|..-.+..++ .+...++... ......+|.-.+..+...++ T Consensus 256 ~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~-~~~sn~e~~~----------~~f~~~~l~P~~~~ie~~ln~kLl 324 (412) T protein:vir:26 256 KKYVSEDIVASENLTRERVANVFQLPSVFLNARSN-TNFAKNEELN----------RFYLQHTLLPIVKQYEEEFNRKLL 324 (412) T ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC-CCcccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhcC Confidence 33333445555666677787777787654432211 1111111110 11111222222222222211 Q ss_pred -cCC--cceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCC Q lcl|Aclame:pro 403 -IKG--EHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGA 477 (492) Q Consensus 403 -~~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~ 477 (492) ... ....+++.+..-+..|..+.++++.++ +|+++.-.+++.++.-.- +..++.- ......+.. . T Consensus 325 ~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~--~ggD~~~-----~~~n~~~~~---~ 394 (412) T protein:vir:26 325 TKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPV--EGGDKPL-----ISGDLYPID---T 394 (412) T ss_pred CcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--CCcCeee-----ecccccccc---c Confidence 111 112344555566777999999998887 478999888887753210 0000000 000000000 0 Q ss_pred CCCCcCCCCCCCCCC Q lcl|Aclame:pro 478 DSAQQQERSNNKESE 492 (492) Q Consensus 478 ~~~~~~~~~~~~~~e 492 (492) ....+....++++++ T Consensus 395 ~~~~~~~~~gG~~n~ 409 (412) T protein:vir:26 395 PLELRKSLKGGDKNV 409 (412) T ss_pred chhhcccccCCCCCc Confidence 000011111111111 No 183 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=97.31 E-value=9.8e-05 Score=42.56 Aligned_cols=365 Identities=11% Similarity=0.022 Sum_probs=155.2 Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHhcCCC--ccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC Q lcl|Aclame:pro 48 MIVRYIKQHLEKLP--EISIGQEYYEQRP--DIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) Q Consensus 48 ~l~~~i~~~~~~~~--~~~~~~~YY~G~~--~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 123 (492) ++..+.+....... .-.....+..... .+.. ......+. ...+..-+.++-...+|+.+++-+-+-|+.+.. T Consensus 1 m~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~--~v~~~~al~~~~v~~~v~~ia~~ia~lp~~~~~ 76 (392) T protein:vir:74 1 MILPILNFINQTNDPPEAGSVQSYFPDGNDAQIME--SLLGDNNE--WVSARAALRNSDLFSIILQLSSDLAIVKINAEK 76 (392) T ss_pred CcchhhhhhhcccCcccccccccccccCchhhhhh--hccCCCCc--ccchhhhhcchHHHHHHHHHHHhhccCceeecc Confidence 11111111110000 0000000000000 0000 00000000 000000011222344666666666666766543 Q ss_pred CchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeec Q lcl|Aclame:pro 124 TDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLE 201 (492) Q Consensus 124 ~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~ 201 (492) ... ..+++.=+. ..-..+...+..+++.+|.||+.+-++.+|++ .+..++|..+.+..+.. .+.+.+ ++.... T Consensus 77 ~~~--~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~-~~~~~y--~~~~~~ 151 (392) T protein:vir:74 77 KKN--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-ENGMYY--NITFDD 151 (392) T ss_pred chh--hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCC-CceEEE--EEEecC Confidence 222 122221111 12345667778899999999999999988886 67888888887766532 122211 111000 Q ss_pred c-ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 202 N-ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRR 275 (492) Q Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~ 275 (492) . ......+.... |++++. ...|.|.+......++....+ T Consensus 152 ~~~~~~~~~~~~e-----------------------------------vih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~ 196 (392) T protein:vir:74 152 PKIEPILQAPQSD-----------------------------------LIHMKLLSIDGGKTGISPLYSLRRESKIQRAS 196 (392) T ss_pred CccceeEEEcCcc-----------------------------------EEEecCCCCCCccccccHHHHHHHHHHHHHHH Confidence 0 00000011111 222221 134788887777777666666 Q ss_pred HHHHHHHHHhcCCceEEEe--cCCccc---chhhHHh----hhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 276 LSDLSNTFKDSNELTYVLK--NYDDQE---LPEFKRL----LRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIM 346 (492) Q Consensus 276 ~s~~~~~~~~~~~~~l~~~--g~~~~~---~~~~~~~----~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~ 346 (492) ..-..+.+.....|-.+++ +....+ ...+... ...++++.++++.+++.+........+.+..+..+..|+ T Consensus 197 ~~~~~~~f~ng~~p~~il~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia 276 (392) T protein:vir:74 197 DRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYA 276 (392) T ss_pred HHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHH Confidence 5555666666666665544 321111 1111111 122345556665555555444444556666777778888 Q ss_pred HHhCCCCCCccccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHH Q lcl|Aclame:pro 347 LFGQAVDFSSDKFGSAPS-GVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQ 425 (492) Q Consensus 347 ~~a~~p~~~~~~~~~~~S-g~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~ 425 (492) ..=++|..-.+..+.+.| ..+.+. .+..+|.-.++.+...++..-- ..+++.+....-.|..+. T Consensus 277 ~~fgVPp~~lg~~~~~~~~~e~~~~--------------~~~~~l~p~~~~ie~~l~~~l~-~~~~~~~~~~~~~d~~~~ 341 (392) T protein:vir:74 277 KVYGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNY 341 (392) T ss_pred HHhCCCHHHhCCCCCcccHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcc-chhcccchhhhcCCHHHH Confidence 877888655433222222 222221 1222222222222222211100 112233333344566777 Q ss_pred HHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCC Q lcl|Aclame:pro 426 VQTAQQS--MGIVSHETVLENH---PFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQE 484 (492) Q Consensus 426 ~~~~~k~--~g~vs~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 484 (492) ++.+.++ .|+++...+.+++ |+.. .|+.+ ...+....++ +..++.. T Consensus 342 ~~~~~~l~~~g~~t~near~~~~~~g~~p---ne~r~--------~enl~~~~~G--d~~~p~p 392 (392) T protein:vir:74 342 LSTISTATRWGALAENQATFVLQEAGYIP---KDLPA--------PENTNKKTTG--QSNEPVP 392 (392) T ss_pred HHHHHHHHhCCCcCHHHHHHHHHhCCCCc---cccch--------hcCCCCCCCC--CCCCCCC Confidence 7777776 4789988877654 4432 12211 1112222111 1111110 No 184 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=97.31 E-value=0.0001 Score=42.52 Aligned_cols=418 Identities=12% Similarity=0.092 Sum_probs=147.5 Q ss_pred HHHhcCCceeccCCCcHHHHHHHHhhcCCChhhH--------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-----c Q lcl|Aclame:pro 12 QALIKGGNILYPSQPTQTEIFDAIVRTNNKPETL--------EEMIVRYIKQHLEKLPEISIGQEYYEQRPDIV-----K 78 (492) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~-----~ 78 (492) -++ -..+-+.|..-++.... ++.|.+.+.-- | ....+-+.|-.-.. . T Consensus 1 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~g~ 60 (535) T protein:vir:10 1 MAI--------------LKDLRNAFSLSNKKSTSYIELGDYDKDIVNKAIRPG-----R-ASARDTVDGIDIADGNVAGQ 60 (535) T ss_pred Chh--------------hHHHHHHHHhhhhhhhhhHHHhhhhHHHHHhhhhhh-----h-hhhhccccccccccCCcccc Confidence 000 11111111100000000 01111111100 0 00122222211000 0 Q ss_pred ccccccccc-cccccccccccccchHHHHHHHHHHhh-------------hcCCeeecC-----Cchh--HHHHHHHHHh Q lcl|Aclame:pro 79 EPKPVDATG-AVDPLKPDDRMITNFHANLVDQKVSYI-------------VGKPIAFKH-----TDDE--VVKRIDEVLG 137 (492) Q Consensus 79 ~~~~~~~~~-~~~~~~~~~ri~~n~~~~ivd~~~~~l-------------~g~~~~~~~-----~d~~--~~~~l~~~~~ 137 (492) +.+...... ....... .-...+..+.++++.+..+ .+-|+.+.- .... ....+..++. T Consensus 61 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~ 139 (535) T protein:vir:10 61 YSVASISDVLSTKKLLK-AYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIY 139 (535) T ss_pred cccCccccccCHHHHHH-HhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHH Confidence 000000000 0000000 0001122233443333221 123443321 1111 1112333332 Q ss_pred ---ccH-------HHHHHHHHHHHHhcC-eEEEEEEeCCCCceE-EEEEcccceEEEecCCCCCceEEEEEeeeecccee Q lcl|Aclame:pro 138 ---NRF-------DDKLHSVLTGASNKG-IEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETK 205 (492) Q Consensus 138 ---n~~-------~~~~~~~~~~~~~~G-~~~~~v~~d~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~ 205 (492) |.+ ..+...+..+.+.+| .+|+.+..+..|++. +..++|..+.+..+......... +|....... T Consensus 140 ~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~---~~~~~~~~~ 216 (535) T protein:vir:10 140 NTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPRK---FEQFVSETK 216 (535) T ss_pred hCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCceE---EEEEecCce Confidence 321 134455666666665 679999999888874 88899999988766432211111 111111110 Q ss_pred EEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC--------ccCCCCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 206 VEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN--------NDLEISDIFMYKTLIDAYNRRLS 277 (492) Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n--------n~~~~s~~~~v~~liD~~~~~~s 277 (492) ...+.... |++|+. ...|.|.++.....+.....+.. T Consensus 217 ~~~~~~~e-----------------------------------iih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~ 261 (535) T protein:vir:10 217 SVKFSERN-----------------------------------LTFINYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQ 261 (535) T ss_pred eEEECccc-----------------------------------EEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHH Confidence 00011111 222221 12477777777777766666555 Q ss_pred HHHHHHHhcCCceEEE--ecCC-----cccchhhHHhhhh--------ccceecCCCCcceeeecccC--HHHHHHHHHH Q lcl|Aclame:pro 278 DLSNTFKDSNELTYVL--KNYD-----DQELPEFKRLLRY--------YGAIKVSDNGGVDTIQVEVP--VENSKKYLDE 340 (492) Q Consensus 278 ~~~~~~~~~~~~~l~~--~g~~-----~~~~~~~~~~~~~--------~~~~~~~~~~d~~~l~~~~~--~~~~~~~i~~ 340 (492) -..+.+...+.|-.++ .+.. .+....++..+.. +++..+ .+++++|.....+ ...+....+. T Consensus 262 ~~~~~f~ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl-~~~g~~~~~l~~~~~D~qfle~~~~ 340 (535) T protein:vir:10 262 FNARFFSQGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPIL-AAKDAKFVNMTQNSRDMEFDKFLNF 340 (535) T ss_pred HHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccc-cCCCceEEecCCChhHHHHHHHHHH Confidence 5555566666664443 3321 1222223322211 122222 3334565544433 3445555566 Q ss_pred HHHHHHHHhCCCCCCccccc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcceeeeEE Q lcl|Aclame:pro 341 LYQKIMLFGQAVDFSSDKFG----SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---KGEHKDVDIS 413 (492) Q Consensus 341 l~~~i~~~a~~p~~~~~~~~----~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~i~ 413 (492) .+..|+..=++|.+-.+-.. +|.++.....--..++. ........+|.-.++.+...++. ......+.+. T Consensus 341 ~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~---~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~~~~~~f~ 417 (535) T protein:vir:10 341 MIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGSTAKA---KLESSKDKGLTPLLSFIEQVINDKIMRYVDTDYRFS 417 (535) T ss_pred HHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccccCCeEEEE Confidence 66777777677765432211 11111111110011111 11112222233333332222211 1111356788 Q ss_pred eCCCCCcCHHHHHHHHHHH-hccCChHHHHHhCCC--CCCHHHHHHHHHHHHH-----HHHHhhcccc-CCCCCCCC--- Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQS-MGIVSHETVLENHPF--VEDLQAELERIEQEQT-----EYNKQLPNLD-DGGADSAQ--- 481 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~-~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~-----~~~~~~~~~~-~~~~~~~~--- 481 (492) |+.....|..+..++.... .|+++.-.+.++++. +++-+.-+-.+..+.- ......+... +.+...++ T Consensus 418 f~~l~~~d~~~r~~~~~~~~~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 497 (535) T protein:vir:10 418 FTLGDAQDKLQEEQVWKLKLANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFINATGFGQPNVPDSSDDSGSTLGERER 497 (535) T ss_pred eccccccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCCCCCccccccccchhhcccccccccccCCCCCCCccccCCcccc Confidence 8888888887776655432 467888888877643 2211100000000000 0000000000 00000000 Q ss_pred -----------------cCCCCCCCCCC Q lcl|Aclame:pro 482 -----------------QQERSNNKESE 492 (492) Q Consensus 482 -----------------~~~~~~~~~~e 492 (492) +.......+++ T Consensus 498 q~~~~~~~~~~~g~~~~~~~~~~~~~~~ 525 (535) T protein:vir:10 498 QERIQHSKDYEKGKDDPKSPLPKPSESD 525 (535) T ss_pred CcccccccccccCCCCCCCCCCcCCCCC Confidence 00000000000 No 185 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=97.30 E-value=0.0001 Score=42.47 Aligned_cols=373 Identities=8% Similarity=-0.007 Sum_probs=160.6 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee- Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF- 121 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~- 121 (492) +. +.++++..... .+. .......|-.. .... .+. ...+..-+...-...+|+.++.-+.+-|+.+ T Consensus 1 m~----~~~~~~~~~~~-~~~-~~~~~~~~~~~---~~~~---~g~--~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~ 66 (419) T protein:vir:57 1 MF----IPQFWKGRPSE-NRV-NWQVVPGGMRS---SSSQ---AGV--IITPETALALSAVRACVTLLAESVAQLPCVLY 66 (419) T ss_pred Cc----chhhhccCCcc-ccc-ccccccccccc---cccc---CCc--eechHHhhccHHHHHHHHHHHHhhccCceEEE Confidence 11 12221111000 000 00000000000 0000 000 0001111222334556777776666667665 Q ss_pred -cCCch---h--HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCC Q lcl|Aclame:pro 122 -KHTDD---E--VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHE 189 (492) Q Consensus 122 -~~~d~---~--~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~ 189 (492) ..++. . .......+.. | ....+...+..+.+.+|.+|+++.++..|++ .+..++|..+.+..+.. + T Consensus 67 ~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~--g 144 (419) T protein:vir:57 67 RRTENGGREIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPD--G 144 (419) T ss_pred EEcCCCceeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCC--c Confidence 11111 1 1112222322 2 3455667788899999999999999998885 57778888887655432 1 Q ss_pred ceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----CccCCCCcHHHH Q lcl|Aclame:pro 190 ELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----NNDLEISDIFMY 265 (492) Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~~~s~~~~v 265 (492) . .+|...... .++.... |++++ +...|.|.+... T Consensus 145 ~-----~~y~~~~~~--~~~~~~~-----------------------------------vih~r~~~~d~~~G~s~i~~~ 182 (419) T protein:vir:57 145 M-----PYYDIPSIG--EILPMRM-----------------------------------VHHIKSFSLDGYIGTSPIQTN 182 (419) T ss_pred e-----EEEEEcCCc--eEEchhh-----------------------------------EEEecCcCCCCcccccHHHHH Confidence 1 112211111 0011010 12221 123477878777 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEEecC---C----cccchhhHHhhh--------hccceecCCCCcceeeecccC Q lcl|Aclame:pro 266 KTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---D----DQELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVP 330 (492) Q Consensus 266 ~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~----~~~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~~ 330 (492) ...++....+..-..+.+...+.|-.++.-. . .+..+.+..... .++++.++++-+++-++.... T Consensus 183 ~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~ 262 (419) T protein:vir:57 183 PDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNE 262 (419) T ss_pred HHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHHHHHHHHhccccccccceecCCCceEEEcCCChh Confidence 7777665555444555556666665555421 1 111122222221 234555665555555544444 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCC Q lcl|Aclame:pro 331 VENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKG 405 (492) Q Consensus 331 ~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~ 405 (492) ...+.+..+..++.|+..=++|..-.+... ++-|+ ++-. .......+|.-.+..+...++ ... T Consensus 263 d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn--~e~~----------~~~f~~~~l~P~~~~ie~~l~~~ll~~~ 330 (419) T protein:vir:57 263 KAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNN--IEHQ----------GLQYVIYTMLAILKRHESAMMRDLLLPS 330 (419) T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCcccc--HHHH----------HHHHHHHHHHHHHHHHHHHHHhhccCcc Confidence 455667777778888888888865443221 11111 1111 111222223333333222221 111 Q ss_pred c--ceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccCCCCCC Q lcl|Aclame:pro 406 E--HKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLDDGGADS 479 (492) Q Consensus 406 ~--~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~ 479 (492) + ...+++.+...+..|..+.++.+.++ .|+++.-.++++++.- ++-+.-+-- ......+... +.+.+ T Consensus 331 ~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~------~n~~~~~~~~-~~~~~ 403 (419) T protein:vir:57 331 ERRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDKYLTP------LNMVDSKALT-GIGKA 403 (419) T ss_pred ccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeec------cccccccccc-cccCC Confidence 1 22344555566677999999998876 4789999888887642 111000000 0000000000 01111 Q ss_pred CCcCCCCCCCCCC Q lcl|Aclame:pro 480 AQQQERSNNKESE 492 (492) Q Consensus 480 ~~~~~~~~~~~~e 492 (492) ..++.++.+.... T Consensus 404 ~~~~~~~~~~~~~ 416 (419) T protein:vir:57 404 TPQQLKDIEAILC 416 (419) T ss_pred CcccCcchhhhhh Confidence 1111111111111 No 186 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=97.26 E-value=0.00011 Score=42.24 Aligned_cols=367 Identities=11% Similarity=0.032 Sum_probs=153.2 Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCc Q lcl|Aclame:pro 48 MIVRYIKQHLEKL--PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTD 125 (492) Q Consensus 48 ~l~~~i~~~~~~~--~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d 125 (492) ++..+.+...+.. +.......+.....+..-........+.. .....-+.++-...+|+.+++-+.+-|+++...+ T Consensus 1 m~m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~ 78 (392) T protein:vir:10 1 MILPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEW--VSARAALRNSDLFSIILQLSSDLAIVKINAEKKK 78 (392) T ss_pred CcchhhhhhhcccccccccccccccccCchhhhhhhhcCCCCce--echHHhhccHHHHHHHHHHHHhhccCceeeccch Confidence 2222221111100 00000001110000000000000000000 0000001122334466666666666666654322 Q ss_pred hhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeecc- Q lcl|Aclame:pro 126 DEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN- 202 (492) Q Consensus 126 ~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~- 202 (492) . ..++..=+. .....+...+..+.+.+|.||+++-++.+|++ .+..++|..+-+..+.. .+.+.+ ++..... T Consensus 79 ~--~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~-~~~~~y--~~~~~~~~ 153 (392) T protein:vir:10 79 N--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-ENGMYY--NITFDDPK 153 (392) T ss_pred h--hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCC-CceEEE--EEEecCcc Confidence 2 222221111 12345667778899999999999999998886 67888888887766532 111111 1100000 Q ss_pred ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLS 277 (492) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s 277 (492) ......+.... |++++. ...|.|.+......++....+.. T Consensus 154 ~~~~~~~~~~e-----------------------------------iih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~ 198 (392) T protein:vir:10 154 IEPILQAPQSD-----------------------------------LIHMKLLSIDGGKTGISPLYSLRRESKIQRASDR 198 (392) T ss_pred cceeEEEcccc-----------------------------------EEEecCCCCCCccccccHHHHHHHHHHHHHHHHH Confidence 00000011111 222222 13477878777777765555554 Q ss_pred HHHHHHHhcCCceEEE--ecCCcccc---hhhHHh----hhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 278 DLSNTFKDSNELTYVL--KNYDDQEL---PEFKRL----LRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLF 348 (492) Q Consensus 278 ~~~~~~~~~~~~~l~~--~g~~~~~~---~~~~~~----~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~ 348 (492) -....+...+.|-.++ .+....+. ..+... ...++++.++++.+++.+........+.+..+..++.|+.. T Consensus 199 ~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 278 (392) T protein:vir:10 199 LTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKV 278 (392) T ss_pred HHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHH Confidence 4555556666665444 33211111 111111 12234555665555555544444455667777777888887 Q ss_pred hCCCCCCccccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHH Q lcl|Aclame:pro 349 GQAVDFSSDKFGSAPSG-VALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQ 427 (492) Q Consensus 349 a~~p~~~~~~~~~~~Sg-~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~ 427 (492) =++|..-.+..+.+.|. .+.+. .+..+|.-.++.+...++..-- ..+++......-.|..+.+. T Consensus 279 fgVpp~~lg~~~~~~~~~~~~~~--------------f~~~~l~P~~~~ie~~l~~~L~-~~~~~d~~~~~~~d~~~~~~ 343 (392) T protein:vir:10 279 YGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNYLS 343 (392) T ss_pred hCCCHHHhCCCCCcccHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcc-ccccccchhhhccCHHHHHH Confidence 78876554332222221 11111 2222233333322222211100 11222222333345666777 Q ss_pred HHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCC Q lcl|Aclame:pro 428 TAQQS--MGIVSHETVLENH---PFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQE 484 (492) Q Consensus 428 ~~~k~--~g~vs~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 484 (492) .+.++ .|+++...+.+++ |+..| |+.+ .+.+.+..++ +..++.. T Consensus 344 ~~~~l~~~g~~t~nE~r~~l~~~g~~p~---e~r~--------~e~l~~~~~G--d~~~p~p 392 (392) T protein:vir:10 344 TISTATRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTG--QSNEPVP 392 (392) T ss_pred HHHHHHhCCCcCHHHHHHHHHhcCCCcc---ccch--------hcCCCCCCCC--CCCCCCC Confidence 77776 4789987776654 55432 2211 1112222111 1111110 No 187 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=97.26 E-value=0.00011 Score=42.24 Aligned_cols=367 Identities=11% Similarity=0.032 Sum_probs=153.2 Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCc Q lcl|Aclame:pro 48 MIVRYIKQHLEKL--PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTD 125 (492) Q Consensus 48 ~l~~~i~~~~~~~--~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d 125 (492) ++..+.+...+.. +.......+.....+..-........+.. .....-+.++-...+|+.+++-+.+-|+++...+ T Consensus 1 m~m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~ 78 (392) T protein:vir:39 1 MILPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEW--VSARAALRNSDLFSIILQLSSDLAIVKINAEKKK 78 (392) T ss_pred CcchhhhhhhcccccccccccccccccCchhhhhhhhcCCCCce--echHHhhccHHHHHHHHHHHHhhccCceeeccch Confidence 2222221111100 00000001110000000000000000000 0000001122334466666666666666654322 Q ss_pred hhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeecc- Q lcl|Aclame:pro 126 DEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN- 202 (492) Q Consensus 126 ~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~- 202 (492) . ..++..=+. .....+...+..+.+.+|.||+++-++.+|++ .+..++|..+-+..+.. .+.+.+ ++..... T Consensus 79 ~--~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~-~~~~~y--~~~~~~~~ 153 (392) T protein:vir:39 79 N--QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEY-ENGMYY--NITFDDPK 153 (392) T ss_pred h--hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCC-CceEEE--EEEecCcc Confidence 2 222221111 12345667778899999999999999998886 67888888887766532 111111 1100000 Q ss_pred ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLS 277 (492) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s 277 (492) ......+.... |++++. ...|.|.+......++....+.. T Consensus 154 ~~~~~~~~~~e-----------------------------------iih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~ 198 (392) T protein:vir:39 154 IEPILQAPQSD-----------------------------------LIHMKLLSIDGGKTGISPLYSLRRESKIQRASDR 198 (392) T ss_pred cceeEEEcccc-----------------------------------EEEecCCCCCCccccccHHHHHHHHHHHHHHHHH Confidence 00000011111 222222 13477878777777765555554 Q ss_pred HHHHHHHhcCCceEEE--ecCCcccc---hhhHHh----hhhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 278 DLSNTFKDSNELTYVL--KNYDDQEL---PEFKRL----LRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLF 348 (492) Q Consensus 278 ~~~~~~~~~~~~~l~~--~g~~~~~~---~~~~~~----~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~ 348 (492) -....+...+.|-.++ .+....+. ..+... ...++++.++++.+++.+........+.+..+..++.|+.. T Consensus 199 ~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 278 (392) T protein:vir:39 199 LTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKV 278 (392) T ss_pred HHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHH Confidence 4555556666665444 33211111 111111 12234555665555555544444455667777777888887 Q ss_pred hCCCCCCccccccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHH Q lcl|Aclame:pro 349 GQAVDFSSDKFGSAPSG-VALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQ 427 (492) Q Consensus 349 a~~p~~~~~~~~~~~Sg-~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~ 427 (492) =++|..-.+..+.+.|. .+.+. .+..+|.-.++.+...++..-- ..+++......-.|..+.+. T Consensus 279 fgVpp~~lg~~~~~~~~~~~~~~--------------f~~~~l~P~~~~ie~~l~~~L~-~~~~~d~~~~~~~d~~~~~~ 343 (392) T protein:vir:39 279 YGLPDSYIGGQGDQQSSIQQISG--------------MYASALNRYLRPAISELEYKLS-DHISVNMRPAIDPLGDNYLS 343 (392) T ss_pred hCCCHHHhCCCCCcccHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcc-ccccccchhhhccCHHHHHH Confidence 78876554332222221 11111 2222233333322222211100 11222222333345666777 Q ss_pred HHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCC Q lcl|Aclame:pro 428 TAQQS--MGIVSHETVLENH---PFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQE 484 (492) Q Consensus 428 ~~~k~--~g~vs~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 484 (492) .+.++ .|+++...+.+++ |+..| |+.+ .+.+.+..++ +..++.. T Consensus 344 ~~~~l~~~g~~t~nE~r~~l~~~g~~p~---e~r~--------~e~l~~~~~G--d~~~p~p 392 (392) T protein:vir:39 344 TISTATRWGALAENQATFVLQEAGYIPK---DLPA--------PENTNKKTTG--QSNEPVP 392 (392) T ss_pred HHHHHHhCCCcCHHHHHHHHHhcCCCcc---ccch--------hcCCCCCCCC--CCCCCCC Confidence 77776 4789987776654 55432 2211 1112222111 1111110 No 188 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=96.98 E-value=0.00022 Score=40.59 Aligned_cols=375 Identities=11% Similarity=0.025 Sum_probs=149.5 Q ss_pred CChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 40 NKPETLEEMIVR-YIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKP 118 (492) Q Consensus 40 ~~~~~~~~~l~~-~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~ 118 (492) -.++.+...++. ++.+...+ .-..+..+-.. ..+ .... .-.+.-+.+.-....|+.+++-+..-| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~------~~~~--v~~~~~~~~~~V~~ci~~Ia~~ia~lp 66 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQ--STSKLYDFSPW----KNR------SFWG--VINNTLETNETIFSAITKLSNSMASLP 66 (409) T ss_pred CCccchhhhhhhhhhhhhhcc--ccccccccccc----cCc------cccc--cchhhhhccHHHHHHHHHHHHhhhhCc Confidence 112222122111 11111110 00000000000 000 0000 000000122333445666666666667 Q ss_pred eeecCCchhHHH-HHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCce Q lcl|Aclame:pro 119 IAFKHTDDEVVK-RIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEEL 191 (492) Q Consensus 119 ~~~~~~d~~~~~-~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 191 (492) +.+--..+.... ....+.. | .-..+...+..+++.+|.+|+++.++..|++ .+..++|..+-+..++.. +.+ T Consensus 67 ~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~-~~~ 145 (409) T protein:vir:93 67 LKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS-REL 145 (409) T ss_pred eeEeeccccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCC-cEE Confidence 665322222222 2222322 3 2345667778899999999999999988875 577788888877665321 111 Q ss_pred EEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHH Q lcl|Aclame:pro 192 EAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYK 266 (492) Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~ 266 (492) .+ + +....+..++ +.... |+++++ ...|.|.++... T Consensus 146 ~y--~-~~~~~g~~~~-~~~~e-----------------------------------Vih~r~~~~~~~~~G~s~i~~~~ 186 (409) T protein:vir:93 146 YY--S-IHAATGNKLI-VHNMD-----------------------------------MLHFKHIVASNMVQGISPIDVLK 186 (409) T ss_pred EE--E-EEcCCceEEE-Ecccc-----------------------------------EEEeCCCCCCCccccccHHHHHH Confidence 11 0 0111111100 11111 233321 124677776665 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCc-eEEE-ecCC--cccchhhHHhhh-----hccceecCCCCcceeeecccCHHHHHHH Q lcl|Aclame:pro 267 TLIDAYNRRLSDLSNTFKDSNEL-TYVL-KNYD--DQELPEFKRLLR-----YYGAIKVSDNGGVDTIQVEVPVENSKKY 337 (492) Q Consensus 267 ~liD~~~~~~s~~~~~~~~~~~~-~l~~-~g~~--~~~~~~~~~~~~-----~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 337 (492) ..++....+... .+..+..+ -.++ .+.. .+....+...++ .++++.++++.+++.++.......+.+. T Consensus 187 ~~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~ 263 (409) T protein:vir:93 187 NTTDFDNAVRTF---NLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVAS 263 (409) T ss_pred HHHHHHHHHHHH---HHHhcCCCCceEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHH Confidence 555544333211 13333332 2222 2221 222222222221 2334555555555544433333445556 Q ss_pred HHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCC--cceee Q lcl|Aclame:pro 338 LDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-----IKG--EHKDV 410 (492) Q Consensus 338 i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-----~~~--~~~~i 410 (492) .+..+..|+..=++|..-.+..++ .+...++.... .....+|.-++..+...++ ... ....+ T Consensus 264 r~~~~~~Ia~~fgVPp~~lg~~~~-~~~sn~e~~~~----------~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~~~~~ 332 (409) T protein:vir:93 264 ENLTRERVANVFQLPSVFLNARSN-TNFAKNEELNR----------FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYF 332 (409) T ss_pred HHHHHHHHHHHhCCCHHHhCCCCC-CCcccHHHHHH----------HHHHHHHHHHHHHHHHHHHhhcCCcccccCcceE Confidence 666777888877888654432221 11111111111 1122223223333222211 111 11234 Q ss_pred eEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC Q lcl|Aclame:pro 411 DISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN 488 (492) Q Consensus 411 ~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (492) ++.+..-+-.|..+.++++.++. |+++.-.+++.++.-.- +..++.-- .....+. ......++...++ T Consensus 333 ~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~--~ggD~~~~-----~~n~~~~---~~~~~~~~~~~gG 402 (409) T protein:vir:93 333 KFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPV--EGGDKPLI-----SGDLYPI---DTPLELRKSLKGG 402 (409) T ss_pred EeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--CCcCeeee-----ccccccc---ccchhhcccccCC Confidence 44445556678899999988874 78998888887754210 00000000 0000000 0000001111111 Q ss_pred --CCCC Q lcl|Aclame:pro 489 --KESE 492 (492) Q Consensus 489 --~~~e 492 (492) .++| T Consensus 403 ~~n~~e 408 (409) T protein:vir:93 403 DKNVNE 408 (409) T ss_pred CCCcCC Confidence 1111 No 189 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=96.98 E-value=0.00023 Score=40.58 Aligned_cols=372 Identities=10% Similarity=0.000 Sum_probs=161.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec-CCc Q lcl|Aclame:pro 47 EMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK-HTD 125 (492) Q Consensus 47 ~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~-~~d 125 (492) .++++...++...........-.+.|..+.. .. .. +++=+.+.-...+|+..++-+.+-|+.+- ..+ T Consensus 1 m~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~------v~---~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 68 (409) T protein:vir:10 1 MLFRKGFKNQSQEISIDDKKILEWLGINPSE---TY------VN---GKSCLKQATVFGCIRILSDNISKLPIKIYQKKD 68 (409) T ss_pred CcccccccCcCCCCCCChHHHHHHhcCCcCc---ce------ec---hhhhhccHHHHHHHHHHHHhhhhCceEEEEecC Confidence 1111111111111000000000011111000 00 00 00001223334456666666666676551 111 Q ss_pred -h--hH-HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEE Q lcl|Aclame:pro 126 -D--EV-VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFI 195 (492) Q Consensus 126 -~--~~-~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i 195 (492) . .. ......+.. | ....+...+..+.+.+|.||+++.++..|++ .+..++|..+-++.++........-+ T Consensus 69 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~ 148 (409) T protein:vir:10 69 GIKRVPDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNV 148 (409) T ss_pred CeeeccCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceE Confidence 1 00 111222221 3 2346677788899999999999999988886 57788888887776643211111011 Q ss_pred EeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----CccCCCCcHHHHHHHHHH Q lcl|Aclame:pro 196 RMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----NNDLEISDIFMYKTLIDA 271 (492) Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~~~s~~~~v~~liD~ 271 (492) .|...........+.... |++++ +...|.|.++.....++. T Consensus 149 ~y~~~~~~g~~~~~~~~e-----------------------------------vih~r~~~~d~~~G~s~i~~~~~~i~~ 193 (409) T protein:vir:10 149 WYLYTDDLGQRHKFMSDE-----------------------------------ILHFKGLTADGLAGLSVIELLNHLIEN 193 (409) T ss_pred EEEEEeCCceeEEecccc-----------------------------------EEEecCcCCCCcccccHHHHHHHHHHH Confidence 111000000000011111 12221 122477877777777766 Q ss_pred HHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecCCCCcceeeecccCHHHHHHHHHH Q lcl|Aclame:pro 272 YNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 340 (492) Q Consensus 272 ~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~ 340 (492) ...+..-....+...+.|-.+++.. +.+..+.++..+. .++++.++++.+++.+........+.+..+. T Consensus 194 ~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~ 273 (409) T protein:vir:10 194 GKSSETYLNNFFKNGLQVKGLVQYAGDLNPEAEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQL 273 (409) T ss_pred HHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHH Confidence 5555555555566666666555532 1222222222211 2335555655555555444444455666777 Q ss_pred HHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCC--cceeeeEE Q lcl|Aclame:pro 341 LYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-----IKG--EHKDVDIS 413 (492) Q Consensus 341 l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-----~~~--~~~~i~i~ 413 (492) .++.|+..-++|..-.+..+ ..++..++... ...+..+|.-.++.+...++ ... ....+++. T Consensus 274 ~~~~Ia~~fgVPp~~lg~~~-~~~~~~~e~~~----------~~f~~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd 342 (409) T protein:vir:10 274 TIRQIASVFGVKMHQLNDLD-RATHSNITEQN----------REFYIDTLQSILNMYELEINYKLFLISEIKNGFYSKFN 342 (409) T ss_pred HHHHHHHHhCCCHHHcCCCC-CCccccHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEe Confidence 78888888888865443221 11111111111 11122222222222222211 111 11234555 Q ss_pred eCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 414 FNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 414 f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) +..-+-.|..+.++++.++ .|+++.-.++++++. +++-+.-+- ....... ...+++..+. ++ T Consensus 343 ~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD~~~~---------~~n~~~~----~~~~~~~~kg-Ge 408 (409) T protein:vir:10 343 VDTILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEGGDVLLI---------NGNMIPV----KMAGEQYSKG-GE 408 (409) T ss_pred chhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeee---------ccCccch----hhcccccccc-CC Confidence 5566667899999988887 478998888887753 221110000 0000001 0111122222 22 Q ss_pred C Q lcl|Aclame:pro 490 E 490 (492) Q Consensus 490 ~ 490 (492) + T Consensus 409 ~ 409 (409) T protein:vir:10 409 K 409 (409) T ss_pred C Confidence 2 No 190 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=96.95 E-value=0.00024 Score=40.39 Aligned_cols=392 Identities=9% Similarity=-0.025 Sum_probs=161.6 Q ss_pred HhcCCceeccCCC-------cHHHHHHHHhh-------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 14 LIKGGNILYPSQP-------TQTEIFDAIVR-------TNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 14 ~~~~~~~~~~~~~-------~~~~~~~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~ 79 (492) |.|..|-+=...| +..-.+..... .+-.+..+..+|+. ...+..+.+ T Consensus 1 m~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~--------~~~~~ly~~----------- 61 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQG--------KDGLLVYHK----------- 61 (448) T ss_pred CCCCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhcc--------ccchHHHHH----------- Confidence 4444444432221 11000000000 00001111111100 000000000 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCc-----hhHHHHHHHHHhc--------cHHHHHHH Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTD-----DEVVKRIDEVLGN--------RFDDKLHS 146 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d-----~~~~~~l~~~~~n--------~~~~~~~~ 146 (492) .. ......-++.+....+.+.+.++.+.+ ....+.+..+... +|...+.+ T Consensus 62 ------------m~-----~D~hi~s~l~~Rk~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~ 124 (448) T protein:vir:77 62 ------------ML-----SDGTVKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAI 124 (448) T ss_pred ------------Hh-----hChHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHH Confidence 00 123344456666666777887776422 2233445555432 45555555 Q ss_pred HHHHHHhcCeEE-EEEEe-CCCCceEEEEE---cccce-EEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEe Q lcl|Aclame:pro 147 VLTGASNKGIEW-LHPYL-DEEGEFKLFRV---PAEQG-IPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYE 220 (492) Q Consensus 147 ~~~~~~~~G~~~-~~v~~-d~~g~~~i~~~---~p~~~-~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (492) + .++..||.+. +++|. ..+|...+..+ +|... .-.|+... .+. +.+ . T Consensus 125 ~-lda~~~G~s~~Eivw~~~~dg~~~~~~l~~r~~~~~~~f~~~~~~--~l~---------------~~~---------~ 177 (448) T protein:vir:77 125 Y-ENAYIYGMAAGEIVLTLGADGKLILDKIVPIHPFNIDEVLYDEEG--GPK---------------ALK---------L 177 (448) T ss_pred H-HHhhhhcceeEEEEEeecCCCceeeccccccCCCccceeeeecCC--ceE---------------EEe---------c Confidence 5 5788899864 56774 45676543332 22211 11122111 110 000 0 Q ss_pred cceeeeccccccccccccceeccCCccceEeec--CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC-- Q lcl|Aclame:pro 221 NGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK--NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY-- 296 (492) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~--nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~-- 296 (492) .+.. ..........+-+++.+=+.+.. .++.|.|.+..+....--=+..+.+.+.-++.|..|+.+.+-. T Consensus 178 ~~~~------~~~~~~~~~~~lP~~~~i~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vgky~~g 251 (448) T protein:vir:77 178 SGEV------KGGSQFVNGLEIPIWKTVVFLHNDDGSFTGQSALRAAVPHWLAKRALILLINHGLERFMIGVPTLTIPKS 251 (448) T ss_pred CCcc------cccccCCCccccccceEEEEecCCcCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeEEecCCC Confidence 0000 00000001112233333122111 2456778887655544344555678888999999999998843 Q ss_pred -Ccc--cchhhHH---hhh--hccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHH Q lcl|Aclame:pro 297 -DDQ--ELPEFKR---LLR--YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVAL 368 (492) Q Consensus 297 -~~~--~~~~~~~---~~~--~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al 368 (492) +.+ +...... ++. ...+..++++.++++++.......+..+++...+.|...--.--++.+..+| .++.+. T Consensus 252 a~~~~~~~~~l~~av~~i~~g~~a~~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~g-~~~~~~ 330 (448) T protein:vir:77 252 VRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARALGIDFNTVQLNMG-VQAVNI 330 (448) T ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCccCHHHHHHHHHHHHHHHHhccccccccccc-hhhhhh Confidence 221 1111111 121 2234567888899999877665667778888888876544322233233222 222222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhCCC Q lcl|Aclame:pro 369 EFLYTNLNLKADKLARKAKVAIQ-ELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENHPF 447 (492) Q Consensus 369 ~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l~~ 447 (492) .....-.......-.+.+...+. ++++-++. ++..++..-..+.|....+.|..+.++.+.++++++ .+.++ T Consensus 331 ~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~-lNfg~~~~~P~~~f~~~e~eDl~~~a~~~~~l~~~~-----~~~~~- 403 (448) T protein:vir:77 331 GEFVSLTQQTIISLQREFASAVNLYLIPKLVL-PNWPGATRFPRLTFEMEERNDFSAAANLMGMLINAV-----KDSED- 403 (448) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCEEEecCCChhhHHHHHHHhHHHHHHH-----HHHhc- Confidence 21111111112233334444443 34444433 232222223468888889999999999888887532 11111 Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 448 VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 448 v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +..+..+. .+..... ........+++..+.....+ T Consensus 404 ip~~~~~~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 438 (448) T protein:vir:77 404 IPTELKAL-------IDALPSK---MRRALGVVDEVREAVRQPAD 438 (448) T ss_pred CCccCCcC-------CCCCchh---cccccCCCCCCCchhhcchh Confidence 11000000 0000000 00000001111111111111 No 191 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=96.88 E-value=0.00028 Score=40.04 Aligned_cols=415 Identities=10% Similarity=-0.006 Sum_probs=172.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcC--C---- Q lcl|Aclame:pro 45 LEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGK--P---- 118 (492) Q Consensus 45 ~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~--~---- 118 (492) .++.+.+.+.+.+ |-+....++++++=-- +++-... +. ...+...++..+-+...++.+++.|++- | T Consensus 1 mk~~~~~~~~~lk-r~~~e~~w~e~a~~tl--P~~~~~~-~~---~~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp~~~ 73 (510) T protein:vir:78 1 MKSTAAMLWEKLR-DGSVEQRAIEFAKTTL--PYLMVDP-MS---GSRGVVEHDFQSAGALLVNNLAAKLARSLFPTGIP 73 (510) T ss_pred ChhHHHHHHHHHh-ccchHHHHHHHHHhhc--cccccCC-CC---cccccccCcccchHHHHHHHHHHHHHHhhcCCCCc Confidence 4455555555443 3344444555443211 1111100 00 0111112345566777777777777542 2 Q ss_pred -eeecCCch-------------hHHHHHH--------HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcc Q lcl|Aclame:pro 119 -IAFKHTDD-------------EVVKRID--------EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPA 176 (492) Q Consensus 119 -~~~~~~d~-------------~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p 176 (492) +++...+. ++.+.+. .+..++|.....++.++...+|.+.+++ ++++. +++.++- T Consensus 74 WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~--~~~~~-~~~~~pl 150 (510) T protein:vir:78 74 FFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLYR--NSDEA-TVVAWSL 150 (510) T ss_pred ccccCCChHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEE--eCCCC-eEEEEEc Confidence 22332221 1222222 2334688899999999999999986554 45443 4666654 Q ss_pred cceEEEecCCCCCceEEEEEeeeec--------------------cceeEEEEecceEEEEEEec-c----eeeeccccc Q lcl|Aclame:pro 177 EQGIPIWTDKEHEELEAFIRMYKLE--------------------NETKVEYWDKVTVNYYVYEN-G----SLIPDYSNN 231 (492) Q Consensus 177 ~~~~~i~d~~~~~~~~~~i~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~ 231 (492) .+ |.+-.| ..+.+...+|.+... ....+++|+ .+... . ........+ T Consensus 151 ~~-y~v~~d-~~G~vd~i~rr~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~------~V~~~~~~~~~~~sv~~e~d 222 (510) T protein:vir:78 151 RS-YAVRRD-ATGRWMDIVLKQRYKSKDLDDVYKQDLMRAGRNLSGSGSVDLYT------HVQRRKGTAMDYAEMYHEID 222 (510) T ss_pred ce-eEEeeC-CCcCeeEEEeeeeccHHHHHHHhhHHhhhhhhccCCCceEEEEE------EEEeecCCCCcEEEEEEEec Confidence 44 444443 345555555543321 011222222 11110 0 011111111 Q ss_pred cccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHH Q lcl|Aclame:pro 232 LENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKR 306 (492) Q Consensus 232 ~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 306 (492) .. ........++..+|++.+. .+.+|+|-.+...+-+..++.+.-...........|.+.+.-.......... T Consensus 223 g~-~i~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~a~~a~~~~~lv~p~g~~~~~~l~- 300 (510) T protein:vir:78 223 GV-RVGETGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKLGLYELESLEVLNLVDEAKGAVVDDYQ- 300 (510) T ss_pred Ce-eeccccccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCccccchhhhc- Confidence 11 1111222334567777653 3457999999999999999988766666666556665544211111111111 Q ss_pred hhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHH---- Q lcl|Aclame:pro 307 LLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKAD---- 380 (492) Q Consensus 307 ~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~---- 380 (492) .. ..+.+..+..++++.+. ...+.......++.++..|...-. -+... ..+...++..+......+..... T Consensus 301 ~~-~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aF~-~~l~~-~~~~rvTAtEV~~r~~E~~~~LGpv~~ 377 (510) T protein:vir:78 301 DA-EMGDYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAFM-YGANQ-RDAERVTAEEVRITAEEAENTLGGTYS 377 (510) T ss_pred cC-CCceeecCCcccccccccCcccchHHHHHHHHHHHHHHHHHHh-hcccc-CCCCCcCHHHHHHHHHHHHHHhhHHHH Confidence 11 11223333344566543 234556666777777776654221 11221 12234566665554333332222 Q ss_pred H-HHHHHHHHHHHHHHHHHHHhccC---Cc-ceeeeEEeCCCCCcCHHHHHHHH-------HHHhc---c---CChHHH- Q lcl|Aclame:pro 381 K-LARKAKVAIQELLWFVFEHFDIK---GE-HKDVDISFNYNKVANTELQVQTA-------QQSMG---I---VSHETV- 441 (492) Q Consensus 381 ~-~~~~~~~~l~~~~~li~~~~~~~---~~-~~~i~i~f~~~~p~d~~e~~~~~-------~k~~g---~---vs~et~- 441 (492) + ....+..-+.+++.++.+. +.. .+ .....+++...+-+ ++.++.+ ..+.+ + |....+ T Consensus 378 rl~~E~l~Pli~r~~~il~r~-gl~p~p~~~~~~~~v~~is~Lar--aq~~~~l~~~~q~l~~~~~~~q~~~~id~d~~~ 454 (510) T protein:vir:78 378 LLAENLQSPLAYVCLSEVDDA-LLQGLITKQHKPAIETGLPALSR--SAAVQSMLNASQVIAGLAPIAQLDPRISLPKMM 454 (510) T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCCCCcccccceeeecccHHHH--HHHHHHHHHHHHHHHHhcChhhhhhcCCHHHHH Confidence 1 1222233333333333321 211 11 11222333333222 2222211 11111 1 222222 Q ss_pred ---HHhCCCCC-----CHHHHHHHHHHHHHHHHHhh----ccccCCCCCCCCcCCCC Q lcl|Aclame:pro 442 ---LENHPFVE-----DLQAELERIEQEQTEYNKQL----PNLDDGGADSAQQQERS 486 (492) Q Consensus 442 ---l~~l~~v~-----D~~~E~~ri~~E~~~~~~~~----~~~~~~~~~~~~~~~~~ 486 (492) ...++ |+ -.++|++.+.+++.+...+. .......++.+.-...- T Consensus 455 ~~~a~~~G-v~p~~ivrs~eev~a~~~~~~~q~~~~~~~~~a~~~~~~~~~~~~~g~ 510 (510) T protein:vir:78 455 DTIWAAFS-VDTSQFYKSADELQAEAEEQRRQAAQAQAAQETLLEGASDMTNALAGV 510 (510) T ss_pred HHHHHHhC-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCC Confidence 23333 21 12566666555443221111 11111111111111111 No 192 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=96.87 E-value=0.00029 Score=40.01 Aligned_cols=381 Identities=13% Similarity=0.040 Sum_probs=157.5 Q ss_pred ChhhHHHHHHHHHHHHHHHH-HH----H----HHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHH Q lcl|Aclame:pro 41 KPETLEEMIVRYIKQHLEKL-PE----I----SIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKV 111 (492) Q Consensus 41 ~~~~~~~~l~~~i~~~~~~~-~~----~----~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~ 111 (492) -.+.+.+++......-.... .+ + ......+-|.. .. ......... -+.+.=.-.+|+.++ T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~--~g~~v~~~~---al~~~~V~~~i~~ia 69 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRE------SS--SGKKVTVDK---AMKLSAVWACVRLIS 69 (434) T ss_pred CccchhhhhhhcccccchhhhcccccccccCchHHHHHHhcCC------cc--CCceechhh---hhccHHHHHHHHHHH Confidence 12222333333221110000 00 0 00111111110 00 000000000 011111223566666 Q ss_pred HhhhcCCeee---cCCc---h-hHHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccc Q lcl|Aclame:pro 112 SYIVGKPIAF---KHTD---D-EVVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQ 178 (492) Q Consensus 112 ~~l~g~~~~~---~~~d---~-~~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~ 178 (492) .-+..-|+.+ +.+. . ........+.. | .-..+...+..+.+.+|.+|+++..+ .|++ .+..++|.. T Consensus 70 ~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~-~G~~~~L~~l~p~~ 148 (434) T protein:vir:43 70 TSVAGLPLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA-AGRPAALDFLLPSR 148 (434) T ss_pred HhhhhCceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcc Confidence 6666666654 1111 1 11122233322 3 23466777788999999999988766 5765 567788888 Q ss_pred eEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----C Q lcl|Aclame:pro 179 GIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----N 254 (492) Q Consensus 179 ~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----n 254 (492) +-+..+.. +.+.+. +....+.. ..+.... |++++ + T Consensus 149 v~~~~~~~--g~~~y~---~~~~~g~~-~~~~~~e-----------------------------------Vih~~~~~~d 187 (434) T protein:vir:43 149 VDLECDEN--GRLKYF---YTTKKGAR-REIERTN-----------------------------------MLHIPAFTLD 187 (434) T ss_pred eEEEEcCC--CeEEEE---EEecCceE-EEEcccc-----------------------------------EEEecCcCCC Confidence 87776532 222110 11111110 0111111 12222 1 Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh-------hccceecCCCCccee Q lcl|Aclame:pro 255 NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR-------YYGAIKVSDNGGVDT 324 (492) Q Consensus 255 n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~ 324 (492) ...|.|.++.....+.....+..-..+.+...+.|-.+++-. +.+..+.++.... .++++.++++.+.+. T Consensus 188 g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~ 267 (434) T protein:vir:43 188 GRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRILQPAQREEFREYVKSVSGAMNSGRSPVLEQGITPET 267 (434) T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCCCCHHHHHHHHHHHHHhcCccccCCccccCCCceEEE Confidence 234666666655555544444333444455555565555432 2222222222221 233444555444444 Q ss_pred eecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 325 IQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI 403 (492) Q Consensus 325 l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 403 (492) ++.......+.+..+..+..|+..=++|..-.+... ++..+..++..... ....+|.-.+..+...++. T Consensus 268 l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~~~~~----------f~~~~L~P~~~~ie~~ln~ 337 (434) T protein:vir:43 268 IGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQMLA----------FLTFSISSITNQIQQCVNK 337 (434) T ss_pred ccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHHHHHH----------HHHHHHHHHHHHHHHHHHh Confidence 443333445566677778888888888865433221 11112222221111 1122222222222221111 Q ss_pred ----CCc--ceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHH-----HHHHHHHHHHHHHHh Q lcl|Aclame:pro 404 ----KGE--HKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQA-----ELERIEQEQTEYNKQ 468 (492) Q Consensus 404 ----~~~--~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~~-----E~~ri~~E~~~~~~~ 468 (492) ..+ ...+++.+..-+..|..+.++.+.++ .|+++.-.+.++++.- ++-+. -+..++ . T Consensus 338 kL~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~--------~ 409 (434) T protein:vir:43 338 RLLTAPERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKENLPELPGGDILTVQSNLVPID--------Q 409 (434) T ss_pred hcCChhhhcCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccCccchh--------h Confidence 111 12345555566778999999998877 4789998888776432 21110 000110 0 Q ss_pred hccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 469 LPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ...........+......+..++| T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ 433 (434) T protein:vir:43 410 LGQSNKSQAVRAALMNWFSQPEPQ 433 (434) T ss_pred hhccCCCcchhhhhhccCCCCCCC Confidence 111111111111122223333333 No 193 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=96.86 E-value=0.00029 Score=39.96 Aligned_cols=373 Identities=7% Similarity=0.014 Sum_probs=159.3 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~ 122 (492) +.+..+++. .......-.-+.....|..- .... ....... ..-+.+.-...+|+.+++-+..-|+.+- T Consensus 1 m~~~~~~~~----~~~~~s~~~~w~~~~~~~~~---~~~~--~g~~vt~---~~al~~~~v~~~i~~Ia~~iA~lp~~~~ 68 (421) T protein:vir:10 1 MFIPQMFEG----KKRSVSGGGFWEAMLGGVRS---SHSK--AGVMITP---ETALALSAVRACVTLLAESVAQLPVELY 68 (421) T ss_pred CCCcchhcc----cccccCcchhhHHHhhhhcc---Cccc--CCceech---HHhhccHHHHHHHHHHHHhhccCceEEE Confidence 222222211 11100000001111111100 0000 0000000 0001122233466666666666676641 Q ss_pred --CCchh-----HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCC Q lcl|Aclame:pro 123 --HTDDE-----VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHE 189 (492) Q Consensus 123 --~~d~~-----~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~ 189 (492) ..+.. .......+.. | ....+...+..+.+.+|.||+++-++.+|.+ .+..++|..+.++.++. + T Consensus 69 ~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~--g 146 (421) T protein:vir:10 69 RRDKNGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPD--G 146 (421) T ss_pred EEcCCCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCC--c Confidence 11111 1112333332 3 2345666778899999999999999998886 46777888887655432 1 Q ss_pred ceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----CccCCCCcHHHH Q lcl|Aclame:pro 190 ELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----NNDLEISDIFMY 265 (492) Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~~~s~~~~v 265 (492) . .+|..... +.... ... |+++. +...|.|.++.. T Consensus 147 ~-----~~y~~~~~------------------g~~~~----------~~e---------iih~~~~~~d~~~G~spi~~~ 184 (421) T protein:vir:10 147 M-----PYYEIPEI------------------GETLP----------MRM---------MHHVKVFSLDGYIGSSPIQTN 184 (421) T ss_pred e-----EEEEEcCC------------------CcEEc----------hhh---------EEEecCcCCCCcccccHHHHH Confidence 1 11111100 00000 000 12221 123467777776 Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEEecC-------CcccchhhHHhh--------hhccceecCCCCcceeeecccC Q lcl|Aclame:pro 266 KTLIDAYNRRLSDLSNTFKDSNELTYVLKNY-------DDQELPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVP 330 (492) Q Consensus 266 ~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~-------~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~l~~~~~ 330 (492) ...++....+..-..+.+...+.|-.++.-. +.+....+...+ ..++++.++++.+.+.++.... T Consensus 185 ~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~ 264 (421) T protein:vir:10 185 ADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNE 264 (421) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChh Confidence 6666655555444555556666666555421 111112222211 1234555666655555544434 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCC Q lcl|Aclame:pro 331 VENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKG 405 (492) Q Consensus 331 ~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~ 405 (492) ...+.+..+..++.|+..=++|..-.+..+ ++-|. ++.. .......+|.-.+..+...++ ... T Consensus 265 d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn--~e~~----------~~~f~~~tl~P~~~~ie~~ln~kL~~~~ 332 (421) T protein:vir:10 265 KAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATNNN--IEHQ----------GLQFVMYTLLAWLKRHEGALQRDLLLPS 332 (421) T ss_pred HHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCcccc--HHHH----------HHHHHHHHHHHHHHHHHHHHhhhccCcc Confidence 445566666777788887788865433221 11111 1111 011112222222222222111 111 Q ss_pred c--ceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCC Q lcl|Aclame:pro 406 E--HKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADS 479 (492) Q Consensus 406 ~--~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~ 479 (492) + ...+++.+..-+..|..+.++.+.++ .|+++.-.+++.++. +++-+.-+.. ............. T Consensus 333 ~~~~~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~---------~n~~~~~~~~~~~ 403 (421) T protein:vir:10 333 ERRDLYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGGDKYLTP---------LNMVDSAQIIPGD 403 (421) T ss_pred ccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec---------cccccccccccCC Confidence 1 12344444555667899999998887 588999888887753 2221110000 0000011111111 Q ss_pred CCcCCCCCCCCCC Q lcl|Aclame:pro 480 AQQQERSNNKESE 492 (492) Q Consensus 480 ~~~~~~~~~~~~e 492 (492) .++....+.++++ T Consensus 404 ~~~~~~~~~e~d~ 416 (421) T protein:vir:10 404 KKPTAQQMAEIDT 416 (421) T ss_pred CCcccccCccccc Confidence 1222222222333 No 194 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=96.84 E-value=0.0003 Score=39.87 Aligned_cols=400 Identities=14% Similarity=0.065 Sum_probs=154.9 Q ss_pred eccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCcccccccccccccccccccccccc Q lcl|Aclame:pro 21 LYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPE--ISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRM 98 (492) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri 98 (492) +|+| +...-.+.+.- .+... .+.+. .....+||+ +..... ..++.-- T Consensus 1 ~~~~--------------~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~--------pp~~~~------~La~~~~ 49 (540) T protein:vir:41 1 MFNY--------------HLSIKSLEKYR--AIKGD-TDSQALKEDRFEEYVE--------PKVHPL------VLLSLLQ 49 (540) T ss_pred CCCc--------------ccChhhccchh--hhhcc-ccccccccCCCCcccc--------CCCCHH------HHHHHHH Confidence 2222 11100000000 00000 00000 000111110 000000 0000001 Q ss_pred ccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhc---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEE Q lcl|Aclame:pro 99 ITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGN---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRV 174 (492) Q Consensus 99 ~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~ 174 (492) ...+...+|+..+..+.+-|+.+...+......+ -| ....+...+..+.+.+|.||+.+.++..|++ .+..+ T Consensus 50 ~n~~v~scI~~ia~~ia~~~~~i~~~~~~~~~~l----pN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i 125 (540) T protein:vir:41 50 VNPYHASACSIKANDILRTGYLIDGDDGGVEELL----RACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYI 125 (540) T ss_pred hcHHHHHHHHHHHHHHhcCCceEecCccchhhhc----cCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEe Confidence 2356677899999999999988877766554433 23 3456777788899999999999999988876 47778 Q ss_pred cccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC Q lcl|Aclame:pro 175 PAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN 254 (492) Q Consensus 175 ~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n 254 (492) +|..+-+..+.. +++...+.....++....... .. ... .......+..=-|+++++ T Consensus 126 ~~~~V~v~~~~~---------~~~~~~d~~~~~~~~~~~~~~-------~~---~~~-----~g~~~~~~~~~eViHir~ 181 (540) T protein:vir:41 126 PAHTVRVHRDGS---------RYMQTWDGIHVTYFKDYRYEG-------EV---NPD-----NGEDQDGVGANEIIFIHL 181 (540) T ss_pred CCcceEEeEcCc---------eeEeeecCceeeeeecccccc-------ee---ecc-----ccccceeecccceEEecC Confidence 888776654322 111111111111111000000 00 000 000000011112455432 Q ss_pred -----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE--ecCCcccc-----------hhhHHhh-------- Q lcl|Aclame:pro 255 -----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVL--KNYDDQEL-----------PEFKRLL-------- 308 (492) Q Consensus 255 -----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~--~g~~~~~~-----------~~~~~~~-------- 308 (492) ...|.|.+......+.....+..-..+.+...+.|-.++ .|...+.. ..+.... T Consensus 182 ~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (540) T protein:vir:41 182 PSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLK 261 (540) T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchHHHHHHHHHHHHHHHHHhcccc Confidence 225778777655555544444444444455555565444 34321111 0111111 Q ss_pred -hhccceecCC----CCcceeeecc--cCHHHHHHHHHHHHHHHHHHhCCCCCCcccc----c--cchhHHHHHHHHHHH Q lcl|Aclame:pro 309 -RYYGAIKVSD----NGGVDTIQVE--VPVENSKKYLDELYQKIMLFGQAVDFSSDKF----G--SAPSGVALEFLYTNL 375 (492) Q Consensus 309 -~~~~~~~~~~----~~d~~~l~~~--~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~----~--~~~Sg~Al~~~~~~l 375 (492) ..++++.++. +++++|.... .....+.+..+..+..|+..=++|..-.+-. . ++.......+....+ T Consensus 262 ~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL 341 (540) T protein:vir:41 262 EAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVV 341 (540) T ss_pred ccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHH Confidence 1122333321 2345554433 3344566677777788888888886543211 1 122221222222222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCC--cCHHHHHHHHHHHhccCChHHHHHhCCCCC---C Q lcl|Aclame:pro 376 NLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKV--ANTELQVQTAQQSMGIVSHETVLENHPFVE---D 450 (492) Q Consensus 376 ~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p--~d~~e~~~~~~k~~g~vs~et~l~~l~~v~---D 450 (492) .-....+...+.+. ++. .. ...+.+.|+.... .|.++..+.+ ...|+++.-.+.+.++.++ | T Consensus 342 ----~P~~~~ie~~ln~~---L~~----~~-~~~~~i~f~~~~ll~~D~~~~~~~l-v~~G~lT~NE~Re~L~g~e~gdd 408 (540) T protein:vir:41 342 ----RPQQEIVSSVLTDF---IQL----KL-DPGARFVFNEEILMESEFVHNYALL-VQCGVLTPSEVREKLFGLDGGPD 408 (540) T ss_pred ----HHHHHHHHHHHHHh---hhh----cc-CCceEEEecchhhcchHHHHHHHHH-HhCCCCCHHHHHHHhCcCcCCCc Confidence 22222222222221 111 11 1234566654333 2333333322 2358888877776553332 2 Q ss_pred HH--------HHHHHHHHHHH--H--HHHhhccccCCCCCCCCcC----CCCCCCCCC Q lcl|Aclame:pro 451 LQ--------AELERIEQEQT--E--YNKQLPNLDDGGADSAQQQ----ERSNNKESE 492 (492) Q Consensus 451 ~~--------~E~~ri~~E~~--~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~e 492 (492) +- .++..-+++.+ + .......-.+.......++ ++.+.+-+| T Consensus 409 ~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (540) T protein:vir:41 409 MFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLEDKKKKIDE 466 (540) T ss_pred ccccccccccccccccccccCCCCccccccccchhcccccCccccccccccccccccc Confidence 10 11111000000 0 0000000000000000000 000000000 No 195 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=96.84 E-value=0.0003 Score=39.86 Aligned_cols=360 Identities=7% Similarity=-0.046 Sum_probs=142.0 Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEK-LPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 121 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~-~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 121 (492) +.+-..+...-++.... .........+..|.-. ...+ . +..-+...-...+|+.+++-+..-|+++ T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v------~---~~~al~~~~v~~~i~~ia~~ia~~p~~v 67 (385) T protein:vir:10 1 MGLLTPRNFNKRKAKNMVYPSNPAFFTTTVGGMQ----LSYV------S---ALSALQNTNVYSVINRIASDVASAHFKT 67 (385) T ss_pred CccccchhcccccccccccccchhhhhhhccccC----cccc------C---HHHhhccHHHHHHHHHHHHHHhhCceee Confidence 21111100000000000 0000000011111000 0000 0 0000112223446666666666667765 Q ss_pred cCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeee Q lcl|Aclame:pro 122 KHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKL 200 (492) Q Consensus 122 ~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~ 200 (492) . +.....+++.=.. .....+...+..+.+.+|.||+++..+. ..+..++|..+.+..+.. ... +++.. T Consensus 68 ~--~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~---~~~~p~~~~~v~~~~~~~---~~~---~~~~~ 136 (385) T protein:vir:10 68 E--NTATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN---LEHIPNSDVQINYLPGNM---GIV---YTVLE 136 (385) T ss_pred e--ccchhhhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc---eeEeecCCceEEEEEcCC---ceE---EEEEE Confidence 3 2222223321111 1234566667888889999999987643 223333333333222210 000 00000 Q ss_pred ccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-------ccCCCCcHHHHHHHHHHHH Q lcl|Aclame:pro 201 ENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-------NDLEISDIFMYKTLIDAYN 273 (492) Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-------n~~~~s~~~~v~~liD~~~ 273 (492) ........+... -|++++. ...|.|.+......++... T Consensus 137 ~~~~~~~~~~~~-----------------------------------eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~ 181 (385) T protein:vir:10 137 SNDRPQMVLRQD-----------------------------------QMLHFRLMPDPQYRYLIGRSPLESLQNALNLDD 181 (385) T ss_pred cCCceEEEEccc-----------------------------------cEEEeccCCCCcccccccccHHHHHHHHHHHHH Confidence 000000000111 1233321 1247788877777776666 Q ss_pred HHHHHHHHHHHhcCCceEEEec--CC--cccchhhHHhhh-------hccceecCCCCcceeeecccCHHH-HHHHHHHH Q lcl|Aclame:pro 274 RRLSDLSNTFKDSNELTYVLKN--YD--DQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVEN-SKKYLDEL 341 (492) Q Consensus 274 ~~~s~~~~~~~~~~~~~l~~~g--~~--~~~~~~~~~~~~-------~~~~~~~~~~~d~~~l~~~~~~~~-~~~~i~~l 341 (492) .+..-..+.+...+.|-.++.- .. .+..+.+...++ .++++.++++.+++.+........ +.+..+.. T Consensus 182 ~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~ 261 (385) T protein:vir:10 182 KASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYS 261 (385) T ss_pred HHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHH Confidence 6655555666666666655543 21 112222222221 223455555555544443322222 23455666 Q ss_pred HHHHHHHhCCCCCCccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCc Q lcl|Aclame:pro 342 YQKIMLFGQAVDFSSDK-FGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVA 420 (492) Q Consensus 342 ~~~i~~~a~~p~~~~~~-~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~ 420 (492) +..|+..-++|..-.+. .+++.++..++.........+.-....+...+.+- ++ ...+++.+..-+.. T Consensus 262 ~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~~l~P~~~~ie~~l~~~------l~-----~~~~~f~~~~ll~~ 330 (385) T protein:vir:10 262 ADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLANLNSYVNPIVDELRLK------MN-----APDLELDIKDMLDV 330 (385) T ss_pred HHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHh------hC-----CceEEeechhhhcc Confidence 77788877887654322 11222222221111111111111111111221111 11 12366666777788 Q ss_pred CHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 421 NTELQVQTAQQSM--GIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 421 d~~e~~~~~~k~~--g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) |..+.++++.++. |+++.-.+.+.++.-.=+...+.... ......+ +++++| T Consensus 331 d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~~-------------------~~~~~~~-~g~~~d 384 (385) T protein:vir:10 331 DDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFK-------------------PLTTQVK-GGDEGD 384 (385) T ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCcccc-------------------CcccccC-CCCCCC Confidence 9999999998874 78888777776542110000010000 0000111 111111 No 196 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=96.81 E-value=0.00032 Score=39.72 Aligned_cols=373 Identities=12% Similarity=0.049 Sum_probs=147.4 Q ss_pred hcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVR-YIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLK 93 (492) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~ 93 (492) |+ .+.+...++. ++.+...+ -..+-++... ....... ..- T Consensus 1 ~~-------------------------~~~~~~~~k~~~~~~~~~~---------~~~~~~~~~~---~~~~~~~--~v~ 41 (409) T protein:vir:96 1 MA-------------------------KENIVTRIKKKLIDNWIDQ---------SASKLYDFSP---WKNKSFW--GVI 41 (409) T ss_pred Cc-------------------------cccchhhhhhHHhhhhhcc---------cccccccccc---ccCcccc--ccc Confidence 00 1111111111 01110000 0000011000 0000000 000 Q ss_pred cccccccchHHHHHHHHHHhhhcCCeeecCCchhH-HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCC Q lcl|Aclame:pro 94 PDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEV-VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEG 167 (492) Q Consensus 94 ~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~-~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g 167 (492) .+.-+..+-....|+.++.-+..-|+.+--..+.. ......+.. | .-..+...++.+++.+|.||+++-++..| T Consensus 42 ~~~a~~~~~V~~ci~~ia~~ia~lp~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G 121 (409) T protein:vir:96 42 NNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH 121 (409) T ss_pred hhhHhhhHHHHHHHHHHHHhhhhCceEEeecccccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCC Confidence 00001122334455666655555566552222211 122233322 3 23455667788999999999999998888 Q ss_pred ce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCc Q lcl|Aclame:pro 168 EF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGK 246 (492) Q Consensus 168 ~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (492) ++ .+..++|..+-++.++.. +.+.+ ++ ....+... .+... T Consensus 122 ~~~~L~~l~~~~v~v~~~~~~-~~~~y--~~-~~~~g~~~-~~~~~---------------------------------- 162 (409) T protein:vir:96 122 QPSKLFLLNPDVVEMLIENQS-RELYY--SI-HAATGNKL-IVHNM---------------------------------- 162 (409) T ss_pred cEEEEEEEcCceeEEEEeCCC-cEEEE--EE-EcCCceEE-EEccc---------------------------------- Confidence 75 567788888877665421 11110 00 00001100 00000 Q ss_pred cceEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEE-ecC--CcccchhhHHhhh-----hcc Q lcl|Aclame:pro 247 IPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNEL-TYVL-KNY--DDQELPEFKRLLR-----YYG 312 (492) Q Consensus 247 iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~-~l~~-~g~--~~~~~~~~~~~~~-----~~~ 312 (492) -|++|++ ...|.|.+......++....+... .+..+..+ -+++ .+. +.+....+...+. .++ T Consensus 163 -evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~n~g~ 238 (409) T protein:vir:96 163 -DMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGG 238 (409) T ss_pred -cEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHH---HHHhcCCCceeEEecCCCCCHHHHHHHHHHHHHHhhcCCC Confidence 1233321 224677776666555543333211 12233332 2222 222 2222222222221 234 Q ss_pred ceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 AIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQE 392 (492) Q Consensus 313 ~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~ 392 (492) ++.++++-+++.+........+.+..+..+..|+..=++|..-.+...+ .+...++.. ....+..+|.- T Consensus 239 ~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~~~s~~e~~----------~~~f~~~~l~P 307 (409) T protein:vir:96 239 ILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN-TNFAKNEEL----------NRFYLQHTLLP 307 (409) T ss_pred eeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC-CCcccHHHH----------HHHHHHHHHHH Confidence 5555555555555443344445566666777888877888654432211 111111111 11111222222 Q ss_pred HHHHHHHHhc-----cCC--cceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHHHHHHHHHH Q lcl|Aclame:pro 393 LLWFVFEHFD-----IKG--EHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQAELERIEQE 461 (492) Q Consensus 393 ~~~li~~~~~-----~~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~E~~ri~~E 461 (492) ++..+...++ ... ....+++....-+-.|..+.++++.++. |+++.-.+++.++. +++-+.-+- T Consensus 308 ~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~~~----- 382 (409) T protein:vir:96 308 IVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLI----- 382 (409) T ss_pred HHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcceeee----- Confidence 2222222211 111 1123444445556678899999988874 78998888887753 221110000 Q ss_pred HHHHHHhhccccCCCCCCCCcCCCCCC--CCCC Q lcl|Aclame:pro 462 QTEYNKQLPNLDDGGADSAQQQERSNN--KESE 492 (492) Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e 492 (492) .....+.+ .. ...++...++ .++| T Consensus 383 ----~~n~~~~~--~~-~~~~~~~~gG~~n~~e 408 (409) T protein:vir:96 383 ----SGDLYPID--TP-LELRKSLKGGDKNVNE 408 (409) T ss_pred ----cccccccc--cc-hhhcccccCCCCCcCC Confidence 00000000 00 0001111111 1112 No 197 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=96.76 E-value=0.00036 Score=39.49 Aligned_cols=292 Identities=11% Similarity=-0.030 Sum_probs=125.3 Q ss_pred EEEEEEeCCCCceE---EEEEcccceE-EEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccccc Q lcl|Aclame:pro 157 EWLHPYLDEEGEFK---LFRVPAEQGI-PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNL 232 (492) Q Consensus 157 ~~~~v~~d~~g~~~---i~~~~p~~~~-~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (492) +++++|.-.+|... +.+.+|+... -.|++ ++.++. ++.........+.+ T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~--~~~l~~-~~~~~~~g~~~~~l------------------------ 53 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAP--DGGLVA-IEQWGVFGKATVRI------------------------ 53 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeecc--CCceeE-EEecCCCCCCccee------------------------ Confidence 88888876666544 3333433221 11221 111111 11100000000000 Q ss_pred ccccccceeccCCccceEee--cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccc--------- Q lcl|Aclame:pro 233 ENSKTHFSTGSWGKIPFIPF--KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQEL--------- 301 (492) Q Consensus 233 ~~~~~~~~~~~~g~iPvv~~--~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~--------- 301 (492) .+.+.+-.++- ..|+.|.|.+..+.-.---=...+.+.+.-++.|..|+.+.+|..+... T Consensus 54 ---------p~~kfi~~~~~~~~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~ 124 (355) T protein:vir:78 54 ---------PVDRLVVFVNEREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAE 124 (355) T ss_pred ---------ccCCEEEEEeCCCCCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHH Confidence 01111111111 2345678887765544434455667788888999888888776432110 Q ss_pred ---hhhH-------Hhhhhc--cceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccc---cccchhHH Q lcl|Aclame:pro 302 ---PEFK-------RLLRYY--GAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDK---FGSAPSGV 366 (492) Q Consensus 302 ---~~~~-------~~~~~~--~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~---~~~~~Sg~ 366 (492) .+.+ ..+..+ .+..++.+.++++++.......+..+++...+.|...--..-++.+. .|+...|. T Consensus 125 ~~~~~~~~~l~~~~~~i~~g~~a~~iip~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~~gGS~Alg~ 204 (355) T protein:vir:78 125 QWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGD 204 (355) T ss_pred HHHHHHHHHHHHHHHHhhCCcceeEeecCCceEEEeecCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhHHH Confidence 0111 111111 34457888899999877666667778888888876544322222221 12222222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHh--cc-CChH--- Q lcl|Aclame:pro 367 ALEFLYTNLNLKADKLARKAKVAIQ-ELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GI-VSHE--- 439 (492) Q Consensus 367 Al~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~-vs~e--- 439 (492) .-. .-....++.-.+.+...+. ++++-++.+- ......-..+.|.. .+.+....++.+.++. |+ ++.+ T Consensus 205 vh~---~v~~~~~~aD~~~i~~~ln~~li~~l~~lN-~~~~~~~P~~~~~~-~~~~~~~~a~~~~~l~~~G~~~~~~~~~ 279 (355) T protein:vir:78 205 TFA---SFFTGSLNAVMKHIADVTQQHVVEDLVDQN-WGPEEPAPRLVPAQ-LGKEQPVTAEAIRALVECGAFTADPELE 279 (355) T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCEEEecC-cChhHHHHHHHHHHHHhCCCccccHHHH Confidence 211 1223333444455556664 3565555432 22222234566754 4455666788887774 54 5543 Q ss_pred -HHHHhCCCCCCHH---HHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 440 -TVLENHPFVEDLQ---AELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 440 -t~l~~l~~v~D~~---~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .+.+.++. ..+. +++.- .++......... ...+....++.........+. T Consensus 280 ~~~~e~~gi-p~p~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~a~~~ 333 (355) T protein:vir:78 280 KDLRARYGL-PAPAERDDGADA-AAAKAAGRRRAK-RLPGQRQGAALPSRSPRADPP 333 (355) T ss_pred HHHHHHhCC-CCCCCCCcccCC-cccccccccccc-ccCCccccccccccCCCCCCh Confidence 44556653 2221 11110 111110000101 111111111111111111111 No 198 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=96.75 E-value=0.00036 Score=39.45 Aligned_cols=421 Identities=10% Similarity=0.061 Sum_probs=180.7 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCccccccccccccccccccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKL----PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMI 99 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~----~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~ 99 (492) +...++- .....++.+.+.++....++ .+.+.+.+|..-. .. +.. + ..+...|+. T Consensus 1 ~~~~~~~----------~~~~~~~~l~~r~~~L~~~R~~~e~~w~e~a~~~lP~--~~--~~~--~-----~~~~~~~~~ 59 (516) T protein:vir:96 1 MKQSIDL----------EYGGKRSKIPKLWEKFSNKRSSFLDRAKHYSKLTLPY--LM--NDK--G-----DNETSQNGW 59 (516) T ss_pred Ccchhhh----------hhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc--cc--CCC--C-----CccccCCcc Confidence 1111111 12223344555555444432 3334444444331 11 000 0 011222466 Q ss_pred cchHHHHHHHHHHhhhcC--C-----eeecCCch-------------hHHHHH--------HHHHhccHHHHHHHHHHHH Q lcl|Aclame:pro 100 TNFHANLVDQKVSYIVGK--P-----IAFKHTDD-------------EVVKRI--------DEVLGNRFDDKLHSVLTGA 151 (492) Q Consensus 100 ~n~~~~ivd~~~~~l~g~--~-----~~~~~~d~-------------~~~~~l--------~~~~~n~~~~~~~~~~~~~ 151 (492) .+-+...++.+++-|++- | ++++..+. ++.+.+ ..+..++|.....++.++. T Consensus 60 dstg~~a~~~LAa~l~~~ltpp~~~WF~L~~~~~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L 139 (516) T protein:vir:96 60 QGVGAQATNHLANKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHL 139 (516) T ss_pred cchHHHHHHHHHHHHHhhhcCCCCcccccccChhHHhhccccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH Confidence 677778888888777642 2 23332221 122322 1233468889999999999 Q ss_pred HhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeee----------------------ccceeEEEE Q lcl|Aclame:pro 152 SNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKL----------------------ENETKVEYW 209 (492) Q Consensus 152 ~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~----------------------~~~~~~~~~ 209 (492) ..+|.|.+ |.++++. ++.++-.+ |.+-.|. .+.+...++.... +....+++| T Consensus 140 ~~~G~a~l--~~d~~~~--~~~~pl~~-y~v~~d~-~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~v~ 213 (516) T protein:vir:96 140 IVAGSCML--YKPSKGA--ISAIPMHH-YVVNRDT-NGDLLDIILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVKLY 213 (516) T ss_pred HhHCeEeE--EecCCCC--EEEEEcCe-EEEeeCC-CCCeeeehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceEEE Confidence 99999865 4566665 44454444 4444433 3444444432210 011223333 Q ss_pred ecceEEEEEEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 210 DKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFK 284 (492) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~ 284 (492) +.... . ..+......... +.........+|..+|++.+. .+.+|+|-.+...+-+..++.+.-....... T Consensus 214 ~~v~~---~-~~~~~~~~~~~d-~~~~~~es~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~ 288 (516) T protein:vir:96 214 THAKY---L-GDGFWELKQSAD-DIPVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAA 288 (516) T ss_pred Eeeee---e-CCceeEEEEEeC-ceeeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHH Confidence 32110 0 011111111111 111111122334567776653 3467999999999999999988878888888 Q ss_pred hcCCceEEEecCCcccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccc Q lcl|Aclame:pro 285 DSNELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSA 362 (492) Q Consensus 285 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~ 362 (492) ....|.+.+.-.......... .... +.+..+..++++.+. +..+.......++.++..|...-....... ..+.. T Consensus 289 ~a~~~~~lv~p~g~~~~~~l~-~~~~-g~i~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~-r~~~r 365 (516) T protein:vir:96 289 LMADIKYLIRPGAQTDVDHFV-NSGT-GEVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMMETMTR-RDAER 365 (516) T ss_pred HhcCCccccCcccccchhhhc-cCCC-ceeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhhhhhcc-CCCcc Confidence 888877765321111111111 1111 233334445666653 334566677777777777744222111111 11233 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHH---H-- Q lcl|Aclame:pro 363 PSGVALEFLYTNLNLKADKLARKAKVAIQEL--------LWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQT---A-- 429 (492) Q Consensus 363 ~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~--------~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~---~-- 429 (492) .+|..+.. ++..+...++..+.++ +..++...+...-...+++.+.. +-+.+..++. + T Consensus 366 vTAtEV~~-------r~~E~~~~LGpv~~rl~~Ell~Pli~r~l~~~~p~lp~~~v~~~~vs--~l~~l~r~~~~~~i~~ 436 (516) T protein:vir:96 366 VTAVEIQR-------DALEIEQNMGGVYSLFATTMQSPVAMWGLLEAGESFTSDLVDPVIIT--GIEALGRMAELDKLAN 436 (516) T ss_pred ccHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccceeec--hHHHHHHHHHHHHHHH Confidence 55555544 3344455555555542 11122222211111223333322 2222222221 1 Q ss_pred -----HHHhcc-------CChHHHHH----hCCCCC----CHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 430 -----QQSMGI-------VSHETVLE----NHPFVE----DLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 430 -----~k~~g~-------vs~et~l~----~l~~v~----D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) ..++++ +....++. .++ |+ -.++|++++.+++++.++..+.....++... ...+++ T Consensus 437 ~~~~i~~~~~~~p~v~d~id~d~~~~~~a~~~G-vp~~~irs~eev~~~~~~~~~~q~~~~~a~~~~~~~~---~~~~~~ 512 (516) T protein:vir:96 437 FAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQIS-AELPFLKSAEEMAQEQEAQMQAQQAQMLEEGVAKAVP---GVIQQE 512 (516) T ss_pred HHHHHHHHhcCChhHHhcCCHHHHHHHHHHHhC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHhhcc Confidence 111111 11222222 222 21 1356666666555443333222211111110 111111 Q ss_pred CCC Q lcl|Aclame:pro 490 ESE 492 (492) Q Consensus 490 ~~e 492 (492) ..| T Consensus 513 ~~~ 515 (516) T protein:vir:96 513 LKE 515 (516) T ss_pred ccc Confidence 111 No 199 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=96.71 E-value=0.00039 Score=39.28 Aligned_cols=250 Identities=13% Similarity=0.016 Sum_probs=112.4 Q ss_pred hhcCCeeecCCchhHHH-HHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCC Q lcl|Aclame:pro 114 IVGKPIAFKHTDDEVVK-RIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDK 186 (492) Q Consensus 114 l~g~~~~~~~~d~~~~~-~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~ 186 (492) +..-|+.+...++.... ....+.. | ....+...+..+.+.+|.||+.+.++.+|.+ .+..++|..+.+..++. T Consensus 1 ia~l~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v~~~~~ 80 (278) T protein:vir:78 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (278) T ss_pred CccceeEEEecCcccccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEEEEcCC Confidence 22334433222221111 2222221 2 3456777888899999999999999988875 67778888887766542 Q ss_pred CCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCc Q lcl|Aclame:pro 187 EHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISD 261 (492) Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~ 261 (492) . ...+. .+....+..+ .+.. . -|+++++ ...|.|. T Consensus 81 ~--~~~~y--~~~~~~g~~~-~~~~---------------------------------~--evih~~~~~~~~~~~G~s~ 120 (278) T protein:vir:78 81 S--RELYY--SIHAATGNKL-IVHN---------------------------------M--DMLHFKHIVASNMVQGISP 120 (278) T ss_pred C--ceEEE--EEEcCCceEE-EEcc---------------------------------c--cEEEECCCCCCCCeeeccH Confidence 2 11110 0111111100 0000 0 1233332 1247777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec-C--CcccchhhHHhh-----hhccceecCCCCcceeeecccCHHH Q lcl|Aclame:pro 262 IFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN-Y--DDQELPEFKRLL-----RYYGAIKVSDNGGVDTIQVEVPVEN 333 (492) Q Consensus 262 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g-~--~~~~~~~~~~~~-----~~~~~~~~~~~~d~~~l~~~~~~~~ 333 (492) +......++....+... +.......|-.++.. . +++..+.++..+ ..++++.++++.+++.+........ T Consensus 121 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~ 198 (278) T protein:vir:78 121 IDVLKNTTDFDNAVRTF--NLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSED 198 (278) T ss_pred HHHHHHHHHHHHHHHHH--HHHHhcCCCcEEEEeCCCCCHHHHHHHHHHHHHHhccCCCceecCCCceEEEccCChhHHH Confidence 77666666654443322 222222233333332 1 122222222221 1234555666555555554444455 Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccccc-cchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCc Q lcl|Aclame:pro 334 SKKYLDELYQKIMLFGQAVDFSSDKFG-SAPS--GVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI----KGE 406 (492) Q Consensus 334 ~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~S--g~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~----~~~ 406 (492) +.+..+...+.|+..=++|..-.+... ++-| ..+.+ ..+..++.-+++.+...++. ..+ T Consensus 199 ~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~~~~~~--------------~~~~~~l~P~~~~i~~~ln~~L~~~~e 264 (278) T protein:vir:78 199 IVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNR--------------FYLQHTLLPIVKQYEEEFNRKLLTKTD 264 (278) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcCChhH Confidence 667777788888888788864433221 1211 11121 12222233333333322221 111 Q ss_pred -ceeeeEEeCCCCC Q lcl|Aclame:pro 407 -HKDVDISFNYNKV 419 (492) Q Consensus 407 -~~~i~i~f~~~~p 419 (492) .....+.|+-+.- T Consensus 265 ~~~g~~~~f~~~~l 278 (278) T protein:vir:78 265 REKIGILNLTLNLI 278 (278) T ss_pred hcCCceEEEecccC Confidence 1223455543333 No 200 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=96.64 E-value=0.00045 Score=38.95 Aligned_cols=379 Identities=12% Similarity=0.056 Sum_probs=154.1 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cccc--------ccccccccc- Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE--PKPV--------DATGAVDPL- 92 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~--~~~~--------~~~~~~~~~- 92 (492) ++ +...+ ....+....+....++... .... .+....... T Consensus 1 ~~-------------~~~~m-----------------g~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 50 (432) T protein:vir:81 1 MP-------------DEKKL-----------------GLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGA 50 (432) T ss_pred CC-------------chhhc-----------------chhhhhhhhcccccccccccccccccCccchhhhcccccccCc Confidence 11 11111 1111111222111110000 0000 000000000 Q ss_pred --ccccccccchHHHHHHHHHHhhhcCCeee--cCCch---h-HHHHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 93 --KPDDRMITNFHANLVDQKVSYIVGKPIAF--KHTDD---E-VVKRIDEVLG--NR---FDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 93 --~~~~ri~~n~~~~ivd~~~~~l~g~~~~~--~~~d~---~-~~~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~ 159 (492) -++.-+.++-.-.+|+..++-+..-|+.+ ...+. . .......+.. |. -..+...+..+++.+|.||+ T Consensus 51 ~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv 130 (432) T protein:vir:81 51 AVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYV 130 (432) T ss_pred ccchHhhhccHHHHHHHHHHHHhhhhCceeeEEecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEE Confidence 00000111222335666666666667654 11111 0 1112222322 32 23566777888999999999 Q ss_pred EEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccccccccccc Q lcl|Aclame:pro 160 HPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTH 238 (492) Q Consensus 160 ~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (492) .+..+ +|++ .+..++|..+.+..++. +.+.+ ++ ...++..++ +.... T Consensus 131 ~i~~~-~g~~~~L~~l~~~~v~v~~~~~--g~~~y--~~-~~~~g~~~~-~~~~~------------------------- 178 (432) T protein:vir:81 131 RKVVT-DGRIESLQYLANDRLTITTDPK--GNTAY--RY-RRTDGQMID-IPKQQ------------------------- 178 (432) T ss_pred EEEec-CCcEEEEEEEcCCceEEEECCC--CcEEE--EE-EecCceEEE-Ecccc------------------------- Confidence 98776 4665 56778888888777642 22221 11 111111110 11111 Q ss_pred ceeccCCccceEeec----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec--C-CcccchhhHHhh--- Q lcl|Aclame:pro 239 FSTGSWGKIPFIPFK----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN--Y-DDQELPEFKRLL--- 308 (492) Q Consensus 239 ~~~~~~g~iPvv~~~----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g--~-~~~~~~~~~~~~--- 308 (492) |++++ +...|.|.+......++....+..-..+.+...+.|-.++.- . +.+..+.++... T Consensus 179 ----------iih~r~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~ 248 (432) T protein:vir:81 179 ----------IWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYDSFAKKVSGS 248 (432) T ss_pred ----------EEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHHHHHHHHhhh Confidence 11221 122466767666655555444444444445545555444432 1 122222233322 Q ss_pred -hhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc--cchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 -RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG--SAPSGVALEFLYTNLNLKADKLARK 385 (492) Q Consensus 309 -~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~--~~~Sg~Al~~~~~~l~~k~~~~~~~ 385 (492) ..++++.++++.+.+.++.......+.+..+..+..|+..-++|..-.+... +...|..++-....+. T Consensus 249 ~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~~f~--------- 319 (432) T protein:vir:81 249 VEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFL--------- 319 (432) T ss_pred hcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHHHHH--------- Confidence 2345666776666665554444455556677777888888888865443221 1222222322211111 Q ss_pred HHHHHHHHHHHHHHHhc----cCCc--ceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHH Q lcl|Aclame:pro 386 AKVAIQELLWFVFEHFD----IKGE--HKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAEL 455 (492) Q Consensus 386 ~~~~l~~~~~li~~~~~----~~~~--~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~ 455 (492) ..+|.-.+..+...++ ...+ ...+++.+..-+..|..+.++++.++ .|+++.-.++++++. +++- ..+ T Consensus 320 -~~tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g~-~~~ 397 (432) T protein:vir:81 320 -TMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGN-AAV 397 (432) T ss_pred -HHHHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC-cce Confidence 1122222222211111 1111 12344444555777999999998877 478999888888753 2210 000 Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCC-cCCC----CCCCCCC Q lcl|Aclame:pro 456 ERIEQEQTEYNKQLPNLDDGGADSAQ-QQER----SNNKESE 492 (492) Q Consensus 456 ~ri~~E~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~e 492 (492) -.+. ....+....+..... +... .+++-++ T Consensus 398 ~~~~-------~~~~pl~~~~~~~~~~~~~~~~n~~~~~~~~ 432 (432) T protein:vir:81 398 LTVQ-------SAMVPLDSIGLQASPEPASGLGNQQQDKVSK 432 (432) T ss_pred Eeec-------CcccchhhhccCCCCCCCCCCCCcccccccC Confidence 0000 000000111111000 0000 1111111 No 201 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=96.64 E-value=0.00045 Score=38.95 Aligned_cols=361 Identities=11% Similarity=0.049 Sum_probs=145.2 Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHhcC-CCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEI-SIGQEYYEQ-RPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIA 120 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~-~~~~~YY~G-~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~ 120 (492) +.+ .+......... .....+..- ...+.. ........ ....-+.++-...+|+..++-+.+-|++ T Consensus 1 M~~-------f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v---~~~~~~~~~~v~~~i~~ia~~ia~~p~~ 67 (386) T protein:vir:48 1 MPI-------FNITNLATESPPISQGGFFDITDPDFLS---TLNGSEWV---SAESALRNSDLFSIINQLSNDLATVKLT 67 (386) T ss_pred Ccc-------cccccccccccccccccccccccchhcc---cccCCcee---chhhhhcchHHHHHHHHHHHhhccCcee Confidence 110 00000000000 000000000 000000 00000000 0000011122234555555555555655 Q ss_pred ecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEee Q lcl|Aclame:pro 121 FKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMY 198 (492) Q Consensus 121 ~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 198 (492) +. +.....++..-+. .....+...+..+.+.+|.+|+.+-++..|.+ .+..++|..+.+..++.. +.+.+ ++ T Consensus 68 ~~--~~~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~-~~~~y--~~- 141 (386) T protein:vir:48 68 AS--RKQLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNK-DGIYY--NI- 141 (386) T ss_pred ec--cchhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCC-ceEEE--EE- Confidence 43 2222222222211 13446677788899999999999999988875 567788888876654321 11110 00 Q ss_pred eeccce--eEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCc-----cCCCCcHHHHHHHHHH Q lcl|Aclame:pro 199 KLENET--KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDA 271 (492) Q Consensus 199 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn-----~~~~s~~~~v~~liD~ 271 (492) ...... ....+.. . -|+++++. ..|.|.+......+.. T Consensus 142 ~~~~~~~~~~~~~~~---------------------------------~--evih~~~~~~~~~~~G~s~i~~~~~~i~~ 186 (386) T protein:vir:48 142 TFDDPRIPPKQHVPQ---------------------------------G--DVLHFKLLSVDGGLTSVSPLMALSRELNI 186 (386) T ss_pred EecCccccceeEecC---------------------------------c--cEEEecCCCCCCceeeccHHHHHHHHHHH Confidence 000000 0000000 0 12333321 2477877776666666 Q ss_pred HHHHHHHHHHHHHhcCCceEEEecCCccc---chhhHHhh-----hhccceecCCCCcceeeecccCHHHHHHHHHHHHH Q lcl|Aclame:pro 272 YNRRLSDLSNTFKDSNELTYVLKNYDDQE---LPEFKRLL-----RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQ 343 (492) Q Consensus 272 ~~~~~s~~~~~~~~~~~~~l~~~g~~~~~---~~~~~~~~-----~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~ 343 (492) ...+..-....+...+.|-.++.-..... ..++.... ..++++.++++.+++.+........+.+..+..+. T Consensus 187 ~~~~~~~~~~~~~ng~~~~~ii~~~~~~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~ 266 (386) T protein:vir:48 187 QKASDKLTLNSLKNALNANGILKIKGGGLLDFKTKLSRSRQAMKQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTG 266 (386) T ss_pred HHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHhhcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHH Confidence 55555555555666666666655322211 11121111 12234445555454444433333445666777778 Q ss_pred HHHHHhCCCCCCcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcC Q lcl|Aclame:pro 344 KIMLFGQAVDFSSDKFGS--APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVAN 421 (492) Q Consensus 344 ~i~~~a~~p~~~~~~~~~--~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d 421 (492) .|+..=++|..-.+..++ +.....+.+....+.-.+...+..+...| .. .+++.+...+-.+ T Consensus 267 ~Ia~~fgVPp~~lg~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l-----------~~-----~~~~~~~~~~~~d 330 (386) T protein:vir:48 267 QFAKVYGIPENVVGGQGDQQSSLEMSLDLYNKAVSRYLRPFLSELSQKL-----------SC-----DVDADILPAVDPT 330 (386) T ss_pred HHHHHhCCCHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------cc-----hhhcchhhhhccC Confidence 888877887654432222 22222222222222222222222222111 11 1122222223345 Q ss_pred HHHHHHHHHHH--hccCChHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 422 TELQVQTAQQS--MGIVSHETVLENHP--FVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 422 ~~e~~~~~~k~--~g~vs~et~l~~l~--~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ....+..+.++ +|+++.-.+++.++ .+.. .++.+. .........+ .+++++| T Consensus 331 ~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~~~~--~~~~~~--------~~~~~~~~~g---------Gd~~~~~ 386 (386) T protein:vir:48 331 GSNSVSRINSMVKSGTLAQNQGLYILQQAEILP--KELPEG--------ENPNKTTLKG---------GEINGED 386 (386) T ss_pred hHHHHHHHHHHHhCCCcCHHHHHHHhhcCCCCC--ccchhh--------cCCCCCccCC---------CCCCCCC Confidence 55566666665 47888888877653 2221 111111 0000001111 1111111 No 202 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=96.57 E-value=0.0005 Score=38.67 Aligned_cols=383 Identities=10% Similarity=-0.007 Sum_probs=155.9 Q ss_pred eeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccc Q lcl|Aclame:pro 20 ILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMI 99 (492) Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~ 99 (492) -.|-... .-.-++....++..+.++.....+.......+..+.. . ....... -+++-+. T Consensus 1 ~~~~~~~-----------~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~v---s~~~al~ 59 (424) T protein:vir:45 1 MLYCWWA-----------HWLWPEGGRVLLDALFRSKSLENPSTPITGDAVDTDG--L-----FRADVYV---SPETAMK 59 (424) T ss_pred CeeEeee-----------ceecCcchhHHHHhhccccCCCCCccccchhhhhhhc--c-----ccCCcee---chHHhhc Confidence 1111000 0000122222222222110000000000000000000 0 0000000 0000011 Q ss_pred cchHHHHHHHHHHhhhcCCeeecC-Cc---hhH--HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCc Q lcl|Aclame:pro 100 TNFHANLVDQKVSYIVGKPIAFKH-TD---DEV--VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGE 168 (492) Q Consensus 100 ~n~~~~ivd~~~~~l~g~~~~~~~-~d---~~~--~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~ 168 (492) +.=.-..|+.+++-+.+-|+++-- ++ +.. ......+.. | ....+...+..+++.+|.+|+.+-++..|+ T Consensus 60 ~~~v~~cv~~Ia~~iA~lp~~v~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~ 139 (424) T protein:vir:45 60 LAAVYSCIYVLSSSLAQMPLHVMRRHKGKVEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGE 139 (424) T ss_pred cHHHHHHHHHHHHHHhhCceEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCc Confidence 112334566666666666776521 11 111 112222322 3 223456667888999999999999988888 Q ss_pred e-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCcc Q lcl|Aclame:pro 169 F-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKI 247 (492) Q Consensus 169 ~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 247 (492) + .+..++|..+.+..+. +.+.+. + ....+ ...+.+. T Consensus 140 ~~~L~~l~~~~v~i~~~~---~~~~y~--~-~~~~~--~~~~~~~----------------------------------- 176 (424) T protein:vir:45 140 VISLDCCMPWETTLMNTG---GRYTYG--L-YNEYG--AFAISPD----------------------------------- 176 (424) T ss_pred EEEEEEecCceEEEEEcC---CeEEEE--E-EecCc--eEEECcc----------------------------------- Confidence 6 4777788777554321 111110 0 00000 0000000 Q ss_pred ceEeec----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh---------hc Q lcl|Aclame:pro 248 PFIPFK----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR---------YY 311 (492) Q Consensus 248 Pvv~~~----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~---------~~ 311 (492) -|++++ +...|.|.++.....++....+..-..+.+...+.|-.++.-. +.+..+.++..+. .+ T Consensus 177 eVih~r~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~~n~g 256 (424) T protein:vir:45 177 DMIHIRALGNNQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGLNKESWGWLKDQWQKASQALRRQEN 256 (424) T ss_pred cEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhccccccCC Confidence 122222 1234777777666666554444444445556666666665532 2222222222211 22 Q ss_pred cceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 GAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAI 390 (492) Q Consensus 312 ~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l 390 (492) +++.++++.+++.++.......+.+..+..+..|+..=++|..-.+... ++-|+ ++. .........| T Consensus 257 ~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn--~eq----------~~~~f~~~tL 324 (424) T protein:vir:45 257 KTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSN--ISA----------QAIQFVRYTM 324 (424) T ss_pred ceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc--HHH----------HHHHHHHHHH Confidence 4555565555555543333334555666677778777778765443221 11111 111 1111222222 Q ss_pred HHHHHHHHHHhcc-----CC--cceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHHHHHHHH Q lcl|Aclame:pro 391 QELLWFVFEHFDI-----KG--EHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFV--EDLQAELERIE 459 (492) Q Consensus 391 ~~~~~li~~~~~~-----~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v--~D~~~E~~ri~ 459 (492) .-.++.+...++. .. ....+++....-+-.|..+.++.+.++. |+++...+.++++.- ++-+.- T Consensus 325 ~P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~----- 399 (424) T protein:vir:45 325 MPWVTNWEQELNRRLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEM----- 399 (424) T ss_pred HHHHHHHHHHHHHhcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee----- Confidence 2222222222111 11 1123455555666678999999988875 789988888877542 211100 Q ss_pred HHHHHHHHhhccccCCC-CCCCCcCCCCCCCCCC Q lcl|Aclame:pro 460 QEQTEYNKQLPNLDDGG-ADSAQQQERSNNKESE 492 (492) Q Consensus 460 ~E~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e 492 (492) ..+..... .+...+...++++++| T Consensus 400 ---------~~~~n~~~~~~~~~~~~~~~~~~~~ 424 (424) T protein:vir:45 400 ---------LVSVNAANPAGDFKPPKNDEGKTNE 424 (424) T ss_pred ---------eecccccccccccCCCCCCCCCCCC Confidence 00111111 1111122222222333 No 203 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=96.55 E-value=0.00052 Score=38.58 Aligned_cols=354 Identities=10% Similarity=0.030 Sum_probs=147.6 Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKL-PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 121 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~-~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 121 (492) +. ++.++........ .....+...+-+- .......... .-+..+-...+|+..++-+.+-|+++ T Consensus 1 Mg---~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~---~~l~~~~v~~~i~~ia~~ia~~~~~~ 65 (382) T protein:vir:48 1 MP---IFNLATESPPDNQGGFFDVVDSDFLAS---------LKGNEWVSAE---TALRNSDLFSIINQLSNDLATVKLIT 65 (382) T ss_pred Cc---cccccccCCcccccccccchhhhcccc---------ccCCcccchH---hhhccHHHHHHHHHHHHhhccCceee Confidence 11 1111111000000 0000000000000 0000000000 00111223345666666666666655 Q ss_pred cCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeee Q lcl|Aclame:pro 122 KHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYK 199 (492) Q Consensus 122 ~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~ 199 (492) .... ...++..=+. .....+...+..+++.+|.||+++-++.+|++ .+..++|..+.++.++.. +.+.+ ++ . T Consensus 66 ~~~~--~~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~-~~~~y--~~-~ 139 (382) T protein:vir:48 66 SRKK--LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNK-DGIYY--NI-T 139 (382) T ss_pred ecch--hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCC-CeEEE--EE-E Confidence 4322 2222222111 13456777788899999999999999988876 678888988877665321 11111 00 0 Q ss_pred eccce--eEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHH Q lcl|Aclame:pro 200 LENET--KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAY 272 (492) Q Consensus 200 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~ 272 (492) ..... ....+. .. -|++++. ...|.|.+......++.. T Consensus 140 ~~~~~~~~~~~~~---------------------------------~~--evih~~~~~~~~~~~G~s~l~~~~~~i~~~ 184 (382) T protein:vir:48 140 FDDPRIPPKQHVP---------------------------------QN--DVLHFRLLSVDGGMTSVSPLMALSRELDIQ 184 (382) T ss_pred ecCccccceeEEc---------------------------------Cc--cEEEecCCCCCCccccccHHHHHHHHHHHH Confidence 00000 000000 01 1333321 135778787777777666 Q ss_pred HHHHHHHHHHHHhcCCceEEEecCCc---ccchhhHHhh-----hhccceecCCCCcceeeecccCHHHHHHHHHHHHHH Q lcl|Aclame:pro 273 NRRLSDLSNTFKDSNELTYVLKNYDD---QELPEFKRLL-----RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQK 344 (492) Q Consensus 273 ~~~~s~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~~~-----~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~ 344 (492) ..+..-..+.+...+.|-.+++-... +...++.... ..++++.++++.+++.+........+.+..+..++. T Consensus 185 ~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~ 264 (382) T protein:vir:48 185 KASGNLTINSLKNALNANGILKIKGGGLLDFKTKLSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQ 264 (382) T ss_pred HHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHHHHhhccCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHH Confidence 66656666667777777666543221 2212221111 123455566655555554444445556777778888 Q ss_pred HHHHhCCCCCCccccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcceeeeEEeCCCCC Q lcl|Aclame:pro 345 IMLFGQAVDFSSDKFGSAPS-GVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKGEHKDVDISFNYNKV 419 (492) Q Consensus 345 i~~~a~~p~~~~~~~~~~~S-g~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~~~~~i~i~f~~~~p 419 (492) |+..=++|..-.+..+++.+ ..+.+. .+..+|.-+++.+...+. ...+ .++...+. T Consensus 265 Ia~afgVp~~~lg~~~~~~~~~~~~~~--------------~~~~~l~p~~~~i~~~l~~~l~~~~~-~~~~~~~~---- 325 (382) T protein:vir:48 265 FAKVYGIPDNVVGGQGDQQSSLEMSSD--------------LYSKAVSRYLRPFLSELSQKLSCDVD-ADIFPAVD---- 325 (382) T ss_pred HHHHhCCCHHHhCCCCCcccHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhcChhh-hhhhhhhc---- Confidence 88887888655433222221 222211 112222222222211111 1101 01101111 Q ss_pred cCHHHHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 420 ANTELQVQTAQQS--MGIVSHETVLENH---PFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 420 ~d~~e~~~~~~k~--~g~vs~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .+.......+.++ +|++++-.+++.+ ++..+. +.+. + ...... .+|.+ ++++ T Consensus 326 ~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~~~---~~~~--~-----~~~~~~-~GGd~----------~~~~ 382 (382) T protein:vir:48 326 PTGSNYISRINSLVKTGTLAQNQGLYILQQAEILPKE---LPNG--E-----NPNSTL-KGGEE----------DGQD 382 (382) T ss_pred cchhHHHHHHHHHhhcCccCHHHHHHHHhhCCCCCcc---hhhh--h-----cCCCCC-CCCCC----------CCCC Confidence 1223334444444 4788887777654 444321 1110 0 000111 11111 1111 No 204 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=96.52 E-value=0.00054 Score=38.48 Aligned_cols=378 Identities=8% Similarity=0.007 Sum_probs=164.7 Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc--c-cccccc-cccc--cccchHHHHHHHHHH Q lcl|Aclame:pro 39 NNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDAT--G-AVDPLK-PDDR--MITNFHANLVDQKVS 112 (492) Q Consensus 39 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~--~-~~~~~~-~~~r--i~~n~~~~ivd~~~~ 112 (492) -.+|+.+.++ ..+.....+++.++.|....-......... . ...... .+.+ +.+.-...+|+.+++ T Consensus 1 ~~~~~~~~~~--------~~~~g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~ 72 (424) T protein:vir:18 1 MEEPKYTIDL--------RTNNGWWARLKSWFVGGRLVTPNQGSQTGPVSAHGYLGDSSINDERILQISTVWRCVSLIST 72 (424) T ss_pred CCCCcccccc--------CCCCchHHHHHhhccccccccccchhhccccccccccccccccHHHhhccHHHHHHHHHHHH Confidence 1112222111 234445555666776653211000000000 0 000000 0000 111223346677777 Q ss_pred hhhcCCeeec--CCch---h---HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccc Q lcl|Aclame:pro 113 YIVGKPIAFK--HTDD---E---VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQ 178 (492) Q Consensus 113 ~l~g~~~~~~--~~d~---~---~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~ 178 (492) -+.+-|+.+- ..+. . .......+.. | .-..+...+..+.+.+|.||+++-++..|++ .+..++|.. T Consensus 73 ~iA~lp~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~ 152 (424) T protein:vir:18 73 LTACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSAN 152 (424) T ss_pred hhccCceEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcc Confidence 6666676651 1111 1 1112233332 2 2345666778899999999999999888875 567778887 Q ss_pred eEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC---- Q lcl|Aclame:pro 179 GIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN---- 254 (492) Q Consensus 179 ~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n---- 254 (492) +.+..+. +.+.+ + |.. ++... .+.... |+++++ T Consensus 153 v~v~~~~---~~~~y--~-~~~-~g~~~-~~~~~e-----------------------------------Vihir~~~~d 189 (424) T protein:vir:18 153 MDVKLVG---KKVVY--R-YQR-DSEYA-DFSQKE-----------------------------------IFHLKGFGFT 189 (424) T ss_pred eEEEEcC---CeEEE--E-EEe-CCeEE-Eecccc-----------------------------------EEEecCcCCC Confidence 7664432 11111 1 111 11100 111111 222221 Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC----cccchhhHHhhh-------hccceecCCCCcce Q lcl|Aclame:pro 255 NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD----DQELPEFKRLLR-------YYGAIKVSDNGGVD 323 (492) Q Consensus 255 n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~----~~~~~~~~~~~~-------~~~~~~~~~~~d~~ 323 (492) ...|.|.+......++....+..-..+.+...+.|-.++.-.. .+....++..++ .++++.++++.+.+ T Consensus 190 g~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~~nag~~~vl~~g~~~~ 269 (424) T protein:vir:18 190 GLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTS 269 (424) T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCCHHHHHHHHHHHHHHhCCcccCCceeccCCceEE Confidence 2246666665555554444444444445555566655554322 222122222211 23455566555555 Q ss_pred eeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 324 TIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD 402 (492) Q Consensus 324 ~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 402 (492) .+........+.+..+..+..|+..=++|..-.+... ++..|..++-....+ +..+|.-.++.+...++ T Consensus 270 ~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f----------~~~tl~P~~~~ie~~ln 339 (424) T protein:vir:18 270 AIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGF----------LQYTLQPYISRWENSIQ 339 (424) T ss_pred ecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHH----------HHHHHHHHHHHHHHHHH Confidence 5544334445566667777788888788865443222 222222333222211 12222222222222111 Q ss_pred c----CC--cceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 403 I----KG--EHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNL 472 (492) Q Consensus 403 ~----~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~ 472 (492) . .. ....+++.+..-+..|..+.++.+.++ .|+++.-.++++++.- ++-+.-+ ......+. T Consensus 340 ~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~---------~~~n~~~l 410 (424) T protein:vir:18 340 RWLIPSKDVGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGGDVAM---------RQAQYVPI 410 (424) T ss_pred hhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeee---------eccCccch Confidence 1 11 123355556677788999999998887 4789998888877532 1100000 00000011 Q ss_pred cCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 473 DDGGADSAQQQERSNNK 489 (492) Q Consensus 473 ~~~~~~~~~~~~~~~~~ 489 (492) ...+.+ .+.+.+++ T Consensus 411 ~~~~~~---~~~~~n~a 424 (424) T protein:vir:18 411 TDLGTN---KEPRNNGA 424 (424) T ss_pred hhhhcc---CCccccCC Confidence 000111 11111111 No 205 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=96.52 E-value=0.00055 Score=38.45 Aligned_cols=383 Identities=12% Similarity=0.053 Sum_probs=156.2 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cccccc--------cccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIV--KEPKPV--------DATGAVDPLK 93 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~--~~~~~~--------~~~~~~~~~~ 93 (492) +.|. -. ...+.+++..+....+.- ...... .......... T Consensus 1 ~~~~-------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 50 (432) T protein:vir:10 1 MPDE-------------KK-----------------LGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGA 50 (432) T ss_pred CCCC-------------cc-----------------cchhhhhHhhcCCccccccccccccccCcchhhhhcccccccCc Confidence 1110 00 111122222222211100 000000 0000000000 Q ss_pred ---cccccccchHHHHHHHHHHhhhcCCeeec--CCch---hH-HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 94 ---PDDRMITNFHANLVDQKVSYIVGKPIAFK--HTDD---EV-VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 94 ---~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~d~---~~-~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~ 159 (492) ++.=+.+.-.-..|+..++-+.+-|+.+- ..+. .. ...+..+.. | ....+...+..+++.+|.||+ T Consensus 51 ~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~ 130 (432) T protein:vir:10 51 AVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYV 130 (432) T ss_pred ccchhhhhcchHHHHHHHHHHHhhhhCceeEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEE Confidence 00001123334456666666666676541 1111 11 112333322 3 234566677889999999999 Q ss_pred EEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccccccccccc Q lcl|Aclame:pro 160 HPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTH 238 (492) Q Consensus 160 ~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (492) .+..+ +|++ .+..++|..+.++.+.. +.+.+ + +...++..++ +.... T Consensus 131 ~~~~~-~g~~~~L~~l~~~~v~v~~~~~--g~~~y--~-~~~~~g~~~~-~~~~~------------------------- 178 (432) T protein:vir:10 131 RKVVT-DGRIESLQYLANDRLTITTDTK--GNTAY--R-YRRTDGQMID-IPKQQ------------------------- 178 (432) T ss_pred EEEec-CCcEEEEEEEcCCceEEEEcCC--CcEEE--E-EEecCceEEE-EcCcc------------------------- Confidence 98776 4664 56778898888876642 22221 1 1111111110 00111 Q ss_pred ceeccCCccceEeec----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC---cccchhhHHhh--- Q lcl|Aclame:pro 239 FSTGSWGKIPFIPFK----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD---DQELPEFKRLL--- 308 (492) Q Consensus 239 ~~~~~~g~iPvv~~~----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~--- 308 (492) |++++ +...|.|.+......++.......-..+.+...+.|-.++.... .+..+.+.+.. T Consensus 179 ----------iih~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~ 248 (432) T protein:vir:10 179 ----------IWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYDSFAKKVSGS 248 (432) T ss_pred ----------EEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHHHHHHHHhhh Confidence 11111 12246676666555555444443334444555556666655322 22222233222 Q ss_pred -hhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc--cchhHHHHHHHHHHHHH-HHHHHHH Q lcl|Aclame:pro 309 -RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG--SAPSGVALEFLYTNLNL-KADKLAR 384 (492) Q Consensus 309 -~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~--~~~Sg~Al~~~~~~l~~-k~~~~~~ 384 (492) ..++++.++++.+.+.++.......+.+..+..+..|+..-++|..-.+... +...+..++.....+.. .+.-... T Consensus 249 ~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~~f~~~tl~P~~~ 328 (432) T protein:vir:10 249 VEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFLSMTLSPWLR 328 (432) T ss_pred hhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHHHHHHHHHHHHHH Confidence 2345666666666555544434445556667777888888888875543221 12222223222111111 1111111 Q ss_pred HHHHHHHHHHHHHHHHhccC-CcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHH Q lcl|Aclame:pro 385 KAKVAIQELLWFVFEHFDIK-GEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIE 459 (492) Q Consensus 385 ~~~~~l~~~~~li~~~~~~~-~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~ 459 (492) .+...+.+ . ++... .....+++.....+..|..+.++.+.++ .|+++.-.++++++. +++-. .+-.+. T Consensus 329 ~ie~~ln~---k---L~~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~-~~~~~~ 401 (432) T protein:vir:10 329 RIEQSIAL---N---LLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNA-AVLTVQ 401 (432) T ss_pred HHHHHHHh---h---hcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCc-ceEeec Confidence 11111111 0 11111 1112334444455667899999998887 478999888887753 22110 000000 Q ss_pred HHHHHHHHhhccccCCCCCCCCc-CCCCCCCCCC Q lcl|Aclame:pro 460 QEQTEYNKQLPNLDDGGADSAQQ-QERSNNKESE 492 (492) Q Consensus 460 ~E~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e 492 (492) ....+....+.....+ ....++++++ T Consensus 402 -------~~~~pl~~~~~~~~~~~~~~~~~~~~~ 428 (432) T protein:vir:10 402 -------SAMVPLDSIGLQASPEPASGLGNQQQD 428 (432) T ss_pred -------CcccchhhhcccCCCCCCCCCCCcccc Confidence 0000111111111111 0111111111 No 206 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=96.43 E-value=0.00063 Score=38.13 Aligned_cols=365 Identities=11% Similarity=0.029 Sum_probs=142.8 Q ss_pred HHHhcCCCc-----cccccc-----cccccccccccccccccccchHHHHHHHHHHhhhcCCeeec-CC-chhH-HHHHH Q lcl|Aclame:pro 67 QEYYEQRPD-----IVKEPK-----PVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK-HT-DDEV-VKRID 133 (492) Q Consensus 67 ~~YY~G~~~-----i~~~~~-----~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~-~~-d~~~-~~~l~ 133 (492) .++|++... ++.... ...... .....+ .|+.. .-.+|+.+++-+..-|+.+- .. +... ...+. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~A-l~~~~--V~~cv~~ia~~iA~lp~~~~~~~~~~~~~~~~~~ 76 (417) T protein:vir:38 1 MKLFRGLATEVDPHWADHLLDSGVIPSFRGG-YLGISA-LRNSD--VLTAVSIVSGDVSRFPLVITDSSTDEVIDLANIE 76 (417) T ss_pred CccccccccCCCccchhhhcccccccccCCc-eechhh-cccHH--HHHHHHHHHHhhccCeeEEEEcCCcceeccchHH Confidence 222333221 111000 000000 000000 11111 12356666666666676652 11 1111 11111 Q ss_pred -HHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCc-eE-EEEEcccceEEEecCCCCCceEEEEEeeeecccee Q lcl|Aclame:pro 134 -EVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGE-FK-LFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETK 205 (492) Q Consensus 134 -~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~-~~-i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~ 205 (492) .+.. | ....+...+...++.+|.||+.+.++..|. +. +..++|..+.+..++. +.+.+ .+...+... T Consensus 77 ~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~--~~~~y---~~~~~~~~~ 151 (417) T protein:vir:38 77 YLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDP--DNIIY---RFTPYNSSM 151 (417) T ss_pred HHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCC--CeEEE---EEEEcCCcE Confidence 1222 3 234566667888999999999999887543 43 5567888886654422 12211 111111111 Q ss_pred EEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC----ccCCCCcHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 206 VEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----NDLEISDIFMYKTLIDAYNRRLSDLSN 281 (492) Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n~~~~s~~~~v~~liD~~~~~~s~~~~ 281 (492) ..++.... |++|+. ...|.|.+......+.....+..-..+ T Consensus 152 ~~~~~~~d-----------------------------------viH~r~~~~d~~~G~s~l~~~~~~i~~~~~~~~~~~~ 196 (417) T protein:vir:38 152 QKVCGFED-----------------------------------VIHWKFFSYDTIMGRSPLLSLGDEIGLQESGVSTLQK 196 (417) T ss_pred EEEecCcc-----------------------------------eEEecCCCCCCccccCHHHHHHHHHHHHHHHHHHHHH Confidence 11111111 122221 124777776666666554544444455 Q ss_pred HHHhcCCceEEEecC---CcccchhhHHhh-------hhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 282 TFKDSNELTYVLKNY---DDQELPEFKRLL-------RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQA 351 (492) Q Consensus 282 ~~~~~~~~~l~~~g~---~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~ 351 (492) .+...+.|-.++.-. +.+..+.++..+ ..++++.++++.+.+.++.......+.+..+..+..|+..=++ T Consensus 197 ~f~ng~~p~~il~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgV 276 (417) T protein:vir:38 197 FFKSGLKGSIIKAKESRLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRV 276 (417) T ss_pred HHhccCCCcEEEEeCCCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCC Confidence 555555565554422 222222222222 1233455555544444433322333444555556667766677 Q ss_pred CCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcceeeeEEeCCCCCcCHHHHHH Q lcl|Aclame:pro 352 VDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKGEHKDVDISFNYNKVANTELQVQ 427 (492) Q Consensus 352 p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~~~~~i~i~f~~~~p~d~~e~~~ 427 (492) |..-.+..++..+...+. ...+...|.-.++.+...++ ...+.....+.|.... .+.+..++ T Consensus 277 Pp~~lg~~~~~s~~e~~~-------------~~~~~~tl~P~~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~-l~~~~~~~ 342 (417) T protein:vir:38 277 PAYRLAQNSPNQSVKQLA-------------DDYIRNDLPFYFEPITSEFELKLLDDAQRHQYCIGFDTKS-VNGLPIAD 342 (417) T ss_pred CHHHhCCCCcchhHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhhcChhhcccceEEechhh-hhHHHHHH Confidence 755443222222211111 11222233333333322211 1112223456664221 12222222 Q ss_pred HHHHH--hccCChHHHHHhCCC--CCCHHH-H------HHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 428 TAQQS--MGIVSHETVLENHPF--VEDLQA-E------LERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 428 ~~~k~--~g~vs~et~l~~l~~--v~D~~~-E------~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +.++ .|+++.-.+.++++. +++... + .-.+.. ....+........+++...+....++++++ T Consensus 343 -~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d~--~~~~~~~~~~~~kgg~~~~~~~~~~~~~~~ 415 (417) T protein:vir:38 343 -VNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQ--KEAYQAEHAAELKGGDTNAKGNQNGSGTNA 415 (417) T ss_pred -HHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeeccccccccc--ccccccccccccCCCCCCCCCCCcCCCCcC Confidence 2333 489999888887754 332211 0 011111 101001111121222222222222223333 No 207 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=96.42 E-value=0.00065 Score=38.07 Aligned_cols=411 Identities=12% Similarity=0.049 Sum_probs=167.0 Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-ccccccccccccccccccccccccccchHHHHHHHHHHh Q lcl|Aclame:pro 36 VRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYE-QRP-DIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSY 113 (492) Q Consensus 36 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~-G~~-~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~ 113 (492) +..-..+-.-.-.+.+....-. ...+ ..|+ -++ +.+..+. ....... ..-......-.+++.... T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~--~~~~----~~~~~~e~~~~lr~~~----~~~ly~~---m~e~D~~i~s~l~~rk~a 67 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGV--VDGW----TVWDPFEQTPELQWPQ----SVAVYSR---MDNEDSRVTSLLEAISLP 67 (469) T ss_pred CCCcccCCCCccchhhhhhccc--ccch----hhcccccccccccccc----chHHHHH---HHhhChHHHHHHHHHHHH Confidence 1111111110001111100000 0000 1110 000 1110000 0000000 000134455566667777 Q ss_pred hhcCCeeecCC--chhHHHHHHHHHh------------------ccHHHHHHHHHHHHHhcCeEE-EEEEeCC----CCc Q lcl|Aclame:pro 114 IVGKPIAFKHT--DDEVVKRIDEVLG------------------NRFDDKLHSVLTGASNKGIEW-LHPYLDE----EGE 168 (492) Q Consensus 114 l~g~~~~~~~~--d~~~~~~l~~~~~------------------n~~~~~~~~~~~~~~~~G~~~-~~v~~d~----~g~ 168 (492) +.+-+.++... +++..+.+...+. ..+...+.++...++-||.++ ++||... +|. T Consensus 68 v~~~~w~v~p~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~ 147 (469) T protein:vir:10 68 IRSTPWRIRANGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGR 147 (469) T ss_pred HhcCCceEecCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCc Confidence 78888777643 3333333332221 124455666666777789864 5777532 455 Q ss_pred eEEEEEcccc--eE--EEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccC Q lcl|Aclame:pro 169 FKLFRVPAEQ--GI--PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSW 244 (492) Q Consensus 169 ~~i~~~~p~~--~~--~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (492) ..+..+.|+. .+ -.|+++ +.+.. ++...... .+....+ .... ......+. T Consensus 148 ~~~~~l~~rp~~~i~~~~~~~~--~~l~~-~~~~~~~~----------~~~~~~~---------~~~~----~~~~lp~~ 201 (469) T protein:vir:10 148 FWLRKLAPRPQWTISKFNVAPD--GGLES-IEQIAPPA----------RTRGSLY---------VANI----APPEIPVN 201 (469) T ss_pred eeeeeeeecCcccceeeeeccC--Cceee-eeecCccc----------ccccccc---------cCCC----CccccccC Confidence 5444332221 11 011211 11110 11000000 0000000 0000 00000111 Q ss_pred CccceEee--cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCc---ccchhhHHhhh-----hccce Q lcl|Aclame:pro 245 GKIPFIPF--KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDD---QELPEFKRLLR-----YYGAI 314 (492) Q Consensus 245 g~iPvv~~--~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~~~~-----~~~~~ 314 (492) +.+-.++- ..|+.|.|.+..+...---=+..+.+.+.-++.|..|+.+.+-... ++.......+. ...++ T Consensus 202 k~i~~~~~~~~g~p~g~gLlr~~~~~~~fK~~~~~~w~~f~EryG~P~~vgky~~~a~~~ek~~l~~a~~~~~~g~~a~~ 281 (469) T protein:vir:10 202 RLVVYTRNKRPGQWQGKSILRSAYKHWLLKDKLLRIEAATAERNGMGIPVGTASSATDEDEVRKMAALARSVRGGINAGV 281 (469) T ss_pred cEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcceEEecCCCCCHHHHHHHHHHHHHHhcCCceEE Confidence 11111111 1356788888876555444455677888999999999998875332 22222222222 12245 Q ss_pred ecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H Q lcl|Aclame:pro 315 KVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDK-FGSAPSGVALEFLYTNLNLKADKLARKAKVAIQ-E 392 (492) Q Consensus 315 ~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~-~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~-~ 392 (492) .++++.+++++....+...++.+++...+.|...--...++.+. .|+...|..-.- -....+..-.+.+...+. + T Consensus 282 iip~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG~tlTs~~~gGS~a~~~vh~e---v~~d~~~sDa~~i~~tln~~ 358 (469) T protein:vir:10 282 GLAQGQILELLGVSGNLPDIRRAIEGHDRSIALSGLAHFLNLDGKGGSYALASVLED---PFTQAVHAYATSICRIANQH 358 (469) T ss_pred EccCCceEEEeecCCCchHHHHHHHHHHHHHHHHHhcccccccCccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH Confidence 57888899999888777889999999988887654333333332 222222222111 122233444455556664 3 Q ss_pred HHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHh--cc-----CChHHHHHhCCCCCCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 393 LLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GI-----VSHETVLENHPFVEDLQAELERIEQEQTEY 465 (492) Q Consensus 393 ~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~-----vs~et~l~~l~~v~D~~~E~~ri~~E~~~~ 465 (492) +++-++.+- ...+..-..+.|.... .+....++.+.+++ |+ ++.+.+.+.++. ..++.+-.-+..++... T Consensus 359 li~~l~~lN-~g~~~~~P~~~~~~~e-~~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gi-p~~~~~~~~~~~~~~~~ 435 (469) T protein:vir:10 359 IIEDLVDIN-FGVDTPAPVLTFDPIG-SRQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNL-PSELNDTPSAEPEEPAA 435 (469) T ss_pred HHHHHHHhc-CCCCCCccEEEecCCC-CcHHHHHHHHHHHHhcCCccCccccHHHHHHHhCC-CCCCCCcccccchhccc Confidence 555544432 2222223456675443 45556677777764 55 455667777753 22222111111111100 Q ss_pred HHhhccccCCCCC-CCCcCCCCCCCCCC Q lcl|Aclame:pro 466 NKQLPNLDDGGAD-SAQQQERSNNKESE 492 (492) Q Consensus 466 ~~~~~~~~~~~~~-~~~~~~~~~~~~~e 492 (492) ...+.....+.. .+..+.......++ T Consensus 436 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (469) T protein:vir:10 436 -VPNQSAAPARTRSSGNADARARAPKAD 462 (469) T ss_pred -CCCCCccccccCCCCCcccccccCCCh Confidence 000110011111 11111111111111 No 208 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=96.36 E-value=0.0007 Score=37.88 Aligned_cols=444 Identities=10% Similarity=0.055 Sum_probs=190.6 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhh-cCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVR-TNNKPETLEEMIVRYIKQHLEKL-PEISIGQEYYEQRPDIVK 78 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~-~~~~~~~~YY~G~~~i~~ 78 (492) ...+-.-..++++--.-.|++|..-+..++ .+.... ..+-+..+.+.. .-..... +.-.....|-.+-+-+.. T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (694) T protein:vir:10 24 AAALAAAATIATAAAQPVPADFARRGALNA-LDAAPVAEPSPSLRLARQF----EVDVSNYTPRERRAASYALDFNGTSM 98 (694) T ss_pred hhhhhhhhhhhhcCCCcccCCccccccchh-hcccccCCCCcchhhhhhc----cccccCCCccccchhhhhhccCcccc Confidence 111111112233333455666655543333 111111 111111111111 1000000 000011111111110000 Q ss_pred c--ccccccccccccccccccc-ccchHHHHHHHHHHhhhcCCeeecCC--------------------chhHHHHHH-H Q lcl|Aclame:pro 79 E--PKPVDATGAVDPLKPDDRM-ITNFHANLVDQKVSYIVGKPIAFKHT--------------------DDEVVKRID-E 134 (492) Q Consensus 79 ~--~~~~~~~~~~~~~~~~~ri-~~n~~~~ivd~~~~~l~g~~~~~~~~--------------------d~~~~~~l~-~ 134 (492) - .-+....+.-.+.-+ .+ .++-.+.++.+.+..+.-+-+..++. +.+..+.|. . T Consensus 99 ~~l~~~~~~~F~Gy~~la--~laQ~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e 176 (694) T protein:vir:10 99 DALSFVTSSGFPGFPTLV--LLAQLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDE 176 (694) T ss_pred cchhhhhccCcchHHHHH--HHhhccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHH Confidence 0 000000000000000 00 11223445556665554443332211 112333343 3 Q ss_pred HHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc----e--------------EEEEEcccceEEEecCCCCCceEEEEE Q lcl|Aclame:pro 135 VLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGE----F--------------KLFRVPAEQGIPIWTDKEHEELEAFIR 196 (492) Q Consensus 135 ~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~----~--------------~i~~~~p~~~~~i~d~~~~~~~~~~i~ 196 (492) +.+=+....+.+..+.+-.||.+..++-.+.++. | -+.+++|.++.|-.-+ ...+.. T Consensus 177 ~erl~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n--~~dP~s--- 251 (694) T protein:vir:10 177 IERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN--SINPVA--- 251 (694) T ss_pred HHHHHHHHHHHHHHHhhccccceEEEEEeecCccccccccccccccccCcceeeeEeecccccccchhh--hccchh--- Confidence 3334677889999999999999987776644331 1 1455555555552100 001100 Q ss_pred eeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccce--E-eecCccCCCCcHHHHHHHHHHHH Q lcl|Aclame:pro 197 MYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--I-PFKNNDLEISDIFMYKTLIDAYN 273 (492) Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v-~~~nn~~~~s~~~~v~~liD~~~ 273 (492) -.+|.+.. |++ .+..+ ....-+.|-..|+ + .-.++.+|.|....+.+-+++.+ T Consensus 252 ---------pdfgkP~~--y~V-~G~~I------------H~SRL~~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~~ 307 (694) T protein:vir:10 252 ---------DDFYKPST--WWM-IGTEV------------HATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWL 307 (694) T ss_pred ---------hccCCCce--EEE-eceEE------------eeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHH Confidence 00111111 111 00000 0000011111111 1 01124568888888888888888 Q ss_pred HHHHHHHHHHHhcCCceEEE------ecCCcccchh---hHHhhh-hccceecCCCCcceeeecccCHHHHHHHHHHHHH Q lcl|Aclame:pro 274 RRLSDLSNTFKDSNELTYVL------KNYDDQELPE---FKRLLR-YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQ 343 (492) Q Consensus 274 ~~~s~~~~~~~~~~~~~l~~------~g~~~~~~~~---~~~~~~-~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~ 343 (492) ++.-.....+..+....+.. .+....+... .....+ ..+++.+++ ++=+|.+.+.+...+...+.+... T Consensus 308 rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk-~~Eefeq~stslSGLddVi~qf~q 386 (694) T protein:vir:10 308 RTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK-ATEEFFQFNTPLSGLDALQAQAQE 386 (694) T ss_pred HHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEec-CCcceEEEecccCCHHHHHHHHHH Confidence 88766666555444333211 1100101111 111122 233444543 223677778899999999999999 Q ss_pred HHHHHhCCCCCCcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCcceeeeEEeCCCCC Q lcl|Aclame:pro 344 KIMLFGQAVDFSSDKF---GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH-FDIKGEHKDVDISFNYNKV 419 (492) Q Consensus 344 ~i~~~a~~p~~~~~~~---~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~-~~~~~~~~~i~i~f~~~~p 419 (492) .|...+++|-.-+... |=|.||++=..-|...+. ...++.+...+++++.++... +|.. +. ++.++|++--. T Consensus 387 ~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~--s~Qe~~L~p~L~rl~~ii~rS~~G~i-dp-~i~~~fnPL~q 462 (694) T protein:vir:10 387 QMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DP-SIKWQWNALRE 462 (694) T ss_pred HHHhhhcCchhhhhccCcccccccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCC-CC-cceEEeCCCCC Confidence 9999999997544322 236788876666666544 455889999999999887644 3443 32 68889999988 Q ss_pred cCHHHHHHHHHHH---------hccCChHHHHHhC------CCCC--CH--------HHHHHHHHHHHHHHHHhhccccC Q lcl|Aclame:pro 420 ANTELQVQTAQQS---------MGIVSHETVLENH------PFVE--DL--------QAELERIEQEQTEYNKQLPNLDD 474 (492) Q Consensus 420 ~d~~e~~~~~~k~---------~g~vs~et~l~~l------~~v~--D~--------~~E~~ri~~E~~~~~~~~~~~~~ 474 (492) .+..|.|+...|- .|+|+......+| ++.. |. +.++.-.. .-.++... T Consensus 463 mtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~-------~~~~~~~~ 535 (694) T protein:vir:10 463 LDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVL-------TYVQRLAE 535 (694) T ss_pred cCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhH-------hhhcCccc Confidence 8999988875432 3666665555553 2210 10 11111100 00000000 Q ss_pred CCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 475 GGADSAQQQERSNNKESE 492 (492) Q Consensus 475 ~~~~~~~~~~~~~~~~~e 492 (492) ++..+.....+++...+- T Consensus 536 ~~~~~~~~~~~~g~~~~~ 553 (694) T protein:vir:10 536 GGDTGAPGGARAGATAPP 553 (694) T ss_pred ccccCCCCcccccccCCC Confidence 000000000111100000 No 209 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=96.32 E-value=0.00074 Score=37.73 Aligned_cols=378 Identities=7% Similarity=-0.004 Sum_probs=165.0 Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-ccccc---c--cccccccccccccccccchHHHHHHHHHH Q lcl|Aclame:pro 39 NNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIV-KEPKP---V--DATGAVDPLKPDDRMITNFHANLVDQKVS 112 (492) Q Consensus 39 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~-~~~~~---~--~~~~~~~~~~~~~ri~~n~~~~ivd~~~~ 112 (492) -.+|+-+ -....+.....+++.++.|....- ..... . .....-....+..=+.+.-.-.+|+.+++ T Consensus 1 ~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~ 72 (424) T protein:vir:18 1 MEEPKYT--------IDLRTNNGWWARLQSWFVGGRLVTPNQGSQTGPVSAHGHLGDSSINDERILQISTVWRCVSLIST 72 (424) T ss_pred CCCCcce--------EeecCCCchHHHHHhhhcccccccccccccccccccccccccccccHHHhhccHHHHHHHHHHHH Confidence 0001100 011234445555566665542110 00000 0 00000000000000111223345666666 Q ss_pred hhhcCCeeec-C-Cch---h---HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccc Q lcl|Aclame:pro 113 YIVGKPIAFK-H-TDD---E---VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQ 178 (492) Q Consensus 113 ~l~g~~~~~~-~-~d~---~---~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~ 178 (492) -+.+-|+.+- . .+. . .......+.. | ....+...+..+.+.+|.+|+++-++.+|++ .+..++|.. T Consensus 73 ~iA~lp~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~ 152 (424) T protein:vir:18 73 LTACLPLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSAN 152 (424) T ss_pred hhccCceEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcc Confidence 6666676651 1 111 0 1112333332 3 2345666778899999999999999988875 567788888 Q ss_pred eEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----C Q lcl|Aclame:pro 179 GIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----N 254 (492) Q Consensus 179 ~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----n 254 (492) +.+..+. +.+.+ .|.. ++... .+.... |++++ + T Consensus 153 V~v~~~~---~~~~y---~~~~-~g~~~-~~~~~e-----------------------------------Iih~r~~~~d 189 (424) T protein:vir:18 153 MDVKLVG---KKVVY---RYQR-DSEYA-DFSQKE-----------------------------------IFHLKGFGFT 189 (424) T ss_pred eEEEEcC---CeEEE---EEEe-CCeEE-Eecccc-----------------------------------EEEecCcCCC Confidence 7765432 11111 1111 11100 011111 22222 1 Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCc----ccchhhHHhhh-------hccceecCCCCcce Q lcl|Aclame:pro 255 NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDD----QELPEFKRLLR-------YYGAIKVSDNGGVD 323 (492) Q Consensus 255 n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~----~~~~~~~~~~~-------~~~~~~~~~~~d~~ 323 (492) ...|.|.++.....++....+..-..+.+...+.|-.++.-... +....++..+. .++++.++++.+++ T Consensus 190 g~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~~~g~nag~~~vl~~g~~~~ 269 (424) T protein:vir:18 190 GLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTS 269 (424) T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHHHHHHHHHHHhCCcccCCceeccCCceEE Confidence 23467777666666655444444445555666667665543221 11122222211 23455566655555 Q ss_pred eeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 324 TIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGS-APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD 402 (492) Q Consensus 324 ~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~-~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 402 (492) .+........+.+..+..+..|+..=++|..-.+...+ +..+..++-....+ +..+|.-.++.+...++ T Consensus 270 ~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f----------~~~tl~P~~~~ie~~l~ 339 (424) T protein:vir:18 270 AIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGF----------LQYTLQPYISRWENSIQ 339 (424) T ss_pred ecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHH----------HHHHHHHHHHHHHHHHH Confidence 55444344455666677778888888888654432222 22122222221111 12222222222222221 Q ss_pred c----CC--cceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 403 I----KG--EHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNL 472 (492) Q Consensus 403 ~----~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~ 472 (492) . .. ....+++.+...+..|..+.++.+.++ .|+++.-.++++++.- ++-+.-+ ......+. T Consensus 340 ~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD~~~---------~~~n~~~l 410 (424) T protein:vir:18 340 RWLIPAKDVGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGGDVAM---------RQSQYVPI 410 (424) T ss_pred hhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeee---------eccCccch Confidence 1 11 122355555666778999999999887 4789988888776532 2110000 00000000 Q ss_pred cCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 473 DDGGADSAQQQERSNNKES 491 (492) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~ 491 (492) ...+.+. +..++++ T Consensus 411 ~~~~~~~-----~p~~~ga 424 (424) T protein:vir:18 411 TDLGTNK-----EPRNNGA 424 (424) T ss_pred HhhhccC-----CCccCCC Confidence 0011111 1111111 No 210 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=96.29 E-value=0.00078 Score=37.63 Aligned_cols=430 Identities=12% Similarity=0.071 Sum_probs=157.5 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) ++.| +..+...-.-...+- ....+++ ....++.+. .++|.++.-| .|.+...... ...-..++. T Consensus 1 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~----~~~~~~~~~~--~p~~~~~~L~------~~~e~~~~~ 64 (651) T protein:vir:99 1 MTDT-TGETQETKVHVEGLG-GEADLAK--SPNSTQIPD----HRIQSHNVGV--NPPYNPDRLA------AFLELNETL 64 (651) T ss_pred CCCc-cceeeeeEEEeeccc-ccccccc--cccccccch----hhhcccCCCC--CCCCCHHHHH------HHHhcChHH Confidence 1111 000100000000000 0000000 001112221 2444443322 1222111111 111135888 Q ss_pred HHHHHHHHHhhhcCCeeecC-----Cc---hhHHHHHHHHHhc----------------cHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 104 ANLVDQKVSYIVGKPIAFKH-----TD---DEVVKRIDEVLGN----------------RFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 104 ~~ivd~~~~~l~g~~~~~~~-----~d---~~~~~~l~~~~~n----------------~~~~~~~~~~~~~~~~G~~~~ 159 (492) ..+|+..+..+.|-++.+.. .+ ++..+..+.++.+ .+......+..+...+|.+|+ T Consensus 65 ~~~i~~~~~~iag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~i 144 (651) T protein:vir:99 65 ATGIRKKSRYEVGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLAL 144 (651) T ss_pred HHHHHHHhhhhhccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhh Confidence 99999999999988876532 11 2222233333321 233455566677888899888 Q ss_pred EEEeCCCCce-EEEEEcccceEEEecCCC--------------CCceEE---------------EEEeeeeccceeEEEE Q lcl|Aclame:pro 160 HPYLDEEGEF-KLFRVPAEQGIPIWTDKE--------------HEELEA---------------FIRMYKLENETKVEYW 209 (492) Q Consensus 160 ~v~~d~~g~~-~i~~~~p~~~~~i~d~~~--------------~~~~~~---------------~i~~~~~~~~~~~~~~ 209 (492) -+..+..|.+ .+..++|..+ -+..+.. ...+.. ....+.........++ T Consensus 145 eiIrn~~g~pv~L~~lp~~~~-Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~ 223 (651) T protein:vir:99 145 EMLTDIEGRPVGLAYVPARTV-RVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVI 223 (651) T ss_pred hhhhcCccchhhhhhcChhhe-eeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeee Confidence 8777665553 2222222211 0100000 000000 0000000000000000 Q ss_pred --ecceEEEEEEecceeeec--c-ccccccccccceeccCCccc---eEeecCc-----cCCCCcHHHHHHHHHHHHHHH Q lcl|Aclame:pro 210 --DKVTVNYYVYENGSLIPD--Y-SNNLENSKTHFSTGSWGKIP---FIPFKNN-----DLEISDIFMYKTLIDAYNRRL 276 (492) Q Consensus 210 --~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~iP---vv~~~nn-----~~~~s~~~~v~~liD~~~~~~ 276 (492) ....+............. . ....+.. .....+....+| |++|++. ..|.|.+......++....+. T Consensus 224 ~~~~~~v~~~~~~d~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~ 302 (651) T protein:vir:99 224 DESGDEPTIRYREDEESEREPIFVDRETGDV-TTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAK 302 (651) T ss_pred ccCCcceeEEeccCcceeeeeecccceeeeE-EEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHH Confidence 000000000000000000 0 0000000 000000111122 4555432 257788877766665555554 Q ss_pred HHHHHHHHhcCCceEEEe--cC--CcccchhhHHhhh-----hccceecCC---------CCcceeeeccc---CHHHHH Q lcl|Aclame:pro 277 SDLSNTFKDSNELTYVLK--NY--DDQELPEFKRLLR-----YYGAIKVSD---------NGGVDTIQVEV---PVENSK 335 (492) Q Consensus 277 s~~~~~~~~~~~~~l~~~--g~--~~~~~~~~~~~~~-----~~~~~~~~~---------~~d~~~l~~~~---~~~~~~ 335 (492) .-..+.+...+.|-.++. |. +.+....++..+. .++++.++. +.+++|..... ....+. T Consensus 303 ~~~~~~f~NG~~p~gil~~~~~~ls~e~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfl 382 (651) T protein:vir:99 303 DYNRDFFDNDTIPRMVIKVTGGELSEESKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFR 382 (651) T ss_pred HHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHHHH Confidence 445555565555655543 42 2222222322221 223333332 22555554332 234456 Q ss_pred HHHHHHHHHHHHHhCCCCCCccccc-c---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CC- Q lcl|Aclame:pro 336 KYLDELYQKIMLFGQAVDFSSDKFG-S---APSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-----KG- 405 (492) Q Consensus 336 ~~i~~l~~~i~~~a~~p~~~~~~~~-~---~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~-----~~- 405 (492) ...+..+..|+..=++|..-.+... + +.....+.+ ...+|.-+++.+...++. .. T Consensus 383 e~r~~~~~eIa~afgVPp~~lG~~~~~~~sn~E~~~~~f---------------~~~tL~P~~~~ie~eln~kLl~~~e~ 447 (651) T protein:vir:99 383 QFREKNEHEIAKVLEVPPVKIGVTDSANRSNSDQQDKDF---------------ALEVIQPEQHTFAEWLYQIIHQQALG 447 (651) T ss_pred HHHHHHHHHHHHHhCCCHHHhccCCCCCcccHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhcCcccc Confidence 6667777788888788865432211 1 111111111 111222222222211111 01 Q ss_pred -cceeeeEEeC--CCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCH--HHHHHHHHHHHHHHHHhhccccCCC Q lcl|Aclame:pro 406 -EHKDVDISFN--YNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDL--QAELERIEQEQTEYNKQLPNLDDGG 476 (492) Q Consensus 406 -~~~~i~i~f~--~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~--~~E~~ri~~E~~~~~~~~~~~~~~~ 476 (492) ....+.+.|+ ..+-.|....++.+.++ .|+++...++++++. +++. ..-+..+... .......++ T Consensus 448 ~~~~~i~~ef~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~------~~g~~~~gg 521 (651) T protein:vir:99 448 VTDWTIEYELRGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAE------VAGDVAGGG 521 (651) T ss_pred ccCceEEEEeccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccccccccccccc------cccccccCC Confidence 1123455554 44556888888888776 489999888887753 3221 1111111000 000001111 Q ss_pred CCCCC----cCCCCCCCCCC Q lcl|Aclame:pro 477 ADSAQ----QQERSNNKESE 492 (492) Q Consensus 477 ~~~~~----~~~~~~~~~~e 492 (492) .+.+. ++.+.++.+.+ T Consensus 522 e~~~~~~~~~~~~~~~~e~~ 541 (651) T protein:vir:99 522 ETEAVHEPPEENKIGEREWD 541 (651) T ss_pred CCcccccCccccccccchhh Confidence 11111 11111111121 No 211 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=96.29 E-value=0.00078 Score=37.63 Aligned_cols=374 Identities=12% Similarity=0.036 Sum_probs=148.4 Q ss_pred CChhhHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCC Q lcl|Aclame:pro 40 NKPETLEEMIVRYI-KQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKP 118 (492) Q Consensus 40 ~~~~~~~~~l~~~i-~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~ 118 (492) -..+.+..+++..+ .+... .-+.+-.+...... ...... -.+.-+.+.-....|+.+++-+..-| T Consensus 1 ~~~~~~~~~~k~~~~~~~~~---------~~~~~~~~~~~~~~---~~~~~v--~~~~a~~~~~v~~~i~~Ia~~ia~lp 66 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWID---------QSASKLYDFSPWKN---KSFWGV--INNTLETNETIFSAITKLSNSMASLP 66 (409) T ss_pred CcccccchhhhhHHhhhhhc---------CCcccccccccccC---cccccc--chhhhhccHHHHHHHHHHHHhhhhCc Confidence 11112222222211 01000 00011111000000 000000 00000112333445666666666666 Q ss_pred eeecCCchhH-HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCce Q lcl|Aclame:pro 119 IAFKHTDDEV-VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEEL 191 (492) Q Consensus 119 ~~~~~~d~~~-~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 191 (492) +.+--..+.. ......+.. | .-..+...+...++.+|.+|+++.++..|++ .+..++|..+.++.++.. +.+ T Consensus 67 ~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~-~~~ 145 (409) T protein:vir:94 67 LKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS-REL 145 (409) T ss_pred eeEeecccccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCC-cEE Confidence 6652221111 112222322 3 2345566778889999999999999988886 677888888877765422 111 Q ss_pred EEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHH Q lcl|Aclame:pro 192 EAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYK 266 (492) Q Consensus 192 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~ 266 (492) .+ .+....+..++ +.... |++|++ ...|.|.+.... T Consensus 146 ~y---~~~~~~g~~~~-~~~~d-----------------------------------vih~r~~~~~~~~~G~s~l~~~~ 186 (409) T protein:vir:94 146 YY---SIHAATGNKLI-VHNMD-----------------------------------MLHFKHIVASNMVQGISPIDVLK 186 (409) T ss_pred EE---EEEcCCceEEE-Ecccc-----------------------------------EEEecCCCCCCccccccHHHHHH Confidence 10 01111111110 11111 222221 124677776666 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCc-eEEEe-cC--CcccchhhHHhhh-----hccceecCCCCcceeeecccCHHHHHHH Q lcl|Aclame:pro 267 TLIDAYNRRLSDLSNTFKDSNEL-TYVLK-NY--DDQELPEFKRLLR-----YYGAIKVSDNGGVDTIQVEVPVENSKKY 337 (492) Q Consensus 267 ~liD~~~~~~s~~~~~~~~~~~~-~l~~~-g~--~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~l~~~~~~~~~~~~ 337 (492) ..++....+..- .+..+..+ -.++. +. +.+........++ .++++.++++-+++.++.......+.+. T Consensus 187 ~~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~ 263 (409) T protein:vir:94 187 NTTDFDNAVRTF---NLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVAS 263 (409) T ss_pred HHHHHHHHHHHH---HHHhcCCCCeeEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHH Confidence 666544433221 12333322 22222 22 1222222222221 2335555555455544433333445555 Q ss_pred HHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCC--cceee Q lcl|Aclame:pro 338 LDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-----IKG--EHKDV 410 (492) Q Consensus 338 i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-----~~~--~~~~i 410 (492) .+..+..|+..=++|..-.+..+ ..+...++-... ..+..+|.-+++.+...++ ... ....+ T Consensus 264 ~~~~~~~Ia~~fgVPp~~lg~~~-~~~~sn~e~~~~----------~f~~~~l~P~~~~ie~~ln~~Ll~~~~~~~~~~i 332 (409) T protein:vir:94 264 ENLTRERVANVFQLPSVFLNARS-NTNFAKNEELNR----------FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYF 332 (409) T ss_pred HHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCCcccccCcceE Confidence 66666777777777765443221 111111111111 1112222222222222111 111 11224 Q ss_pred eEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc-CCC Q lcl|Aclame:pro 411 DISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQ-QER 485 (492) Q Consensus 411 ~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~-~~~ 485 (492) ++....-+-.|..+.++++.++ .|+++.-.+++.++. +++-+.-+- .....+.+ .....+. ... T Consensus 333 ~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~---------~~n~~~~~--~~~~~~~~~kG 401 (409) T protein:vir:94 333 KFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLI---------SGDLYPID--TPLELRKSLKG 401 (409) T ss_pred EeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeEee---------cccccccc--cchhhcccccC Confidence 4444555667889999998887 478888887777653 121110000 00000000 0000000 111 Q ss_pred CCCCCCC Q lcl|Aclame:pro 486 SNNKESE 492 (492) Q Consensus 486 ~~~~~~e 492 (492) .++.++| T Consensus 402 G~~n~~e 408 (409) T protein:vir:94 402 GDKNVNE 408 (409) T ss_pred CCCCcCC Confidence 1111122 No 212 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=96.13 E-value=0.00096 Score=37.12 Aligned_cols=421 Identities=9% Similarity=0.036 Sum_probs=176.5 Q ss_pred ChhhhH--------HHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 1 MQFIQL--------ISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQ 72 (492) Q Consensus 1 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G 72 (492) ..-+.. --.+||.|--.+ --|+|.+..-....+..+..... -+ .||.| T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------------~l-~~~~~ 107 (695) T protein:vir:78 52 LNALDAAPVAEPSPSLRLARQFEVDV---SNYTPRERRAASYALDFNGTSMD--------------------AL-SFVTS 107 (695) T ss_pred ccccccccccCCCcccccceeceecc---ccCCccccchhhhhhcccccccc--------------------cc-hhhhc Confidence 000000 001111111111 11122111111111111000000 00 11222 Q ss_pred CCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee-------------------cC-CchhHHHHH Q lcl|Aclame:pro 73 RPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF-------------------KH-TDDEVVKRI 132 (492) Q Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~-------------------~~-~d~~~~~~l 132 (492) -.-+-+..- +... .++-.+.++.+.+..+.-+-+.. .. .+.+..+.| T Consensus 108 ~~F~Gy~~l------a~la-------Q~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L 174 (695) T protein:vir:78 108 SGFPGFPTL------VLLA-------QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQI 174 (695) T ss_pred cCcchHHHH------HHHh-------hccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHH Confidence 110000000 0000 00111122222222222111111 11 122333444 Q ss_pred H-HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc----e--------------EEEEEcccceEEEecCCCCCceEE Q lcl|Aclame:pro 133 D-EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGE----F--------------KLFRVPAEQGIPIWTDKEHEELEA 193 (492) Q Consensus 133 ~-~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~----~--------------~i~~~~p~~~~~i~d~~~~~~~~~ 193 (492) . .+.+=++...+.+..+.+-.||.+..++-.+.++. | -+.+++|.++.|-.-+ ...+.. T Consensus 175 ~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n--~~dP~s 252 (695) T protein:vir:78 175 NDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN--SINPVA 252 (695) T ss_pred HHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhh--hccchh Confidence 3 33334777889999999999999987776654331 1 1455555555552100 001100 Q ss_pred EEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCc--cceE-eecCccCCCCcHHHHHHHHH Q lcl|Aclame:pro 194 FIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGK--IPFI-PFKNNDLEISDIFMYKTLID 270 (492) Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--iPvv-~~~nn~~~~s~~~~v~~liD 270 (492) -.+|.+.. |++ .+..+ + ...-+.|-. +|-+ .-.++.+|.|....+.+-++ T Consensus 253 ------------pdfgkP~~--y~V-~G~kI-----------H-~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~ 305 (695) T protein:vir:78 253 ------------DDFYKPST--WWM-IGTEV-----------H-ATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYID 305 (695) T ss_pred ------------hccCCCce--EEE-eceEE-----------e-eeeEEEecCCCchhhhhcccccCcccHHHHHHHHHH Confidence 00111111 111 00000 0 000011111 1111 01124568888888888888 Q ss_pred HHHHHHHHHHHHHHhcCCceEEEe---c-CCccc--chh---hHHhhh-hccceecCCCCcceeeecccCHHHHHHHHHH Q lcl|Aclame:pro 271 AYNRRLSDLSNTFKDSNELTYVLK---N-YDDQE--LPE---FKRLLR-YYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 340 (492) Q Consensus 271 ~~~~~~s~~~~~~~~~~~~~l~~~---g-~~~~~--~~~---~~~~~~-~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~ 340 (492) +.+++.-.....+..+....+..- . .++.. ... .....+ ..+++.+++ ++=+|.+.+.+...+...+.+ T Consensus 306 ~~~rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk-~~Eefeq~stslSGLddVi~q 384 (695) T protein:vir:78 306 NWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDK-ATEEFFQFNTPLSGLDALQAQ 384 (695) T ss_pred HHHHHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEec-CCcceEEEecccCCHHHHHHH Confidence 888887666665554444332110 0 01111 111 111122 233444543 223677778899999999999 Q ss_pred HHHHHHHHhCCCCCCcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCcceeeeEEeCC Q lcl|Aclame:pro 341 LYQKIMLFGQAVDFSSDKF---GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH-FDIKGEHKDVDISFNY 416 (492) Q Consensus 341 l~~~i~~~a~~p~~~~~~~---~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~-~~~~~~~~~i~i~f~~ 416 (492) ....|...+++|-.-+... |=|.||++=..-|...+. ...++.+...+++++.++... +|.. +. ++.++|++ T Consensus 385 f~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~--s~Qe~~L~p~L~rl~~ii~rS~~G~i-dp-di~~~fnP 460 (695) T protein:vir:78 385 AQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DP-SIKWQWNA 460 (695) T ss_pred HHHHHHhhhcCchhhhhccCCccccccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCC-CC-cceEEeCC Confidence 9999999999997544322 236788876666666544 455889999999999887644 3443 32 58899999 Q ss_pred CCCcCHHHHHHHHHHH---------hccCChHHHHHhC------CCCC--CHHHHHHHHHHHH-HHHHHhhccccCCCCC Q lcl|Aclame:pro 417 NKVANTELQVQTAQQS---------MGIVSHETVLENH------PFVE--DLQAELERIEQEQ-TEYNKQLPNLDDGGAD 478 (492) Q Consensus 417 ~~p~d~~e~~~~~~k~---------~g~vs~et~l~~l------~~v~--D~~~E~~ri~~E~-~~~~~~~~~~~~~~~~ 478 (492) --..+..|.|+...|- .|+|+......+| ++.. |...+=-...++. .....-.++...++.. T Consensus 461 L~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~ 540 (695) T protein:vir:78 461 LRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDT 540 (695) T ss_pred CCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhhcCccccccc Confidence 9888999988875432 3666665555553 2210 1000000000000 0000000011111111 Q ss_pred CCCcCCCCCCCCCC Q lcl|Aclame:pro 479 SAQQQERSNNKESE 492 (492) Q Consensus 479 ~~~~~~~~~~~~~e 492 (492) +.....++|...+- T Consensus 541 ~~~~~~~~g~~~~~ 554 (695) T protein:vir:78 541 GAPGGARAGATAPP 554 (695) T ss_pred CCCCCCCCCCCCCC Confidence 11111111111111 No 213 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=96.12 E-value=0.00099 Score=37.07 Aligned_cols=384 Identities=13% Similarity=0.045 Sum_probs=147.6 Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC Q lcl|Aclame:pro 45 LEEMIVRYIKQHLEKL-PEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH 123 (492) Q Consensus 45 ~~~~l~~~i~~~~~~~-~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~ 123 (492) ...+|.+++++....- .....+-+|. |.. + ...... .... ... .-...+..-.+|+.+++-+.+-|+.+-- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~-~-~~~~~~-~~~~-~~~---~a~~~~~v~~~v~~ia~~iA~lp~~v~~ 72 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKFNDAFIKYI-GQT-F-TKYDNN-GKTY-LEQ---GYNINPDVYSCISQMAAKTVAVPYTIKV 72 (460) T ss_pred CchhHHHHHhhhhccCCCchHHHHHhh-ccc-c-CCCccc-hhhh-hHH---HHhcchHHHHHHHHHHHhhhhCceEEEe Confidence 2334444443322111 0111122222 221 0 000000 0000 000 0012234455677777766666765521 Q ss_pred C--chhH-------------------------------HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCC Q lcl|Aclame:pro 124 T--DDEV-------------------------------VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDE 165 (492) Q Consensus 124 ~--d~~~-------------------------------~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~ 165 (492) . +... ......++. | ....+...+..+.+.+|.||+++.++. T Consensus 73 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~ 152 (460) T protein:vir:10 73 VKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPD 152 (460) T ss_pred ccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecC Confidence 1 1100 011111221 2 234566667789999999999998765 Q ss_pred C----Cce-EEEEEcccceEEEecCCCCCc-eEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccc Q lcl|Aclame:pro 166 E----GEF-KLFRVPAEQGIPIWTDKEHEE-LEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHF 239 (492) Q Consensus 166 ~----g~~-~i~~~~p~~~~~i~d~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (492) . |.+ .+..++|..+.+..++..... ....++.|....+.....+.... T Consensus 153 ~~~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e-------------------------- 206 (460) T protein:vir:10 153 DGINAGVPSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDE-------------------------- 206 (460) T ss_pred CCccCceeEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccc-------------------------- Confidence 3 444 367788888877655332110 00011111111111111111111 Q ss_pred eeccCCccceEeec----------CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHH Q lcl|Aclame:pro 240 STGSWGKIPFIPFK----------NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKR 306 (492) Q Consensus 240 ~~~~~g~iPvv~~~----------nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~ 306 (492) |++|+ ....|.|.++.....+.....+..-..+.+...+.|-.++... +.+....++. T Consensus 207 ---------vih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~ 277 (460) T protein:vir:10 207 ---------VIHTKYANPNFDLQGSHLYGMSPIRAILRNINSQNSTIDNNVKTMQNGGVFGFIHGGSTGLTQPQADSLKQ 277 (460) T ss_pred ---------eEEEecCCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCHHHHHHHHH Confidence 23322 1124677777766666665555444455555555555544422 2222222332 Q ss_pred hhh--------hccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccc-ccchhHHHHHHHHHHHHH Q lcl|Aclame:pro 307 LLR--------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKF-GSAPSGVALEFLYTNLNL 377 (492) Q Consensus 307 ~~~--------~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~-~~~~Sg~Al~~~~~~l~~ 377 (492) .+. .++++.++++.+.+.++.......+.+..+..+..|+..=++|..-.+.. +++.++..++..... T Consensus 278 ~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~--- 354 (460) T protein:vir:10 278 RLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKR--- 354 (460) T ss_pred HHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHH--- Confidence 221 23355566555555554433444556666777788887777876543322 111111112111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----cCCcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC-- Q lcl|Aclame:pro 378 KADKLARKAKVAIQELLWFVFEHFD-----IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV-- 448 (492) Q Consensus 378 k~~~~~~~~~~~l~~~~~li~~~~~-----~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v-- 448 (492) ....+|.-.+..+...++ .........+.|+........+...+...+ .|+++...++++++.- T Consensus 355 -------f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~~l~~d~~~~~~~~~~g~~T~NE~R~~~g~~pi 427 (460) T protein:vir:10 355 -------VVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISELPEMQTDMVAMASWLNTIPVTPNEIRIAMKYETL 427 (460) T ss_pred -------HHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecchhhhHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCC Confidence 111122222222211111 111111223444222111122222222222 4889988888877532 Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 449 EDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 449 ~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ++. -.++.-- .....+.. +..++...+.+.+++ T Consensus 428 ~~~--~gD~~~~-----~~n~~~~~----~~~~~~~~~~~nq~~ 460 (460) T protein:vir:10 428 NQD--GMDIVFM-----PSNKVRID----DVSNNLIDSAFNQNQ 460 (460) T ss_pred CCC--CCCeeee-----cccccchh----hcccccCCCcccCCC Confidence 110 0000000 00000000 000111111111111 No 214 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=96.11 E-value=0.001 Score=37.04 Aligned_cols=414 Identities=9% Similarity=0.049 Sum_probs=174.4 Q ss_pred ChhhhH--------HHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 1 MQFIQL--------ISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQ 72 (492) Q Consensus 1 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G 72 (492) ..-+.. --.+||.|--.+ --|+|-+..-....+..+..... -+ .||.| T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------------~l-~~~~~ 107 (695) T protein:vir:36 52 LNALDAAPVVEPSPSLRLARQFEVDV---SNYTPRERRAASYALDFNGTSMD--------------------AL-SFVTS 107 (695) T ss_pred ccccccccccCCCcccccceeceecc---cccCccccchhhhhhcccccccc--------------------cc-hhhhc Confidence 000000 000111111111 11111111111111110000000 00 11222 Q ss_pred CCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee-------------------cC-CchhHHHHH Q lcl|Aclame:pro 73 RPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF-------------------KH-TDDEVVKRI 132 (492) Q Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~-------------------~~-~d~~~~~~l 132 (492) -.-+-+..- +... .++-.+.++.+.+..+.-+-+.. .. .+.+..+.| T Consensus 108 ~~F~Gy~~l------a~la-------Q~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L 174 (695) T protein:vir:36 108 SGFPGFPTL------VLLA-------QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQI 174 (695) T ss_pred cCcchHHHH------HHHh-------hccchhhHHHHHHHHhhcccceecccchhhhhhccccccccccccCchHHHHHH Confidence 110000000 0000 00111122222222222111111 11 122334444 Q ss_pred HH-HHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc----e--------------EEEEEcccceEEEecCCCCCceEE Q lcl|Aclame:pro 133 DE-VLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGE----F--------------KLFRVPAEQGIPIWTDKEHEELEA 193 (492) Q Consensus 133 ~~-~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~----~--------------~i~~~~p~~~~~i~d~~~~~~~~~ 193 (492) +. +.+=+....+.+..+.+-.||.+..++-.+.++. | -+.+++|.++.|-.-+ ...+.. T Consensus 175 ~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n--~~dP~s 252 (695) T protein:vir:36 175 NDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYN--SINPVA 252 (695) T ss_pred HHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccccccCcceeeeEeecccccccchhh--hccchh Confidence 43 3334677889999999999999987776654331 1 1455555555552100 001100 Q ss_pred EEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccce--E-eecCccCCCCcHHHHHHHHH Q lcl|Aclame:pro 194 FIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--I-PFKNNDLEISDIFMYKTLID 270 (492) Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v-~~~nn~~~~s~~~~v~~liD 270 (492) -.+|.+.. |++ .+..+ ....-+.|-..|+ + .-.++.+|.|....+.+-++ T Consensus 253 ------------pdfgkP~~--y~V-~G~kI------------H~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~ 305 (695) T protein:vir:36 253 ------------DDFYKPST--WWM-IGTEV------------HATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYID 305 (695) T ss_pred ------------hccCCCce--EEE-eceEE------------eeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHH Confidence 00111111 111 00000 0000011111111 1 01124568888888888888 Q ss_pred HHHHHHHHHHHHHHhcCCceEEE------ecCCcccchh---hHHhhh-hccceecCCCCcceeeecccCHHHHHHHHHH Q lcl|Aclame:pro 271 AYNRRLSDLSNTFKDSNELTYVL------KNYDDQELPE---FKRLLR-YYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 340 (492) Q Consensus 271 ~~~~~~s~~~~~~~~~~~~~l~~------~g~~~~~~~~---~~~~~~-~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~ 340 (492) +.+++.-.....+..+....+.. .+....+... .....+ ..+++.++++ +=+|.+.+.+...+...+.+ T Consensus 306 ~~~rT~~~v~~Li~~~~v~~lk~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk~-~Eefeq~stslSGLddVi~q 384 (695) T protein:vir:36 306 NWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKA-TEEFFQFNTPLSGLDALQAQ 384 (695) T ss_pred HHHHHHhHHHHHHHhhhHHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecC-CcceEEEecccCCHHHHHHH Confidence 88887666665554433332211 1100101111 111122 2334445432 23677778899999999999 Q ss_pred HHHHHHHHhCCCCCCcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCcceeeeEEeCC Q lcl|Aclame:pro 341 LYQKIMLFGQAVDFSSDKF---GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH-FDIKGEHKDVDISFNY 416 (492) Q Consensus 341 l~~~i~~~a~~p~~~~~~~---~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~-~~~~~~~~~i~i~f~~ 416 (492) ....|...+++|-.-+... |=|.||++=..-|...+. ...++.+...+++++.++... +|.. +. ++.++|++ T Consensus 385 f~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~--s~Qe~~L~p~L~rl~~ii~rS~~G~i-dp-di~~~fnP 460 (695) T protein:vir:36 385 AQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DP-SIKWQWNA 460 (695) T ss_pred HHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCC-CC-cceEEeCC Confidence 9999999999997544322 236788876666666544 455889999999999887644 3443 32 68899999 Q ss_pred CCCcCHHHHHHHHHHH---------hccCChHHHHHhC------CCCC--CH--------HHHHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 417 NKVANTELQVQTAQQS---------MGIVSHETVLENH------PFVE--DL--------QAELERIEQEQTEYNKQLPN 471 (492) Q Consensus 417 ~~p~d~~e~~~~~~k~---------~g~vs~et~l~~l------~~v~--D~--------~~E~~ri~~E~~~~~~~~~~ 471 (492) --..+..|.|+.-.|- .|+|+......+| ++.. |. +.++.-.. .-.++ T Consensus 461 L~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~-------~~~~~ 533 (695) T protein:vir:36 461 LRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVL-------TYVQR 533 (695) T ss_pred CCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhH-------hhhcC Confidence 9888999988875432 3666665555553 2210 10 11111100 00000 Q ss_pred ccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 472 LDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~e 492 (492) ...++..+.....+++...+- T Consensus 534 ~~~~~~~~~~~~~~~g~~~~~ 554 (695) T protein:vir:36 534 LAEGGDTGAPGGARAGATAPP 554 (695) T ss_pred cccccccCCCCcccccccCCC Confidence 000000000000111100000 No 215 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=96.09 E-value=0.001 Score=37.00 Aligned_cols=413 Identities=10% Similarity=0.047 Sum_probs=154.6 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~ 80 (492) ||.-. .|..+.+......... .++.. ..+.+. . ......-+ |.+++..-+ T Consensus 34 ~~~~~--------------~p~~~~~~~~~~~~~~----~d~~~--~~~~r~--------g-~~~~~~~~-g~~~~~epp 83 (648) T protein:vir:79 34 MQLGE--------------APGAMPKGGGGGGSAK----RDPKM--SLVKRI--------G-LAIMDGGG-GGRDFEEPE 83 (648) T ss_pred cccCC--------------CccccCCCCccccccc----ccchh--HHHHHh--------H-HHHHhhcC-CccccccCC Confidence 33211 1111111111111000 00000 000000 0 00000111 111111100 Q ss_pred ccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCchhH-HHH---HHHHHhc---cHHHHHHHHHHHHHh Q lcl|Aclame:pro 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEV-VKR---IDEVLGN---RFDDKLHSVLTGASN 153 (492) Q Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~-~~~---l~~~~~n---~~~~~~~~~~~~~~~ 153 (492) ... .. ..+. .-..++....|+..+.-+.+-|+.+...++.. ... +....-| ....+...+..+.+. T Consensus 84 ~d~-~~----l~~l--~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll 156 (648) T protein:vir:79 84 FDF-NE----ITSA--YNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVK 156 (648) T ss_pred cCH-HH----HHHH--HhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHh Confidence 000 00 0000 00123444556666666666665554433211 110 0011112 345667778889999 Q ss_pred cCeEEEEEEeCCCCceEE----------------EEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEE Q lcl|Aclame:pro 154 KGIEWLHPYLDEEGEFKL----------------FRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYY 217 (492) Q Consensus 154 ~G~~~~~v~~d~~g~~~i----------------~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 217 (492) +|.||+.+-++.+|.+-. ..++|..+.+..++ .+ .+..| T Consensus 157 ~GNAYveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~----------------~g---------~~~~Y 211 (648) T protein:vir:79 157 YCNVVIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDK----------------FG---------MIKGW 211 (648) T ss_pred cCCeEEEEEecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcC----------------CC---------ceeee Confidence 999999999988874311 11222222222211 00 11112 Q ss_pred EEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE Q lcl|Aclame:pro 218 VYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV 292 (492) Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~ 292 (492) .+.... +. ....|..=.|++++ +...|.|.+......++....+.....+.+...+.|-.+ T Consensus 212 ~y~~~g---------~~-----~~~~~~~~dIIHik~~~~~d~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gi 277 (648) T protein:vir:79 212 QQEQEG---------QD-----KPQKFKPEDIVHIYYKREKGRAFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWH 277 (648) T ss_pred EEEecC---------Cc-----eeEEecCccEEEEccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEE Confidence 111000 00 00001011244443 223588888877777766666555556666767777666 Q ss_pred Eec-CCcccchhhH---Hhhh-hccceecCCC-Ccceeeecc--cC--HHHHHHHHHHHHHHHHHHhCCCCCCccccc-- Q lcl|Aclame:pro 293 LKN-YDDQELPEFK---RLLR-YYGAIKVSDN-GGVDTIQVE--VP--VENSKKYLDELYQKIMLFGQAVDFSSDKFG-- 360 (492) Q Consensus 293 ~~g-~~~~~~~~~~---~~~~-~~~~~~~~~~-~d~~~l~~~--~~--~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-- 360 (492) +.- .+....+... .... ......+.++ .+.+.+..+ .. ...+....+..++.|+..-++|.+-.+..+ T Consensus 278 l~~~~~~~~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~s 357 (648) T protein:vir:79 278 VKVGLEQEGFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGGTA 357 (648) T ss_pred EEeCCCccchHHHHHHHHHHHHhcccccccccccccceeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCCCc Confidence 542 2221111111 1111 1122222222 122222211 12 223555667777888888888876543222 Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHH--hc Q lcl|Aclame:pro 361 SAPSGVALEFLYTNLNLKADKLARKAKVAIQEL-LWFVF---EHFDIKGEHKDVDISFNYNKVANTELQVQTAQQS--MG 434 (492) Q Consensus 361 ~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~-~~li~---~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g 434 (492) +...+.+....+... +.-.+..+...+... .+.++ .+.........+++.|++....|....++.+.++ .| T Consensus 358 s~stae~~~~~~~~~---i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~G 434 (648) T protein:vir:79 358 SRSTGDNLSSDFKDR---IKALQKVMATFINEFMVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHN 434 (648) T ss_pred cchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccccccceEEEeecccchhhHHHHHHHHHHHHhCC Confidence 112233333222211 111122222222211 11111 0111111123467788887788888888888775 58 Q ss_pred cCChHHHHHhCCC--CCCHHH--HHH----HHHHHHHH-HHHhhccccC--CCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 435 IVSHETVLENHPF--VEDLQA--ELE----RIEQEQTE-YNKQLPNLDD--GGADSAQQQERSNNKESE 492 (492) Q Consensus 435 ~vs~et~l~~l~~--v~D~~~--E~~----ri~~E~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~e 492 (492) ++|...+.++++. +++... .+. ....+..+ ..+..+.... +....+...+..+++.++ T Consensus 435 ilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~~e~~~~~~~~ 503 (648) T protein:vir:79 435 AISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSASASGDKKKKATDNKTKPT 503 (648) T ss_pred CcCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCCCCCCCCCccccccccccCCCCCCC Confidence 9999999888753 222111 110 00000000 0000000000 000000011111111111 No 216 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=95.89 E-value=0.00031 Score=39.79 Aligned_cols=179 Identities=11% Similarity=0.105 Sum_probs=88.5 Q ss_pred eEEEecCCc---ccchhhHHhh------h-hccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccc- Q lcl|Aclame:pro 290 TYVLKNYDD---QELPEFKRLL------R-YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDK- 358 (492) Q Consensus 290 ~l~~~g~~~---~~~~~~~~~~------~-~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~- 358 (492) .+.+.|... .........+ + ...++.+.++. -+|-..+.+..++...+..+...|...+++|-.-+-+ T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ld~~~-e~~e~~~~~lsGl~d~l~~~~~~iaa~s~iP~t~LfG~ 79 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQVDNNSGVGQAIGIDADS-EEYNVLNSDIGGIDTFLSQKFDRIVALSGIHEIILKGK 79 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHHHHhhhhhhhheeecCC-cceeeeecCcCChHHHHHHHHHHHHhHhcCchhhhcCC Confidence 222222100 0011111111 1 11222233332 2466677888899999999999999999999643221 Q ss_pred -c-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHh--- Q lcl|Aclame:pro 359 -F-GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--- 433 (492) Q Consensus 359 -~-~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--- 433 (492) - |=|.||..=..-|...+. ...++.+...+++++++++ . ..++.+.|++-...+..+.|+...+.+ T Consensus 80 sp~Glnatge~d~~nyyd~i~--~~Qe~~l~p~le~l~~~~~----~---~~~~~~~f~pL~~~s~kekAei~~~~a~a~ 150 (201) T protein:vir:10 80 NVGGVSASQNTALETFYGYVD--RKRKAELLPLLEFLLPFIV----T---EQEWSVEFNPLSQVSDKDKSEILEKNVNSV 150 (201) T ss_pred CCccccccchhHHHHHHHHHH--HHHHHHHHHHHHHHHHhhc----C---CCCceEeeCCCCCCCHHHHHHHHHHHHHHH Confidence 1 224577655444444433 2335678888888887643 2 246789999999999999988776543 Q ss_pred ------ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 434 ------GIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 434 ------g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) |++|.+.+.+ ++.+........ ........+..++.+..+..+++ T Consensus 151 ~~~~~~g~i~~~e~r~-------------~L~~~~~~~~~~-~~~~~~~~~~~e~~dp~~~~~~~ 201 (201) T protein:vir:10 151 AALIAAGIIDADEARD-------------TLRAISTEVKIG-EGSIQTEVVINESEDPLDVSANN 201 (201) T ss_pred HHHHHcCCCCHHHHHH-------------HHHhcCCcCCCC-CCCCCccccccccCCCCCCCCCC Confidence 3444444333 222221000000 00000011111112222222222 No 217 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=95.46 E-value=0.002 Score=35.35 Aligned_cols=393 Identities=10% Similarity=-0.016 Sum_probs=160.4 Q ss_pred HHHHHhcCCc---eeccCCCcHHHHHHHHhh-------cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Q lcl|Aclame:pro 10 VAQALIKGGN---ILYPSQPTQTEIFDAIVR-------TNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE 79 (492) Q Consensus 10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~ 79 (492) .||+..|... ++-.-+++..-.+..... .+-.+..+..+|+. . ..+..+.+..+ T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~-----~---~~~~ly~~m~~-------- 64 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQG-----K---DGLLVYHKMLS-------- 64 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhcc-----c---cchHHHHHHhh-------- Confidence 5666666432 122222221111111110 00011111111110 0 00111111111 Q ss_pred cccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCCc--h---hHHHHHHHHHhc--------cHHHHHHH Q lcl|Aclame:pro 80 PKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTD--D---EVVKRIDEVLGN--------RFDDKLHS 146 (492) Q Consensus 80 ~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d--~---~~~~~l~~~~~n--------~~~~~~~~ 146 (492) .....-++.+....+.+.+..+.+.+ + ...+.+..+... +|... .. T Consensus 65 --------------------D~hi~s~l~~Rk~av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~-~~ 123 (448) T protein:vir:79 65 --------------------DGTVKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRL-FA 123 (448) T ss_pred --------------------ChHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHH-HH Confidence 12334455666666777887776422 2 123334444332 23333 33 Q ss_pred HHHHHHhcCeEE-EEEEe-CCCCceEEEEE---cccce-EEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEe Q lcl|Aclame:pro 147 VLTGASNKGIEW-LHPYL-DEEGEFKLFRV---PAEQG-IPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYE 220 (492) Q Consensus 147 ~~~~~~~~G~~~-~~v~~-d~~g~~~i~~~---~p~~~-~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (492) -..++.-||.++ +++|. ..+|...+..+ +|+.. .-.|+... .+.. .+ .. T Consensus 124 ~~lda~~~G~s~~Eivw~~~~~g~~~~~~l~~r~~~~~~~f~~~~d~--~l~~---------------~~--------~~ 178 (448) T protein:vir:79 124 IYENAYIYGMAAGEIVLTLGADGKLILDKIVPIHPFNIDEVLYDEEG--GPKA---------------LK--------LS 178 (448) T ss_pred HHHHhhhhcceeEEEEeeecCCCceecccccccCCccccceeeecCC--ceEE---------------ee--------cC Confidence 345678888865 56674 45676543322 22211 11122111 1110 00 00 Q ss_pred cceeeeccccccccccccceeccCCccceEeecC----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC Q lcl|Aclame:pro 221 NGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY 296 (492) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~ 296 (492) .. . ..........+-+++.+ +.+.+ ++.|.|.+..+.-.---=+..+.+.+.-++.|..|+.+.+-. T Consensus 179 ~~-~------~~~~~~~~~~~lP~~~~--i~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vgky~ 249 (448) T protein:vir:79 179 GE-V------KGGSQFVSGLEIPIWKT--VVFLHNDDGSFTGQSALRAAVPHWLAKRALILLINHGLERFMIGVPTLTIP 249 (448) T ss_pred Cc-c------cccccCCCccccccceE--EEEecCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC Confidence 00 0 00000001112233332 33322 456778887765544455566778899999999999998843 Q ss_pred ---Ccc--cchhhHH---hhh--hccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHH Q lcl|Aclame:pro 297 ---DDQ--ELPEFKR---LLR--YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGV 366 (492) Q Consensus 297 ---~~~--~~~~~~~---~~~--~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~ 366 (492) +.+ +...... ++. ...+..++++.++++++...+...+..+++...+.|...--.--++.+..+|. +.. T Consensus 250 ~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~g~-~~~ 328 (448) T protein:vir:79 250 KSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARALGIDFNTVQLNMGV-QAI 328 (448) T ss_pred CCCCcCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCcccHHHHHHHHHHHHHHHHhhhhhccccccch-hhh Confidence 221 1111111 121 22345578888999998776655666788888777755432221222222221 112 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHhccCChHHHHHhC Q lcl|Aclame:pro 367 ALEFLYTNLNLKADKLARKAKVAIQE-LLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSMGIVSHETVLENH 445 (492) Q Consensus 367 Al~~~~~~l~~k~~~~~~~~~~~l~~-~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~g~vs~et~l~~l 445 (492) +......-....+..-.+.+...+.+ +++-++.+ +......-..+.|....+.|..+.++.+.++++... T Consensus 329 ~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~l-Nfg~~~~~P~~~f~~~e~~Dl~~~a~~~~~l~~~~~-------- 399 (448) T protein:vir:79 329 NIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLP-NWPSATRFPRLTFEMEERNDFSAAANLMGMLINAVK-------- 399 (448) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCCCcEEEecCCChHHHHHHHHHhhhhhccch-------- Confidence 22211111112222333444555543 44444332 221222234678888888888888888888765421 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 446 PFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 446 ~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) + .+.+..++-..-+. .+.....+.........+.+.+. T Consensus 400 ----~----~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~~~~~ 437 (448) T protein:vir:79 400 ----D----SEDIPTELKALIDA-LPSKMRRALGVVDEVREAVRQPA 437 (448) T ss_pred ----h----hHHHHHHhhcCCCC-CCCccccccCCCCcccccccCCc Confidence 1 11111111000000 00000000001111111111111 No 218 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=95.14 E-value=0.0027 Score=34.69 Aligned_cols=417 Identities=9% Similarity=0.034 Sum_probs=175.7 Q ss_pred ChhhhH--------HHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 1 MQFIQL--------ISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQ 72 (492) Q Consensus 1 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G 72 (492) ..-+.. --.+||.|--.+ --|+|.+..-....+..+..... -+ .||.| T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--------------------~l-~~~~~ 107 (698) T protein:vir:10 52 LNALDAAPVAEPSPSLRLARQFEVDV---SNYTPRERRAASYALDFNGTSMD--------------------AL-SFVTS 107 (698) T ss_pred ccccccccccCCCccccccccceecc---ccCCccccchhhhhhcccccccc--------------------cc-hhhhc Confidence 000000 001111121111 11222111111111111100000 00 12222 Q ss_pred CCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee-------------------cC-CchhHHHHH Q lcl|Aclame:pro 73 RPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF-------------------KH-TDDEVVKRI 132 (492) Q Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~-------------------~~-~d~~~~~~l 132 (492) -.-+-+..- +... .++-.+.++.+.+..+.-+-+.. .. .+.+..+.| T Consensus 108 ~~F~Gy~~l------a~la-------Q~~eyr~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L 174 (698) T protein:vir:10 108 SGFPGFPTL------VLLA-------QLPEYRAMHEVLADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQI 174 (698) T ss_pred cCcchHHHH------HHHh-------hccchhhHHHHHHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHH Confidence 110000000 0000 00111122222222222111111 11 122333444 Q ss_pred H-HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCc----e--------------EEEEEcccceEEEecCCCCCceEE Q lcl|Aclame:pro 133 D-EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGE----F--------------KLFRVPAEQGIPIWTDKEHEELEA 193 (492) Q Consensus 133 ~-~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~----~--------------~i~~~~p~~~~~i~d~~~~~~~~~ 193 (492) . .+..=+....+.+..+.+-.||.+..++-.+.++. | -+.+++|.++.|-.- ....+.. T Consensus 175 ~~e~erl~V~~~l~eai~~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~--n~~dP~s 252 (698) T protein:vir:10 175 NDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNY--NSINPVA 252 (698) T ss_pred HHHHHHHHHHHHHHHHHHhcccccceEEEEEeecCccccccccccccccccCccceeeeeecccccccchh--hhccchh Confidence 3 33334677889999999999999987776544331 1 144455555544110 0000000 Q ss_pred EEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCC--ccceEe-ecCccCCCCcHHHHHHHHH Q lcl|Aclame:pro 194 FIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWG--KIPFIP-FKNNDLEISDIFMYKTLID 270 (492) Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~iPvv~-~~nn~~~~s~~~~v~~liD 270 (492) -.+|.+. .|++ .+..+ + ...-+.+- .+|-.- -.++.+|.|....+.+-++ T Consensus 253 ------------pdfgkP~--~y~V-~G~~I-----------H-~SRL~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~ 305 (698) T protein:vir:10 253 ------------DDFYKPS--TWWM-IGSEV-----------H-ATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYID 305 (698) T ss_pred ------------hccCCCc--eEEE-eccee-----------c-ceeEEEecCCCchhhhcchhccCCccHHHHHHHHHH Confidence 0111111 1111 11100 0 00001111 112111 1124568888888888888 Q ss_pred HHHHHHHHHHHHHHhcCCceEE-----EecCCcc-cchh---hHHhhh-hccceecCCCCcceeeecccCHHHHHHHHHH Q lcl|Aclame:pro 271 AYNRRLSDLSNTFKDSNELTYV-----LKNYDDQ-ELPE---FKRLLR-YYGAIKVSDNGGVDTIQVEVPVENSKKYLDE 340 (492) Q Consensus 271 ~~~~~~s~~~~~~~~~~~~~l~-----~~g~~~~-~~~~---~~~~~~-~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~ 340 (492) +++++.-.....+..+....+. +.+...+ .... .....+ ..+++.++++. =+|.+.+.+...+...+.+ T Consensus 306 ~~~rT~~~v~~Li~~~~~~~l~~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~-Eefeq~st~lSGLddVi~q 384 (698) T protein:vir:10 306 NWLRTRQSVSDIVKQFSVSGILMDLAQALTPGANVDLSMRAELINRYRDNRNILFLDKAT-EEFFQFNTPLSGLDALQAQ 384 (698) T ss_pred HHHHHhhhHHHHHHHhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCccceEEEecCC-cceEEEecCcCCHHHHHHH Confidence 8887766655555433332221 0011111 1111 111122 23344454322 3677778899999999999 Q ss_pred HHHHHHHHhCCCCCCcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCcceeeeEEeCC Q lcl|Aclame:pro 341 LYQKIMLFGQAVDFSSDKF---GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH-FDIKGEHKDVDISFNY 416 (492) Q Consensus 341 l~~~i~~~a~~p~~~~~~~---~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~-~~~~~~~~~i~i~f~~ 416 (492) ....|...+++|-.-+... |=|.||++=..-|...+. ...++.+...+++++.++... +|.. +. ++.+.|++ T Consensus 385 f~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~--s~Qe~~L~p~L~rl~~ii~rS~~G~i-dp-~i~~~fnP 460 (698) T protein:vir:10 385 AQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVR--AYQRNALQQLMNDVIVMIQLSLFGAV-DP-SIKWQWNA 460 (698) T ss_pred HHHHHHhhhcCchhhhhccCCcccCccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCC-CC-cceEEeCC Confidence 9999999999997544322 236788876666665544 455889999999999987644 3443 32 58899999 Q ss_pred CCCcCHHHHHHHHHHH---------hccCChHHHHHhC------CCC--CCHHHHH-----HHHHHHHHHHHHhhccccC Q lcl|Aclame:pro 417 NKVANTELQVQTAQQS---------MGIVSHETVLENH------PFV--EDLQAEL-----ERIEQEQTEYNKQLPNLDD 474 (492) Q Consensus 417 ~~p~d~~e~~~~~~k~---------~g~vs~et~l~~l------~~v--~D~~~E~-----~ri~~E~~~~~~~~~~~~~ 474 (492) --..+..|.|+.-.|- .|+|+......+| +|. .|+..+- ..++.+. ...+.... T Consensus 461 L~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~~----~~~~~~~~ 536 (698) T protein:vir:10 461 LRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGVL----TYVQRMAE 536 (698) T ss_pred CCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHHH----hhhcCCcC Confidence 9888999988875432 3666665555544 121 1111110 1111111 11111111 Q ss_pred CCCCCCCcC---CCCCCCCCC Q lcl|Aclame:pro 475 GGADSAQQQ---ERSNNKESE 492 (492) Q Consensus 475 ~~~~~~~~~---~~~~~~~~e 492 (492) ++...+.+. ...+...+- T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~ 557 (698) T protein:vir:10 537 GGDTGAPTAPGGARAGATAPP 557 (698) T ss_pred CCCcccccccccccCCCCCCc Confidence 111111111 111111111 No 219 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=94.99 E-value=0.003 Score=34.41 Aligned_cols=422 Identities=11% Similarity=0.079 Sum_probs=178.0 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccccccccccccccccccccch Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNF 102 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~ 102 (492) +-+.+++.. +. ..+.+.+.+..... |.+....++++++=--+ +.-... + ..+...|+..+- T Consensus 1 ~~~~~~~~~------~~----~~~~l~~r~~~L~~~R~~~e~~w~e~a~~~lP--~~~~~~-~-----~~~~~~~~~dst 62 (516) T protein:vir:10 1 MKQSTDLEY------GG----KRSKIPKLWEKFSTKRSSFLDRAKHYSKLTLP--YLMNDK-G-----DNETSQNGWQGV 62 (516) T ss_pred CCchhhHhh------hh----HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcc--cccCCC-C-----Ccccccccccch Confidence 222222222 11 22344444444433 32333334443322111 110000 0 011222466677 Q ss_pred HHHHHHHHHHhhhcC--C-----eeecCCch-------------hHHHHHH--------HHHhccHHHHHHHHHHHHHhc Q lcl|Aclame:pro 103 HANLVDQKVSYIVGK--P-----IAFKHTDD-------------EVVKRID--------EVLGNRFDDKLHSVLTGASNK 154 (492) Q Consensus 103 ~~~ivd~~~~~l~g~--~-----~~~~~~d~-------------~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~ 154 (492) +...++.+++-|++- | +++...+. ++.+.+. .+..++|.....++.++...+ T Consensus 63 g~~a~~~LAa~l~~~ltpp~~~WF~L~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~ 142 (516) T protein:vir:10 63 GAQATNHLANKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVA 142 (516) T ss_pred HHHHHHHHHHHHHhhhcCCCCccccccCChhhHhhhhccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH Confidence 777888887777542 2 23332221 1222222 233468889999999999999 Q ss_pred CeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeee----------------------ccceeEEEEecc Q lcl|Aclame:pro 155 GIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKL----------------------ENETKVEYWDKV 212 (492) Q Consensus 155 G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~----------------------~~~~~~~~~~~~ 212 (492) |.|. +|.|+++.+ +.++-.+ |.+-.|. .+.+...++.... +....+++|+.. T Consensus 143 G~a~--l~~d~~~~~--~~~pl~~-y~v~~d~-~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~i~t~v 216 (516) T protein:vir:10 143 GSCM--LYKPSKGAI--SAIPMHH-YVVNRDT-NGDLLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDSIKLYTHA 216 (516) T ss_pred CeEe--EEecCCCCe--EEEEcCe-EEEeeCC-CCCeEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCceEEEEEE Confidence 9985 455776654 4444444 4444443 4455444443221 011223333211 Q ss_pred eEEEEEEecceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 213 TVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSN 287 (492) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~ 287 (492) . + ...+......... +.........+|..+|++.+. .+.+|+|-.+...+-+..++.+.-.......... T Consensus 217 ~---~-~~~~~~~~~~~~d-~~~~~~~s~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~~~l~~~~~a~ 291 (516) T protein:vir:10 217 K---Y-LGEGFWELKQSAD-DIPVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSEAVARGAALMA 291 (516) T ss_pred E---e-cCCCceEEEEeeC-ceeeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHHHHHHHHHHhc Confidence 0 0 0111111111111 011111122335567776653 3467999999999999999988877777777777 Q ss_pred CceEEEecCCcccchhhHHhhhhccceecCCCCcceeee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhH Q lcl|Aclame:pro 288 ELTYVLKNYDDQELPEFKRLLRYYGAIKVSDNGGVDTIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSG 365 (492) Q Consensus 288 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg 365 (492) .|.+.+.-........... ... +.+..+..++++.+. +..+.......++.++..|...-....+.. ..+...++ T Consensus 292 ~~~~lv~p~g~~~~~~l~~-~~~-g~~~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~~l~~-rd~~rvTA 368 (516) T protein:vir:10 292 DIKYLIRPGAQTDVDHFVN-SGT-GEVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMMETMTR-RDAERVTA 368 (516) T ss_pred CCCcccCcccccchhhhcc-CCC-ceeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHhhhhhhc-cCCccccH Confidence 7777653211111111111 111 233334445566554 234567777778877777744222111111 11223455 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhc-cCCcceeeeEEeCCCCCcCHHHHHHHHHH---- Q lcl|Aclame:pro 366 VALEFLYTNLNLKADKLARKAKVAIQELLWF---------VFEHFD-IKGEHKDVDISFNYNKVANTELQVQTAQQ---- 431 (492) Q Consensus 366 ~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~l---------i~~~~~-~~~~~~~i~i~f~~~~p~d~~e~~~~~~k---- 431 (492) ..+.. +..+++..++..+.++-.= +..++. .+.....+++ ..+.+.+..++.+.. T Consensus 369 tEV~~-------r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~~~p~~P~~lv~~~~----v~~i~~L~raq~~~~i~~~ 437 (516) T protein:vir:10 369 VEIQR-------DALEIEQNMGGVYSLFATTMQSPVAMWGLLEAGDSFTSDLVDPVI----ITGIEALGRMAELDKLANF 437 (516) T ss_pred HHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCChhhcCcce----ehhHHHHHHHHHHHHHHHH Confidence 55544 3444455555555443211 111111 1111111211 122222222222211 Q ss_pred ------HhccCC-----------hHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHhhccccCCCC--CCCCcCCCCCCC Q lcl|Aclame:pro 432 ------SMGIVS-----------HETVLENHPF---VEDLQAELERIEQEQTEYNKQLPNLDDGGA--DSAQQQERSNNK 489 (492) Q Consensus 432 ------~~g~vs-----------~et~l~~l~~---v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 489 (492) ++++-+ .+.+...++- +=-.++|++.+.+++++..+..+...+.+. ++.-.++-.+ T Consensus 438 ~q~i~~~~q~~p~v~d~id~d~~~~~~a~~~gvp~~~irs~eev~~~r~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~-- 515 (516) T protein:vir:10 438 AQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMEQEQEAQMQAQQAQMLEEGVAKAVPGVIQQELKE-- 515 (516) T ss_pred HHHHHHHhcCChHHHhhcCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhc-- Confidence 111111 1222233321 112356777766665443333222111111 0000000000 Q ss_pred CC Q lcl|Aclame:pro 490 ES 491 (492) Q Consensus 490 ~~ 491 (492) + T Consensus 516 -~ 516 (516) T protein:vir:10 516 -A 516 (516) T ss_pred -C Confidence 0 No 220 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=94.90 E-value=0.0032 Score=34.25 Aligned_cols=373 Identities=10% Similarity=0.020 Sum_probs=154.3 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC-- Q lcl|Aclame:pro 47 EMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH-- 123 (492) Q Consensus 47 ~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~-- 123 (492) .++.+....... ..+.-.-+.....|-.. . ...... -+..-+.+.-....|+.+++-+.+-|+.+-- T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----s--~~~~~v---~~~~al~~~~v~~cv~~ia~~ia~lp~~~~~~~ 70 (419) T protein:vir:80 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSAR-----S--EAGQVV---TPASALSLTVLQNCVTLLAESIAQLPVELYERS 70 (419) T ss_pred CCcccccccccCcCCCCcchhhHHhhcccc-----c--ccCccc---ChHHhhccHHHHHHHHHHHHhhccCceEEEEec Confidence 111111000000 00000000000111000 0 000000 0001112233444677777777777776521 Q ss_pred -Cchh---HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEcccceEEEecCCCCCceEE Q lcl|Aclame:pro 124 -TDDE---VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHEELEA 193 (492) Q Consensus 124 -~d~~---~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~ 193 (492) +... .......+.. | ....+...+..+.+.+|.||+++.++..|++. +..++|..+.+..+.. ..+. T Consensus 71 ~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~--~~~~- 147 (419) T protein:vir:80 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPD--LKPM- 147 (419) T ss_pred CCCcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCC--ceEE- Confidence 1110 1112222321 3 23456667788899999999999999988864 7888888877665432 1111 Q ss_pred EEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----CccCCCCcHHHHHHHH Q lcl|Aclame:pro 194 FIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----NNDLEISDIFMYKTLI 269 (492) Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~~~s~~~~v~~li 269 (492) |. ...... ... .. |++++ +...|.|.+......+ T Consensus 148 ----y~-------------------~~~~~~-----------~~~------~~--i~h~~~~~~d~~~G~s~i~~~~~~i 185 (419) T protein:vir:80 148 ----YR-------------------VAGADP-----------LPQ------RL--VHHVRWMSINGYTGLSPVLLHANAI 185 (419) T ss_pred ----EE-------------------EcCccc-----------cch------hh--eEEecCCCCCCcccccHHHHHHHHH Confidence 11 100000 000 00 12222 1235777777666666 Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEe--cCC-c----ccchhhHHhh--------hhccceecCCCCcceeeecccCHHHH Q lcl|Aclame:pro 270 DAYNRRLSDLSNTFKDSNELTYVLK--NYD-D----QELPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVPVENS 334 (492) Q Consensus 270 D~~~~~~s~~~~~~~~~~~~~l~~~--g~~-~----~~~~~~~~~~--------~~~~~~~~~~~~d~~~l~~~~~~~~~ 334 (492) +....+..-..+.+...+.|-.+++ +.. . +..+.++..+ ..++++.++++.+++-+........+ T Consensus 186 ~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~ 265 (419) T protein:vir:80 186 GHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAAL 265 (419) T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHH Confidence 6555554444455556666665554 211 1 1111222211 12345666665555555433334445 Q ss_pred HHHHHHHHHHHHHHhCCCCCCccccc-cchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceee Q lcl|Aclame:pro 335 KKYLDELYQKIMLFGQAVDFSSDKFG-SAPSG---VALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDV 410 (492) Q Consensus 335 ~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg---~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i 410 (492) .+..+..++.|+..=++|..-.+... ++-|+ ..+.+....+.-.+. .+...+.+ .+ +.........+ T Consensus 266 ~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~~~f~~~~l~P~~~----~ie~~l~~---kl--l~~~~~~~~~i 336 (419) T protein:vir:80 266 IDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVK----RHEQAKTR---DL--LLPSERKQYFI 336 (419) T ss_pred HHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHH----HHHHHHhh---hc--cCccccCCeEE Confidence 56667777888887788764433221 11111 111111111111111 11111111 00 01111112234 Q ss_pred eEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCC Q lcl|Aclame:pro 411 DISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERS 486 (492) Q Consensus 411 ~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (492) ++.+...+..|..+.++.+.++ .|+++...++++++. +++-+.-+ + ................+.+.. T Consensus 337 ~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~~~--~-------~~n~~~~~~~~~~~~~~~~~~ 407 (419) T protein:vir:80 337 EYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYL--S-------PMNMVDASKPQPIPMGKTEPT 407 (419) T ss_pred EEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceee--e-------ccccccccccccccCCCCCch Confidence 4445566677899999988877 588998888887753 12111000 0 000000000010001111111 Q ss_pred CCCCCC Q lcl|Aclame:pro 487 NNKESE 492 (492) Q Consensus 487 ~~~~~e 492 (492) ...-.| T Consensus 408 ~~~~~~ 413 (419) T protein:vir:80 408 KAALDE 413 (419) T ss_pred hhhHHH Confidence 111111 No 221 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=94.78 E-value=0.0035 Score=34.03 Aligned_cols=369 Identities=8% Similarity=-0.035 Sum_probs=155.4 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~ 122 (492) +.+-..+.+.-.+.. .........++.+..... .. ...... =...+....+|+..++-+..-|+.+- T Consensus 1 Mg~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~------~~~~~~---~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (406) T protein:vir:95 1 MGLFDRWRRTKRKSK--IRADTGYVGLFMSGEDVS--FL------VPGYVR---LSDNPEVRMAVHKIADLISSMTIYLM 67 (406) T ss_pred Ccchhhhcccccccc--ccccchhhhhhccCcccC--cc------ccCHHH---HhhcHHHHHHHHHHHHhhccCceEEE Confidence 222222111100000 000000111111110000 00 000000 01235566678888888877777651 Q ss_pred --CCch--h-HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEE--EEEeCCCCce-EEEEEcccceEEEecCCCCC Q lcl|Aclame:pro 123 --HTDD--E-VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWL--HPYLDEEGEF-KLFRVPAEQGIPIWTDKEHE 189 (492) Q Consensus 123 --~~d~--~-~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~--~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~ 189 (492) .++. . .......++. | ....+...+..+.+.+|.|+. .+-++..|.+ .+..++|..+-++.+... T Consensus 68 ~~~~~~~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~-- 145 (406) T protein:vir:95 68 QNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDG-- 145 (406) T ss_pred EecCCcceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCe-- Confidence 1111 1 1112222322 2 345667777888888876654 4455666766 467788887776655320 Q ss_pred ceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCc------cCCCCcHH Q lcl|Aclame:pro 190 ELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN------DLEISDIF 263 (492) Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn------~~~~s~~~ 263 (492) .++. ... ..+... -|++++.+ -.|.|.++ T Consensus 146 -----~~~~-~~~----~~~~~~-----------------------------------evih~~~~~~~~~~~~G~s~i~ 180 (406) T protein:vir:95 146 -----YQVL-YGG----QTFNYD-----------------------------------EVLHFIYNPDPERPYIGRGYRV 180 (406) T ss_pred -----EEEE-ecc----EEEchh-----------------------------------HEEEeeccCCCCCCccccCHHH Confidence 0000 000 000000 12333311 13778777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEec---CCcccchhhHHhhh--------hccceecCCCC-cceeee-cccC Q lcl|Aclame:pro 264 MYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN---YDDQELPEFKRLLR--------YYGAIKVSDNG-GVDTIQ-VEVP 330 (492) Q Consensus 264 ~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~--------~~~~~~~~~~~-d~~~l~-~~~~ 330 (492) .....++....+..-..+.+...+.|-.++.- .+.+..+++...+. .++++.+..++ ..+-++ .... T Consensus 181 ~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~ 260 (406) T protein:vir:95 181 VLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAATAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLK 260 (406) T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHHhccccccCCceeecCCCccccccccCChh Confidence 77777766666655555666666666555443 22333333332221 12233444443 222222 1223 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcc Q lcl|Aclame:pro 331 VENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---KGEH 407 (492) Q Consensus 331 ~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~ 407 (492) ...+.+..+..+..|+..-++|..-.+. +++.+.... .....+|.-+++.+...+.. .... T Consensus 261 d~q~~e~~~~~~~~Ia~~fgVp~~~lg~-~~~~~~~~~---------------~~~~~~l~P~~~~ie~~l~~~l~~~~~ 324 (406) T protein:vir:95 261 DIAINEAVELDKRTVAGMFGVPAFLLGI-GEFNRDEYN---------------NFINSTILPIAKGIEQELTRKLLISPD 324 (406) T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHcCC-CCchHHHHH---------------HHHHHHHHHHHHHHHHHHHHhcCCCCC Confidence 3344566677777887777787644321 222222111 12233333333333322221 1112 Q ss_pred eeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCC Q lcl|Aclame:pro 408 KDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQER 485 (492) Q Consensus 408 ~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 485 (492) ..+++.++.-+..|..+.++.+.++ .|+++...++++++.-.. ...++..--.. ...+..........+.+. . T Consensus 325 ~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~--~~gd~~~~~~n--~~~~~~~~~~~~~k~g~~-~ 399 (406) T protein:vir:95 325 LYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPK--EGLSELVILEN--YIPLDKIGDQSKLKGGDN-S 399 (406) T ss_pred cEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--CCcceeeeccC--ccchhhcccccccCCCCC-C Confidence 3455556666777888999888877 478999999888764221 00111100000 000000000000000011 1 Q ss_pred CCCCCCC Q lcl|Aclame:pro 486 SNNKESE 492 (492) Q Consensus 486 ~~~~~~e 492 (492) .++.+.| T Consensus 400 ~~~~~~~ 406 (406) T protein:vir:95 400 GADGQTD 406 (406) T ss_pred CCCCCCC Confidence 1111111 No 222 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=94.60 E-value=0.004 Score=33.74 Aligned_cols=379 Identities=11% Similarity=0.052 Sum_probs=152.9 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--ccccc--------cccccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDI--VKEPK--------PVDATGAVDPLK 93 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i--~~~~~--------~~~~~~~~~~~~ 93 (492) +.| .-.+ ..+.+++..+....+. ..... ............ T Consensus 1 ~~~-------------~~~~-----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 50 (432) T protein:vir:97 1 MPD-------------EKKL-----------------GLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGA 50 (432) T ss_pred CCC-------------cccC-----------------chhhhhHhhcCCccccccccccccccCchhhhhhcccccccCc Confidence 111 0000 1111112222111100 00000 000000000000 Q ss_pred ---cccccccchHHHHHHHHHHhhhcCCeeec--CCc---hhH-HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 94 ---PDDRMITNFHANLVDQKVSYIVGKPIAFK--HTD---DEV-VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 94 ---~~~ri~~n~~~~ivd~~~~~l~g~~~~~~--~~d---~~~-~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~ 159 (492) ++.=+.+.=.-..|+..++-+-.-|+.+- ..+ ... ...+..+.. | ....+...+..+.+.+|.||+ T Consensus 51 ~v~~~~a~~~~aV~~~v~~Ia~~ia~lp~~~y~~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~ 130 (432) T protein:vir:97 51 AVNADAIMRLDAVAACVKLVSQAVAAMPLMMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYV 130 (432) T ss_pred ccchHhhhcchHHHHHHHHHHHhhccCceEEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEE Confidence 00001111223355555555555666541 111 111 112233322 3 234566677889999999999 Q ss_pred EEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeecccccccccccc Q lcl|Aclame:pro 160 HPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTH 238 (492) Q Consensus 160 ~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (492) ++..+ +|++ .+..++|..+.++.+.. +.+.+ ++ ...++..++ +.... T Consensus 131 ~~~~~-~g~~~~L~~l~p~~v~v~~~~~--g~~~y--~~-~~~~g~~~~-~~~~~------------------------- 178 (432) T protein:vir:97 131 RKVVT-DGRIESLQYLANDRLTITTDTK--GNTAY--RY-RRTDGQMID-IPRQQ------------------------- 178 (432) T ss_pred EEEec-CCcEEEEEEEcCcceEEEEcCC--CcEEE--EE-EecCceEEE-Ecccc------------------------- Confidence 98876 4665 46778898888876642 22221 11 111111110 01111 Q ss_pred ceeccCCccceEeec----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhh--- Q lcl|Aclame:pro 239 FSTGSWGKIPFIPFK----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLL--- 308 (492) Q Consensus 239 ~~~~~~g~iPvv~~~----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~--- 308 (492) |++++ +...|.|.++.....++....+..-..+.+...+.|-.++.-. +.+..+.+.... T Consensus 179 ----------iih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~ 248 (432) T protein:vir:97 179 ----------IWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYDSFSKKVSGS 248 (432) T ss_pred ----------EEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCCCCHHHHHHHHHHHhhh Confidence 11221 1224667666655555544444433444455555665554432 112222222221 Q ss_pred -hhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc--cchhHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 -RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG--SAPSGVALEFLYTNLNLKADKLARK 385 (492) Q Consensus 309 -~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~--~~~Sg~Al~~~~~~l~~k~~~~~~~ 385 (492) ..++++.++++.+.+.++.......+.+..+..+..|+..=++|..-.+... +...|..++.....+ T Consensus 249 ~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~~f---------- 318 (432) T protein:vir:97 249 VEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGF---------- 318 (432) T ss_pred hcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHHHH---------- Confidence 2345666666666555554434445556677777788887788765443221 111122222221111 Q ss_pred HHHHHHHHHHHHHHHh-----ccC-CcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHHHH Q lcl|Aclame:pro 386 AKVAIQELLWFVFEHF-----DIK-GEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQAEL 455 (492) Q Consensus 386 ~~~~l~~~~~li~~~~-----~~~-~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~E~ 455 (492) +..+|.-.++.+...+ ... .....+++.+..-+..|..+.++++.++. |+++.-.++++++. +++- ..+ T Consensus 319 ~~~tl~P~~~~ie~~ln~kLl~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~-~~~ 397 (432) T protein:vir:97 319 LTMTLSPWLRRIEQSIALNLLTPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGN-AAV 397 (432) T ss_pred HHHHHHHHHHHHHHHHhhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCC-cce Confidence 1112222222221111 111 11123444445566778999999988874 78999888887653 2210 000 Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCc-CCCCCCCCCC Q lcl|Aclame:pro 456 ERIEQEQTEYNKQLPNLDDGGADSAQQ-QERSNNKESE 492 (492) Q Consensus 456 ~ri~~E~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e 492 (492) -.+. ....+....+.....+ ....++++++ T Consensus 398 ~~~~-------~~~~pl~~~~~~~~~~~~~~~~~~~~~ 428 (432) T protein:vir:97 398 LTVQ-------SAMVPLDSIGLQASPEPASGLGNQQQD 428 (432) T ss_pred Eeec-------ccccchhhhcccCCCCCCCCCCCcccc Confidence 0000 0000011111111110 0111111111 No 223 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=94.45 E-value=0.0044 Score=33.52 Aligned_cols=369 Identities=9% Similarity=0.020 Sum_probs=156.3 Q ss_pred HHHHHHHHHHH-H-HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecC- Q lcl|Aclame:pro 47 EMIVRYIKQHL-E-KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH- 123 (492) Q Consensus 47 ~~l~~~i~~~~-~-~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~- 123 (492) .+..+...... . ....-..+....-+.. .. ........ .=+.+.-...+|+.+++-+..-|+.+-- T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~------s~--~~~~vt~~---~al~~~~v~~~v~~ia~~iA~lp~~~~~~ 69 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQMSAGGWVSALLGSSR------SD--SGQVVTPA---SALALTVLQNCVTLLAESIAQLPIELYER 69 (419) T ss_pred CcccccccccccccccCcchhhHHhhcCCC------cc--CCcccchH---HhhccHHHHHHHHHHHHhhccCceEEEEe Confidence 11111100000 0 0000000011110100 00 00000000 0011223445677777766666766521 Q ss_pred --Cch-h--HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEcccceEEEecCCCCCceE Q lcl|Aclame:pro 124 --TDD-E--VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHEELE 192 (492) Q Consensus 124 --~d~-~--~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-i~~~~p~~~~~i~d~~~~~~~~ 192 (492) +.. . .......+.. | ....+...+....+.+|.+|+++.++.+|.+. +..++|..+.+..+.. ..+. T Consensus 70 ~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~--~~~~ 147 (419) T protein:vir:14 70 SGEDRKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSD--LKPV 147 (419) T ss_pred cCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCC--ceEE Confidence 111 0 0112222321 3 23456666788899999999999999888864 7788888887665432 1111 Q ss_pred EEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----CccCCCCcHHHHHHH Q lcl|Aclame:pro 193 AFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----NNDLEISDIFMYKTL 268 (492) Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~~~s~~~~v~~l 268 (492) |. +....... ... |++++ +...|.|.+...... T Consensus 148 -----y~-------------------~~~~~~~~----------~~~---------i~h~~~~~~dg~~G~s~i~~~~~~ 184 (419) T protein:vir:14 148 -----YR-------------------VRGSDPMP----------QRL---------VHHVRWMSINGYTGLSPVLLHANA 184 (419) T ss_pred -----EE-------------------EccCcccc----------hhh---------eeEecCcCCCCcccccHHHHHHHH Confidence 11 00000000 000 11111 123577877777777 Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecC--C-----cccchhhHHhhh--------hccceecCCCCcceeeecccCHHH Q lcl|Aclame:pro 269 IDAYNRRLSDLSNTFKDSNELTYVLKNY--D-----DQELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVPVEN 333 (492) Q Consensus 269 iD~~~~~~s~~~~~~~~~~~~~l~~~g~--~-----~~~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~~~~~ 333 (492) ++....+..-..+.+...+.|-.++.-. . .+..+.++..+. .++++.++++.+++.+........ T Consensus 185 i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q 264 (419) T protein:vir:14 185 IGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAA 264 (419) T ss_pred HHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHH Confidence 7665555544555556666676555422 1 111122222211 134555655555554443323333 Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCC--c Q lcl|Aclame:pro 334 SKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKG--E 406 (492) Q Consensus 334 ~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~--~ 406 (492) +.+..+..+..|+..=++|..-.+... ++-|+ ++..... ....+|.=.++.+...++ ... . T Consensus 265 ~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~--~E~~~~~----------f~~~~L~P~~~~ie~~l~~kll~~~~~~ 332 (419) T protein:vir:14 265 LIDALRLSALDIARIYKIPAHMVNELERATFSN--IEHQSLQ----------FVIYTLLPWVKRHEQAKTRDLLLPSERK 332 (419) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhcCCCCCCccc--HHHHHHH----------HHHHHHHHHHHHHHHHHhhhccCccccC Confidence 445556667788777788765433221 12121 1111111 112222222222211111 111 1 Q ss_pred ceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCc Q lcl|Aclame:pro 407 HKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQ 482 (492) Q Consensus 407 ~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 482 (492) ...+++.+..-+..|..+.++++.++ .|+++.-.++++++.- ++-+.-+. ................+ T Consensus 333 ~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~---------~~n~~~~~~~~~~~~~~ 403 (419) T protein:vir:14 333 QYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLS---------PMNMVDASKPQQLPVGK 403 (419) T ss_pred CeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeee---------ccccccccccccccCCC Confidence 22344445566677899999999887 4789998888877532 11110000 00011111111111122 Q ss_pred CC--CCCCCCCC Q lcl|Aclame:pro 483 QE--RSNNKESE 492 (492) Q Consensus 483 ~~--~~~~~~~e 492 (492) .+ ..+.+++. T Consensus 404 ~~~~~~~~~e~~ 415 (419) T protein:vir:14 404 SEPTKAAIDEIG 415 (419) T ss_pred CCCccccccchh Confidence 22 22222222 No 224 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=94.34 E-value=0.0047 Score=33.35 Aligned_cols=433 Identities=15% Similarity=0.111 Sum_probs=168.2 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTN--NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVK 78 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~ 78 (492) -|..-+.-|=++-..++....-+-+-+-...+..-...+ .+.+...+-.. +-+.+|+.+-.+++-+..+ T Consensus 3 ~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~~~~e~~~~~~~-------eLI~~YR~ma~~pEvd~Av-- 73 (537) T protein:vir:10 3 QQLFGFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYSVDFDGTIRNDH-------ELITRYREMVLNPECDSAV-- 73 (537) T ss_pred cccccceeecccccccCCcccCCCcccccceeecccccccccccccccchHH-------HHHHHHHHHhhccchhhHH-- Confidence 111111111112222222211111100000000000000 00111111112 2233444444444433211 Q ss_pred ccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchh----HHHHH----HHHHh-ccHHHHHHHHH Q lcl|Aclame:pro 79 EPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDE----VVKRI----DEVLG-NRFDDKLHSVL 148 (492) Q Consensus 79 ~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~----~~~~l----~~~~~-n~~~~~~~~~~ 148 (492) ..||+. .+.-....|+.+..++.+ ..+.+ +.+.. =+|+....+.. T Consensus 74 -------------------------~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~f 128 (537) T protein:vir:10 74 -------------------------DDVVNETICGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLLDFDNRAYEIF 128 (537) T ss_pred -------------------------HHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHH Confidence 112221 111223345555444322 22222 22221 27788899999 Q ss_pred HHHHhcCeEEEEEEeCC----CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEeccee Q lcl|Aclame:pro 149 TGASNKGIEWLHPYLDE----EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSL 224 (492) Q Consensus 149 ~~~~~~G~~~~~v~~d~----~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (492) |.+.+.|+-|++...|. +|-..+..++|+.+..|..-.. .....++..... .++. .....+|.+..... T Consensus 129 R~WYVDgRi~fhKiid~k~pk~GI~ELr~lDPr~i~~vR~i~~--~~~~~~~~~~~~----~~v~-~~~~eyf~ynp~g~ 201 (537) T protein:vir:10 129 RRWYVDGRLFFHKVIDPKKPRQGLVELRYVDPRKIRKVTEYEA--KRPEALRTQDLN----QQLT-QQSASYFLYNPKGL 201 (537) T ss_pred hhheeeeEEEEEEEEeCCCccccceeeeeeCCccceeeEeecc--cCCccceEEecc----eeee-ecccceeeeccccc Confidence 99999999999998864 3767899999999877643111 111111111000 0000 01112222222111 Q ss_pred eeccccccccccccceeccCCccce--Eeec-------CccCCCCcHHHHHHHHHHHHHH--HHHHHHHHHhcCCceEEE Q lcl|Aclame:pro 225 IPDYSNNLENSKTHFSTGSWGKIPF--IPFK-------NNDLEISDIFMYKTLIDAYNRR--LSDLSNTFKDSNELTYVL 293 (492) Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~-------nn~~~~s~~~~v~~liD~~~~~--~s~~~~~~~~~~~~~l~~ 293 (492) ... ...+ =+||- |.|. |+....|-++. .+..+|++ +-|.+-.-+..+.|-.=+ T Consensus 202 ~~~--~~~~-----------vkI~~dAI~y~hSGl~d~n~~~i~syLhk---AiKp~NQLkm~EDAlVIYRitRAPeRRv 265 (537) T protein:vir:10 202 KNS--TNQG-----------MKIAPDSIAYCHSGIQDLNKNMVLSHLHK---AIKAVNQLRMIEDSLVIYRLSRAPERRI 265 (537) T ss_pred ccc--CCCc-----------eeccHhheeeecccceeCCCCeeeeeehh---hhHHHHhhHHHHhhHHHHhhhccccceE Confidence 100 0000 01111 1111 12223344443 22333322 233333444444443322 Q ss_pred ecCCcccchhhH-----H----hhhhccce--------------e------c--CCCCc-ceeeecccCH-HHHHHHHHH Q lcl|Aclame:pro 294 KNYDDQELPEFK-----R----LLRYYGAI--------------K------V--SDNGG-VDTIQVEVPV-ENSKKYLDE 340 (492) Q Consensus 294 ~g~~~~~~~~~~-----~----~~~~~~~~--------------~------~--~~~~d-~~~l~~~~~~-~~~~~~i~~ 340 (492) .-.+..+.++.+ + ..++..+. . + -+||. .+.-|.+... -+...-+.- T Consensus 266 FYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnlgem~DV~Y 345 (537) T protein:vir:10 266 FYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDFWLPRREGGRGTEISTLPGGQNLGELEDVKY 345 (537) T ss_pred EEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhhhhhcccccCCCcccceeeccccCCcChHHHHHH Confidence 211111111111 1 11100000 0 0 11222 2222333221 233445677 Q ss_pred HHHHHHHHhCCCCC--CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--Ccc----eeeeE Q lcl|Aclame:pro 341 LYQKIMLFGQAVDF--SSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK--GEH----KDVDI 412 (492) Q Consensus 341 l~~~i~~~a~~p~~--~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~--~~~----~~i~i 412 (492) +++.+|..-++|-- ..++..+.--|..|-.-+.....-+.+.+..|..-+.++++.=+-+-|+- .+| ..|.+ T Consensus 346 F~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~ 425 (537) T protein:vir:10 346 FQKKLYKALNVPSSRLETETTFNIGRAAEITRDEVKFQKFIARLRKRFSELFVDLLKTQLILKGICSIEEWEEMKEHIQF 425 (537) T ss_pred HHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceE Confidence 77888887777742 22211111122234444444556667777788888888776654444432 233 45778 Q ss_pred EeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHHHHHHh----hccccCC Q lcl|Aclame:pro 413 SFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIEQEQTEYNKQ----LPNLDDG 475 (492) Q Consensus 413 ~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~~~~~~----~~~~~~~ 475 (492) .|...-.-.+...++ ++..+ +| .+|.+++.+.+ -.++ +..++.++|++|..+..-. ......+ T Consensus 426 ~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr~tDeeI~~~~k~I~~E~k~~~~~~p~~~~~~~~~ 505 (537) T protein:vir:10 426 DFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLKQTESEIKEIDKEIKQEIADGVIMDPQAMQAMEMG 505 (537) T ss_pred EeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccCHHHHHHHHHHHHHHhhCCCCCCcccccccccC Confidence 886555444444433 33333 24 47999998864 4433 3567777888776542111 0001101 Q ss_pred CCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 476 GADSAQQQERSNNKESE 492 (492) Q Consensus 476 ~~~~~~~~~~~~~~~~e 492 (492) .++.. .-..+.+++| T Consensus 506 ~~~~~--~~~~~~~~~~ 520 (537) T protein:vir:10 506 IGDEE--PVPEGGEEPQ 520 (537) T ss_pred CCCcc--cCCCCCCCcc Confidence 00000 0011111111 No 225 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=94.22 E-value=0.005 Score=33.18 Aligned_cols=376 Identities=10% Similarity=0.002 Sum_probs=153.2 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-----------HHhcCCCc-cc----cccccccccccccccccccccccchHHHH Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQ-----------EYYEQRPD-IV----KEPKPVDATGAVDPLKPDDRMITNFHANL 106 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~-----------~YY~G~~~-i~----~~~~~~~~~~~~~~~~~~~ri~~n~~~~i 106 (492) +.+-.+++..-.....-.++.+-.. +.+.|-++ .+ ..... .+ .... ...-+.+.-...+ T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~g-~~v~---~~~al~~~~V~~c 75 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGEL-NG-GTGR---ETRALRNMAVLRC 75 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCcc-Cc-ceec---hhhhhccHHHHHH Confidence 3322222210000000001110000 00000000 00 00000 00 0000 0000112223445 Q ss_pred HHHHHHhhhcCCeeec-CCch---hH-HHHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcc Q lcl|Aclame:pro 107 VDQKVSYIVGKPIAFK-HTDD---EV-VKRIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPA 176 (492) Q Consensus 107 vd~~~~~l~g~~~~~~-~~d~---~~-~~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p 176 (492) |+.+++-+-.-|+.+- .++. .. ......+.. |. -..+...+..+++.+|.+|+++-++...-+.+..++| T Consensus 76 i~~Ia~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~g~~~~L~pl~~ 155 (431) T protein:vir:10 76 VTLISGTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSGNRPIRLIPMDR 155 (431) T ss_pred HHHHHHhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCceEEEEEEcC Confidence 6666666666676651 1111 01 112222221 32 2345667788999999999999888633345677788 Q ss_pred cceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec--- Q lcl|Aclame:pro 177 EQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK--- 253 (492) Q Consensus 177 ~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~--- 253 (492) ..+.+..++. +.+.+ .+....+..++ +.... |++++ T Consensus 156 ~~v~~~~~~~--~~~~y---~~~~~~g~~~~-~~~~d-----------------------------------ViHir~~~ 194 (431) T protein:vir:10 156 GSAKGRLTST--WQIVY---DYTTPTGDKIE-LPARE-----------------------------------VFHLRDLS 194 (431) T ss_pred ceeEEEEcCC--CeEEE---EEEeCCceEEE-Echhh-----------------------------------EEEecCcC Confidence 8877765532 22211 11111111100 01111 12221 Q ss_pred -CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecCCCCc Q lcl|Aclame:pro 254 -NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVSDNGG 321 (492) Q Consensus 254 -nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~d 321 (492) +...|.|.++-....+.....+..-..+.+...+.|-.++.-. +.+..+.++..+. .++++.++++.+ T Consensus 195 ~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~ 274 (431) T protein:vir:10 195 IDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEVPKELSDNAYGRMKASVQENHTGSENAGSWMLLEEGAT 274 (431) T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCce Confidence 2234677777666666555554444455556666665555432 2222233333221 234555666555 Q ss_pred ceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 322 VDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF 401 (492) Q Consensus 322 ~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~ 401 (492) .+.++.......+.+..+..+..|+..=++|..-.+... ..++..++.....+ ...+|.-.++.+...+ T Consensus 275 ~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~-~~t~sn~eq~~~~f----------~~~tL~P~~~~ie~~l 343 (431) T protein:vir:10 275 AKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDD-TSWGSGIEQLAIFF----------IQYGLSHWFVSWEQAA 343 (431) T ss_pred EEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCC-CCccccHHHHHHHH----------HHHHHHHHHHHHHHHH Confidence 555544334444555666667788887788865443221 11111122111111 1111222222221111 Q ss_pred c------cCCcceeeeEEeCCCCCcCHHHHHHHHHHHh--c----cCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 402 D------IKGEHKDVDISFNYNKVANTELQVQTAQQSM--G----IVSHETVLENHPF--VEDLQAELERIEQEQTEYNK 467 (492) Q Consensus 402 ~------~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g----~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~ 467 (492) + .......+++.+..-+..|..+.++.+.++. | +++.-.+.++++. ++++... + T Consensus 344 n~~Ll~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g~lT~NE~R~~~gl~p~~~~~gD--~---------- 411 (431) T protein:vir:10 344 ARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEVREMLDLPRADDPVAD--Q---------- 411 (431) T ss_pred HhhccChhhcCCceEEEechhhhccCHHHHHHHHHHHHhcccccCccCHHHHHHHhCCCCCCCcccc--c---------- Confidence 1 0111233555555667778999999888764 3 4788888777653 3332111 0 Q ss_pred hhccccCCCCCCCCcCCCCC Q lcl|Aclame:pro 468 QLPNLDDGGADSAQQQERSN 487 (492) Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~ 487 (492) ...+........+++...+- T Consensus 412 ~~~p~n~~~~~~~~~~p~~~ 431 (431) T protein:vir:10 412 LRNPMTQKQKGSGDEPPATT 431 (431) T ss_pred eecccccccCCCCCCCCCCC Confidence 01111111111111111111 No 226 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=94.19 E-value=0.0051 Score=33.15 Aligned_cols=371 Identities=9% Similarity=0.028 Sum_probs=146.6 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~ 122 (492) +.+..|+...++--. + ...++ .++..+........ .+.-.| +.-....|+..++-+..-|+++. T Consensus 1 mg~~~~~~~~~~~~~----~--~~~~~----~~~~~~~~~~~~~t----~~~~~~--~~~v~~cv~~Ia~~ia~~p~~v~ 64 (403) T protein:vir:10 1 MGFKSWITEKLNPGQ----R--IIRDM----EPVSHRTNRKPFTT----GQAYSK--IEILNRTANMVIDSAAECSYTVG 64 (403) T ss_pred Ccchhhhhhccchhh----h--hhhcc----cccccccCCccccc----HHHHHH--HHHHHHHHHHHHHHHhhCceeEe Confidence 555555543322100 0 00110 11111111000000 000001 11122345555555555565542 Q ss_pred CC-----c--hhHHHHHH-HHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCC Q lcl|Aclame:pro 123 HT-----D--DEVVKRID-EVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHE 189 (492) Q Consensus 123 ~~-----d--~~~~~~l~-~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~ 189 (492) .. + .....-+. .+.. |. ...+...+...++.+|.||+++. .. .+..++|..+.+..+.. T Consensus 65 ~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~--~~---~l~~l~~~~~~v~~~~~--- 136 (403) T protein:vir:10 65 DKYNIVTYANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWD--GT---SLYHVPAALMQVEADAN--- 136 (403) T ss_pred ecccccccccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEe--Cc---eeEeecCcceEEEEcCC--- Confidence 11 1 11111122 2222 32 24566667888999999997652 21 24455555544332211 Q ss_pred ceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec-CccCCCCcHHHHHHH Q lcl|Aclame:pro 190 ELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-NNDLEISDIFMYKTL 268 (492) Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-nn~~~~s~~~~v~~l 268 (492) .. ++. |........ ......|- ....++++. +...|.|.+...... T Consensus 137 ~~---~~~-------------------~~~~~~~~~----------~~~eiih~-~~~~~~~~~~~~~~G~s~i~~~~~~ 183 (403) T protein:vir:10 137 KF---IKK-------------------FIFNNQINY----------RVDEIIFI-KDNSYVCGTNSQISGQSRVATVIDS 183 (403) T ss_pred ce---EEE-------------------EEecCceee----------cccceEEe-cccccccCCCCCcccccHHHHHHHH Confidence 11 001 100000000 00011111 111111222 334577887777777 Q ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh--------hccceecCCCCcceeeecccC--HHHHH Q lcl|Aclame:pro 269 IDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVP--VENSK 335 (492) Q Consensus 269 iD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~--------~~~~~~~~~~~d~~~l~~~~~--~~~~~ 335 (492) ++....+..-..+.+...+.|-.++... +.+..++++..+. .++++.++++.+.+.+....+ ...+. T Consensus 184 i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~ 263 (403) T protein:vir:10 184 LEKRSKMLNFKEKFLDNGTVIGLILETDEILNKKLRERKQEELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFK 263 (403) T ss_pred HHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHH Confidence 7766666555556666666666665542 2222233333221 123455565555555543333 23345 Q ss_pred HHHHHHHHHHHHHhCCCCCCccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEe Q lcl|Aclame:pro 336 KYLDELYQKIMLFGQAVDFSSDK-FGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISF 414 (492) Q Consensus 336 ~~i~~l~~~i~~~a~~p~~~~~~-~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f 414 (492) +..+..+..|+..=++|..-.+. ..++.+.....+....+.-.+...+..+... ++ ..+.+.+ T Consensus 264 e~~~~~~~~Ia~~fgVPp~~lg~~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~~-----------L~-----~~~~~d~ 327 (403) T protein:vir:10 264 EDIEGFNKSICLAFGVPQVLLDGGNNANIRPNIELFYYMTIIPMLNKLTSSLTFF-----------FG-----YKITPNT 327 (403) T ss_pred HHHHHHHHHHHHHhCCCHHHcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cC-----ceeeecc Confidence 55666677787777777654432 1122222222222222222222222222111 11 1233444 Q ss_pred CCC--CCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC Q lcl|Aclame:pro 415 NYN--KVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK 489 (492) Q Consensus 415 ~~~--~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (492) +.- +-.|..+.++++.++ .|+++...+.+.++.-.=+++..++..--. .... ......+++.++++...+++ T Consensus 328 ~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~~~d~~~~p~--n~~~-~~~~~~~~e~~~~~~~~~g~ 403 (403) T protein:vir:10 328 KEVAALTPDKEAEAKHLTSLVNNGIITGNEARSELNLEPLDDEQMNKIRIPA--NVAG-SATGVSGQEGGRPKGSTEGD 403 (403) T ss_pred chhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCccccccccccc--cccc-ccccCCCCcCCCCCCCcCCC Confidence 322 445777888888776 488999888888754221111111111000 0000 01111222222222222222 No 227 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=93.76 E-value=0.0065 Score=32.58 Aligned_cols=358 Identities=10% Similarity=0.010 Sum_probs=143.9 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQ--RPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIA 120 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G--~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~ 120 (492) +.+ + ++.......-........+ ...+.. ............ -+...=...+|+..++-+.+-|++ T Consensus 1 Mgl---f----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~---al~~~~V~~~i~~Ia~~ia~l~~~ 67 (384) T protein:vir:49 1 MPI---F----NITNLATESPPSNQDSFFDITDPEFLD---ALNGSEWVSAET---ALKNSDLFSIISQLSNDLATAKIT 67 (384) T ss_pred Ccc---c----cccccCcccccccchhhccccchhhcc---cccCCceechhh---hhccHHHHHHHHHHHHHHhhCcee Confidence 111 1 1000000000000000000 000000 000000000000 011122334667776666666766 Q ss_pred ecCCchhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEee Q lcl|Aclame:pro 121 FKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMY 198 (492) Q Consensus 121 ~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~ 198 (492) +.-. ....++..=+. .....+...+..+++.+|.||+.+-++..|++ .+..++|..+-+..++.. ..+.+.+ . T Consensus 68 ~~~~--~~~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~-~~~~y~~--~ 142 (384) T protein:vir:49 68 TSRK--QLQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQ-NGLYYNI--T 142 (384) T ss_pred eecc--hhhhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCC-ceEEEEE--E Confidence 5422 22222221111 13456777788899999999999999998876 677888888877654321 1111111 0 Q ss_pred eeccce-eEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHH Q lcl|Aclame:pro 199 KLENET-KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAY 272 (492) Q Consensus 199 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~ 272 (492) ...... ....+... . |++++. ...|.|.+..+...++.. T Consensus 143 ~~~~~~~~~~~~~~~---------------------------------e--Vih~~~~~~~~~~~G~s~i~~~~~~i~~~ 187 (384) T protein:vir:49 143 FDDPRIPPKQHVPQG---------------------------------D--ILHFRLLSVDGGLTSVSPLMALGRELNIQ 187 (384) T ss_pred ecCccccceeEecCc---------------------------------c--EEEecCCCCCCceeeccHHHHHHHHHHHH Confidence 000000 00000000 1 233321 124777777777777666 Q ss_pred HHHHHHHHHHHHhcCCceEEEecCCcccchhhHHh--------hhhccceecCCCCcceeeecccCHHHHHHHHHHHHHH Q lcl|Aclame:pro 273 NRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRL--------LRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQK 344 (492) Q Consensus 273 ~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~ 344 (492) ..+..-..+.+...+.|-.++.-......++..+. ...++++.++++.+++.+........+.+..+..++. T Consensus 188 ~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~ 267 (384) T protein:vir:49 188 KASDKLTLNALKNALNANGILKIKGGGLLDFKTKQSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQ 267 (384) T ss_pred HHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHH Confidence 65555556666666666665543222111111111 1223455555555544444333444456667778888 Q ss_pred HHHHhCCCCCCccccc-cchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCH Q lcl|Aclame:pro 345 IMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNL-KADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANT 422 (492) Q Consensus 345 i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~-k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~ 422 (492) |+..-++|..-.+..+ +..++..++..+..... .+.-....+...+ ..+ +.....+..-.+. T Consensus 268 Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~pi~~~i~~~l-----------~~~-----l~~~~~~~~~~~~ 331 (384) T protein:vir:49 268 FAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSRFLRPFVSELSKKL-----------SCE-----VDADILPAVDPTG 331 (384) T ss_pred HHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------chh-----hhhhhhhhhhccc Confidence 8888888865443322 22333333332222211 1111111111111 110 0000011111111 Q ss_pred HHHHHHHHHH--hccCChHHHHHhC---CCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 423 ELQVQTAQQS--MGIVSHETVLENH---PFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 423 ~e~~~~~~k~--~g~vs~et~l~~l---~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ......+..+ +|+.++-.+++.+ |+.. .|+.+++ ...+. +.|++.++ T Consensus 332 ~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~---ne~r~~~--------~~~p~------------~gGd~~~~ 383 (384) T protein:vir:49 332 SNYIGLINSMVKTGTLAQNQGLYVLQQAEILP---KDLPEGE--------TDSTL------------KGGETNEQ 383 (384) T ss_pred hHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC---hhHHHHc--------CCCCC------------CCCCCCCC Confidence 1122222222 4567766665544 4432 2222211 11111 12222222 No 228 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=93.15 E-value=0.0086 Score=31.91 Aligned_cols=367 Identities=10% Similarity=0.022 Sum_probs=132.8 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..++.... ....... -+..+..|... ..++... + -+. .-.-.+|+ T Consensus 1 m~~f~~~~~---~~~~~~~-----------------~~~~~~~~~~~----~~~~~~~-------A-l~~--~~V~~~i~ 46 (406) T protein:vir:97 1 MSFFQPLGT---SKVSYDD-----------------YISSVLAGDVS----QKYLGVS-------A-LKN--SDILTATS 46 (406) T ss_pred CccccccCC---CCCCcch-----------------HHHHHhcCCCC----cccccch-------h-hcc--HHHHHHHH Confidence 111111000 0000000 01111222110 0000000 0 011 11112355 Q ss_pred HHHHhhhcCCeeecCCchhH---HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCC-CCce-EEEEEcccc Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDDEV---VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDE-EGEF-KLFRVPAEQ 178 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~~~---~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~-~g~~-~i~~~~p~~ 178 (492) .++.-+..-|+.....+.+. ......+.. | ....+...+...++.+|.||+++.++. .|.+ .+..++|.. T Consensus 47 ~Ia~~iA~lp~~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~ 126 (406) T protein:vir:97 47 IIAGDIARFPLVKKDVNGDIIHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSE 126 (406) T ss_pred HHHHhhhhCeeEEEecCccccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCe Confidence 55444444465543222211 112222322 3 234667778889999999999998875 4554 677788888 Q ss_pred eEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC---- Q lcl|Aclame:pro 179 GIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN---- 254 (492) Q Consensus 179 ~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n---- 254 (492) +.+..++. +.+.+ + +..........+.... |++++. T Consensus 127 v~v~~~~~--~~~~y--~-~~~~~~~~~~~~~~~e-----------------------------------vih~r~~~~d 166 (406) T protein:vir:97 127 TTVEETDN--HEIVY--T-FTDMLTAKQVKCFAHD-----------------------------------VIHWKFFSHD 166 (406) T ss_pred eEEEEcCC--ceEEE--E-EEecCCceEEEEcccc-----------------------------------EEEecCCCCC Confidence 87655532 12211 0 1100000000000011 122221 Q ss_pred ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe-cC--CcccchhhHHhhh-------hccceecCCCCccee Q lcl|Aclame:pro 255 NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK-NY--DDQELPEFKRLLR-------YYGAIKVSDNGGVDT 324 (492) Q Consensus 255 n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~-g~--~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~ 324 (492) ...|.|.++.....++....+..-..+.+.....|-.++. +. +.+..+.++..+. .++++.++++.+... T Consensus 167 g~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~ 246 (406) T protein:vir:97 167 TILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQLSGDARQRARQEFEKMREGSVGGSPLVFDSTMEYTP 246 (406) T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCHHHHHHHHHHHHHHhcccccCceeecCCCceEEE Confidence 1236777766665555444433333344444444433322 22 2222222222221 133445555555444 Q ss_pred eecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-- Q lcl|Aclame:pro 325 IQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-- 402 (492) Q Consensus 325 l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-- 402 (492) ++.......+.+..+..+..|+..=++|..-.+..++. | .+.-.... .+..+|.-.++.+...++ T Consensus 247 l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~-~--~~e~~~~~----------f~~~~l~P~~~~ie~~l~~k 313 (406) T protein:vir:97 247 LEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVNSPN-Q--SVAQLMED----------YVTNDLPFYFDAITSELGLK 313 (406) T ss_pred ccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCCCCc-c--hHHHHHHH----------HHHHHHHHHHHHHHHHHhhh Confidence 44332233333444445566666666666544321111 1 11111111 112222222222221111 Q ss_pred --cCCcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHH--H-----HHHHHHHHHHHHHHhh Q lcl|Aclame:pro 403 --IKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQ--A-----ELERIEQEQTEYNKQL 469 (492) Q Consensus 403 --~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~--~-----E~~ri~~E~~~~~~~~ 469 (492) ...+.....+.|. +..+....++++.++ .|+++...+++.++.- +++. . -+-.++ +..+.+... T Consensus 314 ll~~~~~~~~~i~fd--~~~~~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~~-~~~~~~~~~ 390 (406) T protein:vir:97 314 TLNDKDRRLYHIEFD--TRSVTGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQSSLNYVFLD-KKEEYQDKV 390 (406) T ss_pred hcChhhccceeEEEe--cCccchhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEeeccCccchh-ccccccccc Confidence 1111222334443 112333445555554 4789998888877532 1110 0 000000 000000000 Q ss_pred ccccCCCCCCCCcCCCC Q lcl|Aclame:pro 470 PNLDDGGADSAQQQERS 486 (492) Q Consensus 470 ~~~~~~~~~~~~~~~~~ 486 (492) . ....+.+...+++++ T Consensus 391 ~-~~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 391 G-IKGKGGEVNAEEDKS 406 (406) T ss_pred c-cccCCCCCCCCCCCC Confidence 0 000111111111111 No 229 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=92.65 E-value=0.011 Score=31.43 Aligned_cols=404 Identities=10% Similarity=-0.017 Sum_probs=155.6 Q ss_pred HHHHHHHhhcCC-ChhhHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCCccccccccccccccccccccccccccc Q lcl|Aclame:pro 29 TEIFDAIVRTNN-KPETLEEMIVRYIKQHLEKLPE------ISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITN 101 (492) Q Consensus 29 ~~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~~~~~------~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n 101 (492) |..|+.+..... .+..-.+......+........ --.+..+-.|.... .....+... -...-+.+. T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~g~~v--~~~~a~~~~ 73 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTE-----LAPDTFVGL--ATQAYQANG 73 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhcccccc-----ccCcccccc--chhhhhccH Confidence 444544443221 1111101111100000000000 00111122221100 000000000 000012235 Q ss_pred hHHHHHHHHHHhhhcCCeeecCCch----h-HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCc--- Q lcl|Aclame:pro 102 FHANLVDQKVSYIVGKPIAFKHTDD----E-VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGE--- 168 (492) Q Consensus 102 ~~~~ivd~~~~~l~g~~~~~~~~d~----~-~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~--- 168 (492) ....+|+..+.-+..-|+.+.-.++ . ....+..++. | ....+...+..+++.+|.||+.+.+++.|. T Consensus 74 ~v~~~i~~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~ 153 (466) T protein:vir:81 74 PVFACMLVRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRP 153 (466) T ss_pred HHHHHHHHHHHhhccCceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCcccccc Confidence 5566777777777777776632211 1 1111222222 3 234566777889999999999998877654 Q ss_pred ------eEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceec Q lcl|Aclame:pro 169 ------FKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTG 242 (492) Q Consensus 169 ------~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (492) ..+..++|..+.+..+......+.+ + |....... ..... T Consensus 154 ~~~g~~~~l~~l~~~~v~~~~~~~~~~~~~y--~-~~~~~~~~--------------------------------~~~~~ 198 (466) T protein:vir:81 154 DWVDVVVEERMVRGGRGELGGGQLGWRKVGY--L-YTEGGRQS--------------------------------GNESV 198 (466) T ss_pred ccCcceeEEEEecCcceEEEEcCCCceEEEE--E-EEecCccc--------------------------------cccee Confidence 2355566666655544221111111 0 00000000 00000 Q ss_pred cCCccceEeecC------ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh---- Q lcl|Aclame:pro 243 SWGKIPFIPFKN------NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR---- 309 (492) Q Consensus 243 ~~g~iPvv~~~n------n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~---- 309 (492) .+..=-|++|+. ...|.|.+......++....+..-....+.....|-.++.-. +.+....++..+. T Consensus 199 ~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~ 278 (466) T protein:vir:81 199 GFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRADQAMSKHQAKFFDNGATVNLVIKHNPMADPAAVKKWADEVNSKHA 278 (466) T ss_pred eeccccEEEEcCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHHHHHHHHHHHhc Confidence 001111344432 124677777666666655555545555566666676665532 2232233333221 Q ss_pred ----hccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCcccc--c-----cchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 310 ----YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKF--G-----SAPSGVALEFLYTNLNLK 378 (492) Q Consensus 310 ----~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~--~-----~~~Sg~Al~~~~~~l~~k 378 (492) .++++.++++.+++.++.......+....+.....|+..=++|.+-.+-. . ++.....+.+....+. T Consensus 279 g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~-- 356 (466) T protein:vir:81 279 GVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAH-- 356 (466) T ss_pred CccccccceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHH-- Confidence 13355666666666665444445566677778888888888886544211 1 1222222222222221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeC--CCCCcCHHHHHHHH-------HHH--hccCChHHHHHhCCC Q lcl|Aclame:pro 379 ADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFN--YNKVANTELQVQTA-------QQS--MGIVSHETVLENHPF 447 (492) Q Consensus 379 ~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~--~~~p~d~~e~~~~~-------~k~--~g~vs~et~l~~l~~ 447 (492) -....++..+.+. +-...+...+.+.|+ .-+-.|..+.+++. ..+ .| ++...+....+. T Consensus 357 --P~~~~ie~~l~~~-------L~~~~~~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g-~t~nE~r~~~~~ 426 (466) T protein:vir:81 357 --PLWQNLSGCIGHV-------MPDMGPDVRLWYDADDVPFLREDEKDAADIQKVRAETINTLITAG-YEPESVVAAVNS 426 (466) T ss_pred --HHHHHHHHHHHhh-------cCCcccCcceEEEecchhhhccCHHHHHHHHHHHHHHHHHHHHcC-CChhhccccccC Confidence 2222222222211 111112223345553 44445666555442 222 24 344444443322 Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 448 VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 448 v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) -++. + +...-....+............. +....+.++|. T Consensus 427 gd~~---~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gg~~ng 465 (466) T protein:vir:81 427 GDLR---L--LKHTGLTSVQLLPPGVSASASSD-TPTSGGADDNG 465 (466) T ss_pred Cccc---c--ccCCCcchhhhcccccccccCCC-CcccCCCCcCC Confidence 1110 0 00000001111111111111111 11122233333 No 230 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=92.61 E-value=0.011 Score=31.39 Aligned_cols=338 Identities=11% Similarity=0.030 Sum_probs=134.1 Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeecCC Q lcl|Aclame:pro 46 EEMIVRYIKQHLEKLP-EISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHT 124 (492) Q Consensus 46 ~~~l~~~i~~~~~~~~-~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~ 124 (492) -.++.. ..++.. ...-+.....+.. . ...........+ -++ .=.-..|+..++-+-+-|+. + T Consensus 1 M~~~~~----f~~r~~~~~~~~~~~~~~~~-----~--~~~~~~v~~~~a-l~~--~av~~cv~~ia~~ia~~p~~---~ 63 (359) T protein:vir:10 1 MSILNP----FERRSSITPNNYYPFMVQNG-----S--IVPNSLVDATEA-LKN--SDLYAVTSLISSDIAGTRFI---G 63 (359) T ss_pred Ccccch----hhccccCCCCcchhhhhccc-----c--ccCCcccCHHHh-hcc--hHHHHHHHHHHHhhhcCccc---c Confidence 011111 110000 0000000000000 0 000000000000 011 11123566666666566653 2 Q ss_pred chhHHHHHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeecc Q lcl|Aclame:pro 125 DDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN 202 (492) Q Consensus 125 d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 202 (492) ++....++..=+. ..-..+...+....+.+|.||+.+-++..|.+ .+..++|..+.+..++. .+.+ ++..... T Consensus 64 ~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~---~~~y--~~~~~~~ 138 (359) T protein:vir:10 64 NQVFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDD---TLTY--EVNQFDD 138 (359) T ss_pred chHHHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCC---eEEE--EEEecCC Confidence 2323233221111 12234556677788899999999999988875 46677777776544431 1111 1111111 Q ss_pred ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNT 282 (492) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~ 282 (492) .....+....+.++.. ..++.-|. +...|.|.++.....+.....+..-..+. T Consensus 139 -~~~~~~~~~evih~~~----------------------~~~~~~~~----dg~~G~spi~~~~~~i~~~~~~~~~~~~~ 191 (359) T protein:vir:10 139 -YPSAKYNASEMIHVKI----------------------MAYGVDTL----HNLVGHSPLESLTSEIGQQKEANRLSLST 191 (359) T ss_pred -ceEEEEcccceEEecc----------------------CCCCCCcc----CccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 1111111111111100 00000000 12247777777777776666655555666 Q ss_pred HHhcCCceEEEecC----CcccchhhHHhhh-------hccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 283 FKDSNELTYVLKNY----DDQELPEFKRLLR-------YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQA 351 (492) Q Consensus 283 ~~~~~~~~l~~~g~----~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~ 351 (492) +...+.|-.+++-. +.+..+.++.... .++++.++++-+.+.++.......+.+..+..+..|+..=++ T Consensus 192 f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgV 271 (359) T protein:vir:10 192 LKGALNPTSVVKVPQGTLSSEAKDSIRKEFEKANGGNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGV 271 (359) T ss_pred HhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCC Confidence 66666666555421 2222222333221 123455565555554443222233445566667777777788 Q ss_pred CCCCccccc-cchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHH Q lcl|Aclame:pro 352 VDFSSDKFG-SAPSGVALEFLYTNL-NLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTA 429 (492) Q Consensus 352 p~~~~~~~~-~~~Sg~Al~~~~~~l-~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~ 429 (492) |..-.+..+ ++.+...++..+... ...+.-....+...+.+ -+. +......-.+.......+ T Consensus 272 Pp~~lg~~~~~~~~~~~~e~~~~~~l~~~l~p~~~~l~~~l~~-------~~~---------~~~~~~~~~d~~~~~~~~ 335 (359) T protein:vir:10 272 SDSYLNGTGDQQSSLDQIKDLYVNALNRFIEPLISELRIKCDS-------SIG---------VDMSPITDYSNSVFKADI 335 (359) T ss_pred CHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhc---------ccchhhhhcCHHHHHHHH Confidence 765443322 223333333322211 11111111111111111 111 111111111222333334 Q ss_pred HHH--hccCChHHHHHhC---CCC Q lcl|Aclame:pro 430 QQS--MGIVSHETVLENH---PFV 448 (492) Q Consensus 430 ~k~--~g~vs~et~l~~l---~~v 448 (492) .++ .|+++.-.+.+++ |.+ T Consensus 336 ~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 336 LNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCC Confidence 444 4788888887766 333 No 231 >protein:vir:80211 Length: 514 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522882;genbank:gi:158345175;genbank:GeneID:5687474 Probab=92.36 E-value=0.012 Score=31.17 Aligned_cols=419 Identities=10% Similarity=0.043 Sum_probs=162.4 Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcC--C- Q lcl|Aclame:pro 45 LEEMIVRYIKQHLEKLPEI---SIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGK--P- 118 (492) Q Consensus 45 ~~~~l~~~i~~~~~~~~~~---~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~--~- 118 (492) .++-...+..+. +|.+.. +.+.+|..- ++-... ..... ......+...+-+...++.+++-|++. | T Consensus 1 m~~~~~~l~~k~-~R~~~e~~w~e~a~~~lP-----~~~~~~-~~~~~-~~~~~~~~~dstg~~a~~~LAa~l~~~ltpp 72 (514) T protein:vir:80 1 MRQQASAMWAEY-RDSTAIRKAEDFAKFTIA-----SLMVDP-LDKTH-QAEVVEYDFQSAGAFLVNNLTAKLALTLFPP 72 (514) T ss_pred CccchHHHHHHh-hcchHHHHHHHHHHHhcc-----cccCCC-CCCcc-cccccccccchhHHHHHHHHHHHHHhhhcCC Confidence 112222222211 222233 333444322 110000 00000 001111233455666677776666542 2 Q ss_pred ----eeecCCch-------------hHHHHHH--------HHHhccHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEE Q lcl|Aclame:pro 119 ----IAFKHTDD-------------EVVKRID--------EVLGNRFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFR 173 (492) Q Consensus 119 ----~~~~~~d~-------------~~~~~l~--------~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~ 173 (492) +++..+++ ++.+.++ .+..++|.....++.++...+|.|.+++-.+. + .++. T Consensus 73 ~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~-~--~~~~ 149 (514) T protein:vir:80 73 GRPSFQIELDDTLQELAAANGIDQSELHSRTADLERRATRRLFVNASLSKLHRILKLLVVTGNALFYREPGT-G--KMLV 149 (514) T ss_pred CCcccccccCchhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEEEecCC-C--cEEE Confidence 23332221 1223222 23347889999999999999999876663322 2 3555 Q ss_pred EcccceEEEecCCCCCceEEEEEeeeec--------------------cceeEEEEecceEEEEEEe-cceeeecccccc Q lcl|Aclame:pro 174 VPAEQGIPIWTDKEHEELEAFIRMYKLE--------------------NETKVEYWDKVTVNYYVYE-NGSLIPDYSNNL 232 (492) Q Consensus 174 ~~p~~~~~i~d~~~~~~~~~~i~~~~~~--------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (492) ++-.+ |.+-.| ..+.+...++..... ....+++|+.. ++.-+ .......+. .. T Consensus 150 ~pl~~-y~v~~d-~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v---~~~~~~~~~~~sv~~-e~ 223 (514) T protein:vir:80 150 WTMQS-YTVRRT-SHGDPAVVVLRQQMPFRELTPEIQADAQAKQIAKRDSDKCDLYTVI---EWQPTPNGKRCAVWH-EL 223 (514) T ss_pred EEcCe-EEEeeC-CCcCeEEEEeeeeecHHHhhhhhhhhhhhhhccCCCCCceEEEEEE---EeecCCCCeEEEEEE-ec Confidence 65444 444443 345554444433210 11223333211 01100 010000000 01 Q ss_pred ccccc-cceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHH Q lcl|Aclame:pro 233 ENSKT-HFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKR 306 (492) Q Consensus 233 ~~~~~-~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 306 (492) .+... .....++..+|++.+. .+.+|+|-.+...+-+..++.+.-...........|.+.+.-........... T Consensus 224 ~g~~i~~es~y~~~e~P~i~~Rw~~~~ge~YGrgp~~~al~D~k~L~~l~~~~l~~~~~a~~~~~~v~~~g~~~~~~l~~ 303 (514) T protein:vir:80 224 EGKRVGPESSYPAHLCPYVPVAWNVPDGEHYGRGYVEEYSGDFARLSILSERLGLYEFEALSLLNLVDEAKGGAVDDYRD 303 (514) T ss_pred cceeecccCccccccCCeeeeeeEecCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeCcccccchhhhcc Confidence 11111 1111122347776553 34579999999999999999887777777777777776653211111111111 Q ss_pred hhhhccceecCCCCcceeeec--ccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHH---- Q lcl|Aclame:pro 307 LLRYYGAIKVSDNGGVDTIQV--EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKAD---- 380 (492) Q Consensus 307 ~~~~~~~~~~~~~~d~~~l~~--~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~---- 380 (492) ...+.+..+..++++.+.. ..+....+..++.++..|...-.... .. .-+...++..+......+..... T Consensus 304 --~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aFml~~-~~-rd~~rvTAtEV~~r~~E~~~~LGpv~~ 379 (514) T protein:vir:80 304 --AETGDFVPGQVGSVASYERGDYNKIAQASASVESIVMRLNRAFMYTG-QV-RDAERVTVEEIRTVAEEAENLLGGVYS 379 (514) T ss_pred --cCCceeecCCCccceeeecCcccchHHHHHHHHHHHHHHHHHHhhhc-cC-CCCCCCCHHHHHHHHHHHHHHhhHHHH Confidence 1112333344456666543 34566777778888877743211111 11 12334566666553333333221 Q ss_pred H-HHHHHHHHHHHHHHHHHHH-hcc----CCcceeeeEEeCCCC-CcCHHHHHHH-------HHHHhcc-------CChH Q lcl|Aclame:pro 381 K-LARKAKVAIQELLWFVFEH-FDI----KGEHKDVDISFNYNK-VANTELQVQT-------AQQSMGI-------VSHE 439 (492) Q Consensus 381 ~-~~~~~~~~l~~~~~li~~~-~~~----~~~~~~i~i~f~~~~-p~d~~e~~~~-------~~k~~g~-------vs~e 439 (492) + ....+..-+.+.+.++... .+. ..+. +++.+...+ +-.....++. +..+++. +... T Consensus 380 rl~~Ell~Pli~r~~~il~r~~~g~lP~~p~~l--~~~~~vs~la~l~r~~~~~~l~~~~~~i~~l~~~~p~v~d~id~d 457 (514) T protein:vir:80 380 LLAETLQAPLAYLTMYEASRGNGGMLLGIAQGV--YRPSIITGIPALTRNIETANILRATQEASAIVPALVQLSKRFDPE 457 (514) T ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCchh--hcceeeecHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHH Confidence 1 1222222233333333221 111 1122 334332221 1111112222 2222222 1223 Q ss_pred HHHHh----CC-----CCCCHHHHHHHHHHHHHHHHHhhccccC-CCCCCCCcCCCC Q lcl|Aclame:pro 440 TVLEN----HP-----FVEDLQAELERIEQEQTEYNKQLPNLDD-GGADSAQQQERS 486 (492) Q Consensus 440 t~l~~----l~-----~v~D~~~E~~ri~~E~~~~~~~~~~~~~-~~~~~~~~~~~~ 486 (492) .++.. +| .+.+.+....+.+++++..++++..... ..+..+..--.+ T Consensus 458 ~~~~~~a~~~Gvp~~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (514) T protein:vir:80 458 KLVERIFANNSVDLSTLSKDPDVVAAEAEQEAALAQQQLDVASGALAAETSAGVLTS 514 (514) T ss_pred HHHHHHHHHhCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC Confidence 33332 22 1122222222222221211111111100 000000000001 No 232 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=92.27 E-value=0.012 Score=31.09 Aligned_cols=364 Identities=10% Similarity=0.029 Sum_probs=157.2 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc----------c--ccccccccccc Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE----------P--KPVDATGAVDP 91 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~----------~--~~~~~~~~~~~ 91 (492) ++. |..+.. .+...+|..+...... + ........... T Consensus 1 ~~~-----~~~~~~--------------------------~~~m~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (413) T protein:vir:96 1 MPG-----VSEIRK--------------------------DKNLKFFNNKRSPTEESKAKDEIPKAPQVVMTLPNFFKEL 49 (413) T ss_pred CCc-----cchhhh--------------------------hhcCCccccCCCcchhhhhhccccccccccccchhhHhhh Confidence 111 100000 0001122221100000 0 00000000000 Q ss_pred -ccccccc-ccchHHHHHHHHHHhhhcCCeeecCCc----hhH-HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEE Q lcl|Aclame:pro 92 -LKPDDRM-ITNFHANLVDQKVSYIVGKPIAFKHTD----DEV-VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWL 159 (492) Q Consensus 92 -~~~~~ri-~~n~~~~ivd~~~~~l~g~~~~~~~~d----~~~-~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~ 159 (492) .....++ .......+|+..++-+.+-|+.+--.+ ... ......++. | ....+...+..+.+.+|.||+ T Consensus 50 ~~~~~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~ 129 (413) T protein:vir:96 50 ISDGYTKLSDSPEVRMAVDCIADLVSNMTIQLMQNGETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNA 129 (413) T ss_pred ccchhHHHhhchHHHHHHHHHHHhhccCceEEEEecCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEE Confidence 0000111 135556677777777777777652111 111 112222321 3 234677778889999999999 Q ss_pred EEEeCCCCc-e-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccc Q lcl|Aclame:pro 160 HPYLDEEGE-F-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKT 237 (492) Q Consensus 160 ~v~~d~~g~-~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (492) ++.++..|. + .+..++|..+.+.+++. .+. |...... .+ +.. T Consensus 130 ~i~r~~~g~~~~~L~~l~~~~v~~~~~~~---~~~-----y~~~~~~-~~-~~~-------------------------- 173 (413) T protein:vir:96 130 VVKPQVSGDKIIGLTPISPYKVTFNVSDD---DLD-----YSITFDN-KE-YDP-------------------------- 173 (413) T ss_pred EEEEcCCCCceEEEEEecCceeEEEEcCC---eEE-----EEEeecC-cE-Ech-------------------------- Confidence 999988774 3 57888888887766532 111 1100000 00 000 Q ss_pred cceeccCCccceEeecCc------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC---cccchhhHHhh Q lcl|Aclame:pro 238 HFSTGSWGKIPFIPFKNN------DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD---DQELPEFKRLL 308 (492) Q Consensus 238 ~~~~~~~g~iPvv~~~nn------~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~ 308 (492) . -|++|+.+ ..|.|.+......+.....+..-..+.+...+.|-.++.... .+....+...+ T Consensus 174 -------~--evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~~~~~~~ 244 (413) T protein:vir:96 174 -------S--TLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSDSDELSDEEGRENF 244 (413) T ss_pred -------h--hEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHH Confidence 0 13343311 136777766666665555554455556666666666655322 22222222222 Q ss_pred h--------hccceecCCCC-cceeee-cccCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 R--------YYGAIKVSDNG-GVDTIQ-VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLK 378 (492) Q Consensus 309 ~--------~~~~~~~~~~~-d~~~l~-~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k 378 (492) . .++++.+++++ +.+-+. .......+.+..+..+..|+..=++|..-.+. +.+.+..+..+ T Consensus 245 ~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~-~~~~~~~~~~~-------- 315 (413) T protein:vir:96 245 EEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGV-GTYNKDEFNNF-------- 315 (413) T ss_pred HHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCC-CcchHHHHHHH-------- Confidence 1 12334444443 222111 12223334455556667777776777544321 11222222222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC--CcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHH Q lcl|Aclame:pro 379 ADKLARKAKVAIQELLWFVFEHFDIK--GEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAE 454 (492) Q Consensus 379 ~~~~~~~~~~~l~~~~~li~~~~~~~--~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E 454 (492) ...+|.-+++.+...++.. .+...+++.++..+..|..+.++++.++ .|+++.-.++++++.-.. +. T Consensus 316 -------~~~~l~P~~~~ie~~ln~~ll~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~--~~ 386 (413) T protein:vir:96 316 -------INTKIMSIAQVIQQTYNKLIVEEDMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPD--AE 386 (413) T ss_pred -------HHHHHHHHHHHHHHHHHHhhCCCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--CC Confidence 2222333333332222211 1223455666677778999999998887 478999888888865321 11 Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCC Q lcl|Aclame:pro 455 LERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKE 490 (492) Q Consensus 455 ~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (492) .+.+- ...+... ..+.++++...++++ T Consensus 387 gd~~~--------~~~n~~~-~~~~~~~~~~~~~dt 413 (413) T protein:vir:96 387 MDDLL--------VLENYLQ-QKDLVNQKKLIQDET 413 (413) T ss_pred cceee--------ecccccc-hhhcccccCCCCCCC Confidence 10000 0001000 011111111222222 No 233 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=91.98 E-value=0.013 Score=30.86 Aligned_cols=358 Identities=12% Similarity=0.062 Sum_probs=151.0 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~ 122 (492) +.+..++.....+....... +....-+.... . +.. .. ..+-+.+.-...+|+..++-+..-|+.+. T Consensus 1 MGl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~-~~~-vt---~~~al~~~~v~~~i~~Ia~~iA~lp~~v~ 66 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAEKRGY---LDNVLGKSIRY------S-GVY-VT---DSNILQSSDVYELLQDISNQMVLADIVVE 66 (394) T ss_pred CchhhhhhhhccCCCCchhh---hhhhhhccccc------C-ccc-cC---hhhhhccHHHHHHHHHHHHhhcccceEEE Confidence 33333332221111100001 11111111100 0 000 00 00011223456677777777777777664 Q ss_pred CCch-hH-HHHHHHHH-h-c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEE Q lcl|Aclame:pro 123 HTDD-EV-VKRIDEVL-G-N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFI 195 (492) Q Consensus 123 ~~d~-~~-~~~l~~~~-~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i 195 (492) ..+. .. ...+-.++ . | ....+...+..+++.+|.+|+++-.+.-+ . |..+.|..++.. . T Consensus 67 ~~~g~~~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~-----~--~~~~~~~~~~~~-------~ 132 (394) T protein:vir:62 67 DEFGNEIKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIH-----L--ASNVFTELDDNL-------V 132 (394) T ss_pred cCCCcccchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceee-----c--cccceEEECCce-------E Confidence 3221 11 11111222 2 3 23456667788999999999987433211 1 122333332110 0 Q ss_pred EeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC----ccCCCCcHHHHHHHHHH Q lcl|Aclame:pro 196 RMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----NDLEISDIFMYKTLIDA 271 (492) Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n~~~~s~~~~v~~liD~ 271 (492) .+ |.. .+.. |..--|++++. ...|.|.+......++. T Consensus 133 ~~-------------------~~~-~~~~-------------------~~~~eiih~r~~~~d~~~G~s~~~~~~~~i~~ 173 (394) T protein:vir:62 133 EH-------------------FNI-GGHE-------------------IPPCMIRHVKNIGADHLRGKGILDLGRDTLEG 173 (394) T ss_pred EE-------------------Eee-CCEE-------------------echhheEEecCcCCCCccccChHHHHHHHHHH Confidence 00 100 0000 00001233321 12467777766666665 Q ss_pred HHHHHHHHHHHHHhcCCceEEEe--cCCc-cc--chhhHHhh--------hhccceecCCCCcceeeecccC--HHHHHH Q lcl|Aclame:pro 272 YNRRLSDLSNTFKDSNELTYVLK--NYDD-QE--LPEFKRLL--------RYYGAIKVSDNGGVDTIQVEVP--VENSKK 336 (492) Q Consensus 272 ~~~~~s~~~~~~~~~~~~~l~~~--g~~~-~~--~~~~~~~~--------~~~~~~~~~~~~d~~~l~~~~~--~~~~~~ 336 (492) ...+..-..+.+...+.|-.++. +... +. .++++..+ ..++++.++.+.+.++.....+ ...+.+ T Consensus 174 ~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e 253 (394) T protein:vir:62 174 VMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAILDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLA 253 (394) T ss_pred HHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHHHHHhccccccCceeEeeCCCceeEEecCCCcchHHHHH Confidence 55555455555565566655544 3221 11 12222221 1233445566667776554432 333455 Q ss_pred HHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCcceeee Q lcl|Aclame:pro 337 YLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKGEHKDVD 411 (492) Q Consensus 337 ~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~~~~~i~ 411 (492) ..+.....|+..=++|..-.+... ++.+..... ....+|.=+++.+...+. ...+...+. T Consensus 254 ~~~~~~~~Ia~~fgVPp~~lg~~~~sn~e~~~~~---------------~~~~~l~P~~~~ie~~l~~kll~~~~~~~~~ 318 (394) T protein:vir:62 254 YLNVYKKDLGKFLGINVDTYTELIKEDIEKAMMY---------------IHNKAVRPIMKNFEDHLSLLFYAQNSGKRIK 318 (394) T ss_pred HHHHHHHHHHHHhCCCHHHcCCCCCcCHHHHHHH---------------HHHHHHHHHHHHHHHHHhhhhcCccccCceE Confidence 556667777777777765443211 121111111 112222222222221111 112234577 Q ss_pred EEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCC Q lcl|Aclame:pro 412 ISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSN 487 (492) Q Consensus 412 i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (492) +.|+.....+....++++.++. |+++...+.++++.- +++. .+.+- ...+....+...+.++...+ T Consensus 319 ~~fd~~~~~~~~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~--gd~~~--------~~~n~~~~~~~~~~~~~~kg 388 (394) T protein:vir:62 319 FKINILDFVTYSNKTNIGYNLVRTAITSPDNVADMLGFPKQNTKE--SQAIY--------ISNDVTEIGKKEATDGSLGG 388 (394) T ss_pred EEechhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC--CCeee--------cccccccccccccccccCCC Confidence 8887776666777788877764 789998888877542 2211 11100 00011111111222333445 Q ss_pred CCCCC Q lcl|Aclame:pro 488 NKESE 492 (492) Q Consensus 488 ~~~~e 492 (492) ++++| T Consensus 389 ge~~e 393 (394) T protein:vir:62 389 GEENE 393 (394) T ss_pred CCCCC Confidence 55555 No 234 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=91.50 E-value=0.016 Score=30.50 Aligned_cols=357 Identities=8% Similarity=-0.010 Sum_probs=124.5 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..++.++.....+. .+..+..|.. . ....-+.......+|+ T Consensus 1 Mg~f~~lf~~~~~~~---------------------~~~~~~~~~~-------------v----~~~~~~~~~~v~~~i~ 42 (395) T protein:vir:10 1 MSILEKIFKTRKDIT---------------------YMLDLDMIED-------------L----SQQAYVKRLAIDSCIE 42 (395) T ss_pred CchhhhhhccCcccc---------------------ccccchhccc-------------c----chhhhhhhHHHHHHHH Confidence 222222222111100 0000000100 0 0000112234455666 Q ss_pred HHHHhhhcCCeeecCCchhHHH-HHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccce--E Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDDEVVK-RIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQG--I 180 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~~~~~-~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~--~ 180 (492) .+++-+..-|+.+-..+..... ....+.. |. ...+...+..+.+..|.+|+++..+ +.. ...++..+ . T Consensus 43 ~Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~~~--~~~~~~~~~~~ 118 (395) T protein:vir:10 43 FVARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--KEL--LIADSFYREEY 118 (395) T ss_pred HHHHhhccceeEeccCCccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC--CCe--EecCCccceeE Confidence 6666666667655333222222 2222322 32 2445566677778888877665433 221 11122111 1 Q ss_pred EEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----c Q lcl|Aclame:pro 181 PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----N 255 (492) Q Consensus 181 ~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n 255 (492) .++++. ...+.+ ........+... -|++++. . T Consensus 119 ~~~~~~-----~~~~~~---~~~~~~~~~~~~-----------------------------------evih~~~~~~~~~ 155 (395) T protein:vir:10 119 ALYDDI-----FKDVTV---KDYTYQRTFTMQ-----------------------------------EVIYLKYNNNKVT 155 (395) T ss_pred eecCcc-----eeEEEE---cCceeeeeeccc-----------------------------------cEEEEccCCCCcc Confidence 111110 000000 000000000000 1233321 1 Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe--cC--CcccchhhHHhhhh-------cc--ceecCCCCcc Q lcl|Aclame:pro 256 DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK--NY--DDQELPEFKRLLRY-------YG--AIKVSDNGGV 322 (492) Q Consensus 256 ~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~--g~--~~~~~~~~~~~~~~-------~~--~~~~~~~~d~ 322 (492) ..|.|.++.....++... +.+...+.+-.++. +. +++..+.+...+.. +. ++.++++.+. T Consensus 156 ~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~ 228 (395) T protein:vir:10 156 HFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDY 228 (395) T ss_pred cccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCcee Confidence 235555554444443322 22333333333332 22 11111122221111 11 2223444444 Q ss_pred eeeeccc-----CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 DTIQVEV-----PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFV 397 (492) Q Consensus 323 ~~l~~~~-----~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li 397 (492) +.++... ....+.+..+..++.|+..-++|..-.....++.+.....+....+.-.+...+..+.. .+ T Consensus 229 ~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~-------kL 301 (395) T protein:vir:10 229 EELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNA-------KL 301 (395) T ss_pred eeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-------hh Confidence 4333211 11234555566667777777777654432222222222222211121111111111111 11 Q ss_pred HHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 398 FEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLD 473 (492) Q Consensus 398 ~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~ 473 (492) +........+++.+..-+-.|..+.++++.++. |+++.-.++++++.- ++.. .++.---. .....+... T Consensus 302 ---~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~--~d~~~~~~--n~~~~~~~~ 374 (395) T protein:vir:10 302 ---ITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPE--LDEYLITK--NYEKANSGE 374 (395) T ss_pred ---cChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC--Cceeeecc--ccccccccc Confidence 111111122345566667778889999988774 789988888877542 2210 00000000 000000000 Q ss_pred CCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 474 DGGADSAQQQERSNNKESE 492 (492) Q Consensus 474 ~~~~~~~~~~~~~~~~~~e 492 (492) .......+....++++++ T Consensus 375 -~~~~~~~~~~~kgg~~~~ 392 (395) T protein:vir:10 375 -NDEKEKDENTLKGGDEDE 392 (395) T ss_pred -cccCcccccccCCCCCCC Confidence 011111111222222222 No 235 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=91.50 E-value=0.016 Score=30.50 Aligned_cols=357 Identities=8% Similarity=-0.010 Sum_probs=124.5 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..++.++.....+. .+..+..|.. . ....-+.......+|+ T Consensus 1 Mg~f~~lf~~~~~~~---------------------~~~~~~~~~~-------------v----~~~~~~~~~~v~~~i~ 42 (395) T protein:vir:95 1 MSILEKIFKTRKDIT---------------------YMLDLDMIED-------------L----SQQAYVKRLAIDSCIE 42 (395) T ss_pred CchhhhhhccCcccc---------------------ccccchhccc-------------c----chhhhhhhHHHHHHHH Confidence 222222222111100 0000000100 0 0000112234455666 Q ss_pred HHHHhhhcCCeeecCCchhHHH-HHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccce--E Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDDEVVK-RIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQG--I 180 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~~~~~-~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~--~ 180 (492) .+++-+..-|+.+-..+..... ....+.. |. ...+...+..+.+..|.+|+++..+ +.. ...++..+ . T Consensus 43 ~Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~~~--~~~~~~~~~~~ 118 (395) T protein:vir:95 43 FVARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--KEL--LIADSFYREEY 118 (395) T ss_pred HHHHhhccceeEeccCCccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC--CCe--EecCCccceeE Confidence 6666666667655333222222 2222322 32 2445566677778888877665433 221 11122111 1 Q ss_pred EEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----c Q lcl|Aclame:pro 181 PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----N 255 (492) Q Consensus 181 ~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n 255 (492) .++++. ...+.+ ........+... -|++++. . T Consensus 119 ~~~~~~-----~~~~~~---~~~~~~~~~~~~-----------------------------------evih~~~~~~~~~ 155 (395) T protein:vir:95 119 ALYDDI-----FKDVTV---KDYTYQRTFTMQ-----------------------------------EVIYLKYNNNKVT 155 (395) T ss_pred eecCcc-----eeEEEE---cCceeeeeeccc-----------------------------------cEEEEccCCCCcc Confidence 111110 000000 000000000000 1233321 1 Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe--cC--CcccchhhHHhhhh-------cc--ceecCCCCcc Q lcl|Aclame:pro 256 DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK--NY--DDQELPEFKRLLRY-------YG--AIKVSDNGGV 322 (492) Q Consensus 256 ~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~--g~--~~~~~~~~~~~~~~-------~~--~~~~~~~~d~ 322 (492) ..|.|.++.....++... +.+...+.+-.++. +. +++..+.+...+.. +. ++.++++.+. T Consensus 156 ~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~ 228 (395) T protein:vir:95 156 HFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDY 228 (395) T ss_pred cccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCcee Confidence 235555554444443322 22333333333332 22 11111122221111 11 2223444444 Q ss_pred eeeeccc-----CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 DTIQVEV-----PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFV 397 (492) Q Consensus 323 ~~l~~~~-----~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li 397 (492) +.++... ....+.+..+..++.|+..-++|..-.....++.+.....+....+.-.+...+..+.. .+ T Consensus 229 ~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~-------kL 301 (395) T protein:vir:95 229 EELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNA-------KL 301 (395) T ss_pred eeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-------hh Confidence 4333211 11234555566667777777777654432222222222222211121111111111111 11 Q ss_pred HHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 398 FEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLD 473 (492) Q Consensus 398 ~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~ 473 (492) +........+++.+..-+-.|..+.++++.++. |+++.-.++++++.- ++.. .++.---. .....+... T Consensus 302 ---~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~--~d~~~~~~--n~~~~~~~~ 374 (395) T protein:vir:95 302 ---ITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPE--LDEYLITK--NYEKANSGE 374 (395) T ss_pred ---cChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC--Cceeeecc--ccccccccc Confidence 111111122345566667778889999988774 789988888877542 2210 00000000 000000000 Q ss_pred CCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 474 DGGADSAQQQERSNNKESE 492 (492) Q Consensus 474 ~~~~~~~~~~~~~~~~~~e 492 (492) .......+....++++++ T Consensus 375 -~~~~~~~~~~~kgg~~~~ 392 (395) T protein:vir:95 375 -NDEKEKDENTLKGGDEDE 392 (395) T ss_pred -cccCcccccccCCCCCCC Confidence 011111111222222222 No 236 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=91.50 E-value=0.016 Score=30.50 Aligned_cols=357 Identities=8% Similarity=-0.010 Sum_probs=124.5 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..++.++.....+. .+..+..|.. . ....-+.......+|+ T Consensus 1 Mg~f~~lf~~~~~~~---------------------~~~~~~~~~~-------------v----~~~~~~~~~~v~~~i~ 42 (395) T protein:vir:10 1 MSILEKIFKTRKDIT---------------------YMLDLDMIED-------------L----SQQAYVKRLAIDSCIE 42 (395) T ss_pred CchhhhhhccCcccc---------------------ccccchhccc-------------c----chhhhhhhHHHHHHHH Confidence 222222222111100 0000000100 0 0000112234455666 Q ss_pred HHHHhhhcCCeeecCCchhHHH-HHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccce--E Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDDEVVK-RIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQG--I 180 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~~~~~-~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~--~ 180 (492) .+++-+..-|+.+-..+..... ....+.. |. ...+...+..+.+..|.+|+++..+ +.. ...++..+ . T Consensus 43 ~Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~~~--~~~~~~~~~~~ 118 (395) T protein:vir:10 43 FVARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--KEL--LIADSFYREEY 118 (395) T ss_pred HHHHhhccceeEeccCCccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC--CCe--EecCCccceeE Confidence 6666666667655333222222 2222322 32 2445566677778888877665433 221 11122111 1 Q ss_pred EEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----c Q lcl|Aclame:pro 181 PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----N 255 (492) Q Consensus 181 ~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n 255 (492) .++++. ...+.+ ........+... -|++++. . T Consensus 119 ~~~~~~-----~~~~~~---~~~~~~~~~~~~-----------------------------------evih~~~~~~~~~ 155 (395) T protein:vir:10 119 ALYDDI-----FKDVTV---KDYTYQRTFTMQ-----------------------------------EVIYLKYNNNKVT 155 (395) T ss_pred eecCcc-----eeEEEE---cCceeeeeeccc-----------------------------------cEEEEccCCCCcc Confidence 111110 000000 000000000000 1233321 1 Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEe--cC--CcccchhhHHhhhh-------cc--ceecCCCCcc Q lcl|Aclame:pro 256 DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLK--NY--DDQELPEFKRLLRY-------YG--AIKVSDNGGV 322 (492) Q Consensus 256 ~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~--g~--~~~~~~~~~~~~~~-------~~--~~~~~~~~d~ 322 (492) ..|.|.++.....++... +.+...+.+-.++. +. +++..+.+...+.. +. ++.++++.+. T Consensus 156 ~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~ 228 (395) T protein:vir:10 156 HFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDY 228 (395) T ss_pred cccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCcee Confidence 235555554444443322 22333333333332 22 11111122221111 11 2223444444 Q ss_pred eeeeccc-----CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 DTIQVEV-----PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFV 397 (492) Q Consensus 323 ~~l~~~~-----~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li 397 (492) +.++... ....+.+..+..++.|+..-++|..-.....++.+.....+....+.-.+...+..+.. .+ T Consensus 229 ~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~-------kL 301 (395) T protein:vir:10 229 EELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGETADLEKNTLVFEKFCLTPLLKKIQNELNA-------KL 301 (395) T ss_pred eeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-------hh Confidence 4333211 11234555566667777777777654432222222222222211121111111111111 11 Q ss_pred HHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhcccc Q lcl|Aclame:pro 398 FEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLD 473 (492) Q Consensus 398 ~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~ 473 (492) +........+++.+..-+-.|..+.++++.++. |+++.-.++++++.- ++.. .++.---. .....+... T Consensus 302 ---~~~~~~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~--~d~~~~~~--n~~~~~~~~ 374 (395) T protein:vir:10 302 ---ITQSMYLKDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPE--LDEYLITK--NYEKANSGE 374 (395) T ss_pred ---cChhhhcccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC--Cceeeecc--ccccccccc Confidence 111111122345566667778889999988774 789988888877542 2210 00000000 000000000 Q ss_pred CCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 474 DGGADSAQQQERSNNKESE 492 (492) Q Consensus 474 ~~~~~~~~~~~~~~~~~~e 492 (492) .......+....++++++ T Consensus 375 -~~~~~~~~~~~kgg~~~~ 392 (395) T protein:vir:10 375 -NDEKEKDENTLKGGDEDE 392 (395) T ss_pred -cccCcccccccCCCCCCC Confidence 011111111222222222 No 237 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=88.77 E-value=0.03 Score=28.91 Aligned_cols=372 Identities=9% Similarity=-0.016 Sum_probs=143.4 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccc--ccchHHHHHHHHHHhhhcCCee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRM--ITNFHANLVDQKVSYIVGKPIA 120 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri--~~n~~~~ivd~~~~~l~g~~~~ 120 (492) +.+-.+|... .. .+-.+..-.+.-........... ......+ .++....+|+.+++-+.+-|+. T Consensus 1 Mg~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~ 66 (423) T protein:vir:81 1 MGFLQKLGLA-------PS------VVATPEPIELVGPIFESLKLSTK-NMTVEQIWEDQPHLRTVTTFIARNVASLQLQ 66 (423) T ss_pred CchhHhhccc-------cc------cccCccccccccccccccccccc-hhhHHHHHHhhhHHHHHHHHHHHhHhhCceE Confidence 2221221100 00 00000000000000000000000 0000001 1344556788888777777776 Q ss_pred e---cCCc--hhH-HHHHHHHH-h-c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEe---cCC Q lcl|Aclame:pro 121 F---KHTD--DEV-VKRIDEVL-G-N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIW---TDK 186 (492) Q Consensus 121 ~---~~~d--~~~-~~~l~~~~-~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~---d~~ 186 (492) + +.+. +.. ...+..++ . | ....+...+..+.+.+|.+|+++.++..+...+..+.|..+-.+. ... T Consensus 67 ~~~~~~dg~~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~ 146 (423) T protein:vir:81 67 AFERVEDGGRERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKD 146 (423) T ss_pred EEEEecCCceeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccC Confidence 4 1111 111 11111222 2 3 234566667888999999999998775433333333332222111 100 Q ss_pred CCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC----c-cCCCCc Q lcl|Aclame:pro 187 EHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----N-DLEISD 261 (492) Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n-~~~~s~ 261 (492) ..+.+.+-+.......+..++ + +.. -|+++++ . ..|.|. T Consensus 147 ~~~~~~Y~~~~~~~~~g~~~~-~---------------------------------~~~--evih~r~~~~~~~~~G~sp 190 (423) T protein:vir:81 147 GWGSLDYIIIESGDNDGRSVK-V---------------------------------PGE--RVIHRHGYNPKTMKRGKSP 190 (423) T ss_pred CCcceEEEEEEecCCCceEEE-E---------------------------------ccc--ceEEecCCCCCCccccccH Confidence 111111100000000000000 0 000 1233321 1 247777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC--------CcccchhhHHhhh---------hccceecCCCCccee Q lcl|Aclame:pro 262 IFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY--------DDQELPEFKRLLR---------YYGAIKVSDNGGVDT 324 (492) Q Consensus 262 ~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~--------~~~~~~~~~~~~~---------~~~~~~~~~~~d~~~ 324 (492) +......++....+..-....+...+.|-.+++-. +.+....+...+. .++++.++++.+.+. T Consensus 191 i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~ 270 (423) T protein:vir:81 191 VQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAEN 270 (423) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEe Confidence 77666666655555444445555566666665421 1122222222221 134555665555555 Q ss_pred eecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-- Q lcl|Aclame:pro 325 IQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF-- 401 (492) Q Consensus 325 l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~-- 401 (492) ++.......+.+..+..+..|+..=++|..-.+..+ ++-|. ++.....+ ...+|.-.+..+...+ T Consensus 271 l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn--~e~~~~~f----------~~~~L~P~~~~ie~~l~~ 338 (423) T protein:vir:81 271 FHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSN--VREFRKAL----------YGDNLGSWIRIIQDVMNL 338 (423) T ss_pred ccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCccc--HHHHHHHH----------HHHHHHHHHHHHHHHHhh Confidence 543333334444555666778777778765443221 11111 11111111 1111222222221111 Q ss_pred ------ccCCcceeeeEEeCCCCCcCHHHHHHHHHHH---hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 402 ------DIKGEHKDVDISFNYNKVANTELQVQTAQQS---MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNL 472 (492) Q Consensus 402 ------~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~---~g~vs~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~ 472 (492) +.......+++.+..-+..|..+.++++.++ .|+++.-.+.+.++.-.. +..+.. ..+. T Consensus 339 ~L~~~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R~~~gl~p~--~gGD~~----------~~p~ 406 (423) T protein:vir:81 339 FLLPRVGIDNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVRAMDNLPSI--DGGDDL----------ARPL 406 (423) T ss_pred hhcCccccccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCC--CCccee----------eccc Confidence 1111122344444555667888888887764 378888878877654211 000000 0111 Q ss_pred cCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 473 DDGGADSAQQQERSNNKESE 492 (492) Q Consensus 473 ~~~~~~~~~~~~~~~~~~~e 492 (492) +.. ...+ ....+++.| T Consensus 407 n~~---~~~~-~~~~~~~~~ 422 (423) T protein:vir:81 407 NTE---FGDS-EDAPGEEVE 422 (423) T ss_pred ccc---cCcc-CCCCCCCCC Confidence 100 0111 111122222 No 238 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=88.59 E-value=0.031 Score=28.82 Aligned_cols=425 Identities=16% Similarity=0.149 Sum_probs=172.2 Q ss_pred ChhhhHHHHHHHHHhcCCceec----------cCCCcHHHHHHHHhhcCCCh----hhH-HHHHHHH---HHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILY----------PSQPTQTEIFDAIVRTNNKP----ETL-EEMIVRY---IKQHLEKLPE 62 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~----~~~-~~~l~~~---i~~~~~~~~~ 62 (492) |.|. ++++-+-|.+.....| ..+|...+=...+......+ ... .++.... ++...+-+.+ T Consensus 1 m~f~--~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~ 78 (523) T protein:vir:68 1 MKFN--ILSLFAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDT 78 (523) T ss_pred CCCc--hhhhhhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHH Confidence 8883 4455555555322211 12221111000000000000 000 0111000 0111222334 Q ss_pred HHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHH-HHhhhcCCeeecCCchhHHHH--------HH Q lcl|Aclame:pro 63 ISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQK-VSYIVGKPIAFKHTDDEVVKR--------ID 133 (492) Q Consensus 63 ~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~-~~~l~g~~~~~~~~d~~~~~~--------l~ 133 (492) |+.+..+++-+.. ...||+.. +.--...|+.+..++.+..+. .+ T Consensus 79 YR~ma~~pEvd~A---------------------------v~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~ 131 (523) T protein:vir:68 79 YRNLMTNYEVDNA---------------------------VSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFN 131 (523) T ss_pred HHHHhhccchhhH---------------------------HHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHH Confidence 4444433333221 11222221 111234566665444322222 22 Q ss_pred HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC----CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEE Q lcl|Aclame:pro 134 EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE----EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEY 208 (492) Q Consensus 134 ~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~----~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~ 208 (492) .+.. =+|+....+..|.+.+.|+.|++...|. +|-..+..++|+.+-.|.. ...+....+.+ T Consensus 132 ~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~-------------i~~~~~~g~~v 198 (523) T protein:vir:68 132 EVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVRE-------------VITTTEAGVKI 198 (523) T ss_pred HHHHHhccchhhhHHHHhheeeeEEEEEEEeeCCCccccceeeeeeCCcceeEEEe-------------ecCCCCcchhh Confidence 2221 2778888999999999999999998874 3667889999998755432 11111111111 Q ss_pred EecceEEEEEEecceeeeccccccccccccceeccCCccce--EeecCcc----CCCCcHHHHHHHHHHHHHH--HHHHH Q lcl|Aclame:pro 209 WDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFKNND----LEISDIFMYKTLIDAYNRR--LSDLS 280 (492) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~nn~----~~~s~~~~v~~liD~~~~~--~s~~~ 280 (492) .. ....+|.+..........+... .++.-=+||- |.|.+.- .+.-.+.-+...+..+|++ +-|.+ T Consensus 199 i~-~~~e~f~Y~~~~~~~~~~g~~~------~~~~~ikI~~dAI~y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAl 271 (523) T protein:vir:68 199 VK-GYKEYFIYDTSHESYACDGRIY------EAGTKIKIPKAAIVYAHSGLVDCCGKNIIGYLHRAIKPANQLKLLEDAV 271 (523) T ss_pred hh-hhhhheeecccccccccccccc------CCCcceecchhheeeeeccceeCCCCceeccchhhhHHHHhhHHHHhhH Confidence 11 1112222222211110110000 0000001111 2222211 1111122233334444432 33444 Q ss_pred HHHHhcCCceEEEecCCcccchhhH-----Hh----hhhcccee--------------------c--CCCCc-ceeeecc Q lcl|Aclame:pro 281 NTFKDSNELTYVLKNYDDQELPEFK-----RL----LRYYGAIK--------------------V--SDNGG-VDTIQVE 328 (492) Q Consensus 281 ~~~~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~~~--------------------~--~~~~d-~~~l~~~ 328 (492) -.-+....|-.=+.-.+..+.++.+ +. .++..+.. + -+||. .+.-|.+ T Consensus 272 VIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLp 351 (523) T protein:vir:68 272 VIYRITRAPDRRVWYVDTGNMPSRKAAEHMQHVMNTMKNRIAYDATTGKIKNQQHIMSMTEDYWLQRRDGKAVTEVDTLP 351 (523) T ss_pred HHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhhcceeEEeccCCeeccchhhhhhHhhhcccccCCCcccceeecc Confidence 4444444443322211222222111 11 11100000 0 11222 2222333 Q ss_pred cC-HHHHHHHHHHHHHHHHHHhCCCC--CCccc--cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 329 VP-VENSKKYLDELYQKIMLFGQAVD--FSSDK--FG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD 402 (492) Q Consensus 329 ~~-~~~~~~~i~~l~~~i~~~a~~p~--~~~~~--~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 402 (492) .. --+...-+.-+++.++..-++|- +..+. +. |. |..|-.-+.....-+.+.+..|..-+.++++.=+-+-| T Consensus 352 Ggqnlgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr--~~EItRDEikF~KFI~rLR~rFs~lf~~~Lk~qLilKg 429 (523) T protein:vir:68 352 GADNTGNMEDVRWFRNALYMALRIPITRIPSDQGGIQFDA--GTSITRDELSFGKFIRELQHKFEEIFLDPLKTNLILKG 429 (523) T ss_pred ccCCcChHHHHHHHHHHHHHHhCCcceeecCCCcceeccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc Confidence 21 22344456777788888777774 22221 11 12 22444444445566677777888888887766544444 Q ss_pred cC--Ccc----eeeeEEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHH Q lcl|Aclame:pro 403 IK--GEH----KDVDISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIEQEQT 463 (492) Q Consensus 403 ~~--~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~ 463 (492) +- .+| ..|.+.|...-.-.+...++ ++..+ +| .+|.+++.+.+ ..++ +..++.++|++|.. T Consensus 430 iit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~kqI~~E~k 509 (523) T protein:vir:68 430 IITEDEWNDEINNIKIKFHRDSYFSELKDAEILERRINMLQMAEPFIGKYISHRTAMKDILQMSDEEIEQEAKQIEEESK 509 (523) T ss_pred CCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhh Confidence 32 233 45778886555444444433 33333 24 47999999864 3332 24556666666653 Q ss_pred HHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 464 EYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +.. ..++. +++.| T Consensus 510 ~~~---------~~~p~-------~e~~~ 522 (523) T protein:vir:68 510 EAR---------FQDPD-------QEQED 522 (523) T ss_pred cCC---------CCCCc-------hhhhc Confidence 211 11111 11111 No 239 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=88.25 E-value=0.033 Score=28.67 Aligned_cols=416 Identities=12% Similarity=0.070 Sum_probs=156.0 Q ss_pred ChhhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHH--HHHHHH----HHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEE--MIVRYI----KQHLEKLPEISIGQEYYEQRP 74 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~i----~~~~~~~~~~~~~~~YY~G~~ 74 (492) ++|.+-... +....+=-+.+|.+++-....= ...+..+....... .-..++ +...+-+.+|+.+.. - | T Consensus 4 ~~~w~~~de-~~~~~~~~~~~~~~~~p~~~dG-~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~---~-~ 77 (533) T protein:vir:58 4 LEKYKKLNE-AVNFTNFLSPMYGMGAPHGAGG-SSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDY---T-D 77 (533) T ss_pred cchhhhhhH-HHHHHHhhchhhcccCccCCCC-CccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhc---c-C Confidence 222221110 0000000111111111000000 00000000000000 000000 000011111211110 0 0 Q ss_pred ccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHHHHHHHHh--ccHHHHHHHHHHHH Q lcl|Aclame:pro 75 DIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVKRIDEVLG--NRFDDKLHSVLTGA 151 (492) Q Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~~l~~~~~--n~~~~~~~~~~~~~ 151 (492) +- +.+=...||+. .+..-...|+.+..++.+..+.+..... .+|+....+..|.+ T Consensus 78 pE----------------------Vd~AideIvneaiv~d~~~~pV~v~l~~~e~s~~iK~kI~~lldf~~~~~~~fR~W 135 (533) T protein:vir:58 78 PL----------------------ISTVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDYVINIEKNAYPIIRNM 135 (533) T ss_pred cc----------------------hhhHHHhhhceeeEecCCCceeEeecccccccHHHHHHHHHHhcchhhhhHHHHhh Confidence 00 00111222222 2233356677777666555554444332 47889999999999 Q ss_pred HhcCeEEEEEEeC-CC-CceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccc Q lcl|Aclame:pro 152 SNKGIEWLHPYLD-EE-GEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYS 229 (492) Q Consensus 152 ~~~G~~~~~v~~d-~~-g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (492) .+.|+.|.+.-.+ ++ |-..+..+||+.+-.+|+.... ..+|++...... ..+ T Consensus 136 YVDGriy~Hkiik~~k~GI~elr~lDPr~i~~vr~~~t~-------------------------~eyyvy~~~~~~-~~s 189 (533) T protein:vir:58 136 IKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETD-------------------------TWYYVITDVYRN-VVS 189 (533) T ss_pred hhcceeEEEeccCCcccchhhheecCCeeeEEEEeeccc-------------------------eEEEeecccccc-ccc Confidence 9999999998542 33 4347899999999887753211 011221111100 000 Q ss_pred cccccccccceeccCCccc---eEeec------CccCCCCcHHHHHHHHHHHHHH--HHHHHHHHHhcCCce---EEE-- Q lcl|Aclame:pro 230 NNLENSKTHFSTGSWGKIP---FIPFK------NNDLEISDIFMYKTLIDAYNRR--LSDLSNTFKDSNELT---YVL-- 293 (492) Q Consensus 230 ~~~~~~~~~~~~~~~g~iP---vv~~~------nn~~~~s~~~~v~~liD~~~~~--~s~~~~~~~~~~~~~---l~~-- 293 (492) .... -.+| |+++. +...+.|-+... +..+|.+ +-|.+-.-+....|- +.+ T Consensus 190 ~~~~-----------~kI~~daI~y~~SGl~d~~~~~iisyLhkA---iKp~NQLkmiEDAlVIYRisRAPeRRvFYIDV 255 (533) T protein:vir:58 190 GYFN-----------EDIPEEDVIHFSHKIDTNFFPYGRSYLESA---RAIWNQLRLMEDALMLYRVVRSVDRRVFYVDV 255 (533) T ss_pred Cccc-----------cccchhheeeeeeccccCCCCceehhhhHH---HHHHHHHHHHHHHHHHHhhcCChhheEEEEee Confidence 0000 0111 12211 123344555443 2333332 233333333333332 221 Q ss_pred ecCCcccchhhHHhh----h----------------hcc-ceec--------CCCC-cceeeecccCHHHHHHHHHHHHH Q lcl|Aclame:pro 294 KNYDDQELPEFKRLL----R----------------YYG-AIKV--------SDNG-GVDTIQVEVPVENSKKYLDELYQ 343 (492) Q Consensus 294 ~g~~~~~~~~~~~~~----~----------------~~~-~~~~--------~~~~-d~~~l~~~~~~~~~~~~i~~l~~ 343 (492) -+......+.-.+.+ + ... .+.+ -+|| +.+.-|.+...-+...-+.-+++ T Consensus 256 GNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTEI~TLpGg~lgemeDV~YF~k 335 (533) T protein:vir:58 256 GNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVEIDILQGSKVDLAEDVEYMLN 335 (533) T ss_pred cCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCccceeeecCCCCCCcHHHHHHHHH Confidence 111111111111111 0 000 0000 1122 12233333322344567788888 Q ss_pred HHHHHhCCCCCCc---cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCc Q lcl|Aclame:pro 344 KIMLFGQAVDFSS---DKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVA 420 (492) Q Consensus 344 ~i~~~a~~p~~~~---~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~ 420 (492) .++.--.+|-.-. +.| |..| .|-.-+.....-+.+.+..|..-|++-+ ++. ++ -...+.++.|...-.- T Consensus 336 kLy~ALnVP~sRl~~e~~f-gr~~--eItRDEiKF~KFI~rLR~rF~~ll~~qL--ilk--~i-it~eew~~~f~~Dn~f 407 (533) T protein:vir:58 336 RLISALKVPKAFIGYEGDV-NAKN--TLATQDIKFNNTIKRIQGFFVEELERMV--RMN--KE-FADQDFRLVMNRSNSI 407 (533) T ss_pred HHHHHhCCCeeecCCCCCC-ccch--hhhHHHHHHHHHHHHHHHHHHHHHhccc--ccc--cC-cchhheeeeeeccchH Confidence 9998888885322 223 2222 2322222233344455555666655432 211 11 1112345777555443 Q ss_pred CHHHH-------HHHHHHHhccCChHHHHHh-CCCCCCHHHHHHHHHHHHHHHH-------HhhccccCCCCCC--C--- Q lcl|Aclame:pro 421 NTELQ-------VQTAQQSMGIVSHETVLEN-HPFVEDLQAELERIEQEQTEYN-------KQLPNLDDGGADS--A--- 480 (492) Q Consensus 421 d~~e~-------~~~~~k~~g~vs~et~l~~-l~~v~D~~~E~~ri~~E~~~~~-------~~~~~~~~~~~~~--~--- 480 (492) .+... ++++..+.+.|++.++.+. |-..+|...+.+.|++|..+.. ..+.+....+.-. . T Consensus 408 ~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~tdei~~q~e~ie~E~~~~~~~~~~~~~e~~~~~~~~~~~~p~~~~ 487 (533) T protein:vir:58 408 VEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEETTPADFLGERGSPIESP 487 (533) T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCChhhhHHHHHHHHhhcCCCCCCCCcccccCCcccCccccCcccCC Confidence 33333 3444555678999988875 4455566666667777744311 1111110000000 0 Q ss_pred -----------------------------CcCCCCCCCCCC Q lcl|Aclame:pro 481 -----------------------------QQQERSNNKESE 492 (492) Q Consensus 481 -----------------------------~~~~~~~~~~~e 492 (492) .+.+.+++++.+ T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~~~~~ 528 (533) T protein:vir:58 488 RGRTEFDFGTEGGEELGGELNLGGAFEEFEEETGGGEEELP 528 (533) T ss_pred CChhhHhcccCCcccccccccccccchhhhhhcCCcccCCC Confidence 000011111111 No 240 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=88.24 E-value=0.034 Score=28.67 Aligned_cols=446 Identities=14% Similarity=0.104 Sum_probs=172.4 Q ss_pred ChhhhH-HHHHHHHHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCccc Q lcl|Aclame:pro 1 MQFIQL-ISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMI--VRYIKQHLEKLPEISIGQEYYEQRPDIV 77 (492) Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~i~~~~~~~~~~~~~~~YY~G~~~i~ 77 (492) .++.-. |.|- +... .+..=...|+.-+-.+.+...+.. ...+ ..-+....+-+.+|+.+..+++-+..+ T Consensus 2 ~~lfgf~~~~~-~~~~--~~~~s~~~p~~ddg~~~~~~~g~~----~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~Av- 73 (558) T protein:vir:10 2 AKLFGFSIEET-QKKS--TSIISPVPKNNEDGVDNFISSGFY----GQYVDIEGAYRSEYDLIRRYREMALHPEADGAI- 73 (558) T ss_pred cchhcchhhhh-hhhc--cCCccccCCCccccccceecccee----eeeecccchhhhHHHHHHHHHHHhhccchhhHH- Confidence 111111 1111 1111 111111111111111111000000 0000 000111122334444444444333211 Q ss_pred cccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchh----HHHHHH----HHHh-ccHHHHHHHH Q lcl|Aclame:pro 78 KEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDE----VVKRID----EVLG-NRFDDKLHSV 147 (492) Q Consensus 78 ~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~----~~~~l~----~~~~-n~~~~~~~~~ 147 (492) ..||+. .+.-....|+.+..++.+ ..+.+. .+.. =+|+....+. T Consensus 74 --------------------------~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~ 127 (558) T protein:vir:10 74 --------------------------EDVVNEAIVSDLYDSPVEVELSNLNASNTLKKKIREEFRYIKEMMDFDKKSHEI 127 (558) T ss_pred --------------------------HHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHH Confidence 112221 112223455555443322 222222 2221 2778889999 Q ss_pred HHHHHhcCeEEEEEEeCC----CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecce Q lcl|Aclame:pro 148 LTGASNKGIEWLHPYLDE----EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGS 223 (492) Q Consensus 148 ~~~~~~~G~~~~~v~~d~----~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (492) .|.+.+.|+.|++...|. +|-..+..++|+.+-.|..-.. +..-.-......+...+ ++.+....+|.+.... T Consensus 128 fR~WYVDgRiyfHKiid~k~pk~GI~ELr~lDPr~i~~Vr~i~~--~~~~~~~~~~~~~~~~~-~~~~~~~eyy~Y~~~~ 204 (558) T protein:vir:10 128 FRNWYVDGRVFYLKVIDTKNPQEGIQDLRYIDPLKIKFIRQEKR--KPGNQDPAIRVRSEQDV-VPNPEFEEFYIYTPKV 204 (558) T ss_pred HhhheeeeEEEEEEEEeCCCccccceeeeeeCcccceeeeeecc--ccccccceeeeecccce-eeccceeEeeeecCCc Confidence 999999999999998864 3767899999999877654211 11100011111111111 2223333444443322 Q ss_pred eeeccccccccccccceeccCCccce--EeecCc-------cCCCCcHHHHHHHHHHHHHH--HHHHHHHHHhcCCceEE Q lcl|Aclame:pro 224 LIPDYSNNLENSKTHFSTGSWGKIPF--IPFKNN-------DLEISDIFMYKTLIDAYNRR--LSDLSNTFKDSNELTYV 292 (492) Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~nn-------~~~~s~~~~v~~liD~~~~~--~s~~~~~~~~~~~~~l~ 292 (492) ....... +.. ...+++ +||- |.|... ..-.|-++ ..+..+|++ +-|.+-.-+..+.|-+= T Consensus 205 ~~~~~~~--~~~---~~~~~v-kI~~dAI~y~hSGL~d~~~~~i~syLh---kAIKp~NQLkmlEDAlVIYRitRAPERR 275 (558) T protein:vir:10 205 QHPTGMV--GQM---GGKNSI-KIAKDSITMCTSGLVDRNKNRVLSYLH---KAIKALNQLRMIEDSLVIYRLSRAPERR 275 (558) T ss_pred ccccccc--eee---cCCCce-eechhheeeecccceecCCCeeeecch---HhhHhHHhhHHHHhhHHHHhhhccccce Confidence 1111100 000 000111 1121 222211 11123333 333344432 33444444444444332 Q ss_pred EecCCcccchhhH-----H----hhhhccce--------------e------c--CCCCc-ceeeecccC-HHHHHHHHH Q lcl|Aclame:pro 293 LKNYDDQELPEFK-----R----LLRYYGAI--------------K------V--SDNGG-VDTIQVEVP-VENSKKYLD 339 (492) Q Consensus 293 ~~g~~~~~~~~~~-----~----~~~~~~~~--------------~------~--~~~~d-~~~l~~~~~-~~~~~~~i~ 339 (492) +.-.+..+.++.+ + ..++..+. . + -+||. .+.-|.+.. .-+...-+. T Consensus 276 vFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnLgem~DV~ 355 (558) T protein:vir:10 276 IFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTGEVRDDRKFMSMMEDFWLPRREGGRGTEITTLPGGQNLGELSDVD 355 (558) T ss_pred EEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhHhhhcccccCCCCccceeeccccCCcchHHHHH Confidence 2211211222111 1 11110000 0 0 11222 222222221 122334567 Q ss_pred HHHHHHHHHhCCCCC--CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--Ccc----eeee Q lcl|Aclame:pro 340 ELYQKIMLFGQAVDF--SSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK--GEH----KDVD 411 (492) Q Consensus 340 ~l~~~i~~~a~~p~~--~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~--~~~----~~i~ 411 (492) -+++.++..-++|-- ..++.-+..-|..|-.-+.....-+.+.+..|..-+.++++.=+-+-|+- .+| ..|. T Consensus 356 YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~ 435 (558) T protein:vir:10 356 YFQKKLYRALGVPESRIAAEGGFNLGRSSEILRDELKFAKFVGRLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQ 435 (558) T ss_pred HHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcce Confidence 777888887777742 22211111122234444444556667777788888888776654444432 233 4577 Q ss_pred EEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHHHHHHh----hccc-- Q lcl|Aclame:pro 412 ISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIEQEQTEYNKQ----LPNL-- 472 (492) Q Consensus 412 i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~~~~~~----~~~~-- 472 (492) +.|...-.-.+...++ ++..+ +| .+|.+++.+.+ -.++ +..++.++|++|..+..-. .... T Consensus 436 ~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~ 515 (558) T protein:vir:10 436 YDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYSTEYVRKRVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITG 515 (558) T ss_pred EEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhhc Confidence 8886555444444333 33333 24 47999999864 4433 3567777888776531100 0000 Q ss_pred -------cCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 473 -------DDGGADSAQQQERSNNKESE 492 (492) Q Consensus 473 -------~~~~~~~~~~~~~~~~~~~e 492 (492) ....++.+.++...+-+.+. T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (558) T protein:vir:10 516 EPLPQEGDPAMEGMGEQPVDPDLEAQA 542 (558) T ss_pred cccCccCCchhccCCCCCcccccccch Confidence 00001111111111111111 No 241 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=85.05 E-value=0.056 Score=27.46 Aligned_cols=445 Identities=12% Similarity=0.110 Sum_probs=168.5 Q ss_pred hhhHHHHHHHHHhcCCceeccCCC-cHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc Q lcl|Aclame:pro 3 FIQLISQVAQALIKGGNILYPSQP-TQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPK 81 (492) Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~ 81 (492) .-||.---.++-.+..-++ .+.| +..+--..+ .+...-..-.-+..-++...+-+.+|+.+-.+++-+..+ T Consensus 1 m~~lfg~~i~~~~~~~~~~-s~~~~~~~dg~~~i--~~~~~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av----- 72 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGP-SFVQKDNLDGSQPV--SGGGYYGYTVDFDGQVRNEYQLISRYREMVLQPECDSAV----- 72 (533) T ss_pred CccccccccccccccccCC-CCCCCCccccccee--ecccccceeeecccccchHHHHHHHHHHHhhccchhhHH----- Confidence 1111111111111111122 2211 111100000 000000000000000111122334444444444433211 Q ss_pred cccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHHH----H----HHHHh-ccHHHHHHHHHHHH Q lcl|Aclame:pro 82 PVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVKR----I----DEVLG-NRFDDKLHSVLTGA 151 (492) Q Consensus 82 ~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~~----l----~~~~~-n~~~~~~~~~~~~~ 151 (492) ..||+. .+.-....|+.+..++.+..+. + +.+.. =+|+....+..|.+ T Consensus 73 ----------------------~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~W 130 (533) T protein:vir:10 73 ----------------------DDIVNETICGNFDDVPVSVELSNLKVSDKIKKLIREEFGEILRLLDFENRSYEIFRRW 130 (533) T ss_pred ----------------------HHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhh Confidence 112221 1122233455555444322222 2 22221 27788889999999 Q ss_pred HhcCeEEEEEEeCC----CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeec Q lcl|Aclame:pro 152 SNKGIEWLHPYLDE----EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPD 227 (492) Q Consensus 152 ~~~G~~~~~v~~d~----~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (492) .+.|+-|.+.-.|. +|-..+..+||+.+-+|.--. ......++..... .++ ......+|.+........ T Consensus 131 YVDgRi~fHkiid~~~pk~GI~ELr~lDPr~i~~vr~i~--~~~~~~~~~~~~~----~~v-~~~~~eyf~Ynp~g~~~~ 203 (533) T protein:vir:10 131 YVDGRLFYHKVIDPDNPQGGLIELRYIDPRKIRKINETE--QKRPEQLRGLPLN----QQL-SPKSAEYFLYDPKGLKNS 203 (533) T ss_pred hhcceEEEEEEecCCCccccceeeeeccccceeeeeeee--ccCCCccceeecc----hhh-hccceeeeeecccccccc Confidence 99999999976664 366788999999998765310 0111111110000 001 111122333332211110 Q ss_pred cccccc-cccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHH--HHHHHHHHHhcCCceEEEecCCcccchhh Q lcl|Aclame:pro 228 YSNNLE-NSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRR--LSDLSNTFKDSNELTYVLKNYDDQELPEF 304 (492) Q Consensus 228 ~~~~~~-~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~--~s~~~~~~~~~~~~~l~~~g~~~~~~~~~ 304 (492) ...... ........|. |.+| .++..-.|-++ ..+..+|++ +-|.+-.-+....|-.=+.-.+..+.++. T Consensus 204 ~~~~vkI~~dAI~y~hS-Gl~d----~~~~~i~syLh---kAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~ 275 (533) T protein:vir:10 204 TTQGLKIAPDSICYVHS-GIMD----LNKNMTLSHLH---KAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKN 275 (533) T ss_pred CCCceecchhheeeeec-ccee----CCCCceeccch---HhHHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCch Confidence 000000 0000001110 1010 01111123333 333344432 23344444444444332221111111111 Q ss_pred H-----H----hhhhccce--------------e------c--CCCCc-ceeeecccCH-HHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 305 K-----R----LLRYYGAI--------------K------V--SDNGG-VDTIQVEVPV-ENSKKYLDELYQKIMLFGQA 351 (492) Q Consensus 305 ~-----~----~~~~~~~~--------------~------~--~~~~d-~~~l~~~~~~-~~~~~~i~~l~~~i~~~a~~ 351 (492) + + ..++..+. . + -+||. .+.-|.+... -+...-+.-+++.++..-++ T Consensus 276 KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~DV~YF~kKLY~aLnV 355 (533) T protein:vir:10 276 KAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDFWLPRREGGRGTEITTLPGGQNLGELEDVKYFQKKLYKSLNV 355 (533) T ss_pred hHHHHHHHHHHhccceEEEeccCceecccchhhhhHhhhcccccCCCCccceeeccccCCcChHHHHHHHHHHHHHHhCC Confidence 1 1 11100000 0 0 11222 2222333221 23444567777888887777 Q ss_pred CCC--CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--Ccc----eeeeEEeCCCCCcCHH Q lcl|Aclame:pro 352 VDF--SSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK--GEH----KDVDISFNYNKVANTE 423 (492) Q Consensus 352 p~~--~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~--~~~----~~i~i~f~~~~p~d~~ 423 (492) |-- ..++.-+..-|..|-.-+.....-+.+.+..|..-+.++++.=+-+-|+- .+| ..|.+.|...-.-.+. T Consensus 356 P~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~El 435 (533) T protein:vir:10 356 PGSRLETETTFNVGRAAEITRDEVKFQKFVARLRKRFSELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAEL 435 (533) T ss_pred CccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHH Confidence 742 22211111122234444444556667777788888888777654444432 233 4577888655544444 Q ss_pred HHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHHHH--------HHhhccccC-----CCC Q lcl|Aclame:pro 424 LQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIEQEQTEY--------NKQLPNLDD-----GGA 477 (492) Q Consensus 424 e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~~~--------~~~~~~~~~-----~~~ 477 (492) ..++ ++..+ +| .+|.+++.+.+ -.++ +..++.++|++|..+. +...++..+ ..+ T Consensus 436 Ke~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~ 515 (533) T protein:vir:10 436 KEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQTDVEMKEIDKQIESEMESGIIADPAAEMDPAMAAGDPDAGGAPA 515 (533) T ss_pred HHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCCcchhhHHhcCCCCCcCCccc Confidence 4333 33333 24 47999999864 3333 3567777888776531 111111111 111 Q ss_pred CCCCcC--CCCCCCCCC Q lcl|Aclame:pro 478 DSAQQQ--ERSNNKESE 492 (492) Q Consensus 478 ~~~~~~--~~~~~~~~e 492 (492) +...++ +.+.+..+| T Consensus 516 ~~~~~~~~~~~~~~~~~ 532 (533) T protein:vir:10 516 EEVAPEGPDPSDERKAE 532 (533) T ss_pred ccCCCCCCCcchhhccC Confidence 100111 111111111 No 242 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=83.84 E-value=0.065 Score=27.09 Aligned_cols=342 Identities=8% Similarity=0.023 Sum_probs=131.2 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHH Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVD 108 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd 108 (492) |..++.++.-...+.. .+.+. ..... ....-+.......+|+ T Consensus 1 Mg~f~~~f~~~~~~~~------------------------~~~~~--~~~~~------------~~~~a~~~~~v~~~i~ 42 (385) T protein:vir:95 1 MGLFDSVFKRHSELSW------------------------MYDLE--FLQDK------------SKKAYLKQIALNTVVE 42 (385) T ss_pred CchhhhhhccCccccc------------------------ccchh--hhhcc------------chhhhhhhHHHHHHHH Confidence 2333333221111100 00000 00000 0000011233455677 Q ss_pred HHHHhhhcCCeeecCCchhHHH-HHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE--EEEEcccceE Q lcl|Aclame:pro 109 QKVSYIVGKPIAFKHTDDEVVK-RIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK--LFRVPAEQGI 180 (492) Q Consensus 109 ~~~~~l~g~~~~~~~~d~~~~~-~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~--i~~~~p~~~~ 180 (492) ..++-+..-|+.+--.+..... ....+.. | .-..+...++.+.+.+|.||++... ++... ..++.|... T Consensus 43 ~ia~~ia~~p~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~--~~~~~~~~~~~~~~~~- 119 (385) T protein:vir:95 43 MVARTISQSEFRVMKNNTKEKGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKND--EGHFFVADDFEKEDEL- 119 (385) T ss_pred HHHHHHcccceeeeecCccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEec--CCCeeecccccccccc- Confidence 7777777777765322222112 2222221 3 2345667778899999999976643 33321 111111111 Q ss_pred EEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCc----- Q lcl|Aclame:pro 181 PIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN----- 255 (492) Q Consensus 181 ~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn----- 255 (492) .++.. . ++. +.+ ....+. ...+.. -|++++.. T Consensus 120 ~~~~~------~----~~~------~~~-~~~~~~------------------------~~~~~~--eiih~~~~~~~~~ 156 (385) T protein:vir:95 120 GLYSH------R----FTN------VLV-NDFEFK------------------------RVFTMD--DVIYLKYNNQKLD 156 (385) T ss_pred ccccc------c----cee------eee-ccccee------------------------eeeccc--cEEEecCCCCCcc Confidence 11100 0 000 000 000000 000111 12333321 Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC--ceEEEecC---CcccchhhHHhhh---------hccceecCCCCc Q lcl|Aclame:pro 256 DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNE--LTYVLKNY---DDQELPEFKRLLR---------YYGAIKVSDNGG 321 (492) Q Consensus 256 ~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~--~~l~~~g~---~~~~~~~~~~~~~---------~~~~~~~~~~~d 321 (492) ..|.|.++.....+ ...++ ...+.+. .++.+.+. +.+....++..+. ...++.++++.+ T Consensus 157 ~~G~s~~~~~~~~i---~~~~~----~~~~~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~i~~l~~g~~ 229 (385) T protein:vir:95 157 AFSLGLFEDYGEIF---GRMID----LQMLNNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAFQNNTIAVVPLTEGLA 229 (385) T ss_pred cccchHHHHHHHHH---HHHHH----HHHhcCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhhhhcCCceEEcCCCce Confidence 12445444333333 22222 2222222 33333332 1122222222211 122444566656 Q ss_pred ceeeeccc------CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 322 VDTIQVEV------PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLW 395 (492) Q Consensus 322 ~~~l~~~~------~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~ 395 (492) .+.++... ....+.+..+..+..|+..=++|..-.....++.+...+ ..+..+|.-.++ T Consensus 230 ~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~sn~e~~~~---------------~~~~~~l~P~~~ 294 (385) T protein:vir:95 230 YEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVLGEMADLEKTIE---------------SYLQFCINPLLR 294 (385) T ss_pred eEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCcCHHHHHH---------------HHHHHHHHHHHH Confidence 55554221 134456666677777887777876443221122222122 222333333333 Q ss_pred HHHHHhcc----CC--cceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHH Q lcl|Aclame:pro 396 FVFEHFDI----KG--EHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFV--EDLQAELERIEQEQTEY 465 (492) Q Consensus 396 li~~~~~~----~~--~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~ 465 (492) .+...++. .. ....+++.+..-+..|..+.++++.++ .|+++.-.+++.++.- +++. -++. T Consensus 295 ~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~--gd~~------- 365 (385) T protein:vir:95 295 KIEAELNSKFFYQDEYLNDDMHIKVVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPADDPE--LDKF------- 365 (385) T ss_pred HHHHHHHhhcCChhhcccceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC--Ccee------- Confidence 33332221 11 112455666677778999999999887 4789988888877542 1100 0000 Q ss_pred HHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 466 NKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) ..+.+. ... +..+.+++.+| T Consensus 366 ---~~~~n~--~~~--~~~kgge~~~e 385 (385) T protein:vir:95 366 ---IITKNL--QSA--DAFKGGESNEE 385 (385) T ss_pred ---eecccc--eec--ccccCCCCCCC Confidence 000000 000 01112222222 No 243 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=83.37 E-value=0.069 Score=26.95 Aligned_cols=421 Identities=15% Similarity=0.091 Sum_probs=166.4 Q ss_pred ChhhhHHHHH-HH-HHhcCCceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 1 MQFIQLISQV-AQ-ALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIK-----QHLEKLPEISIGQEYYEQR 73 (492) Q Consensus 1 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-----~~~~~~~~~~~~~~YY~G~ 73 (492) ++|.+--... .+ ...+.+ .=...|+..+=.-.+......+......+...+. +.++-+.+|+.+-.+++-+ T Consensus 1 ~~~w~~~de~~~~~~~~~~~--~S~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd 78 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPV--RSFSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIPVKELIKSYRALAEYHEVD 78 (511) T ss_pred CCCccchhhhhhhhhccCCc--ccccCCCCCCCceEEecccccceecceeccccccccCccchHHHHHHHHHHhhccchh Confidence 4443322110 00 111110 0011111100000000000000000000000000 0012223444444433333 Q ss_pred CccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHH--------HHHHHHh-ccHHHH Q lcl|Aclame:pro 74 PDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVK--------RIDEVLG-NRFDDK 143 (492) Q Consensus 74 ~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~--------~l~~~~~-n~~~~~ 143 (492) ..+ ..||+. .+.--...|+.+..++.+..+ ..+.+.. =+|+.. T Consensus 79 ~Av---------------------------~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~ 131 (511) T protein:vir:56 79 DAI---------------------------QEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVSLLQMRKH 131 (511) T ss_pred hHH---------------------------HHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchh Confidence 211 112221 111123455555544333211 2222221 277888 Q ss_pred HHHHHHHHHhcCeEEEEEEeCCC-CceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecc Q lcl|Aclame:pro 144 LHSVLTGASNKGIEWLHPYLDEE-GEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENG 222 (492) Q Consensus 144 ~~~~~~~~~~~G~~~~~v~~d~~-g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (492) ..+..|.+.+.|+.|.+.-.|++ |-..+..+||+.+-.|..- ..+..+.+++... ...+|.+... T Consensus 132 ~~~~fR~WYVDgRi~fHkiid~k~GI~eLr~lDPr~i~~vr~i-------------~~~~~~~~~v~~~-~~ey~~Y~~~ 197 (511) T protein:vir:56 132 GYKWFRKWYVDSRIYFHKILDKDNNIIELRPLNPMKMELVREI-------------QKETIDGVEVVKG-TLEYYVYKQS 197 (511) T ss_pred hhHHHhhhhhcceEEEEEEeccccceeehhhcCcccchhhhhh-------------hcccccccccccc-eeeeeEecCC Confidence 89999999999999999877654 5567888999888765431 1111222222222 1233333332 Q ss_pred eeeeccccccccccccceeccCCccce--Eee---------cCccCCCCcHHHHHHHHHHHHHH--HHHHHHHHHhcCCc Q lcl|Aclame:pro 223 SLIPDYSNNLENSKTHFSTGSWGKIPF--IPF---------KNNDLEISDIFMYKTLIDAYNRR--LSDLSNTFKDSNEL 289 (492) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~---------~nn~~~~s~~~~v~~liD~~~~~--~s~~~~~~~~~~~~ 289 (492) ........... ...+.-=+||. |.| .++....|-++. .+..+|++ +-|.+-.-+....| T Consensus 198 ~~~~~~~~~~~-----~~~~~~vkI~~daI~y~hSGL~d~~~~~g~i~syLhk---AiKp~NQLkm~EDAlVIYRitRAP 269 (511) T protein:vir:56 198 DYKMPSWMSAT-----NRAQTSFRIPKDAIVFAHSGLMRGCADDPYIIGYLDR---AIKPANQLKMLEDALVIYRLARAP 269 (511) T ss_pred CcccCcccccc-----cccccceeechhheeeecccceeccCCCCeeeccchh---hhHHHHhhHHHHhhHHHHhhhccc Confidence 11100000000 00000011221 111 122223444443 33333322 23444444444444 Q ss_pred eEEEecCCcccchhhH-----Hh----hhhccce--------------e------c--CCCCc-ceeeecccCH-HHHHH Q lcl|Aclame:pro 290 TYVLKNYDDQELPEFK-----RL----LRYYGAI--------------K------V--SDNGG-VDTIQVEVPV-ENSKK 336 (492) Q Consensus 290 ~l~~~g~~~~~~~~~~-----~~----~~~~~~~--------------~------~--~~~~d-~~~l~~~~~~-~~~~~ 336 (492) -.=+.-.+..+.++.+ +. .++..+. . + -+||. .+.-|.+... -+... T Consensus 270 eRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~ 349 (511) T protein:vir:56 270 ERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTTNAMSMLEDYYLPRREGSKGTEVSTLPGGQSLGDIE 349 (511) T ss_pred cceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchhhhhhHhhhcccccCCCCccceeeccccCCcChHH Confidence 3322211111111111 11 1110000 0 0 11222 2222333221 23445 Q ss_pred HHHHHHHHHHHHhCCCCC--Ccc----ccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--Ccc Q lcl|Aclame:pro 337 YLDELYQKIMLFGQAVDF--SSD----KFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK--GEH 407 (492) Q Consensus 337 ~i~~l~~~i~~~a~~p~~--~~~----~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~--~~~ 407 (492) -++-+++.++..-++|-- ..+ .|+ |. |..|-.-+.....-+.+.+..|..-+.++++.=+-+-|+- .+| T Consensus 350 DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr--~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW 427 (511) T protein:vir:56 350 DVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQ--GAEITRDELKFTKFVKRLQTKFETVITDPLKHQLIVNNIITEEEW 427 (511) T ss_pred HHHHHHHHHHHHhCCCcccccCCCCcccccccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHH Confidence 677778888887777743 222 122 22 2344444445556667777788888888776654444432 233 Q ss_pred ----eeeeEEeCCCCCcCHHHHHH-------HHHHHh---c-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 408 ----KDVDISFNYNKVANTELQVQ-------TAQQSM---G-IVSHETVLENH-PFVE-DLQAELERIEQEQTEYNKQLP 470 (492) Q Consensus 408 ----~~i~i~f~~~~p~d~~e~~~-------~~~k~~---g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~~~~~~~~ 470 (492) ..|.+.|...-.-.+...++ ++..+. | .+|.+++.+.+ ..++ +..++.++|++|..+..-+ T Consensus 428 ~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~~-- 505 (511) T protein:vir:56 428 DANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYSHKYIQKNILRLSDDQITAMQSEIDEEETNPRFQ-- 505 (511) T ss_pred HHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccccchHHHHHHHhccCHHHHHHHHHHHHHhhcCCCCC-- Confidence 45778886555444444333 333332 4 47999999864 3332 2456666666665442111 Q ss_pred cccCCCCCC Q lcl|Aclame:pro 471 NLDDGGADS 479 (492) Q Consensus 471 ~~~~~~~~~ 479 (492) . +..+- T Consensus 506 ~---~e~~f 511 (511) T protein:vir:56 506 Q---DDQGF 511 (511) T ss_pred C---cccCC Confidence 1 11111 No 244 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=83.24 E-value=0.07 Score=26.91 Aligned_cols=323 Identities=10% Similarity=0.062 Sum_probs=123.7 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccc--ccchHHHHHHHHHHhhhcCCee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRM--ITNFHANLVDQKVSYIVGKPIA 120 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri--~~n~~~~ivd~~~~~l~g~~~~ 120 (492) +. -..+...+-.+.-.- ...... ......+ -......+|+.+++-+..-|+. T Consensus 1 Mg-----------------~f~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~ 54 (378) T protein:vir:16 1 MN-----------------LFGKVVSFSRGKLNN-DTQRVT--------AWQNEAVEYTSAFVTNIHNKIANEITKVEFN 54 (378) T ss_pred Cc-----------------cchhhhhhhcccccC-Ccceee--------ecccchhhHHHHHHHHHHHHHHhhhhhCcee Confidence 00 000111111110000 000000 0000001 1223444566666666666764 Q ss_pred ec---C-----------CchhHHHHHHHHHhc---cHHHHHHHHHHHHHhcCeEEEEEEeCC-CCceEEEEEcccceEEE Q lcl|Aclame:pro 121 FK---H-----------TDDEVVKRIDEVLGN---RFDDKLHSVLTGASNKGIEWLHPYLDE-EGEFKLFRVPAEQGIPI 182 (492) Q Consensus 121 ~~---~-----------~d~~~~~~l~~~~~n---~~~~~~~~~~~~~~~~G~~~~~v~~d~-~g~~~i~~~~p~~~~~i 182 (492) +- . .+.....+|.. .-| ....+...+...++.+|.+|++..++. .|++. .+-|.... T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~l~~lL~~-~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~--~l~~~~~~-- 129 (378) T protein:vir:16 55 HVKYKKSDVGSDTLISMAGSDLDEVLNW-SPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELL--DLLFADDK-- 129 (378) T ss_pred EEEEcccccccccccccccchHHHHHhh-cCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEE--EEEecCCe-- Confidence 31 0 01112222221 112 344566677889999999998754443 23321 11111000 Q ss_pred ecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcH Q lcl|Aclame:pro 183 WTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDI 262 (492) Q Consensus 183 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~ 262 (492) .+ +.... |+++++.-.+.... T Consensus 130 -----------------------~~-~~~~d-----------------------------------iih~r~~~~~~~~~ 150 (378) T protein:vir:16 130 -----------------------KE-YKPEE-----------------------------------LVRLTSPFYINEDT 150 (378) T ss_pred -----------------------eE-ecccc-----------------------------------eEEecCccCccchh Confidence 00 00011 22222211112222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC-Ccccchh----hHHhh-------hhccceecCCCCcceeeecccC Q lcl|Aclame:pro 263 FMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY-DDQELPE----FKRLL-------RYYGAIKVSDNGGVDTIQVEVP 330 (492) Q Consensus 263 ~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~-~~~~~~~----~~~~~-------~~~~~~~~~~~~d~~~l~~~~~ 330 (492) ..+..+.++++...+. . ....++...+. +.+...+ +.... ..++++.++++.+++.++.... T Consensus 151 s~l~~~~~~i~~~~~~---~---~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~ 224 (378) T protein:vir:16 151 SILDNALASIQTKLEQ---G---KLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYS 224 (378) T ss_pred HHHHHHHHHHHHHHhc---C---ccceeeEeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChh Confidence 3344444444432221 1 11222333332 1121112 22221 1234566666666555544333 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------ Q lcl|Aclame:pro 331 VENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK------ 404 (492) Q Consensus 331 ~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~------ 404 (492) ...+ ...+.++..|+..=++|..-. .+..|.... ...+..+|.-.++.+...+..+ T Consensus 225 ~~~~-~~~~~~~~~Ia~~fgVPp~~l---~g~~~e~~~--------------~~f~~~tl~P~~~~ie~~l~~kLl~~~e 286 (378) T protein:vir:16 225 VLNK-DEIDLIKSELLTGYFMNENIL---LGTASQEQQ--------------IYFYNSTIIPLLIQLEKELTYKLISTNR 286 (378) T ss_pred hhhH-HHHHHHHHHHHHHhCCCHHHh---cCCchHHHH--------------HHHHHHHHHHHHHHHHHHHHhhcCChhh Confidence 3333 344566677777767765332 222221111 1123333433333333322210 Q ss_pred -------CcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHH-----HHHHHHHHHHHHHHh Q lcl|Aclame:pro 405 -------GEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQA-----ELERIEQEQTEYNKQ 468 (492) Q Consensus 405 -------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~-----E~~ri~~E~~~~~~~ 468 (492) ....++++.+..-.-.|..+.++.+.++. |+++.-.+.++++. +++.+. -+..+.. T Consensus 287 ~~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~-------- 358 (378) T protein:vir:16 287 RRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKN-------- 358 (378) T ss_pred hhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccccccccc-------- Confidence 01223556667777788999999988774 78998888887753 222110 1111100 Q ss_pred hccccCCCCCCCCcCCCCCCCCC-C Q lcl|Aclame:pro 469 LPNLDDGGADSAQQQERSNNKES-E 492 (492) Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~-e 492 (492) . .....++.+..++++++ | T Consensus 359 ---~--~~~~~~~~~~~~~~e~~ne 378 (378) T protein:vir:16 359 ---L--SDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred ---h--hhhcCccCCCCCCCCCCCC Confidence 0 00011111112222222 2 No 245 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=78.12 E-value=0.12 Score=25.68 Aligned_cols=324 Identities=10% Similarity=0.070 Sum_probs=121.6 Q ss_pred HHHhcCCCcccccccccccccccccccccccc--ccchHHHHHHHHHHhhhcCCeeec---CCc---hh----H-HHHHH Q lcl|Aclame:pro 67 QEYYEQRPDIVKEPKPVDATGAVDPLKPDDRM--ITNFHANLVDQKVSYIVGKPIAFK---HTD---DE----V-VKRID 133 (492) Q Consensus 67 ~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri--~~n~~~~ivd~~~~~l~g~~~~~~---~~d---~~----~-~~~l~ 133 (492) ..++..-...- + .................+ -......+|+.+++-+..-|+.+- ..+ +. . ..+.. T Consensus 1 Mg~f~~~~~f~-~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (378) T protein:vir:93 1 MNLFGKVVSFS-R-GKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAGSDLDE 78 (378) T ss_pred Cccchhhhhhh-c-cccCCCcceeeecccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccccccccccccccchHHH Confidence 11111100000 0 000000000000000001 112344456667776666776541 110 00 1 11222 Q ss_pred HHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeC-CCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEE Q lcl|Aclame:pro 134 EVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLD-EEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVE 207 (492) Q Consensus 134 ~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d-~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~ 207 (492) .+.. | ....+...+..+.+.+|.||+++.++ ..|++.. +-| + . ..++ T Consensus 79 lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~--l~~-------~-~-----------------~~~~ 131 (378) T protein:vir:93 79 VLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLD--LLF-------A-D-----------------DKKE 131 (378) T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEE--EEe-------c-C-----------------CeeE Confidence 2221 3 23456666788999999999875443 3333211 101 0 0 0000 Q ss_pred EEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 208 YWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSN 287 (492) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~ 287 (492) +.... |+++++.-.+......+..+..+++...+. . .. T Consensus 132 -~~~~d-----------------------------------iih~r~~~~~~~~~s~l~~~~~~i~~~~~~---~---~~ 169 (378) T protein:vir:93 132 -YKTEE-----------------------------------LVRLTSPFYINEDTSILDNALASIQTKLEQ---G---KL 169 (378) T ss_pred -eccce-----------------------------------eEEecCccccchhhHHHHHHHHHHHHHHhc---C---cc Confidence 00111 122221111111222333333343332211 0 11 Q ss_pred CceEEEecC-CcccchhhH----Hhh-------hhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhCCCCCC Q lcl|Aclame:pro 288 ELTYVLKNY-DDQELPEFK----RLL-------RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFS 355 (492) Q Consensus 288 ~~~l~~~g~-~~~~~~~~~----~~~-------~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~ 355 (492) ..++...+. +.+...+.+ ... ..++++.++++.+++.++.......+ ...+..++.|+..=++|..- T Consensus 170 ~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~ 248 (378) T protein:vir:93 170 RGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENI 248 (378) T ss_pred cceeeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceEcCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHH Confidence 122333332 121112212 111 12345566666555555433333333 34556677777777776533 Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CcceeeeEEeCCCCCcCH Q lcl|Aclame:pro 356 SDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK-------------GEHKDVDISFNYNKVANT 422 (492) Q Consensus 356 ~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-------------~~~~~i~i~f~~~~p~d~ 422 (492) . .+..|... ....+..+|.-.++.+...+..+ ....++++.+..-+-.|. T Consensus 249 l---~g~~~e~~--------------~~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~ 311 (378) T protein:vir:93 249 L---LGTATQEQ--------------QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATL 311 (378) T ss_pred h---cCCcHHHH--------------HHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCH Confidence 2 22222111 11223334444444433332210 011235555566777899 Q ss_pred HHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHH-----HHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCC-CCC Q lcl|Aclame:pro 423 ELQVQTAQQSM--GIVSHETVLENHPFV--EDLQA-----ELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNK-ESE 492 (492) Q Consensus 423 ~e~~~~~~k~~--g~vs~et~l~~l~~v--~D~~~-----E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e 492 (492) .+.++++.++. |+++.-.+.++++.- ++.+. -+..+..- +.....+....++++ .+| T Consensus 312 ~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~-------------~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:93 312 KELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANLNAVAVKNL-------------SDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeeccccccccch-------------hhhcCccCCCCCCCCCCCC Confidence 99999988874 789988888877532 22110 01111000 000111111111111 122 No 246 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=73.34 E-value=0.17 Score=24.78 Aligned_cols=328 Identities=10% Similarity=0.059 Sum_probs=120.8 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccc--cchHHHHHHHHHHhhhcCCee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMI--TNFHANLVDQKVSYIVGKPIA 120 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~--~n~~~~ivd~~~~~l~g~~~~ 120 (492) +.+ + .....+..+.- ..............+. ......+|+.+++-+..-|+. T Consensus 1 Mg~---f--------------~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~v~~IA~~iA~lp~~ 54 (378) T protein:vir:94 1 MNL---F--------------GKVVSFSRGKL---------NNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFN 54 (378) T ss_pred CCc---c--------------ccchhcccccc---------cCCcceeeeeccchhHHHHHHHHHHHHHHHhhhhhCcee Confidence 000 0 00000110000 0000000000001111 123445666666666666765 Q ss_pred ec---CCch---h----H-HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEE-EeCCCCceEEEEEcccceEEEe Q lcl|Aclame:pro 121 FK---HTDD---E----V-VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHP-YLDEEGEFKLFRVPAEQGIPIW 183 (492) Q Consensus 121 ~~---~~d~---~----~-~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v-~~d~~g~~~i~~~~p~~~~~i~ 183 (492) +- ..+. . . ..+...+.. | ....+...+...++.+|.||+++ +.+..|++.. +-|... T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~--l~p~~~---- 128 (378) T protein:vir:94 55 HVKYKKSDVGSDTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLD--LLFADD---- 128 (378) T ss_pred eEEEcccCcccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEE--EEecCC---- Confidence 31 1110 0 0 112222221 3 23456667788999999999864 4444444321 111000 Q ss_pred cCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHH Q lcl|Aclame:pro 184 TDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIF 263 (492) Q Consensus 184 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~ 263 (492) ..+ +.... |+++++.-.+..... T Consensus 129 ---------------------~~~-~~~~d-----------------------------------iiH~~~~~~~~~g~s 151 (378) T protein:vir:94 129 ---------------------KKE-YKPEE-----------------------------------LVRLTSPFYINEDTS 151 (378) T ss_pred ---------------------eeE-eeeee-----------------------------------eEEecCcCCccchhH Confidence 000 00001 122221111111122 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC-cccchhhH----Hhh-------hhccceecCCCCcceeeecccCH Q lcl|Aclame:pro 264 MYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD-DQELPEFK----RLL-------RYYGAIKVSDNGGVDTIQVEVPV 331 (492) Q Consensus 264 ~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~-~~~~~~~~----~~~-------~~~~~~~~~~~~d~~~l~~~~~~ 331 (492) ++..+..+++...+. . ...-++...+.- .+...+.+ ... ..++++.++++.+++.++..... T Consensus 152 ~l~~~~~~i~~~~~~---~---~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~ 225 (378) T protein:vir:94 152 ILDNALASIQTKLEQ---G---KLRGLLKINAFLDIDNTQEYREKALTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSV 225 (378) T ss_pred HHHHHHHHHHHHHhc---c---cccceeeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEEccCChhh Confidence 333333444333221 1 112233333321 11112222 111 12245556655555544433333 Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------- Q lcl|Aclame:pro 332 ENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK------- 404 (492) Q Consensus 332 ~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~------- 404 (492) ..+ ...+.++..|+..=++|..-. .+..|.... ...+..+|.-.++.+...+..+ T Consensus 226 ~~~-~~~~~~~~~Ia~~fgVP~~~l---~~~~se~~~--------------~~f~~~tL~P~~~~ie~~l~~~Ll~~~er 287 (378) T protein:vir:94 226 LNK-DEIDLIKSELLTGYFMNENIL---LGTASQEQQ--------------IYFYNSTIIPLLIQLEKELTYKLISTNRR 287 (378) T ss_pred hhH-HHHHHHHHHHHHHhCCCHHHh---cCChHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhcCChhHh Confidence 333 344566677777777765432 222221111 1123333333333333222110 Q ss_pred ------CcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccC Q lcl|Aclame:pro 405 ------GEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDD 474 (492) Q Consensus 405 ------~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~ 474 (492) ....++++.+..-+-.|..+.++++.++. |+++.-.+.++++. +++.+.-+-.. ...+... T Consensus 288 ~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~---------n~~~~~~ 358 (378) T protein:vir:94 288 RVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIANL---------NAVAVKN 358 (378) T ss_pred hhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecc---------ccccccc Confidence 01123455556677789999999988874 78998888877643 22211100000 0000000 Q ss_pred -CCCCCCCcCCCCCCC-CCC Q lcl|Aclame:pro 475 -GGADSAQQQERSNNK-ESE 492 (492) Q Consensus 475 -~~~~~~~~~~~~~~~-~~e 492 (492) .....++....++++ .+| T Consensus 359 ~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 359 LSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred chhhcCCcCCCCCCCCCCCC Confidence 000111111111111 122 No 247 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=72.29 E-value=0.18 Score=24.61 Aligned_cols=351 Identities=11% Similarity=-0.066 Sum_probs=118.7 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~ 122 (492) +.+-.++ ..++..-... ......-. ..-...-+.+.-...+|+..++-+..-|+.+. T Consensus 1 Mgl~d~~--------------------~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~ 57 (395) T protein:vir:96 1 MGILDFF--------------------SFKKSGTLSD--DDSGSTTS-EKLTNVVLKEDALYKCVNYLARIISKSTFRIK 57 (395) T ss_pred Ccchhhh--------------------cCCCCccccc--cccccchh-hhcchhhhhhHHHHHHHHHHHHhhccceeEEE Confidence 2222211 1111100000 00000000 00000001123344466777777766677664 Q ss_pred CCchh--HHHHHH-HHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEE Q lcl|Aclame:pro 123 HTDDE--VVKRID-EVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAF 194 (492) Q Consensus 123 ~~d~~--~~~~l~-~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 194 (492) ..+.. ....+. .+.. | ....+...+...++.+|.+|+++..+..+. +. ..+++.. .... T Consensus 58 ~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~-----~~--~~~~~~~-~~~~----- 124 (395) T protein:vir:96 58 APEKLTENQKDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIY-----VA--DAFTQDK-KLSG----- 124 (395) T ss_pred eCCccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCcee-----cC--Ccccccc-cccc----- Confidence 32211 111122 2221 3 234566777888999999999887654221 10 0111000 0000 Q ss_pred EEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCc-----cCCCCcHH---HHH Q lcl|Aclame:pro 195 IRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIF---MYK 266 (492) Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn-----~~~~s~~~---~v~ 266 (492) .+++... +..|.+.. .+..--|++|+.+ ..+.+.+. .++ T Consensus 125 ~~~~~v~------------~~~~~~~~---------------------~~~~~dvih~k~~~~~~~~~~~~~~~~~~~~~ 171 (395) T protein:vir:96 125 NKFKVSR------------VQGQTYEK---------------------IFTFDQVIYLKNDNSDLMLKVESLWEEYGELL 171 (395) T ss_pred ceeeeee------------eccceeee---------------------EeccCceEEecccCCccccccccccchHHHHH Confidence 0000000 00000000 0000012333221 11222222 222 Q ss_pred HHHHHHHHHH---HHHHHHHHhcCCceEEEecCCcccchhhHH---hh----hhc--cceecCCCCcceeeecccCH-H- Q lcl|Aclame:pro 267 TLIDAYNRRL---SDLSNTFKDSNELTYVLKNYDDQELPEFKR---LL----RYY--GAIKVSDNGGVDTIQVEVPV-E- 332 (492) Q Consensus 267 ~liD~~~~~~---s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~---~~----~~~--~~~~~~~~~d~~~l~~~~~~-~- 332 (492) .+.-+..... .-..+.......+..++.-.+....+.... .. ... .++.++++.+.+.++..... . T Consensus 172 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~ 251 (395) T protein:vir:96 172 GHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGRQPKSDKDFFKRTIEKIRTESVVGIPVTANTNYEEYGSKNTGSVK 251 (395) T ss_pred HHHHHHHHHHHHHHHHhhhcccccccceeeccCchhhHHHHHHHHHHHHHHhhcCCcceEEccCCceeEecccChhhhhh Confidence 2222221111 112222222222222322212211111111 11 111 12334444443333322111 1 Q ss_pred ----HHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c Q lcl|Aclame:pro 333 ----NSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD-----I 403 (492) Q Consensus 333 ----~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-----~ 403 (492) .+........+.|+..=++|..-.....++.+...+. .+..+|.-.+..+...+. . T Consensus 252 ~e~~~~~~~~~~~~~eIa~~fgVPp~~l~~~~sn~e~~~~~---------------f~~~~L~P~~~~ie~~l~~~Ll~~ 316 (395) T protein:vir:96 252 SYVDDIKKLKDQYMAEFAEMLGIPISLLHGDIADNQKNYEL---------------LLEGPIESLITNIVDGLEYAIFDK 316 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCccHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhcCCh Confidence 1222223334455555566654432111222221111 222222222222222211 1 Q ss_pred CCcceeeeEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCC Q lcl|Aclame:pro 404 KGEHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADS 479 (492) Q Consensus 404 ~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~ 479 (492) ..-...+.+.|+.-+..|..+.++++.++. |+++.-.++++++. ++++. .+++- ......+... T Consensus 317 ~e~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~--gD~~~-----~~~N~~~~~~----- 384 (395) T protein:vir:96 317 SETLEGSFIKVTGLKNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGL--GKVLY-----MTKNYESVLE----- 384 (395) T ss_pred hhhcCceeEeecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC--Cceee-----ecccceechh----- Confidence 111123456777888899999999998874 78898888877643 22211 00000 0000011111 Q ss_pred CCcCCCCCCCCCC Q lcl|Aclame:pro 480 AQQQERSNNKESE 492 (492) Q Consensus 480 ~~~~~~~~~~~~e 492 (492) +.+++++++| T Consensus 385 ---~gge~~~~~~ 394 (395) T protein:vir:96 385 ---RGGEVDEEVE 394 (395) T ss_pred ---ccCCCCCCCC Confidence 1111222222 No 248 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=69.82 E-value=0.22 Score=24.22 Aligned_cols=412 Identities=15% Similarity=0.128 Sum_probs=163.0 Q ss_pred ChhhhHHHHHH--------HHHhcCCceeccCCCcHHH----------------HHHHHhhcCCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVA--------QALIKGGNILYPSQPTQTE----------------IFDAIVRTNNKPETLEEMIVRYIKQH 56 (492) Q Consensus 1 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~i~~~ 56 (492) |.+.+|..-.+ +...+ +..=...|+..+ .++...-......... . T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~--~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~~~~~~~~~----~----- 69 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKQ--GHESIATPKKDDGATEIEAREGESSYNALMQQFFGIDNNISGTK----D----- 69 (516) T ss_pred CCchHhcccccchhhHHHHhhhcC--CCCcccCCCCccCceeeecCcccccccceeeeeecccCccccHH----H----- Confidence 66666654321 11111 111111221111 1111111111111111 1 Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHHH---- Q lcl|Aclame:pro 57 LEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVKR---- 131 (492) Q Consensus 57 ~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~~---- 131 (492) -+.+|+.+-.+++-+..+ ..||+. .+.--...|+.+..++.+..+. T Consensus 70 --LI~~YR~ma~~pEvd~Av---------------------------~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~k 120 (516) T protein:vir:10 70 --LINTYRQLTNNPEVERAV---------------------------ANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDK 120 (516) T ss_pred --HHHHHHHhhhccchhHHH---------------------------HHhhcceeEecCCCceEEEEecccccchHHHHH Confidence 123444444444433211 112221 1111234566665544332222 Q ss_pred H----HHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeC--CCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccce Q lcl|Aclame:pro 132 I----DEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLD--EEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENET 204 (492) Q Consensus 132 l----~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d--~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~ 204 (492) + +.+.. =+|+....+..|.+.+.|+.|++...| ++|-..+..++|+.+..+.-- ..++.. T Consensus 121 I~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k~GI~elr~lDPr~i~~vR~i-------------~~~~~~ 187 (516) T protein:vir:10 121 ILEEFDEICRLLDASRKLDTLFRRWYIDSRIFFHKIMPNPKEGIVELRRLDPRHVEYYREI-------------VTSDVG 187 (516) T ss_pred HHHHHHHHHHHhccchhhhHHHHhhhhcceEEEEEEecCcccceeeeeeeCCcceeeEEee-------------ecccCc Confidence 2 22221 277888899999999999999986665 356677899999998775431 111111 Q ss_pred eEEEEecceEEEEEEecceeeeccccccccccccceeccCCccce--EeecCcc-------CCCCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 205 KVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFKNND-------LEISDIFMYKTLIDAYNRR 275 (492) Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~nn~-------~~~s~~~~v~~liD~~~~~ 275 (492) .+.+... ...+|.+..+.......+ ... .++.-=+||- |.|.... .-.|-++ ..+..+|++ T Consensus 188 ~~~v~~~-~~e~~~Y~~~~~~~~~~g--~~~----~~~~~ikI~~daI~y~hSGl~d~~~~~i~syLh---kAiKp~NQL 257 (516) T protein:vir:10 188 GTSVVKG-YREFFVYTTGNEGYAYNG--RLF----EPNTRIKIPRSAIVYAHSGLQDCSDRGIVGYLH---NAVKPANQL 257 (516) T ss_pred chhhhhc-eeeeeeeecCccceeccc--ccc----CCCCceecchhheeeeecCcccCCCCceeceeh---hhhHhHHhh Confidence 1111100 001111111110000000 000 0000001111 2222110 0123333 333334432 Q ss_pred --HHHHHHHHHhcCCceEEEecCCcccchhhH-----Hh----hhhccce--------------e------c--CCCCc- Q lcl|Aclame:pro 276 --LSDLSNTFKDSNELTYVLKNYDDQELPEFK-----RL----LRYYGAI--------------K------V--SDNGG- 321 (492) Q Consensus 276 --~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~~--------------~------~--~~~~d- 321 (492) +-|.+-.-+....|-.=+.-.+..+.++.+ +. .++..+. . + -+||. T Consensus 258 km~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrg 337 (516) T protein:vir:10 258 KLLEDALVIYRITRAPERRVFYIDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSV 337 (516) T ss_pred HHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcc Confidence 234444444444443322211211222111 11 0100000 0 0 11222 Q ss_pred ceeeecccCH-HHHHHHHHHHHHHHHHHhCCCCC--Cccc-cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 322 VDTIQVEVPV-ENSKKYLDELYQKIMLFGQAVDF--SSDK-FG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWF 396 (492) Q Consensus 322 ~~~l~~~~~~-~~~~~~i~~l~~~i~~~a~~p~~--~~~~-~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~l 396 (492) .+.-|.+... -+...-+.-+++.++..-++|-- ..++ +. +...+..|-.-+.....-+.+.+..|..-+..+++. T Consensus 338 TEItTLpGgqnlgem~DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lF~~~L~~ 417 (516) T protein:vir:10 338 TEVTSLPGAQTMGEMDDVRWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDELDFRKFIVQLQHNFEEIFLDPLKT 417 (516) T ss_pred cceeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2222333221 23445677788888887778743 2222 11 011223343333334455566666677766666655 Q ss_pred HHHHhcc--CCcc----eeeeEEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHH Q lcl|Aclame:pro 397 VFEHFDI--KGEH----KDVDISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELER 457 (492) Q Consensus 397 i~~~~~~--~~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~r 457 (492) =+-+-|+ ..+| ..|.+.|...-.-.+...++ ++..+ +| .+|.+++.+.+ ...+ +..+|.++ T Consensus 418 qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~ 497 (516) T protein:vir:10 418 NLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGKYVSHDYVMKNILQMTDEQIAQEEKQ 497 (516) T ss_pred HhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhHHHHHHHH Confidence 3333332 2233 35677886554444444333 33333 34 69999999865 3332 24556666 Q ss_pred HHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 458 IEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 458 i~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) |++|..+.. + .++++ +.| T Consensus 498 I~~E~~~~~-----~----~~p~~--------e~~ 515 (516) T protein:vir:10 498 IEKEANVKR-----F----QNPEN--------EDD 515 (516) T ss_pred HHHhhhCCC-----C----CCCCc--------ccc Confidence 666653210 0 01111 111 No 249 >protein:vir:345 Length: 663 # NCBI annotation: virion structural protein # Family: family:all:3199 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203459;genbank:gi:15320615;genbank:GeneID:921720 Probab=65.15 E-value=0.29 Score=23.55 Aligned_cols=432 Identities=13% Similarity=0.113 Sum_probs=183.8 Q ss_pred hcCCceeccCCCcHHHHHHHHhhcCCChhhHH-HHHH---HHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccc Q lcl|Aclame:pro 15 IKGGNILYPSQPTQTEIFDAIVRTNNKPETLE-EMIV---RYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVD 90 (492) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~---~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~ 90 (492) |..+ .+..|.. .|+.+. +|+. ..-+++.+-..+.+...+-|.+...-.+- T Consensus 1 m~~~-~~~~~~~--------------tpe~la~~W~~~I~~a~~~~~~~h~r~~~~~k~y~~~~~~~~~----------- 54 (663) T protein:vir:34 1 MNES-QPTDFAD--------------TPQGWAQRWQEEMSAAREPLEKWHTQGKEIVKRYRDERDSAHD----------- 54 (663) T ss_pred CCcc-ccccchh--------------cchhHHHHHHHHHHHHHhccchHHHHHHHHHHHhhccccCCCc----------- Confidence 2211 1111111 133333 3332 22233344556666677777765311100 Q ss_pred ccccccccccchHHHHHHHHHHhhhcCCeeec------CCch----hHHHHHHHHH-------hccHHHHHHHHHHHHHh Q lcl|Aclame:pro 91 PLKPDDRMITNFHANLVDQKVSYIVGKPIAFK------HTDD----EVVKRIDEVL-------GNRFDDKLHSVLTGASN 153 (492) Q Consensus 91 ~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~------~~d~----~~~~~l~~~~-------~n~~~~~~~~~~~~~~~ 153 (492) . +.| .|+.---|..+.--+.+.+|..+ ..+. ...+.++... +++++..+....++++. T Consensus 55 -~--~~r--~nl~~sni~~i~P~iYar~P~p~V~~rf~d~d~~~~r~ase~leR~~~~~~~~D~~~l~~~~~~~v~d~ll 129 (663) T protein:vir:34 55 -A--ETR--WNLFSTNIQTQMASLYGQTPKVSVSRRFADADDDVARVASELLERLLNTDIEKDSDTFQQALEYALQDRLL 129 (663) T ss_pred -c--ccc--cchhhhhHHHHhhhhhcCCCcceeeecccCcccchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhc Confidence 0 012 14444444444444555554432 2232 2333333322 13478888888999999 Q ss_pred cCeEEEEEEeC--------------CC-C----------------ceEEEEEcccceEEEecCCCC-CceEEEEE-eeee Q lcl|Aclame:pro 154 KGIEWLHPYLD--------------EE-G----------------EFKLFRVPAEQGIPIWTDKEH-EELEAFIR-MYKL 200 (492) Q Consensus 154 ~G~~~~~v~~d--------------~~-g----------------~~~i~~~~p~~~~~i~d~~~~-~~~~~~i~-~~~~ 200 (492) ||+|-+.|-+- +. + .++|..+.-+.+. +++... .+..+.++ .|-. T Consensus 130 ~~rG~~~v~Ye~~~~~~~~~~~~~D~~~~~~~a~~~~~~e~~a~E~v~id~v~~~dfl--~~pAr~W~ev~wva~r~~mt 207 (663) T protein:vir:34 130 PGFGLCRIRYEVEWEEVAGVDAILDEATGAELAAAVPPTQRKAYECVETDYLHWQDVL--WSPARVWHEVRWLAFRNLLD 207 (663) T ss_pred cccceEEEEeecccchhccccccCCCccccchhcccccchhhcccceeeeeechhhcc--cchhhccccccceeeeccCC Confidence 99887766431 10 0 2333333322221 111100 01111110 0000 Q ss_pred --------------------------------------ccceeEEEEecceEEEEEE-ecceeeecccccccccccccee Q lcl|Aclame:pro 201 --------------------------------------ENETKVEYWDKVTVNYYVY-ENGSLIPDYSNNLENSKTHFST 241 (492) Q Consensus 201 --------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 241 (492) +....+|+|+...-..|.+ ++.....++ ..+.... T Consensus 208 k~e~~~rf~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~VwEIWdK~~~~V~w~~eg~~~~L~~------~~p~lgl 281 (663) T protein:vir:34 208 MREFNARFDADGSRNLWASVPKVGKPKDGKDGQSCHPWDRAEVWEIWDKGGRKVDWYVEGYSAVLDT------QPDPLGL 281 (663) T ss_pred HHHHHHhhcCChhhhhhhhccCcCCccccCCCCCcchhcCcceeEEEecCCcEEEEEEcCcceeccc------CCCCCCC Confidence 0112356777655444333 222222221 1111122 Q ss_pred ccCCccceEeecC----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCcccchh-hHHhhhhccceec Q lcl|Aclame:pro 242 GSWGKIPFIPFKN----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPE-FKRLLRYYGAIKV 316 (492) Q Consensus 242 ~~~g~iPvv~~~n----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~ 316 (492) -+|=-||..-+++ +-...++|--...+.+++|.+. +..|.+...-.+-.+.....++...+ +.... .+..+.+ T Consensus 282 ~~ffPcPrpl~~~~~~ds~ipvpd~~~y~~~~~E~n~~t-~Rin~l~d~ikv~gvy~~~~g~~i~~~l~~a~-~n~lvpV 359 (663) T protein:vir:34 282 ESFFPCPKPLLANWTTDKVVPRPDFVLAQDLYKEIDLVS-TRITLLERAIRVVGVYDKSSGLTIGRLLSEAA-QNDLIPV 359 (663) T ss_pred CCCCCCcccccceecCCCeecCCcHHHHHHHHHHHHHHH-HHHHHHHhhhhhceeeccccchhHHHHHHHhh-CCCceec Confidence 2232355554443 3346788988999999999874 44444444444444432212222222 22222 2222222 Q ss_pred ------CCCCcc----eeeecccCH---HHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 317 ------SDNGGV----DTIQVEVPV---ENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLA 383 (492) Q Consensus 317 ------~~~~d~----~~l~~~~~~---~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~ 383 (492) .+.|+. .++-.+--. .++-..-..++.++++++++.++.=+..--+-++.|-..+-+.+..++..++ T Consensus 360 ~~~~~~~~~gg~~k~I~~~pi~~~~~aI~~l~~~r~qir~d~~qITGiaDi~Rga~~a~ETatAQ~IKsq~gS~RIqe~q 439 (663) T protein:vir:34 360 ENWLTFADKGGLRGVVDWFPLEPVVAALTSLRDYRRELVDALHQVTGMADIMRGASDPRETAMAQGVKAKFGSIRLQRLQ 439 (663) T ss_pred chhhhhhhhcCccchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccCcchhhHHHHHHHHHHhHHHHHHH Confidence 233332 332222122 2333455678889999998887755444345566666677788888999999 Q ss_pred HHHHHHHHHHHHHHHHHhccCC-------------------------------cceeeeEEeCCCCCcCHHHHHHHHHHH Q lcl|Aclame:pro 384 RKAKVAIQELLWFVFEHFDIKG-------------------------------EHKDVDISFNYNKVANTELQVQTAQQS 432 (492) Q Consensus 384 ~~~~~~l~~~~~li~~~~~~~~-------------------------------~~~~i~i~f~~~~p~d~~e~~~~~~k~ 432 (492) .......+.+.++..+++..+. +...++|.=..+.-.|..+.-+..++. T Consensus 440 devqR~arDi~ql~AEIl~~~~~~etl~~m~~~elp~~~ei~~~~~~L~n~~~r~~~ldIe~dsT~~~D~~~eK~~~~E~ 519 (663) T protein:vir:34 440 DEVARFASDIQRLKAEVIAEHYDVASILAQANAEFTFDKELAPKAAELIKSRFSMYRVEVKPEAVSLQDFAALRNEKMEV 519 (663) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCcccchhHHHHHHhcCCCcceeeeeccCCCCcCChHHHHHHHHHH Confidence 9999999999999877653210 112234444444445555444433332 Q ss_pred -hcc--CChHH--HHHhCCCCC------------------CHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCC--- Q lcl|Aclame:pro 433 -MGI--VSHET--VLENHPFVE------------------DLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERS--- 486 (492) Q Consensus 433 -~g~--vs~et--~l~~l~~v~------------------D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~--- 486 (492) .++ +++.. ++.+.|..- +++.-++++..-.++..+.. ..+..+++..++ T Consensus 520 l~~i~~~~qq~~pl~~q~p~~~p~l~Ellk~~~~~f~~~~qie~ai~~~~~~~e~aa~~~-----~~~~pa~~~~~~k~~ 594 (663) T protein:vir:34 520 LSGIASFMQGVAPLAQQVPGSAPFLLQMLKWSVSGLRGSSTIEGVLDKAIAAAEEAQKQA-----AQQSPAPQQPDPKVV 594 (663) T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCChhhhHHHHHHHHHhhhHHHhhcc-----CCCCcccchhhHHHH Confidence 111 11111 112222111 11222222221111111000 001111110000 Q ss_pred -CCCCCC Q lcl|Aclame:pro 487 -NNKESE 492 (492) Q Consensus 487 -~~~~~e 492 (492) +.-..+ T Consensus 595 ~~q~k~q 601 (663) T protein:vir:34 595 AQAMKGQ 601 (663) T ss_pred HHHHHHH Confidence 000000 No 250 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=64.11 E-value=0.31 Score=23.41 Aligned_cols=427 Identities=15% Similarity=0.132 Sum_probs=167.8 Q ss_pred ChhhhHHHHHHHHHhcCCceecc----------CCCcHHHHHHHHhhcCC----Chhh-HHHHHH---HHHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYP----------SQPTQTEIFDAIVRTNN----KPET-LEEMIV---RYIKQHLEKLPE 62 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~-~~~~l~---~~i~~~~~~~~~ 62 (492) |.|.-| ...|-|.+.-...|. ..|...+-...+..... .... ...+.. .-++...+-+.+ T Consensus 1 m~~~~L--~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~ 78 (524) T protein:vir:72 1 MKFNVL--SLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDT 78 (524) T ss_pred CCCchh--hHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHH Confidence 777311 123444433222221 00100000000000000 0000 000000 000111122234 Q ss_pred HHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHH--------HHH Q lcl|Aclame:pro 63 ISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVK--------RID 133 (492) Q Consensus 63 ~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~--------~l~ 133 (492) |+.+..+++-+.. ...||+. .+.--..+|+.+..++.+..+ ..+ T Consensus 79 YR~ma~~pEvd~A---------------------------v~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~ 131 (524) T protein:vir:72 79 YRNLMNNYEVDNA---------------------------VSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFS 131 (524) T ss_pred HHHHhhccchhhH---------------------------HHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHH Confidence 4444333333221 1112221 111123456666544433222 222 Q ss_pred HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC----CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEE Q lcl|Aclame:pro 134 EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE----EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEY 208 (492) Q Consensus 134 ~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~----~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~ 208 (492) .+.. =+|+....+..|.+.+.|+-|++...|. +|-..+..++|+.+-.|.. ...+....+++ T Consensus 132 ~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~-------------i~~~~~~~~~v 198 (524) T protein:vir:72 132 DVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVRE-------------IITETEAGTKI 198 (524) T ss_pred HHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeeeCCccceeeee-------------eccCCCccchh Confidence 2221 2778888999999999999999998864 3667789999988865432 11111111111 Q ss_pred EecceEEEEEEecceeeeccccccccccccceeccCCccce--EeecCcc----CCCCcHHHHHHHHHHHHHH--HHHHH Q lcl|Aclame:pro 209 WDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFKNND----LEISDIFMYKTLIDAYNRR--LSDLS 280 (492) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~nn~----~~~s~~~~v~~liD~~~~~--~s~~~ 280 (492) .. ....+|.+..+.......+.. . .++.-=+||- |.|.+.- .+.-.+.-+...+..+|++ +-|.+ T Consensus 199 i~-~~~e~f~Y~~~~~~y~~~g~~--~----~~~~~ikI~~dAI~y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAl 271 (524) T protein:vir:72 199 VK-GYKEYFIYDTAHESYACDGRM--Y----EAGTKIKIPKAAVVYAHSGLVDCCGKNIIGYLHRAVKPANQLKLLEDAV 271 (524) T ss_pred hc-chhhheeeccCccccccCccc--c----CCCcceecchhheeeeeccceeCCCCceeccchhhhHhHHhhhHHHhhH Confidence 11 111223322221111111000 0 0000001221 2222211 1111122223333344432 23444 Q ss_pred HHHHhcCCceEEEecCCcccchhhH-----Hh----hhhccce--------------e------c--CCCCc-ceeeecc Q lcl|Aclame:pro 281 NTFKDSNELTYVLKNYDDQELPEFK-----RL----LRYYGAI--------------K------V--SDNGG-VDTIQVE 328 (492) Q Consensus 281 ~~~~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~~--------------~------~--~~~~d-~~~l~~~ 328 (492) -.-+....|-.=+.-.+..+.++.+ +. .++..+. . + -+||. .+.-|.+ T Consensus 272 VIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLp 351 (524) T protein:vir:72 272 VIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLP 351 (524) T ss_pred HHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeecc Confidence 4444444443322211211222111 11 0100000 0 0 11222 2222333 Q ss_pred cC-HHHHHHHHHHHHHHHHHHhCCCCC--Ccccccc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 329 VP-VENSKKYLDELYQKIMLFGQAVDF--SSDKFGS-A-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI 403 (492) Q Consensus 329 ~~-~~~~~~~i~~l~~~i~~~a~~p~~--~~~~~~~-~-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 403 (492) .. --+...-+.-+++.++..-++|-- ..++.++ + .-|..|-.-+.....-+.+.+..|..-+.++++.=+-+-|+ T Consensus 352 Ggqnlgem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgi 431 (524) T protein:vir:72 352 GADNTGNMEDIRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGI 431 (524) T ss_pred ccCCcChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC Confidence 21 223444567777888887777742 2222111 1 12234444444455666777778888888877765544443 Q ss_pred C--Ccc----eeeeEEeCCCCCcCHHHHHH-------HHHHHh---c-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHHH Q lcl|Aclame:pro 404 K--GEH----KDVDISFNYNKVANTELQVQ-------TAQQSM---G-IVSHETVLENH-PFVE-DLQAELERIEQEQTE 464 (492) Q Consensus 404 ~--~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~~---g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~~ 464 (492) - .+| ..|.+.|...-.-.+...++ ++..+. | .+|.+++.+.+ ..++ +..++.++|++|..+ T Consensus 432 it~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~ 511 (524) T protein:vir:72 432 ITEDEWNDEINNIKIEFHRDSYFAELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKE 511 (524) T ss_pred CCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhc Confidence 2 233 45778886655544444433 333332 4 47999999864 3332 245566666666532 Q ss_pred HHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 465 YNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .. ..++. ++++| T Consensus 512 ~~---------~~~~~-------~~~~~ 523 (524) T protein:vir:72 512 AR---------FQDPD-------QEQED 523 (524) T ss_pred CC---------CCCCc-------hhhhc Confidence 11 11111 11111 No 251 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=63.61 E-value=0.31 Score=23.34 Aligned_cols=427 Identities=15% Similarity=0.134 Sum_probs=167.8 Q ss_pred ChhhhHHHHHHHHHhcCCceecc----------CCCcHHHHHHHHhhcCC----Chhh-HHHHHH---HHHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYP----------SQPTQTEIFDAIVRTNN----KPET-LEEMIV---RYIKQHLEKLPE 62 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~-~~~~l~---~~i~~~~~~~~~ 62 (492) |.|.-| ...|-|.+.-...|. ..|...+-...+..... .... ...+.. .-++...+-+.+ T Consensus 1 m~~~~L--~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~ 78 (524) T protein:vir:10 1 MKFNVL--SLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDT 78 (524) T ss_pred CCCchh--hHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHH Confidence 777311 123444433222221 00100000000000000 0000 000000 000111122234 Q ss_pred HHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHH--------HHH Q lcl|Aclame:pro 63 ISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVK--------RID 133 (492) Q Consensus 63 ~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~--------~l~ 133 (492) |+.+..+++-+.. ...||+. .+.--..+|+.+..++.+..+ ..+ T Consensus 79 YR~ma~~pEvd~A---------------------------v~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~ 131 (524) T protein:vir:10 79 YRNLMNNYEVDNA---------------------------VSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFN 131 (524) T ss_pred HHHHhhccchhhH---------------------------HHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHH Confidence 4443333333221 1112221 111123456666544433222 222 Q ss_pred HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC----CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEE Q lcl|Aclame:pro 134 EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE----EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEY 208 (492) Q Consensus 134 ~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~----~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~ 208 (492) .+.. =+|+....+..|.+.+.|+-|++...|. +|-..+..++|+.+-.|.. ...+....+++ T Consensus 132 ~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~-------------i~~~~~~~~~v 198 (524) T protein:vir:10 132 DVLNHLSFQRKGSDHFRRWYVDSRIFFHKIIDPKRPKEGIKELRRLDPRQVQYVRE-------------IITETEAGTKI 198 (524) T ss_pred HHHHHhccchhhhHHHhhheeeeEEEEEEEeeCCCccccceeeeeeCCccceeeee-------------eccCCCccchh Confidence 2221 2778888999999999999999998874 3667889999988865432 11111111111 Q ss_pred EecceEEEEEEecceeeeccccccccccccceeccCCccce--EeecCcc----CCCCcHHHHHHHHHHHHHH--HHHHH Q lcl|Aclame:pro 209 WDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFKNND----LEISDIFMYKTLIDAYNRR--LSDLS 280 (492) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~nn~----~~~s~~~~v~~liD~~~~~--~s~~~ 280 (492) .. ....+|.+..+.......+.. . .++.-=+||- |.|.+.- .+.-.+.-+...+..+|++ +-|.+ T Consensus 199 i~-~~~e~f~Y~~~~~~y~~~g~~--~----~~~~~ikI~~dAI~y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAl 271 (524) T protein:vir:10 199 VK-GYKEYFIYDTAHESYACDGRM--Y----EAGTKIKIPKAAIVYAHSGLVDCCGKNIIGYLHRAVKPANQLKLLEDAV 271 (524) T ss_pred hc-chhhheeeccCccccccCccc--c----CCCcceecchhheeeeeccceeCCCCceeccchhhhHHHHhhhHHHhhH Confidence 11 111223322221111111000 0 0000001221 2222211 1111122233333444432 23444 Q ss_pred HHHHhcCCceEEEecCCcccchhhH-----Hh----hhhccce--------------e------c--CCCCc-ceeeecc Q lcl|Aclame:pro 281 NTFKDSNELTYVLKNYDDQELPEFK-----RL----LRYYGAI--------------K------V--SDNGG-VDTIQVE 328 (492) Q Consensus 281 ~~~~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~~--------------~------~--~~~~d-~~~l~~~ 328 (492) -.-+....|-.=+.-.+..+.++.+ +. .++..+. . + -+||. .+.-|.+ T Consensus 272 VIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLp 351 (524) T protein:vir:10 272 VIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLP 351 (524) T ss_pred HHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCcccceeecc Confidence 4444444443322211211222111 11 0100000 0 0 11222 2222333 Q ss_pred cC-HHHHHHHHHHHHHHHHHHhCCCCC--Ccccccc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc Q lcl|Aclame:pro 329 VP-VENSKKYLDELYQKIMLFGQAVDF--SSDKFGS-A-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI 403 (492) Q Consensus 329 ~~-~~~~~~~i~~l~~~i~~~a~~p~~--~~~~~~~-~-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~ 403 (492) .. --+...-+.-+++.++..-++|-- ..++.++ + .-|..|-.-+.....-+.+.+..|..-+.++++.=+-+-|+ T Consensus 352 Ggqnlgem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgi 431 (524) T protein:vir:10 352 GADNTGNMEDVRWFRQALYMALRVPLSRIPQDQQGGVMFDSGTSITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGI 431 (524) T ss_pred ccCCcChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC Confidence 21 223444567777888887777742 2222111 1 12234444444455666777778888888877765544443 Q ss_pred C--Ccc----eeeeEEeCCCCCcCHHHHHH-------HHHHHh---c-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHHH Q lcl|Aclame:pro 404 K--GEH----KDVDISFNYNKVANTELQVQ-------TAQQSM---G-IVSHETVLENH-PFVE-DLQAELERIEQEQTE 464 (492) Q Consensus 404 ~--~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~~---g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~~ 464 (492) - .+| ..|.+.|...-.-.+...++ ++..+. | .+|.+++.+.+ ..++ +..++.++|++|..+ T Consensus 432 it~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~ 511 (524) T protein:vir:10 432 ITEDEWNDEINNIKIEFHRDSYFTELKEAEILERRINMLTMAEPFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKE 511 (524) T ss_pred CCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhc Confidence 2 233 45778886655544444433 333332 4 47999999864 3332 245556666666532 Q ss_pred HHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 465 YNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .. ..++. +++.| T Consensus 512 ~~---------~~~~~-------~~~~~ 523 (524) T protein:vir:10 512 AR---------FQDPD-------QEQED 523 (524) T ss_pred CC---------CCCCc-------hhhhc Confidence 11 11111 11111 No 252 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=61.43 E-value=0.35 Score=23.06 Aligned_cols=356 Identities=12% Similarity=-0.026 Sum_probs=121.5 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~ 122 (492) +.+-.++. .+... .....+.|. ... ..-...-+.......+|+.+++-+..-|+.+- T Consensus 1 MGlf~~~~---~~~~~------~~~~~~~~~-------------~~~-~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~ 57 (395) T protein:vir:98 1 MGILDFFS---FKKSG------TLSDDDSGS-------------TTS-EKLTNVVLKEDALYKCVNYLARIISKSTFRLK 57 (395) T ss_pred Ccchhhhc---CCCcc------cccccccch-------------hhh-hhcchhhhhhHHHHHHHHHHHHHHhhCceeEE Confidence 22211110 00000 000000000 000 00000001123344466777776666676653 Q ss_pred CCc-hh-HH-HHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEE Q lcl|Aclame:pro 123 HTD-DE-VV-KRIDEVLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAF 194 (492) Q Consensus 123 ~~d-~~-~~-~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~ 194 (492) ..+ +. .. .....+.. |. ...+...+...++.+|.||+++-.+..+. + |......+. ... T Consensus 58 ~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~-----~-~~~~~~~~~--~~~----- 124 (395) T protein:vir:98 58 TPEKLTENQKDWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIY-----V-ADSFTQDKK--ISG----- 124 (395) T ss_pred ecCCcccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCcee-----c-CCccccccc--ccC----- Confidence 221 11 11 12222221 32 34566667888999999998876654211 1 111100000 000 Q ss_pred EEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCcc-----CCCCcHHHHHHHH Q lcl|Aclame:pro 195 IRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND-----LEISDIFMYKTLI 269 (492) Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~-----~~~s~~~~v~~li 269 (492) ..++.. . +..|... ...... -|++|+... .+.|.+.....++ T Consensus 125 ~~~~~~------~------~~~~~~~-------------------~~~~~~--evih~k~~~~~~~~~~~~~~~~~~~~~ 171 (395) T protein:vir:98 125 SQFKVS------R------VQGQTYE-------------------KTFTFD--QVIYLKNDNSDLMSKVESLWEEYGELL 171 (395) T ss_pred ccccee------e------ecCceee-------------------eEecCc--cEEEecCCCCCccccccchhhhHHHHH Confidence 000000 0 0000000 000001 134443211 1222223222222 Q ss_pred H-HHHHHH-HHHHHHHHhcCCceEEEecCC---cccch----hhHHh----hhhc--cceecCCCCcceeeecc------ Q lcl|Aclame:pro 270 D-AYNRRL-SDLSNTFKDSNELTYVLKNYD---DQELP----EFKRL----LRYY--GAIKVSDNGGVDTIQVE------ 328 (492) Q Consensus 270 D-~~~~~~-s~~~~~~~~~~~~~l~~~g~~---~~~~~----~~~~~----~~~~--~~~~~~~~~d~~~l~~~------ 328 (492) . .++... ......+..+..+...+.+.. .+... ++... .... .++.++.|.+.+.++.. T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~ 251 (395) T protein:vir:98 172 GHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTVEKIRTESVVGIPVTANTNYEEYGSKNTGAVK 251 (395) T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHHhhhhcCCcceeecCCCceeEecccccccccC Confidence 1 111111 111112222333333332221 11111 11111 1111 23334444444434311 Q ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcce Q lcl|Aclame:pro 329 VPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHK 408 (492) Q Consensus 329 ~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 408 (492) .....+....+..+..|+..=++|..-.....++.+...+.+....+.-.+...+..+... + +....-.. T Consensus 252 ~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~k-------l---l~~~~~~~ 321 (395) T protein:vir:98 252 SYVDDIKKLKDQYMAEFAEMLGIPISLLHGDIADNQKNYELLLEGPIESLITNIVDGLEYA-------I---FDKSETLQ 321 (395) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh-------c---CChhhhcC Confidence 1122344444555566666666765544221122222222222222222222211111111 1 11111122 Q ss_pred eeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCC Q lcl|Aclame:pro 409 DVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQE 484 (492) Q Consensus 409 ~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 484 (492) .+.+.|..-+..|..+.++++.++ .|+++.-.+++.++. +++. ..++.- ......+.. ++. T Consensus 322 g~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~--~gD~~~-----~~~n~~~~~--------~~g 386 (395) T protein:vir:98 322 GSFIKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIGLPELPDG--LGKVLY-----MTKNYESVL--------ERG 386 (395) T ss_pred cceeeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC--CCceee-----ecccceecc--------ccc Confidence 245677788888999999999887 478999888887753 2221 000000 000000111 111 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 485 RSNNKESE 492 (492) Q Consensus 485 ~~~~~~~e 492 (492) +++++++| T Consensus 387 ge~~~~~~ 394 (395) T protein:vir:98 387 GEVDEEVE 394 (395) T ss_pred CCCCCCCC Confidence 11222222 No 253 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=61.14 E-value=0.36 Score=23.02 Aligned_cols=235 Identities=12% Similarity=-0.002 Sum_probs=96.9 Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 121 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~-~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 121 (492) +.+ +.+...+... ........-....+.. +..... .-+..-+..+-....|+.+++-+..-|+.+ T Consensus 1 Mgl---F~~~~~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~-v~~~~al~~~~v~~~i~~ia~~iA~lp~~~ 66 (251) T protein:vir:46 1 MGI---FYKNEKRDLQYNEDDLQMMVQTLPSFQ----------GTKLRQ-YKDIEAIRHSDIFTAVMMIASDLARMPIRV 66 (251) T ss_pred CCc---cccccccccCCCccchhhhhhhhcccc----------CcCcce-echhhhhccHHHHHHHHHHHHhHhhCceEE Confidence 111 1000000000 0000000000000000 000000 000001122334456777777777777766 Q ss_pred cCCchh--HHHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEE Q lcl|Aclame:pro 122 KHTDDE--VVKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEA 193 (492) Q Consensus 122 ~~~d~~--~~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~ 193 (492) ....+. ....+..+.. | ....+...+..+.+.+|.||+.+.++..|++ .+..++|..+.+..++. +.+.+ T Consensus 67 ~~~~~~~~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~--g~~~~ 144 (251) T protein:vir:46 67 TVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDAR--GRLYY 144 (251) T ss_pred eeCccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCC--CcEEE Confidence 432211 1123333332 2 2346677788899999999999999998876 58889999998877642 33322 Q ss_pred EEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeec----CccCCCCcHHHHHHHH Q lcl|Aclame:pro 194 FIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK----NNDLEISDIFMYKTLI 269 (492) Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~~~s~~~~v~~li 269 (492) .+.............+.... |++++ +...|.|.++.....+ T Consensus 145 ~~~~~~~~~~g~~~~~~~~d-----------------------------------iiH~r~~~~dg~~G~spi~~~~~~i 189 (251) T protein:vir:46 145 FHQRIDSNGNNIERNVKFED-----------------------------------MLDIKFYSLDGINGLSLLDTLSRTI 189 (251) T ss_pred EEEEeccCCcceeEEECCcc-----------------------------------EEEecCcCCCCeeecCHHHHHHHHH Confidence 11111111111111111111 12221 1235778787777766 Q ss_pred HHHHHHHHHHHHHHHhcCCceEEEecCCcccchhhHHhhhh-ccceec--CCCCcceeeecccCH Q lcl|Aclame:pro 270 DAYNRRLSDLSNTFKDSNELTYVLKNYDDQELPEFKRLLRY-YGAIKV--SDNGGVDTIQVEVPV 331 (492) Q Consensus 270 D~~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~~~~~--~~~~d~~~l~~~~~~ 331 (492) .....+..-..+.+...+.|-.+++-......++....++. +..... +..|.+.. -.+. T Consensus 190 ~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~~~~~~~~~~~~~g~~n~g~~~~---gm~~ 251 (251) T protein:vir:46 190 ESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFPKVLVELNKLGKLSY---SMNQ 251 (251) T ss_pred HHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHhcCccccccccc---ccCC Confidence 65555555555666666666655543221111121111111 111111 11121111 0011 No 254 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=58.73 E-value=0.41 Score=22.73 Aligned_cols=415 Identities=14% Similarity=0.087 Sum_probs=165.2 Q ss_pred ChhhhHHHHHHHHHhc------CCceeccCCCcHHH----------------HHHHHhhcCCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVAQALIK------GGNILYPSQPTQTE----------------IFDAIVRTNNKPETLEEMIVRYIKQHLE 58 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 58 (492) |.+.+|..--+++=.+ +.+..=..+|+..+ .+...+......... .. T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~----~e------- 69 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGT----KD------- 69 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchH----HH------- Confidence 6666665432221110 01111111111111 110001111111111 11 Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHH------- Q lcl|Aclame:pro 59 KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVK------- 130 (492) Q Consensus 59 ~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~------- 130 (492) -+.+|+.+..+++-+..+ ..||+. .+.--..+|+.+..++.+..+ T Consensus 70 LI~~YR~ma~~pEvd~Av---------------------------~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~ 122 (516) T protein:vir:10 70 LINTYRQLINNPEVERAV---------------------------ANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKIL 122 (516) T ss_pred HHHHHHHHhhccchhhHH---------------------------HHhhcceeEecCCCceEEEEecccCcchHHHHHHH Confidence 123444444443333211 112221 111123455555544333222 Q ss_pred -HHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeC--CCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeE Q lcl|Aclame:pro 131 -RIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLD--EEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKV 206 (492) Q Consensus 131 -~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d--~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~ 206 (492) ..+.+.. =+|+....+..|.+.+.|+.|++...| ++|-..+..++|+.+..+.- -..++...+ T Consensus 123 eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~-------------i~~~~~~~~ 189 (516) T protein:vir:10 123 EEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHKIMPNPKKGIAELRRLDPRFMEYYRE-------------IVTSDIGGT 189 (516) T ss_pred HHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCccccceeeeeeCCcceeeEee-------------ecccccccc Confidence 2222221 277888899999999999999986555 35667889999999877543 111112111 Q ss_pred EEEecceEEEEEEecceeeeccccccccccccceeccCCccce--EeecCc-------cCCCCcHHHHHHHHHHHHHH-- Q lcl|Aclame:pro 207 EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFKNN-------DLEISDIFMYKTLIDAYNRR-- 275 (492) Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~nn-------~~~~s~~~~v~~liD~~~~~-- 275 (492) ++.... ..+|.+..+.......+ +.. .++.-=+||- |.|.+. ..-.|-++ ..+..+|++ T Consensus 190 ~v~~~~-~e~~~Y~~~~~~~~~~g--~~~----~~~~~ikI~~dAI~y~hSGL~d~~~~~i~syLh---kAiKp~NQLkm 259 (516) T protein:vir:10 190 TIVKGY-REFFIYTTGNEGYSYNG--RIF----EPNTRIKIPRSAVVYASSGLMDCSDRGIIGYLH---NAVKPANQLKL 259 (516) T ss_pred hhhhhh-hheeeeccCcccccccc--cee----CCCcceeechhheeeecccceeCCCCceeeeeh---hhhHhHHhhHH Confidence 111110 01111111111000000 000 0000001111 222211 11123333 333333332 Q ss_pred HHHHHHHHHhcCCceEEEecCCcccchhhH-----Hh----hhhccce--------------e------c--CCCCc-ce Q lcl|Aclame:pro 276 LSDLSNTFKDSNELTYVLKNYDDQELPEFK-----RL----LRYYGAI--------------K------V--SDNGG-VD 323 (492) Q Consensus 276 ~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~~--------------~------~--~~~~d-~~ 323 (492) +-|.+-.-+....|-.=+.-.+..+.++.+ +. .++..+. . + -+||. .+ T Consensus 260 ~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTE 339 (516) T protein:vir:10 260 LEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTE 339 (516) T ss_pred HHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccc Confidence 233343444444443322211111111111 11 0100000 0 0 11222 22 Q ss_pred eeecccCH-HHHHHHHHHHHHHHHHHhCCCCC--Cccc-cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 TIQVEVPV-ENSKKYLDELYQKIMLFGQAVDF--SSDK-FG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVF 398 (492) Q Consensus 324 ~l~~~~~~-~~~~~~i~~l~~~i~~~a~~p~~--~~~~-~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 398 (492) .-|.+... -+...-+.-+++.++..-++|-- ..++ +. +..-|..|-.-+.....-+.+.+..|..-+.++++.=+ T Consensus 340 ItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qL 419 (516) T protein:vir:10 340 VSSLPGAQTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLDPLKTNL 419 (516) T ss_pred eeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 22333221 23445577788888887778743 2222 11 01122233333334455566777788888877776654 Q ss_pred HHhccC--Ccc----eeeeEEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHH Q lcl|Aclame:pro 399 EHFDIK--GEH----KDVDISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIE 459 (492) Q Consensus 399 ~~~~~~--~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~ 459 (492) -+-|+- .+| ..|.+.|...-.-.+...++ ++..+ +| .+|.+++.+.+ ...+ +..+|.++|+ T Consensus 420 ilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~e~k~I~ 499 (516) T protein:vir:10 420 IYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIAQEEKQIE 499 (516) T ss_pred hhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHHHHHHHHH Confidence 444432 233 45778886555444444333 33333 34 69999999864 3332 3455666666 Q ss_pred HHHHHHHHhhccccCCCCCCCCcCCC Q lcl|Aclame:pro 460 QEQTEYNKQLPNLDDGGADSAQQQER 485 (492) Q Consensus 460 ~E~~~~~~~~~~~~~~~~~~~~~~~~ 485 (492) +|..+..-. +++++++= T Consensus 500 ~E~~~~~~~---------~p~~~~~f 516 (516) T protein:vir:10 500 QEAGIKRFQ---------NPENEDDF 516 (516) T ss_pred HhhhCCCCC---------CCCccccC Confidence 665422100 11110000 No 255 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=58.73 E-value=0.41 Score=22.73 Aligned_cols=415 Identities=14% Similarity=0.087 Sum_probs=165.2 Q ss_pred ChhhhHHHHHHHHHhc------CCceeccCCCcHHH----------------HHHHHhhcCCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVAQALIK------GGNILYPSQPTQTE----------------IFDAIVRTNNKPETLEEMIVRYIKQHLE 58 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 58 (492) |.+.+|..--+++=.+ +.+..=..+|+..+ .+...+......... .. T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~----~e------- 69 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGT----KD------- 69 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchH----HH------- Confidence 6666665432221110 01111111111111 110001111111111 11 Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHH------- Q lcl|Aclame:pro 59 KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVK------- 130 (492) Q Consensus 59 ~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~------- 130 (492) -+.+|+.+..+++-+..+ ..||+. .+.--..+|+.+..++.+..+ T Consensus 70 LI~~YR~ma~~pEvd~Av---------------------------~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~ 122 (516) T protein:vir:10 70 LINTYRQLINNPEVERAV---------------------------ANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKIL 122 (516) T ss_pred HHHHHHHHhhccchhhHH---------------------------HHhhcceeEecCCCceEEEEecccCcchHHHHHHH Confidence 123444444443333211 112221 111123455555544333222 Q ss_pred -HHHHHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeC--CCCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeE Q lcl|Aclame:pro 131 -RIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLD--EEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKV 206 (492) Q Consensus 131 -~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d--~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~ 206 (492) ..+.+.. =+|+....+..|.+.+.|+.|++...| ++|-..+..++|+.+..+.- -..++...+ T Consensus 123 eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~-------------i~~~~~~~~ 189 (516) T protein:vir:10 123 EEFDEVCRLLDASRKLDTLFRRWYVDSRIFFHKIMPNPKKGIAELRRLDPRFMEYYRE-------------IVTSDIGGT 189 (516) T ss_pred HHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEecCccccceeeeeeCCcceeeEee-------------ecccccccc Confidence 2222221 277888899999999999999986555 35667889999999877543 111112111 Q ss_pred EEEecceEEEEEEecceeeeccccccccccccceeccCCccce--EeecCc-------cCCCCcHHHHHHHHHHHHHH-- Q lcl|Aclame:pro 207 EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFKNN-------DLEISDIFMYKTLIDAYNRR-- 275 (492) Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~nn-------~~~~s~~~~v~~liD~~~~~-- 275 (492) ++.... ..+|.+..+.......+ +.. .++.-=+||- |.|.+. ..-.|-++ ..+..+|++ T Consensus 190 ~v~~~~-~e~~~Y~~~~~~~~~~g--~~~----~~~~~ikI~~dAI~y~hSGL~d~~~~~i~syLh---kAiKp~NQLkm 259 (516) T protein:vir:10 190 TIVKGY-REFFIYTTGNEGYSYNG--RIF----EPNTRIKIPRSAVVYASSGLMDCSDRGIIGYLH---NAVKPANQLKL 259 (516) T ss_pred hhhhhh-hheeeeccCcccccccc--cee----CCCcceeechhheeeecccceeCCCCceeeeeh---hhhHhHHhhHH Confidence 111110 01111111111000000 000 0000001111 222211 11123333 333333332 Q ss_pred HHHHHHHHHhcCCceEEEecCCcccchhhH-----Hh----hhhccce--------------e------c--CCCCc-ce Q lcl|Aclame:pro 276 LSDLSNTFKDSNELTYVLKNYDDQELPEFK-----RL----LRYYGAI--------------K------V--SDNGG-VD 323 (492) Q Consensus 276 ~s~~~~~~~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~~--------------~------~--~~~~d-~~ 323 (492) +-|.+-.-+....|-.=+.-.+..+.++.+ +. .++..+. . + -+||. .+ T Consensus 260 ~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTE 339 (516) T protein:vir:10 260 LEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNLSMTEDYWLMRRDGKSVTE 339 (516) T ss_pred HHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhhhhHhhhcccccCCCCccc Confidence 233343444444443322211111111111 11 0100000 0 0 11222 22 Q ss_pred eeecccCH-HHHHHHHHHHHHHHHHHhCCCCC--Cccc-cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 TIQVEVPV-ENSKKYLDELYQKIMLFGQAVDF--SSDK-FG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVF 398 (492) Q Consensus 324 ~l~~~~~~-~~~~~~i~~l~~~i~~~a~~p~~--~~~~-~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~ 398 (492) .-|.+... -+...-+.-+++.++..-++|-- ..++ +. +..-|..|-.-+.....-+.+.+..|..-+.++++.=+ T Consensus 340 ItTLpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qL 419 (516) T protein:vir:10 340 VSSLPGAQTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRKFVVQLQHDFEEIFLDPLKTNL 419 (516) T ss_pred eeeccccCCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 22333221 23445577788888887778743 2222 11 01122233333334455566777788888877776654 Q ss_pred HHhccC--Ccc----eeeeEEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHH Q lcl|Aclame:pro 399 EHFDIK--GEH----KDVDISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIE 459 (492) Q Consensus 399 ~~~~~~--~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~ 459 (492) -+-|+- .+| ..|.+.|...-.-.+...++ ++..+ +| .+|.+++.+.+ ...+ +..+|.++|+ T Consensus 420 ilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~e~k~I~ 499 (516) T protein:vir:10 420 IYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDYVMKNILQMTEEQIAQEEKQIE 499 (516) T ss_pred hhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhcCCHhhHHHHHHHHH Confidence 444432 233 45778886555444444333 33333 34 69999999864 3332 3455666666 Q ss_pred HHHHHHHHhhccccCCCCCCCCcCCC Q lcl|Aclame:pro 460 QEQTEYNKQLPNLDDGGADSAQQQER 485 (492) Q Consensus 460 ~E~~~~~~~~~~~~~~~~~~~~~~~~ 485 (492) +|..+..-. +++++++= T Consensus 500 ~E~~~~~~~---------~p~~~~~f 516 (516) T protein:vir:10 500 QEAGIKRFQ---------NPENEDDF 516 (516) T ss_pred HhhhCCCCC---------CCCccccC Confidence 665422100 11110000 No 256 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=58.60 E-value=0.41 Score=22.71 Aligned_cols=358 Identities=10% Similarity=-0.005 Sum_probs=127.5 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~ 122 (492) +.+..++..+............- ..+..+. . .. ...-+...-...+|+..++-+..-|+.+- T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~---------~~-~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~ 62 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNLTDT-VWCSIPS-------E---------KL-KELSIKKWAIDSCANKIANTLSCAEVLTY 62 (395) T ss_pred CchHHHHHhhhcccccccccccc-hhhcccc-------c---------cc-hhhhhhhHHHHHHHHHHHHHHhhCceeec Confidence 44444444433221111000000 0000000 0 00 00001122234456666666666676664 Q ss_pred CCchhHHHHHHH-HHh--cc---HHHHHHHHHHHHHhcCeEEEEEEeCCCCceEEEEEcccceEEEecCCCCCceEEEEE Q lcl|Aclame:pro 123 HTDDEVVKRIDE-VLG--NR---FDDKLHSVLTGASNKGIEWLHPYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIR 196 (492) Q Consensus 123 ~~d~~~~~~l~~-~~~--n~---~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~ 196 (492) -.++....-+.. +.. |. ...+...+...++.+|.||+++..+.- . .|....... ....-.+ T Consensus 63 ~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~---~----~~~~~~~~~------~~~~~~~ 129 (395) T protein:vir:40 63 EKGEEVRKKNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYI---Y----VADSFTKND------KSLYENT 129 (395) T ss_pred cCCccccchHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCce---e----ecCCccccc------cccccce Confidence 333322222222 221 32 245566678889999999987754321 0 011100000 0000000 Q ss_pred eeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-ccCCCCcHHHHHHHHHHHHHH Q lcl|Aclame:pro 197 MYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-NDLEISDIFMYKTLIDAYNRR 275 (492) Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-n~~~~s~~~~v~~liD~~~~~ 275 (492) ++.. .+..+... ...+-. =|++|+. +..+.+... ++...+... T Consensus 130 ~~~v------------~~~~~~~~-------------------~~~~~~--evih~r~~~~~~~~~~~---~l~~~~~~~ 173 (395) T protein:vir:40 130 YTEV------------TLKDLTLK-------------------KEFKES--EVLHLTLNNESIKSIID---GFYLLYGDL 173 (395) T ss_pred eeee------------eecCceee-------------------eeeccc--cEEEeecCCCCccccch---hHHHHHHHH Confidence 0000 00000000 000000 1233322 222222222 222233333 Q ss_pred HHHHHHHHHh--cCCceEEEecCC---cccchhhHHhh---------hhccceecCCCCcceeeecccCHHHHHH---HH Q lcl|Aclame:pro 276 LSDLSNTFKD--SNELTYVLKNYD---DQELPEFKRLL---------RYYGAIKVSDNGGVDTIQVEVPVENSKK---YL 338 (492) Q Consensus 276 ~s~~~~~~~~--~~~~~l~~~g~~---~~~~~~~~~~~---------~~~~~~~~~~~~d~~~l~~~~~~~~~~~---~i 338 (492) .+...+...+ ...+.+++.... .+...+.+..+ ..+.++.++++.+++.+........+.+ +. T Consensus 174 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 253 (395) T protein:vir:40 174 LTAAVNKYKKLNSRKIIVKLKAMFGQTPEAEEKLRLMLSERMKKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMI 253 (395) T ss_pred HHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHHHHhhccCCceeecCCCceEEeccCChhhhhHHHHHHHH Confidence 3333333322 233445443221 11111211111 1223444555555554443332222222 22 Q ss_pred HHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CC--cceeee Q lcl|Aclame:pro 339 DELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-----KG--EHKDVD 411 (492) Q Consensus 339 ~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~-----~~--~~~~i~ 411 (492) +.+...|+..=++|..-.....++.+...+ ..+..+|.-.++.+...+.. .. ....++ T Consensus 254 ~~~~~~Ia~~fgVPp~~l~~~~sn~e~~~~---------------~f~~~~L~P~~~~ie~~l~~kLl~~~~~~~g~~i~ 318 (395) T protein:vir:40 254 DDVFEMVANSFNIPLGLAKGDTVGLSEQVN---------------SFLMFSINPIAEMFTDEGNRKFYGRDSVLERTYMK 318 (395) T ss_pred HHHHHHHHHHhCCCHHHhcCCCcCHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhcCChhhhcCCceEE Confidence 333445666556665433211122222222 22333343344333332221 11 123455 Q ss_pred EEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhcccc--CCCCCCCCcCCC Q lcl|Aclame:pro 412 ISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLD--DGGADSAQQQER 485 (492) Q Consensus 412 i~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~--~~~~~~~~~~~~ 485 (492) +.+..-+-.|..+.++++.++. |+++.-.++++++. ++++.. ++.- ......... .....+++.++. T Consensus 319 fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~g--D~~~-----~~~n~~~~~~~~~~~kgge~~~~ 391 (395) T protein:vir:40 319 LDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPET--QERF-----VTKNYAPLGENEEDLKGGDINEN 391 (395) T ss_pred EechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCC--ceee-----eccccccccccccccCCCCCCCC Confidence 6666777789999999988874 78999888887754 222110 0000 000000000 000011111111 Q ss_pred CCCC Q lcl|Aclame:pro 486 SNNK 489 (492) Q Consensus 486 ~~~~ 489 (492) .++. T Consensus 392 ~~~~ 395 (395) T protein:vir:40 392 KGDS 395 (395) T ss_pred cCCC Confidence 1111 No 257 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=58.40 E-value=0.41 Score=22.69 Aligned_cols=356 Identities=9% Similarity=0.010 Sum_probs=146.0 Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccc--cccc------------c---- Q lcl|Aclame:pro 29 TEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDA--TGAV------------D---- 90 (492) Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~--~~~~------------~---- 90 (492) |-+..+++-...-|.. +.-.=..+|..|+.++......... .... . T Consensus 1 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 64 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDL----------------PNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWAT 64 (409) T ss_pred CchhhhhcccccCCCc----------------ccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccc Confidence 3333333321111000 0001123444444433221111000 0000 0 Q ss_pred -cccc-ccc--cccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHh--cc---HHHHHHHHHHHHHhcCeEEEE- Q lcl|Aclame:pro 91 -PLKP-DDR--MITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLG--NR---FDDKLHSVLTGASNKGIEWLH- 160 (492) Q Consensus 91 -~~~~-~~r--i~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~--n~---~~~~~~~~~~~~~~~G~~~~~- 160 (492) ...+ ..+ +..+.....|+.+++-+-+-|+.+--...........+.. |. ...+...+....+. |.+|+. T Consensus 65 ~~~~~~t~~~~~~~~~v~acV~~Ia~~iA~lpl~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~ 143 (409) T protein:vir:83 65 PSWGSAQDKLRTLIDVAWACIDLNASVLSSMPIYRMRNGRIIDSVAWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLP 143 (409) T ss_pred cCccccchhhHhhhHHHHHHHHHHHHhhccCceEEeeCCccccchhhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEE Confidence 0000 000 1112334456666666666676543211111111111221 22 22334444555444 888876 Q ss_pred EEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccc Q lcl|Aclame:pro 161 PYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHF 239 (492) Q Consensus 161 v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (492) +..+.+|.+ .+..++|..+.+.++++. .+ +|. +.... T Consensus 144 i~r~~~G~~~~L~pl~p~~v~v~~~~~g--~~-----~y~-------------------~~~~~---------------- 181 (409) T protein:vir:83 144 MAHGSDGYPIRFRVVPPWLVNVELKKGA--RR-----EYR-------------------IGGLN---------------- 181 (409) T ss_pred EEECCCCcEEEEEEECCcceEEEEcCCc--eE-----EEE-------------------Ecccc---------------- Confidence 557888876 577788887766555321 11 111 10000 Q ss_pred eeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC---CcccchhhHHhhh-- Q lcl|Aclame:pro 240 STGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNY---DDQELPEFKRLLR-- 309 (492) Q Consensus 240 ~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~-- 309 (492) +.-.|++++. ...|.|.++.....++..+.+..-..+.+...+.|-.++.-. +.+....++.... T Consensus 182 -----~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p~gil~~~~~ls~e~~~~~~~~~~~~ 256 (409) T protein:vir:83 182 -----VTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVPLYWLGVERRLSETEAVDLMDRWIES 256 (409) T ss_pred -----CccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEeecCCCCCHHHHHHHHHHHHHh Confidence 0012444432 124778787777777665555444445555556666665432 2222223332221 Q ss_pred ----hccceecCCCCcc-eeeecccCHHHHHHHHHHHHHHHHHHhCCCCCCccccc-------cchhHHHHHHHHHHHHH Q lcl|Aclame:pro 310 ----YYGAIKVSDNGGV-DTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFG-------SAPSGVALEFLYTNLNL 377 (492) Q Consensus 310 ----~~~~~~~~~~~d~-~~l~~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~-------~~~Sg~Al~~~~~~l~~ 377 (492) .++.+.+.++++. +.++.......+.+..+..+..|+..=++|.+-.+-.+ +|.....+.+....|.- T Consensus 257 ~~~nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~~~~f~~~tL~P 336 (409) T protein:vir:83 257 RSKYAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQLFSFHDRSSLRP 336 (409) T ss_pred hCCccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCCccccccccHHHHHHHHHHHHHHH Confidence 2233444444443 23322222223344445556677777778765443211 12222222222222222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHH Q lcl|Aclame:pro 378 KADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAEL 455 (492) Q Consensus 378 k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~D~~~E~ 455 (492) .+... +..+.+ .+ + . ....+++.+..-+-.|.++.+++..++ .|+++.-.+.++++.- T Consensus 337 ~~~~i----e~~l~~---~L---l-~--~~~~~~f~~~~llr~d~~~r~~~~~~~~~~G~lT~NE~R~~~glp------- 396 (409) T protein:vir:83 337 KATAV----MAALDR---WA---L-P--SPQHLELNRDDYTRPSLVERATAYKIMIEAGVMEPNEARAMERLH------- 396 (409) T ss_pred HHHHH----HHHHHH---hh---C-C--CCcEEEeehhhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCC------- Confidence 22222 222211 11 1 1 122455556666777888888888776 4788877776654321 Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCcCC Q lcl|Aclame:pro 456 ERIEQEQTEYNKQLPNLDDGGADSAQQQE 484 (492) Q Consensus 456 ~ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 484 (492) +.. ++.+.....- T Consensus 397 ---------------p~~-ggd~l~~~gv 409 (409) T protein:vir:83 397 ---------------SEA-AAVRLSGGGV 409 (409) T ss_pred ---------------CCC-CCcccCCCCC Confidence 000 0000000000 No 258 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=54.11 E-value=0.51 Score=22.18 Aligned_cols=293 Identities=9% Similarity=0.039 Sum_probs=99.2 Q ss_pred HHHHHHHhcCCCccccc-cccccccc-ccccccc----ccccccchHHHHHHHHHHhhhcCCeeecCC------ch---- Q lcl|Aclame:pro 63 ISIGQEYYEQRPDIVKE-PKPVDATG-AVDPLKP----DDRMITNFHANLVDQKVSYIVGKPIAFKHT------DD---- 126 (492) Q Consensus 63 ~~~~~~YY~G~~~i~~~-~~~~~~~~-~~~~~~~----~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~------d~---- 126 (492) |. ++. ...+.-... +....... ...-..| +.+-...+....- .+..+.-|+.+.+= +. T Consensus 1 m~--~~~-~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~---~~~~~~pp~~~~~la~~~~a~~~h~~ 74 (344) T protein:vir:60 1 MS--KKK-GKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECIS---NGRWYEPPISFTGLAKSLRAAVHHSS 74 (344) T ss_pred CC--ccc-CCCCCchHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhh---cCccccCCCCHHHHHHHHHhhhhhcc Confidence 00 000 000000000 00000000 0000000 0000011111000 01011111222110 00 Q ss_pred ----hHHHHHHHHHhcc-HH-HHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeee Q lcl|Aclame:pro 127 ----EVVKRIDEVLGNR-FD-DKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYK 199 (492) Q Consensus 127 ----~~~~~l~~~~~n~-~~-~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~ 199 (492) ....+...+.-|. +. ..+..++.+.+.+|.||+.+-++..|++ .+..++|..+-...+.. ++|. T Consensus 75 ~i~~k~n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~---------~~~~ 145 (344) T protein:vir:60 75 PIYVKRNILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEED---------VYWW 145 (344) T ss_pred chhhhhhHHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCC---------eEEE Confidence 0000111122232 21 2345678888999999999999888876 34555554443322110 0111 Q ss_pred eccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHH Q lcl|Aclame:pro 200 LENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNR 274 (492) Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~ 274 (492) ... .+.. +.|..=.|+++++ ...|.|.+...+.-++.-+. T Consensus 146 v~~------------------~~~~-----------------~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~~ 190 (344) T protein:vir:60 146 VPS------------------FNEP-----------------TAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNES 190 (344) T ss_pred Ecc------------------CCeE-----------------EEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHH Confidence 100 0000 0000001344332 12467766544433332222 Q ss_pred HHHHHHHHHHhcCCc--eEEEecC--CcccchhhHHhhhh------ccceec-CCC---Ccceeeec--ccCHHHHHHHH Q lcl|Aclame:pro 275 RLSDLSNTFKDSNEL--TYVLKNY--DDQELPEFKRLLRY------YGAIKV-SDN---GGVDTIQV--EVPVENSKKYL 338 (492) Q Consensus 275 ~~s~~~~~~~~~~~~--~l~~~g~--~~~~~~~~~~~~~~------~~~~~~-~~~---~d~~~l~~--~~~~~~~~~~i 338 (492) +..-..+.+...+.| ++.+.|. +.+..+.++..++. ++.+.+ .++ +++++... ......+.+.. T Consensus 191 a~~~~~~~f~NG~~pg~il~~~~~~ls~e~~~~ik~~~~~~~g~~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k 270 (344) T protein:vir:60 191 ATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIK 270 (344) T ss_pred HHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcCCCCCcceEEecCCCCccceeEEEcCCChhHHHHHHHH Confidence 211122223333333 4444553 22333333333322 222222 222 23455432 23344567777 Q ss_pred HHHHHHHHHHhCCCCCCccccc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeE Q lcl|Aclame:pro 339 DELYQKIMLFGQAVDFSSDKFG------SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDI 412 (492) Q Consensus 339 ~~l~~~i~~~a~~p~~~~~~~~------~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i 412 (492) +..++.|+..=++|..-.+-.. ++....++.+....+.-.+.+. ++ +...+|.+ .+ T Consensus 271 ~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~~~--------e~----ln~~lg~~------~i 332 (344) T protein:vir:60 271 KASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI--------RE----INGWLGQE------VI 332 (344) T ss_pred HhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHH--------HH----HHHhcCCc------cc Confidence 7888888888888865432211 2233333333222222211111 11 22233321 13 Q ss_pred EeCCC-CCcCHH Q lcl|Aclame:pro 413 SFNYN-KVANTE 423 (492) Q Consensus 413 ~f~~~-~p~d~~ 423 (492) .|.+. +..+.+ T Consensus 333 ~F~~~~l~~~d~ 344 (344) T protein:vir:60 333 RFKNYSLDTDNG 344 (344) T ss_pred ccCccccCCCCC Confidence 34322 222222 No 259 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=52.00 E-value=0.57 Score=21.94 Aligned_cols=444 Identities=13% Similarity=0.112 Sum_probs=168.5 Q ss_pred hhhHHHHHHHHHhcCCceeccCCCcHHHHHHHHhh--cC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Q lcl|Aclame:pro 3 FIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVR--TN--NKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVK 78 (492) Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~ 78 (492) .-||.---.++ ..+.+..=..+|+..+-...+.- .+ .+...- .-.+...+-+.+|+.+..+++-+.. T Consensus 1 m~~lfgf~i~~-~~~~~~~S~vpp~~~~~~~~i~~g~~g~~v~~~g~-----~~~~n~~eLI~~YR~ma~~pEVd~A--- 71 (564) T protein:vir:10 1 MSQLFGFLINE-KEGQKGQSPVPPNDEASVSTVAGGYFGTYVDTSGG-----QNSRNEYELIRRYRDMSLHPEVDSA--- 71 (564) T ss_pred Ccchhcceeee-eccCCCCCcccCCcCCChhhhhccccceeeecccc-----cchhhHHHHHHHHHHHhhccchhhH--- Confidence 11111000011 01111111222322222211100 00 000000 0001111223344444433333221 Q ss_pred ccccccccccccccccccccccchHHHHHHHH-HHhhhcCCeeecCCchhHHHH----H----HHHHh-ccHHHHHHHHH Q lcl|Aclame:pro 79 EPKPVDATGAVDPLKPDDRMITNFHANLVDQK-VSYIVGKPIAFKHTDDEVVKR----I----DEVLG-NRFDDKLHSVL 148 (492) Q Consensus 79 ~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~-~~~l~g~~~~~~~~d~~~~~~----l----~~~~~-n~~~~~~~~~~ 148 (492) ...||+.. +.--..+||.+..++.+..+. + +.+.. =+|+....+.. T Consensus 72 ------------------------v~eIVneaIv~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~ll~F~~~~~e~f 127 (564) T protein:vir:10 72 ------------------------IDEIVNEFVVNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILRMMNFNVNAHEII 127 (564) T ss_pred ------------------------HHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHH Confidence 11122221 111234555555444332222 2 22221 27788889999 Q ss_pred HHHHhcCeEEEEEEeCC----CCceEEEEEcccceEEEecCCCCCc--eEEEEEeeeeccceeEEEEecceEEEEEEecc Q lcl|Aclame:pro 149 TGASNKGIEWLHPYLDE----EGEFKLFRVPAEQGIPIWTDKEHEE--LEAFIRMYKLENETKVEYWDKVTVNYYVYENG 222 (492) Q Consensus 149 ~~~~~~G~~~~~v~~d~----~g~~~i~~~~p~~~~~i~d~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (492) |.+.+.|+.|.+.-.|. +|-..+..+||+.+-.|+..-.... -...++-+. ..+-......+|.+... T Consensus 128 R~WYVDgRi~fHkiid~~~pk~GI~eLr~lDPr~i~~vr~i~~~~~~~~~~v~k~~~------~~~~y~~~~Eyy~Ynp~ 201 (564) T protein:vir:10 128 RNWYVDGRSHYHKVIDLDNPKKGILELRYIDSLKIRKVRQKLKDVDPNRKEIEKGTA------LQYDYGDFIEYYIYNPK 201 (564) T ss_pred hhhhhcceEEEEEEeeCCChhhhhhhhhhhcccceeeeeeeccccccccceeeeeee------eeccccccccceeeccc Confidence 99999999999986653 3556789999999888774221111 111111110 00001111123333211 Q ss_pred eeeeccccccccccccceeccCC-----ccce--EeecCcc----CCCCcHHHHHHHHHHHHHH--HHHHHHHHHhcCCc Q lcl|Aclame:pro 223 SLIPDYSNNLENSKTHFSTGSWG-----KIPF--IPFKNND----LEISDIFMYKTLIDAYNRR--LSDLSNTFKDSNEL 289 (492) Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g-----~iPv--v~~~nn~----~~~s~~~~v~~liD~~~~~--~s~~~~~~~~~~~~ 289 (492) .+...... ....+.+. +||. |.|.+.- .+.-.+.-+...+..+|.+ +-|.+-.-+..+.| T Consensus 202 ~~~g~~~~-------~~~~~~~~~~~~ikI~~daI~y~hSGL~d~~~~~i~gyLhkAIKp~NQLkmlEDAlVIYRitRAP 274 (564) T protein:vir:10 202 GFAGNIPM-------VTGSMDWSNQEGIKIASDAIAQSTSGLMDLNKKMTLSFLHKAIKSLNQLRMIEDSLVIYRLSRAP 274 (564) T ss_pred cccCcccc-------cccccccccccceeechhhcceecccceeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccc Confidence 11000000 00000000 1222 1111110 0111122233334444432 33444444444444 Q ss_pred eEEEecCCcccchhhH-----Hh----hhhccce--------------e------c--CCCCc-ceeeecccC-HHHHHH Q lcl|Aclame:pro 290 TYVLKNYDDQELPEFK-----RL----LRYYGAI--------------K------V--SDNGG-VDTIQVEVP-VENSKK 336 (492) Q Consensus 290 ~l~~~g~~~~~~~~~~-----~~----~~~~~~~--------------~------~--~~~~d-~~~l~~~~~-~~~~~~ 336 (492) -+=+.-.+..+.++.+ +. .++..+. . + -+||. .+.-|.+.. --+... T Consensus 275 eRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGevrddrk~msMlEDyWLPRReGgrgTEItTLpGgqnLgem~ 354 (564) T protein:vir:10 275 ERRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDGQTGEIRDDKKHMSMLEDFWLPRREGGRGTEITTLPGGQNLGELK 354 (564) T ss_pred cceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceecccchhhhhHhhhcccccCCCcccceeeccccCCcchHH Confidence 3322211211222111 11 1110000 0 0 11222 222222221 122334 Q ss_pred HHHHHHHHHHHHhCCCC--CCccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--Ccc---- Q lcl|Aclame:pro 337 YLDELYQKIMLFGQAVD--FSSDKFGSAP-SGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK--GEH---- 407 (492) Q Consensus 337 ~i~~l~~~i~~~a~~p~--~~~~~~~~~~-Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~--~~~---- 407 (492) -+.-+++.++..-.+|- +..++.+-+. -+..|-.-+.....-+.+.+..|..-+.++++.=+-+-|+- .+| T Consensus 355 DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~ 434 (564) T protein:vir:10 355 DVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKSTEILRDELKFTKFIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDME 434 (564) T ss_pred HHHHHHHHHHHHhCCCcccccCCCceeecccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHh Confidence 56777788888777774 2323211111 11234334444555667777788888887776654444432 233 Q ss_pred eeeeEEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHHHHH-------H Q lcl|Aclame:pro 408 KDVDISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIEQEQTEYN-------K 467 (492) Q Consensus 408 ~~i~i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~~~~-------~ 467 (492) ..|.+.|...-.-.+...++ ++..+ +| .+|.+++.+.+ -.++ +..++.++|++|..+.. . T Consensus 435 ~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~ 514 (564) T protein:vir:10 435 EHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGKYFSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVN 514 (564) T ss_pred hcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhh Confidence 45778886555444444433 33333 24 47999999864 4433 35677778887765421 1 Q ss_pred hhccccCCCCCCCCcCCCC---CCCCCC Q lcl|Aclame:pro 468 QLPNLDDGGADSAQQQERS---NNKESE 492 (492) Q Consensus 468 ~~~~~~~~~~~~~~~~~~~---~~~~~e 492 (492) ..++....+.....++... ...++| T Consensus 515 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 542 (564) T protein:vir:10 515 MLDDMEKQNQAFAPELQAAQDDLAAERE 542 (564) T ss_pred cCCCccCCCCcCCcchhhhccccccccC Confidence 1111111110000000000 000011 No 260 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=51.78 E-value=0.57 Score=21.91 Aligned_cols=327 Identities=10% Similarity=0.061 Sum_probs=118.5 Q ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec---CC----c---hhHH Q lcl|Aclame:pro 60 LPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK---HT----D---DEVV 129 (492) Q Consensus 60 ~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~---~~----d---~~~~ 129 (492) ..-+.++..++...-.....+....... +.-........+|+.+++-+..-|+.+- .+ + +... T Consensus 1 M~~f~k~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~~~~~ 73 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNE-------AVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLISMAG 73 (378) T ss_pred CchhhhhhhhhhcccccCCcceeeeecc-------chhhhhHHHHHHHHHHHHhHhhCceeEEEEecccccccccccccc Confidence 1111111112222110000000000000 0001122334466666666666665431 11 0 0111 Q ss_pred HHHHH-HHh--c---cHHHHHHHHHHHHHhcCeEEEE-EEeCCCCceEEEEEcccceEEEecCCCCCceEEEEEeeeecc Q lcl|Aclame:pro 130 KRIDE-VLG--N---RFDDKLHSVLTGASNKGIEWLH-PYLDEEGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN 202 (492) Q Consensus 130 ~~l~~-~~~--n---~~~~~~~~~~~~~~~~G~~~~~-v~~d~~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 202 (492) .-+.. +.. | ....+...+....+.+|.||++ ++.+.+|.+...+. .. . T Consensus 74 ~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~---------~~----------------~ 128 (378) T protein:vir:85 74 SDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLLF---------AN----------------D 128 (378) T ss_pred chHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEEe---------cC----------------C Confidence 12222 221 3 2345556678888999999976 44454444322111 00 0 Q ss_pred ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNT 282 (492) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~~~v~~liD~~~~~~s~~~~~ 282 (492) .. .|....+ +++.+.-..-+....+..+.++++.. +.+ T Consensus 129 --~~-~~~~~dv-----------------------------------ih~~~~~~~~~~~~~~~~a~~~~~~~---~~~- 166 (378) T protein:vir:85 129 --KK-EYKPEEL-----------------------------------VRLVSPFYINEDTSILDNALASIQTK---LEQ- 166 (378) T ss_pred --CE-EEcccce-----------------------------------EEEecCcCccchhhHHHHHHHHHHHH---Hhc- Confidence 00 0011111 11111000111111222233332221 111 Q ss_pred HHhcCCceEEEecCCc-ccchhhH----Hhh-------hhccceecCCCCcceeeecccCHHHHHHHHHHHHHHHHHHhC Q lcl|Aclame:pro 283 FKDSNELTYVLKNYDD-QELPEFK----RLL-------RYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQ 350 (492) Q Consensus 283 ~~~~~~~~l~~~g~~~-~~~~~~~----~~~-------~~~~~~~~~~~~d~~~l~~~~~~~~~~~~i~~l~~~i~~~a~ 350 (492) ....-++.+.+... +..++.+ ... ..++++.++++.+.+.++.......+ ..++.++..|+..=+ T Consensus 167 --~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fg 243 (378) T protein:vir:85 167 --GKLRGLLKINAFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIELIKSELLTGYF 243 (378) T ss_pred --CCcceEEEeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceecCCCceEEeccCChhhhhH-HHHHHHHHHHHHHhC Confidence 11122333333211 1111111 111 12345566666565555433222333 345666677877777 Q ss_pred CCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CcceeeeEEeCCC Q lcl|Aclame:pro 351 AVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK-------------GEHKDVDISFNYN 417 (492) Q Consensus 351 ~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-------------~~~~~i~i~f~~~ 417 (492) +|..-.. +++.....+ ..+..+|.-.+..+...+..+ ....++.+.+..- T Consensus 244 VPp~~l~--~s~~e~~~~---------------~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l 306 (378) T protein:vir:85 244 MNENILL--GTATQEQQI---------------YFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLF 306 (378) T ss_pred CCHHHhc--CCchHHHHH---------------HHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhh Confidence 7754331 111111111 122333333333332222110 0112344445566 Q ss_pred CCcCHHHHHHHHHHHh--ccCChHHHHHhCCC--CCCHHH-----HHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC Q lcl|Aclame:pro 418 KVANTELQVQTAQQSM--GIVSHETVLENHPF--VEDLQA-----ELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN 488 (492) Q Consensus 418 ~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~--v~D~~~-----E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (492) +-.|..+.++.+.++. |+++.-.+.++++. +++-+. -+..+..- . ...........+++ T Consensus 307 ~~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~gGD~~~~~~N~~~~~~~--------~----~~~~~~~~~~~~~e 374 (378) T protein:vir:85 307 KFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDIYIANLNAVAVKNL--------S----DLQGSRKDVASTDE 374 (378) T ss_pred hhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccccccc--------h----hhcCccCCCCCCCC Confidence 7788999999888874 78998888887753 222110 01111100 0 00000111111112 Q ss_pred CCCC Q lcl|Aclame:pro 489 KESE 492 (492) Q Consensus 489 ~~~e 492 (492) ..+| T Consensus 375 ~~n~ 378 (378) T protein:vir:85 375 TNNQ 378 (378) T ss_pred CCCC Confidence 2222 No 261 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=51.36 E-value=0.58 Score=21.87 Aligned_cols=298 Identities=10% Similarity=0.045 Sum_probs=100.8 Q ss_pred cCCCccccccc-ccccccccccc-cc----ccccccchHHHHHHHHHHhhhcCCeeecC------Cchh----HH----H Q lcl|Aclame:pro 71 EQRPDIVKEPK-PVDATGAVDPL-KP----DDRMITNFHANLVDQKVSYIVGKPIAFKH------TDDE----VV----K 130 (492) Q Consensus 71 ~G~~~i~~~~~-~~~~~~~~~~~-~~----~~ri~~n~~~~ivd~~~~~l~g~~~~~~~------~d~~----~~----~ 130 (492) ..++-...... .........-. .| +++-...+...+-+....| +--|+.+.+ .+.- .. . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~epp~~~~~La~l~~~n~~h~~~i~~k~N~ 79 (348) T protein:vir:26 1 MTEQLIHSHTTDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDY-WEPPISLKGLAEIANANGYHGSLLKARANY 79 (348) T ss_pred CCccccchhhccccCCceEEEecCCCeeecCcchHHHHHHHHhcCCCcc-ccCCCCHHHHHHHHhhhhhhhhhHhhhhhH Confidence 11110000000 00000000000 00 0010111111111110001 101111110 0000 00 0 Q ss_pred HHHHHHhcc-H-HHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEE Q lcl|Aclame:pro 131 RIDEVLGNR-F-DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVE 207 (492) Q Consensus 131 ~l~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~ 207 (492) ....+.-|. + ...+.+++.+.+.+|.||+.+-++..|++ .+..++|..+-+.-+ +. .++...++..+ T Consensus 80 l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d----~~-----~~~~~~~g~~~- 149 (348) T protein:vir:26 80 VAGRFMNGGGLPMYKMNSACWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKN----GD-----FVQLLRNNEQK- 149 (348) T ss_pred HhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeec----Cc-----EEEEEecCeEE- Confidence 000111232 1 23456677888999999999999988875 355555544322111 00 00000000000 Q ss_pred EEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 208 YWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLSDLSNT 282 (492) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s~~~~~ 282 (492) .+.. + -|+++++ ...|.|.+...+.-+..-+.+..-.... T Consensus 150 ----------~f~~-----------------------~--dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~ 194 (348) T protein:vir:26 150 ----------VFKA-----------------------K--DVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRY 194 (348) T ss_pred ----------EEcC-----------------------c--cEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 0000 0 1222221 1246777655444443222222222233 Q ss_pred HHhcCCceEEE--ecC--CcccchhhHHhhhhc-------cceecCC---CCcceeeec--ccCHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 283 FKDSNELTYVL--KNY--DDQELPEFKRLLRYY-------GAIKVSD---NGGVDTIQV--EVPVENSKKYLDELYQKIM 346 (492) Q Consensus 283 ~~~~~~~~l~~--~g~--~~~~~~~~~~~~~~~-------~~~~~~~---~~d~~~l~~--~~~~~~~~~~i~~l~~~i~ 346 (492) +...+.|-.++ .+. +.+..+.++..++.. +++.+.. ++++++... ......+.+..+.-+..|+ T Consensus 195 f~NGa~pg~Il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa 274 (348) T protein:vir:26 195 YLNGAHMGFIFYATDPNLSEADEKALKEKIASSKGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIF 274 (348) T ss_pred HhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHH Confidence 44444454444 442 223333333333221 1233322 223444432 2233456666677777888 Q ss_pred HHhCCCCCCccc----cc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEeCCCCCc Q lcl|Aclame:pro 347 LFGQAVDFSSDK----FG--SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNYNKVA 420 (492) Q Consensus 347 ~~a~~p~~~~~~----~~--~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f~~~~p~ 420 (492) ..=++|..-.+- .+ +++...+..+....+. =....+..++. ..++... ...+++.|++..-. T Consensus 275 ~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~----P~~~~ie~~ln-------~~l~~~~-~~~~~fdl~~~~e~ 342 (348) T protein:vir:26 275 VGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVI----PVCKRFMDAVN-------NDPEIPD-NLKLKFNLNPGVES 342 (348) T ss_pred HHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHH----HHHHHHHHHHh-------hhhCCCC-ccEEEEecCccccc Confidence 888888643321 11 2333323332222221 11222222221 1222222 22344444443322 Q ss_pred CHHHHH Q lcl|Aclame:pro 421 NTELQV 426 (492) Q Consensus 421 d~~e~~ 426 (492) +.+..+ T Consensus 343 ~~~~a~ 348 (348) T protein:vir:26 343 ANGSAV 348 (348) T ss_pred chhhcC Confidence 222222 No 262 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=51.12 E-value=0.59 Score=21.84 Aligned_cols=360 Identities=8% Similarity=0.033 Sum_probs=136.5 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccc-cchHHHHHHHHHHhhhcCCeee Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMI-TNFHANLVDQKVSYIVGKPIAF 121 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~-~n~~~~ivd~~~~~l~g~~~~~ 121 (492) +.+-.++++ .....+ .....++.... .. .........++. ++.....|+..++-+.+-|+.+ T Consensus 1 Mg~~~~f~~----k~~~~~--~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~~V~~~I~~ia~~iA~~p~~~ 63 (403) T protein:vir:80 1 MGLFNFFRR----KTRSEP--TNAISWFLTQE------AY-----DTLAIPGYTRLSDNPEVRMAVHKIAELISSMTIHL 63 (403) T ss_pred Ccccccccc----cccccc--cchhhhhcccc------cc-----cccccchhhhhhhhHHHHHHHHHHHHhhhhCceEE Confidence 221111110 000000 00000000000 00 000000001111 1223456677777776667765 Q ss_pred c--CCch--hH-HHHHHHHHh--cc---HHHHHHHHHHHHHhc--CeEEEEEEeCCCCce-EEEEEcccceEEEecCCCC Q lcl|Aclame:pro 122 K--HTDD--EV-VKRIDEVLG--NR---FDDKLHSVLTGASNK--GIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEH 188 (492) Q Consensus 122 ~--~~d~--~~-~~~l~~~~~--n~---~~~~~~~~~~~~~~~--G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~ 188 (492) - .++. .. ......+.. |. -..+...++.+.+.. |.||+.+.++..|.+ .+..++|..+-++.+++. T Consensus 64 ~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g- 142 (403) T protein:vir:80 64 MQNTDNGDIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTG- 142 (403) T ss_pred EEecCCceeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCc- Confidence 1 1111 11 112222332 32 234445556666664 667887777777776 466788877766554321 Q ss_pred CceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----c-cCCCCcH Q lcl|Aclame:pro 189 EELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----N-DLEISDI 262 (492) Q Consensus 189 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n-~~~~s~~ 262 (492) ..+|.... .| +.. -|++|.. + ..|.|.+ T Consensus 143 -----------------~~~~y~~~--~~-------------------------~~~--eiih~~~~~~~~~~~~G~s~~ 176 (403) T protein:vir:80 143 -----------------YQIWYQGK--AY-------------------------NYD--EVLHFIVNPDPEKPYMGRGYR 176 (403) T ss_pred -----------------eEEEEeec--cc-------------------------chh--hEEEEeccCCCcCccccccHH Confidence 00110000 00 000 1222221 1 1366666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC---cccchhhHHhh--------hhccceecCCCC-cceeee-ccc Q lcl|Aclame:pro 263 FMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD---DQELPEFKRLL--------RYYGAIKVSDNG-GVDTIQ-VEV 329 (492) Q Consensus 263 ~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~--------~~~~~~~~~~~~-d~~~l~-~~~ 329 (492) ..+...+.....+..-....+...+.|-.++.-.. .+..++....+ ..++.+.++.++ +..-++ ... T Consensus 177 ~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 256 (403) T protein:vir:80 177 VVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAATAELSSEEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSL 256 (403) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCChHHHHHHHHHHHHHHhhhhhcCCeeeecccccccceeccCCH Confidence 65555555544443334445555555665553321 22222222211 122333333322 222111 122 Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCC Q lcl|Aclame:pro 330 PVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD----IKG 405 (492) Q Consensus 330 ~~~~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~----~~~ 405 (492) ....+.+..+..+..|+..=++|..-.+ .+...+..... ....+|.-.++.+...+. ... T Consensus 257 ~d~q~~e~~~~~~~~Ia~~fgVPp~~lg-~~~~~~~~~~~---------------f~~~~l~P~~~~ie~~l~~kll~~~ 320 (403) T protein:vir:80 257 KDLAIHETVELDKRTVAGIFGVPAFLLG-VGKYDKDEYNN---------------FINSTILPIAKGIEQELTRKLLISP 320 (403) T ss_pred HHHHHHHHHHHhHHHHHHHhCCCHHHcC-CCCccHHHHHH---------------HHHHHHHHHHHHHHHHHHHhccCCC Confidence 2233444555566666666666653332 12222222211 112222222222222221 111 Q ss_pred cceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCC--CHHHHHHHHHHHHHHHHHhhccccCCCCCC-- Q lcl|Aclame:pro 406 EHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVE--DLQAELERIEQEQTEYNKQLPNLDDGGADS-- 479 (492) Q Consensus 406 ~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~v~--D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~-- 479 (492) + ..+++....-+..|..+.++++.++ .|+++.-.+++.++.-. ..+.-+.. ....+....+... T Consensus 321 ~-~~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~---------~n~~pl~~~~~~~~~ 390 (403) T protein:vir:80 321 D-LYFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVIL---------ENYIPLDKIGDQNKL 390 (403) T ss_pred C-cEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeec---------ccccchhhccchhhc Confidence 2 2234444566778999999988877 48899888888775321 11100000 0000000000000 Q ss_pred CCcCCCCCCCCCC Q lcl|Aclame:pro 480 AQQQERSNNKESE 492 (492) Q Consensus 480 ~~~~~~~~~~~~e 492 (492) ...+....+.+.| T Consensus 391 k~ge~~~~~~~~~ 403 (403) T protein:vir:80 391 KGGEKGGADGQTD 403 (403) T ss_pred cCCCCCCCCCCCC Confidence 0000011111111 No 263 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=50.84 E-value=0.6 Score=21.81 Aligned_cols=328 Identities=9% Similarity=0.054 Sum_probs=120.0 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeee- Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF- 121 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~- 121 (492) +.+ +.++. . ..+ ...+.|... ....... +.-........+|+..++-+..-|+.+ T Consensus 1 M~i---f~~~~----~----~~~-~~~~~~~~~-----~~~~~~~-------~~~~~~~~v~~~v~~Ia~~iA~lp~~~~ 56 (378) T protein:vir:94 1 MNL---FGKVV----S----FSR-GKLNNDTQR-----VTAWQNE-------AVEYTSAFVTNIHNKIANEITKVEFNHV 56 (378) T ss_pred Cch---hHHhH----h----hhh-cccccCcce-----eeeeecc-------hhhhhhHHHHHHHHHHHHhHhhCceeee Confidence 111 11110 0 000 011111110 0000000 000111334556777777776667643 Q ss_pred c--CCc---h----hH-HHHHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEE-EEeCCCCceEEEEEcccceEEEecC Q lcl|Aclame:pro 122 K--HTD---D----EV-VKRIDEVLG--N---RFDDKLHSVLTGASNKGIEWLH-PYLDEEGEFKLFRVPAEQGIPIWTD 185 (492) Q Consensus 122 ~--~~d---~----~~-~~~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~-v~~d~~g~~~i~~~~p~~~~~i~d~ 185 (492) . ..+ + .. ..+...+.. | .-..+...+....+..|.||++ ++.+.+|++...+ T Consensus 57 ~~~~~~~~~~~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~------------ 124 (378) T protein:vir:94 57 KYKKSDVGSDTLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLL------------ 124 (378) T ss_pred eecccccccccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEE------------ Confidence 1 110 0 01 112222221 2 2345566678889999999976 4555545432111 Q ss_pred CCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCccCCCCcH-HH Q lcl|Aclame:pro 186 KEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDI-FM 264 (492) Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~~~s~~-~~ 264 (492) +... . . .+.... |+++.+ +...+.. .. T Consensus 125 ------------~~~~-~--~-~~~~~d-----------------------------------vih~~~-~~~~~~~~~~ 152 (378) T protein:vir:94 125 ------------FAND-K--K-EYKPEE-----------------------------------LVRLTS-PFYINEDTSI 152 (378) T ss_pred ------------EecC-c--E-Eechhc-----------------------------------eeeecC-cCCcccchhH Confidence 0000 0 0 000111 122211 0111111 11 Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC-cccchh----hHHhhh-------hccceecCCCCcceeeecccCHH Q lcl|Aclame:pro 265 YKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD-DQELPE----FKRLLR-------YYGAIKVSDNGGVDTIQVEVPVE 332 (492) Q Consensus 265 v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~-~~~~~~----~~~~~~-------~~~~~~~~~~~d~~~l~~~~~~~ 332 (492) +..+..+++.... + ....-++...+.- .+..++ +....+ .++++.++++.+++.++...... T Consensus 153 ~~~~~~~~~~~~~---~---~~~~g~l~~~~~l~~~~~~~~~e~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~ 226 (378) T protein:vir:94 153 LDNALASIQTKLE---Q---GKLRGLLKINAFLDIDNTQEYREKALATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVL 226 (378) T ss_pred HHHHHHHHHHHHh---h---CCcccceeeCCcCCHHHHHHHHHHHHHHHHHhhcccccccceeccCCceEEEccCChHHh Confidence 2222222222211 1 1112223333321 111112 222111 22456666666655554333222 Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCccccccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------- Q lcl|Aclame:pro 333 NSKKYLDELYQKIMLFGQAVDFSSDKFGSAPS-GVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK------- 404 (492) Q Consensus 333 ~~~~~i~~l~~~i~~~a~~p~~~~~~~~~~~S-g~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~------- 404 (492) .+ ..++.+++.|+..=++|..-. .+..+ ...+. .+..+|.-.+..+...+..+ T Consensus 227 ~~-~~~~~~~~~Ia~~fgvPp~~l---~g~~~e~~~~~---------------f~~~tl~P~~~~ie~~l~~~Ll~~~e~ 287 (378) T protein:vir:94 227 NK-DEIDLIKSELLTGYFMNENIL---LGTATQEQQIY---------------FYNSTIIPLLIQLEKELTYKLISTNRR 287 (378) T ss_pred hH-HHHHHHHHHHHHHhCCCHHHh---cCCchHHHHHH---------------HHHHHHHHHHHHHHHHHHhhcCChhHh Confidence 33 445666777777667764332 22211 11111 22222322222222222110 Q ss_pred ------CcceeeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHhhccccC Q lcl|Aclame:pro 405 ------GEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPF--VEDLQAELERIEQEQTEYNKQLPNLDD 474 (492) Q Consensus 405 ------~~~~~i~i~f~~~~p~d~~e~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~~ri~~E~~~~~~~~~~~~~ 474 (492) .....+.+.++.-+-.|..+.++.+.++ .|+++.-.+.++++. +++-+.-+-. ....+... T Consensus 288 ~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~NE~R~~~g~~p~~ggd~~~~~---------~n~~~~~~ 358 (378) T protein:vir:94 288 RVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIAN---------LNAVAVKN 358 (378) T ss_pred hhhhhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeec---------ccccchhc Confidence 1123355556777788999999998887 478998888887653 2221100000 00000000 Q ss_pred -CCCCCCCcC-CCCCCCCCC Q lcl|Aclame:pro 475 -GGADSAQQQ-ERSNNKESE 492 (492) Q Consensus 475 -~~~~~~~~~-~~~~~~~~e 492 (492) +....+++. .++++..+| T Consensus 359 ~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 359 LSDLQGNRKDVTSTDETNNQ 378 (378) T ss_pred chhcccccCCCCCCCCCCCC Confidence 000111111 112222222 No 264 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=48.41 E-value=0.67 Score=21.54 Aligned_cols=391 Identities=12% Similarity=0.031 Sum_probs=162.7 Q ss_pred CceeccCCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccc----cc--cc Q lcl|Aclame:pro 18 GNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATG----AV--DP 91 (492) Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~----~~--~~ 91 (492) -|--....| .|+..++.... ...+....-|. +.-+++.+. .+.. .. +- T Consensus 1 ~~~~~~~~p--------------~~~~~~~~~~~--------~~~~~~~~g~~-~~D~~lr~~---gg~~~~~~~l~~~m 54 (446) T protein:vir:98 1 MNMEVRNAP--------------TPAIRRRTIYA--------MEHLGLATSYL-SEDGGYKRA---GKPTYQQLSAWDEA 54 (446) T ss_pred CcccccCCC--------------chhhhhhhhhc--------cccchhhcccC-CcchHhhhc---CCChHHHHHHHHHH Confidence 222222222 12222222110 01111111121 111222111 0000 00 00 Q ss_pred cccccccccchHHHHHHHHHHhhhcCCeeecCCchhHHHHHHHHHhc-cHHHHHHHHHHHHHhcCeE-EEEEEeCCCCce Q lcl|Aclame:pro 92 LKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVLGN-RFDDKLHSVLTGASNKGIE-WLHPYLDEEGEF 169 (492) Q Consensus 92 ~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~n-~~~~~~~~~~~~~~~~G~~-~~~v~~d~~g~~ 169 (492) .+ ......-...+...-+.+-+.++.+.+++..+++.+++.+ .+..... ...+++.||.+ .+.+|.-..|.- T Consensus 55 ~e-----~D~~v~s~l~~Rk~av~~~~w~V~p~~~~~a~~v~~~l~~~~~~~~~~-~~ldai~~G~s~~Eivw~~~~g~~ 128 (446) T protein:vir:98 55 AQ-----TEPIIAQGLDSIALSVLNKVGPYQHGDKRIKKFIDDQLRNRAKTWISH-CVKSIMTYGFSLSEQIYAHGARDN 128 (446) T ss_pred Hh-----cchHHHHHHHHHHHHhhcCCceecCccHHHHHHHHHHHhhcCchhHHH-HHHHHHhhCceeeeEEEeeccccc Confidence 01 1233444556666666778888888888888888888765 3433333 35788889986 466776443321 Q ss_pred -EEEE------EcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceec Q lcl|Aclame:pro 170 -KLFR------VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTG 242 (492) Q Consensus 170 -~i~~------~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (492) ..++ +.|...-=.|+.. ..+..+........ ....|.+. ..+.. ...... ........+- T Consensus 129 ~p~~~~d~~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~--~~~~~--~~~~~~-----~~~~g~~~~i 195 (446) T protein:vir:98 129 MPATVLDDIVNYHPLQVMLIANDN--GRIVDGDTVTASQY--KSGYWVPL--PPYRI--GDPPKK-----VDVVGSHVRL 195 (446) T ss_pred ccchhhccccccccccceeeeccC--Cccccccccchhhc--ccccccCc--ccchh--hhhhhh-----cccCcccccc Confidence 1111 1221111112211 11100000000000 00000000 00000 000000 0000000111 Q ss_pred cCCccceEee---cCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEec---CCcccch-------------h Q lcl|Aclame:pro 243 SWGKIPFIPF---KNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKN---YDDQELP-------------E 303 (492) Q Consensus 243 ~~g~iPvv~~---~nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g---~~~~~~~-------------~ 303 (492) |..++=+..+ ..++.|.|.+..+.-.---=+..+-+.+.-++.|..|+.+.+- .+.++.. . T Consensus 196 P~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~ 275 (446) T protein:vir:98 196 PSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQ 275 (446) T ss_pred cccceEEEEecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHH Confidence 1111111111 1246778877664443333355566788889999999999873 3222111 1 Q ss_pred hHHhh---hhccceec-----CCCCcceeeecccCH-HHHHHHHHHHHHHHHHHhCCCCCCcccc-ccchhHHHH-HHHH Q lcl|Aclame:pro 304 FKRLL---RYYGAIKV-----SDNGGVDTIQVEVPV-ENSKKYLDELYQKIMLFGQAVDFSSDKF-GSAPSGVAL-EFLY 372 (492) Q Consensus 304 ~~~~~---~~~~~~~~-----~~~~d~~~l~~~~~~-~~~~~~i~~l~~~i~~~a~~p~~~~~~~-~~~~Sg~Al-~~~~ 372 (492) ..+.+ ....+..+ +++..+++++...+. ..++.+++...+.|...--...++.+.. ++..|. |+ +... T Consensus 276 L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~-ala~vh~ 354 (446) T protein:vir:98 276 AEDALRRLSTDSGLVLTQLSKEQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTG-RASEIQL 354 (446) T ss_pred HHHHHHhccccceeeeecccCCCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchh-hhHHHHH Confidence 11122 11122222 677788888766443 4588999999998877543332332211 111111 11 1111 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCc-cee---eeEEeCCCCCcCHHHHHHHHHHHh--cc-CC--hHHHH Q lcl|Aclame:pro 373 TNLNLKADKLARKAKVAIQ-ELLWFVFEHFDIKGE-HKD---VDISFNYNKVANTELQVQTAQQSM--GI-VS--HETVL 442 (492) Q Consensus 373 ~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~-~~~---i~i~f~~~~p~d~~e~~~~~~k~~--g~-vs--~et~l 442 (492) .-....++.-.+.+...+. ++++-++.+-..... ... -.+.|....+.|....++++.+++ |+ ++ .+.+. T Consensus 355 ~V~~d~~~aDa~~i~~tln~~Li~~l~~lNf~~~~~~~~~~~~~~~~~~~e~eDl~~~a~~~~~L~~~G~~~p~~~~~ir 434 (446) T protein:vir:98 355 ELFDGKINSIFDTVIHAFTEQVIGNLIRLNFDPALYPLASNTGYITRLPGRATDLAALVEAIKQMHDMGFLVDGDKDHIR 434 (446) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccccccceeccCChhhHHHHHHHHHHHHhCCccccccHHHHH Confidence 1122223334445555553 455555543222111 111 124566667889999999998885 54 44 44566 Q ss_pred HhCCCCCCHHHHH Q lcl|Aclame:pro 443 ENHPFVEDLQAEL 455 (492) Q Consensus 443 ~~l~~v~D~~~E~ 455 (492) +.++. .++++-- T Consensus 435 e~~gi-P~~~~~~ 446 (446) T protein:vir:98 435 SITGL-PDAISST 446 (446) T ss_pred HHhCc-CCCCCCC Confidence 66543 2111000 No 265 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=47.42 E-value=0.7 Score=21.43 Aligned_cols=416 Identities=11% Similarity=0.080 Sum_probs=151.6 Q ss_pred CCCcHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchH Q lcl|Aclame:pro 24 SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFH 103 (492) Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~ 103 (492) +..|+ .+ ..+.+|.-+.++++...+.. .-.||+-.-+++..+.- .. ..+ +.. ..... T Consensus 1 ~~~~~--~~----~~gl~p~rl~~i~~~~~~~~---------~~~~~~~~~~~Lr~~~~----~~--ly~-~m~-~D~hi 57 (488) T protein:vir:95 1 MADIT--ET----QESLPPFRMGEVGSLGLKVK---------NGRIYEEPRQALRFPES----IK--TFQ-LMM-RDPAV 57 (488) T ss_pred CCCcc--cc----CCCCCHHHHHHHHHHhhccc---------cchhhccchhhhcccch----HH--HHH-HHh-hChHH Confidence 22110 00 12334444444433221100 01222211111110000 00 000 000 12445 Q ss_pred HHHHHHHHHhhhcCCeeecCCc-----hh---HHHHHHHHHhc---cHHHHHHHHHHHHHhcCeE-EEEEEeCCCCceEE Q lcl|Aclame:pro 104 ANLVDQKVSYIVGKPIAFKHTD-----DE---VVKRIDEVLGN---RFDDKLHSVLTGASNKGIE-WLHPYLDEEGEFKL 171 (492) Q Consensus 104 ~~ivd~~~~~l~g~~~~~~~~d-----~~---~~~~l~~~~~n---~~~~~~~~~~~~~~~~G~~-~~~v~~d~~g~~~i 171 (492) .-.+.+....+.+.+..+.+.+ .. ..+.++.++.+ .+.....++. ++.-+|.+ ++++|....+.... T Consensus 58 ~s~l~~Rk~av~~~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~ 136 (488) T protein:vir:95 58 AASVNIIKMFVRKVNWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGK 136 (488) T ss_pred HHHHHHHHHHHhcCCceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHH-Hhhcccceeeeeeeecccccccc Confidence 5667777777888887776421 11 23445555543 3445555554 68888985 56677543221111 Q ss_pred EE-------EcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccce-ecc Q lcl|Aclame:pro 172 FR-------VPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFS-TGS 243 (492) Q Consensus 172 ~~-------~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 243 (492) .. +.|..+.+. +..-++++..+......+......... .. ........ ... T Consensus 137 ~~~~~~dg~~~~~~i~~R--------pq~~~~~f~~d~d~~l~~~~~~~~~~~-------~~------~~~~~~~~~~~~ 195 (488) T protein:vir:95 137 YQSKFDDGLIGWAKLPIR--------NQSTLDKWYFDEDFRRVTGVRQNLRNV-------SH------IAGAINLGERPL 195 (488) T ss_pred ccccccCCeeeeeeeeec--------CcccccceeeccCCCceeecccccccc-------cc------cccccccccccc Confidence 11 111111110 000001111100000000000000000 00 00000000 000 Q ss_pred CCccce---Eeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCC---cccc-hh---hHHhh Q lcl|Aclame:pro 244 WGKIPF---IPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD---DQEL-PE---FKRLL 308 (492) Q Consensus 244 ~g~iPv---v~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~~~g~~---~~~~-~~---~~~~~ 308 (492) -..+|. |.+. .++.|.|.+..+.-.---=+..+...+.-++.|..|+.+.+|.. .... .+ ....+ T Consensus 196 ~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~ 275 (488) T protein:vir:95 196 TRKLPRAKFMLFKYDDEYGNPEGRSPLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYC 275 (488) T ss_pred cccccccceEEEeecCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHH Confidence 011331 2222 34567777765433332223455667777888878887777631 1111 11 11111 Q ss_pred hh---c------cceecCCCCccee---------eecc-cCHHHHHHHHHHHHHHHHHHh--CCCCCCccccccchhHHH Q lcl|Aclame:pro 309 RY---Y------GAIKVSDNGGVDT---------IQVE-VPVENSKKYLDELYQKIMLFG--QAVDFSSDKFGSAPSGVA 367 (492) Q Consensus 309 ~~---~------~~~~~~~~~d~~~---------l~~~-~~~~~~~~~i~~l~~~i~~~a--~~p~~~~~~~~~~~Sg~A 367 (492) .. . ..+.++.+-++++ +... .+...+..+++...+.|...- ++-....++.|+...|.. T Consensus 276 ~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~iLGqtLT~~~~~~Gs~Al~~v 355 (488) T protein:vir:95 276 KTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAFMSDVLAMGQSKYGSFSLADS 355 (488) T ss_pred HHHHHHhhccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHHhccccccccCcchhhhHHHH Confidence 10 0 1123344333332 1111 223346777787777775533 222222222222222211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCcceeeeEEeCCCCCcCHHHHHHHHHHHh--cc-CCh----H Q lcl|Aclame:pro 368 LEFLYTNLNLKADKLARKAKVAIQ-ELLWFVFEHFDIKGEHKDVDISFNYNKVANTELQVQTAQQSM--GI-VSH----E 439 (492) Q Consensus 368 l~~~~~~l~~k~~~~~~~~~~~l~-~~~~li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~~~~~k~~--g~-vs~----e 439 (492) = ..-....+..-.+.+...+. ++++-++.+ +.........+.|....+.|..+.++++.+++ |+ ++. + T Consensus 356 h---~ev~~~i~~aDa~~i~~tln~~li~~l~~~-Nfg~~~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~ 431 (488) T protein:vir:95 356 K---TSLLAMSVDILLKQIKNVINRDLVAQTYAL-NMWDDEEHVQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSN 431 (488) T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCccEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHH Confidence 1 11122233334444555553 355444433 22222223568888888999999999998874 65 663 4 Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 440 TVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 440 t~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .+.+.++. ..++..-. +..-. ..........+....++........++. T Consensus 432 ~i~e~~gi-p~~~~~e~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (488) T protein:vir:95 432 KLREHIGL-PPADESQP-VSEKL--SPNSQSRSGDGYKTAGEGTAKTPSAKDP 480 (488) T ss_pred HHHHHhCC-CCCCCCcc-ccccC--CCCCCCCCCcccCCCcccCCcccccccc Confidence 55666653 21110000 00000 0000000000000111111111111111 No 266 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=41.90 E-value=0.91 Score=20.82 Aligned_cols=342 Identities=9% Similarity=-0.011 Sum_probs=123.2 Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCCeeec Q lcl|Aclame:pro 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) Q Consensus 43 ~~~~~~l~~~i~~~~~~~~~~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~ 122 (492) +.+ +.++..+.. .......+..+.. .-...-+.......+|+..++-+..-|+.+- T Consensus 1 Mg~---f~~l~~~~~----~~~~~~~~~~~~~-----------------~~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~ 56 (376) T protein:vir:78 1 MGF---FSELFKRNK----EIEWMWDLDFLED-----------------KTTKVYLKKMALNTCVKHIARTIAKSDFRLK 56 (376) T ss_pred Cch---hhhhhccCC----ccccccchhhccc-----------------cchhhhhhhHHHHHHHHHHHHhhcccceeec Confidence 221 222211100 0000000000000 0000001123344566777766666777664 Q ss_pred CCchhHHH-HHHHHHh--c---cHHHHHHHHHHHHHhcCeEEEEEEeCCCCceEE-EEEcccceEEEecCCCCCceEEEE Q lcl|Aclame:pro 123 HTDDEVVK-RIDEVLG--N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFKL-FRVPAEQGIPIWTDKEHEELEAFI 195 (492) Q Consensus 123 ~~d~~~~~-~l~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~i-~~~~p~~~~~i~d~~~~~~~~~~i 195 (492) ..+..... ....+.. | ....+...+..+.+.+|.+|+++.++..|.+.- ..+.|....+. T Consensus 57 ~~~~~~~~~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~------------- 123 (376) T protein:vir:78 57 NGETSVRDKLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPD------------- 123 (376) T ss_pred cccccccchHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeee------------- Confidence 33322222 2223332 3 234566777888899999999988777654311 11111111110 Q ss_pred EeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecCc-cCCCCcHHHHHHHHHHHHH Q lcl|Aclame:pro 196 RMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNN-DLEISDIFMYKTLIDAYNR 274 (492) Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn-~~~~s~~~~v~~liD~~~~ 274 (492) .++. +. +..|.... . .+-.. |++|+.+ ..+.+-. .++...+.. T Consensus 124 ~~~~------~~------~~~~~~~~--~-----------------~~~~e--vih~~~~~~~~~~~~---~~~~~~~~~ 167 (376) T protein:vir:78 124 VFEG------VT------VKDYRYNR--N-----------------FSMDD--VIFLEYGNERLSAFT---DGMFEDYGE 167 (376) T ss_pred eeee------ee------eecceeee--e-----------------ecccc--EEEeccCCCCchhhh---hHHHHHHHH Confidence 0000 00 00000000 0 00000 1222211 1111211 223333333 Q ss_pred HHHHHHHHHHh--cCCceEEEecC---CcccchhhHHhhh--------hc-cceecCCCCcceeeeccc-----CHHHHH Q lcl|Aclame:pro 275 RLSDLSNTFKD--SNELTYVLKNY---DDQELPEFKRLLR--------YY-GAIKVSDNGGVDTIQVEV-----PVENSK 335 (492) Q Consensus 275 ~~s~~~~~~~~--~~~~~l~~~g~---~~~~~~~~~~~~~--------~~-~~~~~~~~~d~~~l~~~~-----~~~~~~ 335 (492) +.......... ...+.+++... +.+....++..+. .. .++.++++.+.+.++... ....+. T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~ 247 (376) T protein:vir:78 168 LFGKMIRAQMRNFQIRGAVNFKMAGVADKDKQTKLQEYIDKVYASFNNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVK 247 (376) T ss_pred HHHHHHHHHHhcCCCceeEEEccCCCCCHHHHHHHHHHHHHHhccccccCcceEEcCCCceEEeeccCccccchhHHHHH Confidence 33333332222 22333433221 1111111222111 11 123344454444443221 112445 Q ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcceeeeE Q lcl|Aclame:pro 336 KYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---KGEHKDVDI 412 (492) Q Consensus 336 ~~i~~l~~~i~~~a~~p~~~~~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~i 412 (492) +..+..+..|+..=++|..-.....++.+...+.+ +..++.-.++.+...++. ......+.. T Consensus 248 e~~~~~~~~Ia~~fgVPp~~l~~~~s~~e~~~~~f---------------~~~~l~P~~~~ie~~l~~kll~~~~~~~~~ 312 (376) T protein:vir:78 248 KLRKEMIDYVASILGIPSSLLHGDMADLSNNMKAY---------------MEYCIDPLTKKLEDELNAKLFTFSEFLAGE 312 (376) T ss_pred HHHHHHHHHHHHHhCCCHHHhCCCCCCHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhhCCcccceecc Confidence 55566666777777777654322112223222222 222222222222221111 111122233 Q ss_pred EeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHhhccccCCCCCCCCcCCCCCC Q lcl|Aclame:pro 413 SFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFV--EDLQAELERIEQEQTEYNKQLPNLDDGGADSAQQQERSNN 488 (492) Q Consensus 413 ~f~~~~p~d~~e~~~~~~k~~--g~vs~et~l~~l~~v--~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (492) .+...+-.|..+.++++.++. |+++.-.+++.++.- ++.. .++.- ......+...+ ++ T Consensus 313 ~~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~--~d~~~-----~~~n~~~~~~~-----------~e 374 (376) T protein:vir:78 313 HIKIIHKKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPE--LDKYL-----ITKNYQSADEG-----------GE 374 (376) T ss_pred cchhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC--Cceee-----eccCceehhcc-----------cc Confidence 334445568888999988774 788888888776532 1110 00000 00000111111 11 Q ss_pred CC Q lcl|Aclame:pro 489 KE 490 (492) Q Consensus 489 ~~ 490 (492) ++ T Consensus 375 ~g 376 (376) T protein:vir:78 375 DG 376 (376) T ss_pred CC Confidence 11 No 267 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=36.40 E-value=1.2 Score=20.20 Aligned_cols=283 Identities=11% Similarity=0.102 Sum_probs=95.6 Q ss_pred cCCCcccccccccccc-----------ccccccccccccccchHHHHHHHHHHhhhcCCeeecC------Cc----hhHH Q lcl|Aclame:pro 71 EQRPDIVKEPKPVDAT-----------GAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKH------TD----DEVV 129 (492) Q Consensus 71 ~G~~~i~~~~~~~~~~-----------~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~~~------~d----~~~~ 129 (492) ..++. +++...... +..++.. +.+-..++.... ..+..+--|+.+.+ .+ .... T Consensus 1 m~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~---~~~~~~~pp~~~~~la~l~~a~~~h~s~i~ 74 (340) T protein:vir:98 1 MSKRK--PRKAVAMTASAPQKMEAFTFGEPVPVL-DKRDILDYVECI---SNGKWYEPPVSFSGLAKSLRSAVHHSSPIY 74 (340) T ss_pred CCCCC--CCccccccccCccceeEEEcCCceeec-Ccchhhhhhhhh---hcCceecCCCCHHHHHHHHHhccccchhhh Confidence 11110 000000000 0000000 000000111000 00000101221110 00 0000 Q ss_pred HHHH----HHHhcc-H-HHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEEEEeeeecc Q lcl|Aclame:pro 130 KRID----EVLGNR-F-DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLEN 202 (492) Q Consensus 130 ~~l~----~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~ 202 (492) ...+ .+.-|. + ...+.+++.+.+.+|.||+.+-++..|++ .+..++|..+-...+ +.. +|.... T Consensus 75 ~k~n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~----~~~-----~~~~~~ 145 (340) T protein:vir:98 75 VKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD----DSV-----FWFVEN 145 (340) T ss_pred hhhhHHhhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEccc----CcE-----EEEEec Confidence 0001 111232 1 13345677888999999999999888875 344444443322111 000 111000 Q ss_pred ceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 ETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRLS 277 (492) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~liD~~~~~~s 277 (492) ... .+.+. -+. |+++++ ...|.|++...+.-++. +.... T Consensus 146 ~~~----------~~~~~-----------------------~~e--ViHir~~~~~~~~~Gls~~~~a~~si~l-~~aa~ 189 (340) T protein:vir:98 146 FTQ----------PHEFA-----------------------PDT--VFHLLEPDINQEIYGLPEYLSALNSAWL-NESAT 189 (340) T ss_pred CCe----------EEEEc-----------------------ccc--EEEEcCCCCCCCcccccHHHHHHHHHHH-HHHHH Confidence 000 00000 011 233321 12466666554433332 22222 Q ss_pred HH-HHHHHhcCCc--eEEEecC--CcccchhhHHhhhh-------ccceecCCC---Ccceeee--cccCHHHHHHHHHH Q lcl|Aclame:pro 278 DL-SNTFKDSNEL--TYVLKNY--DDQELPEFKRLLRY-------YGAIKVSDN---GGVDTIQ--VEVPVENSKKYLDE 340 (492) Q Consensus 278 ~~-~~~~~~~~~~--~l~~~g~--~~~~~~~~~~~~~~-------~~~~~~~~~---~d~~~l~--~~~~~~~~~~~i~~ 340 (492) .+ ...+...+.| ++.+.|. +.+..+.++..++. .+++.+..+ +++++.- .......+.+..+. T Consensus 190 ~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~ 269 (340) T protein:vir:98 190 LFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKA 269 (340) T ss_pred HHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHh Confidence 22 2223333334 4445553 22222333333322 123333322 2344443 33344557777788 Q ss_pred HHHHHHHHhCCCCCCcccc----c--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeeeEEe Q lcl|Aclame:pro 341 LYQKIMLFGQAVDFSSDKF----G--SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISF 414 (492) Q Consensus 341 l~~~i~~~a~~p~~~~~~~----~--~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~i~i~f 414 (492) .+..|+..=++|..-.+-. + ++....+..+....+.-.++. | +++. ..++.+ -+.| T Consensus 270 ~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~----i----ee~n----~~L~~e------~~rF 331 (340) T protein:vir:98 270 SAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDR----F----REVN----DWLGME------VIRF 331 (340) T ss_pred hHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHH----H----HHHH----hccccc------cccc Confidence 8888988888886533221 1 223322222222222111111 1 1111 122211 1345 Q ss_pred CCC-CCcCH Q lcl|Aclame:pro 415 NYN-KVANT 422 (492) Q Consensus 415 ~~~-~p~d~ 422 (492) ++. +.+.. T Consensus 332 ~~~~l~~~d 340 (340) T protein:vir:98 332 KEYTLDNPE 340 (340) T ss_pred CccccccCC Confidence 333 22222 No 268 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=33.50 E-value=1.4 Score=19.87 Aligned_cols=282 Identities=7% Similarity=0.058 Sum_probs=102.6 Q ss_pred HHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHHhhhcCC-------------------------e Q lcl|Aclame:pro 65 IGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKP-------------------------I 119 (492) Q Consensus 65 ~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~-------------------------~ 119 (492) +-++-+...+.-...+..... .+. ......|.||+| + T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~------~~~------------~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~ 62 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAG------SAA------------PARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPV 62 (351) T ss_pred CCCCCCCCCCCCCCCCchhhh------hcc------------cceeEEEEcCCceeecCcchhhhhhhhhccCceecCCC Confidence 111111111100000000000 000 001112222332 2 Q ss_pred eecC------CchhHHHHH--------HHHHhcc-H-HHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEE Q lcl|Aclame:pro 120 AFKH------TDDEVVKRI--------DEVLGNR-F-DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPI 182 (492) Q Consensus 120 ~~~~------~d~~~~~~l--------~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i 182 (492) .+.+ .+.-....+ ..+.-|. + ...+.+++.+.+.+|.||+.+-++..|++ .+..++|..+.+. T Consensus 63 ~~~~la~~~~~~~~h~~~l~~k~n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~ 142 (351) T protein:vir:78 63 SFAGLAKSFRASTHHSSALFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRK 142 (351) T ss_pred CHHHHHHHHhhhHhhhhhhhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCcceEEe Confidence 1110 000000000 1111232 1 22356778889999999999999988865 4555666555443 Q ss_pred ecCCCCCceEEEEEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccC Q lcl|Aclame:pro 183 WTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDL 257 (492) Q Consensus 183 ~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~ 257 (492) .++. ++|....... .+.+.. + -|+++.+ ... T Consensus 143 ~~~~---------~~~~~~~~~~----------~~~~~~-----------------------~--eVihir~~~~~~~~y 178 (351) T protein:vir:78 143 ADFS---------GFVYVNGWQE----------RHEFAP-----------------------D--SVFQLVRPDINQEVY 178 (351) T ss_pred eeCC---------eEEEEecCCe----------EEEEcc-----------------------c--cEEEEcCCCCCCCcc Confidence 2211 0110000000 000000 0 1233321 224 Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE--EecC--CcccchhhHHhhhh-------ccceecCCC---Ccce Q lcl|Aclame:pro 258 EISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYV--LKNY--DDQELPEFKRLLRY-------YGAIKVSDN---GGVD 323 (492) Q Consensus 258 ~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l~--~~g~--~~~~~~~~~~~~~~-------~~~~~~~~~---~d~~ 323 (492) |.|++...+.-+..-+.+..-..+.+...+.|-.+ +.|. +.+..+.++..++. ..++.+..+ ++++ T Consensus 179 Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl~~~~~~ls~e~~~~lr~~~~~~~G~~N~~~~~v~~~~g~~~g~k 258 (351) T protein:vir:78 179 GLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQ 258 (351) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcccccceeeecCCCCcccee Confidence 67777655544443333222223333444444443 4443 22323333333322 123333222 3345 Q ss_pred eee--cccCHHHHHHHHHHHHHHHHHHhCCCCCCccc----cc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 TIQ--VEVPVENSKKYLDELYQKIMLFGQAVDFSSDK----FG--SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLW 395 (492) Q Consensus 324 ~l~--~~~~~~~~~~~i~~l~~~i~~~a~~p~~~~~~----~~--~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~ 395 (492) +.. .......+.+..+..+..|+..=++|..-.+- .+ ++....+..+....+.-.+.. |. ++. T Consensus 259 ~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~----ie----e~n- 329 (351) T protein:vir:78 259 LIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQAR----FA----ELN- 329 (351) T ss_pred EEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHH----HH----HHH- Confidence 443 22334456677777788888888888643321 11 223322332322222222221 11 111 Q ss_pred HHHHHhccCCcceeeeEEeCCCCCcCHHHHH Q lcl|Aclame:pro 396 FVFEHFDIKGEHKDVDISFNYNKVANTELQV 426 (492) Q Consensus 396 li~~~~~~~~~~~~i~i~f~~~~p~d~~e~~ 426 (492) ..++.. -+.|++..-....+.+ T Consensus 330 ---~~l~~~------~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 330 ---DWLGDE------VVRFDDYEIPPAPVAA 351 (351) T ss_pred ---hhcCcc------ceecChhhhccccccC Confidence 122221 1456443222122212 No 269 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=30.03 E-value=1.6 Score=19.45 Aligned_cols=426 Identities=14% Similarity=0.121 Sum_probs=165.6 Q ss_pred ChhhhHHHHHHHHHhcCCceecc----------CCCcHHHHHHHHhhcCCChhhHHHHHHHH-------HHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILYP----------SQPTQTEIFDAIVRTNNKPETLEEMIVRY-------IKQHLEKLPEI 63 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------i~~~~~~~~~~ 63 (492) +-|-.+++++ |.|.+.....+. .+|+..+=.-.+....+. -...-....+ ++...+-+.+| T Consensus 4 ~~~~~~l~~~-~~~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~-~~~~g~~~~~y~~~e~~~~~~~eLI~~Y 81 (524) T protein:vir:98 4 LGFGNVLSFF-KNFAREDEIELEQQLKNDTGSVAPPKNNDGAYEIETDLNN-QKYAGVFQQFYSGQDPAIQNKEQLINTY 81 (524) T ss_pred cchhhHHHHh-hhhhhhhhhhHhhhhcCCcccccCCCCCCCceeecCCCCc-ceecceeeeeccccccccchHHHHHHHH Confidence 3333333332 444443322221 001000000000000000 0000000000 01111222333 Q ss_pred HHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHH-HHhhhcCCeeecCCchhHHHH--------HHH Q lcl|Aclame:pro 64 SIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQK-VSYIVGKPIAFKHTDDEVVKR--------IDE 134 (492) Q Consensus 64 ~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~-~~~l~g~~~~~~~~d~~~~~~--------l~~ 134 (492) +.+..+++-+.. ...||+.. +.--...|+.+..++.+..+. .+. T Consensus 82 R~ma~~pEvd~A---------------------------v~eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~ 134 (524) T protein:vir:98 82 RGIMSYPEVENA---------------------------VSEIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDN 134 (524) T ss_pred HHHhhccchhhH---------------------------HHhhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHH Confidence 333333332221 11122211 112234566665544332222 222 Q ss_pred HHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC---CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEe Q lcl|Aclame:pro 135 VLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE---EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWD 210 (492) Q Consensus 135 ~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~---~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~ 210 (492) +.. =+|+....+..|.+.+.|+.|.+.-.|+ +|-..+..++|+.+-.|..- ....+..+++.+. T Consensus 135 Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~~~kGI~ELr~lDPr~i~~vr~~-~~~~~~~~~~v~~----------- 202 (524) T protein:vir:98 135 VLNIYDFDNMGARLFRDWYVDSRIYFHKIMHKDESKGIRELRQLDPRCMELIRES-ITETLDGGVKVFR----------- 202 (524) T ss_pred HHHHhccchhhhHHHhhhhhcceeEEEEEEcCCCCcceeeeeeeCCccceeeeec-cccccccchhhcc----------- Confidence 221 2778888999999999999999987664 35567888999998766432 1111111221111 Q ss_pred cceEEEEEEecceeeeccccccccccccceeccCCccce--EeecCc---cCCCCcHHHHHHHHHHHHHH--HHHHHHHH Q lcl|Aclame:pro 211 KVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFKNN---DLEISDIFMYKTLIDAYNRR--LSDLSNTF 283 (492) Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~nn---~~~~s~~~~v~~liD~~~~~--~s~~~~~~ 283 (492) ....+|.+........... ... .++.-=+||- |.|... +.+.+.+.-+...+..+|++ +-|.+-.- T Consensus 203 -~~~e~f~Y~~~~~~~~~~g--~~~----~~~~~ikI~~dAIvy~hSGL~d~~~~iisyLhkAiKp~NQLkm~EDAlVIY 275 (524) T protein:vir:98 203 -GYREFFVYSAPKAGYTYNG--QIY----QANQKIKIPRSAIVYAHSGLEDCSNNIIGYLHRAVKPANQLRLLEDAMVIY 275 (524) T ss_pred -ceeeeeeeccCCCcccccc--cee----cCCCceeechhheeeeccCcccCCCCeeeehhHhhHhHHhhHHHHhhHHHH Confidence 0111222211111000000 000 0000001111 111110 01111222233444444433 34444444 Q ss_pred HhcCCceEEEecCCcccchhhH-----Hh----hhhccc--------------eec--------CCCCc-ceeeecccCH Q lcl|Aclame:pro 284 KDSNELTYVLKNYDDQELPEFK-----RL----LRYYGA--------------IKV--------SDNGG-VDTIQVEVPV 331 (492) Q Consensus 284 ~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~--------------~~~--------~~~~d-~~~l~~~~~~ 331 (492) +....|-.=+.-.+..+.++.+ +. .++..+ +.+ -+||. .+.-|.+... T Consensus 276 RitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGevrddrk~msMlEDyWLpRReGgrgTEItTLpggq 355 (524) T protein:vir:98 276 RITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYDARTGTVKNQQNNLSMTEDYWLMRRDGKAITEVSTLPGGQ 355 (524) T ss_pred hhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccCceeeccccccchhhhhcccccCCCCccceeeccccC Confidence 5555554333222222222211 11 110000 000 11222 2222333221 Q ss_pred -HHHHHHHHHHHHHHHHHhCCCCCCc--c--ccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC- Q lcl|Aclame:pro 332 -ENSKKYLDELYQKIMLFGQAVDFSS--D--KFG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK- 404 (492) Q Consensus 332 -~~~~~~i~~l~~~i~~~a~~p~~~~--~--~~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~- 404 (492) -+...-+.-+++.++..-++|---. + +|. |. |..|-.-+.....-+.+.+..|..-+.++++.=+-+-|+- T Consensus 356 nlgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr--~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit 433 (524) T protein:vir:98 356 NFSDMDDIKWFNRKLYEALRVPLSRMPRDDGGMQIGG--GGEITRDELKFSKFIRTLQIQFSPVLSDPLKTNLIAKKIIT 433 (524) T ss_pred CcChHHHHHHHHHHHHHHhCCCceeccCCCCcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC Confidence 2344556777788888777774211 1 121 12 2244444444555667777788888877776654444432 Q ss_pred -Ccc----eeeeEEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhCCCCCC--HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 405 -GEH----KDVDISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENHPFVED--LQAELERIEQEQTEYN 466 (492) Q Consensus 405 -~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l~~v~D--~~~E~~ri~~E~~~~~ 466 (492) .+| ..|.+.|...-.-.+...++ ++..+ +| .+|.+++.+.+=-.+| ..++.+.|++|..+. T Consensus 434 ~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDeei~~~~k~I~~E~k~~- 512 (524) T protein:vir:98 434 EDEWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVEGVVGKYVSHKYIMKEILRMSDEDIDEQAKLIEEESKEE- 512 (524) T ss_pred HHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHhccCHHHHHHHHHHHHHHHhCC- Confidence 222 35778886555444444333 33333 24 5899999986533333 334444444443221 Q ss_pred HhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 467 KQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) -..++ ++++.| T Consensus 513 --------~~~~p-------~~e~~~ 523 (524) T protein:vir:98 513 --------RFKNP-------EAEEEN 523 (524) T ss_pred --------CCcCC-------cccccc Confidence 00111 111111 No 270 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=29.64 E-value=1.6 Score=19.40 Aligned_cols=413 Identities=10% Similarity=0.098 Sum_probs=163.7 Q ss_pred ChhhhHHHH--HHHHHhc-----------CCceeccCCC-----cHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQ--VAQALIK-----------GGNILYPSQP-----TQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPE 62 (492) Q Consensus 1 ~~~~~~~~~--~~~~~~~-----------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 62 (492) |+|.+-... .-+...+ ++-.+...+. +....... ..+.+.. ++...+-+.+ T Consensus 8 ~~~~~~~d~~~~~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~--~~~~e~~---------~~~~~eLI~~ 76 (521) T protein:vir:65 8 LARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQ--FYSTDQK---------ISTTKQLVNT 76 (521) T ss_pred hhhccCchhhHHHhhhccCCCcccCCCCCCCceeecccCCccccccccceee--eccccch---------hhhHHHHHHH Confidence 333221111 1111111 1111111000 00000000 0011100 0111222334 Q ss_pred HHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHHH--------HH Q lcl|Aclame:pro 63 ISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVKR--------ID 133 (492) Q Consensus 63 ~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~~--------l~ 133 (492) |+.+..+++-+..+ ..||+. .+.--..+|+.+..++.+..+. .+ T Consensus 77 YR~ma~~pEvd~Av---------------------------~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~ 129 (521) T protein:vir:65 77 YRGLMNNHEVENAV---------------------------QNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFK 129 (521) T ss_pred HHHHhhccchhhHH---------------------------HHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHH Confidence 44444444333211 112221 1111234555555443322222 22 Q ss_pred HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC---CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEE Q lcl|Aclame:pro 134 EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE---EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYW 209 (492) Q Consensus 134 ~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~---~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~ 209 (492) .+.. =+|+....+..|.+.+.|+.|.+.-.|+ +|-..+..++|+.+..+...... +...++++ T Consensus 130 ~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~pk~GI~ELr~lDPr~i~~vr~i~k~-------------~~~~~~v~ 196 (521) T protein:vir:65 130 DLLNTIQFDRRGQDMFRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPRNLEYVREIITE-------------DTPEGKIY 196 (521) T ss_pred HHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCccccceeeeeeCCcceeeeeeeccc-------------ccCCccee Confidence 2221 2778888999999999999999987654 35567899999998876542211 11111111 Q ss_pred ecceEEEEEEecceeeeccccccccccccceeccCCccce--Eeec-------CccCCCCcHHHHHHHHHHHHHH--HHH Q lcl|Aclame:pro 210 DKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFK-------NNDLEISDIFMYKTLIDAYNRR--LSD 278 (492) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~-------nn~~~~s~~~~v~~liD~~~~~--~s~ 278 (492) . ....+|.+..+......... .. .++.-=+||- |.|. ++..-.|-++ ..+..+|++ +-| T Consensus 197 ~-~~~e~f~Y~~~~~~~~~~g~--~~----~~~~~vkI~~dAI~y~hSGl~d~~~~~i~syLh---kAiKp~NQLkm~ED 266 (521) T protein:vir:65 197 K-ATKEYFIYTVGNSSYCAGGQ--VF----SPNSRVKIPRSAITYAHSGLMDCDDKYIIGYLH---RAVKPANQLKLLED 266 (521) T ss_pred c-ceeeeeeeecCCcceeccce--ee----cCCcceeechhheeeeeccceeCCCCeeeecch---hhhHhHHhhHHHHh Confidence 1 11112222111111000000 00 0000001111 1121 1111223343 333344432 344 Q ss_pred HHHHHHhcCCceEEEecCCcccchhhH-----Hh----hhhccc--------------eec--------CCCCc-ceeee Q lcl|Aclame:pro 279 LSNTFKDSNELTYVLKNYDDQELPEFK-----RL----LRYYGA--------------IKV--------SDNGG-VDTIQ 326 (492) Q Consensus 279 ~~~~~~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~--------------~~~--------~~~~d-~~~l~ 326 (492) .+-.-+....|-.=+.-.+..+.++.+ +. .++..+ +.+ -+||. .+.-| T Consensus 267 AlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItT 346 (521) T protein:vir:65 267 AMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLKNQQANLSMTEDYWLQRRDGKAITDVTT 346 (521) T ss_pred hHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccccccccccchhhhhcccccCCCCccceee Confidence 444445555554332221222222111 11 111000 000 11222 22223 Q ss_pred ccc-CHHHHHHHHHHHHHHHHHHhCCCCCC--ccc---cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 327 VEV-PVENSKKYLDELYQKIMLFGQAVDFS--SDK---FG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFE 399 (492) Q Consensus 327 ~~~-~~~~~~~~i~~l~~~i~~~a~~p~~~--~~~---~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~ 399 (492) .+. +--+...-+.-+++.++..-++|--- .+. +. |.. ..|-.-+.....-+.+.+..|..-+.++++.=+- T Consensus 347 LpGgqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~--~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLi 424 (521) T protein:vir:65 347 LPGASGMSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDG--SEITRDELEFSKFIRTLQSQFSEVLRDPLKYNLI 424 (521) T ss_pred cccCCCcChHHHHHHHHHHHHHHhCCCceeccCCCCcceecccc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 332 22234445677788888877777422 222 11 222 2343444445556677777888888877766544 Q ss_pred HhccC--Ccc----eeeeEEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHHH Q lcl|Aclame:pro 400 HFDIK--GEH----KDVDISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIEQ 460 (492) Q Consensus 400 ~~~~~--~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~~ 460 (492) +-|+- .+| ..|.+.|...-.-.+...++ ++..+ +| .+|.+++.+.+ -.++ +..++.++|++ T Consensus 425 lKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~S~dyi~k~ILr~tDeei~~~~k~I~~ 504 (521) T protein:vir:65 425 LKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQMDTEKKQIEE 504 (521) T ss_pred hhcCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHH Confidence 44432 222 35778886555444444333 33333 24 47999999864 3332 24555566666 Q ss_pred HHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 461 EQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 461 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) |..+..-.- .++++.+ T Consensus 505 E~~~~~~~~----------------p~~~~~~ 520 (521) T protein:vir:65 505 EANDPRFKQ----------------TPDEIED 520 (521) T ss_pred hhhCCCCCC----------------CcccccC Confidence 654321110 0011111 No 271 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=28.84 E-value=1.7 Score=19.30 Aligned_cols=295 Identities=11% Similarity=0.048 Sum_probs=101.0 Q ss_pred HHHHHHHhcCCCc-cccc---ccccc--ccc-ccccccc----ccccccchHHHHHHHHHHhhhcCCeeecC------Cc Q lcl|Aclame:pro 63 ISIGQEYYEQRPD-IVKE---PKPVD--ATG-AVDPLKP----DDRMITNFHANLVDQKVSYIVGKPIAFKH------TD 125 (492) Q Consensus 63 ~~~~~~YY~G~~~-i~~~---~~~~~--~~~-~~~~~~~----~~ri~~n~~~~ivd~~~~~l~g~~~~~~~------~d 125 (492) +.+.++.-..... .+.. ..... ... ...-..| +.+=+.+|.... ..+....-|+.+.+ .+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~---~~~~~~~pp~~~~~la~~~~~~ 77 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECW---PNGRWYEPPLSMEGLAKSVGSS 77 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHh---hcCccccCCCCHHHHHHHHhhh Confidence 1111110000000 0000 00000 000 0000000 000001111110 00111111222211 00 Q ss_pred hh----HH----HHHHHHHhcc-H-HHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEecCCCCCceEEE Q lcl|Aclame:pro 126 DE----VV----KRIDEVLGNR-F-DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAF 194 (492) Q Consensus 126 ~~----~~----~~l~~~~~n~-~-~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~ 194 (492) .. .. -+...+.-|. + ...+.+++.+.+.+|.||+.+.++..|++ .+..++|..+-+.-+. .. T Consensus 78 ~~h~~~l~~k~n~l~~~~~Pn~~~t~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~~~----~~--- 150 (350) T protein:vir:11 78 VYLQSGLKFKRNMLAKTFIPHRLLSRATFEQFSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDL----ET--- 150 (350) T ss_pred hhhccchhhhhhhhhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeeecC----Ce--- Confidence 00 00 0001122232 2 22356778888999999999999988875 4566666554332211 00 Q ss_pred EEeeeeccceeEEEEecceEEEEEEecceeeeccccccccccccceeccCCccceEeecC-----ccCCCCcHHHHHHHH Q lcl|Aclame:pro 195 IRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLI 269 (492) Q Consensus 195 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~~~s~~~~v~~li 269 (492) +|....... .+.+.. + -|+++.+ ...|.|.+...+..+ T Consensus 151 --~~~~~~~~~----------~~~~~~-----------------------~--eVihir~~~~~~~~yGls~~~~a~~si 193 (350) T protein:vir:11 151 --FYQVRSWKD----------EHEFEK-----------------------G--SVIQLREADINQEIYGVPEWFCALQSA 193 (350) T ss_pred --EEEEeeCCe----------EEEECc-----------------------c--cEEEeCCCCCCCCcccccHHHHHHHHH Confidence 111000000 000000 0 1233321 124677776544444 Q ss_pred HHHHHHHHHHHHHHHhcCCce--EEEecC--CcccchhhHHhhhh-------ccceecCCC---Ccceeeec--ccCHHH Q lcl|Aclame:pro 270 DAYNRRLSDLSNTFKDSNELT--YVLKNY--DDQELPEFKRLLRY-------YGAIKVSDN---GGVDTIQV--EVPVEN 333 (492) Q Consensus 270 D~~~~~~s~~~~~~~~~~~~~--l~~~g~--~~~~~~~~~~~~~~-------~~~~~~~~~---~d~~~l~~--~~~~~~ 333 (492) ..-+.+..-....+...+.|- +.+.|. +.++.+.++..++. +.++.+..+ +++++... ...... T Consensus 194 ~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~e~~~~l~~~~~~~~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~q 273 (350) T protein:vir:11 194 LLNESATLFRRKYYNNGSHAGFILYMTDAAQNEEDIDALRTALKTAKGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDE 273 (350) T ss_pred HHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeeecCCCCccceEEEEcCCChhHHH Confidence 332222222223333344443 444453 22333333333322 122333322 23455432 223445 Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcc----ccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Q lcl|Aclame:pro 334 SKKYLDELYQKIMLFGQAVDFSSD----KFG--SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEH 407 (492) Q Consensus 334 ~~~~i~~l~~~i~~~a~~p~~~~~----~~~--~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~ 407 (492) +.+..+..++.|+..=++|..-.+ +.+ ++....+..+....+.-.+.. | +++.+ .++.. T Consensus 274 f~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~L~P~~~~----i----e~ln~----~l~~~--- 338 (350) T protein:vir:11 274 FGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLELAPMQTR----L----QQVNE----MIGEE--- 338 (350) T ss_pred HHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHHHHHHHHH----H----HHHHh----hcCcc--- Confidence 677777788888888888854332 111 233333333322222222221 1 11221 22211 Q ss_pred eeeeEEeCCCCCcCH Q lcl|Aclame:pro 408 KDVDISFNYNKVANT 422 (492) Q Consensus 408 ~~i~i~f~~~~p~d~ 422 (492) .+.|.+....++ T Consensus 339 ---~~~F~~~~~~~l 350 (350) T protein:vir:11 339 ---VVRFAQFDAPGL 350 (350) T ss_pred ---ccccCcccccCC Confidence 123433322222 No 272 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=25.44 E-value=2.1 Score=18.87 Aligned_cols=366 Identities=10% Similarity=0.001 Sum_probs=143.3 Q ss_pred ccccccccccc--cccccccc---ccccccchHHHHHHHHHHhhhcCCeeecCCchh---HHHHHHHHHh--c---cHHH Q lcl|Aclame:pro 76 IVKEPKPVDAT--GAVDPLKP---DDRMITNFHANLVDQKVSYIVGKPIAFKHTDDE---VVKRIDEVLG--N---RFDD 142 (492) Q Consensus 76 i~~~~~~~~~~--~~~~~~~~---~~ri~~n~~~~ivd~~~~~l~g~~~~~~~~d~~---~~~~l~~~~~--n---~~~~ 142 (492) +-..+...... ........ ..-..++.....|+.+++-+-+-|+.+--.+.+ .......+.. | .... T Consensus 1 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~~~~~~~~l~~lL~~~PN~~~t~~~ 80 (723) T protein:vir:94 1 MTTFPSGAGGWNAWSADSVFGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPDGELDELHPLSQLWNVMPNRAMPAQV 80 (723) T ss_pred CcccccCCCccccccccccccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCCCccchhhHHHHHHhhCCCCCCCHHH Confidence 11111000000 00000000 000112333445666666666667765332221 1223333432 3 2344 Q ss_pred HHHHHHHHHHhcCeEEEEEEeCC---CCce-EEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceEEEEE Q lcl|Aclame:pro 143 KLHSVLTGASNKGIEWLHPYLDE---EGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYV 218 (492) Q Consensus 143 ~~~~~~~~~~~~G~~~~~v~~d~---~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 218 (492) +...+..+++.+|.+|+.+.++. .|.+ .+..++|..+.++..+....... .....|. T Consensus 81 f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~-------------------~~~~~y~ 141 (723) T protein:vir:94 81 LKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQ-------------------AQIIGYV 141 (723) T ss_pred HHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCcccee-------------------eeeeEEE Confidence 55666778899999999987643 3443 35556665554443322111000 0001111 Q ss_pred Ee--cceeeeccccccccccccceeccCCccceEeec-----CccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCceE Q lcl|Aclame:pro 219 YE--NGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFK-----NNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTY 291 (492) Q Consensus 219 ~~--~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~-----nn~~~~s~~~~v~~liD~~~~~~s~~~~~~~~~~~~~l 291 (492) +. .+.... .+-. -|++++ +...|.|.+......+.....+..-..+.+...+.|-. T Consensus 142 ~~~~~G~~~~---------------~~~~--dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~g 204 (723) T protein:vir:94 142 IERTDGVRVP---------------VLAD--EMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGG 204 (723) T ss_pred EEecCceeEE---------------eccc--ceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcce Confidence 10 010000 0000 123332 22357777776666665544444444445555556655 Q ss_pred EEec--CCcccchhhHHhhh--------hccceecCC--------CCcceeeecccCH--HHHHHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 292 VLKN--YDDQELPEFKRLLR--------YYGAIKVSD--------NGGVDTIQVEVPV--ENSKKYLDELYQKIMLFGQA 351 (492) Q Consensus 292 ~~~g--~~~~~~~~~~~~~~--------~~~~~~~~~--------~~d~~~l~~~~~~--~~~~~~i~~l~~~i~~~a~~ 351 (492) ++.- .+.+...+++..+. .++++.++. +.+++|.....+. ..+.+..+..+..|+..=++ T Consensus 205 iL~~~~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgV 284 (723) T protein:vir:94 205 VVNLGDMDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGI 284 (723) T ss_pred EEEcCCCCHHHHHHHHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCC Confidence 5542 22222222222221 123344432 1234554444433 33445555666677777778 Q ss_pred CCCCccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCcceeeeEEeCC--CCCcCHHH Q lcl|Aclame:pro 352 VDFSSDKFG--SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---KGEHKDVDISFNY--NKVANTEL 424 (492) Q Consensus 352 p~~~~~~~~--~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~---~~~~~~i~i~f~~--~~p~d~~e 424 (492) |..-....+ +|.....+.+. ..+|.-.++.+...++. ......+.+.|+. .+..|..+ T Consensus 285 Pp~~i~~~st~sN~e~~~~~f~---------------~~tL~P~~~~ie~~ln~~Ll~~~g~~~~~~f~~~~lLr~D~~~ 349 (723) T protein:vir:94 285 RKDALLGGSTYENQAEAKAAVW---------------TETLIPQMEVMASITDLQLLPDIGWTVEWDFNSVPALQEDLEA 349 (723) T ss_pred ChhHcCCCCCcccHHHHHHHHH---------------HHHHHHHHHHHHHHHhHhhcccccCceEEeecchhhhhcCHHH Confidence 754332211 12211111111 11122222222111110 1112346677764 35678888 Q ss_pred HHHHHHHH--hccCChHHHHHhCCC--CCCHHHHH--H-------------HHHHHHHHHH-HhhccccCCCCCCC---C Q lcl|Aclame:pro 425 QVQTAQQS--MGIVSHETVLENHPF--VEDLQAEL--E-------------RIEQEQTEYN-KQLPNLDDGGADSA---Q 481 (492) Q Consensus 425 ~~~~~~k~--~g~vs~et~l~~l~~--v~D~~~E~--~-------------ri~~E~~~~~-~~~~~~~~~~~~~~---~ 481 (492) .++.+.++ .|+++.-.+.+.++. +++-+..+ . --.+|.+..+ ..+.....+.+..+ . T Consensus 350 r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~~~~~~p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~~~~~ 429 (723) T protein:vir:94 350 QAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIGQMTLTPYRAQFAPAPAPAPAVEEGAARMLALLERVAADRPLPELPVR 429 (723) T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceeccccccccCCCCCCccchhhhHhhhhhccccccccCcCCCCCC Confidence 89888876 478998888876643 22111110 0 0001111000 00010010111110 0 Q ss_pred c-----CCCCCCCCCC Q lcl|Aclame:pro 482 Q-----QERSNNKESE 492 (492) Q Consensus 482 ~-----~~~~~~~~~e 492 (492) . .+.+.+.+.+ T Consensus 430 ~~~~~~~~~~~~~~~~ 445 (723) T protein:vir:94 430 ATTVLHHDPGPDPQQT 445 (723) T ss_pred CCCCCCCCcccCCchh Confidence 0 0111111111 No 273 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=24.49 E-value=2.2 Score=18.74 Aligned_cols=426 Identities=15% Similarity=0.133 Sum_probs=167.9 Q ss_pred ChhhhHHHHHHHHHhcCCceec----------cCCCcHHHHHHHHhhcCCCh----hhH-HHHHHHH---HHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNILY----------PSQPTQTEIFDAIVRTNNKP----ETL-EEMIVRY---IKQHLEKLPE 62 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~----~~~-~~~l~~~---i~~~~~~~~~ 62 (492) |.-..-++++-+-|.|.....| ...|...+=. ..+..... ... +++.... ++...+-+.+ T Consensus 1 ~~~~~~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa--~~I~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~ 78 (524) T protein:vir:10 1 MANFNTILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGA--REIETQEQNIPYNALMQQMFGSNEPEVKNTRELIDT 78 (524) T ss_pred CCchhhHHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCc--eeeccCcccccchhhhhhhhhcccchhhhHHHHHHH Confidence 4333334444444443222211 1111100000 00000000 000 0011101 1111222334 Q ss_pred HHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHH--------HHH Q lcl|Aclame:pro 63 ISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVK--------RID 133 (492) Q Consensus 63 ~~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~--------~l~ 133 (492) |+.+..+++-+.. ...||+. .+.--...|+.+..++.+..+ ..+ T Consensus 79 YR~ma~~pEvd~A---------------------------v~eIVneaiv~d~~~~pV~l~Ld~~~~s~siK~kI~eeF~ 131 (524) T protein:vir:10 79 YRNLMNNYEVDNA---------------------------VQEIVSDAIVYEDDKEVVALNLDGTDFSQSIKDKILAEFS 131 (524) T ss_pred HHHHhhccchhhH---------------------------HHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHH Confidence 4444333333221 1112221 111123455666544333222 222 Q ss_pred HHHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC----CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEE Q lcl|Aclame:pro 134 EVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE----EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEY 208 (492) Q Consensus 134 ~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~----~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~ 208 (492) .+.. =+|+....+..|.+.+.|+.|.+.-.|. +|-..+..++|+.+-.|..- ..+....+++ T Consensus 132 ~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i-------------~~~~~~~~~v 198 (524) T protein:vir:10 132 EVLNLLNFQRKGTDHFQRWYVDSRIFFHKIINPKKMKDGVQELRRLDPRQVQYIREI-------------VTRMEDGVKI 198 (524) T ss_pred HHHHHhccchhhhHHHhhheeeceEEEEEEeeCCCccccceeeeeeCCccceeeeee-------------cccCcccchh Confidence 2221 2778888999999999999999986653 46677889999888655431 1111111222 Q ss_pred EecceEEEEEEecceeeeccccccccccccceeccCCccce--EeecCcc----CCCCcHHHHHHHHHHHHHH--HHHHH Q lcl|Aclame:pro 209 WDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFKNND----LEISDIFMYKTLIDAYNRR--LSDLS 280 (492) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~nn~----~~~s~~~~v~~liD~~~~~--~s~~~ 280 (492) .+.. ..+|.+..+........ .. ..++.-=+||- |.|...- .+.-.+.-+...+..+|++ +-|.+ T Consensus 199 i~~~-~e~f~Y~~~~~~~~~~~--~~----~~~~~~ikI~~dAIvy~~SGL~d~~~~~i~syLhkAiKp~NQLkm~EDAl 271 (524) T protein:vir:10 199 VDGY-REFFVYDTGHESYCADG--RI----YSAGTKVKIPRAAVVYAHSGLLDCCGKNIIGYLQRAIKPANQLKLMEDAM 271 (524) T ss_pred hcch-hhheeecCCCcccccCc--ce----ecCCcceecchhheeeeccCcccCCCCceeccchHhhHHHHhhHHHHhhH Confidence 1111 12222222111000000 00 00000001221 1121110 1111122233334444432 33444 Q ss_pred HHHHhcCCceEEEecCCcccchhhH-----Hh----hhhccce--------------e------c--CCCCc-ceeeecc Q lcl|Aclame:pro 281 NTFKDSNELTYVLKNYDDQELPEFK-----RL----LRYYGAI--------------K------V--SDNGG-VDTIQVE 328 (492) Q Consensus 281 ~~~~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~~--------------~------~--~~~~d-~~~l~~~ 328 (492) -.-+....|-.=+.-.+..+.++.+ +. .++..+. . + -+||. .+.-|.+ T Consensus 272 VIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLp 351 (524) T protein:vir:10 272 VIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTMP 351 (524) T ss_pred HHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeccCCeeccchhhhhhHhhhcccccCCCCccceeecc Confidence 4444445444322211222222111 11 1110000 0 0 11222 2222333 Q ss_pred cCH-HHHHHHHHHHHHHHHHHhCCCCCCc--cc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 329 VPV-ENSKKYLDELYQKIMLFGQAVDFSS--DK---FGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFD 402 (492) Q Consensus 329 ~~~-~~~~~~i~~l~~~i~~~a~~p~~~~--~~---~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~ 402 (492) ... -+...-+.-+++.++..-++|---. +. |... -|..|-.-+.....-+.+.+..|..-+.++++.=+-+-| T Consensus 352 Ggqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~g-r~~EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKg 430 (524) T protein:vir:10 352 GATGMSDMDDVLYFRTALYRALRIPESRIPSESNSGVMFD-AGTAITRDELKFAKWIRQLQNKFEEIFLDPLKTNLILKK 430 (524) T ss_pred ccCCcChHHHHHHHHHHHHHHhCCCchhccCCCCcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc Confidence 221 2344556777888888777774222 21 2111 222343444445556677777888888887766544444 Q ss_pred cC--Ccc----eeeeEEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHH Q lcl|Aclame:pro 403 IK--GEH----KDVDISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIEQEQT 463 (492) Q Consensus 403 ~~--~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~ 463 (492) +- .+| ..|.+.|...-.-.+...++ ++..+ +| .+|.+++.+.+ ..++ +..++.++|++|.. T Consensus 431 iit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k 510 (524) T protein:vir:10 431 IITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPFIGKYISHQTAMKDFLQMTDEEINQEAKQIEEESK 510 (524) T ss_pred CCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhh Confidence 32 233 45778886555444444433 33333 24 47999998864 3332 24555566666653 Q ss_pred HHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 464 EYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +.. ..++ +++++| T Consensus 511 ~~~---------~~~~-------~~~~~~ 523 (524) T protein:vir:10 511 EAR---------FQNP-------DEEEED 523 (524) T ss_pred cCC---------CCCC-------Chhhhc Confidence 211 0111 111111 No 274 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=23.28 E-value=2.3 Score=18.57 Aligned_cols=419 Identities=12% Similarity=0.104 Sum_probs=169.4 Q ss_pred ChhhhHHHHHHHHHhcCCcee---------ccCCCcHHHHHHHHhhcC--CChhhHHHHHHHHH------HHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVAQALIKGGNIL---------YPSQPTQTEIFDAIVRTN--NKPETLEEMIVRYI------KQHLEKLPEI 63 (492) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~i------~~~~~~~~~~ 63 (492) |.|. +.++-+-|.|..... +.+.|...+.= ...+.. +.+-.-......++ +...+-+.+| T Consensus 1 m~~~--~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dG-a~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~Y 77 (521) T protein:vir:10 1 MNPI--FLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADG-AIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQY 77 (521) T ss_pred CCcc--hhHHhhhhhhhhhhHHhhhhccCccccccccCCCC-ceeeccCCCccccccchhhhhhccccccchHHHHHHHH Confidence 7773 555555555432222 11211111100 000000 00000000011110 1111123344 Q ss_pred HHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHH-HHhhhcCCeeecCCchhHH----HHH----HH Q lcl|Aclame:pro 64 SIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQK-VSYIVGKPIAFKHTDDEVV----KRI----DE 134 (492) Q Consensus 64 ~~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~-~~~l~g~~~~~~~~d~~~~----~~l----~~ 134 (492) +.+..+++-+.. ...||+.. +.--...|+.+..++.+.. +.+ +. T Consensus 78 R~ma~~pEvd~A---------------------------v~eIvneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~ 130 (521) T protein:vir:10 78 RSLSKYHEVDNA---------------------------IDEIINDAIVQEDNRDTVYLDLDKTDWNESVKEMVREEFRT 130 (521) T ss_pred HHHhhccchhhH---------------------------HHhhhcceEEecCCCceEEEEecCcccchHHHHHHHHHHHH Confidence 444333333221 11222221 1112345666654433222 222 22 Q ss_pred HHh-ccHHHHHHHHHHHHHhcCeEEEEEEeCC----CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEE Q lcl|Aclame:pro 135 VLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE----EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYW 209 (492) Q Consensus 135 ~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~----~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~ 209 (492) +.. =+|+....+..|.+.+.|+.|.+.-.|. +|-..+..++|+.+-.+..-.. +....+.+. T Consensus 131 Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~k-------------~~~~~~~v~ 197 (521) T protein:vir:10 131 ILKLLKFEREGKRHFRRWYVDSRIYFHKMIDPARPKDGIKELRLLDPRNVEYYRVNLK-------------SNENGNDVY 197 (521) T ss_pred HHHHhccchhhhHHHhhheeeeeEEEEEEeeCCCccccceeeeeeCCcceeeeeeecC-------------CCCCcchhh Confidence 221 2678888999999999999999986653 4667789999998865543211 111111111 Q ss_pred ecceEEEEEEecce-eeeccccccccccccceeccCCccce--EeecC-------ccCCCCcHHHHHHHHHHHHHH--HH Q lcl|Aclame:pro 210 DKVTVNYYVYENGS-LIPDYSNNLENSKTHFSTGSWGKIPF--IPFKN-------NDLEISDIFMYKTLIDAYNRR--LS 277 (492) Q Consensus 210 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~n-------n~~~~s~~~~v~~liD~~~~~--~s 277 (492) .. ...+|.+.... ......+ .+...=+||. |.|.+ .....|-++. .+..+|++ +- T Consensus 198 ~~-~~e~f~Y~~~~~~~~~~~g---------~~~~~vkI~~daI~y~hSGL~d~~~~~i~syLhk---AiKp~NQLkm~E 264 (521) T protein:vir:10 198 KG-VKEFFTYGATEDNRYNISG---------NSNNLVQIPIDAIVYSHSGKVDIDGKTIVGYLHN---VIKPANQLKMLE 264 (521) T ss_pred cc-ceeeeeeccCCCceecCCC---------CCCcceeechhheeeecccceeCCCCceeccchh---hhHhHHhhHHHH Confidence 11 11223222110 0000000 0011111222 22222 2223344443 33333322 23 Q ss_pred HHHHHHHhcCCceEEEecCCcccchhhH-----Hh----hhhccce--------------e------c--CCCCc-ceee Q lcl|Aclame:pro 278 DLSNTFKDSNELTYVLKNYDDQELPEFK-----RL----LRYYGAI--------------K------V--SDNGG-VDTI 325 (492) Q Consensus 278 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~~--------------~------~--~~~~d-~~~l 325 (492) |.+-.-+....|-.=+.-.+..+.++.+ +. .++..+. . + -+||. .+.- T Consensus 265 DAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEI~ 344 (521) T protein:vir:10 265 DAMVIYRITRAPERRVFYIDVGTMPNKKATQHLNNVMQGLKNRVVYDSSTGKVKNSSNNLAMTEDYWLMRRDGKATTEVS 344 (521) T ss_pred hhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchhhhhhHhhhcccccCCCCcccee Confidence 3344444444443322211111111111 11 1110000 0 0 11222 2222 Q ss_pred ecccCH-HHHHHHHHHHHHHHHHHhCCCCC--Cccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 326 QVEVPV-ENSKKYLDELYQKIMLFGQAVDF--SSDK--FGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH 400 (492) Q Consensus 326 ~~~~~~-~~~~~~i~~l~~~i~~~a~~p~~--~~~~--~~~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~ 400 (492) |.+... -+...-+.-+++.++..-++|-- ..++ |.-.-|+ .|-.-+.....-+.+.+..|..-+.++++.=+-+ T Consensus 345 TLpggqnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~-EItRDEikF~KFI~rLR~rFs~~f~~~L~~qLil 423 (521) T protein:vir:10 345 TLPGAQSMGEMDDVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGN-DITRDELQFTKYIRGLQQQFEPIFLNPLRTNLML 423 (521) T ss_pred eccccCCcChHHHHHHHHHHHHHHhCCCccccCCCCCceeccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh Confidence 333221 23444567777888887777742 2222 1111122 2444444455666777778888888877665444 Q ss_pred hccC--Ccc----eeeeEEeCCCCCcCHHHHH-------HHHHHHh-----c-cCChHHHHHhC-CCC-CCHHHHHHHHH Q lcl|Aclame:pro 401 FDIK--GEH----KDVDISFNYNKVANTELQV-------QTAQQSM-----G-IVSHETVLENH-PFV-EDLQAELERIE 459 (492) Q Consensus 401 ~~~~--~~~----~~i~i~f~~~~p~d~~e~~-------~~~~k~~-----g-~vs~et~l~~l-~~v-~D~~~E~~ri~ 459 (492) -|+- .+| ..|.+.|...-.-.+...+ +++..+. | .+|.+++.+.+ -.. ++..++.++|+ T Consensus 424 Kgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~yvGky~s~dyi~k~ILr~tDeeik~~~k~I~ 503 (521) T protein:vir:10 424 KGKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEVTGKYLSHEYVMKNILRMSDEDIKTEREKID 503 (521) T ss_pred ccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccccccccchHHHHHHHhcCCHhHHHHHHHHHH Confidence 4432 233 4577888655444444333 3344442 3 58999999864 333 23555666666 Q ss_pred HHHHHHHHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 460 QEQTEYNKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 460 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) +|..+.. + .++ ++++.| T Consensus 504 ~E~~~~~-----~----~~p-------~~e~~d 520 (521) T protein:vir:10 504 GELKDSV-----Y----KNP-------EDPMEE 520 (521) T ss_pred HhhhCCC-----C----CCC-------cchhhc Confidence 6653211 0 000 111111 No 275 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=21.68 E-value=2.6 Score=18.34 Aligned_cols=424 Identities=11% Similarity=0.115 Sum_probs=163.0 Q ss_pred ChhhhHHHHHH----HHHhcC-Cc-eeccCCCcHHHHHHHHhhcCCChhhH-----HHHH--HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 1 MQFIQLISQVA----QALIKG-GN-ILYPSQPTQTEIFDAIVRTNNKPETL-----EEMI--VRYIKQHLEKLPEISIGQ 67 (492) Q Consensus 1 ~~~~~~~~~~~----~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l--~~~i~~~~~~~~~~~~~~ 67 (492) ...+.+.++.+ ++..+. .| ..=...|+..+=.-.+......+... ...+ ..-++...+-+.+|+.+. T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR~ma 81 (521) T protein:vir:81 2 FSRLKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYRGLM 81 (521) T ss_pred cchhhhhHhhcCchhhhHHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHHHHh Confidence 11111222211 111110 00 00011111000000000000000000 0000 000111122234444444 Q ss_pred HHhcCCCccccccccccccccccccccccccccchHHHHHHH-HHHhhhcCCeeecCCchhHHH--------HHHHHHh- Q lcl|Aclame:pro 68 EYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQ-KVSYIVGKPIAFKHTDDEVVK--------RIDEVLG- 137 (492) Q Consensus 68 ~YY~G~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~-~~~~l~g~~~~~~~~d~~~~~--------~l~~~~~- 137 (492) .+++-+..+ ..||+. .+.--..+|+.+..++.+..+ ..+.+.. T Consensus 82 ~~pEvd~Av---------------------------~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~l 134 (521) T protein:vir:81 82 NNHEVENAV---------------------------QNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLNT 134 (521) T ss_pred hccchhhHH---------------------------HHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHH Confidence 444333211 112221 111123455555544332222 1222221 Q ss_pred ccHHHHHHHHHHHHHhcCeEEEEEEeCC---CCceEEEEEcccceEEEecCCCCCceEEEEEeeeeccceeEEEEecceE Q lcl|Aclame:pro 138 NRFDDKLHSVLTGASNKGIEWLHPYLDE---EGEFKLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKVEYWDKVTV 214 (492) Q Consensus 138 n~~~~~~~~~~~~~~~~G~~~~~v~~d~---~g~~~i~~~~p~~~~~i~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 214 (492) =+|+....+..|.+.+.|+.|.+.-.|+ +|-..+..++|+.+..+...... +...+++.. ... T Consensus 135 l~F~~~~~~~fR~WYVDgRi~fhkiid~~pk~GI~Elr~lDPr~i~~vr~i~k~-------------~~~~~~v~~-~~~ 200 (521) T protein:vir:81 135 IQFDRRGQDMFRRWYVDSRIFFHKIIGKNPKDGIVELRQLDPRNLEYVREIITE-------------DTPEGKIYK-ATK 200 (521) T ss_pred hccchhhhHHHhhhhhcceEEEEEEEcCCccccceeeeeeCCcceeeeeeeccc-------------ccCccceec-cee Confidence 2778888999999999999999987654 35567899999998876542211 111111111 111 Q ss_pred EEEEEecceeeeccccccccccccceeccCCccce--EeecC-------ccCCCCcHHHHHHHHHHHHHH--HHHHHHHH Q lcl|Aclame:pro 215 NYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPF--IPFKN-------NDLEISDIFMYKTLIDAYNRR--LSDLSNTF 283 (492) Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv--v~~~n-------n~~~~s~~~~v~~liD~~~~~--~s~~~~~~ 283 (492) .+|.+..+........ +.. .++.-=+||- |.|.. +..-.|-++ ..+..+|++ +-|.+-.- T Consensus 201 e~f~Y~~~~~~~~~~g--~~~----~~~~~vkI~~dAI~y~hSGl~d~~~~~i~syLh---kAiKp~NQLkm~EDAlVIY 271 (521) T protein:vir:81 201 EYFIYTVGNSSYCAGG--QVF----SPNSRVKIPRSAITYAHSGLMDCDDKYIIGYLH---RAVKPANQLKLLEDAMVVY 271 (521) T ss_pred eeeeeecCCccccccc--eee----cCCcceeechhheeeeeccceeCCCCeeeecch---hhhHhHHhhHHHHhhHHHH Confidence 1222211111000000 000 0000001111 22211 111123333 333444432 34444444 Q ss_pred HhcCCceEEEecCCcccchhhH-----Hh----hhhccc--------------eec--------CCCCc-ceeeeccc-C Q lcl|Aclame:pro 284 KDSNELTYVLKNYDDQELPEFK-----RL----LRYYGA--------------IKV--------SDNGG-VDTIQVEV-P 330 (492) Q Consensus 284 ~~~~~~~l~~~g~~~~~~~~~~-----~~----~~~~~~--------------~~~--------~~~~d-~~~l~~~~-~ 330 (492) +....|-.=+.-.+..+.++.+ +. .++..+ +.+ -+||. .+.-|.+. + T Consensus 272 RitRAPeRRvFYIDvGnlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGgq 351 (521) T protein:vir:81 272 RITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLKNQQANLSMTEDYWLQRRDGKAITDVTTLPGAS 351 (521) T ss_pred hhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccccccccccchhhhhcccccCCCcccceeecccCC Confidence 5555544332221222222111 11 111000 000 11222 22222332 2 Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCc--cc---cc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC Q lcl|Aclame:pro 331 VENSKKYLDELYQKIMLFGQAVDFSS--DK---FG-SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK 404 (492) Q Consensus 331 ~~~~~~~i~~l~~~i~~~a~~p~~~~--~~---~~-~~~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~ 404 (492) --+...-+.-+++.++..-++|---. +. +. |..| .|-.-+.....-+.+.+..|..-+.++++.=+-+-|+- T Consensus 352 nlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~--EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgii 429 (521) T protein:vir:81 352 GMSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGS--EITRDELEFSKFIRTRQSQFSEVLRDPLKYNLILKNVI 429 (521) T ss_pred CCChHHHHHHHHHHHHHHhCCccccccCCCCcceeccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC Confidence 22344456777788888777774222 22 21 2222 34334444555667777788888877776654444432 Q ss_pred --Ccc----eeeeEEeCCCCCcCHHHHHH-------HHHHH---hc-cCChHHHHHhC-CCCC-CHHHHHHHHHHHHHHH Q lcl|Aclame:pro 405 --GEH----KDVDISFNYNKVANTELQVQ-------TAQQS---MG-IVSHETVLENH-PFVE-DLQAELERIEQEQTEY 465 (492) Q Consensus 405 --~~~----~~i~i~f~~~~p~d~~e~~~-------~~~k~---~g-~vs~et~l~~l-~~v~-D~~~E~~ri~~E~~~~ 465 (492) .+| ..|.+.|...-.-.+...++ ++..+ +| .+|.+++.+.+ -.++ +..++.++|++|..+. T Consensus 430 t~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~dyi~k~ILr~tDeei~~~~k~I~~E~~~~ 509 (521) T protein:vir:81 430 TEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQTVMRDILKYTDDQMDTEKKQIEEEANDP 509 (521) T ss_pred CHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHHHHHHHHHHHHHHhhCC Confidence 222 35778886555444444333 33333 24 47999999864 3332 2455666666665432 Q ss_pred HHhhccccCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 466 NKQLPNLDDGGADSAQQQERSNNKESE 492 (492) Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~e 492 (492) .-.-+ ++++.+ T Consensus 510 ~~~~p----------------~~~~~~ 520 (521) T protein:vir:81 510 RFKQT----------------PDEIED 520 (521) T ss_pred CCCCC----------------cccccC Confidence 11100 001111 Done!